BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase
[Candidatus Liberibacter asiaticus str. psy62]
         (284 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040075|gb|ACT56871.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 284

 Score =  584 bits (1506), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN
Sbjct: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR
Sbjct: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW
Sbjct: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS
Sbjct: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284
           LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI
Sbjct: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284


>gi|315122190|ref|YP_004062679.1| dimethyladenosine transferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495592|gb|ADR52191.1| dimethyladenosine transferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 283

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/283 (76%), Positives = 249/283 (87%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   NK +SLK ILS Y I+P K MGQNFL D+N+LKKIA +SGSL+G+T IEIG GPGN
Sbjct: 1   MISKNKKNSLKNILSRYDIVPHKNMGQNFLFDINLLKKIATTSGSLNGVTAIEIGPGPGN 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LTQ+LL LGA+KVIV+EKD QF PIL +IS Q+PNRLEIIQ DALK+DF++  +I +PIR
Sbjct: 61  LTQILLELGAQKVIVVEKDPQFLPILNNISLQYPNRLEIIQGDALKIDFKELSHIPAPIR 120

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           II+NLPYNIGTRLLFNWI++ TWPPFWESLTLLFQKEVG+RITAQKN PHYGRLS+LT W
Sbjct: 121 IISNLPYNIGTRLLFNWITSSTWPPFWESLTLLFQKEVGKRITAQKNDPHYGRLSILTSW 180

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKA +MFDI PHVFFP PK+TSTV+HF PHLNPIPCCLESLKKITQEAFGKRRKTLRQS
Sbjct: 181 RTKAKIMFDIPPHVFFPKPKITSTVVHFTPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           LK L GENLL QAGIE++LRAENLSIEDFCRITNI ++N +++
Sbjct: 241 LKPLEGENLLRQAGIESSLRAENLSIEDFCRITNIFSENNNVS 283


>gi|222085448|ref|YP_002543978.1| dimethyladenosine transferase [Agrobacterium radiobacter K84]
 gi|221722896|gb|ACM26052.1| dimethyladenosine transferase [Agrobacterium radiobacter K84]
          Length = 276

 Score =  338 bits (866), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 152/267 (56%), Positives = 199/267 (74%), Gaps = 1/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ +K+A ++GSL+G+TV E+G GPG LT+ +L LG
Sbjct: 11  LRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGSLEGVTVFEVGPGPGGLTRAILALG 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A KVI IE+D +  P L +I+  +P RLE+I+ DALK DF    +   P++IIANLPYN+
Sbjct: 71  AAKVIAIERDARCLPALAEIADHYPGRLEVIEGDALKTDFAGMAS-EGPVKIIANLPYNV 129

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+SLTL+FQKEVG+RI A ++  HYGRL VL GWRT+A M FD
Sbjct: 130 GTQLLVNWLLPGHWPPFWQSLTLMFQKEVGQRIVADEDDDHYGRLGVLCGWRTQAHMAFD 189

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           ISP  F P PKVTSTV+H  P  NPIPC ++ L+K+TQ AFG+RRK LRQSLK LGGE L
Sbjct: 190 ISPQAFSPPPKVTSTVVHLTPRENPIPCSVDKLEKVTQAAFGQRRKMLRQSLKPLGGETL 249

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +A I+   RAE LS+E+FCR+ N L
Sbjct: 250 LQKADIDPQRRAETLSVEEFCRLANCL 276


>gi|218673561|ref|ZP_03523230.1| dimethyladenosine transferase [Rhizobium etli GR56]
          Length = 275

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 154/267 (57%), Positives = 200/267 (74%), Gaps = 1/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G+L+  TVIE+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEETTVIEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           ARKVI IE+D +  P L +I+  +P RLE+I+ DALK DFE       P++IIANLPYN+
Sbjct: 70  ARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAP-EGPVKIIANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GWRT+A M FD
Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLCGWRTEARMAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +SP  F P PKVTSTV+H  P  NPIPC + +L+K+TQ AFG+RRK LRQSLK LGGE+L
Sbjct: 189 VSPQAFTPPPKVTSTVVHLTPRENPIPCSVANLEKVTQAAFGQRRKMLRQSLKPLGGESL 248

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE LS+E+FC + N L
Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANSL 275


>gi|241203944|ref|YP_002975040.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857834|gb|ACS55501.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 275

 Score =  336 bits (862), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 152/267 (56%), Positives = 200/267 (74%), Gaps = 1/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G+LD  T++E+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGTLDEATIVEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           ARKVI IE+D +  P L +I+  +P RLE+I+ DALK+DFE       P++IIANLPYN+
Sbjct: 70  ARKVIAIERDPRCLPALAEIADHYPGRLEVIEGDALKIDFETLVP-EGPVKIIANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GWRT+A M FD
Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGWRTEARMAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+H IP   PIPC + +L+K+TQ AFG+RRK LRQSLK LGGE+L
Sbjct: 189 VPPQAFTPPPKVTSTVVHLIPRDTPIPCAVANLEKVTQAAFGQRRKMLRQSLKPLGGESL 248

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE LS+E+FC + N L
Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANSL 275


>gi|227821471|ref|YP_002825441.1| dimethyladenosine transferase [Sinorhizobium fredii NGR234]
 gi|254807879|sp|C3M9C2|RSMA_RHISN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|227340470|gb|ACP24688.1| dimethyladenosine transferase [Sinorhizobium fredii NGR234]
          Length = 296

 Score =  335 bits (859), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 149/267 (55%), Positives = 200/267 (74%), Gaps = 2/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           ARKV+ IE+D +  P L +IS+ +P RL++++ DALKVDFE+      P+RIIANLPYN+
Sbjct: 70  ARKVVAIERDPRCLPALAEISAHYPGRLDVVEGDALKVDFERL--AEGPVRIIANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+  + WPPFW+S+TL+ Q+EVG RI A  +  HYGRL VL GWRTKA + FD
Sbjct: 128 GTQLLVNWLLPERWPPFWQSMTLMIQREVGLRIVAGADDDHYGRLGVLCGWRTKARLAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+H  P  NPIPC + +L+K+TQ AFG+RRK LRQSLK +GGE L
Sbjct: 188 VPPQAFTPPPKVTSTVVHLEPIDNPIPCAVSALEKVTQAAFGQRRKMLRQSLKSIGGEAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE L++E+FCR+ N L
Sbjct: 248 LGKAGIDPQRRAETLTVEEFCRLANCL 274


>gi|327188008|gb|EGE55238.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Rhizobium etli CNPAF512]
          Length = 275

 Score =  335 bits (858), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 150/267 (56%), Positives = 199/267 (74%), Gaps = 1/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KV+ +E+D +  P L +I+  +P RLE+I+ DALK DFE       P++IIANLPYN+
Sbjct: 70  AKKVVAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFESQAP-EGPVKIIANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GWRTKA M FD
Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGWRTKARMAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+H  P  NPIPC + +L+K+TQ AFG+RRK LRQSLK LGGE+L
Sbjct: 189 VPPQAFTPPPKVTSTVVHLTPRENPIPCSVANLEKVTQAAFGQRRKMLRQSLKPLGGESL 248

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE LS+E+FC + N L
Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANSL 275


>gi|150395984|ref|YP_001326451.1| dimethyladenosine transferase [Sinorhizobium medicae WSM419]
 gi|166221706|sp|A6U7I6|RSMA_SINMW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|150027499|gb|ABR59616.1| dimethyladenosine transferase [Sinorhizobium medicae WSM419]
          Length = 274

 Score =  333 bits (853), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 150/267 (56%), Positives = 198/267 (74%), Gaps = 2/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFLLDLN+ +KIA ++G L+G+TVIE+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEGVTVIEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KV+ IE+D +  P L +I + +P RL++++ DALKVDFE   +   P+RIIANLPYN+
Sbjct: 70  AKKVVAIERDSRCLPALAEIGAHYPERLDVVEGDALKVDFEALAD--GPVRIIANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+S+TL+FQ+EVG RI A  +  HYGRL VL GWRTKA++ FD
Sbjct: 128 GTQLLVNWLLPGRWPPFWQSMTLMFQREVGLRIVASPDDDHYGRLGVLCGWRTKASLAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+H  P   PIPC    L+K+TQ AFG+RRK LRQSLK LGGE L
Sbjct: 188 VPPQAFTPPPKVTSTVVHLEPIEVPIPCSPAVLEKVTQAAFGQRRKMLRQSLKPLGGEAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE LS+E+FCR+ N L
Sbjct: 248 LAKAGIDPKRRAETLSVEEFCRLANCL 274


>gi|190891131|ref|YP_001977673.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Rhizobium etli CIAT 652]
 gi|218515820|ref|ZP_03512660.1| dimethyladenosine transferase [Rhizobium etli 8C-3]
 gi|226732613|sp|B3PUU6|RSMA_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|190696410|gb|ACE90495.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Rhizobium etli CIAT 652]
          Length = 275

 Score =  333 bits (853), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 149/267 (55%), Positives = 199/267 (74%), Gaps = 1/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI +E+D +  P L +I+  +P RLE+I+ DALK DFE      + ++IIANLPYN+
Sbjct: 70  AKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKADFESLAPEGA-VKIIANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GWRT+A M FD
Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATEDDDHYGRLGVLCGWRTEARMAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+H  P  NPIPC + +L+K+TQ AFG+RRK LRQSLK LGGE+L
Sbjct: 189 VPPQAFTPPPKVTSTVVHLTPRKNPIPCSVANLEKVTQAAFGQRRKMLRQSLKPLGGESL 248

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE LS+E+FC + N L
Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANSL 275


>gi|15964902|ref|NP_385255.1| dimethyladenosine transferase [Sinorhizobium meliloti 1021]
 gi|307300972|ref|ZP_07580741.1| dimethyladenosine transferase [Sinorhizobium meliloti BL225C]
 gi|27151590|sp|Q92QZ1|RSMA_RHIME RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|15074081|emb|CAC45728.1| Putative dimethyladenosine transferase [Sinorhizobium meliloti
           1021]
 gi|306903927|gb|EFN34513.1| dimethyladenosine transferase [Sinorhizobium meliloti BL225C]
          Length = 274

 Score =  332 bits (850), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 151/267 (56%), Positives = 197/267 (73%), Gaps = 2/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KV+ IE+D +  P L +I + +P RL+II+DDALKVDFE   +   P+RIIANLPYN+
Sbjct: 70  AKKVVAIERDSRCLPALAEIGAHYPGRLDIIEDDALKVDFEALAD--GPVRIIANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+S+TL+FQ+EVG RI A  +  HYGRL VL GWRTKA + FD
Sbjct: 128 GTQLLVNWLLPGLWPPFWQSMTLMFQREVGLRIVAGADDDHYGRLGVLCGWRTKARLAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+H  P   PIPC    L+K+TQ AFG+RRK LRQSLK LGGE L
Sbjct: 188 VPPQAFTPPPKVTSTVVHLEPVEAPIPCSPAVLEKVTQAAFGQRRKMLRQSLKPLGGEAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE L++E+FCR+ N L
Sbjct: 248 LAKAGIDPQRRAETLTVEEFCRLANCL 274


>gi|325292482|ref|YP_004278346.1| dimethyladenosine transferase [Agrobacterium sp. H13-3]
 gi|325060335|gb|ADY64026.1| dimethyladenosine transferase [Agrobacterium sp. H13-3]
          Length = 276

 Score =  331 bits (849), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 147/267 (55%), Positives = 195/267 (73%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFL DLN+ +KIA ++G LDG+TVIE+G GPG LT+ +L+LG
Sbjct: 10  LRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGGLTRAILSLG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI IE+D +  P L +I + +P RLE+I+ DALK DFE       P+RIIANLPYN+
Sbjct: 70  AKKVIAIERDSRCLPALAEIEAHYPGRLEVIEGDALKTDFEALVPAGEPVRIIANLPYNV 129

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW S+TL+FQKEVG+RI A++   HYGRL VL GWRT + M FD
Sbjct: 130 GTQLLVNWLLPKEWPPFWLSMTLMFQKEVGQRIVAEEGDNHYGRLGVLAGWRTVSEMAFD 189

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+H +P   P+PC +  L+K+T+ AFG+RRK LRQS+K LGGE L
Sbjct: 190 VPPQAFSPPPKVTSTVVHLLPKEKPLPCDVAKLEKVTEAAFGQRRKMLRQSVKSLGGEVL 249

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE LS+E+F  + N L
Sbjct: 250 LEKAGIDATRRAETLSVEEFVTLANCL 276


>gi|15888443|ref|NP_354124.1| dimethyladenosine transferase [Agrobacterium tumefaciens str. C58]
 gi|27151578|sp|Q8UGD5|RSMA_AGRT5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|15156135|gb|AAK86909.1| rRNA-adenine N6,N6-dimethyltransferase [Agrobacterium tumefaciens
           str. C58]
          Length = 276

 Score =  331 bits (849), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 145/267 (54%), Positives = 196/267 (73%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFL DLN+ +KIA ++G LDG+TVIE+G GPG LT+ +L+LG
Sbjct: 10  LRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGGLTRAILSLG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI +E+D +  P+L +I + +P RLE+I+ DALK DFE       P+RIIANLPYN+
Sbjct: 70  AKKVIAVERDSRCLPVLAEIEAHYPGRLEVIEGDALKTDFEALVPAGEPVRIIANLPYNV 129

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW S+TL+FQKEVG+RI A++   HYGRL VL GWRT + M FD
Sbjct: 130 GTQLLVNWLLPREWPPFWLSMTLMFQKEVGQRIVAEEGDNHYGRLGVLAGWRTVSEMAFD 189

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+H +P   P+PC +  L+++T+ AFG+RRK LRQS+K LGGE L
Sbjct: 190 VPPQAFSPPPKVTSTVVHLLPKDKPLPCDVAKLERVTEAAFGQRRKMLRQSVKSLGGETL 249

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE LS+E+F  + N L
Sbjct: 250 LEKAGIDPTRRAETLSVEEFVTLANCL 276


>gi|222148148|ref|YP_002549105.1| dimethyladenosine transferase [Agrobacterium vitis S4]
 gi|254807854|sp|B9JUV4|RSMA_AGRVS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|221735136|gb|ACM36099.1| rRNA-adenine N6N6-dimethyltransferase [Agrobacterium vitis S4]
          Length = 275

 Score =  331 bits (848), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 152/267 (56%), Positives = 196/267 (73%), Gaps = 1/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFLLDLNI +K+A ++G L   TV E+G GPG LT+ LL LG
Sbjct: 10  LRDVIQRHGLDAKKALGQNFLLDLNITQKVARTAGDLTNATVFEVGPGPGGLTRALLALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI IE+D +  P L +IS  +P RLE+I+ DALK DFE       P++I+ANLPYN+
Sbjct: 70  AKKVIAIERDSRCLPALAEISDHYPGRLEVIEGDALKTDFEAMAP-DGPVKIVANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+SLTL+FQKEVG+RI A+ +  HYGRL VL GWRT+A M FD
Sbjct: 129 GTQLLINWLMPRQWPPFWDSLTLMFQKEVGQRIVAEADDDHYGRLGVLCGWRTEAHMAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +SP  F P PKVTSTV+H  P   PIPC +  L+K+TQ AFG+RRK LR SLK LGGE L
Sbjct: 189 LSPQAFTPPPKVTSTVVHLTPRPAPIPCEIAKLEKLTQAAFGQRRKMLRASLKPLGGEAL 248

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L++A I+ + RAE LS+E+FCRI N+L
Sbjct: 249 LNRAEIDPSRRAETLSVEEFCRIANLL 275


>gi|209548666|ref|YP_002280583.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226732614|sp|B5ZWD8|RSMA_RHILW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|209534422|gb|ACI54357.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 275

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 150/267 (56%), Positives = 195/267 (73%), Gaps = 1/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G+L+  T+ E+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEEATIFEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           ARKVI +E+D +  P L +I+  +P RLE+I+ DALK DFE       PI+IIANLPYN+
Sbjct: 70  ARKVIAVERDTRCLPALAEIADHYPGRLEVIEGDALKTDFEALAP-DGPIKIIANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GWRT+  M FD
Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVASEDDDHYGRLGVLCGWRTQTRMAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+H  P  NPIPC +  L+K+TQ AFG+RRK LRQSLK LGGE L
Sbjct: 189 VPPQAFTPPPKVTSTVVHLTPRENPIPCAVGDLEKVTQAAFGQRRKMLRQSLKPLGGERL 248

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE LS+E+FC + N L
Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANSL 275


>gi|116251330|ref|YP_767168.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|118600891|sp|Q1MJ01|RSMA_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115255978|emb|CAK07059.1| putative dimethyladenosine transferase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 275

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 151/267 (56%), Positives = 196/267 (73%), Gaps = 1/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G+L+  TV E+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEDATVFEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           ARKVI IE+D +  P L +I+  +P RLE+I+ DALK DFE       PI+IIANLPYN+
Sbjct: 70  ARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFETLAP-QGPIKIIANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GWRT+A M FD
Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGWRTEARMAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+   P  NPIPC + +L+K+TQ AFG+RRK LRQSLK LGGE L
Sbjct: 189 VPPQAFTPPPKVTSTVVQLTPRENPIPCAVSNLEKVTQAAFGQRRKMLRQSLKPLGGERL 248

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE LS+++FC + N L
Sbjct: 249 LVKAGIDPARRAETLSVKEFCLLANSL 275


>gi|307317707|ref|ZP_07597145.1| dimethyladenosine transferase [Sinorhizobium meliloti AK83]
 gi|306896469|gb|EFN27217.1| dimethyladenosine transferase [Sinorhizobium meliloti AK83]
          Length = 274

 Score =  329 bits (843), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 150/267 (56%), Positives = 195/267 (73%), Gaps = 2/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KV+ IE+D +  P L +I + +P RL+II+ DALKVDFE       P+RIIANLPYN+
Sbjct: 70  AKKVVAIERDSRCLPALAEIGAHYPGRLDIIEGDALKVDFEAL--AGGPVRIIANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+S+TL+FQ+EVG RI A  +  HYGRL VL GWRTKA + FD
Sbjct: 128 GTQLLVNWLLPGHWPPFWQSMTLMFQREVGLRIVAGADDDHYGRLGVLCGWRTKARLAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+H  P   PIPC    L+K+TQ AFG+RRK LRQSLK LGGE L
Sbjct: 188 VPPQAFTPPPKVTSTVVHLEPVEAPIPCSPAVLEKVTQAAFGQRRKMLRQSLKPLGGEAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE L++E+FCR+ N L
Sbjct: 248 LAKAGIDPQRRAETLTVEEFCRLANCL 274


>gi|86357087|ref|YP_468979.1| dimethyladenosine transferase [Rhizobium etli CFN 42]
 gi|119365052|sp|Q2KA84|RSMA_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|86281189|gb|ABC90252.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Rhizobium etli CFN 42]
          Length = 275

 Score =  328 bits (840), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 147/267 (55%), Positives = 197/267 (73%), Gaps = 1/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ +K+A ++G+L+  TV E+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGALEETTVFEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI +E+D +  P L +I+  +P RLE+I+ DALK DFE       P++IIANLPYN+
Sbjct: 70  AKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFEALAP-EGPVKIIANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GWRT A M FD
Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLCGWRTDARMAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTSTV+H +P  NP+ C + +L+K+TQ AFG+RRK LRQSLK LGGE+L
Sbjct: 189 VPPQAFTPPPKVTSTVVHLLPRENPVQCAVANLEKVTQAAFGQRRKMLRQSLKPLGGESL 248

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE LS+E+FC + N L
Sbjct: 249 LVKAGIDPARRAETLSVEEFCLLANNL 275


>gi|307946738|ref|ZP_07662073.1| dimethyladenosine transferase [Roseibium sp. TrichSKD4]
 gi|307770402|gb|EFO29628.1| dimethyladenosine transferase [Roseibium sp. TrichSKD4]
          Length = 280

 Score =  308 bits (790), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 147/267 (55%), Positives = 189/267 (70%), Gaps = 3/267 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  KK +GQNFLLDLN+  +IA S+G L+G+TV+E+G GPG LT+ +L  G
Sbjct: 10  LREVIATHGLDAKKSLGQNFLLDLNLTSRIARSAGDLNGVTVLEVGPGPGGLTRAILAAG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +VI IEKD +  P L +IS+ +  +LE+I +DALK+D      IS PI+IIANLPYN+
Sbjct: 70  ADRVIAIEKDTRCLPALAEISNHYDGKLEVISEDALKID-PTSLGISGPIKIIANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NWI+ + WPPFW SLTLLFQKEVGERI A+  S  YGRL VL  WR ++ M+FD
Sbjct: 129 GTQLLINWITTENWPPFWTSLTLLFQKEVGERIVAKPGSKAYGRLGVLASWRCQSGMLFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--E 247
           I P  F P PKVTS V+H +P  +P+PC L  L+KIT  AFG+RRK LR SLK LG   E
Sbjct: 189 IGPQAFTPPPKVTSAVVHLVPTHSPLPCDLNILEKITAAAFGQRRKMLRASLKSLGKPPE 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274
            LL  AGIE   RAE + +E F RI N
Sbjct: 249 PLLETAGIEPTTRAEQVDVEGFVRIAN 275


>gi|110634113|ref|YP_674321.1| dimethyladenosine transferase [Mesorhizobium sp. BNC1]
 gi|118600875|sp|Q11HG9|RSMA_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|110285097|gb|ABG63156.1| dimethyladenosine transferase [Chelativorans sp. BNC1]
          Length = 275

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 131/265 (49%), Positives = 187/265 (70%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ ++IA ++G LD  TV+E+G GPG LT+ LL  G
Sbjct: 9   LRDVIERHGLFARKALGQNFLLDLNLTRRIARTAGGLDNATVLEVGPGPGGLTRALLMEG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IE+D++    L++I++ +P RLEI+  DA+K DF      S  ++I+ANLPYNI
Sbjct: 69  ARRVVAIERDERCIAALEEIAAHYPGRLEIVAGDAMKADFAALAGNSGDVKIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++  TWPPF+ES+TL+FQ+EV ERI A+  S HYGRL VL GWRT+A + FD
Sbjct: 129 GTELLIRWLTPQTWPPFYESMTLMFQREVAERIVAKPGSSHYGRLGVLAGWRTEARIAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKV S+V+  +P  +P+   +  L + T+ AFG+RRK LRQSL+ +GGE L
Sbjct: 189 VPPQAFTPPPKVISSVVKIVPRADPLTVEVGRLARTTEAAFGQRRKMLRQSLRSVGGEAL 248

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
           L +AGI+   RAE LS+E+F R+  
Sbjct: 249 LEKAGIDGTRRAETLSVEEFVRLAR 273


>gi|319784428|ref|YP_004143904.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170316|gb|ADV13854.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 279

 Score =  303 bits (775), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 137/271 (50%), Positives = 188/271 (69%), Gaps = 4/271 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFLLDLN+  KIA ++G L   TVIE+G GPG LT+ LL  G
Sbjct: 9   LREVIERHGLQAKKALGQNFLLDLNLTGKIARTAGDLSDATVIEVGPGPGGLTRALLANG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----PIRIIANL 125
           AR+VI IE+D++    L ++S  +P RLE++  DALK DF      ++    P++I+ANL
Sbjct: 69  ARQVIAIERDERCLAALAEVSGHYPGRLEVVSGDALKTDFTGLAGRATGNGGPVKIVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYNIGT LL  W++   WPPF+ S+TL+FQ+EV ERI A   S  YGRL VL GWRT+A 
Sbjct: 129 PYNIGTELLVRWLTVSDWPPFYTSMTLMFQREVAERIVAPAGSDSYGRLGVLAGWRTEAR 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           + FD+ P  F P PKVTS+V+H +P   P+P  ++ L ++T+ AFG+RRK LRQS+K LG
Sbjct: 189 IAFDVPPQAFTPPPKVTSSVVHLVPRPMPLPTEVKKLGRVTEAAFGQRRKMLRQSVKSLG 248

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           GE LL +AGI+   RAE LS+E+F R+TN +
Sbjct: 249 GEALLDRAGIDPTRRAETLSVEEFVRLTNAV 279


>gi|260466951|ref|ZP_05813133.1| dimethyladenosine transferase [Mesorhizobium opportunistum WSM2075]
 gi|259029248|gb|EEW30542.1| dimethyladenosine transferase [Mesorhizobium opportunistum WSM2075]
          Length = 274

 Score =  303 bits (775), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 137/267 (51%), Positives = 187/267 (70%), Gaps = 1/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  +++  KK +GQNFLLDLN+  KIA ++G L   T+IE+G GPG LT+ LL  G
Sbjct: 9   LRDVIERHELQAKKALGQNFLLDLNLTSKIARAAGDLTNTTIIEVGPGPGGLTRALLFNG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+VI IE+D++    L ++S  +P RLEII  DALK DF       +P +I+ANLPYNI
Sbjct: 69  ARRVIAIERDERCLAALAEVSEHYPGRLEIIAGDALKTDFAAL-AAGAPTKIVANLPYNI 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPF+ S+TL+FQ+EV +RI A   S  YGRL VL GWRT+A + FD
Sbjct: 128 GTELLIRWLTVTDWPPFYASMTLMFQREVAQRIVAAPGSDAYGRLGVLAGWRTQARIAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTS+V+H  P   P+P  ++ L ++T+ AFG+RRK LRQS+K LGGE L
Sbjct: 188 VPPQAFTPPPKVTSSVVHLEPRATPLPADVKKLGRVTEAAFGQRRKMLRQSVKSLGGETL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L +AGI+   RAE LS+E+F R+TN++
Sbjct: 248 LERAGIDPTRRAETLSVEEFVRLTNLV 274


>gi|154246772|ref|YP_001417730.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2]
 gi|226732642|sp|A7IJ80|RSMA_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|154160857|gb|ABS68073.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2]
          Length = 288

 Score =  303 bits (775), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 137/267 (51%), Positives = 184/267 (68%), Gaps = 3/267 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+  +IA +SG L+G TV+E+G GPG LT+ LL LG
Sbjct: 10  LRDVIRRHGLSAQKSLGQNFLLDLNLTGRIARASGPLEGATVVEVGPGPGGLTRALLALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+VI IE+DQ+    L ++S  +P RLE+I  DALKVD          +R++ANLPYNI
Sbjct: 70  ARRVIAIERDQRCLDALAEVSDHYPGRLEVISGDALKVDVRPLVG-DGEVRVVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+S D WPP++ SLTL+FQKEV ERI A   S  YGRL+VL GWRT A + FD
Sbjct: 129 ATLLLIGWLSTDPWPPWFSSLTLMFQKEVAERIVAAPGSKAYGRLAVLAGWRTTARIAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN- 248
           ++P  F P PKVTS+V+H +P   P+PC L +L+K+T+ AFG+RRK LRQSLK LG +  
Sbjct: 189 VAPSAFVPPPKVTSSVVHLVPRSEPLPCALSALEKVTEAAFGQRRKMLRQSLKSLGVDTA 248

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITN 274
            LL   G+E   RAE + ++ F R+ N
Sbjct: 249 ALLKATGVEETARAEEIDVDGFVRLAN 275


>gi|163759131|ref|ZP_02166217.1| dimethyladenosine transferase [Hoeflea phototrophica DFL-43]
 gi|162283535|gb|EDQ33820.1| dimethyladenosine transferase [Hoeflea phototrophica DFL-43]
          Length = 276

 Score =  301 bits (771), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 135/267 (50%), Positives = 189/267 (70%), Gaps = 1/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ I++ Y + P+K +GQNFL DLN+  KIA ++G L+G T+ EIG GPG LT+ LL  G
Sbjct: 11  LRDIVATYGLAPRKALGQNFLFDLNLTGKIARAAGPLEGFTIFEIGPGPGGLTRALLEQG 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +V+ IE+DQ+  P+L++IS+ +P +LE+++ DAL VD       +   +I+ANLPYN+
Sbjct: 71  AERVVAIERDQRCLPVLEEISAHYPGKLEVVEADALDVDLAALAGGAP-AKIVANLPYNV 129

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW++ +   PFW S+TL+FQKEVG+RI A   S H+GRL VL GW T A ++FD
Sbjct: 130 GTQLLINWLTVNPKAPFWTSMTLMFQKEVGQRIIAAPGSNHFGRLGVLAGWLTHADILFD 189

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKVTS+V+  +P  +P+PC L  L+++TQ AFG+RRK LRQSLK LGGE L
Sbjct: 190 VPPQAFTPPPKVTSSVVQLVPRADPLPCELAKLERVTQAAFGQRRKMLRQSLKPLGGEAL 249

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L   GI+   RAE LS+E+FC +   +
Sbjct: 250 LESVGIDPARRAETLSVEEFCALARAI 276


>gi|114704784|ref|ZP_01437692.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Fulvimarina pelagi HTCC2506]
 gi|114539569|gb|EAU42689.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Fulvimarina pelagi HTCC2506]
          Length = 277

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 140/274 (51%), Positives = 191/274 (69%), Gaps = 1/274 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  ++   L+T+++ + ++P+K +GQNFLLDLN+  KIA  +  L+   V+E+G GPG 
Sbjct: 1   MSTIDELPPLRTVIAEHDLVPRKQLGQNFLLDLNLTSKIARQAAPLEDCIVVEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA +V+  EKD +  P+L+DI+ ++P RLE+ Q DAL +D E      + ++
Sbjct: 61  LTRALLANGASRVVAAEKDPRCVPVLEDIAKRYPGRLEVRQMDALDLDVESIAEDRT-LK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+S + WPP W+SLTL+FQKEV ERI A  +S HYGRL+VL G 
Sbjct: 120 IVANLPYNVGTQLLVNWLSVEAWPPRWQSLTLMFQKEVAERIVALPSSSHYGRLAVLAGC 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKA ++FDI    F P PKVTS V+   P   P+P  L +L+K+T  AFG+RRK LRQS
Sbjct: 180 RTKARILFDIPRQAFTPPPKVTSAVVQLTPRDAPLPVSLAALEKVTLTAFGQRRKMLRQS 239

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           LK LGGE LL+  GI+   RAE LSIE+F  I N
Sbjct: 240 LKPLGGEALLNAVGIDPQRRAETLSIEEFVAIAN 273


>gi|158425944|ref|YP_001527236.1| dimethyladenosine transferase [Azorhizobium caulinodans ORS 571]
 gi|172047844|sp|A8HVI9|RSMA_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|158332833|dbj|BAF90318.1| rRNA 16S rRNA dimethylase [Azorhizobium caulinodans ORS 571]
          Length = 291

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/276 (49%), Positives = 191/276 (69%), Gaps = 3/276 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+  +IA  SG L+G TV+E+G GPG 
Sbjct: 1   MSAIDDLPPLREVIRAHGLSAQKSLGQNFLLDLNLTARIARGSGPLEGATVVEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL LGARKVI IE+D +    L +I++ +P RLEII+ DALKVD     +  +  R
Sbjct: 61  LTRALLALGARKVIAIERDHRCIAALNEIAAAYPGRLEIIEGDALKVDVRPHLD-GAEAR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+GT+LL  W+S D WPP++ SLTL+FQ+EV ERI A  +S  YGRL+VLTGW
Sbjct: 120 VVANLPYNVGTQLLVGWLSTDPWPPWFSSLTLMFQREVAERIVAGPDSKAYGRLAVLTGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +A ++FD++P  F P PKVTS+VIH +P   P+PC L  L+++T+ AFG+RRK LRQS
Sbjct: 180 RAQARILFDVAPSAFVPPPKVTSSVIHVVPRAEPVPCALRDLERVTEAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITN 274
           LK LG +   LL + GI+   RAE + +  F  + N
Sbjct: 240 LKSLGVDPLALLSETGIDETARAEEIDVAGFLALAN 275


>gi|118588149|ref|ZP_01545559.1| dimethyladenosine transferase [Stappia aggregata IAM 12614]
 gi|118439771|gb|EAV46402.1| dimethyladenosine transferase [Stappia aggregata IAM 12614]
          Length = 274

 Score =  299 bits (766), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 140/275 (50%), Positives = 189/275 (68%), Gaps = 3/275 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +++ + +  KK +GQNFLLDLN+  +IA S+GSL+  TV+E+G GPG LT+ LL  G
Sbjct: 1   MRDVIAEHGLNAKKSLGQNFLLDLNLTSRIARSAGSLEDCTVLEVGPGPGGLTRALLAAG 60

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++VI IEKD +  P L +IS+ +P RLE+I+ DAL++D          +RI ANLPYN+
Sbjct: 61  AKRVIAIEKDSRCLPALAEISAHYPGRLEVIEGDALEIDPVALTG-GDKVRIAANLPYNV 119

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NWI+   WPPFW SLTL+FQKEVGERI+A   S  YGRL+VL GWR K  ++FD
Sbjct: 120 GTQLLINWITTPDWPPFWSSLTLMFQKEVGERISASPGSKAYGRLAVLAGWRCKGGILFD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GE 247
           ISP  F P PKVTS V+H  P+ +P+PC L++L+KIT  AFG+RRK LR SLK L    E
Sbjct: 180 ISPKAFTPPPKVTSAVVHLEPNASPLPCDLKALEKITAAAFGQRRKMLRASLKSLSADAE 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            L+ +AG++   RAE + I  F  + N     Q +
Sbjct: 240 ELVTKAGLKPTARAEEIDIAGFVDLANTFRAAQAV 274


>gi|13476521|ref|NP_108091.1| dimethyladenosine transferase [Mesorhizobium loti MAFF303099]
 gi|27151594|sp|Q984S7|RSMA_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|14027282|dbj|BAB54236.1| dimethyladenosine transferase [Mesorhizobium loti MAFF303099]
          Length = 279

 Score =  298 bits (764), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 136/269 (50%), Positives = 187/269 (69%), Gaps = 4/269 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFLLDLN+  KIA S+G L    VIE+G GPG LT+ LL+ G
Sbjct: 9   LRDVIERHGLQAKKALGQNFLLDLNLTGKIARSAGDLTNTAVIEVGPGPGGLTRALLSNG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANL 125
           AR+V+ IE+D++    L ++S+ +P RLE++  DALK DF    + +      +RI+ANL
Sbjct: 69  ARRVVAIERDERCLAALAEVSAHYPGRLEVVSGDALKTDFAALASAAGGASGQVRIVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYNIGT LL  W++   WPPF+ S+TL+FQ+EV +RI A+  S  YGRL VL GWRTKA 
Sbjct: 129 PYNIGTELLVRWLTVVDWPPFYASMTLMFQREVAQRIVAEPGSDAYGRLGVLAGWRTKAR 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           + FD+ P  F P PKVTS+V+H  P   P+P  ++ L ++T+ AFG+RRK LRQS+K LG
Sbjct: 189 IAFDVPPQAFTPPPKVTSSVVHLEPRATPLPADVKKLGRVTEAAFGQRRKMLRQSVKSLG 248

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITN 274
           GE LL +AGI+   RAE LS+E+F R+TN
Sbjct: 249 GEALLERAGIDPTRRAETLSVEEFVRLTN 277


>gi|319404051|emb|CBI77639.1| dimethyladenosine transferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 276

 Score =  297 bits (761), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 142/269 (52%), Positives = 190/269 (70%), Gaps = 2/269 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++S YK+   K +GQNF+ DLN+  KIA  +G+++G  V+EIG GPG LT+ LL  G
Sbjct: 9   LRNVISKYKLQANKSLGQNFIFDLNLTAKIAHQAGNIEGKPVLEIGPGPGGLTRALLAKG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128
           A  V  IE+D++  P L +I   +P +L++I +DALK DF K F       RIIANLPYN
Sbjct: 69  A-IVTAIERDERCMPALLEIEEHYPQKLKLIFNDALKQDFPKLFEAYPEKPRIIANLPYN 127

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           IGT+LL NW+   +WPPF+ES+TL+FQ+EV +RITA   SP+YGRLS+LTGWR+ A + F
Sbjct: 128 IGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATAQSPYYGRLSILTGWRSIAKIAF 187

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           DI P  F P PKVTS+V+H IP L P+ C  + L  +T+ AFG+RRK LRQSLK +GGE 
Sbjct: 188 DIPPRAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSLKTIGGET 247

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           LL +AGI+   RAE LSI +F  + N++T
Sbjct: 248 LLEKAGIDGTRRAETLSISEFVTLANLIT 276


>gi|49475334|ref|YP_033375.1| dimethyladenosine transferase [Bartonella henselae str. Houston-1]
 gi|62900526|sp|Q6G438|RSMA_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49238140|emb|CAF27348.1| Dimethyladenosine transferase [Bartonella henselae str. Houston-1]
          Length = 276

 Score =  296 bits (758), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/268 (52%), Positives = 190/268 (70%), Gaps = 2/268 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ Y +   K +GQNFL DLN+  KIA  +G+++G  VIE+G GPG LT+ LL  G
Sbjct: 9   LREVINTYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALLAKG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYN 128
           A  V  IE+D++  P L +I   +P +L+II +DALK DF K F IS    RIIANLPYN
Sbjct: 69  A-IVTAIERDERCIPALLEIEKHYPQKLKIICNDALKQDFSKLFEISPEKPRIIANLPYN 127

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           IGT+LL NW+ A+ WPPF+ES+TL+FQ+EV +RITA+  S HYGRLSVLTGWRT A + F
Sbjct: 128 IGTQLLLNWLLAEPWPPFYESMTLMFQREVAQRITAKPQSAHYGRLSVLTGWRTIAKIAF 187

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           D+ P  F P+PK+TS+V+H IP   P+ C  + L  +T+ AFG+RRK LRQ+LK LGGE 
Sbjct: 188 DVPPQAFIPAPKITSSVVHIIPRTQPLTCSAQKLSFVTKTAFGQRRKMLRQNLKTLGGEV 247

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
           LL +AGI+   RAE L I +F  + N++
Sbjct: 248 LLEKAGIDETRRAETLEISEFVTLANLV 275


>gi|319407063|emb|CBI80700.1| dimethyladenosine transferase [Bartonella sp. 1-1C]
          Length = 276

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 142/269 (52%), Positives = 189/269 (70%), Gaps = 2/269 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ I++ YK+   K +GQNF+ DLN+  KIA  +G+++G  V+EIG GPG LT+ LL  G
Sbjct: 9   LRNIINKYKLQANKSLGQNFIFDLNLTAKIAHQAGNIEGKPVLEIGPGPGGLTRALLAKG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128
           A  V  IE+D++  P L +I   +P +L++I +DALK DF K F       RIIANLPYN
Sbjct: 69  A-IVTAIERDERCMPALLEIEEHYPQKLKLIFNDALKQDFPKLFEAYPEKPRIIANLPYN 127

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           IGT+LL NW+    WPPF+ES+TL+FQ+EV +RITA   SP+YGRLS+LTGWR+ A + F
Sbjct: 128 IGTQLLLNWLLTKAWPPFYESMTLMFQREVAKRITATSQSPYYGRLSILTGWRSIAKIAF 187

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           DI P  F P PKVTS+V+H IP L P+ C  + L  +T+ AFG+RRK LRQSLK +GGE 
Sbjct: 188 DIPPQAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSLKTIGGET 247

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           LL +AGI+   RAE LSI +F  + N++T
Sbjct: 248 LLEKAGIDGTRRAETLSISEFVTLANLIT 276


>gi|163868023|ref|YP_001609227.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476]
 gi|189028801|sp|A9IRW8|RSMA_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|161017674|emb|CAK01232.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476]
          Length = 276

 Score =  296 bits (757), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 145/270 (53%), Positives = 192/270 (71%), Gaps = 4/270 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  Y +   K +GQNFL DLN+  KIA  +G+++G  V+EIG GPG LT+ LL  G
Sbjct: 9   LREVIDTYGLQAHKSLGQNFLFDLNLTSKIAHQAGTIEGKPVLEIGPGPGGLTRALLAKG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPY 127
           A  V  IE+D++  P L +I   +PN+L++I +DALK DF K F  SSP   RIIANLPY
Sbjct: 69  A-IVTAIERDERCIPALLEIEKHYPNQLKLICNDALKQDFSKLFG-SSPEKPRIIANLPY 126

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NIGT+LL NW+  + WPPF+ES+TL+FQ+EV +RITA+  S HYGRLSVLTGWRT A + 
Sbjct: 127 NIGTQLLLNWLLVEPWPPFYESMTLMFQREVAKRITAKPQSSHYGRLSVLTGWRTIAKIA 186

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           FD+ P  F P+PKVTS+V+H IP   P+ C  + L  IT+ AFG+RRK LRQ+LK LGGE
Sbjct: 187 FDVPPQAFIPAPKVTSSVVHIIPRAQPLVCSAQKLSLITKTAFGQRRKMLRQNLKTLGGE 246

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
            +L +AGI+   RAE LSI +F  + N++T
Sbjct: 247 IILEKAGIDGTRRAETLSISEFVTLANLIT 276


>gi|23501569|ref|NP_697696.1| dimethyladenosine transferase [Brucella suis 1330]
 gi|82699572|ref|YP_414146.1| dimethyladenosine transferase [Brucella melitensis biovar Abortus
           2308]
 gi|148560508|ref|YP_001258664.1| dimethyladenosine transferase [Brucella ovis ATCC 25840]
 gi|161618651|ref|YP_001592538.1| dimethyladenosine transferase [Brucella canis ATCC 23365]
 gi|189023894|ref|YP_001934662.1| dimethyladenosine transferase [Brucella abortus S19]
 gi|225627179|ref|ZP_03785217.1| dimethyladenosine transferase [Brucella ceti str. Cudo]
 gi|225852202|ref|YP_002732435.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457]
 gi|237815135|ref|ZP_04594133.1| dimethyladenosine transferase [Brucella abortus str. 2308 A]
 gi|254688954|ref|ZP_05152208.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870]
 gi|254693436|ref|ZP_05155264.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya]
 gi|254697088|ref|ZP_05158916.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701465|ref|ZP_05163293.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513]
 gi|254704012|ref|ZP_05165840.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686]
 gi|254707614|ref|ZP_05169442.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10]
 gi|254709803|ref|ZP_05171614.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
 gi|254713807|ref|ZP_05175618.1| dimethyladenosine transferase [Brucella ceti M644/93/1]
 gi|254717135|ref|ZP_05178946.1| dimethyladenosine transferase [Brucella ceti M13/05/1]
 gi|254729984|ref|ZP_05188562.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292]
 gi|256031294|ref|ZP_05444908.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1]
 gi|256113218|ref|ZP_05454086.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159408|ref|ZP_05457186.1| dimethyladenosine transferase [Brucella ceti M490/95/1]
 gi|256254702|ref|ZP_05460238.1| dimethyladenosine transferase [Brucella ceti B1/94]
 gi|256257202|ref|ZP_05462738.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68]
 gi|256264290|ref|ZP_05466822.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369117|ref|YP_003106625.1| dimethyladenosine transferase [Brucella microti CCM 4915]
 gi|260168433|ref|ZP_05755244.1| dimethyladenosine transferase [Brucella sp. F5/99]
 gi|260545604|ref|ZP_05821345.1| dimethyladenosine transferase [Brucella abortus NCTC 8038]
 gi|260566739|ref|ZP_05837209.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40]
 gi|260754443|ref|ZP_05866791.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870]
 gi|260757662|ref|ZP_05870010.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292]
 gi|260761489|ref|ZP_05873832.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883472|ref|ZP_05895086.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68]
 gi|261213689|ref|ZP_05927970.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya]
 gi|261218950|ref|ZP_05933231.1| dimethyladenosine transferase [Brucella ceti M13/05/1]
 gi|261221882|ref|ZP_05936163.1| dimethyladenosine transferase [Brucella ceti B1/94]
 gi|261315104|ref|ZP_05954301.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10]
 gi|261317341|ref|ZP_05956538.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
 gi|261321551|ref|ZP_05960748.1| dimethyladenosine transferase [Brucella ceti M644/93/1]
 gi|261752008|ref|ZP_05995717.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513]
 gi|261754667|ref|ZP_05998376.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686]
 gi|261757895|ref|ZP_06001604.1| dimethyladenosine transferase [Brucella sp. F5/99]
 gi|265988379|ref|ZP_06100936.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1]
 gi|265994629|ref|ZP_06107186.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|265997845|ref|ZP_06110402.1| dimethyladenosine transferase [Brucella ceti M490/95/1]
 gi|297248052|ref|ZP_06931770.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196]
 gi|33516941|sp|Q8G1N0|RSMA_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122064285|sp|Q2YN15|RSMA_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221650|sp|A5VPL7|RSMA_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028802|sp|A9MA55|RSMA_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729760|sp|B2S4U1|RSMA_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807862|sp|C0RI23|RSMA_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|23347481|gb|AAN29611.1| dimethyladenosine transferase [Brucella suis 1330]
 gi|82615673|emb|CAJ10660.1| SAM (and some other nucleotide) binding motif:Ribosomal RNA adenine
           dimethylase [Brucella melitensis biovar Abortus 2308]
 gi|148371765|gb|ABQ61744.1| dimethyladenosine transferase [Brucella ovis ATCC 25840]
 gi|161335462|gb|ABX61767.1| dimethyladenosine transferase [Brucella canis ATCC 23365]
 gi|189019466|gb|ACD72188.1| SAM (and some other nucleotide) binding motif [Brucella abortus
           S19]
 gi|225618014|gb|EEH15058.1| dimethyladenosine transferase [Brucella ceti str. Cudo]
 gi|225640567|gb|ACO00481.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457]
 gi|237789972|gb|EEP64182.1| dimethyladenosine transferase [Brucella abortus str. 2308 A]
 gi|255999277|gb|ACU47676.1| dimethyladenosine transferase [Brucella microti CCM 4915]
 gi|260097011|gb|EEW80886.1| dimethyladenosine transferase [Brucella abortus NCTC 8038]
 gi|260156257|gb|EEW91337.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40]
 gi|260667980|gb|EEX54920.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292]
 gi|260671921|gb|EEX58742.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674551|gb|EEX61372.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870]
 gi|260873000|gb|EEX80069.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68]
 gi|260915296|gb|EEX82157.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya]
 gi|260920466|gb|EEX87119.1| dimethyladenosine transferase [Brucella ceti B1/94]
 gi|260924039|gb|EEX90607.1| dimethyladenosine transferase [Brucella ceti M13/05/1]
 gi|261294241|gb|EEX97737.1| dimethyladenosine transferase [Brucella ceti M644/93/1]
 gi|261296564|gb|EEY00061.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
 gi|261304130|gb|EEY07627.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10]
 gi|261737879|gb|EEY25875.1| dimethyladenosine transferase [Brucella sp. F5/99]
 gi|261741761|gb|EEY29687.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513]
 gi|261744420|gb|EEY32346.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686]
 gi|262552313|gb|EEZ08303.1| dimethyladenosine transferase [Brucella ceti M490/95/1]
 gi|262765742|gb|EEZ11531.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094550|gb|EEZ18359.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264660576|gb|EEZ30837.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1]
 gi|297175221|gb|EFH34568.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196]
 gi|326408701|gb|ADZ65766.1| SAM (and some other nucleotide) binding motif protein [Brucella
           melitensis M28]
 gi|326538425|gb|ADZ86640.1| dimethyladenosine transferase [Brucella melitensis M5-90]
          Length = 276

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 180/265 (67%), Gaps = 1/265 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG LT+ LL  G
Sbjct: 9   LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      RI+ANLPYN+
Sbjct: 69  A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD
Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKV S+V+H +P   P+PC  E+L +ITQ AFG+RRK LRQSLK +GG  L
Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQSLKSIGGAAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
           L + GI+   RAE LS+E+F  + N
Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272


>gi|62289644|ref|YP_221437.1| dimethyladenosine transferase [Brucella abortus bv. 1 str. 9-941]
 gi|81309439|sp|Q57E58|RSMA_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62195776|gb|AAX74076.1| KsgA, dimethyladenosine transferase [Brucella abortus bv. 1 str.
           9-941]
          Length = 276

 Score =  293 bits (749), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 180/265 (67%), Gaps = 1/265 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG LT+ LL  G
Sbjct: 9   LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      RI+ANLPYN+
Sbjct: 69  A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD
Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKV S+V+H +P   P+PC  E+L +ITQ AFG+RRK LRQSLK +GG  L
Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQSLKSIGGAAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
           L + GI+   RAE LS+E+F  + N
Sbjct: 248 LEKMGIDGTRRAETLSVEEFVALAN 272


>gi|17987550|ref|NP_540184.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|256044375|ref|ZP_05447279.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260563727|ref|ZP_05834213.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|265990793|ref|ZP_06103350.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|27151583|sp|Q8YG94|RSMA_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|17983253|gb|AAL52448.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|260153743|gb|EEW88835.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|263001577|gb|EEZ14152.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 276

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 180/265 (67%), Gaps = 1/265 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG LT+ LL  G
Sbjct: 9   LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      RI+ANLPYN+
Sbjct: 69  A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD
Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKLDSDHYGRLGVLAGWRTQAKIAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKV S+V+H +P   P+PC  E+L +ITQ AFG+RRK LRQSLK +GG  L
Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQSLKSIGGAAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
           L + GI+   RAE LS+E+F  + N
Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272


>gi|163842952|ref|YP_001627356.1| dimethyladenosine transferase [Brucella suis ATCC 23445]
 gi|189028803|sp|B0CL06|RSMA_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|163673675|gb|ABY37786.1| dimethyladenosine transferase [Brucella suis ATCC 23445]
          Length = 276

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 180/265 (67%), Gaps = 1/265 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG LT+ LL  G
Sbjct: 9   LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      RI+ANLPYN+
Sbjct: 69  A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD
Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKV S+V+H +P   P+PC  E+L +ITQ AFG+RRK LRQSLK +GG  L
Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQSLKSIGGGAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
           L + GI+   RAE LS+E+F  + N
Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272


>gi|306842053|ref|ZP_07474726.1| dimethyladenosine transferase [Brucella sp. BO2]
 gi|306287894|gb|EFM59314.1| dimethyladenosine transferase [Brucella sp. BO2]
          Length = 276

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 179/265 (67%), Gaps = 1/265 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG LT+ LL  G
Sbjct: 9   LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      RI+ANLPYN+
Sbjct: 69  A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPEPRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD
Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKV S+V+H +P   P+PC  E L +ITQ AFG+RRK LRQSLK +GG  L
Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEKLGQITQAAFGQRRKMLRQSLKSVGGAAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
           L + GI+   RAE LS+E+F  + N
Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272


>gi|306845283|ref|ZP_07477859.1| dimethyladenosine transferase [Brucella sp. BO1]
 gi|306274442|gb|EFM56249.1| dimethyladenosine transferase [Brucella sp. BO1]
          Length = 276

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 179/265 (67%), Gaps = 1/265 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG LT+ LL  G
Sbjct: 9   LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      RI+ANLPYN+
Sbjct: 69  A-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD
Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKV S+V+H +P   P+PC  E L +ITQ AFG+RRK LRQSLK +GG  L
Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEKLGQITQAAFGQRRKMLRQSLKSVGGAAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
           L + GI+   RAE LS+E+F  + N
Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272


>gi|90419497|ref|ZP_01227407.1| dimethyladenosine transferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336434|gb|EAS50175.1| dimethyladenosine transferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 279

 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 137/269 (50%), Positives = 183/269 (68%), Gaps = 2/269 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +L  + + PK+ +GQNFLLDLN+  +IA  +  L+G T++EIG GPG LT+ LL  G
Sbjct: 10  LRAVLEEHGLDPKRSLGQNFLLDLNLTGRIARQALPLEGATIVEIGPGPGGLTRALLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPY 127
           A  V+V+EKD +  P L+ I++ +P RL+I + DAL  D  +    + +  ++I+ANLPY
Sbjct: 70  ASHVVVVEKDSRCIPALEAIAAHYPGRLDIRRADALDFDLAEVAHPDGADALKIVANLPY 129

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+GT+LL NWI+   WPP W SLTL+FQ+EV ERI A   S HYGRL VL GWRT+A ++
Sbjct: 130 NVGTQLLLNWIATPQWPPVWSSLTLMFQREVAERIVAVPGSKHYGRLGVLAGWRTQAKIL 189

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           FD+ P  F P PKVTS+VI   P   P P  L +L+++T  AFG+RRK LRQSLK LGGE
Sbjct: 190 FDVPPEAFTPPPKVTSSVIQLRPRAEPEPASLAALERVTATAFGQRRKMLRQSLKSLGGE 249

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
            LL  A I+   RAE LSI +F R+ N L
Sbjct: 250 ALLVAADIDPQRRAETLSISEFVRLANGL 278


>gi|254504321|ref|ZP_05116472.1| dimethyladenosine transferase [Labrenzia alexandrii DFL-11]
 gi|222440392|gb|EEE47071.1| dimethyladenosine transferase [Labrenzia alexandrii DFL-11]
          Length = 283

 Score =  291 bits (745), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 138/267 (51%), Positives = 181/267 (67%), Gaps = 3/267 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  KK +GQNFLLDLN+  +IA S+GSL+  T++EIG GPG LT+ LL  G
Sbjct: 10  LRDVIAAHGLNAKKSLGQNFLLDLNLTSRIARSAGSLEDHTILEIGPGPGGLTRALLAAG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KV+ IEKD +  P L +I+  +P RLE+I+ DAL++D          +RI ANLPYN+
Sbjct: 70  AKKVVAIEKDSRCLPALAEIAYHYPGRLEVIEGDALEIDPVAITG-GGKVRIAANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NWI+   WPPFW SLTL+FQKEVGERI A   S  YGRL VL GWR    ++FD
Sbjct: 129 GTQLLINWITTPDWPPFWSSLTLMFQKEVGERIAAAPGSKAYGRLGVLAGWRCNGGILFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GE 247
           ISP  F P PKVTS V+H  P+  P+PC L SL+K+T  AFG+RRK LR SLK L    E
Sbjct: 189 ISPKAFTPPPKVTSAVVHLTPNPAPLPCNLSSLEKLTAAAFGQRRKMLRASLKSLSPDAE 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274
            L+ +AG++   RAE + I  F  + N
Sbjct: 249 RLIEKAGLKPTARAEEIDIAGFVNLAN 275


>gi|294852044|ref|ZP_06792717.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026]
 gi|294820633|gb|EFG37632.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026]
          Length = 276

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 179/265 (67%), Gaps = 1/265 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + ++PKK +GQNFL DLN+  KI   +G L    VIE+G GPG LT+ LL  G
Sbjct: 9   LREVIERHDLMPKKSLGQNFLFDLNLTSKITRQAGDLRDQPVIEVGPGPGGLTRALLAQG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      RI+ANLPYN+
Sbjct: 69  A-YVTAIERDDRCLEALAEIAAHYPGRLRIIVGDALEQDFTALFPEGPKPRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GWRT+A + FD
Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGWRTQAKIAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKV S+V+H +P   P+PC  E+L +ITQ AFG+RRK LRQSLK +GG  L
Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQSLKSIGGAAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
           L + GI+   RAE LS+E+F  + N
Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272


>gi|153009933|ref|YP_001371148.1| dimethyladenosine transferase [Ochrobactrum anthropi ATCC 49188]
 gi|166221683|sp|A6X265|RSMA_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|151561821|gb|ABS15319.1| dimethyladenosine transferase [Ochrobactrum anthropi ATCC 49188]
          Length = 278

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 179/265 (67%), Gaps = 1/265 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + ++PKK +GQNFL DLN+  KIA  +G+L    VIE+G GPG LT+ LL  G
Sbjct: 9   LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGNLQDQPVIEVGPGPGGLTRALLAQG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  IE+D++    L +I + +P RL II  DAL+ DF   F      RI+ANLPYN+
Sbjct: 69  A-YVTAIERDERCLDALAEIEAHYPGRLRIISGDALEQDFSALFPDGPKPRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A  +S HYGRL VL GWRT + + FD
Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVATPDSDHYGRLGVLAGWRTVSKISFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKV S+V+H IP  NP+PC   +L +ITQ AFG+RRK LRQSLK +GG  L
Sbjct: 188 VPPQAFTPPPKVMSSVVHIIPRENPLPCNANALGQITQAAFGQRRKMLRQSLKPVGGAEL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
           L + GI+   RAE LS+E+F  + N
Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272


>gi|254718818|ref|ZP_05180629.1| dimethyladenosine transferase [Brucella sp. 83/13]
 gi|265983803|ref|ZP_06096538.1| dimethyladenosine transferase [Brucella sp. 83/13]
 gi|306838740|ref|ZP_07471574.1| dimethyladenosine transferase [Brucella sp. NF 2653]
 gi|264662395|gb|EEZ32656.1| dimethyladenosine transferase [Brucella sp. 83/13]
 gi|306406142|gb|EFM62387.1| dimethyladenosine transferase [Brucella sp. NF 2653]
          Length = 276

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/274 (50%), Positives = 183/274 (66%), Gaps = 2/274 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+++N    L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG 
Sbjct: 1   MSIDNLP-PLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGA-YVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ EV ERI A+ +S HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQCEVAERIVAKPDSDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKV S+V+H +P   P+PC  E L +ITQ AFG+RRK LRQS
Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPREAPLPCRAEKLGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           LK +GG  LL + GI+   RAE LS+E+F  + N
Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALAN 272


>gi|319405488|emb|CBI79107.1| dimethyladenosine transferase [Bartonella sp. AR 15-3]
          Length = 276

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 139/269 (51%), Positives = 190/269 (70%), Gaps = 2/269 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ YK+   K +GQNF+L+LN+  KIA  +G+++G  V+EIG GPG LT+ LL  G
Sbjct: 9   LRNVINKYKLQANKSLGQNFILNLNLTTKIAHQAGNIEGKPVLEIGPGPGGLTRALLAKG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128
           A  V  IE+D++  P L +I   +P +L++I +DALK DF K F       RIIANLPYN
Sbjct: 69  A-IVTAIERDERCMPALLEIKEHYPQKLKLIFNDALKEDFSKLFEAYPEKPRIIANLPYN 127

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           IGT+LL NW+   +WPPF+ES+TL+FQ+EV +RITA   SP+YGRLS+LTGWR+ A + F
Sbjct: 128 IGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATSQSPYYGRLSILTGWRSIAKIAF 187

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           DI P  F P PKVTS+V+H IP   P+ C  + L  +T+ AFG+RRK LRQSLK +GG+ 
Sbjct: 188 DIPPQAFIPEPKVTSSVVHIIPRSQPLACSTKKLSLVTKIAFGQRRKMLRQSLKTIGGKT 247

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           LL +AGI+   RAE LSI +F  + N++T
Sbjct: 248 LLEKAGIDGTRRAETLSIFEFVTLANLIT 276


>gi|319898726|ref|YP_004158819.1| dimethyladenosine transferase [Bartonella clarridgeiae 73]
 gi|319402690|emb|CBI76236.1| dimethyladenosine transferase [Bartonella clarridgeiae 73]
          Length = 276

 Score =  288 bits (738), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 137/269 (50%), Positives = 188/269 (69%), Gaps = 2/269 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ +K+   K +GQNF+ DLN+  KIA  +G+++G  ++EIG GPG LT+ LL  G
Sbjct: 9   LRNVINTHKLQANKSLGQNFIFDLNLTTKIAHQAGNIEGKPILEIGPGPGGLTRALLAKG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128
           A  V  IE+D++  P L +I   +P +L++I +DALK DF K F       RIIANLPYN
Sbjct: 69  A-IVTAIERDERCMPALLEIEKHYPQKLKLIFNDALKQDFSKLFEAYPEKPRIIANLPYN 127

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           IGT+LL NW+   +WPPF+ES+TL+FQ+EV +RITA   SP+Y RLS+LTGWR+ A + F
Sbjct: 128 IGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATSQSPYYSRLSILTGWRSIAKIAF 187

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           DI P  F P PKVTS+V+H IP L P+ C  + L  +T+ AFG+RRK LRQS K +GGE 
Sbjct: 188 DIPPQAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSFKTIGGET 247

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           LL +AGI+   RAE LSI +F  + N++T
Sbjct: 248 LLEKAGIDGTRRAETLSISEFVTLANLIT 276


>gi|256060807|ref|ZP_05450967.1| dimethyladenosine transferase [Brucella neotomae 5K33]
 gi|261324799|ref|ZP_05963996.1| dimethyladenosine transferase [Brucella neotomae 5K33]
 gi|261300779|gb|EEY04276.1| dimethyladenosine transferase [Brucella neotomae 5K33]
          Length = 276

 Score =  288 bits (737), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 178/265 (67%), Gaps = 1/265 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG LT+ LL  G
Sbjct: 9   LREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      RI+ANLPYN+
Sbjct: 69  A-YVTAIERDDRCLEALTEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S  YGRL VL GWRT+A + FD
Sbjct: 128 GTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDRYGRLGVLAGWRTQAKIAFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P PKV S+V+H +P   P PC  E+L +ITQ AFG+RRK LRQSLK +GG  L
Sbjct: 188 VPPQAFTPPPKVMSSVVHIVPRETPPPCRAEALGQITQAAFGQRRKMLRQSLKSIGGAAL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
           L + GI+   RAE LS+E+F  + N
Sbjct: 248 LEKTGIDGTRRAETLSVEEFVALAN 272


>gi|328544016|ref|YP_004304125.1| ribosomal RNA small subunit methyltransferase A [polymorphum gilvum
           SL003B-26A1]
 gi|326413760|gb|ADZ70823.1| Ribosomal RNA small subunit methyltransferase A [Polymorphum gilvum
           SL003B-26A1]
          Length = 283

 Score =  288 bits (737), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 129/267 (48%), Positives = 180/267 (67%), Gaps = 3/267 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+  +IA ++  LD  TV+EIG GPG LT+ LL  G
Sbjct: 10  LREVIRAHGLDARKSLGQNFLLDLNLTSRIARAAAPLDACTVVEIGPGPGGLTRALLAAG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +VI IEKD++  P L +I+ ++P RL +++ DAL++D         P++I+ANLPYN+
Sbjct: 70  AGRVIAIEKDRRCLPALAEIADRYPGRLTVVEGDALEID-AATLAAGEPVKIVANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NWI+   WPPFW SLTL+FQ+EV ERI A      YGRL VL GWRT+A ++FD
Sbjct: 129 GTQLLINWITTPGWPPFWSSLTLMFQREVAERIVAAPGDKAYGRLGVLAGWRTQARILFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GE 247
           ISP  F P PKVTS V+  +P + P+PC L++L+++T  AFG+RRK LR SLK L    E
Sbjct: 189 ISPQAFTPPPKVTSAVVQLVPRVEPLPCSLKALERVTAAAFGQRRKMLRASLKTLDPQAE 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274
            L+ +AG+    RAE + I  F  +  
Sbjct: 249 RLIEEAGLIPTARAEEIDIAGFVALAE 275


>gi|49474096|ref|YP_032138.1| dimethyladenosine transferase [Bartonella quintana str. Toulouse]
 gi|62900523|sp|Q6G052|RSMA_BARQU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49239600|emb|CAF25957.1| Dimethyladenosine transferase [Bartonella quintana str. Toulouse]
          Length = 276

 Score =  288 bits (737), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 138/268 (51%), Positives = 188/268 (70%), Gaps = 2/268 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  Y +   K +GQNFL DLN+  KIA  +G+++G  VIE+G GPG LT+ LL  G
Sbjct: 9   LREVIDIYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALLAKG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128
           A  VI IE+D++  P L  I   +P +L++I +DALK +F K F       RIIANLPYN
Sbjct: 69  AL-VIAIERDERCIPALLAIEKHYPKKLKLICNDALKQNFSKLFETYPEKPRIIANLPYN 127

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           IGT+LL NW+  + WPPF+ES+TL+FQ+EV +RITA+  S +YGRLSVLTGWRT A + F
Sbjct: 128 IGTQLLLNWLLVEPWPPFYESMTLMFQREVAKRITAKPQSAYYGRLSVLTGWRTTAKIAF 187

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           D+ P  F P+PK+TS+V+H IP + P+ C  + L  +T+ AFG+RRK LRQ+LK LGGE 
Sbjct: 188 DVPPQAFIPAPKITSSVVHIIPRIQPLTCSAQKLSFVTKTAFGQRRKMLRQNLKTLGGEM 247

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
           LL +AGI+   RAE LSI +F  + N++
Sbjct: 248 LLAKAGIDGTRRAETLSISEFVTLANLV 275


>gi|239831516|ref|ZP_04679845.1| dimethyladenosine transferase [Ochrobactrum intermedium LMG 3301]
 gi|239823783|gb|EEQ95351.1| dimethyladenosine transferase [Ochrobactrum intermedium LMG 3301]
          Length = 278

 Score =  288 bits (737), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 136/274 (49%), Positives = 184/274 (67%), Gaps = 2/274 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+++N    L+ ++  + ++PKK +GQNFL DLN+  KIA  +GSL    VIE+G GPG 
Sbjct: 1   MSIDNLP-PLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGSLQEQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D++    L +I + +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGA-YVTAIERDERCLDALAEIEAHYPGRLRIISGDALEQDFSALFPDGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A  ++ HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVATPDTDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT + + FD+ P  F P PKV S+V+H IP  +P+PC   +L +ITQ AFG+RRK LRQS
Sbjct: 179 RTVSKISFDVPPQAFTPPPKVMSSVVHIIPREDPLPCDANALGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           LK +GG  LL + GI+   RAE LS+E+F  + N
Sbjct: 239 LKPVGGAELLAKTGIDGTRRAETLSVEEFVALAN 272


>gi|240850227|ref|YP_002971620.1| dimethyladenosine transferase [Bartonella grahamii as4aup]
 gi|240267350|gb|ACS50938.1| dimethyladenosine transferase [Bartonella grahamii as4aup]
          Length = 276

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/255 (54%), Positives = 181/255 (70%), Gaps = 2/255 (0%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL DLN+  KIA  +G+++G  V+EIG GPG LT+ LL  GA  V  IE+D++ 
Sbjct: 22  KSLGQNFLFDLNLTSKIAHHAGNIEGKPVLEIGPGPGGLTRALLAKGA-IVTAIERDERC 80

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWISAD 141
            P L +I   +P +L+II +DALK DF K F  S    RIIANLPYNIGT+LL NW+  +
Sbjct: 81  IPALLEIEKHYPKKLKIICNDALKQDFSKLFETSPEKPRIIANLPYNIGTQLLLNWLLTE 140

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            WPPF+ES+TL+FQ+EV +RITA+  S HYGRLSVLTGWRT A + FD+ P  F P PKV
Sbjct: 141 PWPPFYESMTLMFQREVAKRITAKPQSTHYGRLSVLTGWRTTAKIAFDVPPQAFIPIPKV 200

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
           TS+V+H IP   P+ C  + L  +T+ AFG+RRK LRQ+LK LGGE LL +AGI+   RA
Sbjct: 201 TSSVVHIIPRTQPLACSAQKLSLVTKTAFGQRRKMLRQNLKTLGGEVLLEKAGIDGTRRA 260

Query: 262 ENLSIEDFCRITNIL 276
           E LS+ +F  + +++
Sbjct: 261 ETLSVSEFVTLAHLV 275


>gi|121602690|ref|YP_988818.1| dimethyladenosine transferase [Bartonella bacilliformis KC583]
 gi|166221646|sp|A1US65|RSMA_BARBK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120614867|gb|ABM45468.1| dimethyladenosine transferase [Bartonella bacilliformis KC583]
          Length = 276

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/269 (51%), Positives = 185/269 (68%), Gaps = 2/269 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ Y +   K +GQNFL DLN+  KIA  +G+++G  VIEIG GPG LT+ LL  G
Sbjct: 9   LREVINAYGLQANKSLGQNFLFDLNLTSKIARQAGNIEGKPVIEIGPGPGGLTRALLAKG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128
           A  V VIE+D++  P L +I   +P +L +I DDALK D  K         RIIANLPYN
Sbjct: 69  A-IVTVIERDKRCLPALLEIEKHYPKKLNLIFDDALKQDLSKLSETYPEKPRIIANLPYN 127

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           IGT+LL NW+   +WPPF+ES+TL+FQ+EV +RITA   SPHY RLSVL GWRT A + F
Sbjct: 128 IGTQLLLNWLLTTSWPPFYESMTLMFQREVAKRITATPQSPHYSRLSVLAGWRTIAKIAF 187

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           D+ P  F P+PKVTS+VI+ IP   P+ C ++ L  +T+ AFG++RK LRQSLK +GG+ 
Sbjct: 188 DVPPQAFIPAPKVTSSVINIIPRPQPLACSVQKLSLVTKVAFGEKRKMLRQSLKTIGGKE 247

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           LL +AGI+   RAE L I +F  + N++T
Sbjct: 248 LLEKAGIDETRRAETLLIPEFITLANLMT 276


>gi|240140378|ref|YP_002964857.1| dimethyladenosine transferase [Methylobacterium extorquens AM1]
 gi|240010354|gb|ACS41580.1| dimethyladenosine transferase [Methylobacterium extorquens AM1]
          Length = 296

 Score =  283 bits (723), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 128/278 (46%), Positives = 186/278 (66%), Gaps = 8/278 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + + PKK +GQNFL DLN+  +IA S+G+L+G+TV+E+G GPG LT+ LL  G
Sbjct: 14  LREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRALLAAG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V+ IE+D +  P L +I++ +P RL++I  DA+  D         P+RI+ANLPYN+
Sbjct: 74  AKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVG-DGPVRIVANLPYNV 132

Query: 130 GTRLLFNWISADT----WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKA 184
            T LL  W+ ADT    WPP+WES TL+FQ+EV ERI A + +  +YGRL VL GWRT+A
Sbjct: 133 ATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLCGWRTQA 192

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           T++FD++P  F P PKVTS+V+H  P   P+PC +  L+++T+ AFG+RRK LRQSLK  
Sbjct: 193 TILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLRQSLKAA 252

Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +   LL  AG+    RAE + +  F  +  +L   +
Sbjct: 253 TPDPIRLLTAAGLPETARAEEIPVAGFVAMARVLEAGE 290


>gi|319408315|emb|CBI81968.1| dimethyladenosine transferase [Bartonella schoenbuchensis R1]
          Length = 276

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 137/269 (50%), Positives = 189/269 (70%), Gaps = 4/269 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ Y +   K +GQNFL DLN+  KIA+ +G++ G  VIE+G GPG LT+ LL  G
Sbjct: 9   LREVINTYGLQANKSLGQNFLFDLNLTSKIAQQAGNIAGKPVIEVGPGPGGLTRALLAKG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPY 127
           A  V  IE+D++    L DI   +P +L++I +DALK +F + F  + P +  IIANLPY
Sbjct: 69  A-IVTAIERDERCLQALLDIEKHYPQKLKVICNDALKQNFSEIFE-AYPEKPHIIANLPY 126

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NIGT+LL NWI  + WPPF++S+TL+FQ+EV +RITA  +SPHYGRLSVL GWR  A + 
Sbjct: 127 NIGTQLLLNWILTEPWPPFYKSMTLMFQREVAKRITATPHSPHYGRLSVLIGWRAIAKIA 186

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           FD+SP  F P PKVTS+V+H IP   P+PC  + L  +T+ AFG++RK LRQSLK +GGE
Sbjct: 187 FDVSPKAFTPIPKVTSSVVHIIPRPQPLPCSTQKLSLVTKAAFGQKRKMLRQSLKTIGGE 246

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
            LL ++GI+   RAE LSI +F  + N++
Sbjct: 247 MLLEKSGIDGTRRAETLSISEFVSLANLV 275


>gi|298291091|ref|YP_003693030.1| dimethyladenosine transferase [Starkeya novella DSM 506]
 gi|296927602|gb|ADH88411.1| dimethyladenosine transferase [Starkeya novella DSM 506]
          Length = 283

 Score =  282 bits (721), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 184/267 (68%), Gaps = 2/267 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +   K +GQNFLLDLN+  KIA ++G L+G+TVIE+G GPG LT+ LL LG
Sbjct: 9   LREVIREHGLSALKSLGQNFLLDLNLTSKIARTAGKLEGLTVIEVGPGPGGLTRALLALG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             KVI IE+D++    L ++++ +P RLE+++ DAL  D+      S+   I+ANLPYNI
Sbjct: 69  TDKVIAIERDRRCIAALAEVAAHYPGRLEVVEGDALAADYAALIPASTRAAIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+++D WPP++ESLTL+FQ+EV ERI A   S HYGRL+VLTGWR  A + FD
Sbjct: 129 ATPLLVGWLTSDPWPPWYESLTLMFQREVAERIVAASGSDHYGRLAVLTGWRANARIAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GE 247
           +    F P PKVTS+V+H +P   P+PC L++L+K+T+ AFG+RRK LRQSLK LG    
Sbjct: 189 VPASAFVPPPKVTSSVVHIVPREKPLPCELKALEKVTEAAFGQRRKMLRQSLKSLGVDAG 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274
            LL  AGIE   RAE + +E F  + N
Sbjct: 249 KLLAAAGIEPTERAERIPVEGFVALAN 275


>gi|304392010|ref|ZP_07373952.1| dimethyladenosine transferase [Ahrensia sp. R2A130]
 gi|303296239|gb|EFL90597.1| dimethyladenosine transferase [Ahrensia sp. R2A130]
          Length = 279

 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 130/268 (48%), Positives = 177/268 (66%), Gaps = 3/268 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  +++  KK +GQNFLLDLNI  KIA ++G L   TV+EIG GPG LT+ LL  G
Sbjct: 10  LREVIDRHELATKKSLGQNFLLDLNITMKIARAAGDLTRHTVLEIGPGPGGLTRALLASG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLP 126
           A+ V+ IE+D +  P+L +IS  +P RL +I+ DAL ++ E+       S P++I ANLP
Sbjct: 70  AKHVVAIERDARCIPVLAEISDAYPGRLTVIEGDALALNHEQVLADAGASGPVKIAANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI T L   WI+   WPPFW  +TL+FQ+EV +RI A+     +GRL VL GWR+ A +
Sbjct: 130 YNIATPLFTGWITGTNWPPFWNGMTLMFQREVAQRICAEPGDKAWGRLGVLAGWRSHADI 189

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            FD+SP  F+P PKVTS+V+   P   P+P  +  L+KITQ AFG+RRK LRQSLK + G
Sbjct: 190 AFDLSPQAFWPPPKVTSSVVMVQPRAEPLPVAVSDLEKITQAAFGQRRKMLRQSLKSMNG 249

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274
            + L   GIE   RAE L++EDF  + N
Sbjct: 250 ASRLEATGIEGTKRAEELAVEDFVALAN 277


>gi|163853045|ref|YP_001641088.1| dimethyladenosine transferase [Methylobacterium extorquens PA1]
 gi|163664650|gb|ABY32017.1| dimethyladenosine transferase [Methylobacterium extorquens PA1]
          Length = 296

 Score =  280 bits (717), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 128/278 (46%), Positives = 185/278 (66%), Gaps = 8/278 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + + PKK +GQNFL DLN+  +IA S+G+L+G+TV+E+G GPG LT+ LL  G
Sbjct: 14  LREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRALLAAG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V+ IE+D +  P L +I++ +P RL++I  DA+  D         P+RI+ANLPYN+
Sbjct: 74  AKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVG-DGPVRIVANLPYNV 132

Query: 130 GTRLLFNWISADT----WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKA 184
            T LL  W+ ADT    WPP+WES TL+FQ+EV ERI A + +  +YGRL VL GWRT+A
Sbjct: 133 ATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLCGWRTQA 192

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           T++FD++P  F P PKVTS+V+H  P   P+PC +  L+++T+ AFG+RRK LRQSLK  
Sbjct: 193 TILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLRQSLKAA 252

Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +   LL  AG+    RAE + +  F  +   L   +
Sbjct: 253 TPDPIRLLTAAGLPETARAEEIPVVGFVAMARALEAGE 290


>gi|188583141|ref|YP_001926586.1| dimethyladenosine transferase [Methylobacterium populi BJ001]
 gi|179346639|gb|ACB82051.1| dimethyladenosine transferase [Methylobacterium populi BJ001]
          Length = 291

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 127/274 (46%), Positives = 185/274 (67%), Gaps = 8/274 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + + PKK +GQNFL DLN+  +IA S+G+L+G+TV+E+G GPG LT+ LL  G
Sbjct: 14  LREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRALLAAG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V+ IE+D +  P L +I++ +P RL++I  DA+  D         P+RI+ANLPYN+
Sbjct: 74  AKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVG-DGPVRIVANLPYNV 132

Query: 130 GTRLLFNWISADT----WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKA 184
            T LL  W+ A+T    WPP+WES TL+FQ+EV ERI A + +  +YGRL VL GWRT+A
Sbjct: 133 ATVLLTGWLGAETRDERWPPWWESATLMFQREVAERIVADESDRANYGRLGVLCGWRTQA 192

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           T++FD++P  F P PKVTS+++H  P   P+PC + +L++IT+ AFG+RRK LRQSLK  
Sbjct: 193 TILFDVAPSAFVPPPKVTSSIVHLRPRPEPLPCRIAALERITRAAFGQRRKMLRQSLKAA 252

Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +   LL  AG+    RAE + +  F  +   L
Sbjct: 253 TPDPARLLAAAGLPETARAEEIPVAGFVALARAL 286


>gi|170743207|ref|YP_001771862.1| dimethyladenosine transferase [Methylobacterium sp. 4-46]
 gi|168197481|gb|ACA19428.1| dimethyladenosine transferase [Methylobacterium sp. 4-46]
          Length = 285

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 123/271 (45%), Positives = 183/271 (67%), Gaps = 4/271 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + ++P+K +GQNFL DLN+  +IA ++G L G+TV+E+G GPG LT+ LL  G
Sbjct: 14  LREVVRAHDLMPRKALGQNFLFDLNLTGRIARAAGPLAGVTVVEVGPGPGGLTRALLAEG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +V+ IE+D++  P L +I++ +P RL ++Q DAL  D       + P RI+ANLPYN+
Sbjct: 74  AARVVAIERDERALPALAEIAAHYPGRLTVVQADALAFDPRPLVG-AGPARIVANLPYNV 132

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKATMMF 188
           GT LL  W++A+ WPP+++SLTL+FQ+EV ERI A +++  +YGRL VL GWRT+A ++F
Sbjct: 133 GTALLTGWLAAEAWPPWFDSLTLMFQREVAERIVADERDRANYGRLGVLCGWRTQARILF 192

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247
           D+ P  F P PKVTS+V+  +P   P+PC + +L+ +T  AFG+RRK LRQSL+    + 
Sbjct: 193 DVPPSAFVPPPKVTSSVVRLVPRAAPLPCRVRALEAVTGAAFGQRRKMLRQSLRAATPDP 252

Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             LL  AGI    RAE + +  F  +   L 
Sbjct: 253 GPLLAAAGIPETARAEEVPVAGFVAMARALA 283


>gi|254562982|ref|YP_003070077.1| dimethyladenosine transferase [Methylobacterium extorquens DM4]
 gi|254270260|emb|CAX26254.1| dimethyladenosine transferase [Methylobacterium extorquens DM4]
          Length = 296

 Score =  280 bits (715), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 127/278 (45%), Positives = 185/278 (66%), Gaps = 8/278 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + + PKK +GQNFL DLN+  +IA S+G+L+G+TV+E+G GPG LT+ LL  G
Sbjct: 14  LREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRALLAAG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V+ IE+D +  P L +I++ +P RL++I  DA+  D         P+RI+ANLPYN+
Sbjct: 74  AKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVG-EGPVRIVANLPYNV 132

Query: 130 GTRLLFNWISADT----WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKA 184
            T LL  W+ ADT    WPP+W+S TL+FQ+EV ERI A + +  +YGRL VL GWRT+A
Sbjct: 133 ATVLLTGWLGADTRDEAWPPWWDSATLMFQREVAERIVADESDRANYGRLGVLCGWRTQA 192

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           T++FD++P  F P PKVTS+V+H  P   P+PC +  L+++T+ AFG+RRK LRQSLK  
Sbjct: 193 TILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLRQSLKAA 252

Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +   LL  AG+    RAE + +  F  +   L   +
Sbjct: 253 TPDPIRLLTAAGLPETARAEEIPVAGFVAMARALEAGE 290


>gi|220925669|ref|YP_002500971.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060]
 gi|219950276|gb|ACL60668.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060]
          Length = 283

 Score =  277 bits (708), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 124/270 (45%), Positives = 180/270 (66%), Gaps = 4/270 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + ++P+K +GQNFL DLN+  +IA ++G LDG+TV+E+G GPG LT+ LL  G
Sbjct: 9   LREVVRAHDLMPRKALGQNFLFDLNLTGRIARAAGPLDGVTVVEVGPGPGGLTRALLAEG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +VI IE+D +  P L +I++ +P RL +++ DAL  D         P RI+ANLPYN+
Sbjct: 69  AARVIAIERDPRALPALAEIAAHYPGRLTVVEADALAFDPRPLVG-GGPARIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKATMMF 188
           GT LL  W++ + WPP+W+SLTL+FQ+EV ERI A + +  +YGRL VL GWR +A ++F
Sbjct: 128 GTPLLTGWLAGEDWPPWWDSLTLMFQREVAERIVADEHDRANYGRLGVLCGWRAQARILF 187

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247
           D+ P  F P PKVTS+V+  +P  +P+PC + +L+ IT  AFG+RRK LRQSL+    + 
Sbjct: 188 DVPPSAFVPPPKVTSSVVRLVPRPSPLPCRVGALEAITGAAFGQRRKMLRQSLRAATPDP 247

Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             LL  AGI    RAE + +  F  +   L
Sbjct: 248 APLLAAAGIPETARAEEVPVAGFVAMAQAL 277


>gi|27379213|ref|NP_770742.1| dimethyladenosine transferase [Bradyrhizobium japonicum USDA 110]
 gi|33516930|sp|Q89MU0|RSMA_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|27352364|dbj|BAC49367.1| rRNA-adenine N6,N6-dimethyltransferase [Bradyrhizobium japonicum
           USDA 110]
          Length = 284

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 181/271 (66%), Gaps = 3/271 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+  +IA ++  LD  T++EIG GPG LT+ LL LG
Sbjct: 10  LREVIRQHALSARKSLGQNFLLDLNLTARIARAAAPLDNSTIVEIGPGPGGLTRALLALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IE D++  P L+DIS+++P RLEI+  DA+  D     N  S  +I+ANLPYNI
Sbjct: 70  ARRVVAIEHDERAIPALQDISARYPGRLEIVHGDAMTFDPRPLLNGES-AKIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T+LL NW++ + WPP+++ + L+FQ+EVGERI A+++   YGRL VL  WR +  ++FD
Sbjct: 129 ATQLLINWLTTEPWPPWYDMMVLMFQREVGERIVAREDEEAYGRLGVLANWRCETKILFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247
           I+P  F P PKVTS+V+  +P   P+PC  + L+++   AFG+RRK LRQSLK LG +  
Sbjct: 189 IAPSAFVPPPKVTSSVVRLVPRAEPLPCDRKMLEQVAAAAFGQRRKMLRQSLKSLGVDPA 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L   AG++   RAE + I  F  +   L D
Sbjct: 249 RLAQAAGVDATRRAETIPISGFVAMARELAD 279


>gi|299133709|ref|ZP_07026903.1| dimethyladenosine transferase [Afipia sp. 1NLS2]
 gi|298591545|gb|EFI51746.1| dimethyladenosine transferase [Afipia sp. 1NLS2]
          Length = 283

 Score =  271 bits (694), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 127/280 (45%), Positives = 181/280 (64%), Gaps = 3/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  Y + P+K +GQNFL DLN+  +IA ++G LD  TVIEIG GPG 
Sbjct: 1   MSQIDDLPPLREVIRKYDLAPRKSLGQNFLFDLNLTARIARAAGPLDDATVIEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA++VI +E+D +  P L+DI+  +P RLEI+  DA+  D     +  +  R
Sbjct: 61  LTRALLATGAKRVIAVERDDRAIPALEDIARHYPGRLEIVHGDAIDFDPTTMLD-GARAR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W++AD WPP+++ + L+FQ+EV ERI AQ+N   YGRL VL  W
Sbjct: 120 IVANLPYNIATLLLTGWLTADPWPPWFDMMVLMFQREVAERIVAQENDDAYGRLGVLANW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+  ++FDI+P  F P PKVTS+V+  +P   P+ C   +L+++   AF +RRK LRQS
Sbjct: 180 RTETKILFDIAPGAFVPPPKVTSSVVRLVPRAKPLSCSRRALEQVAAAAFNQRRKMLRQS 239

Query: 241 LKRLGGENLL--HQAGIETNLRAENLSIEDFCRITNILTD 278
           LK LG +  L    A I+   RAE +SI  F  + N L++
Sbjct: 240 LKPLGVDPALLTEAARIDPTRRAETVSIAGFVAMANRLSE 279


>gi|23010583|ref|ZP_00051221.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 263

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 122/259 (47%), Positives = 175/259 (67%), Gaps = 8/259 (3%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQNFL DLN+  +IA ++G+LDG+TV+E+G GPG LT+ LL  GA++V+ IE+D +  P
Sbjct: 2   LGQNFLFDLNLTGRIARAAGALDGVTVVEVGPGPGGLTRALLAAGAQRVVAIERDPRALP 61

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT-- 142
            L +I++ +P RL++I  DA+  D         P+RI+ANLPYN+ T LL  W+ A+T  
Sbjct: 62  ALAEIAAHYPGRLDVIDADAVGFDPRPLVG-DGPVRIVANLPYNVATVLLTGWLGAETRD 120

Query: 143 --WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             WPP+WES TL+FQ+EV ERI A + +  +YGRL VL GWRT+AT++FD++P  F P P
Sbjct: 121 EVWPPWWESATLMFQREVAERIVADEGDRANYGRLGVLCGWRTQATILFDVAPSAFVPPP 180

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIET 257
           KVTS+++H  P   P+PC +  L+++T+ AFG+RRK LRQSLK    +   LL  AG+  
Sbjct: 181 KVTSSIVHLRPRPAPLPCRIADLERVTRAAFGQRRKMLRQSLKAATPDPARLLAAAGLPE 240

Query: 258 NLRAENLSIEDFCRITNIL 276
             RAE + +  F  +   L
Sbjct: 241 TARAEEIPVAGFVALARAL 259


>gi|90423811|ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
 gi|119365055|sp|Q215S4|RSMA_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|90105825|gb|ABD87862.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
          Length = 286

 Score =  268 bits (685), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 126/275 (45%), Positives = 181/275 (65%), Gaps = 3/275 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+L +IA ++G LDG TVIEIG GPG LT+ LL LG
Sbjct: 10  LRDVIKRHDLSARKSLGQNFLLDLNLLTRIARAAGPLDGATVIEIGPGPGGLTRALLALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A KVI IE+D++    L++I++ +P RLEI+  DA   D        +  +I+ANLPYNI
Sbjct: 70  AAKVIAIERDERALGALQEIAAHYPGRLEIVCADATIYDPRPLLG-GARAKIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+S + WPP+++++ L+FQ+EV ERI A+++   YGRL+VL  WR +  ++FD
Sbjct: 129 ATPLLIGWLSIEPWPPWYDTMVLMFQREVAERIVAREDDEAYGRLAVLANWRAETKLLFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247
           ISP  F P PKVTS+V+  +P   P PC    L+++   AFG+RRK LRQSLK LG +  
Sbjct: 189 ISPAAFVPQPKVTSSVVRLVPRETPEPCDRRMLEQVAAAAFGQRRKMLRQSLKPLGVDPA 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            L   AG++   RAE +++  F  +   LTD + I
Sbjct: 249 RLAAAAGVDPTRRAETIAVSGFVAMARELTDIRAI 283


>gi|148255223|ref|YP_001239808.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1]
 gi|166221648|sp|A5EIA8|RSMA_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146407396|gb|ABQ35902.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1]
          Length = 286

 Score =  268 bits (684), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 123/274 (44%), Positives = 180/274 (65%), Gaps = 3/274 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  +++  +K +GQNFLLDLN+  +IA ++G L+  TV+EIG GPG LT+ LL LG
Sbjct: 10  LREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALLALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR VI +E D++  P L+ I+ ++P RLEI+  DA   D   +   S+  +I+ANLPYNI
Sbjct: 70  ARHVIAVEHDERAIPALQAIAERYPGRLEIVCTDARTFDVRPYLG-STKAKIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+SA+ WPP+++ + L+FQ+EV ERI A++N   YGRL VL  WR +  ++FD
Sbjct: 129 ATHLLIGWLSAEPWPPWYDMMVLMFQREVAERIVARENEEAYGRLGVLANWRCETKILFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247
           ISP  F P PKVTS+V+  +P   P PC   +L+++   AFG+RRK LRQSLK L  +  
Sbjct: 189 ISPSAFVPPPKVTSSVVRLVPRTAPEPCDRRALEQVAAAAFGQRRKMLRQSLKSLPTDPA 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            L   AG++   RAE + +  F  +   LT+++D
Sbjct: 249 RLAAAAGVDPTRRAETIPVSGFVAMARELTNSRD 282


>gi|154253780|ref|YP_001414604.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1]
 gi|154157730|gb|ABS64947.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1]
          Length = 281

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/276 (46%), Positives = 182/276 (65%), Gaps = 11/276 (3%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ Y + P+K +GQNFLLDLN+  +IA ++G LDG  V+E+G GPG LT+ LL  G
Sbjct: 11  LREVIARYGLAPQKSLGQNFLLDLNLTGRIARAAGVLDGYDVVEVGPGPGGLTRALLDNG 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+VI IE+D++    L++IS+ +P RL I++ DAL+VD +    ++SP RI+ANLPYN+
Sbjct: 71  ARRVIAIERDRRCIAALEEISAAYPGRLVIVEGDALEVDMKSL--VTSPARIVANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+  + WP +++SLTL+FQ+EV ERI AQ     YGRL+VL  WR KA ++FD
Sbjct: 129 GTPLLVGWLQTEPWPAWFDSLTLMFQREVAERIVAQPGGKAYGRLAVLAQWRAKAQILFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           +    F P P VTS+V+  IP   P+    P  LE+   +   AFG+RRK LR SL+ L 
Sbjct: 189 VDRRAFTPPPSVTSSVVELIPRAVPLAEANPRVLEA---VVAAAFGQRRKMLRSSLRTLT 245

Query: 246 GEN--LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             +  LL +AGI+   RAE LS+E FC +     + 
Sbjct: 246 PHSLPLLEKAGIDPTQRAEELSVEQFCALARAFAEK 281


>gi|218531855|ref|YP_002422671.1| dimethyladenosine transferase [Methylobacterium chloromethanicum
           CM4]
 gi|218524158|gb|ACK84743.1| dimethyladenosine transferase [Methylobacterium chloromethanicum
           CM4]
          Length = 296

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/278 (46%), Positives = 184/278 (66%), Gaps = 8/278 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + + PKK +GQNFL DLN+  +IA S+G+L+G+TV+E+G GPG LT+ LL  G
Sbjct: 14  LREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRALLAAG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V+ IE+D +  P L +I++ +P RL++I  DA+  D         P+RI+ANLPYN+
Sbjct: 74  AKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVG-EGPVRIVANLPYNV 132

Query: 130 GTRLLFNWISADT----WPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKA 184
            T LL  W+ ADT    WPP+WES TL+FQ+EV ERI A + +  +YGRL VL GWRT+A
Sbjct: 133 ATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLCGWRTQA 192

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           T++FD++P  F P PKVTS+V+H  P   P PC +  L+++T+ AFG+RRK LRQSLK  
Sbjct: 193 TILFDVAPSAFVPPPKVTSSVVHLRPRPEPPPCRIADLERVTRAAFGQRRKMLRQSLKAA 252

Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +   LL  AG+    RAE + +  F  +   L   +
Sbjct: 253 TPDPIRLLTAAGLPETARAEEIPVAGFVAMARALEAGE 290


>gi|170746986|ref|YP_001753246.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM
           2831]
 gi|226732597|sp|B1LVB8|RSMA_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|170653508|gb|ACB22563.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM
           2831]
          Length = 292

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/277 (44%), Positives = 179/277 (64%), Gaps = 4/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + + PKK +GQNFL DLN+  +IA ++G L G+TV+E+G GPG 
Sbjct: 1   MSAGDGLPPLREVVARHGLEPKKALGQNFLYDLNLTGRIARAAGPLAGVTVVEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA +V+ IE+D +  P L +I++ +P RLE++  DAL  D        +P R
Sbjct: 61  LTRALLAEGAARVVAIERDPRALPALAEIAAHYPGRLEVVDADALAFDPRPLVG-DAPAR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTG 179
           I+ANLPYN+GT LL  W+  + WPP+W+   L+FQ+EV ERI A  +    YGRL VL G
Sbjct: 120 IVANLPYNVGTALLTGWLDGEAWPPWWDQAVLMFQREVAERIVAGPEERADYGRLGVLCG 179

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           WRT+A ++FD+SP  F P PKVTS+V+  +P   P+PC   +L+ +T+ AFG+RRK LRQ
Sbjct: 180 WRTEAEILFDVSPSAFVPPPKVTSSVVRLVPRAQPLPCRAGALEAVTRAAFGQRRKMLRQ 239

Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITN 274
           SLK L     +LL  AG+    RAE + +  F  + N
Sbjct: 240 SLKALTPAAGDLLAAAGLSETARAEEIPVAGFVDLAN 276


>gi|99080785|ref|YP_612939.1| dimethyladenosine transferase [Ruegeria sp. TM1040]
 gi|118600897|sp|Q1GI39|RSMA_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|99037065|gb|ABF63677.1| dimethyladenosine transferase [Ruegeria sp. TM1040]
          Length = 280

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/279 (45%), Positives = 180/279 (64%), Gaps = 5/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L G  V+EIG GPG 
Sbjct: 1   MSAIDNLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GARK++ IEKDQ+  P L+DI++ +P RLE+I  DAL++D     +++ PIR
Sbjct: 61  LTRGLLSEGARKILAIEKDQRCLPALEDIAAAYPGRLEVINGDALEID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  S  YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPKEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +A +   + P  F P PKV+S V+H      P  P     L ++   AF +RRK LR 
Sbjct: 179 RAEARIALSLPPGAFTPPPKVSSAVVHLTALPEPRYPADAAILSRVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           SLK +    E+ L+ AGI    RAE +S+EDFC +   L
Sbjct: 239 SLKGVSPQIEDHLNAAGIPPTERAEQVSVEDFCALARSL 277


>gi|316933703|ref|YP_004108685.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1]
 gi|315601417|gb|ADU43952.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1]
          Length = 287

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 124/273 (45%), Positives = 182/273 (66%), Gaps = 3/273 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+  +IA ++G LDG+TV+EIG GPG LT+ LL  G
Sbjct: 10  LREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLDGVTVVEIGPGPGGLTRALLATG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++VI IE+D++    L++I++ +P RLEI+  DA++ D     N     RI+ANLPYNI
Sbjct: 70  AKRVIAIERDERALGALEEIAAHYPGRLEIVSGDAMEFDPRPLLN-GERARIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+ A+ WPP++E + L+FQ+EV +RI A ++   YGRL+VL  WR +  M+FD
Sbjct: 129 ATPLLIGWLCAEPWPPWYEMMVLMFQREVAQRIVAHQDDDAYGRLAVLANWRAETQMLFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247
           ISP  F P PKVTS+V+  +P   P PC   +L+++   AFG+RRK LRQSLK LG +  
Sbjct: 189 ISPSAFVPPPKVTSSVVRLVPRAQPEPCDRAALEQVAAAAFGQRRKMLRQSLKSLGVDPA 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            L   AGI+   RAE + +  F  + N L++++
Sbjct: 249 QLTAAAGIDPARRAETVPVSGFVAMANELSNSR 281


>gi|83952311|ref|ZP_00961043.1| dimethyladenosine transferase [Roseovarius nubinhibens ISM]
 gi|83837317|gb|EAP76614.1| dimethyladenosine transferase [Roseovarius nubinhibens ISM]
          Length = 280

 Score =  265 bits (677), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 181/271 (66%), Gaps = 5/271 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + ++ +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG LT+ LL  G
Sbjct: 10  LRQVINDHDLVARKSLGQNFLLDLNLTAKIARQAGDLSTADVLEIGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L +I++ +P RLE+I  DAL+VD     +++ PI I ANLPYN+
Sbjct: 70  ARRVLAIEKDSRCLPALAEIAAAYPGRLEVINGDALEVD--PLAHLTPPIHIAANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQ+EV ERITA+  S  YGRL++L  WR +A ++  
Sbjct: 128 GTELLVRWLTPQEWPPFWQSLTLMFQREVAERITAKPGSKAYGRLALLAQWRAEARIVMS 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P+PKV+S V+H      P  P   + L+++  +AF +RRK LR +LK +    
Sbjct: 188 LPPEAFTPAPKVSSAVVHLRALPEPRFPADPKMLERVVAQAFNQRRKMLRAALKSMAPDI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           E+ L+ AGIE   RAE LS+E+FC +  +++
Sbjct: 248 EDRLNAAGIEPTRRAETLSLEEFCALARVMS 278


>gi|254473433|ref|ZP_05086830.1| dimethyladenosine transferase [Pseudovibrio sp. JE062]
 gi|211957549|gb|EEA92752.1| dimethyladenosine transferase [Pseudovibrio sp. JE062]
          Length = 279

 Score =  265 bits (676), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 124/267 (46%), Positives = 175/267 (65%), Gaps = 4/267 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  +K +GQNFLLDLN+  +IA S+G L   TV+E+G GPG LT+ LL  G
Sbjct: 10  LREVIAEHGLDARKSLGQNFLLDLNLTSRIARSAGDLSDCTVVEVGPGPGGLTRALLAAG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI IEKD +  P L  IS  +  +LE+I+ DALK +  +  +   PI+IIANLPYN+
Sbjct: 70  AKKVIAIEKDTRCLPALAQISEHYNGKLEVIEGDALKYNPAELAD--GPIKIIANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL  W++ + WPPFW SLTL+FQKEVG+RI A+     YGRL VL  WR    ++FD
Sbjct: 128 GTQLLLGWLTTEEWPPFWSSLTLMFQKEVGQRIVAETGDKAYGRLGVLANWRCHTDILFD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE 247
           ++P  F P PKVTS V+   P   P+ C L++L+++T  AFG+RRK LR SLK L    E
Sbjct: 188 LNPKAFTPPPKVTSAVVQLHPREKPLDCPLKALERVTAHAFGQRRKMLRASLKGLKPNAE 247

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274
             +  AG++   RAE + +  F  + +
Sbjct: 248 ARIEAAGLKPTARAEEIDVTGFVALAH 274


>gi|259418690|ref|ZP_05742607.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B]
 gi|259344912|gb|EEW56766.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B]
          Length = 280

 Score =  264 bits (675), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 128/273 (46%), Positives = 174/273 (63%), Gaps = 5/273 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L G  V+EIG GPG LT+ LL+ G
Sbjct: 10  LREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGGLTRGLLSEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           ARKV+ IEKDQ+  P L +I+  HP RLE+I  DALK+D     +++ PIR+ ANLPYN+
Sbjct: 70  ARKVLAIEKDQRCLPALAEIAEAHPGRLEVINGDALKID--PLAHLTPPIRVAANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  S  YGRL++L  WR +A +   
Sbjct: 128 GTELLVRWLTPKDWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQWRAEAKIALS 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S V+H      P  P     L ++   AF +RRK LR SLK +    
Sbjct: 188 LPPGAFTPPPKVSSAVVHLTALPEPRFPADAAILSRVVAAAFNQRRKMLRASLKGVSPQI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           E+ L+ AGI    RAE +S+E FC +   L   
Sbjct: 248 EDHLNAAGIPPTERAEQVSLEGFCALARSLAQT 280


>gi|310816142|ref|YP_003964106.1| dimethyladenosine transferase [Ketogulonicigenium vulgare Y25]
 gi|308754877|gb|ADO42806.1| dimethyladenosine transferase [Ketogulonicigenium vulgare Y25]
          Length = 281

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/271 (46%), Positives = 178/271 (65%), Gaps = 5/271 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  KK +GQNFLLDLN+  KIA  +G L G  V+EIG GPG LT+ LL  G
Sbjct: 10  LREVIATHGLSAKKALGQNFLLDLNLTAKIARQAGDLSGSDVLEIGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD++  P L++I+  +P R   IQ DAL+VD     +++ PIR+ ANLPYNI
Sbjct: 70  ARRVLSIEKDERCIPALEEIADAYPGRFSYIQGDALQVD--PLAHLTPPIRVAANLPYNI 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQ+EV ERITA+  S HYGRL++L+ WR  A ++ D
Sbjct: 128 GTELLIRWLTPPQWPPFWQSLTLMFQREVAERITAKPGSNHYGRLAILSQWRADARIVLD 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S V+H      P  P  L+ L+++T  AFG+RRK LR SL+ L    
Sbjct: 188 LPPQAFTPPPKVSSAVVHLTALPAPRFPADLKVLERVTAAAFGQRRKMLRASLRGLAPDI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           E++L    I+   RAE + +E FC +   + 
Sbjct: 248 EDILTSVDIKPTERAEQIDLEHFCALARAIA 278


>gi|114766148|ref|ZP_01445152.1| dimethyladenosine transferase [Pelagibaca bermudensis HTCC2601]
 gi|114541608|gb|EAU44650.1| dimethyladenosine transferase [Roseovarius sp. HTCC2601]
          Length = 278

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/280 (45%), Positives = 179/280 (63%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  KK +GQNFLLDLN+  KIA  +G L G+ V+EIG GPG 
Sbjct: 1   MSAIDGLPPLREVIASHDLSAKKSLGQNFLLDLNLTAKIARQAGDLSGMDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GARKV+ IEKD +  P L +I+  +P+RLE+I  DAL++D     +++ PI 
Sbjct: 61  LTRGLLAEGARKVLAIEKDTRCLPALAEIAGAYPDRLEVISGDALQID--PLAHLTPPIA 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++ + WPPFW++LTL+FQ+EV ERI AQ  S  YGRL+VL  W
Sbjct: 119 ICANLPYNVGTELLVRWLTPEDWPPFWQTLTLMFQREVAERIVAQPGSKAYGRLAVLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           RT+A ++  + P  F P PKV+S V+H      P  P    +L+++   AF +RRK LR 
Sbjct: 179 RTEARIVLSLPPGAFTPPPKVSSAVMHLRALPEPRFPAERAALERVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK L    E+ L  AGI    RAE +S+E FC +   L 
Sbjct: 239 ALKGLAPDIEDRLEAAGIAPTERAEQVSLEQFCALARALA 278


>gi|119383648|ref|YP_914704.1| dimethyladenosine transferase [Paracoccus denitrificans PD1222]
 gi|166221685|sp|A1B0G4|RSMA_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119373415|gb|ABL69008.1| dimethyladenosine transferase [Paracoccus denitrificans PD1222]
          Length = 282

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 130/280 (46%), Positives = 175/280 (62%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  KK +GQNFLLDLN+  KIA ++G L G  VIE+G GPG 
Sbjct: 1   MSAIDGLPPLREVIARHDLRAKKQLGQNFLLDLNLTAKIARAAGDLTGCDVIEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR V+ IEKD +  P L +I++ +P RLE+I  DAL++D     +++ PIR
Sbjct: 61  LTRGLLAEGARHVLAIEKDARALPALAEIATAYPGRLEVIHGDALEID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W++   WPPFW+SLTL+FQKEV ERI AQ     YGRL+VL  W
Sbjct: 119 IVANLPYNVGTELLIRWLTPAAWPPFWQSLTLMFQKEVAERIVAQPGGKAYGRLAVLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           RT+A ++  + P  F P+PKV S V+H      P  P     L ++    F +RRK LR 
Sbjct: 179 RTEARIVMTLPPEAFVPAPKVHSAVVHLTALPGPRYPADPAVLNRVVAAGFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L    E LL QAGI    RAE + +E FC +   L 
Sbjct: 239 SLKGLHPEIEALLIQAGIAPTARAEEIGLEQFCALARGLA 278


>gi|209885479|ref|YP_002289336.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5]
 gi|226732605|sp|B6JGM4|RSMA_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|209873675|gb|ACI93471.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5]
          Length = 282

 Score =  262 bits (669), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 123/280 (43%), Positives = 176/280 (62%), Gaps = 3/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  Y +  +K +GQNFL DLN+  +IA ++G LD +TVIEIG GPG 
Sbjct: 1   MSQIDDLPPLREVIRKYDLFARKSLGQNFLFDLNLTARIARAAGPLDDVTVIEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA++VI +E+D++  P L++I+ ++P RLEII  DA   D           R
Sbjct: 61  LTRALLATGAKRVIAVERDERAIPALEEIARRYPGRLEIIHGDATTFDPTPLLQ-GERAR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+S + WPP+++ + L+FQ+EV ERI A +N   YGRL VL  W
Sbjct: 120 IVANLPYNIATLLLTGWLSVEPWPPWFDMMVLMFQREVAERIVATENDEAYGRLGVLANW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  ++FDI+P  F P PKV S+V+   P   P+ C   +L+++T  AF +RRK LRQS
Sbjct: 180 RAETKILFDIAPGAFVPPPKVMSSVVRLAPRAAPLACSRRALEQVTAAAFNQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK LG +   L   AG++   RAE +SI  F  + N L +
Sbjct: 240 LKALGVDPAALAEAAGVDPTRRAETVSIAGFVAMANRLIE 279


>gi|39936129|ref|NP_948405.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009]
 gi|192291847|ref|YP_001992452.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1]
 gi|62900541|sp|Q6N5B4|RSMA_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732615|sp|B3Q9S4|RSMA_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|39649983|emb|CAE28507.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009]
 gi|192285596|gb|ACF01977.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1]
          Length = 287

 Score =  262 bits (669), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 124/275 (45%), Positives = 181/275 (65%), Gaps = 3/275 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+  +IA ++G L+G+TV+EIG GPG LT+ LL  G
Sbjct: 10  LREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLEGVTVVEIGPGPGGLTRALLATG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++VI IE+D++    L++I++ +P RL+II  DA++ D     N     RI+ANLPYNI
Sbjct: 70  AKRVIAIERDERALGALEEIAAHYPGRLDIISGDAMEFDPRPLLN-GDRARIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+ A+ WPP++E + L+FQ+EV +RI A  +   YGRL+VL  WR +  M+FD
Sbjct: 129 ATPLLIGWLCAEPWPPWYEMMVLMFQREVAQRIVAHHDDDAYGRLAVLANWRAETQMLFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247
           ISP  F P PKVTS+V+  +P   P PC   +L+++   AFG+RRK LRQSLK LG +  
Sbjct: 189 ISPSAFVPPPKVTSSVVRLVPRAQPEPCDRAALEQVAAAAFGQRRKMLRQSLKSLGVDPA 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            L   AGI+   RAE + +  F  + N L +++ I
Sbjct: 249 QLTAAAGIDPARRAETVPVSGFVAMANELANSRAI 283


>gi|294678211|ref|YP_003578826.1| dimethyladenosine transferase [Rhodobacter capsulatus SB 1003]
 gi|294477031|gb|ADE86419.1| dimethyladenosine transferase [Rhodobacter capsulatus SB 1003]
          Length = 280

 Score =  261 bits (668), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/271 (45%), Positives = 177/271 (65%), Gaps = 5/271 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ ++++ KK +GQNFLLDLN+  KIA ++G L G  V+E+G GPG LT+ LL  G
Sbjct: 10  LREVIATHELVAKKALGQNFLLDLNLTAKIARAAGDLTGCDVLEVGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ +EKD +  P L +I++ +P RLE+I  DAL VD     +++ PIRI ANLPYN+
Sbjct: 70  ARRVLAVEKDSRCLPALAEIAAHYPGRLEVINGDALAVDV--LAHLTPPIRIAANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQKEV ERI A+  + HYGRL++L  WR +A ++  
Sbjct: 128 GTELLIRWLTPAVWPPFWQSLTLMFQKEVAERIVAKPGTDHYGRLALLAQWRAEAKIVMV 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P+PKV S V+H      P  P     L+++    F +RRK LR SLK +    
Sbjct: 188 LPPEAFTPAPKVHSAVVHLTALPAPRYPADPAVLERVVAAGFNQRRKMLRSSLKGVHPRI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           + LL +AGI    RAE +S+E FC +  ++ 
Sbjct: 248 DALLEEAGIPPTERAERVSLEQFCHLARLVA 278


>gi|146340299|ref|YP_001205347.1| dimethyladenosine transferase [Bradyrhizobium sp. ORS278]
 gi|166221649|sp|A4YT90|RSMA_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146193105|emb|CAL77116.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium
           sp. ORS278]
          Length = 286

 Score =  261 bits (667), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 124/274 (45%), Positives = 178/274 (64%), Gaps = 3/274 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  +++  +K +GQNFLLDLN+  +IA ++G L+  TV+EIG GPG LT+ LL LG
Sbjct: 10  LREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALLALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR VI +E D++  P L+ I+ ++P RLEI+  DA   D   +   S+  +I+ANLPYNI
Sbjct: 70  ARHVIAVEHDERAIPALRTIADRYPGRLEIVYTDARTFDVRPYLG-STKAKIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+SA+ WPP++E + L+FQ+EV ERI A +N   YGRL VL  WR +  ++FD
Sbjct: 129 ATHLLIGWLSAEPWPPWYEMMVLMFQREVAERIVATENEEAYGRLGVLANWRCETKILFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE 247
           ISP  F P PKVTS+V+  +P   P PC   +L+++   AFG+RRK LRQSLK L     
Sbjct: 189 ISPSAFVPPPKVTSSVVRLVPRPAPEPCDRRALEQVAAAAFGQRRKMLRQSLKSLPADPA 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            L   AGI+   RAE + +  F  +   LT++++
Sbjct: 249 RLAAAAGIDPTRRAETIPVSGFVAMARELTNSRN 282


>gi|159043734|ref|YP_001532528.1| dimethyladenosine transferase [Dinoroseobacter shibae DFL 12]
 gi|189028806|sp|A8LI73|RSMA_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157911494|gb|ABV92927.1| dimethyladenosine transferase [Dinoroseobacter shibae DFL 12]
          Length = 280

 Score =  261 bits (667), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 126/268 (47%), Positives = 171/268 (63%), Gaps = 5/268 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ +K+  KK +GQNFLLDLN+  +IA   G L G  V+E+G GPG LT+ LL  G
Sbjct: 10  LREVIAAHKLSAKKSLGQNFLLDLNLTARIARVPGDLSGADVLEVGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           ARKV+ IEKD +  P L+ I++ +P RLE+I+ DAL+VD   +  +S PI I ANLPYN+
Sbjct: 70  ARKVLAIEKDARCLPALQQIAAAYPGRLEVIEGDALEVDATAY--LSPPIHIAANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW +LTL+FQ+EV ERI A+  S  YGRL++L  WR +A +   
Sbjct: 128 GTELLVRWLTPPDWPPFWRTLTLMFQREVAERIVAKPGSKAYGRLAILAQWRAEAEIALT 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GG 246
           + P  F P+PKV S V+H      P  P     L ++   AF +RRK LR SLK L  G 
Sbjct: 188 LPPQAFIPAPKVHSAVVHLRARTEPRYPADAAVLSRVVATAFNQRRKMLRASLKGLTPGI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274
           E+ L   GI+   RAE LS+E+FC +  
Sbjct: 248 EDHLAAVGIDPTRRAETLSLEEFCALAR 275


>gi|163735800|ref|ZP_02143229.1| dimethyladenosine transferase [Roseobacter litoralis Och 149]
 gi|161390886|gb|EDQ15226.1| dimethyladenosine transferase [Roseobacter litoralis Och 149]
          Length = 280

 Score =  261 bits (667), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 124/280 (44%), Positives = 177/280 (63%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT  +    L++++  + +  +K MGQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MTTIDNLPPLRSVIRDHDLSARKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L +I++ +P RLE++  DAL++D      ++ PIR
Sbjct: 61  LTRGLLAQGARRVLAIEKDARCLPALAEIAAAYPGRLEVVNGDALEID--PLSALTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++ +TWPP+W+SLTL+FQ+EV ERI A+  S  YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPETWPPYWQSLTLMFQREVAERIVAKPGSKAYGRLAILAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV+S+V+H      P  P     L K+   AF +RRK LR 
Sbjct: 179 RADAQIVMQLPPEAFTPPPKVSSSVVHITALPAPRYPADANVLSKVVAMAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK LG   E+ L  AGI+   RAE +S++ FC +   + 
Sbjct: 239 ALKGLGPDIEDRLQAAGIKPTERAERVSLQGFCALARAVA 278


>gi|115525299|ref|YP_782210.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53]
 gi|122295624|sp|Q07LF4|RSMA_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115519246|gb|ABJ07230.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53]
          Length = 287

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 124/275 (45%), Positives = 175/275 (63%), Gaps = 3/275 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+  +IA ++G L+  TVIE+G GPG LT+ LL LG
Sbjct: 10  LREVIQRHDLSARKSLGQNFLLDLNLTTRIARAAGPLEDSTVIEVGPGPGGLTRALLALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++VI IE+D++    L +IS+ +P RL+I+  DA+  D        +  +I+ANLPYNI
Sbjct: 70  AKRVIAIERDERALGALAEISAHYPGRLDIVCADAMTYDPRPLLG-GARAKIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+  D WPP+++ L L+FQ+EV ERI A ++   YGRL VL  WR +  M+FD
Sbjct: 129 ATPLLIGWLETDPWPPWYDCLVLMFQREVAERIVATEDDEAYGRLGVLANWRAQTKMLFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247
           ISP  F P PKVTS+V+  IP   P PC    L+++T  AFG+RRK LRQSLK LG +  
Sbjct: 189 ISPAAFVPPPKVTSSVVRLIPRDEPEPCNRRMLEQVTAAAFGQRRKMLRQSLKSLGVDPA 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            L   AG+E   RAE + +  F  +   L + + I
Sbjct: 249 RLAAAAGVEPTRRAETIPVAGFVAMARELANIRGI 283


>gi|86749595|ref|YP_486091.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2]
 gi|119365054|sp|Q2IX80|RSMA_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|86572623|gb|ABD07180.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2]
          Length = 287

 Score =  258 bits (660), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/274 (44%), Positives = 180/274 (65%), Gaps = 3/274 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+  +IA ++G LD +TV+EIG GPG LT+ LL  G
Sbjct: 10  LRDVIKRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALLATG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+VI IE+D++    L++I++ +P RLEI+  DA++ D        +  RI+ANLPYNI
Sbjct: 70  ARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMEFDPRPLLG-GARARIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+ A+ WPP+++ + L+FQ+EV +RI A ++   YGRL+VL+ WR    M+FD
Sbjct: 129 ATPLLIGWLCAEPWPPWYDMMVLMFQREVAQRIVACEDDDAYGRLAVLSNWRCDTGMLFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247
           I+P  F P PKVTS+V+  +P   P PC   +L+++   AFG+RRK LRQSLK LG +  
Sbjct: 189 IAPSAFVPQPKVTSSVVRLVPRSAPEPCNRAALEQVAAAAFGQRRKMLRQSLKALGVDPA 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            L   AGI+   RAE + +  F  + N L D +D
Sbjct: 249 RLAAAAGIDPTRRAETVPVSGFVAMANELIDIRD 282


>gi|218509347|ref|ZP_03507225.1| dimethyladenosine transferase [Rhizobium etli Brasil 5]
          Length = 215

 Score =  258 bits (659), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 113/207 (54%), Positives = 151/207 (72%), Gaps = 1/207 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI +E+D +  P L +I   +P RLE+I+ DALK DFE       P++IIANLPYN+
Sbjct: 70  AKKVIAVERDARCLPALAEIGDHYPGRLEVIEGDALKTDFESLAP-EGPVKIIANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GWRT+A + FD
Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATEDDDHYGRLGVLCGWRTEARLAFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           + P  F P PKVTSTV+H  P  NPIP
Sbjct: 189 VPPQAFTPPPKVTSTVVHLTPRENPIP 215


>gi|92117868|ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
 gi|119365039|sp|Q1QKW0|RSMA_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91800762|gb|ABE63137.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
          Length = 287

 Score =  258 bits (658), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 3/271 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+  +IA ++G L+  TVIEIG GPG LT+ LL +G
Sbjct: 10  LRDVIKRHALSARKSLGQNFLLDLNLTARIARAAGPLEDATVIEIGPGPGGLTRALLAMG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++VI IE+D +    L++IS ++P RL I+  DA + D       +   +I+ANLPYNI
Sbjct: 70  AQRVIAIERDARALGALEEISGRYPGRLTIVNADATQFDSRPLLGTTR-AKIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL +W+S + WPP+++++ L+FQ+EV ERI A++N   YGRL+VL+ WR +  ++FD
Sbjct: 129 ATALLIDWLSVEPWPPWYDTMVLMFQREVAERIVARENEEAYGRLAVLSNWRAETKILFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247
           ISP  F P PK+TS+V+  +P   P  C    L+++   AFG+RRK LRQSLK L  +  
Sbjct: 189 ISPAAFVPQPKITSSVVRLVPRDKPETCERRLLEQVAAAAFGQRRKMLRQSLKSLPADPA 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L   AGIE   RAE + I  F  +   L D
Sbjct: 249 RLTAAAGIEPTQRAETVPISGFAAMARELAD 279


>gi|146277163|ref|YP_001167322.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025]
 gi|166221694|sp|A4WRK3|RSMA_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|145555404|gb|ABP70017.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025]
          Length = 278

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 128/268 (47%), Positives = 172/268 (64%), Gaps = 6/268 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFLLDLN+  KIA  +G L G  V+E+G GPG LT+ LL  G
Sbjct: 10  LREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLKGSDVLEVGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L ++++  P RLE++  DAL+VD      ++ PIRI+ANLPYN+
Sbjct: 70  ARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAA--RLTPPIRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+S+  WPPFWESLTL+FQKEV ERI A+  S  YGRL++L+ WRT+  ++  
Sbjct: 128 GTELLTRWLSSG-WPPFWESLTLMFQKEVAERIVARPGSKAYGRLALLSQWRTEPKIVLT 186

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P P + S V+HF     P  P     L ++T  AF +RRK LR SLK L    
Sbjct: 187 LPPEAFTPPPAIHSAVVHFTRLAGPRYPADAAVLSRVTAMAFNQRRKMLRSSLKGLAPDI 246

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274
           E +L  AGIE   RAE LS+E FC +  
Sbjct: 247 ETVLRDAGIEPTQRAEELSLEAFCALAR 274


>gi|260576766|ref|ZP_05844751.1| dimethyladenosine transferase [Rhodobacter sp. SW2]
 gi|259021018|gb|EEW24329.1| dimethyladenosine transferase [Rhodobacter sp. SW2]
          Length = 280

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/268 (45%), Positives = 174/268 (64%), Gaps = 5/268 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + ++ KK +GQNFLLDLN+  +IA ++G L G  V+E+G GPG LT+ LL  G
Sbjct: 10  LRAVIAAHDLVAKKQLGQNFLLDLNLTARIARAAGDLSGCDVLEVGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ +EKD +  P L +I++ +P RLE++Q DAL +D     ++  PI+I+ANLPYN+
Sbjct: 70  ARRVLAVEKDARCLPALAEIAAAYPGRLEVMQGDALALDVAA--HLVPPIKIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQKEV ERI A+     YGRL++L+ WR    ++  
Sbjct: 128 GTELLIRWLTPAHWPPFWDSLTLMFQKEVAERIVAKPGPKAYGRLALLSQWRADPKIVLT 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P+PKV S V+HF     P     E+ L ++T  AF +RRK LR SLK L    
Sbjct: 188 LPPEAFTPAPKVHSAVVHFRRLDAPRFAADEAVLGRVTAMAFNQRRKMLRSSLKALAPDI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274
           E  L  AGIE   RAE +S+E FC +  
Sbjct: 248 EVRLRAAGIEPTARAEEISLEGFCALAR 275


>gi|84684875|ref|ZP_01012775.1| dimethyladenosine transferase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667210|gb|EAQ13680.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2654]
          Length = 280

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/270 (45%), Positives = 173/270 (64%), Gaps = 5/270 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + ++ KK +GQNFLLDLN+  KIA  +G L    V+E+G GPG LT+ LL  G
Sbjct: 10  LREVIATHGLVAKKSLGQNFLLDLNLTAKIARQAGDLSACDVLEVGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ +EKD +    L +IS  +P RLE++  DAL++D     +++ PIRI+ANLPYN+
Sbjct: 70  ARRVLAVEKDARAMSALAEISEAYPGRLEVLNADALEID--PLAHLTPPIRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++  TWPP W SLTL+FQKEV ERI A+  S  YGRL++L+ WRT A ++ +
Sbjct: 128 GTELLTRWLTPPTWPPAWSSLTLMFQKEVAERIVAKPKSKAYGRLAILSQWRTDARIVME 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GG 246
           + P  F P PK+ S V+H      P  P    +L+++T  AF +RRK LR SLK L  G 
Sbjct: 188 LPPEAFTPPPKIRSAVVHLTALPEPRYPANAATLQRVTATAFQQRRKMLRASLKGLAPGI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E LL    I+   RAE + +E FC +   L
Sbjct: 248 EALLESVDIKPTARAEEIDLEHFCALARAL 277


>gi|84500985|ref|ZP_00999220.1| dimethyladenosine transferase [Oceanicola batsensis HTCC2597]
 gi|84391052|gb|EAQ03470.1| dimethyladenosine transferase [Oceanicola batsensis HTCC2597]
          Length = 279

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/271 (44%), Positives = 172/271 (63%), Gaps = 5/271 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  +K +GQNFLLDLN+  KIA  +G L G  V+EIG GPG LT+ LL  G
Sbjct: 10  LREVIATHGLAARKSLGQNFLLDLNLTAKIARQAGDLSGCDVLEIGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L +I++ +P RLE++  DAL+VD      ++ PIRI+ANLPYN+
Sbjct: 70  ARRVLAIEKDARCLPALAEIAAAYPRRLEVVNGDALEVD--PLTRLTPPIRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++ D WPP+W+SLTL+FQ+EV ERI A+     YGRL++L  WR +A +   
Sbjct: 128 GTELLVRWLTPDRWPPYWDSLTLMFQREVAERIVARPGGKAYGRLALLASWRAEARITLS 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S V+H      P  P     L+++   AF +RRK LR +LK L    
Sbjct: 188 LPPEAFTPPPKVSSAVVHLTALPEPRYPADPRVLERVVAMAFNQRRKMLRAALKGLAPDI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           E+ L  A I    RAE +S+E FC +   ++
Sbjct: 248 EDRLRAASIAPTDRAETVSLEQFCALARAVS 278


>gi|217978375|ref|YP_002362522.1| dimethyladenosine transferase [Methylocella silvestris BL2]
 gi|217503751|gb|ACK51160.1| dimethyladenosine transferase [Methylocella silvestris BL2]
          Length = 288

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 125/275 (45%), Positives = 171/275 (62%), Gaps = 4/275 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ I++ + +  KK +GQNFL DLN+  +IA ++G  D   ++E+G GPG LT+ LLT G
Sbjct: 11  LREIVAAFGLDAKKSLGQNFLFDLNLTGRIARAAGPQDAALILEVGPGPGGLTRALLTEG 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           ARKVI IE+D++  P L+ I+  +P RLEII  DAL  D       + P RI ANLPYN+
Sbjct: 71  ARKVIAIERDERCLPALRQIADHYPGRLEIIAGDALGADVAALAGDARPARICANLPYNV 130

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKATMMF 188
            T LL  WI ++ WPP+++ L L+FQ+EV ERI A       YGRL+VL  WR +  ++F
Sbjct: 131 ATALLTRWIESEPWPPWFDRLILMFQREVAERIVATPAQRAAYGRLAVLCNWRCETRILF 190

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245
           D+SP  F P PKVTS+V+   P   P+ C    L  +TQ AFG+RRK LRQSLK LG   
Sbjct: 191 DVSPSAFTPPPKVTSSVVELRPRAAPLACEARLLSLVTQAAFGQRRKMLRQSLKSLGADD 250

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
              +L  AG++   RAE + IE F  +   L + +
Sbjct: 251 AAAILAAAGVDPTARAEEIDIEGFAALARALGERR 285


>gi|126739404|ref|ZP_01755097.1| dimethyladenosine transferase [Roseobacter sp. SK209-2-6]
 gi|126719504|gb|EBA16213.1| dimethyladenosine transferase [Roseobacter sp. SK209-2-6]
          Length = 291

 Score =  254 bits (650), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 123/270 (45%), Positives = 172/270 (63%), Gaps = 5/270 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  +++  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG LT+ LL  G
Sbjct: 20  LREVIETHQLSARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGGLTRGLLAEG 79

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ +EKD +  P L +IS+ +P +LE+I  DAL+VD     +++ P+RI ANLPYN+
Sbjct: 80  ARRVLAVEKDARCMPALAEISTAYPGQLEVINGDALEVD--ALAHLTPPVRIAANLPYNV 137

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  S  YGRL++L  WR  A ++  
Sbjct: 138 GTELLVRWLTPKEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLALLAQWRADARIVLA 197

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV S V+H      P  P    +L ++   AF +RRK LR SLK +    
Sbjct: 198 LPPEAFSPPPKVHSAVVHLTALAEPRYPADAATLSRVIAAAFNQRRKMLRASLKSVAPNI 257

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E+ L  AGI+   RAE +S+E+FC +   L
Sbjct: 258 EDHLIAAGIKPTERAEQVSLEEFCALARSL 287


>gi|182677647|ref|YP_001831793.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633530|gb|ACB94304.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 297

 Score =  254 bits (650), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 122/264 (46%), Positives = 163/264 (61%), Gaps = 4/264 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ Y +  KK +GQNFL DLN+  +IA ++       ++EIG GPG LT+ LL  G
Sbjct: 16  LREVVATYGLAAKKALGQNFLFDLNLTGRIARAADPSKTALIVEIGPGPGGLTRALLAEG 75

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A KVI IE+D++  P L +I++ +P RLE++  DAL  D         P RI ANLPYNI
Sbjct: 76  APKVIAIEQDERCLPALAEIAAHYPGRLEVVAGDALTTDLGLLVASYRPARICANLPYNI 135

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKATMMF 188
           GT LL  WI  + WPP+++ L L+FQ+EV ERI A       YGRL+VL  WR +  ++F
Sbjct: 136 GTALLTRWIETEPWPPWFDRLVLMFQREVAERIVATPAQRADYGRLAVLCNWRCETRILF 195

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL---G 245
           D+SP  F P PKVTS V+  +P   P+ C  E L  +TQ AFG+RRK LRQSLK L   G
Sbjct: 196 DVSPSAFTPPPKVTSAVVELVPRAEPLTCDREKLSAVTQAAFGQRRKMLRQSLKSLLGGG 255

Query: 246 GENLLHQAGIETNLRAENLSIEDF 269
              L+  AG+   LRAE + I  F
Sbjct: 256 TSALIEAAGLAPTLRAEEVDIAGF 279


>gi|296447968|ref|ZP_06889875.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b]
 gi|296254535|gb|EFH01655.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b]
          Length = 287

 Score =  254 bits (649), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 123/278 (44%), Positives = 173/278 (62%), Gaps = 9/278 (3%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + ++  K +GQNFL DLN+  +IA ++G L+G T++EIG GPG LT+ LL  G
Sbjct: 8   LREVVAKHGLMASKALGQNFLFDLNLTARIARAAGPLEGATIVEIGPGPGGLTRALLAEG 67

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLP 126
           A +VI +E+D +  P L++I +++P RL I++ DAL  D  +      +  P RI ANLP
Sbjct: 68  AGRVIAVERDARCMPALREIEARYPGRLVIVEGDALAADPAQLVREHGLGGPARICANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKAT 185
           YNI T LL  WI A+ WP  ++   L+FQ+EV  RI A       YGRL+VL GWRT+A 
Sbjct: 128 YNIATELLARWIEAEPWPSVFDRYVLMFQREVALRIVATPAQRADYGRLAVLCGWRTRAR 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-- 243
           ++FD+SP  F P PKVTS+V+  +P+  P  C    L ++T+ AFG+RRK LRQSLK   
Sbjct: 188 ILFDLSPSAFTPPPKVTSSVVELVPNATPAACEPRLLSQVTKAAFGQRRKMLRQSLKSLP 247

Query: 244 ---LGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              L   +LL  AGIE   RAE + I  F  +   L D
Sbjct: 248 FPGLDVGSLLTAAGIEETRRAEEIDIGGFVALAQALAD 285


>gi|84516318|ref|ZP_01003678.1| dimethyladenosine transferase [Loktanella vestfoldensis SKA53]
 gi|84510014|gb|EAQ06471.1| dimethyladenosine transferase [Loktanella vestfoldensis SKA53]
          Length = 281

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/270 (44%), Positives = 171/270 (63%), Gaps = 5/270 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ Y + PKK +GQNFLLDLN+  +IA  +G L G  V+EIG GPG LT+ LL  G
Sbjct: 10  LREVIARYDLAPKKSLGQNFLLDLNLTARIARLAGDLAGADVLEIGPGPGGLTRGLLASG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L +I+++ P RL++I+ DAL +D  ++    +PI++ ANLPYN+
Sbjct: 70  ARRVLAIEKDPRCLPALAEIAARFPGRLQVIEGDALAIDPLEYLQ--APIKVAANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ     YGRL++L  WR  A ++ +
Sbjct: 128 GTELLVRWLTPQVWPPFWDSLTLMFQREVAERIVAQPGGKAYGRLALLAQWRADAKIVMN 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P VF P PKV S V+H      P  P     L  +   AF +RRK LR +LK +    
Sbjct: 188 LPPEVFSPPPKVHSAVVHLTALPAPRYPADPAVLNMVVAAAFNQRRKMLRSALKSVSPAI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E+ L + GI+   RAE + +E FC +   L
Sbjct: 248 EDHLQEVGIKPTERAEQVGLEAFCALARSL 277


>gi|75675874|ref|YP_318295.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255]
 gi|119365042|sp|Q3SRZ8|RSMA_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|74420744|gb|ABA04943.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255]
          Length = 287

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/279 (44%), Positives = 176/279 (63%), Gaps = 3/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+M +    L+ ++  + +  +K +GQNFLLDLN+  +IA ++G L   TV+EIG GPG 
Sbjct: 1   MSMIDDLPPLRDVIKRHALSARKSLGQNFLLDLNLTSRIARAAGPLQDATVVEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL +GA+ VI IE+D++    L++IS ++P RL II  DA   D       +   +
Sbjct: 61  LTRALLAVGAKHVIAIERDERALGALEEISDRYPGRLTIINADATDFDPRPLLGTTR-AK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+S + WPP+++ + L+FQ+EV ERI A++N   YGRL VL+ W
Sbjct: 120 IVANLPYNIATALLIRWLSIEPWPPWYDVMVLMFQREVAERIVARENEDAYGRLGVLSNW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  ++FDISP  F P P+VTS+V+  IP  NP PC   SL+++   AFG RRK LRQS
Sbjct: 180 RAETKILFDISPAAFVPQPQVTSSVVRLIPRYNPEPCDRRSLEQVAAAAFGHRRKMLRQS 239

Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LK L     +L   AGI+   RAE +SI  F  +   L 
Sbjct: 240 LKSLPADPASLAAAAGIDPTRRAETVSISGFAAMARELA 278


>gi|254465027|ref|ZP_05078438.1| dimethyladenosine transferase [Rhodobacterales bacterium Y4I]
 gi|206685935|gb|EDZ46417.1| dimethyladenosine transferase [Rhodobacterales bacterium Y4I]
          Length = 280

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/280 (44%), Positives = 173/280 (61%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L G  V+EIG GPG 
Sbjct: 1   MSAIDSLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L++I+  +P R E+I  DAL++D     +++ PIR
Sbjct: 61  LTRGLLAEGARRVLAIEKDTRCLPALQEIADAYPGRFEVINGDALEID--PLEHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPPFWESLTL+FQ+EV ERI AQ  S  YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPKEWPPFWESLTLMFQREVAERIVAQPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV+S V+H      P  P     L ++   AF +RRK LR 
Sbjct: 179 RADARIVLSLPPGAFTPPPKVSSAVVHLDALPEPRFPADAAILSRVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +    E  L  AGI    RAE +S+E FC +   L 
Sbjct: 239 SLKGISPDIEAHLTAAGIPPTERAEQVSLEAFCALARELA 278


>gi|114768929|ref|ZP_01446555.1| dimethyladenosine transferase [alpha proteobacterium HTCC2255]
 gi|114549846|gb|EAU52727.1| dimethyladenosine transferase [alpha proteobacterium HTCC2255]
          Length = 280

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/270 (47%), Positives = 171/270 (63%), Gaps = 5/270 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ I++ Y++  KK +GQNFLLDLN+  KIA  +G L   TV+EIG GPG LT+ LL  G
Sbjct: 12  LREIINEYQLSAKKSLGQNFLLDLNLTNKIARMAGDLTNHTVLEIGPGPGGLTRALLNSG 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KV+ IE+D++  P L  I     NRLE+   DAL  + E + N   P++++ANLPYNI
Sbjct: 72  AKKVLAIERDERLIPALNQIKEHFDNRLEVKYTDALNENIEAYLN--GPVKVVANLPYNI 129

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPP+WESLTL+FQKEV +RI A   S  YGRL++L  WR  A ++ +
Sbjct: 130 GTELLVRWLTPSEWPPYWESLTLMFQKEVAKRIVATPGSKAYGRLALLVQWRCNAKIVME 189

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           ISP  F P PKVTS V+H     NP      + L+KI   AF +RRK LR SLK      
Sbjct: 190 ISPQAFTPPPKVTSAVVHIERLTNPRFEADGKVLEKIVAAAFNQRRKMLRVSLKAFSPII 249

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E++L   GI+   RAE +S+E FC +  +L
Sbjct: 250 EDILIDVGIKPTQRAEEISLEQFCALARVL 279


>gi|254477153|ref|ZP_05090539.1| dimethyladenosine transferase [Ruegeria sp. R11]
 gi|214031396|gb|EEB72231.1| dimethyladenosine transferase [Ruegeria sp. R11]
          Length = 282

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/277 (44%), Positives = 175/277 (63%), Gaps = 5/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  ++++ +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MSAIDSLPPLREVIETHQLLARKSLGQNFLLDLNLTAKIARQAGDLTDCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GARKV+ +EKD +  P L ++++ +P +LE+I+ DAL+V+     +++ PIR
Sbjct: 61  LTRGLLAEGARKVLAVEKDSRCIPALAEVAAAYPGKLEVIEGDALEVN--PLTHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  +  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAQPGTKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV S V+H      P  P    +L K+   AF +RRK LR 
Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLTALEEPRFPADPGTLNKVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274
           SLK +    E+ L+ AGI    RAE +S+E FC +  
Sbjct: 239 SLKSVSPDIEDHLNAAGIPPTERAEQVSLEAFCALAR 275


>gi|110680311|ref|YP_683318.1| dimethyladenosine transferase [Roseobacter denitrificans OCh 114]
 gi|118600895|sp|Q164G1|RSMA_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|109456427|gb|ABG32632.1| dimethyladenosine transferase, putative [Roseobacter denitrificans
           OCh 114]
          Length = 280

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 122/271 (45%), Positives = 171/271 (63%), Gaps = 5/271 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L++++  + +  +K MGQNFLLDLN+  KIA  +G L    V+EIG GPG LT+ LL  G
Sbjct: 10  LRSVIRDHDLSARKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGGLTRGLLAQG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L +I++ +P RLE++  DAL++D      ++ PIR+ ANLPYN+
Sbjct: 70  ARRVLAIEKDARCLPALAEIAAVYPGRLEVMNGDALEID--PLSALTPPIRVAANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPP+W+SLTL+FQ+EV ERI A+  S  YGRL++L  WR  A ++  
Sbjct: 128 GTELLVRWLTPQIWPPYWQSLTLMFQREVAERIVARPGSKAYGRLAILAQWRADARIVMQ 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S+V+       P  P     L K+   AF +RRK LR +LK LG   
Sbjct: 188 LPPDAFTPPPKVSSSVVQITALPAPRYPADPYVLSKVVAMAFNQRRKMLRAALKGLGPDI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           E+ L  AGIE   RAE +S+E FC +   + 
Sbjct: 248 EDRLLAAGIEPTERAERVSLEGFCALARAVA 278


>gi|91977439|ref|YP_570098.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5]
 gi|123735336|sp|Q135P2|RSMA_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91683895|gb|ABE40197.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5]
          Length = 287

 Score =  252 bits (643), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 119/271 (43%), Positives = 177/271 (65%), Gaps = 3/271 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+  +IA ++G LD +TV+EIG GPG LT+ LL  G
Sbjct: 10  LRDVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALLATG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+VI IE+D++    L++I++ +P RLEI+  DA+  D           +I+ANLPYNI
Sbjct: 70  ARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMDFDPTPLLG-GERAKIVANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+  + WPP+++ + L+FQ+EV +RI A+++   YGRL+VL+ WR +  M+FD
Sbjct: 129 ATPLLIGWLCTEPWPPWYDMMVLMFQREVAQRIVAREDDDAYGRLAVLSNWRCETNMLFD 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247
           I+P  F P PKVTS+V+   P   P PC   +L+++   AFG+RRK LRQSLK LG +  
Sbjct: 189 IAPSAFVPQPKVTSSVVRLAPRAAPEPCNRAALEQVAAAAFGQRRKMLRQSLKSLGVDPA 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L   AGI+   RAE +++  F  + N L +
Sbjct: 249 RLAAAAGIDPTRRAETVAVSGFVAMANELNN 279


>gi|300023222|ref|YP_003755833.1| dimethyladenosine transferase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525043|gb|ADJ23512.1| dimethyladenosine transferase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 290

 Score =  251 bits (642), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/283 (43%), Positives = 178/283 (62%), Gaps = 3/283 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT  +    L+ ++  + +  KK +GQNFLLDLN+ +KIA ++G +   TV+EIG GPG 
Sbjct: 4   MTTADGLPPLRDVIERHGLAAKKSLGQNFLLDLNLTRKIARAAGDISKSTVVEIGPGPGG 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA+ VI IE+D +    L +I +++P RL +   DALK D+ +    + P+ 
Sbjct: 64  LTRALLIEGAKNVIAIERDDRCLAALDEIVARYPGRLRVHAGDALKTDWTELIAGAHPVT 123

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYNI + LL +W+  + WPP+++ + L+FQ+EV ERI A   +  YGRLSVL  +
Sbjct: 124 IAANLPYNIASVLLVDWLETEPWPPWFDRMVLMFQREVAERIIAAPRTKAYGRLSVLAQY 183

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239
           RT+A +  ++ P  F P PKV+S V+ F P   P P C + +L ++T  AFG+RRK LR 
Sbjct: 184 RTEARIAINLPPEAFTPPPKVSSAVVDFRPIAEPEPRCRVSTLARVTAAAFGQRRKMLRS 243

Query: 240 SLKRLG--GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           SLK+L    E LL + GI    RAE+LS+E+F R+  I    +
Sbjct: 244 SLKQLTPMAELLLREGGIAPERRAEDLSVEEFARLAAIFDRGE 286


>gi|86138688|ref|ZP_01057261.1| dimethyladenosine transferase [Roseobacter sp. MED193]
 gi|85824748|gb|EAQ44950.1| dimethyladenosine transferase [Roseobacter sp. MED193]
          Length = 281

 Score =  251 bits (641), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 120/277 (43%), Positives = 172/277 (62%), Gaps = 5/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  ++++ +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MSAIDSLPPLREVIDTHQLLARKSLGQNFLLDLNLTSKIARQAGDLSECDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ +EKD +  P L +I+  +P RL++I  DAL +D     +++ P+R
Sbjct: 61  LTRGLLAEGARRVLAVEKDSRCMPALAEIAEAYPGRLQLINGDALDID--PLEHLTPPVR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  +  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAQPGTKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV S V+H      P  P    +L ++    F +RRK LR 
Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLTALQEPRFPADAATLSRVIAAGFNQRRKMLRA 238

Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITN 274
           SLK +  G E+ L  AGI    RAE +S+E+FC +  
Sbjct: 239 SLKSVTPGIEDHLKAAGIAPTERAEQVSLEEFCALAR 275


>gi|221639320|ref|YP_002525582.1| dimethyladenosine transferase [Rhodobacter sphaeroides KD131]
 gi|254807881|sp|B9KST5|RSMA_RHOSK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|221160101|gb|ACM01081.1| Dimethyladenosine transferase [Rhodobacter sphaeroides KD131]
          Length = 278

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/271 (46%), Positives = 173/271 (63%), Gaps = 6/271 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFLLDLN+  KIA  +G L    V+E+G GPG LT+ LL  G
Sbjct: 10  LREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L ++++  P RLE++  DAL+VD      ++ PIRI+ANLPYN+
Sbjct: 70  ARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDLAA--RLTPPIRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+S+D WPPFWESLTL+FQKEV ERI A+  S  YGRL++L+ WRT   ++  
Sbjct: 128 GTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQWRTDPKIVLT 186

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P P + S V+HF     P  P   + L ++T  AF +RRK LR SLK L    
Sbjct: 187 LPPEAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRSSLKGLVPDI 246

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           E +L +AGIE   RAE + +E FC +   L 
Sbjct: 247 ETVLREAGIEPTQRAEEIPLEGFCALARRLA 277


>gi|89054300|ref|YP_509751.1| dimethyladenosine transferase [Jannaschia sp. CCS1]
 gi|88863849|gb|ABD54726.1| dimethyladenosine transferase [Jannaschia sp. CCS1]
          Length = 305

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/272 (43%), Positives = 175/272 (64%), Gaps = 5/272 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  +K +GQNFLLDLN+  KIA  +G L  + V+E+G GPG LT+ LL  G
Sbjct: 26  LRDVIAAHGLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGGLTRGLLAEG 85

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ +EKD +  P+L +I + +P RL+++  DAL++D+    ++ +P +I+ANLPYN+
Sbjct: 86  ARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALELDWAA--DLQAPRKIVANLPYNV 143

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++  +WPP WESLTL+FQ+EV ERI AQ  S  YGRL++L+ WR    ++  
Sbjct: 144 GTELLVRWLTPASWPPPWESLTLMFQREVAERIVAQPGSKTYGRLAILSQWRADPRIVMG 203

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV S V+HF     P  P     L ++   AFG+RRK LR +LK L    
Sbjct: 204 LPPEAFTPPPKVHSAVVHFTALPAPRFPADARVLTRVVAAAFGQRRKMLRAALKGLAPDI 263

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           E+ L  AG++   RAE + +E FC +  ++ D
Sbjct: 264 EDRLVAAGLKPTDRAEQVPLEGFCALARVMED 295


>gi|332558339|ref|ZP_08412661.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Rhodobacter sphaeroides WS8N]
 gi|332276051|gb|EGJ21366.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Rhodobacter sphaeroides WS8N]
          Length = 278

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/271 (46%), Positives = 173/271 (63%), Gaps = 6/271 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFLLDLN+  KIA  +G L    V+E+G GPG LT+ LL  G
Sbjct: 10  LREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L ++++  P RLE++  DAL+VD      ++ PIRI+ANLPYN+
Sbjct: 70  ARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAA--RLTPPIRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+S+D WPPFWESLTL+FQKEV ERI A+  S  YGRL++L+ WRT   ++  
Sbjct: 128 GTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQWRTDPKIVLT 186

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P P + S V+HF     P  P   + L ++T  AF +RRK LR SLK L    
Sbjct: 187 LPPEAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRSSLKGLVPDI 246

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           E +L +AGIE   RAE + +E FC +   L 
Sbjct: 247 ETVLREAGIEPTQRAEEIPLEGFCALARRLA 277


>gi|118600872|sp|Q28RD6|RSMA_JANSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 289

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/272 (43%), Positives = 175/272 (64%), Gaps = 5/272 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  +K +GQNFLLDLN+  KIA  +G L  + V+E+G GPG LT+ LL  G
Sbjct: 10  LRDVIAAHGLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ +EKD +  P+L +I + +P RL+++  DAL++D+    ++ +P +I+ANLPYN+
Sbjct: 70  ARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALELDWAA--DLQAPRKIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++  +WPP WESLTL+FQ+EV ERI AQ  S  YGRL++L+ WR    ++  
Sbjct: 128 GTELLVRWLTPASWPPPWESLTLMFQREVAERIVAQPGSKTYGRLAILSQWRADPRIVMG 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV S V+HF     P  P     L ++   AFG+RRK LR +LK L    
Sbjct: 188 LPPEAFTPPPKVHSAVVHFTALPAPRFPADARVLTRVVAAAFGQRRKMLRAALKGLAPDI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           E+ L  AG++   RAE + +E FC +  ++ D
Sbjct: 248 EDRLVAAGLKPTDRAEQVPLEGFCALARVMED 279


>gi|254462138|ref|ZP_05075554.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2083]
 gi|206678727|gb|EDZ43214.1| dimethyladenosine transferase [Rhodobacteraceae bacterium HTCC2083]
          Length = 280

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/277 (42%), Positives = 177/277 (63%), Gaps = 5/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT  +    L+ ++  +++  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MTTIDPLPPLRDVIERHELSARKSLGQNFLLDLNLTAKIARQAGDLSQCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GARKV+ IEKD +  P L +I+  +PNRL +I+ DAL +D     +++ PIR
Sbjct: 61  LTRGLLSEGARKVLAIEKDARCLPALDEIAQAYPNRLHVIEGDALGLD--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + +NLPYN+GT LL  W++   WPP+W+SLTL+FQ+EV +RI A+  S  YGRL++L  W
Sbjct: 119 VASNLPYNVGTELLIRWLTPKQWPPYWQSLTLMFQREVAQRIVAEPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++ ++ P  F P PKV+S V+H      P  P   ++L+++   AF +RRK LR 
Sbjct: 179 RCDARIVINLPPEAFSPPPKVSSAVVHLTALSEPRFPADFKTLERLVATAFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274
           SLK +    E+ L  AG+++  RAE + +E FC +  
Sbjct: 239 SLKSVSPDIEDHLRAAGLKSTERAEQIPLEGFCALAR 275


>gi|77463462|ref|YP_352966.1| dimethyladenosine transferase [Rhodobacter sphaeroides 2.4.1]
 gi|119365057|sp|Q3J2B9|RSMA_RHOS4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|77387880|gb|ABA79065.1| dimethyladenosine transferase [Rhodobacter sphaeroides 2.4.1]
          Length = 278

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/271 (46%), Positives = 173/271 (63%), Gaps = 6/271 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  KK +GQNFLLDLN+  KIA  +G L    V+E+G GPG LT+ LL  G
Sbjct: 10  LREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L ++++  P RLE++  DAL+VD      ++ PIRI+ANLPYN+
Sbjct: 70  ARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAA--RLTPPIRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+S+D WPPFWESLTL+FQKEV ERI A+  S  YGRL++L+ WRT   ++  
Sbjct: 128 GTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQWRTDPKIVLT 186

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P P + S V+HF     P  P   + L ++T  AF +RRK LR SLK L    
Sbjct: 187 LPPDAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRSSLKGLVPDI 246

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           E +L +AGIE   RAE + +E FC +   L 
Sbjct: 247 ETVLREAGIEPTQRAEEIPLEGFCALARRLA 277


>gi|254509515|ref|ZP_05121582.1| dimethyladenosine transferase [Rhodobacteraceae bacterium KLH11]
 gi|221533226|gb|EEE36214.1| dimethyladenosine transferase [Rhodobacteraceae bacterium KLH11]
          Length = 280

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/270 (44%), Positives = 172/270 (63%), Gaps = 5/270 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG LT+ LL+ G
Sbjct: 10  LREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTECDVLEIGPGPGGLTRGLLSEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           ARKV+ +EKD +    L DI++ +P RLE+I  DAL++D     +++ PIR+ ANLPYN+
Sbjct: 70  ARKVVALEKDTRCIAALNDIAAAYPGRLEVINGDALEID--PLAHLTPPIRVAANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  S  YGRL++L  WR  A +   
Sbjct: 128 GTELLVRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQWRADAHIAMS 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S V+H      P  P    +L ++   AF +RRK LR SL+ +    
Sbjct: 188 LPPGAFTPPPKVSSAVVHLSALPQPRYPADAATLSRVVAAAFNQRRKMLRASLRGIAPDI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E+ L  AGI+   RAE + +E FC +  ++
Sbjct: 248 EDRLIAAGIKPTDRAEQIPLESFCGLARMV 277


>gi|255262783|ref|ZP_05342125.1| dimethyladenosine transferase [Thalassiobium sp. R2A62]
 gi|255105118|gb|EET47792.1| dimethyladenosine transferase [Thalassiobium sp. R2A62]
          Length = 282

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/267 (44%), Positives = 166/267 (62%), Gaps = 5/267 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L  ++  + +  KK +GQNFLLDLN+  KIA  +G L    V+EIG GPG LT+ LL  G
Sbjct: 10  LSEVIQTHGLAAKKSLGQNFLLDLNLTAKIARQAGDLSDCDVLEIGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L +IS  +PNRL +I+ DAL  D +   +++ PIR+ ANLPYN+
Sbjct: 70  ARRVLAIEKDPRCLPALDEISQAYPNRLHVIEGDAL--DIDPLAHLTPPIRVSANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFWESLTL+FQ+EV +RI A+  S  YGRL++L  WR  A ++ +
Sbjct: 128 GTELLVRWLTPRDWPPFWESLTLMFQREVAQRIVAEPGSKAYGRLAILAQWRADARIVIN 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S V+H      P  P    +L +I    F +RRK LR SLK +    
Sbjct: 188 LPPEAFSPPPKVSSAVVHLTALAEPRYPADAATLNRIVAAGFNQRRKMLRASLKGVAPNI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRIT 273
           +  +  AG+    RAE +S+E FC + 
Sbjct: 248 QGYIEAAGLRPTDRAEQISLEGFCALA 274


>gi|126462317|ref|YP_001043431.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17029]
 gi|166221693|sp|A3PJZ3|RSMA_RHOS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|126103981|gb|ABN76659.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17029]
          Length = 278

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 126/271 (46%), Positives = 173/271 (63%), Gaps = 6/271 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  K+ +GQNFLLDLN+  KIA  +G L    V+E+G GPG LT+ LL  G
Sbjct: 10  LREVIRAHGLSAKRQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L ++++  P RLE++  DAL+VD      ++ PIRI+ANLPYN+
Sbjct: 70  ARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAA--RLTPPIRIVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+S+D WPPFWESLTL+FQKEV ERI A+  S  YGRL++L+ WRT   ++  
Sbjct: 128 GTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQWRTDPKIVLT 186

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P P + S V+HF     P  P   + L ++T  AF +RRK LR SLK L    
Sbjct: 187 LPPDAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRSSLKGLVPDI 246

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           E +L +AGIE   RAE + +E FC +   L 
Sbjct: 247 ETVLREAGIEPTQRAEEIPLEGFCALARRLA 277


>gi|323135841|ref|ZP_08070924.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242]
 gi|322398932|gb|EFY01451.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242]
          Length = 300

 Score =  248 bits (632), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 177/301 (58%), Gaps = 25/301 (8%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD--------------- 47
           M++    L+ +++ + +  KK +GQNFL DLN+  +IA ++G                  
Sbjct: 1   MSDALPPLRDVVARHGLDAKKTLGQNFLFDLNLTARIARAAGPFTHAAEKSSDFSDKSMH 60

Query: 48  ---GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                TV+EIG GPG LT+ LL  GAR VI +E+D +  P L +I++ +P RL +++ DA
Sbjct: 61  DETATTVVEIGPGPGGLTRALLAQGAR-VIAVERDARCLPALAEIAAHYPGRLTVVEGDA 119

Query: 105 LKVDFEKFF---NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
           L++D  +         P RI ANLPYN+ T LL  WI A+ WP  ++   L+FQKEV  R
Sbjct: 120 LEIDAAELVRAHGAGGPARICANLPYNVATALLTRWIEAEPWPSVFDRYVLMFQKEVALR 179

Query: 162 ITAQ-KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220
           I A       YGRL+VL GWRTKA ++FD+SP  F P PKVTS+V+  +P+ +P+ C   
Sbjct: 180 IVATPAQRADYGRLAVLCGWRTKARILFDVSPAAFTPPPKVTSSVVELVPNPSPLACDPR 239

Query: 221 SLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +L ++TQ AFG+RRK LRQSL+ LG     LL  AGIE   RAE + +  F  + N L  
Sbjct: 240 ALFRVTQAAFGQRRKMLRQSLRTLGVDASALLAAAGIEETKRAEEIDVPGFVALANALAS 299

Query: 279 N 279
           +
Sbjct: 300 H 300


>gi|83953609|ref|ZP_00962330.1| dimethyladenosine transferase [Sulfitobacter sp. NAS-14.1]
 gi|83841554|gb|EAP80723.1| dimethyladenosine transferase [Sulfitobacter sp. NAS-14.1]
          Length = 280

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/277 (42%), Positives = 175/277 (63%), Gaps = 5/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  +K +GQNFLLDLN+  KIA  +G +    V+EIG GPG 
Sbjct: 1   MSTIDNLPPLREVINTHDLKARKSLGQNFLLDLNLTAKIARQAGDMTECDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GAR+V+ IEKD++  P L +I+  +P+RL +I+ DAL++D     +++ PIR
Sbjct: 61  LTRGLLSEGARRVLAIEKDKRCLPALAEIAEAYPDRLTVIEGDALEID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI A+  S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPQEWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++ ++ P  F P PKV+S V+H      P  P   + L ++   AF +RRK LR 
Sbjct: 179 RADARIVLNLPPEAFTPPPKVSSAVVHLTALPEPRFPADPDVLNRVVAAAFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274
           +LK      E+ L  AG++   RAE + +E FC +  
Sbjct: 239 ALKGTAPDIEDRLRAAGLKPTERAEQVPLEGFCALAR 275


>gi|126725345|ref|ZP_01741187.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150]
 gi|126704549|gb|EBA03640.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150]
          Length = 280

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/273 (43%), Positives = 172/273 (63%), Gaps = 5/273 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L  ++  + +  +K +GQNFLLDLN+  KIA  +G L G  V+EIG GPG LT+ LL  G
Sbjct: 10  LSDVIETHGLAARKSLGQNFLLDLNLTSKIARQAGDLRGSDVLEIGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +    L +I+S +PN+L+ I  DAL+ +     ++ +PI+++ANLPYN+
Sbjct: 70  ARRVLAIEKDTRCIAALDEIASAYPNQLKTINGDALEAN--PLEHLQAPIKVVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQ+EV  RI A+     YGRL++L  WR +  ++ +
Sbjct: 128 GTELLIRWLTPAEWPPFWDSLTLMFQREVAHRIVAKPGDKAYGRLALLAQWRAEPRIVME 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247
           + P  F P+PKV+S V+H      P  P     L ++TQ AFG+RRK LR SLK +  + 
Sbjct: 188 LPPEAFTPAPKVSSAVVHLTALAEPRFPASGPHLSRVTQAAFGQRRKMLRASLKGIFKDP 247

Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             +L   GI+   RAE + +E FC +  +L  N
Sbjct: 248 TAVLESVGIDPTARAEVIGLEQFCALARVLKGN 280


>gi|56697309|ref|YP_167675.1| dimethyladenosine transferase [Ruegeria pomeroyi DSS-3]
 gi|62900467|sp|Q5LQN0|RSMA_SILPO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56679046|gb|AAV95712.1| dimethyladenosine transferase [Ruegeria pomeroyi DSS-3]
          Length = 279

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/271 (44%), Positives = 170/271 (62%), Gaps = 5/271 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG LT+ LL  G
Sbjct: 10  LREVIASHQLSARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L +I++ +  RLE+I  DAL++D     +++ PIRI ANLPYN+
Sbjct: 70  ARRVLAIEKDARCLPALAEIAAAYSGRLEVINGDALEID--PLAHMTPPIRIAANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQ+EV ERI A+  S  YGRL++L  WR +A ++  
Sbjct: 128 GTELLVRWLTPRDWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQWRAEARIVMS 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S V+H      P  P     L ++   AF +RRK LR +LK      
Sbjct: 188 LPPEAFTPPPKVSSAVVHLTALPEPRFPADAAILSRVVAAAFNQRRKMLRAALKGQAPDI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           E+ L  AGI+   RAE + +E FC +   L 
Sbjct: 248 EDRLLAAGIKPTERAEQVPLEAFCALARELA 278


>gi|163739709|ref|ZP_02147117.1| dimethyladenosine transferase [Phaeobacter gallaeciensis BS107]
 gi|163743158|ref|ZP_02150540.1| dimethyladenosine transferase [Phaeobacter gallaeciensis 2.10]
 gi|161383575|gb|EDQ07962.1| dimethyladenosine transferase [Phaeobacter gallaeciensis 2.10]
 gi|161386939|gb|EDQ11300.1| dimethyladenosine transferase [Phaeobacter gallaeciensis BS107]
          Length = 281

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/279 (43%), Positives = 172/279 (61%), Gaps = 5/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  ++++ +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MSAIDSLPPLREVIETHQLLARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ +EKD +  P L +IS  +P RL++I+ DAL+V+     +++ PIR
Sbjct: 61  LTRGLLAEGARRVLAVEKDSRCIPALAEISDAYPGRLQVIEGDALEVN--PLTHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI A   S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAVPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV S V+H      P  P    +L K+   AF +RRK LR 
Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLKALEAPRYPADAGTLNKVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           SLK +    E+ L+  GI    RAE + +E FC +   L
Sbjct: 239 SLKSVSPDIEDHLNAVGIPPTERAEQVGLEAFCALARSL 277


>gi|260433483|ref|ZP_05787454.1| dimethyladenosine transferase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417311|gb|EEX10570.1| dimethyladenosine transferase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 280

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/279 (44%), Positives = 176/279 (63%), Gaps = 5/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT  +    L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MTAIDTLPPLREVIARHQLSARKSLGQNFLLDLNLTAKIARQAGDLTQCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GARKV+ +EKD +    L++I++ +P RLEII  DAL++D     +++ PIR
Sbjct: 61  LTRGLLAEGARKVVAVEKDTRCIAALEEIAAAYPGRLEIINGDALEID--PLEHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  S  YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +A +   + P  F P PKV+S V+H      P  P    +L ++   AF +RRK LR 
Sbjct: 179 RAQAQIAMSLPPGAFTPPPKVSSAVVHLTALPEPRFPAEAGTLSRVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +LK L    E+ L  AGI+   RAE +S+E FC +   L
Sbjct: 239 ALKGLAPDIEDRLTAAGIKPTERAEQVSLEAFCALAREL 277


>gi|85716334|ref|ZP_01047307.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
 gi|85696850|gb|EAQ34735.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
          Length = 284

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/279 (43%), Positives = 177/279 (63%), Gaps = 3/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + +  +K +GQNFLLDLN+  KIA ++G L G TVIEIG GPG 
Sbjct: 1   MSVIDDLPPLRDVIKRHALSARKSLGQNFLLDLNLTAKIARAAGQLQGATVIEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA+ VI IE+D++    L++IS ++P+RL I+  DA   D +     +   +
Sbjct: 61  LTRALLAAGAKHVIAIERDERALGPLEEISDRYPDRLTIVNGDATNFDPQPLLGTTR-AK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+S + WPP+++++ L+FQ+EV ERI A++N   YGRL+VL+ W
Sbjct: 120 IVANLPYNIATALLIRWLSIEPWPPWYDAMVLMFQREVAERIVARENDEAYGRLAVLSNW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  ++F ISP  F P P+VTS+V+  IP  +P PC    L+++   AFG RRK LRQS
Sbjct: 180 RAETKILFHISPAAFVPQPQVTSSVVRLIPRESPEPCDRRLLEQVAAAAFGHRRKMLRQS 239

Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LK L     +L   AGI+   RAE + I  F  +   L 
Sbjct: 240 LKSLPADPASLAAAAGIDPARRAETVPISGFVAMARELA 278


>gi|83942389|ref|ZP_00954850.1| dimethyladenosine transferase [Sulfitobacter sp. EE-36]
 gi|83846482|gb|EAP84358.1| dimethyladenosine transferase [Sulfitobacter sp. EE-36]
          Length = 280

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 118/277 (42%), Positives = 175/277 (63%), Gaps = 5/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  +K +GQNFLLDLN+  KIA  +G +    V+EIG GPG 
Sbjct: 1   MSTIDNLPPLREVINTHDLKARKSLGQNFLLDLNLTAKIARQAGDMTECDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GAR+V+ IEKD++  P L +I+  +P+RL +I+ DAL++D     +++ PIR
Sbjct: 61  LTRGLLSEGARRVLAIEKDKRCLPALAEIAEAYPDRLTVIEGDALEID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI A+  S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPQEWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++ ++ P  F P PKV+S V+H      P  P   + L ++   AF +RRK LR 
Sbjct: 179 RADARIVLNLPPEAFTPPPKVSSAVVHLTALPQPRFPADPDVLNRVVAAAFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274
           +LK      E+ L  AG++   RAE + +E FC +  
Sbjct: 239 ALKGTAPDIEDRLLAAGLKPTERAEQVPLEGFCALAR 275


>gi|126728792|ref|ZP_01744607.1| dimethyladenosine transferase [Sagittula stellata E-37]
 gi|126710722|gb|EBA09773.1| dimethyladenosine transferase [Sagittula stellata E-37]
          Length = 279

 Score =  244 bits (624), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 121/277 (43%), Positives = 171/277 (61%), Gaps = 5/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ +++  KK +GQNFLLDLN+  +IA   G L  + V+E+G GPG 
Sbjct: 1   MSQIDNLPPLREVIATHQLSAKKALGQNFLLDLNLTARIARIPGDLSQMDVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GAR+V+ IEKD +  P L +I+  +P RLE+I+ DAL++D     ++  PI 
Sbjct: 61  LTRGLLSGGARRVLAIEKDARCLPALAEIADAYPGRLEVIEGDALQID--PLAHLEPPIA 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPP W SLTL+FQKEV ERI AQ     YGRL++L+ W
Sbjct: 119 ICANLPYNVGTELLTRWLTPPEWPPVWSSLTLMFQKEVAERIVAQPGGKAYGRLAILSQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           RT A +   + P  F P PKV+S V+H      P  P   ++L++I   AF +RRK LR 
Sbjct: 179 RTDARIALTLPPGAFTPPPKVSSAVVHLTALPAPRYPANPKTLERIVAMAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274
           +LK      E+ L   GI    RAE +S+E FC +  
Sbjct: 239 ALKGAAPDIEDRLRSVGIPPTERAEQVSLEAFCALAR 275


>gi|149914652|ref|ZP_01903182.1| dimethyladenosine transferase [Roseobacter sp. AzwK-3b]
 gi|149811445|gb|EDM71280.1| dimethyladenosine transferase [Roseobacter sp. AzwK-3b]
          Length = 279

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/270 (44%), Positives = 171/270 (63%), Gaps = 5/270 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  +K +GQNFLLDLN+  KIA ++G L G  V+EIG GPG LT+ LL  G
Sbjct: 10  LRDVIAQHGLSARKALGQNFLLDLNLTSKIARAAGDLTGSDVLEIGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V+ IEKD +  P L +I+  +P RL ++  DAL+VD     +++ PI+++ANLPYN+
Sbjct: 70  ARHVLAIEKDARCLPALDEIAQAYPGRLTVLNADALQVD--PLAHLTPPIKVVANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPP W+SLTL+FQ+EV ERI A   S  YGRL++L  WR +A ++  
Sbjct: 128 GTELLIRWLTPADWPPVWDSLTLMFQREVAERIVATPGSKAYGRLALLAQWRCEARIVMH 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S V+H      P  P     L+++  +AF +RRK LR +LK L    
Sbjct: 188 LPPSAFTPPPKVSSAVVHITALPEPRYPADPVLLERLVAKAFNQRRKMLRSALKGLAPDL 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E+ L  AGI+   RAE + +E FC +   L
Sbjct: 248 EDRLLAAGIQPTDRAETVGLEQFCALARSL 277


>gi|254488687|ref|ZP_05101892.1| dimethyladenosine transferase [Roseobacter sp. GAI101]
 gi|214045556|gb|EEB86194.1| dimethyladenosine transferase [Roseobacter sp. GAI101]
          Length = 280

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/277 (43%), Positives = 170/277 (61%), Gaps = 5/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  +K +GQNFLLDLN+  +IA  +G L    V+EIG GPG 
Sbjct: 1   MSTIDSLPPLRDVINTHDLKARKSLGQNFLLDLNLTARIARHAGDLTACDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GAR V+ IEKD +  P L +I+  +P RL +I+ DAL  D +   ++  PIR
Sbjct: 61  LTRALLSEGARHVLAIEKDARCLPALAEIADAYPGRLTVIEGDAL--DIDPLAHLKPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFWESLTL+FQ+EV ERI A+  S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPPDWPPFWESLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P+PKV+S V+H      P  P     L +I   AF +RRK LR 
Sbjct: 179 RADARIVMHLPPEAFTPAPKVSSAVVHLTALPEPRFPADPAILSRIVATAFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274
           +LK +    E+ L  AG++   RAE + +E FC +  
Sbjct: 239 ALKGVAPDIEDRLIAAGLKPTDRAEQIPLEGFCALAR 275


>gi|89070361|ref|ZP_01157668.1| dimethyladenosine transferase [Oceanicola granulosus HTCC2516]
 gi|89044008|gb|EAR50183.1| dimethyladenosine transferase [Oceanicola granulosus HTCC2516]
          Length = 281

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/274 (44%), Positives = 166/274 (60%), Gaps = 5/274 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  KK +GQNFLLDLN+  KIA ++G L    V+EIG GPG LT+ LL  G
Sbjct: 10  LREVIATHGLSAKKALGQNFLLDLNLTAKIARAAGDLTAADVLEIGPGPGGLTRGLLASG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V+ IEKD +  P L +I++ +P RL +++ DAL  D     +++ P RI ANLPYN+
Sbjct: 70  ARHVVAIEKDPRCLPALAEIAAAYPGRLTVLEGDALATD--ATVHLTPPYRIAANLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++  +WPP WESLTL+FQKEV +RI A+  S  YGRL++L  WR  A ++  
Sbjct: 128 GTELLVRWLTPPSWPPAWESLTLMFQKEVAQRIVARPGSKAYGRLALLAQWRADAQIVMS 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S V+       P  P    +L +IT  AF +RRK LR SLK L    
Sbjct: 188 LPPGAFTPPPKVSSAVVRLDALPQPRYPADAATLSRITATAFNQRRKMLRASLKGLAPDI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           E  L   GI    RAE + +E FC +   L   +
Sbjct: 248 ERHLEAVGIAPTDRAEQIDLERFCALARRLAPER 281


>gi|254452280|ref|ZP_05065717.1| dimethyladenosine transferase [Octadecabacter antarcticus 238]
 gi|198266686|gb|EDY90956.1| dimethyladenosine transferase [Octadecabacter antarcticus 238]
          Length = 279

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 122/271 (45%), Positives = 168/271 (61%), Gaps = 5/271 (1%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +LK ++  + +  +K +GQNFLLDLN+  KIA  SG  +   ++EIG GPG LT+ LL  
Sbjct: 8   TLKQVIDSHGLAARKSLGQNFLLDLNLTAKIARLSGRNEDHDILEIGPGPGGLTRGLLAE 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GAR ++ IEKD +  P L DI + +P+RL ++  DAL  D     +++ PIR+ ANLPYN
Sbjct: 68  GARHILAIEKDDRCLPALADIQAAYPDRLTVLCGDAL--DINPLDHLTPPIRVAANLPYN 125

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           IGT LL  W++   WPP+W+SLTL+FQ+EV +RITA   S  YGRL++L  WRT A ++ 
Sbjct: 126 IGTELLVRWLTPQDWPPYWDSLTLMFQREVAQRITAAPGSKAYGRLAILCQWRTDAQIVM 185

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
           ++ P  F P PKV+S V+H      P  P     L+ IT  AF +RRK LR SLK L   
Sbjct: 186 NLPPEAFSPPPKVSSAVVHLTALAEPRFPADANMLQHITATAFNQRRKMLRSSLKGLSPD 245

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            E+ L  A I+   RAE + +E FC +   L
Sbjct: 246 IEDHLIAANIKPTDRAEQIDVERFCALARSL 276


>gi|163746453|ref|ZP_02153811.1| dimethyladenosine transferase [Oceanibulbus indolifex HEL-45]
 gi|161380338|gb|EDQ04749.1| dimethyladenosine transferase [Oceanibulbus indolifex HEL-45]
          Length = 287

 Score =  242 bits (617), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 116/268 (43%), Positives = 169/268 (63%), Gaps = 5/268 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ +++  +K +GQNFLLDLN+  KIA  +G +    V+EIG GPG LT+ LL  G
Sbjct: 17  LREVINTHELAARKSLGQNFLLDLNLTAKIARQAGDMADCDVLEIGPGPGGLTRGLLAEG 76

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V+ IEKD++  P L +++  +P RL +I+ DAL++D     +++ PIR+ ANLPYN+
Sbjct: 77  ARHVLAIEKDRRCLPALAEVAEHYPGRLTVIEGDALEID--PLSHLTPPIRVAANLPYNV 134

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQ+EV ERI A   S  YGRL+VL  WR+ A ++  
Sbjct: 135 GTELLVRWLTPPQWPPFWQSLTLMFQREVAERIVATPGSKAYGRLAVLAQWRSDARIVMQ 194

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S+V+H      P  P     L ++   AF +RRK LR +LK      
Sbjct: 195 LPPGAFTPPPKVSSSVVHLTALPEPRYPADPAVLSRVVAMAFNQRRKMLRSALKGAAPDI 254

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274
           E+ L  AG++   RAE + +E FC +  
Sbjct: 255 EDRLIAAGLKPTDRAEQVPLEGFCALAR 282


>gi|254437873|ref|ZP_05051367.1| dimethyladenosine transferase [Octadecabacter antarcticus 307]
 gi|198253319|gb|EDY77633.1| dimethyladenosine transferase [Octadecabacter antarcticus 307]
          Length = 279

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 123/271 (45%), Positives = 169/271 (62%), Gaps = 5/271 (1%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +LK ++  + +  +K +GQNFLLDLN+  KIA  SG  +   V+EIG GPG LT+ LL+ 
Sbjct: 8   TLKQVIDSHGLAARKSLGQNFLLDLNLTAKIARLSGRNEDHDVLEIGPGPGGLTRGLLSE 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GAR V+ IEKD +  P L +I S +P+RL ++  DAL  D     +++ PIR+ ANLPYN
Sbjct: 68  GARHVLAIEKDDRCLPALAEIQSAYPDRLTVLCGDAL--DINPLDHLTPPIRVAANLPYN 125

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           IGT LL  W++   WPP+W+SLTL+FQ+EV +RITA   S  YGRL++L  WRT A ++ 
Sbjct: 126 IGTELLIRWLTPQDWPPYWDSLTLMFQREVAQRITAAPGSKAYGRLAILCQWRTDAQIVM 185

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
           ++ P  F P PKV+S V+H      P  P     L+ IT  AF +RRK LR SLK L   
Sbjct: 186 NLPPEAFSPPPKVSSAVVHLTALAKPRFPADANMLQHITATAFNQRRKMLRSSLKGLSPD 245

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            E+ L  A I+   RAE + ++ FC +   L
Sbjct: 246 IEDHLIAADIKPTDRAEQIDVQRFCALARSL 276


>gi|126736396|ref|ZP_01752138.1| dimethyladenosine transferase [Roseobacter sp. CCS2]
 gi|126714217|gb|EBA11086.1| dimethyladenosine transferase [Roseobacter sp. CCS2]
          Length = 278

 Score =  241 bits (616), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 122/273 (44%), Positives = 168/273 (61%), Gaps = 11/273 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  KK +GQNFLLDLN+  KIA  +G L G  V+EIG GPG LT+ LL  G
Sbjct: 8   LREVIATHDLAAKKSLGQNFLLDLNLTAKIARLAGDLSGADVLEIGPGPGGLTRGLLAEG 67

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+V+ IEKD +  P L DI++++P RL+ I  DAL V+     ++S PI+I ANLPYN+
Sbjct: 68  ARRVLAIEKDPRCMPALADIAARYPGRLQTINGDALTVN--PLEHLSQPIKIAANLPYNV 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+ LTL+FQ+EV +RI A   S  YGRL++L  WRT   ++ D
Sbjct: 126 GTELLVRWLTPPEWPPFWDCLTLMFQREVAQRIVATPGSKAYGRLALLAQWRTDPKIVMD 185

Query: 190 ISPHVFFPSPKVTSTVIHFI----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           + P  F P PKV S V+H      P     P    +L K+   AF +RRK LR +LK + 
Sbjct: 186 LPPEAFSPPPKVNSAVVHLTALPAPRFAADPG---TLNKVVAAAFNQRRKMLRSALKSVS 242

Query: 246 G--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              E+ L   GI+   RAE + +E FC +   L
Sbjct: 243 PDIEDHLIATGIKPTERAEQVGLEAFCALARQL 275


>gi|149201838|ref|ZP_01878812.1| dimethyladenosine transferase [Roseovarius sp. TM1035]
 gi|149144886|gb|EDM32915.1| dimethyladenosine transferase [Roseovarius sp. TM1035]
          Length = 283

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/268 (43%), Positives = 165/268 (61%), Gaps = 5/268 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L  +++ + +  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG LT+ LL  G
Sbjct: 10  LAKVIAAHGLSARKSLGQNFLLDLNLTSKIARQAGDLGDCDVLEIGPGPGGLTRGLLMEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V+ IEKD +  P L++I+   P RL ++  DAL  D +   +++ PIR+++NLPYN+
Sbjct: 70  ARHVLAIEKDSRCLPALQEIADAAPGRLTVLNADAL--DLDPLAHLTPPIRVVSNLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ     YGRL++L  WR    +M  
Sbjct: 128 GTELLIRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGGKAYGRLALLAQWRAVPRIMMH 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S V+H      P  P   + L+++   AF +RRK LR +LK      
Sbjct: 188 LPPGAFTPPPKVSSAVVHLTALPEPRYPADPKILERVVARAFNQRRKMLRAALKGAAPDI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274
           E+ L  AGI+   RAE +S+E FC +  
Sbjct: 248 EDRLLSAGIKPTDRAETVSLEQFCALAR 275


>gi|218458347|ref|ZP_03498438.1| dimethyladenosine transferase [Rhizobium etli Kim 5]
          Length = 202

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/194 (55%), Positives = 142/194 (73%), Gaps = 1/194 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G L+G TV E+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGGLEGTTVFEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI IE+D +  P L +I+  +P RLE+I+ DALK DFE       P++IIANLPYN+
Sbjct: 70  AKKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAP-EGPVKIIANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL+GWRT+A M FD
Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLSGWRTEARMAFD 188

Query: 190 ISPHVFFPSPKVTS 203
           + P    P PKVTS
Sbjct: 189 VPPRALTPPPKVTS 202


>gi|260752282|ref|YP_003225175.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551645|gb|ACV74591.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 278

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/266 (44%), Positives = 170/266 (63%), Gaps = 8/266 (3%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +   K +GQNFLLD  +L +IA   G L   TV E+G GPG LT+ LL  G
Sbjct: 9   LRAVIARHGLSADKRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALLKAG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A KV  +E+D++  P L ++S+  P++L++I  DA+++D      +   + I+ANLPYN+
Sbjct: 69  A-KVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAV--LGEHVHIVANLPYNV 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++A TW P+W SLTL+FQKEV ERITA+  +PHYGRLSVL  WR++A + F 
Sbjct: 126 GTALLIRWLTAKTWQPWWSSLTLMFQKEVAERITAKVGTPHYGRLSVLAQWRSEAKLSFP 185

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +    F P PKV S V+H  P   P    L +L+KIT  AF +RRK LRQSLK +  E++
Sbjct: 186 VHRSAFVPPPKVMSAVVHLTPKDQPEGVSLGTLEKITAAAFNQRRKMLRQSLKNI--EHM 243

Query: 250 LHQ---AGIETNLRAENLSIEDFCRI 272
           +     AGI+   R E +S+ +F  I
Sbjct: 244 MEALELAGIDATRRPETVSVAEFIAI 269


>gi|83312817|ref|YP_423081.1| dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
 gi|119365030|sp|Q2W0V3|RSMA_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|82947658|dbj|BAE52522.1| Dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
          Length = 281

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/270 (45%), Positives = 171/270 (63%), Gaps = 9/270 (3%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  +K +GQ+FL DLN+  +IA ++G L   +VIEIG GPG LT+ LL  G
Sbjct: 7   LREVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLTVGSVIEIGPGPGGLTRALLDAG 66

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR+VI IE+D +   I  +I+  +P RLEI+  DA+ VD  +   +  P RI+ANLPYNI
Sbjct: 67  ARQVIAIERDDRAIAIQNEIAEAYPGRLEIMAADAMTVDAAELGEV--PRRIVANLPYNI 124

Query: 130 GTRLLFNWI-SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
            T LL  W+  AD     +E L L+FQKEV +R+ A   S HYGRLSV+T WR +   +F
Sbjct: 125 STALLLGWLRRADA----FERLVLMFQKEVVDRLAAPPRSEHYGRLSVITQWRCEVRPLF 180

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
           ++    F P P VTSTV+  IP   P+ P   E+L+++T  AFG+RRK LR SLK LGG 
Sbjct: 181 NVDRRAFTPPPAVTSTVVDLIPRAEPLAPARFETLERVTAAAFGQRRKMLRSSLKSLGGA 240

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E+LL + GI    RAE + +E FC +   L
Sbjct: 241 EDLLERTGILPTARAEEIPVEGFCALARAL 270


>gi|163797528|ref|ZP_02191479.1| 16S rRNA dimethylase [alpha proteobacterium BAL199]
 gi|159177277|gb|EDP61836.1| 16S rRNA dimethylase [alpha proteobacterium BAL199]
          Length = 283

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 121/272 (44%), Positives = 169/272 (62%), Gaps = 6/272 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+  ++      KK +GQNFLLD+N+ ++IA ++G+L+  T IEIG GPG LT+ LL  G
Sbjct: 15  LREAIATANFSAKKSLGQNFLLDINLTRRIARAAGALETGTTIEIGPGPGGLTRALLIEG 74

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  +I IE+D +    L  +      RL +++DDA +VD       ++P R++ANLPYN+
Sbjct: 75  AVDLIAIERDSRAAEALAPLVQAAEGRLRLVEDDATEVDVSSLG--AAPRRVVANLPYNV 132

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            TRLL  W++    P  +ESLTL+FQKEV +R+ A   S  YGRLSV   W      + D
Sbjct: 133 ATRLLLGWLAT---PTSFESLTLMFQKEVADRLLAAPGSDAYGRLSVFVQWLCTVRRVTD 189

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           + P  F P PKV S+V+   P   P+ P    +L+++T+ AFG+RRK LRQSLK LGG+ 
Sbjct: 190 LPPSAFTPPPKVWSSVVRLEPRAEPLHPADRRTLERVTEAAFGQRRKMLRQSLKGLGGDA 249

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LL  AGIE   R E LSI +FCR+ N L+D +
Sbjct: 250 LLIAAGIEPTERPERLSIAEFCRLANALSDRE 281


>gi|56552210|ref|YP_163049.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761717|ref|ZP_04759804.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|62900473|sp|Q5NMX2|RSMA_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56543784|gb|AAV89938.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241374025|gb|EER63558.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 278

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 119/266 (44%), Positives = 170/266 (63%), Gaps = 8/266 (3%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +   K +GQNFLLD  +L +IA   G L   TV E+G GPG LT+ LL  G
Sbjct: 9   LRAVIARHGLSADKRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALLKAG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A KV  +E+D++  P L ++S+  P++L++I  DA+++D      +   + I+ANLPYN+
Sbjct: 69  A-KVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAV--LGEHVHIVANLPYNV 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++A TW P+W SLTL+FQKEV ERITA+  +PHYGRLSVL  WR++A + F 
Sbjct: 126 GTALLIRWLTAKTWQPWWSSLTLMFQKEVAERITAKVGTPHYGRLSVLAQWRSEAKLSFP 185

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +    F P PKV S V+H  P   P    L +L+KIT  AF +RRK LRQSLK +  E++
Sbjct: 186 VHRSAFVPPPKVMSAVVHLTPKDQPEGLSLGTLEKITAAAFNQRRKMLRQSLKNI--EHM 243

Query: 250 LHQ---AGIETNLRAENLSIEDFCRI 272
           +     AGI+   R E +S+ +F  I
Sbjct: 244 MEALELAGIDATRRPETVSVAEFIAI 269


>gi|85706337|ref|ZP_01037431.1| dimethyladenosine transferase [Roseovarius sp. 217]
 gi|85669110|gb|EAQ23977.1| dimethyladenosine transferase [Roseovarius sp. 217]
          Length = 283

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 116/275 (42%), Positives = 167/275 (60%), Gaps = 5/275 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L  +++ + +  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG LT+ LL  G
Sbjct: 10  LARVIAAHGLSARKSLGQNFLLDLNLTSKIARQAGDLTTCDVLEIGPGPGGLTRGLLMEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V+ IEKD +  P L +I+   P RL ++  DAL  D +   +++ PIR+++NLPYN+
Sbjct: 70  ARHVLAIEKDARCLPALHEIAEAAPGRLTVLNADAL--DLDPLAHLTPPIRVVSNLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   WPPFW+SLTL+FQ+EV ERI A   S  YGRL++L  WR    ++  
Sbjct: 128 GTELLIRWLTPPDWPPFWQSLTLMFQREVAERIVATPGSKAYGRLALLAQWRATPRIVMH 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           + P  F P PKV+S V+H      P  P   + L+++   AF +RRK LR +LK      
Sbjct: 188 LPPGAFTPPPKVSSAVVHLTALSEPRYPADPKILERVVARAFNQRRKMLRAALKGAAPDI 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           E+ L  AGI+   RAE +S+E FC +  ++    +
Sbjct: 248 EDRLLAAGIQPTDRAETVSLEQFCALARVMPGGAE 282


>gi|296116660|ref|ZP_06835270.1| dimethyladenosine transferase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976872|gb|EFG83640.1| dimethyladenosine transferase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 285

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 115/273 (42%), Positives = 169/273 (61%), Gaps = 6/273 (2%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           ++    SL+ +++ + +  +K +GQ+FLLD  I  +IA  +G LD + V+E+G GPG LT
Sbjct: 8   LSTPHESLRDVIARHGLDARKSLGQHFLLDPGITARIASMAGRLDDVNVVEVGPGPGGLT 67

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A  V V+E D +   I+ ++++ HP RL +++DDA++ D        +P +I+
Sbjct: 68  RALLDTPATSVSVVEVDARAIVIMNELAASHPGRLHVVEDDAMRRDLATL--CPAPRQIV 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+GT LL  W+   T    W  LTL+FQ EV ERI A  +S HYGRL+VL+ W  
Sbjct: 126 ANLPYNVGTPLLVGWLRQATE---WARLTLMFQLEVAERICAPPDSDHYGRLAVLSQWVA 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           +  ++  I P  F P PKV S V++ IPH   P P    +++++T  AFG+RRK LR +L
Sbjct: 183 RCGIVMTIPPGAFSPPPKVQSAVVNLIPHTKQPAPALFRAMEQVTAAAFGQRRKMLRGAL 242

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           + +GGE LL  AGI  N RAE L I DF R+ +
Sbjct: 243 RGIGGEALLEAAGIAGNRRAETLDIADFDRLAH 275


>gi|294084204|ref|YP_003550962.1| dimethyladenosine transferase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663777|gb|ADE38878.1| dimethyladenosine transferase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 295

 Score =  238 bits (606), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 127/270 (47%), Positives = 173/270 (64%), Gaps = 11/270 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           SL+ ++    +  +K +GQNFL DLN+ ++IA S+  L G T IEIG GPG LT+ LL  
Sbjct: 27  SLRDLVGAMDMRARKSLGQNFLFDLNLTRRIARSAAPLTG-TTIEIGPGPGGLTRALLLE 85

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GA KV+ IEKD +   +L  + S    RLE+ + DA+  DF  +    +P RIIANLPYN
Sbjct: 86  GATKVLAIEKDWRAPDVLASLLSASRGRLELTEADAM--DFPIWDIEPAPRRIIANLPYN 143

Query: 129 IGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           I T LL  W+  +AD     +ES+TL+FQ+EV  RITA+     YGRLSVL GW   A +
Sbjct: 144 IATTLLIRWLEHAAD-----FESMTLMFQREVALRITAKPGDSAYGRLSVLAGWLADAEI 198

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           +FDI P  F P+PK+TS+V+  IP   P  PC  + L+ +T+ AFG+RRK LR SLK++G
Sbjct: 199 LFDIPPEAFVPAPKITSSVVQIIPLAAPRFPCRQQYLEDVTRHAFGQRRKMLRSSLKKIG 258

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNI 275
           GE LL  AGI+   R ++L IE FC++  +
Sbjct: 259 GEALLLAAGIDPETRPQDLDIESFCKLAEL 288


>gi|288958701|ref|YP_003449042.1| dimethyladenosine transferase [Azospirillum sp. B510]
 gi|288911009|dbj|BAI72498.1| dimethyladenosine transferase [Azospirillum sp. B510]
          Length = 291

 Score =  238 bits (606), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 120/266 (45%), Positives = 167/266 (62%), Gaps = 8/266 (3%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  +K +GQNFLLDLN+  +IA S+    G T IE+G GPG LT+ LL   
Sbjct: 11  LRDVIARFGLEARKALGQNFLLDLNLTGRIARSANLPAGTTAIEVGPGPGGLTRALLATN 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A KVI IE+D++F   L+D+      RL I++ DAL VD E+     +P  I+ANLPYN+
Sbjct: 71  AVKVIAIERDRRFIEALQDVIEAAQGRLSIVEADALTVDPEEL--APAPRAIVANLPYNV 128

Query: 130 GTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
            T LL  W++  D +     SLTL+FQKEV +R+ A+  S  YGRLSV+T WR+ A ++F
Sbjct: 129 ATPLLLGWLARIDAY----VSLTLMFQKEVADRLVAKPGSKAYGRLSVITQWRSDARVLF 184

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GE 247
           ++ P  F P PKV STV+H  P  NP P    +L+++T  AFG+RRK LRQSLK LG  E
Sbjct: 185 NLPPRAFTPPPKVESTVVHLTPRANPEPADWRALEQVTAAAFGQRRKMLRQSLKSLGNAE 244

Query: 248 NLLHQAGIETNLRAENLSIEDFCRIT 273
            LL + GI    RAE + +  F  + 
Sbjct: 245 ALLEETGIAPTARAEEIDVAGFAALA 270


>gi|149186122|ref|ZP_01864436.1| dimethyladenosine transferase [Erythrobacter sp. SD-21]
 gi|148830153|gb|EDL48590.1| dimethyladenosine transferase [Erythrobacter sp. SD-21]
          Length = 273

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 114/269 (42%), Positives = 165/269 (61%), Gaps = 3/269 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +   K +GQNFL D  +L +IA   G+L G  V+EIG GPG LT+ LL  G
Sbjct: 7   LREVIARHGLSASKALGQNFLFDQQLLDRIAALPGALAGRRVLEIGPGPGGLTRALLKAG 66

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +V  IE D++  P L ++   +P +LE+I+ DALK+D +       P  I++NLPYN+
Sbjct: 67  A-EVTAIEMDERCLPALAELGEAYPGKLEVIRGDALKLDHDAIMG-GEPYAILSNLPYNV 124

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT L   W+  + WPP W SLTL+FQ+EV +RI A+  +  YGRLSVL  WR +A +   
Sbjct: 125 GTALFTRWMGGEAWPPLWTSLTLMFQQEVAQRIVAKSGTSAYGRLSVLAQWRAQAKLAMK 184

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-N 248
           +    F P PKV S ++H  P   P     + L+++T+ +FG+RRK LRQSLK + G  +
Sbjct: 185 VHRSAFTPPPKVMSAIVHVEPGAMPEGVSAKVLERLTETSFGQRRKMLRQSLKGVAGAVD 244

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
            L   GI++  RAE LSIE+F  +   LT
Sbjct: 245 TLETLGIDSQRRAETLSIEEFVALARALT 273


>gi|312113661|ref|YP_004011257.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218790|gb|ADP70158.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100]
          Length = 287

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 112/270 (41%), Positives = 167/270 (61%), Gaps = 3/270 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ I+    +  +K +GQNF+LDLN+ ++IA ++G L+G TV+EIG GPG LT+ LL  G
Sbjct: 12  LREIIKDASLSARKSLGQNFILDLNVTRRIARAAGPLNGATVLEIGPGPGGLTRALLIEG 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A   I IE+D++F P L  I+    +R  +   DA+ +D+  F   +   R++ANLPYNI
Sbjct: 72  ASGAIAIERDERFRPALDQIAEASGDRFRVTFADAMGIDYPAFAAETGANRLVANLPYNI 131

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+  W++   WPP+++ + ++ QKEV ER+ A   S HYGRL+V+  +R +A ++F 
Sbjct: 132 ATPLIVGWLTEARWPPWFDRIVVMVQKEVAERLVADVGSDHYGRLAVIAQFRARARILFT 191

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           + P VF P PKV S ++  +P    P       L+++T  AFG+RRK LR SL  LG + 
Sbjct: 192 LPPSVFTPPPKVASALVEIVPRPQAPDAVPTSWLERVTAAAFGQRRKMLRSSLASLGADT 251

Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNIL 276
             LL  AGI+   RAE L++EDF R+   L
Sbjct: 252 ARLLADAGIDPAERAERLTVEDFIRLAQAL 281


>gi|23015617|ref|ZP_00055388.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 276

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 122/273 (44%), Positives = 167/273 (61%), Gaps = 7/273 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  +K +GQ+FL DLN+  +IA ++G L   TVIEIG GPG LT+ LL  G
Sbjct: 7   LRDVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLSVGTVIEIGPGPGGLTRALLDAG 66

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR VI IE+D +   I  +I+  +P RLEII  DA+ +D      +  P RI+ANLPYNI
Sbjct: 67  ARHVIAIERDDRAIAIQNEIAEAYPGRLEIIAADAMTIDAAGLGEM--PRRIVANLPYNI 124

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+        +E L L+FQKEV +R+ A   S HYGRLSV+T W  +   +F+
Sbjct: 125 STALLLGWLRRAQA---FERLILMFQKEVVDRLAAAPRSDHYGRLSVITQWLCEVRPLFN 181

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-E 247
           +    F P P VTSTV+  IP   P+ P   E+L+++T  AFG+RRK LR SLK LGG E
Sbjct: 182 VDRRAFTPPPAVTSTVVDLIPRSQPLAPARFETLERVTAAAFGQRRKMLRSSLKPLGGAE 241

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            LL + GI    RAE + +E FC +   L + Q
Sbjct: 242 ELLERTGILPTARAEEIPVEGFCALARALDERQ 274


>gi|85710400|ref|ZP_01041464.1| dimethyladenosine transferase [Erythrobacter sp. NAP1]
 gi|85687578|gb|EAQ27583.1| dimethyladenosine transferase [Erythrobacter sp. NAP1]
          Length = 275

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/268 (41%), Positives = 160/268 (59%), Gaps = 3/268 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++  ++ + +   K +GQNFLLD  +L +IA   G L G  V+E+G GPG LT+ LL  G
Sbjct: 7   IRETIAKHGLSASKALGQNFLLDEQLLDRIAALPGDLSGARVLEVGPGPGGLTRALLRAG 66

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V  IE D++  P L+++S   P +L +I+ DA+K+D     +   P  +++NLPYN+
Sbjct: 67  AR-VTAIEMDRRCLPALEELSEAFPGQLTVIEGDAMKLDHGAIMD-GEPFHVLSNLPYNV 124

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT L   W+S   WPP W SLTL+FQ+EV ERI AQ     YGRL+VL  WR KA +   
Sbjct: 125 GTALFVKWLSGQDWPPQWLSLTLMFQREVAERIVAQPGGSAYGRLAVLAQWRAKAKLAMK 184

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-N 248
           +    F P PKV S ++H  P   P      +L+++T+ AFG+RRK LRQSLK + G  +
Sbjct: 185 VHRSAFTPPPKVMSAIVHVTPAEAPADVSSRTLERLTEAAFGQRRKMLRQSLKSVPGALD 244

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
            L   GIE   RAE +S+ +F  +   +
Sbjct: 245 ALQSVGIEETRRAETVSVAEFVALAKAV 272


>gi|87198908|ref|YP_496165.1| dimethyladenosine transferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|119365043|sp|Q2G9Z2|RSMA_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|87134589|gb|ABD25331.1| dimethyladenosine transferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 273

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/269 (43%), Positives = 160/269 (59%), Gaps = 4/269 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +   K +GQNFL D  +L +IA   G L G  V+E+G GPG LT+ LL  G
Sbjct: 7   LRDVVNRHGLYATKALGQNFLFDEQLLDRIARVPGKLKGENVLEVGPGPGGLTRALLRAG 66

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A KV  IE D++  P L +++   P +L +I+ DA K+  E  F+   P  + ANLPYN+
Sbjct: 67  A-KVTAIEMDKRCLPALAELADAFPGQLTVIEGDATKIAPETLFD--GPWHVAANLPYNV 123

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+L   W+S   WPP W+SLTL+FQ EV ERI AQ  +  YGRL+VL  WR    +   
Sbjct: 124 GTQLFTGWLSGQDWPPQWKSLTLMFQLEVAERIVAQPGTDAYGRLAVLAQWRATPRIATR 183

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-N 248
           +    F P PKV S +IH  P   P       L+++T+ AFG+RRK LRQSLK L G  +
Sbjct: 184 VHRSAFTPPPKVMSAIIHVEPAAMPEGVSARMLERVTEAAFGQRRKMLRQSLKGLPGALD 243

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
            L   GI+   RAE LS+EDF  I  +LT
Sbjct: 244 ALETLGIDPQRRAETLSVEDFVAIARLLT 272


>gi|58038777|ref|YP_190741.1| dimethyladenosine transferase [Gluconobacter oxydans 621H]
 gi|62900455|sp|Q5FU61|RSMA_GLUOX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|58001191|gb|AAW60085.1| Putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Gluconobacter oxydans 621H]
          Length = 303

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/268 (43%), Positives = 165/268 (61%), Gaps = 6/268 (2%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           SL+  +  + +  KK +GQ+FLLD  I  +IA   G L G +V+EIG GPG LT+ LL  
Sbjct: 36  SLRDTIQAHGLDAKKSLGQHFLLDPGICARIAALGGDLTGRSVVEIGPGPGGLTRALLDT 95

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A +V V+E D++ +P+L ++++ +P+RL +++ DALK+D        +P +IIANLPYN
Sbjct: 96  PASRVDVVEIDERAWPLLDELATYYPDRLHVVRQDALKLDAATL--APAPRQIIANLPYN 153

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + T LL  W+   +    WE L+L+FQ EV ERI A   S  YGRL+VL+ W    ++  
Sbjct: 154 VATPLLVGWLRQASQ---WERLSLMFQLEVAERICAAPGSSAYGRLAVLSQWCASCSVAL 210

Query: 189 DISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            I P  F P PKV S V   IPH   P P    +++++T  AFG+RRK LR SLK +GGE
Sbjct: 211 RIPPAAFSPPPKVHSAVAVIIPHAEQPSPQLFRAMEQVTAAAFGQRRKMLRSSLKSIGGE 270

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNI 275
            LL QA IE   RAE LS+ +F R+  +
Sbjct: 271 RLLEQAEIEPTRRAETLSVAEFARLAEL 298


>gi|85374607|ref|YP_458669.1| dimethyladenosine transferase [Erythrobacter litoralis HTCC2594]
 gi|122544064|sp|Q2N8W9|RSMA_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|84787690|gb|ABC63872.1| dimethyladenosine transferase [Erythrobacter litoralis HTCC2594]
          Length = 281

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/272 (40%), Positives = 164/272 (60%), Gaps = 4/272 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +   K +GQNFL D  +L +IA   G L+   V+EIG GPG LT+ LL  G
Sbjct: 7   LRDVIAKHGLSASKALGQNFLFDAQLLDRIAGIPGGLENRAVLEIGPGPGGLTRALLKAG 66

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V  IE D++  P L ++S  +P +L +I  DA+K+D  +   +  P  ++ANLPYN+
Sbjct: 67  AR-VTAIEMDRRCLPALAELSEVYPGKLSVIHGDAMKLDHAEL--MGEPFAVVANLPYNV 123

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT L   W+  +TWPP W SLTL+FQ+EV +RI +   +  YGRL+VL  WR+ A+M   
Sbjct: 124 GTALFVRWLGGETWPPQWTSLTLMFQQEVAQRIVSTPGTSAYGRLAVLAQWRSAASMPMK 183

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GGEN 248
           +    F P PKV S ++H  P   P      +L+++T+ AFG+RRK LRQSLK + G   
Sbjct: 184 VHRSAFTPPPKVMSAIVHVTPDEMPEGVSARTLERLTEAAFGQRRKMLRQSLKGVPGAVE 243

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            L +  IE   RAE +++E+F  +   L  ++
Sbjct: 244 TLAEVAIEETRRAETVTVEEFVALARRLGASR 275


>gi|114328859|ref|YP_746016.1| dimethyladenosine transferase [Granulibacter bethesdensis CGDNIH1]
 gi|114317033|gb|ABI63093.1| dimethyladenosine transferase [Granulibacter bethesdensis CGDNIH1]
          Length = 286

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/266 (41%), Positives = 163/266 (61%), Gaps = 6/266 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  +K +GQ+FLLD +++ +I   +G + G T IEIG GPG LT+ LL   
Sbjct: 19  LRDVIARHGLEARKALGQHFLLDPHLMARIVREAGPMQGRTAIEIGPGPGGLTRALLETA 78

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +V+ IE D +  P L++++  +P+RL +++ DA++ D       + P RI+ANLPYN+
Sbjct: 79  AERVVAIELDHRAIPALEELAGFYPDRLTVLEADAMRADLGTL--TTGPRRIVANLPYNV 136

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+        +ES+TL+FQ+EV ERI A   S  YGRL VL  W  +  M+  
Sbjct: 137 GTPLLVGWLRQAA---LFESMTLMFQQEVAERICAAPGSDAYGRLGVLAQWTCRVEMLMS 193

Query: 190 ISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           + P  F P PKV S V    P    P P    +++++T  AFG+RRK LR +LK LGGE 
Sbjct: 194 VPPGAFHPPPKVYSAVAALWPREEQPSPALFTAMERVTAAAFGQRRKMLRGALKSLGGEG 253

Query: 249 LLHQAGIETNLRAENLSIEDFCRITN 274
           LL +AGI  + RAE L+IE+F R+  
Sbjct: 254 LLSRAGIAGDRRAETLTIEEFDRLAR 279


>gi|148553332|ref|YP_001260914.1| dimethyladenosine transferase [Sphingomonas wittichii RW1]
 gi|148498522|gb|ABQ66776.1| dimethyladenosine transferase [Sphingomonas wittichii RW1]
          Length = 276

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 108/269 (40%), Positives = 160/269 (59%), Gaps = 4/269 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +   K +GQNFLLD  +L +IA   G LDG TV E+G GPG LT+ LL  G
Sbjct: 11  LREVIARHGLSANKALGQNFLLDGQLLDRIARVPGDLDGATVYEVGPGPGGLTRALLGAG 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V+ +E+D +    L++++     RL +I  DA+K+D  +         I +NLPYN+
Sbjct: 71  A-SVVAVERDDRCLAALEELNQASGGRLRVISADAMKID--ERAEAGDGAHIASNLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT L   W++ D WPP+W SLTL+FQKEV ERI A+  S  YGRL+VL  WR    +  +
Sbjct: 128 GTALFVRWMTLDAWPPWWRSLTLMFQKEVAERIVAKPGSAAYGRLAVLAQWRATPVIAMN 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GGEN 248
           +    F P PKV S ++H +P   P    + +++ +T  AFG+RRK LRQSLK + G   
Sbjct: 188 VHRSAFVPPPKVMSAIVHVVPAAQPEGASMATIETLTAAAFGQRRKMLRQSLKGVKGAVE 247

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
            L   GI+   RAE +++++F  +   L+
Sbjct: 248 ALATVGIDPERRAETVTVDEFVALARALS 276


>gi|144897574|emb|CAM74438.1| Ribosomal RNA adenine methylase transferase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 279

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 123/273 (45%), Positives = 167/273 (61%), Gaps = 7/273 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +L+ + +  +K +GQ+FLLDLN+  +IA ++G+L   T IEIG GPG LT+ LL   
Sbjct: 8   LRDVLNAHGLTARKSLGQHFLLDLNLTGRIARAAGNLATGTTIEIGPGPGGLTRALLDND 67

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR VI IE+D +   I  +I + +P RLEII  DAL+V+        +P RI+ANLPYNI
Sbjct: 68  ARHVIAIERDDRAIAIQNEIMAAYPGRLEIIAADALEVEAATLGE--APRRIVANLPYNI 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+        +ESLTL+FQKEV +R+ A   SP YGRLSV+T W      +F+
Sbjct: 126 STVLLLAWLRRIDA---FESLTLMFQKEVVDRLAAAPRSPDYGRLSVITQWLCDVRPLFN 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-E 247
           +    F P P V STV+  IP   P+ P  +E+L+K+T  AFG+RRK LR SLK LG  E
Sbjct: 183 VDKRAFTPPPNVMSTVVQLIPRSQPLAPARMETLEKVTAAAFGQRRKMLRSSLKSLGPVE 242

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           ++L   GI    RAE L++  FC +   L   Q
Sbjct: 243 DMLAATGIAGTARAEELTVSQFCTLAEYLDRQQ 275


>gi|167646487|ref|YP_001684150.1| dimethyladenosine transferase [Caulobacter sp. K31]
 gi|167348917|gb|ABZ71652.1| dimethyladenosine transferase [Caulobacter sp. K31]
          Length = 288

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 119/263 (45%), Positives = 166/263 (63%), Gaps = 11/263 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +L+ + ++  K  GQ+FLLDLNI +KIA  +G  +G TVIE+G GPG LT+ LL  G
Sbjct: 24  LREVLAEHDLLANKSFGQHFLLDLNITRKIARLAGVGEGDTVIEVGPGPGGLTRTLLETG 83

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V+ +E D++F P+L+D+S     RL I+Q DALKVD         P  +++NLPYN+
Sbjct: 84  AR-VVAVEMDKRFLPLLEDLSVAADGRLTIVQGDALKVDMAAVAG--GPAHMVSNLPYNV 140

Query: 130 GTRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           GT LL NW++     PF   S+TL+FQKEV +RI A  +   YGRL+V++     A ++ 
Sbjct: 141 GTPLLINWLTG----PFRPLSMTLMFQKEVADRIAADVDDDAYGRLAVVSQTVCTAKVVM 196

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           D+    F P PKV S V+  +P L P P    + +L+K+T  AFG+RRK LR SLK LGG
Sbjct: 197 DLPARAFTPPPKVASAVVRLVP-LTPAPDKAMVAALEKVTAAAFGQRRKMLRSSLKGLGG 255

Query: 247 ENLLHQAGIETNLRAENLSIEDF 269
             L  +AGI  + RAE + +E F
Sbjct: 256 AALCEKAGINPDARAETIPVEGF 278


>gi|296282381|ref|ZP_06860379.1| dimethyladenosine transferase [Citromicrobium bathyomarinum JL354]
          Length = 274

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/269 (41%), Positives = 157/269 (58%), Gaps = 3/269 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +   K +GQNFL D  +L +IA   G L G  V+E+G GPG LT+ LL  G
Sbjct: 7   LREVIAAHGLSASKALGQNFLFDEQLLARIAAVPGDLSGRNVLEVGPGPGGLTRALLRAG 66

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A KV  IE D++  P L ++    P +L +I+ DALK+D +  F+   P  I++NLPYN+
Sbjct: 67  A-KVTAIEMDRRCLPALAELGDAFPGQLTVIEGDALKIDHDAIFD-GEPYAILSNLPYNV 124

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT L   W+  + WPP W SLTL+FQ+EV +RI AQ     YGRL+VL  WR  A +   
Sbjct: 125 GTALFTRWMGGEAWPPNWTSLTLMFQQEVAQRIVAQPGGSAYGRLAVLAQWRGTAKLAMK 184

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-N 248
           +    F P PKV S ++H  P   P       L+++T  AFG+RRK LRQSLK + G  +
Sbjct: 185 VHRSAFTPPPKVMSAIVHVTPAAMPDGVSAAKLEQVTAAAFGQRRKMLRQSLKGVPGALD 244

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
            L   GI+   RAE L + +F  +   L+
Sbjct: 245 ALETLGIDPQRRAETLDVGEFVVLARALS 273


>gi|83591771|ref|YP_425523.1| dimethyladenosine transferase [Rhodospirillum rubrum ATCC 11170]
 gi|119365056|sp|Q2RXA9|RSMA_RHORT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83574685|gb|ABC21236.1| dimethyladenosine transferase [Rhodospirillum rubrum ATCC 11170]
          Length = 288

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 167/270 (61%), Gaps = 7/270 (2%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T  +    L+ +++ + +  ++ +GQNFL DLN+  +IA + G +D  TVIEIG GPG L
Sbjct: 11  TPGDGLPPLREVIATHGLDARRSLGQNFLFDLNLTGRIARAGGEIDQGTVIEIGPGPGGL 70

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           T+ LL  GAR+VI IE+D +   +L +I++  P RLE I+ DAL +D        +P R+
Sbjct: 71  TRALLGAGARRVIAIERDSRCRGVLAEIAAVWPGRLETIEGDALDIDVAALGE--APRRV 128

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           IANLPYN+ T LL  W+   +    +E   L+FQKEV +R+ A+  +  YGRLSV+T W 
Sbjct: 129 IANLPYNVATPLLIGWLRHAS---AFERFVLMFQKEVVDRLAARPGTKDYGRLSVITQWL 185

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQS 240
            +   +FD++P  F P PKV STV+   P   P+ P  +E+L+++T  AFG+RRK LR S
Sbjct: 186 CEVRPLFDVNPRAFTPPPKVVSTVVRIDPRPQPLAPARMETLERVTAAAFGQRRKMLRAS 245

Query: 241 LKRLG-GENLLHQAGIETNLRAENLSIEDF 269
           LK LG  E L   AG++   RAE + +E F
Sbjct: 246 LKALGDAEGLCAAAGLDPTARAETIPVEGF 275


>gi|329890126|ref|ZP_08268469.1| dimethyladenosine transferase [Brevundimonas diminuta ATCC 11568]
 gi|328845427|gb|EGF94991.1| dimethyladenosine transferase [Brevundimonas diminuta ATCC 11568]
          Length = 268

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/270 (43%), Positives = 166/270 (61%), Gaps = 7/270 (2%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           SL+  L  + +  KK  GQ+FLLDLN+ +KI   +G  DG  VIE+G GPG LT+ LL  
Sbjct: 5   SLRETLDAHGLSAKKSFGQHFLLDLNVTRKIVRYAGPFDGRAVIEVGPGPGGLTRALLES 64

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A KV+++EKD +F P+L ++      RL I++ DALKV   +   +  P  +++NLPYN
Sbjct: 65  DAGKVVLVEKDPRFIPLLSELDDGS-GRLTIVEADALKVKEAEL--VEGPAHLVSNLPYN 121

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           +GT LL  W++   W P   +LTL+FQKEV ER+ AQ     YGRL+V++    +A ++ 
Sbjct: 122 VGTPLLIKWLTG-PWTPC--ALTLMFQKEVAERVVAQPGEDAYGRLAVISQAVAEARIVM 178

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            +    F P PKV S V+H IP    P P  L+ L+++T  AFG+RRK LR SLK+LGG 
Sbjct: 179 HLPAAAFTPPPKVASAVVHLIPLAERPAPDRLKRLERVTAAAFGQRRKMLRSSLKQLGGA 238

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
            L   AGIE + RAE + +  F R+ + LT
Sbjct: 239 ALCEAAGIEPDARAETIDVAGFLRLADALT 268


>gi|221234694|ref|YP_002517130.1| dimethyladenosine transferase [Caulobacter crescentus NA1000]
 gi|220963866|gb|ACL95222.1| dimethyladenosine transferase [Caulobacter crescentus NA1000]
          Length = 281

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 113/274 (41%), Positives = 166/274 (60%), Gaps = 9/274 (3%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+  L  + ++ +K  GQ+FLLDLN+ +KIA  +   +G TV+E+G GPG LT+ LL  G
Sbjct: 14  LREALERHDLMARKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGGLTRALLETG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V+ IEKD +F P+L +++     RLE+++ DALKVD  +      P  +++NLPYN+
Sbjct: 74  AR-VVAIEKDSRFLPLLAEVAEVAEGRLELVEGDALKVDAAQ--AAGGPAHVVSNLPYNV 130

Query: 130 GTRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           GT+LL NW++     PF   S+TL+FQKEV +RI AQ     YGRL+V+     +A  + 
Sbjct: 131 GTQLLINWLTG----PFRPLSMTLMFQKEVADRIVAQPGDDAYGRLAVIAQTLCEARTVM 186

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           D+    F P PKV S V+  +P   P P   + +L+++T  AFG+RRK LR SLK LGG 
Sbjct: 187 DLPAKAFTPPPKVASAVVRLVPKAEPPPAEVVAALERVTAAAFGQRRKMLRSSLKALGGA 246

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           +L  +AG+  + RAE + +  F  +        D
Sbjct: 247 DLCERAGVSPDARAEVIDLAGFLDLARATLGGAD 280


>gi|326386744|ref|ZP_08208365.1| dimethyladenosine transferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208797|gb|EGD59593.1| dimethyladenosine transferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 281

 Score =  224 bits (572), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 113/268 (42%), Positives = 156/268 (58%), Gaps = 4/268 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  +K +GQNFL D  +L +IA   G L G  V+E+G GPG LT+ LL  G
Sbjct: 9   LRDVVARHGLSAQKSLGQNFLFDEQLLDRIAAVPGKLAGADVLEVGPGPGGLTRALLRAG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V  IE D++  P L ++    P +L +I+ DA+K+  E  F       I ANLPYN+
Sbjct: 69  AR-VTAIEMDRRCLPALAELGEAFPGQLRVIEGDAMKIAPETLFE--GEWHIAANLPYNV 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT L   W+S   WPP W SLTL+FQ EV ERI A+  S  YGRL++L+ WR    +   
Sbjct: 126 GTGLFTGWLSGQAWPPRWRSLTLMFQLEVAERIVAKTGSDAYGRLAILSQWRATPRIAMK 185

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-N 248
           +    F P PKV S ++H  P   P      +L+++T+ AFG+RRK LRQSLK L G  +
Sbjct: 186 VHRSAFTPPPKVMSAIVHVEPAEMPDGVSARTLERVTEAAFGQRRKMLRQSLKGLPGALD 245

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
            L   GI+   RAE L + DF  I  I+
Sbjct: 246 ALETLGIDPQRRAETLDVADFVAIARIM 273


>gi|295689681|ref|YP_003593374.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756]
 gi|295431584|gb|ADG10756.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756]
          Length = 272

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 113/267 (42%), Positives = 166/267 (62%), Gaps = 9/267 (3%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+  L  + ++ +K  GQ+FLLDLN+ +KIA  +   +G TV+E+G GPG LT+ LL  G
Sbjct: 9   LREALERHDLMARKSFGQHFLLDLNVTRKIARLAQIGEGDTVVEVGPGPGGLTRALLETG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V+ IEKD +F P+L +++     RLE+++ DALKVD  +      P  +++NLPYN+
Sbjct: 69  AR-VVAIEKDSRFLPLLSEVAEVADGRLELVEGDALKVDAAQ--AAGGPAHVVSNLPYNV 125

Query: 130 GTRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           GT+LL NW++     PF   S+TL+FQKEV +RI AQ +   YGRL+V+     +A  + 
Sbjct: 126 GTQLLINWLTG----PFRPLSMTLMFQKEVADRIVAQPDDDAYGRLAVIAQTLCEAKTVM 181

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           D+    F P PKV S V+  +P  +P P   + +L+++T  AFG+RRK LR SLK LGG 
Sbjct: 182 DLPAKAFTPPPKVASAVVRLVPRQDPPPAEIVAALERVTAAAFGQRRKMLRSSLKALGGG 241

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274
            L  +AGI  + RAE + +  F  +  
Sbjct: 242 ELCEKAGISPDARAEVIDLAGFLALAK 268


>gi|294012542|ref|YP_003546002.1| dimethyladenosine transferase [Sphingobium japonicum UT26S]
 gi|292675872|dbj|BAI97390.1| dimethyladenosine transferase [Sphingobium japonicum UT26S]
          Length = 280

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/269 (41%), Positives = 163/269 (60%), Gaps = 5/269 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +   K +GQNFLLD  +L +IA   G L+G    E+G GPG LT+ +L  G
Sbjct: 12  LREVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGPLEGQPAFEVGPGPGGLTRAILRAG 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A K++ +E+D++  P L ++ +  P +L ++  DA++VD            IIANLPYN+
Sbjct: 72  A-KLVAVERDRRCLPALAELDAAFPGQLRVLSGDAMEVDARA--EAGEGAHIIANLPYNV 128

Query: 130 GTRLLFNWISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           GT LL  W+SA+  P P+W +LTL+FQ EV ERI A+    HYGRL+VL+ WR+ A +  
Sbjct: 129 GTALLIGWLSAEWSPLPWWSTLTLMFQMEVAERIVAKPGGDHYGRLAVLSQWRSDARIAM 188

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247
            +    F P PKV S V+H  P   P    L+ L+++T  AFG+RRK LRQSLK L G  
Sbjct: 189 KVHRSAFTPPPKVMSAVVHITPRPAPEGVQLKHLERLTATAFGQRRKMLRQSLKGLPGAL 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             L   GI+   RAE +S+E+F  +  +L
Sbjct: 249 EALEAVGIDPQRRAETVSVEEFVEVARVL 277


>gi|330993925|ref|ZP_08317855.1| Ribosomal RNA small subunit methyltransferase A [Gluconacetobacter
           sp. SXCC-1]
 gi|329758871|gb|EGG75385.1| Ribosomal RNA small subunit methyltransferase A [Gluconacetobacter
           sp. SXCC-1]
          Length = 281

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/267 (41%), Positives = 164/267 (61%), Gaps = 6/267 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+  ++ + +  +K +GQ+FLLD  I  +IA  +G L G  V+E+G GPG LT+ LL   
Sbjct: 13  LRETIARHGLDARKALGQHFLLDPGITARIAGLAGDLAGQNVVEVGPGPGGLTRALLDSE 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +V+ +E D +   I+ +++S+   RLE+I+ DA+++D        +P ++IANLPYN+
Sbjct: 73  AGRVVAVEVDTRAVAIITELASRAGGRLEVIEADAMRLDLTTL--CPAPRQVIANLPYNV 130

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+        W  LTL+FQ+EV ERI A   S HYGRL VL  W  +  ++  
Sbjct: 131 GTPLLVGWLRQAA---AWTRLTLMFQQEVAERICAAPGSAHYGRLGVLAQWTCRCGVLMH 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           I P  F P P+V S V+  IPH + P      +++++T  AFG+RRK LR +LK LGGE+
Sbjct: 188 IPPGAFSPPPRVHSAVVGLIPHAHQPDAALFRAMEQVTAAAFGQRRKMLRGALKPLGGES 247

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNI 275
           LL +AGI+ + RAE L I +F R+  +
Sbjct: 248 LLAEAGIDGSRRAETLDIAEFDRLARL 274


>gi|103486963|ref|YP_616524.1| dimethyladenosine transferase [Sphingopyxis alaskensis RB2256]
 gi|118600899|sp|Q1GT31|RSMA_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|98977040|gb|ABF53191.1| dimethyladenosine transferase [Sphingopyxis alaskensis RB2256]
          Length = 271

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 111/268 (41%), Positives = 155/268 (57%), Gaps = 3/268 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+  +  + +   K +GQNFL D  +L +IA   G LDG TV E+G GPG LT+ LL  G
Sbjct: 4   LRETVRVHGLSASKALGQNFLFDEQLLDRIAAIPGDLDGATVFEVGPGPGGLTRALLRTG 63

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR VI +E+D++  P+L D++   P +L +I DDA+ VD +       P  I+ANLPYN+
Sbjct: 64  AR-VIAVERDERCLPLLADLAEAFPGQLTVIADDAMAVDVDALTG-GDPYHIVANLPYNV 121

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT L   W+    WPP W SLTL+FQ EV ERI A   +  YGRL+VL  WR +A +   
Sbjct: 122 GTALFTRWLEPAAWPPRWLSLTLMFQLEVAERIVAPVGTSAYGRLAVLAQWRARARIAMK 181

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +    F P PKV S ++   P   P       L ++T++ FG+RRK LRQSLK + G   
Sbjct: 182 VHRSAFTPPPKVMSAIVQLTPADQPPGVDPRILSRLTEKGFGQRRKMLRQSLKGIDGAVA 241

Query: 250 LHQA-GIETNLRAENLSIEDFCRITNIL 276
             +A GI+   RAE +S+ ++  +   L
Sbjct: 242 AAEALGIDPTRRAETVSVAEWVALARAL 269


>gi|329850882|ref|ZP_08265727.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19]
 gi|328841197|gb|EGF90768.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19]
          Length = 275

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 118/273 (43%), Positives = 166/273 (60%), Gaps = 7/273 (2%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +L+  L  + ++ KK  GQ+FLLDLNI +KI    G  DG TVIE+G GPG LT+ LL  
Sbjct: 6   TLRESLEQHGLMAKKAFGQHFLLDLNITRKIVRLGGPFDGDTVIEVGPGPGGLTRALLES 65

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANL 125
            A  VI +EKD +F  +L +++    +R E+I+ DALKVD  +      +S    I++NL
Sbjct: 66  EAAHVIAVEKDSRFLELLGELNEVFGDRFEVIEGDALKVDEAQLLADRKLSPQAHIVSNL 125

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+GT LL  W++   W P  +SLTL+FQ EV  R+ A      YGRLSV++     A+
Sbjct: 126 PYNVGTPLLIKWLTG-PWRP--KSLTLMFQLEVALRVVAPVGDDDYGRLSVISQILCDAS 182

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            + D+    F P P+V S V+  IP  + P P  +++L+K+T  AFG+RRK LR SLK L
Sbjct: 183 KIMDLPARAFTPPPRVDSAVVRLIPKADRPAPAVIKNLEKVTAAAFGQRRKMLRSSLKSL 242

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           GGE LL +A I+  LRAE +  + F R+   L+
Sbjct: 243 GGEVLLDKAAIDATLRAEQVGPDGFLRLATALS 275


>gi|16125931|ref|NP_420495.1| dimethyladenosine transferase [Caulobacter crescentus CB15]
 gi|27151598|sp|Q9A7N5|RSMA_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|13423097|gb|AAK23663.1| dimethyladenosine transferase [Caulobacter crescentus CB15]
          Length = 258

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 111/262 (42%), Positives = 160/262 (61%), Gaps = 9/262 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+FLLDLN+ +KIA  +   +G TV+E+G GPG LT+ LL  GAR V+ IEKD +
Sbjct: 3   RKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGGLTRALLETGAR-VVAIEKDSR 61

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           F P+L +++     RLE+++ DALKVD  +      P  +++NLPYN+GT+LL NW++  
Sbjct: 62  FLPLLAEVAEVAEGRLELVEGDALKVDAAQ--AAGGPAHVVSNLPYNVGTQLLINWLTG- 118

Query: 142 TWPPFWE-SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              PF   S+TL+FQKEV +RI AQ     YGRL+V+     +A  + D+    F P PK
Sbjct: 119 ---PFRPLSMTLMFQKEVADRIVAQPGDDAYGRLAVIAQTLCEARTVMDLPAKAFTPPPK 175

Query: 201 VTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S V+  +P   P P   + +L+++T  AFG+RRK LR SLK LGG +L  +AG+  + 
Sbjct: 176 VASAVVRLVPKAEPPPAEVVAALERVTAAAFGQRRKMLRSSLKALGGADLCERAGVSPDA 235

Query: 260 RAENLSIEDFCRITNILTDNQD 281
           RAE + +  F  +        D
Sbjct: 236 RAEVIDLAGFLDLARATLGGAD 257


>gi|332185231|ref|ZP_08386980.1| dimethyladenosine transferase [Sphingomonas sp. S17]
 gi|332014955|gb|EGI57011.1| dimethyladenosine transferase [Sphingomonas sp. S17]
          Length = 274

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 114/268 (42%), Positives = 159/268 (59%), Gaps = 5/268 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +   K +GQNFL D  +L +IA   G L    V+EIG GPG LT+ LL  G
Sbjct: 10  LRDVIARHGLSASKSLGQNFLFDGQLLARIAAIPGDLTDQEVLEIGPGPGGLTRALLMAG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            R V  IE+D++  P L ++S   P RL +I+ DAL+V+  + F       I++NLPYN+
Sbjct: 70  GR-VTAIERDRRCIPALAELSEAFPGRLRVIEGDALRVNAPELFEGKP--HIVSNLPYNV 126

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+S   W P+W+S TL+FQKEV ERI A  +   YGRL+VLT WR++A +   
Sbjct: 127 GTPLLVGWLSG-AWLPWWQSCTLMFQKEVAERIVAAADQSAYGRLAVLTQWRSQARIAMP 185

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GGEN 248
           +    F P PKV S V+H  P   P      +L+++T  AFG+RRK LRQSLK + G   
Sbjct: 186 VHRSAFTPPPKVMSAVVHITPAPAPEGVTFRTLERLTAAAFGQRRKMLRQSLKPIPGAVE 245

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
            L   GI+   RAE LS+ +F  +   L
Sbjct: 246 ALESIGIDPARRAETLSVAEFVALARAL 273


>gi|254420085|ref|ZP_05033809.1| dimethyladenosine transferase [Brevundimonas sp. BAL3]
 gi|196186262|gb|EDX81238.1| dimethyladenosine transferase [Brevundimonas sp. BAL3]
          Length = 269

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 164/270 (60%), Gaps = 7/270 (2%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           SL+  L  + ++ KK  GQ+FLLDLN+ +KI   +G  +G  VIE+G GPG LT+ LL  
Sbjct: 6   SLRETLDAHGLLAKKSFGQHFLLDLNVTRKIVRLAGPFEGRAVIEVGPGPGGLTRALLES 65

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A  V+++EKD +F P+L ++      RL I++ DALKV       +S P  +++NLPYN
Sbjct: 66  DAGPVVLVEKDPRFIPLLSELDDGS-GRLTIVEADALKVKEADL--VSGPAHMVSNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           +GT LL  W++   W P   SLTL+FQKEV ER+ A      YGRL+V++     A ++ 
Sbjct: 123 VGTALLIKWLTG-PWLP--HSLTLMFQKEVAERVAAGPGDDAYGRLAVISQAVCTARIVM 179

Query: 189 DISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            +    F P PKV S V+H +P    P P  L+ L+++T  AFG+RRK LR SLK+LGG 
Sbjct: 180 HLPAAAFTPPPKVASAVVHLVPLDERPSPERLKKLERVTAAAFGQRRKMLRSSLKQLGGA 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
            L   AGIE ++RAE + +  F R+ + L 
Sbjct: 240 ELCEAAGIEPDVRAETVDVAGFLRLADALA 269


>gi|162149099|ref|YP_001603560.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545158|ref|YP_002277387.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161787676|emb|CAP57272.1| putative dimethyladenosine transferase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532835|gb|ACI52772.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 275

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 108/274 (39%), Positives = 161/274 (58%), Gaps = 6/274 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  +K +GQ+FLLD  I  +IA  +G L G  V+E+G GPG LT+ LL   
Sbjct: 5   LRDVIARHGLDARKALGQHFLLDPGITARIAALAGDLTGRHVVEVGPGPGGLTRALLDSP 64

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  +E D +   I+ ++++  P RL +++ DA + D  +     +P +++ANLPYN+
Sbjct: 65  AETVTAVEVDARAVAIIAELATLFPGRLHLVEADATRQDLTRL--CPAPRQVVANLPYNV 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+   +    WE LTL+FQ EV ERI A  +S  YGRL+VL  W  +  ++  
Sbjct: 123 GTPLLVGWLRQAS---AWERLTLMFQMEVAERICAAPDSAQYGRLAVLAQWTCRCALVMR 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           I P  F P PKV S V+  IPH   P P    +++++T  AFG+RRK LR SL+ +GGE 
Sbjct: 180 IPPGAFSPPPKVYSAVVSLIPHATQPDPALFRAMEQVTAAAFGQRRKMLRGSLRPIGGEA 239

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           LL  AGI+   RAE L I +F  +     + Q +
Sbjct: 240 LLAAAGIDGARRAETLDIAEFDLLARCHAERQGL 273


>gi|297717804|gb|ADI50045.1| dimethyladenosine transferase [Candidatus Odyssella
           thessalonicensis L13]
          Length = 281

 Score =  218 bits (555), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 114/273 (41%), Positives = 168/273 (61%), Gaps = 8/273 (2%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++K  +  Y ++ KK +GQNFL ++ I++KIA S+G L  +TV+EIG GPG LT+ LL  
Sbjct: 8   TVKATVEQYGLMAKKSLGQNFLFNMEIVRKIARSAGCLKEVTVLEIGPGPGGLTRALLEA 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GA++V+ IE D +    LK++      +L+IIQ DAL +  +     S PI+I+ANLPYN
Sbjct: 68  GAQEVVAIEHDPRCIIALKELVDAAEGKLQIIQADALTISPQDLLP-SRPIKIVANLPYN 126

Query: 129 IGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +GT+LL  W+   D       S+TL+FQKEV  RI AQ  +  YGRL+VL  + T+ T +
Sbjct: 127 VGTQLLIRWLHCLDN----IVSMTLMFQKEVALRIVAQPKTADYGRLTVLAQYLTQPTKV 182

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           FD+ P  F P PKV S+++H +P +        L  L+KIT  AFG+RRK +R SL  + 
Sbjct: 183 FDLPPGAFSPPPKVKSSIVHLVPKVLSEQDLALLPYLEKITHAAFGQRRKMIRSSLSAVL 242

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            E+ +  A +    RAE L++E++  +  IL D
Sbjct: 243 TEDQIQAANVAVTARAEELALENYIELARILKD 275


>gi|307294656|ref|ZP_07574498.1| dimethyladenosine transferase [Sphingobium chlorophenolicum L-1]
 gi|306879130|gb|EFN10348.1| dimethyladenosine transferase [Sphingobium chlorophenolicum L-1]
          Length = 280

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/275 (40%), Positives = 161/275 (58%), Gaps = 5/275 (1%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
             K   L+ +++ + +   K +GQNFLLD  +L +IA   G +      E+G GPG LT+
Sbjct: 6   GTKLPPLREVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGPIKDRPAFEVGPGPGGLTR 65

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
            +L  GA K++ +E+D +  P L ++ +  P +L +I  DA++VD            IIA
Sbjct: 66  AILRAGA-KLVAVERDHRCLPALAELDTAFPGQLRVISGDAMEVDARA--EAGEGAHIIA 122

Query: 124 NLPYNIGTRLLFNWISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           NLPYN+GT LL  W+S +  P P+W SLTL+FQ EV ERI A+    HYGRL++L+ WR+
Sbjct: 123 NLPYNVGTALLIGWLSTNWTPLPWWSSLTLMFQMEVAERIVAKPGGDHYGRLAILSQWRS 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            A +   +    F P PKV S V+H  P   P    L+ L+++T  AFG+RRK LRQSLK
Sbjct: 183 DARIAMKVHRSAFTPPPKVMSAVVHITPKRAPEGVQLKHLERLTAAAFGQRRKMLRQSLK 242

Query: 243 RLGGE-NLLHQAGIETNLRAENLSIEDFCRITNIL 276
            L G  + L   GI+   RAE +S+E+F  +  ++
Sbjct: 243 GLPGALDALEAVGIDPQRRAETVSVEEFVAVARVM 277


>gi|197105173|ref|YP_002130550.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1]
 gi|226732606|sp|B4RBS4|RSMA_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|196478593|gb|ACG78121.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1]
          Length = 285

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 116/267 (43%), Positives = 162/267 (60%), Gaps = 7/267 (2%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +L+  L  + +  KK  GQ+FLLDLNI +KIA  +   DG  VIE+G GPG LT+ LL  
Sbjct: 8   TLREALEAHGLWAKKAFGQHFLLDLNITRKIARLAQVGDGDVVIEVGPGPGGLTRALLET 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GAR VI +EKD++F P+L++++   P+ L ++  DAL  D E   +   P  +++NLPYN
Sbjct: 68  GAR-VIAVEKDERFRPLLQEVADAAPH-LTLVFGDALTAD-EAALSAGRPAHLVSNLPYN 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           +GT LL  W++   W P   SLTL+FQKEV +RITA      YGRL+V+      A  + 
Sbjct: 125 VGTPLLIKWLTG-PWTP--ASLTLMFQKEVADRITAAPGEDAYGRLAVIAQATADARPVM 181

Query: 189 DISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           D+    F P PKV S V+   P    P P  L++L+K+T  AFG+RRK LR SLK LGGE
Sbjct: 182 DVPARAFTPPPKVESAVVRLEPRAARPSPERLDALQKVTAAAFGQRRKMLRSSLKALGGE 241

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274
            L+  AG++   RAE + +  F  + +
Sbjct: 242 PLITAAGLDPAARAEVVPVAGFLALAD 268


>gi|148261607|ref|YP_001235734.1| dimethyladenosine transferase [Acidiphilium cryptum JF-5]
 gi|146403288|gb|ABQ31815.1| dimethyladenosine transferase [Acidiphilium cryptum JF-5]
          Length = 272

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/277 (37%), Positives = 162/277 (58%), Gaps = 6/277 (2%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M   +  L+ +++ + +  K+ +GQ+FLLD ++L +IA  +G LDG+ VIE+G GPG LT
Sbjct: 1   MTQGAPPLREVIARHGLSAKRALGQHFLLDPDLLARIARLAGPLDGVNVIEVGPGPGGLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A  V  IE D +    + ++++  P RL +++     +D +    + +P  I+
Sbjct: 61  RALLASDAAGVTAIELDPRAVGAVAELAAADPGRLRVLEG--DALDLDLAALVPAPRAIV 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN GT +L  W+        + S+TL+FQ+EV ERI A   SP YGRL+VL     
Sbjct: 119 ANLPYNAGTAMLLRWLHQAAC---FRSMTLMFQREVAERIVAAPGSPAYGRLAVLAALTV 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
           +  ++  + P  F P PKV S V+  +PH + + P  L  ++++T  AFG+RRK LR SL
Sbjct: 176 RGAIVLTLPPGAFSPPPKVDSAVVRLVPHEDQLQPALLAKVERVTAAAFGQRRKMLRGSL 235

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           K LGG  L   AGI+ + RAE L+  +F  +  +L D
Sbjct: 236 KALGGATLAEAAGIDPSRRAETLAPAEFLSLARLLPD 272


>gi|302383692|ref|YP_003819515.1| dimethyladenosine transferase [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194320|gb|ADL01892.1| dimethyladenosine transferase [Brevundimonas subvibrioides ATCC
           15264]
          Length = 270

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 111/265 (41%), Positives = 161/265 (60%), Gaps = 7/265 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+  L  + ++ KK  GQ+FLLDLNI +KI   +G  +G  VIE+G GPG LT+ ++   
Sbjct: 7   LRESLEAHGLLAKKSFGQHFLLDLNITRKIVRLAGPFEGRAVIEVGPGPGGLTRAIVESD 66

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V+++EKD +F P+L ++ +    RL II+ DALKV       ++ P  +++NLPYN+
Sbjct: 67  AGPVVLVEKDPRFLPLLNELDTGD-GRLRIIEADALKVVEADL--VAGPAHVVSNLPYNV 123

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W++   W P   ++TL+FQKEV ERI A      YGRL+V+     +A ++  
Sbjct: 124 GTPLLIKWLTG-PWIP--HAMTLMFQKEVAERIVAAPGDDAYGRLAVIAQAVAEARIVMH 180

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           +    F P PKV S V+H +PH + P    L+ L+ +T  AFG+RRK LR SLK+LGG  
Sbjct: 181 LPAAAFTPPPKVASAVVHLVPHADRPDREMLKRLETVTAAAFGQRRKMLRSSLKQLGGGA 240

Query: 249 LLHQAGIETNLRAENLSIEDFCRIT 273
           L   AGI+ + RAE + I  F R+ 
Sbjct: 241 LCEAAGIDPDARAETIDIAGFLRLA 265


>gi|326405097|ref|YP_004285179.1| ribosomal RNA small subunit methyltransferase A [Acidiphilium
           multivorum AIU301]
 gi|325051959|dbj|BAJ82297.1| ribosomal RNA small subunit methyltransferase A [Acidiphilium
           multivorum AIU301]
          Length = 272

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/277 (37%), Positives = 161/277 (58%), Gaps = 6/277 (2%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M   +  L+ +++ + +  K+ +GQ+FLLD ++L +IA  +G L G+ VIE+G GPG LT
Sbjct: 1   MTQGAPPLREVIARHGLSAKRALGQHFLLDPDLLARIARLAGPLAGVNVIEVGPGPGGLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A  V  IE D +    + ++++  P RL +++ D   +D +    + +P  I+
Sbjct: 61  RALLASDAAGVTAIELDPRAVGAVAELAAADPGRLRVVEGD--ALDLDLAALVPAPRAIV 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN GT +L  W+        + S+TL+FQ+EV ERI A   SP YGRL+VL     
Sbjct: 119 ANLPYNAGTAMLLRWLHQAAC---FRSMTLMFQREVAERIVAAPGSPAYGRLAVLAALTV 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
           +  ++  + P  F P PKV S V+  +PH + + P  L  + ++T  AFG+RRK LR SL
Sbjct: 176 RGAIVLTLPPGAFSPPPKVDSAVVRLVPHEDQLQPALLAKVGRVTAAAFGQRRKMLRGSL 235

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           K LGG  L   AGI+ + RAE L+  +F  +  +L D
Sbjct: 236 KALGGATLAEAAGIDPSRRAETLTPAEFLSLARLLPD 272


>gi|296532229|ref|ZP_06894977.1| dimethyladenosine transferase [Roseomonas cervicalis ATCC 49957]
 gi|296267446|gb|EFH13323.1| dimethyladenosine transferase [Roseomonas cervicalis ATCC 49957]
          Length = 235

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/232 (44%), Positives = 147/232 (63%), Gaps = 7/232 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG GPG LT+ LL   A  V  +E D++    L+++S+ +P RL I++ DAL++D  
Sbjct: 1   MLEIGPGPGGLTRALLDSPAAHVTAVELDRRAIAALEELSAAYPGRLSIVEGDALRIDAA 60

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
               + +P RI+ANLPYN+GT LL  W+        +ESLTL+FQ+EV ERITA  ++ H
Sbjct: 61  TL--LPAPRRIVANLPYNVGTALLIGWLHRAE---LFESLTLMFQQEVAERITAAPDTEH 115

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEA 229
           YGRL+VL+ WR +  M   + P  F P PKV S ++H +PH   P P  + +L+++T  A
Sbjct: 116 YGRLAVLSQWRCQCRMTLRLPPGAFSPPPKVWSAIVHLVPHGTVPDPALMAALERVTAAA 175

Query: 230 FGKRRKTLRQSLKRLG-GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           FG+RRK LR SLK LG  E LL  AGIE   RAE LS+ +F R+  +L   +
Sbjct: 176 FGQRRKMLRSSLKTLGRPEALLEAAGIEATRRAETLSVAEFERLATLLLAQE 227


>gi|83945291|ref|ZP_00957640.1| dimethyladenosine transferase [Oceanicaulis alexandrii HTCC2633]
 gi|83851461|gb|EAP89317.1| dimethyladenosine transferase [Oceanicaulis alexandrii HTCC2633]
          Length = 284

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/283 (40%), Positives = 160/283 (56%), Gaps = 18/283 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +   K  GQ++LLDLN+  KIA   G +   TV E+G GPG LT+ LL+ G
Sbjct: 9   LREVIAEHGLGADKRFGQHYLLDLNLTAKIARLCGDMSEATVFEVGPGPGGLTRGLLSEG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +V VIEKD++F P L  IS   P R  II+ DALKVD E          + +NLPYN+
Sbjct: 69  AARVTVIEKDRRFIPALAQISDAVPGRFSIIEADALKVD-ESTLPFEGSRILASNLPYNV 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+ AD  P +W  L L+FQKEV ER+ A+     YGRL++L     K+   F 
Sbjct: 128 GTALLIKWLEAD--PIWWTRLVLMFQKEVAERVVARAGDKQYGRLAILAAAVAKSRYAFT 185

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCC-----LESLKKITQEAFGKRRKTLRQSL--- 241
           +    F P PKV S V+     + P+P       L++L  +T+ AFG+RRKTLR+SL   
Sbjct: 186 VPARAFTPPPKVDSAVV----VIEPLPEAQRFTDLKALSIVTESAFGQRRKTLRKSLGPA 241

Query: 242 ---KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
               R+  E LL +AGI+   RAE ++ E F  +       +D
Sbjct: 242 ASQTRVSPEALLEEAGIDPGARAETIAPEGFFTLARAWRAARD 284


>gi|83032434|gb|ABB97063.1| mitochondrial transcription factor B-like protein [Acanthamoeba
           castellanii]
          Length = 307

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/288 (37%), Positives = 169/288 (58%), Gaps = 17/288 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + ++  Y++   K + QNF+LDLN+  K+A ++G L G TVIE+G GPG+LT+ LLT GA
Sbjct: 11  RELVRLYRLSAVKELSQNFILDLNVTDKLARAAGPLRGSTVIEVGPGPGSLTRSLLTNGA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---------ISSPIRI 121
           RKVIV+EKD++F P L+ +      RLE++  D LK+D                 SP+RI
Sbjct: 71  RKVIVVEKDKRFMPALETLQQASGGRLELVFGDMLKIDERDLLKNEPKAENWADESPVRI 130

Query: 122 IANLPYNIGTRLLFNWIS--ADTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           + NLP+ + T LL  W+    +   PF     S+TL+FQ EVG+RI A+  +  YGRLSV
Sbjct: 131 VGNLPFAVATELLLKWLRQIPEREGPFAHGRASMTLMFQLEVGKRIEARSGTSEYGRLSV 190

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRK 235
           +T     A   F++   VF P PKVT T++   P + P+ P  ++ L+ + ++ FG+RRK
Sbjct: 191 MTQQSCTAQTCFNVPASVFVPPPKVTGTMVRIEPRVTPLAPAPVKELEVVCRQVFGQRRK 250

Query: 236 TLRQSLKRLGGEN--LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            L  ++  LG  +  L+ +AG++   R + L++E++C +     +  D
Sbjct: 251 MLSNAITTLGEGSLPLIARAGLDPTKRPDALTVEEWCSLARAYKEWMD 298


>gi|218660682|ref|ZP_03516612.1| dimethyladenosine transferase [Rhizobium etli IE4771]
          Length = 173

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/165 (55%), Positives = 123/165 (74%), Gaps = 1/165 (0%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G L+G TV E+G GPG LT+ +L LG
Sbjct: 10  LRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGGLEGTTVFEVGPGPGGLTRAILALG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI IE+D +  P L +I+  +P RLE+I+ DALK DFE      SP++IIANLPYN+
Sbjct: 70  AKKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAP-ESPVKIIANLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
           GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL
Sbjct: 129 GTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVADEDDDHYGRL 173


>gi|315500017|ref|YP_004088820.1| dimethyladenosine transferase [Asticcacaulis excentricus CB 48]
 gi|315418029|gb|ADU14669.1| dimethyladenosine transferase [Asticcacaulis excentricus CB 48]
          Length = 277

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 112/276 (40%), Positives = 157/276 (56%), Gaps = 11/276 (3%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGPGNLTQM 64
           SL+  L  + ++ KK  GQ+FLLDLN+ +KI     E   S DG  VIE+G GPG LT+ 
Sbjct: 5   SLRESLEAHGLMAKKSFGQHFLLDLNVTRKIVRLGQEGGNSFDGQVVIEVGPGPGGLTRA 64

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRI 121
            L   A  V+ +EKD +F  +L ++ + +P R  +++ DALKV+         +     +
Sbjct: 65  ALESEATYVLAVEKDARFIDLLTELDTAYPGRFGVVEADALKVNEPALLAERGLPPQAHL 124

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           ++NLPYN+GT LL  W++   W P  +SLTL+FQ EV  R+ A      YGRL V++   
Sbjct: 125 VSNLPYNVGTPLLIKWLTG-PWQP--KSLTLMFQLEVALRVVAPVGDDDYGRLGVISQVL 181

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQS 240
                + D+    F P PKV S V+  IP    P    + +L+ +T  AFG+RRK LR S
Sbjct: 182 CVCEKLMDLPARAFTPPPKVDSAVVRLIPRAERPDARVIHNLETLTAAAFGQRRKMLRAS 241

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE LL + GI+  LRAEN+S  DF R+   L
Sbjct: 242 LKALGGETLLAKVGIDPTLRAENISPADFLRLAEAL 277


>gi|94497692|ref|ZP_01304260.1| dimethyladenosine transferase [Sphingomonas sp. SKA58]
 gi|94422909|gb|EAT07942.1| dimethyladenosine transferase [Sphingomonas sp. SKA58]
          Length = 244

 Score =  198 bits (503), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 101/247 (40%), Positives = 148/247 (59%), Gaps = 5/247 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L +IA   G L   +  E+G GPG LT+ +L  G R ++ +E+D +  P L +++   P
Sbjct: 1   MLDRIAAIPGPLTDASAFEVGPGPGGLTRAILRAGGR-LVAVERDDRCLPALAELADAFP 59

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP-PFWESLTLL 153
            +L++I  DA+++D +      +   IIANLPYN+GT LL  W+SA   P P+W SLTL+
Sbjct: 60  GQLKVIAGDAMQIDAQAEAGDGA--HIIANLPYNVGTPLLVGWLSAAWTPLPWWSSLTLM 117

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213
           FQ EV ERI A+  + HYGRL+VL+ WR+ A +   +    F P PKV S V+H  P   
Sbjct: 118 FQMEVAERIVAKPGTDHYGRLAVLSQWRSDARIAMKVHRSAFTPPPKVMSAVVHITPKPT 177

Query: 214 PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-NLLHQAGIETNLRAENLSIEDFCRI 272
           P    L+ L+++T  AFG+RRK +RQSLK L G  + L   GI+   RAE +S+E+F  +
Sbjct: 178 PEGVQLKLLERLTAAAFGQRRKMMRQSLKGLPGALDALDAEGIDPQRRAETVSVEEFVAV 237

Query: 273 TNILTDN 279
              +  N
Sbjct: 238 ARRMGRN 244


>gi|209964862|ref|YP_002297777.1| dimethyladenosine transferase [Rhodospirillum centenum SW]
 gi|209958328|gb|ACI98964.1| dimethyladenosine transferase [Rhodospirillum centenum SW]
          Length = 276

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 158/279 (56%), Gaps = 10/279 (3%)

Query: 3   MNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + SH   L+ +++ + +  +K +GQ+FLLDLN+ ++I   +G L G+ V+E+G GPG 
Sbjct: 1   MADLSHLPPLRDVIAEHGLGARKALGQHFLLDLNLTRRIVREAGDLSGVAVVEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L+   AR+V+ +E+D +F   L D+ +    RL +++ DAL VD      + +P  
Sbjct: 61  LTRALVESAAREVVAVERDSRFAAALADVMAAADGRLRLVEADALTVDPVDL--VPAPRA 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +I+NLPYN+GT LL  W+        + SLTL+FQKEV ERI A+  +  YGRL+V+  W
Sbjct: 119 VISNLPYNVGTPLLIGWLKRIAE---YRSLTLMFQKEVAERIVARPRTEAYGRLAVMCQW 175

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239
                ++FD+    F P P+V S + H  P   P       +++ +   AFG+RRK LR 
Sbjct: 176 LADCRILFDVPARAFTPPPRVDSAIAHLTPRARPADDPDFRTMEALVAAAFGQRRKMLRA 235

Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           SLK +    E LL   GI    RAE + +  F  +   L
Sbjct: 236 SLKSVVREPEPLLESVGIAPTSRAEEVDVAGFVTLAKAL 274


>gi|114569772|ref|YP_756452.1| dimethyladenosine transferase [Maricaulis maris MCS10]
 gi|122316226|sp|Q0AQC3|RSMA_MARMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|114340234|gb|ABI65514.1| dimethyladenosine transferase [Maricaulis maris MCS10]
          Length = 289

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/271 (38%), Positives = 154/271 (56%), Gaps = 17/271 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  KK  GQ+FLLDLN+  KIA  +G +     IE+G GPG LT+ +L  G
Sbjct: 9   LRDVIASHDLGAKKSFGQHFLLDLNLTAKIARLAGDMSRDQAIEVGPGPGGLTRAILAEG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  ++ +E D +F   L +I+     RL + Q DAL+VD            I++NLPYN+
Sbjct: 69  AASLLAVEMDSRFLGALDEINVASGGRLTVEQGDALEVDETALLTGPGDKVILSNLPYNV 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL  W+ A+  P +W    L+FQ+EV +R+ AQ     YGRL+V++  R +A +   
Sbjct: 129 GTQLLIKWLQAE--PIWWRRAVLMFQREVADRVVAQPGDKAYGRLAVISQSRCQAHLALK 186

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE-----SLKKITQEAFGKRRKTLRQSLKRL 244
           I    F P PKV S V+     L+P+P   +     +L++IT  AFG+RRKTLR+SL + 
Sbjct: 187 IPARAFTPPPKVESAVV----VLDPLPEAQQFKDVVALERITASAFGQRRKTLRRSLAQA 242

Query: 245 GGEN------LLHQAGIETNLRAENLSIEDF 269
            G+       LL +AG+    RAE + I  F
Sbjct: 243 AGQGGTSADALLEEAGLNAGDRAEVIDITGF 273


>gi|58698105|ref|ZP_00373028.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535351|gb|EAL59427.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 288

 Score =  188 bits (478), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 111/259 (42%), Positives = 151/259 (58%), Gaps = 12/259 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQNF+L   I KKI   +GSL+   VIEIG G G LT+ +L    + ++ IEKD+
Sbjct: 24  PKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSLLSIEKDR 83

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                   + ++H  +  II+ DAL V  E+   I  P+++IANLPYNI   L   W++ 
Sbjct: 84  DLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVLFLKWLNN 141

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                F+ +LTL+FQKEV +RITA+ NS  YG LSVL+         FDI P  FFP PK
Sbjct: 142 IK---FFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIEPKEFFPRPK 198

Query: 201 VTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGI 255
           + S+VI   P   PIP     LE+L ++T+  F +RRK LR SL+ +    E +L  A +
Sbjct: 199 IHSSVITVNPL--PIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHTETVLENAKL 256

Query: 256 ETNLRAENLSIEDFCRITN 274
             N R ENL+IE FC + N
Sbjct: 257 SGNERPENLTIEQFCLLAN 275


>gi|225630006|ref|YP_002726797.1| dimethyladenosine transferase [Wolbachia sp. wRi]
 gi|254808269|sp|C0R5G4|RSMA_WOLWR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225591987|gb|ACN95006.1| dimethyladenosine transferase [Wolbachia sp. wRi]
          Length = 272

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 111/259 (42%), Positives = 151/259 (58%), Gaps = 12/259 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQNF+L   I KKI   +GSL+   VIEIG G G LT+ +L    + ++ IEKD+
Sbjct: 8   PKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSLLSIEKDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                   + ++H  +  II+ DAL V  E+   I  P+++IANLPYNI   L   W++ 
Sbjct: 68  DLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVLFLKWLNN 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                F+ +LTL+FQKEV +RITA+ NS  YG LSVL+         FDI P  FFP PK
Sbjct: 126 IK---FFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIEPKEFFPRPK 182

Query: 201 VTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGI 255
           + S+VI   P   PIP     LE+L ++T+  F +RRK LR SL+ +    E +L  A +
Sbjct: 183 IHSSVITVNPL--PIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHTETVLENAKL 240

Query: 256 ETNLRAENLSIEDFCRITN 274
             N R ENL+IE FC + N
Sbjct: 241 SGNERPENLTIEQFCLLAN 259


>gi|304320043|ref|YP_003853686.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503]
 gi|303298946|gb|ADM08545.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503]
          Length = 273

 Score =  188 bits (477), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 109/268 (40%), Positives = 153/268 (57%), Gaps = 9/268 (3%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           T++  + ++ KK +GQ+FLLD+NI +KIA       G  VIEIG GPG LT+ LL  GA 
Sbjct: 12  TVVRSHGLLAKKTLGQHFLLDMNITRKIAALCALSPGEDVIEIGPGPGGLTRALLEAGA- 70

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            +  IE+D +  PIL +IS+  P +L  ++ DAL VD+           I +NLPYNI T
Sbjct: 71  ALTTIERDDRIVPILSEISAAFPGQLTPLEGDALSVDYRALMPGGG--VIASNLPYNIST 128

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            LL  W++    P  W  + L+FQ+EVG+RI A   S  YGRLSVL+    + T+ F + 
Sbjct: 129 ELLVRWLTLSPRP--WRRMVLMFQREVGDRILASPGSKAYGRLSVLSQIAARPTLGFHLP 186

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
              F P PKV S+V+ F+P     P  + +L+++T  AFG+RRK +R++L  L GE L  
Sbjct: 187 ARAFTPPPKVASSVLVFLPPATE-PQNVAALERVTAAAFGQRRKMIRKTLAPLYGEKLGP 245

Query: 252 QAGIETNL---RAENLSIEDFCRITNIL 276
                  L   RAE LS+E F  +   L
Sbjct: 246 LLDGLGLLPTQRAEELSVETFRALAEAL 273


>gi|225677138|ref|ZP_03788137.1| dimethyladenosine transferase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590805|gb|EEH12033.1| dimethyladenosine transferase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 270

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/259 (42%), Positives = 152/259 (58%), Gaps = 12/259 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQNF+L   I KKI   +GSL+   VIEIG G G LT+ +L    + ++ IEKD+
Sbjct: 8   PKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSLLSIEKDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                   + ++H  + +II+ DAL V  E+   I  P+++IANLPYNI   L   W++ 
Sbjct: 68  DLVKHHDQLLNEHQGKYKIIEADALHVIEEEL--IERPVKVIANLPYNISVVLFLKWLNN 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                F+ +LTL+FQKEV +RITA+ NS  YG LSVL+         FDI P  FFP PK
Sbjct: 126 IK---FFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIGPKEFFPRPK 182

Query: 201 VTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGI 255
           + S+VI   P   PIP     LE+L ++T+  F +RRK LR SL+ +    E +L  A +
Sbjct: 183 IHSSVITVNPL--PIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHAETVLENAKL 240

Query: 256 ETNLRAENLSIEDFCRITN 274
             N R ENL+IE FC + N
Sbjct: 241 SGNERPENLTIEQFCLLAN 259


>gi|42519999|ref|NP_965914.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034443|ref|ZP_01314444.1| hypothetical protein Wendoof_01000753 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|62900551|sp|Q73IR3|RSMA_WOLPM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|42409736|gb|AAS13848.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 286

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 151/261 (57%), Gaps = 16/261 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQNF+L   I KKI   +GSL+   VIEIG G G LT+ +L    + ++ IEKD+
Sbjct: 24  PKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSLLSIEKDR 83

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                   + ++H  +  II+ DAL +  E+   I  P+++IANLPYNI   L   W+ +
Sbjct: 84  DLVKHHDQLLNEHQGKYRIIEADALHIIEEEL--IERPVKVIANLPYNISVALFLKWLDS 141

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                F+ SLTL+FQKEV +RITA+ NS  YG LSVL+         FDI P  FFP PK
Sbjct: 142 IK---FFTSLTLMFQKEVADRITARPNSKDYGPLSVLSQLLCDIKKEFDIEPKEFFPRPK 198

Query: 201 VTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQA 253
           + S+VI     +NP+P       LE+L K+ +  F +RRK LR SL+ +    E +L  A
Sbjct: 199 IHSSVI----TVNPLPTPKFVVNLETLIKLIRAVFAQRRKMLRNSLQNITNHAETVLENA 254

Query: 254 GIETNLRAENLSIEDFCRITN 274
            +  N R ENL+IE FC + N
Sbjct: 255 KLSGNERPENLTIEQFCLLAN 275


>gi|329114154|ref|ZP_08242916.1| Ribosomal RNA small subunit methyltransferase A [Acetobacter
           pomorum DM001]
 gi|326696230|gb|EGE47909.1| Ribosomal RNA small subunit methyltransferase A [Acetobacter
           pomorum DM001]
          Length = 227

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/224 (41%), Positives = 133/224 (59%), Gaps = 6/224 (2%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           +E+G GPG LT+ LL   A  V  +E D +   ++++++  +PNRL++++ DALK D  +
Sbjct: 1   MEVGPGPGGLTRALLNGPAESVTAVELDSRAVLVIQELAGFYPNRLKVVEADALKCDLTE 60

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
               ++P +IIANLPYN+ T LL  W+        WE LTL+FQ EV ERI A  NS HY
Sbjct: 61  L--CAAPRQIIANLPYNVATPLLIGWLRQGN---AWERLTLMFQWEVAERICAAPNSQHY 115

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAF 230
           GRL+VL  W  +  ++  + P  F P P V S V    PH   P P   ++++++T  AF
Sbjct: 116 GRLAVLAQWCAECAIVMKLPPGAFSPPPAVWSAVASITPHAQQPAPALFKAMERVTAAAF 175

Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           G+RRK LR +LK L G+ LL  A I+   RAE L I +F R+  
Sbjct: 176 GQRRKMLRGALKGLNGDKLLAAAEIDGTRRAETLDIAEFDRLAR 219


>gi|328873034|gb|EGG21401.1| Dimethyladenosine transferase [Dictyostelium fasciculatum]
          Length = 470

 Score =  184 bits (468), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 162/287 (56%), Gaps = 21/287 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ ++  Y +  K+ + QNFLLDLNI  KI   +G     TVIE+GAGPG LT+ LLT G
Sbjct: 9   IQDLIRMYGLSAKQQLSQNFLLDLNITDKICREAGGFKDCTVIEVGAGPGGLTRSLLTAG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD---------FEKF-FNISSPI 119
           A+KVI +E D++F P L+ +      RL ++  D +KVD          EK  +   S +
Sbjct: 69  AKKVIAVEMDRRFIPALRMLEEASEGRLSVVMGDMMKVDEGELLRHFQAEKMPWEEKSKV 128

Query: 120 RIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
           +I+ NLP+N+GT L+  W+         +      + L+FQKE+ ERI A  +S +YGRL
Sbjct: 129 KIVGNLPFNVGTHLMLKWVRQIKPREGLYAYGRVPMVLMFQKELAERIIAPVDSHNYGRL 188

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGK 232
           +V+ G    + +++D+   VF P PKV ++VIH  P + PI      E L+ I +  F  
Sbjct: 189 AVMVGQECHSKIIYDLPGKVFVPPPKVDASVIHIEPLVEPIGQVDSKEHLEFICRSLFNH 248

Query: 233 RRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           RRKT+  +LK +  G E LL    I+ + R ++L+ ++F  ITN  T
Sbjct: 249 RRKTISNALKPMGKGSEGLL--GDIDPSRRPQSLTFKEFADITNRYT 293


>gi|57239132|ref|YP_180268.1| dimethyladenosine transferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579080|ref|YP_197292.1| dimethyladenosine transferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|93141342|sp|Q5HBC6|RSMA_EHRRW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|57161211|emb|CAH58125.1| dimethyladenosine transferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417706|emb|CAI26910.1| Dimethyladenosine transferase [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 262

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/266 (39%), Positives = 152/266 (57%), Gaps = 10/266 (3%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            +Y I PKK + Q F+   +I  KI   +G++   ++IEIG G G +T  +L    +K+I
Sbjct: 3   DNYMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLI 62

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRL 133
            IEKD +  PI   I  +   + E I  DAL +D     NI+  P+++IANLPY+I T L
Sbjct: 63  SIEKDSRLLPIHDKIIKKFQGKYEFILSDALDIDLR---NIAKPPVKVIANLPYSIATLL 119

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L  WI+   +  F+ S TL+FQKEV +RI AQ N+ +YG LS+LT        M D  P 
Sbjct: 120 LIKWIN---YINFFHSFTLMFQKEVADRIIAQPNNKNYGTLSILTQLFADVYKMQDFGPE 176

Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLL 250
           +F P PKV S+VI+ +    P      + L+KI +  F +RRK +R +LK++    + +L
Sbjct: 177 IFSPKPKVFSSVINIVVLPQPRFDVNYDKLRKIVKITFNQRRKMIRSTLKQITNNTDEIL 236

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           H   I  NLR ENLSI+ FC I N +
Sbjct: 237 HSLNIPNNLRPENLSIKQFCDIANCI 262


>gi|58617138|ref|YP_196337.1| dimethyladenosine transferase [Ehrlichia ruminantium str. Gardel]
 gi|93141341|sp|Q5FH30|RSMA_EHRRG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|58416750|emb|CAI27863.1| Dimethyladenosine transferase [Ehrlichia ruminantium str. Gardel]
          Length = 262

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/266 (39%), Positives = 152/266 (57%), Gaps = 10/266 (3%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            +Y I PKK + Q F+   +I  KI   +G++   ++IEIG G G +T  +L    +K+I
Sbjct: 3   DNYMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLI 62

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRL 133
            IEKD +  PI   I  +   + E I  DAL +D     NI+  P+++IANLPY+I T L
Sbjct: 63  SIEKDSRLLPIHDKIIKEFQGKYEFILSDALDIDLR---NIAKPPVKVIANLPYSIATLL 119

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L  WI+   +  F+ S TL+FQKEV +RI AQ N+ +YG LS+LT        M D  P 
Sbjct: 120 LIKWIN---YINFFHSFTLMFQKEVADRIIAQPNNKNYGTLSILTQLFADVYKMQDFGPE 176

Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLL 250
           +F P PKV S+VI+ +    P      + L+KI +  F +RRK +R +LK++    + +L
Sbjct: 177 IFSPKPKVFSSVINIVVLPQPRFDVNYDKLRKIVKITFNQRRKMIRSTLKQITNNTDEIL 236

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           H   I  NLR ENLSI+ FC I N +
Sbjct: 237 HSLNIPNNLRPENLSIKQFCDIANCI 262


>gi|73667017|ref|YP_303033.1| dimethyladenosine transferase [Ehrlichia canis str. Jake]
 gi|119365025|sp|Q3YS70|RSMA_EHRCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|72394158|gb|AAZ68435.1| dimethyladenosine transferase [Ehrlichia canis str. Jake]
          Length = 262

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 148/263 (56%), Gaps = 14/263 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +I PKK + Q F+   +I  KI   +G++   ++IEIG G G +T  +L    +++I IE
Sbjct: 6   RIYPKKELSQCFISSSHITDKIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKRLISIE 65

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           KD +  PI K I  +   + E I  DAL +D      I  P++IIANLPY+I T LL  W
Sbjct: 66  KDSRLMPIHKKIVDEFNGKYEFILSDALNIDLRTI--IEPPVKIIANLPYHIATPLLMKW 123

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I+   +  F+ S TL+FQKEV +RI AQ N+ +Y  LSVL    +    M D  P +F P
Sbjct: 124 IN---YIDFFTSFTLMFQKEVADRIVAQPNNKNYSILSVLIQLLSNVYKMEDFGPEIFSP 180

Query: 198 SPKVTSTVIHFI----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLH 251
            PKV S+VI+ I    P  N        L ++ +  FG+RRK +R +LK+L    + +L 
Sbjct: 181 QPKVMSSVINIIVLPKPRFN---VNHNKLSQVLKVTFGERRKMIRSTLKKLINNTDEILQ 237

Query: 252 QAGIETNLRAENLSIEDFCRITN 274
              I  NLR ENLSIE FC+I N
Sbjct: 238 SLNINNNLRPENLSIEQFCKIAN 260


>gi|190570949|ref|YP_001975307.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019465|ref|ZP_03335271.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|226732639|sp|B3CPY6|RSMA_WOLPP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|190357221|emb|CAQ54639.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994887|gb|EEB55529.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 264

 Score =  182 bits (461), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/257 (41%), Positives = 148/257 (57%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQNF+L   I+K+I   +GSL    VIEIG G G LT+ +L    + ++ IEKD 
Sbjct: 8   PKKSLGQNFILSNEIIKRIVALAGSLKDFNVIEIGPGYGALTREILAYNPKFLLSIEKDS 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                 + + ++H  +  II+ DAL V  ++   +  P+++IANLPYNI   L   W++ 
Sbjct: 68  SLVKHHEQLLNEHQGKYRIIEADALNVVEKEL--VECPVKVIANLPYNISVALFLKWLNN 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                F+ +LTL+FQKEV ERITA+ NS  YG LSVL+         FDI P  FFP PK
Sbjct: 126 IK---FFTNLTLMFQKEVAERITAEPNSKDYGSLSVLSQLLCDIKKEFDIEPKEFFPRPK 182

Query: 201 VTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIET 257
           V S+VI   P   P     LE+L K+T+  F +RRK LR SL+ +  +    L  A +  
Sbjct: 183 VYSSVITVKPLPTPRFAVNLETLTKLTRAVFAQRRKMLRNSLQSITSDVSTTLENAKLSG 242

Query: 258 NLRAENLSIEDFCRITN 274
           + R E+L+IE FC + N
Sbjct: 243 DERPESLTIEQFCLLAN 259


>gi|114799371|ref|YP_760849.1| dimethyladenosine transferase [Hyphomonas neptunium ATCC 15444]
 gi|114739545|gb|ABI77670.1| dimethyladenosine transferase [Hyphomonas neptunium ATCC 15444]
          Length = 285

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 105/270 (38%), Positives = 149/270 (55%), Gaps = 21/270 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K +GQ+FL D +ILK+ A ++G L G TVIE+G GPG LT+ +L      +I +E D +
Sbjct: 23  RKALGQHFLFDPSILKRAANAAGPLKGKTVIEVGPGPGGLTRAILNEEPALLIAVETDPR 82

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNIGTRLLFNWI 138
           F   L         RL++I  DA KV +EK       ++P+ IIANLPYN+GT LL +W+
Sbjct: 83  FSEALMSWPEAKNGRLQVIARDARKVHWEKVLQEAGAATPVMIIANLPYNVGTPLLIDWL 142

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            A  W      + L+FQ+EV ERI AQ ++  YGRL+V++   T+  + F + P  F P 
Sbjct: 143 KAGDW---RGPMALMFQREVAERICAQPDTDAYGRLAVISQAVTRPRIAFTLPPGAFRPP 199

Query: 199 PKVTSTVIHFIPHLNPIPCC-----LESLKKITQEAFGKRRKTLRQSLKRLG------GE 247
           PKV S V+ F     P+P       L  L++I   AFG+RRK LR +LK          E
Sbjct: 200 PKVDSAVVEF----EPLPPGERFEHLALLEQIAGAAFGQRRKMLRAALKPFAKKRGMKAE 255

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             L   GI+   RAE L+  +F ++   L 
Sbjct: 256 AWLEDCGIKPTARAETLTQAEFRKLATSLA 285


>gi|254294291|ref|YP_003060314.1| dimethyladenosine transferase [Hirschia baltica ATCC 49814]
 gi|254042822|gb|ACT59617.1| dimethyladenosine transferase [Hirschia baltica ATCC 49814]
          Length = 274

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 145/264 (54%), Gaps = 19/264 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ+FL D +IL + A S+G ++G TVIE+G GPG LT  LL  GA+KVI +E D +F
Sbjct: 13  KSLGQHFLFDPDILNRTALSAGPVEGRTVIEVGPGPGGLTAALLRNGAKKVIAVEMDARF 72

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISAD 141
              L+        RL +I+ D L +D+ K       P++IIANLPYN+GT +L NWI + 
Sbjct: 73  AENLRSWKEYKEGRLSVIEGDGLSLDYPKLVEGEDKPVKIIANLPYNVGTPMLINWIKSG 132

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +W      + L+FQ EV  R+ AQ    HYGRL+VL+       + F + P  F P PKV
Sbjct: 133 SW---RGEMGLMFQHEVAARVCAQPGEKHYGRLAVLSQAVANTHIAFTLPPGAFKPPPKV 189

Query: 202 TSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLL 250
            S+V   +    P+P       L +L+++T  AFG+RRK LR SLK L           L
Sbjct: 190 DSSVAVLM----PLPEDKKYTHLSTLEQVTGAAFGQRRKMLRASLKSLAKTKNMDASEWL 245

Query: 251 HQAGIETNLRAENLSIEDFCRITN 274
               I+   RAE L   +F  +T 
Sbjct: 246 ESCDIDPTRRAETLEQFEFRALTE 269


>gi|68171878|ref|ZP_00545205.1| RRNA 16S rRNA dimethylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658336|ref|YP_507457.1| dimethyladenosine transferase [Ehrlichia chaffeensis str. Arkansas]
 gi|67998701|gb|EAM85426.1| RRNA 16S rRNA dimethylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599793|gb|ABD45262.1| dimethyladenosine transferase [Ehrlichia chaffeensis str. Arkansas]
          Length = 277

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/268 (38%), Positives = 153/268 (57%), Gaps = 9/268 (3%)

Query: 13  ILSHY-KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           I++H  KI PKK + Q F+   +I  +I   +G++   ++IEIG G G +T  +L    +
Sbjct: 14  IMNHISKINPKKELSQCFISSTHITDQIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPK 73

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           K+I IEKD++   I + I  +   + E I  DAL +D      I  P+++IANLPY+I T
Sbjct: 74  KLISIEKDRRLSTIHEKIVEEFQGKYEFILSDALNIDLRDI--IEPPVKVIANLPYHIAT 131

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            LL  W+    +  F+ S TL+FQKEV +RI AQ N+ +YG LS+L    +    M D  
Sbjct: 132 TLLIKWMD---YINFFTSFTLMFQKEVADRIVAQPNNKNYGTLSILIQLLSNVYKMEDFG 188

Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGEN 248
           P +F P PKV S+VI+ I    P        L ++ +  F +RRK +R +LK+L    + 
Sbjct: 189 PEIFSPQPKVMSSVINIIALPEPRFHVNYRKLSQVLKTTFSERRKMIRSTLKKLTNNADE 248

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
           +L    I+ NLR ENLSIE FC+ITN +
Sbjct: 249 MLESLNIDNNLRPENLSIEQFCQITNCI 276


>gi|118600867|sp|Q2GGH6|RSMA_EHRCR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 263

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/262 (38%), Positives = 149/262 (56%), Gaps = 8/262 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI PKK + Q F+   +I  +I   +G++   ++IEIG G G +T  +L    +K+I IE
Sbjct: 6   KINPKKELSQCFISSTHITDQIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKKLISIE 65

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           KD++   I + I  +   + E I  DAL +D      I  P+++IANLPY+I T LL  W
Sbjct: 66  KDRRLSTIHEKIVEEFQGKYEFILSDALNIDLRDI--IEPPVKVIANLPYHIATTLLIKW 123

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +  F+ S TL+FQKEV +RI AQ N+ +YG LS+L    +    M D  P +F P
Sbjct: 124 MD---YINFFTSFTLMFQKEVADRIVAQPNNKNYGTLSILIQLLSNVYKMEDFGPEIFSP 180

Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254
            PKV S+VI+ I    P        L ++ +  F +RRK +R +LK+L    + +L    
Sbjct: 181 QPKVMSSVINIIALPEPRFHVNYRKLSQVLKTTFSERRKMIRSTLKKLTNNADEMLESLN 240

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           I+ NLR ENLSIE FC+ITN +
Sbjct: 241 IDNNLRPENLSIEQFCQITNCI 262


>gi|157826080|ref|YP_001493800.1| dimethyladenosine transferase [Rickettsia akari str. Hartford]
 gi|166221695|sp|A8GPG7|RSMA_RICAH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157800038|gb|ABV75292.1| dimethyladenosine transferase [Rickettsia akari str. Hartford]
          Length = 273

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/278 (39%), Positives = 155/278 (55%), Gaps = 20/278 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K + SH +I P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L    
Sbjct: 7   KHVASH-QINPLKKHGQNFIFDSSLCDKIVRASHLAENSRVLEIGPGTGGLTRSILQKNP 65

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANL 125
             + VIE D++F P+L +I   +PN L II+ DALK+     D++K       + II+NL
Sbjct: 66  ESLTVIETDERFIPLLNEIKEYYPN-LNIIKQDALKINLTDLDYDK-------VTIISNL 117

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY+IGT L+  W+           +TL+ QKEV ERI A  ++  YGRLSV+     K  
Sbjct: 118 PYHIGTELVIRWLKEAR---LITDMTLMLQKEVVERICAMPSTKAYGRLSVICQLIAKVE 174

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL 244
             FD+SP  F+P PKV S ++  IP  NP    L   ++KIT  AF  RRK ++ SLK L
Sbjct: 175 KCFDVSPTAFYPPPKVYSAIVKLIPLANPPSIALINRVEKITTFAFAGRRKMIKSSLKNL 234

Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                 +L Q  I  N RAENL+ +D+ RI   L+ N+
Sbjct: 235 VPNIHEVLTQLKINDNYRAENLAPQDYLRIAMSLSVNK 272


>gi|58584664|ref|YP_198237.1| dimethyladenosine transferase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|81311641|sp|Q5GSM9|RSMA_WOLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|58418980|gb|AAW70995.1| Dimethyladenosine transferase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 261

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/268 (38%), Positives = 149/268 (55%), Gaps = 16/268 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  + + PKK +GQNF+L   I K+I   +G+L+   VIEIG G G LT+ +L    + +
Sbjct: 1   MKKFLLKPKKSLGQNFILSSEITKRIVVLAGNLEDFNVIEIGPGYGALTKEILAHNPKSL 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           + IEKD         + ++H  +  I++ DAL V  E+   I  P+++IANLPYNI   L
Sbjct: 61  LAIEKDSNLVKCHDQLLNEHQGKFRIVEADALYVVEEEL--IERPVKVIANLPYNISLAL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
              W++       + + TL+FQKEV +RI A+ NS  YG LSVL+         FDI P 
Sbjct: 119 FLKWLNKIK---LFTTFTLMFQKEVADRIIARPNSKDYGSLSVLSQLLCDIRREFDIEPK 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
            FFP PKV S+VI     + P+P       LE+L K+T+  F +RRK LR SL+ +    
Sbjct: 176 EFFPRPKVYSSVI----TVKPLPTQRFAVNLEALTKLTRAVFAQRRKMLRNSLQNVTNRT 231

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274
           E  L  A +  N R +NL++E FC + N
Sbjct: 232 ETALENAKLSGNERPKNLTVEQFCLLAN 259


>gi|58696723|ref|ZP_00372268.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537091|gb|EAL60211.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 313

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/297 (38%), Positives = 153/297 (51%), Gaps = 47/297 (15%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQNF+L   I KKI   +GSL+   VIEIG G G LT+ +L    + ++ IEKD+
Sbjct: 8   PKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSLLSIEKDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--- 137
                   + ++H  +  II+ DAL V  E+   I  P+++IANLPYNI   L   W   
Sbjct: 68  DLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVLFLKWLNN 125

Query: 138 --ISADT------------------------------W---PPFWESLTLLFQKEVGERI 162
             I AD                               W     F+ +LTL+FQKEV +RI
Sbjct: 126 RIIEADALHVTEEELIERPVKVIANLPYNISVVLFLKWLNNIKFFTNLTLMFQKEVADRI 185

Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCL 219
           TA+ NS  YG LSVL+         FDI P  FFP PK+ S+VI   P   PIP     L
Sbjct: 186 TARPNSKDYGSLSVLSQLLCDIKKEFDIEPKEFFPRPKIHSSVITVNPL--PIPKFAVNL 243

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITN 274
           E+L ++T+  F +RRK LR SL+ +    E +L  A +  N R ENL+IE FC + N
Sbjct: 244 ETLTRLTRAVFSQRRKMLRNSLQNITNHTETVLENAKLSGNERPENLTIEQFCLLAN 300


>gi|281200359|gb|EFA74579.1| Dimethyladenosine transferase [Polysphondylium pallidum PN500]
          Length = 410

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 165/288 (57%), Gaps = 21/288 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ ++  Y +  K+ + QNFLLDLNI  KI   +G  +  TVIE+GAGPG LT+ LL  G
Sbjct: 11  IQDLIRLYGLSAKQQLSQNFLLDLNITDKICRVAGGFNDCTVIEVGAGPGGLTRSLLNSG 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKF------FNISSPI 119
           A+KVI +E D++F P LK +      RL ++  D   V+     ++F      ++  S +
Sbjct: 71  AKKVIAVEMDRRFIPALKMLEDASDGRLSVVMGDMKDVNEAEILKQFGAVPTDWDKPSKV 130

Query: 120 RIIANLPYNIGTRLLFNWISA-DTWPPFWE----SLTLLFQKEVGERITAQKNSPHYGRL 174
           +II NLP+N+GT L+  WI         +E     + L+FQKE+ +RI A  +S  YGRL
Sbjct: 131 KIIGNLPFNVGTHLMLKWIRQIKPREGLFEFGRVPMILMFQKELADRIIAPVSSHEYGRL 190

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGK 232
           +V+      + +++D+   VF P PKV ++V++  P + PI      E L+ + +E F +
Sbjct: 191 AVMIQQECDSKVVYDLPGKVFVPPPKVDASVVYIEPKVKPIGDLKSKEYLEYVCRELFTQ 250

Query: 233 RRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +RKTL  ++K L  G E+L+   GI+   R +NL++E+  +I+N   D
Sbjct: 251 KRKTLGNAIKCLGNGAESLIE--GIDPTKRPQNLTVEELVKISNRFND 296


>gi|66808105|ref|XP_637775.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4]
 gi|60466213|gb|EAL64275.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4]
          Length = 485

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 165/303 (54%), Gaps = 32/303 (10%)

Query: 1   MTMNNKSHSL------KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEI 54
           MT+ N + SL      + I+  + +  K+ + QNFL+D NI  KI + SG  D  TVIE+
Sbjct: 1   MTIKNLTTSLPPMPKIQEIIRIFGLSAKQQLSQNFLIDKNITDKICKKSGGFDDCTVIEV 60

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           GAGPG LT+ LLT GA+KVI +E D +F+P LK +      R+ +I  + + VD  K   
Sbjct: 61  GAGPGGLTRSLLTSGAKKVIAVEMDPRFYPALKMLEESSGGRMSLIMANMMDVDEAKLLR 120

Query: 115 IS----------SPIRIIANLPYNIGTRLLFNWISA-DTWPPFWE----SLTLLFQKEVG 159
            +          S ++II NLP+N+GT L+  WI         +E     + L+FQKE+ 
Sbjct: 121 DAGAETTNWKDKSKVKIIGNLPFNVGTHLMLKWIRQIAPRQGLYEFGRVPMYLMFQKELS 180

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
           +RI AQ  S  Y RLSV+     + ++++ I    F P PKV ++V+   P ++P+    
Sbjct: 181 DRICAQVGSEEYSRLSVMVQQMCQPSIVYSIPGTAFVPPPKVDASVVAIEPRISPLGD-- 238

Query: 220 ESLKK------ITQEAFGKRRKTLRQSLKRLG--GENLLHQAGIETNLRAENLSIEDFCR 271
           E +K       + +E F +RRK L  ++K LG   E+LL    I+  +R +NL IE F +
Sbjct: 239 EPVKDHHYFEFVCRELFSQRRKKLSNTIKTLGKDAESLLGD-DIDPKIRTQNLQIEQFVK 297

Query: 272 ITN 274
           ITN
Sbjct: 298 ITN 300


>gi|241068617|ref|XP_002408487.1| ribosomal RNA adenine dimethylase, putative [Ixodes scapularis]
 gi|215492475|gb|EEC02116.1| ribosomal RNA adenine dimethylase, putative [Ixodes scapularis]
          Length = 278

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/273 (38%), Positives = 151/273 (55%), Gaps = 15/273 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           + ++I P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L      + 
Sbjct: 10  ASHQINPLKKYGQNFIFDSSLCDKIVHASNLAENSRVLEIGPGTGGLTRSILQKKPESLT 69

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSPIRIIANLP 126
           VIE D++  P+L +I   +PN L II+ DALK++             +I   + II+NLP
Sbjct: 70  VIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSSKSIDYKVTIISNLP 128

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y+IGT L+  W+          ++TL+ QKEV ERI A  ++  YGRLSV+     K   
Sbjct: 129 YHIGTELVIRWLKEAR---LINNMTLMLQKEVVERICAMPSTKAYGRLSVICQLIAKVEK 185

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL- 244
            FD++P  F+P PKV S ++  IP  NP    L   +++IT+ AF  RRK ++ SLK L 
Sbjct: 186 CFDVAPTAFYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKNLV 245

Query: 245 -GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                +L Q  I  N RAENL+ +D+ RI  IL
Sbjct: 246 PNIHEVLTQLKINDNYRAENLTPQDYLRIAEIL 278


>gi|157827650|ref|YP_001496714.1| dimethyladenosine transferase [Rickettsia bellii OSU 85-389]
 gi|166221696|sp|A8GXS7|RSMA_RICB8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157802954|gb|ABV79677.1| dimethyladenosine transferase [Rickettsia bellii OSU 85-389]
          Length = 268

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/265 (37%), Positives = 150/265 (56%), Gaps = 9/265 (3%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           + ++I P K  GQNF+ D ++  KI  +SG  +   V+EIG G G LT+ +L    + + 
Sbjct: 10  ASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSILHKNPKLLT 69

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE D++  P+L +I   HPN L II+ DALK+        ++ I II+NLPY+IGT L+
Sbjct: 70  VIETDERCIPLLNEIKQYHPN-LNIIKQDALKLKLSDLN--TNKITIISNLPYHIGTELV 126

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
             W+   +      S+TL+ QKEV ERI A+ ++  YGRLSV+          FD++P  
Sbjct: 127 IRWLKESS---LVASMTLMLQKEVVERICAKPSTKAYGRLSVICSLIATVEKCFDVAPTA 183

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLH 251
           F+P PKV S ++   P  N P    +  ++ IT+ AF  RRK ++ SLK L      LL 
Sbjct: 184 FYPPPKVYSAIVKLTPLENIPNSDLISKVELITKMAFAGRRKMIKSSLKNLAPNISELLA 243

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
           +  I  N RAENL+  D+  + +++
Sbjct: 244 KLNISNNCRAENLTPNDYLSLASLI 268


>gi|91205019|ref|YP_537374.1| dimethyladenosine transferase [Rickettsia bellii RML369-C]
 gi|119365058|sp|Q1RK29|RSMA_RICBR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91068563|gb|ABE04285.1| Dimethyladenosine transferase [Rickettsia bellii RML369-C]
          Length = 268

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/265 (37%), Positives = 150/265 (56%), Gaps = 9/265 (3%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           + ++I P K  GQNF+ D ++  KI  +SG  +   V+EIG G G LT+ +L    + + 
Sbjct: 10  ASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSILHKNPKLLT 69

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE D++  P+L +I   HPN L II+ DALK+        ++ I II+NLPY+IGT L+
Sbjct: 70  VIETDERCIPLLNEIKQYHPN-LNIIKQDALKLKLSDLN--TNKITIISNLPYHIGTELV 126

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
             W+   +      S+TL+ QKEV ERI A+ ++  YGRLSV+          FD++P  
Sbjct: 127 IRWLKESS---LVASMTLMLQKEVVERICAKPSTKAYGRLSVICSLIATVEKCFDVAPTA 183

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLH 251
           F+P PKV S ++   P  N P    +  ++ IT+ AF  RRK ++ SLK L      LL 
Sbjct: 184 FYPPPKVYSAIVKLTPLENIPNSDLISKVELITKMAFAGRRKMIKSSLKNLAPNISELLA 243

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
           +  I  N RAENL+  D+  + +++
Sbjct: 244 KLNISDNCRAENLTPNDYLSLASLI 268


>gi|269958833|ref|YP_003328621.1| dimethyladenosine transferase [Anaplasma centrale str. Israel]
 gi|269848663|gb|ACZ49307.1| dimethyladenosine transferase [Anaplasma centrale str. Israel]
          Length = 270

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/261 (37%), Positives = 150/261 (57%), Gaps = 9/261 (3%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNF+LD  I ++I   +GS++G  +IE+G G G +T+++L      ++ IEKD + 
Sbjct: 10  KSLGQNFILDPAIAEEIVSYAGSIEGYNIIEVGPGFGTMTEIILRSKVASLLAIEKDCRL 69

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            P  + +  QHP+    I+ D L ++ E+   I++P ++IANLPYNI   LL   +    
Sbjct: 70  SPTHESLMKQHPH-YRYIEHDVLDINLEEL--IAAPSKMIANLPYNISVILLLRMLK--- 123

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +   +E LTL+FQKEV ER+ A+  +  Y  LSVL         + D+ PHVF P PKV 
Sbjct: 124 YIHNFERLTLMFQKEVAERLVAKPGTKSYSILSVLVQLLCDVEKVKDLQPHVFSPPPKVC 183

Query: 203 STVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNL 259
           S+V++  P  N   P     + K+ ++AFG +RKT+R +L     E   LL +  I  ++
Sbjct: 184 SSVVNITPLGNLRFPVDYSYMLKMLKKAFGCKRKTVRNALGLPHQEFDALLAECKIPPSV 243

Query: 260 RAENLSIEDFCRITNILTDNQ 280
           RAENLS+E  C ++N L   Q
Sbjct: 244 RAENLSVEQLCAVSNFLQSRQ 264


>gi|256823429|ref|YP_003147392.1| dimethyladenosine transferase [Kangiella koreensis DSM 16069]
 gi|256796968|gb|ACV27624.1| dimethyladenosine transferase [Kangiella koreensis DSM 16069]
          Length = 269

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/261 (39%), Positives = 149/261 (57%), Gaps = 8/261 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D + +++I ES    +   ++EIG G G +T+ L+     ++ V+E D+ 
Sbjct: 13  RKRFGQNFLSDNHYIQRIVESIAPQESDRLVEIGPGLGAITEHLVD-KVSELHVVELDRD 71

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P L+   SQ+ N L I Q DALK DF +  N   PIR++ NLPYNI T L+F+ ++  
Sbjct: 72  LIPRLEQKFSQNTN-LTIHQSDALKFDFRQLAN-DKPIRVVGNLPYNISTPLIFHLLNQR 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV ERI AQ  +  YGRLSV+T +  +A ++F + P  F P PKV
Sbjct: 130 ES---IKDMYFMLQKEVVERICAQPGTSSYGRLSVMTQYYCQADLLFLVPPGAFQPPPKV 186

Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++   P+ + P P   E  L +I   AFG+RRKTLR SLK+   E  L Q GI+   
Sbjct: 187 ESAIVRLQPYCDLPYPVQDEQLLGQIVTAAFGQRRKTLRNSLKKFINETGLEQLGIKPTE 246

Query: 260 RAENLSIEDFCRITNILTDNQ 280
           RAE LS+  F  I + +  NQ
Sbjct: 247 RAEQLSLSQFVDICHQVELNQ 267


>gi|194467627|ref|ZP_03073614.1| dimethyladenosine transferase [Lactobacillus reuteri 100-23]
 gi|194454663|gb|EDX43560.1| dimethyladenosine transferase [Lactobacillus reuteri 100-23]
          Length = 297

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 159/283 (56%), Gaps = 22/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y I  KK  GQNFL DLN+LK I E++   D   VIEIG G G LT+ L    A
Sbjct: 14  RAIMEKYGIHTKKSFGQNFLTDLNVLKNIVEAADITDNDNVIEIGPGIGALTEQLAQ-AA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
            +V+ +E DQ   P+LK++ S + N +++I  D L+ +      ++F + S PI+++ANL
Sbjct: 73  GEVLALEIDQDLIPVLKEVLSPYDN-VKVINQDVLQANLPELIKKEFKDPSRPIKVVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + +L N +++   P  W ++ ++ QKEV +R+TA+  +  YG L++   ++ +A 
Sbjct: 132 PYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYGALTLAIEYQMQAK 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLK 242
           + FD+S  VF PSP V S ++   P  NP+P      +K+    +  F  RRK+L  +L+
Sbjct: 189 IAFDVSRKVFVPSPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGCFAHRRKSLWNNLQ 248

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            + G++         +L Q  I   +R E L++E F  + N L
Sbjct: 249 SVIGKDPAVKEKMTAVLAQLDISPQIRPEKLTLEQFIELANAL 291


>gi|302669432|ref|YP_003829392.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus
           B316]
 gi|302393905|gb|ADL32810.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus
           B316]
          Length = 292

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/279 (35%), Positives = 153/279 (54%), Gaps = 18/279 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L+ + +  KK  GQNFL+D  +L  I  ++G      V+EIG G G+LTQ L    A
Sbjct: 11  KEVLAKFGMSAKKKFGQNFLIDSGVLDGIVSAAGVTKDDCVLEIGPGIGSLTQYLAE-SA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE---KFFNISSPIRIIANLPY 127
            KV+ +E D+   P+L D  S++ N + +I +D LKVD E   K +N  +PI+++ANLPY
Sbjct: 70  GKVVAVEIDKTLIPVLADTLSEYDN-VTVINEDVLKVDIEAIVKEYNGGNPIKVVANLPY 128

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++      ++  P  ES+T++ QKEV +R+     +  YG LS+  G+  KA+ +
Sbjct: 129 YITTPIIMKLF--ESGAPI-ESITVMVQKEVADRMAMGPGNKDYGSLSLAVGYYAKASEV 185

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL---- 241
            D+ P  F P P V S V+    +  P  C  +   + +I + +F +RRKTL  SL    
Sbjct: 186 MDVPPSSFIPQPGVGSAVVKLTRYSEPAVCVQDEKYMFEIIRTSFNQRRKTLSNSLANNP 245

Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                R   +  L + GI+   R E LS+E F R+++IL
Sbjct: 246 ALRVSRDQVQAALAEMGIDEKARGEILSLEQFARLSDIL 284


>gi|238650988|ref|YP_002916844.1| dimethyladenosine transferase [Rickettsia peacockii str. Rustic]
 gi|259494257|sp|C4K2J5|RSMA_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|238625086|gb|ACR47792.1| dimethyladenosine transferase [Rickettsia peacockii str. Rustic]
          Length = 301

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 155/304 (50%), Gaps = 41/304 (13%)

Query: 10  LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           L +I  H   +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L
Sbjct: 2   LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107
                 + VIE D++  P+L +I   +PN L II+ DALK+                   
Sbjct: 62  QKNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKK 120

Query: 108 ------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
                       D  +   I   + II+NLPY+IGT L+  W+          S+TL+ Q
Sbjct: 121 REAKPITNRRANDIGESKAIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 177

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           KEV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP+
Sbjct: 178 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPL 237

Query: 216 PCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRI 272
              L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI
Sbjct: 238 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRI 297

Query: 273 TNIL 276
             IL
Sbjct: 298 AEIL 301


>gi|56416752|ref|YP_153826.1| dimethyladenosine transferase [Anaplasma marginale str. St. Maries]
 gi|222475116|ref|YP_002563532.1| dimethyladenosine transferase (ksgA) [Anaplasma marginale str.
           Florida]
 gi|255003096|ref|ZP_05278060.1| dimethyladenosine transferase [Anaplasma marginale str. Puerto
           Rico]
 gi|255004222|ref|ZP_05279023.1| dimethyladenosine transferase [Anaplasma marginale str. Virginia]
 gi|62900476|sp|Q5PAV9|RSMA_ANAMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807856|sp|B9KIG4|RSMA_ANAMF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56387984|gb|AAV86571.1| dimethyladenosine transferase [Anaplasma marginale str. St. Maries]
 gi|222419253|gb|ACM49276.1| dimethyladenosine transferase (ksgA) [Anaplasma marginale str.
           Florida]
          Length = 270

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/261 (37%), Positives = 151/261 (57%), Gaps = 9/261 (3%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNF+LD ++ +KI   +GS++G  +IE+G G G +T+++L      ++ IEKD++ 
Sbjct: 10  KSLGQNFILDPSMAEKIVSYAGSIEGYNIIEVGPGFGTMTEIILRSKVASLLAIEKDRRL 69

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            P+ K +  ++PN    I+ D L+++ E    IS+P ++IANLPYNI   LL   +    
Sbjct: 70  SPMHKGLMQKYPN-YRYIEHDVLEINLETM--ISAPSKMIANLPYNISVILLLRMLK--- 123

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +   +E LTL+FQKEV ER+ A+  +  Y  LSVL         + D+ P  F P PKV 
Sbjct: 124 YIHNFEKLTLMFQKEVAERLVAKPGTKSYSILSVLVQLLCDVEKVKDLQPGAFSPPPKVC 183

Query: 203 STVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNL 259
           S+V++  P  N   P     + K+ ++AFG +RKT+R +L     E   LL +  I  ++
Sbjct: 184 SSVVNITPLGNLRFPVDYSYMLKMLKKAFGCKRKTVRNALGLPHQEFDALLAECRIPPSV 243

Query: 260 RAENLSIEDFCRITNILTDNQ 280
           RAENLS+E  C ++N L   Q
Sbjct: 244 RAENLSVEQLCAVSNFLQSRQ 264


>gi|268590578|ref|ZP_06124799.1| dimethyladenosine transferase [Providencia rettgeri DSM 1131]
 gi|291313966|gb|EFE54419.1| dimethyladenosine transferase [Providencia rettgeri DSM 1131]
          Length = 269

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/284 (35%), Positives = 156/284 (54%), Gaps = 20/284 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  I+  I ++   L G +++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLTDQFIIDSIVDAMNPLPGQSIVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPI 119
           +    +G+R  K+ V+E D+     L  +  Q  ++L IIQ DA+ VDF +       P+
Sbjct: 53  E---PVGSRIDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPL 108

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R+  NLPYNI T L+F+     T+      +  + QKEV  R+ A   S  +GRLSV+  
Sbjct: 109 RVFGNLPYNISTPLMFHLF---TFTNSISDMNFMLQKEVVNRLVAGPGSKAFGRLSVMAQ 165

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRRKTL 237
           +      + ++ P  F P+PKV S ++  IPH  NP P   ++ L +IT +AF +RRKT+
Sbjct: 166 YYCNVVPVLEVPPTAFTPAPKVDSAIVRLIPHRENPYPVKDIKFLSRITTQAFNQRRKTI 225

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           R SL  L     L + GI+ + RAEN+S+E +C++ N L++  +
Sbjct: 226 RNSLGDLFSVEELTELGIDLSTRAENISVEQYCKMANYLSNRSE 269


>gi|146309027|ref|YP_001189492.1| dimethyladenosine transferase [Pseudomonas mendocina ymp]
 gi|145577228|gb|ABP86760.1| dimethyladenosine transferase [Pseudomonas mendocina ymp]
          Length = 269

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/266 (35%), Positives = 147/266 (55%), Gaps = 7/266 (2%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y+   +K  GQNFL D  ++ +I  +  + DG  ++EIG G G +T+ LL  GA ++
Sbjct: 1   MSEYQHRARKRFGQNFLHDAGVIDRILRAIRAKDGERLLEIGPGQGAITEGLLGSGA-QL 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D    PIL+     +P R  + Q DALK DF +       +R++ NLPYNI T L
Sbjct: 60  DVIELDLDLIPILQGKFGDNP-RFRLNQGDALKFDFARLEAAPGSLRVVGNLPYNISTPL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+ +      P    +  + QKEV ER+ A      +GRLS++  +  +   +F++ P 
Sbjct: 119 IFHLLDN---APLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175

Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P PKV S ++  +PH + P P      L+++ +EAF +RRKTLR +LK+L     + 
Sbjct: 176 AFNPPPKVDSAIVRLVPHEVLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLPAEAIE 235

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
            AG++ +LR E L +  F R+ + L 
Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLADQLA 261


>gi|227544731|ref|ZP_03974780.1| dimethyladenosine transferase [Lactobacillus reuteri CF48-3A]
 gi|300909023|ref|ZP_07126486.1| dimethyladenosine transferase [Lactobacillus reuteri SD2112]
 gi|227185271|gb|EEI65342.1| dimethyladenosine transferase [Lactobacillus reuteri CF48-3A]
 gi|300894430|gb|EFK87788.1| dimethyladenosine transferase [Lactobacillus reuteri SD2112]
          Length = 297

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 158/283 (55%), Gaps = 22/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y I  KK  GQNFL DLN+LK I E++       VIEIG G G LT+ L    A
Sbjct: 14  RAIMEKYGIRTKKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPGIGALTEQLAQ-AA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
            +V+ +E DQ   P+LK++ S + N +++I  D L+ +      ++F + S PI+++ANL
Sbjct: 73  GEVLALEIDQDLIPVLKEVLSPYDN-VKVINQDVLQANLPELIKKEFKDPSRPIKVVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + +L N +++   P  W ++ ++ QKEV +R+TA+  +  YG L++   ++ +A 
Sbjct: 132 PYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYGELTLAIEYQMQAK 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLK 242
           + FD+S  VF PSP V S ++   P  NP+P      +K+    +  F  RRK+L  +L+
Sbjct: 189 IAFDVSRKVFVPSPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGCFAHRRKSLWNNLQ 248

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            + G++         +L Q  I   +R E L++E F  + N L
Sbjct: 249 SVIGKDPAVKEKMTAVLAQLDISPQIRPEKLTLEQFIELANAL 291


>gi|157828876|ref|YP_001495118.1| dimethyladenosine transferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|166221698|sp|A8GT85|RSMA_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157801357|gb|ABV76610.1| dimethyladenosine transferase [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 301

 Score =  165 bits (417), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 154/304 (50%), Gaps = 41/304 (13%)

Query: 10  LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           L +I  H   +++ P +  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L
Sbjct: 2   LPSIAKHAALHQVNPLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN------------ 114
                 + VIE D++  P+L +I   +PN L II+ DALK++                  
Sbjct: 62  QKNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKK 120

Query: 115 -------------------ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
                              I   + II+NLPY+IGT L+  W+          S+TL+ Q
Sbjct: 121 REAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 177

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           KEV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP+
Sbjct: 178 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPL 237

Query: 216 PCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRI 272
              L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI
Sbjct: 238 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLNINDNYRAENLAPQDYLRI 297

Query: 273 TNIL 276
             IL
Sbjct: 298 AEIL 301


>gi|239947018|ref|ZP_04698771.1| dimethyladenosine transferase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921294|gb|EER21318.1| dimethyladenosine transferase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 303

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 152/298 (51%), Gaps = 40/298 (13%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           + ++I P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L      + 
Sbjct: 10  ASHQINPLKKYGQNFIFDSSLCDKIVHASNLAENSRVLEIGPGTGGLTRSILQKKPESLT 69

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKV--------------------------- 107
           VIE D++  P+L +I   +PN L II+ DALK+                           
Sbjct: 70  VIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKEREAKPITN 128

Query: 108 ------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
                 D  +  +I   + II+NLPY+IGT L+  W+          ++TL+ QKEV ER
Sbjct: 129 RRATSNDVGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LINNMTLMLQKEVVER 185

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-E 220
           I A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP    L  
Sbjct: 186 ICAMPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPPSIALIN 245

Query: 221 SLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI  IL
Sbjct: 246 KVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLTPQDYLRIAEIL 303


>gi|153873941|ref|ZP_02002345.1| Ribosomal RNA adenine methylase transferase [Beggiatoa sp. PS]
 gi|152069594|gb|EDN67654.1| Ribosomal RNA adenine methylase transferase [Beggiatoa sp. PS]
          Length = 266

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 147/258 (56%), Gaps = 11/258 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQ+FL D  I+++I  +        ++EIG G G LT  LL  G   + VIE D+
Sbjct: 4   PRKRFGQHFLHDTGIIQRIITAIAPQKEQHLVEIGPGKGALTLPLLQQGF-ALDVIEFDR 62

Query: 81  QFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
                LK   +SSQ   +L I+  DALK DF++      P+RI  NLPYNI T LLF+ +
Sbjct: 63  DLVEWLKQNTLSSQ---QLNILSADALKFDFKQLVTDKQPLRIFGNLPYNISTSLLFHLV 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             +      + +T + QKEV +R+ A  ++ +YGRLSV+  +  +   +FD+ P  F P 
Sbjct: 120 HYNN---HIQDMTFMLQKEVVDRMIATPSTKNYGRLSVMLQYYCQINKLFDVDPEAFRPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV ST++  IPH++P    +  + L K+   AF ++RKTLR +LK +   + +  AGI+
Sbjct: 177 PKVNSTIVQLIPHVSPPVEVINDKQLSKMVALAFSQKRKTLRNTLKNVLDADAIQAAGID 236

Query: 257 TNLRAENLSIEDFCRITN 274
              RAE L++ +F R+ N
Sbjct: 237 PQARAETLTLAEFARLAN 254


>gi|165933603|ref|YP_001650392.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Rickettsia rickettsii str. Iowa]
 gi|165908690|gb|ABY72986.1| dimethyladenosine transferase [Rickettsia rickettsii str. Iowa]
          Length = 315

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 154/304 (50%), Gaps = 41/304 (13%)

Query: 10  LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           L +I  H   +++ P +  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L
Sbjct: 16  LPSIAKHAALHQVNPLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN------------ 114
                 + VIE D++  P+L +I   +PN L II+ DALK++                  
Sbjct: 76  QKNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKK 134

Query: 115 -------------------ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
                              I   + II+NLPY+IGT L+  W+          S+TL+ Q
Sbjct: 135 REAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 191

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           KEV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP+
Sbjct: 192 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPL 251

Query: 216 PCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRI 272
              L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI
Sbjct: 252 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLNINDNYRAENLAPQDYLRI 311

Query: 273 TNIL 276
             IL
Sbjct: 312 AEIL 315


>gi|327479273|gb|AEA82583.1| dimethyladenosine transferase [Pseudomonas stutzeri DSM 4166]
          Length = 264

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/267 (35%), Positives = 148/267 (55%), Gaps = 7/267 (2%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y+   +K  GQNFL D  ++ +I  +  +  G  ++EIG G G LT+ LL  GA  +
Sbjct: 1   MSDYQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLDSGA-HL 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            V+E D    PIL+   ++  N   + Q DALK DF +     + +RI+ NLPYNI T L
Sbjct: 60  DVVELDLDLIPILQSRFAERSN-FALHQGDALKFDFAQLSREPASLRIVGNLPYNISTPL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+ +           +  + QKEV ER+ AQ     +GRLS++  +  +   +F++ P 
Sbjct: 119 IFHLLE---HAGLIRDMHFMLQKEVVERLAAQPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P+PKV S ++  +PH   P P      L+++ +EAF +RRKTLR +LK L     + 
Sbjct: 176 AFNPAPKVDSAIVRLVPHETLPHPARDHRQLERVVREAFNQRRKTLRNTLKGLLDGEAIE 235

Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278
            AG++ +LR E L +  F R+++ LT+
Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLSDQLTE 262


>gi|15604515|ref|NP_221033.1| dimethyladenosine transferase [Rickettsia prowazekii str. Madrid E]
 gi|6225594|sp|O05952|RSMA_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|2073482|emb|CAA72482.1| dimethyladenosine transferase [Rickettsia prowazekii]
 gi|3861209|emb|CAA15109.1| DIMETHYLADENOSINE TRANSFERASE (ksgA) [Rickettsia prowazekii]
 gi|292572303|gb|ADE30218.1| Dimethyladenosine transferase [Rickettsia prowazekii Rp22]
          Length = 268

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/270 (37%), Positives = 151/270 (55%), Gaps = 12/270 (4%)

Query: 10  LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           L +I+ H   +KI P K  GQNF+ D ++  KI  +S  L+   VIEIG G G LT+ +L
Sbjct: 2   LPSIVKHATSHKINPLKKHGQNFIFDSSLCDKIIRASNVLENSNVIEIGPGIGGLTRSIL 61

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
               + + VIE D++  P+L +I   +PN L II+ D LK++      I   + +I+NLP
Sbjct: 62  QKNPKSLTVIEIDERCIPLLNEIQEYYPN-LNIIKQDVLKINLTDL--IYDKVTVISNLP 118

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y+IGT L+   +          ++TL+ QKEV ERI A  ++  YGRLSV+     K   
Sbjct: 119 YHIGTELVIRLLKEVK---LITNMTLMLQKEVVERICAIPSTKAYGRLSVICQILAKVEK 175

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL- 244
            F+++P  F+P PKV S ++  IP  NP    L   +++IT+  F  RRK ++ SL+ L 
Sbjct: 176 CFNVAPTAFYPHPKVYSAIVKIIPLENPPSIALINKVEQITKLVFAGRRKMIKSSLRNLI 235

Query: 245 -GGENLLHQAGIETNLRAENLSIEDFCRIT 273
                +L Q  I  N RAENL+ +D+ RI 
Sbjct: 236 PNIHEVLTQLKINCNDRAENLTPKDYLRIA 265


>gi|229587025|ref|YP_002845526.1| dimethyladenosine transferase [Rickettsia africae ESF-5]
 gi|259494256|sp|C3PPC3|RSMA_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|228022075|gb|ACP53783.1| Dimethyladenosine transferase [Rickettsia africae ESF-5]
          Length = 301

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 155/304 (50%), Gaps = 41/304 (13%)

Query: 10  LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           L +I  H   +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L
Sbjct: 2   LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRAIL 61

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107
                 + VIE D++  P+L +I   +PN L II+ DALK+                   
Sbjct: 62  QKNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKK 120

Query: 108 ------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
                       D  +  +I   + II+NLPY+IGT L+  W+          S+TL+ Q
Sbjct: 121 REAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAQ---LITSMTLMLQ 177

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-P 214
           KEV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  N P
Sbjct: 178 KEVVERICAIPSTKAYGRLSVICQLIVKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENSP 237

Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRI 272
               +  +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI
Sbjct: 238 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRI 297

Query: 273 TNIL 276
             IL
Sbjct: 298 AEIL 301


>gi|27151589|sp|Q92GV0|RSMA_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 301

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 154/304 (50%), Gaps = 41/304 (13%)

Query: 10  LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           L +I  H   +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L
Sbjct: 2   LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107
                 + VIE D +  P+L +I   +PN L II+ DALK+                   
Sbjct: 62  QKNPESLTVIETDARCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKK 120

Query: 108 ------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
                       D  +  +I   + II+NLPY+IGT L+  W+          S+TL+ Q
Sbjct: 121 REVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 177

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           KEV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP 
Sbjct: 178 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPP 237

Query: 216 PCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRI 272
              L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI
Sbjct: 238 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIYEVLTQLKINDNYRAENLAPQDYLRI 297

Query: 273 TNIL 276
             IL
Sbjct: 298 AEIL 301


>gi|157964820|ref|YP_001499644.1| dimethyladenosine transferase [Rickettsia massiliae MTU5]
 gi|157844596|gb|ABV85097.1| Dimethyladenosine transferase [Rickettsia massiliae MTU5]
          Length = 332

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 154/306 (50%), Gaps = 43/306 (14%)

Query: 10  LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           L +I  H   +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L
Sbjct: 31  LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 90

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107
                 + VIE D++  P+L +I   +PN L II+ DALK+                   
Sbjct: 91  QKNPESLTVIETDERCLPLLNEIKECYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKK 149

Query: 108 --------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
                         D  +  +I   + II+NLPY+IGT L+  W+          S+TL+
Sbjct: 150 LEVKPITNRRATSNDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLM 206

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213
            QKEV ERI A  ++  YGRLSV+     K    FD+ P  F+P PKV S ++  IP  N
Sbjct: 207 LQKEVVERICAMPSTKAYGRLSVICQLIAKVEKCFDVEPTAFYPPPKVYSAIVKLIPLEN 266

Query: 214 PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFC 270
           P    L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ 
Sbjct: 267 PPSIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYL 326

Query: 271 RITNIL 276
           RI  IL
Sbjct: 327 RIAEIL 332


>gi|258542093|ref|YP_003187526.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633171|dbj|BAH99146.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636228|dbj|BAI02197.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639283|dbj|BAI05245.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642337|dbj|BAI08292.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645392|dbj|BAI11340.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648447|dbj|BAI14388.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651500|dbj|BAI17434.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654491|dbj|BAI20418.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 214

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 118/205 (57%), Gaps = 6/205 (2%)

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  +E D +   ++++++  +PNRL++++ DALK D  +     +P +IIANLPYN+
Sbjct: 6   AESVTAVELDSRAVLVIQELAGFYPNRLKVVEADALKCDLTEL--CPAPRQIIANLPYNV 63

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T LL  W+        WE LTL+FQ EV ERI A  NS HYGRL+VL  W     ++  
Sbjct: 64  ATPLLIGWLRQGN---AWERLTLMFQLEVAERICAAPNSEHYGRLAVLAQWCADCAIVMK 120

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           + P  F P P V S V    PH   P P   ++++++T  AFG+RRK LR +LK L G  
Sbjct: 121 LPPGAFSPPPAVWSAVASITPHAQQPEPALFKAMERVTAAAFGQRRKMLRGALKGLNGYK 180

Query: 249 LLHQAGIETNLRAENLSIEDFCRIT 273
           LL  A I+   RAE L + +F R+ 
Sbjct: 181 LLAAADIDGTRRAETLDVAEFDRLA 205


>gi|146281120|ref|YP_001171273.1| dimethyladenosine transferase [Pseudomonas stutzeri A1501]
 gi|145569325|gb|ABP78431.1| dimethyladenosine transferase [Pseudomonas stutzeri A1501]
          Length = 264

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/267 (35%), Positives = 148/267 (55%), Gaps = 7/267 (2%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y+   +K  GQNFL D  ++ +I  +  +  G  ++EIG G G LT+ LL  GA ++
Sbjct: 1   MSDYQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLHSGA-QL 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            V+E D    PIL+   +   N   + Q DALK DF +     + +RI+ NLPYNI T L
Sbjct: 60  DVVELDLDLIPILQAKFAGREN-FNLNQGDALKFDFSRLSQEPASLRIVGNLPYNISTPL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+ +           +  + QKEV ER+ AQ     +GRLS++  +  +   +F++ P 
Sbjct: 119 IFHLLE---HAQLIRDMHFMLQKEVVERLAAQPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P+PKV S ++  +PH   P P      L+++ +EAF +RRKTLR +LK L     + 
Sbjct: 176 AFNPAPKVDSAIVRLVPHETLPHPARDHRQLERVVREAFNQRRKTLRNTLKGLLDAEAIE 235

Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278
            AG++ +LR E L +  F R+++ LT+
Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLSDQLTE 262


>gi|253689996|ref|YP_003019186.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259494254|sp|C6DEY6|RSMA_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|251756574|gb|ACT14650.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 272

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 150/288 (52%), Gaps = 32/288 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQF------FPILKDISSQHPNRLEIIQDDALKVDFEKFF- 113
                +G R  +  VIE D+         P LKD       +L IIQ DA+ +DF     
Sbjct: 53  A---PVGERMDRFTVIELDRDLAARLETHPTLKD-------KLTIIQQDAMTIDFAALAE 102

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  +GR
Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLFS---YTQSIRDMHFMLQKEVVNRLVAGPNSKAFGR 159

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           LSV+  +  +   + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF 
Sbjct: 160 LSVMAQYYCQVIPVLEVPPEAFKPAPKVDSAVVRLVPHTEIPYPVSDIRVLSRITTEAFN 219

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR SL  L   ++L + GI+   RAEN+S+E +CR+ N L+++
Sbjct: 220 QRRKTLRNSLGNLFTPDVLAELGIDATSRAENVSVEQYCRLANWLSEH 267


>gi|34581355|ref|ZP_00142835.1| dimethyladenosine transferase [Rickettsia sibirica 246]
 gi|28262740|gb|EAA26244.1| dimethyladenosine transferase [Rickettsia sibirica 246]
          Length = 301

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 155/304 (50%), Gaps = 41/304 (13%)

Query: 10  LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           L +I  H   +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L
Sbjct: 2   LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107
                 + VIE D++  P+L +I   +PN L II+ DALK+                   
Sbjct: 62  QKNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKK 120

Query: 108 ------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
                       D  +  +I   + II+NLPY+IGT L+  W+          S+TL+ Q
Sbjct: 121 REAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 177

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-P 214
           KEV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  N P
Sbjct: 178 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENSP 237

Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRI 272
               +  +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI
Sbjct: 238 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRI 297

Query: 273 TNIL 276
             IL
Sbjct: 298 AEIL 301


>gi|15892945|ref|NP_360659.1| dimethyladenosine transferase [Rickettsia conorii str. Malish 7]
 gi|15620139|gb|AAL03560.1| dimethyladenosine transferase [Rickettsia conorii str. Malish 7]
          Length = 315

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 154/304 (50%), Gaps = 41/304 (13%)

Query: 10  LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           L +I  H   +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L
Sbjct: 16  LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV------------------- 107
                 + VIE D +  P+L +I   +PN L II+ DALK+                   
Sbjct: 76  QKNPESLTVIETDARCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKK 134

Query: 108 ------------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
                       D  +  +I   + II+NLPY+IGT L+  W+          S+TL+ Q
Sbjct: 135 REVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQ 191

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           KEV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP 
Sbjct: 192 KEVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPP 251

Query: 216 PCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRI 272
              L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI
Sbjct: 252 SIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIYEVLTQLKINDNYRAENLAPQDYLRI 311

Query: 273 TNIL 276
             IL
Sbjct: 312 AEIL 315


>gi|88608711|ref|YP_506251.1| dimethyladenosine transferase [Neorickettsia sennetsu str.
           Miyayama]
 gi|119365038|sp|Q2GE45|RSMA_NEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|88600880|gb|ABD46348.1| dimethyladenosine transferase [Neorickettsia sennetsu str.
           Miyayama]
          Length = 262

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 140/258 (54%), Gaps = 10/258 (3%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ+F+ D  +L KI +++ S+ G  + EIGAG G L+  +L      +I +EKD++F
Sbjct: 6   KLLGQHFIYDREVLDKIIDAATSVKGKHIFEIGAGSGTLSAAILLREPASLISVEKDKRF 65

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              L  + +Q+ N    I  DAL +     F     + IIANLPYNI T LL  W++   
Sbjct: 66  SESLSSLMAQYQNYKYTI-GDALLIRLSSLFK-QEKVTIIANLPYNIATHLLLGWMNELE 123

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                  + L+FQKEV +RI AQ  S +YG LSVL     KA   F ++P VF P P+VT
Sbjct: 124 Q---VREMVLMFQKEVADRICAQPKSKNYGALSVLVQLECKAESQFALAPEVFTPPPRVT 180

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIET 257
           STV+   P  N  P     L+KI  E F +RRK +++SL R+  +     + L Q G   
Sbjct: 181 STVLKLTPLKNKWPRNKPVLEKILTEGFSQRRKMIKKSLSRIFKDSEALHSALAQVGASP 240

Query: 258 NLRAENLSIEDFCRITNI 275
            +R E L+ E  CR++ I
Sbjct: 241 TMRIEELNPEQLCRLSCI 258


>gi|152987663|ref|YP_001346131.1| dimethyladenosine transferase [Pseudomonas aeruginosa PA7]
 gi|150962821|gb|ABR84846.1| dimethyladenosine transferase [Pseudomonas aeruginosa PA7]
          Length = 268

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/266 (35%), Positives = 141/266 (53%), Gaps = 7/266 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + VI
Sbjct: 5   YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E DQ   P+LK      P R  + Q DALK DF         +R++ NLPYNI T L+F+
Sbjct: 64  ELDQDLIPLLKLKFGLEP-RFSLHQGDALKFDFASLVESDEKLRVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLE---HAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++   P   P     +   L+++ +EAF +RRKTLR +LK L     +  A 
Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAA 239

Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280
           ++  LR E L +  F R+ N L + Q
Sbjct: 240 VDPTLRPEQLDLAAFVRLANRLAELQ 265


>gi|149907524|ref|ZP_01896271.1| dimethyladenosine transferase [Moritella sp. PE36]
 gi|149809194|gb|EDM69123.1| dimethyladenosine transferase [Moritella sp. PE36]
          Length = 272

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/282 (36%), Positives = 155/282 (54%), Gaps = 21/282 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     KK  GQNFL D  ++ +I  S     G  +IEIG G G LT
Sbjct: 1   MNDKVH-----LGH---TAKKRFGQNFLHDAYVIGQIVASINPRKGENLIEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119
           + +      K+ V+E D+     L +   QHP    +LEI Q DA++ DF++    +  +
Sbjct: 53  EPVADC-LDKMTVVELDRD----LAERLEQHPVLSKKLEIHQADAMRFDFKQLIKPNMKM 107

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RI  NLPYNI T L+F+      +    + +  + QKEV +R+ A  N+  YGRL+V+T 
Sbjct: 108 RIFGNLPYNISTPLMFHLFE---FHEDIQDMHFMLQKEVVQRLAASHNTKSYGRLTVMTQ 164

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTL 237
           +  + T + ++ P  F P+PKV S V+   PH + P P   L+ L  + + AF +RRKT+
Sbjct: 165 YYCRVTPVLEVGPEAFRPAPKVDSAVVRLEPHTVLPHPAKSLKVLNHVVRNAFNQRRKTI 224

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           R SLK++   + +   GI  +LR ENL++E++  I N +TDN
Sbjct: 225 RNSLKKVISVDDIAALGINVSLRPENLTLENYVTIANFVTDN 266


>gi|148543450|ref|YP_001270820.1| dimethyladenosine transferase [Lactobacillus reuteri DSM 20016]
 gi|184152859|ref|YP_001841200.1| dimethyladenosine transferase [Lactobacillus reuteri JCM 1112]
 gi|227363600|ref|ZP_03847717.1| dimethyladenosine transferase [Lactobacillus reuteri MM2-3]
 gi|325681794|ref|ZP_08161313.1| dimethyladenosine transferase [Lactobacillus reuteri MM4-1A]
 gi|166987695|sp|A5VI09|RSMA_LACRD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732591|sp|B2G5I8|RSMA_LACRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|148530484|gb|ABQ82483.1| dimethyladenosine transferase [Lactobacillus reuteri DSM 20016]
 gi|183224203|dbj|BAG24720.1| dimethyladenosine transferase [Lactobacillus reuteri JCM 1112]
 gi|227071396|gb|EEI09702.1| dimethyladenosine transferase [Lactobacillus reuteri MM2-3]
 gi|324978885|gb|EGC15833.1| dimethyladenosine transferase [Lactobacillus reuteri MM4-1A]
          Length = 297

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 159/283 (56%), Gaps = 22/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y I  KK  GQNFL DLN+LK I E++       VIEIG G G LT+ L    A
Sbjct: 14  RAIMEKYGIRTKKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPGIGALTEQLAQ-AA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
            +V+ +E DQ   P+LK++ S + + +++I  D L+ +      ++F + S PI+++ANL
Sbjct: 73  GEVLALEIDQDLIPVLKEVLSPY-DDVKVINQDVLQANLPELIKKEFKDPSRPIKVVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + +L N +++   P  W ++ ++ QKEV +R+TA+  +  YG L++   ++ +A 
Sbjct: 132 PYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYGALTLAIEYQMQAK 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLK 242
           + FD+S  VF P+P V S ++   P  NP+P      +K+    +  F  RRK+L  +L+
Sbjct: 189 IAFDVSRKVFVPAPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGCFAHRRKSLWNNLQ 248

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            + G++         +L+Q  I   +R E L++E F  + N L
Sbjct: 249 SVIGKDPAAKEKMTAVLNQLDISPQIRPEKLTLEQFIELANAL 291


>gi|226327128|ref|ZP_03802646.1| hypothetical protein PROPEN_00993 [Proteus penneri ATCC 35198]
 gi|225204346|gb|EEG86700.1| hypothetical protein PROPEN_00993 [Proteus penneri ATCC 35198]
          Length = 272

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/291 (37%), Positives = 154/291 (52%), Gaps = 34/291 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  I++ I ES     G  ++EIG G G +T
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLTDSYIIESIVESIYPQPGQAIVEIGPGLGAIT 52

Query: 63  QMLLTLGAR--KVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF- 113
           +    +GAR  K+ V+E D+      +  P LKD       +L IIQ DA+ +DF +   
Sbjct: 53  E---PVGARMDKMTVVEIDRDLAARLEVHPTLKD-------KLTIIQQDAMTIDFAQLAK 102

Query: 114 NISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
               P+R+  NLPYNI T L+F+  S AD        +T + QKEV  R+ A   S  YG
Sbjct: 103 ERQQPLRVFGNLPYNISTPLMFHLFSFADAI----SDMTFMLQKEVVNRLVAGHGSKTYG 158

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAF 230
           RLSV+  +  +   + ++ P  F P+PKV S V+  IP+   P P   +  L +IT +AF
Sbjct: 159 RLSVMAQYYCQIIPVLEVPPTSFKPAPKVDSAVVRLIPYKEKPYPVTDIAMLSRITAQAF 218

Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            +RRKTLR SL  L     +    I+   RAEN+S+E +C++ N L+  QD
Sbjct: 219 NQRRKTLRNSLGGLLTAEDMIALDIDPTARAENISVEQYCKVANWLSQKQD 269


>gi|262371641|ref|ZP_06064920.1| dimethyladenosine transferase [Acinetobacter junii SH205]
 gi|262311666|gb|EEY92751.1| dimethyladenosine transferase [Acinetobacter junii SH205]
          Length = 270

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/255 (38%), Positives = 139/255 (54%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E D+ 
Sbjct: 17  RKRFGQNFLHDQRVIAKIVRSVNPRAGDNIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L      HP RL I++ DALK DF + F    P+R++ NLPYNI T LLF+ +   
Sbjct: 76  LAAGLPG-RVPHPERLTIVEADALKYDFTQLFQEGRPLRVVGNLPYNISTPLLFHLLEFG 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +RITA+ N+  YGRLSV+  +  K T +F++ P  F P PKV
Sbjct: 135 DK---VKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCKPTFLFEVPPGSFNPPPKV 191

Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS V    P+   PI    E +L ++    F +RRKTLR SLK +  E+   +AG++   
Sbjct: 192 TSAVFRLEPYETKPIIAKNEKALARLVGHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMA 251

Query: 260 RAENLSIEDFCRITN 274
           R E LS+ DF  +++
Sbjct: 252 RPETLSLADFVALSD 266


>gi|212711197|ref|ZP_03319325.1| hypothetical protein PROVALCAL_02269 [Providencia alcalifaciens DSM
           30120]
 gi|212686365|gb|EEB45893.1| hypothetical protein PROVALCAL_02269 [Providencia alcalifaciens DSM
           30120]
          Length = 269

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/281 (37%), Positives = 150/281 (53%), Gaps = 20/281 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  I+  I ++     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLTDQFIIDSIVDAMHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPI 119
           +    +G+R  K+ V+E D+     L  +  Q  ++L IIQ DA+ VDF +       PI
Sbjct: 53  E---PVGSRMDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPI 108

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R+  NLPYNI T L+F+     T+      +  + QKEV  R+ A   S  YGRLSV+  
Sbjct: 109 RVFGNLPYNISTPLMFHLF---TFTNQISDMNFMLQKEVVNRLVAGPGSKAYGRLSVMAQ 165

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRRKTL 237
           +      + ++ P  F P PKV S V+  IPH  NP P   ++ L +IT +AF +RRKT+
Sbjct: 166 YYCNVVPVLEVPPTAFAPPPKVDSAVVRLIPHKENPYPVKDIKVLSRITTQAFNQRRKTI 225

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           R SL  L     L + GI+   RAEN+S+E +C++ N L +
Sbjct: 226 RNSLGDLFSVEQLTELGIDPGTRAENISVEHYCKMANYLCN 266


>gi|56476032|ref|YP_157621.1| dimethyladenosine transferase [Aromatoleum aromaticum EbN1]
 gi|62900475|sp|Q5P7J1|RSMA_AROAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56312075|emb|CAI06720.1| dimethyladenosine transferase [Aromatoleum aromaticum EbN1]
          Length = 265

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/263 (36%), Positives = 146/263 (55%), Gaps = 21/263 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL D NI++KI ++   + G TV+EIG G G +T  L+  LG   V+ I++D 
Sbjct: 7   RKRFGQNFLSDPNIIRKIIDAIHPVPGETVVEIGPGLGAMTDPLVERLGHLHVVEIDRDL 66

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               I +      P RL I + DALK DF     + +P+R++ NLPYNI T LLF+    
Sbjct: 67  ----IARLHERYSPERLTIHEGDALKFDFA---TLGAPLRVVGNLPYNISTPLLFHLAE- 118

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             +      +T + QKEV  R+ A+  +  YGRLSV+  +R +   +FD+ P  F P+PK
Sbjct: 119 --FAARVRDMTFMLQKEVVMRMVAEPGTEDYGRLSVMLQYRFRMGRLFDVPPGAFRPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCCLES------LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           VTS+++  +    P+P    +      L+++   AFG+RRKTLR +L+    E      G
Sbjct: 177 VTSSIVRMV----PLPAEQRTAKDEALLERVVAAAFGQRRKTLRNTLREWLDEADFPALG 232

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           I+  LR E L++ D+  ITN + 
Sbjct: 233 IDPGLRGERLTVADYVAITNYIA 255


>gi|183597821|ref|ZP_02959314.1| hypothetical protein PROSTU_01151 [Providencia stuartii ATCC 25827]
 gi|188022577|gb|EDU60617.1| hypothetical protein PROSTU_01151 [Providencia stuartii ATCC 25827]
          Length = 269

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/280 (37%), Positives = 150/280 (53%), Gaps = 20/280 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  I+  I ++     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLTDQFIIDSIVDAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPI 119
           +    +G+R  K+ V+E D+     L  +  Q  ++L IIQ DA+ VDF +       P+
Sbjct: 53  E---PVGSRMDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPL 108

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R+  NLPYNI T L+F+     T+      +  + QKEV  R+ A   S  YGRLSV+  
Sbjct: 109 RVFGNLPYNISTPLMFHLF---TFTNSIADMNFMLQKEVVNRLVAGPGSKAYGRLSVMAQ 165

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTL 237
           +  +   + ++ P  F P PKV S V+  IPH  NP P   ++ L +IT +AF +RRKTL
Sbjct: 166 YYCQVVPVLEVPPTAFAPPPKVDSAVVRLIPHRENPYPLRDIKMLSRITTQAFNQRRKTL 225

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           R SL  L     L + GI+   RAEN+S+E +C++ N L 
Sbjct: 226 RNSLGDLLNVEQLTELGIDPGTRAENISVEAYCKMANYLA 265


>gi|197286180|ref|YP_002152052.1| dimethyladenosine transferase [Proteus mirabilis HI4320]
 gi|227357300|ref|ZP_03841657.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Proteus mirabilis ATCC
           29906]
 gi|226732611|sp|B4F2I2|RSMA_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|194683667|emb|CAR44618.1| dimethyladenosine transferase [Proteus mirabilis HI4320]
 gi|227162563|gb|EEI47552.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 272

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/293 (37%), Positives = 153/293 (52%), Gaps = 34/293 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  I++ I ES     G  VIEIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLTDSYIIESIVESIYPQPGEAVIEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF- 113
           +    +G R  K+ V+E D+      +  P LKD       +L IIQ DA+ +DF +   
Sbjct: 53  E---PVGERMDKMTVVEIDRDLAARLEVHPTLKD-------KLTIIQQDAMTIDFAQLAK 102

Query: 114 NISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
               P+R+  NLPYNI T L+F+  S AD        +T + QKEV  R+ A   S  YG
Sbjct: 103 ERQQPLRVFGNLPYNISTPLMFHLFSFADAI----SDMTFMLQKEVVNRLVASHGSKTYG 158

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAF 230
           RLSV+  +  +   + ++ P  F P+PKV S V+  IP+   P P   +  L +IT +AF
Sbjct: 159 RLSVMAQYHCQVIPIIEVPPSSFKPAPKVDSAVVRLIPYKEKPYPVTDIAMLSRITSQAF 218

Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            +RRKTLR SL  L     +    I+   RAEN+S+E +C++ N L+  Q  A
Sbjct: 219 NQRRKTLRNSLGGLLTAEDMLALDIDPTARAENISVEQYCKVANWLSSQQQHA 271


>gi|238918639|ref|YP_002932153.1| dimethyladenosine transferase [Edwardsiella ictaluri 93-146]
 gi|238868207|gb|ACR67918.1| dimethyladenosine transferase, putative [Edwardsiella ictaluri
           93-146]
          Length = 267

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/270 (37%), Positives = 143/270 (52%), Gaps = 14/270 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   + +K  GQNFL D  ++  I  +   L G  V+EIG G G LT+ +      K+ V
Sbjct: 2   HQGHLARKRFGQNFLTDQFVIDSIVSAINPLPGQAVVEIGPGLGALTEPVAD-RMDKMTV 60

Query: 76  IEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGT 131
           +E D+     L +  S HP    +L I Q DA+ VDF E       P+R+  NLPYNI T
Sbjct: 61  VELDRD----LAERLSTHPFISRKLTIRQQDAMTVDFSEMAREAGQPLRVFGNLPYNIST 116

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L+F+  S   +      +  + QKEV  R+ A  +S  YGRLSV+  +  +   + ++ 
Sbjct: 117 PLMFHLFS---YASAISDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVVPVLEVP 173

Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           P  F P+PKV S V+  IPH   P P   +  L +IT EAF +RRKT+R SL  L   + 
Sbjct: 174 PSAFRPAPKVDSAVVRLIPHRELPYPVSDVRVLSRITTEAFNQRRKTIRNSLGHLFSADQ 233

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L   GI+   RAE LS+ D+CR+ N L ++
Sbjct: 234 LSALGIDPARRAETLSVADYCRLANWLCEH 263


>gi|157368969|ref|YP_001476958.1| dimethyladenosine transferase [Serratia proteamaculans 568]
 gi|166987697|sp|A8G9P0|RSMA_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157320733|gb|ABV39830.1| dimethyladenosine transferase [Serratia proteamaculans 568]
          Length = 272

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/285 (37%), Positives = 153/285 (53%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNNK H       H+    +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNKVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +GAR  ++ VIE D+     L +    HP   ++L I Q DA+ V+F E      
Sbjct: 53  E---PVGARMDRMTVIELDRDLAARLAN----HPQLKDKLTIHQQDAMTVNFAEMAEQAG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTQAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P+PKV S V+  +PHL NP P   +  L +IT +AF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPTSFTPAPKVDSAVVRLVPHLVNPNPVGDVRMLSRITTQAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+ N
Sbjct: 223 KTVRNSLGDLFTPEQLTELGIDPILRAENISVAQYCKLANWLSAN 267


>gi|107099578|ref|ZP_01363496.1| hypothetical protein PaerPA_01000591 [Pseudomonas aeruginosa PACS2]
 gi|254243686|ref|ZP_04937008.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           2192]
 gi|126197064|gb|EAZ61127.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           2192]
          Length = 268

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 142/264 (53%), Gaps = 7/264 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + VI
Sbjct: 5   YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E DQ   P+LK +     +R  + Q DALK DF         +R++ NLPYNI T L+F+
Sbjct: 64  ELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +    + P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLE---YAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++   P   P     +   L+++ +EAF +RRKTLR +LK L     +  A 
Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAE 239

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           ++  LR E L +  F R+ N L +
Sbjct: 240 VDPTLRPEQLDLAAFVRLANRLAE 263


>gi|254455962|ref|ZP_05069391.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082964|gb|EDZ60390.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 261

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 150/263 (57%), Gaps = 19/263 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK +GQNFL+D NIL+KI       D  T++E+G G GNLT  +L    +K+ V+EK
Sbjct: 2   IKAKKSLGQNFLVDRNILEKITNIIQITDE-TILEVGPGTGNLTSFILKKKPKKIFVVEK 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++   +   +     ++L II DD LK++    F   S + +  NLPYNI T +L  WI
Sbjct: 61  DEK---LANHLEETFKDQLTIINDDILKINESSLF--ESKVTVFGNLPYNISTEILSKWI 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +  +   ++ +L L+FQKEV +RI A+ ++ +YGRLS+++ W+     + DI P  F P 
Sbjct: 116 TNSSKDLWFNNLILMFQKEVADRIIAKFDTSNYGRLSIISNWKLNVEKICDIKPDCFSPK 175

Query: 199 PKVTSTVIHFIPH------LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLL 250
           PK+ S+++ F P        NP     ++L+K+T+  F  RRK +++   +L  G + +L
Sbjct: 176 PKIDSSLLFFSPKKDFFKIKNP-----KNLEKVTRVFFNHRRKMIKKPFNQLFNGNQKVL 230

Query: 251 HQAGIETNLRAENLSIEDFCRIT 273
            +  I  NLR +NL    + ++T
Sbjct: 231 DELNINLNLRPQNLDFNTYYKLT 253


>gi|270263922|ref|ZP_06192190.1| dimethyladenosine transferase [Serratia odorifera 4Rx13]
 gi|270042115|gb|EFA15211.1| dimethyladenosine transferase [Serratia odorifera 4Rx13]
          Length = 272

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/285 (36%), Positives = 153/285 (53%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNNK H       H+    +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNKVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +GAR  ++ VIE D+     L +    HP   ++L I Q DA+ V+F E      
Sbjct: 53  E---PVGARMDRMTVIELDRDLAARLAN----HPQLKDKLTIHQQDAMTVNFAEMAEQAG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTQAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P+PKV S V+  +PH +NP P   +  L +IT +AF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPTSFTPAPKVDSAVVRLVPHQVNPNPVGDVRMLSRITTQAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L     L + G++  LRAEN+S+  +C++ N L+ N
Sbjct: 223 KTVRNSLGDLFTPEQLTELGVDPTLRAENISVAQYCKLANWLSAN 267


>gi|242238054|ref|YP_002986235.1| dimethyladenosine transferase [Dickeya dadantii Ech703]
 gi|242130111|gb|ACS84413.1| dimethyladenosine transferase [Dickeya dadantii Ech703]
          Length = 272

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 150/288 (52%), Gaps = 32/288 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIYPQSGQALVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQF------FPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
              + +G R  +  V+E D+         P LKD       +L IIQ DA+ VDF     
Sbjct: 53  ---VPVGERIDRFTVVELDRDLAARLETHPTLKD-------KLTIIQQDAMTVDFTALAQ 102

Query: 115 -ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGR
Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLFS---YTHSIRDMHFMLQKEVVNRLVAGPNSKAYGR 159

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFG 231
           LSV+  +  +   + ++ P  F P+PKV S V+  +PH  +P P      L +IT EAF 
Sbjct: 160 LSVMAQYYCQVIPVLEVPPSAFKPAPKVDSAVVRLVPHTTSPYPTVDTRMLGRITTEAFN 219

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR SL  L     L + GI+ N RAEN+++E +C++ N LT++
Sbjct: 220 QRRKTLRNSLGNLFTPEQLTEQGIDPNARAENVTVEQYCQLANWLTEH 267


>gi|192361991|ref|YP_001981369.1| dimethyladenosine transferase [Cellvibrio japonicus Ueda107]
 gi|190688156|gb|ACE85834.1| dimethyladenosine transferase [Cellvibrio japonicus Ueda107]
          Length = 287

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/259 (35%), Positives = 143/259 (55%), Gaps = 7/259 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL+D  I++ I  +        V+EIG G G +T+ LL      + VIE D+ 
Sbjct: 20  RKRFGQNFLVDHGIIRDIVRAVHPQKTDVVVEIGPGKGAITE-LLADACDNLSVIELDRD 78

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P LK    +HPN  ++ Q DAL+ DF +      P+RI+ NLPYNI T L+F+ +   
Sbjct: 79  LVPWLKVKFEKHPN-FQLFQADALRFDFRQLIKPGQPLRIVGNLPYNISTPLIFHLLGYA 137

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +R+ A+  S  YGRL ++  +      +F++ P  F P PKV
Sbjct: 138 NQ---VKDMHFMLQKEVVKRMAAEPGSGAYGRLGIMVQYFCAVENLFEVPPTSFDPPPKV 194

Query: 202 TSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++  +PH  L  +   L++L+ +   AF +RRKTLR SLK L     L    ++ NL
Sbjct: 195 DSAIVRLVPHQQLPYLANNLKTLETLVNVAFQQRRKTLRNSLKSLLSMAQLDSLPVDLNL 254

Query: 260 RAENLSIEDFCRITNILTD 278
           R EN+S+ ++ +I+N+L D
Sbjct: 255 RPENISLAEYVQISNLLGD 273


>gi|269137958|ref|YP_003294658.1| dimethyladenosine transferase (rRNA methylation) [Edwardsiella
           tarda EIB202]
 gi|267983618|gb|ACY83447.1| dimethyladenosine transferase (rRNA methylation) [Edwardsiella
           tarda EIB202]
 gi|304558006|gb|ADM40670.1| Dimethyladenosine transferase [Edwardsiella tarda FL6-60]
          Length = 267

 Score =  162 bits (409), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 102/270 (37%), Positives = 143/270 (52%), Gaps = 14/270 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   + +K  GQNFL D  ++  I  +   L G  V+EIG G G LT+ +      K+ V
Sbjct: 2   HQGHLARKRFGQNFLTDQFVIDSIVSAINPLPGQAVVEIGPGLGALTEPVAD-RMDKMTV 60

Query: 76  IEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGT 131
           IE D+     L +  S HP    +L I Q DA+ VDF E       P+R+  NLPYNI T
Sbjct: 61  IELDRD----LAERLSTHPFISRKLTIRQQDAMTVDFSEMAREAGQPLRVFGNLPYNIST 116

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L+F+  S   +      +  + QKEV  R+ A  +S  YGRLSV+  +  +   + ++ 
Sbjct: 117 PLMFHLFS---YASAIGDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVIPVLEVP 173

Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           P  F P+PKV S V+  IPH   P P   +  L +IT EAF +RRKT+R SL  L   + 
Sbjct: 174 PSAFRPAPKVDSAVVRLIPHRELPYPVSDVRVLSRITTEAFNQRRKTVRNSLGHLFSADQ 233

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L   GI+   RAE LS+ D+CR+ N L ++
Sbjct: 234 LSALGIDPARRAETLSVADYCRLANWLCEH 263


>gi|226954480|ref|ZP_03824944.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|294651496|ref|ZP_06728809.1| dimethyladenosine transferase [Acinetobacter haemolyticus ATCC
           19194]
 gi|226834829|gb|EEH67212.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|292822646|gb|EFF81536.1| dimethyladenosine transferase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 270

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 97/255 (38%), Positives = 138/255 (54%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E D+ 
Sbjct: 17  RKRFGQNFLHDQRVIAKIVRSVNPRAGENIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L      HP RL II+ DALK DF + F    P+R++ NLPYNI T LLF+ +   
Sbjct: 76  LAAGLPG-RVPHPERLTIIEADALKYDFTQLFQDGRPLRVVGNLPYNISTPLLFHLLEFG 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +RITA  N+  YGRLSV+  +  K T +F++ P  F P PKV
Sbjct: 135 DK---VKDMHFMLQKEVVDRITAVPNTKEYGRLSVMIQYYCKPTFLFEVPPGSFNPPPKV 191

Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS V    P+   PI    E +L ++    F +RRKTLR SLK +  ++   +AG++   
Sbjct: 192 TSAVFRLEPYETKPIVAKDEKALARLVSHVFTQRRKTLRNSLKGMLADDGFEKAGVDPMA 251

Query: 260 RAENLSIEDFCRITN 274
           R E LS+ DF  +++
Sbjct: 252 RPETLSLADFVALSD 266


>gi|157804052|ref|YP_001492601.1| dimethyladenosine transferase [Rickettsia canadensis str. McKiel]
 gi|166221697|sp|A8EZN3|RSMA_RICCK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157785315|gb|ABV73816.1| dimethyladenosine transferase [Rickettsia canadensis str. McKiel]
          Length = 270

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 142/260 (54%), Gaps = 9/260 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           + I P K  GQNF+ D ++  KI   S   +   V+EIG G G LT+ +L      + VI
Sbjct: 12  HHINPLKKHGQNFIFDSSLCHKIVRVSNLEENSRVLEIGPGSGGLTRSILQKNPESLTVI 71

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D++F P+L +I   +PN L II+ DALK++          + II+NLPY+IGT L+  
Sbjct: 72  ETDERFIPLLNEIKEYYPN-LNIIKQDALKINLTDLG--YDKVTIISNLPYHIGTELVIR 128

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           W+          S+TL+ QKE+ ERI A  ++  YGRLSV+     K    F+++P  F+
Sbjct: 129 WLKEAR---LITSMTLMLQKELVERICAMPSTKAYGRLSVICQLIAKVEKCFEVAPTAFY 185

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQA 253
           P PKV S ++   P  N P    +  +++IT+ AF  RRK ++ SLK        +L Q 
Sbjct: 186 PPPKVYSAIVKLTPLENLPSIALITKVEQITKLAFAGRRKMIKSSLKNFVPVKNEVLTQL 245

Query: 254 GIETNLRAENLSIEDFCRIT 273
            I  N RAENL+ +D+  I 
Sbjct: 246 NINDNYRAENLTPQDYLMIA 265


>gi|88810560|ref|ZP_01125817.1| dimethyladenosine transferase [Nitrococcus mobilis Nb-231]
 gi|88792190|gb|EAR23300.1| dimethyladenosine transferase [Nitrococcus mobilis Nb-231]
          Length = 271

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 139/259 (53%), Gaps = 8/259 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL D +IL ++ +S     G   IEIG+G G LT+ LL   AR ++ IE D+ 
Sbjct: 7   RRRFGQNFLHDPSILHRMVDSIDPRPGQCCIEIGSGLGALTRPLLER-ARALVAIELDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+         LEIIQ DAL +DF  F      +R+I NLPYNI T LLF+     
Sbjct: 66  LIEPLRRCCDGA-GELEIIQADALGLDFACFRQGPEKLRVIGNLPYNIATPLLFHVTG-- 122

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +    E    L QKEV ER+ A      YGRLSV+  +R +   +FD+ P+ F P PKV
Sbjct: 123 -FAEHLEDAHFLLQKEVVERMAAGAGQASYGRLSVMIQYRCRVEPLFDVLPNAFRPVPKV 181

Query: 202 TSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           TS+ +   P   P     +    L ++   AFG+RRKTLR +L+ +  E  +  AGIE +
Sbjct: 182 TSSWVRLTPLSRPPRGTWDDEPRLAEVVARAFGQRRKTLRNALRGMISEQQIKAAGIEPS 241

Query: 259 LRAENLSIEDFCRITNILT 277
            RAE + ++ + R+  ++ 
Sbjct: 242 ARAETIDLDHYLRLAEVMA 260


>gi|156124974|gb|ABU50801.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Acinetobacter venetianus]
          Length = 270

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 97/255 (38%), Positives = 138/255 (54%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E D+ 
Sbjct: 17  RKRFGQNFLHDQRVIAKIVRSVNPRAGENIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L      HP RL I++ DALK DF + F    P+R++ NLPYNI T LLF+ +   
Sbjct: 76  LAAGLPG-RVPHPERLTIVEADALKYDFTQLFQEGRPLRVVGNLPYNISTPLLFHLLEFG 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +RITA  N+  YGRLSV+  +  K T +F++ P  F P PKV
Sbjct: 135 DK---VKDMHFMLQKEVVDRITATPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNPPPKV 191

Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS V    P+   PI    E +L ++    F +RRKTLR SLK +  E+   +AG++   
Sbjct: 192 TSAVFRLEPYETKPIVAKDEKALARLVGHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMA 251

Query: 260 RAENLSIEDFCRITN 274
           R E LS+ DF  +++
Sbjct: 252 RPETLSLADFVALSD 266


>gi|240949660|ref|ZP_04753995.1| dimethyladenosine transferase [Actinobacillus minor NM305]
 gi|240295918|gb|EER46594.1| dimethyladenosine transferase [Actinobacillus minor NM305]
          Length = 289

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/269 (35%), Positives = 149/269 (55%), Gaps = 20/269 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D+N++  I  +    +G  ++EIG G G LT+ +  L   K+ V+E D+ 
Sbjct: 15  RKRFGQNFLHDMNVIHGIVSAINPRNGQYLLEIGPGLGALTEPVAEL-VDKLTVVELDRD 73

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRL 133
               L+     HP   ++L II+ DAL+ +F ++F       +  +R+  NLPYNI T L
Sbjct: 74  LAERLR----HHPFLNHKLTIIEQDALRFNFREYFESLDLKENEGVRVFGNLPYNISTPL 129

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+      +    + +  + QKEV +R+ A  NS  YGRL+++  +  +   + ++ P 
Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLEVPPT 186

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLL 250
            F P+PKV S V+  +PH   IP  ++    L ++T +AF +RRKTLR +L  L     L
Sbjct: 187 AFKPAPKVDSAVVRLVPH-KQIPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSAEQL 245

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
              GI+ N RAENLSI D+ R+ N L DN
Sbjct: 246 EALGIDLNARAENLSIADYARLANWLCDN 274


>gi|262369199|ref|ZP_06062527.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase
           [Acinetobacter johnsonii SH046]
 gi|262315267|gb|EEY96306.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase
           [Acinetobacter johnsonii SH046]
          Length = 270

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/255 (38%), Positives = 136/255 (53%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E D+ 
Sbjct: 17  RKRFGQNFLHDQRVIAKIVRSVAPRSGDNIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L      HP RL II+ DALK DF   F    P+R++ NLPYNI T LLF+ +   
Sbjct: 76  LAAGLPG-RVPHPERLTIIETDALKYDFTNLFEDGRPLRVVGNLPYNISTPLLFHLLEFG 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +RITA  NS  YGRLSV+  +  K T +F++ P  F P PKV
Sbjct: 135 DK---VKDMHFMLQKEVVDRITASPNSKEYGRLSVMIQYFCKPTFLFEVPPGSFNPPPKV 191

Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS V    P+ + PI    E +L ++    F +RRKTLR SLK +  E+   QAG++   
Sbjct: 192 TSAVFRLEPYAVKPIVAKNEKALARLVSHVFTQRRKTLRNSLKGMLVEDGFEQAGVDPMA 251

Query: 260 RAENLSIEDFCRITN 274
           R E L++  F  + +
Sbjct: 252 RPETLTLAQFVALAD 266


>gi|123440993|ref|YP_001004982.1| dimethyladenosine transferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166221715|sp|A1JJF4|RSMA_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122087954|emb|CAL10742.1| dimethyladenosine transferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 272

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/283 (36%), Positives = 155/283 (54%), Gaps = 26/283 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS 117
           +    + AR   + VIE D+     L D  + HP   ++L I Q+DA+K++F +   ++ 
Sbjct: 53  E---PVAARMDHMTVIELDRD----LADRLASHPQLKDKLTIHQEDAMKINFSELAELAG 105

Query: 118 -PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTSAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P+PKV S V+  IPH+N P P   +  L +IT +AF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 223 KTVRNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265


>gi|330505265|ref|YP_004382134.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01]
 gi|328919551|gb|AEB60382.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01]
          Length = 269

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 146/266 (54%), Gaps = 7/266 (2%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y+   +K  GQNFL D  ++ +I  +  + +   ++EIG G G +T+ LL  GA ++
Sbjct: 1   MSEYQHRARKRFGQNFLHDAGVIDRILRAIRAKEDERLLEIGPGQGAITEGLLGSGA-QL 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D    PIL++    +P R  + Q DALK DF +       +R++ NLPYNI T L
Sbjct: 60  DVIELDLDLIPILQNKFGANP-RFRLNQGDALKFDFARLEAAPRSLRVVGNLPYNISTPL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+ +      P    +  + QKEV ER+ A      +GRLS++  +  +   +F++ P 
Sbjct: 119 IFHLLDN---APLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P PKV S ++  +PH   P P      L+++ +EAF +RRKTLR +LK+L     + 
Sbjct: 176 AFNPPPKVDSAIVRLVPHETLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLPAEAIE 235

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
            AG++ +LR E L +  F R+ + L 
Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLADQLA 261


>gi|85711795|ref|ZP_01042851.1| dimethyladenosine transferase [Idiomarina baltica OS145]
 gi|85694410|gb|EAQ32352.1| dimethyladenosine transferase [Idiomarina baltica OS145]
          Length = 269

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/275 (34%), Positives = 155/275 (56%), Gaps = 16/275 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT L H     +K  GQNFL D +I++ I ++     G  ++EIG G   LT+ +     
Sbjct: 3   KTHLGHRA---RKRFGQNFLNDEHIIESIVDAIHPQPGENLVEIGPGLAALTEPVAE-RC 58

Query: 71  RKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +++ V+E D+     L D    HP     L++I+ DA+K+DF+ F +    +R+  NLPY
Sbjct: 59  QQLRVVELDRD----LADRLETHPFLSQHLDVIRGDAMKIDFKAFASPEQKLRVFGNLPY 114

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI T L+F+ +    +  + E +  + QKEV +R+TA+  S  YGR++V    R +   +
Sbjct: 115 NISTPLIFHLLK---FSDYVEDMHFMLQKEVVDRLTAEPGSKTYGRITVSVQQRCEVQKV 171

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P PKV S V+   P++ +P P   ++ L+ +   AF +RRKT++ +LK+L 
Sbjct: 172 LDVPPEAFTPPPKVESAVVRLRPYVKSPTPVKDVQQLQSLCLTAFNQRRKTIKNNLKKLI 231

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +  L   GI  + R E L++ D+CRI++ LTDNQ
Sbjct: 232 DDTQLEALGINPSARPETLTVADYCRISDWLTDNQ 266


>gi|254429167|ref|ZP_05042874.1| dimethyladenosine transferase [Alcanivorax sp. DG881]
 gi|196195336|gb|EDX90295.1| dimethyladenosine transferase [Alcanivorax sp. DG881]
          Length = 270

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 144/263 (54%), Gaps = 10/263 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+FL D N++ ++  + G   G T++EIG G G LT  LL      + V+E D+ 
Sbjct: 7   RKRFGQHFLHDRNLVDRMIRTLGLQAGDTLVEIGPGRGALTYPLLE-EIPHLHVVELDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
              +L+  ++  P+RL I + DAL+ DF        P+R+I NLPYNI T L+F+ ++ A
Sbjct: 66  LIALLRQENT--PDRLSIHESDALRFDFRALKPADKPLRVIGNLPYNISTPLIFHLLAQA 123

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +T + QKEV ER+TA   +  +GRLS++  +  +A  +F + P  F P P+
Sbjct: 124 DAI----SDMTFMLQKEVVERLTASPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSPPPR 179

Query: 201 VTSTVIHFIPHLNPI-PCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  IPH +P  P   E  L+K+  +AF +RRK +R  LK           GI+  
Sbjct: 180 VDSAVVRLIPHASPPHPADDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFEALGIDAG 239

Query: 259 LRAENLSIEDFCRITNILTDNQD 281
           LR + LS+ D+  + NI   N D
Sbjct: 240 LRPDQLSVADYVALANISRPNAD 262


>gi|53805073|ref|YP_113120.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath]
 gi|62900497|sp|Q60B77|RSMA_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|53758834|gb|AAU93125.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath]
          Length = 257

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/258 (36%), Positives = 139/258 (53%), Gaps = 7/258 (2%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +P+K  GQNFL D  ++++I  + G      ++EIG G G LT+ LL  GA  +  IE D
Sbjct: 4   VPRKRFGQNFLRDPGVIQEIVAAVGPAPSDRLVEIGPGEGVLTRELLQSGA-CLEAIELD 62

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +     LK   +    RL I + DA+K D  +       +R++ NLPYNI T LLF+   
Sbjct: 63  RDLVAALKRRFAG-VGRLRIHEGDAMKFDL-RTIATGERLRVVGNLPYNISTPLLFHLFD 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                   E +  + QKEV +R+ A     HYGRLSV+     +A  +FD+ P  F P P
Sbjct: 121 ---QIDVIEDMHFMLQKEVVDRLCAGAGDDHYGRLSVMAALYCQAQHLFDVGPECFHPQP 177

Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S V+  +PH + P    ++ +  +   AFG+RRKTLR +LK L  E  + +AGI+  
Sbjct: 178 KVVSAVVRLVPHAVPPDAGMVKQVSAVVVAAFGQRRKTLRNALKGLLDETAMVRAGIDPG 237

Query: 259 LRAENLSIEDFCRITNIL 276
            RAE LS+ D+  ++  L
Sbjct: 238 ARAEELSLADYVGLSRQL 255


>gi|227114236|ref|ZP_03827892.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 272

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 150/288 (52%), Gaps = 32/288 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDHFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQF------FPILKDISSQHPNRLEIIQDDALKVDFEKFF- 113
                +G R  +  VIE D+         P LKD       +L IIQ DA+ +DF     
Sbjct: 53  A---PVGERMDRFTVIELDRDLAARLETHPTLKD-------KLTIIQQDAMTIDFAALAE 102

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+R+  NLPYNI T L+F+     T+      +  + QKEV  R+ A  NS  +GR
Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGR 159

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           LSV+  +  +   + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF 
Sbjct: 160 LSVMAQYYCQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAEIPYPVSDIRVLSRITTEAFN 219

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR SL  L    +L + GI+ + RAEN+++E +CR+ N L+++
Sbjct: 220 QRRKTLRNSLGNLFTPEILTELGIDVSSRAENVTVEQYCRLANWLSEH 267


>gi|255319639|ref|ZP_05360849.1| dimethyladenosine transferase [Acinetobacter radioresistens SK82]
 gi|262379013|ref|ZP_06072170.1| dimethyladenosine transferase [Acinetobacter radioresistens SH164]
 gi|255303323|gb|EET82530.1| dimethyladenosine transferase [Acinetobacter radioresistens SK82]
 gi|262300298|gb|EEY88210.1| dimethyladenosine transferase [Acinetobacter radioresistens SH164]
          Length = 270

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/255 (37%), Positives = 139/255 (54%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  +++KI  S     G  ++EIG G   LT  L+      + V+E D+ 
Sbjct: 17  RKRFGQNFLHDQRVIEKIVRSVNPQPGDNIVEIGPGLAALTAPLIA-ECEALTVVELDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L      +P RL II+ DALK DF + F    P+R + NLPYNI T LLF+ +   
Sbjct: 76  LAAGLPG-RVPYPERLTIIESDALKYDFSQLFKEGQPLRAVGNLPYNISTPLLFHLLEFG 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +RITA+ N+  YGRLSV+  +  K T +F++ P  F P PKV
Sbjct: 135 DK---VKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCKPTYLFEVPPGSFNPPPKV 191

Query: 202 TSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS V    P+ + PI    E +L ++    F +RRKTLR SLK +  EN   +AG+    
Sbjct: 192 TSAVFRLEPYKDKPIVAQNEKALARLVSHVFTQRRKTLRNSLKGMLAENGFEKAGVNPMA 251

Query: 260 RAENLSIEDFCRITN 274
           R E L++ +F  +++
Sbjct: 252 RPETLTLAEFVALSD 266


>gi|121997814|ref|YP_001002601.1| dimethyladenosine transferase [Halorhodospira halophila SL1]
 gi|166221671|sp|A1WVT7|RSMA_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|121589219|gb|ABM61799.1| dimethyladenosine transferase [Halorhodospira halophila SL1]
          Length = 265

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/256 (35%), Positives = 142/256 (55%), Gaps = 13/256 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79
           P+K  GQNFL D  +++++  +    +G T++EIG G G LT+ LL  LG   +  +E D
Sbjct: 5   PRKRFGQNFLRDPAVIQRMVTAIAPREGETLLEIGPGEGALTEPLLARLG--TLTAVELD 62

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +   P L++   +    L +I+ DAL +D  +       +R++ NLPYN+ T +LF+ ++
Sbjct: 63  RDLAPRLQE---RFAPALRVIEGDALALDPAELAPAQGRLRVVGNLPYNVSTPILFHLLA 119

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A       E L LL Q+EV +R+ A       GRLSV+  +R +    F++    FFP+P
Sbjct: 120 AAD---VIEDLHLLLQREVVDRMVAPPGGKTRGRLSVMVQYRCRVERCFNVPAGAFFPAP 176

Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           KV S+ +  +PH  P+P   +    L+++   AFG RRKTLR SLK L        AG++
Sbjct: 177 KVMSSFVRLVPH-RPLPARAQDEAWLQEVVTAAFGGRRKTLRNSLKGLVTAQAFEAAGVD 235

Query: 257 TNLRAENLSIEDFCRI 272
              RAE LS+E F R+
Sbjct: 236 PGARAETLSVEAFVRL 251


>gi|83648741|ref|YP_437176.1| dimethyladenosine transferase [Hahella chejuensis KCTC 2396]
 gi|119365027|sp|Q2S9C3|RSMA_HAHCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83636784|gb|ABC32751.1| dimethyladenosine transferase [Hahella chejuensis KCTC 2396]
          Length = 273

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 141/260 (54%), Gaps = 7/260 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ +I  S        ++EIG G G LT+ LL  G   V  +E D+ 
Sbjct: 13  RKRFGQNFLHDQGVIDRIVRSINPKSDQNLVEIGPGLGALTEELLKSGG-SVTAVELDRD 71

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PIL+     +P +  +I+ DALK DF +      P+R+I NLPYNI T L+F+ +   
Sbjct: 72  LTPILRTKFFNYP-QFNVIEADALKFDFTQLATPERPMRLIGNLPYNISTPLIFHLL--- 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           T+    + +  + QKEV +R+ A+     YGRL V+  +  K   +F++ P  F P+PKV
Sbjct: 128 TFRGLVQDMYFMLQKEVVDRLAAKPGEDAYGRLGVMAQYYCKVESLFNVGPGAFQPAPKV 187

Query: 202 TSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++   P+  P   C  + +L  + ++AF  RRKTLR +LK+L   + L    I+  +
Sbjct: 188 WSAIVRLTPYTEPPLACKDVATLTTVVRQAFAMRRKTLRNTLKQLITVDALQSLDIDPQI 247

Query: 260 RAENLSIEDFCRITNILTDN 279
           R E L + +F RI + + D+
Sbjct: 248 RPERLGLPEFVRIADYVYDH 267


>gi|317493320|ref|ZP_07951742.1| dimethyladenosine transferase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918713|gb|EFV40050.1| dimethyladenosine transferase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 270

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/282 (36%), Positives = 151/282 (53%), Gaps = 22/282 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLTDQYVIDSIVSAIHPMPGQAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSP 118
           + +      K+ VIE D+     L    + HP   ++L I Q DA+ VDF +    +  P
Sbjct: 53  EPVAD-RMDKMTVIELDRDLAARL----ATHPFISSKLNIRQQDAMTVDFGELSQELGQP 107

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           +R+  NLPYNI T L+F+     T+      +  + QKEV  R+ A  NS  YGRL+V+ 
Sbjct: 108 LRVFGNLPYNISTPLMFHLF---TYTGAISDMHFMLQKEVVNRLVAGPNSKAYGRLTVMA 164

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKT 236
            +  +   + ++ P  F P+PKV S V+  IPH   P P   +  L +IT EAF +RRKT
Sbjct: 165 QYYCQVIPVLEVPPTAFRPAPKVDSAVVRLIPHATIPHPVKDIRVLSRITTEAFNQRRKT 224

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +R SL  L     L + GI+  LRAEN+S+E++C++ N L +
Sbjct: 225 VRNSLGHLFTPEQLTELGIDPALRAENISVENYCKLANWLCE 266


>gi|117925614|ref|YP_866231.1| dimethyladenosine transferase [Magnetococcus sp. MC-1]
 gi|171460784|sp|A0LA32|RSMA_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|117609370|gb|ABK44825.1| dimethyladenosine transferase [Magnetococcus sp. MC-1]
          Length = 279

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/270 (35%), Positives = 149/270 (55%), Gaps = 10/270 (3%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K +L  + + P K  GQNFL+D ++  +I   +G   G  V+EIG G G+LT  LL   
Sbjct: 7   IKLLLEQHGLSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLLQ-K 65

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYN 128
           A  V  +EKD++  P+L+ + +     L ++++DAL VD+      +  P+++ ANLPYN
Sbjct: 66  AGAVTAVEKDRKLLPLLR-VEAAGVGALTLVEEDALLVDYTALAQQLGGPLKLAANLPYN 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+ + +        +E + L+FQKEV +R+ A+  S  YG L+V      +    F
Sbjct: 125 ISTPLMVHLLDHHAA---FECMALMFQKEVAQRLAAEPGSKAYGALTVQCALWAEIRHGF 181

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG 246
           D+ P  F P+PKVTS V+H      P     +     ++ + AF +RRKTLR +LK +  
Sbjct: 182 DVPPAAFLPAPKVTSAVVHVQMMRQPRVAVEDERHFVRVVKAAFAQRRKTLRNTLKTICP 241

Query: 247 E--NLLHQAGIETNLRAENLSIEDFCRITN 274
           +    L QAGI+  LRAE L++  F ++ N
Sbjct: 242 DPNRWLEQAGIDGALRAEVLTLAQFAQLAN 271


>gi|260554070|ref|ZP_05826333.1| dimethyladenosine transferase [Acinetobacter sp. RUH2624]
 gi|260404809|gb|EEW98316.1| dimethyladenosine transferase [Acinetobacter sp. RUH2624]
          Length = 270

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E D+ 
Sbjct: 17  RKRFGQNFLHDQRVIAKIVRSVNPRPGDNIVEIGPGLAALTSPLIG-ECEALTVVELDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L +    HP RL I++ DALK DF +      P+R++ NLPYNI T LLF+ +   
Sbjct: 76  LAAGLPE-RVPHPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +     + +  + QKEV ERITA+ N+  YGRLSV+  +  + T +F++    F P PKV
Sbjct: 135 SQ---VKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKV 191

Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS V   +P+   PI    E +L ++    F +RRKTLR SLK +  E+   +AG++   
Sbjct: 192 TSAVFRLVPYEQKPIVAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMA 251

Query: 260 RAENLSIEDFCRITN 274
           R E L++ +F  + +
Sbjct: 252 RPETLTLAEFVALAD 266


>gi|118445093|ref|YP_879149.1| dimethyladenosine transferase [Clostridium novyi NT]
 gi|118135549|gb|ABK62593.1| dimethyladenosine transferase [Clostridium novyi NT]
          Length = 281

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 146/276 (52%), Gaps = 13/276 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y     K +GQNFL D N+L  I   S   +   VIEIG G G LT+ LL   A
Sbjct: 7   KDVVQKYNFKFTKSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLK-KA 65

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +KV  +E D +  PIL +     PN  E+I  DALKVDF +       ++++ANLPY + 
Sbjct: 66  KKVCAVELDSELIPILTEELKDFPN-FELIHKDALKVDFNELIGEEKSVKVVANLPYYVT 124

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +        ++SLT++ QKEV ERI ++ N   YG LS+L  +     ++  +
Sbjct: 125 TPIIARLLKEGYK---FKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTEILRKV 181

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG-- 246
            P  F P PKV S +I       P +    E L  KI +++F  RRKTLR ++K LG   
Sbjct: 182 PPTCFIPQPKVDSIIIKLDRLDEPRVKVKDEELFFKIVRQSFNMRRKTLRNAIKSLGDVS 241

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               E + + AGI+   R E LSIE+F ++ + + D
Sbjct: 242 GDHIEKVFNDAGIDPRRRGETLSIEEFGKLADSIYD 277


>gi|116054320|ref|YP_788765.1| dimethyladenosine transferase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889333|ref|YP_002438197.1| dimethyladenosine transferase [Pseudomonas aeruginosa LESB58]
 gi|254237194|ref|ZP_04930517.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           C3719]
 gi|296387098|ref|ZP_06876597.1| dimethyladenosine transferase [Pseudomonas aeruginosa PAb1]
 gi|115589541|gb|ABJ15556.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169125|gb|EAZ54636.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           C3719]
 gi|218769556|emb|CAW25316.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           LESB58]
          Length = 268

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 141/264 (53%), Gaps = 7/264 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + VI
Sbjct: 5   YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E DQ   P+LK +     +R  + Q DALK DF         +R++ NLPYNI T L+F+
Sbjct: 64  ELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLE---HAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++   P   P     +   L+++ +EAF +RRKTLR +LK L     +  A 
Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAE 239

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           ++  LR E L +  F R+ N L +
Sbjct: 240 VDPTLRPEQLDLAAFVRLANRLAE 263


>gi|169634292|ref|YP_001708028.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter baumannii SDF]
 gi|169794673|ref|YP_001712466.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter baumannii AYE]
 gi|184159517|ref|YP_001847856.1| dimethyladenosine transferase [Acinetobacter baumannii ACICU]
 gi|213157955|ref|YP_002320753.1| dimethyladenosine transferase [Acinetobacter baumannii AB0057]
 gi|239504128|ref|ZP_04663438.1| dimethyladenosine transferase [Acinetobacter baumannii AB900]
 gi|260558120|ref|ZP_05830330.1| dimethyladenosine transferase [Acinetobacter baumannii ATCC 19606]
 gi|301345850|ref|ZP_07226591.1| dimethyladenosine transferase [Acinetobacter baumannii AB056]
 gi|301512166|ref|ZP_07237403.1| dimethyladenosine transferase [Acinetobacter baumannii AB058]
 gi|301595546|ref|ZP_07240554.1| dimethyladenosine transferase [Acinetobacter baumannii AB059]
 gi|332851556|ref|ZP_08433533.1| dimethyladenosine transferase [Acinetobacter baumannii 6013150]
 gi|332867755|ref|ZP_08437827.1| dimethyladenosine transferase [Acinetobacter baumannii 6013113]
 gi|332873490|ref|ZP_08441441.1| dimethyladenosine transferase [Acinetobacter baumannii 6014059]
 gi|169147600|emb|CAM85461.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter baumannii AYE]
 gi|169153084|emb|CAP02154.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter baumannii]
 gi|183211111|gb|ACC58509.1| Dimethyladenosine transferase (rRNA methylation) [Acinetobacter
           baumannii ACICU]
 gi|193078414|gb|ABO13399.2| S-adenosylmethionine-6-N'N'-adenosyl [Acinetobacter baumannii ATCC
           17978]
 gi|213057115|gb|ACJ42017.1| dimethyladenosine transferase [Acinetobacter baumannii AB0057]
 gi|260408393|gb|EEX01701.1| dimethyladenosine transferase [Acinetobacter baumannii ATCC 19606]
 gi|322509429|gb|ADX04883.1| dimethyladenosine transferase [Acinetobacter baumannii 1656-2]
 gi|323519450|gb|ADX93831.1| dimethyladenosine transferase [Acinetobacter baumannii TCDC-AB0715]
 gi|332729901|gb|EGJ61233.1| dimethyladenosine transferase [Acinetobacter baumannii 6013150]
 gi|332733761|gb|EGJ64913.1| dimethyladenosine transferase [Acinetobacter baumannii 6013113]
 gi|332738315|gb|EGJ69191.1| dimethyladenosine transferase [Acinetobacter baumannii 6014059]
          Length = 270

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E D+ 
Sbjct: 17  RKRFGQNFLHDQRVIAKIVRSVNPRTGDNIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L +    HP RL I++ DALK DF +      P+R++ NLPYNI T LLF+ +   
Sbjct: 76  LAAGLPE-RVPHPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +     + +  + QKEV ERITA+ N+  YGRLSV+  +  + T +F++    F P PKV
Sbjct: 135 SQ---VKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKV 191

Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS V   +P+   PI    E +L ++    F +RRKTLR SLK +  E+   +AG++   
Sbjct: 192 TSAVFRLVPYEQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMA 251

Query: 260 RAENLSIEDFCRITN 274
           R E L++ +F  + +
Sbjct: 252 RPETLTLAEFVALAD 266


>gi|15595789|ref|NP_249283.1| dimethyladenosine transferase [Pseudomonas aeruginosa PAO1]
 gi|27151603|sp|Q9I5U5|RSMA_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|9946464|gb|AAG03981.1|AE004495_5 rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           PAO1]
          Length = 268

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 141/264 (53%), Gaps = 7/264 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + VI
Sbjct: 5   YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E DQ   P+LK +     +R  + Q DALK DF         +R++ NLPYNI T L+F+
Sbjct: 64  ELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLE---HAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++   P   P     +   L+++ +EAF +RRKTLR +LK L     +  A 
Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAE 239

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           ++  LR E L +  F R+ N L +
Sbjct: 240 VDPTLRPEQLDLAAFVRLANQLAE 263


>gi|170723958|ref|YP_001751646.1| dimethyladenosine transferase [Pseudomonas putida W619]
 gi|169761961|gb|ACA75277.1| dimethyladenosine transferase [Pseudomonas putida W619]
          Length = 266

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 7/268 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            HY+   +K  GQNFL D  I+ +I  +  +  G  ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EHYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL+   +   N   + Q DALK DF +    +  ++++ NLPYNI T L+
Sbjct: 62  VVELDKDLVPILQHKFAGRDN-FRLHQGDALKFDFNQLGVPARSLKVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLS---HAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH + P P      L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDHLLLERVVREAFNQRRKTLRNTLKGLLDSQAIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280
           AG++ +LR E L +  F R+ + L + Q
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLANQQ 265


>gi|313111762|ref|ZP_07797555.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           39016]
 gi|310884057|gb|EFQ42651.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           39016]
          Length = 268

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 141/264 (53%), Gaps = 7/264 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + VI
Sbjct: 5   YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E DQ   P+LK +     +R  + Q DALK DF         +R++ NLPYNI T L+F+
Sbjct: 64  ELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFTSLVESGEKLRVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLE---HAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++   P   P     +   L+++ +EAF +RRKTLR +LK L     +  A 
Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAE 239

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           ++  LR E L +  F R+ N L +
Sbjct: 240 VDPTLRPEQLDLAAFVRLANRLAE 263


>gi|51473851|ref|YP_067608.1| dimethyladenosine transferase [Rickettsia typhi str. Wilmington]
 gi|62900511|sp|Q68W66|RSMA_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|51460163|gb|AAU04126.1| dimethyladenosine transferase [Rickettsia typhi str. Wilmington]
          Length = 268

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 145/262 (55%), Gaps = 9/262 (3%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           + ++I P K  GQNF+ D ++  KI  +S   +   VIEIG G G LT+ +L    + + 
Sbjct: 10  ASHQINPLKKHGQNFIFDSSLCDKIIRASNISENSKVIEIGPGVGGLTRSILHKNPKSLT 69

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE D++  P+L +I   +PN L II+ D LK++      I   + +I+NLPY+IGT L+
Sbjct: 70  VIEIDERCIPLLNEIQGYYPN-LNIIKQDVLKINLTDL--IYDKVTVISNLPYHIGTELV 126

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
              +          ++ L+ QKEV ERI A  ++  YGRLSV+     K    FD++P  
Sbjct: 127 IRLLKEAK---LITNMILMLQKEVVERICAMPSTKAYGRLSVICQIVAKVEKCFDVAPTA 183

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLH 251
           F+P PKV S ++  IP  NP    L   +++IT+  F  RRK ++ SL+ L      +L 
Sbjct: 184 FYPHPKVYSAIVKIIPLENPPSIALINKVEQITKLVFAGRRKMIKSSLRNLVPNIHEVLT 243

Query: 252 QAGIETNLRAENLSIEDFCRIT 273
           Q  I  N RAENL+ +D+ RI 
Sbjct: 244 QLKINNNDRAENLTPKDYLRIA 265


>gi|261344781|ref|ZP_05972425.1| hypothetical protein PROVRUST_06046 [Providencia rustigianii DSM
           4541]
 gi|282567226|gb|EFB72761.1| dimethyladenosine transferase [Providencia rustigianii DSM 4541]
          Length = 269

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/281 (35%), Positives = 151/281 (53%), Gaps = 20/281 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I ++     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVDAMHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPI 119
           +    +G+R  K+ V+E D+     L  +  Q  ++L IIQ DA+ VDF +       PI
Sbjct: 53  E---PVGSRMDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPI 108

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R+  NLPYNI T L+F+     T+      +  + QKEV  R+ A   S  +GRLSV+  
Sbjct: 109 RVFGNLPYNISTPLMFHLF---TFTNSISDMNFMLQKEVVNRLVAGPGSKAFGRLSVMAQ 165

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRRKTL 237
           +      + ++ P  F P+PKV S V+  IPH  NP P   ++ L +IT +AF +RRKT+
Sbjct: 166 YYCNVVPVLEVPPTSFTPAPKVDSAVVRLIPHRENPYPVKDIKMLSRITTQAFNQRRKTI 225

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           R SL  L     L + GI+   RAEN+S+  +C++ N L++
Sbjct: 226 RNSLGDLLSVEQLIELGIDPGTRAENISVAHYCKMANYLSN 266


>gi|50086027|ref|YP_047537.1| dimethyladenosine transferase [Acinetobacter sp. ADP1]
 gi|62900521|sp|Q6F8A0|RSMA_ACIAD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49532003|emb|CAG69715.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter sp. ADP1]
          Length = 274

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/255 (37%), Positives = 139/255 (54%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  S     G  V+EIG G   LT  L+      + V+E D+ 
Sbjct: 21  RKRFGQNFLHDQRVIAKIVRSVNPRPGDNVVEIGPGLAALTSPLIG-ECDALTVVELDRD 79

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L D    HP RL I++ DALK DF +     SP+R++ NLPYNI T LLF+ +   
Sbjct: 80  LAAGLPD-RVPHPERLTIVEADALKYDFSQLATQESPLRVVGNLPYNISTPLLFHLLEFG 138

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +RITA+ N+  YGRLSV+  +  + T +F++    F P PKV
Sbjct: 139 DK---VKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYFCQPTFLFEVPAGAFNPPPKV 195

Query: 202 TSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS V   +P+   PI    E +L ++    F +RRKTLR SLK +  ++   +AGI+   
Sbjct: 196 TSAVFRLVPYKEKPIVAKDEKALSRLVGHVFTQRRKTLRNSLKGMLADDAFDKAGIDPMA 255

Query: 260 RAENLSIEDFCRITN 274
           R E L++  F  +++
Sbjct: 256 RPETLTLAQFVALSD 270


>gi|257465501|ref|ZP_05629872.1| dimethyladenosine transferase [Actinobacillus minor 202]
 gi|257451161|gb|EEV25204.1| dimethyladenosine transferase [Actinobacillus minor 202]
          Length = 289

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/269 (35%), Positives = 148/269 (55%), Gaps = 20/269 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D+NI+  I  +    +G  ++EIG G G LT+ +  L   K+ V+E D+ 
Sbjct: 15  RKRFGQNFLHDMNIIHGIVSAINPKNGQYLLEIGPGLGALTEPVAEL-VDKLTVVELDRD 73

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRL 133
               L+     HP   ++L II+ DAL+ +F ++F          +R+  NLPYNI T L
Sbjct: 74  LAERLR----HHPFLNHKLTIIEQDALRFNFREYFESLDLKEDEGVRVFGNLPYNISTPL 129

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+      +    + +  + QKEV +R+ A  NS  YGRL+++  +  +   + ++ P 
Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLEVPPT 186

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLL 250
            F P+PKV S V+  +PH   IP  ++    L ++T +AF +RRKTLR +L  L     L
Sbjct: 187 AFKPAPKVDSAVVRLVPH-KQIPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSAEQL 245

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
              GI+ N RAENL+I D+ R+ N L DN
Sbjct: 246 ETLGIDLNARAENLNIADYARLANWLCDN 274


>gi|50122780|ref|YP_051947.1| dimethyladenosine transferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|115311578|sp|Q6D0E0|RSMA_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49613306|emb|CAG76757.1| dimethyladenosine transferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 272

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 149/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116
                +G R  +  VIE D+     L+    +HP   ++L IIQ DA+ +DF        
Sbjct: 53  A---PIGERMDRFTVIELDRDLAARLE----KHPTLKDKLTIIQQDAMTIDFAALAEQAG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+     T+      +  + QKEV  R+ A  NS  +GRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKTFGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAELPYPVSDIRMLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KTLR SL  L     L + GI    RAEN+++E +CR+ N L+++
Sbjct: 223 KTLRNSLGNLFTPETLTELGINITSRAENVTVEQYCRLANWLSEH 267


>gi|261823067|ref|YP_003261173.1| dimethyladenosine transferase [Pectobacterium wasabiae WPP163]
 gi|261607080|gb|ACX89566.1| dimethyladenosine transferase [Pectobacterium wasabiae WPP163]
          Length = 272

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 150/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116
                +G R  +  VIE D+     L+    +HP   ++L IIQ DA+ +DF        
Sbjct: 53  A---PIGDRMDRFTVIELDRDLAARLE----KHPTLKDKLTIIQQDAMTIDFAALAEQAG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+     T+      +  + QKEV  R+ A  NS  +GRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P+PKV S V+  +PH + P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAVIPYPVSDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KTLR SL  L     L + GI    RAEN+++E +CR+ N L+++
Sbjct: 223 KTLRNSLGNLFTPETLTELGINVTSRAENVTVEQYCRLANWLSEH 267


>gi|254362983|ref|ZP_04979047.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Mannheimia haemolytica
           PHL213]
 gi|153094639|gb|EDN75443.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Mannheimia haemolytica
           PHL213]
          Length = 288

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/268 (35%), Positives = 148/268 (55%), Gaps = 19/268 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D+NI+  I  +    +G  ++EIG G G LT+ +  L   K+ V+E D+ 
Sbjct: 15  RKRFGQNFLHDMNIIHSIVSAINPKNGQFLLEIGPGLGALTEPVAEL-VDKLTVVEIDRD 73

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN----ISSPIRIIANLPYNIGTRLL 134
               L+     HP    +L II+ DAL+ +F  +FN        +R+  NLPYNI T L+
Sbjct: 74  LAERLR----HHPFLNQKLTIIEQDALRFNFRDYFNQLNLDEDSVRVFGNLPYNISTPLI 129

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   T+    + +  + QKEV +R+ A  NS  YGRL+++  +  +   + ++ P  
Sbjct: 130 FHLL---TFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVIPVLEVPPTA 186

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           F P+PKV S V+  +P+ N +P   +    L ++T +AF +RRKTLR +L  L     L 
Sbjct: 187 FKPAPKVDSAVVRLVPY-NQLPYPAKDVYWLNRVTTQAFNQRRKTLRNALSTLFSAEQLD 245

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
             G++   RAENL+I D+ R+ N L DN
Sbjct: 246 ALGVDLTARAENLTIADYVRLANWLHDN 273


>gi|283835115|ref|ZP_06354856.1| dimethyladenosine transferase [Citrobacter youngae ATCC 29220]
 gi|291069414|gb|EFE07523.1| dimethyladenosine transferase [Citrobacter youngae ATCC 29220]
          Length = 273

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 151/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  +++ I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+ ++F +    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELAQTMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPAPKVDSAVVRLVPHATMPYPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L + GI+  +RAEN+S+  +CR+ N L++N
Sbjct: 223 KTVRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCRMANYLSEN 267


>gi|237729348|ref|ZP_04559829.1| dimethyladenosine transferase [Citrobacter sp. 30_2]
 gi|226909077|gb|EEH94995.1| dimethyladenosine transferase [Citrobacter sp. 30_2]
          Length = 273

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 151/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  +++ I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+ ++F +    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELAQTMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPAPKVDSAVVRLVPHTTMPYPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L + GI+  +RAEN+S+  +CR+ N L++N
Sbjct: 223 KTVRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCRMANYLSEN 267


>gi|26987143|ref|NP_742568.1| dimethyladenosine transferase [Pseudomonas putida KT2440]
 gi|33516928|sp|Q88QT6|RSMA_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|24981775|gb|AAN66032.1|AE016232_5 dimethyladenosine transferase [Pseudomonas putida KT2440]
 gi|313496767|gb|ADR58133.1| KsgA [Pseudomonas putida BIRD-1]
          Length = 267

 Score =  159 bits (401), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 145/266 (54%), Gaps = 7/266 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  I+ +I  +  +  G  ++EIG G G LT+ LL  GA ++ V+
Sbjct: 5   YQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLDVV 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   PIL+   +   N   + Q DALK DF +       ++++ NLPYNI T L+F+
Sbjct: 64  ELDKDLVPILQHKFADRSN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLS---HAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++  +PH + P P      L+++ +EAF +RRKTLR ++K L     +  AG
Sbjct: 180 PPPKVDSAIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEAAG 239

Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280
           ++ +LR E L +  F R+ + L D Q
Sbjct: 240 VDGSLRPEQLDLAAFVRLADQLADQQ 265


>gi|332160258|ref|YP_004296835.1| dimethyladenosine transferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664488|gb|ADZ41132.1| dimethyladenosine transferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863032|emb|CBX73164.1| dimethyladenosine transferase [Yersinia enterocolitica W22703]
          Length = 272

 Score =  159 bits (401), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/283 (36%), Positives = 154/283 (54%), Gaps = 26/283 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS 117
           +    + AR   + VIE D+     L    + HP   ++L I Q+DA+K++F +   ++ 
Sbjct: 53  E---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQEDAMKINFSELAELAG 105

Query: 118 -PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTSAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P+PKV S V+  IPH+N P P   +  L +IT +AF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 223 KTVRNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265


>gi|318607172|emb|CBY28670.1| dimethyladenosine transferase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 272

 Score =  159 bits (401), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/283 (36%), Positives = 154/283 (54%), Gaps = 26/283 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS 117
           +    + AR   + VIE D+     L    + HP   ++L I Q+DA+K++F +   ++ 
Sbjct: 53  E---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQEDAMKINFSELAELAG 105

Query: 118 -PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTSAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P+PKV S V+  IPH+N P P   +  L +IT +AF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 223 KTVRNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265


>gi|67458648|ref|YP_246272.1| dimethyladenosine transferase [Rickettsia felis URRWXCal2]
 gi|67004181|gb|AAY61107.1| Dimethyladenosine transferase [Rickettsia felis URRWXCal2]
          Length = 243

 Score =  159 bits (401), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 94/241 (39%), Positives = 136/241 (56%), Gaps = 10/241 (4%)

Query: 8   HSLKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           H L +I  H   ++I P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ 
Sbjct: 4   HMLPSIAKHAASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRS 63

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           +L      + VIE D++  P+L +I   +PN L II+ DALK++          + II+N
Sbjct: 64  ILQKNPASLTVIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLG--YDKVTIISN 120

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY+IGT L+  W+          ++TL+ QKEV ERI A  ++  YGRLSV+    TK 
Sbjct: 121 LPYHIGTELVIRWLKEAR---LITNMTLMLQKEVVERICAMPSTKAYGRLSVICQLITKV 177

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKR 243
              FD++P  F+P PKV S ++  IP  NP    L   +++IT+ AF  RRK ++ SLK 
Sbjct: 178 EKCFDVAPTAFYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKN 237

Query: 244 L 244
           L
Sbjct: 238 L 238


>gi|187777327|ref|ZP_02993800.1| hypothetical protein CLOSPO_00879 [Clostridium sporogenes ATCC
           15579]
 gi|187774255|gb|EDU38057.1| hypothetical protein CLOSPO_00879 [Clostridium sporogenes ATCC
           15579]
          Length = 278

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/284 (37%), Positives = 158/284 (55%), Gaps = 16/284 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN   + K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT
Sbjct: 1   MNN--MNTKEIVNKYEFKFNKNLGQNFLVDESVLEDIIEGAEISKEDTVIEIGPGVGTLT 58

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A++V  IE D    PILK+   ++ N   +I  DALK+DF         I+++
Sbjct: 59  KELLE-KAKEVYSIELDGDLIPILKEELKEY-NNFTLIHKDALKIDFNGLMENKDSIKLV 116

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   +   T    ++SLT++ QKEV ERI A+ N   YG L+VL  +  
Sbjct: 117 ANLPYYVTTPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYC 173

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQ 239
              ++  +SP+ F P PKV S VI  +  L+     ++S K    + + +F  RRKTL  
Sbjct: 174 DTKIIRKVSPNCFIPRPKVDSIVIK-LDKLSEPRVKVKSEKLFFNVVRSSFNMRRKTLWN 232

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           SLK L       EN   +AGI++  R E LSIE+F ++++ + D
Sbjct: 233 SLKSLNIDKENMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 276


>gi|261338954|ref|ZP_05966812.1| hypothetical protein ENTCAN_05155 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318781|gb|EFC57719.1| dimethyladenosine transferase [Enterobacter cancerogenus ATCC
           35316]
          Length = 273

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 99/272 (36%), Positives = 146/272 (53%), Gaps = 18/272 (6%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KV 73
           H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT+    +G R  ++
Sbjct: 6   HQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDEL 62

Query: 74  IVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNI 129
            VIE D+     L+     HP    +L I Q DA+ +DF E    +  P+R+  NLPYNI
Sbjct: 63  TVIELDRDLAARLQ----THPFLGPKLTIYQQDAMTMDFGELSTKMGQPLRVFGNLPYNI 118

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  +      + +
Sbjct: 119 STPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYFCNVIPVLE 175

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S V+  +PH   P P   L  L +IT EAF +RRKT+R SL  L   
Sbjct: 176 VPPTAFTPPPKVDSAVVRLVPHKTMPYPVKELRVLSRITTEAFNQRRKTIRNSLGNLFTV 235

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           ++L + GI+  +RAEN+S+E +C++ N ++DN
Sbjct: 236 DVLAELGIDPTMRAENISVEQYCKLANYISDN 267


>gi|104779701|ref|YP_606199.1| dimethyladenosine transferase [Pseudomonas entomophila L48]
 gi|95108688|emb|CAK13382.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Pseudomonas entomophila L48]
          Length = 266

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 146/268 (54%), Gaps = 7/268 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            HY+   +K  GQNFL D  I+ +I  +  +  G  ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EHYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL+   +   N   + Q DALK DF +       ++++ NLPYNI T L+
Sbjct: 62  VVELDKDLVPILQHKFAGRGN-FRLHQGDALKFDFNQLGVPERSLKVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ ++          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLAHAN---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH + P P      L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDPLLLERVVREAFNQRRKTLRNTLKGLLDSQAIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280
           AG++ +LR E L +  F R+ + L + Q
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADKLAEQQ 265


>gi|152979807|ref|YP_001352110.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille]
 gi|226732589|sp|A6SV13|RSMA_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|151279884|gb|ABR88294.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille]
          Length = 255

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 138/260 (53%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D  +L  I  +       T++EIG G   +T++LL  G +++ V+E
Sbjct: 2   KHIPRKRFGQNFLTDDTVLYNIIRAIDPQPQDTMVEIGPGLAAMTRLLLE-GVQQMHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFN 136
            D+     LK   S  P RL I   DAL+ DF        S +R++ NLPYNI + LLF+
Sbjct: 61  LDRDLVERLK--KSFDPKRLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFH 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                   P  +    + QKEV ER+ A+  S  YGRLSV+  WR    +MF + P  F 
Sbjct: 119 LAE---MAPHVQDQHFMLQKEVVERMVAEPGSKVYGRLSVMLQWRYHMELMFVVPPTAFD 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S ++  IP   P+PC    L+++  +AF +RRK +R  L  +  E+ L + GI+
Sbjct: 176 PPPRVESAIVRMIPLAQPLPCDQAKLEQVVLKAFSQRRKVIRNCLAGMFAESDLLEVGID 235

Query: 257 TNLRAENLSIEDFCRITNIL 276
             LR E + +  +  + N L
Sbjct: 236 PQLRPETIPLAQYVALANRL 255


>gi|262377470|ref|ZP_06070692.1| dimethyladenosine transferase [Acinetobacter lwoffii SH145]
 gi|262307526|gb|EEY88667.1| dimethyladenosine transferase [Acinetobacter lwoffii SH145]
          Length = 270

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/258 (36%), Positives = 142/258 (55%), Gaps = 13/258 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80
           +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+    A  V+ +++D 
Sbjct: 17  RKRFGQNFLHDQRVIAKIVRSVNPRPGQNILEIGPGLAALTSPLIGECDALTVLELDRD- 75

Query: 81  QFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               +   +S +  HP RL II+ DAL+ D+ + F    P+R++ NLPYNI T LLF+ +
Sbjct: 76  ----LAAGLSGRVPHPERLTIIEADALRYDYSQLFQEDRPLRVVGNLPYNISTPLLFHLL 131

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV +RITA  N+  YGRLSV+  +  K T +F++ P  F P 
Sbjct: 132 EFGDK---VQDMHFMLQKEVVDRITASPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNPP 188

Query: 199 PKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKVTS V    P+ + PI    E +L ++    F +RRKTLR SLK +  E    +AG++
Sbjct: 189 PKVTSAVFRLEPYKVKPIVAKNEKALARLVSHVFTQRRKTLRNSLKGMLVEEGFEKAGVD 248

Query: 257 TNLRAENLSIEDFCRITN 274
              R E L++E F  +++
Sbjct: 249 PMARPETLTLEQFVALSD 266


>gi|293611446|ref|ZP_06693741.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826230|gb|EFF84600.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 270

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 138/255 (54%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E D+ 
Sbjct: 17  RKRFGQNFLHDQRVIAKIVRSVSPRTGDNIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L +    HP RL II+ DALK DF +      P+R++ NLPYNI T LLF+ +   
Sbjct: 76  LAAGLPE-RVPHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +     + +  + QKEV +RITA+ N+  YGRLSV+  +  + T +F++    F P PKV
Sbjct: 135 SK---VKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKV 191

Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS V   +P+   PI    E +L ++    F +RRKTLR SLK +  E+   +AG++   
Sbjct: 192 TSAVFRLVPYDQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMIAEDGFEKAGVDPMA 251

Query: 260 RAENLSIEDFCRITN 274
           R E L++  F  + +
Sbjct: 252 RPETLTLAQFVALAD 266


>gi|49082884|gb|AAT50842.1| PA0592 [synthetic construct]
          Length = 269

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 140/264 (53%), Gaps = 7/264 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + VI
Sbjct: 5   YQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LDVI 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E DQ   P+LK +     +R  + Q DALK DF         +R++ NLPYNI T L+F+
Sbjct: 64  ELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLE---HAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++   P   P     +   L+++ +EAF +RRKTLR +LK L     +  A 
Sbjct: 180 PPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAAE 239

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           ++  L  E L +  F R+ N L +
Sbjct: 240 VDPTLHPEQLDLAAFVRLANQLAE 263


>gi|291616236|ref|YP_003518978.1| KsgA [Pantoea ananatis LMG 20103]
 gi|291151266|gb|ADD75850.1| KsgA [Pantoea ananatis LMG 20103]
 gi|327392687|dbj|BAK10109.1| Dimethyladenosine transferase KsgA [Pantoea ananatis AJ13355]
          Length = 273

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 150/288 (52%), Gaps = 28/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       HY    +K  GQNFL D  I+  I  +        ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHYA---RKRFGQNFLNDQYIIDSIVSAIHPQRDQAIVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116
           +    +G R   + V+E D+     L+     HP    +L I Q DA+  DF        
Sbjct: 53  E---PVGERLDSLTVVELDRDLAARLQ----THPFLGPKLTIFQQDAMTFDFAALAKEKG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   S  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKR 233
           +  +  +   + ++ PH F P PKV S V+  +P++ P P  ++    L +IT EAFG+R
Sbjct: 163 MAQYYCQVIPVLEVPPHSFTPPPKVDSAVVRLVPYMTP-PHPVKDVRILSRITTEAFGQR 221

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           RKTLR SL  +     L +  I+T+LRAEN+S+  +C++ N L D+ D
Sbjct: 222 RKTLRNSLSHMVVAGALDELEIDTSLRAENVSVAQYCQLANWLADHLD 269


>gi|238922667|ref|YP_002936180.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656]
 gi|238874339|gb|ACR74046.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656]
          Length = 288

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 97/278 (34%), Positives = 149/278 (53%), Gaps = 20/278 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  Y    +K  GQNFL+D  IL++I +S+G      ++EIG G G +TQ L    AR+
Sbjct: 13  VLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCE-SARQ 71

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129
           VI +E D    PILKD  S++ N +++I DD LKVD       +N   PI+++ANLPY I
Sbjct: 72  VIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPIKVVANLPYYI 130

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     +       +S+T++ QKEV +R+ A      YG LS+   + +   ++ +
Sbjct: 131 TTPIIMGLFESHVP---IDSITIMVQKEVADRMQAAPGKKDYGALSLAVQYYSHPEIVVN 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG 246
           + P  F P PKV S+VI    +  P+   +E  K   KI + +F +RRKTL   L   GG
Sbjct: 188 VPPSCFMPQPKVGSSVISLKRYEKPV-VDVEDEKLMFKIIRASFNQRRKTLANGLNNFGG 246

Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
             L        +   G+  N+R E LS+  F +++NI+
Sbjct: 247 MGLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284


>gi|148545687|ref|YP_001265789.1| dimethyladenosine transferase [Pseudomonas putida F1]
 gi|148509745|gb|ABQ76605.1| dimethyladenosine transferase [Pseudomonas putida F1]
          Length = 267

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 144/266 (54%), Gaps = 7/266 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  I+ +I  +  +  G  ++EIG G G LT+ LL  GA ++ V+
Sbjct: 5   YQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLDVV 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   PIL    +   N   + Q DALK DF +       ++++ NLPYNI T L+F+
Sbjct: 64  ELDKDLVPILHHKFADRSN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLS---HAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++  +PH + P P      L+++ +EAF +RRKTLR ++K L     +  AG
Sbjct: 180 PPPKVDSAIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEAAG 239

Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280
           ++ +LR E L +  F R+ + L D Q
Sbjct: 240 VDGSLRPEQLDLAAFVRLADQLADQQ 265


>gi|320539608|ref|ZP_08039272.1| dimethyladenosine transferase [Serratia symbiotica str. Tucson]
 gi|320030220|gb|EFW12235.1| dimethyladenosine transferase [Serratia symbiotica str. Tucson]
          Length = 272

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 103/282 (36%), Positives = 151/282 (53%), Gaps = 20/282 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  +IEIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVSAIHPQPGEAIIEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSPI 119
           +    +GAR  ++ VIE D+     L + SS   ++L I Q DA+ V+F E       P+
Sbjct: 53  E---PVGARMDRMTVIELDRDLAAWLANHSSLK-DKLTIYQQDAMTVNFAEMAKQAGQPL 108

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R+  NLPYNI T L+F+      +      +  + QKEV  R+ A  +S  YGRLSV+  
Sbjct: 109 RVFGNLPYNISTPLMFHLF---IYTQEIRDMHFMLQKEVVNRLVAGPDSKAYGRLSVMAQ 165

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237
           +      + ++ P  F P+PKV S V+  +PH + P P   +  L +IT +AF +RRKT+
Sbjct: 166 YYCNVIPVLEVPPTSFTPAPKVDSAVVRLVPHSVMPNPVSDVHMLSRITTQAFNQRRKTI 225

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           R SL  L     L + GI  +LRAEN+S+  +C++ N L+DN
Sbjct: 226 RNSLGDLFTPVQLMELGINASLRAENISVAQYCKLANWLSDN 267


>gi|229592954|ref|YP_002875073.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25]
 gi|229364820|emb|CAY52848.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25]
          Length = 270

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 143/265 (53%), Gaps = 7/265 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            HY+   +K  GQNFL D  ++ +I  S  +     ++EIG G G LTQ LL  G  ++ 
Sbjct: 3   EHYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGG-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF       + +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNQQFAGMPN-FNLHQGDALKFDFNTLNAAPNSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ ++          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH + P P      L+++ +EAF +RRKTLR +LK L  +  +  
Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHKLLERVVREAFNQRRKTLRNTLKALLSQAEIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
           AG++ +LR E L +  F R+ + L 
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLA 262


>gi|110834909|ref|YP_693768.1| ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2]
 gi|122064277|sp|Q0VMV2|RSMA_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|110648020|emb|CAL17496.1| Ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2]
          Length = 280

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/264 (35%), Positives = 143/264 (54%), Gaps = 10/264 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+FL D N++ ++  + G   G T++EIG G G LT  LL      + V+E D+ 
Sbjct: 7   RKRFGQHFLHDRNLVDRMIRTLGLQTGDTLVEIGPGRGALTYPLLE-ELPHLHVVELDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
              +L+  ++  P RL I + DAL+ DF        P+R+I NLPYNI T L+F+ ++ A
Sbjct: 66  LIALLRQENT--PERLTIHESDALRFDFRTLKPADKPLRVIGNLPYNISTPLIFHLLAQA 123

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +T + QKEV ER+TA   +  +GRLS++  +  +A  +F + P  F P P+
Sbjct: 124 DAI----SDMTFMLQKEVVERLTASPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSPPPR 179

Query: 201 VTSTVIHFIPHLNPI-PCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  IPH +P  P   E  L+K+  +AF +RRK +R  LK           GI+  
Sbjct: 180 VDSAVVRLIPHDSPPHPADDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFQAVGIDAG 239

Query: 259 LRAENLSIEDFCRITNILTDNQDI 282
           LR + LS+ D+  + NI     D+
Sbjct: 240 LRPDQLSVADYVALANISRPPADV 263


>gi|167031448|ref|YP_001666679.1| dimethyladenosine transferase [Pseudomonas putida GB-1]
 gi|166857936|gb|ABY96343.1| dimethyladenosine transferase [Pseudomonas putida GB-1]
          Length = 266

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/266 (34%), Positives = 146/266 (54%), Gaps = 7/266 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  ++ +I  +  +  G  ++EIG G G LT+ LL  GA ++ V+
Sbjct: 5   YQHRARKRFGQNFLHDAGVIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLDVV 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   PIL+   +   N   + Q DALK DF +       ++++ NLPYNI T L+F+
Sbjct: 64  ELDKDLVPILQHKFADRGN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLS---HAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++  +PH + P P    + L+++ +EAF +RRKTLR ++K L     +  AG
Sbjct: 180 PPPKVDSAIVRLVPHEVLPHPAKDAKLLEQVVREAFNQRRKTLRNTMKGLLDSAAIEAAG 239

Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280
           ++ +LR E L +  F R+ + L D Q
Sbjct: 240 VDGSLRPEQLDLAAFVRLADQLADQQ 265


>gi|145300235|ref|YP_001143076.1| dimethyladenosine transferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853007|gb|ABO91328.1| dimethyladenosine transferase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 275

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 149/284 (52%), Gaps = 17/284 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M++K  S K  + H     +K  GQNFL D  ++ +I  +     G  ++EIG G   LT
Sbjct: 1   MSSKVQSNKVHMGH---TARKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALT 57

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS-SP 118
           + + +    K+ V+E D+     L+    +HP   ++L +I+ DA++ DF         P
Sbjct: 58  EPVAS-QMDKMTVVELDRDLAARLR----EHPTLKDKLTVIEADAMRFDFGTLMGEGKGP 112

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           +RI  NLPYNI T L+F+      +    E +  + QKEV  R++A   S  YGRLSV+ 
Sbjct: 113 LRIFGNLPYNISTPLIFHLCD---FADRVEDMHFMLQKEVVLRMSAGPGSKAYGRLSVMV 169

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKT 236
            +  +   + ++ P  F P+PKV S V+  +PH NP  +   +  L ++  E FG+RRKT
Sbjct: 170 QYYCQVIPVLEVGPGAFKPAPKVDSAVVRLVPHKNPTIVAKDIRCLSRVCTEGFGQRRKT 229

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +R S      +  L + GI+ NLR ENLS+E F  I N L D Q
Sbjct: 230 IRNSFANFITDAQLTELGIDGNLRPENLSLEQFVMIANWLADQQ 273


>gi|161830385|ref|YP_001595993.1| dimethyladenosine transferase [Coxiella burnetii RSA 331]
 gi|226729775|sp|A9N9I7|RSMA_COXBR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|161762252|gb|ABX77894.1| dimethyladenosine transferase [Coxiella burnetii RSA 331]
          Length = 258

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 140/257 (54%), Gaps = 8/257 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+FL D  +L+KI  +       T++EIG G G LT  LLT     + ++E D+ 
Sbjct: 7   RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLT-ECDNLALVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   +Q  N + I Q+DAL+ DF        P+R++ NLPYNI T LLF+  S  
Sbjct: 66  LVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHLFSQI 123

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 E +  + QKEV  RITA+  S  YGRLSV+  +    T +F +SP  F P P+V
Sbjct: 124 HC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAKYFCDNTYLFTVSPQAFTPPPRV 180

Query: 202 TSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S +I  IP  N  P+   L+ L  + +EAF  RRKT+  +LK+L   +      I   L
Sbjct: 181 ESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL 240

Query: 260 RAENLSIEDFCRITNIL 276
           R + L++EDF +I+NIL
Sbjct: 241 RPQELTVEDFVKISNIL 257


>gi|253988048|ref|YP_003039404.1| dimethyladenosine transferase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779498|emb|CAQ82659.1| dimethyladenosine transferase [Photorhabdus asymbiotica]
          Length = 272

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 155/287 (54%), Gaps = 20/287 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVAAINPQPGQAVLEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119
           +    +G R  K+ V+E D+     L+ +  Q  ++L IIQ DA+ V+F +       P+
Sbjct: 53  E---PVGERMDKMTVVELDRDLAARLQ-VHPQLKDKLTIIQQDAMTVNFGELSQQRGLPL 108

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A   S  +GRLSV+  
Sbjct: 109 RVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPGSKAFGRLSVMAQ 165

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237
           +  +   + ++ P  F P+PKV S V+  IPH + P P   +  L +IT +AF +RRKT+
Sbjct: 166 YYCQVIPVLEVPPTAFTPAPKVDSAVVRLIPHKSIPYPVKNIRMLSRITTQAFNQRRKTI 225

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284
           R SL  L     L + GI+ + RAEN+S+E +C++ N L++  ++ +
Sbjct: 226 RNSLGDLFTVEQLTEFGIDPSTRAENISVEQYCKMANYLSEQPEMQL 272


>gi|165918726|ref|ZP_02218812.1| dimethyladenosine transferase [Coxiella burnetii RSA 334]
 gi|212213440|ref|YP_002304376.1| dimethyladenosine transferase [Coxiella burnetii CbuG_Q212]
 gi|215919310|ref|NP_820957.2| dimethyladenosine transferase [Coxiella burnetii RSA 493]
 gi|218511667|sp|Q83AC2|RSMA_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729773|sp|B6J3A6|RSMA_COXB2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|165917554|gb|EDR36158.1| dimethyladenosine transferase [Coxiella burnetii RSA 334]
 gi|206584195|gb|AAO91471.2| dimethyladenosine transferase [Coxiella burnetii RSA 493]
 gi|212011850|gb|ACJ19231.1| dimethyladenosine transferase [Coxiella burnetii CbuG_Q212]
          Length = 258

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 140/257 (54%), Gaps = 8/257 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+FL D  +L+KI  +       T++EIG G G LT  LLT     + ++E D+ 
Sbjct: 7   RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLT-ECDNLALVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   +Q  N + I Q+DAL+ DF        P+R++ NLPYNI T LLF+  S  
Sbjct: 66  LVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHLFSQI 123

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 E +  + QKEV  RITA+  S  YGRLSV+  +    T +F +SP  F P P+V
Sbjct: 124 HC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRV 180

Query: 202 TSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S +I  IP  N  P+   L+ L  + +EAF  RRKT+  +LK+L   +      I   L
Sbjct: 181 ESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL 240

Query: 260 RAENLSIEDFCRITNIL 276
           R + L++EDF +I+NIL
Sbjct: 241 RPQELTVEDFVKISNIL 257


>gi|237746914|ref|ZP_04577394.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter
           formigenes HOxBLS]
 gi|229378265|gb|EEO28356.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter
           formigenes HOxBLS]
          Length = 256

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 136/260 (52%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P+K  GQNFL D ++L KI  +        ++EIG G G +T  LL   +R + VIE
Sbjct: 2   KHLPRKRFGQNFLKDPSVLDKIIAAIAPAASDIMVEIGPGMGAMTGKLLPSLSR-LEVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFN 136
            D+     L++     P +L + Q DAL  D       S   IRI+ NLPYNI T LLF+
Sbjct: 61  LDRDLVVYLRNTFP--PEKLVVHQGDALAFDMRSLKEQSGEKIRIVGNLPYNISTPLLFH 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +       F +    + Q+EV ER+ A+  S  YGRLSV+  W+    M+F + P  F 
Sbjct: 119 LLEFSL---FVKDQHFMLQREVVERMVAEPGSKAYGRLSVMLQWQYDMDMLFIVPPEAFD 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P PKV S V+  IP  NP  C   +L+K   +AF +RRK LR +L     E  L   GIE
Sbjct: 176 PQPKVDSAVVRMIPKENPEKCSFPALEKTVTQAFSQRRKMLRNNLAPFFTEAELTGLGIE 235

Query: 257 TNLRAENLSIEDFCRITNIL 276
              R E LS+E F R+ N L
Sbjct: 236 PTKRPEELSVEQFIRLANHL 255


>gi|120556413|ref|YP_960764.1| dimethyladenosine transferase [Marinobacter aquaeolei VT8]
 gi|226732595|sp|A1U6F8|RSMA_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120326262|gb|ABM20577.1| dimethyladenosine transferase [Marinobacter aquaeolei VT8]
          Length = 276

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 8/259 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++++I  +       +++EIG G G +T+ +L +  R + V+E D+ 
Sbjct: 10  RKRFGQNFLHDPGVIERIVRAINPKPEDSIVEIGPGLGAITEEILAINPR-LQVVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P+L+     +P    I + DAL  DF +  +   P+RI+ NLPYNI T L+F+ +S  
Sbjct: 69  LIPVLRTKFFNYPE-FRIHEADALSFDFSQLVS-DRPLRIVGNLPYNISTPLIFHLLSQS 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +R+ A     +YGRL ++  +  K   +F++ P  F P+PKV
Sbjct: 127 G---VVQDMHFMLQKEVVQRLAAVPGDNNYGRLGIMAQYFCKVQPLFEVGPGAFRPAPKV 183

Query: 202 TSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++  +PH   P P   L++L+ + + AF  RRKTLR++L  +     L   GI   L
Sbjct: 184 DSAIVRLVPHKELPYPAKDLKTLQAVVRTAFNARRKTLRKALAAMVTVEQLQSLGINDGL 243

Query: 260 RAENLSIEDFCRITNILTD 278
           R ENL + D+ RI ++L D
Sbjct: 244 RPENLGLADYVRIADLLAD 262


>gi|146310264|ref|YP_001175338.1| dimethyladenosine transferase [Enterobacter sp. 638]
 gi|166987694|sp|A4W6F7|RSMA_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|145317140|gb|ABP59287.1| dimethyladenosine transferase [Enterobacter sp. 638]
          Length = 273

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/272 (35%), Positives = 149/272 (54%), Gaps = 18/272 (6%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KV 73
           H   + +K  GQNFL D  +++ I  +     G  ++EIG G   LT+    +G R  ++
Sbjct: 6   HQGHLARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDEM 62

Query: 74  IVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNI 129
            VIE D+     LK     HP    +L I Q DA+ ++F +    +  P+R+  NLPYNI
Sbjct: 63  TVIELDRDLAARLKT----HPFLGPKLTIYQQDAMTMNFAELSEKLGQPLRVFGNLPYNI 118

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  +  +   + +
Sbjct: 119 STPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQIIPVLE 175

Query: 190 ISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P+PKV S V+  +PH + P P   L  L +IT EAF +RRKT+R SL      
Sbjct: 176 VPPTAFTPAPKVESAVVRLVPHAVMPHPVKELRVLSRITTEAFNQRRKTIRNSLGNTFTV 235

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           ++L + GI+  +RAEN+S+E +C++ N ++DN
Sbjct: 236 DVLTELGIDPAMRAENISVEQYCKLANYISDN 267


>gi|330813911|ref|YP_004358150.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487006|gb|AEA81411.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 258

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 152/261 (58%), Gaps = 8/261 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL +  I+ +I  S+       V E+G G G L++ ++ +  +K + +E D+ 
Sbjct: 2   KKKFGQNFLNNQTIIDQIITSANITKDSIVYEVGPGDGALSREIVKINPKKYLAVEIDKG 61

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L D+ ++  +   II +DAL+ D    F  S  + II+NLPYNI  +LL  WI+  
Sbjct: 62  LIQKLDDVFAKKEHW--IINEDALQFDETSVF--SKNVTIISNLPYNISLKLLLKWINQY 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P+++ + L+FQKEVGERI +++NS  YGR+S++     + + + DI+ + FFP PKV
Sbjct: 118 ITNPWFDQMILMFQKEVGERILSEENSKKYGRISLIVSAFFQCSKILDINKNDFFPVPKV 177

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET-- 257
            S +I F+P    I     +  L+ +++  F  RRK L+  +K+L  E ++ +  ++   
Sbjct: 178 DSVMIKFVPLKKTIINNKNIHKLELLSKTLFANRRKKLKNKIKQLFDERVIEENKLDQYF 237

Query: 258 NLRAENLSIEDFCRITNILTD 278
           +LRAEN+S E+F ++T +L D
Sbjct: 238 DLRAENISKENFYQLTKLLKD 258


>gi|291526466|emb|CBK92053.1| dimethyladenosine transferase [Eubacterium rectale DSM 17629]
          Length = 292

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 148/277 (53%), Gaps = 18/277 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  Y    +K  GQNFL+D  IL++I +S+G      ++EIG G G +TQ L    AR+
Sbjct: 13  VLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCE-SARQ 71

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129
           VI +E D    PILKD  S++ N +++I DD LKVD       +N   PI+++ANLPY I
Sbjct: 72  VIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPIKVVANLPYYI 130

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     +       +S+T++ QKEV +R+ A      YG LS+   + +   ++ +
Sbjct: 131 TTPIIMGLFESHVP---IDSITIMVQKEVADRMQAGPGKKDYGALSLAVQYYSHPEIVVN 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S+VI    +  P+    +   + KI + +F +RRKTL   L   GG 
Sbjct: 188 VPPSCFMPQPKVGSSVISLKRYEKPVVDVDDEKLMFKIIRASFNQRRKTLANGLNNFGGM 247

Query: 248 NL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
            L        +   G+  N+R E LS+  F +++NI+
Sbjct: 248 GLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284


>gi|291526963|emb|CBK92549.1| dimethyladenosine transferase [Eubacterium rectale M104/1]
          Length = 288

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 148/277 (53%), Gaps = 18/277 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  Y    +K  GQNFL+D  IL++I +S+G      ++EIG G G +TQ L    AR+
Sbjct: 13  VLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCE-SARQ 71

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129
           VI +E D    PILKD  S++ N +++I DD LKVD       +N   PI+++ANLPY I
Sbjct: 72  VIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPIKVVANLPYYI 130

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     +       +S+T++ QKEV +R+ A      YG LS+   + +   ++ +
Sbjct: 131 TTPIIMGLFESHVP---IDSITIMVQKEVADRMQAGPGKKDYGALSLAVQYYSHPEIVVN 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S+VI    +  P+    +   + KI + +F +RRKTL   L   GG 
Sbjct: 188 VPPSCFMPQPKVGSSVISLKRYEKPVVDVDDEKLMFKIIRASFNQRRKTLANGLNNFGGM 247

Query: 248 NL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
            L        +   G+  N+R E LS+  F +++NI+
Sbjct: 248 GLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284


>gi|291612514|ref|YP_003522671.1| dimethyladenosine transferase [Sideroxydans lithotrophicus ES-1]
 gi|291582626|gb|ADE10284.1| dimethyladenosine transferase [Sideroxydans lithotrophicus ES-1]
          Length = 264

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/264 (38%), Positives = 148/264 (56%), Gaps = 23/264 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           KK  GQNFL+D NI+  I  +        ++EIG G G LT+ LL  L    V+ I++D 
Sbjct: 13  KKRFGQNFLVDQNIIADIVRAIRPEADDNMVEIGPGLGALTRPLLKHLNILHVVEIDRD- 71

Query: 81  QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               I+  + + +P +++ I + DALK DF     +++P+RI+ NLPYNI + LLF++  
Sbjct: 72  ----IIARLKTDYPQDKIVIHEGDALKFDFA---TLAAPLRIVGNLPYNISSPLLFHF-- 122

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           AD +      +  + Q EV ER+ A  ++P YGRLSV+  +R     + D+ P  F P+P
Sbjct: 123 AD-YAARITDMHFMLQNEVVERMVAAPSTPEYGRLSVMLQYRFHMEKLIDVPPQSFRPAP 181

Query: 200 KVTSTVIHFIPHLNPIPC---CLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           KV S ++  I    PIP    C++      K+   AFG+RRKTLR +LK    E  L Q 
Sbjct: 182 KVDSAIVRMI----PIPAGEICVKDEALFAKVVSAAFGQRRKTLRNTLKNYLPEADLLQL 237

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           GI+  LRAENL + +F  I N L+
Sbjct: 238 GIDPQLRAENLGVPEFALIANHLS 261


>gi|71279824|ref|YP_271174.1| dimethyladenosine transferase [Colwellia psychrerythraea 34H]
 gi|119365017|sp|Q47VJ8|RSMA_COLP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71145564|gb|AAZ26037.1| dimethyladenosine transferase [Colwellia psychrerythraea 34H]
          Length = 301

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/283 (35%), Positives = 154/283 (54%), Gaps = 23/283 (8%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     KK  GQNFL +  ++  I ++     G  +IEIG G G LT
Sbjct: 1   MNDKKH-----LGHQA---KKRFGQNFLHNDAVISDIVDAINPEPGENLIEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119
           + ++   A K+ V+E D+     L+     HP     L I + DALK DF +      P+
Sbjct: 53  EPVIE-RAGKLSVVELDRDLAHRLR----HHPFLAKDLTIYETDALKFDFSELATEEQPL 107

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RI  NLPYNI T L+F+ +   T+    + +  + QKEV ER+ A  +   YGRLS++T 
Sbjct: 108 RIFGNLPYNISTPLIFHLL---TFKDKVKDMHFMLQKEVVERMAAGPHCKAYGRLSIMTQ 164

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKT 236
           ++ +   + +I P  F P+PKV S ++  IPH    NP+   + +L  +   AF +RRKT
Sbjct: 165 YQCQVFPVMEIGPEAFKPAPKVDSAIVRLIPHAHIENPVK-DINALNTVCLAAFNQRRKT 223

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +R + K+L  E  L +  I+ NLR ENLS++++ ++ + + DN
Sbjct: 224 IRNTFKKLITEAQLAELNIDANLRPENLSLDEYKKLADFIVDN 266


>gi|153206938|ref|ZP_01945756.1| dimethyladenosine transferase [Coxiella burnetii 'MSU Goat Q177']
 gi|212219490|ref|YP_002306277.1| dimethyladenosine transferase [Coxiella burnetii CbuK_Q154]
 gi|226729772|sp|B6J641|RSMA_COXB1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120577011|gb|EAX33635.1| dimethyladenosine transferase [Coxiella burnetii 'MSU Goat Q177']
 gi|212013752|gb|ACJ21132.1| dimethyladenosine transferase [Coxiella burnetii CbuK_Q154]
          Length = 258

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 140/257 (54%), Gaps = 8/257 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+FL D  +L+KI  +       T++EIG G G LT  LLT     + ++E D+ 
Sbjct: 7   RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLT-ECDNLALVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   +Q  N + I Q+DAL+ DF        P+R++ NLPYNI T LLF+  S  
Sbjct: 66  LVAFLQKKYNQQKN-ITIYQNDALQFDFSSA-KTDKPLRVVGNLPYNISTPLLFHLFSQI 123

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 E +  + QKEV  RITA+  S  YGRLSV+  +    T +F +SP  F P P+V
Sbjct: 124 HC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRV 180

Query: 202 TSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S +I  IP  N  P+   L+ L  + +EAF  RRKT+  +LK+L   +      I   L
Sbjct: 181 ESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL 240

Query: 260 RAENLSIEDFCRITNIL 276
           R + L++EDF +I+NIL
Sbjct: 241 RPQELTVEDFVKISNIL 257


>gi|168182310|ref|ZP_02616974.1| dimethyladenosine transferase [Clostridium botulinum Bf]
 gi|237793398|ref|YP_002860950.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657]
 gi|259494242|sp|C3KXY4|RSMA_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|182674690|gb|EDT86651.1| dimethyladenosine transferase [Clostridium botulinum Bf]
 gi|229261997|gb|ACQ53030.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657]
          Length = 275

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/276 (36%), Positives = 155/276 (56%), Gaps = 14/276 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   A
Sbjct: 4   KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLE-RA 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V  IE D    PIL++   ++ N   +I  DALK+DF +       I+++ANLPY + 
Sbjct: 63  KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNRLMENKDSIKLVANLPYYVT 121

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +   T    ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  +
Sbjct: 122 TPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCDTKIIRKV 178

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244
           SP+ F P PKV S VI  +  L+     ++S K    + + +F  RRKTL  SLK L   
Sbjct: 179 SPNCFIPRPKVDSIVIK-LDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNIN 237

Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI++  R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 273


>gi|299768749|ref|YP_003730775.1| dimethyladenosine transferase [Acinetobacter sp. DR1]
 gi|298698837|gb|ADI89402.1| dimethyladenosine transferase [Acinetobacter sp. DR1]
          Length = 270

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/255 (36%), Positives = 137/255 (53%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  S     G  V+EIG G   LT  L+      + V+E D+ 
Sbjct: 17  RKRFGQNFLHDQRVIAKIVRSVNPRAGENVVEIGPGLAALTSPLIG-ECDALTVVELDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L +    HP RL II+ DALK DF +      P+R++ NLPYNI T LLF+ +   
Sbjct: 76  LAAGLPE-RVPHPERLTIIEADALKYDFNELVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +     + +  + QKEV ERITA+ N+  YGRLSV+  +  + T +F++    F P PKV
Sbjct: 135 SK---VKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKV 191

Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS V   +P+   PI    E +L ++    F +RRKTLR SLK +  ++   +AG+    
Sbjct: 192 TSAVFRLVPYEQKPIVAKDEKALARLVAHVFTQRRKTLRNSLKGMIADDGFEKAGVNPMA 251

Query: 260 RAENLSIEDFCRITN 274
           R E L++  F  + +
Sbjct: 252 RPETLTLAQFVALAD 266


>gi|62178655|ref|YP_215072.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|75484893|sp|Q57TH0|RSMA_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62126288|gb|AAX63991.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase;
           kasugamycin resistance [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322713108|gb|EFZ04679.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 273

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 150/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  K+ VIE D+     L+     HP   ++L I Q DA+ ++F E    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQT----HPFLGSKLTIYQQDAMTMNFGELSAQLG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N
Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267


>gi|262281588|ref|ZP_06059366.1| dimethyladenosine transferase [Acinetobacter calcoaceticus RUH2202]
 gi|262256964|gb|EEY75704.1| dimethyladenosine transferase [Acinetobacter calcoaceticus RUH2202]
          Length = 270

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/255 (36%), Positives = 138/255 (54%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  S     G  V+EIG G   LT  L+      + V+E D+ 
Sbjct: 17  RKRFGQNFLHDQRVIAKIVRSVNPRAGENVVEIGPGLAALTSPLIG-ECDALTVVELDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L +    HP RL II+ DALK DF +      P+R++ NLPYNI T LLF+ +   
Sbjct: 76  LAAGLPE-RVPHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +     + +  + QKEV +RITA+ N+  YGRLSV+  +  + T +F++    F P PKV
Sbjct: 135 SK---VKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKV 191

Query: 202 TSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS V   +P+   PI    E +L ++    F +RRKTLR SLK +  E+   +AG++   
Sbjct: 192 TSAVFRLVPYEQKPIIAKDEKALARLVGHVFTQRRKTLRNSLKGMIAEDGFEKAGVDPMA 251

Query: 260 RAENLSIEDFCRITN 274
           R E L++  F  + +
Sbjct: 252 RPETLTLTQFVALAD 266


>gi|295098565|emb|CBK87655.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 273

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/272 (35%), Positives = 146/272 (53%), Gaps = 18/272 (6%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KV 73
           H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT+    +G R  ++
Sbjct: 6   HQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDEL 62

Query: 74  IVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNI 129
            VIE D+     L+     HP    +L I Q DA+ ++F +    +  P+R+  NLPYNI
Sbjct: 63  TVIELDRDLAARLQ----THPFLGPKLTIYQQDAMTMNFGELSEKMGQPLRVFGNLPYNI 118

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  +      + +
Sbjct: 119 STPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLE 175

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S V+  +PH   P P   L  L +IT EAF +RRKT+R SL  L   
Sbjct: 176 VPPSAFTPPPKVDSAVVRLVPHKTMPYPVKDLRVLSRITTEAFNQRRKTIRNSLGNLFTV 235

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           ++L + GI+  +RAEN+S+E +C++ N ++DN
Sbjct: 236 DVLAELGIDPAMRAENISVEQYCKLANYISDN 267


>gi|226946690|ref|YP_002801763.1| dimethyladenosine transferase [Azotobacter vinelandii DJ]
 gi|226721617|gb|ACO80788.1| dimethyladenosine transferase [Azotobacter vinelandii DJ]
          Length = 272

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/262 (35%), Positives = 140/262 (53%), Gaps = 7/262 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  ++ +I  +        ++EIG G G LT+ LL  GAR + VI
Sbjct: 5   YQHRARKRFGQNFLHDAGVIHRILRAIHPRADERLVEIGPGQGALTEGLLGSGAR-LDVI 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D    P+LK      P R  + Q DALK DF +       +RI+ NLPYNI T L+F+
Sbjct: 64  ELDLDLIPLLKLKFGLEP-RFHLHQGDALKFDFARLCGTPHSLRIVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           +  + QKEV ER+ A+     +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLEHAG---LIRDMHFMLQKEVVERLAAEPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++  +PH   P P    + L++I +EAF +RRKTLR +LK L     +  AG
Sbjct: 180 PPPKVDSAIVRLVPHETLPHPARDPALLERIVREAFNQRRKTLRNTLKGLLAATDIEAAG 239

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           ++ +LR E L +  F R+ + L
Sbjct: 240 VDGSLRPEQLDLAAFVRLADHL 261


>gi|117618457|ref|YP_855484.1| dimethyladenosine transferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166221642|sp|A0KGT8|RSMA_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|117559864|gb|ABK36812.1| dimethyladenosine transferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 271

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 142/272 (52%), Gaps = 16/272 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  ++ +I  +     G  ++EIG G   LT+ + +    K+ V
Sbjct: 7   HMGHTARKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALTEPVAS-QMDKMTV 65

Query: 76  IEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGT 131
           +E D+     L+    +HP    +L +I+ DA++ DF         P+RI  NLPYNI T
Sbjct: 66  VELDRDLAARLR----EHPTLKEKLTVIEADAMRFDFGTLMGEGKGPLRIFGNLPYNIST 121

Query: 132 RLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
            L+F+    AD      E +  + QKEV  R+ A   S  YGRLSV+T +  +   + ++
Sbjct: 122 PLIFHLCEFADRV----EDMHFMLQKEVVLRLAAGPGSKAYGRLSVMTQYYCQVVPVLEV 177

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            P  F P+PKV S V+  IPH NP  +   +  L ++  E FG+RRKT+R S      + 
Sbjct: 178 GPGAFKPAPKVDSAVVRLIPHKNPTIVAKDIRCLNRVCTEGFGQRRKTIRNSFSNFITDA 237

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            L + GI+ NLR ENLS+E F  I N L D Q
Sbjct: 238 QLTELGIDGNLRPENLSLEQFVMIANWLADQQ 269


>gi|261493820|ref|ZP_05990334.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495045|ref|ZP_05991512.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309287|gb|EEY10523.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310523|gb|EEY11712.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 288

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/268 (35%), Positives = 147/268 (54%), Gaps = 19/268 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D+NI+  I  +    +G  ++EIG G G LT+ +  L   K+ V+E D+ 
Sbjct: 15  RKRFGQNFLHDMNIIHSIVSAINPKNGQFLLEIGPGLGALTEPVAEL-VDKLTVVEIDRD 73

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGTRLL 134
               L+     HP    +L II+ DAL+ +   +FN        +R+  NLPYNI T L+
Sbjct: 74  LAERLR----HHPFLNQKLTIIEQDALRFNVRDYFNQLNLDEDSVRVFGNLPYNISTPLI 129

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   T+    + +  + QKEV +R+ A  NS  YGRL+++  +  +   + ++ P  
Sbjct: 130 FHLL---TFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVIPVLEVPPTA 186

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           F P+PKV S V+  +P+ N +P   +    L ++T +AF +RRKTLR +L  L     L 
Sbjct: 187 FKPAPKVDSAVVRLVPY-NQLPYPAKDVYWLNRVTTQAFNQRRKTLRNALSTLFSAEQLE 245

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
             G++   RAENL+I D+ R+ N L DN
Sbjct: 246 ALGVDLTARAENLTIADYVRLANWLHDN 273


>gi|34495576|ref|NP_899791.1| dimethyladenosine transferase [Chromobacterium violaceum ATCC
           12472]
 gi|88911348|sp|Q7P1U1|RSMA_CHRVO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|34101431|gb|AAQ57800.1| dimethyladenosine transferase [Chromobacterium violaceum ATCC
           12472]
          Length = 262

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/267 (37%), Positives = 144/267 (53%), Gaps = 18/267 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQNFL D +++  I  +        VIEIG G G +T+ LL  L    V+ I
Sbjct: 3   KHIPRKRFGQNFLQDASVIAGIVHAVNPQPDDIVIEIGPGLGAITKPLLARLKHLHVVEI 62

Query: 77  EKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           ++D     I++ + ++HP ++L I   DAL  DF       +P++I+ NLPYNI T LLF
Sbjct: 63  DRD-----IIERLKAEHPADKLTIHAGDALAFDFASVS--EAPLKIVGNLPYNISTPLLF 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +  S          +  + QKEV ER+ A+ ++  YGRL+V+  +R     +  + P  F
Sbjct: 116 HLASYGNR---VTDMHFMLQKEVIERMVAEPSTADYGRLTVMLQYRFYMENILFVPPEAF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES----LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           +P PKV S V+  IP   P  C        L+K+  +AF +RRKTLR +LK L     L 
Sbjct: 173 WPPPKVDSAVVRMIP--APGRCGTARDEALLEKLVSQAFAQRRKTLRNNLKGLADAADLE 230

Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278
             GI+  LR ENL +EDF R+ N L D
Sbjct: 231 ALGIDPGLRPENLPVEDFVRLANHLHD 257


>gi|226947305|ref|YP_002802396.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto]
 gi|259494243|sp|C1FQ40|RSMA_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226840947|gb|ACO83613.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto]
          Length = 275

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/276 (36%), Positives = 155/276 (56%), Gaps = 14/276 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   A
Sbjct: 4   KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLE-RA 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V  IE D    PIL++   ++ N   +I  DALK+DF +       I+++ANLPY + 
Sbjct: 63  KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYVT 121

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +   T    ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  +
Sbjct: 122 TPIISRLL---TEKCNFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKV 178

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244
           SP+ F P PKV S VI  +  L+     ++S K    + + +F  RRKTL  SLK L   
Sbjct: 179 SPNSFIPRPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIN 237

Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI++  R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 273


>gi|37524611|ref|NP_927955.1| dimethyladenosine transferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|62900562|sp|Q7N8V7|RSMA_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|36784035|emb|CAE12904.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 272

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 155/285 (54%), Gaps = 20/285 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  IA +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIAAAINPQPGQAVLEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPI 119
           +    +G R  K+ V+E D+     L+ +  Q  ++L IIQ DA+ V+F +       P+
Sbjct: 53  E---PVGERMDKMTVVELDRDLAARLQ-VHPQLKDKLTIIQQDAMTVNFGELSQQRGKPL 108

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A   S  +GRLSV+  
Sbjct: 109 RVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPGSKTFGRLSVMAQ 165

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237
           +  +   + ++ P  F P+PKV S V+  +PH + P P   +  L +IT +AF +RRKT+
Sbjct: 166 YYCQVIPVLEVPPTAFTPAPKVDSAVVRLVPHKSIPHPVKNIRMLSRITTQAFNQRRKTI 225

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           R SL  L     L + GI+ + RAEN+S+E +C++ N L++  ++
Sbjct: 226 RNSLGDLFTVEQLTELGIDPSTRAENISVEQYCKMANWLSEQPEM 270


>gi|88606758|ref|YP_505210.1| dimethyladenosine transferase [Anaplasma phagocytophilum HZ]
 gi|122064279|sp|Q2GK91|RSMA_ANAPZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|88597821|gb|ABD43291.1| dimethyladenosine transferase [Anaplasma phagocytophilum HZ]
          Length = 269

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 141/258 (54%), Gaps = 8/258 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ F+LD  I +KI   +G L+   VIE+G G G +TQ +L    R++  IEKD++
Sbjct: 9   KKSLGQCFILDPAIAEKIVSYAGCLEQYNVIEVGPGLGIMTQSILNKEVRRLTAIEKDRR 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              I   +   H    + I +D L V+ E+  +  SP+++I+NLPYNI   LL   +   
Sbjct: 69  LSNIHSKLKEAHA-EYDCIFEDILDVNIEQLLS-QSPLKMISNLPYNISVILLLKLLP-- 124

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +   +E L L+FQKEV +RI AQ N+  Y  LS+L         + D  P +F PSPKV
Sbjct: 125 -YIHRFEKLILMFQKEVADRIVAQPNTKSYSILSILVQLLCDVRKVEDFPPEIFSPSPKV 183

Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETN 258
            S+VI   P L+P      S   ++ ++ F  RRKT+R SLK      + L     I+ N
Sbjct: 184 YSSVIEITPLLSPRFSVDNSYFAQVLKKLFHCRRKTIRNSLKSCIKDADALFIGCNIDPN 243

Query: 259 LRAENLSIEDFCRITNIL 276
            RAE+L+IE  C +TN L
Sbjct: 244 ARAESLTIEQLCSLTNAL 261


>gi|330830999|ref|YP_004393951.1| ribosomal RNA small subunit methyltransferase A [Aeromonas veronii
           B565]
 gi|328806135|gb|AEB51334.1| Ribosomal RNA small subunit methyltransferase A [Aeromonas veronii
           B565]
          Length = 264

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/266 (36%), Positives = 141/266 (53%), Gaps = 16/266 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ +I  +     G  ++EIG G   LT+ +      K+ V+E D+ 
Sbjct: 6   RKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALTEPVAA-QMDKMTVVELDRD 64

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNW 137
               L+    +HP   ++L +I+ DA++ DF         P+RI  NLPYNI T L+F+ 
Sbjct: 65  LAARLR----EHPTLKDKLTVIEADAMRFDFGTLMGEGKGPLRIFGNLPYNISTPLIFHL 120

Query: 138 IS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              AD      E +  + QKEV  R+ A   S  YGRLSV+T +  +   + ++ P  F 
Sbjct: 121 CEFADRV----EDMHFMLQKEVVLRLAAGPGSKAYGRLSVMTQYYCQVVPVLEVGPGAFK 176

Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P+PKV S V+  IPH NP  +   +  L ++  E FG+RRKT+R S      +  L + G
Sbjct: 177 PAPKVDSAVVRLIPHKNPTIVAKDIRCLNRVCTEGFGQRRKTIRNSFSNFITDAQLTELG 236

Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280
           I+ NLR ENLS+E F  I N L D Q
Sbjct: 237 IDGNLRPENLSLEQFVMIANWLADQQ 262


>gi|16763480|ref|NP_459095.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|20141600|sp|Q56016|RSMA_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|16418587|gb|AAL19054.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase;
           kasugamycin resistance [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|312911060|dbj|BAJ35034.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 273

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+ ++F E    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKEYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N
Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267


>gi|307824413|ref|ZP_07654638.1| dimethyladenosine transferase [Methylobacter tundripaludum SV96]
 gi|307734397|gb|EFO05249.1| dimethyladenosine transferase [Methylobacter tundripaludum SV96]
          Length = 282

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 32/284 (11%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQNFL D NI+  I  S  +  G   +EIG G G LT+ LL  G R + V+E D+
Sbjct: 5   PRKRFGQNFLHDHNIIYNIISSIQARPGQHWVEIGPGQGALTEPLLNEGVR-LDVVELDR 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-----------------------FNISS 117
               +L++   Q+PN L+I   DAL+ DF                               
Sbjct: 64  DLVVLLREKFKQYPN-LQIHSADALRFDFSSLAAGGXXXXXXXXARKAPEGARAGIARDE 122

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            +R+I NLPYNI T L+F+ +         E +  + QKEV +RI A   S  YGRLSV+
Sbjct: 123 KLRVIGNLPYNISTPLMFHLLDNAYC---IEDMHFMLQKEVVDRICAAPGSKKYGRLSVM 179

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRR 234
             +     ++FD+ P  F P+P+V S ++  +PH  P P     +  L ++  +AF +RR
Sbjct: 180 MQYYCATELLFDVPPESFDPAPQVMSAIVRLVPHQQP-PVAVNDMSKLNRVVTQAFSQRR 238

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTLR SLK+L  E  +   GI+  LRAE++S+ +F R++N+L +
Sbjct: 239 KTLRNSLKKLITEEEIVALGIDPTLRAESISLAEFARLSNLLQE 282


>gi|154707299|ref|YP_001425385.1| dimethyladenosine transferase [Coxiella burnetii Dugway 5J108-111]
 gi|226729774|sp|A9KGZ8|RSMA_COXBN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|154356585|gb|ABS78047.1| dimethyladenosine transferase [Coxiella burnetii Dugway 5J108-111]
          Length = 258

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 139/257 (54%), Gaps = 8/257 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+FL D  +L+KI  +       T++EIG G G LT  LLT     + ++E D  
Sbjct: 7   RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLT-ECDNLALVEIDGD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   +Q  N + I Q+DAL+ DF        P+R++ NLPYNI T LLF+  S  
Sbjct: 66  LVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHLFSQI 123

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 E +  + QKEV  RITA+  S  YGRLSV+  +    T +F +SP  F P P+V
Sbjct: 124 HC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRV 180

Query: 202 TSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S +I  IP  N  P+   L+ L  + +EAF  RRKT+  +LK+L   +      I   L
Sbjct: 181 ESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL 240

Query: 260 RAENLSIEDFCRITNIL 276
           R + L++EDF +I+NIL
Sbjct: 241 RPQELTVEDFVKISNIL 257


>gi|118600894|sp|Q4UMV1|RSMA_RICFE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 239

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 132/231 (57%), Gaps = 7/231 (3%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           + ++I P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L      + 
Sbjct: 10  ASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQKNPASLT 69

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE D++  P+L +I   +PN L II+ DALK++          + II+NLPY+IGT L+
Sbjct: 70  VIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLG--YDKVTIISNLPYHIGTELV 126

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
             W+          ++TL+ QKEV ERI A  ++  YGRLSV+    TK    FD++P  
Sbjct: 127 IRWLKEAR---LITNMTLMLQKEVVERICAMPSTKAYGRLSVICQLITKVEKCFDVAPTA 183

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL 244
           F+P PKV S ++  IP  NP    L   +++IT+ AF  RRK ++ SLK L
Sbjct: 184 FYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKNL 234


>gi|311696169|gb|ADP99042.1| dimethyladenosine transferase [marine bacterium HP15]
          Length = 276

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 142/257 (55%), Gaps = 8/257 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++++I  +        ++EIG G G LT+ +L +   K+ V+E D+ 
Sbjct: 10  RKRFGQNFLHDPGVIEQIIRAINPKPDDAIVEIGPGLGALTEEILAVNP-KLQVVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P+L+     +P    I + DALK DF +   +  P+RII NLPYNI T L+F+ +S  
Sbjct: 69  LIPVLRTKFFNYPE-FRIHEADALKFDFSQLM-VDRPLRIIGNLPYNISTPLIFHLLSQA 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +R+ A     +YGRL ++T +  +   +F++ P  F P+PKV
Sbjct: 127 G---VVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCRVQPLFEVGPGAFRPAPKV 183

Query: 202 TSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++  +PH   P P   L +L+ + + AF  RRKTLR++L  +     L   GI   L
Sbjct: 184 DSAIVRLVPHKTLPHPAKDLTTLQAVVRTAFNARRKTLRKALGGMVSAEQLRSLGINDGL 243

Query: 260 RAENLSIEDFCRITNIL 276
           R ENL++ DF  I ++L
Sbjct: 244 RPENLALADFVAIADLL 260


>gi|194446536|ref|YP_002039320.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|226732621|sp|B4T6L6|RSMA_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|194405199|gb|ACF65421.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 273

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+ ++F E    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N
Sbjct: 223 KTIRNSLDNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267


>gi|300724851|ref|YP_003714176.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Xenorhabdus nematophila ATCC 19061]
 gi|297631393|emb|CBJ92090.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Xenorhabdus nematophila ATCC
           19061]
          Length = 269

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/290 (35%), Positives = 154/290 (53%), Gaps = 32/290 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNNK H       H+    +K  GQNFL D  I+  I ++     G  V+EIG G G LT
Sbjct: 1   MNNKVHQ-----GHHA---RKRFGQNFLTDQFIIHSIVDAMNPQIGQAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQ---HP---NRLEIIQDDALKVDFEKFF- 113
           +    +G R  K+ V+E D       +D++++   HP   ++L IIQ DA+ VDF +   
Sbjct: 53  E---PVGERMDKMTVVELD-------RDLAARLHVHPKLKDKLTIIQQDAMTVDFGQIAK 102

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +RI  NLPYNI T L+F+  S   +      ++ + QKEV  R+ A   S  YGR
Sbjct: 103 ERGQSLRIFGNLPYNISTPLMFHLFS---YTDAIADMSFMLQKEVVNRLVAGPGSKAYGR 159

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           LSV+  +  +   + ++ P  F P+PKV S V+  IPH   P P   +  L +IT +AF 
Sbjct: 160 LSVMAQYYCQVIPVLEVPPTAFTPAPKVDSAVVRLIPHKTIPHPVHDIRILARITTQAFN 219

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           +RRKT+R SL  +     L + G++   RAEN+S+E +C++ N L+   +
Sbjct: 220 QRRKTIRNSLSHIFSVEQLSELGVDPGTRAENISVEQYCKMANWLSSQSE 269


>gi|290474828|ref|YP_003467708.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Xenorhabdus bovienii SS-2004]
 gi|289174141|emb|CBJ80928.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Xenorhabdus bovienii SS-2004]
          Length = 274

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 155/292 (53%), Gaps = 32/292 (10%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNNK H       HY    +K  GQNFL D  I++ I ++     G  ++EIG G G LT
Sbjct: 1   MNNKVHQ-----GHYA---RKRFGQNFLTDQFIIESIVDAMNPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQ---HP---NRLEIIQDDALKVDFEKFF- 113
           +    +G R  K+ V+E D       +D++++   HP   ++L IIQ DA+ VDF +   
Sbjct: 53  E---PVGERMDKMTVVELD-------RDLAARLHVHPKLKDKLTIIQQDAMTVDFGQLAK 102

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
           +    +R+  NLPYNI T L+F+  S   +      ++ + QKEV  R+ A      YGR
Sbjct: 103 DQGQSLRVFGNLPYNISTPLMFHLFS---YADAIADMSFMLQKEVVNRLVAGPGCKAYGR 159

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFG 231
           LSV+  +  +   + ++ P  F P+PKV S ++  +PH   P P   +  L ++T +AF 
Sbjct: 160 LSVMAQYYCQVIPVLEVPPTAFTPAPKVDSAIVRLMPHKAMPYPVKDIRMLARVTTQAFN 219

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           +RRKT+R SL  L     L + G++   RAEN+S+E +C++ + L+     A
Sbjct: 220 QRRKTIRNSLGDLFSVEQLSELGVDPGTRAENISVEQYCKMASWLSSQAKTA 271


>gi|148378088|ref|YP_001252629.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
           3502]
 gi|148287572|emb|CAL81637.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
           3502]
          Length = 278

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/284 (36%), Positives = 158/284 (55%), Gaps = 16/284 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN   + K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT
Sbjct: 1   MNN--MNTKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLT 58

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A++V  IE D    PIL++   ++ N   +I  DALK+DF +       I+++
Sbjct: 59  KELLE-RAKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLV 116

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   +   T    ++SLT++ QKEV ERI A+ N   YG L+VL  +  
Sbjct: 117 ANLPYYVTTPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYC 173

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQ 239
              ++  +SP+ F P PKV S VI  +  L+     ++S K    + + +F  RRKTL  
Sbjct: 174 NTKIIRKVSPNSFIPRPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWN 232

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           SLK L       EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 233 SLKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 276


>gi|157147529|ref|YP_001454848.1| dimethyladenosine transferase [Citrobacter koseri ATCC BAA-895]
 gi|166221659|sp|A8ALP9|RSMA_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157084734|gb|ABV14412.1| hypothetical protein CKO_03329 [Citrobacter koseri ATCC BAA-895]
          Length = 273

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 150/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+ ++F +    I 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSEKIG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L + GI+  LRAEN+S+  +C++ N L++N
Sbjct: 223 KTIRNSLGNLFSVEVLTELGIDPALRAENISVAQYCQMANYLSEN 267


>gi|16759085|ref|NP_454702.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140635|ref|NP_803977.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412361|ref|YP_149436.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161612426|ref|YP_001586391.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167550727|ref|ZP_02344484.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167989953|ref|ZP_02571053.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168230359|ref|ZP_02655417.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168243503|ref|ZP_02668435.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262232|ref|ZP_02684205.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168820928|ref|ZP_02832928.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194450226|ref|YP_002044058.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470287|ref|ZP_03076271.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197249198|ref|YP_002145074.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263010|ref|ZP_03163084.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197361298|ref|YP_002140933.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198244097|ref|YP_002214042.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200389272|ref|ZP_03215884.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204926662|ref|ZP_03217864.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205351430|ref|YP_002225231.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207855603|ref|YP_002242254.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213161029|ref|ZP_03346739.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427533|ref|ZP_03360283.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213648900|ref|ZP_03378953.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|224581932|ref|YP_002635730.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238911148|ref|ZP_04654985.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289826183|ref|ZP_06545295.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|27151585|sp|Q8Z9J7|RSMA_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900478|sp|Q5PDD9|RSMA_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028815|sp|A9MYM4|RSMA_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732616|sp|B5F771|RSMA_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732617|sp|B5FI34|RSMA_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732618|sp|B5R1S8|RSMA_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732619|sp|B5RGC2|RSMA_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732620|sp|B4TJ47|RSMA_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732622|sp|B5BL27|RSMA_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807882|sp|C0Q5E7|RSMA_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|25286076|pir||AF0513 dimethyladenosine transferase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501375|emb|CAD01246.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136259|gb|AAO67826.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126618|gb|AAV76124.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161361790|gb|ABX65558.1| hypothetical protein SPAB_00115 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408530|gb|ACF68749.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194456651|gb|EDX45490.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197092773|emb|CAR58198.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197212901|gb|ACH50298.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197241265|gb|EDY23885.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197938613|gb|ACH75946.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199606370|gb|EDZ04915.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204323327|gb|EDZ08522.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205271211|emb|CAR35999.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205324333|gb|EDZ12172.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205331535|gb|EDZ18299.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205335041|gb|EDZ21805.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337400|gb|EDZ24164.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205342515|gb|EDZ29279.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348868|gb|EDZ35499.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206707406|emb|CAR31679.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224466459|gb|ACN44289.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261245323|emb|CBG23111.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991761|gb|ACY86646.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301156719|emb|CBW16193.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320084328|emb|CBY94121.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222340|gb|EFX47412.1| Dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615911|gb|EFY12828.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620696|gb|EFY17556.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623953|gb|EFY20790.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627401|gb|EFY24192.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630708|gb|EFY27472.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638072|gb|EFY34773.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640558|gb|EFY37209.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647698|gb|EFY44183.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648048|gb|EFY44515.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656920|gb|EFY53206.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657369|gb|EFY53641.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663689|gb|EFY59889.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666522|gb|EFY62700.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672319|gb|EFY68431.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676369|gb|EFY72440.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679538|gb|EFY75583.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686133|gb|EFY82117.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323128408|gb|ADX15838.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194977|gb|EFZ80163.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200114|gb|EFZ85201.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201065|gb|EFZ86134.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209462|gb|EFZ94395.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212286|gb|EFZ97110.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216591|gb|EGA01317.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222470|gb|EGA06840.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225781|gb|EGA10001.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228678|gb|EGA12807.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236708|gb|EGA20784.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239791|gb|EGA23838.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242161|gb|EGA26190.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249414|gb|EGA33330.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252251|gb|EGA36102.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256658|gb|EGA40388.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323261308|gb|EGA44895.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265512|gb|EGA49008.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271700|gb|EGA55118.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
 gi|326621786|gb|EGE28131.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326626453|gb|EGE32796.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332987042|gb|AEF06025.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 273

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+ ++F E    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N
Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267


>gi|168464366|ref|ZP_02698269.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195632741|gb|EDX51195.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 273

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+ ++F E    + 
Sbjct: 53  E---PVGERLDKLTVIELDRALAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N
Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267


>gi|122095936|sp|Q1A705|TFB1M_HARVE RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|83032436|gb|ABB97064.1| mitochondrial transcription factor B-like protein [Hartmannella
           vermiformis]
          Length = 343

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 150/302 (49%), Gaps = 53/302 (17%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+ + QNFLLDLNI  KI  SSG L   TVIE+G GPG LT+ +L  GA+K++VIEKD++
Sbjct: 23  KQQLSQNFLLDLNITDKIVRSSGDLTNKTVIEVGPGPGGLTRSILKAGAKKLVVIEKDRR 82

Query: 82  FFPIL---------------------------KDISSQHPN--RLEIIQDDALKVDFEKF 112
           F P L                           K   S  PN  R++I+ +D L+VD ++ 
Sbjct: 83  FLPALEVLRHAAGNIDGSPWEEAFLTKSEMDAKRYMSYAPNKSRMQIVMNDVLRVDEQEI 142

Query: 113 FN-----ISS----------PIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTL 152
                  I S          PI II NLP+ I T L   W+         +        L
Sbjct: 143 LQHIHAPIDSNDKTQWENMAPITIIGNLPFAISTELTIKWLKQIQGRHGAFRFGRAEFIL 202

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           +FQKEV +R+ A   +  Y RL+V+T        + DI    F P P V ++++  +P +
Sbjct: 203 MFQKEVADRLIANPGTKQYSRLTVMTQQLCSVKKLSDIPGSAFVPKPDVDASLVSMVPRV 262

Query: 213 NPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGIETNLRAENLSIED 268
            P+   +   +L+ + ++ FG+RRK +  S+K LG   E LL +A I+  LR E L++  
Sbjct: 263 TPLGVNVPTPTLEYVCRQVFGQRRKMINNSVKTLGPEAEILLARAHIDPTLRPEQLTVPQ 322

Query: 269 FC 270
           +C
Sbjct: 323 WC 324


>gi|94499972|ref|ZP_01306507.1| dimethyladenosine transferase [Oceanobacter sp. RED65]
 gi|94427830|gb|EAT12805.1| dimethyladenosine transferase [Oceanobacter sp. RED65]
          Length = 266

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 143/263 (54%), Gaps = 7/263 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D N+++ I +S     G  ++EIG G G +T+ LL     ++ V+E D+ 
Sbjct: 6   RKRFGQNFLHDPNVIRNIVKSIRPKVGDRIVEIGPGMGAITEELLDATEGELDVVELDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISA 140
             P LK     H     I + DALK DF          +RI+ NLPYNI T L+F+ +S 
Sbjct: 66  LIPGLKVKFFNHKG-FRIHESDALKFDFATLKQAPEEQLRIVGNLPYNISTPLIFHLLS- 123

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             +    + +  + QKEV +R+ A     +YGRLS++  +  +   MFD+ P  F P+PK
Sbjct: 124 --YSGLVKDMHFMLQKEVVQRLAAGPGDNNYGRLSIMAQYYCQVQHMFDVGPGAFKPAPK 181

Query: 201 VTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S ++  +PH + P P    ++ ++I +E+F  RRKTLR +LK+      L + GI+  
Sbjct: 182 VDSAIVRMVPHQDLPYPVKDHKTFERIVRESFAMRRKTLRNNLKKTISSEELEKLGIDPA 241

Query: 259 LRAENLSIEDFCRITNILTDNQD 281
           LR E L + ++ RI + + +  D
Sbjct: 242 LRPERLGLPEYTRIADYIYERAD 264


>gi|325276041|ref|ZP_08141856.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas sp. TJI-51]
 gi|324098826|gb|EGB96857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas sp. TJI-51]
          Length = 267

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 145/265 (54%), Gaps = 7/265 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  I+ +I  +  +  G  ++EIG G G LT+ LL  GA ++ V+
Sbjct: 5   YQHRARKRFGQNFLHDAGIIDRILRAIHAKPGEHLLEIGPGQGALTEGLLGSGA-QLDVV 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   PIL+   +   N   + Q DALK DF +       ++++ NLPYNI T L+F+
Sbjct: 64  ELDKDLVPILQHKFADRSN-FRLHQGDALKFDFNRLGVPPRSLKVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++  +PH + P P    + L+++ ++AF +RRKTLR ++K L     +  AG
Sbjct: 180 PPPKVDSAIVRLVPHEVLPHPAKDAQLLERVVRDAFNQRRKTLRNTMKGLLDSAAIEAAG 239

Query: 255 IETNLRAENLSIEDFCRITNILTDN 279
           ++ +LR E L +  F R+ + L D 
Sbjct: 240 VDGSLRPEQLDLAAFVRLADQLADQ 264


>gi|168234845|ref|ZP_02659903.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734867|ref|YP_002113107.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|226732623|sp|B4TWT6|RSMA_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|194710369|gb|ACF89590.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291958|gb|EDY31308.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 273

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+ ++F E    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSTQLG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N
Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267


>gi|225181539|ref|ZP_03734981.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
 gi|225167787|gb|EEG76596.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
          Length = 296

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 149/272 (54%), Gaps = 13/272 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  + +  KK  GQNFL+D NILKKI  ++       ++EIG G G+LTQ L    A +
Sbjct: 23  LLEQHGVKLKKKWGQNFLVDENILKKIISAADVQKSDRILEIGPGIGSLTQKLAE-NASR 81

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V+ +E D +  P+L++  +++ N +EII  DA+  D         P++++ANLPYN+ T 
Sbjct: 82  VLTVEIDTRLIPVLRETLAEYDN-VEIIHGDAMDFDPAPVCE-EGPVKLVANLPYNVATP 139

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           LL+ W+  D+   F   L  + QKEV ERI A+  S  YG LSV+  +  +  + FD+  
Sbjct: 140 LLYRWLK-DSRNCF-SRLVCMVQKEVAERIVAKPGSKAYGTLSVICNYAARCEIAFDVPR 197

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR---LGGE 247
            VFFP P V+S V+  IP+  P     +     K+ +  F +RRKTL  +L     L  E
Sbjct: 198 TVFFPRPDVSSAVVQLIPYHVPAEDVADDAFFFKVVEAVFAQRRKTLLNTLNAAFPLTKE 257

Query: 248 NL---LHQAGIETNLRAENLSIEDFCRITNIL 276
            L        I+ + R E L++++F +++ +L
Sbjct: 258 QLTAVCSAVEIDLSRRGETLTLQEFAKLSRVL 289


>gi|283783840|ref|YP_003363705.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl (rRNA)
           dimethyltransferase) [Citrobacter rodentium ICC168]
 gi|282947294|emb|CBG86839.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl (rRNA)
           dimethyltransferase) [Citrobacter rodentium ICC168]
          Length = 273

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 148/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+ ++F +    + 
Sbjct: 53  E---PVGERLDRLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L + G++  +RAEN+S+  +CR+ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTELGVDPAMRAENISVAQYCRMANYLAEN 267


>gi|91762164|ref|ZP_01264129.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717966|gb|EAS84616.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 262

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/264 (36%), Positives = 149/264 (56%), Gaps = 11/264 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK +GQNFL+D  +L+KI  S   +    V+EIG G GNLT  +L    +K+ V+EK
Sbjct: 3   IKAKKSLGQNFLIDREVLEKIV-SITDITNKEVLEIGPGSGNLTTYILKKKPKKLYVVEK 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     +LK+   +    ++II DD LKV      +    + +  NLPYNI T +L  WI
Sbjct: 62  DDDLAILLKE---KFDTEIKIINDDILKVSESTISD--QKLSVFGNLPYNISTEILSKWI 116

Query: 139 SADTWPPFW-ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
             +    FW +SL L+FQKEV +RI ++ N+ +YGRLS+L+ W+     + DI P  F P
Sbjct: 117 -LNIGSNFWFDSLVLMFQKEVADRIISKFNNSNYGRLSILSSWKLNVKKILDIKPQSFSP 175

Query: 198 SPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254
            PK+ S+++ F P  N       ++L+KIT+  F +RRK L++   ++   G+ +  + G
Sbjct: 176 RPKIDSSLLLFTPKENFFKLKDPKNLEKITRIFFSQRRKMLKKPFNQVFDNGKEVAEKFG 235

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           I+ NLR +NL  E + ++     D
Sbjct: 236 IDLNLRPQNLEPEVYFKLVKEYED 259


>gi|322514872|ref|ZP_08067890.1| dimethyladenosine transferase [Actinobacillus ureae ATCC 25976]
 gi|322119176|gb|EFX91321.1| dimethyladenosine transferase [Actinobacillus ureae ATCC 25976]
          Length = 289

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/268 (36%), Positives = 147/268 (54%), Gaps = 18/268 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D+N++  I  +    +G  ++EIG G G LT+ +      K+ V+E D+ 
Sbjct: 15  RKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAE-QVDKLTVVELDRD 73

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-----NISSPIRIIANLPYNIGTRL 133
               L+     HP   ++L II+ DAL+ +F ++F     N S  IR+  NLPYNI T L
Sbjct: 74  LAGRLR----HHPFLNHKLTIIEQDALRFNFREYFESLELNESEGIRVFGNLPYNISTPL 129

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+      +    + +  + QKEV +R+ A  NS  YGRL+++  +  +   + ++ P 
Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVIPVLEVPPT 186

Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P+PKV S V+  +PH + P P   +  L  +T +AF +RRKTLR +L  L     L 
Sbjct: 187 AFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNCVTTQAFNQRRKTLRNALSTLFSPEQLE 246

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
              I+ N RAENLSI D+ R+ N L DN
Sbjct: 247 ALNIDLNARAENLSIADYARLANWLYDN 274


>gi|85058402|ref|YP_454104.1| dimethyladenosine transferase [Sodalis glossinidius str.
           'morsitans']
 gi|119365845|sp|Q2NVX6|RSMA_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|84778922|dbj|BAE73699.1| dimethyladenosine transferase [Sodalis glossinidius str.
           'morsitans']
          Length = 272

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 146/282 (51%), Gaps = 22/282 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D +I+  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLHDSSIIDAIVAAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKF-FNISSP 118
           + +      ++ VIE D+     L    + HP   ++L I+Q DA+ VDF         P
Sbjct: 53  EPVAE-RVDEMTVIELDRDLAARL----ASHPFLQSKLNIVQKDAMTVDFAALSAERGQP 107

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           +R+  NLPYNI T L+F+  S   +      +  + QKEV  R+    N   YGRLSV+ 
Sbjct: 108 LRVFGNLPYNISTPLMFHLFS---YTHAIRDMHFMLQKEVVNRLVDGPNGKAYGRLSVMA 164

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKT 236
            +  +   + ++ P  F P+PKV S V+  +P+   P P   L  L  +T  AF +RRKT
Sbjct: 165 QYYCQIIPVLEVPPASFRPAPKVDSAVVRLVPYATLPFPVKDLSKLATLTSLAFNQRRKT 224

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LR SL  L     L + GI+  LRAEN+S+E +CR+ N+L +
Sbjct: 225 LRNSLGNLFSAQQLAEQGIDATLRAENVSVELYCRLANVLAE 266


>gi|300310043|ref|YP_003774135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Herbaspirillum seropedicae SmR1]
 gi|300072828|gb|ADJ62227.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           protein [Herbaspirillum seropedicae SmR1]
          Length = 260

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/267 (36%), Positives = 137/267 (51%), Gaps = 13/267 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D  +L  I  S        ++EIG G   +T +LL  G R + V+E
Sbjct: 2   KHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLE-GLRHLHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLPYNIGTRL 133
            D+     LK        RL +   DALK DF     I  P    +R++ NLPYNI + L
Sbjct: 61  LDRDLVERLKKRFDA--ARLTVHSADALKFDFS---TIPVPEGRKLRVVGNLPYNISSPL 115

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+   A+  P   +    + QKEV ER+ A+  S  YGRLSV+  WR    ++F + P 
Sbjct: 116 LFHL--AEIAPQVQDQ-HFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPT 172

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P PKV S ++  IP   P+ C    L+++  +AF +RRK +R  +  L  E+ L Q 
Sbjct: 173 AFDPPPKVDSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQV 232

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+   R E + +E F  + N+L   Q
Sbjct: 233 GIDPQARPEAVPMEQFVALANLLAARQ 259


>gi|271502083|ref|YP_003335109.1| dimethyladenosine transferase [Dickeya dadantii Ech586]
 gi|270345638|gb|ACZ78403.1| dimethyladenosine transferase [Dickeya dadantii Ech586]
          Length = 272

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 145/286 (50%), Gaps = 32/286 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPQPGQAMVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
              + +G R  +  V+E D+      +  P LKD       +L IIQ DA+ VDF     
Sbjct: 53  ---IPVGERINRFTVVELDRDLAARLEVHPTLKD-------KLTIIQQDAMTVDFAALSQ 102

Query: 115 -ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGR
Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLFS---YTQAIHDMHFMLQKEVVNRLVAGPNSKAYGR 159

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFG 231
           LSV+  +  +   + ++ P  F P+PKV S V+  +PH  +P P      L +IT EAF 
Sbjct: 160 LSVMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTASPYPAVDTRILSRITTEAFN 219

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +RRKTLR SL  L     L    ++ N RAEN++I  +CR+   LT
Sbjct: 220 QRRKTLRNSLGNLFTPEQLTALEVDPNTRAENVTIAQYCRLAEWLT 265


>gi|70727517|ref|YP_254433.1| dimethyladenosine transferase [Staphylococcus haemolyticus
           JCSC1435]
 gi|119365848|sp|Q4L3F0|RSMA_STAHJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|68448243|dbj|BAE05827.1| ksgA [Staphylococcus haemolyticus JCSC1435]
          Length = 296

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/277 (35%), Positives = 149/277 (53%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK +GQNFL+D+NI+ KI ++S   D   +IE+G G G+LT+ L    A
Sbjct: 13  KALLDQFGFNFKKSLGQNFLVDVNIIHKIIDASEIDDNTGIIEVGPGMGSLTEQLAK-RA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
           +KV+  E DQ+  P+LK+  + + N + II +D LK D  K    + N    I ++ANLP
Sbjct: 72  KKVMSFEIDQRLIPVLKETLAPYDN-VTIINEDILKADIGKAVKTYLNDCDKIMVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ AQ  +  YG LS++T + T+ + 
Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAQVGTKAYGSLSIVTQYYTETSK 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 188 VLTVPKSVFMPPPNVDSIVVKLMQRETPLVSVDDEETFFKLAKAAFAQRRKTINNNYQNF 247

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         Q GI+   R E LSI+DF R+
Sbjct: 248 FKDGKKHKESILKWLEQTGIDPKRRGETLSIQDFARL 284


>gi|104773499|ref|YP_618479.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513494|ref|YP_812400.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|118600873|sp|Q1GBR1|RSMA_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122275736|sp|Q04C60|RSMA_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|103422580|emb|CAI97183.1| Dimethyladenosine transferase (16S rRNA dimethylase) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092809|gb|ABJ57962.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 296

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 147/283 (51%), Gaps = 20/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            I++ Y +  KK +GQNFL+DL+ ++ I  ++G   G  V+E+G G G+LT+ LL  G  
Sbjct: 15  AIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGG- 73

Query: 72  KVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIRI 121
           KV   E DQ    IL +     +  Q    R ++I  D LK DF      FF++S P+++
Sbjct: 74  KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKV 133

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++FN + +      + SLTL+ QKEV ER+ AQ  S  YG LS+    +
Sbjct: 134 VANLPYYITTPIIFNLLESSLD---FTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQ 190

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240
               +  ++    F P PKV S V+   P   P      +   ++ +  F +RRKTL  +
Sbjct: 191 MSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANN 250

Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK L       E LL    ++   R E L+I DF RI+  + +
Sbjct: 251 LKTLLPDKEDREKLLADLDLDPRQRPEQLAISDFIRISQAIAE 293


>gi|153940692|ref|YP_001389445.1| dimethyladenosine transferase [Clostridium botulinum F str.
           Langeland]
 gi|259494245|sp|A7G9I5|RSMA_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|152936588|gb|ABS42086.1| dimethyladenosine transferase [Clostridium botulinum F str.
           Langeland]
 gi|295317550|gb|ADF97927.1| dimethyladenosine transferase [Clostridium botulinum F str. 230613]
          Length = 275

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/276 (36%), Positives = 154/276 (55%), Gaps = 14/276 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   A
Sbjct: 4   KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLE-RA 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V  IE D    PIL++   ++ N   +I  DALK+DF +       I+++ANLPY + 
Sbjct: 63  KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKESIKLVANLPYYVT 121

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +   T    ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  +
Sbjct: 122 TPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKV 178

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244
           SP+ F P PKV S VI  +  L+     ++S K    + + +F  RRKTL  SLK L   
Sbjct: 179 SPNSFIPRPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237

Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273


>gi|317046866|ref|YP_004114514.1| dimethyladenosine transferase [Pantoea sp. At-9b]
 gi|316948483|gb|ADU67958.1| dimethyladenosine transferase [Pantoea sp. At-9b]
          Length = 274

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 147/286 (51%), Gaps = 26/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       HY    +K  GQNFL D  I+  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHYA---RKRFGQNFLNDQYIIDSIVSAIHPQKGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116
           +    +G R  ++ V+E D+     L+     HP    +L I Q DA+  DF        
Sbjct: 53  E---PVGERLDELTVVELDRDLAARLQT----HPFLGPKLTIFQQDAMTFDFSALAREKG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   S  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +P+  P  P   +  L +IT EAFG+RR
Sbjct: 163 MAQYYCQVIPVLEVPPQSFTPPPKVDSAVVRLVPYAQPQHPVSDVRLLSRITTEAFGQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTLR SL  L     L    I+ +LRAEN+S+  +C++ N L ++Q
Sbjct: 223 KTLRNSLGHLFAAGALDALNIDASLRAENVSVAQYCQLANWLGNHQ 268


>gi|294634975|ref|ZP_06713492.1| dimethyladenosine transferase [Edwardsiella tarda ATCC 23685]
 gi|291091574|gb|EFE24135.1| dimethyladenosine transferase [Edwardsiella tarda ATCC 23685]
          Length = 271

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/271 (36%), Positives = 142/271 (52%), Gaps = 16/271 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   + +K  GQNFL D  ++  I  +     G  V+EIG G G LT+ +      K+ V
Sbjct: 6   HQGHLARKRFGQNFLTDQFVIDSIVSAINPQPGQAVVEIGPGLGALTEPVADR-MDKMTV 64

Query: 76  IEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGT 131
           IE D+     L +  S HP    +L I Q DA+ VDF E       P+R+  NLPYNI T
Sbjct: 65  IELDRD----LAERLSTHPFISRKLTIRQQDAMSVDFGEMAREAGQPLRVFGNLPYNIST 120

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L+F+  S   +      +  + QKEV  R+ A  +S  YGRLSV+  +  +   + ++ 
Sbjct: 121 PLMFHLFS---YASAIGDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVIPVLEVP 177

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGEN 248
           P  F P+PKV S V+  IPH   +P  +     L +IT EAF +RRKT+R SL  L    
Sbjct: 178 PSAFRPAPKVDSAVVRLIPHRE-LPHSVSDVRVLSRITTEAFNQRRKTIRNSLGHLFSAE 236

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            L + GI+   RAE LS+ ++CR+ N L ++
Sbjct: 237 QLSELGIDPARRAETLSVAEYCRLANWLCEH 267


>gi|254480940|ref|ZP_05094186.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2148]
 gi|214038735|gb|EEB79396.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2148]
          Length = 264

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 138/256 (53%), Gaps = 7/256 (2%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQNFL D +++  IA +  S +   ++EIG G G LT+ L++ G  ++ VIE D+
Sbjct: 10  PRKRFGQNFLTDDSVIGGIAGAIASRESDHIVEIGPGQGALTEALVSSGC-QLDVIELDR 68

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L    S H    ++   DALK DF    +    +RI+ NLPYNI T L+F  +  
Sbjct: 69  DLIAGLLAAFSIHKG-FKLHSADALKFDFSSLVDGDKKLRIVGNLPYNISTPLIFKLLEN 127

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  E +  + Q EV ER+ AQ  +  +GRL ++T ++ +   +FD+ P  F P PK
Sbjct: 128 AA---IIEDMHFMLQLEVVERLAAQPGNKTWGRLGIMTQYQCEVEHLFDVPPEAFNPPPK 184

Query: 201 VTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S ++   P+  +P P C    L+K+ Q AF +RRKTLR +LK L   + L   GI+  
Sbjct: 185 VQSAIVRLKPYQQSPWPACDGNQLRKVVQTAFAQRRKTLRNNLKGLINGDGLEALGIDPA 244

Query: 259 LRAENLSIEDFCRITN 274
            RAE L +  F  ITN
Sbjct: 245 ARAETLQLTQFITITN 260


>gi|156935428|ref|YP_001439344.1| dimethyladenosine transferase [Cronobacter sakazakii ATCC BAA-894]
 gi|166221663|sp|A7MIA7|RSMA_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|156533682|gb|ABU78508.1| hypothetical protein ESA_03287 [Cronobacter sakazakii ATCC BAA-894]
          Length = 273

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 150/286 (52%), Gaps = 28/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+ +DF +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMDFGELSQKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKR 233
           +  +  +   + ++ P  F P PKV S V+  +PH  P P  ++ L+   ++T EAF +R
Sbjct: 163 MAQYFCQVIPVLEVPPTAFTPPPKVDSAVVRLVPHATP-PHPVKELRLLSRLTTEAFNQR 221

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           RKT+R SL  +    +L   GI+  +RAEN+S+  +C++ N L DN
Sbjct: 222 RKTIRNSLGNVFSPEVLTSLGIDPAMRAENISVAQYCQMANYLADN 267


>gi|153931501|ref|YP_001382487.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
           19397]
 gi|153937047|ref|YP_001386039.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall]
 gi|259494241|sp|A7FQA9|RSMA_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|152927545|gb|ABS33045.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
           19397]
 gi|152932961|gb|ABS38460.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall]
 gi|322804353|emb|CBZ01903.1| dimethyladenosine transferase [Clostridium botulinum H04402 065]
          Length = 275

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/276 (36%), Positives = 154/276 (55%), Gaps = 14/276 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   A
Sbjct: 4   KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLE-RA 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V  IE D    PIL++   ++ N   +I  DALK+DF +       I+++ANLPY + 
Sbjct: 63  KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYVT 121

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +   T    ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  +
Sbjct: 122 TPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKV 178

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244
           SP+ F P PKV S VI  +  L+     ++S K    + + +F  RRKTL  SLK L   
Sbjct: 179 SPNSFIPRPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237

Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273


>gi|51594984|ref|YP_069175.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP
           32953]
 gi|153948384|ref|YP_001402399.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP
           31758]
 gi|170025788|ref|YP_001722293.1| dimethyladenosine transferase [Yersinia pseudotuberculosis YPIII]
 gi|186893985|ref|YP_001871097.1| dimethyladenosine transferase [Yersinia pseudotuberculosis PB1/+]
 gi|62900509|sp|Q66EQ8|RSMA_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166987698|sp|A7FMC1|RSMA_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732643|sp|B2K487|RSMA_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732645|sp|B1JKY3|RSMA_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|51588266|emb|CAH19873.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase;
           kasugamycin resistance [Yersinia pseudotuberculosis IP
           32953]
 gi|152959879|gb|ABS47340.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP
           31758]
 gi|169752322|gb|ACA69840.1| dimethyladenosine transferase [Yersinia pseudotuberculosis YPIII]
 gi|186697011|gb|ACC87640.1| dimethyladenosine transferase [Yersinia pseudotuberculosis PB1/+]
          Length = 272

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/283 (36%), Positives = 150/283 (53%), Gaps = 26/283 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116
           +    + AR   + VIE D+     L    + HP   ++L I Q DA+KV+F +      
Sbjct: 53  E---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAMKVNFSELSEQAG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P+PKV S V+  IPH+  P P   +  L +IT +AF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDVRMLSRITTQAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 223 KTVRNSLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 265


>gi|161504790|ref|YP_001571902.1| dimethyladenosine transferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189028814|sp|A9MQG2|RSMA_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|160866137|gb|ABX22760.1| hypothetical protein SARI_02914 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 273

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 148/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+ ++F E    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   +  + P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLGVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N
Sbjct: 223 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 267


>gi|77461356|ref|YP_350863.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1]
 gi|118600888|sp|Q3K5T2|RSMA_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|77385359|gb|ABA76872.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1]
          Length = 272

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  S  +  G  ++EIG G G LT  +L  GA ++ 
Sbjct: 3   EQYQHKARKRFGQNFLHDAGVIDRILRSINAKAGDRMLEIGPGQGALTAGILNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +   N   + Q DALK DF       + +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ ++          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH + P P      L+++ +EAF +RRKTLR +LK+L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLSNAEIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           AG++ +LR E L +  F R+ + L +
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADKLAE 263


>gi|298373556|ref|ZP_06983545.1| dimethyladenosine transferase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274608|gb|EFI16160.1| dimethyladenosine transferase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 262

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 105/273 (38%), Positives = 144/273 (52%), Gaps = 17/273 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGA 70
           TILS  ++ PKKY GQ+FL DL I ++IAE+    D I  ++EIG+G G LTQ LL    
Sbjct: 5   TILSVQRVTPKKYFGQHFLKDLRIAERIAETIP--DNIKNILEIGSGTGALTQFLLKKND 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
             ++ IE D++    L     +H  +L + +DD L  DF++ F+   P  I+ N PYNI 
Sbjct: 63  TNLLAIEIDKESCAYL----GEHYPQLRVFRDDFLTFDFDRIFD-DEPFGIVGNFPYNIS 117

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T +LF  +   +  PF+  +   FQKEV ERI A   +  YG  SVLT    +   +F +
Sbjct: 118 TEILFKVLDNRSRIPFFAGM---FQKEVAERICATHGNKVYGITSVLTQAFYRTEYLFTV 174

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENL 249
           S  VF P PKV S VI           C E L   I + AF +RRKT+R SLK    +  
Sbjct: 175 SEQVFVPPPKVKSAVIRLTRKEQQTLDCNERLFFSIVKTAFNQRRKTMRNSLKTFNAD-- 232

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
              +    +LR E +S E F  IT ++  NQ I
Sbjct: 233 --LSDKTFDLRPEQISQEQFIEITKLI-QNQSI 262


>gi|331006688|ref|ZP_08329965.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989]
 gi|330419496|gb|EGG93885.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989]
          Length = 274

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 139/261 (53%), Gaps = 11/261 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D NI+ +I  S  +     ++EIG G G +TQ L+     ++ VIE D+ 
Sbjct: 12  RKRFGQNFLTDQNIINRIVTSINAKPSDRLVEIGPGQGAITQQLIQ-ACPQLQVIELDRD 70

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PIL    +++P    I Q DAL+ DF        P+RI+ NLPYNI T L+F+ +S  
Sbjct: 71  LIPILLAQFAKYP-EFAIHQQDALRFDFATLMVEKQPLRIVGNLPYNISTPLIFHLLS-- 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +    + +  + QKEV  R+ A     +YGRLS++  +  +   +F + P  F P PKV
Sbjct: 128 -YQDRIQDMHFMLQKEVVNRLVATAGEKNYGRLSIMVQYYCETEHLFAVPPECFDPQPKV 186

Query: 202 TSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG----I 255
            S ++   PH  L  +   +  L  +   AF +RRKTLR +LK+L   + L  A     +
Sbjct: 187 DSAIVRLQPHKKLPYVANNVAHLSHLVNLAFQQRRKTLRNTLKQLADGDALQIAAEKLDL 246

Query: 256 ETNLRAENLSIEDFCRITNIL 276
             +LR ENLS ED+  ++N L
Sbjct: 247 NLSLRPENLSTEDYVNLSNTL 267


>gi|22127557|ref|NP_670980.1| dimethyladenosine transferase [Yersinia pestis KIM 10]
 gi|45443419|ref|NP_994958.1| dimethyladenosine transferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108810076|ref|YP_653992.1| dimethyladenosine transferase [Yersinia pestis Antiqua]
 gi|108810531|ref|YP_646298.1| dimethyladenosine transferase [Yersinia pestis Nepal516]
 gi|145600397|ref|YP_001164473.1| dimethyladenosine transferase [Yersinia pestis Pestoides F]
 gi|150260471|ref|ZP_01917199.1| dimethyladenosine transferase [Yersinia pestis CA88-4125]
 gi|162421183|ref|YP_001605347.1| dimethyladenosine transferase [Yersinia pestis Angola]
 gi|165928081|ref|ZP_02223913.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937777|ref|ZP_02226338.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008750|ref|ZP_02229648.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212108|ref|ZP_02238143.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401583|ref|ZP_02307077.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422020|ref|ZP_02313773.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167426031|ref|ZP_02317784.1| dimethyladenosine transferase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|218927690|ref|YP_002345565.1| dimethyladenosine transferase [Yersinia pestis CO92]
 gi|229836925|ref|ZP_04457090.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis Pestoides A]
 gi|229840380|ref|ZP_04460539.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842460|ref|ZP_04462615.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900719|ref|ZP_04515843.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis Nepal516]
 gi|270487910|ref|ZP_06204984.1| dimethyladenosine transferase [Yersinia pestis KIM D27]
 gi|294502587|ref|YP_003566649.1| dimethyladenosine transferase [Yersinia pestis Z176003]
 gi|27151586|sp|Q8ZIK5|RSMA_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600905|sp|Q1C0H5|RSMA_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600906|sp|Q1CMT2|RSMA_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221716|sp|A4TQD8|RSMA_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732644|sp|A9QZZ0|RSMA_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21960661|gb|AAM87231.1|AE013971_7 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis KIM 10]
 gi|45438288|gb|AAS63835.1| dimethyladenosine transferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774179|gb|ABG16698.1| dimethyladenosine transferase [Yersinia pestis Nepal516]
 gi|108781989|gb|ABG16047.1| dimethyladenosine transferase [Yersinia pestis Antiqua]
 gi|115346301|emb|CAL19172.1| dimethyladenosine transferase [Yersinia pestis CO92]
 gi|145212093|gb|ABP41500.1| dimethyladenosine transferase [Yersinia pestis Pestoides F]
 gi|149289879|gb|EDM39956.1| dimethyladenosine transferase [Yersinia pestis CA88-4125]
 gi|162353998|gb|ABX87946.1| dimethyladenosine transferase [Yersinia pestis Angola]
 gi|165914189|gb|EDR32805.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165919942|gb|EDR37243.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992089|gb|EDR44390.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206854|gb|EDR51334.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960157|gb|EDR56178.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048965|gb|EDR60373.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054954|gb|EDR64754.1| dimethyladenosine transferase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229682058|gb|EEO78150.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis Nepal516]
 gi|229690770|gb|EEO82824.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229696746|gb|EEO86793.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229705868|gb|EEO91877.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis Pestoides A]
 gi|262360617|gb|ACY57338.1| dimethyladenosine transferase [Yersinia pestis D106004]
 gi|262364563|gb|ACY61120.1| dimethyladenosine transferase [Yersinia pestis D182038]
 gi|270336414|gb|EFA47191.1| dimethyladenosine transferase [Yersinia pestis KIM D27]
 gi|294353046|gb|ADE63387.1| dimethyladenosine transferase [Yersinia pestis Z176003]
 gi|320016863|gb|ADW00435.1| dimethyladenosine transferase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 272

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/283 (36%), Positives = 150/283 (53%), Gaps = 26/283 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116
           +    + AR   + VIE D+     L    + HP   ++L I Q DA+KV+F +      
Sbjct: 53  E---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAMKVNFSELSEQAG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKTYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P+PKV S V+  IPH+  P P   +  L +IT +AF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDVRMLSRITTQAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 223 KTVRNSLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 265


>gi|312871246|ref|ZP_07731344.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a]
 gi|312872808|ref|ZP_07732873.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091850|gb|EFQ50229.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1]
 gi|311093260|gb|EFQ51606.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a]
          Length = 295

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G G+LT+ LL  GA
Sbjct: 14  RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120
            KV+  E D     IL  ++ +Q  N     R  II  D LK DF      +F+++ PI 
Sbjct: 74  -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPIS 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   S  YG L++    
Sbjct: 133 VVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHKSKAYGPLTIAVKK 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239
                  F++    F PSPKV S V+   P  + +    E L  +I + AF +RRKTL  
Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +LK L       + LL+   +++N+R E LSI  +  ++
Sbjct: 250 NLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELS 288


>gi|303256197|ref|ZP_07342213.1| dimethyladenosine transferase [Burkholderiales bacterium 1_1_47]
 gi|331001253|ref|ZP_08324879.1| dimethyladenosine transferase [Parasutterella excrementihominis YIT
           11859]
 gi|302860926|gb|EFL84001.1| dimethyladenosine transferase [Burkholderiales bacterium 1_1_47]
 gi|329568980|gb|EGG50776.1| dimethyladenosine transferase [Parasutterella excrementihominis YIT
           11859]
          Length = 274

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/269 (34%), Positives = 147/269 (54%), Gaps = 13/269 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +  +L H+K   +K  GQNFL D   + KIAE+    +G  +IEIG G   LT+ L+  G
Sbjct: 1   MAEVLKHHKA--RKRFGQNFLNDDFWINKIAEAVDPKEGQKIIEIGPGQAALTKELIA-G 57

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+ +  +E D+     L+  +   P +L +++ DALK D+ + F     IR++ NLPYNI
Sbjct: 58  AKHIYCVEIDRDLAAWLR--TKFTPEQLTVLEADALKFDW-RDFAAEEKIRVVGNLPYNI 114

Query: 130 GTRLLFNW--ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            + LLF    IS             + QKEV +R+ A   S  YGRLSV+   + +   +
Sbjct: 115 SSPLLFKLSEISDRVV-----DQHFMLQKEVVDRMVAAPGSKAYGRLSVMLQRKYRMVKL 169

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           FD+ P  F P+PKV S+V+  IP  NP     E+  ++   +F  RRKTL+ +L +    
Sbjct: 170 FDVPPEAFTPAPKVMSSVVRMIPIQNPAEVDEETFHQVVAASFAMRRKTLKNNLAKWISP 229

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
            ++ +AGI+   RAE++ +E+F R+  ++
Sbjct: 230 EMMEEAGIKPEQRAESVPLENFIRLARLV 258


>gi|296101215|ref|YP_003611361.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055674|gb|ADF60412.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 273

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 146/272 (53%), Gaps = 18/272 (6%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KV 73
           H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT+    +G R  ++
Sbjct: 6   HQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDEL 62

Query: 74  IVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNI 129
            VIE D+     L+     HP    +L I Q DA+ ++F +    +  P+R+  NLPYNI
Sbjct: 63  TVIELDRDLAARLQ----THPFLGPKLTIYQQDAMTMNFGELSEKMGQPLRVFGNLPYNI 118

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  +      + +
Sbjct: 119 STPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYFCNVIPVLE 175

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S V+  +PH   P P   L  L +IT EAF +RRKT+R SL  L   
Sbjct: 176 VPPSAFTPPPKVDSAVVRLVPHKTMPYPVKDLRVLSRITTEAFNQRRKTIRNSLGNLFTV 235

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           ++L + GI+  +RAEN+S+E +C++ N +++N
Sbjct: 236 DVLAELGIDPAMRAENISVEQYCKLANYISEN 267


>gi|71083413|ref|YP_266132.1| dimethyladenosine transferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|119365045|sp|Q4FMR0|RSMA_PELUB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71062526|gb|AAZ21529.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 262

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 148/261 (56%), Gaps = 11/261 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL+D  +L+KI  S   +    V+EIG G GNLT  +L    +K+ V+EKD  
Sbjct: 6   KKSLGQNFLIDREVLEKIV-SITDITNKEVLEIGPGSGNLTTYILKKKPKKLYVVEKDDD 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +LK+   +    ++II DD LKV      +    + +  NLPYNI T +L  WI  +
Sbjct: 65  LAILLKE---KFDTEIKIINDDILKVSESTISD--QKLSVFGNLPYNISTEILSKWI-LN 118

Query: 142 TWPPFW-ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               FW +SL L+FQKEV +RI ++ N+ +YGRLS+L+ W+     + DI P  F P PK
Sbjct: 119 IGSNFWFDSLVLMFQKEVADRIISEFNNSNYGRLSILSSWKLNVKKILDIKPQSFSPRPK 178

Query: 201 VTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIET 257
           + S+++ F P  N       ++L+KIT+  F +RRK L++   ++   G+ +  + GI+ 
Sbjct: 179 IDSSLLLFTPKENFFKLKDPKNLEKITRIFFSQRRKMLKKPFNQVFDNGKEVAEKFGIDL 238

Query: 258 NLRAENLSIEDFCRITNILTD 278
           NLR +NL  + + ++     D
Sbjct: 239 NLRPQNLEPDVYFKLVKEYED 259


>gi|42518291|ref|NP_964221.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533]
 gi|62900557|sp|Q74LI0|RSMA_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|41582575|gb|AAS08187.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533]
 gi|329666601|gb|AEB92549.1| dimethyladenosine transferase [Lactobacillus johnsonii DPC 6026]
          Length = 296

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 152/286 (53%), Gaps = 20/286 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPILKDISSQH------PNRLEIIQDDALKVDF----EKFFNISSPIR 120
            KV+  E DQ    IL +   Q        +R +++  D LK +F    + F ++S  ++
Sbjct: 74  -KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKSVK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPY I T ++FN I +D     + SLTL+ QKEV ER+ A+  +  YG LS+    
Sbjct: 133 IVANLPYYITTPIIFNLIKSDLD---FSSLTLMMQKEVAERLVAKPKTKEYGPLSIAVQS 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239
           R    +  ++    F P PKV S V+   P L  P          + +  F +RRKTL  
Sbjct: 190 RMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYAFFDHVVKMCFAQRRKTLAN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +LK L       E L++  G++  +R E L++  F ++ ++L D Q
Sbjct: 250 NLKTLIKDKDEREKLINDLGLDVRVRPEELTLNQFVQLAHLLKDRQ 295


>gi|268318776|ref|YP_003292432.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785]
 gi|262397151|emb|CAX66165.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785]
          Length = 296

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 152/286 (53%), Gaps = 20/286 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQRGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPILKDISSQH------PNRLEIIQDDALKVDF----EKFFNISSPIR 120
            KV+  E DQ    IL +   Q        +R +++  D LK +F    + F ++S  ++
Sbjct: 74  -KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKSVK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPY I T ++FN I +D     + SLTL+ QKEV ER+ A+  +  YG LS+    
Sbjct: 133 IVANLPYYITTPIIFNLIKSDLD---FSSLTLMMQKEVAERLVAKPKTKEYGPLSIAVQS 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239
           R    +  ++    F P PKV S V+   P L  P          + +  F +RRKTL  
Sbjct: 190 RMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYAFFDHVVKMCFAQRRKTLAN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +LK L       E L++  G++  +R E L++  F ++ ++L D Q
Sbjct: 250 NLKTLIKDKDEREKLINDLGLDARVRPEELTLNQFVQLAHLLKDRQ 295


>gi|293392900|ref|ZP_06637217.1| dimethyladenosine transferase [Serratia odorifera DSM 4582]
 gi|291424434|gb|EFE97646.1| dimethyladenosine transferase [Serratia odorifera DSM 4582]
          Length = 272

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 148/283 (52%), Gaps = 26/283 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVSAIHPQPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116
           +    +GAR  ++ VIE D+     L    + HP   ++L I Q DA+ V+F +      
Sbjct: 53  E---PVGARMDRMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAMTVNFSEMAEQAG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTQAIRDMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH L P     +  L +IT +AF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPTAFAPPPKVDSAVVRLVPHVLMPHTVSDVRMLSRITTQAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KT+R SL  L     L + G++  LRAEN+S+  +C++ N L+
Sbjct: 223 KTVRNSLGDLFTPEQLSELGVDPTLRAENISVAQYCQLANWLS 265


>gi|168177414|ref|ZP_02612078.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916]
 gi|182671129|gb|EDT83103.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916]
          Length = 275

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/276 (36%), Positives = 154/276 (55%), Gaps = 14/276 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   A
Sbjct: 4   KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLE-RA 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +++  IE D    PIL++   ++ N   +I  DALK+DF +       I+++ANLPY + 
Sbjct: 63  KEIYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYVT 121

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +   T    ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  +
Sbjct: 122 TPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKV 178

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244
           SP+ F P PKV S VI  +  L+     ++S K    + + +F  RRKTL  SLK L   
Sbjct: 179 SPNSFIPRPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237

Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273


>gi|325125130|gb|ADY84460.1| Dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 296

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 146/283 (51%), Gaps = 20/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            I++ Y +  KK +GQNFL+DL+ ++ I  ++G   G  V+E+G G G+LT+ LL  G  
Sbjct: 15  AIVNRYFVHAKKNLGQNFLVDLDAVRGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGG- 73

Query: 72  KVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIRI 121
           KV   E DQ    IL +     +  Q    R ++I  D LK DF      FF++S P+++
Sbjct: 74  KVTAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKV 133

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++FN +    +   + SLTL+ QKEV ER+ AQ  S  YG LS+    +
Sbjct: 134 VANLPYYITTPIIFNLLE---YSLDFTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQ 190

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240
               +  ++    F P PKV S V+   P   P      +   ++ +  F +RRKTL  +
Sbjct: 191 MSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANN 250

Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK L       E LL    +    R E L+I DF RI+  + +
Sbjct: 251 LKTLLPDKEDREKLLADLDLAPRQRPEQLAISDFIRISQAIAE 293


>gi|23097505|ref|NP_690971.1| dimethyladenosine transferase [Oceanobacillus iheyensis HTE831]
 gi|27151561|sp|P59155|RSMA_OCEIH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|22775728|dbj|BAC12006.1| dimethyladenosine transferase (16S rRNA dimethylase)
           [Oceanobacillus iheyensis HTE831]
          Length = 294

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 151/284 (53%), Gaps = 19/284 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D+++L+ I   +G       IEIG G G LT+ L  + A
Sbjct: 14  KDILGKYHFTFKKSLGQNFLVDVSVLQNIIRHAGITKDTAAIEIGPGIGALTEQL-AIHA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
            +V+  E DQ+  PIL+D   ++ N + +I  D LK D  K     F     + ++ANLP
Sbjct: 73  DQVVAFEIDQRLLPILQDTLGEYSN-VSVIHQDILKADVTKVIDEHFKEGQEVHVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L   I  D  P    SLT++ QKEV +R++ + NS  YG LS+   + ++A +
Sbjct: 132 YYITTPILMKLIR-DRLP--VTSLTVMIQKEVADRMSGEPNSKSYGSLSLAVQYYSEAKV 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
           + ++   VF P P V S+++        P+    E    +I Q +F +RRKTL+ +L R 
Sbjct: 189 VMNVPKQVFMPQPNVDSSILQLTMRKQPPVEVTDEDFFFEIIQASFAQRRKTLKNNLTRF 248

Query: 245 GG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                     +++L +AG+E   R E+L++E+F ++ N     Q
Sbjct: 249 FKGVHDKEKIDHILQEAGVEGIRRGESLTMEEFAQVANTFYQYQ 292


>gi|206578528|ref|YP_002240485.1| dimethyladenosine transferase [Klebsiella pneumoniae 342]
 gi|288937185|ref|YP_003441244.1| dimethyladenosine transferase [Klebsiella variicola At-22]
 gi|290512606|ref|ZP_06551972.1| dimethyladenosine transferase [Klebsiella sp. 1_1_55]
 gi|226732590|sp|B5Y1Z4|RSMA_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|206567586|gb|ACI09362.1| dimethyladenosine transferase [Klebsiella pneumoniae 342]
 gi|288891894|gb|ADC60212.1| dimethyladenosine transferase [Klebsiella variicola At-22]
 gi|289774947|gb|EFD82949.1| dimethyladenosine transferase [Klebsiella sp. 1_1_55]
          Length = 273

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 151/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+ ++F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHRTMPYPVKEVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L + G++  +RAEN+S+E +C++ N L++N
Sbjct: 223 KTIRNSLGNLFSVEVLTELGVDPAVRAENISVEQYCKMANWLSNN 267


>gi|116628883|ref|YP_814055.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323]
 gi|116094465|gb|ABJ59617.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323]
          Length = 298

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/287 (35%), Positives = 154/287 (53%), Gaps = 22/287 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG G G+LT+ LL  GA
Sbjct: 16  QAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIGPGIGSLTEQLLLAGA 75

Query: 71  RKVIVIEKDQQFFPILKD-----ISSQHPN-RLEIIQDDALKVDFEK----FFNISSPIR 120
            KV+  E DQ    ILK+     I  +  N R +++  D LK +F K    F +++ P++
Sbjct: 76  -KVLAYEVDQDLPEILKNELPQKIDGEELNSRFKLVMKDVLKANFTKDSDGFLDLNKPVK 134

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPY I T ++FN I +D     + SLTL+ QKEV ER+ A   +  YG L++    
Sbjct: 135 IVANLPYYITTPIIFNLIKSDLD---FSSLTLMMQKEVAERLVAIPKTKEYGPLTIAVQS 191

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238
           R    +  ++    F P PKV S V+   P L   P   +      + +  F +RRKTL 
Sbjct: 192 RMNVELAEEVKSTSFMPRPKVDSAVVVLTP-LTEKPNIDDYSFFDHVVKMCFAQRRKTLA 250

Query: 239 QSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +LK L       E +++  G++  +R E L++  F  + ++L D Q
Sbjct: 251 NNLKSLVRDKDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQQ 297


>gi|190149692|ref|YP_001968217.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263000|ref|ZP_07544622.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|226729747|sp|B3H0R3|RSMA_ACTP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189914823|gb|ACE61075.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871626|gb|EFN03348.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 289

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/268 (35%), Positives = 146/268 (54%), Gaps = 18/268 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D+N++  I  +    +G  ++EIG G G LT+ +      K+ V+E D+ 
Sbjct: 15  RKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAE-QVDKLTVVELDRD 73

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRL 133
               L+     HP   ++L II+ DAL+ +F ++F          +R+  NLPYNI T L
Sbjct: 74  LAERLR----HHPFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNISTPL 129

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+      +    + +  + QKEV +R+ A  NS  YGRL+++  +  +   + ++ P 
Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLEVPPT 186

Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P+PKV S V+  +PH + P P   +  L ++T +AF +RRKTLR +L  L     L 
Sbjct: 187 AFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSPEQLE 246

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
              I+ N RAENLSI D+ R+ N L DN
Sbjct: 247 ALSIDLNARAENLSIADYARLANWLYDN 274


>gi|312963419|ref|ZP_07777901.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6]
 gi|311282225|gb|EFQ60824.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6]
          Length = 270

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/265 (34%), Positives = 141/265 (53%), Gaps = 7/265 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            HY+   +K  GQNFL D  ++ +I  S  +     ++EIG G G LTQ LL  G  ++ 
Sbjct: 3   EHYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGG-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +   N   + Q DALK DF       + +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNTLNAAPNSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ ++          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH + P P      L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
           AG++ +LR E L +  F R+ + L 
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLA 262


>gi|134093647|ref|YP_001098722.1| dimethyladenosine transferase [Herminiimonas arsenicoxydans]
 gi|226732588|sp|A4G256|RSMA_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|133737550|emb|CAL60593.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Herminiimonas
           arsenicoxydans]
          Length = 255

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/260 (35%), Positives = 137/260 (52%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D  +L  I  +       T++EIG G   +T++LL  G  ++ V+E
Sbjct: 2   KHIPRKRFGQNFLTDDGVLHNIILAIDPQPQDTMVEIGPGLAAMTRLLLD-GVNQMHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFN 136
            D+     LK   +  P +L I   DAL+ DF        S +R++ NLPYNI + LLF+
Sbjct: 61  LDRDLVERLK--KTFDPKKLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFH 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                   P  +    + QKEV ER+ A+  S  YGRLSV+  WR    +MF + P  F 
Sbjct: 119 LAE---MAPHVQDQHFMLQKEVVERMVAEPGSKTYGRLSVMLQWRYHMELMFIVPPTAFD 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S ++  IP   P+PC    L+++  +AF +RRK +R  L  +  E  L +AGI 
Sbjct: 176 PPPRVESAIVRMIPIEKPLPCDQTKLEQVVLKAFSQRRKVIRNCLAGMFSEADLIEAGIN 235

Query: 257 TNLRAENLSIEDFCRITNIL 276
             +R E +S+  +  + N L
Sbjct: 236 PQMRPETISLAQYVALANRL 255


>gi|315654032|ref|ZP_07906948.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195]
 gi|315488728|gb|EFU78374.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195]
          Length = 295

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G G+LT+ LL  GA
Sbjct: 14  RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120
            KV+  E D     IL  ++ +Q  N     R  II  D LK DF      +F+++ PI 
Sbjct: 74  -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPII 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   S  YG L++    
Sbjct: 133 VVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHKSKAYGPLTIAVKK 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239
                  F++    F PSPKV S V+   P  + +    E L  +I + AF +RRKTL  
Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +LK L       + LL+   +++N+R E LSI  +  ++
Sbjct: 250 NLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELS 288


>gi|304413708|ref|ZP_07395152.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Candidatus Regiella insecticola LSR1]
 gi|304283799|gb|EFL92193.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Candidatus Regiella insecticola LSR1]
          Length = 280

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 150/283 (53%), Gaps = 21/283 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M NKSH      SH   I ++  GQNFL D +I+  I  +   + G  ++EIG+G G LT
Sbjct: 9   MKNKSHK-----SHQGHIARQRFGQNFLKDPHIIDSIVSAIHPIPGEAMVEIGSGLGVLT 63

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSP 118
           + +       + VIE D+     L    ++HP    +L I Q DA+  DF         P
Sbjct: 64  KPVAD-RIDHMTVIELDRDLAARL----AEHPTLKEKLTIYQQDAMNFDFSLLAEGAGQP 118

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           +R+  NLPYNI T L+F+  +   +      +  + QKEV  R+ A  ++  YGRL+V+ 
Sbjct: 119 LRVFGNLPYNISTPLMFHLFN---YTKIIRDMHFMLQKEVVNRLVAGPHNKAYGRLTVMA 175

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRK 235
            +  +   + ++ P  F P+PKV S V+  +PH    NP+      L++IT +AF +RRK
Sbjct: 176 QYYCQIIPIVEVPPEAFTPAPKVDSAVVRLVPHQQLPNPV-SDTRILRQITTQAFNQRRK 234

Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            +R SL +L     L +  I+ N+RAENLS+  +CR+ N L+D
Sbjct: 235 IIRNSLGKLFTAEQLTELDIDPNVRAENLSVAQYCRLANWLSD 277


>gi|255527800|ref|ZP_05394651.1| dimethyladenosine transferase [Clostridium carboxidivorans P7]
 gi|255508513|gb|EET84902.1| dimethyladenosine transferase [Clostridium carboxidivorans P7]
          Length = 278

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/282 (36%), Positives = 152/282 (53%), Gaps = 12/282 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           +S S K I+  Y     K +GQNFL+D ++L+ I ++S       VIEIG G G LT+ L
Sbjct: 2   ESLSTKDIVKKYGFKFSKSLGQNFLIDNSVLQDIVDNSNVSKDDLVIEIGPGVGTLTKEL 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   A+KV  IE D    PIL +   +  N  E++  DALKVDF +        +++ANL
Sbjct: 62  LK-KAKKVYAIELDSDLIPILNE-ELKEFNNFELVHKDALKVDFNELIGEEKSTKVVANL 119

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   +  +     +ESLT++ QKEVGERI A+ ++  YG LS+L  +     
Sbjct: 120 PYYVTTPIISKLLKENYK---FESLTIMIQKEVGERIAAKPSTKEYGALSILVQYYCDVE 176

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243
           ++  +S   F P PKV S VI     L P       E   K+ + +F  RRKTL   LK 
Sbjct: 177 IVRKVSCDSFVPRPKVDSIVIKLTKLLEPKVKVKSKELFFKVVRSSFNMRRKTLWNGLKS 236

Query: 244 LG-GENLLHQAGIETNL----RAENLSIEDFCRITNILTDNQ 280
           LG  +  L +A I+ N+    R E LS+E+F ++++ + + Q
Sbjct: 237 LGMKKESLEKAFIDANIDLKRRGETLSLEEFAKLSDCIYELQ 278


>gi|238852850|ref|ZP_04643255.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4]
 gi|282852550|ref|ZP_06261892.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1]
 gi|311111301|ref|ZP_07712698.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22]
 gi|238834544|gb|EEQ26776.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4]
 gi|282556292|gb|EFB61912.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1]
 gi|311066455|gb|EFQ46795.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22]
          Length = 296

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/287 (35%), Positives = 154/287 (53%), Gaps = 22/287 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  QAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPILKD-----ISSQHPN-RLEIIQDDALKVDFEK----FFNISSPIR 120
            KV+  E DQ    ILK+     I  +  N R +++  D LK +F K    F +++ P++
Sbjct: 74  -KVLAYEVDQDLPEILKNELPQKIDGEELNSRFKLVMKDVLKANFTKDSDGFLDLNKPVK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPY I T ++FN I +D     + SLTL+ QKEV ER+ A   +  YG L++    
Sbjct: 133 IVANLPYYITTPIIFNLIKSDLD---FSSLTLMMQKEVAERLVAIPKTKEYGPLTIAVQS 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238
           R    +  ++    F P PKV S V+   P L   P   +      + +  F +RRKTL 
Sbjct: 190 RMNVELAEEVKSTSFMPRPKVDSAVVVLTP-LTEKPNIDDYSFFDHVVKMCFAQRRKTLA 248

Query: 239 QSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +LK L       E +++  G++  +R E L++  F  + ++L D Q
Sbjct: 249 NNLKSLVRDKDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQQ 295


>gi|212636813|ref|YP_002313338.1| dimethyladenosine transferase [Shewanella piezotolerans WP3]
 gi|226732624|sp|B8CSX5|RSMA_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|212558297|gb|ACJ30751.1| Dimethyladenosine transferase [Shewanella piezotolerans WP3]
          Length = 270

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 151/283 (53%), Gaps = 21/283 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D N++ +I  +    +   ++EIG G   LT
Sbjct: 1   MSNKVH-----LGH---TARKRFGQNFLTDENVINRIVGAISPDNEHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119
           + + + G  K+ V+E D+     LK     HP   ++LEI Q DAL  DF++       +
Sbjct: 53  EPVAS-GIDKLTVVELDKDLVERLK----THPTLKDKLEIHQGDALNFDFKQLVREDMQM 107

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++  NLPYNI T L+F+      +  + E++  + QKEV  R++A   +  YGRL+V+  
Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAQYIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQ 164

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237
           +  +   + ++ P  F P PKV S V+  +P+   P PC  +E L+ +T  AF  RRKTL
Sbjct: 165 YHCQVMPVLEVPPGCFTPPPKVDSAVVRLVPYKTKPFPCKDVEVLRHLTTTAFNMRRKTL 224

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           R +LK +  ++   Q  I++ LR E +S++ +  + N+  D Q
Sbjct: 225 RNNLKHMLSDDEFAQLEIDSTLRPEQISVQQYVAMANLFIDKQ 267


>gi|116491525|ref|YP_811069.1| dimethyladenosine transferase [Oenococcus oeni PSU-1]
 gi|122276293|sp|Q04DR8|RSMA_OENOB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116092250|gb|ABJ57404.1| dimethyladenosine transferase [Oenococcus oeni PSU-1]
          Length = 292

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 157/280 (56%), Gaps = 18/280 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           +TIL+ Y +   K +GQNFL+DLN+L++I + +      TVIEIG G G+LT+ L    A
Sbjct: 14  RTILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-AA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V+  E D++  PIL +    + N +EI+  D LK DF   F  +  ++I+ANLPY I 
Sbjct: 73  KQVVAYEIDKKLIPILSETLRPYKN-VEIVNRDILKADF-SIFAKNQSLKIVANLPYYIT 130

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T +LF  +++      ++S+T++ QKEV  R+ A   S  YG LS+   +R    ++  +
Sbjct: 131 TPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILPV 187

Query: 191 SPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           +   F PSP V S ++   P  N    P   E+L KI + +F  RRK+L  +L    G+N
Sbjct: 188 TRKSFMPSPNVDSAIVQLTPKENFQSFPHE-EALFKIIKASFAHRRKSLVNNLLYYFGKN 246

Query: 249 ---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                     + + G + N+R E L++E++ ++ N L++N
Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286


>gi|32034722|ref|ZP_00134853.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207883|ref|YP_001053108.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae L20]
 gi|303249761|ref|ZP_07335965.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303252642|ref|ZP_07338805.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307245229|ref|ZP_07527320.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247401|ref|ZP_07529448.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249621|ref|ZP_07531607.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251949|ref|ZP_07533850.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254176|ref|ZP_07536021.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256444|ref|ZP_07538226.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258640|ref|ZP_07540375.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260874|ref|ZP_07542560.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166221641|sp|A3MZB7|RSMA_ACTP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|126096675|gb|ABN73503.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302648610|gb|EFL78803.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651328|gb|EFL81480.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306853873|gb|EFM86087.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856098|gb|EFM88254.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858319|gb|EFM90389.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306860641|gb|EFM92653.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862876|gb|EFM94825.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865074|gb|EFM96975.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867297|gb|EFM99150.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869441|gb|EFN01232.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 289

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/268 (35%), Positives = 146/268 (54%), Gaps = 18/268 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D+N++  I  +    +G  ++EIG G G LT+ +      K+ V+E D+ 
Sbjct: 15  RKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAE-QVDKLTVVELDRD 73

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRL 133
               L+     HP   ++L II+ DAL+ +F ++F          +R+  NLPYNI T L
Sbjct: 74  LAERLR----HHPFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNISTPL 129

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+      +    + +  + QKEV +R+ A  NS  YGRL+++  +  +   + ++ P 
Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLEVPPT 186

Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P+PKV S V+  +PH + P P   +  L ++T +AF +RRKTLR +L  L     L 
Sbjct: 187 AFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSPEQLE 246

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
              I+ N RAENLSI D+ R+ N L DN
Sbjct: 247 ALNIDLNARAENLSIADYARLANWLYDN 274


>gi|330812131|ref|YP_004356593.1| dimethyladenosine transferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380239|gb|AEA71589.1| putative dimethyladenosine transferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 272

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/265 (34%), Positives = 143/265 (53%), Gaps = 7/265 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            Y+   +K  GQNFL D  ++ +I  S  +     ++EIG G G LT+ LL  GA ++ V
Sbjct: 4   QYQHRARKRFGQNFLHDAGVIDRILRSIRAKPDDRLLEIGPGQGALTEGLLDSGA-QLDV 62

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+   PIL    +   N   + Q DALK DF       + +R++ NLPYNI T L+F
Sbjct: 63  VELDKDLVPILNQQFAGRSN-FSLHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLIF 121

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F
Sbjct: 122 HLLSNAG---LIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAF 178

Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S ++  +PH + P P      L+++ +EAF +RRKTLR +LK L     +  A
Sbjct: 179 NPPPKVDSAIVRLVPHAVLPHPAKDHRMLERVVREAFNQRRKTLRNTLKLLLSSAEIEAA 238

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G++ +LR E L +  F R+ + L++
Sbjct: 239 GVDGSLRPEQLDLAAFVRLADKLSE 263


>gi|308185629|ref|YP_003929760.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Pantoea vagans C9-1]
 gi|308056139|gb|ADO08311.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Pantoea vagans C9-1]
          Length = 273

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/286 (35%), Positives = 146/286 (51%), Gaps = 26/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       HY    +K  GQNFL D  I+  I  +        ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHYA---RKRFGQNFLNDQYIINSIVSAIHPQRDEALVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+  DF        
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLET----HPFLGPKLTIFQQDAMTFDFAALAQERG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   S  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ PH F P PKV S V+  +P   P  P   +  L +IT EAFG+RR
Sbjct: 163 MAQYYCQVIPVLEVPPHSFTPPPKVDSAVVRLVPFAEPPHPVSDVRILSRITTEAFGQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTLR SL  +     L +  I+  LRAEN+S+  +C++ N L ++Q
Sbjct: 223 KTLRNSLSHMVAAGALEELSIDPTLRAENVSVAQYCQLANWLANHQ 268


>gi|157374103|ref|YP_001472703.1| dimethyladenosine transferase [Shewanella sediminis HAW-EB3]
 gi|189028819|sp|A8FRV2|RSMA_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157316477|gb|ABV35575.1| dimethyladenosine transferase [Shewanella sediminis HAW-EB3]
          Length = 267

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 152/283 (53%), Gaps = 21/283 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH-----LGH---TARKRFGQNFLTDGNVINRIVGAIAPDNDHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119
           + +   G  K+ V+E D+     LK    +HP   ++L+I Q DALK DF +       +
Sbjct: 53  EPVAN-GIDKLTVVELDKDLVERLK----EHPTLKHKLDIHQGDALKFDFSQLVEEGRQM 107

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++  NLPYNI T L+F+      +    E++  + QKEV  R++A   +  YGRL+V+  
Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQ 164

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237
           +  +   + ++ PH F P+PKV S V+  +P+   P PC  ++ L+ +T  AF  RRKTL
Sbjct: 165 YHCQVMPVLEVPPHSFTPAPKVDSAVVRLVPYKTKPWPCKDVDQLRHLTTTAFNMRRKTL 224

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           R +LK +  +      GI+  LR E ++++ +  + N++ D +
Sbjct: 225 RNNLKHMISDEEFAALGIDATLRPEQITVQQYVAMANLVIDKK 267


>gi|325684673|gb|EGD26827.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 296

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 146/283 (51%), Gaps = 20/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            I++ Y +  KK +GQNFL+DL+ ++ I  ++G   G  V+E+G G G+LT+ LL  G  
Sbjct: 15  AIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGG- 73

Query: 72  KVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIRI 121
           KV   E DQ    IL +     +  Q    R ++I  D LK DF      FF++S P+++
Sbjct: 74  KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKV 133

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++FN + +      + SLTL+ QKEV ER+ AQ  S  YG LS+    +
Sbjct: 134 VANLPYYITTPIIFNLLESSLD---FTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQ 190

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240
               +  ++    F P PKV S V+   P   P      +   ++ +  F +RRKTL  +
Sbjct: 191 MSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANN 250

Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK L       E LL    +    R E L+I DF RI+  + +
Sbjct: 251 LKTLLPDKEDREKLLADLDLGPRQRPEQLAISDFIRISQAIAE 293


>gi|170768489|ref|ZP_02902942.1| dimethyladenosine transferase [Escherichia albertii TW07627]
 gi|170122593|gb|EDS91524.1| dimethyladenosine transferase [Escherichia albertii TW07627]
          Length = 273

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 147/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L + GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSAEVLTEMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|70732937|ref|YP_262708.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf-5]
 gi|118600886|sp|Q4K4X5|RSMA_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|68347236|gb|AAY94842.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf-5]
          Length = 270

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 140/264 (53%), Gaps = 7/264 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  ++ +I  S  +     ++EIG G G LT+ LL  GA ++ V+
Sbjct: 5   YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRMLEIGPGQGALTEGLLGSGA-QLDVV 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   PIL    +   N   + Q DALK DF         +R++ NLPYNI T L+F+
Sbjct: 64  ELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNTLGAAPGSLRVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLQNAG---LIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++  +PH + P P      L++I +EAF +RRKTLR +LK L     +  AG
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPAKDHRLLERIVREAFNQRRKTLRNTLKALLSSAEIEAAG 239

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           ++ +LR E L +  F R+ + L D
Sbjct: 240 VDGSLRPEQLDLAAFVRLADQLAD 263


>gi|320532470|ref|ZP_08033295.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135315|gb|EFW27438.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 364

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/270 (35%), Positives = 141/270 (52%), Gaps = 16/270 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P K +GQNF+ D   +++I +S+G     TV+EIG G G+LT  LL  GAR VI +E 
Sbjct: 79  IRPTKTLGQNFVHDAGTVRRIVKSAGVRPDDTVLEIGPGLGSLTLALLEAGAR-VIAVEI 137

Query: 79  D---QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTR 132
           D    +  P+ + D   Q   RL +I+ DAL +   +  + +   P R++ANLPYN+   
Sbjct: 138 DPALARALPVTVADRMPQAAGRLSLIEADALSITGPQSLDETGNPPTRLVANLPYNVAVP 197

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +L   + A    P  ES+T++ Q EV +R+ A+  S  YG  S+   W   A     IS 
Sbjct: 198 VLLTALEAL---PSLESVTVMVQSEVADRLAAEPGSRTYGVPSLKAAWYAAARRTLTISR 254

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGG----- 246
           HVF+P P V S ++  +    P      E +  +   AF +RRKTLR++L +L G     
Sbjct: 255 HVFWPVPNVDSALVELVRRRPPATRATREQVFAVVDAAFAQRRKTLRKALAKLAGGADAA 314

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E+ L  AGI+   R E L I  F  +  +L
Sbjct: 315 ESALRAAGIDPARRGETLDITAFAALAEVL 344


>gi|182420084|ref|ZP_02951318.1| dimethyladenosine transferase [Clostridium butyricum 5521]
 gi|237669472|ref|ZP_04529452.1| dimethyladenosine transferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376121|gb|EDT73708.1| dimethyladenosine transferase [Clostridium butyricum 5521]
 gi|237654916|gb|EEP52476.1| dimethyladenosine transferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 281

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 153/285 (53%), Gaps = 16/285 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+ K +  + ++  Y     K +GQNFL+D ++L  I + +   D   +IEIG G G LT
Sbjct: 1   MDLKDYKTQELVKKYNFKFSKSLGQNFLIDDSVLTDIVDGASVDDKDFIIEIGPGVGTLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             LL + A+KV  IE D    PIL++   +H N  ++I +DALKVDF         ++++
Sbjct: 61  AKLL-MKAKKVTSIELDNDLIPILQEELGEHEN-FDLIHNDALKVDFNSLIGDEPSVKLV 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   +  D +   ++SLT++ QKEV ERI A+ N   YG LSVL  +  
Sbjct: 119 ANLPYYVTTPIIVKLLK-DGYN--FKSLTIMIQKEVAERINAEPNCKEYGALSVLVQYYC 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
             +++  ++P  F P PKV S VI       P +N     L  +  + +  F  RRKTL 
Sbjct: 176 NTSIVRRVAPSCFIPRPKVESIVIRLDRLEAPRVNVKDENL--MFALVRAGFNMRRKTLW 233

Query: 239 QSLK--RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
            + K   L  E L     ++GI+   RAE LSIE+F  +++ + D
Sbjct: 234 NATKTFNLSKEKLEEAFEKSGIDPKRRAETLSIEEFAHLSDCIYD 278


>gi|169830264|ref|YP_001716246.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637108|gb|ACA58614.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 299

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 149/279 (53%), Gaps = 15/279 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +L+ Y + P+K +GQNFL+   +L KI E++       VIEIG G G LT+ L 
Sbjct: 12  TGEVRRLLAEYGLKPRKSLGQNFLVAAGVLDKILEAAEVEKDEVVIEIGPGVGALTRRLA 71

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIAN 124
             GAR V  +E D +  P+LK++     +R+ +I  DALKVD+        +   +++AN
Sbjct: 72  EKGAR-VAAVEIDGRLIPLLKEVLGDLGDRVRLINADALKVDYGALLAEMGAGSFKVVAN 130

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I +  +  ++ A      +E + L+ QKEV +R+TA   +  YG LSVL  + T+A
Sbjct: 131 LPYYITSPFVAGFLEAGYR---FERMVLMVQKEVADRMTAANGTESYGALSVLVAYHTEA 187

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLK 242
            +++ +S H F+P P V S V+  +    P    L  E   +I + +FG+RRK L  +L 
Sbjct: 188 DVVWRVSRHCFYPPPAVDSAVVRLMRRPAPAVTVLQPELFFRIVRASFGRRRKMLPNALA 247

Query: 243 -------RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
                  R     ++  AGI+  +R E L+ + F  I +
Sbjct: 248 GAVPGLDRETWVQIIESAGIDPRVRGETLTPDQFGLIAD 286


>gi|304396533|ref|ZP_07378414.1| dimethyladenosine transferase [Pantoea sp. aB]
 gi|304356042|gb|EFM20408.1| dimethyladenosine transferase [Pantoea sp. aB]
          Length = 273

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 147/286 (51%), Gaps = 26/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       HY    +K  GQNFL D  I+  I  +        ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHYA---RKRFGQNFLNDQYIIDSIVSAIHPQRDEALVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+  DF        
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLET----HPFLGPKLTIFQQDAMTFDFAALAQERG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   +  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGNKTYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ PH F P PKV S V+  +P+  P  P   +  L +IT EAFG+RR
Sbjct: 163 MAQYYCQIIPVLEVPPHSFTPPPKVDSAVVRLVPYAEPPYPVSDVRILSRITTEAFGQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTLR SL  +     L +  I+  LRAEN+S+  +C++ N L ++Q
Sbjct: 223 KTLRNSLSHMVAAGALEELSIDPTLRAENVSVAQYCQLANWLANHQ 268


>gi|170755195|ref|YP_001779707.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra]
 gi|259494244|sp|B1ID54|RSMA_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|169120407|gb|ACA44243.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra]
          Length = 275

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/276 (36%), Positives = 154/276 (55%), Gaps = 14/276 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   A
Sbjct: 4   KEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLE-RA 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V  IE D    PIL++   ++ N   +I  DALK++F +       I+++ANLPY + 
Sbjct: 63  KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKINFNELMENKDSIKLVANLPYYVT 121

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +   T    ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  +
Sbjct: 122 TPIISRLL---TEKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKV 178

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244
           SP+ F P PKV S VI  +  L+     ++S K    + + +F  RRKTL  SLK L   
Sbjct: 179 SPNSFIPKPKVDSIVIK-LDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237

Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273


>gi|292489394|ref|YP_003532281.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Erwinia amylovora CFBP1430]
 gi|292898387|ref|YP_003537756.1| dimethyladenosine transferase [Erwinia amylovora ATCC 49946]
 gi|291198235|emb|CBJ45341.1| dimethyladenosine transferase [Erwinia amylovora ATCC 49946]
 gi|291554828|emb|CBA22688.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Erwinia amylovora CFBP1430]
 gi|312173559|emb|CBX81813.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 275

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 26/283 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN++ H       H+    +K  GQNFL D  I+  I  +     G  V+EIG G G LT
Sbjct: 1   MNSRVHQ-----GHFA---RKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R   + V+E D+     L+     HP    +L I Q DA+  DF        
Sbjct: 53  E---PVGERLDSMTVVELDRDLAARLQS----HPFLGPKLTIFQQDAMTFDFAALAQEKG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   S  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P+PKV S V+  +P+  P+     + +L +IT EAFGKRR
Sbjct: 163 MAQYYCQVIPVLEVPPESFTPAPKVDSAVVRLMPYAQPLHPVDDIRALSRITTEAFGKRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTLR SL  L   ++L +  I+  LRAEN+++  +C++ N LT
Sbjct: 223 KTLRNSLGHLFTTDVLAEMNIDPTLRAENITVAQYCQLANWLT 265


>gi|309808503|ref|ZP_07702402.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a]
 gi|308168331|gb|EFO70450.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a]
          Length = 295

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G G+LT+ LL  GA
Sbjct: 14  RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120
            KV+  E D     IL  ++ +Q  N     R  II  D LK DF      +F+++ PI 
Sbjct: 74  -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPII 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   S  YG L++    
Sbjct: 133 VVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHKSKAYGPLTIAVKK 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239
                  F++    F PSPKV S V+   P  + +    E L  +I + AF +RRKTL  
Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +LK L       + LL+   +++N+R E LSI  +  ++
Sbjct: 250 NLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELS 288


>gi|309803693|ref|ZP_07697783.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d]
 gi|309804982|ref|ZP_07699040.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c]
 gi|309806700|ref|ZP_07700695.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b]
 gi|312874063|ref|ZP_07734098.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d]
 gi|325913223|ref|ZP_08175592.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B]
 gi|308164291|gb|EFO66548.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d]
 gi|308165742|gb|EFO67967.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c]
 gi|308166880|gb|EFO69064.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b]
 gi|311090403|gb|EFQ48812.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d]
 gi|325477487|gb|EGC80630.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B]
          Length = 295

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G G+LT+ LL  GA
Sbjct: 14  RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120
            KV+  E D     IL  ++ +Q  N     R  II  D LK DF      +F+++ PI 
Sbjct: 74  -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPII 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   S  YG L++    
Sbjct: 133 VVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHKSKAYGPLTIAVKK 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239
                  F++    F PSPKV S V+   P  + +    E L  +I + AF +RRKTL  
Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +LK L       + LL+   +++N+R E LSI  +  ++
Sbjct: 250 NLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELS 288


>gi|24375138|ref|NP_719181.1| dimethyladenosine transferase [Shewanella oneidensis MR-1]
 gi|33516936|sp|Q8EB93|RSMA_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|24349908|gb|AAN56625.1|AE015799_12 dimethyladenosine transferase [Shewanella oneidensis MR-1]
          Length = 268

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 144/267 (53%), Gaps = 19/267 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ- 80
           +K  GQNFL D N++ +I  +    +   ++EIG G G LT+ + T     + V+E D+ 
Sbjct: 12  RKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTVVELDRD 70

Query: 81  -----QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
                Q  P+LKD       +L I Q DAL+ DF +       +++  NLPYNI T L+F
Sbjct: 71  LVERLQNHPVLKD-------KLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E++  + QKEV  R++A   +  YGRL+V+  +  +   + ++ PH F
Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYFCQVVPVLEVPPHSF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P PC  +  L+++   AF  RRKTLR +LK++  +    Q 
Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+ NLR E +S+E +  + N++ D Q
Sbjct: 241 GIDQNLRPEQISVEQYVAMANMVCDKQ 267


>gi|189182934|ref|YP_001936719.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Ikeda]
 gi|189179705|dbj|BAG39485.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Ikeda]
          Length = 273

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/274 (36%), Positives = 151/274 (55%), Gaps = 12/274 (4%)

Query: 10  LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQML 65
           L T+  H   +KI   K +GQ+FLLD NI  KI   +   + G  V+E+G GPG LT+ +
Sbjct: 4   LPTVSQHMKLHKITANKSLGQHFLLDSNICNKIVSVAPNPITGKVVLEVGPGPGGLTRAI 63

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L    +K+IVIEKD  F  +L +I +   ++LE+I  DAL  D       S+ I II+NL
Sbjct: 64  LAHNPKKLIVIEKDASFIELLHEIPTMPSSKLEVICGDALNFDLSNIE--SNRIIIISNL 121

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYNIGT+L+  W+   +   F E + ++ Q EV ERIT+  +S  YGR++VL    +   
Sbjct: 122 PYNIGTQLIVQWLHQIS---FVEYMIIMLQDEVVERITSPHSSKMYGRITVLAQIVSDVR 178

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRL 244
             F +S   F P PKV S+V+   P  + +    +E+++KIT+ AF  RRK L+  L  L
Sbjct: 179 KCFKVSSRAFNPPPKVDSSVMLVSPKKHQLDRNTIENVQKITKLAFSTRRKKLKNCLSHL 238

Query: 245 GGENLLHQAGIETNL--RAENLSIEDFCRITNIL 276
                +    +   L  R E L+ E + +++ IL
Sbjct: 239 LKSINITDEILNAQLHQRPEQLTPEQYVQLSRIL 272


>gi|329925506|ref|ZP_08280380.1| dimethyladenosine transferase [Paenibacillus sp. HGF5]
 gi|328939789|gb|EGG36129.1| dimethyladenosine transferase [Paenibacillus sp. HGF5]
          Length = 294

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/282 (36%), Positives = 154/282 (54%), Gaps = 23/282 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+S +    KK +GQNFL+D NIL KI E++G  +    +EIG G G LT+ L    A
Sbjct: 14  KEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQT-A 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
             V  +E DQ+  PILK++   + N + +   D LKVD    F + F   S + ++ANLP
Sbjct: 73  GTVTAVEIDQRLIPILKEVLEPYGN-VRVHHGDVLKVDLHELFRQDFGDVSKVSVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   +  +  P   E++ ++ QKEV ER+ A   S  YG LS+   + ++  +
Sbjct: 132 YYVTTPILMKLLE-EKLP--LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQYYSEPKL 188

Query: 187 MFDISPH-VFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK 242
           +  I PH VF P P V S VI       P P  +E  +   ++ Q +F +RRKT+  +LK
Sbjct: 189 VC-IVPHTVFIPQPNVESAVIRLAVREQP-PVRVEDERFFFEVVQASFAQRRKTIANNLK 246

Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   R   E LL +AGIE + R E LSIE++ R++N+L
Sbjct: 247 SRFFPGEGRERLEQLLQEAGIEPSRRGETLSIEEYARLSNVL 288


>gi|109899726|ref|YP_662981.1| dimethyladenosine transferase [Pseudoalteromonas atlantica T6c]
 gi|109702007|gb|ABG41927.1| dimethyladenosine transferase [Pseudoalteromonas atlantica T6c]
          Length = 268

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/265 (36%), Positives = 142/265 (53%), Gaps = 13/265 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+ +I  +     G  V+EIG G G LT+ +  L   K+ V+E D+ 
Sbjct: 11  RKRFGQNFLHDPYIIDQIVSAINPQVGQNVVEIGPGLGALTEPVCEL-IDKLTVVELDRD 69

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+     HP   ++L I++ DALK DF + F+   P+R+  NLPYNI T L+F+  
Sbjct: 70  LAQRLRT----HPFIASKLNIVEKDALKFDFSELFSEEHPLRVFGNLPYNISTPLMFHLF 125

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S   +    + +  + QKEV  R+ A   + +YGRLSV+  +      +  + P  F P 
Sbjct: 126 S---FAHKVQDMHFMLQKEVVNRLAASPGNKNYGRLSVMAQYHCHIMPVIHVPPGAFNPP 182

Query: 199 PKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IPH + P+     E+L ++  +AF +RRKT+R SLK    E  L    I 
Sbjct: 183 PKVDSAVVRLIPHKVRPVEVKSEEALNRVCAQAFNQRRKTIRNSLKESLSEAQLISLDIN 242

Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281
             LRAENLS+  F +I ++    Q+
Sbjct: 243 PELRAENLSLAQFGQIADLAFSTQE 267


>gi|88704595|ref|ZP_01102308.1| Dimethyladenosine transferase [Congregibacter litoralis KT71]
 gi|88700916|gb|EAQ98022.1| Dimethyladenosine transferase [Congregibacter litoralis KT71]
          Length = 268

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 137/262 (52%), Gaps = 7/262 (2%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQNFL D  ++ ++  +        ++EIG G G LT  LL  G  ++  IE D+
Sbjct: 11  PRKRFGQNFLRDPGVIDRLERAIAPAASQHLVEIGPGLGALTDALLQSGC-QLDAIELDR 69

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L    S HPN   +   DALK DF         +R++ NLPYNI T L+F  +  
Sbjct: 70  DLVTPLLAAFSIHPN-FTLHSADALKFDFSSVVRGEEQLRVVGNLPYNISTPLIFRLLE- 127

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P  + +  + Q EV +R+TA   + H+GRL ++  +  +  ++F++ P  F P PK
Sbjct: 128 --QAPIIKDMHFMLQLEVVQRLTATPGNKHWGRLGIMAQYLCRTELLFEVPPEAFDPPPK 185

Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S +I   PH +P+   C  + L+K+ + AF +RRKTLR +LK L  +  +   GI+  
Sbjct: 186 VQSAIIRLTPHQSPLYPDCDSKILEKVVKAAFAQRRKTLRNNLKGLLTDEAIEATGIDPG 245

Query: 259 LRAENLSIEDFCRITNILTDNQ 280
            RAE L++  F  +   L ++Q
Sbjct: 246 CRAETLALARFVALAEQLENSQ 267


>gi|329920627|ref|ZP_08277314.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G]
 gi|328935885|gb|EGG32345.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G]
          Length = 295

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G G+LT+ LL  GA
Sbjct: 14  RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120
            KV+  E D     IL  ++ +Q  N     R  II  D LK DF      +F+++ PI 
Sbjct: 74  -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQPII 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   S  YG L++    
Sbjct: 133 VVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHKSKAYGPLTIAVKK 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239
                  F++    F PSPKV S V+   P  + +    E L  +I + AF +RRKTL  
Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +LK L       + LL+   +++N+R E LSI  +  ++
Sbjct: 250 NLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELS 288


>gi|254796737|ref|YP_003081573.1| dimethyladenosine transferase [Neorickettsia risticii str.
           Illinois]
 gi|254589984|gb|ACT69346.1| dimethyladenosine transferase [Neorickettsia risticii str.
           Illinois]
          Length = 262

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/262 (35%), Positives = 137/262 (52%), Gaps = 10/262 (3%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ+F+ D  +L KI ++  S+ G  + EIGAG G L+  +L      ++ +EKD++F
Sbjct: 6   KLLGQHFIYDREVLDKIIDTVTSVKGKHIFEIGAGSGTLSAAILLREPASLMSVEKDKRF 65

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              L  + +Q+ N    I  DAL +     +     + IIANLPYNI T LL  W++   
Sbjct: 66  SESLSSLMAQYQNYKYTI-GDALLIRLSSLYK-QEKVTIIANLPYNIATHLLLGWMNELE 123

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                  + L+FQKEV +RI AQ  S  YG LSVL     K    F ++P VF P PKVT
Sbjct: 124 ---HIREMVLMFQKEVADRICAQPKSKSYGTLSVLVQLECKVESQFTLAPEVFTPPPKVT 180

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIET 257
           STV+   P     P     L+KI  E F +RRK +++SL R+  ++      L  AG   
Sbjct: 181 STVLKLTPLEKKWPRNKPVLEKILTEGFSQRRKMIKKSLSRVFKDSEALHFALAHAGASP 240

Query: 258 NLRAENLSIEDFCRITNILTDN 279
            +R E L+ E  C+++ +   N
Sbjct: 241 TMRIEELNPEQLCKLSCMAEMN 262


>gi|165975860|ref|YP_001651453.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|226729748|sp|B0BTQ4|RSMA_ACTPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|165875961|gb|ABY69009.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 289

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/268 (35%), Positives = 145/268 (54%), Gaps = 18/268 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D+N++  I  +    +G  + EIG G G LT+ +      K+ V+E D+ 
Sbjct: 15  RKRFGQNFLHDMNVIHNIVSAINPKNGQFLFEIGPGLGALTEPVAE-QVDKLTVVELDRD 73

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRL 133
               L+     HP   ++L II+ DAL+ +F ++F          +R+  NLPYNI T L
Sbjct: 74  LAERLR----HHPFLNHKLTIIEQDALRFNFREYFESLELKEGEGVRVFGNLPYNISTPL 129

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+      +    + +  + QKEV +R+ A  NS  YGRL+++  +  +   + ++ P 
Sbjct: 130 MFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVVPVLEVPPT 186

Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P+PKV S V+  +PH + P P   +  L ++T +AF +RRKTLR +L  L     L 
Sbjct: 187 AFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSPEQLE 246

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
              I+ N RAENLSI D+ R+ N L DN
Sbjct: 247 ALNIDLNARAENLSIADYARLANWLYDN 274


>gi|152968629|ref|YP_001333738.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893024|ref|YP_002917758.1| dimethyladenosine transferase [Klebsiella pneumoniae NTUH-K2044]
 gi|262044916|ref|ZP_06017958.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330009280|ref|ZP_08306496.1| dimethyladenosine transferase [Klebsiella sp. MS 92-3]
 gi|166221672|sp|A6T4I7|RSMA_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|150953478|gb|ABR75508.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545340|dbj|BAH61691.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|238774027|dbj|BAH66524.1| dimethyladenosine transferase [Klebsiella pneumoniae NTUH-K2044]
 gi|238774059|dbj|BAH66555.1| dimethyladenosine transferase [Klebsiella pneumoniae]
 gi|259037643|gb|EEW38872.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328534857|gb|EGF61399.1| dimethyladenosine transferase [Klebsiella sp. MS 92-3]
          Length = 273

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+ ++F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L + GI+  +RAEN+S+  +C + N L+DN
Sbjct: 223 KTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDN 267


>gi|260596475|ref|YP_003209046.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Cronobacter turicensis z3032]
 gi|260215652|emb|CBA27949.1| Dimethyladenosine transferase [Cronobacter turicensis z3032]
          Length = 273

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 150/286 (52%), Gaps = 28/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+ +DF +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQ----THPFLGPKLTIYQQDAMTMDFGELSQKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKR 233
           +  +      + ++ P  F P PKV S V+  +PH  P P  ++ L+   ++T EAF +R
Sbjct: 163 MAQYFCNVIPVLEVPPTAFTPPPKVDSAVVRLVPHATP-PHPVKELRLLSRLTTEAFNQR 221

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           RKT+R SL  +   ++L   G++  +RAEN+S+  +C++ N L DN
Sbjct: 222 RKTIRNSLGNVFTPDVLVSLGVDPAMRAENISVAQYCQMANYLADN 267


>gi|312874729|ref|ZP_07734748.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b]
 gi|311089474|gb|EFQ47899.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b]
          Length = 295

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G G+LT+ LL  GA
Sbjct: 14  RAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120
            KV+  E D     IL  ++ +Q  N     R  II  D LK DF      +F+++ PI 
Sbjct: 74  -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPII 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   S  YG L++    
Sbjct: 133 VVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISAAHKSKAYGPLTIAVKK 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239
                  F++    F PSPKV S V+   P  + +    E L  +I + AF +RRKTL  
Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +LK L       + LL+   +++N+R E LSI  +  ++
Sbjct: 250 NLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELS 288


>gi|259500886|ref|ZP_05743788.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335]
 gi|302190661|ref|ZP_07266915.1| dimethyladenosine transferase [Lactobacillus iners AB-1]
 gi|309809117|ref|ZP_07702990.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D]
 gi|259167580|gb|EEW52075.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335]
 gi|308170562|gb|EFO72582.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D]
          Length = 295

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G G+LT+ LL  GA
Sbjct: 14  RAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120
            KV+  E D     IL  ++ +Q  N     R  II  D LK DF      +F+++ PI 
Sbjct: 74  -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQPII 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   S  YG L++    
Sbjct: 133 VVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHKSKAYGPLTIAVKK 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239
                  F++    F PSPKV S V+   P  + +    E L  +I + AF +RRKTL  
Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +LK L       + LL+   +++N+R E LSI  +  ++
Sbjct: 250 NLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELS 288


>gi|307132632|ref|YP_003884648.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Dickeya dadantii 3937]
 gi|306530161|gb|ADN00092.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Dickeya dadantii 3937]
          Length = 272

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 148/286 (51%), Gaps = 32/286 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQ---HP---NRLEIIQDDALKVDFEKFFN 114
              + +G R     V+E D       +D++++   HP   ++L IIQ DA+ VDF     
Sbjct: 53  ---IPVGERIDSFTVVELD-------RDLAARLEVHPTLRDKLTIIQQDAMTVDFAALSQ 102

Query: 115 -ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  +S  YGR
Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLFS---YTQAIRDMHFMLQKEVVNRLVAGPDSKAYGR 159

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFG 231
           LSV+  +  +   + ++ P  F P+PKV S V+  +PH  +P P      L +IT EAF 
Sbjct: 160 LSVMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTTSPYPAVDTRILSRITTEAFN 219

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +RRKTLR SL  L     L    ++ N+RAEN++I  +CR+   LT
Sbjct: 220 QRRKTLRNSLGNLFTPEQLTALEVDPNVRAENVTITQYCRLAEWLT 265


>gi|118587313|ref|ZP_01544740.1| dimethyladenosine transferase [Oenococcus oeni ATCC BAA-1163]
 gi|118432302|gb|EAV39041.1| dimethyladenosine transferase [Oenococcus oeni ATCC BAA-1163]
          Length = 292

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 156/280 (55%), Gaps = 18/280 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ Y +   K +GQNFL+DLN+L++I + +      TVIEIG G G+LT+ L    A
Sbjct: 14  RAILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-AA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V+  E D++  PIL +    + N +EI+  D LK DF   F  +  ++I+ANLPY I 
Sbjct: 73  KQVVAYEIDKKLIPILSETLRPYKN-VEIVNRDILKADF-SIFAKNQSLKIVANLPYYIT 130

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T +LF  +++      ++S+T++ QKEV  R+ A   S  YG LS+   +R    ++  +
Sbjct: 131 TPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILPV 187

Query: 191 SPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           +   F PSP V S V+   P  N    P   E+L KI + +F  RRK+L  +L    G+N
Sbjct: 188 TRKSFMPSPNVDSAVVQLTPKENFQSFPHE-EALFKIIKASFAHRRKSLVNNLLYYFGKN 246

Query: 249 ---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                     + + G + N+R E L++E++ ++ N L++N
Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286


>gi|291520367|emb|CBK75588.1| dimethyladenosine transferase [Butyrivibrio fibrisolvens 16/4]
          Length = 284

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 155/291 (53%), Gaps = 26/291 (8%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           ++N +++   + +H     KKY GQNFL+D N+L  I +++G      V+EIG G G +T
Sbjct: 4   LSNPTYTKAVLEAHGFSFQKKY-GQNFLIDGNVLDNIIDAAGITKDDFVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    AR+V+ +E D+   PIL D  S + N   +I  D LKVD +      N   PI
Sbjct: 63  QRLCE-EAREVVAVEIDKTLIPILDDTLSTYKN-WTVINQDILKVDIKALADEKNGGKPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +    P  ES+T++ QKEV +R+     S  YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFESHV--PL-ESITIMVQKEVADRMQEGPGSKEYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLR 238
           + +   ++ ++ P  F P PKV STVI    H   P+ C  + L +I + +F +RRKTL+
Sbjct: 178 YYSNPEIVCEVPPSCFMPQPKVASTVITLKCHEKPPVECDEKLLFQIIRASFNQRRKTLQ 237

Query: 239 QSLKRLGGENLLH-----------QAGIETNLRAENLSIEDFCRITNILTD 278
             L      N LH           +AG    +R E LS+E+F ++TNIL +
Sbjct: 238 NGLG-----NGLHYSKEQIAEAISKAGYSPTIRGEALSLEEFAKLTNILKE 283


>gi|114048606|ref|YP_739156.1| dimethyladenosine transferase [Shewanella sp. MR-7]
 gi|123131134|sp|Q0HS06|RSMA_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|113890048|gb|ABI44099.1| dimethyladenosine transferase [Shewanella sp. MR-7]
          Length = 268

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 144/267 (53%), Gaps = 19/267 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ- 80
           +K  GQNFL D N++ +I  +    +   ++EIG G G LT+ + T     + V+E D+ 
Sbjct: 12  RKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTVVELDRD 70

Query: 81  -----QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
                Q  P+LKD       +L I Q DAL+ DF +       +++  NLPYNI T L+F
Sbjct: 71  LVERLQNHPVLKD-------KLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E++  + QKEV  R++A   +  YGRL+V+  +  +   + ++ PH F
Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P PC  +  L+++   AF  RRKTLR +LK++  +    Q 
Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+ NLR E +S+E +  + N++ D Q
Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267


>gi|332305311|ref|YP_004433162.1| dimethyladenosine transferase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172640|gb|AEE21894.1| dimethyladenosine transferase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 268

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 141/259 (54%), Gaps = 13/259 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+ +I  +    +G  V+EIG G G +T+ +  L   K+ V+E D+ 
Sbjct: 11  RKRFGQNFLHDPYIIDQIVSAINPQNGQNVVEIGPGLGAITEPVCEL-IDKLTVVELDRD 69

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+     HP   ++L I++ DALK DF + F+  +P+R+  NLPYNI T L+F+  
Sbjct: 70  LAQRLRT----HPFIASKLNIVEKDALKFDFSELFSEENPLRVFGNLPYNISTPLMFHLF 125

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S   +    + +  + QKEV  R+ A   + +YGRLSV+  +      +  + P  F P 
Sbjct: 126 S---FAHKVQDMHFMLQKEVVNRLAASPGNKNYGRLSVMAQYHCHIMPVIHVPPGAFNPP 182

Query: 199 PKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IPH + P+     E L ++  +AF +RRKT+R SLK    E  L    I 
Sbjct: 183 PKVDSAVVRLIPHKVRPVAVKSEEVLNRVCAQAFNQRRKTIRNSLKESVSEAQLLSLDIN 242

Query: 257 TNLRAENLSIEDFCRITNI 275
             LRAENLS+  F +I ++
Sbjct: 243 PELRAENLSLAQFGQIADL 261


>gi|330961062|gb|EGH61322.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 268

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 7/264 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ V+
Sbjct: 5   YQHRARKRFGQNFLHDAGVIDKILRAIRAKSEERLLEIGPGQGALTEGLLNSGA-QLDVV 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+F+
Sbjct: 64  ELDKDLIPILNSQFAGKPN-FSLHQGDALKFDFNSLGAEPHSLRVVGNLPYNISTPLIFH 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +   +       +  + QKEV ER+        +GRLS++  +  +   +F++ P  F 
Sbjct: 123 LLQNAS---LIRDMHFMLQKEVVERMATGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++  +PH   P P      L+++ +EAF +RRKTLR +LK L   + +  +G
Sbjct: 180 PPPKVDSAIVRLVPHETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITASG 239

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           ++ +LR E L +  F R+ + L++
Sbjct: 240 VDGSLRPEQLDLAAFVRLADTLSE 263


>gi|311280966|ref|YP_003943197.1| dimethyladenosine transferase [Enterobacter cloacae SCF1]
 gi|308750161|gb|ADO49913.1| dimethyladenosine transferase [Enterobacter cloacae SCF1]
          Length = 273

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 149/285 (52%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+ ++F +    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQ----THPFLGPKLTIYQQDAMTMNFGELAEKLG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH  P      +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTPPHPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L   ++L   GI+  +RAEN+S+  +C++ N LT+N
Sbjct: 223 KTIRNSLGNLFTVDVLTGLGIDPAVRAENISVAQYCQMANWLTEN 267


>gi|56961852|ref|YP_173574.1| dimethyladenosine transferase [Bacillus clausii KSM-K16]
 gi|62900485|sp|Q5WLW2|RSMA_BACSK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56908086|dbj|BAD62613.1| dimethyladenosine transferase [Bacillus clausii KSM-K16]
          Length = 296

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/279 (35%), Positives = 148/279 (53%), Gaps = 19/279 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  +    KK +GQNFL+DLNIL KI E+SG  +   ++EIG G G LT+ L    A 
Sbjct: 15  AILKKHGFTLKKSLGQNFLIDLNILAKIVEASGFDEQDGIVEIGPGIGALTEQLAK-KAD 73

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127
           KV+  E D +  P+L+D  S +PN ++II  D LK D     +  F+    I ++ANLPY
Sbjct: 74  KVVAFEIDGRLIPVLEDTLSAYPN-VKIIHSDVLKADLPGVLDAEFSKGQAIHVVANLPY 132

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            + T +L   +  D  P  ++S+T++ Q EV ERI A+  S  YG LS+   +  +A  M
Sbjct: 133 YVTTPILMKLLE-DRLP--FKSITVMIQAEVAERIAAKPGSKEYGALSIAAQYYAEAKPM 189

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KRL 244
             +   VF P P+V S+V+       P+   ++      +   +F  RRKT+  +L   L
Sbjct: 190 VVVPASVFVPQPRVDSSVLKLTIREKPLVEVIDERWFFNVFHASFANRRKTILNNLVHNL 249

Query: 245 GG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G       E  L +AGI+   R E LS ++F R+++ L
Sbjct: 250 AGKDAKAAIEQALSEAGIDPKRRGETLSPQEFARLSDAL 288


>gi|172056080|ref|YP_001812540.1| dimethyladenosine transferase [Exiguobacterium sibiricum 255-15]
 gi|171988601|gb|ACB59523.1| dimethyladenosine transferase [Exiguobacterium sibiricum 255-15]
          Length = 292

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 155/284 (54%), Gaps = 20/284 (7%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           H  K IL+ +    KK +GQNFL+DLN+L  I  ++       V+EIG G G+LT+    
Sbjct: 8   HRTKEILAKHGFSFKKSLGQNFLIDLNVLGNIVGAANLTPDSGVLEIGPGIGSLTEQSAK 67

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS------SPIRI 121
             A+KV+ +E DQ+  PIL+D  + +P+ +++I  DAL++D E   +        + + +
Sbjct: 68  -QAKKVVALEIDQRLLPILEDSLAPYPH-VKVIHGDALELDLETIVDEEFTQQGITDLAV 125

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY + T ++   + A T  PF  +L ++ QKEV ERI AQ  +  YG LS+   + 
Sbjct: 126 VANLPYYVTTPIIMRILEART--PF-RTLIMMIQKEVAERIGAQPGTKAYGSLSIAIQYY 182

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQ 239
            +A + F +   VF P+P V S VI       P    L+     ++T+ +F +RRKT+  
Sbjct: 183 AEAEVCFTVPKQVFIPAPNVDSAVIRLNIRKEPAVKTLDEKLFFEVTRASFAQRRKTILN 242

Query: 240 SLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +L    G       E  LH+AGI+   R E LS+++F ++ + L
Sbjct: 243 NLSSHFGKAEKEAVEAALHEAGIDPRRRGETLSLQEFAQLADAL 286


>gi|113969249|ref|YP_733042.1| dimethyladenosine transferase [Shewanella sp. MR-4]
 gi|123325289|sp|Q0HLT2|RSMA_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|113883933|gb|ABI37985.1| dimethyladenosine transferase [Shewanella sp. MR-4]
          Length = 268

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 144/267 (53%), Gaps = 19/267 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ- 80
           +K  GQNFL D N++ +I  +    +   ++EIG G G LT+ + T     + V+E D+ 
Sbjct: 12  RKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTVVELDRD 70

Query: 81  -----QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
                Q  P+LKD       +L I Q DAL+ DF +       +++  NLPYNI T L+F
Sbjct: 71  LVERLQNHPVLKD-------KLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E++  + QKEV  R++A   +  YGRL+V+  +  +   + ++ PH F
Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P PC  +  L+++   AF  RRKTLR +LK++  +    Q 
Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDAEFEQL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+ NLR E +S+E +  + N++ D Q
Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267


>gi|168187487|ref|ZP_02622122.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund]
 gi|169294621|gb|EDS76754.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund]
          Length = 281

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/267 (36%), Positives = 140/267 (52%), Gaps = 13/267 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y     K +GQNFL D N+L  I   S   +   VIEIG G G LT+ LL   A
Sbjct: 7   KDVVQKYNFKFTKSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLK-KA 65

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V  IE D    PIL +     PN  ++I  DALKVDF +       ++++ANLPY + 
Sbjct: 66  KRVCAIELDSDLIPILTEELKDFPN-FKLIHKDALKVDFNEIIGDEKSVKVVANLPYYVT 124

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +        ++SLT++ QKEV ERI ++ N   YG LS+L  +     ++  +
Sbjct: 125 TPIIARLLKEGYK---FKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTEILRKV 181

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLG--- 245
            P  F P PKV S +I       P       E   KI +++F  RRKTLR ++K LG   
Sbjct: 182 PPTCFIPQPKVDSIIIKLDRLDEPRVKVKDKELFFKIVRQSFNMRRKTLRNAIKSLGDVS 241

Query: 246 GENL---LHQAGIETNLRAENLSIEDF 269
           GEN+    + AGI+   R E LS+++F
Sbjct: 242 GENIEKVFNDAGIDPRRRGETLSLQEF 268


>gi|322834455|ref|YP_004214482.1| dimethyladenosine transferase [Rahnella sp. Y9602]
 gi|321169656|gb|ADW75355.1| dimethyladenosine transferase [Rahnella sp. Y9602]
          Length = 275

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 153/278 (55%), Gaps = 16/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN++ H       H+    +K  GQNFL D  ++  I  +   + G  V+EIG G   LT
Sbjct: 1   MNSRVHQ-----GHFA---RKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSPIRI 121
           + + +     + VIE D+     L++ + +   +L +IQ DA+K++F E    +  P+R+
Sbjct: 53  EPVAS-RLDSMTVIELDRDLATRLEN-NPKFQGKLRVIQSDAMKINFGELSEELGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+     T+    + +  + QKEV  R+ A  NS  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLF---TYTNAIKDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  +PH + P P   +  L ++T +AF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPESFTPAPKVESAVVRLVPHEVIPYPVPDIRILSRLTTDAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SL  L     + + G++ ++RAEN+S+E FC++ N L+
Sbjct: 228 SLGHLFTPEQMTELGLDLSMRAENISVEQFCKLANWLS 265


>gi|213967675|ref|ZP_03395822.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato T1]
 gi|301382735|ref|ZP_07231153.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063470|ref|ZP_07255011.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato K40]
 gi|213927451|gb|EEB60999.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato T1]
          Length = 268

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 141/259 (54%), Gaps = 7/259 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  +L KI  +  +     ++EIG G G LT+ LL  GA ++ V+E D+ 
Sbjct: 10  RKRFGQNFLHDAGVLDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLDVVELDKD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+F+ +   
Sbjct: 69  LIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F P PKV
Sbjct: 128 S---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKV 184

Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  +G++ +L
Sbjct: 185 DSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITASGVDGSL 244

Query: 260 RAENLSIEDFCRITNILTD 278
           R E L +  F R+ + L++
Sbjct: 245 RPEQLDLAAFVRLADTLSE 263


>gi|119504979|ref|ZP_01627056.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2080]
 gi|119459265|gb|EAW40363.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2080]
          Length = 279

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 133/257 (51%), Gaps = 7/257 (2%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQNFL D  +++ IA +  +     ++EIG G G LT+ L+T G  ++  IE D+
Sbjct: 24  PRKRFGQNFLQDDGVIQAIARAISAHKDDHIVEIGPGQGALTESLVTSGC-QLDAIELDR 82

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L    S HP R  +   DALK D++     S P+R++ NLPYNI T L+F  +  
Sbjct: 83  DLTTGLLAAFSIHP-RFTLHTGDALKFDYKALRADSRPLRVVGNLPYNISTPLIFKLLEN 141

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + Q+EV  R+ AQ  S  +GRL V+  +    + +FD+ P  FFP PK
Sbjct: 142 TA---IIGDMHFMLQREVVTRLAAQPGSKDWGRLGVMAQFYCDVSHLFDVPPEAFFPPPK 198

Query: 201 VTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S ++  IPH   P P C +  L +  Q AF +RRKTLR + K +  +       +   
Sbjct: 199 VQSAIVRLIPHATPPYPDCDVVRLGRTVQMAFAQRRKTLRNNFKGVLNDEAFASVDVTPT 258

Query: 259 LRAENLSIEDFCRITNI 275
            RAE L +E F  ++ +
Sbjct: 259 ARAETLRLEQFVALSRL 275


>gi|297516941|ref|ZP_06935327.1| dimethyladenosine transferase [Escherichia coli OP50]
          Length = 273

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 147/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  IA +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIASAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|157960690|ref|YP_001500724.1| dimethyladenosine transferase [Shewanella pealeana ATCC 700345]
 gi|189028818|sp|A8H0V2|RSMA_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157845690|gb|ABV86189.1| dimethyladenosine transferase [Shewanella pealeana ATCC 700345]
          Length = 267

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 152/283 (53%), Gaps = 21/283 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D N++ +I  +    +   ++EIG G   LT
Sbjct: 1   MSNKVH-----LGH---TARKRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119
           + + + G  K+IV+E D+     LK    +HP   ++LEI Q DALK DF +       +
Sbjct: 53  EPVAS-GIDKLIVVELDKDLVERLK----EHPVLKDKLEIHQGDALKFDFNQLVREDKQM 107

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++  NLPYNI T L+F+      +    E++  + QKEV  R++A   +  YGRL+V+  
Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAQHIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQ 164

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237
           +  +   + ++ P  F P PKV S V+  +P+ + P PC  ++ L+ +T  AF  RRKTL
Sbjct: 165 YHCQVMPVLEVPPGCFTPPPKVDSAVVRLVPYKVKPWPCKDVDLLRNLTTTAFNMRRKTL 224

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           R +LK+L  +      GI+  LR E +S+E +  + N + D +
Sbjct: 225 RNNLKQLLSDEDFAVLGIDATLRPEQISVEQYVAMANHVFDRK 267


>gi|312863719|ref|ZP_07723957.1| dimethyladenosine transferase [Streptococcus vestibularis F0396]
 gi|322515990|ref|ZP_08068928.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC
           49124]
 gi|311101255|gb|EFQ59460.1| dimethyladenosine transferase [Streptococcus vestibularis F0396]
 gi|322125525|gb|EFX96866.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC
           49124]
          Length = 290

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 152/283 (53%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D++  PIL+D    H N +++I +D LK D +    +F N + PI+++ANLP
Sbjct: 69  AEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PF-EEFVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI DF R+++ L +
Sbjct: 245 FGKSEEVKNKLEQALENATIKPSIRGEALSISDFARLSDALRE 287


>gi|253995957|ref|YP_003048021.1| dimethyladenosine transferase [Methylotenera mobilis JLW8]
 gi|253982636|gb|ACT47494.1| dimethyladenosine transferase [Methylotenera mobilis JLW8]
          Length = 257

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 142/264 (53%), Gaps = 11/264 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K I KK  GQNFL D  ++  + ++        ++EIG G G LTQ L+      + V+E
Sbjct: 2   KHIAKKRFGQNFLTDQGVISSLVDAISPKANDLMVEIGPGLGALTQPLMQ-QLDMLHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     ++       N++ I   DALK DF    N    IR++ NLPYNI T +LF+ 
Sbjct: 61  VDRDIISWMEKTYVH--NKITIHNSDALKFDFSSLGN---AIRVVGNLPYNISTPILFHL 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++          +  + QKEV ER+ A  ++  YGRLSV+  +R +   +F + P  F P
Sbjct: 116 LNNVAS---IIDMHFMLQKEVVERMVASPSTAAYGRLSVMLQYRLQMEYLFTVPPEAFDP 172

Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S  +  +PH + P P   E+L  ++   AFG+RRKTLR +LK L  +       +
Sbjct: 173 APKVESAFVRCVPHASLPHPADDEALFAQVVTAAFGQRRKTLRNTLKGLLDDEGFKALAL 232

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
           ++ LRAENLS+ DF  I+N L+ N
Sbjct: 233 DSTLRAENLSVADFAGISNYLSQN 256


>gi|300362465|ref|ZP_07058641.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03]
 gi|300353456|gb|EFJ69328.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03]
          Length = 296

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 153/287 (53%), Gaps = 22/287 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  QAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPILKD------ISSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120
            KV+  E DQ    ILK+         +  NR +++  D LK +F K    F +++  ++
Sbjct: 74  -KVLAYEVDQDLPEILKNELPQKVAGEELSNRFKLVMKDVLKANFTKDSDGFLDLNKSVK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPY I T ++FN I ++     + SLTL+ QKEV ER+ A+  +  YG L++    
Sbjct: 133 IVANLPYYITTPIIFNLIKSNLA---FSSLTLMMQKEVAERLVAKPKTKEYGPLTIAVQS 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238
           R    +  ++    F P PKV S V+   P L   P   +      + +  F +RRKTL 
Sbjct: 190 RMNVKLAEEVKSTSFMPRPKVDSAVVVLTP-LTEKPDIDDYSFFDHVVKMCFAQRRKTLA 248

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +LK L       E +++  G++  +R E L++  F  + ++L D Q
Sbjct: 249 NNLKSLVKDRDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQQ 295


>gi|261403903|ref|YP_003240144.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10]
 gi|261280366|gb|ACX62337.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10]
          Length = 294

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/282 (36%), Positives = 154/282 (54%), Gaps = 23/282 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+S +    KK +GQNFL+D NIL KI E++G  +    +EIG G G LT+ L    A
Sbjct: 14  KEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQT-A 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
             V  +E DQ+  PIL+++   + N + +   D LKVD    F + F   S + ++ANLP
Sbjct: 73  GTVTAVEIDQRLIPILREVLEPYGN-VRVHHGDVLKVDLHELFRQDFADVSKVSVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   +  +  P   E++ ++ QKEV ER+ A   S  YG LS+   + ++  +
Sbjct: 132 YYVTTPILMKLLE-EKLP--LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQYYSEPKL 188

Query: 187 MFDISPH-VFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK 242
           +  I PH VF P P V S VI       P P  +E  +   ++ Q +F +RRKT+  +LK
Sbjct: 189 VC-IVPHTVFIPQPNVESAVIRLAVREQP-PVRVEDERFFFEVVQASFAQRRKTIANNLK 246

Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   R   E LL +AGIE + R E LSIE++ R++N+L
Sbjct: 247 SRFFPGEGRERLEQLLQEAGIEPSRRGETLSIEEYARLSNVL 288


>gi|134297956|ref|YP_001111452.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
 gi|134050656|gb|ABO48627.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
          Length = 293

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 148/283 (52%), Gaps = 24/283 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K I++ Y    +K +GQNFL+D NI+ KI  ++    G  V EIG G G LTQ  L   
Sbjct: 10  VKDIINTYGFRVRKALGQNFLMDANIIDKIVNAAELTPGDLVFEIGPGLGVLTQR-LARS 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK---------FFNISSPIR 120
           A KVI +E D+   PIL +  +   N  +++  DALKVDF++         F   +   +
Sbjct: 69  AGKVIAVEIDKNLLPILTETLTDFDN-AQVVHADALKVDFDRLAAEHTEGGFGKGAKSFK 127

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T +L + +++      ++ L ++ QKEV ER+ A      YG LS+   +
Sbjct: 128 LVANLPYYITTPILMHLLTSGFN---FDCLVVMMQKEVAERLQASPGGKDYGSLSIAVQY 184

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTL 237
            T   ++  +   VFFP+P V S VI       P P  LES +   K+ + AFG+RRKTL
Sbjct: 185 YTVPEIVTRVPKTVFFPAPDVESAVIQLTRRKRP-PVTLESEEVFFKVVRAAFGQRRKTL 243

Query: 238 RQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRITN 274
             SL   G         +L +A I+   R E L+IEDF  + N
Sbjct: 244 LNSLTGSGLAEKETWIKILEEAAIDPTRRGETLTIEDFANLAN 286


>gi|323181748|gb|EFZ67161.1| dimethyladenosine transferase [Escherichia coli 1357]
 gi|323945789|gb|EGB41836.1| dimethyladenosine transferase [Escherichia coli H120]
          Length = 273

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 147/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+ ++RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSAEVLTGMGIDPSMRAENISVAQYCQMANYLAEN 267


>gi|237803359|ref|ZP_04590944.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025340|gb|EGI05396.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 268

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 143/266 (53%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ V
Sbjct: 4   QYQHRARKRFGQNFLHDAGVIDKILRAIRAKSEERLLEIGPGQGALTEGLLNSGA-QLDV 62

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+   P L    +  PN   + Q DALK DF         +R++ NLPYNI T L+F
Sbjct: 63  VELDKDLIPTLNSQFAGKPN-FSLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLIF 121

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F
Sbjct: 122 HLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAF 178

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S ++  +PH   +P   +    L+++ +EAF +RRKTLR +LK L   + +  
Sbjct: 179 NPPPKVDSAIVRLVPH-ETLPHQAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R+ + L++
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263


>gi|218703312|ref|YP_002410831.1| dimethyladenosine transferase [Escherichia coli UMN026]
 gi|298378654|ref|ZP_06988538.1| dimethyladenosine transferase [Escherichia coli FVEC1302]
 gi|226732578|sp|B7N7S6|RSMA_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218430409|emb|CAR11276.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli UMN026]
 gi|298280988|gb|EFI22489.1| dimethyladenosine transferase [Escherichia coli FVEC1302]
          Length = 273

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|218687929|ref|YP_002396141.1| dimethyladenosine transferase [Escherichia coli ED1a]
 gi|254807868|sp|B7MNR0|RSMA_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218425493|emb|CAR06275.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli ED1a]
          Length = 273

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F E    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSAEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|170761464|ref|YP_001785410.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|259494246|sp|B1KRY8|RSMA_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|169408453|gb|ACA56864.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 275

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 152/276 (55%), Gaps = 14/276 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I++ Y+    K +GQNFL+D ++L+ I + +      TVIEIG G G LT+ LL   A
Sbjct: 4   KEIVNKYEFKFNKNLGQNFLVDESVLEDIIKGAEISKEDTVIEIGPGVGTLTKELLE-RA 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V  IE D    PIL++   ++ N   +I  DALK+DF         I+++ANLPY + 
Sbjct: 63  KEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNGLMENKDSIKLVANLPYYVT 121

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +        ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  +
Sbjct: 122 TPIISRLLKEKCD---FKSLTIMIQKEVAERIDAEPNCKEYGSLTVLVQYYCNTEIIRKV 178

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRL--- 244
           SP+ F P PKV S VI  +  L+     ++S K    + + +F  RRKTL  SLK L   
Sbjct: 179 SPNCFIPRPKVDSIVIK-LDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNID 237

Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273


>gi|218547501|ref|YP_002381292.1| dimethyladenosine transferase [Escherichia fergusonii ATCC 35469]
 gi|226732582|sp|B7LVU5|RSMA_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218355042|emb|CAQ87648.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia fergusonii ATCC 35469]
          Length = 273

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|66047854|ref|YP_237695.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae
           B728a]
 gi|75500351|sp|Q4ZMG5|RSMA_PSEU2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|63258561|gb|AAY39657.1| RRNA 16S rRNA dimethylase [Pseudomonas syringae pv. syringae B728a]
          Length = 268

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGADPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R+ + L++
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263


>gi|157156598|ref|YP_001461223.1| dimethyladenosine transferase [Escherichia coli E24377A]
 gi|293403126|ref|ZP_06647223.1| dimethyladenosine transferase [Escherichia coli FVEC1412]
 gi|300900925|ref|ZP_07119060.1| dimethyladenosine transferase [Escherichia coli MS 198-1]
 gi|301019759|ref|ZP_07183905.1| dimethyladenosine transferase [Escherichia coli MS 69-1]
 gi|331681437|ref|ZP_08382074.1| dimethyladenosine transferase [Escherichia coli H299]
 gi|166987692|sp|A7ZHE4|RSMA_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157078628|gb|ABV18336.1| dimethyladenosine transferase [Escherichia coli E24377A]
 gi|291430041|gb|EFF03055.1| dimethyladenosine transferase [Escherichia coli FVEC1412]
 gi|300355588|gb|EFJ71458.1| dimethyladenosine transferase [Escherichia coli MS 198-1]
 gi|300399096|gb|EFJ82634.1| dimethyladenosine transferase [Escherichia coli MS 69-1]
 gi|331081658|gb|EGI52819.1| dimethyladenosine transferase [Escherichia coli H299]
          Length = 273

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|302185943|ref|ZP_07262616.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae
           642]
          Length = 268

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNSQFAGKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R+ + L++
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263


>gi|219870955|ref|YP_002475330.1| dimethyladenosine transferase [Haemophilus parasuis SH0165]
 gi|219691159|gb|ACL32382.1| dimethyladenosine transferase [Haemophilus parasuis SH0165]
          Length = 286

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 150/288 (52%), Gaps = 25/288 (8%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+ N+K H     L H     +K  GQNFL D N++  I  +        ++EIG G G 
Sbjct: 1   MSSNSKKH-----LGH---TARKRFGQNFLHDQNVIHNIVAAINPQQNQFLLEIGPGLGA 52

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-- 115
           LT+ +  L    + V+E D+     L+     HP    +L +I+ DAL+ DF  +F+   
Sbjct: 53  LTEPVADL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIEQDALRFDFRAYFDSLA 107

Query: 116 --SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +++  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 LNGKAVKVFGNLPYNISTPLMFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  +P+   P P   +  L ++T +AF 
Sbjct: 165 LTIMAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPYKTLPYPVKDIYWLNRVTTQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   G++ N RAENLS+ D+ R+ N L DN
Sbjct: 225 QRRKTLRNALATLFSVEQLEALGVDLNARAENLSLADYARLANWLCDN 272


>gi|56461332|ref|YP_156613.1| dimethyladenosine transferase [Idiomarina loihiensis L2TR]
 gi|62900479|sp|Q5QVN7|RSMA_IDILO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56180342|gb|AAV83064.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Idiomarina loihiensis L2TR]
          Length = 288

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/276 (36%), Positives = 152/276 (55%), Gaps = 21/276 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-G 69
           KT L H     +K  GQNFL D  I+++I ++   L G  +IEIG G   LT+  +   G
Sbjct: 15  KTHLGHRA---RKRFGQNFLNDDYIIEQIVDAINPLPGENLIEIGPGLAALTEPTVDRSG 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             KVI I++D      L +    HP   ++LE+IQ DAL +DF +F     P R+  NLP
Sbjct: 72  HLKVIEIDRD------LVERLQHHPFLSSKLEVIQADALSIDFSQFAE-EGPARVFGNLP 124

Query: 127 YNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           YNI T L+F+ +  AD      + +  + QKEV +R+ A+  S  YGR+SV      K T
Sbjct: 125 YNISTPLIFHLLKFADDV----KDMHFMLQKEVVDRLAAEPGSKSYGRISVGVQQACKVT 180

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKR 243
            +  + P  F P PKV S+V+   P+  +P P   ++ L  +   AF +RRKT+R +LK+
Sbjct: 181 PVVAVPPSAFTPPPKVESSVVRLEPYAESPHPVKDKAQLHSLCLTAFNQRRKTIRNNLKQ 240

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L     +   GI+   R E LS++D+CRI++ LT++
Sbjct: 241 LVPAEQMEALGIDPGARPETLSVDDYCRISDWLTEH 276


>gi|330970842|gb|EGH70908.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 268

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R+ + L++
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263


>gi|259501903|ref|ZP_05744805.1| dimethyladenosine transferase [Lactobacillus antri DSM 16041]
 gi|259170080|gb|EEW54575.1| dimethyladenosine transferase [Lactobacillus antri DSM 16041]
          Length = 297

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 151/287 (52%), Gaps = 22/287 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y I  KK  GQNFL DLN+LK I  ++       VIEIG G G LT+ L    A
Sbjct: 14  RAIMEKYGIHTKKGFGQNFLTDLNVLKNIVSAAEISKDDNVIEIGPGIGALTEQLAQ-AA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
            +V+ +E DQ   P+L ++ + + N + ++  D L+ +      ++F + + P++++ANL
Sbjct: 73  GEVLALEIDQDLIPVLAEVLAPYDN-VTVLNQDVLQANLPELIKQQFADPAKPVKVVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + +L N ++A   P  W ++ ++ QKEV +R+TAQ  +  YG L++   ++  A 
Sbjct: 132 PYYITSPILMNLLAA---PVDWAAICVMMQKEVAQRLTAQPGTKQYGALTLAIEYQMTAE 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLK 242
           + F++S  VF P+P V S ++   P   P+   P   + L    +  F  RRK+L  +L+
Sbjct: 189 IAFNVSRRVFVPAPNVDSAIVVLKPRATPLAVEPFDKQKLFGFIRACFAHRRKSLWNNLQ 248

Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
              G         + +L Q  I    R E L++E F ++ N L   Q
Sbjct: 249 AAVGKQPAVKEQLQAILTQLAISPQTRPERLTLEQFIKLANALHAAQ 295


>gi|126664694|ref|ZP_01735678.1| dimethyladenosine transferase [Marinobacter sp. ELB17]
 gi|126631020|gb|EBA01634.1| dimethyladenosine transferase [Marinobacter sp. ELB17]
          Length = 277

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 139/258 (53%), Gaps = 8/258 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++++I  S       +++EIG G G +T  +L +  R + V+E D+ 
Sbjct: 10  RKRFGQNFLHDPGVIERIVRSIAPKPDQSIVEIGPGLGAITAEILAVNPR-LQVVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PIL+     +P    I Q DALK DF +      P+RII NLPYNI T L+F+ ++  
Sbjct: 69  LIPILRTKFFNYPE-FRIHQADALKFDFNELVG-EQPLRIIGNLPYNISTPLIFHLLAHS 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +R+ A     +YGRL ++T +  K   +F++ P  F P+PKV
Sbjct: 127 G---VVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCKVQPLFEVGPDAFRPAPKV 183

Query: 202 TSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++  +P+   P P   L +L+ + + AF  RRKTLR++L        L Q GI   L
Sbjct: 184 DSFIVRLVPYATLPHPAKDLGTLQAVVRSAFNARRKTLRKALGGFVTAAELQQLGINDGL 243

Query: 260 RAENLSIEDFCRITNILT 277
           R ENL + ++  I + L 
Sbjct: 244 RPENLGLAEYVAIADYLV 261


>gi|55823689|ref|YP_142130.1| dimethyladenosine transferase [Streptococcus thermophilus CNRZ1066]
 gi|62900468|sp|Q5LY12|RSMA_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|55739674|gb|AAV63315.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus
           thermophilus CNRZ1066]
 gi|312279113|gb|ADQ63770.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus
           thermophilus ND03]
          Length = 290

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 151/283 (53%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D++  PIL+D    H N +++I +D LK D +    +F N   PI+++ANLP
Sbjct: 69  SEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFSE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         +  L  A I+ ++R E LSI DF R+++ L +
Sbjct: 245 FGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287


>gi|302130722|ref|ZP_07256712.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 268

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 141/259 (54%), Gaps = 7/259 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ V+E D+ 
Sbjct: 10  RKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLDVVELDKD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+F+ +   
Sbjct: 69  LIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F P PKV
Sbjct: 128 S---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKV 184

Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  +G++ +L
Sbjct: 185 DSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITASGVDGSL 244

Query: 260 RAENLSIEDFCRITNILTD 278
           R E L +  F R+ + L++
Sbjct: 245 RPEQLDLAAFVRLADTLSE 263


>gi|117921647|ref|YP_870839.1| dimethyladenosine transferase [Shewanella sp. ANA-3]
 gi|166221704|sp|A0L064|RSMA_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|117613979|gb|ABK49433.1| dimethyladenosine transferase [Shewanella sp. ANA-3]
          Length = 268

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 144/267 (53%), Gaps = 19/267 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ- 80
           +K  GQNFL D N++ +I  +    +   ++EIG G G LT+ + T     + V+E D+ 
Sbjct: 12  RKRFGQNFLTDDNVINRIVGAIVPDNDHVMVEIGPGLGALTEPVAT-AIDNLTVVELDRD 70

Query: 81  -----QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
                Q  P+LKD       +L I Q DAL+ DF +       +++  NLPYNI T L+F
Sbjct: 71  LVERLQNHPVLKD-------KLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E++  + QKEV  R++A   +  YGRL+V+  +  +   + ++ PH F
Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P PC  +  L+++   AF  RRKTLR +LK++  +    Q 
Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+ NLR E +S+E +  + N++ D Q
Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267


>gi|116511486|ref|YP_808702.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107140|gb|ABJ72280.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 294

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 146/268 (54%), Gaps = 18/268 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D NIL KI E++     + VIEIG G G+LTQ LL   A +V+  E D+ 
Sbjct: 27  KKKFGQNFLTDHNILTKITETADLSKEVNVIEIGPGIGSLTQYLLEEAA-EVMAFEIDKS 85

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNW 137
             PIL++  + + N   ++ +D LKVD     +KF N + PI+++ANLPY I T +L + 
Sbjct: 86  LIPILEETMAPYDN-FTLVSEDILKVDLLSEIQKFKNPNLPIKVVANLPYYITTPILMHL 144

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I +    PF E   ++ QKEV +RI A+  +  YG LS+   +  +A++ F +   VF P
Sbjct: 145 IESKI--PFSE-FVVMMQKEVADRIAARPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201

Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG-------EN 248
           +P V S ++  +    P+    +     K    +F  RRKTL  +++   G       E 
Sbjct: 202 APNVDSAILKMVRREEPLVEVEDEEWFFKTMHSSFVHRRKTLMNNMQAAFGKESKPEIEK 261

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
           LL QA I   +R E LSIE+F ++ + L
Sbjct: 262 LLAQAEISPTIRGEALSIEEFAKLADAL 289


>gi|331270584|ref|YP_004397076.1| dimethyladenosine transferase [Clostridium botulinum BKT015925]
 gi|329127134|gb|AEB77079.1| dimethyladenosine transferase [Clostridium botulinum BKT015925]
          Length = 281

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 146/273 (53%), Gaps = 15/273 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+  Y     K +GQNFL D  +L  I + S   +   VIEIG G G LT+ LL   A
Sbjct: 7   KEIVQKYNFKFTKSLGQNFLTDQTVLDDIVDGSEVCEEDFVIEIGPGVGTLTKELLK-KA 65

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +KV  +E D    PIL++   +  N  ++I  DALK+DF++       ++++ANLPY + 
Sbjct: 66  KKVCAVELDSNLIPILQEELKEFDN-FQLIHKDALKIDFKELIGDEKSVKVVANLPYYVT 124

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +        ++SLT++ QKEV ERI +Q N   YG LS+L  +     ++  +
Sbjct: 125 TPIIARLLKEGYK---FKSLTIMIQKEVAERIASQPNCKEYGALSILVQYYCDTRIIRKV 181

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGG- 246
            P  F P PKV S +I  +  LN +   +   E   KI +++F  RRKTLR ++K LG  
Sbjct: 182 PPTCFIPQPKVDSIIIR-LDRLNELRVKVKDEELFFKIVRQSFNMRRKTLRNAIKSLGFV 240

Query: 247 -----ENLLHQAGIETNLRAENLSIEDFCRITN 274
                E + + A I+   R E L++E+F ++ +
Sbjct: 241 SSDNIEKVFNDADIDPRRRGETLTLEEFGKLAD 273


>gi|28867779|ref|NP_790398.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|33516927|sp|Q88A46|RSMA_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|28851014|gb|AAO54093.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331017631|gb|EGH97687.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 268

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 141/259 (54%), Gaps = 7/259 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ V+E D+ 
Sbjct: 10  RKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLDVVELDKD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+F+ +   
Sbjct: 69  LIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F P PKV
Sbjct: 128 S---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKV 184

Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  +G++ +L
Sbjct: 185 DSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITASGVDGSL 244

Query: 260 RAENLSIEDFCRITNILTD 278
           R E L +  F R+ + L++
Sbjct: 245 RPEQLDLAAFVRLADTLSE 263


>gi|167622855|ref|YP_001673149.1| dimethyladenosine transferase [Shewanella halifaxensis HAW-EB4]
 gi|189028817|sp|B0TV52|RSMA_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|167352877|gb|ABZ75490.1| dimethyladenosine transferase [Shewanella halifaxensis HAW-EB4]
          Length = 267

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 152/286 (53%), Gaps = 27/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D N++ +I  +    +   ++EIG G   LT
Sbjct: 1   MSNKVH-----LGH---TARKRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           + + + G  K+IV+E D+      Q  P+LKD       +LEI Q DALK DF +     
Sbjct: 53  EPVAS-GIDKLIVVELDKDLVERLQTHPVLKD-------KLEIHQGDALKFDFNQLVRED 104

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +++  NLPYNI T L+F+      +    E++  + QKEV  R++A   +  YGRL+V
Sbjct: 105 KQMKVFGNLPYNISTPLMFHLFE---FAQHIENMHFMLQKEVVLRLSASPGTKAYGRLTV 161

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +P+ N P PC  ++ L+ +T  AF  RR
Sbjct: 162 MAQYHCQVMPVLEVPPGCFTPPPKVDSAVVRLVPYKNKPWPCKDVDLLRNLTTTAFNMRR 221

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTLR +LK+L  +    + GI+  LR E + ++ +  + N + D +
Sbjct: 222 KTLRNNLKQLLSDEDFAELGIDATLRPEQIRVDQYVAMANHVFDKK 267


>gi|306824464|ref|ZP_07457810.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433251|gb|EFM36221.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 290

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 149/281 (53%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQYIQNFKNPELPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     KI++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDEQFFFKISKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+E+F  +++ L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLSDAL 285


>gi|71735918|ref|YP_272932.1| dimethyladenosine transferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257483106|ref|ZP_05637147.1| dimethyladenosine transferase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|118600884|sp|Q48NT7|RSMA_PSE14 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71556471|gb|AAZ35682.1| dimethyladenosine transferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320326009|gb|EFW82067.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320332056|gb|EFW87992.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881716|gb|EGH15865.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330985796|gb|EGH83899.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011661|gb|EGH91717.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 268

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL       PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R+ + L++
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263


>gi|270292088|ref|ZP_06198303.1| dimethyladenosine transferase [Streptococcus sp. M143]
 gi|270279616|gb|EFA25458.1| dimethyladenosine transferase [Streptococcus sp. M143]
          Length = 290

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 149/281 (53%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPELPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +   +P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPDPAVAVEDEQFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+E+F  + + L
Sbjct: 245 FGKTEEIKDKLTKALDQAGLSPSVRGEALSLEEFASLADAL 285


>gi|289676165|ref|ZP_06497055.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae
           FF5]
          Length = 268

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R+ + L++
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263


>gi|167854678|ref|ZP_02477458.1| dimethyladenosine transferase [Haemophilus parasuis 29755]
 gi|167854215|gb|EDS25449.1| dimethyladenosine transferase [Haemophilus parasuis 29755]
          Length = 286

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 150/288 (52%), Gaps = 25/288 (8%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+ N+K H     L H     +K  GQNFL D N++  I  +        ++EIG G G 
Sbjct: 1   MSSNSKKH-----LGH---TARKRFGQNFLHDQNVIHNIVAAINPQQNQFLLEIGPGLGA 52

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI-- 115
           LT+ +  L    + V+E D+     L+     HP    +L +I+ DAL+ DF  +F+   
Sbjct: 53  LTEPVADL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIEQDALRFDFRAYFDSLA 107

Query: 116 --SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +++  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 LNGKAVKVFGNLPYNISTPLMFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  +P+   P P   +  L ++T +AF 
Sbjct: 165 LTIMAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPYKTLPYPVKDIYWLNRVTTQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   G++ N RAENLS+ D+ R+ N L DN
Sbjct: 225 QRRKTLRNALATLFNVEQLEALGVDLNARAENLSLADYARLANWLCDN 272


>gi|259907385|ref|YP_002647741.1| dimethyladenosine transferase [Erwinia pyrifoliae Ep1/96]
 gi|224963007|emb|CAX54490.1| Dimethyladenosine transferase [Erwinia pyrifoliae Ep1/96]
 gi|283477218|emb|CAY73125.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Erwinia pyrifoliae DSM 12163]
          Length = 275

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 147/283 (51%), Gaps = 26/283 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN++ H       H+    +K  GQNFL D  I+  I  +     G  V+EIG G G LT
Sbjct: 1   MNSRVHQ-----GHFA---RKRFGQNFLNDRYIIDSIVNAIHPQRGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R   + V+E D+     L+     HP    +L I Q DA+  DF        
Sbjct: 53  E---PVGERLDSMTVVELDRDLAARLQT----HPFLGPKLTIFQQDAMTFDFATLAQEKG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   S  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P+PKV S V+  +P+  P      + +L +IT EAFGKRR
Sbjct: 163 MAQYYCQVIPVLEVPPESFTPAPKVDSAVVRLMPYAQPPHPVDDIRALSRITTEAFGKRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTLR SL  L   ++L +  I+  LRAEN+++  +C++ N LT
Sbjct: 223 KTLRNSLGHLFTTDVLAEMNIDPTLRAENITVAQYCQLANWLT 265


>gi|55821771|ref|YP_140213.1| dimethyladenosine transferase [Streptococcus thermophilus LMG
           18311]
 gi|62900469|sp|Q5M2L6|RSMA_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|55737756|gb|AAV61398.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus
           thermophilus LMG 18311]
          Length = 290

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 150/283 (53%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D++  PIL+D    H N +++I +D LK D +    +F N   PI+++ANLP
Sbjct: 69  SEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +     M
Sbjct: 128 YYITTPILMHLIESKI--PFSE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTTKM 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         +  L  A I+ ++R E LSI DF R+++ L +
Sbjct: 245 FGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287


>gi|313123062|ref|YP_004033321.1| ribosomal RNA small subunit methyltransferase a [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312279625|gb|ADQ60344.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 296

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 145/283 (51%), Gaps = 20/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            I++ Y +  KK +GQNFL+DL+ ++ I  ++G   G  V+E+G G G+LT+ LL  G  
Sbjct: 15  AIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGG- 73

Query: 72  KVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIRI 121
           KV   E D     IL +     +  Q    R ++I  D LK DF      FF++S P+++
Sbjct: 74  KVAAYEVDHSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKV 133

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++FN + +      + SLTL+ QKEV ER+ AQ  S  YG LS+    +
Sbjct: 134 VANLPYYITTPIIFNLLESSLD---FTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQ 190

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240
               +  ++    F P PKV S V+   P   P      +   ++ +  F +RRKTL  +
Sbjct: 191 MSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANN 250

Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK L       E LL    +    R E L+I DF RI+  + +
Sbjct: 251 LKTLLPDKEDREKLLADLDLGPRQRPEQLAISDFIRISQAIAE 293


>gi|331265645|ref|YP_004325275.1| dimethyladenosine transferase [Streptococcus oralis Uo5]
 gi|326682317|emb|CBY99934.1| dimethyladenosine transferase [Streptococcus oralis Uo5]
          Length = 290

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 150/281 (53%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPGLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +   +P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPDPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+E+F  +++ L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLSDAL 285


>gi|218693523|ref|YP_002401190.1| dimethyladenosine transferase [Escherichia coli 55989]
 gi|254807867|sp|B7L4H4|RSMA_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218350255|emb|CAU95938.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli 55989]
          Length = 273

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSAEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|323950949|gb|EGB46826.1| dimethyladenosine transferase [Escherichia coli H252]
          Length = 273

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F E    + 
Sbjct: 53  E---PIGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|315644358|ref|ZP_07897498.1| dimethyladenosine transferase [Paenibacillus vortex V453]
 gi|315280235|gb|EFU43527.1| dimethyladenosine transferase [Paenibacillus vortex V453]
          Length = 294

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 157/288 (54%), Gaps = 24/288 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+S +    KK +GQNFL+D NIL KI E++G  +    +EIG G G LT+ L    A
Sbjct: 14  KEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQT-A 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
             V  IE DQ+  PIL+++   + N +++   D LKVD    F++ F   S + ++ANLP
Sbjct: 73  GTVTAIEIDQRLIPILREVLEPYEN-VKVHHGDVLKVDLHELFQQDFGGVSKVSVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   +  +  P   E++ ++ QKEV ER+ A   S  YG LS+   + ++  +
Sbjct: 132 YYVTTPILMKLLE-EKLP--LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQYYSEPKL 188

Query: 187 MFDISPH-VFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLK 242
           +  I PH VF P P V S VI       P P  +E      ++ Q +F +RRKT+  +LK
Sbjct: 189 VC-IVPHTVFIPQPNVASAVIRLAVREEP-PVSVEDEGFFFEVVQASFAQRRKTIANNLK 246

Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
                   R   E LL +AGI  + R E LSIE++ +++N+L  N DI
Sbjct: 247 SRFFAGEGRERLEQLLQEAGIVPSRRGETLSIEEYAKLSNVLY-NADI 293


>gi|300715279|ref|YP_003740082.1| Dimethyladenosine transferase [Erwinia billingiae Eb661]
 gi|299061115|emb|CAX58222.1| Dimethyladenosine transferase [Erwinia billingiae Eb661]
          Length = 279

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 145/282 (51%), Gaps = 26/282 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  I+  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDQYIIDSIVSAIHPQKGEAIVEIGPGLGALT 52

Query: 63  QML-LTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NISS 117
           + +   L A  VI I++D      L      HP    +L I Q DA+  DF ++      
Sbjct: 53  EPVGERLDAMTVIEIDRD------LAARLQTHPFLGPKLTIFQQDAMAFDFAEYAREKGQ 106

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            +R+  NLPYNI T L+F+  S  T       +  + QKEV  R+ A   S  YGRL+V+
Sbjct: 107 SLRVFGNLPYNISTPLMFHLFSYATA---IRDMHFMLQKEVVNRLVAGPGSKAYGRLTVM 163

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRR 234
             +  +   + ++ P  F P+PKV S V+  +PH    +P+   +  L +IT EAFGKRR
Sbjct: 164 AQYYCQVIPVLEVPPESFTPAPKVDSAVVRLMPHAKIEHPV-TDMRVLTRITTEAFGKRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           KTLR SL  L    +L +  I+  LRAEN+++  +C++ N L
Sbjct: 223 KTLRNSLGHLFSLEVLQEMNIDPTLRAENITVAQYCQLANWL 264


>gi|251788203|ref|YP_003002924.1| dimethyladenosine transferase [Dickeya zeae Ech1591]
 gi|247536824|gb|ACT05445.1| dimethyladenosine transferase [Dickeya zeae Ech1591]
          Length = 272

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 147/286 (51%), Gaps = 32/286 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQ---HP---NRLEIIQDDALKVDFEKFFN 114
              + +G R     V+E D       +D++++   HP   ++L IIQ DA+ VDF     
Sbjct: 53  ---IPVGERIDSFTVVELD-------RDLAARLEVHPTLRDKLTIIQQDAMTVDFAALSQ 102

Query: 115 -ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  +S  YGR
Sbjct: 103 QAGQPLRVFGNLPYNISTPLMFHLFS---YTQAIRDMHFMLQKEVVNRLVAGPDSKAYGR 159

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFG 231
           L+V+  +  +   + ++ P  F P+PKV S V+  +PH  +P P      L +IT EAF 
Sbjct: 160 LTVMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTTSPYPTVDTRILSRITTEAFN 219

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +RRKTLR SL  L     L    ++ N RAEN++I  +CR+   LT
Sbjct: 220 QRRKTLRNSLGNLFTPEQLTALEVDQNARAENVTIAQYCRLAEWLT 265


>gi|289649007|ref|ZP_06480350.1| dimethyladenosine transferase [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 268

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL       PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R+ + L++
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263


>gi|298485300|ref|ZP_07003392.1| Dimethyladenosine transferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160150|gb|EFI01179.1| Dimethyladenosine transferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 268

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL       PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPHSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R+ + L++
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263


>gi|290891124|ref|ZP_06554186.1| hypothetical protein AWRIB429_1576 [Oenococcus oeni AWRIB429]
 gi|290479088|gb|EFD87750.1| hypothetical protein AWRIB429_1576 [Oenococcus oeni AWRIB429]
          Length = 292

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 156/280 (55%), Gaps = 18/280 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ Y +   K +GQNFL+DLN+L++I + +      TVIEIG G G+LT+ L    A
Sbjct: 14  RAILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-AA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V+  E D++  PIL +    + N ++I+  D LK DF   F  +  ++I+ANLPY I 
Sbjct: 73  KQVVAYEIDKKLIPILSETLRPYKN-VKIVNRDILKADF-SIFAKNQSLKIVANLPYYIT 130

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T +LF  +++      ++S+T++ QKEV  R+ A   S  YG LS+   +R    ++  +
Sbjct: 131 TPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILPV 187

Query: 191 SPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           +   F PSP V S V+   P  N    P   E+L KI + +F  RRK+L  +L    G+N
Sbjct: 188 TRKSFMPSPNVDSAVVQLTPKENFQSFPHE-EALFKIIKASFAHRRKSLVNNLLYYFGKN 246

Query: 249 ---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                     + + G + N+R E L++E++ ++ N L++N
Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286


>gi|26245977|ref|NP_752016.1| dimethyladenosine transferase [Escherichia coli CFT073]
 gi|91209113|ref|YP_539099.1| dimethyladenosine transferase [Escherichia coli UTI89]
 gi|110640266|ref|YP_667994.1| dimethyladenosine transferase [Escherichia coli 536]
 gi|117622341|ref|YP_851254.1| dimethyladenosine transferase [Escherichia coli APEC O1]
 gi|191174105|ref|ZP_03035619.1| dimethyladenosine transferase [Escherichia coli F11]
 gi|215485215|ref|YP_002327646.1| dimethyladenosine transferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218556992|ref|YP_002389905.1| dimethyladenosine transferase [Escherichia coli S88]
 gi|227885048|ref|ZP_04002853.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Escherichia coli 83972]
 gi|237704197|ref|ZP_04534678.1| dimethyladenosine transferase [Escherichia sp. 3_2_53FAA]
 gi|300981027|ref|ZP_07175304.1| dimethyladenosine transferase [Escherichia coli MS 45-1]
 gi|300984194|ref|ZP_07176922.1| dimethyladenosine transferase [Escherichia coli MS 200-1]
 gi|301048437|ref|ZP_07195464.1| dimethyladenosine transferase [Escherichia coli MS 185-1]
 gi|306815349|ref|ZP_07449498.1| dimethyladenosine transferase [Escherichia coli NC101]
 gi|312966174|ref|ZP_07780400.1| dimethyladenosine transferase [Escherichia coli 2362-75]
 gi|331645161|ref|ZP_08346272.1| dimethyladenosine transferase [Escherichia coli M605]
 gi|33516938|sp|Q8FL96|RSMA_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600864|sp|Q0TLT6|RSMA_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365024|sp|Q1RGE6|RSMA_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221662|sp|A1A7A0|RSMA_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732573|sp|B7MAH6|RSMA_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807866|sp|B7UI99|RSMA_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|26106374|gb|AAN78560.1|AE016755_60 Dimethyladenosine transferase [Escherichia coli CFT073]
 gi|91070687|gb|ABE05568.1| dimethyladenosine transferase [Escherichia coli UTI89]
 gi|110341858|gb|ABG68095.1| dimethyladenosine transferase [Escherichia coli 536]
 gi|115511465|gb|ABI99539.1| dimethyladenosine transferase [Escherichia coli APEC O1]
 gi|190905599|gb|EDV65224.1| dimethyladenosine transferase [Escherichia coli F11]
 gi|215263287|emb|CAS07602.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218363761|emb|CAR01422.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli S88]
 gi|226902109|gb|EEH88368.1| dimethyladenosine transferase [Escherichia sp. 3_2_53FAA]
 gi|227837877|gb|EEJ48343.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Escherichia coli 83972]
 gi|281177268|dbj|BAI53598.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli SE15]
 gi|294493966|gb|ADE92722.1| dimethyladenosine transferase [Escherichia coli IHE3034]
 gi|300299730|gb|EFJ56115.1| dimethyladenosine transferase [Escherichia coli MS 185-1]
 gi|300306724|gb|EFJ61244.1| dimethyladenosine transferase [Escherichia coli MS 200-1]
 gi|300409063|gb|EFJ92601.1| dimethyladenosine transferase [Escherichia coli MS 45-1]
 gi|305851011|gb|EFM51466.1| dimethyladenosine transferase [Escherichia coli NC101]
 gi|307551898|gb|ADN44673.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli ABU 83972]
 gi|307629627|gb|ADN73931.1| dimethyladenosine transferase [Escherichia coli UM146]
 gi|312289417|gb|EFR17311.1| dimethyladenosine transferase [Escherichia coli 2362-75]
 gi|315285119|gb|EFU44564.1| dimethyladenosine transferase [Escherichia coli MS 110-3]
 gi|315293372|gb|EFU52724.1| dimethyladenosine transferase [Escherichia coli MS 153-1]
 gi|320197502|gb|EFW72116.1| Dimethyladenosine transferase [Escherichia coli WV_060327]
 gi|323955249|gb|EGB51022.1| dimethyladenosine transferase [Escherichia coli H263]
 gi|324008399|gb|EGB77618.1| dimethyladenosine transferase [Escherichia coli MS 57-2]
 gi|324012309|gb|EGB81528.1| dimethyladenosine transferase [Escherichia coli MS 60-1]
 gi|330909903|gb|EGH38413.1| dimethyladenosine transferase [Escherichia coli AA86]
 gi|331045918|gb|EGI18037.1| dimethyladenosine transferase [Escherichia coli M605]
          Length = 273

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F E    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|331661093|ref|ZP_08362025.1| dimethyladenosine transferase [Escherichia coli TA206]
 gi|315298429|gb|EFU57684.1| dimethyladenosine transferase [Escherichia coli MS 16-3]
 gi|331052135|gb|EGI24174.1| dimethyladenosine transferase [Escherichia coli TA206]
          Length = 273

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F E    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|210623277|ref|ZP_03293694.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275]
 gi|210153678|gb|EEA84684.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275]
          Length = 286

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 153/285 (53%), Gaps = 17/285 (5%)

Query: 7   SH-SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           SH + K I+  +     K +GQNFL+D N++ KI + +   +G  VIE+G G G LT+ +
Sbjct: 6   SHRATKDIVDKHGFKFSKSLGQNFLIDDNVIDKIIDGARVKEGDKVIEVGPGIGTLTREM 65

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRII 122
               A KV+ +E D+   PILK+  +   N  E++ +D LKVD  K  +      P+++I
Sbjct: 66  AKR-AEKVVAVEIDKNLIPILKETLADFDN-TEVVNEDILKVDINKLVDEKLSGGPVKLI 123

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++  ++  D   P  + + ++ QKEV +R+ A  ++  YG LSV   +  
Sbjct: 124 ANLPYYITTPIVMKFLEEDI--PVTD-IVVMVQKEVADRMNAVPSTKDYGALSVAVQYYC 180

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRKTLRQS 240
              ++     H+F P PKV STVI   I          E L  K  + AFG+RRKTL  S
Sbjct: 181 DTEIVAKAPRHMFIPQPKVDSTVIGLHIREERKYKADNEQLFFKTVKAAFGQRRKTLLNS 240

Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L  +G       + +L +AGI+   R E LSIE+F  ++NI+  N
Sbjct: 241 LSSMGVLDKAKIKEVLAEAGIDEKRRGETLSIEEFAHLSNIINKN 285


>gi|323964849|gb|EGB60316.1| dimethyladenosine transferase [Escherichia coli M863]
 gi|327255031|gb|EGE66634.1| dimethyladenosine transferase [Escherichia coli STEC_7v]
          Length = 273

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F E    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELATKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|330891196|gb|EGH23857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 268

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL       PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R+ + L++
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263


>gi|315611880|ref|ZP_07886799.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296]
 gi|315316058|gb|EFU64091.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296]
          Length = 290

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 149/281 (53%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPELPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+E+F  +++ L
Sbjct: 245 FGKTEEVKEKLTKALDQAGLSPSVRGEALSLEEFASLSDAL 285


>gi|322373748|ref|ZP_08048284.1| dimethyladenosine transferase [Streptococcus sp. C150]
 gi|321278790|gb|EFX55859.1| dimethyladenosine transferase [Streptococcus sp. C150]
          Length = 290

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 152/283 (53%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D++  PIL+D    H N +++I +D LK D +    +F N + PI+++ANLP
Sbjct: 69  AEVMAFEIDERLVPILEDTLRDHDN-IKVINEDVLKADLQTRVKEFKNPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFVVPHTVFVPAPNVDSAILKMTRREQPLVEVKDEDFFFRVSKISFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI DF R+++ L +
Sbjct: 245 FGKSEEVKAKLEQALENANIKPSIRGEALSITDFARLSDALRE 287


>gi|188532871|ref|YP_001906668.1| dimethyladenosine transferase [Erwinia tasmaniensis Et1/99]
 gi|226732581|sp|B2VGP6|RSMA_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|188027913|emb|CAO95770.1| Dimethyladenosine transferase [Erwinia tasmaniensis Et1/99]
          Length = 273

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 147/283 (51%), Gaps = 26/283 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN++ H       H+    +K  GQNFL D  I+  I  +     G  V+EIG G G LT
Sbjct: 1   MNSRVHQ-----GHFA---RKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R   + V+E D+     L+     HP    +L I Q DA+  DF        
Sbjct: 53  E---PVGERLDNMTVVELDRDLAARLQT----HPFLGPKLTIFQQDAMTFDFAALAQEKG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   S  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P+PKV S V+  +P+  P      + +L +IT EAFGKRR
Sbjct: 163 MAQYYCQVIPVLEVPPESFTPAPKVDSAVVRLMPYAQPPHPVNDIRALSRITTEAFGKRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTLR SL  L   ++L +  I+  LRAEN+++  +C++ N LT
Sbjct: 223 KTLRNSLGHLFTVDVLAEMNIDPTLRAENITVAQYCQLANWLT 265


>gi|302877393|ref|YP_003845957.1| dimethyladenosine transferase [Gallionella capsiferriformans ES-2]
 gi|302580182|gb|ADL54193.1| dimethyladenosine transferase [Gallionella capsiferriformans ES-2]
          Length = 262

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/267 (36%), Positives = 141/267 (52%), Gaps = 25/267 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80
           KK  GQNFL+D NI+  I  +        ++EIG G G LT+ LL +L    V+ I++D 
Sbjct: 7   KKKFGQNFLVDQNIIADIISAIRPEADDNLVEIGPGLGALTRPLLKSLAHLHVVEIDRD- 65

Query: 81  QFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
               I+  + + +P    ++ I   DALK D     ++ +P+RI+ NLPYNI + LLF +
Sbjct: 66  ----IIARLEADYPQPHTKMTIHAGDALKFDLA---SLGAPLRIVGNLPYNISSPLLFYF 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                +      +  + Q EV ER+ A  ++P YGRLSV+  +R     + D+ P  F P
Sbjct: 119 AE---YADRITDMHFMLQNEVVERMVADHSTPAYGRLSVMLQYRFFMEKLLDVPPDSFRP 175

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLK------KITQEAFGKRRKTLRQSLKRLGGENLLH 251
           +PKV S ++  I    PIP     +K      +I   AFG+RRKTLR +LK    E    
Sbjct: 176 APKVNSAIVRMI----PIPADQIVVKNEKLFGEIVGTAFGQRRKTLRNTLKSFLNEAEFE 231

Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278
             GI   LRAENLS+++F RI   + D
Sbjct: 232 NLGINPQLRAENLSVDEFARIAAYVDD 258


>gi|27469208|ref|NP_765845.1| dimethyladenosine transferase [Staphylococcus epidermidis ATCC
           12228]
 gi|57866030|ref|YP_187727.1| dimethyladenosine transferase [Staphylococcus epidermidis RP62A]
 gi|251809801|ref|ZP_04824274.1| dimethyladenosine transferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875423|ref|ZP_06284295.1| dimethyladenosine transferase [Staphylococcus epidermidis SK135]
 gi|293366135|ref|ZP_06612822.1| dimethyladenosine transferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|33516932|sp|Q8CQU5|RSMA_STAES RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900459|sp|Q5HRR2|RSMA_STAEQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|27316757|gb|AAO05932.1|AE016751_227 dimethyladenosine transferase [Staphylococcus epidermidis ATCC
           12228]
 gi|57636688|gb|AAW53476.1| dimethyladenosine transferase [Staphylococcus epidermidis RP62A]
 gi|251806669|gb|EES59326.1| dimethyladenosine transferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295780|gb|EFA88302.1| dimethyladenosine transferase [Staphylococcus epidermidis SK135]
 gi|291319729|gb|EFE60088.1| dimethyladenosine transferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733035|gb|EGG69374.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU028]
 gi|329737895|gb|EGG74123.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU045]
          Length = 296

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/278 (36%), Positives = 150/278 (53%), Gaps = 22/278 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69
           + +L  Y    KK +GQNFL+D+NI+ KI E+S  +D  T VIE+G G G+LT+ L    
Sbjct: 13  RALLDQYGFNFKKSLGQNFLIDVNIINKIIEAS-HIDCTTGVIEVGPGMGSLTEQLAK-N 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANL 125
           A+KV+  E DQ+  P+LKD  S + N + II +D LK D  K  +        I ++ANL
Sbjct: 71  AKKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKADIAKAVDTHLQDCDKIMVVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L N +  D   P  +   ++ QKEVGER+ AQ  +  YG LS++  + T+ +
Sbjct: 130 PYYITTPILLNLMQQDV--PI-DGFVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYTETS 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLR---QS 240
            +  +   VF P P V S V+  +    P+      E   K+ + AF +RRKT+    Q+
Sbjct: 187 KVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEGFFKLAKAAFAQRRKTINNNYQN 246

Query: 241 LKRLGGENL------LHQAGIETNLRAENLSIEDFCRI 272
             + G +N       L  AGI+   R E L+I+DF  +
Sbjct: 247 FFKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATL 284


>gi|225857560|ref|YP_002739071.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031]
 gi|254807890|sp|C1CMT3|RSMA_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225725962|gb|ACO21814.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031]
 gi|301794926|emb|CBW37388.1| dimethyladenosine transferase [Streptococcus pneumoniae INV104]
 gi|332199997|gb|EGJ14071.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47901]
          Length = 290

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 150/283 (53%), Gaps = 24/283 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK----KITQEAFGKRRKTLRQSLK 242
            F +   VF P+P V S ++  +    P+P      +    K+++ +F  RRKTL  +L 
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRR--PVPAVAVEDENFFFKVSKASFTHRRKTLWNNLT 242

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
              G+           L QAG+  ++R E LS+E+F  + + L
Sbjct: 243 GYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLADAL 285


>gi|330963845|gb|EGH64105.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 268

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 141/259 (54%), Gaps = 7/259 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ V+E D+ 
Sbjct: 10  RKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLDVVELDKD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+F+ +   
Sbjct: 69  LIPILNSQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F P PKV
Sbjct: 128 S---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKV 184

Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  +G++ +L
Sbjct: 185 DSAIVRLVPYETLPHPAKDHRVLEQVVREAFNQRRKTLRNTLKLLLSSDEITASGVDGSL 244

Query: 260 RAENLSIEDFCRITNILTD 278
           R E L +  F R+ + L++
Sbjct: 245 RPEQLDLAAFVRLADTLSE 263


>gi|322375823|ref|ZP_08050334.1| dimethyladenosine transferase [Streptococcus sp. C300]
 gi|321279091|gb|EFX56133.1| dimethyladenosine transferase [Streptococcus sp. C300]
          Length = 290

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDEQFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+E+F  + + L
Sbjct: 245 FGKTDEVKEKLTKALDQAGLSPSVRGEALSLEEFASLADAL 285


>gi|209917243|ref|YP_002291327.1| dimethyladenosine transferase [Escherichia coli SE11]
 gi|226732579|sp|B6HZ32|RSMA_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|209910502|dbj|BAG75576.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli SE11]
          Length = 273

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|24111497|ref|NP_706007.1| dimethyladenosine transferase [Shigella flexneri 2a str. 301]
 gi|30061618|ref|NP_835789.1| dimethyladenosine transferase [Shigella flexneri 2a str. 2457T]
 gi|62900584|sp|Q83MG8|RSMA_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|24050250|gb|AAN41714.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase
           [Shigella flexneri 2a str. 301]
 gi|30039860|gb|AAP15594.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase
           [Shigella flexneri 2a str. 2457T]
 gi|281599412|gb|ADA72396.1| Dimethyladenosine transferase [Shigella flexneri 2002017]
 gi|313646570|gb|EFS11031.1| dimethyladenosine transferase [Shigella flexneri 2a str. 2457T]
 gi|332762369|gb|EGJ92636.1| dimethyladenosine transferase [Shigella flexneri 2747-71]
 gi|332764894|gb|EGJ95122.1| dimethyladenosine transferase [Shigella flexneri K-671]
 gi|332768840|gb|EGJ99019.1| dimethyladenosine transferase [Shigella flexneri 2930-71]
 gi|333022380|gb|EGK41618.1| dimethyladenosine transferase [Shigella flexneri K-304]
          Length = 273

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|254491379|ref|ZP_05104558.1| dimethyladenosine transferase [Methylophaga thiooxidans DMS010]
 gi|224462857|gb|EEF79127.1| dimethyladenosine transferase [Methylophaga thiooxydans DMS010]
          Length = 266

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I++ I E+     G  ++EIG G G LT+ LL+     + VIE D+ 
Sbjct: 10  RKRFGQNFLHDEGIIEAIVEAISPAKGQHLVEIGPGRGALTKPLLSR-CDWLDVIELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P+L+     +  +L I + DAL+ D+        P+R+I NLPYNI T LLF+ +   
Sbjct: 69  LIPLLR--KQLNDEQLNIHEADALRFDYRSLQKDGEPLRVIGNLPYNITTPLLFHLLGQG 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 E +  + Q+EV ERI AQ  +  YGRLS++   + +A ++F + P  F P+PKV
Sbjct: 127 DC---IEDMCFMLQREVVERICAQPGNKQYGRLSIMMQHQCQAELLFTVPPEAFEPAPKV 183

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S +I+  P    +     L+ + K+   AF +RRKT+  +LK +    +  Q GI+   
Sbjct: 184 ESAIIYLQPLKQRVGGEVDLDVMGKLVTTAFSQRRKTIANTLKNMITTEVFEQVGIDPTQ 243

Query: 260 RAENLSIEDFCRITNILTDNQ 280
           R E +S+E F  +T      Q
Sbjct: 244 RPETVSVESFVALTRAYIQKQ 264


>gi|304391144|ref|ZP_07373096.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326027|gb|EFL93273.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 309

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/297 (35%), Positives = 149/297 (50%), Gaps = 34/297 (11%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  +  + +  ++ P K  GQNF+ D   +++IA ++G   G TV+EIG G G+LT  LL
Sbjct: 6   ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV----DFEKFFNISSPI 119
            LG R VI IE DQ+    L    +QH      L ++  DAL++    D E     ++P 
Sbjct: 66  ELGCR-VIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLELPAGWTAPH 124

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R++ANLPYN+ T LL +++      P  ES  ++ Q EV +R  A      YG  SV   
Sbjct: 125 RLVANLPYNVATPLLLHFLEV---LPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIP-----------HLNPIPCCLESLKKITQE 228
           W  +A   F +  +VF+P P V STV+ F              L+      E+++ + QE
Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKLSAEGLTDEAIETLRQE 241

Query: 229 -------AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
                  AF +RRKTLRQSL    G      NLL   GI   LRAE LS+ DF +I 
Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAVGITPGLRAERLSVIDFTKIA 298


>gi|16128045|ref|NP_414593.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|74310670|ref|YP_309089.1| dimethyladenosine transferase [Shigella sonnei Ss046]
 gi|82542657|ref|YP_406604.1| dimethyladenosine transferase [Shigella boydii Sb227]
 gi|89106935|ref|AP_000715.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli str. K-12 substr. W3110]
 gi|110804117|ref|YP_687637.1| dimethyladenosine transferase [Shigella flexneri 5 str. 8401]
 gi|157159522|ref|YP_001456840.1| dimethyladenosine transferase [Escherichia coli HS]
 gi|170021591|ref|YP_001726545.1| dimethyladenosine transferase [Escherichia coli ATCC 8739]
 gi|170079714|ref|YP_001729034.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170683255|ref|YP_001742172.1| dimethyladenosine transferase [Escherichia coli SMS-3-5]
 gi|188492783|ref|ZP_03000053.1| dimethyladenosine transferase [Escherichia coli 53638]
 gi|193066225|ref|ZP_03047278.1| dimethyladenosine transferase [Escherichia coli E22]
 gi|193070981|ref|ZP_03051910.1| dimethyladenosine transferase [Escherichia coli E110019]
 gi|194429859|ref|ZP_03062371.1| dimethyladenosine transferase [Escherichia coli B171]
 gi|194434556|ref|ZP_03066814.1| dimethyladenosine transferase [Shigella dysenteriae 1012]
 gi|194439700|ref|ZP_03071770.1| dimethyladenosine transferase [Escherichia coli 101-1]
 gi|218552636|ref|YP_002385549.1| dimethyladenosine transferase [Escherichia coli IAI1]
 gi|218698473|ref|YP_002406102.1| dimethyladenosine transferase [Escherichia coli IAI39]
 gi|238899456|ref|YP_002925252.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli BW2952]
 gi|253774917|ref|YP_003037748.1| dimethyladenosine transferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037468|ref|ZP_04871545.1| methyltransferase [Escherichia sp. 1_1_43]
 gi|254160176|ref|YP_003043284.1| dimethyladenosine transferase [Escherichia coli B str. REL606]
 gi|256020109|ref|ZP_05433974.1| dimethyladenosine transferase [Shigella sp. D9]
 gi|256025368|ref|ZP_05439233.1| dimethyladenosine transferase [Escherichia sp. 4_1_40B]
 gi|260842288|ref|YP_003220066.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|260853265|ref|YP_003227156.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|260866205|ref|YP_003232607.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|293408146|ref|ZP_06651986.1| dimethyladenosine transferase [Escherichia coli B354]
 gi|293417929|ref|ZP_06660551.1| dimethyladenosine transferase [Escherichia coli B185]
 gi|293476715|ref|ZP_06665123.1| dimethyladenosine transferase [Escherichia coli B088]
 gi|300816088|ref|ZP_07096311.1| dimethyladenosine transferase [Escherichia coli MS 107-1]
 gi|300821944|ref|ZP_07102088.1| dimethyladenosine transferase [Escherichia coli MS 119-7]
 gi|300905455|ref|ZP_07123221.1| dimethyladenosine transferase [Escherichia coli MS 84-1]
 gi|300928650|ref|ZP_07144169.1| dimethyladenosine transferase [Escherichia coli MS 187-1]
 gi|300939468|ref|ZP_07154130.1| dimethyladenosine transferase [Escherichia coli MS 21-1]
 gi|300948655|ref|ZP_07162739.1| dimethyladenosine transferase [Escherichia coli MS 116-1]
 gi|300956981|ref|ZP_07169233.1| dimethyladenosine transferase [Escherichia coli MS 175-1]
 gi|301305057|ref|ZP_07211158.1| dimethyladenosine transferase [Escherichia coli MS 124-1]
 gi|301648382|ref|ZP_07248118.1| dimethyladenosine transferase [Escherichia coli MS 146-1]
 gi|307136654|ref|ZP_07496010.1| dimethyladenosine transferase [Escherichia coli H736]
 gi|307311495|ref|ZP_07591137.1| dimethyladenosine transferase [Escherichia coli W]
 gi|309796040|ref|ZP_07690452.1| dimethyladenosine transferase [Escherichia coli MS 145-7]
 gi|331640503|ref|ZP_08341651.1| dimethyladenosine transferase [Escherichia coli H736]
 gi|331661422|ref|ZP_08362346.1| dimethyladenosine transferase [Escherichia coli TA143]
 gi|331666288|ref|ZP_08367169.1| dimethyladenosine transferase [Escherichia coli TA271]
 gi|331671571|ref|ZP_08372369.1| dimethyladenosine transferase [Escherichia coli TA280]
 gi|331680624|ref|ZP_08381283.1| dimethyladenosine transferase [Escherichia coli H591]
 gi|332281262|ref|ZP_08393675.1| dimethyladenosine transferase [Shigella sp. D9]
 gi|125699|sp|P06992|RSMA_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=High level kasugamycin
           resistance protein ksgA; AltName: Full=Kasugamycin
           dimethyltransferase; AltName:
           Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase
 gi|119365842|sp|Q326I2|RSMA_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365844|sp|Q3Z5V8|RSMA_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|123147300|sp|Q0T8E4|RSMA_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166987693|sp|A7ZW03|RSMA_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028807|sp|B1IRC5|RSMA_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732575|sp|B7NHF7|RSMA_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732576|sp|B7M0E8|RSMA_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732577|sp|B1XC52|RSMA_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732580|sp|B1LFY7|RSMA_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|259494249|sp|C4ZPX7|RSMA_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|40917|emb|CAA28417.1| unnamed protein product [Escherichia coli]
 gi|146571|gb|AAA24049.1| methyltransferase (ksgA) [Escherichia coli]
 gi|1786236|gb|AAC73162.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|73854147|gb|AAZ86854.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Shigella sonnei Ss046]
 gi|81244068|gb|ABB64776.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Shigella boydii Sb227]
 gi|85674303|dbj|BAE76038.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli str. K12 substr. W3110]
 gi|110613665|gb|ABF02332.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Shigella flexneri 5 str. 8401]
 gi|157065202|gb|ABV04457.1| dimethyladenosine transferase [Escherichia coli HS]
 gi|169756519|gb|ACA79218.1| dimethyladenosine transferase [Escherichia coli ATCC 8739]
 gi|169887549|gb|ACB01256.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170520973|gb|ACB19151.1| dimethyladenosine transferase [Escherichia coli SMS-3-5]
 gi|188487982|gb|EDU63085.1| dimethyladenosine transferase [Escherichia coli 53638]
 gi|192926150|gb|EDV80791.1| dimethyladenosine transferase [Escherichia coli E22]
 gi|192955711|gb|EDV86185.1| dimethyladenosine transferase [Escherichia coli E110019]
 gi|194412078|gb|EDX28388.1| dimethyladenosine transferase [Escherichia coli B171]
 gi|194417209|gb|EDX33320.1| dimethyladenosine transferase [Shigella dysenteriae 1012]
 gi|194421385|gb|EDX37402.1| dimethyladenosine transferase [Escherichia coli 101-1]
 gi|218359404|emb|CAQ96943.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli IAI1]
 gi|218368459|emb|CAR16195.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli IAI39]
 gi|226840574|gb|EEH72576.1| methyltransferase [Escherichia sp. 1_1_43]
 gi|238863510|gb|ACR65508.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli BW2952]
 gi|242375890|emb|CAQ30571.1| 16S rRNA m[6][2]A1518,m[6][2]A1519 dimethyltransferase [Escherichia
           coli BL21(DE3)]
 gi|253325961|gb|ACT30563.1| dimethyladenosine transferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972077|gb|ACT37748.1| dimethyladenosine transferase [Escherichia coli B str. REL606]
 gi|253976286|gb|ACT41956.1| dimethyladenosine transferase [Escherichia coli BL21(DE3)]
 gi|257751914|dbj|BAI23416.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|257757435|dbj|BAI28932.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|257762561|dbj|BAI34056.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|260450740|gb|ACX41162.1| dimethyladenosine transferase [Escherichia coli DH1]
 gi|284919834|emb|CBG32889.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl (rRNA)
           dimethyltransferase) [Escherichia coli 042]
 gi|291321168|gb|EFE60610.1| dimethyladenosine transferase [Escherichia coli B088]
 gi|291430647|gb|EFF03645.1| dimethyladenosine transferase [Escherichia coli B185]
 gi|291472397|gb|EFF14879.1| dimethyladenosine transferase [Escherichia coli B354]
 gi|300316271|gb|EFJ66055.1| dimethyladenosine transferase [Escherichia coli MS 175-1]
 gi|300402671|gb|EFJ86209.1| dimethyladenosine transferase [Escherichia coli MS 84-1]
 gi|300451881|gb|EFK15501.1| dimethyladenosine transferase [Escherichia coli MS 116-1]
 gi|300455689|gb|EFK19182.1| dimethyladenosine transferase [Escherichia coli MS 21-1]
 gi|300463319|gb|EFK26812.1| dimethyladenosine transferase [Escherichia coli MS 187-1]
 gi|300525544|gb|EFK46613.1| dimethyladenosine transferase [Escherichia coli MS 119-7]
 gi|300531295|gb|EFK52357.1| dimethyladenosine transferase [Escherichia coli MS 107-1]
 gi|300839664|gb|EFK67424.1| dimethyladenosine transferase [Escherichia coli MS 124-1]
 gi|301073517|gb|EFK88323.1| dimethyladenosine transferase [Escherichia coli MS 146-1]
 gi|306908474|gb|EFN38972.1| dimethyladenosine transferase [Escherichia coli W]
 gi|308120282|gb|EFO57544.1| dimethyladenosine transferase [Escherichia coli MS 145-7]
 gi|309700264|emb|CBI99552.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl (rRNA)
           dimethyltransferase) [Escherichia coli ETEC H10407]
 gi|315059277|gb|ADT73604.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli W]
 gi|315134747|dbj|BAJ41906.1| dimethyladenosine transferase [Escherichia coli DH1]
 gi|315255673|gb|EFU35641.1| dimethyladenosine transferase [Escherichia coli MS 85-1]
 gi|315616172|gb|EFU96791.1| dimethyladenosine transferase [Escherichia coli 3431]
 gi|320172861|gb|EFW48093.1| Dimethyladenosine transferase [Shigella dysenteriae CDC 74-1112]
 gi|320182964|gb|EFW57832.1| Dimethyladenosine transferase [Shigella flexneri CDC 796-83]
 gi|320200429|gb|EFW75015.1| Dimethyladenosine transferase [Escherichia coli EC4100B]
 gi|323157886|gb|EFZ43989.1| dimethyladenosine transferase [Escherichia coli EPECa14]
 gi|323160077|gb|EFZ46039.1| dimethyladenosine transferase [Escherichia coli E128010]
 gi|323166103|gb|EFZ51882.1| dimethyladenosine transferase [Shigella sonnei 53G]
 gi|323171211|gb|EFZ56859.1| dimethyladenosine transferase [Escherichia coli LT-68]
 gi|323176360|gb|EFZ61952.1| dimethyladenosine transferase [Escherichia coli 1180]
 gi|323380166|gb|ADX52434.1| dimethyladenosine transferase [Escherichia coli KO11]
 gi|323935104|gb|EGB31471.1| dimethyladenosine transferase [Escherichia coli E1520]
 gi|323939727|gb|EGB35929.1| dimethyladenosine transferase [Escherichia coli E482]
 gi|323960000|gb|EGB55646.1| dimethyladenosine transferase [Escherichia coli H489]
 gi|323970725|gb|EGB65979.1| dimethyladenosine transferase [Escherichia coli TA007]
 gi|323975781|gb|EGB70877.1| dimethyladenosine transferase [Escherichia coli TW10509]
 gi|324017680|gb|EGB86899.1| dimethyladenosine transferase [Escherichia coli MS 117-3]
 gi|324118403|gb|EGC12297.1| dimethyladenosine transferase [Escherichia coli E1167]
 gi|331040249|gb|EGI12456.1| dimethyladenosine transferase [Escherichia coli H736]
 gi|331061337|gb|EGI33300.1| dimethyladenosine transferase [Escherichia coli TA143]
 gi|331066499|gb|EGI38376.1| dimethyladenosine transferase [Escherichia coli TA271]
 gi|331071416|gb|EGI42773.1| dimethyladenosine transferase [Escherichia coli TA280]
 gi|331072087|gb|EGI43423.1| dimethyladenosine transferase [Escherichia coli H591]
 gi|332095340|gb|EGJ00363.1| dimethyladenosine transferase [Shigella boydii 5216-82]
 gi|332097801|gb|EGJ02774.1| dimethyladenosine transferase [Shigella dysenteriae 155-74]
 gi|332098860|gb|EGJ03811.1| dimethyladenosine transferase [Shigella boydii 3594-74]
 gi|332103614|gb|EGJ06960.1| dimethyladenosine transferase [Shigella sp. D9]
 gi|332341383|gb|AEE54717.1| dimethyladenosine transferase KsgA [Escherichia coli UMNK88]
 gi|332762612|gb|EGJ92877.1| dimethyladenosine transferase [Shigella flexneri 4343-70]
 gi|333009061|gb|EGK28517.1| dimethyladenosine transferase [Shigella flexneri K-218]
 gi|224747|prf||1112172A methyltransferase
          Length = 273

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|229546781|ref|ZP_04435506.1| dimethyladenosine transferase [Enterococcus faecalis TX1322]
 gi|256854221|ref|ZP_05559585.1| dimethyladenosine transferase [Enterococcus faecalis T8]
 gi|307290952|ref|ZP_07570842.1| dimethyladenosine transferase [Enterococcus faecalis TX0411]
 gi|229308130|gb|EEN74117.1| dimethyladenosine transferase [Enterococcus faecalis TX1322]
 gi|256709781|gb|EEU24825.1| dimethyladenosine transferase [Enterococcus faecalis T8]
 gi|306498022|gb|EFM67549.1| dimethyladenosine transferase [Enterococcus faecalis TX0411]
 gi|315029806|gb|EFT41738.1| dimethyladenosine transferase [Enterococcus faecalis TX4000]
          Length = 295

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 152/289 (52%), Gaps = 24/289 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+  L + A
Sbjct: 14  KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++ANLP
Sbjct: 73  AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131

Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           Y I T ++ +++  S D        + ++ QKEV +RI A+  +  YG LS+   +  +A
Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242
           ++ F +   VF P P V S +I    H  P        +  K+T+ +F  RRKTL  +L 
Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRHATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
              G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 247 HFYGKDEQTVAWLKVSLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|307546072|ref|YP_003898551.1| dimethyladenosine transferase [Halomonas elongata DSM 2581]
 gi|307218096|emb|CBV43366.1| dimethyladenosine transferase [Halomonas elongata DSM 2581]
          Length = 268

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 135/259 (52%), Gaps = 8/259 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+ ++  + G   G  ++E+G G G LT+ LL      + VIE D+ 
Sbjct: 11  RKRFGQNFLRDPGIISRLVRAIGPRPGQRLVEVGPGQGALTEPLLEAADGHLEVIELDRD 70

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P L+      P    I + DALK DF +       +R++ NLPYNI T L+ + ++A 
Sbjct: 71  LIPGLRVQFFDKPG-FVIHEGDALKFDFRELRGDGPALRVVGNLPYNISTPLISHLLAAG 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                   +  + QKEV ER+ A+      GRLSVL  +  +   +F + P  F P PKV
Sbjct: 130 DA---VSDMHFMLQKEVVERLAAEPGGTERGRLSVLAQYHCRVESLFTVPPEAFVPRPKV 186

Query: 202 TSTVIHFIPHLNPIPCCL-ESLK-KITQEAFGKRRKTLRQSLK-RLGGENLLHQAGIETN 258
            S ++   PH  P    L ESL  ++ +EAF +RRKTLR +LK RL GE  L    I+  
Sbjct: 187 ESAIVRLTPHETPPHRALDESLMFEVVREAFAQRRKTLRNNLKSRLSGEA-LSALDIDPG 245

Query: 259 LRAENLSIEDFCRITNILT 277
            R + LS+ +F RI + L 
Sbjct: 246 RRPQTLSVAEFVRIADHLA 264


>gi|255994696|ref|ZP_05427831.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989]
 gi|255993409|gb|EEU03498.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989]
          Length = 285

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 157/278 (56%), Gaps = 15/278 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++K +   + I P K  GQNFL+D NI++KI +S+G      V+EIG G G LT+  ++ 
Sbjct: 12  TIKQLCDCFDIRPNKRYGQNFLIDYNIVQKITDSAGLTSSDRVLEIGPGIGTLTRE-ISK 70

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A  V+V+E D++  P+L D +  H + ++I+  D  K +    F     +++I NLPY 
Sbjct: 71  KAGSVVVVEVDKKLIPVL-DSTLSHCSNIKIVNQDIFKYNVGDDF--LDTVKVIGNLPYY 127

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++  W+  +   P    + ++ QKEV +R  A++ S     +++   + ++   +F
Sbjct: 128 ITTPIVM-WLLEEV--PQATEIVIMMQKEVAKRFAAKQGSRDSSAVTLAVQYYSEIEELF 184

Query: 189 DISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG 246
           D+S H F+P+PKV STV+    H  NP+    E L  +  +++F KRRKTL  SL  + G
Sbjct: 185 DVSKHCFYPAPKVDSTVVRLKRHTENPVAVKSEKLLFECIKKSFEKRRKTLINSLFGING 244

Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                   +L++AGI+  LRAENL+++ +  I N++ D
Sbjct: 245 LEKERLVKILNEAGIDPRLRAENLTLQQYAGIANLIYD 282


>gi|289167168|ref|YP_003445435.1| dimethyladenosine transferase [Streptococcus mitis B6]
 gi|288906733|emb|CBJ21567.1| dimethyladenosine transferase [Streptococcus mitis B6]
          Length = 290

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+E+F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLADAL 285


>gi|15799736|ref|NP_285748.1| dimethyladenosine transferase [Escherichia coli O157:H7 EDL933]
 gi|15829310|ref|NP_308083.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. Sakai]
 gi|168751689|ref|ZP_02776711.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756882|ref|ZP_02781889.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762818|ref|ZP_02787825.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766746|ref|ZP_02791753.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776974|ref|ZP_02801981.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781755|ref|ZP_02806762.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785109|ref|ZP_02810116.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC869]
 gi|168801939|ref|ZP_02826946.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC508]
 gi|195937727|ref|ZP_03083109.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807925|ref|ZP_03250262.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813755|ref|ZP_03255084.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819017|ref|ZP_03259337.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397383|ref|YP_002268661.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|217326445|ref|ZP_03442529.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791190|ref|YP_003076027.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226811|ref|ZP_05941092.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255214|ref|ZP_05947747.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291280877|ref|YP_003497695.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N,
           N-adenosyl(rRNA) dimethyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|27151579|sp|Q8XA14|RSMA_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732574|sp|B5YZ89|RSMA_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|12512746|gb|AAG54356.1|AE005182_5 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O157:H7 str. EDL933]
 gi|13359512|dbj|BAB33479.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. Sakai]
 gi|187767719|gb|EDU31563.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014303|gb|EDU52425.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000721|gb|EDU69707.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356082|gb|EDU74501.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364097|gb|EDU82516.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366989|gb|EDU85405.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374734|gb|EDU93150.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC869]
 gi|189375991|gb|EDU94407.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC508]
 gi|208727726|gb|EDZ77327.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735032|gb|EDZ83719.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739140|gb|EDZ86822.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158783|gb|ACI36216.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746894|gb|ACI71754.1| dimethyladenosine transferase [Escherichia coli]
 gi|209746896|gb|ACI71755.1| dimethyladenosine transferase [Escherichia coli]
 gi|209746898|gb|ACI71756.1| dimethyladenosine transferase [Escherichia coli]
 gi|209746900|gb|ACI71757.1| dimethyladenosine transferase [Escherichia coli]
 gi|209746902|gb|ACI71758.1| dimethyladenosine transferase [Escherichia coli]
 gi|217322666|gb|EEC31090.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590590|gb|ACT69951.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290760750|gb|ADD54711.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N,
           N-adenosyl(rRNA) dimethyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190426|gb|EFW65076.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320642093|gb|EFX11444.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O157:H7 str. G5101]
 gi|320647456|gb|EFX16251.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O157:H- str. 493-89]
 gi|320652790|gb|EFX21028.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O157:H- str. H 2687]
 gi|320658179|gb|EFX25908.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663488|gb|EFX30772.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668800|gb|EFX35595.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345229|gb|EGD68972.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str. 1125]
 gi|326346918|gb|EGD70652.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str. 1044]
          Length = 273

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|333011435|gb|EGK30849.1| dimethyladenosine transferase [Shigella flexneri K-272]
 gi|333021674|gb|EGK40923.1| dimethyladenosine transferase [Shigella flexneri K-227]
          Length = 273

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|324112546|gb|EGC06523.1| dimethyladenosine transferase [Escherichia fergusonii B253]
          Length = 273

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F E    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELATKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSIEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|307710852|ref|ZP_07647279.1| dimethyladenosine transferase [Streptococcus mitis SK321]
 gi|307617297|gb|EFN96470.1| dimethyladenosine transferase [Streptococcus mitis SK321]
          Length = 290

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+E+F  + + L
Sbjct: 245 FGKTEEVKDKLIKALDQAGLSPSVRGEALSLEEFASLADAL 285


>gi|227888939|ref|ZP_04006744.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200]
 gi|227850527|gb|EEJ60613.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200]
          Length = 294

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 150/284 (52%), Gaps = 20/284 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPILKDISSQH------PNRLEIIQDDALKVDF----EKFFNISSPIR 120
            KV+  E DQ    IL +   Q        +R +++  D LK +F    + F ++S  + 
Sbjct: 74  -KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKSVN 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPY I T ++FN I +D     + SLTL+ QKEV ER+ A+  +  YG LS+    
Sbjct: 133 IVANLPYYITTPIIFNLIKSDLD---FSSLTLMMQKEVAERLVAKPKTKEYGPLSIAVQS 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239
           R    +  ++    F P PKV S V+   P L  P          + +  F +RRKTL  
Sbjct: 190 RMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYVFFDHVVKMCFAQRRKTLAN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +LK L       E L++  G++  +R E L++  F ++ ++L D
Sbjct: 250 NLKTLIKDKNEREKLINDLGLDVRVRPEELTLNQFVQLAHLLKD 293


>gi|148284255|ref|YP_001248345.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Boryong]
 gi|146739694|emb|CAM79504.1| dimethyladenosine transferase (rRNA methylation) [Orientia
           tsutsugamushi str. Boryong]
          Length = 273

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/274 (36%), Positives = 149/274 (54%), Gaps = 12/274 (4%)

Query: 10  LKTILSH---YKIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQML 65
           L T+  H   +KI   K +GQ+FLLD NI  KI   +  S+ G  V+E+G GPG LT+ +
Sbjct: 4   LPTVSQHMKLHKITANKSLGQHFLLDSNICNKIVSVAPNSITGKVVLEVGPGPGGLTRAI 63

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L    +K+IVIEKD  F  +L +I +   ++LE+I  DAL  D       S+ I II+NL
Sbjct: 64  LAHNPKKLIVIEKDASFIELLHEIPTMPSSKLEVICGDALNFDLSNIE--SNRIIIISNL 121

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYNIGT+L+  W+   +   F E + ++ Q EV ERI +   S  YGR++VL    +   
Sbjct: 122 PYNIGTQLIVQWLHQIS---FVEYMIIMLQDEVVERIISNHCSKTYGRITVLAQIVSDVR 178

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRL 244
             F +    F P PKV S+V+   P  + +    +E+++KIT+ AF  RRK L+  L  L
Sbjct: 179 KCFKVPSRAFNPPPKVDSSVMLVSPKKHQLDRHTIENVQKITKLAFSTRRKKLKNCLSHL 238

Query: 245 GGENLLHQAGIETNL--RAENLSIEDFCRITNIL 276
                +    +   L  R E L+ E + +++ IL
Sbjct: 239 LTSINIPDEILNAQLHQRPEQLTPEQYVQLSRIL 272


>gi|114319429|ref|YP_741112.1| dimethyladenosine transferase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225823|gb|ABI55622.1| dimethyladenosine transferase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 274

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/267 (34%), Positives = 141/267 (52%), Gaps = 10/267 (3%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           +H +  P+K  GQNFL D  ++ ++ ++     G  ++EIG G G LT  LL    R + 
Sbjct: 3   NHRRHRPRKRFGQNFLHDPTLISRMVKAIRPRPGDPLVEIGPGEGALTLPLLRAAGR-LT 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRL 133
            +E D+     L+   ++    L + Q DAL+ DF +      + +R++ NLPYNI T L
Sbjct: 62  AVELDRDLVAPLQ-ARARTAGELTVHQADALRFDFRQLAPAPPARLRVVGNLPYNISTPL 120

Query: 134 LFNWI-SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           LF+ + SAD      + +    QKEV ER+ A   S  YGRLSV+  +R   T +F + P
Sbjct: 121 LFHLLESADVI----QDMHFTLQKEVVERLAAPPGSKTYGRLSVMVQYRCAVTNLFRLPP 176

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             F P PKV S  +  +PH  P       ++  ++  +AF +RRKTLR +L+ L   + +
Sbjct: 177 GAFRPPPKVDSAFVRLVPHAEPTVDVGDEQAFARLVTQAFSQRRKTLRNTLRPLMSADTI 236

Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277
              GI+   RAENLS+E F  ++   T
Sbjct: 237 IGVGIDPRERAENLSLEQFAALSQAHT 263


>gi|86516031|gb|ABC97666.1| KsgA [Shigella boydii]
          Length = 256

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 138/262 (52%), Gaps = 18/262 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83
           GQNFL D  ++  I  +     G  ++EIG G   LT+    +G R  ++ VIE D+   
Sbjct: 3   GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59

Query: 84  PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139
             L+     HP    +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S
Sbjct: 60  ARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P P
Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172

Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L + GI+ 
Sbjct: 173 KVDSAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSAEVLTEMGIDP 232

Query: 258 NLRAENLSIEDFCRITNILTDN 279
            +RAEN+S+  +C++ N L +N
Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254


>gi|300919604|ref|ZP_07136096.1| dimethyladenosine transferase [Escherichia coli MS 115-1]
 gi|300413350|gb|EFJ96660.1| dimethyladenosine transferase [Escherichia coli MS 115-1]
          Length = 273

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQRGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|191169146|ref|ZP_03030905.1| dimethyladenosine transferase [Escherichia coli B7A]
 gi|190900821|gb|EDV60611.1| dimethyladenosine transferase [Escherichia coli B7A]
          Length = 273

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAAHLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|289627688|ref|ZP_06460642.1| dimethyladenosine transferase [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330868491|gb|EGH03200.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 268

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL       PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHWRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R+ + L++
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263


>gi|149377956|ref|ZP_01895682.1| dimethyladenosine transferase [Marinobacter algicola DG893]
 gi|149357730|gb|EDM46226.1| dimethyladenosine transferase [Marinobacter algicola DG893]
          Length = 276

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 143/261 (54%), Gaps = 8/261 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++++I  +        ++EIG G G LT+ +L + +  + V+E D+ 
Sbjct: 10  RKRFGQNFLHDPGVIERIIRAIHPRPDDALVEIGPGLGALTEEMLAVNS-NLQVVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P+L+     +PN   I + DALK DF +      P+RII NLPYNI T L+F+ +   
Sbjct: 69  LIPVLRTKFFNYPN-FRIHEADALKFDFGELV-ADKPLRIIGNLPYNISTPLIFHLLGHS 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +R+ A     +YGRL ++T +  +   +F++ P  F P+PKV
Sbjct: 127 G---VVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCRVQPLFEVGPGAFRPAPKV 183

Query: 202 TSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++  +PH   P P    + L+ + + AF  RRKTLR++L  +     L+  GI   L
Sbjct: 184 DSAIVRLVPHKTLPHPAKNYKLLQAVVRTAFSARRKTLRKALAGMVSVEQLNSIGINDGL 243

Query: 260 RAENLSIEDFCRITNILTDNQ 280
           R ENL + ++  I ++L D++
Sbjct: 244 RPENLGLAEYVAIADLLADSR 264


>gi|152995082|ref|YP_001339917.1| dimethyladenosine transferase [Marinomonas sp. MWYL1]
 gi|189028811|sp|A6VU53|RSMA_MARMS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|150836006|gb|ABR69982.1| dimethyladenosine transferase [Marinomonas sp. MWYL1]
          Length = 266

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++++I    G   G  ++EIG G G LT+ ++++  R + V+E D+ 
Sbjct: 10  RKRFGQNFLHDHGVIRRIVACIGPKKGQRIVEIGPGKGALTEGIISVTER-MDVVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PILK    + P  L + + DA+K DF         IR++ NLPYNI T L+F+ +S  
Sbjct: 69  LIPILKVNLFRFPE-LTVHEADAMKFDFTSLTTPEQAIRVVGNLPYNISTPLIFHLLSQA 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 E +  + QKEV +R+ A+     YGRLSV+  +      +F + P  F P+PKV
Sbjct: 128 QA---IEDMHFMLQKEVVDRLAARPGDSLYGRLSVMAQYYCAVESLFIVGPESFDPAPKV 184

Query: 202 TSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++   PH + P P   ++ L+ + +  F +RRKTLR + K +   +      I+  L
Sbjct: 185 DSAIVRMTPHKILPHPVNNIKMLEDMVRIGFQQRRKTLRNNYKGVLDNDDFSALNIDPTL 244

Query: 260 RAENLSIEDFCRITN 274
           R E L +EDF RI N
Sbjct: 245 RPERLDVEDFVRIAN 259


>gi|332653433|ref|ZP_08419178.1| dimethyladenosine transferase [Ruminococcaceae bacterium D16]
 gi|332518579|gb|EGJ48182.1| dimethyladenosine transferase [Ruminococcaceae bacterium D16]
          Length = 289

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/285 (38%), Positives = 156/285 (54%), Gaps = 26/285 (9%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           + +K +LS +     K MGQNFL++  + + IA++SG+  G+ V+E+G G G LT+ L +
Sbjct: 7   NDIKALLSRHGFRFSKSMGQNFLIEDWVPRDIADASGAAPGVGVVEVGPGIGPLTREL-S 65

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRII 122
           L A KV+ IE D+   PIL +  S +PN  EI   D LK D      EK   +S PI   
Sbjct: 66  LRADKVVSIELDRSLLPILAETLSDYPN-AEIFPGDVLKTDLPALVSEKLAGLS-PI-AC 122

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYNI T  +   I A  +     S+T++ Q+EV  RI A   +  YG  SV   + T
Sbjct: 123 ANLPYNITTPAITALIEAGCF----GSITVMIQREVARRICAAPGTGDYGAFSVYCQYHT 178

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQ 239
           K  ++FD+ P  F P+PKVTS+V+  +P   P    ++  K   ++ + AF +RRKTL  
Sbjct: 179 KPEILFDVPPSCFIPAPKVTSSVLRMVPQTPPAE--VDDPKHFFQVVRAAFAQRRKTLLN 236

Query: 240 SLKR-LGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           SL   LGG        N + Q G+  N+R E LSI DF  ++  L
Sbjct: 237 SLSSALGGTYQKEAIANAIAQCGLAENIRGERLSISDFAALSKAL 281


>gi|33152288|ref|NP_873641.1| dimethyladenosine transferase [Haemophilus ducreyi 35000HP]
 gi|62900573|sp|Q7VM33|RSMA_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33148511|gb|AAP96030.1| dimethyladenosine transferase [Haemophilus ducreyi 35000HP]
          Length = 289

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/288 (34%), Positives = 149/288 (51%), Gaps = 26/288 (9%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T N+K H     L H     +K  GQNFL D+N++  I  +    +   ++EIG G G L
Sbjct: 3   TSNSKKH-----LGH---TARKRFGQNFLSDMNVIHNIVAAINPRNEDFLLEIGPGLGAL 54

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF----- 113
           T+ +      K+ VIE D+     L+     HP   ++L +I+ DAL+ +F  +F     
Sbjct: 55  TEPVAE-QVEKLTVIELDRDLAERLR----HHPFLHHKLTVIEQDALRFNFRDYFDSLNL 109

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
           N    IRI  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 110 NHHQAIRIFGNLPYNISTPLMFHLFK---FHDLIQDMHFMLQKEVVKRLCAAPNSKAYGR 166

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  +P+   P P   +  L ++T  AF 
Sbjct: 167 LTIMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLMPYKTLPYPVKDVYWLNRVTTHAFN 226

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI    RAENL+I D+ R+ N L DN
Sbjct: 227 QRRKTLRNALSTLFTAQQLEMLGINLTDRAENLTISDYARLANWLCDN 274


>gi|325495979|gb|EGC93838.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia
           fergusonii ECD227]
          Length = 273

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSIEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|323140326|ref|ZP_08075258.1| dimethyladenosine transferase [Phascolarctobacterium sp. YIT 12067]
 gi|322415184|gb|EFY05971.1| dimethyladenosine transferase [Phascolarctobacterium sp. YIT 12067]
          Length = 283

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/273 (35%), Positives = 150/273 (54%), Gaps = 15/273 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  +K+   K +GQNFL+D NI+++I E++       V+E+G G G LTQ L   GA  
Sbjct: 15  ILHRFKLRADKKLGQNFLIDENIVRRIVEAAELSPADKVLEVGPGIGTLTQGLAESGA-D 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGT 131
           V+ +E D++  P+L D++ +  + + I+  D L+V+  +   +++P  ++ ANLPY I T
Sbjct: 74  VVAVELDKRLLPVL-DVTLEGYDNVRIVNGDILQVNIME--TVAAPEFKVCANLPYYITT 130

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++F  +     P   E L  + QKEV ER+ A+  S  YG LSV   + T+  + F + 
Sbjct: 131 PIIFALLE-KRLP--MERLVAMVQKEVAERMAAKPGSRDYGALSVAIQYYTEPEIAFIVP 187

Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG---- 245
           P  F P+P V S VI        P+  C E+L  +I + AF  RRK L  SLK +G    
Sbjct: 188 PTSFIPAPAVDSAVIVCKRRSEPPVKVCDEALFFRIVKAAFSLRRKMLSNSLKNMGINSE 247

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                L +AG++   RAE LS+EDF  +TN  +
Sbjct: 248 QCSQWLQRAGVDGKRRAETLSLEDFAALTNTFS 280


>gi|304315637|ref|YP_003850782.1| dimethyladenosine transferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777139|gb|ADL67698.1| dimethyladenosine transferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 272

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/269 (36%), Positives = 150/269 (55%), Gaps = 20/269 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNF+ D  IL KIA+ +       VIEIGAG G LT+ ++   A+ V+  E D +
Sbjct: 9   KKKLGQNFIFDEGILSKIADLADITKDDNVIEIGAGLGTLTREIVE-RAKNVVAYEIDDE 67

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNW 137
              IL+D   ++ N L I+ DD +K D     +K+F+     +++ANLPY I + ++   
Sbjct: 68  AVGILRDKLREYKN-LIILNDDIMKADLKGVVDKYFD-GDKCKVVANLPYYITSPIIMKL 125

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           + +       + +T+L QKEV ERI A+  S  YG L+V   + +K  M+ ++ P VF P
Sbjct: 126 LESH----LMKDITILIQKEVAERICAEPGSKEYGVLTVAVNYYSKPEMLLELPPEVFSP 181

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGE-----NL 249
            PKV+ST+I  +  L+  P  +++ K   K+ + +FG+RRK +  SLK L  +     N 
Sbjct: 182 KPKVSSTLIK-LHVLDEPPVFVKNEKLFFKVVKASFGQRRKVITNSLKSLNIDQSLILNA 240

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278
           L + GI+   R E LSIE F  + N + D
Sbjct: 241 LLKCGIDLKQRGETLSIEKFAELANAIDD 269


>gi|295401992|ref|ZP_06811954.1| dimethyladenosine transferase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294975994|gb|EFG51610.1| dimethyladenosine transferase [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 295

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 150/284 (52%), Gaps = 22/284 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  Y    KK +GQNFL+D NIL+KI + +G       IEIG G G LT+ L    A
Sbjct: 14  REILEKYGFSFKKSLGQNFLIDTNILRKIVDVAGLSRETGAIEIGPGIGALTEQL-ARRA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           +KV+  E DQ+  PIL+D  S + N + II  D LK D  +     F  +S I ++ANLP
Sbjct: 73  KKVVAFEIDQRLLPILEDTLSPYEN-VRIIHQDVLKADIHRVIAEEFTDASDIMVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   ++ D  P     + ++ QKEV +RI+AQ  +  YG LS+   + T+A  
Sbjct: 132 YYVTTPIIMKLLT-DNLP--IRGIVVMLQKEVADRISAQPGTKDYGSLSIAIQYYTEAEK 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL-- 241
           +  +   VF P P V S VI  I    P P  ++      ++ + +F +RRKT+  +L  
Sbjct: 189 IMTVPRTVFIPQPNVDSAVIRLIKRKQP-PVDVDDESFFFQVVRASFAQRRKTILNNLIS 247

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                  ++   E +L + GI+   R E L++E+F  ++N L +
Sbjct: 248 NLPNGKARKEKIERILTENGIDPRRRGETLTMEEFAALSNALRE 291


>gi|312870255|ref|ZP_07730386.1| dimethyladenosine transferase [Lactobacillus oris PB013-T2-3]
 gi|311094278|gb|EFQ52591.1| dimethyladenosine transferase [Lactobacillus oris PB013-T2-3]
          Length = 297

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 151/287 (52%), Gaps = 22/287 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y I  KK  GQNFL DLN+LK I  ++       VIEIG G G LT+ L    A
Sbjct: 14  RAIMEKYGIHTKKGFGQNFLTDLNVLKNIVSAAEITRDDNVIEIGPGIGALTEQLAQ-AA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
            +V+ +E DQ   P+L ++ + + N + ++  D L+ +      ++F + S PI+++ANL
Sbjct: 73  GEVLALEIDQDLIPVLAEVLAPYDN-VTVLNQDVLQANLPELIKQQFTDPSRPIKVVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + +L N ++A   P  W ++ ++ QKEV +R+TAQ  +  YG L++   ++  A 
Sbjct: 132 PYYITSPILMNLLAA---PVDWAAICVMMQKEVAQRLTAQPGTKQYGALTLAIEYQMTAE 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLK 242
           + F++S  VF P+P V S ++   P   P+P    + +K+    +  F  RRK+L  +L+
Sbjct: 189 IAFNVSRRVFVPAPNVDSAIVVLRPRTTPLPVQPFNKQKLFGFIRGCFAHRRKSLWNNLQ 248

Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
              G         + +L    I    R E L++E F  + N L   Q
Sbjct: 249 ATVGKQPAVKEKMQAILTTLAISPQTRPERLTLEQFIELANALHAAQ 295


>gi|325912354|ref|ZP_08174750.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D]
 gi|325475825|gb|EGC78995.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D]
          Length = 295

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 151/279 (54%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++   VIEIG G G+LT+ LL  GA
Sbjct: 14  RAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVECSQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALKVDF----EKFFNISSPIR 120
            KV+  E D     IL  ++ +Q  N     R  II  D LK DF      +F+++ PI 
Sbjct: 74  -KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQPII 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   S  YG L++    
Sbjct: 133 VVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHKSKAYGPLTIAVKK 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239
                  F++    F PSPKV S V+   P  + +    E L  +I + AF +RRKTL  
Sbjct: 190 DMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIVKLAFSQRRKTLNN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +LK L       + LL+   +++N+R E LSI  +  ++
Sbjct: 250 NLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELS 288


>gi|310765114|gb|ADP10064.1| dimethyladenosine transferase [Erwinia sp. Ejp617]
          Length = 275

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 146/283 (51%), Gaps = 26/283 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN++ H       H+    +K  GQNFL D  I+  I  +     G  V+EIG G G LT
Sbjct: 1   MNSRVHQ-----GHFA---RKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R   + V+E D+     L+     HP    +L I Q DA+  DF        
Sbjct: 53  E---PVGERLDSMTVVELDRDLAARLQT----HPFLGPKLTIFQQDAMTFDFAALAQEKG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   S  YGRL+V
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P+PKV S V+  +P+   P P   +  L +IT EAFGKRR
Sbjct: 163 MAQYYCQVIPVLEVPPESFTPAPKVDSAVVRLMPYARLPHPVDDIRVLSRITTEAFGKRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTLR SL  L   + L +  I+  LRAEN+S+  +C++ N LT
Sbjct: 223 KTLRNSLGHLFSVDALTEMNIDPTLRAENISVAQYCQLANWLT 265


>gi|229548872|ref|ZP_04437597.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200]
 gi|255971386|ref|ZP_05421972.1| dimethyladenosine transferase [Enterococcus faecalis T1]
 gi|257421180|ref|ZP_05598170.1| dimethyladenosine transferase dimethyltransferase [Enterococcus
           faecalis X98]
 gi|312952797|ref|ZP_07771659.1| dimethyladenosine transferase [Enterococcus faecalis TX0102]
 gi|229305893|gb|EEN71889.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200]
 gi|255962404|gb|EET94880.1| dimethyladenosine transferase [Enterococcus faecalis T1]
 gi|257163004|gb|EEU92964.1| dimethyladenosine transferase dimethyltransferase [Enterococcus
           faecalis X98]
 gi|310629313|gb|EFQ12596.1| dimethyladenosine transferase [Enterococcus faecalis TX0102]
 gi|315153008|gb|EFT97024.1| dimethyladenosine transferase [Enterococcus faecalis TX0031]
 gi|315155239|gb|EFT99255.1| dimethyladenosine transferase [Enterococcus faecalis TX0043]
 gi|315157566|gb|EFU01583.1| dimethyladenosine transferase [Enterococcus faecalis TX0312]
          Length = 295

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 151/289 (52%), Gaps = 24/289 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+  L + A
Sbjct: 14  KEILKKYGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++ANLP
Sbjct: 73  AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131

Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           Y I T ++ +++  S D        + ++ QKEV +RI A+  +  YG LS+   +  +A
Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242
           ++ F +   VF P P V S +I       P        +  K+T+ +F  RRKTL  +L 
Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
              G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|52424685|ref|YP_087822.1| dimethyladenosine transferase [Mannheimia succiniciproducens
           MBEL55E]
 gi|62900507|sp|Q65UX3|RSMA_MANSM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|52306737|gb|AAU37237.1| KsgA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 288

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 151/291 (51%), Gaps = 33/291 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D N+++ I  +     G  ++EIG G G LT
Sbjct: 1   MNSKRH-----LGH---TARKRFGQNFLHDDNVIQGIVAAIYPQKGQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS--- 116
           + +     R + V+E D+     L+     HP    +L +I+ DA++ DF K +      
Sbjct: 53  EPVADQTDR-LTVVELDRDLAQRLR----HHPFLHQKLNVIETDAMQFDFGKLYEDEHLA 107

Query: 117 ---SPIRIIANLPYNIGTRLLFNWISADTWPPFW---ESLTLLFQKEVGERITAQKNSPH 170
                +R+  NLPYNI T L+F+ +       F+   + +  + QKEV +R+ A  NS  
Sbjct: 108 EQGQKLRVFGNLPYNISTPLIFHLLK------FYDKIQDMHFMLQKEVVKRLCAAPNSKA 161

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQE 228
           YGRL+++T +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++T +
Sbjct: 162 YGRLTIMTQYFCQVMPVLEVPPTAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVTSQ 221

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           AF +RRKTLR +L  L     L    I+   RAENLSI D+ R+ N L DN
Sbjct: 222 AFNQRRKTLRNALSTLFTPEQLTALNIDLTARAENLSIADYARLANWLADN 272


>gi|326789765|ref|YP_004307586.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427]
 gi|326540529|gb|ADZ82388.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427]
          Length = 288

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 154/283 (54%), Gaps = 18/283 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+S Y    +K  GQNFL+D  +L KI +++       VIEIG G G +TQ LL   A
Sbjct: 11  RAIISKYPFAFQKKFGQNFLIDPQVLDKIIDAAEITKEDCVIEIGPGIGCVTQALLE-KA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPY 127
            KVI IE D Q  PIL++     P+  ++I +D LKVD        SP   I+++ANLPY
Sbjct: 70  GKVISIEIDNQLIPILEEQFGAEPH-FKLIHNDVLKVDLAALIAEESPNRRIKVVANLPY 128

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++   +  D  P   ES+T++ QKEV +R++++  +  YG ++V   + +   ++
Sbjct: 129 YITTPIIMALLE-DELP--IESITVMVQKEVADRLSSKPGTKQYGAIAVSVNYFSTPELV 185

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLG 245
            D+  + F PSP V S VI    H  P+     ++ + +I + AF  RRKTL  +L   G
Sbjct: 186 VDVPRNCFMPSPNVDSAVIKLNVHEEPLVKTNNVKQMFRIIKAAFLLRRKTLLNTLAAHG 245

Query: 246 G--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                    + LL ++GI    R E LSIE+F R+++ + +++
Sbjct: 246 DLGIDKERLKELLDESGIGAQTRGETLSIEEFARLSDYIDEHR 288


>gi|329723947|gb|EGG60472.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU144]
          Length = 296

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/278 (36%), Positives = 149/278 (53%), Gaps = 22/278 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69
           + +L  Y    KK +GQNFL+D+NI+ KI E+S  +D  T VIE+G G G+LT+ L    
Sbjct: 13  RALLDQYGFNFKKSLGQNFLIDVNIINKIIEAS-HIDCTTGVIEVGPGMGSLTEQLAK-N 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANL 125
           A+KV+  E DQ+  P+LKD  S + N + II +D LK D  K           I ++ANL
Sbjct: 71  AKKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKTDIAKAVATHLQDCDKIMVVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L N +  D   P  +   ++ QKEVGER+ AQ  +  YG LS++  + T+ +
Sbjct: 130 PYYITTPILLNLMQQDV--PI-DGFVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYTETS 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLR---QS 240
            +  +   VF P P V S V+  +    P+      E   K+ + AF +RRKT+    Q+
Sbjct: 187 KVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEGFFKLAKAAFAQRRKTINNNYQN 246

Query: 241 LKRLGGEN------LLHQAGIETNLRAENLSIEDFCRI 272
             + G +N       L  AGI+   R E L+I+DF  +
Sbjct: 247 FFKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATL 284


>gi|90020384|ref|YP_526211.1| dimethyladenosine transferase [Saccharophagus degradans 2-40]
 gi|119365059|sp|Q21MT0|RSMA_SACD2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|89949984|gb|ABD79999.1| dimethyladenosine transferase [Saccharophagus degradans 2-40]
          Length = 268

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 136/257 (52%), Gaps = 7/257 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  S G      ++EIG G G +T  L+      + V+E D+ 
Sbjct: 15  RKRFGQNFLEDQGIINAIVRSIGPKASDNLVEIGPGKGAITAQLIE-SCPSMQVVELDRD 73

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PIL    + + N   I Q DALK DF +      P+R++ NLPYNI T L+F+ +S  
Sbjct: 74  LIPILLAQFAIY-NDFRIHQTDALKFDFGQLATPERPLRVVGNLPYNISTPLIFHLLS-- 130

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +      +  + QKEV  R+ A     +YGRLSV+T +  +   +F++ P  F P PKV
Sbjct: 131 -FGELIADMHFMLQKEVVLRLAAGPGDKNYGRLSVMTQYVCQVENLFEVPPECFNPRPKV 189

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++   P+     +    + L K+ + AF +RRKTLR +LK L  E  L    I+   
Sbjct: 190 DSAIVRLTPYRTQPFVAAHPDKLAKLVKTAFAQRRKTLRNNLKNLDEELDLEALDIDLTR 249

Query: 260 RAENLSIEDFCRITNIL 276
           RAE+LS+E++  ++N L
Sbjct: 250 RAESLSLEEYVNLSNTL 266


>gi|238897970|ref|YP_002923650.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|259494251|sp|C4K4K9|RSMA_HAMD5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|229465728|gb|ACQ67502.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 267

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/263 (37%), Positives = 142/263 (53%), Gaps = 16/263 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D  ++ +I  S       T+IEIG G G LT + L     K++VIE D+ 
Sbjct: 12  KKRFGQNFLTDEFVIDQIISSIHPSPEQTLIEIGPGLGALT-LPLADQMDKILVIELDRH 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNW 137
               L D  +QHP   ++L + Q D + V+F +       P+RI+ NLPYNI T LLF+ 
Sbjct: 71  ----LADRLNQHPQLKDKLILYQQDVMTVNFSELSATFKQPLRILGNLPYNISTPLLFHL 126

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                     + +  + Q+EV  R+ A  N+  YGRLSV+  +  K   + ++ P  F P
Sbjct: 127 FKDIHR---IDDMHFMLQREVVNRLLAAPNTKAYGRLSVMVQYHCKVIPILEVPPDAFTP 183

Query: 198 SPKVTSTVIHFIPHL---NPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            PKV S +I  +P+    +P P   +E L  +T++AF +RRKTL  SL  L  +  L + 
Sbjct: 184 IPKVYSAMIRLLPYRSLSHPYPVTDIERLNLVTRQAFNQRRKTLHNSLGALFTDQELAET 243

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
           GI   LRAEN+S+E +C + N L
Sbjct: 244 GICPKLRAENVSVEQYCLLANRL 266


>gi|187732780|ref|YP_001878864.1| dimethyladenosine transferase [Shigella boydii CDC 3083-94]
 gi|226732626|sp|B2U259|RSMA_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|187429772|gb|ACD09046.1| dimethyladenosine transferase [Shigella boydii CDC 3083-94]
          Length = 273

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   G++  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGLDPAMRAENISVAQYCQMANYLAEN 267


>gi|148977505|ref|ZP_01814094.1| dimethyladenosine transferase [Vibrionales bacterium SWAT-3]
 gi|145963300|gb|EDK28566.1| dimethyladenosine transferase [Vibrionales bacterium SWAT-3]
          Length = 271

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/265 (35%), Positives = 145/265 (54%), Gaps = 13/265 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTVIELDRD 70

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP+   +L I + DA+K DFE+    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPDLADKLTIHEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   S  YGRL+V+  +  K T + ++ P  F P 
Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVTPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P+ + P P   L+ L ++ +E F +RRKT+R   K L  +++L + GI 
Sbjct: 184 PKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKDVLEELGIN 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281
            ++R ENL+++ F  + N L DN +
Sbjct: 244 PSMRPENLTLQQFVDMANWLHDNHN 268


>gi|293364728|ref|ZP_06611445.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
 gi|307702974|ref|ZP_07639921.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
 gi|291316178|gb|EFE56614.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
 gi|307623367|gb|EFO02357.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
          Length = 290

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+  LT  A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTE-FLTERA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEIKDKLTKALDQAGLSPSVRGEALSLAEFASLADAL 285


>gi|222031885|emb|CAP74623.1| Dimethyladenosine transferase [Escherichia coli LF82]
 gi|312944659|gb|ADR25486.1| dimethyladenosine transferase [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 273

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F E    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L ++
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAES 267


>gi|242241578|ref|ZP_04796023.1| dimethyladenosine transferase [Staphylococcus epidermidis W23144]
 gi|242234959|gb|EES37270.1| dimethyladenosine transferase [Staphylococcus epidermidis W23144]
 gi|319399650|gb|EFV87904.1| dimethyladenosine transferase [Staphylococcus epidermidis FRI909]
          Length = 296

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/277 (35%), Positives = 146/277 (52%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+ KI E+S       VIE+G G G+LT+ L    A
Sbjct: 13  RALLDQYGFNFKKSLGQNFLIDVNIINKIIEASHIDCATGVIEVGPGMGSLTEQLAK-NA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
           +KV+  E DQ+  P+LKD  S + N + II +D LK D  K           I ++ANLP
Sbjct: 72  KKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKADIAKAVATHLQDCDKIMVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A   +  YG LS++  + T+ + 
Sbjct: 131 YYITTPILLNLMQQDV--PI-DGFVVMMQKEVGERLNAHVGTKAYGSLSIVAQYYTETSK 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLR---QSL 241
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+    Q+ 
Sbjct: 188 VLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEAFFKLAKAAFAQRRKTINNNYQNF 247

Query: 242 KRLGGEN------LLHQAGIETNLRAENLSIEDFCRI 272
            + G +N       L  AGI+   R E L+I+DF  +
Sbjct: 248 FKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATL 284


>gi|325663734|ref|ZP_08152138.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325470227|gb|EGC73460.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 298

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 153/289 (52%), Gaps = 21/289 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y    +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 5   TLGNPQNTI-AVLQKYNFSFQKKFGQNFLIDTHVLDKIIRSAEITKDDFVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ  L   AR+V+ +E D+   PIL+D  S + N + +I +D LK+D  K     N   P
Sbjct: 64  TQ-YLACAAREVVAVEIDKALIPILEDTLSSYDN-VTVINEDVLKLDIVKLAQERNGGKP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +       +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---VQSITVMVQKEVADRMQVGPGTKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235
            +  K  +  ++ P+ F P PKV S VI    H  P P  +E  K   +I + +F +RRK
Sbjct: 179 QYYAKPYIAANVPPNCFMPRPKVGSAVIRLECHEEP-PVQVEDEKLMFRIIRASFNQRRK 237

Query: 236 TLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL   LK        R G E  + + G   ++R E L++E+F  ++NI+
Sbjct: 238 TLANGLKNSPEISLSREGIEQAIAELGKGASVRGEALNLEEFATLSNIV 286


>gi|228476972|ref|ZP_04061610.1| dimethyladenosine transferase [Streptococcus salivarius SK126]
 gi|228250991|gb|EEK10162.1| dimethyladenosine transferase [Streptococcus salivarius SK126]
          Length = 290

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL+D    H N + +I +D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILEDTLRDHDN-VNVINEDVLKADLQTRVKEFKNPELPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ NS  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNSKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +   L ++ + +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMTRREQPLVEVKDEDFLFRVAKASFVHRRKTLWNNLTNH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI DF  +++ L +
Sbjct: 245 FGKSEEVKAKLEQALEIADIKPSIRGEALSISDFAHLSDALRE 287


>gi|168333630|ref|ZP_02691890.1| dimethyladenosine transferase [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 283

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 154/281 (54%), Gaps = 19/281 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +LS Y  I KK  GQNFL+D ++L KI  ++       V+EIG G G++TQ LL   A
Sbjct: 11  KAVLSKYPFILKKKYGQNFLIDEHVLTKIISAANISKNDCVLEIGPGIGSVTQELLE-HA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++VI +E D++  PIL +    + N   +I +D LK+D ++     + I+++ANLPY I 
Sbjct: 70  QEVIAVEIDKELIPILNNQFGSYDN-FALINEDFLKLDLKEVLKGXTNIKVVANLPYYIT 128

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   + ++   PF  ++T++ QKEV +RITA   +  YG +S    +  K  ++ ++
Sbjct: 129 TPIIMALLESEL--PFI-NITVMVQKEVADRITALPGTKEYGSISASIAYYAKVRLVANV 185

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSL------ 241
             H F P P V S VI    + NP P  L   E   K+ + AF +RRKT+  +L      
Sbjct: 186 PMHSFLPRPTVNSAVIELELYRNP-PVDLKNKEVFFKVIRAAFSQRRKTILNTLSNNFNI 244

Query: 242 --KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             K+L  +NLL  A I  N+R E L   +F  ++N++   Q
Sbjct: 245 DKKQL--KNLLEVADIAENVRGETLGTSEFAILSNLICSTQ 283


>gi|326336599|ref|ZP_08202768.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325691264|gb|EGD33234.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 259

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/259 (40%), Positives = 139/259 (53%), Gaps = 10/259 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           PKKY+GQ+FL DLNI ++IA ++ S DG   V+EIGAG G LTQ LL L   +  VIE D
Sbjct: 8   PKKYLGQHFLTDLNIAQQIA-NTLSFDGYKIVLEIGAGTGVLTQFLL-LKKTETFVIEID 65

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           ++    L+    Q  N   II  D LK D   +F+ +S   II N PYNI ++++F  + 
Sbjct: 66  KESVEYLQVHFPQLKNH--IIAKDFLKFDIVSYFSKAS-FAIIGNFPYNISSQIIFKLLE 122

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              + P       +FQKEV ERI  +  S  YG LSVLT        +F +  +VF P P
Sbjct: 123 IRFFVP---EFAGMFQKEVAERICEKAGSKAYGILSVLTQAFYDTEYLFTVPENVFNPPP 179

Query: 200 KVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S VIH     N  +PC       I +  FG+RRKTLR SLK    E    +     +
Sbjct: 180 KVKSGVIHLKRKENYSLPCDERLFFTIVKTTFGQRRKTLRNSLKSFLSEKEELKVHSVFD 239

Query: 259 LRAENLSIEDFCRITNILT 277
            R E LS+E+F  +T  LT
Sbjct: 240 RRPETLSVEEFITLTQWLT 258


>gi|300923999|ref|ZP_07140000.1| dimethyladenosine transferase [Escherichia coli MS 182-1]
 gi|301330178|ref|ZP_07222840.1| dimethyladenosine transferase [Escherichia coli MS 78-1]
 gi|300419768|gb|EFK03079.1| dimethyladenosine transferase [Escherichia coli MS 182-1]
 gi|300843818|gb|EFK71578.1| dimethyladenosine transferase [Escherichia coli MS 78-1]
          Length = 273

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 145/285 (50%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +    GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVFTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|330955094|gb|EGH55354.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae Cit 7]
          Length = 268

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R+  NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNGQFANKPN-FNLHQGDALKFDFNTLGAEPRSLRVGGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHHVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R+ + L++
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSE 263


>gi|330898897|gb|EGH30316.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 268

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           +G++ +LR E L +  F R  + L++
Sbjct: 238 SGVDGSLRPEQLDLAVFVRRADTLSE 263


>gi|323190266|gb|EFZ75542.1| dimethyladenosine transferase [Escherichia coli RN587/1]
          Length = 273

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F E    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAAKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L ++
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAES 267


>gi|242371677|ref|ZP_04817251.1| dimethyladenosine transferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242350626|gb|EES42227.1| dimethyladenosine transferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 296

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 147/277 (53%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+ KI E+S   +   +IE+G G G+LT+ L    A
Sbjct: 13  RALLDQYGFNFKKSLGQNFLVDVNIINKIIEASQIDETTGIIEVGPGMGSLTEQLAK-HA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
           +KV+  E DQ+  P+L D  S + N + II +D LK D  K    + +    I ++ANLP
Sbjct: 72  KKVMSFEIDQRLIPVLNDTLSPYDN-VTIINEDILKADIGKAVNTYLDDCDKIMVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A   +  YG LS++  + T+ + 
Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNASVGTKAYGSLSIVAQYYTETSK 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 188 VLTVPKSVFMPPPNVDSIVVKLMQREEPLVDIDDEEAFFKLAKAAFAQRRKTINNNYQNF 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRI 272
             +         N L  AGI+   R E L+I+DF ++
Sbjct: 248 FKDGKQYKSSILNWLENAGIDPKRRGETLTIQDFAKL 284


>gi|113461695|ref|YP_719764.1| dimethyladenosine transferase [Haemophilus somnus 129PT]
 gi|170718610|ref|YP_001783811.1| dimethyladenosine transferase [Haemophilus somnus 2336]
 gi|123132270|sp|Q0I5C3|RSMA_HAES1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028810|sp|B0URM7|RSMA_HAES2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|112823738|gb|ABI25827.1| dimethyladenosine transferase [Haemophilus somnus 129PT]
 gi|168826739|gb|ACA32110.1| dimethyladenosine transferase [Haemophilus somnus 2336]
          Length = 281

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 148/280 (52%), Gaps = 22/280 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT L H     +K  GQNFL D NI++ I  +        ++EIG G G LT+ +     
Sbjct: 4   KTHLGH---TARKRFGQNFLHDNNIIQNIVMAIYPQKEQFLVEIGPGLGALTEPVAE-KV 59

Query: 71  RKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NISSP---IRI 121
            ++ VIE D+     L+     HP    +L +I+ DA++ +FE+ +   N++     +R+
Sbjct: 60  ERLTVIELDRDLAERLR----HHPFLHQKLNVIEYDAMQFNFEQLYIDENLAEKNQKLRV 115

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGRL+++  + 
Sbjct: 116 FGNLPYNISTPLMFHLFK---YHAIIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYF 172

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++T +AF +RRKTLR 
Sbjct: 173 CQVLPVLEVPPTAFKPAPKVESAVVRLIPHKELPYPVKDLYWLNRVTTQAFNQRRKTLRN 232

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +L  L     L    I+   RAENLSI D+ R+ N L DN
Sbjct: 233 ALSTLFSAEKLTALAIDLEARAENLSIADYARLANYLADN 272


>gi|116871577|ref|YP_848358.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458009|sp|A0AEZ3|RSMA_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116740455|emb|CAK19575.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 295

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/286 (35%), Positives = 151/286 (52%), Gaps = 29/286 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++G      VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAGISKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVITQQFSKSELPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239
           A + F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL    
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNL 244

Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278
                +LK    E +  L+  GI+   R E L I +F +++N L D
Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290


>gi|125974582|ref|YP_001038492.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405]
 gi|256004056|ref|ZP_05429041.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360]
 gi|281419107|ref|ZP_06250124.1| dimethyladenosine transferase [Clostridium thermocellum JW20]
 gi|125714807|gb|ABN53299.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405]
 gi|255991979|gb|EEU02076.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360]
 gi|281407256|gb|EFB37517.1| dimethyladenosine transferase [Clostridium thermocellum JW20]
 gi|316941700|gb|ADU75734.1| dimethyladenosine transferase [Clostridium thermocellum DSM 1313]
          Length = 284

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 149/277 (53%), Gaps = 16/277 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y +   K +GQNFL+D NI+K+I + +   +   VIEIG G G++T + L   A
Sbjct: 6   KKLIQKYNLKLTKSLGQNFLIDDNIVKRIVDVAEITEKDLVIEIGPGVGSMT-VELAKRA 64

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            KV+ +E D++  P L+D   +  N ++II  D + V+  +F   S  ++++ANLPY I 
Sbjct: 65  GKVVAVEIDKRLIPALEDNLGEFSN-VDIINKDIMDVNINEFRGESGNVKVVANLPYYIT 123

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +  +      + +  + QKEV +R+ A      YG LSV   + TK    FD+
Sbjct: 124 TPIIMKLLEENNDN--IDIMVFMVQKEVAQRMVASPGKKDYGALSVAVQYYTKPEKAFDV 181

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSL---KRL 244
            PH F P P+V STVI    +  P P  L   +    + + AFG+RRKTL  +L   K L
Sbjct: 182 PPHCFVPQPEVDSTVIKLKVNETP-PVKLMDKDYFFTVVKAAFGQRRKTLVNALHNFKAL 240

Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           G      + +L + GI+ N R E LSI  F  ++N+L
Sbjct: 241 GKSKEEIKEILKKLGIDENARGETLSITQFAELSNLL 277


>gi|322377595|ref|ZP_08052085.1| dimethyladenosine transferase [Streptococcus sp. M334]
 gi|321281360|gb|EFX58370.1| dimethyladenosine transferase [Streptococcus sp. M334]
          Length = 290

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N + PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPALPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADAL 285


>gi|220935881|ref|YP_002514780.1| dimethyladenosine transferase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997191|gb|ACL73793.1| dimethyladenosine transferase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 267

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 135/257 (52%), Gaps = 7/257 (2%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           IP+K  GQ+FL +  I++++  +     G  ++EIG G G LT  LL    R + V+E D
Sbjct: 6   IPRKRFGQHFLHETAIIERMVAAIAPRPGEALVEIGPGLGALTAPLLER-CRVLHVVELD 64

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +   P L +   Q    L + Q DAL+ DF         +R++ NLPYNI T L+F+ + 
Sbjct: 65  RDVIPPLVE-RCQGLGELRVHQADALRFDFATLAPEGGQLRVVGNLPYNISTPLIFHLLK 123

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           +    P    +  L QKEV +R+ A  N+  YGRLSV+T +  +A  +F + P  F P P
Sbjct: 124 SA---PRIRDMHFLLQKEVVDRLAAAPNTRDYGRLSVMTQYHCRAEALFRVGPGAFRPPP 180

Query: 200 KVTSTVIHFIP-HLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S  +   P    P P   E+L   +  +AF +RRKTLR +++ +   + +  AG++ 
Sbjct: 181 KVDSAYVRLTPWETLPHPAADEALFASLVNQAFTQRRKTLRNAVRGMADADTIEAAGLDP 240

Query: 258 NLRAENLSIEDFCRITN 274
             R E LS+  F  + N
Sbjct: 241 AARPETLSVAQFVALAN 257


>gi|254517379|ref|ZP_05129436.1| dimethyladenosine transferase [gamma proteobacterium NOR5-3]
 gi|219674217|gb|EED30586.1| dimethyladenosine transferase [gamma proteobacterium NOR5-3]
          Length = 270

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 132/257 (51%), Gaps = 7/257 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+ ++  +    +   ++EIG G G LT  L+  G  ++  IE D+ 
Sbjct: 13  RKRFGQNFLRDPGIIDRLERAIAPAESQHLVEIGPGLGALTDALVQSGC-QLDAIELDRD 71

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L    S HPN   +   DAL+ DF         +R++ NLPYNI T L+F  +   
Sbjct: 72  LVTPLLAAFSIHPN-FTLHSADALRFDFGSVVRGDEQLRVVGNLPYNISTPLIFRLLEQA 130

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           T     + +  + Q EV +R+T+Q  S H+GRL ++  +  +  ++F++ P  F P PKV
Sbjct: 131 T---IIKDMHFMLQLEVVQRLTSQPGSKHWGRLGIMAQYLCRTELLFEVPPEAFDPPPKV 187

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S +I   PH +P+   C    L+K+ + AF +RRKTLR +LK +     +   GI+   
Sbjct: 188 QSAIIRLTPHASPLFPDCNAAVLEKVVKAAFAQRRKTLRNNLKGMLSNEAIEGLGIDPGC 247

Query: 260 RAENLSIEDFCRITNIL 276
           RAE L +  F  +   L
Sbjct: 248 RAETLELSQFVALAKAL 264


>gi|332686219|ref|YP_004455993.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311]
 gi|332370228|dbj|BAK21184.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311]
          Length = 294

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 146/285 (51%), Gaps = 20/285 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL + NILKKI  ++     + VIE+G G G LT+ L    A
Sbjct: 14  KEILKKYDFSLKKSLGQNFLTEPNILKKIVATANLTKEVNVIEVGPGIGALTEQLAQ-QA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
            +V+  E D     IL D + Q  N + I+  D LK D  K     F  + PI+I+ANLP
Sbjct: 73  GQVLAFEIDHNLIRILAD-TLQPYNNITIVNQDVLKTDLVKETQAVFQQAYPIKIVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L  ++ +D      E + ++ QKEV +RI+A+  +  YG LS+   +  +AT+
Sbjct: 132 YYITTPILMYFLQSDL---IVEEMVVMMQKEVADRISAKPGTKAYGSLSIAVQYFMEATI 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VI       PI   +  +   K+T+ AF  RRKTL  +L   
Sbjct: 189 AFIVPKTVFVPQPNVDSAVIKLTRRSKPIVDVINEKEFFKLTRAAFQLRRKTLWNNLLHF 248

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            G+           L QA I  + R E LS+ +F R++N L  N+
Sbjct: 249 YGKEESTKQWLIKSLEQAEIVASRRGETLSLAEFARLSNSLIINR 293


>gi|229917418|ref|YP_002886064.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b]
 gi|229468847|gb|ACQ70619.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b]
          Length = 292

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 152/281 (54%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL+DLNIL KI  ++   +   V+EIG G G+LT+      A
Sbjct: 11  KAILERHGFSFKKSLGQNFLIDLNILSKIVGAAELSEVSGVLEIGPGIGSLTEQSAK-RA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNIS-SPIRIIAN 124
           +KV+ +E DQ+  PIL D  S +P+ +++I  DAL++D      ++F N     I ++AN
Sbjct: 70  KKVVALEIDQRLLPILDDTMSPYPH-VKVIHGDALELDLREIVEQEFLNEGIEDISVVAN 128

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY + T ++   + +      + SL ++ QKEV ERI A+  +  YG LS+   +  +A
Sbjct: 129 LPYYVTTPIIMRLLESGVK---FRSLVMMIQKEVAERIGAKPGTKAYGSLSIAIQYYAEA 185

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242
            + F +  +VF P+P V S VI       P     +      + + +F +RRKT+  +L 
Sbjct: 186 EVSFIVPKNVFIPAPNVDSAVITLRMRKEPAVQVKDEAFFFDVARASFAQRRKTILNNLT 245

Query: 243 RLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              G       E  LH+AGI+   R E LS+E+F R+++ +
Sbjct: 246 NYIGKEHKVELERSLHEAGIDPKRRGETLSLEEFARLSDTI 286


>gi|331650945|ref|ZP_08351973.1| dimethyladenosine transferase [Escherichia coli M718]
 gi|331051399|gb|EGI23448.1| dimethyladenosine transferase [Escherichia coli M718]
          Length = 273

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT +AF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTKAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|225575697|ref|ZP_03784307.1| hypothetical protein RUMHYD_03790 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037077|gb|EEG47323.1| hypothetical protein RUMHYD_03790 [Blautia hydrogenotrophica DSM
           10507]
          Length = 294

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 149/285 (52%), Gaps = 20/285 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + +K  GQNFL+D ++L KI  +S       V+EIG G G +TQ L    AR+
Sbjct: 15  ILKKYDFVFQKRFGQNFLIDTHVLDKIIRASDIQKSDFVLEIGPGIGTMTQYLAD-AARE 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129
           V+ +E D+   PILKD  S + N + +I +D LKVD  K     N   PI+++ANLPY I
Sbjct: 74  VVAVEIDKSLIPILKDTLSSYSN-VTVINEDVLKVDIRKIAEERNEGKPIKVVANLPYYI 132

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++             ES+T++ QKEV +R+     +  YG LS+   +  +  M+ +
Sbjct: 133 TTPIIMGLFEKKVP---IESITIMVQKEVADRMKVGPGTKDYGALSLAVQYYAEPKMIAN 189

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGG 246
           +  + F P PKV S VI  + H  P P  ++   +   + + +F +RRKTL   LK    
Sbjct: 190 VPSNCFMPRPKVGSAVIQLLRHEKP-PVEVDDESQMFAMIRASFNQRRKTLVNGLKNSRE 248

Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            NL        L   G+  N+R E L++++F  ++N L   ++++
Sbjct: 249 LNLQKEEIEEALTACGLSLNVRGEMLTLKEFSDLSNFLVRKRNVS 293


>gi|307705634|ref|ZP_07642485.1| dimethyladenosine transferase [Streptococcus mitis SK597]
 gi|307620810|gb|EFN99895.1| dimethyladenosine transferase [Streptococcus mitis SK597]
          Length = 290

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     KI++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDESFFFKISKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADAL 285


>gi|312109189|ref|YP_003987505.1| dimethyladenosine transferase [Geobacillus sp. Y4.1MC1]
 gi|311214290|gb|ADP72894.1| dimethyladenosine transferase [Geobacillus sp. Y4.1MC1]
          Length = 295

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 150/284 (52%), Gaps = 22/284 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  Y    KK +GQNFL+D NIL+KI + +G       IEIG G G LT+ L    A
Sbjct: 14  REILEKYGFSFKKSLGQNFLIDTNILRKIVDVAGLSRETGAIEIGPGIGALTEQL-ARRA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           +KV+  E DQ+  PIL+D  S + N + II  D LK D  +     F  ++ I ++ANLP
Sbjct: 73  KKVVAFEIDQRLLPILEDTLSPYEN-VRIIHQDVLKADIHRVIAEEFTDAADIMVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   ++ D  P     + ++ QKEV +RI+AQ  +  YG LS+   + T+A  
Sbjct: 132 YYVTTPIIMKLLT-DNLP--IRGIVVMLQKEVADRISAQPGTKDYGSLSIAIQYYTEAEK 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL-- 241
           +  +   VF P P V S VI  I    P P  ++      ++ + +F +RRKT+  +L  
Sbjct: 189 IMTVPRTVFIPQPNVDSAVIRLIKRKQP-PVDVDDESFFFQVVRASFAQRRKTILNNLIS 247

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                  ++   E +L + GI+   R E L++E+F  ++N L +
Sbjct: 248 NLPNGKARKEKIERILTENGIDPRRRGETLTMEEFAALSNALRE 291


>gi|88797588|ref|ZP_01113177.1| dimethyladenosine transferase [Reinekea sp. MED297]
 gi|88779760|gb|EAR10946.1| dimethyladenosine transferase [Reinekea sp. MED297]
          Length = 262

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 135/261 (51%), Gaps = 6/261 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D NI+ +I  S        ++EIG G G +T+ LL      + V+E D+ 
Sbjct: 5   RKRFGQNFLHDQNIIDRIVGSIMPKPDQHMVEIGPGRGAITEPLLEATDGHLDVVELDRD 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P+L+    ++   L I + DAL+ DF        P+R++ NLPYNI T L+F+ +S  
Sbjct: 65  LIPMLRAQFFRYEG-LTIHEADALQFDFGSLATDDRPLRLVGNLPYNISTPLMFHLLS-- 121

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +    + +  + QKEV +R+ A      YGRL ++  +  +A  +F + P  F P+PKV
Sbjct: 122 -YSDVIKDMHFMLQKEVVQRLCAAPGDNAYGRLGIMMQYHCEARYLFTVPPGAFSPAPKV 180

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++   P   P       E   K+ + +F +RRKTL+ +LK L   +     GI+   
Sbjct: 181 ESAIVRLTPRKAPKREATNYELFAKVVKASFAQRRKTLKNNLKDLLDGDGFEALGIQPGA 240

Query: 260 RAENLSIEDFCRITNILTDNQ 280
           RAE L I+DF RI N +   Q
Sbjct: 241 RAETLPIDDFVRIANYVDSVQ 261


>gi|125624667|ref|YP_001033150.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493475|emb|CAL98452.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071459|gb|ADJ60859.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 294

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/268 (36%), Positives = 144/268 (53%), Gaps = 18/268 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D NIL KI E++     + VIEIG G G+L+Q LL   A +V+  E D+ 
Sbjct: 27  KKKFGQNFLTDHNILTKITETADLSKEVNVIEIGPGIGSLSQYLLEEAA-EVMAFEIDKS 85

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNW 137
             PIL++  + + N   ++  D LKVD     +KF N + PI+++ANLPY I T +L + 
Sbjct: 86  LIPILEETMAPYDN-FTLVSADILKVDLLSEIQKFKNPNLPIKVVANLPYYITTPILMHL 144

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I +    PF E   ++ QKEV +RI A   +  YG LS+   +  +A++ F +   VF P
Sbjct: 145 IESKI--PFSE-FVVMMQKEVADRIAASPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201

Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG-------EN 248
           +P V S ++  +    P+    +     K    +F  RRKTL  +++   G       E 
Sbjct: 202 APNVDSAILKMVRREEPLVEVEDEEWFFKTMHSSFVHRRKTLMNNMQAAFGKESKPEIEK 261

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
           LL QA I   +R E LSIE+F ++ + L
Sbjct: 262 LLAQAEISPTIRGEALSIEEFAKLADAL 289


>gi|116628487|ref|YP_821106.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9]
 gi|122266918|sp|Q03IR2|RSMA_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116101764|gb|ABJ66910.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9]
          Length = 290

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI  ++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEINKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D++  PIL+D    H N +++I +D LK D +    +F N   PI+++ANLP
Sbjct: 69  SEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +     +
Sbjct: 128 YYITTPILMHLIESKI--PFSE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTTKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         +  L  A I+ ++R E LSI DF R+++ L +
Sbjct: 245 FGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287


>gi|224826759|ref|ZP_03699859.1| dimethyladenosine transferase [Lutiella nitroferrum 2002]
 gi|224600979|gb|EEG07162.1| dimethyladenosine transferase [Lutiella nitroferrum 2002]
          Length = 258

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/269 (36%), Positives = 147/269 (54%), Gaps = 19/269 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQNFL D +++  I  +     G  V+EIG G G LT+ LL  L    V+ I
Sbjct: 3   KHIPRKRFGQNFLQDASVIASIVHAVNPQPGDIVVEIGPGLGALTRPLLARLPHLHVVEI 62

Query: 77  EKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           ++D     I+  + S+ P  RL I + DAL  DF    +I +  ++I NLPYNI T LLF
Sbjct: 63  DRD-----IISRLKSEFPPERLTIHEGDALAFDFS---SIGTRFKLIGNLPYNISTPLLF 114

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +  S   +      +  + QKEV ER+ A+ ++  YGRL+V+  +R +   +  + P  F
Sbjct: 115 HLAS---YGDRVVDMHFMLQKEVIERMVAEPSTADYGRLTVMLQYRFEMEQILHVPPGAF 171

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES----LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           +P PKV S V+  IP   P  C + +    L+ +   AF +RRKTLR +LK +  E    
Sbjct: 172 WPPPKVESAVVRMIP--APGRCGVATDEAELEALVTLAFSQRRKTLRNNLKGVLDEADFA 229

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280
             GI++ LR ENL++E +  + N+L+  +
Sbjct: 230 ALGIDSGLRPENLTVEQYVAMANLLSSRR 258


>gi|114609907|ref|XP_001143221.1| PREDICTED: transcription factor B1, mitochondrial isoform 2 [Pan
           troglodytes]
 gi|114609909|ref|XP_001143300.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 3
           [Pan troglodytes]
          Length = 346

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 145/297 (48%), Gaps = 26/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F+ S        P  +
Sbjct: 77  DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279
           RK   + L+ L  E         LL  A I+  LR   LSI  F   C +   + D 
Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCEVYRKMCDE 313


>gi|91794239|ref|YP_563890.1| dimethyladenosine transferase [Shewanella denitrificans OS217]
 gi|123356543|sp|Q12K59|RSMA_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91716241|gb|ABE56167.1| dimethyladenosine transferase [Shewanella denitrificans OS217]
          Length = 267

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 150/283 (53%), Gaps = 21/283 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D +I+ +I  +    +   ++EIG G G +T
Sbjct: 1   MSNKVH-----LGH---TARKRFGQNFLTDDSIISRIVGAISPDNDHVMVEIGPGLGAIT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119
           + +  +   K+ V+E D+     L++    HP   ++L+I Q DAL+ DF         +
Sbjct: 53  EPV-AMSIDKLSVVELDRDLVERLQN----HPTLKDKLDIHQGDALQFDFSTLQQAGKKM 107

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++  NLPYNI T L+F+      +    E++  + QKEV  R++A      YGRL+V+  
Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAEIIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQ 164

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTL 237
           +  +   + ++ PH F P+PKV S V+  +P+ N P PC  +  L+ +   AF  RRKTL
Sbjct: 165 YYCQVVPVLEVPPHSFTPAPKVDSAVVRLLPYANKPWPCKDVTVLRHLCTTAFNMRRKTL 224

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           R +LK+L  +       I+ +LR E +S+E +  + N+L D Q
Sbjct: 225 RNNLKQLISDEEFGLLNIDASLRPEQISVEQYVALANLLCDKQ 267


>gi|330814914|ref|XP_003291474.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum]
 gi|325078362|gb|EGC32018.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum]
          Length = 489

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 146/287 (50%), Gaps = 30/287 (10%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +L+ I+  + +  K+ + QNFL+D NI  KI ++SG     TVIE+GAGPG LT+ LLT 
Sbjct: 10  TLQEIIRTFGLSAKQQLSQNFLIDKNITDKICKTSGGFKDCTVIEVGAGPGGLTRSLLTS 69

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------NISSP 118
            A+KVI +E D +F+P LK +      R+++I  + L+VD  K               S 
Sbjct: 70  EAKKVIAVEMDPRFYPALKMLEDASEGRMKLIMANMLEVDEAKILFENGAEFAPWEEKSK 129

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++II NLP+N+GT L+  WI   +     E L    +  +G        +  Y RLSV+ 
Sbjct: 130 VKIIGNLPFNVGTHLMLKWIRQISP---REGLYSFGRVPIG--------TADYSRLSVMV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK------ITQEAFGK 232
                  + + +    F P PKV + V+   P +NP+    E LK       + +E F  
Sbjct: 179 QQSAIPRITYQLPGKAFVPPPKVDAAVVEIEPRINPL--GKEPLKNHQYFEFVCRELFAH 236

Query: 233 RRKTLRQSLKRLG-GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           RRKT+   +K LG G + L +  I+   R +N+S++ F  +TN   D
Sbjct: 237 RRKTVSNVIKNLGNGADALLEGIIDPKTRPQNISVDQFVDLTNRYCD 283


>gi|295425701|ref|ZP_06818388.1| dimethyladenosine transferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295064717|gb|EFG55638.1| dimethyladenosine transferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 292

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 146/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D N +  I  ++   +G  VIEIG G G+LT+ LL  GA
Sbjct: 14  QAIINRYFVKAKKNLGQNFLVDQNAILGIVNAADIQEGDQVIEIGPGIGSLTEQLLLHGA 73

Query: 71  RKVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIR 120
            KV   E D     IL++     I  Q    R  ++  D L+ DF+K    FF+ S PI+
Sbjct: 74  -KVFAYEVDDSLPKILQNELPAKIGDQPLDQRFHLLLKDVLQADFKKDIGAFFDFSQPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  S  YG L++ T  
Sbjct: 133 VVANLPYYITTPIIFALAESDLR---FASLTLMMQKEVAERLEAKTGSKAYGPLTIATQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           R    +   +    F P PKV S+V+   P    P         K+ +  F +RRKTL  
Sbjct: 190 RMHVELALQVDHTSFMPRPKVDSSVVVLTPIEHKPDVGRRAHFNKVVKMCFAQRRKTLNN 249

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK L         L+   G++  +R E+L+I  F +I N + 
Sbjct: 250 NLKNLIPDADKRAELIASLGVDPKIRPEDLTIAQFIKIANAIA 292


>gi|256848354|ref|ZP_05553797.1| dimethyladenosine transferase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714952|gb|EEU29930.1| dimethyladenosine transferase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 298

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 150/293 (51%), Gaps = 22/293 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S   + I+  Y I  KK  GQNFL DLN+L  I +++       VIEIG+G G LT+ L 
Sbjct: 11  SQRTREIIKKYGIHAKKGFGQNFLTDLNVLTGIVDAAQITKQDNVIEIGSGLGALTEQLA 70

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRI 121
              A +V+ +E D    P+L D+ S + N +++I  D LK +      E+F + S P+++
Sbjct: 71  K-SAGEVVALEIDTDLLPLLADVLSPYKN-VKVINQDVLKANLPKLIQEEFTDPSRPVKV 128

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I + +L N +++      W ++ ++ QKEV ER+TA+  +  YG L++   + 
Sbjct: 129 VANLPYYITSPILMNLLNSSVQ---WAAICVMMQKEVAERLTAKVGTKQYGALTLAIEYS 185

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLR 238
             A + F +S H F P+P V S ++   P    L   P     L  + +  F  RRK L 
Sbjct: 186 MTAQLAFGVSRHSFVPAPNVDSAIVVLTPRTTALTEQPFDQAKLFSLIKTCFAHRRKNLW 245

Query: 239 QSLKRLGGENLLHQAGIETNL---------RAENLSIEDFCRITNILTDNQDI 282
            +LK L  +N   Q  ++  L         R E LS+  F ++ N L + Q I
Sbjct: 246 NNLKPLMRKNKTKQQAVKDALDHLQIASTDRPETLSLLQFIQLANGLHEKQII 298


>gi|148985565|ref|ZP_01818754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71]
 gi|147922285|gb|EDK73406.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71]
 gi|301800746|emb|CBW33394.1| dimethyladenosine transferase [Streptococcus pneumoniae OXC141]
          Length = 290

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAECAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|312134313|ref|YP_004001651.1| dimethyladenosine transferase [Caldicellulosiruptor owensensis OL]
 gi|311774364|gb|ADQ03851.1| dimethyladenosine transferase [Caldicellulosiruptor owensensis OL]
          Length = 282

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 152/272 (55%), Gaps = 17/272 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L   L  Y + P K +GQNFL+D N+++KI   S + +G  VIEIGAGPG LT  L  +
Sbjct: 9   ELLNFLKKYGLSPNKKLGQNFLVDENVVRKIILFSQA-EGKEVIEIGAGPGTLTVYLAEI 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            ARKV+ +E D++   +LK++    PN ++I+ +D LK++ +   N +  + I+ NLPY 
Sbjct: 68  -ARKVVAVEIDKKILNVLKEVCQDIPN-IQIVNNDFLKLNVKDLTN-TGRVYIVGNLPYY 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I +++LF       +    E  T++ QKEV +R+ A+  +  YG L+V   +  +    F
Sbjct: 125 ITSQILFKLFEEREY---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMKFYCEIEDYF 181

Query: 189 DISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR--- 243
            +S +VF+P P+V S V+   F   L  I        KI    F  RRKT+  +L     
Sbjct: 182 YVSKNVFYPKPEVDSAVLRARFKDSLPEIEH--RDFFKIVHACFSTRRKTILNALSNHFD 239

Query: 244 LGGENL---LHQAGIETNLRAENLSIEDFCRI 272
           +G + L   ++ A ++ NLRAE+LS++D+ R+
Sbjct: 240 IGKDKLKRIINMAEVDENLRAEDLSLDDYIRL 271


>gi|297180114|gb|ADI16337.1| dimethyladenosine transferase (rRNA methylation) [uncultured
           bacterium HF130_01F24]
          Length = 277

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 140/258 (54%), Gaps = 7/258 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D +++ KI  +        ++EIG G G +T+ L   GA K+  IE D  
Sbjct: 19  RKRFGQNFLHDKHVISKILGAVSPTKNDHILEIGPGFGAITKQLAQSGA-KLDCIELDAD 77

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LK    ++ + + I+Q DALK D        + +R++ NLPYNI T L+F+ + + 
Sbjct: 78  LAASLKTEYREYKS-VNILQADALKFDLNSIATKKNSLRVVGNLPYNISTPLIFHLLKSS 136

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +T + Q EV +R+ ++  S  YGRL ++  +  +   +F+I+   F P PKV
Sbjct: 137 Y---LIKDMTFMLQLEVIQRMVSKVGSKSYGRLGLMVQYYCEIEHLFNIASDAFVPRPKV 193

Query: 202 TSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S +    PH +P       E LK + Q AF +RRKT+R SL  L  E+LL +  +   L
Sbjct: 194 VSALARLKPHKSPTVTAKDPECLKTVIQTAFNQRRKTIRNSLSTLVSESLLEEIPVNNKL 253

Query: 260 RAENLSIEDFCRITNILT 277
           R ENL+++D+ RI++ ++
Sbjct: 254 RPENLTLQDYVRISDAIS 271


>gi|299820686|ref|ZP_07052575.1| dimethyladenosine transferase [Listeria grayi DSM 20601]
 gi|299817707|gb|EFI84942.1| dimethyladenosine transferase [Listeria grayi DSM 20601]
          Length = 295

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 148/284 (52%), Gaps = 29/284 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NILK+IAE++G       +EIG G G LT+  L   A++
Sbjct: 14  ILKKYHFLFKKSLGQNFLIDSNILKRIAETAGLNAESNAMEIGPGIGALTEH-LARNAKE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S +PN ++II  D LK D      E F +  +P++++ANLPY
Sbjct: 73  VVAFEIDQRLIPILDDTLSPYPN-VKIIHQDVLKADVRAALTENFSDPEAPLKVVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL   I  D       S+T + QKEV +RI+A   +  YG LS+   +  +
Sbjct: 132 YVTTPIILKLLHEGIPVD-------SMTFMLQKEVADRISAVPGTKSYGSLSIAIQYYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL 241
           A + F +   VF P P V S +IH      P+          ++T+ AF +RRKTL  +L
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAIIHLKRREKPLAHVENETFFFEVTRAAFAQRRKTLWNNL 244

Query: 242 ---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                     +   E  L   G++   R E +SI +F  +++ L
Sbjct: 245 VSKFPELKENKEELETELTARGLDLKRRGETMSIPEFAVLSDFL 288


>gi|15672672|ref|NP_266846.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491189|ref|YP_003353169.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|27151600|sp|Q9CHN8|RSMA_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|12723599|gb|AAK04788.1|AE006302_6 kasugamycin dimethyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281374930|gb|ADA64448.1| Dimethyladenosine transferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|326406235|gb|ADZ63306.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 294

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 144/268 (53%), Gaps = 18/268 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D NIL KI +++     + VIEIG G G+LTQ LL   A +V+  E D+ 
Sbjct: 27  KKKFGQNFLTDHNILTKITQTAELSKEVNVIEIGPGIGSLTQYLLEEAA-EVMAFEIDKS 85

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNW 137
             PIL++  + + N   ++  D LKVD     +KF N + PI+++ANLPY I T +L + 
Sbjct: 86  LIPILEETMAPYDN-FTLVSADILKVDLLSEIQKFKNPNLPIKVVANLPYYITTPILMHL 144

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I +    PF E   ++ QKEV +RI A   +  YG LS+   +  +A++ F +   VF P
Sbjct: 145 IESKI--PFSE-FVVMMQKEVADRIAASPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201

Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG-------EN 248
           +P V S ++  +    P+    +     K    +F  RRKTL  +L+   G       E 
Sbjct: 202 APNVDSAILKMVRREAPLVEVEDEEWFFKTMHSSFVHRRKTLMNNLQAAFGKESKPEIEK 261

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
           LL QA I   +R E LSIE+F ++ + L
Sbjct: 262 LLAQAEISPTIRGEALSIEEFAKLADAL 289


>gi|213962508|ref|ZP_03390770.1| dimethyladenosine transferase [Capnocytophaga sputigena Capno]
 gi|213954834|gb|EEB66154.1| dimethyladenosine transferase [Capnocytophaga sputigena Capno]
          Length = 257

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 146/262 (55%), Gaps = 14/262 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK++GQ+FL DLNI +KIA++  SL G   VIEIGAG G LTQ LL      V ++E D+
Sbjct: 7   KKHLGQHFLKDLNIAQKIADTL-SLKGYNKVIEIGAGMGVLTQFLLKKDV-DVHIVEIDK 64

Query: 81  QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    L+   + +P  + +II DD LK +   +  I  P  II N PYNI T+++F  + 
Sbjct: 65  ESVAYLE---THYPELKGKIIADDFLKYNIADY--IGEPFAIIGNFPYNISTQIVFKLLE 119

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              + P     + +FQKEV ERI   + S  YG LSVL      A+ +F +S  VF P P
Sbjct: 120 LREYVP---EFSGMFQKEVAERICEHEGSKTYGILSVLVQAFYDASYLFTVSEGVFNPPP 176

Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S VI  +   N    C ESL   + + AF +RRKTLR SLK+   +  L Q  I  +
Sbjct: 177 KVKSGVIRLVRKTNFHLDCDESLFFTVVKTAFNQRRKTLRNSLKQFLIDENLKQDSI-FD 235

Query: 259 LRAENLSIEDFCRITNILTDNQ 280
            R E L  +DF RIT ++++  
Sbjct: 236 KRPEQLPWQDFVRITKVISEQH 257


>gi|116333120|ref|YP_794647.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367]
 gi|122270191|sp|Q03T56|RSMA_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116098467|gb|ABJ63616.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367]
          Length = 296

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 145/279 (51%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL+ Y+++ KK +GQNFL DLNIL+ I  +    D   VIEIG G G LT+ +    A
Sbjct: 15  KAILNRYRLVAKKSLGQNFLSDLNILRNIVAAGDVNDHDNVIEIGPGIGALTEQIAK-RA 73

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
            KV+  E D+   P+L +    + N ++II +D LK +        F    P++++ANLP
Sbjct: 74  HKVVAFEIDENLLPVLDETLMDYKN-VKIINEDILKANLPAVVADEFEADRPLKLVANLP 132

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L   + +      +E++ ++ Q EV ER+ A+  +  YG LSV+  +R    +
Sbjct: 133 YYITTPILMGVLQSTVR---FEAIVVMMQAEVAERLVAEPGTKAYGSLSVIMQYRAHVEI 189

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F++    F P P V S +I   P   L   P   ++L    +  F  RRK+L  +L+ +
Sbjct: 190 AFNVPRTAFIPQPNVDSAIIRLTPREALPVNPYEDKALFSFVKGCFAHRRKSLWNNLQGI 249

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITN 274
            G         E +L+Q GI   LR E L++ +F  +TN
Sbjct: 250 FGKQPEVRERIETVLNQTGISRQLRPERLTLLNFIELTN 288


>gi|313902246|ref|ZP_07835652.1| dimethyladenosine transferase [Thermaerobacter subterraneus DSM
           13965]
 gi|313467476|gb|EFR62984.1| dimethyladenosine transferase [Thermaerobacter subterraneus DSM
           13965]
          Length = 320

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 19/280 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+  L  Y + P + +GQNFL+D N  ++I  +        VIE+G G G LT+ L    
Sbjct: 25  LRRWLERYGVRPSRRLGQNFLVDDNWAERIVAAVEPGPDDLVIEVGPGLGALTERLAQRA 84

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRIIANL 125
            R V  +E D++    L++     PN LE+++ D L VD ++  +       P+++ +NL
Sbjct: 85  GR-VRAVEVDRRLAAALRERLGHLPN-LELVEGDILAVDLDRLASRQDPAGGPVKLASNL 142

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I +  L  W+ A   P  WE   L  Q EV +R+ A   S  YG L+V   +  +  
Sbjct: 143 PYAITSPFLVRWLEA---PIRWERAVLTLQAEVVDRLVAAPGSAAYGALTVFVAYHARVE 199

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSL- 241
            +  +    F+P P+V S V+   PHL P P  +   E+L  + + AF +RRK L  +L 
Sbjct: 200 RLGTVPAGAFWPRPEVDSAVVRLWPHLRP-PVAVADPEALFALVRAAFSQRRKRLANALA 258

Query: 242 -----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                +R+  E     AGI+   R EN+ +E F R+ N L
Sbjct: 259 AHPAVERVQAEAACRAAGIDPGARPENVDLEGFARLANQL 298


>gi|296199503|ref|XP_002747175.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial
           [Callithrix jacchus]
          Length = 343

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 146/290 (50%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  SIREIIKLFRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTDAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F  ++  P       +
Sbjct: 77  SVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFPESLKRPWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNWISADTW--PPF---WESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W+ + +    PF      +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLESMSCRDGPFVYGRTQMTLTFQKEVAERLAATTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +F I    F P P+V   V+HF P ++P I    + ++K+ Q  F  R
Sbjct: 197 SVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIHPKIQQPFKLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L  L  E         LL  A ++  LR   LSI  F  + ++
Sbjct: 257 RKYCHRGLGMLFPEAQRLESTGRLLELADVDPTLRPRQLSIPQFKSLCDV 306


>gi|306830179|ref|ZP_07463363.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249]
 gi|304427705|gb|EFM30801.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249]
          Length = 290

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLIKALDQAGLSPSVRGEALSLAEFASLADAL 285


>gi|158321677|ref|YP_001514184.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs]
 gi|166987688|sp|A8MK56|RSMA_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|158141876|gb|ABW20188.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs]
          Length = 287

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 152/280 (54%), Gaps = 19/280 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+  Y+    K +GQNFL+D NIL  I + +   +G  +IE+G G G+LTQ +    A
Sbjct: 11  KEIVQKYEFKFSKSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAE-RA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPY 127
             V+ +E D+   PILK+    +PN +E+I +D LK+D  K      P   +++IANLPY
Sbjct: 70  DSVLAVEIDKTLIPILKETLGAYPN-VEVINEDVLKLDLHKLIEEKFPGRNVKVIANLPY 128

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            + T ++  ++  +  P   +SLT++ QKEV +R+ A   +  YG LS+   + +   ++
Sbjct: 129 YVTTPIIMKFLE-EKVP--VKSLTIMIQKEVADRMQAGPGTKDYGALSIAVQYYSNPKIL 185

Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL---- 241
             + P VF P PKV STVI   I     +    E L   + ++AFGKRRKTL  +L    
Sbjct: 186 LKVPPSVFIPQPKVESTVIRLDILDTPKVSVEREDLFFSLVKDAFGKRRKTLLNALSTGD 245

Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
               K L  E +L  + I+ N R E L+IE++  + N L 
Sbjct: 246 LKLEKSLLRE-VLAASNIDENRRGETLTIEEYGVLANNLA 284


>gi|254283714|ref|ZP_04958682.1| dimethyladenosine transferase [gamma proteobacterium NOR51-B]
 gi|219679917|gb|EED36266.1| dimethyladenosine transferase [gamma proteobacterium NOR51-B]
          Length = 265

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 139/258 (53%), Gaps = 7/258 (2%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQNFL D +++  IA++     G  ++EIG G G LTQ L++        IE D+
Sbjct: 13  PRKRFGQNFLRDQSVIDAIAQAINPQPGDHLVEIGPGEGALTQALISTEC-AYDAIELDR 71

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               +L    S + N   +   DAL  DF +       +R++ NLPYNI T L+F  +  
Sbjct: 72  DLTAVLLASFSIYSN-FALHSADALNFDFSQLRVSEEKLRVVGNLPYNISTPLIFKLLEN 130

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + Q EV +R++A   S H+GR+ V+  +  + T + D+ P  F+P+PK
Sbjct: 131 ID---IIRDMHFMLQLEVVQRLSAAPGSKHWGRVGVMAQYLCQVTHLIDVPPESFYPAPK 187

Query: 201 VTSTVIHFIP-HLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+   P H +P   C   +L+ +T+ AF +RRKTLR + K +  ++ L   GI+ N
Sbjct: 188 VQSAVVSLRPHHSSPYKACDPVALRTVTRHAFAQRRKTLRNNFKGIIDDSALEALGIDPN 247

Query: 259 LRAENLSIEDFCRITNIL 276
            RAE+L++ DF  + +++
Sbjct: 248 ARAESLALADFVSLASLM 265


>gi|168494774|ref|ZP_02718917.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06]
 gi|225855474|ref|YP_002736986.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA]
 gi|254807889|sp|C1CGR5|RSMA_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|183575340|gb|EDT95868.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06]
 gi|225722617|gb|ACO18470.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA]
          Length = 290

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N + PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLMPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|119944805|ref|YP_942485.1| dimethyladenosine transferase [Psychromonas ingrahamii 37]
 gi|166221692|sp|A1STS1|RSMA_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119863409|gb|ABM02886.1| dimethyladenosine transferase [Psychromonas ingrahamii 37]
          Length = 270

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 148/282 (52%), Gaps = 23/282 (8%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K+H     L H     +K  GQNFL D  I+  I  +        ++EIG G G LT
Sbjct: 1   MNDKTH-----LGH---TARKRFGQNFLHDDYIIDSIVGAIAPQWEDNIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119
           + + +   + + VIE D+     L    ++HP   ++L I Q DAL+ DF K  +   P+
Sbjct: 53  EPVAS-KVKCLNVIELDRDLAARL----AEHPVLGDKLNITQADALQFDFGKLASTERPL 107

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R+  NLPYNI T L+F+      +      +  + QKEV  R+ A  N   YGRL+V+  
Sbjct: 108 RVFGNLPYNISTPLMFHLFE---YADKISDMHFMLQKEVVNRLCAGPNCKAYGRLTVMAQ 164

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ---EAFGKRRKT 236
           +  +   + ++ P  F P+PKV S V+   P+  P P   +SLK +TQ    AF +RRKT
Sbjct: 165 YYCRIIPVLEVPPTAFKPAPKVDSAVVRLEPYDTP-PFIAKSLKCLTQVCSMAFNQRRKT 223

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +R  L+ L     L + GI+T  RAEN+S+E++  I N + D
Sbjct: 224 IRNGLRDLLSIEQLQEIGIDTTKRAENISVEEYVNIANYVFD 265


>gi|304438548|ref|ZP_07398487.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368386|gb|EFM22072.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 292

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 148/273 (54%), Gaps = 14/273 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + ILS + +   K++GQNFL+D  +++ I +++      TV+EIG G G LTQ L   GA
Sbjct: 15  RHILSAFHLRASKWLGQNFLVDAGVVRAIVDAADLSRSDTVLEIGPGIGTLTQGLAESGA 74

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYN 128
           R ++ +E D++   +L +    + N + ++  D LK+D  +  N+ +  R  ++ANLPY 
Sbjct: 75  R-IVAVELDKKLPAVLAETLKGYDN-VTVVPGDILKLDILRILNLGAGERFKVVANLPYY 132

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L   +  +   P  E +  + QKEV  R+TA+  S  YG LS+   + T A ++ 
Sbjct: 133 ITTPILMALL--EQHLPI-ERMVTMVQKEVAVRMTARPGSKDYGALSIAVQYYTDAHIVM 189

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG- 245
           D+ P  F P+P+VTS VI       P  C  +     ++ + AFG+RRKTL  +L   G 
Sbjct: 190 DVPPRAFMPAPEVTSAVIACRMRETPSVCPTDEKLFFRLVRAAFGQRRKTLLNALTGAGL 249

Query: 246 ----GENLLHQAGIETNLRAENLSIEDFCRITN 274
                   L  AGI  +LR E LS+ DF R+++
Sbjct: 250 TKELCRAGLAAAGIAESLRGEQLSLADFARLSD 282


>gi|291397177|ref|XP_002714996.1| PREDICTED: Dimethyladenosine transferase 1, mitochondrial-like
           [Oryctolagus cuniculus]
          Length = 364

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 145/297 (48%), Gaps = 26/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTDAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F  S        P  +
Sbjct: 77  NVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKLEKAFPESLKRHWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   +S    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIVKWLEHVSCRDGPFVYGRTPMTLTFQKEVAERLAATTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++  +      +F I    F P P+V   V+ F P + P I    + ++K+ Q AF  R
Sbjct: 197 SIMAQYLCHVEHVFTIPGRAFVPKPEVDVGVVRFTPLIQPRIEQPFKLVEKVVQNAFQFR 256

Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279
           RK   + L  L          E LLH A +E  LR   LSI  F   C I   + D 
Sbjct: 257 RKYCYRGLGMLFPEAQRLESTERLLHLADVEPTLRPRQLSIAHFRSLCDIYRRMCDG 313


>gi|109072294|ref|XP_001094657.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 2
           [Macaca mulatta]
          Length = 345

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 145/297 (48%), Gaps = 26/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F+ S        P  +
Sbjct: 77  DVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279
           RK   + L  L  E         LL  A I+  LR   LSI  F   C +   + D 
Sbjct: 257 RKYCHRGLGMLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFRSLCEVYRRMCDE 313


>gi|122136705|sp|Q2PG46|TFB1M_MACFA RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|84578981|dbj|BAE72924.1| hypothetical protein [Macaca fascicularis]
          Length = 345

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 145/297 (48%), Gaps = 26/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F+ S        P  +
Sbjct: 77  DVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279
           RK   + L  L  E         LL  A I+  LR   LSI  F   C +   + D 
Sbjct: 257 RKYCHRGLGMLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFKSLCEVYRRMCDE 313


>gi|312128457|ref|YP_003993331.1| dimethyladenosine transferase [Caldicellulosiruptor hydrothermalis
           108]
 gi|311778476|gb|ADQ07962.1| dimethyladenosine transferase [Caldicellulosiruptor hydrothermalis
           108]
          Length = 282

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 155/270 (57%), Gaps = 13/270 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L ++L  Y + P K +GQNFL+D N+++KI   S + +G  VIEIGAGPG LT + L  
Sbjct: 9   ELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFSQT-EGKEVIEIGAGPGTLT-VYLAK 66

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A+KV+ +E D++   +LKD+  Q+ + ++I+  D L+++ +   N ++ + ++ NLPY 
Sbjct: 67  TAQKVVAVEIDKKILNVLKDVC-QNLSNVQIVNSDFLELNVKNLTN-NNKVYVVGNLPYY 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + +++LF       +    E  T++ QKEV +R+ A+  +  YG L+V   +  +    F
Sbjct: 125 VTSQILFKLFKERKY---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIEDYF 181

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR---LG 245
            +S +VF+P P+V S V+     +       +   KI    F  RRKT+  +L     + 
Sbjct: 182 YVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKKFFKIVHACFSTRRKTILNALSNQLDIA 241

Query: 246 GENL---LHQAGIETNLRAENLSIEDFCRI 272
            ++L   +H AG++ NLRAE+LS++++ R+
Sbjct: 242 KDDLKMIIHMAGLDENLRAEDLSLDNYIRL 271


>gi|307709722|ref|ZP_07646173.1| dimethyladenosine transferase [Streptococcus mitis SK564]
 gi|307619424|gb|EFN98549.1| dimethyladenosine transferase [Streptococcus mitis SK564]
          Length = 290

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVVVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADAL 285


>gi|225859740|ref|YP_002741250.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585]
 gi|254807886|sp|C1CA29|RSMA_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225720605|gb|ACO16459.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585]
          Length = 290

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N + PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|86516029|gb|ABC97665.1| KsgA [Shigella boydii]
          Length = 256

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 138/262 (52%), Gaps = 18/262 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83
           GQNFL D  ++  I  +     G  ++EIG G   LT+    +G R  +++VIE D+   
Sbjct: 3   GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLMVIELDRDLA 59

Query: 84  PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139
             L+     HP    +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S
Sbjct: 60  ARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P P
Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172

Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+ 
Sbjct: 173 KVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDP 232

Query: 258 NLRAENLSIEDFCRITNILTDN 279
            +RAEN+S+  +C++ N L +N
Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254


>gi|119899174|ref|YP_934387.1| dimethyladenosine transferase [Azoarcus sp. BH72]
 gi|119671587|emb|CAL95500.1| dimethyladenosine transferase [Azoarcus sp. BH72]
          Length = 265

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 144/257 (56%), Gaps = 15/257 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL D NI+++I ++    +G  ++EIG G G +T  L+  LG   V+ I++D 
Sbjct: 12  RKRFGQNFLSDPNIIRRIIDAIRPKEGDIMVEIGPGLGAMTTPLIERLGHLNVVEIDRDL 71

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               I +   +  P +L I + DALK DF    ++ SP+R++ NLPYNI T +LF+    
Sbjct: 72  ----IARLRETWTPEQLTIHEGDALKFDFG---SLGSPLRVVGNLPYNISTPILFHL--- 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
            T+    + +T + QKEV  R+ A+  +  YGRLSV+  +R +   +FD+ P  F P+PK
Sbjct: 122 STFADRVKDMTFMLQKEVVMRMVAEPGTEEYGRLSVMLQYRFRMARVFDVPPGAFRPAPK 181

Query: 201 VTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           V S+++   P L P          L +I   AFG+RRKTLR +LK   GE      G++ 
Sbjct: 182 VMSSIVRMAP-LPPEELGARDEALLGQIVTAAFGQRRKTLRNTLKDFLGEADFAALGLDP 240

Query: 258 NLRAENLSIEDFCRITN 274
            LR E LS+ +F  I N
Sbjct: 241 GLRGERLSVAEFVAIAN 257


>gi|116283278|gb|AAH05183.1| TFB1M protein [Homo sapiens]
          Length = 341

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F+ S        P  +
Sbjct: 77  DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L+ L  E         LL  A I+  LR   LSI  F  + ++
Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDV 306


>gi|329574115|gb|EGG55692.1| dimethyladenosine transferase [Enterococcus faecalis TX1467]
          Length = 295

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 152/289 (52%), Gaps = 24/289 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+  L + A
Sbjct: 14  KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++ANLP
Sbjct: 73  AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQAFQEKYPIKVVANLP 131

Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           Y I T ++ +++  S D        + ++ QKEV +RI A+  +  YG LS+   +  +A
Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242
           ++ F +   VF P P V S +I       P        +  K+T+ +F  RRKTL  +L 
Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
              G++          L +A I+++ R E LS+E+F R++N L  N+ +
Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDSSRRGETLSLEEFARLSNALEKNKPV 295


>gi|111658871|ref|ZP_01409492.1| hypothetical protein SpneT_02000042 [Streptococcus pneumoniae
           TIGR4]
 gi|148993153|ref|ZP_01822719.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68]
 gi|149021935|ref|ZP_01835922.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72]
 gi|168489990|ref|ZP_02714189.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195]
 gi|221232709|ref|YP_002511863.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC
           700669]
 gi|225861802|ref|YP_002743311.1| dimethyladenosine transferase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230181|ref|ZP_06963862.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255257|ref|ZP_06978843.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503755|ref|YP_003725695.1| dimethyladenosine transferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|27151593|sp|Q97NN5|RSMA_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807887|sp|B8ZNY9|RSMA_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807891|sp|C1CTN9|RSMA_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|147928127|gb|EDK79145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68]
 gi|147929973|gb|EDK80961.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72]
 gi|183571617|gb|EDT92145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195]
 gi|220675171|emb|CAR69755.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC
           700669]
 gi|225727338|gb|ACO23189.1| dimethyladenosine transferase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298239350|gb|ADI70481.1| dimethyladenosine transferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389149|gb|EGE87495.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04375]
 gi|332072066|gb|EGI82553.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17570]
          Length = 290

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|156415992|ref|NP_057104.2| dimethyladenosine transferase 1, mitochondrial [Homo sapiens]
 gi|74751555|sp|Q8WVM0|TFB1M_HUMAN RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=h-mtTFB; Short=h-mtTFB1; Short=hTFB1M;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|17389500|gb|AAH17788.1| Transcription factor B1, mitochondrial [Homo sapiens]
 gi|56204607|emb|CAI20506.1| transcription factor B1, mitochondrial [Homo sapiens]
 gi|119568075|gb|EAW47690.1| transcription factor B1, mitochondrial [Homo sapiens]
 gi|123982134|gb|ABM82896.1| transcription factor B1, mitochondrial [synthetic construct]
 gi|123996967|gb|ABM86085.1| transcription factor B1, mitochondrial [synthetic construct]
 gi|208967957|dbj|BAG73817.1| mitochondrial transcription factor B1 [synthetic construct]
 gi|311350098|gb|ADP92254.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350100|gb|ADP92255.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350102|gb|ADP92256.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350104|gb|ADP92257.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350106|gb|ADP92258.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350108|gb|ADP92259.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350110|gb|ADP92260.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350112|gb|ADP92261.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350114|gb|ADP92262.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350116|gb|ADP92263.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350118|gb|ADP92264.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350120|gb|ADP92265.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350122|gb|ADP92266.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350124|gb|ADP92267.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350126|gb|ADP92268.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350128|gb|ADP92269.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350130|gb|ADP92270.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350132|gb|ADP92271.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350134|gb|ADP92272.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350136|gb|ADP92273.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350138|gb|ADP92274.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350140|gb|ADP92275.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350142|gb|ADP92276.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350144|gb|ADP92277.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350146|gb|ADP92278.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350148|gb|ADP92279.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350150|gb|ADP92280.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350152|gb|ADP92281.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350154|gb|ADP92282.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350156|gb|ADP92283.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350158|gb|ADP92284.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350160|gb|ADP92285.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350162|gb|ADP92286.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350164|gb|ADP92287.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350166|gb|ADP92288.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350168|gb|ADP92289.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350170|gb|ADP92290.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350172|gb|ADP92291.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350174|gb|ADP92292.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350176|gb|ADP92293.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
          Length = 346

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F+ S        P  +
Sbjct: 77  DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L+ L  E         LL  A I+  LR   LSI  F  + ++
Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDV 306


>gi|120599973|ref|YP_964547.1| dimethyladenosine transferase [Shewanella sp. W3-18-1]
 gi|146292093|ref|YP_001182517.1| dimethyladenosine transferase [Shewanella putrefaciens CN-32]
 gi|166221703|sp|A4Y435|RSMA_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221705|sp|A1RMU8|RSMA_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120560066|gb|ABM25993.1| dimethyladenosine transferase [Shewanella sp. W3-18-1]
 gi|145563783|gb|ABP74718.1| dimethyladenosine transferase [Shewanella putrefaciens CN-32]
 gi|319425389|gb|ADV53463.1| dimethyladenosine transferase [Shewanella putrefaciens 200]
          Length = 268

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 148/286 (51%), Gaps = 27/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH-----LGHTA---RKRFGQNFLTDGNVINRIVGAIAPDNNHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFF------PILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           + +  +    + V+E D+         P+LKD       +L I Q DAL+ DF +     
Sbjct: 53  EPV-AMAVDNLTVVELDRDLVERLHKHPVLKD-------KLTIHQGDALQFDFSQLVVPG 104

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +++  NLPYNI T L+F+      +    E++  + QKEV  R++A      YGRL+V
Sbjct: 105 KKLKVFGNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTV 161

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ PH F P+PKV S V+  +P+   P PC  +  L+++   AF  RR
Sbjct: 162 MAQYFCQVVPVLEVPPHSFTPAPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRR 221

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTLR +LK +  +    Q GI+ + R E +S+E +  + N++ D +
Sbjct: 222 KTLRNNLKHMLSDAEFEQLGIDQSQRPEQISVEQYVAMANMICDRK 267


>gi|15903841|ref|NP_359391.1| dimethyladenosine transferase [Streptococcus pneumoniae R6]
 gi|116515767|ref|YP_817204.1| dimethyladenosine transferase [Streptococcus pneumoniae D39]
 gi|168492040|ref|ZP_02716183.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04]
 gi|33516933|sp|Q8DND3|RSMA_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122277950|sp|Q04II4|RSMA_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|15459484|gb|AAL00602.1| Dimethyladenosine transferase [Streptococcus pneumoniae R6]
 gi|116076343|gb|ABJ54063.1| dimethyladenosine transferase [Streptococcus pneumoniae D39]
 gi|183573705|gb|EDT94233.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04]
          Length = 290

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N + PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|312970146|ref|ZP_07784328.1| dimethyladenosine transferase [Escherichia coli 1827-70]
 gi|310337644|gb|EFQ02755.1| dimethyladenosine transferase [Escherichia coli 1827-70]
          Length = 273

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 145/285 (50%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +        ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKDQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|304438967|ref|ZP_07398890.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372633|gb|EFM26216.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 284

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 148/274 (54%), Gaps = 15/274 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   L  IL  +     K +GQNFL+D NI+++IA+ +G  +G  V+EIG G G LT+ L
Sbjct: 6   KPSVLVQILEEFGFRFTKSLGQNFLIDGNIVRRIADGAGVEEGSNVLEIGPGVGTLTEEL 65

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIAN 124
           L  GA  V+ +E D+    I K   + + +R++II DD L++D E+  + +  PI+++AN
Sbjct: 66  LLRGA-NVLAVEIDKNLVDIHK--KTLNYDRVKIIYDDFLRLDTEEIKSYLKGPIKVVAN 122

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY + T ++   + +D      ES+T++ QKEV  R  A+  +  YG LSV   +  + 
Sbjct: 123 LPYYVTTPIITKILESDLE---VESITVMVQKEVANRFAAEAGTKDYGSLSVFINYYAEP 179

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
             +F +   VF P P V S V+      +      + L ++ + AF KRRKT+  +L   
Sbjct: 180 KYLFSVPKSVFMPKPNVDSAVVKLEIKKHREDIDKDKLFRVVRGAFSKRRKTILNALSTY 239

Query: 245 GGENL--------LHQAGIETNLRAENLSIEDFC 270
           G +N+        L  +GI+ N R E LS E+F 
Sbjct: 240 GFKNITKTEIAEALKISGIDANRRGETLSPEEFM 273


>gi|152978411|ref|YP_001344040.1| dimethyladenosine transferase [Actinobacillus succinogenes 130Z]
 gi|150840134|gb|ABR74105.1| dimethyladenosine transferase [Actinobacillus succinogenes 130Z]
          Length = 288

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 148/272 (54%), Gaps = 25/272 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D N+++ I  +     G  ++EIG G G LT+ +     R + V+E D+ 
Sbjct: 13  RKRFGQNFLHDDNVIQSIVAAIYPQKGQFLVEIGPGLGALTEPVADRLER-LTVVELDRD 71

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NISS---PIRIIANLPYNIGTR 132
               L+     HP    +L +I+ DA++ DF K +   N++     +R+  NLPYNI T 
Sbjct: 72  LAERLR----HHPFLHQKLNVIEADAMQFDFGKLYADANLAEQGQKLRVFGNLPYNISTP 127

Query: 133 LLFNWISADTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           L+F+ +       F+   + +  + QKEV +R+ A  NS  YGRL+++T +  +   + +
Sbjct: 128 LIFHLLK------FYDKIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMTQYFCQVMPVLE 181

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P+PKV S V+  IPH   P P   L  L ++T +AF +RRKTLR +L  L   
Sbjct: 182 VPPTAFKPAPKVDSAVVRLIPHKTLPHPAKDLYWLNRVTSQAFNQRRKTLRNALSTLFSP 241

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             L   G++   RAENL+I D+ R+ + L DN
Sbjct: 242 ENLTALGVDLTARAENLTIADYVRLADWLYDN 273


>gi|182684919|ref|YP_001836666.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14]
 gi|303254092|ref|ZP_07340207.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455]
 gi|303260358|ref|ZP_07346328.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293]
 gi|303262506|ref|ZP_07348448.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292]
 gi|303265137|ref|ZP_07351050.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397]
 gi|303266001|ref|ZP_07351896.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457]
 gi|303268067|ref|ZP_07353868.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458]
 gi|226732631|sp|B2IM67|RSMA_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|182630253|gb|ACB91201.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14]
 gi|301802662|emb|CBW35428.1| dimethyladenosine transferase [Streptococcus pneumoniae INV200]
 gi|302598925|gb|EFL65956.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455]
 gi|302636406|gb|EFL66899.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292]
 gi|302638524|gb|EFL68989.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293]
 gi|302642427|gb|EFL72773.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458]
 gi|302644442|gb|EFL74694.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457]
 gi|302645354|gb|EFL75588.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397]
          Length = 290

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -QVMTFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|251778936|ref|ZP_04821856.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243083251|gb|EES49141.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 283

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/275 (35%), Positives = 144/275 (52%), Gaps = 12/275 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y     K +GQNFLLD ++L  I + +   +   +IEIG G G LT  LL   A
Sbjct: 9   KELVKKYNFRFSKSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLLQ-KA 67

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V  IE D    PIL+    ++ ++ E+I +DALKVDF +       ++++ANLPY + 
Sbjct: 68  KRVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYVT 126

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +  +     +ESLT++ QKEV ERI A+ N   YG LSVL  +     ++  +
Sbjct: 127 TPIIVKLLKENHK---FESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRKV 183

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG--G 246
           SP  F P PKV S VI      NP     +   L  I +  F  RRKTL  + K +G   
Sbjct: 184 SPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLSK 243

Query: 247 ENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
           E+L        I+   RAE LSIE+F  + + + D
Sbjct: 244 EDLQKAFDYCNIDPKRRAETLSIEEFAVLADSIHD 278


>gi|54307616|ref|YP_128636.1| dimethyladenosine transferase [Photobacterium profundum SS9]
 gi|46912039|emb|CAG18834.1| putative dimethyladenosine transferase [Photobacterium profundum
           SS9]
          Length = 286

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 13/267 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  S   L G  ++EIG G G LT+ +  L   K  VIE D+ 
Sbjct: 28  RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGALTEPVGRL-VDKFSVIELDRD 86

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+     HP+   +L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 87  LAKRLR----HHPDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMFHLF 142

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              T+    E +  + QKEV  R+ A      YGRL+V+  + ++ T + ++ P  F P+
Sbjct: 143 ---TFHEHVEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESFTPA 199

Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P+ + P PC  L+ L ++ +E F +RRKT+R   K L     L   G+ 
Sbjct: 200 PKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEDLGVN 259

Query: 257 TNLRAENLSIEDFCRITNILTDNQDIA 283
             LR EN++++ F ++ N L  N   A
Sbjct: 260 PGLRPENITLQQFVKMANWLDANHQNA 286


>gi|29375520|ref|NP_814674.1| dimethyladenosine transferase [Enterococcus faecalis V583]
 gi|227517856|ref|ZP_03947905.1| dimethyladenosine transferase [Enterococcus faecalis TX0104]
 gi|227555047|ref|ZP_03985094.1| dimethyladenosine transferase [Enterococcus faecalis HH22]
 gi|255974004|ref|ZP_05424590.1| dimethyladenosine transferase [Enterococcus faecalis T2]
 gi|256617805|ref|ZP_05474651.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200]
 gi|256761690|ref|ZP_05502270.1| dimethyladenosine transferase [Enterococcus faecalis T3]
 gi|256957208|ref|ZP_05561379.1| dimethyladenosine transferase [Enterococcus faecalis DS5]
 gi|257077820|ref|ZP_05572181.1| dimethyladenosine transferase [Enterococcus faecalis JH1]
 gi|257083847|ref|ZP_05578208.1| dimethyladenosine transferase [Enterococcus faecalis Fly1]
 gi|257086272|ref|ZP_05580633.1| dimethyladenosine transferase [Enterococcus faecalis D6]
 gi|257089346|ref|ZP_05583707.1| dimethyladenosine transferase [Enterococcus faecalis CH188]
 gi|257415498|ref|ZP_05592492.1| dimethyladenosine transferase [Enterococcus faecalis AR01/DG]
 gi|257418530|ref|ZP_05595524.1| dimethyladenosine transferase [Enterococcus faecalis T11]
 gi|293383814|ref|ZP_06629721.1| dimethyladenosine transferase [Enterococcus faecalis R712]
 gi|293388710|ref|ZP_06633203.1| dimethyladenosine transferase [Enterococcus faecalis S613]
 gi|294780523|ref|ZP_06745886.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1]
 gi|300859868|ref|ZP_07105956.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11]
 gi|307268011|ref|ZP_07549399.1| dimethyladenosine transferase [Enterococcus faecalis TX4248]
 gi|307275353|ref|ZP_07556496.1| dimethyladenosine transferase [Enterococcus faecalis TX2134]
 gi|307278369|ref|ZP_07559444.1| dimethyladenosine transferase [Enterococcus faecalis TX0860]
 gi|307286744|ref|ZP_07566830.1| dimethyladenosine transferase [Enterococcus faecalis TX0109]
 gi|312901521|ref|ZP_07760795.1| dimethyladenosine transferase [Enterococcus faecalis TX0470]
 gi|312904496|ref|ZP_07763655.1| dimethyladenosine transferase [Enterococcus faecalis TX0635]
 gi|312906970|ref|ZP_07765966.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512]
 gi|312978773|ref|ZP_07790500.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516]
 gi|33516925|sp|Q837A7|RSMA_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|29342980|gb|AAO80744.1| dimethyladenosine transferase [Enterococcus faecalis V583]
 gi|227074699|gb|EEI12662.1| dimethyladenosine transferase [Enterococcus faecalis TX0104]
 gi|227175834|gb|EEI56806.1| dimethyladenosine transferase [Enterococcus faecalis HH22]
 gi|255966876|gb|EET97498.1| dimethyladenosine transferase [Enterococcus faecalis T2]
 gi|256597332|gb|EEU16508.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200]
 gi|256682941|gb|EEU22636.1| dimethyladenosine transferase [Enterococcus faecalis T3]
 gi|256947704|gb|EEU64336.1| dimethyladenosine transferase [Enterococcus faecalis DS5]
 gi|256985850|gb|EEU73152.1| dimethyladenosine transferase [Enterococcus faecalis JH1]
 gi|256991877|gb|EEU79179.1| dimethyladenosine transferase [Enterococcus faecalis Fly1]
 gi|256994302|gb|EEU81604.1| dimethyladenosine transferase [Enterococcus faecalis D6]
 gi|256998158|gb|EEU84678.1| dimethyladenosine transferase [Enterococcus faecalis CH188]
 gi|257157326|gb|EEU87286.1| dimethyladenosine transferase [Enterococcus faecalis ARO1/DG]
 gi|257160358|gb|EEU90318.1| dimethyladenosine transferase [Enterococcus faecalis T11]
 gi|291078890|gb|EFE16254.1| dimethyladenosine transferase [Enterococcus faecalis R712]
 gi|291081867|gb|EFE18830.1| dimethyladenosine transferase [Enterococcus faecalis S613]
 gi|294452350|gb|EFG20789.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1]
 gi|300850686|gb|EFK78435.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11]
 gi|306502222|gb|EFM71506.1| dimethyladenosine transferase [Enterococcus faecalis TX0109]
 gi|306504875|gb|EFM74070.1| dimethyladenosine transferase [Enterococcus faecalis TX0860]
 gi|306507987|gb|EFM77114.1| dimethyladenosine transferase [Enterococcus faecalis TX2134]
 gi|306515652|gb|EFM84179.1| dimethyladenosine transferase [Enterococcus faecalis TX4248]
 gi|310626955|gb|EFQ10238.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512]
 gi|310632194|gb|EFQ15477.1| dimethyladenosine transferase [Enterococcus faecalis TX0635]
 gi|311288480|gb|EFQ67036.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516]
 gi|311291421|gb|EFQ69977.1| dimethyladenosine transferase [Enterococcus faecalis TX0470]
 gi|315027121|gb|EFT39053.1| dimethyladenosine transferase [Enterococcus faecalis TX2137]
 gi|315032435|gb|EFT44367.1| dimethyladenosine transferase [Enterococcus faecalis TX0017]
 gi|315034331|gb|EFT46263.1| dimethyladenosine transferase [Enterococcus faecalis TX0027]
 gi|315145777|gb|EFT89793.1| dimethyladenosine transferase [Enterococcus faecalis TX2141]
 gi|315148093|gb|EFT92109.1| dimethyladenosine transferase [Enterococcus faecalis TX4244]
 gi|315149696|gb|EFT93712.1| dimethyladenosine transferase [Enterococcus faecalis TX0012]
 gi|315165204|gb|EFU09221.1| dimethyladenosine transferase [Enterococcus faecalis TX1302]
 gi|315167928|gb|EFU11945.1| dimethyladenosine transferase [Enterococcus faecalis TX1341]
 gi|315172038|gb|EFU16055.1| dimethyladenosine transferase [Enterococcus faecalis TX1342]
 gi|315173444|gb|EFU17461.1| dimethyladenosine transferase [Enterococcus faecalis TX1346]
 gi|315574151|gb|EFU86342.1| dimethyladenosine transferase [Enterococcus faecalis TX0309B]
 gi|315577282|gb|EFU89473.1| dimethyladenosine transferase [Enterococcus faecalis TX0630]
 gi|315581706|gb|EFU93897.1| dimethyladenosine transferase [Enterococcus faecalis TX0309A]
 gi|327534516|gb|AEA93350.1| dimethyladenosine transferase [Enterococcus faecalis OG1RF]
          Length = 295

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 24/289 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+  L + A
Sbjct: 14  KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++ANLP
Sbjct: 73  AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131

Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           Y I T ++ +++  S D        + ++ QKEV +RI A+  +  YG LS+   +  +A
Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242
           ++ F +   VF P P V S +I       P        +  K+T+ +F  RRKTL  +L 
Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
              G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|149012426|ref|ZP_01833457.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75]
 gi|147763482|gb|EDK70418.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75]
          Length = 290

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N + PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFACLADAL 285


>gi|169834364|ref|YP_001695338.1| dimethyladenosine transferase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|194397125|ref|YP_002038567.1| dimethyladenosine transferase [Streptococcus pneumoniae G54]
 gi|237651002|ref|ZP_04525254.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI 1974]
 gi|237822560|ref|ZP_04598405.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI
           1974M2]
 gi|226732629|sp|B5E2H6|RSMA_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732630|sp|B1I8T7|RSMA_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|168996866|gb|ACA37478.1| dimethyladenosine transferase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|194356792|gb|ACF55240.1| dimethyladenosine transferase [Streptococcus pneumoniae G54]
          Length = 290

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N + PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|227532998|ref|ZP_03963047.1| dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227189399|gb|EEI69466.1| dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 302

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 141/277 (50%), Gaps = 18/277 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  +    +K +GQNFL D  IL+KI  ++       VIEIG G G LTQ L    A +
Sbjct: 20  ILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLAD-SAHQ 78

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128
           V+ +E D +  PIL +  + +PN + ++ +D LK D      + F+    ++++ANLPY 
Sbjct: 79  VVALEIDDRLLPILDETLADYPNAM-VVNEDVLKTDLGALVAEHFDGKHTLKVVANLPYY 137

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L + + A   P    S+T++ QKEV ER++A   S  YG LS+           F
Sbjct: 138 ITTPILLHLLRAQ-LP--LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATAF 194

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG 246
            +S H F P+P V S ++       P+    +  S  ++ + AF  RRKTL  +L  L G
Sbjct: 195 TVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLFG 254

Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +       + L  A I+   RAE LSI DF R+   L
Sbjct: 255 KTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRAL 291


>gi|224048037|ref|XP_002196390.1| PREDICTED: similar to Tfb1m protein [Taeniopygia guttata]
          Length = 351

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 144/289 (49%), Gaps = 23/289 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  I+  +++   K + QNFLLDL +  KI + +G L    V E+G GPG +T+ +L+ 
Sbjct: 17  TIGEIIKLFRLKALKQLSQNFLLDLRLTDKIVKQAGELKNAHVCEVGPGPGGITRSILSA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119
           G  ++++IEKD +F P L+ +S   P ++ I+  D L    EK F         +    I
Sbjct: 77  GVEQLLLIEKDARFIPGLQMLSEAAPGKVRIVHGDILTYKMEKAFPKHLKKSWDDEPPDI 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   +S    P  +    +TL FQKEVGER+TA   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSKRDGPFIYGRTQMTLTFQKEVGERLTANPGSSQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++          F I    F P P+V   V+HF P + P I    E ++K+ Q  F  R
Sbjct: 197 SIMAQHLCTVENCFIIPGQAFVPKPEVDVAVVHFTPLVQPKIEQPFELVEKVVQSVFQFR 256

Query: 234 RKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITN 274
           RK   + ++ L  EN        L+  A ++  LR   LS+  F  + N
Sbjct: 257 RKYCFRGIETLFPENGRLKRTEQLMMTANVDPTLRPFQLSMSQFRNLCN 305


>gi|304311710|ref|YP_003811308.1| Dimethyladenosine transferase [gamma proteobacterium HdN1]
 gi|301797443|emb|CBL45663.1| Dimethyladenosine transferase [gamma proteobacterium HdN1]
          Length = 279

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/259 (35%), Positives = 135/259 (52%), Gaps = 11/259 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D +++  I  +        ++EIG G G LT  LL     ++  IE D+ 
Sbjct: 14  KKRFGQNFLHDPHVIDSIVAAVNPQKSDNLVEIGPGQGALTGALLPY-LDQLQAIELDRD 72

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P L   S     +L I Q DAL+ DF    +    +R++ NLPYNI T LLF+ +   
Sbjct: 73  LIPYLL-ASFATTGKLHIHQADALRFDFGTLIHPDKKLRVVGNLPYNISTPLLFHLLD-- 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +    + +  + QKEV +R+ A  N   YGRL ++  +      +FD+ P  F P PKV
Sbjct: 130 -YASGIQDMHFMLQKEVVDRMAAGANEEAYGRLGIMIQYHCNVEALFDVPPEAFNPPPKV 188

Query: 202 TSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGENLLHQAGIET 257
           TS ++   P   H+ P    ++ L  +  EAF +RRKT+R +LK RL  E+ L   GI+ 
Sbjct: 189 TSAIVRLTPRSAHVTPA-LDVKLLGTLVTEAFTQRRKTVRNALKNRLSPED-LEACGIDL 246

Query: 258 NLRAENLSIEDFCRITNIL 276
            LR ENL++ D+  + N L
Sbjct: 247 KLRPENLTLNDYVSLANYL 265


>gi|226325806|ref|ZP_03801324.1| hypothetical protein COPCOM_03619 [Coprococcus comes ATCC 27758]
 gi|225205930|gb|EEG88284.1| hypothetical protein COPCOM_03619 [Coprococcus comes ATCC 27758]
          Length = 294

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 155/293 (52%), Gaps = 19/293 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  ++++ IL  Y    +K  GQNFL+D ++L KI  ++       V+EIG G G +
Sbjct: 5   TLGNPQNTIE-ILQKYNFNFQKKFGQNFLIDEHVLDKIIRAAEITKDDYVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD---FEKFFNISSP 118
           TQ  L   AR+V  +E D+   PIL+D   ++ N + II +D LKVD     K  N   P
Sbjct: 64  TQ-YLACAAREVTAVEIDRALIPILEDTLKEYDN-VSIINEDILKVDIAALAKEKNGGRP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +       ES+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---LESITVMVQKEVADRMQVGPGTKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKT 236
            +  +  ++ ++ P+ F P P V S VI    H   P+    E L  ++ + +F +RRKT
Sbjct: 179 QYYAEPYIVANVPPNCFMPRPAVGSAVIRLTRHQKPPVEVMDEKLMFRLIRASFNQRRKT 238

Query: 237 LRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           L   LK  G  NL        + + G  +++R E L +E+F R+TNI+ +  +
Sbjct: 239 LANGLKNSGELNLSKEVITAAIEKLGKGSSVRGEALDLEEFARLTNIIKEEME 291


>gi|224475635|ref|YP_002633241.1| dimethyladenosine transferase [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254807884|sp|B9DLD0|RSMA_STACT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|222420242|emb|CAL27056.1| ribosomal RNA adenine dimethylase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 296

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 154/281 (54%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y+   KK +GQNFL+D+NI++KI ++S   +   VIE+G G G+LT+ L    A
Sbjct: 13  RALLDKYQFDFKKSLGQNFLIDVNIIQKIIDASNIDERTGVIEVGPGMGSLTEQLAK-HA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           +KV+  E DQ+  P+L+D  S + N + +I +D LK D     +   +    I ++ANLP
Sbjct: 72  KKVVAFEIDQRLIPVLEDTLSDYDN-VTVINEDILKADVVEAVQTHLSDCDKIMVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +S  + P   +   ++ QKEVGER+ A+  +  YG LS++  + T+ + 
Sbjct: 131 YYITTPILLNLMSK-SLP--IDGYVVMMQKEVGERLNAEIGTKAYGSLSIVAQYYTETSK 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR---QSL 241
           +  +   VF P P V S V+  +    PI    +  +  K+T+ AF +RRKT+    QSL
Sbjct: 188 VLTVPKTVFMPPPNVDSIVVKLMKRQAPIVAVDDEDQFFKMTKAAFSQRRKTIANNYQSL 247

Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 K+   +  L   GI+   R E LSI++F  + N L
Sbjct: 248 FFDGKQKKYIIKTWLEDGGIDPRRRGETLSIKEFANLFNNL 288


>gi|190360597|ref|NP_001121947.1| dimethyladenosine transferase 1, mitochondrial [Sus scrofa]
 gi|186886356|gb|ACC93577.1| CGI-75 protein [Sus scrofa]
          Length = 340

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 144/290 (49%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  +K+   K + QNFLLDL +  KI   +GSL    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
           G  +++V+EKD +F P L+ +S   P +L I+  D L    E+ F  S        P  +
Sbjct: 77  GIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W+   +    PF      +TL FQKEV ER+ A K S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEVAERLIASKGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++  +      +  I    F P P+V   V+HF P   P I    + ++K+ Q AF  R
Sbjct: 197 SIMAQYLCGVQHVLTIPGRAFVPKPEVDVGVVHFTPLTQPKIEQPFKLVEKVVQNAFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L  L  E         LL  A ++  LR   LS+  F  + ++
Sbjct: 257 RKYCYRGLGMLFPEAQRMERTGKLLESADVDPTLRPTQLSVSHFQSLCDV 306


>gi|62900532|sp|Q6LV41|RSMA_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 271

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 13/267 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  S   L G  ++EIG G G LT+ +  L   K  VIE D+ 
Sbjct: 13  RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGALTEPVGRL-VDKFSVIELDRD 71

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+     HP+   +L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 72  LAKRLR----HHPDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMFHLF 127

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              T+    E +  + QKEV  R+ A      YGRL+V+  + ++ T + ++ P  F P+
Sbjct: 128 ---TFHEHVEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESFTPA 184

Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P+ + P PC  L+ L ++ +E F +RRKT+R   K L     L   G+ 
Sbjct: 185 PKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEDLGVN 244

Query: 257 TNLRAENLSIEDFCRITNILTDNQDIA 283
             LR EN++++ F ++ N L  N   A
Sbjct: 245 PGLRPENITLQQFVKMANWLDANHQNA 271


>gi|322391321|ref|ZP_08064791.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780]
 gi|321145747|gb|EFX41138.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780]
          Length = 290

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAKPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E L +E+F  + + L
Sbjct: 245 FGKTDEVKDKLTKALDQAGLSPSVRGEALGLEEFASLADAL 285


>gi|229828784|ref|ZP_04454853.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM
           14600]
 gi|229793378|gb|EEP29492.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM
           14600]
          Length = 290

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 151/282 (53%), Gaps = 18/282 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            +L  Y    +K  GQNFL+D +IL+ I +++       ++EIG G G LTQ L   G R
Sbjct: 12  AVLEKYGFSFQKKYGQNFLIDRHILEGIVDAAQISREDFILEIGPGIGTLTQYLCEAG-R 70

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128
           +V+ +E D++  PIL D  S + N +E+I  D LK+D        N S PI+++ANLPY 
Sbjct: 71  EVLAVELDRKLIPILADTLSSY-NNVEVICHDVLKLDLSGLIAEKNASRPIKLVANLPYY 129

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++ +   +       ES+T++ QKE+ +R+     S  YG LS+   +  K  +MF
Sbjct: 130 ITTPIIMSLFESHLP---LESITIMVQKELADRMQEGPGSKDYGALSLAVQYYAKPEVMF 186

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLK---- 242
            + P  F P PKV S VI    H + P+    E+ L ++ + +F +RRKTL   LK    
Sbjct: 187 QVPPSAFIPRPKVGSAVIRLTCHKSCPVEVSDEAYLFRVIRASFNQRRKTLTNGLKNAPD 246

Query: 243 -RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            RL  E +   + + G+   +R E L+++ F  ++N L + +
Sbjct: 247 IRLPKEQITEVIEEMGLPATVRGEMLTLKQFAELSNRLRERE 288


>gi|82775456|ref|YP_401803.1| dimethyladenosine transferase [Shigella dysenteriae Sd197]
 gi|119365843|sp|Q32K43|RSMA_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|81239604|gb|ABB60314.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Shigella
           dysenteriae Sd197]
          Length = 273

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 145/285 (50%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+ +  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLHVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKVYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|307128183|ref|YP_003880214.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B]
 gi|306485245|gb|ADM92114.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B]
          Length = 290

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|257081179|ref|ZP_05575540.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol]
 gi|256989209|gb|EEU76511.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol]
 gi|323480116|gb|ADX79555.1| dimethyladenosine transferase [Enterococcus faecalis 62]
          Length = 295

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 24/289 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+  L + A
Sbjct: 14  KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++ANLP
Sbjct: 73  AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131

Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           Y I T ++ +++  S D        + ++ QKEV +RI A+  +  YG LS+   +  +A
Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242
           ++ F +   VF P P V S +I       P        +  K+T+ +F  RRKTL  +L 
Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRRATPAMTVTNEKEFFKLTKASFQLRRKTLWNNLT 246

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
              G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|227528872|ref|ZP_03958921.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
 gi|227351195|gb|EEJ41486.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
          Length = 297

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 155/293 (52%), Gaps = 22/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           +T      + ++IL+ Y +  KK  GQNFL D  IL++I E++   D   VIEIG G G 
Sbjct: 4   LTQIGSRKTTRSILNEYGLHAKKGFGQNFLTDPAILQRIVEAAEVTDADNVIEIGPGIGA 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNI 115
           LT+ L    A +V+ +E DQ   P+L+   + + N + +I  D L+ +      ++F + 
Sbjct: 64  LTEKLAQ-AAGQVVAVEIDQDLIPVLEKTLAAYDN-VTVINQDILRANLPELIQQQFTDP 121

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           + PI+++ANLPY I + +L N +++   P  W S+T++ QKEV +R+TA+  +  YG L+
Sbjct: 122 TKPIKVVANLPYYITSPILMNLLAS---PVEWSSITVMMQKEVAQRLTAKPGTKQYGALT 178

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGK 232
           +   ++  A + F++S H F P+P V S ++       P+   P   + L    +  F  
Sbjct: 179 LAIEYQMDAEVAFNVSRHSFIPAPNVDSAIVVLKQRQQPLTTKPFDKQKLMGFIRGCFAH 238

Query: 233 RRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           RRK+L  +L+ + G++         +L +  I    R E L++  F  + N L
Sbjct: 239 RRKSLWNNLQSVIGKDANIKAKMTKVLEENEISPQFRPEKLTLAQFINLLNAL 291


>gi|148998515|ref|ZP_01825956.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70]
 gi|168576615|ref|ZP_02722481.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016]
 gi|307068593|ref|YP_003877559.1| dimethyladenosine transferase [Streptococcus pneumoniae AP200]
 gi|147755708|gb|EDK62754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70]
 gi|183577641|gb|EDT98169.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016]
 gi|306410130|gb|ADM85557.1| Dimethyladenosine transferase (rRNA methylation) [Streptococcus
           pneumoniae AP200]
 gi|332199299|gb|EGJ13377.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41317]
          Length = 290

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N + PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|255020167|ref|ZP_05292236.1| Dimethyladenosine transferase [Acidithiobacillus caldus ATCC 51756]
 gi|254970309|gb|EET27802.1| Dimethyladenosine transferase [Acidithiobacillus caldus ATCC 51756]
          Length = 282

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 144/263 (54%), Gaps = 16/263 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKD 79
           KK  GQNFL+   I+++I  + G      ++EIG G G LT+ LL   A      VIE D
Sbjct: 10  KKRFGQNFLVQPAIVQRIVAAVGPGSSDALVEIGPGRGALTRALLAALAPAQRLRVIELD 69

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWI 138
           +   PIL++++   P RLEI+  DALKVDF K  + +   +RI+ NLPYNI T LLF+ +
Sbjct: 70  RDLLPILRNLAP--PERLEILAADALKVDFLKIADTAGARLRIVGNLPYNISTPLLFHLL 127

Query: 139 SADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
                    E++T    + Q+EV ERI A+  S  YGRLSV+        M+F ++P  F
Sbjct: 128 GQ------AEAITDMHFMLQREVVERIVARPGSGTYGRLSVMLQAYCLVEMLFPVAPGNF 181

Query: 196 FPSPKVTSTVIHFIP-HLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S  +  +P H  PI    ++L  ++ + AF +RRKTL  + +         Q 
Sbjct: 182 HPVPKVDSAFLRLVPRHPTPIAPARQALFAEVVRLAFAQRRKTLANNFRSRLPAPAWEQL 241

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
            I+   RAE LS++DF R+T  L
Sbjct: 242 AIDPGRRAETLSVDDFFRLTEAL 264


>gi|197301323|ref|ZP_03166408.1| hypothetical protein RUMLAC_00054 [Ruminococcus lactaris ATCC
           29176]
 gi|197299641|gb|EDY34156.1| hypothetical protein RUMLAC_00054 [Ruminococcus lactaris ATCC
           29176]
          Length = 297

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 158/291 (54%), Gaps = 21/291 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  ++++ +L  Y  + +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 11  TLGNPQNTIE-VLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDVVLEIGPGIGTM 69

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ  L   A+KVI +E D+   PIL+D  S++ N + +I  D LKVD  K     N   P
Sbjct: 70  TQ-YLACAAKKVIAVEIDKALIPILEDTLSEYEN-VRVINHDVLKVDIAKLAEEENGGKP 127

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++      +   P  +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 128 IKVVANLPYYITTPIIMGLF--ENHVPI-KSITVMVQKEVADRMQVGPGTKDYGALSLAV 184

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235
            +  K  ++ ++ P+ F P PKV S VI    + NP P  ++  K   ++ + +F +RRK
Sbjct: 185 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERYENP-PVTVKDEKLMFRLIRASFNQRRK 243

Query: 236 TLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           TL   LK        +   E  +   G   ++R E L++E+F ++ ++L++
Sbjct: 244 TLANGLKNSPELDYTKEEIEAAIEALGRGASIRGEALTLEEFAKLADLLSE 294


>gi|86516099|gb|ABC97700.1| KsgA [Shigella flexneri]
          Length = 256

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 137/262 (52%), Gaps = 18/262 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83
           GQNFL D  ++  I  +     G  ++EIG G   LT+    +G R  ++ VIE D+   
Sbjct: 3   GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59

Query: 84  PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139
             L+     HP    +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S
Sbjct: 60  ARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P P
Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172

Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+ 
Sbjct: 173 KVDSAVVRLVPHATMPHPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDP 232

Query: 258 NLRAENLSIEDFCRITNILTDN 279
            +RAEN+S+  +C++ N L +N
Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254


>gi|301024796|ref|ZP_07188434.1| dimethyladenosine transferase [Escherichia coli MS 196-1]
 gi|299880286|gb|EFI88497.1| dimethyladenosine transferase [Escherichia coli MS 196-1]
          Length = 273

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 145/285 (50%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-IS 116
           +    +G R  ++ VIE D+     L+     HP    +L I Q DA+  +F +    + 
Sbjct: 53  E---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +      + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+R SL  L    +L    I+  +RAEN+S+  +C++ N L +N
Sbjct: 223 KTIRNSLGNLFSVEVLTGMRIDPAMRAENISVAQYCQMANYLAEN 267


>gi|313625508|gb|EFR95235.1| dimethyladenosine transferase [Listeria innocua FSL J1-023]
          Length = 295

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N + ++ +D LK D      E+F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSL 241
           A + F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNL 244

Query: 242 K------RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
                  +   E L   L+  GI+   R E L I +F +++N L D
Sbjct: 245 ASKFPALKPRKEELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290


>gi|295108631|emb|CBL22584.1| dimethyladenosine transferase [Ruminococcus obeum A2-162]
          Length = 290

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 151/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N  ++++ +L  Y  + +K  GQNFL+D ++L +I ++S       V+EIG G G +T
Sbjct: 6   LGNPKYTIE-VLQKYGFVFQKRFGQNFLIDTHVLDRIIQASEITKDDFVLEIGPGIGTMT 64

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    AR+V  +E D    PILKD   +  N + +I  D LK D  K     N   PI
Sbjct: 65  QYLAD-SAREVTAVEIDDALIPILKDTLKEWDN-VNVIHGDILKTDIRKIADEKNQGRPI 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +S+T++ QKEV +R+     S  YG LS+   
Sbjct: 123 KVVANLPYYITTPIIMGLFESHVP---VDSITVMVQKEVADRMQTGPGSKDYGALSLAVQ 179

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236
           +  K  ++ ++ P+ F P PKV S VI    H NP P   +  K   +I + +F +RRKT
Sbjct: 180 YYAKPEIVANVPPNCFMPRPKVGSAVIRLTRHQNP-PVTAKDEKLMFRIIRASFNQRRKT 238

Query: 237 LRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L   LK        +   E  + + G+  N+R E L++E F ++++I  D
Sbjct: 239 LANGLKNSQELNYTKEQVEAAITECGLPLNIRGEALTLEQFAKLSDIFFD 288


>gi|258510150|ref|YP_003183584.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476876|gb|ACV57195.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 284

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 146/280 (52%), Gaps = 17/280 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  +K +L  + +I KK  GQNFL+D  +L  I  +        V+E+G G G LT  L 
Sbjct: 6   AREVKELLRRHGVIAKKGYGQNFLVDARVLDGIVRAVAPDARTVVLEVGPGLGALTAALA 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRII-- 122
              A++V+ IEKD+   P+L ++ + H N  E++ +D LKVD        +    R++  
Sbjct: 66  ER-AKRVVAIEKDESLRPVLDEVLAPHGN-AEVVYEDCLKVDLRALLAPRLDEGDRLVFA 123

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +LF  + +D   P   ++ ++ Q+EV +R+ A+     YG LS+   +R 
Sbjct: 124 ANLPYYVTTPILFQVLESDV--PVSRAVVMV-QREVADRMVARPGGKDYGVLSIGVQYRG 180

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQS 240
           +   +F++ P  F P P V S V+       P     +  +L ++ + AFG RRKTL  +
Sbjct: 181 EVRRLFNVPPSAFLPQPGVESAVVEIDCDKRPAVRAADEAALFRVVRAAFGTRRKTLENA 240

Query: 241 LKRLGG--ENLLHQ----AGIETNLRAENLSIEDFCRITN 274
           L    G  + ++ Q    AGI+   RAE LS+ DF R+ +
Sbjct: 241 LAAGLGMPKEMVRQKVVAAGIDPGARAEQLSLADFVRLAD 280


>gi|86516027|gb|ABC97664.1| KsgA [Shigella boydii]
 gi|86516033|gb|ABC97667.1| KsgA [Shigella boydii]
 gi|86516035|gb|ABC97668.1| KsgA [Shigella boydii]
 gi|86516037|gb|ABC97669.1| KsgA [Shigella boydii]
 gi|86516039|gb|ABC97670.1| KsgA [Shigella boydii]
 gi|86516043|gb|ABC97672.1| KsgA [Shigella boydii]
 gi|86516047|gb|ABC97674.1| KsgA [Shigella boydii]
 gi|86516051|gb|ABC97676.1| KsgA [Shigella boydii]
 gi|86516055|gb|ABC97678.1| KsgA [Shigella boydii]
 gi|86516057|gb|ABC97679.1| KsgA [Shigella dysenteriae]
 gi|86516059|gb|ABC97680.1| KsgA [Shigella dysenteriae]
 gi|86516061|gb|ABC97681.1| KsgA [Shigella dysenteriae]
 gi|86516063|gb|ABC97682.1| KsgA [Shigella dysenteriae]
 gi|86516065|gb|ABC97683.1| KsgA [Shigella dysenteriae]
 gi|86516067|gb|ABC97684.1| KsgA [Shigella dysenteriae]
 gi|86516069|gb|ABC97685.1| KsgA [Shigella dysenteriae]
 gi|86516073|gb|ABC97687.1| KsgA [Shigella dysenteriae]
 gi|86516075|gb|ABC97688.1| KsgA [Shigella dysenteriae]
 gi|86516077|gb|ABC97689.1| KsgA [Shigella dysenteriae]
 gi|86516079|gb|ABC97690.1| KsgA [Shigella dysenteriae]
 gi|86516081|gb|ABC97691.1| KsgA [Shigella flexneri]
 gi|86516083|gb|ABC97692.1| KsgA [Shigella flexneri]
 gi|86516085|gb|ABC97693.1| KsgA [Shigella flexneri]
 gi|86516087|gb|ABC97694.1| KsgA [Shigella flexneri]
 gi|86516093|gb|ABC97697.1| KsgA [Shigella flexneri]
 gi|86516097|gb|ABC97699.1| KsgA [Shigella flexneri]
 gi|86516101|gb|ABC97701.1| KsgA [Escherichia coli]
 gi|86516103|gb|ABC97702.1| KsgA [Escherichia coli]
 gi|86516105|gb|ABC97703.1| KsgA [Escherichia coli]
          Length = 256

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 137/262 (52%), Gaps = 18/262 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83
           GQNFL D  ++  I  +     G  ++EIG G   LT+    +G R  ++ VIE D+   
Sbjct: 3   GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59

Query: 84  PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139
             L+     HP    +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S
Sbjct: 60  ARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P P
Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172

Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+ 
Sbjct: 173 KVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDP 232

Query: 258 NLRAENLSIEDFCRITNILTDN 279
            +RAEN+S+  +C++ N L +N
Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254


>gi|225869784|ref|YP_002745731.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047]
 gi|254807885|sp|C0M8P2|RSMA_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225699188|emb|CAW92442.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047]
          Length = 290

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K+IL  Y    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KSILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D++  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDERLVPILADTLRDFDN-VQVVNQDILKADLQTQLKQFSNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKI 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++++  F  RRKTL  +L   
Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRRDQPLIEVQDEDFFFRVSRVGFVHRRKTLWNNLVSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         E  L  AGI+ ++R E LSI+DF R+ + L
Sbjct: 245 FGKAEDTKARLEQGLALAGIKPSIRGEALSIQDFGRLADAL 285


>gi|170725376|ref|YP_001759402.1| dimethyladenosine transferase [Shewanella woodyi ATCC 51908]
 gi|226732625|sp|B1KGH9|RSMA_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|169810723|gb|ACA85307.1| dimethyladenosine transferase [Shewanella woodyi ATCC 51908]
          Length = 267

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 149/283 (52%), Gaps = 21/283 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D N++ +I  +    +   ++EIG G   LT
Sbjct: 1   MSNKVH-----LGH---TARKRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119
           + +      K+ V+E D+     L+    +HP   ++L+I Q DAL+ DF +       +
Sbjct: 53  EPVAN-AIDKLTVVELDKDLVARLQ----EHPTLKDKLDIHQGDALQFDFSQLVEEGRQM 107

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++  NLPYNI T L+F+      +    E++  + QKEV  R++A   +  YGRL+V+  
Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQ 164

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237
           +  +   + ++ P  F P PKV S V+  +P+ + P PC  ++ L+ +T  AF  RRKTL
Sbjct: 165 YHCQVMPVLEVPPGSFTPPPKVDSAVVRLVPYKVKPWPCKDVDQLRHLTTTAFNMRRKTL 224

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           R +LK +  +    + GI+  LR E +++E +  + N + D Q
Sbjct: 225 RNNLKHMISDEEFAELGIDATLRPEQITVEQYVAMANFVVDKQ 267


>gi|16799304|ref|NP_469572.1| dimethyladenosine transferase [Listeria innocua Clip11262]
 gi|27151588|sp|Q92F79|RSMA_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|16412646|emb|CAC95460.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
           innocua Clip11262]
          Length = 295

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N + ++ +D LK D      E+F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSL 241
           A + F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNL 244

Query: 242 K------RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
                  +   E L   L+  GI+   R E L I +F +++N L D
Sbjct: 245 ASKFPALKPRKEELIEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290


>gi|326772378|ref|ZP_08231663.1| dimethyladenosine transferase [Actinomyces viscosus C505]
 gi|326638511|gb|EGE39412.1| dimethyladenosine transferase [Actinomyces viscosus C505]
          Length = 367

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 140/279 (50%), Gaps = 16/279 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     I P K +GQNF+ D   +++I  ++G     TV+EIG G G+LT  LL  G
Sbjct: 73  VRGLCQALGIRPTKTLGQNFVHDAGTVRRIVRTAGVRPQDTVLEIGPGLGSLTLALLETG 132

Query: 70  ARKVIVIEKD---QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIA 123
           AR VI +E D    +  P+ + D       RL +IQ DAL +        + P   R++A
Sbjct: 133 AR-VIAVEIDPALARALPVTVADRMPHAAGRLTLIQADALSITGPDSLGEAEPPPTRLVA 191

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L   + A    P  ES+T++ Q EV +R+ A+  S  YG  SV   W  +
Sbjct: 192 NLPYNVAVPVLLTALEAL---PSLESVTVMVQAEVADRLAAEPGSRTYGVPSVKAAWYAE 248

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLK 242
           A     IS HVF+P P V S ++  +    P      E +  +   AF +RRKTLR++L 
Sbjct: 249 ARRTLTISRHVFWPVPNVDSALVELMRRRPPTTRATREQVFAVVDAAFAQRRKTLRKALA 308

Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +L G     E+ L  A I+   R E L I  F  +  +L
Sbjct: 309 KLAGGADAAESALRAADIDPTRRGETLDITAFAALAEVL 347


>gi|22122569|ref|NP_666186.1| dimethyladenosine transferase 1, mitochondrial [Mus musculus]
 gi|81878249|sp|Q8JZM0|TFB1M_MOUSE RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|21039484|gb|AAM33651.1|AF508971_1 transcription factor b1 [Mus musculus]
 gi|21410720|gb|AAH32930.1| Transcription factor B1, mitochondrial [Mus musculus]
 gi|148669697|gb|EDL01644.1| transcription factor B1, mitochondrial [Mus musculus]
          Length = 345

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 145/290 (50%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  + +   K + QNFLLDL +  KI   +GSL  + V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F  NI          +
Sbjct: 77  NVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPGNIRRQWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S  + RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISLKDGPFVYGRTKMTLTFQKEVAERLVATTGSKQHSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++  +      +F I    F P PKV   V+H  P + P I    + ++K+ Q AF  R
Sbjct: 197 SIMAQYLCNVEHLFTIPGKAFVPKPKVDVGVVHLTPLIEPKIKQPFKLVEKVVQNAFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L  L  E         LL  A I+  LR  +LS+  F  + ++
Sbjct: 257 RKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDV 306


>gi|168487122|ref|ZP_02711630.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00]
 gi|183569963|gb|EDT90491.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00]
          Length = 290

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N + PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFIHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|86148123|ref|ZP_01066423.1| dimethyladenosine transferase [Vibrio sp. MED222]
 gi|218708408|ref|YP_002416029.1| dimethyladenosine transferase [Vibrio splendidus LGP32]
 gi|254808268|sp|B7VIE2|RSMA_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|85834110|gb|EAQ52268.1| dimethyladenosine transferase [Vibrio sp. MED222]
 gi|218321427|emb|CAV17379.1| Dimethyladenosine transferase [Vibrio splendidus LGP32]
          Length = 271

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 143/265 (53%), Gaps = 13/265 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTVIELDRD 70

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP+   +L I + DA+K DFE+    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPDLAEKLTIYEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   +  YGRL+V+  +  K T + ++ P  F P 
Sbjct: 127 E---FHKDVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVTPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P+ + P P   L+ L ++ +E F +RRKT+R   K L  + +L + G+ 
Sbjct: 184 PKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKEVLEELGVN 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281
             +R ENL++E F  + N L D+ +
Sbjct: 244 PGMRPENLTLEQFVDMANWLHDSHN 268


>gi|329296587|ref|ZP_08253923.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Plautia stali symbiont]
          Length = 274

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 144/286 (50%), Gaps = 26/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       HY    +K  GQNFL D  I+  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHYA---RKRFGQNFLNDQYIIDSIVSAIHPQKGEAMVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116
           +    +G R   + V+E D+     L+     HP    +L I Q DA+  DF        
Sbjct: 53  E---PVGERLDALTVVELDRDLAARLQT----HPFLGPKLTIYQQDAMTFDFSALSKEQG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +    + +  + QKEV   + A   S  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNHLVACPGSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +P   P  P   +  L +IT EAFG+RR
Sbjct: 163 MAQYYCQVIPVLEVPPQSFTPPPKVDSAVVRLLPFTQPPYPVSDVRLLGRITTEAFGQRR 222

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTLR SL  L     L +  I+ +LRAEN+++  +C++ N L  +Q
Sbjct: 223 KTLRNSLGHLFTAGALDELNIDASLRAENVTVAQYCQLANWLGHHQ 268


>gi|291238518|ref|XP_002739171.1| PREDICTED: tfb1m protein-like [Saccoglossus kowalevskii]
          Length = 259

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 15/249 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  I+  Y +  +K + QNFLLD+N+  KI   +GSL+G  V E+G GPG +T+ +L  
Sbjct: 11  TIGDIIRMYGLRAEKQLSQNFLLDMNLTDKIVRHAGSLNGRYVCEVGPGPGGITRSILHS 70

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV--------DFEKFFNISSP-I 119
           GA+KVIVIEKDQ+F P L+ ++     RL +I  D +K         D  K +    P +
Sbjct: 71  GAKKVIVIEKDQRFMPSLELLAEASDGRLGLIHGDVMKYNMRNMFPNDLRKAWEDDPPDV 130

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFWE--SLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS+ + P  +    +TL FQKEV ER+ A    P   RL
Sbjct: 131 HIIGNLPFSVSTPLIIRWMEAISSHSGPFSYGRVQMTLTFQKEVAERLVAGVGDPQRSRL 190

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S+++    K    F I    F P P V   V+HF P ++P I    + ++K+ +  F  R
Sbjct: 191 SIMSQHLCKVKHAFTIPGTAFVPKPDVDVGVVHFTPLIDPLIQQPFKLVEKVVRCLFQFR 250

Query: 234 RKTLRQSLK 242
           RK  ++ ++
Sbjct: 251 RKYCKRGVE 259


>gi|145630268|ref|ZP_01786049.1| dimethyladenosine transferase [Haemophilus influenzae R3021]
 gi|144984003|gb|EDJ91440.1| dimethyladenosine transferase [Haemophilus influenzae R3021]
          Length = 287

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 153/288 (53%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NIS 116
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF++ +   N++
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFDELYTKENLA 107

Query: 117 SP---IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L+DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLSDN 272


>gi|90409115|ref|ZP_01217237.1| KsgA [Psychromonas sp. CNPT3]
 gi|90309789|gb|EAS37952.1| KsgA [Psychromonas sp. CNPT3]
          Length = 272

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 147/286 (51%), Gaps = 21/286 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNNK+H     L H     +K  GQNFL D  I+  I  +        ++EIG G G LT
Sbjct: 1   MNNKTH-----LGH---TARKRFGQNFLHDDYIIDSIVAAISPQYDDNIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPI 119
           + +     + + VIE D+     L D  ++HP    +L I Q DAL+ DF    +    +
Sbjct: 53  EPVAE-HVKTLHVIELDRD----LADRLAKHPTLSKKLNITQADALQFDFSLLASKEKQL 107

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R+  NLPYNI T L+F+      +    + +  + QKEV  R+ A  N   YGRL+V+  
Sbjct: 108 RVFGNLPYNISTPLMFHLFE---YADKIKDMHFMLQKEVVNRLCAGPNCKAYGRLTVMAQ 164

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237
           +  K   + ++ P  F P+PKV S V+   P+  P  +   L++L ++   AF +RRKT+
Sbjct: 165 YYCKIIPVLEVPPSAFIPAPKVDSAVVRLEPYDVPPFVAKSLKALNQVCSMAFNQRRKTI 224

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           R  L+ L     L    ++   RAEN+S+E++ R+ N +TD ++ A
Sbjct: 225 RNGLRELLSVEELQLLNVDHTKRAENVSVEEYVRLANYVTDRKEKA 270


>gi|145633499|ref|ZP_01789228.1| dimethyladenosine transferase [Haemophilus influenzae 3655]
 gi|144985868|gb|EDJ92476.1| dimethyladenosine transferase [Haemophilus influenzae 3655]
          Length = 287

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 150/288 (52%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQSNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117
           + +  L    + V+E D+     L +    HP    +L +I+ DA++ DF++ +   +  
Sbjct: 53  EPVGEL-VDHLTVVELDRD----LAERLHHHPFLHQKLTVIETDAMQFDFDELYTTENLA 107

Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAGPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|86516089|gb|ABC97695.1| KsgA [Shigella flexneri]
 gi|86516091|gb|ABC97696.1| KsgA [Shigella flexneri]
          Length = 256

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 137/262 (52%), Gaps = 18/262 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83
           GQNFL D  ++  I  +     G  ++EIG G   LT+    +G R  ++ VIE D+   
Sbjct: 3   GQNFLNDHFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59

Query: 84  PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139
             L+     HP    +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S
Sbjct: 60  ARLQ----THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P P
Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172

Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+ 
Sbjct: 173 KVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDP 232

Query: 258 NLRAENLSIEDFCRITNILTDN 279
            +RAEN+S+  +C++ N L +N
Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254


>gi|15603074|ref|NP_246146.1| dimethyladenosine transferase [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|27151601|sp|Q9CLL5|RSMA_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|12721563|gb|AAK03293.1| KsgA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 288

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D N++  I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDNNVIHGIVSAIYPQKDQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117
           + +  L    + V+E D+     L+     HP   +++ +I+ DA++ DF + +  ++  
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHHKITVIETDAMQFDFGQLYRDANLA 107

Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKKQKMRVFGNLPYNISTPLMFHLFK---YHDCIQDMHFMLQKEVVKRLCAGPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  +PH + P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPTAFKPAPKVDSAVVRLVPHKVLPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L   + L + GI+   RAENLSI D+ R+ N LTDN
Sbjct: 225 QRRKTLRNALSTLFSADQLTELGIDLTARAENLSIADYARLANWLTDN 272


>gi|256964244|ref|ZP_05568415.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704]
 gi|307271936|ref|ZP_07553204.1| dimethyladenosine transferase [Enterococcus faecalis TX0855]
 gi|256954740|gb|EEU71372.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704]
 gi|306511442|gb|EFM80444.1| dimethyladenosine transferase [Enterococcus faecalis TX0855]
          Length = 295

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 150/287 (52%), Gaps = 20/287 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+  L + A
Sbjct: 14  KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++ANLP
Sbjct: 73  AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ +++ +         + ++ QKEV +RI A+  +  YG LS+   +  +A++
Sbjct: 132 YYITTPIMMHFLESSLD---LAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEASV 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S +I       P        +  K+T+ +F  RRKTL  +L   
Sbjct: 189 AFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKVSFQLRRKTLWNNLTHF 248

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 249 YGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|225374814|ref|ZP_03752035.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM
           16841]
 gi|225213383|gb|EEG95737.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM
           16841]
          Length = 288

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 144/277 (51%), Gaps = 18/277 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  Y    +K  GQNFL+D ++L+KI E SG      V+EIG G G +TQ L    AR+
Sbjct: 13  VLQKYNFNFQKKFGQNFLIDTHVLEKIIEESGITKDDFVLEIGPGIGTMTQYLCE-NARE 71

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129
           V  +E D+   PIL D  S + N +E+I DD LKVD  K     N   PI+++ANLPY I
Sbjct: 72  VAAVEIDKNLIPILADTLSAYDN-VEVINDDILKVDINKLAEEKNGGKPIKVVANLPYYI 130

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     +       +S+T++ QKEV +R+     +  YG LS+   +  K  ++  
Sbjct: 131 TTPIIMGLFESHVP---IDSITIMVQKEVADRMQVGPGTKEYGALSLAVQYYAKPEIVAI 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGE 247
           + P+ F P P V S VI    H   P+    E L  KI + +F +RRKTL   L      
Sbjct: 188 VPPNCFMPRPNVGSAVIRLTRHKEVPVQVNDEKLMFKIIRASFNQRRKTLANGLNNAPDI 247

Query: 248 NL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
           +L        + + G+   +R E L+++ F +++NI+
Sbjct: 248 HLSKEVIQESIEELGVPVTIRGEALTLQQFAQLSNII 284


>gi|300812073|ref|ZP_07092521.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496912|gb|EFK31986.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 296

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 146/283 (51%), Gaps = 20/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            I++ Y +  KK +GQNFL+DL+ ++ I  ++G   G  V+E+G G G+LT+ LL  G  
Sbjct: 15  AIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGG- 73

Query: 72  KVIVIEKDQQFFPILKD-----ISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIRI 121
           KV   E DQ    IL +     +  Q    R ++I  D LK DF      FF++  P+++
Sbjct: 74  KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLGKPVKV 133

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++FN + +      + SLTL+ QKEV ER+ AQ  S  YG LS+    +
Sbjct: 134 VANLPYYITTPIIFNLLESSLD---FTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQ 190

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240
               +  ++    F P PKV S V+   P   P      +   ++ +  F +RRKTL  +
Sbjct: 191 MSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANN 250

Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK L       E LL    ++   R E L+I DF RI+  + +
Sbjct: 251 LKTLLPDKEDREKLLDDLDLDPRQRPEQLAIGDFIRISQAIAE 293


>gi|153811992|ref|ZP_01964660.1| hypothetical protein RUMOBE_02385 [Ruminococcus obeum ATCC 29174]
 gi|149831891|gb|EDM86977.1| hypothetical protein RUMOBE_02385 [Ruminococcus obeum ATCC 29174]
          Length = 290

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 148/290 (51%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N  ++++ +L  Y  + +K  GQNFL+D  +L +I E+S       V+EIG G G +T
Sbjct: 6   LGNPKYTIE-VLQKYGFVFQKRFGQNFLIDTRVLDRIIEASEITKDDFVLEIGPGIGTMT 64

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    AR+V  +E D    PIL+D   +  N + +I  D LK D  K     N   PI
Sbjct: 65  QYLAD-AAREVTAVEIDDALIPILQDTLKEWDN-VSVIHGDILKTDIRKIADEKNQGRPI 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +S+T++ QKEV +R+     S  YG LS+   
Sbjct: 123 KVVANLPYYITTPIIMGLFESHVP---VDSITVMVQKEVADRMQTGPGSKDYGALSLAVQ 179

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236
           +  K  ++ ++ P+ F P PKV S VI    H NP P   +  K   +I + +F +RRKT
Sbjct: 180 YYAKPEIVANVPPNCFMPRPKVGSAVIRLTRHQNP-PVQAKDEKLMFRIIRASFNQRRKT 238

Query: 237 LRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L   LK        +   E  + + G+  N+R E L++E F  + +I  D
Sbjct: 239 LANGLKNSQELQFTKEQVEQAITECGLPLNIRGEALTLEQFAALADIFVD 288


>gi|315163005|gb|EFU07022.1| dimethyladenosine transferase [Enterococcus faecalis TX0645]
          Length = 295

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 24/289 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+  L + A
Sbjct: 14  KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++ANLP
Sbjct: 73  AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131

Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           Y I T ++ +++  S D        + ++ QKEV +RI A+  +  YG LS+   +  +A
Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242
           ++ F +   VF P P V S +I       P        +  K+T+ +F  RRKTL  +L 
Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTCRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
              G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|84393695|ref|ZP_00992445.1| dimethyladenosine transferase [Vibrio splendidus 12B01]
 gi|84375694|gb|EAP92591.1| dimethyladenosine transferase [Vibrio splendidus 12B01]
          Length = 271

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 141/262 (53%), Gaps = 13/262 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTVIELDRD 70

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP+   +L I + DA+K DFE+    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPDLADKLTIYEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   +  YGRL+V+  +  K T + ++ P  F P 
Sbjct: 127 E---FHKDVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVTPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P+ + P P   L+ L ++ +E F +RRKT+R   K L  + +L + G+ 
Sbjct: 184 PKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKEVLEELGVN 243

Query: 257 TNLRAENLSIEDFCRITNILTD 278
             +R ENL++E F  + N L D
Sbjct: 244 PGMRPENLTLEQFVDMANWLYD 265


>gi|294139568|ref|YP_003555546.1| dimethyladenosine transferase [Shewanella violacea DSS12]
 gi|293326037|dbj|BAJ00768.1| dimethyladenosine transferase [Shewanella violacea DSS12]
          Length = 272

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 149/283 (52%), Gaps = 21/283 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     KK  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH-----LGH---TAKKRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119
           + +      K+ V+E D+     L     +HP   ++LEI Q DAL  DF +       +
Sbjct: 53  EPVAE-SIDKLTVVELDKDLVARL----HEHPTLKHKLEIHQGDALNFDFSQLIEEGKEL 107

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++  NLPYNI T L+F+      +    + +  + QKEV  R++A   +  YGRL+V+  
Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAEHIKHMHFMLQKEVVLRLSATPGTKAYGRLTVMAQ 164

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTL 237
           +  +   + ++ P  F P+PKV S V+  +P+   P PC  +E L+++T  AF  RRKTL
Sbjct: 165 YHCQIMPVLEVPPECFTPAPKVNSAVVRLVPYKQKPWPCSDVEFLRRMTTTAFSMRRKTL 224

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           R +LK +  +       I+++LR E +++E +  + N+L D +
Sbjct: 225 RNNLKHMITDEEFLALNIDSSLRPEQITVEQYVSMANMLLDKK 267


>gi|315656046|ref|ZP_07908944.1| dimethyladenosine transferase [Mobiluncus curtisii ATCC 51333]
 gi|315490110|gb|EFU79737.1| dimethyladenosine transferase [Mobiluncus curtisii ATCC 51333]
          Length = 309

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 147/297 (49%), Gaps = 34/297 (11%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  +  + +  ++ P K  GQNF+ D   +++IA ++G   G TV+EIG G G+LT  LL
Sbjct: 6   ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNI----SSPI 119
            LG  KVI IE DQ+    L    +QH      L ++  DAL++  E    I    ++P 
Sbjct: 66  ELGC-KVIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLEIPAGWAAPH 124

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R++ANLPYN+ T LL +++      P  ES  ++ Q EV +R  A      YG  SV   
Sbjct: 125 RLVANLPYNVATPLLLHFLEV---LPNLESALVMVQAEVADRWVAGVADDAYGAPSVKLA 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF--------------IPHLNPIPCCLESLKK- 224
           W  +    F +  +VF+P P V STV+ F              +   N     +E+L++ 
Sbjct: 182 WWGRTKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLREDLKLDLENLTDEAIETLRQE 241

Query: 225 ---ITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRIT 273
                  AF +RRKTLRQSL    G       LL  AGI   LRAE LS+ DF +I 
Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPDAAAVLLESAGIIPGLRAERLSVTDFTKIA 298


>gi|90411944|ref|ZP_01219952.1| dimethyladenosine transferase [Photobacterium profundum 3TCK]
 gi|90327202|gb|EAS43574.1| dimethyladenosine transferase [Photobacterium profundum 3TCK]
          Length = 271

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/267 (34%), Positives = 141/267 (52%), Gaps = 13/267 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  VIE D+ 
Sbjct: 13  RKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGRL-VDKFSVIELDRD 71

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+     HP+   +L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 72  LAKRLR----HHPDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMFHLF 127

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              T+    E +  + QKEV  R+ A      YGRL+V+  + ++ T + ++ P  F P+
Sbjct: 128 ---TFHEHVEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESFTPA 184

Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P+ + P PC  L+ L ++ +E F +RRKT+R   K L     L   G+ 
Sbjct: 185 PKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEHLGVN 244

Query: 257 TNLRAENLSIEDFCRITNILTDNQDIA 283
             LR EN++++ F ++ N L  N   A
Sbjct: 245 PGLRPENITLQQFVKMANWLDANHQNA 271


>gi|195977405|ref|YP_002122649.1| dimethyladenosine transferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225869264|ref|YP_002745212.1| dimethyladenosine transferase [Streptococcus equi subsp.
           zooepidemicus]
 gi|226732627|sp|B4U0U9|RSMA_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|259494258|sp|C0MF36|RSMA_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|195974110|gb|ACG61636.1| dimethyladenosine transferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225702540|emb|CAX00496.1| dimethyladenosine transferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 290

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D++  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDERLVPILADTLRDFDN-VQVVNQDILKADLQTQLKQFSNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKI 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++++  F  RRKTL  +L   
Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRRDQPLIEVQDEDFFFRVSRVGFVHRRKTLWNNLVSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         E  L  AGI+ ++R E LSI+DF R+ + L
Sbjct: 245 FGKAEDTKARLEQGLALAGIKPSIRGEALSIQDFGRLADAL 285


>gi|153956353|ref|YP_001397118.1| dimethyladenosine transferase [Clostridium kluyveri DSM 555]
 gi|219856668|ref|YP_002473790.1| hypothetical protein CKR_3325 [Clostridium kluyveri NBRC 12016]
 gi|146349211|gb|EDK35747.1| KsgA [Clostridium kluyveri DSM 555]
 gi|219570392|dbj|BAH08376.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 281

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 147/274 (53%), Gaps = 14/274 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN   S K I+  Y     K +GQNFL+D ++L+ I E +       VIEIG G G LT
Sbjct: 1   MNN--LSTKEIVEKYNFRFSKNLGQNFLIDNSVLQDILEGTDINKNDFVIEIGPGVGTLT 58

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A+KV  IE D     ILK+    +PN  E+I  D LK +F +     S I+I+
Sbjct: 59  KELLK-RAKKVCAIELDSDLIAILKEELKHYPN-FELIHKDVLKTNFNEIIKDESSIKIV 116

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++   ++       +++LT++ QKEVGER+ ++ N   YG LS+L  +  
Sbjct: 117 ANLPYYITTPIISKILNNKYN---FKTLTIMIQKEVGERMISEPNCKRYGALSLLVQYYC 173

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQS 240
              ++  +SP+ F PSPKV S VI      NP +    E L  +I + +F  RRKTL  +
Sbjct: 174 DVEVLRKVSPYAFIPSPKVESIVIKLTKLNNPRVKIKSEDLFFRIIRCSFNMRRKTLWNA 233

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDF 269
           LK L       E    ++ I+   R E LSIE+F
Sbjct: 234 LKALKLSREYIEKAFDKSRIDPKRRGETLSIEEF 267


>gi|327488831|gb|EGF20630.1| dimethyladenosine transferase [Streptococcus sanguinis SK1058]
          Length = 290

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 151/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKVD  ++     N   
Sbjct: 61  TEFLAE-SAAEVMAFEIDDRLVPILADTLRGFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKSYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     KI++ +F  RRK
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKISKASFVHRRK 235

Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G++          L +A +  ++R E LS+E+F R+ + L
Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERADLSPSVRGEALSLEEFARLADAL 285


>gi|253681083|ref|ZP_04861886.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873]
 gi|253562932|gb|EES92378.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873]
          Length = 281

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 146/273 (53%), Gaps = 15/273 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+  Y     K +GQNFL D  +L  I   S   +   VIEIG G G LT+ LL   A
Sbjct: 7   KEIVQKYNFKFTKSLGQNFLTDQTVLDDIVIGSEVCEEDFVIEIGPGVGTLTKELLK-KA 65

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +KV  +E D    PIL++   +  N  ++I  DALK++F++       ++++ANLPY + 
Sbjct: 66  KKVCAVELDSNLIPILQE-ELKEFNNFQLIHKDALKINFKELIGDEKSVKVVANLPYYVT 124

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +        ++SLT++ QKEV ERI ++ N   YG LS+L  +    T++  +
Sbjct: 125 TPIIARLLKEGYN---FKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTTIIRKV 181

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG- 246
            P  F P PKV S +I  +  LN     ++  +   KI +++F  RRKTLR ++K LG  
Sbjct: 182 PPTCFIPQPKVDSIIIR-LDRLNEPRVKVQDKELFFKIVRQSFNMRRKTLRNAIKSLGFI 240

Query: 247 -----ENLLHQAGIETNLRAENLSIEDFCRITN 274
                E + + A I+   R E L++E+F ++ +
Sbjct: 241 SSDKIEKVFNDANIDPRRRGETLTLEEFGKLAD 273


>gi|323340527|ref|ZP_08080782.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644]
 gi|323092071|gb|EFZ34688.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644]
          Length = 296

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 149/281 (53%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y +  KK +GQNFL DLNILKKI  ++   +   VIEIG G G LT+ L    A
Sbjct: 15  RAIMETYGLTFKKSLGQNFLTDLNILKKIVAAAEVGEEDDVIEIGPGIGALTEQLAK-SA 73

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
            +V+ +E D +  P+L +  S + N ++I++ D LK D ++     F+    I+++ANLP
Sbjct: 74  HQVMALEIDSRLIPVLSETLSPYDN-VKIVEQDVLKADLKELIAQNFDGRHKIKLVANLP 132

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ + +  D     +E++ ++ QKEV +R+ AQ  +  YG LSV   +   A +
Sbjct: 133 YYITTPIVMHLLEVDVD---FETIVVMMQKEVADRLAAQPGTKDYGSLSVAVQYEMDAKI 189

Query: 187 MFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P PKV S +I          +P      KK+ +  F  RRK+L  +L+ L
Sbjct: 190 AFIVPKTVFMPQPKVDSAIIALNRKDEKPDVPVDEPFFKKMVKGIFLHRRKSLWNNLQGL 249

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         E+ L  A IE ++RAE LSI    R+ + L
Sbjct: 250 YGKDPSTREKLEHALKNAEIEKSVRAERLSISQMVRLADNL 290


>gi|293573156|ref|ZP_06684093.1| dimethyladenosine transferase [Enterococcus faecium E980]
 gi|291606794|gb|EFF36179.1| dimethyladenosine transferase [Enterococcus faecium E980]
          Length = 294

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 155/285 (54%), Gaps = 20/285 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L  + A
Sbjct: 14  KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQL-AMHA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E D +  P+L D    + N + II  D LK D      + F+   P++++ANLP
Sbjct: 73  KQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFHEELPLKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ +++ +D      + L ++ QKEV +RI+A+  +  YG LS+   +  +A++
Sbjct: 132 YYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S ++       P     +  +  ++T+ AF +RRKTL  +L+  
Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            G++          L  AGI+   R E LS+++F  ++N +++N+
Sbjct: 249 YGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293


>gi|227552435|ref|ZP_03982484.1| dimethyladenosine transferase [Enterococcus faecium TX1330]
 gi|257888325|ref|ZP_05667978.1| dimethyladenosine transferase [Enterococcus faecium 1,141,733]
 gi|257896785|ref|ZP_05676438.1| dimethyladenosine transferase [Enterococcus faecium Com12]
 gi|293378583|ref|ZP_06624746.1| dimethyladenosine transferase [Enterococcus faecium PC4.1]
 gi|227178447|gb|EEI59419.1| dimethyladenosine transferase [Enterococcus faecium TX1330]
 gi|257824379|gb|EEV51311.1| dimethyladenosine transferase [Enterococcus faecium 1,141,733]
 gi|257833350|gb|EEV59771.1| dimethyladenosine transferase [Enterococcus faecium Com12]
 gi|292642912|gb|EFF61059.1| dimethyladenosine transferase [Enterococcus faecium PC4.1]
          Length = 294

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 155/285 (54%), Gaps = 20/285 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L  + A
Sbjct: 14  KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQL-AMHA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E D +  P+L D    + N + II  D LK D      + F+   P++++ANLP
Sbjct: 73  KQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFHEELPLKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ +++ +D      + L ++ QKEV +RI+A+  +  YG LS+   +  +A++
Sbjct: 132 YYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S ++       P     +  +  ++T+ AF +RRKTL  +L+  
Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            G++          L  AGI+   R E LS+++F  ++N +++N+
Sbjct: 249 YGKDDQTKTWLSKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293


>gi|68249146|ref|YP_248258.1| dimethyladenosine transferase [Haemophilus influenzae 86-028NP]
 gi|145635368|ref|ZP_01791070.1| dimethyladenosine transferase [Haemophilus influenzae PittAA]
 gi|81336447|sp|Q4QMZ9|RSMA_HAEI8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|68057345|gb|AAX87598.1| dimethyladenosine transferase [Haemophilus influenzae 86-028NP]
 gi|145267374|gb|EDK07376.1| dimethyladenosine transferase [Haemophilus influenzae PittAA]
          Length = 287

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 150/288 (52%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF++ +   +  
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFDELYTTENLA 107

Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAGPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|327468444|gb|EGF13929.1| dimethyladenosine transferase [Streptococcus sanguinis SK330]
          Length = 290

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKVD  ++     N   
Sbjct: 61  TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKSYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RRK
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRRK 235

Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G++          L +A +  ++R E LS+E+F R+ + L
Sbjct: 236 TLWNNLTSCFGKSEETKDKLTAALERAELSPSVRGEALSLEEFARLADAL 285


>gi|167465157|ref|ZP_02330246.1| dimethyladenosine transferase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381202|ref|ZP_08055205.1| dimethyladenosine 16S ribosomal RNA transferase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154778|gb|EFX47049.1| dimethyladenosine 16S ribosomal RNA transferase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 301

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 29/297 (9%)

Query: 3   MNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53
           MN+ SHS          K I+  +    KK +GQNFL+DLNIL++I  ++        +E
Sbjct: 1   MNSHSHSSRDVATPRKTKEIIQKHGFSFKKSLGQNFLMDLNILRQIVSAAELTSQKGALE 60

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF- 112
           IG G G LTQ L    A KV+ +E DQ+  PIL +    +P   E+I  D LK+D ++  
Sbjct: 61  IGPGIGALTQQLAK-QAGKVVAVEIDQRLLPILSETLEGYPA--EVIHGDVLKMDLKELL 117

Query: 113 ---FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
              F   S + ++ANLPY + T ++   +  +  P   E++ ++ QKEV ER+ A   S 
Sbjct: 118 RDKFQQVSAVTVVANLPYYVTTPIIMKLLE-NKLP--LENIVVMIQKEVAERMAAVPGSK 174

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQ 227
            YG LS+   +  +A ++  +   VF P P V S VI   +    P+    E+   ++ Q
Sbjct: 175 DYGSLSIAVQYYCEARVISIVPRTVFVPQPNVDSAVIKLALRKEPPVRVSDEAFFFEVIQ 234

Query: 228 EAFGKRRKTLRQSL--KRLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            +F +RRKT+  +L  +    EN      LL +AGI+ + R E LSIE+F R++ IL
Sbjct: 235 ASFAQRRKTIYNNLAARYCSKENKKEMEALLREAGIQPSRRGETLSIEEFARLSEIL 291


>gi|262281831|ref|ZP_06059600.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA]
 gi|262262285|gb|EEY80982.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA]
          Length = 290

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 148/290 (51%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKVD  ++     N   
Sbjct: 61  TEFLAE-NAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     K+T+ +F  RRK
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVTKASFVHRRK 235

Query: 236 TLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G         E  L +A +  N+R E L +  F R+++ L
Sbjct: 236 TLWNNLTSYFGKSEEVKTKLERALEKADLAANVRGEALDLAAFARLSDAL 285


>gi|325688925|gb|EGD30933.1| dimethyladenosine transferase [Streptococcus sanguinis SK115]
          Length = 290

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 152/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D  S   N + ++  D LKVD  ++     N   
Sbjct: 61  TEFLAE-NAAEVMAFEIDDRLVPILADTLSDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ Q+EV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKSYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RRK
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRRK 235

Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G++          L +A +  ++R E LS+E+F R+ + L
Sbjct: 236 TLWNNLTSYFGKSEETKGKLTAALERANLSPSVRGEALSLEEFARLADAL 285


>gi|257899761|ref|ZP_05679414.1| dimethyladenosine transferase [Enterococcus faecium Com15]
 gi|257837673|gb|EEV62747.1| dimethyladenosine transferase [Enterococcus faecium Com15]
          Length = 294

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 154/285 (54%), Gaps = 20/285 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L  + A
Sbjct: 14  KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQL-AMHA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E D +  P+L D    + N + II  D LK D      + F    P++++ANLP
Sbjct: 73  KQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFQEELPLKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ +++ +D      + L ++ QKEV +RI+A+  +  YG LS+   +  +A++
Sbjct: 132 YYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S ++       P     +  +  ++T+ AF +RRKTL  +L+  
Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            G++          L  AGI+   R E LS+++F  ++N +++N+
Sbjct: 249 YGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293


>gi|325579206|ref|ZP_08149162.1| dimethyladenosine transferase [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159441|gb|EGC71575.1| dimethyladenosine transferase [Haemophilus parainfluenzae ATCC
           33392]
          Length = 287

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 151/288 (52%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVSAIHPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NIS 116
           + +  L    + V+E D+     L+     HP    RL +I+ DA++ DF + +   N++
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQRLTVIETDAMQFDFGELYTKENLA 107

Query: 117 SP---IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAGPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFSAEDLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|319946185|ref|ZP_08020425.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
 gi|319747567|gb|EFV99820.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
          Length = 291

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 147/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++  D LKVD  ++     N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPELPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQKEVADRISAEPNTKAYGALSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KR 243
            F +   VF P+P V S ++  +    P     +      +++ +F  RRKTL  +L  R
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREEPAVTVKDEDFFFTVSKASFVHRRKTLWNNLTSR 244

Query: 244 LGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  +  AG++ ++R E LS+EDF R+ + L D
Sbjct: 245 FGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLADGLLD 287


>gi|314937300|ref|ZP_07844642.1| dimethyladenosine transferase [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654596|gb|EFS18346.1| dimethyladenosine transferase [Staphylococcus hominis subsp.
           hominis C80]
          Length = 296

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 151/278 (54%), Gaps = 22/278 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L+ +    KK +GQNFL+D+NI+ KI ++S       +IE+G G G+LT+ L    A
Sbjct: 13  KELLNQFDFNFKKSLGQNFLVDVNIIHKIIDASHIDKSTGIIEVGPGMGSLTEQLAK-SA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEK----FFNISSPIRIIANL 125
           +KV+  E DQ+  P+LK+  + HP + + II +D LK D       + N    I ++ANL
Sbjct: 72  KKVLSFEIDQRLIPVLKE--TLHPYDNVTIINEDILKADIATAVNMYLNDCDKIMVVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L N +  D   P  +   ++ QKEVGER+ A+  +  YG LS++T + T+ +
Sbjct: 130 PYYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYTETS 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243
            +  +   VF P P V S V+  +    P+      ++  K+ + AF +RRKT+  + + 
Sbjct: 187 KVLTVPKSVFMPPPNVDSIVVKLMQREKPLVSVDDEQAFFKLAKAAFAQRRKTINNNYQN 246

Query: 244 LGGE-----NLLHQ----AGIETNLRAENLSIEDFCRI 272
              +     + +HQ    A I+   R E LSI+DF R+
Sbjct: 247 FFKDGKKYKSQIHQWLENANIDPKRRGETLSIQDFARL 284


>gi|153854785|ref|ZP_01996019.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814]
 gi|149752692|gb|EDM62623.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814]
          Length = 292

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 153/289 (52%), Gaps = 19/289 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  ++++ +L  Y    +K  GQNFL+D ++L KI +S+   +   V+EIG G G +
Sbjct: 5   TLGNPQNTIE-VLQKYNFSFQKKFGQNFLIDTHVLDKIIQSANITEDDMVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ  L   A KVI +E D+   PIL+D  S + N + +I +D LK+D +K     N   P
Sbjct: 64  TQ-YLAQAAGKVIAVEIDKNLIPILEDTLSGYDN-VRVINEDVLKLDLKKLADEENNGKP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPY I T ++      +      ES+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 VKVVANLPYYITTPIIMGLFENEVP---VESITVMVQKEVADRMQTGPGNKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKT 236
            +     ++ ++ P+ F P PKV S VI    H   P+    E L   I + +F +RRKT
Sbjct: 179 QYYADPYIVANVPPNCFMPRPKVGSAVIRLTCHQEKPVQVQDEKLMFNIIRASFNQRRKT 238

Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L   LK            E  +   G   ++R E L++E+F R++++L+
Sbjct: 239 LANGLKNAATLDFTKEEVEAAIDALGKGASVRGETLTLEEFARLSDLLS 287


>gi|291542930|emb|CBL16040.1| dimethyladenosine transferase [Ruminococcus bromii L2-63]
          Length = 284

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 153/282 (54%), Gaps = 18/282 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++K ILS +     K +GQNFL++ ++  ++AE SG+ +G+ VIE+G G G LT  L +L
Sbjct: 9   TIKDILSRHGFTFSKSLGQNFLINPSVCPRMAELSGAGEGVGVIEVGPGIGVLTTELCSL 68

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANL 125
            A KV+ +E D++  P+L++  S++ N ++++ DD LK+D  K          + + ANL
Sbjct: 69  -ADKVVAVELDKRLLPVLEETLSEYDN-VKVVNDDILKIDLHKLIEEEFQGMDVVVCANL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + ++   +  D  P    ++T++ QKE  +RI A+  S   G ++V   +  +  
Sbjct: 127 PYYITSPVIMKLLE-DRLP--ICAITVMVQKEAAQRICAEVGSRASGAVTVSVNYYAEPE 183

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK 242
           M+F +S   F P+PKV S V+       P P  ++  K   K+ + AF +RRKTL  SL 
Sbjct: 184 MLFSVSAGSFMPAPKVDSAVLRLNILKEP-PVKVDDEKKFFKVVKAAFSQRRKTLSNSLA 242

Query: 243 ------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 +     +L  + +  N RAE L +EDF  I N L D
Sbjct: 243 SGLSLPKAEVNAILDNSSVPLNARAEQLKLEDFANIANNLGD 284


>gi|119775951|ref|YP_928691.1| dimethyladenosine transferase [Shewanella amazonensis SB2B]
 gi|166221699|sp|A1S9G5|RSMA_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119768451|gb|ABM01022.1| dimethyladenosine transferase [Shewanella amazonensis SB2B]
          Length = 267

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 21/283 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D NI+ +I  +    D   ++EIG G   LT
Sbjct: 1   MSNKVH-----LGHTA---RKRFGQNFLTDGNIINRIVGAISPDDDHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPI 119
           + +  +G + + VIE D+     LK     HP   ++L I Q DA+K DF +       +
Sbjct: 53  EPV-AMGIKNLTVIELDRDLAERLK----VHPTLKDKLTIHQGDAMKFDFSQLVEPERKL 107

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++  NLPYNI T L+F+      +    E++  + QKEV  R++A   +  YG+L+V+  
Sbjct: 108 KVFGNLPYNISTPLMFHLFE---FAEHIENMHFMLQKEVVLRLSASPGTKAYGKLTVMAQ 164

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTL 237
           +  +   + ++ P  F P PKV S V+  +P+   P PC  +E L+K+   AF  RRKTL
Sbjct: 165 YYCQVVPVLEVPPGCFTPPPKVDSAVVRLVPYAEKPWPCHDVEMLRKVCNTAFNMRRKTL 224

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           R +LK L  +      GI+  LR E++S+  +  + N L + +
Sbjct: 225 RNNLKPLLQDADFDVLGIDAGLRPEDISVAQYVAMANYLCEKR 267


>gi|322387082|ref|ZP_08060693.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
 gi|321142069|gb|EFX37563.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
          Length = 290

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEVDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N + PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAKPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEIKDKLTKALDQAGLVPSVRGEALSLAEFASLADAL 285


>gi|289577364|ref|YP_003475991.1| dimethyladenosine transferase [Thermoanaerobacter italicus Ab9]
 gi|289527077|gb|ADD01429.1| dimethyladenosine transferase [Thermoanaerobacter italicus Ab9]
          Length = 272

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 146/267 (54%), Gaps = 16/267 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNF+ D NIL KI  +SG +    V+EIG G G LT+ L     +KVI  E D++
Sbjct: 9   KKKWGQNFMFDKNILTKIVTASGVIPEDFVLEIGTGLGTLTEELAK-RVKKVISFEIDRE 67

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWI 138
            + + K+  + + N + II +D +K D  K  N      P +++ANLPY I + ++   +
Sbjct: 68  LYAVAKEKLNIYDNVI-IINEDIMKADLNKIANEYFEGKPFKVVANLPYYITSPIIMMLL 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                  F + +T+L QKEV ERI A   +  YG L+V   ++ K  M+F++ P VF P 
Sbjct: 127 DCK----FVKEITVLVQKEVAERICALPGTKDYGILTVFANFKAKPKMLFNLPPTVFVPP 182

Query: 199 PKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGI 255
           PKV S+++      +P+      E    + + AFG+RRK L  +LK LG  + ++ +A  
Sbjct: 183 PKVDSSLVKLEVLDDPLVEVKDEELFSNVVKAAFGQRRKVLSNALKTLGFPKEIIDKAFT 242

Query: 256 ETNL----RAENLSIEDFCRITNILTD 278
            +NL    R E LSIE+F  + N++ D
Sbjct: 243 LSNLSPQRRGETLSIEEFAVLANVIYD 269


>gi|260102234|ref|ZP_05752471.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075]
 gi|260083975|gb|EEW68095.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075]
          Length = 291

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 153/281 (54%), Gaps = 24/281 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D N +  I E++    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  QVIINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPILKDI------SSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120
            KV   E D     IL++        +   +R +++  D LK +F++    FF++S PI+
Sbjct: 74  -KVFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  S  YG L++    
Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237
                +  +++ + F P PKV S+V+   P  N     +E+ K    + +  F +RRKTL
Sbjct: 190 EMDVKVALEVNHNSFMPRPKVDSSVVVLTPLKN--KPEIENRKHFVWVVKMCFSQRRKTL 247

Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
             +LK L       E L+ + G++  +R ENL+IE F  I+
Sbjct: 248 NNNLKTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEIS 288


>gi|191639502|ref|YP_001988668.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Lactobacillus
           casei BL23]
 gi|190713804|emb|CAQ67810.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Lactobacillus
           casei BL23]
          Length = 302

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 140/277 (50%), Gaps = 18/277 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  +    +K +GQNFL D  IL+KI  ++       VIEIG G G LTQ L    A +
Sbjct: 20  ILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLAD-SAHQ 78

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128
           V+ +E D +  PIL +  + +PN   ++ +D LK D      + F+    ++++ANLPY 
Sbjct: 79  VVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPYY 137

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L + + A   P    S+T++ QKEV ER++A   S  YG LS+           F
Sbjct: 138 ITTPILLHLLRAQ-LP--LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATAF 194

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG 246
            +S H F P+P V S ++       P+    +  S  ++ + AF  RRKTL  +L  L G
Sbjct: 195 TVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLFG 254

Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +       + L  A I+   RAE LSI DF R+   L
Sbjct: 255 KTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRAL 291


>gi|86516023|gb|ABC97662.1| KsgA [Shigella boydii]
 gi|86516025|gb|ABC97663.1| KsgA [Shigella boydii]
 gi|86516041|gb|ABC97671.1| KsgA [Shigella boydii]
 gi|86516045|gb|ABC97673.1| KsgA [Shigella boydii]
 gi|86516049|gb|ABC97675.1| KsgA [Shigella boydii]
 gi|86516053|gb|ABC97677.1| KsgA [Shigella boydii]
 gi|86516071|gb|ABC97686.1| KsgA [Shigella dysenteriae]
          Length = 256

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 137/262 (52%), Gaps = 18/262 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83
           GQNFL D  ++  I  +     G  ++EIG G   LT+    +G R  ++ VIE D+   
Sbjct: 3   GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59

Query: 84  PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139
             L+     HP    +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S
Sbjct: 60  ARLQT----HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P P
Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172

Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   G++ 
Sbjct: 173 KVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGLDP 232

Query: 258 NLRAENLSIEDFCRITNILTDN 279
            +RAEN+S+  +C++ N L +N
Sbjct: 233 AMRAENISVAQYCQMANYLAEN 254


>gi|307707668|ref|ZP_07644148.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261]
 gi|307616280|gb|EFN95473.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261]
          Length = 290

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKV+     + F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVNLAQHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADAL 285


>gi|228476220|ref|ZP_04060923.1| dimethyladenosine transferase [Staphylococcus hominis SK119]
 gi|228269705|gb|EEK11204.1| dimethyladenosine transferase [Staphylococcus hominis SK119]
          Length = 296

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 151/278 (54%), Gaps = 22/278 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L+ +    KK +GQNFL+D+NI+ KI ++S       +IE+G G G+LT+ L    A
Sbjct: 13  KELLNQFDFNFKKSLGQNFLVDVNIIHKIIDASHIDKSTGIIEVGPGMGSLTEQLAK-SA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEK----FFNISSPIRIIANL 125
           +KV+  E DQ+  P+LK+  + HP + + II +D LK D       + N    I ++ANL
Sbjct: 72  KKVLSFEIDQRLIPVLKE--TLHPYDNVTIINEDILKADIATAVNMYLNDCDKIMVVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L N +  D   P  +   ++ QKEVGER+ A+  +  YG LS++T + T+ +
Sbjct: 130 PYYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYTETS 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243
            +  +   VF P P V S V+  +    P+      ++  K+ + AF +RRKT+  + + 
Sbjct: 187 KVLTVPKSVFMPPPNVDSIVVKLMQREKPLVSVDDEQAFFKLAKAAFAQRRKTINNNYQN 246

Query: 244 LGGE-----NLLHQ----AGIETNLRAENLSIEDFCRI 272
              +     + +HQ    A I+   R E LSI+DF R+
Sbjct: 247 FFKDGKKYKSKIHQWLENADIDPKRRGETLSIQDFARL 284


>gi|239630423|ref|ZP_04673454.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301067575|ref|YP_003789598.1| dimethyladenosine transferase (rRNA methylation) [Lactobacillus
           casei str. Zhang]
 gi|239526706|gb|EEQ65707.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300439982|gb|ADK19748.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
           casei str. Zhang]
 gi|327383599|gb|AEA55075.1| Dimethyladenosine transferase [Lactobacillus casei LC2W]
 gi|327386791|gb|AEA58265.1| Dimethyladenosine transferase [Lactobacillus casei BD-II]
          Length = 298

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 140/277 (50%), Gaps = 18/277 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  +    +K +GQNFL D  IL+KI  ++       VIEIG G G LTQ L    A +
Sbjct: 16  ILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLAD-SAHQ 74

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128
           V+ +E D +  PIL +  + +PN   ++ +D LK D      + F+    ++++ANLPY 
Sbjct: 75  VVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPYY 133

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L + + A   P    S+T++ QKEV ER++A   S  YG LS+           F
Sbjct: 134 ITTPILLHLLRAQ-LP--LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATAF 190

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG 246
            +S H F P+P V S ++       P+    +  S  ++ + AF  RRKTL  +L  L G
Sbjct: 191 TVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLFG 250

Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +       + L  A I+   RAE LSI DF R+   L
Sbjct: 251 KTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRAL 287


>gi|94676936|ref|YP_588992.1| dimethyladenosine transferase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|122064282|sp|Q1LSS2|RSMA_BAUCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94220086|gb|ABF14245.1| dimethyladenosine transferase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 271

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 141/264 (53%), Gaps = 16/264 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K +GQ+FL D NI++ I      L    ++EIG G G LT+ +     + + VIE D  
Sbjct: 12  RKCLGQHFLHDQNIIESIVAVIHPLPSQALVEIGPGLGALTKYVAKY-VKTITVIELDHN 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNW 137
               L +    HP   ++L I+  D +KV+F      +S P+RI  NLPYNI   L+FN 
Sbjct: 71  LVAYLAN----HPILQHKLNILSQDVMKVNFSDLAKKLSQPLRIFGNLPYNISIALMFNL 126

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                       +  + QKEV  R+ A+ N+ +YG+LSV+     +  ++ D+ P  F P
Sbjct: 127 FRHIHM---IRDMHFMLQKEVVSRLLAKPNNKNYGKLSVIAQHYCQIDLVLDVPPESFRP 183

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            P+V S V+  +P++ P P  ++ + K   +T  AF +RRKT+R SL+ L     L   G
Sbjct: 184 VPQVDSAVVRLVPYVIP-PYPVKDINKLYLLTSLAFQQRRKTIRNSLRNLFSVEQLLTQG 242

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           I + LRAENLS+E +C + + L +
Sbjct: 243 IISTLRAENLSVEQYCCLASTLAE 266


>gi|319901130|ref|YP_004160858.1| dimethyladenosine transferase [Bacteroides helcogenes P 36-108]
 gi|319416161|gb|ADV43272.1| dimethyladenosine transferase [Bacteroides helcogenes P 36-108]
          Length = 271

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/257 (36%), Positives = 138/257 (53%), Gaps = 8/257 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +  GI V+E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDACPGIPVLEVGPGMGVLTQFLVR-KERPVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q      II+DD LK++ ++ FN  +P  +  N PYNI +++ F  +
Sbjct: 63  DFESVAYLRETYPQLEEH--IIEDDFLKMNLQRLFN-GNPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LS+L     K   +F +  HVF P 
Sbjct: 120 ENKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K++ +  F +RRKTLR S+K + G++         
Sbjct: 177 PKVKSAVIRMTRNETQHLGCNEQLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236

Query: 258 NLRAENLSIEDFCRITN 274
           N R E LS+++F  +TN
Sbjct: 237 NKRPEQLSVQEFINLTN 253


>gi|319940004|ref|ZP_08014358.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
           anginosus 1_2_62CV]
 gi|319810718|gb|EFW07045.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
           anginosus 1_2_62CV]
          Length = 291

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 151/283 (53%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++   + + VIEIG G G LT+ L    A
Sbjct: 10  RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D++  PIL D      N + ++ +D LK D +    +F N S PI+++ANLP
Sbjct: 69  AEVMTFEIDERLVPILADTLRDFDN-VCVVNEDILKSDLQVRIKEFANPSLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ Q+EV +RI+AQ NS  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNSKSYGNLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPAVGVKDEAFFFKVSKASFTHRRKTLWNNLTSY 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E+ L  A +  ++R E L++++F R+ + L D
Sbjct: 245 FGKSNEVKTKLESALDNAELSPSVRGEALNLQEFARLADSLYD 287


>gi|187933536|ref|YP_001884370.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund
           17B]
 gi|187721689|gb|ACD22910.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund
           17B]
          Length = 283

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 141/271 (52%), Gaps = 12/271 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y     K +GQNFLLD ++L  I + +   +   +IEIG G G LT  LL   A
Sbjct: 9   KELVKKYNFRFSKSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLLQ-KA 67

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           + V  IE D    PIL+    ++ ++ E+I +DALKVDF +       ++++ANLPY + 
Sbjct: 68  KMVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYVT 126

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +  +     +ESLT++ QKEV ERI A+ N   YG LSVL  +     ++  +
Sbjct: 127 TPIIVKLLKENHK---FESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRKV 183

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG--G 246
           SP  F P PKV S VI      NP     +   L  I +  F  RRKTL  + K +G   
Sbjct: 184 SPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLSK 243

Query: 247 ENL---LHQAGIETNLRAENLSIEDFCRITN 274
           E+L        I+   RAE LSIE+F  + +
Sbjct: 244 EDLQKAFDSCNIDPKRRAETLSIEEFAALAD 274


>gi|222528417|ref|YP_002572299.1| dimethyladenosine transferase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455264|gb|ACM59526.1| dimethyladenosine transferase [Caldicellulosiruptor bescii DSM
           6725]
          Length = 291

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 150/270 (55%), Gaps = 13/270 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L ++L  Y + P K +GQNFL+D N+++KI   S + +G  VIEIGAGPG LT + L  
Sbjct: 18  ELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFSQT-EGKEVIEIGAGPGTLT-VYLAK 75

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A+KV+ +E D++   +LKD+    PN ++I+  D L+++ +   N  + + ++ NLPY 
Sbjct: 76  TAQKVVAVEIDKKILNVLKDVCQNLPN-VQIVNSDFLELNVKNLTN-GNKVYVVGNLPYY 133

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + +++LF            E  T++ QKEV +R+ A+  +  YG L+V   +  +    F
Sbjct: 134 VTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIEDYF 190

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR---LG 245
            +S +VF+P P+V S V+     +       +   KI    F  RRKT+  +L     + 
Sbjct: 191 YVSKNVFYPKPEVDSAVLRARFKVEEPNVDEKKFFKIVHACFSTRRKTILNALSNQLDIA 250

Query: 246 GENL---LHQAGIETNLRAENLSIEDFCRI 272
            + L   +  AG++ NLRAE+LS++D+ R+
Sbjct: 251 KDELKKIILMAGLDENLRAEDLSLDDYIRL 280


>gi|157149731|ref|YP_001449514.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189028823|sp|A8AUQ4|RSMA_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157074525|gb|ABV09208.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 290

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 145/281 (51%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++  D LKVD  ++     N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+T+ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREQPAVEVQDEKFFFKVTKASFVHRRKTLWNNLTSY 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         EN L +A +  N+R E L +  F R+++ L
Sbjct: 245 FGKSEEVKEKLENALAKANLVANVRGEALDLVAFARLSDAL 285


>gi|297543652|ref|YP_003675954.1| dimethyladenosine transferase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841427|gb|ADH59943.1| dimethyladenosine transferase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 273

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 146/267 (54%), Gaps = 16/267 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNF+ D NIL KI  +SG +    V+EIG G G LT+ L     +KVI  E D++
Sbjct: 9   KKKWGQNFMFDKNILTKIVTASGVIPEDFVLEIGTGLGTLTEELAK-RVKKVISFEIDRE 67

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWI 138
            + + K+  + + N + II +D +K D  K  N      P +++ANLPY I + ++   +
Sbjct: 68  LYAVAKEKLNIYDNVI-IINEDIMKADLNKIANEYFEGKPFKVVANLPYYITSPIIMMLL 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                  F + +T+L QKEV ERI A   +  YG L+V   ++ K  M+F++ P VF P 
Sbjct: 127 DCK----FVKEITVLVQKEVAERICALPGTKDYGILTVFANFKAKPKMLFNLPPTVFVPP 182

Query: 199 PKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGI 255
           PKV S+++      +P+      E    + + AFG+RRK L  +LK LG  + ++ +A  
Sbjct: 183 PKVDSSLVKLEILDDPLVEVKDEELFSNVVKAAFGQRRKVLSNALKTLGFPKEIIDKAFT 242

Query: 256 ETNL----RAENLSIEDFCRITNILTD 278
            +NL    R E LSIE+F  + N++ D
Sbjct: 243 LSNLSPQRRGETLSIEEFAVLANVIYD 269


>gi|4929619|gb|AAD34070.1|AF151833_1 CGI-75 protein [Homo sapiens]
          Length = 346

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 143/290 (49%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+   ++     + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLLRLQAANELSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F+ S        P  +
Sbjct: 77  DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L+ L  E         LL  A I+  LR   LSI  F  + ++
Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDV 306


>gi|312867557|ref|ZP_07727765.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405]
 gi|311096963|gb|EFQ55199.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405]
          Length = 291

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 146/279 (52%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126
            +V+  E D +  PIL D   +  N + ++  D LKVD  ++     N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLREFDN-VTVVNQDILKVDLNQYIAEFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KR 243
            F +   VF P+P V S ++  +    P     +      +++ +F  RRKTL  +L  R
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREEPAVAVKDEDFFFSVSKASFVHRRKTLWNNLTSR 244

Query: 244 LGG--------ENLLHQAGIETNLRAENLSIEDFCRITN 274
            G         E  +  AG++ ++R E LS+EDF R+ +
Sbjct: 245 FGKTEEVKAKLEAGIQAAGLKPSVRGEALSLEDFARLAD 283


>gi|205372007|ref|ZP_03224825.1| dimethyladenosine transferase [Bacillus coahuilensis m4-4]
          Length = 294

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 28/285 (9%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL+D NIL+ I E++G       +E+G G G LT+ L    A
Sbjct: 11  KEILQKHGFSFKKSLGQNFLIDPNILRNITEAAGLTKEFGAVEVGPGIGALTEHL-ARSA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           +KV+  E DQ+  PIL+D  S + N +EII  D LK D E      F+   P+ ++ANLP
Sbjct: 70  KKVVSFEIDQRLVPILEDTLSPYDN-VEIILQDFLKADVESVLREQFSPDDPLMLVANLP 128

Query: 127 YNIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           Y I T    R+L   +  D        + ++ QKEV +RI+A+  +  YG LS+   + T
Sbjct: 129 YYITTPIIMRVLLERLPID-------RIVVMLQKEVADRISAKPGTKEYGSLSIAIQYYT 181

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240
           +A  +  +   VF P P V S VI       PI    +      +T+ +F +RRKT+  +
Sbjct: 182 EAETVMIVPKTVFMPQPNVDSAVIRLTKRKEPIARVEDEDFFFTVTRASFAQRRKTILNN 241

Query: 241 LKR--LGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           L    + G+N        L   G++   R E LSIE+F  ++N L
Sbjct: 242 LSSQLVEGKNKKDLLVQCLESVGVDPTRRGETLSIEEFAELSNAL 286


>gi|329903504|ref|ZP_08273520.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548327|gb|EGF33015.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480]
          Length = 259

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 139/260 (53%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K + +K  GQNFL D  +L+ I ++        ++EIG G G +T++LL     ++ V+E
Sbjct: 2   KHVARKRFGQNFLTDKQVLQDIIQTIAPARADAMVEIGPGLGAMTRLLLDD-LDQLHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFN 136
            D+    +++   +  P +L I   DAL+ DF          +R++ NLPYNI + LLF+
Sbjct: 61  LDRDL--VVRLQKTFDPKKLLIHSGDALQFDFGTLPVPAGQKLRVVGNLPYNISSPLLFH 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
             S   +    +    + QKEV ER+ A      YGRLSV+  WR   ++ F + P  F 
Sbjct: 119 LAS---FTALVQDQHFMLQKEVVERMVAAPGGKSYGRLSVMLQWRYAMSLRFIVPPTAFD 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S ++  IP  +P+PC  ++L+ +  +AF  RRK LR  L  +  EN L  AG++
Sbjct: 176 PPPRVESAIVRMIPLESPLPCNQQALEAVVLKAFSMRRKVLRNCLAGMFTENQLIDAGVD 235

Query: 257 TNLRAENLSIEDFCRITNIL 276
             LR E +S+E +  + N L
Sbjct: 236 PTLRPETISLEQYVGLANRL 255


>gi|260589447|ref|ZP_05855360.1| dimethyladenosine transferase [Blautia hansenii DSM 20583]
 gi|331084461|ref|ZP_08333563.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260540192|gb|EEX20761.1| dimethyladenosine transferase [Blautia hansenii DSM 20583]
 gi|330401324|gb|EGG80911.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 289

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 143/275 (52%), Gaps = 18/275 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  Y  + +K  GQNFL+D ++L KI  ++       V+EIG G G +TQ  L   AR+
Sbjct: 15  VLQKYDFVFQKKFGQNFLIDTHVLDKIISAAEITKEDFVLEIGPGIGTMTQ-YLACAARE 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129
           V+ +E D+   PIL+D    + N + ++ +D LKVD +K     N   PI+++ANLPY I
Sbjct: 74  VVAVEIDKALIPILEDTLQDYSN-VTVLNEDILKVDIKKLADEHNNGKPIKVVANLPYYI 132

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++      D      ES+T++ QKEV +R+     +  YG LS+   +  +  ++ +
Sbjct: 133 TTPIIMGLFEGDVP---IESITVMVQKEVADRMQVGPGTKEYGALSLAVQYYAEPYIVAN 189

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR---- 243
           + P+ F P PKV S VI    H  P     ++  + +I + +F +RRKTL   L      
Sbjct: 190 VPPNCFMPRPKVGSAVIRLTKHAEPPVEVFDTKLMFRIIRASFNQRRKTLANGLNNSPEL 249

Query: 244 -LGGENL---LHQAGIETNLRAENLSIEDFCRITN 274
             G E +   +   G    +R E L++E+F  +TN
Sbjct: 250 SFGKEEIQRAIKACGFPEGIRGEALTLEEFAALTN 284


>gi|218291058|ref|ZP_03495090.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239012|gb|EED06218.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 284

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 146/280 (52%), Gaps = 17/280 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  +K +L  + +I KK  GQNFL+D  +L  I  +        V+E+G G G LT  L 
Sbjct: 6   AREVKELLRRHGVIAKKGYGQNFLVDARVLDGIVRAVEPDARTVVLEVGPGLGALTAALA 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRII-- 122
              A++V+ IEKD+   P+L ++ + H N  E++ +D LKVD        +    R++  
Sbjct: 66  ER-AKRVVAIEKDESLRPVLDEVLAPHGN-AEVLYEDCLKVDLRALLAPRLDEGDRLVFA 123

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +LF  + +D   P   ++ ++ QKEV +R+ A+     YG LS+   +R 
Sbjct: 124 ANLPYYVTTPILFQVLESDL--PVSHAVVMV-QKEVADRMVARPGGKDYGVLSIGVQYRG 180

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQS 240
           +   +F++ P  F P P V S V+       P     +  +L ++ + AFG RRKTL  +
Sbjct: 181 EVRRLFNVPPSAFLPQPGVESAVVEIDCDKRPALRAADEAALFRVVRAAFGTRRKTLENA 240

Query: 241 LKRLGG--ENLLHQ----AGIETNLRAENLSIEDFCRITN 274
           L    G  + ++ Q    AGI+   RAE LS+ DF R+T 
Sbjct: 241 LAAGLGMPKEMVRQKVVAAGIDPGARAEQLSLADFVRLTE 280


>gi|322390323|ref|ZP_08063851.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
           903]
 gi|321142971|gb|EFX38421.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
           903]
          Length = 291

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 145/279 (51%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++  D LKVD  ++     N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KR 243
            F +   VF P+P V S ++  +    P     +      +++ +F  RRKTL  +L  R
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREEPAVAVKDEDFFFSVSKASFVHRRKTLWNNLTSR 244

Query: 244 LGG--------ENLLHQAGIETNLRAENLSIEDFCRITN 274
            G         E  +  AG++ ++R E LS+EDF R+ +
Sbjct: 245 FGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLAD 283


>gi|319897933|ref|YP_004136130.1| s-adenosylmethionine-6-n',n'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae F3031]
 gi|317433439|emb|CBY81821.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae F3031]
          Length = 287

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF      E   
Sbjct: 53  EPVAEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|332365863|gb|EGJ43620.1| dimethyladenosine transferase [Streptococcus sanguinis SK355]
          Length = 290

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKVD  ++     N   
Sbjct: 61  TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ Q+EV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RRK
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRRK 235

Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G++          L +A +  ++R E LS+E+F R+ + L
Sbjct: 236 TLWNNLTSYFGKSEETKGKLSAALERADLSPSVRGEALSLEEFARLADAL 285


>gi|188588306|ref|YP_001919554.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498587|gb|ACD51723.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 283

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/275 (35%), Positives = 143/275 (52%), Gaps = 12/275 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y     K +GQNFLLD ++L  I   +   +   +IEIG G G LT  LL   A
Sbjct: 9   KELVKKYNFRFSKSLGQNFLLDESVLNDIVCGAEVNENDFIIEIGPGVGTLTAKLLQ-KA 67

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V  IE D    PIL+    ++ ++ E+I +DALKVDF +       ++++ANLPY + 
Sbjct: 68  KRVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYVT 126

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +  +     +ESLT++ QKEV ERI A+ N   YG LSVL  +     ++  +
Sbjct: 127 TPIIVKLLKENHK---FESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRKV 183

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG--G 246
           SP  F P PKV S VI      NP     +   L  I +  F  RRKTL  + K +G   
Sbjct: 184 SPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLSK 243

Query: 247 ENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
           E+L        I+   RAE LSIE+F  + + + D
Sbjct: 244 EDLQKAFDSCNIDPKRRAETLSIEEFAVLADSIHD 278


>gi|158259991|dbj|BAF82173.1| unnamed protein product [Homo sapiens]
          Length = 346

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 143/290 (49%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F+ S        P  +
Sbjct: 77  DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II  LP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGKLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L+ L  E         LL  A I+  LR   LSI  F  + ++
Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDV 306


>gi|295692081|ref|YP_003600691.1| dimethyladenosine transferase [Lactobacillus crispatus ST1]
 gi|295030187|emb|CBL49666.1| Dimethyladenosine transferase [Lactobacillus crispatus ST1]
          Length = 294

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 151/284 (53%), Gaps = 24/284 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D   +  I E++G      VIEIG G G+LT+ LL  GA
Sbjct: 14  QAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIR 120
            KV   E D     IL     K I  Q   +R +I+  D LK +F++    FF+ + PI+
Sbjct: 74  -KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKILLKDVLKANFKEDIGDFFDFTKPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ AQ  S  YG L++    
Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPGSKDYGPLTISVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237
             K  +   +  + F P PKV S+V+   P L   P  +E  K    + +  F +RRKTL
Sbjct: 190 EMKVKLALQVGRNSFMPRPKVDSSVVVLTP-LKEKP-AIEDRKHFIWVVKMCFSQRRKTL 247

Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +LK L       + L+ + G++  +R E+L+IE F +I   +
Sbjct: 248 NNNLKSLLPDKTERDKLITELGVDPRIRPEDLTIEQFIKIAKFI 291


>gi|254787084|ref|YP_003074513.1| dimethyladenosine transferaseS-adenosylmethionine-6-N',N'-adenosyl
           dimethyltransferase [Teredinibacter turnerae T7901]
 gi|237686969|gb|ACR14233.1| dimethyladenosine transferaseS-adenosylmethionine-6-N',N'-adenosyl
           dimethyltransferase [Teredinibacter turnerae T7901]
          Length = 267

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 136/258 (52%), Gaps = 9/258 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D  ++  I  +    +G  ++EIG G G +T +LL      + VIE D+ 
Sbjct: 12  KKRFGQNFLQDQGVINAIVRAVHPQEGDNLVEIGPGQGAITGLLLE-HCPNLQVIELDKD 70

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P L    ++     +I Q DAL  DF    ++  P+RI+ NLPYNI T L+F+ +S  
Sbjct: 71  LIPGLLAQFAKF-RGFKIHQTDALNFDFSSLSSVEHPLRIVGNLPYNISTPLIFHLLSFR 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                   +  + QKEV ER+ A     +YGRLS++  +  +   +F++ P  F P+PKV
Sbjct: 130 EQ---VRDMHFMLQKEVVERLAASPGEKNYGRLSIMAQYFCQVENLFEVPPECFIPAPKV 186

Query: 202 TSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            S ++  +PH   +P    ++ +   + + AF +RRKTLR SLK    +       I+  
Sbjct: 187 DSAIVRLVPH-KELPVKAHNMARFETLVKTAFAQRRKTLRNSLKSFEIDFASIDVKIDLA 245

Query: 259 LRAENLSIEDFCRITNIL 276
            RAENLS+E +  ++N L
Sbjct: 246 QRAENLSLEQYVNLSNAL 263


>gi|22537918|ref|NP_688769.1| dimethyladenosine transferase [Streptococcus agalactiae 2603V/R]
 gi|76798247|ref|ZP_00780496.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21]
 gi|33516934|sp|Q8DXR8|RSMA_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|22534816|gb|AAN00642.1|AE014272_13 dimethyladenosine transferase [Streptococcus agalactiae 2603V/R]
 gi|76586400|gb|EAO62909.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21]
          Length = 290

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 147/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D  ++  N ++++  D LK D     + F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A  N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMIQKEVADRISAMPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ AF  RRKTL  +L   
Sbjct: 185 SFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|325695462|gb|EGD37362.1| dimethyladenosine transferase [Streptococcus sanguinis SK150]
          Length = 290

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 155/291 (53%), Gaps = 23/291 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKVD  ++     N   
Sbjct: 61  TEFLAE-SATEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ Q+EV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESRIPFSE-FVVMMQREVADRISAQPNTKSYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRR 234
             +   A + F +   VF P+P V S ++  +    P P  +++ K   K+++ +F  RR
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRNQP-PVEVQNEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           KTL  +L    G++          L +A +  ++R E LS+E+F R+ + L
Sbjct: 235 KTLWNNLTSHFGKSEETKSKLTAALERADLSPSVRGEALSLEEFARLADAL 285


>gi|76787342|ref|YP_330398.1| dimethyladenosine transferase [Streptococcus agalactiae A909]
 gi|77406268|ref|ZP_00783335.1| dimethyladenosine transferase [Streptococcus agalactiae H36B]
 gi|119365850|sp|Q3JZA5|RSMA_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|76562399|gb|ABA44983.1| dimethyladenosine transferase [Streptococcus agalactiae A909]
 gi|77175121|gb|EAO77923.1| dimethyladenosine transferase [Streptococcus agalactiae H36B]
          Length = 290

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 147/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G LT+  L   A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTE-FLAENA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D  ++  N ++++  D LK D     + F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A  N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAMPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ AF  RRKTL  +L   
Sbjct: 185 SFIVPRTVFVPAPNVDSVILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|302873237|ref|YP_003841870.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
 gi|307688596|ref|ZP_07631042.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
 gi|302576094|gb|ADL50106.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
          Length = 282

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/277 (35%), Positives = 147/277 (53%), Gaps = 12/277 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           ++S K I+  Y     K +GQNFL D ++L  I   +   +   VIEIG G G LT+ LL
Sbjct: 3   NNSTKDIVLKYNFKFTKSLGQNFLTDDSVLNDIVNGAEVNENDVVIEIGPGVGTLTKELL 62

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
              A+KVI IE D    PIL++   +  N   +I  DA KVDF +       ++I+ANLP
Sbjct: 63  G-KAKKVIAIEVDSSLIPILQEELKEFDN-FTLIHKDATKVDFNELIEGEDTVKIVANLP 120

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++ + ++       + S+T++ QKEV +RI A  +S  YG L++L  +     +
Sbjct: 121 YYVTTPIITDLLNKKYN---FTSITVMIQKEVADRINANPSSKEYGALTLLVQYYCDTKI 177

Query: 187 MFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           +  + P  F P PKV STVI    +P    +    E   +I +++F  RRKTL   +K L
Sbjct: 178 VRVVPPSCFIPQPKVDSTVIRLDKLPAPRAVVEDEELFFRIIRDSFNMRRKTLWNGMKGL 237

Query: 245 GGENLLHQ-----AGIETNLRAENLSIEDFCRITNIL 276
           G E  L +     A I+   R E LSIE+F +++N +
Sbjct: 238 GLEKELLEKAFADADIDPKRRGETLSIEEFAKLSNCV 274


>gi|161506815|ref|YP_001576769.1| dimethyladenosine transferase [Lactobacillus helveticus DPC 4571]
 gi|172048354|sp|A8YX55|RSMA_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|160347804|gb|ABX26478.1| Dimethyladenosine transferase [Lactobacillus helveticus DPC 4571]
          Length = 294

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 152/281 (54%), Gaps = 24/281 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D N +  I E++    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  QVIINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPILKDI------SSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120
            KV   E D     IL++        +   +R +++  D LK +F++    FF++S PI+
Sbjct: 74  -KVFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  S  YG L++    
Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237
                +  +++ + F P PKV S+V+   P  N     +E+ K    + +  F +RRKTL
Sbjct: 190 EMDVKVALEVNHNSFMPRPKVDSSVVVLTPLKN--KPEIENRKHFVWVVKMCFSQRRKTL 247

Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
             +LK L       E L+ + G++  +R ENL+IE F  I 
Sbjct: 248 NNNLKTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEIA 288


>gi|308066864|ref|YP_003868469.1| Dimethyladenosine transferase [Paenibacillus polymyxa E681]
 gi|305856143|gb|ADM67931.1| Dimethyladenosine transferase [Paenibacillus polymyxa E681]
          Length = 294

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 149/282 (52%), Gaps = 19/282 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+  +    KK +GQNFL+D NIL KI  ++G  +    +EIG G G LT+ L    A
Sbjct: 14  KDIIQRHGFSFKKSLGQNFLIDQNILNKIVNAAGLDETKGALEIGPGIGALTEKLAQ-SA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126
           + V  +E DQ+  PIL+++ + +   +++   D LK+D  + F       S + ++ANLP
Sbjct: 73  KAVTAVEIDQRLLPILEEVLAPY-EHVKVRHGDVLKLDLREVFAADFADVSKVSVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   +  D  P   E++ ++ QKEV ER+ A   +  YG LS+   + ++  +
Sbjct: 132 YYVTTPILMRLLE-DKLP--LENIVVMIQKEVAERMAASPGTKDYGSLSIAVQYYSEPEL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLK-- 242
           +  +   VF P P V S VI   +    P+    E    ++   AF +RRKT+  +LK  
Sbjct: 189 VCIVPNTVFIPQPNVESAVIRLRVREAPPVEVVDEKHFFEVVHAAFAQRRKTISNNLKSR 248

Query: 243 ------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 R   E LL QAGIE + R E LSIE+F R++ +L +
Sbjct: 249 FFTKENRDTLEPLLQQAGIEPSRRGETLSIEEFARLSAVLLE 290


>gi|329961933|ref|ZP_08299946.1| dimethyladenosine transferase [Bacteroides fluxus YIT 12057]
 gi|328531156|gb|EGF58006.1| dimethyladenosine transferase [Bacteroides fluxus YIT 12057]
          Length = 264

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++  +  G+ V+E+G G G LTQ L+    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLKVAQDIADTVDACPGLPVLEVGPGMGVLTQFLVK-KERPVKVVEVDF 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++   +  ++  II+DD LK++ ++ F+  +P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLREAYPELEDK--IIEDDFLKMNLQRLFD-GNPFVLTGNYPYNISSQIFFKMLEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   S  YG LSVL     K   +F +  HVF P PK
Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPPPK 178

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +      C E L K++ +  F +RRKTLR S+K + G++      I  N 
Sbjct: 179 VKSAVIRMTRNDTRQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+++F  +TN
Sbjct: 239 RPEQLSVQEFIDLTN 253


>gi|300853385|ref|YP_003778369.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528]
 gi|300433500|gb|ADK13267.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528]
          Length = 280

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 152/284 (53%), Gaps = 16/284 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+ S +   ++  Y     K +GQNFL+D  +L  I  S+       +IEIG G G LT
Sbjct: 1   MNDLSTA--DVVKKYGFKFSKSLGQNFLIDNTVLDDIVNSADISKEDFIIEIGPGVGTLT 58

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A KV  IE D    PILK+      N  E+I  DALK+DF K  +    ++I+
Sbjct: 59  RELLK-KAGKVCAIELDSDLIPILKEELKDFKN-FELIHKDALKIDFNKIIDDEKNVKIV 116

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   ++ +     +++LT++ QKEVGERI+++ N   YG LS+L  +  
Sbjct: 117 ANLPYYVTTPIITRLLNENYN---FKTLTIMIQKEVGERISSEPNCKQYGALSILVQYYC 173

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQ 239
              ++  +SP  F P PKV S VI  +  L+     ++  K   K+ + +F  RRKTL  
Sbjct: 174 DVEVIRKVSPLSFIPRPKVESIVIK-LTKLDEPRVKVKDKKLFFKVVRCSFNMRRKTLWN 232

Query: 240 SLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           ++K L       E    +A I+   R E LSIE+F R+++ + D
Sbjct: 233 AVKTLKVPKEDMEAAFKKAEIDEKRRGETLSIEEFGRLSDCIYD 276


>gi|119474855|ref|ZP_01615208.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2143]
 gi|119451058|gb|EAW32291.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2143]
          Length = 267

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 130/255 (50%), Gaps = 7/255 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+ +IA +  + D   ++EIG G G LT  +L  G  ++  IE D+ 
Sbjct: 12  RKRFGQNFLQDQGIIHRIARAVHATDKDHIVEIGPGQGALTTDILA-GGCQLDAIELDRD 70

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PIL+   S+ P R  + Q DAL  DF         +R++ NLPYNI T L+F  +   
Sbjct: 71  LIPILQQQFSEQP-RFHLHQGDALTFDFSSLVKGEEKLRVVGNLPYNISTPLIFRLLDQH 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + Q EV  R+ A   S  YGRLS++  +      +F++ P  F P PKV
Sbjct: 130 EM---IQDMHFMLQLEVVNRLAASPGSKSYGRLSIMAQYYCDIHSLFEVPPEAFSPRPKV 186

Query: 202 TSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++   P+  P      +++L+ + +  F +RRKTLR SLK     + +    I  + 
Sbjct: 187 QSAIVRLTPYKQPPHPAKNIKTLQALLRTCFNQRRKTLRNSLKNDLSSDQMEALDINPSA 246

Query: 260 RAENLSIEDFCRITN 274
           R E LS+E F  ++N
Sbjct: 247 RPETLSLEQFVNMSN 261


>gi|332288954|ref|YP_004419806.1| dimethyladenosine transferase [Gallibacterium anatis UMN179]
 gi|330431850|gb|AEC16909.1| dimethyladenosine transferase [Gallibacterium anatis UMN179]
          Length = 282

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 149/287 (51%), Gaps = 22/287 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K+H     L H     +K  GQNFL D  I++ I  +        +IEIG G G LT
Sbjct: 1   MNSKTH-----LGH---TARKRFGQNFLHDDQIIQSIVAAINPQANDFLIEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-P 118
           + +       + VIE D+     L+     HP    +L +I+ D ++ DF++    +  P
Sbjct: 53  EPVAE-QIEHLTVIELDRDLAERLR----HHPFLHQKLTVIEQDVMRFDFQQLAQQAEKP 107

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           +RI  NLPYNI T L+F+      +    + +  + QKEV  R+ A  NS  YGRL+++ 
Sbjct: 108 LRIFGNLPYNISTPLMFHLFQ---YHDVIQDMHFMLQKEVVNRLCAGPNSKAYGRLTIMA 164

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKT 236
            +  +   + ++ P  F P+PKV S V+  +PH + P P   L  L ++  +AF +RRKT
Sbjct: 165 QYFCQVIPVLEVPPSAFKPAPKVDSAVVRLVPHKVLPYPVKDLYWLNRVCTQAFNQRRKT 224

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           LR SL  L     L +  I+   RAENL+I D+ R+ N L DN  +A
Sbjct: 225 LRNSLMDLFTAEQLVELEIKLTDRAENLTIADYARLANWLADNPPLA 271


>gi|319654955|ref|ZP_08009029.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2]
 gi|317393380|gb|EFV74144.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2]
          Length = 292

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 149/281 (53%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  Y    KK +GQNFL+D NIL++I + +   +    IEIG G G LT+  L   +
Sbjct: 12  RAILDKYGFSFKKSLGQNFLIDTNILRRIVDHADLSEESGAIEIGPGIGALTEQ-LARRS 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           +KV+  E DQ+  PIL++  S +P+ + II +D LK D     E+ F   + I ++ANLP
Sbjct: 71  KKVLAFEIDQRLLPILEETLSPYPH-VSIINEDVLKADVKTAIEQEFEGINDIMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  D  P     +  + QKEV +RI+A+  +  YG LS+   + T+A  
Sbjct: 130 YYVTTPIIMKLLE-DKLP--IRGIVCMLQKEVADRISARPGTKEYGSLSIAVQYYTEAET 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
              +   VF P P V S VI       P +    ES   K+T+ +F +RRKTL  +L   
Sbjct: 187 AMIVPKTVFVPQPNVDSAVIKLTKRKEPAVAVKSESFFFKVTKASFAQRRKTLLNNLTSQ 246

Query: 245 --GGE-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             GG+       + L QA +E   R E LSIE+F R+++ L
Sbjct: 247 LPGGKQKKEHILSALEQANVEPGRRGETLSIEEFARLSDAL 287


>gi|169642197|gb|AAI60475.1| tfb1m protein [Xenopus (Silurana) tropicalis]
          Length = 346

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 148/296 (50%), Gaps = 23/296 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  I+  + +  +K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119
           G  +++V+EKD +F P LK ++     +++I+  D L    ++ F  ++  P       +
Sbjct: 77  GVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWDDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPF---WESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W+   AD   PF      +TL FQKEV ER+TA  +S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLEQLADRTGPFTYGRTQMTLTFQKEVAERLTASTSSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++  +       F I    F P P+V   V+HF P + P I    + ++K+ +  F  R
Sbjct: 197 SIMAQYLCNVKNCFTIPGRAFVPKPEVDVGVVHFTPFIQPKIEQPFKVVEKVVRSVFQFR 256

Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           RK     +  L          E +L  A ++  LR   L++  F ++ N+  +  D
Sbjct: 257 RKYCHHGVSILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312


>gi|291533505|emb|CBL06618.1| dimethyladenosine transferase [Megamonas hypermegale ART12/1]
          Length = 287

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 151/283 (53%), Gaps = 14/283 (4%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ NK  + + IL  + I   K +GQNFL+D NI++ I +++   +   V+EIG G G L
Sbjct: 5   TIANKKVT-RYILQRFGIHMSKRLGQNFLIDANIVQGIVDAANVQENDRVLEIGPGIGTL 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           TQ L   GA +V  +E D++   +L      + N + +IQ D LKV+  +      P ++
Sbjct: 64  TQALAETGA-EVTCVELDKRLPEVLAHTLDAYDN-VRVIQGDILKVNIPEIMG-DKPFKV 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++   +  +   P  + + ++ QKEV ER+ AQ     YG LSV   + 
Sbjct: 121 VANLPYYITTPIIMALL--EKHLPITD-IVVMVQKEVAERMAAQPGGKTYGALSVAVQYY 177

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQ 239
           T   +   + P  F P P+V S V++      P    ++     ++ + AFG+RRKTL  
Sbjct: 178 TVPEIALYVPPRSFMPPPEVDSVVVNCKVRQTPAVELIDEKMFFRVVKAAFGQRRKTLNN 237

Query: 240 SLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK +G +     ++L +AGIE   R E L++E+F  I NIL 
Sbjct: 238 ALKSMGVDKNIIADVLDKAGIEATRRGETLTMEEFGAIANILA 280


>gi|77409014|ref|ZP_00785733.1| dimethyladenosine transferase [Streptococcus agalactiae COH1]
 gi|77172355|gb|EAO75505.1| dimethyladenosine transferase [Streptococcus agalactiae COH1]
          Length = 290

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 147/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D  ++  N ++++  D LK D     + F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A  N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMIQKEVADRISAMPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ AF  RRKTL  +L   
Sbjct: 185 SFIVPRTVFVPAPNVDSAILKMVCRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|150387987|ref|YP_001318036.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF]
 gi|166987687|sp|A6TJK9|RSMA_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|149947849|gb|ABR46377.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF]
          Length = 287

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 147/282 (52%), Gaps = 17/282 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+  YK    K +GQNFL+D NIL+ I + +       VIEIG G G LTQ +    A
Sbjct: 11  KAIVEKYKFRFSKSLGQNFLIDQNILEDIVDGADIQPDDCVIEIGPGIGTLTQFIAE-KA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPY 127
            KV+ IE D+   PILK   + + N +E+I  D LKVD  +         P+++IANLPY
Sbjct: 70  HKVVAIEIDRNLIPILKHTLADYQN-VEVINQDVLKVDLHQLIADKFEGKPVKVIANLPY 128

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            + T ++  ++  +  P   +SL ++ QKEV  R+ A   +  YG LS+   +     ++
Sbjct: 129 YVTTPIVMRFLE-EKVP--VDSLVIMIQKEVAVRMQAGPGTKDYGALSIAVQYYCNPEIL 185

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLK-KITQEAFGKRRKTLRQSLK--- 242
             + P VF P PKV S VI    +  P +    + L   + ++AFGKRRKTL  +L    
Sbjct: 186 LKVPPSVFIPQPKVESIVIKLQVYPEPKVKVERDDLMFALVKDAFGKRRKTLLNALSSGL 245

Query: 243 -RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +L  E +   L  A I+ N R E L+IE++  +T  +   Q
Sbjct: 246 LQLSKEIVRESLEAANIDENRRGETLTIEEYATLTKEVAARQ 287


>gi|46906420|ref|YP_012809.1| dimethyladenosine transferase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|226222817|ref|YP_002756924.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
           monocytogenes Clip81459]
 gi|254853694|ref|ZP_05243042.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-503]
 gi|254933027|ref|ZP_05266386.1| dimethyladenosine transferase [Listeria monocytogenes HPB2262]
 gi|254992659|ref|ZP_05274849.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-064]
 gi|255519705|ref|ZP_05386942.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-175]
 gi|300764931|ref|ZP_07074920.1| dimethyladenosine transferase [Listeria monocytogenes FSL N1-017]
 gi|62900545|sp|Q724M5|RSMA_LISMF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|259494253|sp|C1KYC1|RSMA_LISMC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|46879684|gb|AAT02986.1| dimethyladenosine transferase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|225875279|emb|CAS03976.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258607073|gb|EEW19681.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-503]
 gi|293584586|gb|EFF96618.1| dimethyladenosine transferase [Listeria monocytogenes HPB2262]
 gi|300514418|gb|EFK41476.1| dimethyladenosine transferase [Listeria monocytogenes FSL N1-017]
 gi|328469720|gb|EGF40642.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Listeria monocytogenes 220]
 gi|332310597|gb|EGJ23692.1| Ribosomal RNA small subunit methyltransferase A [Listeria
           monocytogenes str. Scott A]
          Length = 295

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVIAEQFAKPDLPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239
           A + F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL    
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244

Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278
                +LK    E +  L+  GI+   R E L I +F +++N L D
Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|47092871|ref|ZP_00230654.1| dimethyladenosine transferase [Listeria monocytogenes str. 4b
           H7858]
 gi|254825899|ref|ZP_05230900.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-194]
 gi|47018775|gb|EAL09525.1| dimethyladenosine transferase [Listeria monocytogenes str. 4b
           H7858]
 gi|293595137|gb|EFG02898.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-194]
 gi|328468506|gb|EGF39512.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Listeria monocytogenes 1816]
          Length = 295

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 151/286 (52%), Gaps = 29/286 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVIAEQFAKPDLPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSL 241
           A + F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244

Query: 242 K------RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
                  +   ++L   L+  GI+   R E L I +F +++N L D
Sbjct: 245 ASKFPALKPRKDDLVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|73663572|ref|YP_302353.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|119365849|sp|Q49V02|RSMA_STAS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|72496087|dbj|BAE19408.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 296

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L+ Y    KK +GQNFL+D+NI+  I ++S   +   +IE+G G G+LT+ L    A
Sbjct: 13  KALLNQYGFNFKKSLGQNFLIDVNIIHNIIDASDIDEQTGIIEVGPGMGSLTEQLAK-SA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           +KV+  E DQ+  P+LKD    + N + +I +D LK D   +          I ++ANLP
Sbjct: 72  KKVMAFEIDQRLIPVLKDTMRPYDN-VTVINEDILKADIAHYITEHLTDCEKIMVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +     P   +   ++ QKEVGER+ AQ  +  YG LS++  + T+ + 
Sbjct: 131 YYITTPILLNLMQQ-KLP--IDGYVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYTETSK 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR---QSL 241
           +  +   VF P P V S V+  +    PI    +  K  K+T+ AF +RRKT+    QSL
Sbjct: 188 VLTVPKSVFLPPPNVDSIVVKLMKRPTPIVDIDDENKFFKMTKAAFSQRRKTINNNYQSL 247

Query: 242 KRLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276
              G  N       L  AGI+   R E LSI++F  + N L
Sbjct: 248 FVNGKVNKEKILEWLEAAGIDPRRRGETLSIKEFANLYNEL 288


>gi|332877578|ref|ZP_08445322.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684427|gb|EGJ57280.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 258

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/254 (40%), Positives = 140/254 (55%), Gaps = 12/254 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL DLNI +KIA++    +   V+EIGAG G LTQ LL     +V V+E D++
Sbjct: 7   KKHLGQHFLKDLNIAQKIADTLSLANYKKVVEIGAGMGVLTQFLLKKDT-EVYVVEIDKE 65

Query: 82  FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               L+   + +P  R +II DD LK D   F  +  P  II N PYNI T+++F  +  
Sbjct: 66  SVAYLE---AHYPELRGKIIADDFLKYDIAGF--LREPFAIIGNFPYNISTQIVFKLLEL 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             + P     + +FQKEV ERI  ++ S  YG LSVL     +AT +F +S  VF P PK
Sbjct: 121 RDYVP---EFSGMFQKEVAERICEREGSKTYGILSVLVQAFYEATYLFTVSEGVFNPPPK 177

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S V+  +   +    C E+L   I + AF +RRKTLR SLK L     L    I  + 
Sbjct: 178 VKSGVLRLVRKSDYHLDCDEALFFTIVKTAFNQRRKTLRNSLKPLLTNEFLKNNSI-FDK 236

Query: 260 RAENLSIEDFCRIT 273
           R E L  +DF  IT
Sbjct: 237 RPEQLPWQDFVFIT 250


>gi|323465762|gb|ADX69449.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
           helveticus H10]
          Length = 294

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 151/281 (53%), Gaps = 24/281 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D N +  I E++    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  QAIINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPILKDI------SSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120
            KV   E D     IL++        +   +R +++  D LK +F++    FF++S PI+
Sbjct: 74  -KVFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  S  YG L++    
Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237
                +  ++  + F P PKV S+V+   P  N     +E+ K    + +  F +RRKTL
Sbjct: 190 EMDVKVALEVKHNSFMPRPKVDSSVVVLTPLKN--KPEIENRKHFVWVVKMCFSQRRKTL 247

Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
             +LK L       E L+ + G++  +R ENL+IE F  I 
Sbjct: 248 NNNLKTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEIA 288


>gi|293391018|ref|ZP_06635352.1| dimethyladenosine transferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951552|gb|EFE01671.1| dimethyladenosine transferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 287

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 145/288 (50%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D N+++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDNNVIQNIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113
           + +       + V+E D+     L+     HP    +L +I+ DA++ DF      E+  
Sbjct: 53  EPVAE-QVEHLTVLELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFSSLYEQERLA 107

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFH---YHHIIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHATLPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +   L     L   GI  N RAENLSI D+ R+ N L DN
Sbjct: 225 QRRKTLRNAFSGLFSAGNLTALGINLNARAENLSIADYARLANWLADN 272


>gi|255025830|ref|ZP_05297816.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-003]
          Length = 295

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239
           A + F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL    
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244

Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278
                +LK    E +  L+  GI+   R E L I +F +++N L D
Sbjct: 245 ASKFPALKPRKAELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|327438098|dbj|BAK14463.1| dimethyladenosine transferase [Solibacillus silvestris StLB046]
          Length = 295

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL+ I   +   +    IE+G G G LT+ L    A
Sbjct: 12  KEILEKYGFSFKKSLGQNFLIDPNILRNIVSHANLTENSGAIEVGPGIGALTEHL-AREA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLP 126
           +KV+  E DQ+  P+L+D  S + N ++I+  D LK D  +      P    I ++ANLP
Sbjct: 71  KKVVSFEIDQRLLPVLEDTLSPYDN-VKIVHSDILKADVAQVIEEEMPGIEDIMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   ++ D  P       ++ QKEV +RITA+  +  YG LS+   +   A +
Sbjct: 130 YYVTTPILMKLLN-DRLP--IRGFVVMMQKEVADRITAKPGTKAYGSLSIAIQFYVTAEI 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
              +   VF P P V S VI  I H NP    ++   L ++++ +F +RRKT+  +L+  
Sbjct: 187 AMVVPKTVFMPQPNVDSAVIRLIKHENPPVKVIDEDFLFEVSRASFAQRRKTILNNLQNG 246

Query: 245 ---GGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276
              G +N       L +AGIE + R E LSI++F ++ + L
Sbjct: 247 LVNGKQNKELILKALEEAGIEPSRRGETLSIQEFGKLADCL 287


>gi|332358479|gb|EGJ36304.1| dimethyladenosine transferase [Streptococcus sanguinis SK49]
          Length = 290

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKVD  ++     N   
Sbjct: 61  TEFLAE-SAVEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RRK
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPAAEVQDEKFFFKVSKASFVHRRK 235

Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G++          L +A +  ++R E LS+E+F R+ + L
Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERADLSPSVRGEALSLEEFARLADAL 285


>gi|167830454|ref|NP_001108082.1| mitochondrial dimethyladenosine transferase 1 isoform 1 [Bos
           taurus]
 gi|124053396|sp|Q2TBQ0|TFB1M_BOVIN RecName: Full=Mitochondrial dimethyladenosine transferase 1;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|296483884|gb|DAA25999.1| mitochondrial dimethyladenosine transferase 1 isoform 1 [Bos
           taurus]
          Length = 341

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 144/290 (49%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
           G  +++V+EKD +F P L+ +S   P +L I+  D L    E+ F  S        P  +
Sbjct: 77  GVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W+   +    PF    T   L FQKEV ER+TA   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTRMMLTFQKEVAERLTATTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++  +      +  I    F P P+V S V+HF P   P I    + ++K+ Q AF  R
Sbjct: 197 SIMAQYLCDVQHILTIPGQAFVPKPEVDSGVVHFTPLTRPRIKQPFKLVEKVVQNAFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L  L  E         LL  A ++  LR   L++  F  + ++
Sbjct: 257 RKYCHRGLGMLFPEARRLESTGKLLELADVDPTLRPTQLTVSHFKSLCDV 306


>gi|312865682|ref|ZP_07725906.1| dimethyladenosine transferase [Streptococcus downei F0415]
 gi|311098803|gb|EFQ57023.1| dimethyladenosine transferase [Streptococcus downei F0415]
          Length = 284

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 145/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 3   RAILERHGFTFKKSFGQNFLTDTNILQKIVDTTEIDQNVNVIEIGPGIGALTEFLAEQAA 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + +I +D LK D +     F N + PI+++ANLP
Sbjct: 63  -EVMTFEIDDRLIPILADTLRDFDN-VTVINEDILKSDLQTQIKNFANPNLPIKVVANLP 120

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV  RI+A+ N+  YG LS+   +   A +
Sbjct: 121 YYITTPILMHLIESKI--PFAE-FVVMMQKEVANRISAEPNTKAYGSLSIAVQYYMSAKV 177

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KR 243
            F +   VF P+P V S ++       P+    +      + + +F  RRKTL  +L  R
Sbjct: 178 AFIVPRTVFVPAPNVDSAILKMTRRPAPLIAVQDEDFFFDVAKASFVHRRKTLWNNLTNR 237

Query: 244 LGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G E          L  A ++ N+R E LSI+DF R+ + L D
Sbjct: 238 FGKEEATKSKLQAALEMAELKPNIRGEALSIQDFGRLADALLD 280


>gi|149007460|ref|ZP_01831103.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74]
 gi|147761032|gb|EDK68001.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74]
 gi|332071962|gb|EGI82450.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17545]
          Length = 290

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N + PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QA +  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQADLSPSVRGEALSLAEFAGLADAL 285


>gi|221106688|ref|XP_002161204.1| PREDICTED: similar to transcription factor B1, mitochondrial [Hydra
           magnipapillata]
          Length = 328

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 148/286 (51%), Gaps = 23/286 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +  ++  Y +  KK + QNF+LDLN+  KIA  +   D   VIE+G+GPG+L++ LL  G
Sbjct: 16  ISDLMRLYGLRAKKQLSQNFILDLNVTDKIARKADVFD-CNVIEVGSGPGSLSRSLLNAG 74

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSP---------I 119
            R +  +E D++F P L+ +       + I   D LK D  K   N+ S          I
Sbjct: 75  LRHLYAVEIDKRFLPSLELLQDASDGHMSIYHADILKFDMVKPLKNVISAEWESDDLPNI 134

Query: 120 RIIANLPYNIGTRLLFNWISA-DTWPPFWE----SLTLLFQKEVGERITAQKNSPHYGRL 174
           R++ NLP+++   L   W+ A  T    +      +TL+FQKEVG+ + A+  +    RL
Sbjct: 135 RLVGNLPFSVSIPLFLQWLEALSTRSGVFSFGRIPMTLVFQKEVGQNMVAEALNYDRSRL 194

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           +++       +   +IS  VF P PKV + ++HFIP   P I      ++++ +  F KR
Sbjct: 195 AIMAQNYCHVSRAMEISSSVFVPEPKVDAWLMHFIPLKKPAIDAPFNVVEQVVKAIFSKR 254

Query: 234 RKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRIT 273
           RK ++  L+RL  EN      LL +  ++TNLR   L + DF  IT
Sbjct: 255 RKIIKTPLRRLFPENERLADELLDRIKLDTNLRPHQLELHDFNLIT 300


>gi|290892256|ref|ZP_06555251.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-071]
 gi|290558082|gb|EFD91601.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-071]
          Length = 295

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNVQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239
           A + F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL    
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244

Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278
                +LK    E +  L+  GI+   R E L I +F +++N L D
Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|256960062|ref|ZP_05564233.1| dimethyladenosine transferase [Enterococcus faecalis Merz96]
 gi|256950558|gb|EEU67190.1| dimethyladenosine transferase [Enterococcus faecalis Merz96]
          Length = 292

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 148/283 (52%), Gaps = 24/283 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+  L + A
Sbjct: 14  KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++ANLP
Sbjct: 73  AQVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVVANLP 131

Query: 127 YNIGTRLLFNWI--SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           Y I T ++ +++  S D        + ++ QKEV +RI A+  +  YG LS+   +  +A
Sbjct: 132 YYITTPIMMHFLESSLDV-----AEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFMEA 186

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242
           ++ F +   VF P P V S +I       P        +  K+T+ +F  RRKTL  +L 
Sbjct: 187 SVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLT 246

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
              G++          L +A I+ + R E LS+E+F R++N L
Sbjct: 247 HFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNAL 289


>gi|309750045|gb|ADO80029.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae R2866]
          Length = 287

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 149/288 (51%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF++ +   +  
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFDELYTTENLA 107

Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L  +  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNLVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|116496022|ref|YP_807756.1| dimethyladenosine transferase (rRNA methylation) [Lactobacillus
           casei ATCC 334]
 gi|116106172|gb|ABJ71314.1| dimethyladenosine transferase [Lactobacillus casei ATCC 334]
          Length = 298

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 140/277 (50%), Gaps = 18/277 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  +    +K +GQNFL D  IL+KI  ++       VIEIG G G LTQ L    A +
Sbjct: 16  ILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLAD-SAHQ 74

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128
           V+ +E D +  PIL +  + +PN   ++ +D LK D      + F+    ++++ANLPY 
Sbjct: 75  VVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPYY 133

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L + + A   P    S+T++ Q+EV ER++A   S  YG LS+           F
Sbjct: 134 ITTPILLHLLRAQ-LP--LHSMTVMMQREVAERLSATPGSKEYGSLSIAVQLVASVATAF 190

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG 246
            +S H F P+P V S ++       P+    +  S  ++ + AF  RRKTL  +L  L G
Sbjct: 191 TVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLFG 250

Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +       + L  A I+   RAE LSI DF R+   L
Sbjct: 251 KTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRAL 287


>gi|218129242|ref|ZP_03458046.1| hypothetical protein BACEGG_00819 [Bacteroides eggerthii DSM 20697]
 gi|317475217|ref|ZP_07934484.1| dimethyladenosine transferase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988620|gb|EEC54940.1| hypothetical protein BACEGG_00819 [Bacteroides eggerthii DSM 20697]
 gi|316908670|gb|EFV30357.1| dimethyladenosine transferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 261

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 138/257 (53%), Gaps = 8/257 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA +  +   + V+E+G G G LTQ LL  G R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIANTVDACPELPVLEVGPGMGVLTQFLLPKG-RTVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q  +   II+DD LK++ ++ F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPQLED--HIIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     +   +F +  HVF P 
Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K++ +  F +RRKTLR S+K + G++      +  
Sbjct: 177 PKVKSAVIRMTRNDTQQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236

Query: 258 NLRAENLSIEDFCRITN 274
           N R E LS+++F  +TN
Sbjct: 237 NKRPEQLSVQEFIELTN 253


>gi|237809113|ref|YP_002893553.1| dimethyladenosine transferase [Tolumonas auensis DSM 9187]
 gi|259494261|sp|C4L9L4|RSMA_TOLAT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|237501374|gb|ACQ93967.1| dimethyladenosine transferase [Tolumonas auensis DSM 9187]
          Length = 268

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 136/261 (52%), Gaps = 13/261 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D   +  I  +        ++EIG G G LT+ +      K+ V+E D+ 
Sbjct: 13  RKRFGQNFLHDQYTIDSIVSAIAPRQNDVMVEIGPGLGALTEPVCD-QIDKLHVVELDRD 71

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+    +HP   ++L + + DA+K +F++      P+RI  NLPYNI T L+F+ +
Sbjct: 72  LAARLR----EHPRLKDKLIVHEADAMKFNFDELAQPGRPLRIFGNLPYNISTPLIFHLL 127

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                  +   +  + QKEV ER+ A  NS  YGRL+V+T +  +   + ++ PH F P+
Sbjct: 128 EKSQ---YITDMYFMLQKEVVERLAAGPNSKDYGRLTVMTQYYCQVMPVLEVGPHAFKPA 184

Query: 199 PKVTSTVIHFIP-HLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P    P     +  L+++ QE FG+RRKT+R + +       L +  I 
Sbjct: 185 PKVNSAVVRLAPWKKRPYEALNIADLQRVCQEGFGQRRKTIRNTFRSFITAEQLEEIDIN 244

Query: 257 TNLRAENLSIEDFCRITNILT 277
            NLR ENL++  F  I N LT
Sbjct: 245 PNLRPENLTLAQFVSIANWLT 265


>gi|15901808|ref|NP_346412.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4]
 gi|14973492|gb|AAK76052.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4]
          Length = 279

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 146/279 (52%), Gaps = 20/279 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A +
Sbjct: 1   MLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA-Q 59

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128
           V+  E D +  PIL D      N + ++ +D LKVD     + F N   PI+++ANLPY 
Sbjct: 60  VMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLPYY 118

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A + F
Sbjct: 119 ITTPILMHLI--ESGIPFCE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKVAF 175

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG 246
            +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L    G
Sbjct: 176 IVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFG 235

Query: 247 EN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           +           L QAG+  ++R E LS+ +F  + + L
Sbjct: 236 KTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 274


>gi|217965726|ref|YP_002351404.1| dimethyladenosine transferase [Listeria monocytogenes HCC23]
 gi|254807872|sp|B8DGN7|RSMA_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|217334996|gb|ACK40790.1| dimethyladenosine transferase [Listeria monocytogenes HCC23]
 gi|307569727|emb|CAR82906.1| dimethyladenosine transferase [Listeria monocytogenes L99]
          Length = 295

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAYSN-VQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239
           A + F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL    
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244

Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278
                +LK    E +  L+  GI+   R E L I +F +++N L D
Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|289433536|ref|YP_003463408.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169780|emb|CBH26316.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 295

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 148/286 (51%), Gaps = 29/286 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL 241
           A + F +   VF P P V S VIH      P+    +     ++T+ +F +RRKTL  +L
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDESFFFEVTRASFAQRRKTLWNNL 244

Query: 242 KRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                E           L+  GI+   R E L I +F +++N L D
Sbjct: 245 ASKFPELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKLSNFLAD 290


>gi|327462724|gb|EGF09046.1| dimethyladenosine transferase [Streptococcus sanguinis SK1057]
          Length = 290

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 150/290 (51%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKVD  ++     N   
Sbjct: 61  TEFLAE-SAAEVMAFEIDDRLVPILADTLRNFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RRK
Sbjct: 176 VQYYMTAKVAFVVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRRK 235

Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G++          L +  +  ++R E LS+E+F R+ + L
Sbjct: 236 TLWNNLTSYFGKSEATKGKLTAALERTDLSPSVRGEALSLEEFARLADAL 285


>gi|324992524|gb|EGC24445.1| dimethyladenosine transferase [Streptococcus sanguinis SK405]
 gi|324995947|gb|EGC27858.1| dimethyladenosine transferase [Streptococcus sanguinis SK678]
 gi|327460748|gb|EGF07083.1| dimethyladenosine transferase [Streptococcus sanguinis SK1]
 gi|327472469|gb|EGF17900.1| dimethyladenosine transferase [Streptococcus sanguinis SK408]
 gi|328944611|gb|EGG38772.1| dimethyladenosine transferase [Streptococcus sanguinis SK1087]
          Length = 290

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKVD  ++     N   
Sbjct: 61  TEFLAE-SAVEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RRK
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPAAEVQDEKFFFKVSKASFVHRRK 235

Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G++          L +A +  ++R E LS+E+F R+ + L
Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADAL 285


>gi|145640522|ref|ZP_01796106.1| dimethyladenosine transferase [Haemophilus influenzae R3021]
 gi|145275108|gb|EDK14970.1| dimethyladenosine transferase [Haemophilus influenzae 22.4-21]
          Length = 287

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF      E   
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|160871590|ref|ZP_02061722.1| dimethyladenosine transferase [Rickettsiella grylli]
 gi|159120389|gb|EDP45727.1| dimethyladenosine transferase [Rickettsiella grylli]
          Length = 269

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 136/258 (52%), Gaps = 9/258 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+FL +  I+ KI  +       ++IEIG G G LT+ L+ L    +I IE D+ 
Sbjct: 8   RKRFGQHFLHERTIIDKIIHAIAPKKTDSMIEIGPGLGALTEQLVPL-VHYLIAIELDKN 66

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P+L++          I+Q D L VDF     I    R++ NLPYNI T LLF+ I+  
Sbjct: 67  LIPLLEE-KCVGLGEFMILQGDVLNVDFRTLTKIKCRWRVVGNLPYNISTPLLFHCINHV 125

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +     + +  + QKEV +RI AQ     YGRLSV+  +  +   +F++ P  F P PKV
Sbjct: 126 SN---IQDMHFMLQKEVADRINAQPGQSSYGRLSVMIQYYCQVEKLFNVKPGAFRPPPKV 182

Query: 202 TSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            S VI  IP+   +P   +S     +I + AF  RRK LR +L     E+   Q GI ++
Sbjct: 183 DSAVIRLIPY-RKLPHKAKSSLLFAEIVKNAFNHRRKMLRNNLSYCLQEHDFEQLGIRSS 241

Query: 259 LRAENLSIEDFCRITNIL 276
           +R E L++ D+ ++ N +
Sbjct: 242 VRPEQLAVNDYVKLANFV 259


>gi|312878167|ref|ZP_07738097.1| dimethyladenosine transferase [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311795057|gb|EFR11456.1| dimethyladenosine transferase [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 282

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 151/270 (55%), Gaps = 13/270 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L ++L  Y + P K +GQNFL+D N+++KI   S  ++G  V+EIGAGPG LT + L  
Sbjct: 9   ELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFS-QVEGKEVVEIGAGPGTLT-VYLAK 66

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A+KV  +E D++   +LK++  Q  + ++I+  D L+++ +   N  + + I+ NLPY 
Sbjct: 67  TAQKVFAVEIDKKILNVLKEVC-QVISNVQIVNSDFLELNVKDLTN-GNKVYIVGNLPYY 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + +++LF            E  T++ QKEV +R+ A+  +  YG L+V   +  +    F
Sbjct: 125 VTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIEDYF 181

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR---LG 245
            +S +VF+P P+V S V+     +       ++  KI    F  RRKT+  +L     + 
Sbjct: 182 YVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKNFFKIVHACFSTRRKTILNALSNQLDIA 241

Query: 246 GENL---LHQAGIETNLRAENLSIEDFCRI 272
            E L   +H AG++ NLRAE+LS++D+ R+
Sbjct: 242 KEELKKIIHMAGLDENLRAEDLSLDDYIRL 271


>gi|16272493|ref|NP_438707.1| dimethyladenosine transferase [Haemophilus influenzae Rd KW20]
 gi|145628930|ref|ZP_01784730.1| dimethyladenosine transferase [Haemophilus influenzae 22.1-21]
 gi|260580996|ref|ZP_05848819.1| dimethyladenosine transferase [Haemophilus influenzae RdAW]
 gi|1170712|sp|P44749|RSMA_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|1573534|gb|AAC22207.1| dimethyladenosine transferase (ksgA) [Haemophilus influenzae Rd
           KW20]
 gi|144979400|gb|EDJ89086.1| dimethyladenosine transferase [Haemophilus influenzae 22.1-21]
 gi|260092355|gb|EEW76295.1| dimethyladenosine transferase [Haemophilus influenzae RdAW]
          Length = 287

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF      E   
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|237749068|ref|ZP_04579548.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter
           formigenes OXCC13]
 gi|229380430|gb|EEO30521.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter
           formigenes OXCC13]
          Length = 256

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 141/261 (54%), Gaps = 9/261 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D ++L  I  +        ++EIG G G +T+ LL   + ++ VIE
Sbjct: 2   KHIPRKRFGQNFLKDQSVLDDIVSAIAPKPTDHMLEIGPGMGAMTENLLPYLS-QMDVIE 60

Query: 78  KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLF 135
            D+     LK    + P ++L I Q DAL  DF      S +  RI+ NLPYNI + LLF
Sbjct: 61  LDRDLVVYLK---KRFPADKLTIHQGDALSFDFRTIGASSENKWRIVGNLPYNISSPLLF 117

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + ++  +     E    + Q+EV ER+ A+  +  YGRLSV+  W+    ++F + P  F
Sbjct: 118 HLMNFSSC---IEDQHFMLQREVVERMVAEPGNKAYGRLSVMLQWQYDMELLFIVPPTAF 174

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P P+V S ++  IP   P  C   +L+K   +AF +RRK LR +L  L  E+ L + GI
Sbjct: 175 DPMPRVDSAIVRMIPRETPEACSSVALEKTVTQAFSQRRKMLRNNLAPLFSESRLIELGI 234

Query: 256 ETNLRAENLSIEDFCRITNIL 276
           +   R E+L++E F  + N L
Sbjct: 235 DPTRRPEDLTVEQFILLANHL 255


>gi|145637409|ref|ZP_01793068.1| dimethyladenosine transferase [Haemophilus influenzae PittHH]
 gi|145269355|gb|EDK09299.1| dimethyladenosine transferase [Haemophilus influenzae PittHH]
          Length = 287

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF      E   
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|168484284|ref|ZP_02709236.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00]
 gi|172042507|gb|EDT50553.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00]
 gi|332199410|gb|EGJ13487.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47368]
          Length = 290

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N +  I+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLSIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|152999580|ref|YP_001365261.1| dimethyladenosine transferase [Shewanella baltica OS185]
 gi|160874199|ref|YP_001553515.1| dimethyladenosine transferase [Shewanella baltica OS195]
 gi|166221701|sp|A6WK59|RSMA_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028816|sp|A9L438|RSMA_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|151364198|gb|ABS07198.1| dimethyladenosine transferase [Shewanella baltica OS185]
 gi|160859721|gb|ABX48255.1| dimethyladenosine transferase [Shewanella baltica OS195]
 gi|315266431|gb|ADT93284.1| dimethyladenosine transferase [Shewanella baltica OS678]
          Length = 268

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 149/286 (52%), Gaps = 27/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH-----LGH---TARKRFGQNFLTDGNVIDRIVGAIAPDNHHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFF------PILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           + +       + V+E D+         P+LKD       +L I Q DAL+ DF +     
Sbjct: 53  EPVAE-AVDNLTVVELDRDLVERLHHHPVLKD-------KLTIHQGDALQFDFGQLSVPG 104

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +++  NLPYNI T L+F+      +    E++  + QKEV  R++A      YGRL+V
Sbjct: 105 KKMKVFGNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTV 161

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ PH F P+PKV S V+  +P+ + P PC  +  L+ +   AF  RR
Sbjct: 162 MAQYFCQVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFPCKDVTVLRHLCTTAFNMRR 221

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTLR +LK +  ++   Q GI+++ R E +S++ +  + N++ D +
Sbjct: 222 KTLRNNLKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267


>gi|296875726|ref|ZP_06899791.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
           15912]
 gi|296433296|gb|EFH19078.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
           15912]
          Length = 291

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 145/279 (51%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++  D LKVD  ++     N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-KR 243
            F +   VF P+P V S ++  +    P     +      +++ +F  RRKTL  +L  R
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREKPAVTVKDEDFFFSVSKASFVHRRKTLWNNLTSR 244

Query: 244 LGG--------ENLLHQAGIETNLRAENLSIEDFCRITN 274
            G         E  +  AG++ ++R E LS+EDF R+ +
Sbjct: 245 FGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLAD 283


>gi|291549844|emb|CBL26106.1| dimethyladenosine transferase [Ruminococcus torques L2-14]
          Length = 304

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 153/291 (52%), Gaps = 21/291 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  ++++ +L  Y  + +K  GQNFL+D ++L KI  ++       V+EIG G G +
Sbjct: 19  TLGNPQNTIE-VLQKYNFVFQKKFGQNFLIDTHVLDKIIAAAEITKDDFVLEIGPGIGTM 77

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ  L   ARKV+ +E D+   PIL+D  S + N   +I +D LKVD  K     N   P
Sbjct: 78  TQ-YLACAARKVVAVEIDKALIPILEDTLSDYDN-ARVINNDVLKVDIAKLAEEENGGKP 135

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++      +   P  +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 136 IKVVANLPYYITTPIIMGLF--ENHVPI-KSITVMVQKEVADRMQVGPGTKDYGALSLAV 192

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235
            +  K  ++ ++ P+ F P PKV S VI    +  P P  ++  K   +I + +F +RRK
Sbjct: 193 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERYEEP-PVKVKDEKLMFRIIRASFNQRRK 251

Query: 236 TLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           TL   LK            E  +   G   ++R E L++E+F ++ + L D
Sbjct: 252 TLANGLKNSAELDYTKEEIEAAIEALGRGASIRGEALTLEEFAKLADFLYD 302


>gi|270158275|ref|ZP_06186932.1| dimethyladenosine transferase [Legionella longbeachae D-4968]
 gi|289163469|ref|YP_003453607.1| dimethyladenosine transferase (16S rRNA dimethylase) [Legionella
           longbeachae NSW150]
 gi|269990300|gb|EEZ96554.1| dimethyladenosine transferase [Legionella longbeachae D-4968]
 gi|288856642|emb|CBJ10453.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Legionella longbeachae NSW150]
          Length = 256

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 141/262 (53%), Gaps = 14/262 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79
           P+K  GQNFL + +I+ +I  +        ++EIG G G LTQ LL  L     + I+ D
Sbjct: 5   PRKRFGQNFLQNQHIINRIVHAINPQPQDNMLEIGPGLGALTQSLLRYLNHLTAVEIDTD 64

Query: 80  -QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
            Q++   L  I+    ++L +I  DAL +D+ +F      +R++ NLPYNI T LL + +
Sbjct: 65  LQKYLTELSGIA----DKLHLIAADALTLDYNQF---GPNLRVVGNLPYNISTPLLIHLL 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    E +  + QKEV ER+ AQ     YGRL+V+  +      +FD+ P  F P 
Sbjct: 118 K---FTASIEDMHFMLQKEVVERMAAQPGCKAYGRLTVMLQYHCTVEHLFDVPPEAFDPK 174

Query: 199 PKVTSTVIHFIPH-LNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +PH ++P     +E L+ +   AF  RRKTL  +LK L   + LH  GI+
Sbjct: 175 PKVDSAVVRLVPHRISPFEQIAVERLEYLVAHAFAMRRKTLNNNLKGLITADQLHDLGID 234

Query: 257 TNLRAENLSIEDFCRITNILTD 278
            + R E +SI ++ ++   +++
Sbjct: 235 GSRRPEQISISEYVQLAKFISN 256


>gi|239637479|ref|ZP_04678453.1| dimethyladenosine transferase [Staphylococcus warneri L37603]
 gi|239596924|gb|EEQ79447.1| dimethyladenosine transferase [Staphylococcus warneri L37603]
          Length = 296

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 146/277 (52%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+ KI ++S   +   +IE+G G G+LT+ L    A
Sbjct: 13  RALLDQYGFDFKKSLGQNFLVDVNIINKIIDASDIDETTGIIEVGPGMGSLTEQLAK-HA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRIIANLP 126
           +KV+  E D +  P+LKD  + + N + II +D LK D     N        I ++ANLP
Sbjct: 72  KKVMSFEIDHRLIPVLKDTLAPYDN-VTIINEDILKADIATAVNEHLKDCDKIMVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  +  YG LS++T + T+ + 
Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYTETSK 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 188 VLTVPKTVFMPPPNVDSIVVKLMQRSTPLVDIDDEEAFFKLAKAAFAQRRKTINNNYQNF 247

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             E   H         +A I+   R E LSI+DF ++
Sbjct: 248 FKEGKQHKESILSWLEKANIDPRRRGETLSIQDFAQL 284


>gi|145638541|ref|ZP_01794150.1| dimethyladenosine transferase [Haemophilus influenzae PittII]
 gi|145272136|gb|EDK12044.1| dimethyladenosine transferase [Haemophilus influenzae PittII]
          Length = 287

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 149/288 (51%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF++ +   +  
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFDELYTTENLA 107

Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+  + N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYAHLANWLADN 272


>gi|50513341|pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
           Conserved Adenosine Dimethyltransferase
 gi|50513342|pdb|1QYR|B Chain B, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
           Conserved Adenosine Dimethyltransferase
          Length = 252

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/261 (35%), Positives = 136/261 (52%), Gaps = 18/261 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFP 84
           QNFL D  ++  I  +     G  ++EIG G   LT+    +G R  ++ VIE D+    
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLAA 57

Query: 85  ILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISA 140
            L+     HP    +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S 
Sbjct: 58  RLQ----THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS- 112

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PK
Sbjct: 113 --YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPK 170

Query: 201 VTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+  
Sbjct: 171 VDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPA 230

Query: 259 LRAENLSIEDFCRITNILTDN 279
           +RAEN+S+  +C++ N L +N
Sbjct: 231 MRAENISVAQYCQMANYLAEN 251


>gi|332365155|gb|EGJ42918.1| dimethyladenosine transferase [Streptococcus sanguinis SK1059]
          Length = 290

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKVD  ++     N   
Sbjct: 61  TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P++++ANLPY I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+ 
Sbjct: 119 PVKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKSYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     KI++ +F  RRK
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVEVQDEKFFFKISKASFVHRRK 235

Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G++          L +A +  ++R E LS+E+F R+ + L
Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADAL 285


>gi|217969878|ref|YP_002355112.1| dimethyladenosine transferase [Thauera sp. MZ1T]
 gi|217507205|gb|ACK54216.1| dimethyladenosine transferase [Thauera sp. MZ1T]
          Length = 272

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 142/271 (52%), Gaps = 23/271 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL D NI++KI +      G  ++EIG G G +T  L+  LG   V+ I++D 
Sbjct: 12  RKRFGQNFLSDPNIIRKIIDGIRPQPGELMVEIGPGLGAMTDPLIERLGHLHVVEIDRD- 70

Query: 81  QFFPILKDISSQH-PNRLEIIQDDALKVDFEKFF-----NISSPIRIIANLPYNIGTRLL 134
               ++  +  ++ P +L + + DALK DF          +   +RI+ NLPYNI T +L
Sbjct: 71  ----LIARLHERYTPAQLTVHEGDALKFDFGSLCAGEEGGVGPRLRIVGNLPYNISTPIL 126

Query: 135 FNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           F+    AD      + +T + QKEV  R+ A+  +  YGRLSV+  +R +   +FD+ P 
Sbjct: 127 FHLAGFADQV----KDMTFMLQKEVVMRMVAEPGTEEYGRLSVMLQYRFRMGRLFDVPPG 182

Query: 194 VFFPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
            F P+PKV S+++   P     L      L  L +I   AFG+RRKTLR +L+    +  
Sbjct: 183 AFRPAPKVMSSIVRMAPLPAEQLGARDEAL--LGRIVAAAFGQRRKTLRNTLREFIDDAG 240

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           L   GI+  LR E LS+E +  I N     +
Sbjct: 241 LQALGIDPGLRGEKLSVEQYVAIANACAGRE 271


>gi|16802234|ref|NP_463719.1| dimethyladenosine transferase [Listeria monocytogenes EGD-e]
 gi|47096181|ref|ZP_00233780.1| dimethyladenosine transferase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224500359|ref|ZP_03668708.1| dimethyladenosine transferase [Listeria monocytogenes Finland 1988]
 gi|224503492|ref|ZP_03671799.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-561]
 gi|254829279|ref|ZP_05233966.1| dimethyladenosine transferase [Listeria monocytogenes FSL N3-165]
 gi|254832492|ref|ZP_05237147.1| dimethyladenosine transferase [Listeria monocytogenes 10403S]
 gi|254901027|ref|ZP_05260951.1| dimethyladenosine transferase [Listeria monocytogenes J0161]
 gi|254913905|ref|ZP_05263917.1| dimethyladenosine transferase dimethyltransferase [Listeria
           monocytogenes J2818]
 gi|254938304|ref|ZP_05270001.1| dimethyladenosine transferase [Listeria monocytogenes F6900]
 gi|255030001|ref|ZP_05301952.1| dimethyladenosine transferase [Listeria monocytogenes LO28]
 gi|27151582|sp|Q8YAE2|RSMA_LISMO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|16409545|emb|CAC98403.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
           monocytogenes EGD-e]
 gi|47015429|gb|EAL06363.1| dimethyladenosine transferase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601690|gb|EEW15015.1| dimethyladenosine transferase [Listeria monocytogenes FSL N3-165]
 gi|258610916|gb|EEW23524.1| dimethyladenosine transferase [Listeria monocytogenes F6900]
 gi|293591922|gb|EFG00257.1| dimethyladenosine transferase dimethyltransferase [Listeria
           monocytogenes J2818]
          Length = 295

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 29/286 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239
           A + F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL    
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244

Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278
                +LK    E +  L+  GI+   R E L I +F +++N L D
Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|328956557|ref|YP_004373943.1| dimethyladenosine 16S ribosomal RNA transferase [Carnobacterium sp.
           17-4]
 gi|328672881|gb|AEB28927.1| dimethyladenosine 16S ribosomal RNA transferase [Carnobacterium sp.
           17-4]
          Length = 297

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 146/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+  Y    KK +GQNF++D NIL  I  +S       VIE+G G G LT+ L    +
Sbjct: 14  KEIMEKYGFSVKKSLGQNFIVDPNILNNIVAASNIDKNTNVIEVGPGIGALTEHL-ARAS 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
           ++VI  E D +  P+L D  S + N + I+  D LK++ +K      ++  P+ ++ANLP
Sbjct: 73  KEVIAFEIDNRLLPVLADTLSPYDN-VSIVHSDVLKINLQKTLPEMIDLDEPLVVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ +++     P   + LT++ QKEV ERITA   S  YG LS+   +  +A +
Sbjct: 132 YYITTPIIMHFLET---PVRIDGLTIMMQKEVAERITAAPGSKAYGSLSIAIQYYMEAEV 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLK-R 243
            F +   VF P P V S +I       P       +S   + + AF +RRKTL  +L  R
Sbjct: 189 AFIVPKTVFVPQPNVDSAIIKLTRRATPSVTVKNEKSFFALVRSAFVQRRKTLWNNLLIR 248

Query: 244 LGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G E+         L  A I+   R E LS+E+F R+++ + +
Sbjct: 249 YGKEDSTREKLTQALEAASIDPKRRGETLSLEEFGRLSDAIDE 291


>gi|328675684|gb|AEB28359.1| Dimethyladenosine transferase [Francisella cf. novicida 3523]
          Length = 262

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 141/268 (52%), Gaps = 13/268 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDMVVEIGPGLGALTRYLLC-TSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           IE D      L   + Q      I   D LK D     N+S+  I++I NLPYNI + +L
Sbjct: 61  IEFDASVIDTLI-ANCQKYGTPRIYNQDFLKFDISSLENLSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFNCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLL- 250
           F+P PKV S ++   P  N     L++    ++I +++F +RRKTL  +LK +  E  + 
Sbjct: 177 FYPQPKVDSAILRLKPKNN--KALLKNYHFFEEIVKQSFAQRRKTLHNNLKYMLKERKID 234

Query: 251 -HQAGIETNLRAENLSIEDFCRITNILT 277
            +   ++TNLRAENLS+ DF  + N L+
Sbjct: 235 PNTLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|226938959|ref|YP_002794030.1| dimethyladenosine transferase [Laribacter hongkongensis HLHK9]
 gi|254807871|sp|C1D9C2|RSMA_LARHH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226713883|gb|ACO73021.1| KsgA [Laribacter hongkongensis HLHK9]
          Length = 262

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/259 (35%), Positives = 138/259 (53%), Gaps = 13/259 (5%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEK 78
           IPKK  GQNFL D  I+  I  +  +  G  V+EIG G G LT+ LL  L    V+ I++
Sbjct: 5   IPKKRFGQNFLQDAFIIHSIVAAVDARPGDVVVEIGPGLGALTRPLLRALPQLHVVEIDR 64

Query: 79  DQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D     I+  ++++ P  RL I + DAL  DF    +   P++++ NLPYNI T LLF+ 
Sbjct: 65  D-----IIARLAAEFPPERLVIHEGDALAFDFGALAH-EQPLKLVGNLPYNISTPLLFHL 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
               T+      +  + QKEV +R+ A      YGRL+V+  +R     + D+ P  F P
Sbjct: 119 A---TYADRVTDMHFMLQKEVVDRMVADPGCADYGRLTVMLQYRFAMERLIDVPPESFDP 175

Query: 198 SPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S V+  IPH   P P    E+L  +  +AF +RRKTLR +L+    ++     GI
Sbjct: 176 PPKVDSAVVRMIPHAELPWPADDEENLSALVAQAFAQRRKTLRNNLRGWLDDDDFAALGI 235

Query: 256 ETNLRAENLSIEDFCRITN 274
           +   R E L++ +F  ++N
Sbjct: 236 DPQRRPETLTLREFVLLSN 254


>gi|94985245|ref|YP_604609.1| dimethyladenosine transferase [Deinococcus geothermalis DSM 11300]
 gi|118600863|sp|Q1IZ94|RSMA_DEIGD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94555526|gb|ABF45440.1| dimethyladenosine transferase [Deinococcus geothermalis DSM 11300]
          Length = 281

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/267 (34%), Positives = 148/267 (55%), Gaps = 20/267 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L+ + + P K +GQNFL+D NIL+ IA++ G+  G+ V+E+G G G LT+ L   G
Sbjct: 17  VRDLLTRHGLRPTKSLGQNFLIDGNILRAIAQAGGAAPGVPVLEVGPGLGVLTRELAARG 76

Query: 70  ARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           A  V  +EKD++  P+L + ++ Q    ++++  DAL+ D+    ++ +  R+IANLPY 
Sbjct: 77  A-HVTALEKDERLRPVLAETLAGQD---VQVVWGDALEFDYA---SLPAGTRVIANLPYY 129

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I   LL  ++ A    P   S T+L QKEV  R+ A+    +YG LS L         + 
Sbjct: 130 ITGPLLARFMQA----PGIISATVLVQKEVAGRLAARPGEDNYGFLSALAALYGTVQHVR 185

Query: 189 DISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--RLG 245
           D+    F P+P VTS+V+        P P    +  K  + A   RRKTLR +L+    G
Sbjct: 186 DVPKGAFLPAPDVTSSVVRLDFDRARPAPE--PAFLKFVEAALHHRRKTLRNNLRLAGFG 243

Query: 246 GENL---LHQAGIETNLRAENLSIEDF 269
           GE +   L  AG+  ++RAE++ +ED 
Sbjct: 244 GEAVGEALMAAGLRPDVRAEDVPLEDL 270


>gi|227497769|ref|ZP_03927955.1| dimethyladenosine transferase [Actinomyces urogenitalis DSM 15434]
 gi|226832812|gb|EEH65195.1| dimethyladenosine transferase [Actinomyces urogenitalis DSM 15434]
          Length = 310

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 141/286 (49%), Gaps = 22/286 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D   +++I  ++G  +G TV+E+G G G+LT  +L  G
Sbjct: 21  VRALSQALGVRPTKTLGQNFVHDAGTVRRIVRAAGVRNGETVLEVGPGLGSLTLAILEAG 80

Query: 70  ARKVIVIEKD---QQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS----PI 119
           A  VI +E D    Q  P+   ++ + P    RL ++  DAL +D      ++     P 
Sbjct: 81  A-SVIAVEIDPPLAQALPVT--VAQRMPEAAGRLRVVGADALSIDGPAALGLADGDPLPT 137

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R++ANLPYN+   +L   ++A    P  ES+T++ Q EV +R+ A   S  YG  SV   
Sbjct: 138 RLVANLPYNVAVPVLLTLLAAL---PSLESVTVMVQAEVADRLAAGPGSKVYGVPSVKAA 194

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLR 238
           W   A     I   VF+P P V S ++  +    P      E++  +   AF +RRKTLR
Sbjct: 195 WYASARRTITIGRTVFWPVPNVDSALVELVRREPPSTRASREAVFAVVDAAFAQRRKTLR 254

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           Q+L  L G        +  AGI+   R E L + DF  +   L D 
Sbjct: 255 QALAGLAGSPQAAEAAIRAAGIDPTRRGETLDVHDFAALAEALEDQ 300


>gi|148825174|ref|YP_001289927.1| dimethyladenosine transferase [Haemophilus influenzae PittEE]
 gi|148827743|ref|YP_001292496.1| dimethyladenosine transferase [Haemophilus influenzae PittGG]
 gi|229845712|ref|ZP_04465834.1| dimethyladenosine transferase [Haemophilus influenzae 6P18H1]
 gi|229846634|ref|ZP_04466742.1| dimethyladenosine transferase [Haemophilus influenzae 7P49H1]
 gi|166221669|sp|A5U9U3|RSMA_HAEIE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221670|sp|A5UH57|RSMA_HAEIG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|148715334|gb|ABQ97544.1| dimethyladenosine transferase [Haemophilus influenzae PittEE]
 gi|148718985|gb|ABR00113.1| dimethyladenosine transferase [Haemophilus influenzae PittGG]
 gi|229810727|gb|EEP46445.1| dimethyladenosine transferase [Haemophilus influenzae 7P49H1]
 gi|229811354|gb|EEP47061.1| dimethyladenosine transferase [Haemophilus influenzae 6P18H1]
 gi|309972298|gb|ADO95499.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae R2846]
          Length = 287

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF      E   
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|313635198|gb|EFS01504.1| dimethyladenosine transferase [Listeria seeligeri FSL N1-067]
          Length = 295

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 147/282 (52%), Gaps = 21/282 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLPY 131

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            + T ++   +  D  P   +S+T + QKEV +RI+A  ++  YG L++   +  +A + 
Sbjct: 132 YVTTPIILKLLH-DNIP--VDSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAELA 188

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG 245
           F +   VF P P V S VIH      P+    +     ++T+ +F +RRKTL  +L    
Sbjct: 189 FIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDEAFFFEVTRASFAQRRKTLWNNLASKF 248

Query: 246 GE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            E           L+  GI+   R E L I +F +++N L D
Sbjct: 249 PELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKLSNFLAD 290


>gi|25011861|ref|NP_736256.1| dimethyladenosine transferase [Streptococcus agalactiae NEM316]
 gi|77414160|ref|ZP_00790325.1| dimethyladenosine transferase [Streptococcus agalactiae 515]
 gi|33516935|sp|Q8E3D7|RSMA_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|24413402|emb|CAD47481.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159783|gb|EAO70929.1| dimethyladenosine transferase [Streptococcus agalactiae 515]
          Length = 290

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 146/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D  ++  N ++++  D LK D     + F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I      PF E   ++ Q+EV +RI+A  N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIEGKI--PFAE-FVVMMQREVADRISAMPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ AF  RRKTL  +L   
Sbjct: 185 SFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|154482621|ref|ZP_02025069.1| hypothetical protein EUBVEN_00288 [Eubacterium ventriosum ATCC
           27560]
 gi|149736521|gb|EDM52407.1| hypothetical protein EUBVEN_00288 [Eubacterium ventriosum ATCC
           27560]
          Length = 288

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 147/283 (51%), Gaps = 18/283 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           + K I++ Y    +K  GQNFL+D N+L+ I   +       V+EIG G G +TQ L   
Sbjct: 9   ATKEIINKYSFAFQKKFGQNFLIDSNVLESIIRGAEITKDDFVLEIGPGIGTMTQYLCE- 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANL 125
            AR+V+ +E D+   PIL+D  S++ N +E+I  D LKVD +      N   PI+++ANL
Sbjct: 68  AARQVVAVEIDKMLIPILEDTLSEYDN-VEVINQDVLKVDIKSLAEEKNNGKPIKVVANL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T ++      ++  P  +S+T++ QKEV +R+     S  YG LS+   +   A 
Sbjct: 127 PYYITTPIIMGLF--ESGVPI-DSITIMVQKEVADRMQTGPGSKDYGALSLAVQYYATAK 183

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLK-KITQEAFGKRRKTLRQSLKR 243
           ++ ++S   F P P V S VI    H  P +    E L  KI + +F +RRKTL   LK 
Sbjct: 184 VILNVSATCFMPRPNVDSAVIKLTRHKEPTVNVADEKLMFKIIRASFNQRRKTLVNGLKN 243

Query: 244 -----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
                   E +   + + G    +R E L++E+F  + N  T+
Sbjct: 244 SPELSFSKEQIVKAIEKIGKPETIRGEALTLEEFAELANAFTE 286


>gi|91776504|ref|YP_546260.1| dimethyladenosine transferase [Methylobacillus flagellatus KT]
 gi|118600878|sp|Q1GZB8|RSMA_METFK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91710491|gb|ABE50419.1| dimethyladenosine transferase [Methylobacillus flagellatus KT]
          Length = 255

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/264 (36%), Positives = 143/264 (54%), Gaps = 15/264 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K + KK  GQNFL D  I+  + ++        ++EIG G G +TQ LL  L    V+ I
Sbjct: 2   KHVAKKRFGQNFLTDRAIINSLIDAIAPQPQDCMVEIGPGLGAMTQPLLERLQHLHVVEI 61

Query: 77  EKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           ++D     I++ +   +P ++L I   DALK +F    NIS  +R++ NLPYNI T +LF
Sbjct: 62  DRD-----IIQWMQGHYPQDKLTIYASDALKFNFG---NISDRLRVVGNLPYNISTPILF 113

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +  D  P   + +  + QKEV ER+ A  +S  YGRLSV+  +R     +  + P  F
Sbjct: 114 HLL--DNVPHIID-MHFMLQKEVVERMVAAPSSAAYGRLSVMLQYRLHMEYLLTVPPEAF 170

Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S  +  +P+ + P P   E+ L +I   AF +RRKTLR +LK L  +      
Sbjct: 171 DPAPKVESAFVRAVPYTVLPHPAKDEALLGRIVTAAFAQRRKTLRNTLKGLLDDTGFASL 230

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           GI+  LRAEN++   F  I N L 
Sbjct: 231 GIDPQLRAENIAPAGFVAIANYLA 254


>gi|126173221|ref|YP_001049370.1| dimethyladenosine transferase [Shewanella baltica OS155]
 gi|217974469|ref|YP_002359220.1| dimethyladenosine transferase [Shewanella baltica OS223]
 gi|166221700|sp|A3D188|RSMA_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807883|sp|B8EB35|RSMA_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|125996426|gb|ABN60501.1| dimethyladenosine transferase [Shewanella baltica OS155]
 gi|217499604|gb|ACK47797.1| dimethyladenosine transferase [Shewanella baltica OS223]
          Length = 268

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 149/286 (52%), Gaps = 27/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH-----LGH---TARKRFGQNFLTDGNVIDRIVGAISPDNHHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFF------PILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           + +       + V+E D+         P+LKD       +L I Q DAL+ DF +     
Sbjct: 53  EPVAE-AVDNLTVVELDRDLVERLHHHPVLKD-------KLTIHQGDALQFDFGQLSVPG 104

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +++  NLPYNI T L+F+      +    E++  + QKEV  R++A      YGRL+V
Sbjct: 105 KKMKVFGNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTV 161

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ PH F P+PKV S V+  +P+ + P PC  +  L+ +   AF  RR
Sbjct: 162 MAQYFCQVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFPCKDVTVLRHLCTTAFNMRR 221

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTLR +LK +  ++   Q GI+++ R E +S++ +  + N++ D +
Sbjct: 222 KTLRNNLKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267


>gi|260912726|ref|ZP_05919212.1| dimethyladenosine transferase [Pasteurella dagmatis ATCC 43325]
 gi|260633104|gb|EEX51269.1| dimethyladenosine transferase [Pasteurella dagmatis ATCC 43325]
          Length = 288

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 150/288 (52%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D N+++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDDNVIQGIVSAIYPQKDQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS--- 116
           + +  L    + V+E D+     L+     HP   +++ +I+ DA++ DF + +  +   
Sbjct: 53  EPVGDL-VDHLTVVELDRDLAERLR----HHPFLHHKITVIETDAMQFDFGQLYQEAKLA 107

Query: 117 ---SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKNQKMRVFGNLPYNISTPLMFHLFK---YHDCIQDMHFMLQKEVVKRLCAGPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  +PH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPTAFKPAPKVDSAVVRLVPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L + GI+   RAENLSI D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFTAEQLTELGIDLTARAENLSIADYARLANWLADN 272


>gi|323350567|ref|ZP_08086229.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66]
 gi|322123249|gb|EFX94934.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66]
          Length = 290

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKVD  ++     N   
Sbjct: 61  TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RRK
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVEVQDEKFFFKVSKASFVHRRK 235

Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G++          L +A +  ++R E LS+E+F R+ + L
Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADAL 285


>gi|86140929|ref|ZP_01059488.1| dimethyladenosine transferase [Leeuwenhoekiella blandensis MED217]
 gi|85832871|gb|EAQ51320.1| dimethyladenosine transferase [Leeuwenhoekiella blandensis MED217]
          Length = 285

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/280 (36%), Positives = 151/280 (53%), Gaps = 18/280 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69
           K   S   +  KK++GQ+FL D +I KKIAE+  S DG + V+EIG G G LT+ LL   
Sbjct: 10  KKTASEDPVKAKKHLGQHFLKDESIAKKIAETL-SYDGYSEVLEIGPGTGVLTKYLLRKD 68

Query: 70  ARKVIVIEKDQQFFPILK-DISSQHPNRLE-----IIQDDALKVDFEKFFNISSPIRIIA 123
           +  V  ++ D +    L      +HP  +E     +++ D LK D  K F       I  
Sbjct: 69  SN-VTAMDLDSESIVYLNHSFPLEHPQLMEGCTLNVVEADFLKFDLSKLFG-DQAFAITG 126

Query: 124 NLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           N PYNI T+++F  +   D  P F    + +FQKEV +RI  ++ S  YG LSVL     
Sbjct: 127 NFPYNISTQIVFKMLEWRDQVPEF----SGMFQKEVAQRICEKEGSKAYGILSVLAQAFY 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
            A  +F + P VF P PKV S V+     P+   + C  ++L K+ + AF +RRKTLR S
Sbjct: 183 DAEYLFTVPPGVFNPPPKVDSGVLRLTRKPNYKDLACDPDALYKVVKMAFQQRRKTLRNS 242

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK+L   +   ++ I  N+R E LS+E F ++T  +T+++
Sbjct: 243 LKQLELSDAFRESEI-FNMRPEQLSVEAFIKLTQDITNDK 281


>gi|301155574|emb|CBW15042.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus parainfluenzae T3T1]
          Length = 287

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 151/288 (52%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NIS 116
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF + +   N++
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGELYTKENLA 107

Query: 117 SP---IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAGPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI  N RAENL+I D+ R+ N LTDN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIGLNARAENLAIADYARLANWLTDN 272


>gi|89075559|ref|ZP_01161964.1| dimethyladenosine transferase [Photobacterium sp. SKA34]
 gi|89048699|gb|EAR54271.1| dimethyladenosine transferase [Photobacterium sp. SKA34]
          Length = 274

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 137/263 (52%), Gaps = 13/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  VIE D+ 
Sbjct: 13  RKRFGQNFLKDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTVIELDRD 71

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP+   +L I Q DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 72  LAERLEN----HPDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMFHIF 127

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    E +  + QKEV  R+ A   S  YGRL+V+  +  +   + ++ P  F P+
Sbjct: 128 E---FHKDVEDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESFVPA 184

Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P+ + P PC  L+ L ++ +E F +RRKT+R   K L     L   G+ 
Sbjct: 185 PKVDSAVVRLTPYEVLPFPCTNLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEALGVN 244

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              R EN+++E F  + N L  N
Sbjct: 245 PGHRPENITVEQFVAMANWLDAN 267


>gi|163750059|ref|ZP_02157302.1| dimethyladenosine transferase [Shewanella benthica KT99]
 gi|161330116|gb|EDQ01098.1| dimethyladenosine transferase [Shewanella benthica KT99]
          Length = 272

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 143/264 (54%), Gaps = 13/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D N++ +I  +    +   ++EIG G G LT+ +      K+ V+E D+ 
Sbjct: 12  RKRFGQNFLTDHNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAE-SIDKLTVVELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+    +HP   ++LEI Q DAL  DF +       ++I  NLPYNI T L+F+  
Sbjct: 71  LVARLQ----KHPTLKHKLEIHQGDALNFDFSQLIEEGKELKIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    +++  + QKEV  R++A   +  YGRL+V+  +  +   + ++ P  F P+
Sbjct: 127 Q---FAEHIKNMHFMLQKEVVLRLSATPGTKAYGRLTVMAQYHCQVMPVLEVPPESFTPA 183

Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P PC  ++ L+ +T  AF  RRKTLR +LK +  +       I+
Sbjct: 184 PKVDSAVVRLVPYKQKPWPCKDVDFLRHMTTTAFSMRRKTLRNNLKHIISDEEFLSLNID 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
           ++LR E +S+E +  + N+L D +
Sbjct: 244 SSLRPEQISVEQYVAMANMLLDKK 267


>gi|86516095|gb|ABC97698.1| KsgA [Shigella flexneri]
          Length = 256

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 136/262 (51%), Gaps = 18/262 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83
           GQNFL D  ++  I  +     G  ++EIG G   LT+    +G R  ++ VIE D+   
Sbjct: 3   GQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLA 59

Query: 84  PILKDISSQHP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139
             L+     HP    +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S
Sbjct: 60  ARLQ----THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P P
Sbjct: 116 ---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPP 172

Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+ 
Sbjct: 173 KVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDP 232

Query: 258 NLRAENLSIEDFCRITNILTDN 279
            +RAEN+S+   C++ N L +N
Sbjct: 233 AMRAENISVAQDCQMANYLAEN 254


>gi|227877971|ref|ZP_03995975.1| dimethyladenosine transferase [Lactobacillus crispatus JV-V01]
 gi|256844351|ref|ZP_05549837.1| dimethyladenosine transferase [Lactobacillus crispatus 125-2-CHN]
 gi|256849246|ref|ZP_05554679.1| dimethyladenosine transferase [Lactobacillus crispatus MV-1A-US]
 gi|312978360|ref|ZP_07790102.1| dimethyladenosine transferase [Lactobacillus crispatus CTV-05]
 gi|227862441|gb|EEJ69956.1| dimethyladenosine transferase [Lactobacillus crispatus JV-V01]
 gi|256613429|gb|EEU18632.1| dimethyladenosine transferase [Lactobacillus crispatus 125-2-CHN]
 gi|256714022|gb|EEU29010.1| dimethyladenosine transferase [Lactobacillus crispatus MV-1A-US]
 gi|310894703|gb|EFQ43775.1| dimethyladenosine transferase [Lactobacillus crispatus CTV-05]
          Length = 294

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 24/284 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D   +  I E++G      VIEIG G G+LT+ LL  GA
Sbjct: 14  QAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFE----KFFNISSPIR 120
            KV   E D     IL     K I  Q   +R ++I  D LK DF+     FF+ + PI+
Sbjct: 74  -KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDVLKADFKVDISDFFDFTKPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ AQ  S  YG L++    
Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPGSKEYGPLTISVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237
                +   +S + F P PKV S+V+   P L   P  +E+ K    + +  F +RRKTL
Sbjct: 190 EMNVKLALQVSHNSFMPRPKVDSSVVVLTP-LKEKP-AIENRKHFIWVVKMCFSQRRKTL 247

Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +LK L       + L  + G+   +R E L+I+ F +I + +
Sbjct: 248 NNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291


>gi|320335301|ref|YP_004172012.1| ribosomal RNA small subunit methyltransferase A [Deinococcus
           maricopensis DSM 21211]
 gi|319756590|gb|ADV68347.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus
           maricopensis DSM 21211]
          Length = 282

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 150/276 (54%), Gaps = 17/276 (6%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            +++ ++  + I   K +GQNFL+D N+L+ IA++ G+  G++V+E+G G G LT+ +  
Sbjct: 13  RTVRDLMQRHGIRATKSLGQNFLVDGNVLRSIADAGGAASGVSVLEVGPGLGVLTREVAE 72

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GA  V+ +EKD++  P+L +  +     +E++  DALK D+++   +    R+IANLPY
Sbjct: 73  RGA-HVVTLEKDERLRPVLAETLAGLD--VEVVWGDALKFDYDR---LPDGTRVIANLPY 126

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T LL  ++++        S T+L Q+EV ER+ A+     YG +S L     +  ++
Sbjct: 127 YISTALLSKFMAS----ARIVSATVLVQREVAERLAAKPGEDAYGFMSALAALHGRVRIV 182

Query: 188 FDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            D+    F P+P VTS+V+   F    +        L ++ + A   RRKT+R +L+  G
Sbjct: 183 RDVPKGAFIPAPDVTSSVVRLDFTGFEDSGQKPDARLIRLMEAALHHRRKTMRNNLRMAG 242

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 E  L   G+  ++RAE++++ D  R    L
Sbjct: 243 FDAGAVEQALETVGLRADVRAEDVALRDMHRFAQAL 278


>gi|319760270|ref|YP_004124208.1| dimethyladenosine transferase [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038984|gb|ADV33534.1| dimethyladenosine transferase [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 269

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/270 (37%), Positives = 148/270 (54%), Gaps = 14/270 (5%)

Query: 16  HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           HYK  II KK+ GQ FL D NI+  I          T+IEIG G G LTQ +L +    +
Sbjct: 5   HYKNHIIKKKW-GQIFLTDQNIINSIINIFQPQHKQTIIEIGPGLGALTQPILNV-VDFL 62

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGT 131
           IVIE+D Q     K   + +  +L+I   D +K++F     + S   IR+I NLPYNI T
Sbjct: 63  IVIERDPQL--TQKLFQNFNTKKLKIFNTDVMKINFFNLIPLKSNQKIRLIGNLPYNIAT 120

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +L+ +      +      +  + QKEVG+RI AQ NS  YGRLS++T +  + +   ++S
Sbjct: 121 QLIVHLFK---YTKIIYDMHFMLQKEVGKRIIAQPNSKEYGRLSIMTQYHYQVSSRLEVS 177

Query: 192 PHVFFPSPKVTSTVIHFIPHLN--PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
              F P PKV S +I F P+    P P   +  L  +T+ AF +RRK ++ SL  L    
Sbjct: 178 KQSFIPIPKVESMIIQFTPYHAHFPYPIVDIRLLSFLTKIAFHQRRKIIKNSLSSLFNTK 237

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            + + G++T LR+ENL+I+ FC +  IL +
Sbjct: 238 EMQKCGLDTTLRSENLTIQQFCMLAEILHN 267


>gi|319745733|gb|EFV98030.1| dimethyladenosine transferase [Streptococcus agalactiae ATCC 13813]
          Length = 290

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 145/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D     + F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLRDFDN-VQVVNKDILKADLQTQIQAFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A  N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAMPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ AF  RRKTL  +L   
Sbjct: 185 SFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|327262022|ref|XP_003215825.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
           [Anolis carolinensis]
          Length = 345

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 145/290 (50%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  ++  +K+   K + QNFLLDL +  KIA S+G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIGEVIKLFKLKAVKQLSQNFLLDLRLTDKIARSAGNLKDAHVCEVGPGPGGITRAILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119
           G  +++++EKD +F P L+ +S   P ++ ++  D L     + F         +    I
Sbjct: 77  GVAELLLVEKDPRFIPGLQMLSEAAPGKVRVVHGDILTYKLGQAFPNHLIKNWEDDPPDI 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    LTL FQKEVGER+TA   +    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISKRDGPFRYGRTQLTLTFQKEVGERLTASTGTRQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S+++ +       F I    F P P V  TV+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SIMSQYLCTVHKCFTIPGKAFVPKPDVDVTVVHFTPLVQPKIEQPFKLVEKVVQSVFQFR 256

Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK     ++ L          E +L  A ++  LR   LS+  F  + ++
Sbjct: 257 RKYCHHGIRILFPEATRLEKAEQMLMLADVDPTLRPTQLSMFHFKNLCDV 306


>gi|197101331|ref|NP_001126887.1| dimethyladenosine transferase 1, mitochondrial [Pongo abelii]
 gi|75054716|sp|Q5R4V9|TFB1M_PONAB RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|55733044|emb|CAH93207.1| hypothetical protein [Pongo abelii]
          Length = 343

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLLRVQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------SPI 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F+ S           +
Sbjct: 77  DVAELLVVEKDTRFVPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPDV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L+ L  E         LL  A ++  LR    SI  F  + ++
Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADVDPTLRPCQPSISHFKSLCDV 306


>gi|298345589|ref|YP_003718276.1| putative dimethyladenosine transferase [Mobiluncus curtisii ATCC
           43063]
 gi|298235650|gb|ADI66782.1| possible dimethyladenosine transferase [Mobiluncus curtisii ATCC
           43063]
          Length = 309

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 151/297 (50%), Gaps = 34/297 (11%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  +  + +  ++ P K  GQNF+ D   +++IA ++G   G TV+EIG G G+LT  LL
Sbjct: 6   ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV----DFEKFFNISSPI 119
            LG  KVI IE DQ+    L    +QH      L ++  DAL++    D E     ++P 
Sbjct: 66  ELGC-KVIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLELPAGWAAPH 124

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R++ANLPYN+ T LL +++      P  ES  ++ Q EV +R  A      YG  SV   
Sbjct: 125 RLVANLPYNVATPLLLHFLEV---LPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF---------IPHLNPIPCCL--ESLKKITQE 228
           W  +A   F +  +VF+P P V STV+ F            L P    L  E+++ + QE
Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKPSAEGLTDEAIETLRQE 241

Query: 229 -------AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
                  AF +RRKTLRQSL    G      NLL  AGI   LRAE LS+ DF +I 
Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAAGITPGLRAERLSVIDFTKIA 298


>gi|251793858|ref|YP_003008590.1| dimethyladenosine transferase [Aggregatibacter aphrophilus NJ8700]
 gi|247535257|gb|ACS98503.1| dimethyladenosine transferase [Aggregatibacter aphrophilus NJ8700]
          Length = 287

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D N+++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDNNVIQNIVAAIYPQSHQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113
           + +      ++ V+E D+     L+     HP    +L +I+ DA++ DF      E   
Sbjct: 53  EPVAE-QVERLTVLELDRDLAERLR----HHPFLHQKLSVIETDAMQFDFSGLYEQEHLA 107

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKMRVFGNLPYNISTPLMFHLFK---YHHIIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH + P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHAILPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L    I+ N RAENLSI D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSDLFLPENLTALNIDLNARAENLSIADYARLANWLADN 272


>gi|21672424|ref|NP_660491.1| dimethyladenosine transferase [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25090650|sp|Q8KA00|RSMA_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21623034|gb|AAM67702.1| dimethyladenosine transferase [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 274

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/265 (34%), Positives = 144/265 (54%), Gaps = 9/265 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P K   QNFL++ N++KKI +        T++EIG G G LT+ +  +   ++IVIE
Sbjct: 7   KHLPLKRFSQNFLINQNLIKKIVKFINPQLKQTLVEIGPGLGALTKPICNI-VDELIVIE 65

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGTRLLFN 136
            D      LK  S    ++L +   DAL  D+   F+  +  IRI  NLPY+I T LLF 
Sbjct: 66  IDLNLLNFLKKYSFY--SKLIVFCQDALIFDYLNLFYKKNKLIRIFGNLPYHISTSLLFC 123

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           +   +      + +  + QKEV ER+ A   +  YGRLS++  +     ++F+++   F 
Sbjct: 124 FFEKNK---IIQDMNFMLQKEVAERLIAFPGTKSYGRLSIIAQYYCNIKIIFNVASENFR 180

Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PK+ ST ++ +PH         ++ L  IT  AF KRRK LR SL ++  E +  +  
Sbjct: 181 PIPKIDSTFVNLVPHKKSPYFTHDIKVLSYITNLAFQKRRKILRHSLGKIFSEKIFLKLN 240

Query: 255 IETNLRAENLSIEDFCRITNILTDN 279
           ++  LRAENLSI  +C+++N + +N
Sbjct: 241 VDPKLRAENLSILQYCQLSNYIIEN 265


>gi|71909268|ref|YP_286855.1| dimethyladenosine transferase [Dechloromonas aromatica RCB]
 gi|119365019|sp|Q479U6|RSMA_DECAR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71848889|gb|AAZ48385.1| dimethyladenosine transferase [Dechloromonas aromatica RCB]
          Length = 255

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 137/263 (52%), Gaps = 17/263 (6%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           + +K  GQNFL+D  I+  I  +       TV+EIG G G +T+ L+      + VIE D
Sbjct: 5   VARKRFGQNFLVDQGIIAAIISAVDPKRDETVVEIGPGLGAITEPLMA-RVDHLHVIEID 63

Query: 80  QQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           +     LK    QH P R+ + + DAL  DF    +I   +R++ NLPYNI T LLF+  
Sbjct: 64  RDLIARLK---KQHTPERMTVHEGDALAFDFA---SIGKNLRLVGNLPYNISTPLLFHLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +      +  + QKEV ER+ A+  +  +GR+SV+  +R     + D+ P  F P 
Sbjct: 118 E---YVDVVHDMHFMLQKEVVERMVAEPGNADFGRMSVMLQYRFYLEWLIDVPPESFDPP 174

Query: 199 PKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           PKV S V+  IP   P+        E L ++   AF +RRK LR ++K L  +    + G
Sbjct: 175 PKVQSAVVRLIP--KPVSELNAKSQEKLSQVALTAFSQRRKMLRNTMKTLLSDAAFTELG 232

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           I+   R E++S+ED+ RI N L+
Sbjct: 233 IDPTCRPEDVSVEDYVRIANYLS 255


>gi|115529417|ref|NP_001070237.1| dimethyladenosine transferase 1, mitochondrial [Danio rerio]
 gi|115313290|gb|AAI24403.1| Zgc:153625 [Danio rerio]
 gi|182891088|gb|AAI65534.1| Zgc:153625 protein [Danio rerio]
          Length = 269

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/248 (36%), Positives = 128/248 (51%), Gaps = 15/248 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  I+  Y +  +K + QNFLLD  +  KI   +G+L+   V E+G GPG LT+ +L  
Sbjct: 17  TIGEIIKLYNLKAQKQLSQNFLLDTRLTDKIVRQAGNLNNAHVCEVGPGPGGLTRSILKA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119
           GA  ++V+EKD +F P L+ +S   P R+ I Q D L    E+ F  NI+         +
Sbjct: 77  GAADLLVVEKDMRFIPGLQLLSEAAPGRIRIAQGDILAYKLERRFPANITKTWEDDPPNL 136

Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+N+ T L+  W+   ++    F      LTL FQKE  ER+TA   S    RL
Sbjct: 137 HIIGNLPFNVSTPLIIKWLEQMSNRTGIFMFGRTRLTLTFQKEAAERLTASTGSRQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  + T     F I    F P P V   V+HF P   P I    + ++KI + AF  R
Sbjct: 197 SVMAQYLTTVKSCFTIPGQAFVPKPNVDVGVVHFTPLAQPQIQQPFKLVEKIVKNAFQFR 256

Query: 234 RKTLRQSL 241
           RK  R+ L
Sbjct: 257 RKHCRRGL 264


>gi|326794309|ref|YP_004312129.1| ribosomal RNA small subunit methyltransferase A [Marinomonas
           mediterranea MMB-1]
 gi|326545073|gb|ADZ90293.1| Ribosomal RNA small subunit methyltransferase A [Marinomonas
           mediterranea MMB-1]
          Length = 266

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 140/262 (53%), Gaps = 10/262 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D+ I+++I       +G  V+EIG G G LT+ +++   + + V+E D+ 
Sbjct: 10  RKRFGQNFLHDMGIIRRIVACIAPKEGQRVVEIGPGKGALTEGIIS-ATKSMDVVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
             PILK    ++P+ L + + DA+K DF +     + IR++ NLPYNI T L+F+ +  A
Sbjct: 69  LIPILKVNLFKYPD-LRVHEADAMKFDFRQLATEGN-IRVVGNLPYNISTPLIFHLLEQA 126

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D      + +  + QKEV +R+ A+     YGRLSV+  +      +F + P  F P PK
Sbjct: 127 DVI----DDMHFMLQKEVVDRLAARPGDSLYGRLSVMAQYFCSVESLFIVGPDSFDPPPK 182

Query: 201 VTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S ++   P+  L  +   L+ L+   +  F +RRKTLR + K       L    I+  
Sbjct: 183 VDSAIVRMTPYTTLPVVAHDLKGLEDTVRIGFQQRRKTLRNNYKGTLTAEELESIQIDPT 242

Query: 259 LRAENLSIEDFCRITNILTDNQ 280
           LR E L + DF RI N L + +
Sbjct: 243 LRPERLDVPDFVRIANYLHEKK 264


>gi|87119768|ref|ZP_01075665.1| rRNA (adenine-N6,N6)-dimethyltransferase [Marinomonas sp. MED121]
 gi|86165244|gb|EAQ66512.1| rRNA (adenine-N6,N6)-dimethyltransferase [Marinomonas sp. MED121]
          Length = 270

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 141/264 (53%), Gaps = 9/264 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  +++ I        G  ++EIG G G LTQ ++      + V+E D+ 
Sbjct: 10  RKRFGQNFLHDHGVIRNIVACIAPKKGQRIVEIGPGKGALTQGIIA-ATESMDVVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PILK    ++P  L I + DA+K DF +     + IR++ NLPYNI T L+F+ +S  
Sbjct: 69  LIPILKVNLFRYPE-LRIHEADAMKFDFSQLATEGN-IRVVGNLPYNISTPLIFHLLSQA 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 +++  + QKEV +R+ A+     YGRLSV+  +  +   +F + P  F P+PKV
Sbjct: 127 N---IIDNMHFMLQKEVVDRLAARPGDNLYGRLSVMAQYYCQVESLFVVGPESFDPAPKV 183

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++   P+     +   LE+L++  +  F +RRKTLR + K +   +      I+  L
Sbjct: 184 DSAIVRMTPYQEKPYLADSLETLERAVRLGFQQRRKTLRNNYKGILNNDDFDALDIDPGL 243

Query: 260 RAENLSIEDFCRITNILTDNQDIA 283
           R E L + DF +I N L DN++ +
Sbjct: 244 RPERLDVPDFVKIANYL-DNKEAS 266


>gi|329957566|ref|ZP_08298041.1| dimethyladenosine transferase [Bacteroides clarus YIT 12056]
 gi|328522443|gb|EGF49552.1| dimethyladenosine transferase [Bacteroides clarus YIT 12056]
          Length = 268

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 138/257 (53%), Gaps = 8/257 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ LL    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDACPKLPILEVGPGMGVLTQFLLP-KERTVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q  +   II+DD LK++ ++ F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     +   +F +S HVF P 
Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K++ +  F +RRKTLR S+K + G+       +  
Sbjct: 177 PKVKSAVIRMTRNDTRQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDLLF 236

Query: 258 NLRAENLSIEDFCRITN 274
           N R E LS+++F  +TN
Sbjct: 237 NKRPEQLSVQEFIELTN 253


>gi|332072170|gb|EGI82656.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41301]
          Length = 290

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N +  I+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLSIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFIHRRKTLWNNLTGY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G+           L QAG+  ++R E LS+ +F  + + L
Sbjct: 245 FGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADAL 285


>gi|160891201|ref|ZP_02072204.1| hypothetical protein BACUNI_03648 [Bacteroides uniformis ATCC 8492]
 gi|317481090|ref|ZP_07940169.1| dimethyladenosine transferase [Bacteroides sp. 4_1_36]
 gi|156859422|gb|EDO52853.1| hypothetical protein BACUNI_03648 [Bacteroides uniformis ATCC 8492]
 gi|316902803|gb|EFV24678.1| dimethyladenosine transferase [Bacteroides sp. 4_1_36]
          Length = 264

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 137/255 (53%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++      I ++E+G G G LTQ LL    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLKVAQDIADTVDVCPEIPILEVGPGMGVLTQFLLP-KERNVKVVELDY 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++   Q  +   II+DD LK++ ++ F    P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFG-GQPFVLTGNYPYNISSQIFFKMLEY 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   S  YG LSVL     K   +F +  HVF P PK
Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPPPK 178

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI  + +      C E L K++ +  F +RRKTLR S+K + G++      +  N 
Sbjct: 179 VKSAVICMMRNETHDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+++F ++TN
Sbjct: 239 RPEQLSVQEFIQLTN 253


>gi|89094173|ref|ZP_01167116.1| dimethyladenosine transferase [Oceanospirillum sp. MED92]
 gi|89081648|gb|EAR60877.1| dimethyladenosine transferase [Oceanospirillum sp. MED92]
          Length = 268

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 141/259 (54%), Gaps = 8/259 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+++I  S    +  T++EIG G G LT+ LL   A ++  IE D+ 
Sbjct: 11  RKRFGQNFLHDHGIIRRIIRSIAPHETDTMVEIGPGLGALTEELLA-EAGELDAIELDRD 69

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
             PIL+     + ++  I + DA+K DF +       +RI+ NLPYNI T+L+F+ +S A
Sbjct: 70  LPPILRTKFFSYGDKFRIHEADAMKFDFTQLRRSEKRLRIVGNLPYNISTQLIFHLLSHA 129

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D      E +  + QKEV +R+ A     +YGRL ++  +  K   +F + P  F P+PK
Sbjct: 130 DD----VEDMHFMLQKEVVDRMAAGPGENNYGRLGIMAQYFCKVESLFVVPPGAFNPAPK 185

Query: 201 VTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S +I   P+  L  +   +E L+ + + AF  RRKTLR +LK L     +    I+  
Sbjct: 186 VDSAIIRLTPYRELPYVADEVEQLQTVVRTAFNMRRKTLRNNLKPLLSAEEIEALNIDPG 245

Query: 259 LRAENLSIEDFCRITNILT 277
           LR E L I DF  I+N L+
Sbjct: 246 LRPEKLPISDFVAISNYLS 264


>gi|127511813|ref|YP_001093010.1| dimethyladenosine transferase [Shewanella loihica PV-4]
 gi|166221702|sp|A3QBA3|RSMA_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|126637108|gb|ABO22751.1| dimethyladenosine transferase [Shewanella loihica PV-4]
          Length = 269

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 149/286 (52%), Gaps = 27/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D N++ +I  +    +   ++EIG G   LT
Sbjct: 1   MSNKVH-----LGH---TARKRFGQNFLTDSNVINRIVGAISPDNDHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           + +      K+ V+E D+      Q  P LKD       +LEI Q DALK DF++     
Sbjct: 53  EPVAE-SIDKLTVVELDKDLVERLQTHPFLKD-------KLEIHQGDALKFDFKQLVEEG 104

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +++  NLPYNI T L+F+      +    E++  + QKEV  R++A   +  YGRL+V
Sbjct: 105 KQMKVFGNLPYNISTPLMFHLFE---FAEHIENMHFMLQKEVVLRLSAAPGTKAYGRLTV 161

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +P+   P PC  ++ L+ +   AF  RR
Sbjct: 162 MAQYFCQVMPVLEVPPGCFTPPPKVDSAVVRLVPYKEKPYPCKDVDLLRHLCTTAFNMRR 221

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTLR +LK+L  ++     GI+ ++R E ++++ +  + N L D +
Sbjct: 222 KTLRNNLKQLLNDDDFSALGIDASMRPEQITVQQYVAMANHLVDKR 267


>gi|330686078|gb|EGG97700.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU121]
          Length = 296

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 146/277 (52%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+ KI ++S   +   +IE+G G G+LT+ L    A
Sbjct: 13  RALLDQYGFDFKKSLGQNFLVDVNIINKIIDASDIDETTGIIEVGPGMGSLTEQLAK-HA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
           +KV+  E D +  P+LKD  + + N + II +D LK D      +       I ++ANLP
Sbjct: 72  KKVMSFEIDHRLIPVLKDTLAPYDN-VTIINEDILKADIATAVTEHLKDCDKIMVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  +  YG LS++T + T+ + 
Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYTETSK 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 188 VLTVPKTVFMPPPNVDSIVVKLMQRSTPLVDIDDEEAFFKLAKAAFAQRRKTINNNYQNF 247

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             E   H         +A I+   R E LSI+DF ++
Sbjct: 248 FKEGKQHKESILSWLEKANIDPRRRGETLSIQDFAQL 284


>gi|48976087|ref|NP_852139.2| dimethyladenosine transferase 1, mitochondrial [Rattus norvegicus]
 gi|47718050|gb|AAH70907.1| Transcription factor B1, mitochondrial [Rattus norvegicus]
 gi|149038492|gb|EDL92822.1| transcription factor B1, mitochondrial [Rattus norvegicus]
          Length = 345

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  + +   K + QNFLLDL +  KI   +GSL  + V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F  NI          +
Sbjct: 77  DIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISLKNGPFVYGRTKMTLTFQKEVAERLVATTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++  +      +F I    F P P+V   V+H +P + P I    + ++K+ Q  F  R
Sbjct: 197 SIMAQYLCNVEHLFTIPGKAFVPKPEVDVGVVHLMPLVQPKIKQPFKLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L  L  E         LL  A I+  LR  +LS+  F  + ++
Sbjct: 257 RKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDV 306


>gi|281345012|gb|EFB20596.1| hypothetical protein PANDA_016957 [Ailuropoda melanoleuca]
          Length = 345

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 145/297 (48%), Gaps = 26/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
              +++V+EKD +F P L+ +S   P +L+I+  D L    E+ F  S        P  +
Sbjct: 77  NVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+N+ T L+  W   +S    P  +    +TL FQKEV ER+TA   S    RL
Sbjct: 137 HIIGNLPFNVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +  I    F P P+V   V+ F P + P I    + ++K+ + AF  R
Sbjct: 197 SVMAQYLCDVQHILTIPGQAFVPKPEVDVGVVRFTPLVRPRIEQPFKLVEKVVENAFQFR 256

Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279
           RK   + L  L          E LL  A ++  L+   LS+  F   C +   + D 
Sbjct: 257 RKYCYRGLGMLFPEIQRVESTEKLLELADVDPTLQPSQLSVSHFKSLCHVYQKMCDE 313


>gi|269302858|gb|ACZ32958.1| dimethyladenosine transferase [Chlamydophila pneumoniae LPCoLN]
          Length = 277

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/277 (36%), Positives = 151/277 (54%), Gaps = 18/277 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT ++ +  L  +LS  +  PKK + QNFL+D NI+KKI  +S  +    V+EIG G G 
Sbjct: 1   MTRSSPAQ-LSRLLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L+  GA+ VI IEKD  F P L+++    P RLEII      +D  + +      R
Sbjct: 60  LTEELIAAGAQ-VIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYKTLGKGR 114

Query: 121 IIANLPYNIGTRLLFN-WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPY+I T LL   ++ A   P FW+++T++ Q EV  RI AQ     YG L++   
Sbjct: 115 VVANLPYHITTPLLTKLFLEA---PDFWKTVTVMVQDEVARRIVAQPGGKDYGSLTIFLQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236
           +       F +S   F+P P+V S VIH +     +P   E +     +T+ AF +RRK 
Sbjct: 172 FFADIHYAFKVSASCFYPKPQVQSAVIH-MKVKETLPLSDEEIPVFFTLTRTAFQQRRKV 230

Query: 237 LRQSLKRLGGENLLHQA----GIETNLRAENLSIEDF 269
           L  +LK L  +  + QA    G+  N+R E LS+ D+
Sbjct: 231 LANTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDY 267


>gi|332638745|ref|ZP_08417608.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Weissella cibaria KACC 11862]
          Length = 298

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 150/284 (52%), Gaps = 21/284 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ + I  KK +GQNFL D+NILK I  +        V+EIG G G LT+ L    A
Sbjct: 14  QAIMNQFGINTKKSLGQNFLTDINILKNIVAAGDVQKTDNVVEIGPGIGALTEQL-ARAA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIRIIANL 125
           ++V+  E D +  P+L    + + N + I+ +D LKVD EK F     ++++P++++ANL
Sbjct: 73  KQVVAFEIDDRLIPVLDHTMAPYDN-VTIVHNDILKVDLEKEFAKQFEDVTAPLKLVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L   + +      ++++ ++ QKEV +R++A+  +  YG L++   +R  A 
Sbjct: 132 PYYITTPILMQVLQSGIH---FDNIVVMMQKEVADRLSAEPGTKDYGSLTLAVQYRMNAK 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           + F +S   F P+P V S +I   P   L   P   + L ++ +  F  RRKTL  +L  
Sbjct: 189 LAFTVSRTAFVPNPNVDSAIISLTPREPLAIQPRDEKRLFELFKIGFVMRRKTLWNNLTT 248

Query: 244 LGGENLLHQAGIETNL---------RAENLSIEDFCRITNILTD 278
             G+    QA +   L         RAE LS+E F  + N L D
Sbjct: 249 AFGKGEAMQAKLTAALAAIDLDPRTRAEKLSLERFVELHNALFD 292


>gi|310825990|ref|YP_003958347.1| hypothetical protein ELI_0367 [Eubacterium limosum KIST612]
 gi|308737724|gb|ADO35384.1| hypothetical protein ELI_0367 [Eubacterium limosum KIST612]
          Length = 285

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 149/283 (52%), Gaps = 24/283 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ IL+ Y +   K  GQNFL+D NI++KI E+       TV+EIG G G +TQ+L    
Sbjct: 10  IEGILNKYDLHFNKRYGQNFLIDENIVRKIVEAGNVHKNDTVLEIGPGIGTMTQVLAE-A 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLP 126
           A KV  +E D++  P+L   + +  N +EIIQ D LK D       +   +P++I+ANLP
Sbjct: 69  AGKVYSVEIDKKLIPVLAK-TLEDCNNVEIIQGDILKTDIPGLLRTNLQKNPLKIVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++  ++ ++  P   E +T + QKEVGER+ A+  +  YG L++   +  +  +
Sbjct: 128 YYVTTPIIMGFLESE-LP--IEQMTFMIQKEVGERLCAEPGTKAYGSLTIAAQFYAETEI 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLK 242
            F +   VF P PKV S V+         P    S KK    I + +F  RRKTL   L+
Sbjct: 185 SFYVPAAVFMPRPKVDSIVVTLKKRAE--PAIRVSDKKLFFQIVKASFLNRRKTLINGLQ 242

Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                   RL   N L + GI   +R E L+ EDF R+ N L+
Sbjct: 243 MNTDYSKERL--LNALEKCGIAPGVRGETLTGEDFARLANTLS 283


>gi|224367389|ref|YP_002601552.1| KsgA [Desulfobacterium autotrophicum HRM2]
 gi|259494248|sp|C0QFJ2|RSMA_DESAH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|223690105|gb|ACN13388.1| KsgA [Desulfobacterium autotrophicum HRM2]
          Length = 284

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 145/277 (52%), Gaps = 21/277 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L   +++ +K +GQNFL D N  + I   +G  D   V+EIG G G LT     L AR 
Sbjct: 7   LLKKQQLMARKELGQNFLSDPNAARMIVTKAGISDQDRVLEIGPGLGALTIPAAKL-ARD 65

Query: 73  VIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           ++ +EKD +   IL +++  +    +E+I +D L  D    F     I +I NLPYNI +
Sbjct: 66  LVAVEKDTRLAGILMEELKRESIENVELINNDILHQDLNTLFR-GEKIIVIGNLPYNISS 124

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           ++LF  +         +   L+FQKE+ ERI+A      YGRLSV+  + +    + D+ 
Sbjct: 125 QVLFMLVENRH---LIKRAVLMFQKELTERISASPGGRDYGRLSVVMQYCSTVKKIADLP 181

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGE- 247
           PH+FFP P V S VI  +      P   E    L K+ + AF KRRKTLR SL   GGE 
Sbjct: 182 PHLFFPKPAVDSRVIE-VNFFETTPYSGERERFLFKVIKAAFSKRRKTLRNSLA--GGEL 238

Query: 248 --------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
                    +L  A I+   RAE LS+E++ R+++ L
Sbjct: 239 DIDTKVSAKILETAEIDPVRRAETLSVEEYSRLSDAL 275


>gi|90580799|ref|ZP_01236602.1| dimethyladenosine transferase [Vibrio angustum S14]
 gi|90438067|gb|EAS63255.1| dimethyladenosine transferase [Vibrio angustum S14]
          Length = 274

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 136/263 (51%), Gaps = 13/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  VIE D+ 
Sbjct: 13  RKRFGQNFLKDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTVIELDRD 71

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP+   +L I Q DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 72  LAERLEN----HPDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMFHIF 127

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    E +  + QKEV  R+ A   S  YGRL+V+  +  +   + ++ P  F P+
Sbjct: 128 E---FHKDVEDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESFVPA 184

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P+   P PC  L+ L ++ +E F +RRKT+R   K L     L   G+ 
Sbjct: 185 PKVDSAVVRLTPYETLPYPCTSLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEALGVN 244

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              R EN+++E F  + N L  N
Sbjct: 245 PGNRPENITVEQFVAMANWLDAN 267


>gi|82701652|ref|YP_411218.1| dimethyladenosine transferase [Nitrosospira multiformis ATCC 25196]
 gi|119365040|sp|Q2YBP5|RSMA_NITMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|82409717|gb|ABB73826.1| dimethyladenosine transferase [Nitrosospira multiformis ATCC 25196]
          Length = 259

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 142/259 (54%), Gaps = 17/259 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKD 79
           P++  GQNFL+D   +  I  +        ++EIG G G LTQ LL +L    V+ I++D
Sbjct: 5   PRRRFGQNFLVDSQTVTDIVHALHPRREDVMVEIGPGLGALTQPLLQSLEHLHVVEIDRD 64

Query: 80  QQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
                I+K + ++    RL + + DAL+ DF    ++   +R++ NLPYNI T LLF+  
Sbjct: 65  -----IVKRLRNEFSAKRLTVHEGDALEFDFS---SLGESLRVVGNLPYNISTPLLFHL- 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +      +  + QKEV  R+ A+ ++  YGRLSV+   R +   +F + P  F P 
Sbjct: 116 --SRFTDHLRDMHFMLQKEVVARMVAKPSTSDYGRLSVMLQCRFEMEQLFIVPPECFHPP 173

Query: 199 PKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLK-RLGGENLLHQAGI 255
           PKV S V+  IP   P I    E L  +I   AF +RRK LR +L+  L GE+ L + GI
Sbjct: 174 PKVQSAVVRMIPLKKPLIEASQEKLFAEIVSAAFSQRRKILRNTLRDYLTGEDYL-KLGI 232

Query: 256 ETNLRAENLSIEDFCRITN 274
           ++NLRAENLSI  +  ITN
Sbjct: 233 DSNLRAENLSITQYVAITN 251


>gi|284008564|emb|CBA75122.1| dimethyladenosine transferase [Arsenophonus nasoniae]
          Length = 241

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 126/230 (54%), Gaps = 14/230 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106
            ++EIG G G LT + ++     + V+E D+     L    + HP    +L IIQ+DA+ 
Sbjct: 12  AIVEIGPGLGALT-LPVSEHIENMTVVELDRDLAARL----AAHPALSAKLTIIQNDAMT 66

Query: 107 VDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
           +DF         P+R   NLPYNI T L+F+     T+      +  + QKEV  R+ A 
Sbjct: 67  IDFGAIAKEKGQPLRAFGNLPYNISTPLMFHLF---TYTNAIADMNFMLQKEVVNRLVAG 123

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLK 223
            N+  YGRLSV+  +  +   +  + P  F P+PKV S V+  IPH  NP P C ++ L 
Sbjct: 124 PNTKAYGRLSVMAQYYCQIIPILAVPPSAFTPAPKVDSAVVRLIPHQRNPYPICDVKLLS 183

Query: 224 KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +IT +AF +RRKT+R SL  L       Q GI+ N RAEN+S+E++C++ 
Sbjct: 184 RITTQAFNQRRKTIRNSLSDLFSVQDFEQLGIDPNCRAENISVENYCKLA 233


>gi|312792586|ref|YP_004025509.1| dimethyladenosine transferase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179726|gb|ADQ39896.1| dimethyladenosine transferase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 282

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 151/270 (55%), Gaps = 13/270 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L ++L  Y + P K +GQNFL+D N+++KI   S  ++G  V+EIGAGPG LT + L  
Sbjct: 9   ELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFS-QVEGKEVVEIGAGPGTLT-VYLAK 66

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A+KV  +E D++   +LK++  Q  + ++I+  D L+++ +   N  + + I+ NLPY 
Sbjct: 67  TAQKVFAVEIDKKILNVLKEVC-QVISNVQIVNSDFLELNVKDLTN-GNKVYIVGNLPYY 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + +++LF            E  T++ QKEV +R+ A+  +  YG L+V   +  +    F
Sbjct: 125 VTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIEDYF 181

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR---LG 245
            +S +VF+P P+V S V+     +       ++  KI    F  RRKT+  +L     + 
Sbjct: 182 YVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKNFFKIVHACFSTRRKTILNALSNQLDIA 241

Query: 246 GENL---LHQAGIETNLRAENLSIEDFCRI 272
            + L   +H AG++ NLRAE+LS++D+ R+
Sbjct: 242 KDELKKIIHMAGLDENLRAEDLSLDDYIRL 271


>gi|166031341|ref|ZP_02234170.1| hypothetical protein DORFOR_01028 [Dorea formicigenerans ATCC
           27755]
 gi|166028746|gb|EDR47503.1| hypothetical protein DORFOR_01028 [Dorea formicigenerans ATCC
           27755]
          Length = 292

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 153/289 (52%), Gaps = 21/289 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  ++++ IL  Y    +K  GQNFL+D ++L+KI  ++G      V+EIG G G +
Sbjct: 5   TLGNPQNTIE-ILQKYHFNFQKKFGQNFLIDTHVLEKIISAAGITKDDMVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    A KV  +E D+   PIL+D  S++ N + +I DD LKVD        N   P
Sbjct: 64  TQYLAE-AAGKVAAVEIDKNLIPILEDTLSEYDNVM-VINDDVLKVDIRGLVEKENGGRP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPY I T ++      +   P  ES+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 VKVVANLPYYITTPIIMGLFEGNV--PV-ESITVMVQKEVADRMQTGPGNKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235
            +     ++ ++ P+ F P PKV S VI    H  P P  +++ K    I + +F +RRK
Sbjct: 179 QYYADPYIVANVPPNCFMPRPKVGSAVIRLTRHAAP-PVKVDNEKWMFDIIRASFNQRRK 237

Query: 236 TLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
           TL   L      +L        + + G   ++R E+LS+E+F  ++N L
Sbjct: 238 TLANGLSNSDKIDLPKDVITEAIAKLGKGESVRGESLSLEEFAALSNDL 286


>gi|262275064|ref|ZP_06052875.1| dimethyladenosine transferase [Grimontia hollisae CIP 101886]
 gi|262221627|gb|EEY72941.1| dimethyladenosine transferase [Grimontia hollisae CIP 101886]
          Length = 268

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 140/264 (53%), Gaps = 13/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G LT+ +      K+ V+E D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPQPGENLVEIGPGLGALTEPV-AREVDKLSVVELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA+K DF +  +   P+RI  NLPYN+ T L+F+  
Sbjct: 71  LAERLRN----HPELADKLTIYEGDAMKFDFTQLSSDDKPLRIFGNLPYNVSTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S   +    + +  + QKEV  R+ A  NS  YGRL+V+  +  K   + ++ P  F P+
Sbjct: 127 S---FAGKVKDMHFMLQKEVVNRLAAGPNSKAYGRLTVMAQYYCKVVPVLEVPPSAFKPA 183

Query: 199 PKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +PH   P P   L+ L+++ +E F +RRKT+R   K L   + +   GI+
Sbjct: 184 PKVDSAVVRLVPHKELPHPTTSLKWLERVCREGFNQRRKTVRNCYKSLIDADTMESLGID 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
            + R E+L++  F  + N +  N 
Sbjct: 244 PSARPESLTLAQFVALANWMDANH 267


>gi|167766021|ref|ZP_02438074.1| hypothetical protein CLOSS21_00513 [Clostridium sp. SS2/1]
 gi|167712101|gb|EDS22680.1| hypothetical protein CLOSS21_00513 [Clostridium sp. SS2/1]
          Length = 285

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 155/289 (53%), Gaps = 19/289 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N  ++++ ++  Y    +K  GQNFL+D  +L+KI  ++       V+EIG G G 
Sbjct: 1   MKLGNPKNTIE-VIQKYDFDFQKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           +TQ L    AR+V+ +E D+   PIL D  S + N + I+  D LKVD  K     N   
Sbjct: 60  MTQYLAE-NAREVMAVEIDKNLIPILSDTLSAYDN-VSILNADILKVDIAKIVEEKNGGK 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P++++ANLPY I T ++     +       +S+T++ QKEV +R+ +   +  YG LS+ 
Sbjct: 118 PVKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQSGPGTKDYGALSLA 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRK 235
             +  +  ++ ++ P+ F P PKV S VI    + + PI    E L  ++ + +F +RRK
Sbjct: 175 VQYYAEPYVVANVPPNCFMPRPKVGSAVIRLTKYKDAPIKVTNEKLLFQLIRASFNQRRK 234

Query: 236 TLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
           TL+  +K  GG N         L +  +  ++R E L++E F +++NIL
Sbjct: 235 TLQNGIKNFGGLNFSKEQVAQALEEMELPASVRGEALTLEQFAQLSNIL 283


>gi|301783565|ref|XP_002927199.1| PREDICTED: mitochondrial dimethyladenosine transferase 1-like
           [Ailuropoda melanoleuca]
          Length = 351

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 145/297 (48%), Gaps = 26/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
              +++V+EKD +F P L+ +S   P +L+I+  D L    E+ F  S        P  +
Sbjct: 77  NVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+N+ T L+  W   +S    P  +    +TL FQKEV ER+TA   S    RL
Sbjct: 137 HIIGNLPFNVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +  I    F P P+V   V+ F P + P I    + ++K+ + AF  R
Sbjct: 197 SVMAQYLCDVQHILTIPGQAFVPKPEVDVGVVRFTPLVRPRIEQPFKLVEKVVENAFQFR 256

Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279
           RK   + L  L          E LL  A ++  L+   LS+  F   C +   + D 
Sbjct: 257 RKYCYRGLGMLFPEIQRVESTEKLLELADVDPTLQPSQLSVSHFKSLCHVYQKMCDE 313


>gi|299536734|ref|ZP_07050044.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZC1]
 gi|298727848|gb|EFI68413.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZC1]
          Length = 293

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 145/281 (51%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  Y    KK +GQNFL+D NIL+ I   +   +    IE+G G G LT+ L    A
Sbjct: 12  QEILKKYGFSFKKSLGQNFLIDPNILRNIVSHANLTENSGAIEVGPGIGALTEHL-ARSA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLP 126
           +KV+  E DQ+  P+L+D  S + N + II  D LK D EK      P    I ++ANLP
Sbjct: 71  KKVVSFEIDQRLLPVLEDTLSPY-NNVSIIHSDILKADVEKVIADEMPGIDDIMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   ++ D  P       ++ QKEV +RITA+  +  YG LS+   +  KA +
Sbjct: 130 YYVTTPILLKLLN-DRLP--IRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVKADI 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK-- 242
              +   VF P P V S VI  I H  P    ++   L  +T+ +F +RRKT+  +L+  
Sbjct: 187 AMTVPKTVFMPQPNVDSAVIRLIKHEEPPVKVIDEDFLFVVTRASFVQRRKTIYNNLQSG 246

Query: 243 ----RLGGENLLHQ---AGIETNLRAENLSIEDFCRITNIL 276
               +   +++L     A IE   R E LSI++F ++ + L
Sbjct: 247 LPNGKAQKDHILQALELANIEPTRRGETLSIQEFGKLADAL 287


>gi|262047261|ref|ZP_06020219.1| dimethyladenosine transferase [Lactobacillus crispatus MV-3A-US]
 gi|260572506|gb|EEX29068.1| dimethyladenosine transferase [Lactobacillus crispatus MV-3A-US]
          Length = 294

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 24/284 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D   +  I E++G      VIEIG G G+LT+ LL  GA
Sbjct: 14  QAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFE----KFFNISSPIR 120
            KV   E D     IL     K I  Q   +R ++I  D LK DF+     FF+ + PI+
Sbjct: 74  -KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDLLKADFKVDISDFFDFTKPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ AQ  S  YG L++    
Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPGSKEYGPLTISVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237
                +   +S + F P PKV S+V+   P L   P  +E+ K    + +  F +RRKTL
Sbjct: 190 EMNVKLALQVSHNSFMPRPKVDSSVVVLTP-LKEKP-AIENRKHFIWVVKMCFSQRRKTL 247

Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +LK L       + L  + G+   +R E L+I+ F +I + +
Sbjct: 248 NNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291


>gi|322386716|ref|ZP_08060340.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
 gi|321268998|gb|EFX51934.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
          Length = 290

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 147/284 (51%), Gaps = 20/284 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFLAE-SA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++  D LKVD  ++     N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ Q+EV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVKDEKFFFKVSKASFVHRRKTLWNNLTSH 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            G++          L QA +  ++R E L++ DF R+ + L + 
Sbjct: 245 FGKSEDTKAKLTAALEQAELSPSVRGEALTLADFARLADALKEQ 288


>gi|297582384|ref|YP_003698164.1| dimethyladenosine transferase [Bacillus selenitireducens MLS10]
 gi|297140841|gb|ADH97598.1| dimethyladenosine transferase [Bacillus selenitireducens MLS10]
          Length = 298

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 141/278 (50%), Gaps = 19/278 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL++ N+L+KI E++       VIEIG G G LT+    + A
Sbjct: 13  KAILERYGFSFKKSLGQNFLIEPNVLRKIVETAELSPDSGVIEIGPGIGALTEQSAKM-A 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           RKV+  E DQ+  PIL D  S +P+ +EI   D LK D      + F     + ++ANLP
Sbjct: 72  RKVLAYEIDQRLLPILADTLSLYPH-VEIRHGDVLKADVHADVREVFEADQDLAVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +  P     + ++ QKEV ERI A   S +YG LS+   +  +A +
Sbjct: 131 YYVTTPIMMKLLE-EKLP--VRVMVMMMQKEVAERIAADPGSKNYGSLSIAVQYYAEAKL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTL------- 237
           MF +   VF P P V S ++       P    L+      + Q AF +RRKTL       
Sbjct: 188 MFTVPKTVFVPQPNVDSAILRLTRRSEPPVDVLDEGFFFDVIQGAFTQRRKTLLNNLSVF 247

Query: 238 -RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            + SL +   +  L    I+   RAE +S+ +F RI++
Sbjct: 248 FKDSLSKPEVQAALEALEIDPKRRAETVSMAEFARISD 285


>gi|189468116|ref|ZP_03016901.1| hypothetical protein BACINT_04510 [Bacteroides intestinalis DSM
           17393]
 gi|189436380|gb|EDV05365.1| hypothetical protein BACINT_04510 [Bacteroides intestinalis DSM
           17393]
          Length = 271

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 141/259 (54%), Gaps = 12/259 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++     G+ V+E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDVCPGLPVLEVGPGMGVLTQFLVK-KERPVKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L++   ++P+ LE  II+DD LK++ ++ FN   P  +  N PYNI +++ F 
Sbjct: 63  DYESVAYLRE---EYPS-LEDNIIEDDFLKMNLQRLFN-GQPFVLTGNYPYNISSQIFFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P     T + QKEV ERI A   S  YG LS+L     +   +F +  HVF 
Sbjct: 118 MLDNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYRVEYLFTVHEHVFN 174

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S VI    +      C E L K++ +  F +RRKTLR S+K + G++      +
Sbjct: 175 PPPKVKSAVIRMTRNETQDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDV 234

Query: 256 ETNLRAENLSIEDFCRITN 274
             N R E LS++ F  +TN
Sbjct: 235 LFNKRPEQLSVQQFTDLTN 253


>gi|320449691|ref|YP_004201787.1| dimethyladenosine transferase [Thermus scotoductus SA-01]
 gi|320149860|gb|ADW21238.1| dimethyladenosine transferase [Thermus scotoductus SA-01]
          Length = 272

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 142/272 (52%), Gaps = 19/272 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L  + +   K +GQNFL+    L++I E++    G  V E+G G G LT+ L   G
Sbjct: 11  IRELLKRHGLFADKRLGQNFLVSEVHLRRIVEAAKPFTG-PVYEVGPGLGVLTRALAEAG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +V  IEKD +  P+L++     P RL  +  DAL   +E+    S    ++ANLPYNI
Sbjct: 70  A-QVTAIEKDLRLKPVLEETLKGLPVRL--VFADALAYPWEEVPENSL---LVANLPYNI 123

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+   +    +      L  L QKEV ER+ A+ N+P YG LS+   +  +A  +FD
Sbjct: 124 ATPLVTRLLRTGRF----ARLVFLVQKEVAERMVARPNTPSYGLLSLRVAYHAQAEKLFD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--- 246
           + P  FFP PKV S+++   P   P    L  L    + AF KRRKTL+ +L   G    
Sbjct: 180 LPPGAFFPPPKVVSSLVRLTPRKVPDDPALFQL---LEAAFSKRRKTLKNALTAAGYPKE 236

Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             E  L   G+  ++RAE L +  F R+ ++L
Sbjct: 237 EVEEALRSLGLPPDIRAEALDLSHFQRLKDLL 268


>gi|325697392|gb|EGD39278.1| dimethyladenosine transferase [Streptococcus sanguinis SK160]
          Length = 290

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N   
Sbjct: 61  TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLTQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ Q+EV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RRK
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRRK 235

Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G++          L ++ +  ++R E LS+E+F R+ + L
Sbjct: 236 TLWNNLTSCFGKSEETKGKLTAALERSELSPSVRGEALSLEEFARLADAL 285


>gi|292670425|ref|ZP_06603851.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541]
 gi|292647835|gb|EFF65807.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541]
          Length = 292

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 145/275 (52%), Gaps = 14/275 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL+ +++   K +GQNFL+D+ +++ I E++    G TV+EIG G G LTQ L   GAR 
Sbjct: 17  ILNAFRLRASKRLGQNFLIDVGVVRGIVEAAELAPGDTVLEIGPGIGTLTQGLAETGAR- 75

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIG 130
           V+ +E D++   +L +    + N + I+  D LK++  +   +    R  + ANLPY I 
Sbjct: 76  VVAVEIDKKLPRVLAETLKGYDN-VTIVPGDILKLNIPEILGLKEGERFKVAANLPYYIT 134

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +     P   E L  + QKEV  R+TA+  S  YG LS+   + T+  ++ D+
Sbjct: 135 TPIIMTLLE-QRLP--IERLVTMVQKEVAVRMTARPGSKDYGALSIAVQYFTEPRIVMDV 191

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245
            P  F P+P+VTS V+       P   P   +   ++ + AFG+RRK L  +L   G   
Sbjct: 192 PPRAFMPAPEVTSAVVACRVRETPAAAPADEKLFFRLIRAAFGQRRKMLLNALTGAGLTK 251

Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 L  AGI  N R E LS+ DF R+++ + D
Sbjct: 252 EMSRAGLSAAGIAENTRGEQLSLADFARLSDAVGD 286


>gi|194017982|ref|ZP_03056589.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061]
 gi|194010319|gb|EDW19894.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061]
          Length = 292

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL +I + +   D   VIEIG G G LT+ L    A
Sbjct: 12  KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAK-RA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           +KV   E DQ+  PIL D  S + N + II  D LK D     E+ F     + ++ANLP
Sbjct: 71  KKVTAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVGKVIEENFADCKEVMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +  P   + + ++ QKEV +R+ A  +S  Y  LS+   + T+A  
Sbjct: 130 YYVTTPIIMKLLE-ENLP--LKGIVVMLQKEVADRMAAVPSSKEYNSLSIAVQYYTEAKT 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSL--- 241
           +  +   VF P P V S VI       P       E   ++ + +FG+RRKTL  +L   
Sbjct: 187 VMVVPKTVFVPQPNVDSAVIKLTVRETPAVSVENDEFFFQLIRASFGQRRKTLMNNLMNN 246

Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                  ++  E  L  A I+   R E+LSIE+F R+ N+L
Sbjct: 247 LPDGKQHKVIIEEALQTADIDGKRRGESLSIEEFARLANVL 287


>gi|33242431|ref|NP_877372.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183]
 gi|33236942|gb|AAP99029.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183]
          Length = 277

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/277 (36%), Positives = 150/277 (54%), Gaps = 18/277 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT ++ +  L   LS  +  PKK + QNFL+D NI+KKI  +S  +    V+EIG G G 
Sbjct: 1   MTRSSPAQ-LSRFLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L+  GA+ VI IEKD  F P L+++    P RLEII      +D  + +      R
Sbjct: 60  LTEELIAAGAQ-VIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYTTLGKGR 114

Query: 121 IIANLPYNIGTRLLFN-WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPY+I T LL   ++ A   P FW+++T++ Q EV  RI AQ     YG L++   
Sbjct: 115 VVANLPYHITTPLLTKLFLEA---PDFWKTVTVMVQDEVARRIVAQPGGKDYGSLTIFLQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236
           +       F +S   F+P P+V S VIH +     +P   E +     +T+ AF +RRK 
Sbjct: 172 FFADIHYAFKVSASCFYPKPQVQSAVIH-MKVKETLPLSDEEIPVFFTLTRTAFQQRRKV 230

Query: 237 LRQSLKRLGGENLLHQA----GIETNLRAENLSIEDF 269
           L  +LK L  +  + QA    G+  N+R E LS+ D+
Sbjct: 231 LANTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDY 267


>gi|81871169|sp|Q811P6|TFB1M_RAT RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|28569596|gb|AAO42744.1| mitochondrial transcription factor b1 [Rattus norvegicus]
          Length = 345

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  + +   K + QNFLLDL +  KI   +GSL  + V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F  NI          +
Sbjct: 77  DIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISLKNGPFVYGRTKMTLTFQKEVAERLVATTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++  +      +F I    F P P+V   V+H +P + P I    + ++K+ Q  F  R
Sbjct: 197 SIMAQYLCNVEHLFTIPGKAFVPKPEVDVGVVHLMPLVQPKIKQPFKLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L  L  E         LL  A I+  LR  +LS+  F  + ++
Sbjct: 257 RKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDV 306


>gi|312085629|ref|XP_003144755.1| ribosomal RNA adenine dimethylase [Loa loa]
 gi|307760083|gb|EFO19317.1| ribosomal RNA adenine dimethylase [Loa loa]
          Length = 342

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 151/297 (50%), Gaps = 26/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           SLK  L  Y++  KK + QN+L+D+N+ +KI   +   +G  VIEIG GPG++T+ +L  
Sbjct: 13  SLKNFLYAYRLQAKKILSQNYLMDMNLTRKIVRQAVVKEGDYVIEIGPGPGSITRAILET 72

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR-------- 120
             R++ VIE D +F P L+ +      R+ I + D LK + E+ ++ +   R        
Sbjct: 73  NCRRLDVIEIDHRFIPPLEVLKEASEERMFIHRADILKTNIEQIWSQAGLERVAWEEDRL 132

Query: 121 ----IIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
               II NLP+NI + L+  ++         W      L L FQ EV ER+ +  +SP  
Sbjct: 133 PMAHIIGNLPFNIASPLIIKFLREMLYRQGPWSFGRIPLLLTFQMEVAERLCSPVDSPFR 192

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            R+S+++ + T+  ++F I    F PSPKV   V+ FIP  +P I    E ++K+ +  F
Sbjct: 193 ARISIMSAFVTEPKLLFQIPGRCFVPSPKVNVGVVRFIPRQDPLIKTSFEVVEKVCRRVF 252

Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             R+K + + ++ L  E        +LL +  I+    A  L +E F  I  +  ++
Sbjct: 253 NYRQKYVVKGIRSLYPEELAKNLADDLLRRCRIDPTTTAICLGVEQFADICYVYEEH 309


>gi|332522163|ref|ZP_08398415.1| dimethyladenosine transferase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313427|gb|EGJ26412.1| dimethyladenosine transferase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 290

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 145/281 (51%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N +++I  D LK D +     F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VQVINQDILKADLQTQIQGFENPELPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMVAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++     + P+    +     ++ +  F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMERRVEPLIKVQDEDFFFRVAKVGFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         EN L  AGI+ N+R E L+I +F ++ + L
Sbjct: 245 FGKSEETKKKLENALELAGIKANIRGEALTIAEFGKLADAL 285


>gi|93006282|ref|YP_580719.1| dimethyladenosine transferase [Psychrobacter cryohalolentis K5]
 gi|119365050|sp|Q1QAR8|RSMA_PSYCK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|92393960|gb|ABE75235.1| dimethyladenosine transferase [Psychrobacter cryohalolentis K5]
          Length = 287

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 145/277 (52%), Gaps = 13/277 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           + S+   L   K  P+K  GQNFL D +++++I ES        +IEIG G G LT+ LL
Sbjct: 8   AQSITNSLRAAKHQPRKRFGQNFLHDRSVIREIVESIRLERDDNLIEIGPGMGALTEPLL 67

Query: 67  T-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIAN 124
             + A  V+ +++D      ++  ++ HPN  EII+++A+ VD+ + + +    +R++ N
Sbjct: 68  AEVDAMTVVELDRDLADSLRIRIGANSHPN-FEIIKNNAMHVDYRELYSDERGKLRVVGN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI T +LF+ +S   +    E +  + QKEV ERITA   S  YGRLSV+  +    
Sbjct: 127 LPYNISTPILFHLLS---YADVIEDMHFMLQKEVVERITADVGSKTYGRLSVIMQYHCHT 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLK 242
             +  +    F P PKVTS V    PH + P+    E     + +E F  RRKTLR   K
Sbjct: 184 DYLLTVPRGAFNPPPKVTSAVFRLTPHIIKPVVAEDEEYFALVVRETFNHRRKTLRAIFK 243

Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITN 274
           +        E+      I+   R E LS++DF  ++N
Sbjct: 244 KSTLLPTLSEDDFAACAIDPQARPETLSVKDFVNLSN 280


>gi|224538112|ref|ZP_03678651.1| hypothetical protein BACCELL_03003 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520240|gb|EEF89345.1| hypothetical protein BACCELL_03003 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 271

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/259 (35%), Positives = 143/259 (55%), Gaps = 12/259 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +  G+ ++E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDACPGLPILEVGPGMGVLTQFLVR-KERPVKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L++   ++P+ LE  II+DD LK++ ++ F+   P  +  N PYNI +++ F 
Sbjct: 63  DYESVAYLRE---EYPS-LEDNIIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P     T + QKEV ERI A   S  YG LS+L     +   +F +  HVF 
Sbjct: 118 MLDNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYRVEYLFTVHEHVFN 174

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S VI    +      C E L K++ +  F +RRKTLR S+K + G++      +
Sbjct: 175 PPPKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDV 234

Query: 256 ETNLRAENLSIEDFCRITN 274
             N R E LS+++F  +TN
Sbjct: 235 LFNKRPEQLSVQEFISLTN 253


>gi|325955928|ref|YP_004286538.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Lactobacillus acidophilus 30SC]
 gi|325332493|gb|ADZ06401.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Lactobacillus acidophilus 30SC]
 gi|327182763|gb|AEA31210.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Lactobacillus amylovorus GRL 1118]
          Length = 294

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 20/280 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D   +  I ES+    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  RAIINRYFVKAKKNLGQNFLVDQAAILGIVESADIQPGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL------KDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120
            KV   E D     IL      K   +    R ++I  D LK +FE+    FF++S PI+
Sbjct: 74  -KVFAYEVDDSLPEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAVFFDMSKPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  +  YG L++    
Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGNKEYGPLTISVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239
                +  ++    F P PKV S V+   P    P     +    + +  F +RRKTL  
Sbjct: 190 EMNVKLALEVKSSSFMPRPKVDSAVVVLTPLAEKPAINDRKHFIWVVKMCFSQRRKTLNN 249

Query: 240 SLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITN 274
           +LK L  +N     L+ + G++  +R E+L+IE F +I +
Sbjct: 250 NLKTLIPDNDQRAALIKELGVDPRVRPEDLTIEQFIKIAS 289


>gi|301169266|emb|CBW28863.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae 10810]
          Length = 287

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 151/288 (52%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL + ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHNTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF---NIS 116
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF + +   N++
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGELYTKENLA 107

Query: 117 SP---IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|261867179|ref|YP_003255101.1| dimethyladenosine transferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412511|gb|ACX81882.1| dimethyladenosine transferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 287

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 144/288 (50%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D N+++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDNNVIQNIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113
           + +       + V+E D+     L+     HP    +  +I+ DA++ DF      E+  
Sbjct: 53  EPVAE-QVEHLTVLELDRDLAERLR----HHPFLNQKFTVIETDAMQFDFSALYEQEQLA 107

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFH---YHHIIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPVPKVDSAVVRLIPHATLPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +   L     L   GI+ N RAENLSI D+ R+ N L DN
Sbjct: 225 QRRKTLRNAFSGLFSAGNLTALGIDLNARAENLSIADYARLANWLADN 272


>gi|326319524|ref|YP_004237196.1| dimethyladenosine transferase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323376360|gb|ADX48629.1| dimethyladenosine transferase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 253

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 133/260 (51%), Gaps = 14/260 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+  LG   V+ +
Sbjct: 2   KHIPRKRFGQHFLADQAIIDAIVRAIAPAPGQPMVEIGPGLAALTQPLVERLGRLTVVEL 61

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSP-IRIIANLPYNIGTRLL 134
           ++D      L      H  +L++I+ D LKVDF     N+ +P IRI+ NLPYNI T +L
Sbjct: 62  DRD------LAQRLRGH-GQLDVIESDVLKVDFTAVAANLGTPRIRIVGNLPYNISTPIL 114

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +         E    + QKEV +R+ AQ  +  YGRLSV+  WR     +  + P  
Sbjct: 115 FHLLEHVD---VVEDQHFMLQKEVIDRMVAQPATSDYGRLSVMLQWRYAMEDVLFVPPES 171

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P+V S V+  +PH  P P     L+++ Q AF +RRK LR +L R   E       
Sbjct: 172 FDPPPRVDSAVVRMVPHATPAPVAPRLLEELVQVAFSQRRKLLRHTLGRW-LEARQFTGT 230

Query: 255 IETNLRAENLSIEDFCRITN 274
            +T  RAE + + D+  +  
Sbjct: 231 FDTQRRAEEVPVADYVALAQ 250


>gi|15618967|ref|NP_225253.1| dimethyladenosine transferase [Chlamydophila pneumoniae CWL029]
 gi|15836590|ref|NP_301114.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138]
 gi|16753057|ref|NP_445330.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39]
 gi|27151618|sp|Q9Z6K0|RSMA_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|4377394|gb|AAD19196.1| Dimethyladenosine Transferase [Chlamydophila pneumoniae CWL029]
 gi|7189706|gb|AAF38590.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39]
 gi|8979432|dbj|BAA99266.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138]
          Length = 277

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/277 (36%), Positives = 150/277 (54%), Gaps = 18/277 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT ++ +  L   LS  +  PKK + QNFL+D NI+KKI  +S  +    V+EIG G G 
Sbjct: 1   MTRSSPAQ-LSRFLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L+  GA +VI IEKD  F P L+++    P RLEII      +D  + +      R
Sbjct: 60  LTEELIAAGA-QVIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYKTLGKGR 114

Query: 121 IIANLPYNIGTRLLFN-WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPY+I T LL   ++ A   P FW+++T++ Q EV  RI AQ     YG L++   
Sbjct: 115 VVANLPYHITTPLLTKLFLEA---PDFWKTVTVMVQDEVARRIVAQPGGRDYGSLTIFLQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236
           +       F +S   F+P P+V S VIH +     +P   E +     +T+ AF +RRK 
Sbjct: 172 FFADIHYAFKVSASCFYPKPQVQSAVIH-MKVKETLPLSDEEIPVFFTLTRTAFQQRRKV 230

Query: 237 LRQSLKRLGGENLLHQA----GIETNLRAENLSIEDF 269
           L  +LK L  +  + QA    G+  N+R E LS+ D+
Sbjct: 231 LANTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDY 267


>gi|329117503|ref|ZP_08246220.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020]
 gi|326907908|gb|EGE54822.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020]
          Length = 290

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 150/283 (53%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL H+    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ +    A
Sbjct: 10  RAILEHHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFIAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PILKD      N ++++  D LK D +     F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILKDTLRDFDN-VQLVNQDILKADLQTQIKAFKNPELPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  D+  PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--DSKIPFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMDAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +   L ++++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMTRRDQPLVAVQDEDFLFRVSKASFVHRRKTLWNNLTSH 244

Query: 245 GGE------NL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
            G+      NL   L  + I  ++R E LSIE F ++ + L +
Sbjct: 245 FGKTEEIKANLTKALEISEISPSIRGEALSIEQFGKLADALKE 287


>gi|167764963|ref|ZP_02437084.1| hypothetical protein BACSTE_03355 [Bacteroides stercoris ATCC
           43183]
 gi|167697632|gb|EDS14211.1| hypothetical protein BACSTE_03355 [Bacteroides stercoris ATCC
           43183]
          Length = 265

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 137/257 (53%), Gaps = 8/257 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ LL    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDACPNLPILEVGPGMGVLTQFLLP-KERTVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q  +   II+DD LK++ ++ F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     +   +F +S HVF P 
Sbjct: 120 DNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K++ +  F +RRKTLR S+K + G+          
Sbjct: 177 PKVKSAVIRMTRNDTQQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDPLF 236

Query: 258 NLRAENLSIEDFCRITN 274
           N R E LS+++F  +TN
Sbjct: 237 NKRPEQLSVQEFIELTN 253


>gi|77412114|ref|ZP_00788438.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111]
 gi|77161821|gb|EAO72808.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111]
          Length = 290

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 146/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G LT+  L   A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTE-FLAENA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL    ++  N ++++  D LK D     + F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILAGTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A  N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAMPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ AF  RRKTL  +L   
Sbjct: 185 SFIVPRTVFVPAPNVDSVILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 245 FGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|257880094|ref|ZP_05659747.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933]
 gi|257882326|ref|ZP_05661979.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502]
 gi|257885523|ref|ZP_05665176.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501]
 gi|257891185|ref|ZP_05670838.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410]
 gi|258614573|ref|ZP_05712343.1| dimethyladenosine transferase [Enterococcus faecium DO]
 gi|260560297|ref|ZP_05832473.1| dimethyladenosine transferase [Enterococcus faecium C68]
 gi|293563099|ref|ZP_06677565.1| dimethyladenosine transferase [Enterococcus faecium E1162]
 gi|293567525|ref|ZP_06678870.1| dimethyladenosine transferase [Enterococcus faecium E1071]
 gi|294623379|ref|ZP_06702238.1| dimethyladenosine transferase [Enterococcus faecium U0317]
 gi|314940231|ref|ZP_07847404.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04]
 gi|314941710|ref|ZP_07848589.1| dimethyladenosine transferase [Enterococcus faecium TX0133C]
 gi|314947646|ref|ZP_07851055.1| dimethyladenosine transferase [Enterococcus faecium TX0082]
 gi|314950632|ref|ZP_07853712.1| dimethyladenosine transferase [Enterococcus faecium TX0133A]
 gi|314992501|ref|ZP_07857922.1| dimethyladenosine transferase [Enterococcus faecium TX0133B]
 gi|314996345|ref|ZP_07861398.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01]
 gi|257814322|gb|EEV43080.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933]
 gi|257817984|gb|EEV45312.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502]
 gi|257821379|gb|EEV48509.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501]
 gi|257827545|gb|EEV54171.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410]
 gi|260073642|gb|EEW61968.1| dimethyladenosine transferase [Enterococcus faecium C68]
 gi|291589768|gb|EFF21571.1| dimethyladenosine transferase [Enterococcus faecium E1071]
 gi|291597226|gb|EFF28418.1| dimethyladenosine transferase [Enterococcus faecium U0317]
 gi|291605013|gb|EFF34481.1| dimethyladenosine transferase [Enterococcus faecium E1162]
 gi|313589488|gb|EFR68333.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01]
 gi|313592961|gb|EFR71806.1| dimethyladenosine transferase [Enterococcus faecium TX0133B]
 gi|313597179|gb|EFR76024.1| dimethyladenosine transferase [Enterococcus faecium TX0133A]
 gi|313599482|gb|EFR78325.1| dimethyladenosine transferase [Enterococcus faecium TX0133C]
 gi|313640551|gb|EFS05131.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04]
 gi|313645887|gb|EFS10467.1| dimethyladenosine transferase [Enterococcus faecium TX0082]
          Length = 294

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 153/284 (53%), Gaps = 20/284 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L    A
Sbjct: 14  KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAK-HA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E D +  P+L D    + N + I+  D LK D      + F+   P++++ANLP
Sbjct: 73  KQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ +++ +D      + L ++ QKEV +RI+A+  +  YG LS+   +  +A++
Sbjct: 132 YYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S ++       P     +  +  ++T+ AF +RRKTL  +L+  
Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            G++          L  AGI+   R E LS+++F  ++N +++N
Sbjct: 249 YGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSEN 292


>gi|324989790|gb|EGC21733.1| dimethyladenosine transferase [Streptococcus sanguinis SK353]
 gi|325686620|gb|EGD28646.1| dimethyladenosine transferase [Streptococcus sanguinis SK72]
          Length = 290

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 147/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFLAE-SA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++  D LKVD  ++     N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ Q+EV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRRKTLWNNLTSC 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G++          L +A +  ++R E LS+E+F R+ + L
Sbjct: 245 FGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADAL 285


>gi|320530094|ref|ZP_08031164.1| dimethyladenosine transferase [Selenomonas artemidis F0399]
 gi|320137527|gb|EFW29439.1| dimethyladenosine transferase [Selenomonas artemidis F0399]
          Length = 291

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 147/275 (53%), Gaps = 14/275 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL+ + +   K +GQNFL+D  +++ I E++      TV+EIG G G LTQ L   GAR 
Sbjct: 17  ILNAFHLRASKRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETGAR- 75

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIG 130
           V+ +E D++   +L +    + N + ++  D LK++  +   +    R  ++ANLPY I 
Sbjct: 76  VVAVELDKKLPAVLAETLRGYDN-VTVVPGDILKINIPETLGLKEGQRFKVVANLPYYIT 134

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +     P   E L  + QKEV  R+TAQ  S  YG LS+   + T   M+ D+
Sbjct: 135 TPIIMTLLE-QRLP--IERLVTMVQKEVAMRMTAQPGSKDYGALSLAVQYFTAPRMVMDV 191

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245
            P  F P+P+VTS V+  I   +P   P   +   ++ + AFG+RRKTL  +L   G   
Sbjct: 192 PPRAFRPAPEVTSAVVACIVRESPSVAPRSEKLFFRLIRAAFGQRRKTLPNALVGAGLTK 251

Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              +  L  AGI  + R E LS+EDF RI++ + D
Sbjct: 252 DAAQAALRAAGIAGSTRGEQLSLEDFARISDAVGD 286


>gi|33519600|ref|NP_878432.1| dimethyladenosine transferase [Candidatus Blochmannia floridanus]
 gi|62900575|sp|Q7VQK3|RSMA_BLOFL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33517263|emb|CAD83647.1| dimethyladenosine transferase [Candidatus Blochmannia floridanus]
          Length = 271

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 144/268 (53%), Gaps = 15/268 (5%)

Query: 16  HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +YK  +I KK+ GQ FL D NI+  I           VIEIG G G LT+ +  +    +
Sbjct: 5   YYKNHVIQKKW-GQIFLKDQNIIHSIISILNLKKYQNVIEIGPGLGALTKPISDI-IDFL 62

Query: 74  IVIEKDQQFF-PILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGT 131
           I+IE+D      +L   +S+   +++I   DA+ +DF K   N +  IR+I NLPYNI T
Sbjct: 63  ILIERDPNLVNRLLHTFTSK---KVKIFNKDAMTIDFSKLLTNPNQKIRLIGNLPYNIST 119

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +L+   I    +      +  + QKEV +RI AQ N+  YGRLS+   +  K   + ++ 
Sbjct: 120 KLI---IHLYKYINIIHDMHFMLQKEVAQRIVAQPNNKAYGRLSIFAQYYCKVQALLEVP 176

Query: 192 PHVFFPSPKVTSTVIHFIPHL--NPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
              F P PKV S ++ FIP+   NP P   +  L  +T+ AF +RRK +  SL  L    
Sbjct: 177 KKSFIPIPKVESMIVQFIPYHTNNPYPTVNISLLSLLTKFAFHQRRKIIHNSLSSLLNST 236

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
            + Q GI T  RAENL+I+ FC++T IL
Sbjct: 237 EIIQCGINTESRAENLTIQQFCKLTTIL 264


>gi|315635079|ref|ZP_07890359.1| dimethyladenosine transferase [Aggregatibacter segnis ATCC 33393]
 gi|315476200|gb|EFU66952.1| dimethyladenosine transferase [Aggregatibacter segnis ATCC 33393]
          Length = 287

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 145/288 (50%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D N+++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDNNVIQNIVAAIYPQANQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNIS--- 116
           + +       + V+E D+     L+     HP    +L +I+ DA++ DF   +      
Sbjct: 53  EPVAE-QVEHLTVLELDRDLAERLR----HHPFLHQKLNVIETDAMQFDFSSLYEQEHLA 107

Query: 117 ---SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHHIIQDMHFMLQKEVVKRLCASPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHTTLPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L    I+ N RAENLSI D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSGLFLPENLTALNIDLNARAENLSIADYARLANWLADN 272


>gi|62858143|ref|NP_001016494.1| dimethyladenosine transferase 1, mitochondrial [Xenopus (Silurana)
           tropicalis]
 gi|123893272|sp|Q28HM1|TFB1M_XENTR RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|89272950|emb|CAJ83142.1| transcription factor B1, mitochondrial [Xenopus (Silurana)
           tropicalis]
 gi|213624236|gb|AAI70821.1| transcription factor B1, mitochondrial [Xenopus (Silurana)
           tropicalis]
 gi|213624254|gb|AAI70849.1| transcription factor B1, mitochondrial [Xenopus (Silurana)
           tropicalis]
          Length = 346

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 147/296 (49%), Gaps = 23/296 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  I+  + +  +K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-------I 119
           G  +++V+EKD +F P LK ++     +++I+  D L    ++ F  ++  P       +
Sbjct: 77  GVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWDDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPF---WESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W+   AD   PF      +TL FQKEV ER+TA  +S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLEQLADRTGPFTYGRTQMTLTFQKEVAERLTASTSSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++          F I    F P P+V   V+HF P + P I    + ++K+ +  F  R
Sbjct: 197 SIMAQNLCNVKNCFTIPGRAFVPKPEVDVGVVHFTPFIQPKIEQPFKVVEKVVRSVFQFR 256

Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           RK     +  L          E +L  A ++  LR   L++  F ++ N+  +  D
Sbjct: 257 RKYCHHGVSILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312


>gi|284803073|ref|YP_003414938.1| dimethyladenosine transferase [Listeria monocytogenes 08-5578]
 gi|284996214|ref|YP_003417982.1| dimethyladenosine transferase [Listeria monocytogenes 08-5923]
 gi|284058635|gb|ADB69576.1| dimethyladenosine transferase [Listeria monocytogenes 08-5578]
 gi|284061681|gb|ADB72620.1| dimethyladenosine transferase [Listeria monocytogenes 08-5923]
          Length = 295

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 149/286 (52%), Gaps = 29/286 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L      +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TTNE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-- 239
           A + F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL    
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244

Query: 240 -----SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTD 278
                +LK    E +  L+  GI+   R E L I +F +++N L D
Sbjct: 245 ASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|319775528|ref|YP_004138016.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae F3047]
 gi|329122429|ref|ZP_08251016.1| dimethyladenosine transferase [Haemophilus aegyptius ATCC 11116]
 gi|317450119|emb|CBY86333.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae F3047]
 gi|327473711|gb|EGF19130.1| dimethyladenosine transferase [Haemophilus aegyptius ATCC 11116]
          Length = 287

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 147/288 (51%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL + ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHNTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF------EKFF 113
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF      E   
Sbjct: 53  EPVGEL-VDHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFGALYTKENLA 107

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|91227108|ref|ZP_01261592.1| dimethyladenosine transferase [Vibrio alginolyticus 12G01]
 gi|254229739|ref|ZP_04923147.1| dimethyladenosine transferase [Vibrio sp. Ex25]
 gi|262392439|ref|YP_003284293.1| dimethyladenosine transferase [Vibrio sp. Ex25]
 gi|269964664|ref|ZP_06178902.1| dimethyladenosine transferase [Vibrio alginolyticus 40B]
 gi|91188760|gb|EAS75047.1| dimethyladenosine transferase [Vibrio alginolyticus 12G01]
 gi|151937706|gb|EDN56556.1| dimethyladenosine transferase [Vibrio sp. Ex25]
 gi|262336033|gb|ACY49828.1| dimethyladenosine transferase [Vibrio sp. Ex25]
 gi|269830563|gb|EEZ84784.1| dimethyladenosine transferase [Vibrio alginolyticus 40B]
          Length = 269

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 15/264 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+     HP   ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLR----THPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           PKV S V+  +P+   +PC  + L+   ++ +E F +RRKT+R   K L    +L + G+
Sbjct: 184 PKVDSAVVRLVPY-EELPCPAKDLRLLDRVCREGFNQRRKTVRNCYKSLLSTEVLEELGV 242

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
             ++R ENL++E F  + N L DN
Sbjct: 243 NPSMRPENLTLEQFVAMANWLADN 266


>gi|325954121|ref|YP_004237781.1| ribosomal RNA small subunit methyltransferase A [Weeksella virosa
           DSM 16922]
 gi|323436739|gb|ADX67203.1| Ribosomal RNA small subunit methyltransferase A [Weeksella virosa
           DSM 16922]
          Length = 254

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 143/257 (55%), Gaps = 9/257 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK++GQ+FL D  + +KIAE     +   V+EIG G G LT+ +L    +K+ V+E
Sbjct: 2   KVRAKKHLGQHFLNDEQVAQKIAEGLTWDNYQQVLEIGPGMGVLTKYILQ-ANKKISVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    L++        L I ++D LK+DF +F   +  + ++ N PYNI ++++F  
Sbjct: 61  IDTESVAYLEENYVPFYPDLIIYEEDFLKMDFSRF---TDDLAVLGNFPYNISSQIIFKI 117

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P    +  +FQKEV ERI A K S  YG LSVL     +   +F +S +VF P
Sbjct: 118 LEEKNKVP---EVVGMFQKEVAERIAAPKGSRVYGILSVLAQAFYQVDYLFTVSENVFTP 174

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    + + +P   E L   + + AF +RRKTLR +LK LG  + + +  + 
Sbjct: 175 PPKVKSGVIRMKRYRSTLPEVDEKLFFTVVKTAFNQRRKTLRNALKSLGIPDTMKENEL- 233

Query: 257 TNLRAENLSIEDFCRIT 273
            NLRAE LS+EDF  +T
Sbjct: 234 LNLRAEQLSVEDFLELT 250


>gi|58336557|ref|YP_193142.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM]
 gi|227903108|ref|ZP_04020913.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796]
 gi|62900454|sp|Q5FMG3|RSMA_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|58253874|gb|AAV42111.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM]
 gi|227869094|gb|EEJ76515.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796]
          Length = 294

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 149/281 (53%), Gaps = 24/281 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I++ Y +  KK +GQNFL+D + +  I E++    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  KAIINRYFVKAKKNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-----KDISSQHPN-RLEIIQDDALKVDFEK----FFNISSPIR 120
            KV   E D     IL     K I  Q  N R +++  D LK DF+     FF++  PI+
Sbjct: 74  -KVFAYEVDDSLPEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  +  YG L++    
Sbjct: 133 VVANLPYYITTPIIFALSESDLH---FSSLTLMMQKEVAERLEAKPGNKEYGPLTISVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237
                +  ++    F P PKV S+V+   P L   P  +E+ K    + +  F +RRKTL
Sbjct: 190 EMNVKIALEVKSTSFMPRPKVDSSVVVLTP-LQERP-KIENRKHFIWVVKMCFSQRRKTL 247

Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
             +LK L       E L+ + G++  +R E+L+I+ F  I 
Sbjct: 248 NNNLKALIPNAKEREALISKLGVDPRVRPEDLTIDQFIEIA 288


>gi|317126783|ref|YP_004093065.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522]
 gi|315471731|gb|ADU28334.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522]
          Length = 292

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 22/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D N+LK+I  ++       VIEIG G G LT+ L    A
Sbjct: 13  KAILDKYGFSFKKSLGQNFLIDTNVLKRIVAAANVSQSTGVIEIGPGIGALTEQLAK-EA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           ++V+  E DQ+  PILK+  S + +  +II  D LK D +K     F  +  + ++ANLP
Sbjct: 72  KRVVAFEIDQRLLPILKETLSAYEH-TKIIHQDVLKADVQKVIKDEFEENEELAVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   +  +  P    ++ ++ QKEV ERI A+ NS +YG LS+   +   A  
Sbjct: 131 YYVTTPILMKLLE-EKLP--VRTIVVMIQKEVAERIAAKPNSKNYGSLSIAAQYYADAET 187

Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRKTLR------ 238
           +F +   VF P P V S ++   I    PI    E+   +I + +F +RRKT+       
Sbjct: 188 VFTVPKTVFVPQPNVDSAILRLSIREKPPITVKDEAFFFEIIRASFAQRRKTILNNLAHH 247

Query: 239 -QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             +L +   E +L    I+   R E LS+E+F     +L+DN
Sbjct: 248 FSTLSKQTIEEILQSINIDPRRRGEALSMEEF----GVLSDN 285


>gi|326804008|ref|YP_004321826.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650269|gb|AEA00452.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 294

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 148/284 (52%), Gaps = 24/284 (8%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL+ Y++  KK +GQNFL++  IL+K+ +++       VIEIG G G LT+ L    A 
Sbjct: 14  AILNRYQLDAKKSLGQNFLMEPQILEKMVDAADIDQDTDVIEIGPGIGALTEFLCE-SAG 72

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPY 127
           +V+  E D +  P+L +    H + L ++  D L+ D      ++F  S  + ++ANLPY
Sbjct: 73  RVLAFEVDDRLLPVL-EAELGHYDNLTVLHQDILEADLNASVSQYFPDSKRLAVVANLPY 131

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++F+++ +D          L+ Q EV ER+TAQ  +  Y  L+++  +  ++ + 
Sbjct: 132 YITTPIIFHFLESDLE---VSDFALMMQYEVAERLTAQAGTKAYSALTIVLNYYCQSEIA 188

Query: 188 FDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             +   VF P PKV S V+H      P + P    L    K+ + AF  RRKTL  +LK 
Sbjct: 189 VKVPKTVFKPRPKVDSAVLHLKRRQAPPVKPQNEAL--FFKVVKGAFAHRRKTLWNNLKS 246

Query: 244 LGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L           E  +  AGI+  +RAE L+IEDF  +++ L +
Sbjct: 247 LFAGQYQEPSDLEAAIEAAGIDPKVRAEQLTIEDFSHLSDALNE 290


>gi|149182822|ref|ZP_01861284.1| dimethyladenosine transferase [Bacillus sp. SG-1]
 gi|148849489|gb|EDL63677.1| dimethyladenosine transferase [Bacillus sp. SG-1]
          Length = 292

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 146/281 (51%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL+ I E +G  +    IEIG G G LT+  L   A
Sbjct: 12  KEILKKYGFSFKKSLGQNFLIDPNILRNITEYAGLTEKTAAIEIGPGIGALTEH-LARTA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
            KV+  E DQ+  PIL D  S + N + I+ +D LK D     EK       I ++ANLP
Sbjct: 71  GKVLAFEIDQRLLPILADTLSPY-NNITIVNEDVLKADVQEMIEKELADYEDIMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   ++ +  P   + + ++ QKEVG+RI A+  +  YG LS+   + T A  
Sbjct: 130 YYVTTPIILKLLT-EGLP--IKGICVMLQKEVGDRIAAKPGTKEYGSLSIAIQYYTTAET 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--- 241
           +  +   VF P P V S VI  +    P     +     K+T+ +F +RRKT+  +L   
Sbjct: 187 VMIVPKTVFMPQPNVDSAVIRLMKRDKPAAEVDDEDFFFKVTRASFAQRRKTILNNLTSQ 246

Query: 242 ----KRLGGENL--LHQAGIETNLRAENLSIEDFCRITNIL 276
               K+   E L  L +AG++   R E LSI++F  ++N L
Sbjct: 247 LPDGKQKKEEILASLEKAGVDPGRRGETLSIQEFALLSNEL 287


>gi|154498148|ref|ZP_02036526.1| hypothetical protein BACCAP_02129 [Bacteroides capillosus ATCC
           29799]
 gi|150273138|gb|EDN00295.1| hypothetical protein BACCAP_02129 [Bacteroides capillosus ATCC
           29799]
          Length = 290

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 146/289 (50%), Gaps = 32/289 (11%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           + +K +L  +     K MGQNFL++ ++ + IA +SG+     V+EIG G G LT  L  
Sbjct: 7   NDIKALLGRHGFRFSKSMGQNFLIEDHVPRDIAAASGADKDCGVLEIGPGIGPLTVRLAE 66

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRII 122
              R V+ +E D+   P+L +  +   N +EI+  D +K+D      EK   +  P+   
Sbjct: 67  RAGR-VVSVELDKALLPVLAETLAGRDN-VEIVPGDIMKLDIPALVAEKMDGLK-PL-AC 122

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYNI T +L   I A  +    +++T++ Q+EV  RI A   S  YG  SV   + T
Sbjct: 123 ANLPYNITTPVLTALIEAGCF----QAITVMIQREVALRICAAPGSGDYGAFSVYCQYHT 178

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK------KITQEAFGKRRKT 236
              ++FD+ P  F P+PKVTS+VI  +P   P     E +K      ++ + AF +RRKT
Sbjct: 179 TPELLFDVPPECFIPAPKVTSSVIRLVPRPAP-----EEVKDEKQFFRLVRAAFAQRRKT 233

Query: 237 LRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILT 277
           L  +L    G  L        +   G+  ++R E L I +F  + + L 
Sbjct: 234 LLNALSSAYGSQLSKDELRDAIAACGLPADVRGERLGIPEFAALADALA 282


>gi|328676628|gb|AEB27498.1| Dimethyladenosine transferase [Francisella cf. novicida Fx1]
          Length = 262

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       VIEIG G G LT+ LL+  +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVIEIGPGLGALTRYLLS-SSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           +E D      L   + Q      I   D LK D     N S+  I++I NLPYNI + +L
Sbjct: 61  VEFDANVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F+P PKV S ++   P +   +       ++I +++F +RRKTL  +LK +  E  +  +
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 254 G--IETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|157690824|ref|YP_001485286.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032]
 gi|166987691|sp|A8F909|RSMA_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157679582|gb|ABV60726.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032]
          Length = 292

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 143/281 (50%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL +I + +   D   VIEIG G G LT+ L    A
Sbjct: 12  KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAK-RA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           +KV   E DQ+  PIL D  S + N + II  D LK D     E+ F     + ++ANLP
Sbjct: 71  KKVTAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVGKVIEENFADCKEVMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +  P   + + ++ QKEV +R+ A  +S  Y  LS+   + T+A  
Sbjct: 130 YYVTTPIIMKLLE-ENLP--LKGIVVMLQKEVADRMAAIPSSKEYNSLSIAVQYYTEAKT 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S VI       P       E   ++ + +FG+RRKTL  +L   
Sbjct: 187 VMVVPKTVFVPQPNVDSAVIKLTVRETPAVSVENDEFFFQLIRASFGQRRKTLMNNLMNN 246

Query: 245 GGENLLHQAGIETNL---------RAENLSIEDFCRITNIL 276
             +   H+A IE  L         R E+LSIE+F R++N+L
Sbjct: 247 LPDGKQHKAIIEEALQTADIDGKRRGESLSIEEFARLSNVL 287


>gi|223044398|ref|ZP_03614431.1| dimethyladenosine transferase [Staphylococcus capitis SK14]
 gi|222442187|gb|EEE48299.1| dimethyladenosine transferase [Staphylococcus capitis SK14]
          Length = 296

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 145/277 (52%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+ KI ++S   D   VIE+G G G+LT+ L    A
Sbjct: 13  RALLDQYGFNFKKSLGQNFLVDVNIINKIIDASQIDDTTGVIEVGPGMGSLTEQLAK-NA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLP 126
           +KV+  E DQ+  P+L+D  + + N + II +D LK +  K  +        I ++ANLP
Sbjct: 72  KKVMSFEIDQRLIPVLEDTLAPYDN-VTIINEDILKANISKAVHTHLSDCEKIMVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A   +  YG LS++  + T+ + 
Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNATVGTKAYGSLSIVAQYYTETSK 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 188 VLTVPKSVFMPPPNVDSIVVKLMQREEPLVQVDNEEAFFKLAKAAFAQRRKTINNNYQNF 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRI 272
             +         N L  A I+   R E L+I+DF  +
Sbjct: 248 FKDGKKHKASILNWLESAEIDPKRRGETLTIQDFANL 284


>gi|118497159|ref|YP_898209.1| dimethyladenosine transferase [Francisella tularensis subsp.
           novicida U112]
 gi|194323457|ref|ZP_03057234.1| dimethyladenosine transferase [Francisella tularensis subsp.
           novicida FTE]
 gi|166221666|sp|A0Q5E0|RSMA_FRATN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118423065|gb|ABK89455.1| dimethyladenosine transferase [Francisella novicida U112]
 gi|194322312|gb|EDX19793.1| dimethyladenosine transferase [Francisella tularensis subsp.
           novicida FTE]
          Length = 262

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       VIEIG G G LT+ LL+  +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVIEIGPGLGALTRYLLS-SSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           +E D      L   + Q      I   D LK D     N S+  I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F+P PKV S ++   P +   +       ++I +++F +RRKTL  +LK +  E  +  +
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 254 G--IETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|28897110|ref|NP_796715.1| dimethyladenosine transferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838977|ref|ZP_01991644.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ3810]
 gi|260361684|ref|ZP_05774711.1| dimethyladenosine transferase [Vibrio parahaemolyticus K5030]
 gi|260878023|ref|ZP_05890378.1| dimethyladenosine transferase [Vibrio parahaemolyticus AN-5034]
 gi|260896918|ref|ZP_05905414.1| dimethyladenosine transferase [Vibrio parahaemolyticus Peru-466]
 gi|260903390|ref|ZP_05911785.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ4037]
 gi|31340184|sp|Q87ST6|RSMA_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|28805319|dbj|BAC58599.1| dimethyladenosine transferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747565|gb|EDM58497.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ3810]
 gi|308088709|gb|EFO38404.1| dimethyladenosine transferase [Vibrio parahaemolyticus Peru-466]
 gi|308090066|gb|EFO39761.1| dimethyladenosine transferase [Vibrio parahaemolyticus AN-5034]
 gi|308109049|gb|EFO46589.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ4037]
 gi|308115492|gb|EFO53032.1| dimethyladenosine transferase [Vibrio parahaemolyticus K5030]
 gi|328471908|gb|EGF42785.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio parahaemolyticus 10329]
          Length = 269

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 138/264 (52%), Gaps = 15/264 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP+   +L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPDLADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHKD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           PKV S V+  +P+   +PC  + L+   ++ +E F +RRKT+R   K L    +L + G+
Sbjct: 184 PKVDSAVVRLVPY-EELPCPAKDLRLLDRVCREGFNQRRKTVRNCYKSLLSAEVLEELGV 242

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
             ++R ENL+++ F  + N L DN
Sbjct: 243 NPSMRPENLTLQQFVAMANWLADN 266


>gi|253998288|ref|YP_003050351.1| dimethyladenosine transferase [Methylovorus sp. SIP3-4]
 gi|253984967|gb|ACT49824.1| dimethyladenosine transferase [Methylovorus sp. SIP3-4]
          Length = 254

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/264 (36%), Positives = 140/264 (53%), Gaps = 15/264 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K + KK  GQNFL D  I+  +  +        ++EIG G G LTQ LL  L    V+ I
Sbjct: 2   KHVAKKRFGQNFLTDQAIITSLVNAIAPQPNDLMVEIGPGLGALTQPLLQRLENLHVVEI 61

Query: 77  EKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           ++D     I+  +   + P ++ I   DALK DF    +I+S +R++ NLPYNI T +LF
Sbjct: 62  DRD-----IIAWMEKHYAPGKVTIHNIDALKFDFA---SIASRLRVVGNLPYNISTPILF 113

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +  D      + +  + QKEV ER+ A+ +S  YGRLSV+  +      +F + P  F
Sbjct: 114 HLL--DNVDHIID-MHFMLQKEVVERMVAEPSSAAYGRLSVMLQYHLHMEYLFTVPPEAF 170

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S  +  +PH   P P    +L  ++   AFG+RRKTLR +LK L  +      
Sbjct: 171 DPAPKVESAFVRCVPHTELPFPAKDYALFSRVVATAFGQRRKTLRNTLKGLLDDAGFEAL 230

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           GI++  RAENL +  F  I N L 
Sbjct: 231 GIDSQWRAENLPLSAFVSIANYLV 254


>gi|197118669|ref|YP_002139096.1| dimethyladenosine transferase [Geobacter bemidjiensis Bem]
 gi|197088029|gb|ACH39300.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
           [Geobacter bemidjiensis Bem]
          Length = 275

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 148/278 (53%), Gaps = 17/278 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI  KK  GQNFL+D ++L +I           ++E+G G G L+++L   GAR  + +E
Sbjct: 3   KIRAKKEFGQNFLVDDSVLTRIVACVAPTKDDCILEVGPGRGALSRLLAESGAR-FLAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPYNIGTRLL 134
            D++  P+LK   + +PN +EI   D L+VD        +     ++ ANLPYNI +++L
Sbjct: 62  WDRELLPLLKAEFATNPN-VEIGHGDILRVDLPLLLGSRAEGKKWKVAANLPYNISSQVL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F ++        +E L L+ QKEVG+R+TA      YG L+VL          F + P  
Sbjct: 121 FRFMEHSE---LFEKLVLMLQKEVGDRLTAPPACKEYGALTVLLRLHFDIRREFIVKPGS 177

Query: 195 FFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGEN---- 248
           F P PKV S V+ F+P   P +    E L +++ + AF +RRKTL  SL+  G ++    
Sbjct: 178 FRPVPKVDSAVLSFLPLSGPRVEVGDEELFRRVVKGAFLQRRKTLLNSLRSSGFDDADGF 237

Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
               L ++GI+   R E LS+E+F  +T  L+  + +A
Sbjct: 238 LSAALSRSGIDGGRRGETLSLEEFACLTRELSAGKTLA 275


>gi|325283380|ref|YP_004255921.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus
           proteolyticus MRP]
 gi|324315189|gb|ADY26304.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus
           proteolyticus MRP]
          Length = 282

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 149/273 (54%), Gaps = 18/273 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K +++ + I P K +GQNFL+D NIL+ IA++ G+ +G+ V+E+G G G LT+ L   G
Sbjct: 19  VKDLMARHGIRPTKSLGQNFLIDGNILRAIADAGGAAEGVRVLEVGPGLGVLTRELAERG 78

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +V  +EKDQ   P+L++  +     + I+  DAL+ D+    ++ +  R+IANLPY I
Sbjct: 79  A-QVTTLEKDQGLRPVLEETLAGL--DVNIVWGDALEFDYA---SLPAGTRVIANLPYYI 132

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              LL  ++ A    P   S T+L QKEV +R+ +Q    +YG L+ L         + D
Sbjct: 133 TGPLLSRFMRA----PSIVSATVLVQKEVAQRLASQPGDDNYGFLTALAHLYGTVRPVRD 188

Query: 190 ISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           +    F P+P VTS+V+        P P   E+  ++   A   RRKTLR +LK  G   
Sbjct: 189 VPKGSFIPAPAVTSSVVRLDFDRERPQPS--EAYIRLIDAALHHRRKTLRNNLKMAGHPV 246

Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              E  L  AG+  ++RAE++ +    ++ + L
Sbjct: 247 DRIEAALEAAGLRPDVRAEDVPLAQMRQLADAL 279


>gi|295694738|ref|YP_003587976.1| dimethyladenosine transferase [Bacillus tusciae DSM 2912]
 gi|295410340|gb|ADG04832.1| dimethyladenosine transferase [Bacillus tusciae DSM 2912]
          Length = 293

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 143/283 (50%), Gaps = 18/283 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S   +L  Y   PKK +GQ+FL+D  IL++I  ++       V+EIG G G LT + L  
Sbjct: 10  SAAELLRRYAFHPKKSLGQHFLVDDRILERIVAAADLSGREAVLEIGPGLGALT-LRLAQ 68

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIAN 124
            A +V+ +EKD+   P+L ++     N +++   D L+VD     E+ F   + +R++AN
Sbjct: 69  AAWRVLAVEKDRSLQPVLSEVLRDFGN-VQVCWGDVLEVDLPRMCEEAFGPRT-VRVVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW-RTK 183
           LPY + T ++   +      P  + + L+ Q+EV +R+TA+  +  YG L+V   W   K
Sbjct: 127 LPYYVTTPVMMKLLEEG---PVMDRMVLMVQREVADRLTARPGTKTYGALTVAVQWFAEK 183

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK- 242
              +  +    F+P P+V S V+       P P     L ++ +  FG+RRKTL  +L  
Sbjct: 184 VESVARVPASCFWPRPEVDSVVVRLDLRPRPDPEVTRRLSRVVRAGFGQRRKTLLNALSH 243

Query: 243 ------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                 R   E  L  A +  + RAE LS+E+F R+   L D 
Sbjct: 244 ALAGRDRASIEQALRHARVAPDRRAETLSLEEFTRLAQALADG 286


>gi|260582745|ref|ZP_05850532.1| dimethyladenosine transferase [Haemophilus influenzae NT127]
 gi|260094195|gb|EEW78096.1| dimethyladenosine transferase [Haemophilus influenzae NT127]
          Length = 287

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 149/288 (51%), Gaps = 27/288 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H     L H     +K  GQNFL D ++++ I  +        ++EIG G G LT
Sbjct: 1   MNSKKH-----LGH---TARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-- 117
           + +  L    + V+E D+     L+     HP    +L +I+ DA++ DF++ +   +  
Sbjct: 53  EPVGEL-VEHLTVVELDRDLAERLR----HHPFLHQKLTVIETDAMQFDFDELYTTENLA 107

Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R+  NLPYNI T L+F+      +    + +  + QKEV +R+ A  NS  YGR
Sbjct: 108 EKGQKLRVFGNLPYNISTPLMFHLFK---YHDVIQDMHFMLQKEVVKRLCAAPNSKAYGR 164

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFG 231
           L+++  +  +   + ++ P  F P+PKV S V+  IP+   P P   L  L ++  +AF 
Sbjct: 165 LTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPNKELPHPVKDLYWLNRVCSQAFN 224

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +RRKTLR +L  L     L   GI+ N RAENL+I D+  + N L DN
Sbjct: 225 QRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYAHLANWLADN 272


>gi|253752653|ref|YP_003025794.1| dimethyladenosine transferase [Streptococcus suis SC84]
 gi|253754479|ref|YP_003027620.1| dimethyladenosine transferase [Streptococcus suis P1/7]
 gi|253756412|ref|YP_003029552.1| dimethyladenosine transferase [Streptococcus suis BM407]
 gi|251816942|emb|CAZ52591.1| dimethyladenosine transferase [Streptococcus suis SC84]
 gi|251818876|emb|CAZ56719.1| dimethyladenosine transferase [Streptococcus suis BM407]
 gi|251820725|emb|CAR47487.1| dimethyladenosine transferase [Streptococcus suis P1/7]
          Length = 290

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D   +  N + ++  D LK D     + F N   PI+++ANLP
Sbjct: 69  AEVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTSILMHLIESKI--PFSE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNH 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G++          L  A +E ++R E LS+ DF R+++ L +
Sbjct: 245 FGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287


>gi|189425372|ref|YP_001952549.1| dimethyladenosine transferase [Geobacter lovleyi SZ]
 gi|189421631|gb|ACD96029.1| dimethyladenosine transferase [Geobacter lovleyi SZ]
          Length = 271

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 146/266 (54%), Gaps = 16/266 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQNFL D NI++KI  ++       V+E+G G G LT+ LL   AR ++ +E D+
Sbjct: 8   PRKALGQNFLSDHNIIRKILTTAHLQPTDRVLEVGPGRGALTE-LLAAQARHLVAVEFDR 66

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               +L++  +  P  + I + D L+VDFE+    S   +++ANLPYNI T +LF ++  
Sbjct: 67  DLAALLRERFAGQPQVM-IHEQDILQVDFEQLLG-SHTYKVVANLPYNISTPVLFRFLEE 124

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 +  L ++ QKEVGER+ AQ +   YG L+VL     +    F + P  FFP PK
Sbjct: 125 RQR---FSRLVVMLQKEVGERLAAQPDCSDYGILTVLFRQWFEVKREFLVPPGCFFPPPK 181

Query: 201 VTSTVIHFIPHL-NPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG-------ENLLH 251
           V S VI   P + + +    ++L +++ + AFG RRKTL   LK  GG       E LL 
Sbjct: 182 VDSVVISLTPLVASRVEVGNQALFERLVKAAFGMRRKTLWNCLKS-GGLAEPEQLEQLLL 240

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              I+   R E L+IE+F  ++  L+
Sbjct: 241 SCSIDGRRRGETLAIEEFALLSRTLS 266


>gi|330448803|ref|ZP_08312450.1| dimethyladenosine transferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492994|dbj|GAA06947.1| dimethyladenosine transferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 274

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 137/263 (52%), Gaps = 13/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +   L G  ++EIG G G +T+ +  L   K  VIE D+ 
Sbjct: 13  RKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTVIELDRD 71

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP+   +L I Q DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 72  LAERLEN----HPDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMFHIF 127

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   S  YGRL+V+  +  +   + ++ P  F P+
Sbjct: 128 E---FHKDVQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESFVPA 184

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P+   P PC  L+ L ++ +E F +RRKT+R   K L     L   GI 
Sbjct: 185 PKVDSAVVRLTPYETLPYPCTSLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEALGIN 244

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            + R EN+++E F  + N L  N
Sbjct: 245 PSHRPENITVEQFVAMANWLDAN 267


>gi|167760646|ref|ZP_02432773.1| hypothetical protein CLOSCI_03028 [Clostridium scindens ATCC 35704]
 gi|167661771|gb|EDS05901.1| hypothetical protein CLOSCI_03028 [Clostridium scindens ATCC 35704]
          Length = 291

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 154/289 (53%), Gaps = 21/289 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  ++++ IL  Y+   +K  GQNFL+D ++L KI  ++       V+EIG G G +
Sbjct: 5   TLGNPQNTIE-ILQKYQFTFQKKFGQNFLIDTHVLDKIIRAADIGKDDMVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    A KVI +E D+   PIL D  S + N ++II +D LK+D ++     N   P
Sbjct: 64  TQYLAE-AAGKVIAVEIDKNLIPILTDTLSGYEN-VQIINEDVLKLDIQRLVEEENAGRP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +    P + S+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 IKVVANLPYYITTPIIMGLFESHV--PLY-SVTVMVQKEVADRMQTGPGNKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRK 235
            +  +  ++ ++ P+ F P PKV S VI    +  P P  +E    L  I + +F +RRK
Sbjct: 179 QYYAEPYIVANVPPNCFMPRPKVGSAVIRLTRYEKP-PVEVEDERLLFDIIRASFNQRRK 237

Query: 236 TL--------RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL        R  + +      + Q G   ++R E L++E+F +++N L
Sbjct: 238 TLANGLNNSDRLDVPKEAITEAIQQLGKGPSVRGETLTLEEFAKLSNSL 286


>gi|283797637|ref|ZP_06346790.1| dimethyladenosine transferase [Clostridium sp. M62/1]
 gi|291074750|gb|EFE12114.1| dimethyladenosine transferase [Clostridium sp. M62/1]
          Length = 310

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 151/280 (53%), Gaps = 20/280 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y    +K  GQNFL+D+++L KI  ++G      V+EIG G G +TQ L    A++
Sbjct: 37  IIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE-SAKQ 95

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129
           V+ +E D    PIL +  + + N + +I  D LKVD +K    +N   PI+++ANLPY I
Sbjct: 96  VVAVEIDTNLIPILSETLAGYDN-VTVINQDILKVDIKKLAEEYNGGRPIKVVANLPYYI 154

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     +       +++T++ QKEV +R+     S  YG LS+   +  +  ++ +
Sbjct: 155 TTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQYYAEPYIVAN 211

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR--- 243
           + P+ F P P V S VI    H  P P  +++   + K+ + +F +RRKTL   L     
Sbjct: 212 VPPNCFIPRPNVGSAVIRLTRHKKP-PVEVKNRDLMFKLIRASFNQRRKTLLNGLNNSPE 270

Query: 244 --LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
             +G E +   + Q G+  ++R E L++E F R++++L +
Sbjct: 271 IPIGKEKIAAAIEQLGVPASVRGEALTLEQFARLSDLLEE 310


>gi|315656078|ref|ZP_07908969.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493080|gb|EFU82680.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 309

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 150/297 (50%), Gaps = 34/297 (11%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  +  + +  ++ P K  GQNF+ D   +++IA ++G   G TV+EIG G G+LT  LL
Sbjct: 6   ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV----DFEKFFNISSPI 119
            LG  KVI IE DQ+    L    +QH      L ++  DAL++    D E     ++P 
Sbjct: 66  ELGC-KVIAIEIDQRLATALPVTVAQHGANSADLCVMTQDALEIAGEADLELPTGWAAPH 124

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R++ANLPYN+ T LL +++      P  ES  ++ Q EV +R  A      YG  SV   
Sbjct: 125 RLVANLPYNVATPLLLHFLEV---LPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIP-----------HLNPIPCCLESLKKITQE 228
           W  +A   F +  +VF+P P V STV+ F              L+      E+++ + QE
Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKLSAEGLTDEAIETLRQE 241

Query: 229 -------AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
                  AF +RRKTLRQSL    G      NLL  AGI   LRAE LS+ DF +I 
Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAAGITPGLRAERLSVIDFTKIA 298


>gi|270290912|ref|ZP_06197136.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4]
 gi|304386409|ref|ZP_07368742.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284]
 gi|270280972|gb|EFA26806.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4]
 gi|304327766|gb|EFL94993.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284]
          Length = 297

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 149/279 (53%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  Y +  KK +GQNFL D N+L  I +++   DG  VIE+G G G+LT+ +    A
Sbjct: 14  RAILEKYGLSAKKSLGQNFLTDPNVLVNIVDAAEINDGDDVIEVGPGIGSLTEQIAK-RA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
            +V+  E DQ   P+L +  + + N + II +D LKV+  +     F+   PI+++ANLP
Sbjct: 73  HQVLAFEIDQNLIPVLDETLAPYDN-ITIINEDVLKVNVNEVVAEHFDGQHPIKLVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L +++ A + P     + ++ QKEV +R+TAQ     YG LSV+  +R +  +
Sbjct: 132 YYITTPILKSFM-ASSLP--IAKMVVMMQKEVADRLTAQPGDKEYGSLSVVVQYRMQTQV 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLN-PI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P PKV S ++   P  + P+ P       K     F  RRK L  +++ L
Sbjct: 189 EFTVPARVFVPQPKVDSAIVSLTPRKDWPVYPADDRDFFKTVHGCFMHRRKNLWNNMQGL 248

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITN 274
            G         +++L +  I+ ++R E L++ DF  + N
Sbjct: 249 YGKAPETKEKIQSVLDELEIDPHIRPERLTVVDFINLHN 287


>gi|146319655|ref|YP_001199367.1| dimethyladenosine transferase [Streptococcus suis 05ZYH33]
 gi|146321852|ref|YP_001201563.1| dimethyladenosine transferase [Streptococcus suis 98HAH33]
 gi|145690461|gb|ABP90967.1| Dimethyladenosine transferase [Streptococcus suis 05ZYH33]
 gi|145692658|gb|ABP93163.1| Dimethyladenosine transferase [Streptococcus suis 98HAH33]
 gi|292559272|gb|ADE32273.1| Dimethyladenosine transferase [Streptococcus suis GZ1]
          Length = 302

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+  L   A
Sbjct: 22  RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTE-FLAENA 80

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D   +  N + ++  D LK D     + F N   PI+++ANLP
Sbjct: 81  AEVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLP 139

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 140 YYITTSILMHLIESKI--PFSE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 196

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 197 AFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNH 256

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G++          L  A +E ++R E LS+ DF R+++ L +
Sbjct: 257 FGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 299


>gi|332360011|gb|EGJ37825.1| dimethyladenosine transferase [Streptococcus sanguinis SK1056]
          Length = 290

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 151/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           M    HS+ + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G L
Sbjct: 1   MRIADHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGAL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISS 117
           T+ L    A +V+  E D +  PIL D      N + ++  D LKV+  ++     N   
Sbjct: 61  TEFLAE-SAAEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVNLAQYIAEFKNPDL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T +L + I  ++  PF E   ++ Q+EV +RI+AQ N+  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RRK
Sbjct: 176 VQYYMTAKVAFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRRK 235

Query: 236 TLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L    G++          L +A +  ++R E LS+E+F R+ + L
Sbjct: 236 TLWNNLTSYFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADAL 285


>gi|311085884|gb|ADP65966.1| dimethyladenosine transferase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 308

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 144/282 (51%), Gaps = 26/282 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT N K H           +P K  GQNFL++ + +K I +        T++EIG G   
Sbjct: 36  MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119
           LT+ +  L   ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     I
Sbjct: 85  LTKPMCEL-LEELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141

Query: 120 RIIANLPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           RI  NLPYNI T L   LF  I         + +  + QKEV ER+ +   +  YGRLS+
Sbjct: 142 RIFGNLPYNISTSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSI 195

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234
           ++ +     ++ ++SP  F P PKV S  I+  PH N       +  L  IT++AF  RR
Sbjct: 196 ISQYYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRR 255

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           K LR SLK L  E  L +  I +NLRAEN+S+  +C++ N L
Sbjct: 256 KILRHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYL 297


>gi|219682072|ref|YP_002468456.1| dimethyladenosine transferase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621805|gb|ACL29961.1| dimethyladenosine transferase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 273

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 144/282 (51%), Gaps = 26/282 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT N K H           +P K  GQNFL++ + +K I +        T++EIG G   
Sbjct: 1   MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 49

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119
           LT+ +  L   ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     I
Sbjct: 50  LTKPMCEL-LEELIVIEIDQDLLFLLKKRSFY--SKLIVFYQNALSFNFLNLFHKKKQLI 106

Query: 120 RIIANLPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           RI  NLPYNI T L   LF  I         + +  + QKEV ER+ +   +  YGRLS+
Sbjct: 107 RIFGNLPYNISTSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSI 160

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234
           ++ +     ++ ++SP  F P PKV S  I+  PH N       +  L  IT++AF  RR
Sbjct: 161 ISQYYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRR 220

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           K LR SLK L  E  L +  I +NLRAEN+S+  +C++ N L
Sbjct: 221 KILRHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYL 262


>gi|261208234|ref|ZP_05922907.1| dimethyladenosine transferase [Enterococcus faecium TC 6]
 gi|289565965|ref|ZP_06446404.1| dimethyladenosine transferase [Enterococcus faecium D344SRF]
 gi|294615973|ref|ZP_06695800.1| dimethyladenosine transferase [Enterococcus faecium E1636]
 gi|294617634|ref|ZP_06697262.1| dimethyladenosine transferase [Enterococcus faecium E1679]
 gi|260077491|gb|EEW65209.1| dimethyladenosine transferase [Enterococcus faecium TC 6]
 gi|289162249|gb|EFD10110.1| dimethyladenosine transferase [Enterococcus faecium D344SRF]
 gi|291591159|gb|EFF22841.1| dimethyladenosine transferase [Enterococcus faecium E1636]
 gi|291596098|gb|EFF27363.1| dimethyladenosine transferase [Enterococcus faecium E1679]
          Length = 294

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 152/284 (53%), Gaps = 20/284 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L    A
Sbjct: 14  KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAK-HA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E D +  P+L D    + N + I+  D LK D      + F+   P++++ANLP
Sbjct: 73  KQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ +++ +D      + L ++ QKEV +RI+A+  +  YG LS+   +  +A +
Sbjct: 132 YYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEANL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S ++       P     +  +  ++T+ AF +RRKTL  +L+  
Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            G++          L  AGI+   R E LS+++F  ++N +++N
Sbjct: 249 YGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSEN 292


>gi|163855067|ref|YP_001629365.1| dimethyladenosine transferase [Bordetella petrii DSM 12804]
 gi|226729759|sp|A9I5F2|RSMA_BORPD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|163258795|emb|CAP41094.1| dimethyladenosine transferase [Bordetella petrii]
          Length = 262

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 135/260 (51%), Gaps = 17/260 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+FL D ++++ I  +     G  V+EIG G   LTQ LL  G   + V+E D+ 
Sbjct: 7   RKRFGQHFLTDDSVVEAIVRAIAPARGDRVVEIGPGLSALTQPLLR-GLDHLTVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA- 140
               L++  +  P RL +I+ DAL VDF    ++   +R++ NLPYNI + LLF+ ++A 
Sbjct: 66  LAARLRN--AHAPGRLTVIEADALTVDFA---SLGERLRVVGNLPYNISSPLLFHLMAAA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           DT          + Q+EV +R+ A   S  YGRLSV+   R +   +FD+ P  F P P+
Sbjct: 121 DTV----RDQHFMLQREVIDRMVAAPGSADYGRLSVMLQSRYRMDKLFDVPPEAFDPPPR 176

Query: 201 VTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           V S V+  +P     L   P    +L+ +   AF +RRK LR+ L             I 
Sbjct: 177 VVSAVVRMVPLPADRLR--PASEAALQAVVARAFAQRRKMLRRGLGDWAALVPWDALDIA 234

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE +S+E F R+T+ L
Sbjct: 235 PTARAEEISVEKFIRLTDAL 254


>gi|325510393|gb|ADZ22029.1| dimethyladenosine transferase [Clostridium acetobutylicum EA 2018]
          Length = 287

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 148/276 (53%), Gaps = 12/276 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K  + + I+  Y     K +GQNFL D  +L  I E++       +IEIG G G LT+ L
Sbjct: 13  KEFNTRQIVEKYNFRFSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRL 72

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   A+KV  IE D+   PI+ +   ++ N   +I +DALKVDF         ++++ANL
Sbjct: 73  LE-KAKKVCAIELDESLIPIITNEMKEYDN-FTLIHNDALKVDFNNIIGEEQSVKLVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++       ++SLT++ QKEVG+RI A+ ++  YG L++L  +     
Sbjct: 131 PYYVTTPIISKLLNEGYN---FKSLTIMIQKEVGDRIAAKPSTKDYGALTLLVQYYCDVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLK- 242
           ++  + P  F P PKV S VI       P +    E L   + + AF  RRKTL  ++K 
Sbjct: 188 VVRVVKPSCFIPQPKVDSLVIRLDKLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKG 247

Query: 243 -RLGGENL---LHQAGIETNLRAENLSIEDFCRITN 274
            +L  E+L      AGI++  R E LSIE+F ++++
Sbjct: 248 LKLSSEDLEKAFEAAGIDSKRRGETLSIEEFGKLSD 283


>gi|255657480|ref|ZP_05402889.1| dimethyladenosine transferase [Clostridium difficile QCD-23m63]
 gi|296449075|ref|ZP_06890865.1| dimethyladenosine transferase [Clostridium difficile NAP08]
 gi|296879898|ref|ZP_06903871.1| dimethyladenosine transferase [Clostridium difficile NAP07]
 gi|296262168|gb|EFH08973.1| dimethyladenosine transferase [Clostridium difficile NAP08]
 gi|296429187|gb|EFH15061.1| dimethyladenosine transferase [Clostridium difficile NAP07]
          Length = 289

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           ++ K ++  Y     K +GQNFL+D NI+ KI   +    G  +IE+G G G LT+ +  
Sbjct: 8   NATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITGGDNIIEVGPGIGTLTREMGK 67

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIAN 124
           + A KV+ IE D+   PILKD  S   N  E++  D LKVD ++         P++++AN
Sbjct: 68  I-AEKVVAIEIDRNLIPILKDTLSDLEN-TEVVNQDILKVDIQELVKDKLNGGPVKLVAN 125

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T ++  ++  D   P  + + ++ QKEV +R+ A   +  YG LS+   +    
Sbjct: 126 LPYYITTPIVMKFLEEDI--PVTD-IVVMVQKEVADRMNAIPGTKDYGALSIAVQYYCDT 182

Query: 185 TMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            ++     H+F P P V STVI  H            E   K  + +FG+RRKTL  SL 
Sbjct: 183 EIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEEIFFKTVKASFGQRRKTLLNSLG 242

Query: 243 RLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            LG  N      +L +A I+   R E LSIE+F  ++NI+
Sbjct: 243 GLGFLNKDEIREILKEANIDEKRRGETLSIEEFSVLSNII 282


>gi|241248269|ref|XP_002402915.1| dimethyladenosine transferase, putative [Ixodes scapularis]
 gi|215496424|gb|EEC06064.1| dimethyladenosine transferase, putative [Ixodes scapularis]
          Length = 382

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 144/291 (49%), Gaps = 26/291 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ +L  Y+I   + + QNFL+D  + +++ +++G +    VIE+G GPG LT+ LL L
Sbjct: 73  TVRDLLRMYRIRAMRQLSQNFLMDPKLTRRLVKAAGKIRDHHVIEVGPGPGCLTRPLLEL 132

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119
           GAR+V+VIEKD +F P L+ ++    NRL+II  D      E                P+
Sbjct: 133 GARQVVVIEKDPRFLPSLQLLAEAADNRLKIIMGDVFNYSMEDLIPQELGVPWEGPPPPV 192

Query: 120 RIIANLPYNIGTRLLFNWI--SADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRL 174
            ++ NLP+++ T LL  W+  ++    PF      LTL FQKEV ERI A        RL
Sbjct: 193 HVVGNLPFSVSTPLLVRWLRMASQRKGPFLHGRVPLTLTFQKEVAERIVAPVMHVQRCRL 252

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFG 231
           SV+            +S   FFP P V   V+  +P + P+   P   + ++K+    F 
Sbjct: 253 SVMCQAYCSVQHQLTLSGGSFFPKPDVDVGVVRLVPLVEPVIQQP--FDLVEKVCNCLFN 310

Query: 232 KRRKTLRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNI 275
            R+K L   LK L         ++L+    I+   R   L++E+  RI  +
Sbjct: 311 GRQKYLSNGLKNLFPSRHLDLAKDLVKLVEIDPQTRVVQLTVEEVGRICQV 361


>gi|15896238|ref|NP_349587.1| dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824]
 gi|27151592|sp|Q97EX0|RSMA_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|15026041|gb|AAK80927.1|AE007795_6 Dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824]
          Length = 276

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 148/276 (53%), Gaps = 12/276 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K  + + I+  Y     K +GQNFL D  +L  I E++       +IEIG G G LT+ L
Sbjct: 2   KEFNTRQIVEKYNFRFSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRL 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   A+KV  IE D+   PI+ +   ++ N   +I +DALKVDF         ++++ANL
Sbjct: 62  LE-KAKKVCAIELDESLIPIITNEMKEYDN-FTLIHNDALKVDFNNIIGEEQSVKLVANL 119

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++       ++SLT++ QKEVG+RI A+ ++  YG L++L  +     
Sbjct: 120 PYYVTTPIISKLLNEGYN---FKSLTIMIQKEVGDRIAAKPSTKDYGALTLLVQYYCDVK 176

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLK- 242
           ++  + P  F P PKV S VI       P +    E L   + + AF  RRKTL  ++K 
Sbjct: 177 VVRVVKPSCFIPQPKVDSLVIRLDKLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKG 236

Query: 243 -RLGGENL---LHQAGIETNLRAENLSIEDFCRITN 274
            +L  E+L      AGI++  R E LSIE+F ++++
Sbjct: 237 LKLSSEDLEKAFEAAGIDSKRRGETLSIEEFGKLSD 272


>gi|315037470|ref|YP_004031038.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112]
 gi|312275603|gb|ADQ58243.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112]
          Length = 294

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 20/280 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D   +  I ES+    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  RAIINRYFVKAKKNLGQNFLVDQAAILGIVESAYIQPGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL------KDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIR 120
            KV   E D     IL      K   +    R ++I  D LK +FE+    FF++S PI+
Sbjct: 74  -KVFAYEVDDSLPEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAGFFDMSKPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  +  YG L++    
Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGNKEYGPLTISVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239
                +  ++    F P PKV S V+   P    P     +    + +  F +RRKTL  
Sbjct: 190 EMNVKLALEVKSSSFMPRPKVDSAVVVLTPLAEKPAINDRKHFIWVVKMCFSQRRKTLNN 249

Query: 240 SLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITN 274
           +LK L  +N     L+ + G++  +R E+L+IE F +I +
Sbjct: 250 NLKTLIPDNDQRAALIKELGVDPRVRPEDLTIEQFIKIAS 289


>gi|295089979|emb|CBK76086.1| dimethyladenosine transferase [Clostridium cf. saccharolyticum K10]
          Length = 310

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 151/280 (53%), Gaps = 20/280 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y    +K  GQNFL+D+++L KI  ++G      V+EIG G G +TQ L    A++
Sbjct: 37  IIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE-SAKQ 95

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129
           V+ +E D    PIL +  + + N + +I  D LKVD +K    +N   PI+++ANLPY I
Sbjct: 96  VVAVEIDTNLIPILSETLAVYDN-VTVINQDILKVDIKKLAEEYNGGRPIKVVANLPYYI 154

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     +       +++T++ QKEV +R+     S  YG LS+   +  +  ++ +
Sbjct: 155 TTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQYYAEPYIVAN 211

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR--- 243
           + P+ F P P V S VI    H  P P  +++   + K+ + +F +RRKTL   L     
Sbjct: 212 VPPNCFIPRPNVGSAVIRLTRHKKP-PVEVKNRDLMFKLIRASFNQRRKTLLNGLNNSPE 270

Query: 244 --LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
             +G E +   + Q G+  ++R E L++E F R++++L +
Sbjct: 271 IPIGKEKIAAAIEQLGVPASVRGEALTLEQFARLSDLLEE 310


>gi|208778952|ref|ZP_03246298.1| dimethyladenosine transferase [Francisella novicida FTG]
 gi|208744752|gb|EDZ91050.1| dimethyladenosine transferase [Francisella novicida FTG]
          Length = 262

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       VIEIG G G LT+ LL+  +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKRHDIVIEIGPGLGALTRYLLS-SSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           +E D      L   + Q      I   D LK D     N S+  I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F+P PKV S ++   P +   +       ++I +++F +RRKTL  +LK +  E  +  +
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 254 G--IETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|223934090|ref|ZP_03626038.1| dimethyladenosine transferase [Streptococcus suis 89/1591]
 gi|223897236|gb|EEF63649.1| dimethyladenosine transferase [Streptococcus suis 89/1591]
          Length = 290

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D   +  N + ++  D LK D     + F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFSE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNH 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G++          L  A +E ++R E LS+ DF R+++ L +
Sbjct: 245 FGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287


>gi|323359389|ref|YP_004225785.1| dimethyladenosine transferase [Microbacterium testaceum StLB037]
 gi|323275760|dbj|BAJ75905.1| dimethyladenosine transferase [Microbacterium testaceum StLB037]
          Length = 279

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 147/282 (52%), Gaps = 23/282 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ + +   + P K +GQNF++D N ++KI + +G      V+EIG G G+LT  +L
Sbjct: 8   AAEIRRLATELDVTPTKKLGQNFVVDANTVRKIVQVAGVSASDRVVEIGPGLGSLTLAIL 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
             GA  V+ +E D +    L + ++ H     RL +I  DAL+VD         P  ++A
Sbjct: 68  ETGA-SVVAVEIDHRLAARLPETAAAHEVPAERLMVIDADALRVDELP----GEPSVLVA 122

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L +++  +T+ P+  S  ++ Q EVGER+ A   S  YG  SV   W   
Sbjct: 123 NLPYNVSVPVLLHFL--ETF-PYLRSGVVMVQAEVGERLAAPPGSKVYGAPSVKAAWYGS 179

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQ 239
             +   +S  VF+P P V S ++ F    +  P   E  ++    I   AF +RRK LRQ
Sbjct: 180 WRLAGTVSRQVFWPVPNVDSVLVAF--DRDAEPRGTEEHRRRTFQIVDAAFQQRRKMLRQ 237

Query: 240 SLKR-LGGENL-----LHQAGIETNLRAENLSIEDFCRITNI 275
           +L   LGG        L +AG++  LR E L+++D+ RI  +
Sbjct: 238 ALSGVLGGTAAEASARLERAGVDPTLRGEQLTVDDYARIAAL 279


>gi|302384604|ref|YP_003820426.1| dimethyladenosine transferase [Clostridium saccharolyticum WM1]
 gi|302195232|gb|ADL02803.1| dimethyladenosine transferase [Clostridium saccharolyticum WM1]
          Length = 289

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 151/293 (51%), Gaps = 19/293 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N   +++ I+  Y+   +K  GQNFL+D ++L KI  ++G      V+EIG G G +
Sbjct: 3   TLGNPQKTIE-IIQKYEFAFQKKFGQNFLIDTHVLDKIITAAGVTKDDCVLEIGPGIGTM 61

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118
           TQ L    AR V+ +E D    PILK+  + + N + +I DD LKVD  +    +N   P
Sbjct: 62  TQYLAE-NARHVVAVEIDSNLIPILKETLTDYEN-VTVIHDDILKVDINQIAEQYNGGRP 119

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++      +      +++T++ QKEV +R+     S  YG LS+  
Sbjct: 120 IKVVANLPYYITTPIIMGLFENNVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAV 176

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236
            +  +  ++ ++ P+ F P P V S VI    H  P     ++  + ++ + +F +RRKT
Sbjct: 177 QYYAQPYIVANVPPNCFMPRPNVGSAVIRLTRHKEPAVKAEDAGLMFRLIRASFNQRRKT 236

Query: 237 LRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           L+  L         R      +   G+  ++R E L++E F  ++N  T  +D
Sbjct: 237 LQNGLNNSPEIPYSREQIAEAVESLGLGPSIRGEALTLEQFASLSNYFTKMKD 289


>gi|73946166|ref|XP_533459.2| PREDICTED: similar to transcription factor B1, mitochondrial [Canis
           familiaris]
          Length = 345

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 143/290 (49%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFRLHAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSP-------I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    E+ F   +  P       +
Sbjct: 77  NVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPEILKRPWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   +S    P  +    +TL FQKEV ER+TA   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++  +      +  I    F P P+V   V+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SIMAQYLCNVQHILTIPGQAFVPKPEVDVGVVHFTPLVRPRIEQPFKLVEKVVQNTFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L  L  +         LL  A ++  LR   LS+  F  + ++
Sbjct: 257 RKYCYRGLGMLFPQIHRVESTGKLLELADVDPTLRPSQLSVSHFKSLCDV 306


>gi|319759070|gb|ADV71012.1| dimethyladenosine transferase [Streptococcus suis JS14]
          Length = 290

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D   +  N + ++  D LK D     + F N   PI+++ANLP
Sbjct: 69  GEVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTSILMHLIESKI--PFSE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNH 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G++          L  A +E ++R E LS+ DF R+++ L +
Sbjct: 245 FGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287


>gi|194227549|ref|XP_001493452.2| PREDICTED: similar to transcription factor B1, mitochondrial [Equus
           caballus]
          Length = 348

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 142/290 (48%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFRLHAVKQLSQNFLLDLRLTDKIVRKAGTLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
           G  +++V+EKD +F P L+ +S   P +L I+  D L    E+ F  S        P  +
Sbjct: 77  GVAELLVVEKDSRFLPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRHWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W+   +    PF      +TL FQKEV ER+TA   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSRRDGPFAYGRTQMTLTFQKEVAERLTATTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++  +      +  I    F P P+V   V+ F P   P I    + ++K+ Q  F  R
Sbjct: 197 SIMAQYLCSVQHVLTIPGRAFVPKPEVDVGVVRFTPLTQPRIEQPFQLVEKVVQNVFQFR 256

Query: 234 RKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK   + L  L  E         LL  A ++  LR   LS+  F  + ++
Sbjct: 257 RKYCHRGLGMLFPEAQRLESTGKLLQLADVDPTLRPSQLSVSHFKSLCDV 306


>gi|310639501|ref|YP_003944259.1| ribosomal RNA small subunit methyltransferase a [Paenibacillus
           polymyxa SC2]
 gi|309244451|gb|ADO54018.1| Ribosomal RNA small subunit methyltransferase A [Paenibacillus
           polymyxa SC2]
          Length = 294

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 147/282 (52%), Gaps = 19/282 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+  +    KK +GQNFL+D NIL KI  ++G  D    +EIG G G LT+ L    A
Sbjct: 14  KEIIQRHGFSFKKSLGQNFLIDQNILSKIVNAAGLDDTKGALEIGPGIGALTEKLAQ-SA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126
           + V  +E DQ+  PIL+++ + +   +++   D LK+D  + F       S + ++ANLP
Sbjct: 73  KAVTAVEIDQRLLPILEEVLAPY-EHVKVRHGDVLKLDLREVFAADFADVSKVSVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   +  D  P   E++ ++ QKEV ER+ A   +  YG LS+   + ++  +
Sbjct: 132 YYVTTPILMRLLE-DKLP--LENIVVMIQKEVAERMAASPGTKDYGSLSIAVQYYSEPEL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK-- 242
           +  +   VF P P V S VI       P    ++     ++   AF +RRKT+  +LK  
Sbjct: 189 VCTVPNTVFIPQPNVDSAVIRLRVREVPPVEVVDEKHFFEVVHAAFAQRRKTISNNLKSR 248

Query: 243 ------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 R   E LL QA IE + R E LSIE+F R++ +L +
Sbjct: 249 FFTKENRDTLEPLLQQADIEPSRRGETLSIEEFARLSAVLLE 290


>gi|301299614|ref|ZP_07205875.1| dimethyladenosine transferase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852801|gb|EFK80424.1| dimethyladenosine transferase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 297

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y +  KK +GQNFL D+NILK I  ++   +   VIEIG G G LT+ L    A
Sbjct: 16  RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAK-RA 74

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
            KV+ +E D +  P+L D  S + N +E+I  D LK D E      F     ++++ANLP
Sbjct: 75  NKVMALEIDDRLLPVLADTLSPYEN-VEVIHQDILKADLEALIAEHFEPGHKLKLVANLP 133

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + + +      +E++ ++ QKEV ER+ A   +  YG LSV   +   + +
Sbjct: 134 YYITTPILMHLLDSGIE---FETIVVMMQKEVAERLAANSGTKAYGSLSVAVQYEMDSEI 190

Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S +I      + P  P   +  KK+ + +F  RRK+L  +L+ L
Sbjct: 191 AFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKSLWNNLQSL 250

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G++          L  A I+ ++RAE L++ DF  +++ L
Sbjct: 251 YGKDPETKEKMLQALEVADIKQSIRAEKLTVADFINLSDAL 291


>gi|89256872|ref|YP_514234.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315251|ref|YP_763974.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134302453|ref|YP_001122423.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156503047|ref|YP_001429112.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009234|ref|ZP_02274165.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187932059|ref|YP_001892044.1| dimethyladenosine transferase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254368148|ref|ZP_04984168.1| dimethyladenosine transferase, kasugamycin resistance [Francisella
           tularensis subsp. holarctica 257]
 gi|254369747|ref|ZP_04985757.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953903|ref|ZP_06558524.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312728|ref|ZP_06803470.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|119365026|sp|Q2A218|RSMA_FRATH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122324752|sp|Q0BKP7|RSMA_FRATO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221665|sp|A7NDV3|RSMA_FRATF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221667|sp|A4IZF1|RSMA_FRATW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732583|sp|B2SDQ1|RSMA_FRATM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|89144703|emb|CAJ80034.1| dimethyladenosine transferase , kasugamycin resistance [Francisella
           tularensis subsp. holarctica LVS]
 gi|115130150|gb|ABI83337.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134050230|gb|ABO47301.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134253958|gb|EBA53052.1| dimethyladenosine transferase, kasugamycin resistance [Francisella
           tularensis subsp. holarctica 257]
 gi|156253650|gb|ABU62156.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122706|gb|EDO66835.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712968|gb|ACD31265.1| dimethyladenosine transferase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 262

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 97/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL+  +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           +E D      L   + Q      I   D LK D     N S+  I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F+P PKV S ++   P +   +       ++I +++F +RRKTL  +LK +  E  +  +
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 254 G--IETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|114609911|ref|XP_001143057.1| PREDICTED: transcription factor B1, mitochondrial isoform 1 [Pan
           troglodytes]
          Length = 288

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 136/271 (50%), Gaps = 19/271 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SP--I 119
              +++V+EKD +F P L+ +S   P +L I+  D L    EK F+ S        P  +
Sbjct: 77  DVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+ A   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256

Query: 234 RK----TLRQSLKRLGGENLLHQAGIETNLR 260
           RK     LR+ LKR   +N   +     N R
Sbjct: 257 RKYCHRGLREELKRRKSKNEEKEEDDAENYR 287


>gi|114564241|ref|YP_751755.1| dimethyladenosine transferase [Shewanella frigidimarina NCIMB 400]
 gi|122298930|sp|Q07YJ8|RSMA_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|114335534|gb|ABI72916.1| dimethyladenosine transferase [Shewanella frigidimarina NCIMB 400]
          Length = 268

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 148/287 (51%), Gaps = 27/287 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D  ++  I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH-----LGHTA---RKRFGQNFLTDQGVISSIVGAIAPDNDHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQ------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           + +  +    + V+E D+      Q+ P+LKD       +L I Q DAL+ DF +     
Sbjct: 53  EPVADM-IDNLTVVELDRDLVKRLQYHPVLKD-------KLTIHQGDALQFDFGQLQQPG 104

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +++  NLPYNI T L+F+      +    E++  + QKEV  R++A   +  YGRL+V
Sbjct: 105 KKMKVFGNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGTKAYGRLTV 161

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPC-CLESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P+PKV S VI  +P  + P PC  ++ L+ +   AF  RR
Sbjct: 162 MAQYYCQVVPVLEVPPTSFTPAPKVDSAVIRLLPFEVKPWPCKNVDVLRHLVTTAFNMRR 221

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           KTLR +LK L  +    +  I+ +LR E +S+  +  + N+L D +D
Sbjct: 222 KTLRNNLKTLLSDEDFAELQIDASLRPEQISVPQYVAMANMLCDKKD 268


>gi|210617032|ref|ZP_03291367.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787]
 gi|210149555|gb|EEA80564.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787]
          Length = 290

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 152/287 (52%), Gaps = 21/287 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  ++++ IL  Y    +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 5   TLGNPQNTIE-ILQKYDFSFQKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118
           TQ  L   AR+V+ +E D+   PIL+D    + N + +I DD LKVD  K    +N + P
Sbjct: 64  TQ-YLACAARQVVAVEIDKALIPILEDTLQAYDN-VTVINDDVLKVDIPKLAKEYNDNKP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +       ES+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---IESITVMVQKEVADRMQVGPGTKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235
            +  +  ++ ++ P+ F P PKV S VI    H  P P  +E+ K   +I + +F +RRK
Sbjct: 179 QYYAEPYIVANVPPNCFMPRPKVGSAVIRLTRHKEP-PVQVENEKLMFQIIRASFNQRRK 237

Query: 236 TLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITN 274
           TL   L      +L        +   G   ++R E L++++F  +++
Sbjct: 238 TLANGLNNSPEIHLPKEVITTAIESLGKGPSVRGEALTLQEFAVLSD 284


>gi|290581127|ref|YP_003485519.1| dimethyladenosine transferase [Streptococcus mutans NN2025]
 gi|254998026|dbj|BAH88627.1| dimethyladenosine transferase [Streptococcus mutans NN2025]
          Length = 291

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 144/281 (51%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +   IL D      N ++++ +D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVSILADTLRDFDN-IKVVNEDILKSDLQTRIKEFANPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++ + AF  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMTRREQPLVQVQDEDFFFRVGKAAFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         E  L  A I+ ++R E L+I DF R+ + L
Sbjct: 245 FGKSKEVKVKLEQALEAADIKPSIRGEALTITDFARLADAL 285


>gi|227824447|ref|ZP_03989279.1| dimethyladenosine transferase [Acidaminococcus sp. D21]
 gi|226904946|gb|EEH90864.1| dimethyladenosine transferase [Acidaminococcus sp. D21]
          Length = 287

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 95/270 (35%), Positives = 145/270 (53%), Gaps = 12/270 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  + +  KK  GQNFL++ ++++ IAE +    G  V+E+G G G LTQ L   GA
Sbjct: 19  RYILDTFGLHTKKRFGQNFLINESVVRGIAEKAKIGPGDLVLEVGPGIGTLTQALAETGA 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
             V  +E D+   PIL+     + N +EII  D LKVD  K      P  + ANLPY I 
Sbjct: 79  -NVKSVEIDESLLPILRKTLEGYDN-VEIIHGDILKVDL-KDITGGKPFTVAANLPYYIT 135

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++F+ + A+   P  + + ++ QKEV ER+ A+  +  YG LS+   + ++  +   +
Sbjct: 136 TPIIFSLLEANL--PL-KRIVVMVQKEVAERMAARPGTKAYGPLSLALQYYSEPQLAIPV 192

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRL----- 244
             H F P+PKV S V+      +PI     SL  K+ + AF +RRK LR  LK +     
Sbjct: 193 PAHDFMPAPKVDSMVVVCEKRESPIVNVDASLYVKVVRAAFSQRRKMLRTCLKSMVRPGD 252

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITN 274
             E  + +AGIE   R E+L+IE+F ++  
Sbjct: 253 TAEAWMARAGIEPTRRGESLTIEEFGKLAE 282


>gi|89101161|ref|ZP_01173994.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911]
 gi|89084129|gb|EAR63297.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911]
          Length = 293

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 145/282 (51%), Gaps = 22/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  Y    KK +GQNFL+D NIL +I + +   +G   IEIG G G LT+ L    +
Sbjct: 12  RAILEKYGFSFKKSLGQNFLIDTNILNRIVDHAELREGSGAIEIGPGIGALTEQLAKR-S 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
            KV+  E DQ+  PILK+  + +PN  E+I  D LK D     E+ F     + ++ANLP
Sbjct: 71  EKVVAFEIDQRLLPILKETLAPYPN-AEVIHQDVLKADVKTTIEERFAPGQDLMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +  P     +  + QKEV +RI+A+  S  YG LS+   + T+A  
Sbjct: 130 YYVTTPIIMKLLE-EKLP--IRGIVCMLQKEVADRISAKPGSKDYGSLSIAVQYYTEAET 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL-- 241
           +  +   VF P P V S VI       P P  ++      ++T+ +F +RRKT+  +L  
Sbjct: 187 VMIVPKTVFVPQPNVDSAVIRLTRREQP-PVLVKDEAFFFQVTKASFAQRRKTILNNLTS 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                  K+      L  AGIE + R E LSI +F R+++ L
Sbjct: 246 QLHEGKQKKEAILAALETAGIEPSRRGETLSIGEFGRLSDEL 287


>gi|295115506|emb|CBL36353.1| dimethyladenosine transferase [butyrate-producing bacterium SM4/1]
          Length = 310

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 151/280 (53%), Gaps = 20/280 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y    +K  GQNFL+D+++L KI  ++G      V+EIG G G +TQ L    A++
Sbjct: 37  IIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE-SAKQ 95

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129
           V+ +E D    PIL +  + + N + +I  D LKVD +K    +N   PI+++ANLPY I
Sbjct: 96  VVAVEIDTNLIPILSETLAGYDN-VTVINQDILKVDIKKLAEEYNGGRPIKVVANLPYYI 154

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     +       +++T++ QKEV +R+     S  YG LS+   +  +  ++ +
Sbjct: 155 TTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQYYAEPYIVAN 211

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR--- 243
           + P+ F P P V S VI    H  P P  +++   + K+ + +F +RRKTL   L     
Sbjct: 212 VPPNCFIPRPNVGSAVIRLTRHKKP-PVEVKNRDLMFKLIRASFNQRRKTLLNGLNNSPE 270

Query: 244 --LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
             +G E +   + Q G+  ++R E +++E F R++++L +
Sbjct: 271 IPIGKEKIAAAIEQLGVPASVRGEAMTLEQFARLSDLLEE 310


>gi|313896764|ref|ZP_07830312.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974681|gb|EFR40148.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 291

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 147/275 (53%), Gaps = 14/275 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL+ + +   K +GQNFL+D  +++ I E++      TV+EIG G G LTQ L   GAR 
Sbjct: 17  ILNAFHLRASKRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETGAR- 75

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIG 130
           V+ +E D++   +L +    + N + ++  D LK++  +   +    R  ++ANLPY I 
Sbjct: 76  VVAVELDKKLPAVLAETLRGYDN-VTVVPGDILKINIPETLGLKEGQRFKVVANLPYYIT 134

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +     P   E L  + QKEV  R+TAQ  S  YG LS+   + T   M+ D+
Sbjct: 135 TPIIMTLLE-QRLP--IERLVTMVQKEVAMRMTAQPGSKDYGALSLAVQYFTAPRMVMDV 191

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245
            P  F P+P+VTS V+  I   +P   P   +   ++ + AFG+RRKTL  +L   G   
Sbjct: 192 PPRAFRPAPEVTSAVVACIVRESPSVAPRSEKLFFRLIRAAFGQRRKTLPNALVGAGLTK 251

Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              +  L  AGI  + R E LS++DF RI++ + D
Sbjct: 252 DAAQAALRAAGIAGSTRGEQLSLQDFARISDAVGD 286


>gi|29349451|ref|NP_812954.1| dimethyladenosine transferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570180|ref|ZP_04847589.1| dimethyladenosine transferase [Bacteroides sp. 1_1_6]
 gi|298384949|ref|ZP_06994508.1| dimethyladenosine transferase [Bacteroides sp. 1_1_14]
 gi|33516931|sp|Q8A0H8|RSMA_BACTN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|29341360|gb|AAO79148.1| dimethyladenosine transferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840561|gb|EES68643.1| dimethyladenosine transferase [Bacteroides sp. 1_1_6]
 gi|298262093|gb|EFI04958.1| dimethyladenosine transferase [Bacteroides sp. 1_1_14]
          Length = 267

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 136/257 (52%), Gaps = 8/257 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + V+E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPVLEVGPGMGVLTQFLVK-KDRLVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P 
Sbjct: 120 ENKDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K++ +  F +RRKTLR S+K + G++         
Sbjct: 177 PKVKSAVIRMTRNDTKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236

Query: 258 NLRAENLSIEDFCRITN 274
           N R E LS+E+F  +TN
Sbjct: 237 NKRPEQLSVEEFISLTN 253


>gi|238797489|ref|ZP_04640987.1| Dimethyladenosine transferase [Yersinia mollaretii ATCC 43969]
 gi|238718630|gb|EEQ10448.1| Dimethyladenosine transferase [Yersinia mollaretii ATCC 43969]
          Length = 232

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 133/235 (56%), Gaps = 18/235 (7%)

Query: 51  VIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDAL 105
           ++EIG G G LT+    + AR  ++ VIE D+     L    + HP   ++L I Q DA+
Sbjct: 1   MVEIGPGLGALTE---PVAARMDRMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAM 53

Query: 106 KVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           KV+F +   ++  P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A
Sbjct: 54  KVNFAELAELAGQPLRVFGNLPYNISTPLMFHLFS---YTNAIRDMHFMLQKEVVNRLVA 110

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESL 222
             NS  YGRL+V+  +      + ++ P  F P+PKV S V+  IPH+N P P   +  L
Sbjct: 111 GPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRML 170

Query: 223 KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            +IT +AF +RRKT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 171 TRITTQAFNQRRKTVRNSLGDLFTAEQLIELGIDPILRAENISVAQYCKLANWLS 225


>gi|163802665|ref|ZP_02196556.1| dimethyladenosine transferase [Vibrio sp. AND4]
 gi|159173553|gb|EDP58373.1| dimethyladenosine transferase [Vibrio sp. AND4]
          Length = 270

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 139/263 (52%), Gaps = 13/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +   L G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELADKLTIHEGDAMRFDFSQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHKD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYFCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+ + P P   L  L+++ +E F +RRKT+R   K L    +L + G+ 
Sbjct: 184 PKVDSAVVRLMPYDVLPHPAKDLRLLERVCREGFNQRRKTVRNCYKSLLSTEVLEELGVN 243

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            ++R ENL+++ F  + N L DN
Sbjct: 244 PSMRPENLTLQQFVAMANWLADN 266


>gi|311087037|gb|ADP67117.1| dimethyladenosine transferase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 308

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 143/282 (50%), Gaps = 26/282 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT N K H            P K  GQNFL++ + +K I +        T++EIG G   
Sbjct: 36  MTKNFKKH-----------FPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119
           LT+ +  L   ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     I
Sbjct: 85  LTKPMCEL-LEELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141

Query: 120 RIIANLPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           RI  NLPYNI T L   LF  I         + +  + QKEV ER+ +   +  YGRLS+
Sbjct: 142 RIFGNLPYNISTSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSI 195

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234
           ++ +     ++ ++SP  F P PKV S  I+  PH N       +  L  IT++AF  RR
Sbjct: 196 ISQYYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRR 255

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           K LR SLK L  E  L +  I +NLRAEN+S+  +C++ N L
Sbjct: 256 KILRHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYL 297


>gi|46200223|ref|YP_005890.1| dimethyladenosine transferase [Thermus thermophilus HB27]
 gi|62900548|sp|Q72GC7|RSMA_THET2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|46197851|gb|AAS82263.1| dimethyladenosine transferase [Thermus thermophilus HB27]
          Length = 271

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 19/281 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+      S++ +L  + +   K  GQNFL+    L++I E++    G  V E+G G G 
Sbjct: 1   MSKLASPQSVRALLERHGLFADKRFGQNFLVSEVHLRRIVEAARPFTG-PVFEVGPGLGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA +V  IEKD +  P+L++  S  P RL  +  DAL   +E+    S    
Sbjct: 60  LTRALLEAGA-EVTAIEKDLRLRPVLEETLSGLPVRL--VFQDALLYPWEEVPQGSL--- 113

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY+I T L+   +    +      L  L QKEV ER+TA+  +P YG L++    
Sbjct: 114 LVANLPYHIATPLVTRLLKTGRF----ARLVFLVQKEVAERMTARPKTPAYGVLTLRVAH 169

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
              A  +FD+ P  FFP PKV S+++   P   P       L ++ + AFGKRRKTL  +
Sbjct: 170 HAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGAPDDP---GLFRLVEAAFGKRRKTLLNA 226

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L   G      E  L   G+   +RAE L +E F R+   L
Sbjct: 227 LAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGL 267


>gi|238755736|ref|ZP_04617069.1| Dimethyladenosine transferase [Yersinia ruckeri ATCC 29473]
 gi|238706028|gb|EEP98412.1| Dimethyladenosine transferase [Yersinia ruckeri ATCC 29473]
          Length = 236

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/237 (37%), Positives = 130/237 (54%), Gaps = 12/237 (5%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           + G  V+EIG G G LT+    + AR   + VIE D+     L     Q  ++L I Q D
Sbjct: 1   MPGEAVVEIGPGLGALTE---PVAARMDHMTVIELDRDLAARLA-CHPQLKDKLTIHQQD 56

Query: 104 ALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           A+KV+F +    S  P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+
Sbjct: 57  AMKVNFAELAEQSGKPLRVFGNLPYNISTPLMFHLFS---YTQAILDMHFMLQKEVVNRL 113

Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LE 220
            A  NS  YGRL+V+  +      + ++ P  F P+PKV S V+  IPH+N P P   + 
Sbjct: 114 VAGPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHINMPNPVGDVR 173

Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            L +IT +AF +RRKT+R SL  L     L + G+   LRAEN+S+  +C++ N L+
Sbjct: 174 MLSRITTQAFNQRRKTVRNSLGDLFTPEQLTELGVNPTLRAENISVAQYCKLANWLS 230


>gi|153815218|ref|ZP_01967886.1| hypothetical protein RUMTOR_01452 [Ruminococcus torques ATCC 27756]
 gi|317502323|ref|ZP_07960492.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089927|ref|ZP_08338819.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847477|gb|EDK24395.1| hypothetical protein RUMTOR_01452 [Ruminococcus torques ATCC 27756]
 gi|316896279|gb|EFV18381.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403159|gb|EGG82720.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 292

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 152/291 (52%), Gaps = 21/291 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y  I +K  GQNFL+D ++L KI  ++       V+EIG G G +
Sbjct: 5   TLGNPQNTI-AVLQKYNFIFQKKFGQNFLIDTHVLDKIIRAAEIGKDDLVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ  L+  A KVI +E D+   PIL+D    + N + +I +D LKVD  K     N   P
Sbjct: 64  TQ-YLSCAAGKVIAVEIDRALIPILEDTLDGYDN-VRVINEDVLKVDIRKLVEEENEGRP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++      +   P  +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 IKVVANLPYYITTPIIMGLF--ENHVPI-KSITVMVQKEVADRMQVGPGTKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235
            +  K  ++ ++ P+ F P PKV S VI    H +P P  +   K   ++ + +F +RRK
Sbjct: 179 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERHEHP-PVEVRDEKLMFRVIRASFNQRRK 237

Query: 236 TLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           TL   LK        +   E  + + G   ++R E L++ +F ++ N   D
Sbjct: 238 TLANGLKNSPEIDFSKEEIEGAIEKLGKGASVRGEALTLAEFAQLANYFCD 288


>gi|313680695|ref|YP_004058434.1| dimethyladenosine transferase [Oceanithermus profundus DSM 14977]
 gi|313153410|gb|ADR37261.1| dimethyladenosine transferase [Oceanithermus profundus DSM 14977]
          Length = 273

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 146/281 (51%), Gaps = 18/281 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M    K  +++ +L  Y +   + +GQNFL+D  +L  I  ++    G  V E+G G G 
Sbjct: 1   MPSLTKPSTVRALLERYGLAADRRLGQNFLVDAGLLDVIVRTADVRPGQEVWEVGPGLGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L   GAR V  IEKD +  P+L++  +  P  +E+   DAL  D+ +    S    
Sbjct: 61  LTRALALAGAR-VHAIEKDTRLEPVLRETLAGLP--VELSFADALDCDWSEVPPGSL--- 114

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
            ++NLPYN+ T LL   +    +      L +L Q+EV ER+ A   +P YG LS+    
Sbjct: 115 FVSNLPYNVATPLLSELLRQGRF----GRLVVLLQREVAERLAAAPGTPAYGLLSLRAAH 170

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +   + D  P  F+P PKVTST++  + H    P   E L ++ + AF  RRKTLR++
Sbjct: 171 HARVRKVRDFPPEAFYPRPKVTSTLVE-LEHTG-APDDPE-LFRLIEAAFAARRKTLRKN 227

Query: 241 LKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276
           L++ G         L +AG+E  +RAE L IEDF ++   L
Sbjct: 228 LEQAGWPRDRVLAALAEAGLEPMVRAERLGIEDFRKLHAAL 268


>gi|227891849|ref|ZP_04009654.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741]
 gi|227866312|gb|EEJ73733.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741]
          Length = 296

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 148/281 (52%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y +  KK +GQNFL D+NILK I  ++   +   VIEIG G G LT+ L    A
Sbjct: 15  RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAK-RA 73

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
            KV+ +E D +  P+L D  S + N +E+I  D LK D E      F     ++++ANLP
Sbjct: 74  NKVMALEIDDRLLPVLADTLSPYEN-VEVIHQDILKADLEALIAEHFEPGHKLKLVANLP 132

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + + +      +E++ ++ QKEV ER+ A   +  YG LSV   +   + +
Sbjct: 133 YYITTPILMHLLDSGIE---FETIVVMMQKEVAERLAANPGTKAYGSLSVAVQYEMDSEI 189

Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S +I      + P  P   +  KK+ + +F  RRK+L  +L+ L
Sbjct: 190 AFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKSLWNNLQSL 249

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G++          L  A I+ ++RAE L++ DF  +++ L
Sbjct: 250 YGKDSETKEKMLQALEVADIKQSIRAEKLTVADFINLSDAL 290


>gi|304410422|ref|ZP_07392040.1| dimethyladenosine transferase [Shewanella baltica OS183]
 gi|307304514|ref|ZP_07584264.1| dimethyladenosine transferase [Shewanella baltica BA175]
 gi|304350906|gb|EFM15306.1| dimethyladenosine transferase [Shewanella baltica OS183]
 gi|306911916|gb|EFN42340.1| dimethyladenosine transferase [Shewanella baltica BA175]
          Length = 268

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 148/286 (51%), Gaps = 27/286 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H     L H     +K  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH-----LGH---TARKRFGQNFLTDGNVIDRIVGAISPDNHHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFF------PILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           + +       + V+E D+         P+LKD       +L I Q DAL+ DF +     
Sbjct: 53  EPVAE-AVDNLTVVELDRDLVERLHHHPVLKD-------KLTIHQGDALQFDFGQLSVPG 104

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +++  NLPYNI T L+F+      +    E++  + QKEV  R++A      YGRL+V
Sbjct: 105 KKMKVFGNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTV 161

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ PH F P+PKV S V+  +P+ + P  C  +  L+ +   AF  RR
Sbjct: 162 MAQYFCQVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFSCKDVTVLRHLCTTAFNMRR 221

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTLR +LK +  ++   Q GI+++ R E +S++ +  + N++ D +
Sbjct: 222 KTLRNNLKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267


>gi|270294487|ref|ZP_06200689.1| dimethyladenosine transferase [Bacteroides sp. D20]
 gi|270275954|gb|EFA21814.1| dimethyladenosine transferase [Bacteroides sp. D20]
          Length = 264

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/255 (36%), Positives = 138/255 (54%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++      I ++E+G G G LTQ LL    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLKVAQDIADTVDVCPEIPILEVGPGMGVLTQFLLP-KERNVKVVELDY 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++   Q  +   II+DD LK++ ++ F   + + +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFGGQAFV-LTGNYPYNISSQIFFKMLEY 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   S  YG LSVL     K   +F +  HVF P PK
Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPPPK 178

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI  + +      C E L K++ +  F +RRKTLR S+K + G++      +  N 
Sbjct: 179 VKSAVIRMMRNETHDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+++F ++TN
Sbjct: 239 RPEQLSVKEFIQLTN 253


>gi|312623284|ref|YP_004024897.1| dimethyladenosine transferase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203751|gb|ADQ47078.1| dimethyladenosine transferase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 282

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 147/270 (54%), Gaps = 13/270 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L  +L  Y + P K +GQNFL+D N+++KI   S + +G  VIEIGAGPG LT + L  
Sbjct: 9   DLLNLLEKYGLSPNKKLGQNFLVDENVVRKIILFSQA-EGKEVIEIGAGPGTLT-VYLAK 66

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A+KV  +E D++   +LKD+     N ++I+  D L+++ +   N  + + +I NLPY 
Sbjct: 67  TAQKVFAVEIDKKILNVLKDVCQSLSN-VQIVNSDFLELNVKNLTN-GNKVYVIGNLPYY 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + +++LF            E  T++ QKEV +R+ A+  +  YG L+V   +  +    F
Sbjct: 125 VTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIEDYF 181

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR---LG 245
            +S +VF+P P+V S V+     +       +   KI    F  RRKT+  +L     + 
Sbjct: 182 YVSKNVFYPKPEVDSAVLRARFKVEEPNVDEKKFFKIVHACFSTRRKTILNALSNQLDIA 241

Query: 246 GENL---LHQAGIETNLRAENLSIEDFCRI 272
            + L   +  AG++ NLRAE+LS++D+ R+
Sbjct: 242 KDELKKIILMAGLDENLRAEDLSLDDYIRL 271


>gi|313200361|ref|YP_004039019.1| dimethyladenosine transferase [Methylovorus sp. MP688]
 gi|312439677|gb|ADQ83783.1| dimethyladenosine transferase [Methylovorus sp. MP688]
          Length = 254

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/264 (35%), Positives = 137/264 (51%), Gaps = 15/264 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K + KK  GQNFL D  I+  +  +        ++EIG G G LTQ LL  L    V+ I
Sbjct: 2   KHVAKKRFGQNFLTDQAIITSLVNAIAPQPNDLMVEIGPGLGALTQPLLQRLENLHVVEI 61

Query: 77  EKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           ++D     I+  +   + P ++ I   DALK DF    +I+  +R++ NLPYNI T +LF
Sbjct: 62  DRD-----IIAWMEKHYAPGKVTIHNIDALKFDFA---SIAPRLRVVGNLPYNISTPILF 113

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +           +  + QKEV ER+ A+ +S  YGRLSV+  +      +F + P  F
Sbjct: 114 HLLDNVA---HIIDMHFMLQKEVVERMVAEPSSAAYGRLSVMLQYHLHMEYLFTVPPEAF 170

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S  +  +PH   P P    +L  ++   AFG+RRKTLR +LK L  +      
Sbjct: 171 DPAPKVESAFVRCVPHTELPFPAKDYALFSRVVATAFGQRRKTLRNTLKGLLDDAGFEAL 230

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           GI++  RAENL +  F  I N L 
Sbjct: 231 GIDSQWRAENLPLSSFVSIANYLV 254


>gi|295698578|ref|YP_003603233.1| dimethyladenosine transferase [Candidatus Riesia pediculicola USDA]
 gi|291157440|gb|ADD79885.1| dimethyladenosine transferase [Candidatus Riesia pediculicola USDA]
          Length = 263

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 139/264 (52%), Gaps = 11/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D  +  +I          ++IEIG G GNLT  +  +  +  I IE D  
Sbjct: 4   KKRFGQNFLSDSIVQDRIVTYFAPKSDQSIIEIGTGLGNLTIPIYHVIKKSFITIEIDAD 63

Query: 82  FFPILKDISSQHPNRLEIIQ---DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
              ++K + S +P+  ++++    D +K+DF+     S   RII +LPYNI   ++  + 
Sbjct: 64  ---LIKHLLSFYPDIFQVVKILNSDIMKLDFDLIMKKSLKYRIIGSLPYNIAIPIMVRFF 120

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S          +  + QKE+ +R+ A  N   YGR SVL  +      +F ISP+ F P 
Sbjct: 121 SYHKQ---LIDMHFVLQKEIVDRLIASPNIKLYGRTSVLFQYHFSINPIFHISPYSFRPI 177

Query: 199 PKVTSTVIHFIPHLNPI-PCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV ST + F P+ N I P C +  LK IT+ AF +RRK +  SLK         Q  I+
Sbjct: 178 PKVNSTFVRFKPYKNRIYPICEVNLLKLITRVAFHQRRKKILNSLKEFFNIEDYSQLCID 237

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
            N+RAENL+I ++C++TN L+  +
Sbjct: 238 YNMRAENLTILEYCKLTNWLSKKE 261


>gi|24378846|ref|NP_720801.1| dimethyladenosine transferase [Streptococcus mutans UA159]
 gi|27151562|sp|P59156|RSMA_STRMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|24376723|gb|AAN58107.1|AE014882_10 dimethyladenosine transferase [Streptococcus mutans UA159]
          Length = 291

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 144/281 (51%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKLFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++ +D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-IKVVNEDILKSDLQTRIKEFANPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+AQ ++  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAQPSTKAYGSLSIAVQYYMTAKI 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +      + + AF  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMTRREQPLVQVQDEDFFFCVGKAAFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         E  L  A I+ ++R E L+I DF R+ + L
Sbjct: 245 FGKSEEVKVKLEQALEAADIKPSIRGEELTITDFARLADAL 285


>gi|315222376|ref|ZP_07864281.1| dimethyladenosine transferase [Streptococcus anginosus F0211]
 gi|315188537|gb|EFU22247.1| dimethyladenosine transferase [Streptococcus anginosus F0211]
          Length = 291

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++   + + VIEIG G G LT+ L    A
Sbjct: 10  RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFLAENTA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LK D +    +F N + PI+++ANLP
Sbjct: 70  -EVMAFEIDDRLVPILADTLRDFDN-VRVVNEDILKSDLQARIKEFANPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ Q+EV +RI+AQ NS  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNSKSYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPAVGVKDEAFFFKVSKASFTHRRKTLWNNLTSY 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E+ L  A +  ++R E L +++F  + + L D
Sbjct: 245 FGKSNEVKTKLESALDNAELSPSVRGEALDLQEFAHLADSLYD 287


>gi|254372526|ref|ZP_04988015.1| dimethyladenosine transferase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570253|gb|EDN35907.1| dimethyladenosine transferase [Francisella novicida GA99-3549]
          Length = 262

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL+  +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           +E D      L   + Q      I   D LK D     N S+  I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F+P PKV S ++   P +   +       ++I +++F +RRKTL  +LK +  E  +  +
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKGILKERKIDPS 236

Query: 254 G--IETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|71065521|ref|YP_264248.1| dimethyladenosine transferase [Psychrobacter arcticus 273-4]
 gi|119365049|sp|Q4FT44|RSMA_PSYA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71038506|gb|AAZ18814.1| dimethyladenosine transferase [Psychrobacter arcticus 273-4]
          Length = 287

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 13/277 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           + S+   L   K  P+K  GQNFL D +++++I ES        +IEIG G G LT+ LL
Sbjct: 8   AQSISNSLRAAKHQPRKRFGQNFLHDRSVIREIVESIRLERDDNLIEIGPGMGALTEPLL 67

Query: 67  T-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIAN 124
             + A  V+ +++D      ++  ++ HPN   II+D+A+ VD+ + ++     +R++ N
Sbjct: 68  AEVDAMTVVELDRDLADSLRIRIGANSHPN-FTIIKDNAMHVDYRELYSEERGKLRVVGN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI T +LF+ +S   +    E +  + QKEV ERITA   S  YGRLSV+  +    
Sbjct: 127 LPYNISTPILFHLLS---YADVIEDMHFMLQKEVVERITADVGSKTYGRLSVIMQYHCHT 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLK 242
             +  +    F P PKVTS V    PH + P+    E     + +E F  RRKTLR   K
Sbjct: 184 DYLLTVPRGAFNPPPKVTSAVFRLTPHIIKPVVAEDEEYFALVVRETFNHRRKTLRAIFK 243

Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITN 274
           +        E+      I+   R E L+++DF  ++N
Sbjct: 244 KSTLLPTLSEDDFAACAIDPQARPETLNVKDFVNLSN 280


>gi|88859121|ref|ZP_01133762.1| dimethyladenosine transferase [Pseudoalteromonas tunicata D2]
 gi|88819347|gb|EAR29161.1| dimethyladenosine transferase [Pseudoalteromonas tunicata D2]
          Length = 268

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 137/265 (51%), Gaps = 15/265 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D  I+ KI  +        ++EIG G G +T+ +  +    + V+E D+ 
Sbjct: 12  KKRFGQNFLNDAMIIDKIVTAIDPKPEDCLVEIGPGLGAITEPVTDIAGH-LTVVELDKD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L      HP    +L + Q DA++ DF      +  +++  NLPYNI T LLF+  
Sbjct: 71  LVERL----IHHPFLGPKLTVHQGDAMRFDFSTLVEENKKLKVFGNLPYNISTPLLFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    E +  + QKEV +R+ A  +   YGRLSV+T +   A  + ++ P  F P+
Sbjct: 127 D---YAEHIEHMHFMLQKEVVKRMVASPDCKAYGRLSVMTQYYCHAIPVIEVPPECFKPA 183

Query: 199 PKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           PKV S V+  IP   P      C + L  +  EAF +RRKT+R SL  L   + + + G+
Sbjct: 184 PKVDSAVVRLIPK-KPEQLRAKCTKILNTVCLEAFNQRRKTIRNSLSNLLTTDDMIELGL 242

Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280
           ++  RAENLS++ +  I N L DN+
Sbjct: 243 DSKARAENLSLDQYIDIANWLYDNK 267


>gi|150014951|ref|YP_001307205.1| dimethyladenosine transferase [Clostridium beijerinckii NCIMB 8052]
 gi|149901416|gb|ABR32249.1| dimethyladenosine transferase [Clostridium beijerinckii NCIMB 8052]
          Length = 281

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 12/283 (4%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+ K    + ++  Y     K +GQNFL+D ++L  I   +   +   +IEIG G G LT
Sbjct: 1   MDLKDIKTQELVKKYNFKFSKSLGQNFLVDDSVLDDIVNGAEVNNEDFIIEIGPGVGTLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             LL + A+KV  IE D    PIL+    +H N   +I  DALKVDF +       ++++
Sbjct: 61  AQLL-MKAKKVTSIELDNDLIPILEQELGEHKN-FSLIHKDALKVDFNELIGDEKSVKLV 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   +        ++SLT++ QKEV ERI A+ N   YG LSVL  +  
Sbjct: 119 ANLPYYVTTPIIVKLLKGGYN---FKSLTIMIQKEVAERINAEPNCKEYGALSVLVQYYC 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQS 240
              ++  + P  F P PKV S VI       P      +  + +I +  F  RRKTL  +
Sbjct: 176 NTDIIRKVPPTCFIPRPKVESIVIRLDRLDEPRVKTKDINIMFEIVRAGFNMRRKTLWNA 235

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            K L       E    ++GI+   RAE L++E+F  +++ + D
Sbjct: 236 AKTLKVDKEKLEEAFKKSGIDPKRRAETLTLEEFAALSDCIYD 278


>gi|257471197|ref|ZP_05635196.1| dimethyladenosine transferase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
          Length = 308

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 144/282 (51%), Gaps = 26/282 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT N K H           +P K  GQNFL++ + +K I +        T++EIG G   
Sbjct: 36  MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119
           LT+ +  L   ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     I
Sbjct: 85  LTKPMCEL-LEELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141

Query: 120 RIIANLPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           RI  NLPYNI T L   LF  I         + +  + QKEV ER+ +   +  YGRLS+
Sbjct: 142 RIFGNLPYNISTSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSI 195

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234
           ++ +     ++ ++SP  F P PKV S  I+  PH N       +  L  IT++AF  RR
Sbjct: 196 ISQYYCDIKILLNVSPEDFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRR 255

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           K LR SLK L  E  L +  I +NLRAEN+S+  +C++ N L
Sbjct: 256 KILRHSLKNLFSEKELIKLEINSNLRAENVSVSQYCKLANYL 297


>gi|332994415|gb|AEF04470.1| dimethyladenosine transferase [Alteromonas sp. SN2]
          Length = 275

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 141/277 (50%), Gaps = 22/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT L H     +K  GQNFL D  ++ +I  +        ++EIG G G LT  +     
Sbjct: 3   KTHLGHTA---RKRFGQNFLHDDYVIGQIVSAINPQHEQNLVEIGPGLGALTDPVCD-EV 58

Query: 71  RKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNI----SSPIRIIA 123
             + VIE D+     L+    +HP   ++L +I+ DA+ +DF +           +R+  
Sbjct: 59  EALTVIELDRDLAKRLR----EHPFNGDKLTVIEQDAMTMDFTELAKTMPVKDKGLRVFG 114

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYNI T L+F+  S        + +  + QKEV  R+ A   S  YGRLSV+  +  K
Sbjct: 115 NLPYNISTPLMFHLFSHAAC---VDDMHFMLQKEVVNRLAAGHGSKSYGRLSVMAQYYCK 171

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQS 240
              + ++ P  F P PKV S V+  IPH  P P     + +L+++  +AF +RRKT+R S
Sbjct: 172 VMPVLNVPPGAFKPPPKVDSAVVRLIPHKTP-PVDVVSVATLERVCAQAFNQRRKTIRNS 230

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LK    E  + + GI   +RAE LS++DF  I N ++
Sbjct: 231 LKESLTETQISELGINPTVRAEVLSLQDFATIANAVS 267


>gi|293381472|ref|ZP_06627467.1| dimethyladenosine transferase [Lactobacillus crispatus 214-1]
 gi|290921942|gb|EFD98949.1| dimethyladenosine transferase [Lactobacillus crispatus 214-1]
          Length = 294

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 148/284 (52%), Gaps = 24/284 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D   +  I E++       VIEIG G G+LT+ LL  GA
Sbjct: 14  QAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAARIKKDDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFE----KFFNISSPIR 120
            KV   E D     IL     K I  Q   +R ++I  D LK DF+     FF+ + PI+
Sbjct: 74  -KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDVLKADFKVDISDFFDFTKPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ AQ  S  YG L++    
Sbjct: 133 VVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPGSKEYGPLTISVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237
                +   +S + F P PKV S+V+   P L   P  +E+ K    + +  F +RRKTL
Sbjct: 190 EMNVKLALQVSHNSFMPRPKVDSSVVVLTP-LKEKP-AIENRKHFIWVVKMCFSQRRKTL 247

Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +LK L       + L  + G+   +R E L+I+ F +I + +
Sbjct: 248 NNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291


>gi|160886818|ref|ZP_02067821.1| hypothetical protein BACOVA_04832 [Bacteroides ovatus ATCC 8483]
 gi|156107229|gb|EDO08974.1| hypothetical protein BACOVA_04832 [Bacteroides ovatus ATCC 8483]
          Length = 266

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 136/255 (53%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R + V+E D 
Sbjct: 6   PKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEVDY 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++      +   II+DD LK++  + F+  +P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GTPFVLTGNYPYNISSQIFFKMLDN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P PK
Sbjct: 122 KDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +      C E L K++ +  F +RRKTLR S+K + G++      I  N 
Sbjct: 179 VKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTENILFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+ +F  +TN
Sbjct: 239 RPEQLSVAEFIDLTN 253


>gi|331701953|ref|YP_004398912.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129296|gb|AEB73849.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
           buchneri NRRL B-30929]
          Length = 296

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ Y +  KK +GQNFL+DL +L  I  ++       VIEIG G G LT+ L    A
Sbjct: 14  QAILNRYHLSAKKSLGQNFLVDLGVLDNIVAAAKITKADNVIEIGPGIGGLTEQLAK-AA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
            KV+  E D    P+L +  + + N +EII  D LK +  K     F+   P++++ANLP
Sbjct: 73  NKVVAFEIDANLLPVLDETLAPYDN-IEIINQDILKANLPKIIDDVFDTEKPLKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ + I+ +T    ++++ ++ QKEV ER+ A+ ++  YG LSV+     +  +
Sbjct: 132 YYITTPIVMDLITGETQ---FDAIVVMMQKEVAERLNAEPSTKPYGSLSVIVQELNQVEI 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +    F P PKV S ++   P +     P   ++     +  F  +RKTL  +L+ +
Sbjct: 189 SFVVPKTAFIPQPKVDSAIVKLTPRVKRAVEPFDQKAFISFVRGCFMHQRKTLWNNLQGI 248

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITN 274
            G+          +L    I+  +R ENL+++ F  + N
Sbjct: 249 FGKTPEVKGNIKEVLASVNIDAGVRPENLTVDQFVTLAN 287


>gi|326915765|ref|XP_003204183.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
           [Meleagris gallopavo]
          Length = 350

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 141/291 (48%), Gaps = 27/291 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  I+  + +  +K + QNFLLDL +  KI   +G L    V E+G GPG +T+ +L  
Sbjct: 17  TVGEIIKLFSLRAQKELSQNFLLDLRLTDKIVRQAGKLKNAYVCEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119
           G ++++++EKD +F P L+ +S   P ++ I+  D L    E+ F         +    I
Sbjct: 77  GVQQLLLVEKDTRFIPGLQMLSEAAPGKVRIVHGDILTYKMERAFPNHLKKNWEDEPPNI 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+N+ T L+  W   +S    P  +    +TL FQKEV ER+TA        RL
Sbjct: 137 HIIGNLPFNVSTPLIIKWLENVSKRDGPFVYGRTQMTLTFQKEVAERLTANTGGKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S+++         F I    F P P V   V+HF P + P I    E ++K+ Q  F  R
Sbjct: 197 SIMSQHLCTVENCFVIPGQAFVPKPDVDVAVVHFTPLVQPKIQQPFELVEKVVQSVFQFR 256

Query: 234 RKTL----------RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           RK            R+ LK+   E L+  A ++  LR   L++  F  + N
Sbjct: 257 RKYCCRGVEILFPERERLKK--TEQLMMAADVDPTLRPVQLTMSHFRNLCN 305


>gi|219681516|ref|YP_002467901.1| dimethyladenosine transferase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219624359|gb|ACL30514.1| dimethyladenosine transferase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 273

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 144/282 (51%), Gaps = 26/282 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT N K H           +P K  GQNFL++ + +K I +        T++EIG G   
Sbjct: 1   MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 49

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119
           LT+ +  L   ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     I
Sbjct: 50  LTKPMCEL-LEELIVIEIDQDLLFLLKKRSFY--SKLIVFYQNALSFNFLNLFHKKKQLI 106

Query: 120 RIIANLPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           RI  NLPYNI T L   LF  I         + +  + QKEV ER+ +   +  YGRLS+
Sbjct: 107 RIFGNLPYNISTSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSI 160

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234
           ++ +     ++ ++SP  F P PKV S  I+  PH N       +  L  IT++AF  RR
Sbjct: 161 ISQYYCDIKILLNVSPEDFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRR 220

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           K LR SLK L  E  L +  I +NLRAEN+S+  +C++ N L
Sbjct: 221 KILRHSLKNLFSEKELIKLEINSNLRAENVSVSQYCKLANYL 262


>gi|254373987|ref|ZP_04989469.1| dimethyladenosine transferase [Francisella novicida GA99-3548]
 gi|151571707|gb|EDN37361.1| dimethyladenosine transferase [Francisella novicida GA99-3548]
          Length = 262

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/266 (36%), Positives = 139/266 (52%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL+  +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHNIVVEIGPGLGALTRYLLS-SSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           +E D      L   + Q      I   D LK D     N S+  I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F+P PKV S ++   P +   +       ++I +++F +RRKTL  +LK +  E  +  +
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKGILKERKIDPS 236

Query: 254 G--IETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|302024552|ref|ZP_07249763.1| dimethyladenosine transferase [Streptococcus suis 05HAS68]
 gi|330833629|ref|YP_004402454.1| dimethyladenosine transferase [Streptococcus suis ST3]
 gi|329307852|gb|AEB82268.1| dimethyladenosine transferase [Streptococcus suis ST3]
          Length = 290

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 147/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI  ++     + VIEIG G G LT+ L    A
Sbjct: 10  RAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D   +  N + ++  D LK D     + F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFSE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRRKTLWNNLTNH 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G++          L  A +E ++R E LS+ DF R+++ L +
Sbjct: 245 FGKSDEVKDKLTRALGMAELEASVRGEALSMADFARLSDSLQE 287


>gi|237714484|ref|ZP_04544965.1| dimethyladenosine transferase [Bacteroides sp. D1]
 gi|262408316|ref|ZP_06084863.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22]
 gi|293373592|ref|ZP_06619940.1| dimethyladenosine transferase [Bacteroides ovatus SD CMC 3f]
 gi|294646638|ref|ZP_06724267.1| dimethyladenosine transferase [Bacteroides ovatus SD CC 2a]
 gi|294805896|ref|ZP_06764766.1| dimethyladenosine transferase [Bacteroides xylanisolvens SD CC 1b]
 gi|299148382|ref|ZP_07041444.1| dimethyladenosine transferase [Bacteroides sp. 3_1_23]
 gi|229445648|gb|EEO51439.1| dimethyladenosine transferase [Bacteroides sp. D1]
 gi|262353868|gb|EEZ02961.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22]
 gi|292631417|gb|EFF50047.1| dimethyladenosine transferase [Bacteroides ovatus SD CMC 3f]
 gi|292638021|gb|EFF56410.1| dimethyladenosine transferase [Bacteroides ovatus SD CC 2a]
 gi|294446925|gb|EFG15522.1| dimethyladenosine transferase [Bacteroides xylanisolvens SD CC 1b]
 gi|295086621|emb|CBK68144.1| dimethyladenosine transferase [Bacteroides xylanisolvens XB1A]
 gi|298513143|gb|EFI37030.1| dimethyladenosine transferase [Bacteroides sp. 3_1_23]
          Length = 266

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 136/257 (52%), Gaps = 8/257 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P 
Sbjct: 120 DNKDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K++ +  F +RRKTLR S+K + G++      I  
Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILF 236

Query: 258 NLRAENLSIEDFCRITN 274
           N R E LS+ +F  +TN
Sbjct: 237 NKRPEQLSVAEFIDLTN 253


>gi|83588925|ref|YP_428934.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073]
 gi|119365033|sp|Q2RME8|RSMA_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83571839|gb|ABC18391.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073]
          Length = 288

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 144/275 (52%), Gaps = 24/275 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVI 76
           ++P+K  GQNFL+D NI++KIA ++    G TV+EIG G G LTQ    L AR   VI I
Sbjct: 19  LVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQ---ELAARAGLVIAI 75

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSPIRIIANLPYN 128
           E D++ F  L++  +   N + ++  DALKVDF++                +++ANLPY 
Sbjct: 76  EIDRELFAALEETLAGRDN-VRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVANLPYY 134

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L + +++         L L+ Q EVG R+ A+     YG LSV+  + T+  ++ 
Sbjct: 135 ITTPILMHLLTSRFR---IAELVLMVQAEVGYRMLARPGGKDYGALSVVVQYYTEPAVVL 191

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG 246
            +   VF+P P+V S V+       P+    +     ++ + AF +RRKT+  +L  LG 
Sbjct: 192 KVPRTVFYPRPEVDSLVLKLTCRTRPVVQVEDEDFFFRVVRAAFNQRRKTILNALGSLGF 251

Query: 247 E-----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E       L  AGI+   R E L +E+F  I+  L
Sbjct: 252 EKSKIMEALAGAGIDPRRRGETLGMEEFASISRTL 286


>gi|315127732|ref|YP_004069735.1| dimethyladenosine transferase [Pseudoalteromonas sp. SM9913]
 gi|315016246|gb|ADT69584.1| dimethyladenosine transferase [Pseudoalteromonas sp. SM9913]
          Length = 268

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/267 (35%), Positives = 138/267 (51%), Gaps = 19/267 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D +I+ KI  +        ++EIG G G +T+ +  L    + V+E D  
Sbjct: 12  RKRFGQNFLFDESIIDKIVTAIDPKPQDNLVEIGPGLGAITEPVADLSGH-LTVVELD-- 68

Query: 82  FFPILKDISS---QHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
                KD++    +HP    +L + Q DA+K DF         +++  NLPYNI T LLF
Sbjct: 69  -----KDLAQRLIEHPFLGPKLTVNQGDAMKFDFASLVKDDKKLKVFGNLPYNISTPLLF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E +  + QKEV +R+ A   S  +GRLSV+T +   A  + ++ P  F
Sbjct: 124 HLFE---FADHIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCHAMPVVEVPPECF 180

Query: 196 FPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S VI  IP          ++ L  +  EAF +RRKTLR SL  L   + L   
Sbjct: 181 KPAPKVDSAVIRLIPKKAQQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTADELTSI 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+  LRAE+LS++ F  I N + DN+
Sbjct: 241 GIDITLRAESLSLQQFIDIANWIYDNK 267


>gi|148264355|ref|YP_001231061.1| dimethyladenosine transferase [Geobacter uraniireducens Rf4]
 gi|146397855|gb|ABQ26488.1| dimethyladenosine transferase [Geobacter uraniireducens Rf4]
          Length = 275

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 144/267 (53%), Gaps = 16/267 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI  KK MGQNFL+D N+L +I ++        ++E+G G G LT +L+   A +V+ +E
Sbjct: 3   KIRAKKSMGQNFLVDRNVLTRIVDAVNISAEDRILEVGPGKGALTALLVERAA-QVLAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIGTRLLF 135
            D+Q  P L    +   N +E +Q D LKV+  +      S   ++ ANLPYNI +++LF
Sbjct: 62  LDRQLVPFLAREFAPQKN-VEFVQGDILKVNLSELLMDRWSGAWKVAANLPYNISSQVLF 120

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            ++     P  +  L L+ QKEVG+R+ A      YG LSV        + +  + P  F
Sbjct: 121 KFLDN---PKLFSLLILMLQKEVGDRLIAAPGCKDYGILSVFCRLHFDISRVLIVKPGSF 177

Query: 196 FPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLK--RLGGE---- 247
            P PKV S V+ F+P   P +    ES  +K+ + AF +RRKTL   LK   LG +    
Sbjct: 178 TPVPKVDSVVLKFVPLPAPRVDVEDESFFRKVVKAAFSQRRKTLWNCLKSSELGVDGDVL 237

Query: 248 -NLLHQAGIETNLRAENLSIEDFCRIT 273
            +LL + GI+ + R E LS+++F  +T
Sbjct: 238 LSLLTKCGIDGSRRGETLSLDEFAVLT 264


>gi|170575593|ref|XP_001893303.1| ribosomal RNA adenine dimethylase family protein [Brugia malayi]
 gi|158600773|gb|EDP37864.1| ribosomal RNA adenine dimethylase family protein [Brugia malayi]
          Length = 364

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 152/297 (51%), Gaps = 26/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           SLK+ L  Y++  KK + QN+L+D+N+ +KI   +    G  V+EIG GPG++T+ +L +
Sbjct: 13  SLKSFLYAYQLQAKKILSQNYLMDMNLTRKIVRQAEMKKGDYVVEIGPGPGSITRAILEM 72

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR-------- 120
             R++ VIE D +F P L+ +      R+ I + D LK + E+ ++ +   R        
Sbjct: 73  DCRRLDVIEIDHRFVPPLEVLKEASEERMFIHRADILKTNIEQIWSQAGLERVAWEEDRL 132

Query: 121 ----IIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
               II NLP+NI + L+  ++         W      L L FQ EV ER+ +  +SP  
Sbjct: 133 PTAHIIGNLPFNIASPLIIKFLREMLYRQGPWSFGRVPLLLTFQMEVAERLCSPIDSPFR 192

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            R+S+++ + T+  ++F I    F PSPKV   V+ F+P  +P I    E ++K+ +  F
Sbjct: 193 ARISIMSAFVTEPKLLFQIPGRCFVPSPKVNVGVVRFVPRQDPLIKTSFEVVEKVCRRIF 252

Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             R+K + + ++ L          ++LL +  I+    A  L +E F  I  +  ++
Sbjct: 253 NYRQKYVIKGVRTLYPKELAKHLADDLLKRCRIDPTTTAICLGVEQFADICYVYEEH 309


>gi|21909726|ref|NP_663994.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS315]
 gi|28895107|ref|NP_801457.1| dimethyladenosine transferase [Streptococcus pyogenes SSI-1]
 gi|27151566|sp|Q8K8N6|RSMA_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21903910|gb|AAM78797.1| putative dimethyladenosine transferase [Streptococcus pyogenes
           MGAS315]
 gi|28810352|dbj|BAC63290.1| putative dimethyladenosine transferase [Streptococcus pyogenes
           SSI-1]
          Length = 290

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 149/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMMRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I++++R E LSI+DF ++ + L +
Sbjct: 245 FGKSEDIKAKLEKGLALADIKSSIRGEALSIQDFGKLADALKE 287


>gi|317499422|ref|ZP_07957689.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893294|gb|EFV15509.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 285

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 154/289 (53%), Gaps = 19/289 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N  ++++ ++  Y    +K  GQNFL+D  +L+KI  ++       V+EIG G G 
Sbjct: 1   MKLGNPKNTIE-VIQKYDFDFQKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           +TQ L    AR+V+ +E D+   PIL D  S + N + I+  D LKVD  K     N   
Sbjct: 60  MTQYLAE-NAREVMAVEIDKNLIPILSDTLSAYDN-VSILNADILKVDIAKIVEEKNGGK 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P++++ANLPY I T ++     +       +S+T++ QKEV +R+ +   +  YG LS+ 
Sbjct: 118 PVKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQSGPGTKDYGALSLA 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLK-KITQEAFGKRRK 235
             +  +  ++ ++ P+ F P PKV S VI    + +  I    E L  ++ + +F +RRK
Sbjct: 175 VQYYAEPYVVANVPPNCFMPRPKVGSAVIRLTKYKDALIKVTNEKLLFQLIRASFNQRRK 234

Query: 236 TLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
           TL+  +K  GG N         L +  +  ++R E L++E F +++NIL
Sbjct: 235 TLQNGIKNFGGLNFSKEQVAQALEEMELPASVRGEALTLEQFAQLSNIL 283


>gi|238917939|ref|YP_002931456.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750]
 gi|238873299|gb|ACR73009.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750]
          Length = 293

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 154/289 (53%), Gaps = 19/289 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N ++++  +L+ Y    KK  GQNFL+D N+++KI   +G      V+E+G G G 
Sbjct: 10  MHLGNPTNTI-AVLNRYGFDFKKKFGQNFLIDENVVEKIVREAGVTKDDFVVEVGPGIGT 68

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           +TQ+L    AR+V+ +E D++  PIL + +  + + + +I +D LK+D +K     N   
Sbjct: 69  MTQILCE-NAREVVAVEIDKKLIPILTEDTLSYYDNVTVINEDILKLDIKKLADEKNEGR 127

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T ++     +       +S+T++ QKEV +R+     +  YG LS+ 
Sbjct: 128 PIKVVANLPYYITTPIIMGLFESHVP---LDSITIMVQKEVADRMQCGPGTKDYGALSLA 184

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRR 234
             +  K  ++ ++    F P P V S VI       P P  +++   + KI + +F +RR
Sbjct: 185 VQFYAKPKVVLNVPASCFMPRPNVDSAVIRLERFKTP-PVDVKNEHLMFKIIRASFNQRR 243

Query: 235 KTLRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           KT+  S+   G         N L   G+   +R E L++E F +++N+L
Sbjct: 244 KTMLNSVGNSGIGITKEALTNALETMGLPLTIRGEALTLEQFAQLSNLL 292


>gi|325569335|ref|ZP_08145491.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325157335|gb|EGC69496.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 295

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 150/280 (53%), Gaps = 21/280 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL+ +    KK +GQNFL + NIL+KI E++G  +   VIE+G G G LT+ L    A
Sbjct: 14  KEILAKHGFTFKKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQLAK-QA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
           ++V+  E D +  P+L D    + N ++II  D L+ D       +F + ++ ++++ANL
Sbjct: 73  KQVLAFEIDDRLIPVLADTMQPYAN-VKIIHQDVLQADLSTTIRSEFSDTAASLKVVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T ++ +++ +    P  E + ++ QKEV +RI+A   +  YG LS+   +  +A 
Sbjct: 132 PYYITTPIMMHFLESQV--PVDE-MVVMMQKEVADRISAVPGTKAYGSLSIAVQYYMEAK 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243
           + F +   VF P P V S ++       P     +  +  K+T+ AF  RRKTL  +L+ 
Sbjct: 189 LAFIVPKTVFVPQPNVDSAILKLTRRPQPAVAVTDEKEFFKLTKAAFQLRRKTLWNNLQN 248

Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
             G+         + L  +GI+   R E LS+ +F +++N
Sbjct: 249 SYGKDEETKQWLADSLEASGIDPKRRGETLSLAEFAKLSN 288


>gi|222056012|ref|YP_002538374.1| dimethyladenosine transferase [Geobacter sp. FRC-32]
 gi|221565301|gb|ACM21273.1| dimethyladenosine transferase [Geobacter sp. FRC-32]
          Length = 275

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 146/266 (54%), Gaps = 15/266 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI  KK MGQNFL+D N+L +I E+        V+EIG G G LT +L+   A +V+ +E
Sbjct: 3   KIRAKKSMGQNFLVDGNVLSRIVEAVVLEPSDRVLEIGPGRGALTSLLVK-RAEQVLAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLF 135
            D+Q  P+L+   S   N +E IQ D LK++  +      +   ++ ANLPYNI ++++F
Sbjct: 62  LDRQLVPLLEKEFSGADN-VEFIQGDILKIELPEVLGSRWNGRWKVAANLPYNISSQVIF 120

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            ++   +    + SL L+ QKEVG+R+ A   +  YG LSV        + +  + P  F
Sbjct: 121 KFLDNVS---LFSSLILMLQKEVGDRLIASPGTKEYGILSVFCNLHFNISRVLIVKPGSF 177

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR-LGGEN---- 248
            P PKV S V+ F+P   P     +    +++ + +F +RRKTL   L+  L  +N    
Sbjct: 178 RPIPKVDSVVLKFVPLAAPRQDVGDETLFRQVVKASFSQRRKTLANCLRSALIADNDDLN 237

Query: 249 -LLHQAGIETNLRAENLSIEDFCRIT 273
            +L QAGI+   R E L++E++ ++T
Sbjct: 238 LILSQAGIDGGRRGETLTLEEYAQLT 263


>gi|332828677|gb|EGK01369.1| ribosomal RNA small subunit methyltransferase A [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 266

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 140/259 (54%), Gaps = 13/259 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL DL+I ++IA++      + VIE+G G G LTQ L+    R++ V+E D+ 
Sbjct: 7   KKFLGQHFLKDLDIARRIADTLDDFPDVPVIEVGPGMGVLTQFLIE-KKRELTVVELDRD 65

Query: 82  FFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             P L    ++H   L+  II+DD LK+D  K ++  +   +I N PYNI +++ F  + 
Sbjct: 66  SVPYL----NEHYPALQGHIIEDDFLKLDLLKIYD--NQFCVIGNYPYNISSQIFFKVLD 119

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     + + QKEV ERI A+     YG LSVL         +F +S  VF P P
Sbjct: 120 YKNHIP---CCSGMLQKEVAERIAAKPGGKTYGILSVLLQAWYDIEYLFTVSEKVFDPPP 176

Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S V+  + +      C E L K + +  F +RRKTLR S+K L G++         N
Sbjct: 177 KVKSAVVKLVRNKRQSLDCDEKLFKTVVKTGFNQRRKTLRNSMKPLLGKDCDAYTDPIFN 236

Query: 259 LRAENLSIEDFCRITNILT 277
            R E LS+ DF ++TNI+ 
Sbjct: 237 ERPERLSVADFEKLTNIVA 255


>gi|126701147|ref|YP_001090044.1| dimethyladenosine transferase [Clostridium difficile 630]
 gi|254977148|ref|ZP_05273620.1| dimethyladenosine transferase [Clostridium difficile QCD-66c26]
 gi|255094477|ref|ZP_05323955.1| dimethyladenosine transferase [Clostridium difficile CIP 107932]
 gi|255316228|ref|ZP_05357811.1| dimethyladenosine transferase [Clostridium difficile QCD-76w55]
 gi|255518890|ref|ZP_05386566.1| dimethyladenosine transferase [Clostridium difficile QCD-97b34]
 gi|255652069|ref|ZP_05398971.1| dimethyladenosine transferase [Clostridium difficile QCD-37x79]
 gi|260685043|ref|YP_003216328.1| dimethyladenosine transferase [Clostridium difficile CD196]
 gi|260688701|ref|YP_003219835.1| dimethyladenosine transferase [Clostridium difficile R20291]
 gi|306521805|ref|ZP_07408152.1| dimethyladenosine transferase [Clostridium difficile QCD-32g58]
 gi|118600854|sp|Q181C1|RSMA_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115252584|emb|CAJ70427.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) [Clostridium
           difficile]
 gi|260211206|emb|CBA66699.1| dimethyladenosine transferase [Clostridium difficile CD196]
 gi|260214718|emb|CBE07385.1| dimethyladenosine transferase [Clostridium difficile R20291]
          Length = 289

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           ++ K ++  Y     K +GQNFL+D NI+ KI   +    G  +IE+G G G LT+ +  
Sbjct: 8   NATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMGK 67

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIAN 124
           + A KV+ IE D+   PILKD  S   N  E++  D LKVD ++         P++++AN
Sbjct: 68  I-AEKVVAIEIDRNLIPILKDTLSDLDN-TEVVNQDILKVDIQELVKDKLNGGPVKLVAN 125

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T ++  ++  D   P  + + ++ QKEV +R+ A   +  YG LS+   +    
Sbjct: 126 LPYYITTPIVMKFLEEDI--PVTD-IVVMVQKEVADRMNAIPGTKDYGALSIAVQYYCDT 182

Query: 185 TMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            ++     H+F P P V STVI  H            +   K  + +FG+RRKTL  SL 
Sbjct: 183 EIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEDIFFKTVKASFGQRRKTLLNSLG 242

Query: 243 RLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            LG  N      +L +A I+   R E LSIE+F  ++NI+
Sbjct: 243 GLGFLNKDEIREILKEANIDEKRRGETLSIEEFSVLSNII 282


>gi|257868862|ref|ZP_05648515.1| dimethyladenosine transferase [Enterococcus gallinarum EG2]
 gi|257803026|gb|EEV31848.1| dimethyladenosine transferase [Enterococcus gallinarum EG2]
          Length = 300

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL+ +    KK +GQNFL + NIL+KI  ++   D   VIE+G G G LT+ L    A
Sbjct: 14  KEILAKHGFTFKKSLGQNFLTEPNILRKIVATAAIDDQTNVIEVGPGIGALTEQLAK-HA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           R+V+  E D +  P+L+D  + + N +++I  D L+ D      + F    PI+++ANLP
Sbjct: 73  RQVLAFEIDDRLIPVLQDTLAPYSN-IQVIHQDVLQADLSTMIREAFTDERPIKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ +++  ++  P  E + ++ QKEV +RI+A   +  YG LS+   +  +A +
Sbjct: 132 YYITTPIMMHFL--ESQAPIQE-MVVMMQKEVADRISAVPGTKAYGSLSIAVQYYMEAEL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S ++       P     +  +  K+T+ AF  RRKTL  +L+  
Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRATPAVEVTDEKEFFKLTKAAFQLRRKTLWNNLQNS 248

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITN 274
            G++          L  + I+   R E LS+ +F R++N
Sbjct: 249 YGKDEKTKEWLKASLAASEIDPTRRGETLSLAEFARLSN 287


>gi|325981519|ref|YP_004293921.1| dimethyladenosine transferase [Nitrosomonas sp. AL212]
 gi|325531038|gb|ADZ25759.1| dimethyladenosine transferase [Nitrosomonas sp. AL212]
          Length = 254

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 133/261 (50%), Gaps = 15/261 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQNFL D  I+ KI           +IEIG G G LT+ LL      + V+E D+
Sbjct: 5   PRKRFGQNFLFDQYIINKIITEFYPRKDDRIIEIGPGLGALTRPLLQ-AIDHLHVVEIDR 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                LK I   H N L I   DAL+ DF    N    +RII NLPYNI T LLF+    
Sbjct: 64  DIVDKLK-IEFSHEN-LTIHAADALQFDFSALGN---QMRIIGNLPYNISTPLLFHL--- 115

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             +      +  + QKEV ER+     +  YGRLSV+  +R     +FD+    F P PK
Sbjct: 116 SQFSEHILDMHFMLQKEVVERMVGVPGTSDYGRLSVMLQYRFDMEYVFDVPAESFRPQPK 175

Query: 201 VTSTVIHFIPHLNPIPCCL---ESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           V S ++  IP   PIP  +   E+L  +I   AF +RRKTLR +L++           I+
Sbjct: 176 VESAIVRMIP--RPIPLSMTVDETLFSQIVLAAFSQRRKTLRNALQQYLTVEDFSALNID 233

Query: 257 TNLRAENLSIEDFCRITNILT 277
           + LRAENL +E F  IT+ LT
Sbjct: 234 SGLRAENLPVEKFVAITHFLT 254


>gi|313889811|ref|ZP_07823453.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121856|gb|EFR44953.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 290

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/281 (33%), Positives = 144/281 (51%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGALTEFLAEQAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
            +V+  E D +  PIL +      N + +I  D LK D +     F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDDRLLPILAETLRDFDN-IRVINQDILKADLQTQIQGFKNPELPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAKPNTKAYGSLSIAVQYYMAAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++     + P+    +     ++ +  F  RRKTL  +L   
Sbjct: 185 SFIVPRTVFVPAPNVDSAILKMERRVEPLIKVQDEDFFFRVAKVGFIHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         E  L  AGI+ N+R E L+IE+F ++ + L
Sbjct: 245 FGKSEETKKKLEEALELAGIKANIRGEALTIEEFGKLADAL 285


>gi|71891913|ref|YP_277643.1| dimethyladenosine transferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|122064283|sp|Q493R7|RSMA_BLOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71796019|gb|AAZ40770.1| dimethyladenosine transferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 267

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 143/276 (51%), Gaps = 17/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K I     +I KK+  Q FL D N++  I ++        ++EIG G G LT+ +L + 
Sbjct: 1   MKKIYYKNHLIKKKW-SQVFLKDQNVIDTIVKTINPKKHQKILEIGPGLGALTKQILNIA 59

Query: 70  -ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIAN 124
               +I+IE+D      L  + ++   ++ I+  D +  +F   F++S  +    R+I N
Sbjct: 60  DLDSLILIERDSNLVNRLVQMFNK---KINILHQDIMTTNF---FDLSHKVGQKLRLIGN 113

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI T L+   +    +      +  +FQKEV  R+ A  N   YGRLS++T +  K 
Sbjct: 114 LPYNIATELI---VYLFQYTNVIYDMHFMFQKEVATRLYANPNKKEYGRLSIITQYHCKV 170

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLK 242
             +  I    FFP PKV S V+  +PH N P P   +  L  +T+ AF +RRKTLR SL 
Sbjct: 171 VPLLTIPATSFFPIPKVESMVMRLLPHTNTPYPIVNIGKLSSLTKLAFRQRRKTLRNSLS 230

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               E  + Q GI   LRAEN++I  +C + N+L +
Sbjct: 231 TFFNETEITQKGINPALRAENITINQYCTLANMLNN 266


>gi|319891446|ref|YP_004148321.1| Dimethyladenosine transferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161142|gb|ADV04685.1| Dimethyladenosine transferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323465384|gb|ADX77537.1| dimethyladenosine transferase [Staphylococcus pseudintermedius
           ED99]
          Length = 296

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 152/278 (54%), Gaps = 22/278 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69
           + +L+ Y    KK +GQNFL+D+NI+ +I ++SG +D +T VIEIG G G+LT+ L    
Sbjct: 13  RALLNQYGFNFKKSLGQNFLIDVNIINRIIDASG-IDHMTGVIEIGPGMGSLTEQLAK-N 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A+ V+  E DQ+  P+L D  S + N + +I +D LK +     ++  +    I ++ANL
Sbjct: 71  AQHVLAFEIDQRLIPVLDDTLSPY-NNVTVINEDILKANVAEAIQQHLSHCEKIMVVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L   +  D      +   ++ QKEVGER+ AQ  +  YG LS++  + T+ +
Sbjct: 130 PYYITTPILLTLLEQDLN---IDGYVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYTETS 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243
            +  +   VF P P V S V+  +   +PI       +  K+T+ AF +RRKT+  + + 
Sbjct: 187 RVLTVPKTVFMPPPNVDSIVVKLMKRESPIVDVDNPNAFFKMTKGAFSQRRKTIYNNYQN 246

Query: 244 L---GGE------NLLHQAGIETNLRAENLSIEDFCRI 272
           L   G E        L +A I+   R E LSI+++ R+
Sbjct: 247 LFENGKEQKETIMQWLERADIDPKRRGETLSIQEYARL 284


>gi|239628929|ref|ZP_04671960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519075|gb|EEQ58941.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 288

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 149/291 (51%), Gaps = 21/291 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N  H+++ I+  Y+   +K  GQNFL+D ++L KI  ++G      V+EIG G G +T
Sbjct: 4   LGNPKHTIE-IIQKYQFAFQKKFGQNFLIDTHVLDKIISAAGITKEDCVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L     R V+ +E D    PIL +    + N + +I +D LK+D  K    +N   PI
Sbjct: 63  QYLAEHAGR-VVAVEIDTNLLPILDETLKGYDN-VTVINNDILKLDINKLVDEYNGGRPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++      D      +++T++ QKEV +R+     S  YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFEGDVP---IDNVTVMVQKEVADRMQVGPGSKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKT 236
           +  +  ++ ++ P+ F P P V S VI    +  P P  +E  K   K+ + +F +RRKT
Sbjct: 178 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRYKEP-PVKVEDPKLMFKLVRASFNQRRKT 236

Query: 237 LRQSLKRLGGENLLHQAGIET--------NLRAENLSIEDFCRITNILTDN 279
           L+  L          +  +E         ++R E L++E F R++N  T+N
Sbjct: 237 LQNGLNNSPDIPYTKEQIVEAIESLQVSPSVRGEALTLEQFARLSNYFTEN 287


>gi|302390854|ref|YP_003826674.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501]
 gi|302202931|gb|ADL11609.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501]
          Length = 290

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 149/281 (53%), Gaps = 18/281 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL    I  KK +GQNFL+D NI+ KI  S+       VIEIG G G+LTQ L   GA
Sbjct: 12  REILEENGIQLKKSLGQNFLVDRNIIDKIIVSADLTSYDHVIEIGPGIGSLTQRLAE-GA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYN 128
           + V  IE D++F  IL++  S + N +  IQ DAL+ DFE+     S   I+++ANLPY 
Sbjct: 71  KAVWAIELDERFIKILEENLSNY-NNVNFIQADALEYDFEQLLTKLSGESIKVVANLPYY 129

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKATMM 187
           I T ++   +      PF E + ++ QKEV ERI A  ++   YG LS+   + ++  + 
Sbjct: 130 ITTPIIMRLLEEKL--PF-ERVVVMVQKEVAERIVATPEDGKKYGSLSLAVRYYSQPEIT 186

Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLG 245
             +   VF P PKV S ++   I    P+    E L  K+ Q AF +RRKT+R SL +  
Sbjct: 187 GTVPRTVFMPQPKVDSAIVKMEIRDKPPVEVKDEELLFKVIQAAFQQRRKTIRNSLSKAA 246

Query: 246 GENL--------LHQAGIETNLRAENLSIEDFCRITNILTD 278
             +L        L +  IE+  R E L +E F  ++N + D
Sbjct: 247 NLDLKRDLVDQALDKVDIESRRRGEKLDLERFTALSNSIFD 287


>gi|298480326|ref|ZP_06998524.1| dimethyladenosine transferase [Bacteroides sp. D22]
 gi|298273607|gb|EFI15170.1| dimethyladenosine transferase [Bacteroides sp. D22]
          Length = 266

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 135/255 (52%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R + V+E D 
Sbjct: 6   PKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEVDY 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKMLDN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P PK
Sbjct: 122 KDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +      C E L K++ +  F +RRKTLR S+K + G++      I  N 
Sbjct: 179 VKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTENILFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+ +F  +TN
Sbjct: 239 RPEQLSVAEFIDLTN 253


>gi|138893714|ref|YP_001124167.1| dimethyladenosine transferase [Geobacillus thermodenitrificans
           NG80-2]
 gi|166221668|sp|A4IJB8|RSMA_GEOTN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|134265227|gb|ABO65422.1| Dimethyladenosine transferase [Geobacillus thermodenitrificans
           NG80-2]
          Length = 293

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 24/283 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL+ Y    KK +GQNFL+D NIL+KI +++G       IEIG G G LT+  L   A
Sbjct: 12  KEILARYGFSFKKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQ-LARRA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
           +KV+  E D +  PIL D  S + N + II  D LK D      E+F  +S  + ++ANL
Sbjct: 71  KKVVAFEIDSRLLPILADTLSAYDN-VRIIHQDVLKADLHAVIAEEFAEVSDRM-VVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++ +  P     + ++ QKEV +R+ A+  +  YG L++   + T+A 
Sbjct: 129 PYYVTTPIIMKLLT-ERLP--IRGMVVMMQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL- 241
           ++  +   VF P P V S VI      +P P  +E  +   ++ + +F +RRKTL  +L 
Sbjct: 186 VVMTVPRTVFMPQPNVDSAVIRLTKRSHP-PVAVEDEEVFFQVVRASFAQRRKTLLNNLL 244

Query: 242 --------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   K+   E  L   GI+   R E L + +F  ++N L
Sbjct: 245 NNLPDGKEKKEQIERALDAVGIDPRRRGETLDMAEFASLSNAL 287


>gi|238795194|ref|ZP_04638781.1| Dimethyladenosine transferase [Yersinia intermedia ATCC 29909]
 gi|238725481|gb|EEQ17048.1| Dimethyladenosine transferase [Yersinia intermedia ATCC 29909]
          Length = 232

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/235 (37%), Positives = 132/235 (56%), Gaps = 18/235 (7%)

Query: 51  VIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDAL 105
           ++EIG G G LT+    + AR   + VIE D+     L    + HP   ++L I Q DA+
Sbjct: 1   MVEIGPGLGALTE---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAM 53

Query: 106 KVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           KV+F +   ++  P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A
Sbjct: 54  KVNFSELAELAGQPLRVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVA 110

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESL 222
             NS  YGRL+V+  +      + ++ P  F P+PKV S V+  IPH+N P P   +  L
Sbjct: 111 GPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRML 170

Query: 223 KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            ++T +AF +RRKT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 171 SRVTTQAFNQRRKTVRNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 225


>gi|255102733|ref|ZP_05331710.1| dimethyladenosine transferase [Clostridium difficile QCD-63q42]
 gi|255308554|ref|ZP_05352725.1| dimethyladenosine transferase [Clostridium difficile ATCC 43255]
          Length = 289

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           ++ K ++  Y     K +GQNFL+D NI+ KI   +    G  +IE+G G G LT+ +  
Sbjct: 8   NATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMGK 67

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIAN 124
           + A KV+ IE D+   PILKD  S   N  E++  D LKVD ++         P++++AN
Sbjct: 68  I-AEKVVAIEIDRNLIPILKDTLSDLDN-TEVVNQDILKVDIQELVKDKLNGGPVKLVAN 125

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T ++  ++  D   P  + + ++ QKEV +R+ A   +  YG LS+   +    
Sbjct: 126 LPYYITTPIVMKFLEEDI--PVTD-IVVMVQKEVADRMNAIPGTKDYGALSIAVQYYCDT 182

Query: 185 TMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            ++     H+F P P V STVI  H            +   K  + +FG+RRKTL  SL 
Sbjct: 183 EIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEDIFFKTVKASFGQRRKTLLNSLG 242

Query: 243 RLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            LG  N      +L +A I+   R E LSIE+F  ++NI+
Sbjct: 243 GLGFLNKDEIREVLKEANIDEKRRGETLSIEEFSVLSNII 282


>gi|15616761|ref|NP_239973.1| dimethyladenosine transferase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386908|sp|P57241|RSMA_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|25286065|pir||C84946 dimethyladenosine transferase [imported] - Buchnera sp.  (strain
           APS)
 gi|10038824|dbj|BAB12859.1| dimethyladenosine transferase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 273

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/265 (36%), Positives = 140/265 (52%), Gaps = 15/265 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P K  GQNFL++ + +K I +        T++EIG G   LT+ +  L   ++IVIE
Sbjct: 7   KHLPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAALTKPMCEL-LEELIVIE 65

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRL--- 133
            DQ    +LK  S    ++L +   +AL  +F   F+     IRI  NLPYNI T L   
Sbjct: 66  IDQDLLFLLKKRSFY--SKLIVFYQNALNFNFLNLFHKKKQLIRIFGNLPYNISTSLIIF 123

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF  I         + +  + QKEV ER+ +   +  YGRLS+++ +     ++ ++SP 
Sbjct: 124 LFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSIISQYYCDIKILLNVSPE 177

Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P PKV S  I+  PH N       +  L  IT++AF  RRK LR SLK L  E  L 
Sbjct: 178 DFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKILRHSLKNLFSEKELI 237

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
           +  I +NLRAEN+S+  +C++ N L
Sbjct: 238 KLEINSNLRAENVSVSHYCKLANYL 262


>gi|260171826|ref|ZP_05758238.1| dimethyladenosine transferase [Bacteroides sp. D2]
 gi|315920138|ref|ZP_07916378.1| dimethyladenosine transferase [Bacteroides sp. D2]
 gi|313694013|gb|EFS30848.1| dimethyladenosine transferase [Bacteroides sp. D2]
          Length = 266

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 135/255 (52%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R + V+E D 
Sbjct: 6   PKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEVDY 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKMLDN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P PK
Sbjct: 122 KDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +      C E L K++ +  F +RRKTLR S+K + G++      I  N 
Sbjct: 179 VKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+ +F  +TN
Sbjct: 239 RPEQLSVAEFIDLTN 253


>gi|55980052|ref|YP_143349.1| dimethyladenosine transferase [Thermus thermophilus HB8]
 gi|62900482|sp|Q5SM60|RSMA_THET8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226192685|pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
           (Ksga) In Complex With Adenosine In Space Group P212121
 gi|226192686|pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
           Methyltransferase (Ksga) In Space Group P43212
 gi|226192687|pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
           Methyltransferase (Ksga) In Space Group P43212
 gi|226192688|pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
           Methyltransferase (Ksga) In Space Group P43212
 gi|226192689|pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
           (Ksga) In Complex With 5'-Methylthioadenosine In Space
           Group P212121
 gi|226192690|pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
           (Ksga) In Complex With 5'-Methylthioadenosine In Space
           Group P212121
 gi|226192691|pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
           (Ksga) In Complex With 5'-Methylthioadenosine In Space
           Group P212121
 gi|226192692|pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
           (Ksga) In Complex With 5'-Methylthioadenosine In Space
           Group P212121
 gi|55771465|dbj|BAD69906.1| dimethyladenosine transferase [Thermus thermophilus HB8]
          Length = 271

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 144/283 (50%), Gaps = 23/283 (8%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+      S++ +L  + +   K  GQNFL+    L++I E++    G  V E+G G G 
Sbjct: 1   MSKLASPQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA +V  IEKD +  P+L++  S  P RL  +  DAL   +E+    S    
Sbjct: 60  LTRALLEAGA-EVTAIEKDLRLRPVLEETLSGLPVRL--VFQDALLYPWEEVPQGSL--- 113

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY+I T L+   +    +      L  L QKEV ER+TA+  +P YG L++    
Sbjct: 114 LVANLPYHIATPLVTRLLKTGRF----ARLVFLVQKEVAERMTARPKTPAYGVLTLRVAH 169

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLR 238
              A  +FD+ P  FFP PKV S+++   P        L+   L ++ + AFGKRRKTL 
Sbjct: 170 HAVAERLFDLPPGAFFPPPKVWSSLVRLTPT-----GALDDPGLFRLVEAAFGKRRKTLL 224

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            +L   G      E  L   G+   +RAE L +E F R+   L
Sbjct: 225 NALAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGL 267


>gi|308179573|ref|YP_003923701.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045064|gb|ADN97607.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 296

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y +  KK +GQNFL D N+L  I  ++       VIEIG G G LT+ L    A
Sbjct: 15  RAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYL-ARAA 73

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
             V+  E D +  PIL +  + + N + ++  D LK D      +  +   P++++ANLP
Sbjct: 74  HHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNERPLKLVANLP 132

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N ++ D     +E++ ++ QKEV +R+ A+  +  YG L++   +R  A M
Sbjct: 133 YYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTIAVQYRMAAEM 189

Query: 187 MFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
              +   VF PSP V S ++    +P    +P    +  K+ +  F  RRK L  +L+ L
Sbjct: 190 AMVVPRTVFVPSPNVDSAIVKLTALPPRTHVPFDEAAFFKVVKAGFAHRRKNLWNNLQSL 249

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         +  L  A I+  +RAE L++++F  +T+ L
Sbjct: 250 FGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290


>gi|269960921|ref|ZP_06175291.1| dimethyladenosine transferase [Vibrio harveyi 1DA3]
 gi|269834361|gb|EEZ88450.1| dimethyladenosine transferase [Vibrio harveyi 1DA3]
          Length = 269

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 138/263 (52%), Gaps = 13/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P P   L  L+++ +E F +RRKT+R   K L    +L + GI 
Sbjct: 184 PKVDSAVVRLVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKSLLSTEVLEELGIN 243

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            ++R ENL+++ F  + N L DN
Sbjct: 244 PSMRPENLTLQQFVAMANWLADN 266


>gi|302871038|ref|YP_003839674.1| dimethyladenosine transferase [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302573897|gb|ADL41688.1| dimethyladenosine transferase [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 282

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 151/270 (55%), Gaps = 13/270 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L  +L  Y++ P K +GQNFL+D N+++KI   S + +G  VIEIGAGPG LT + L  
Sbjct: 9   ELLNLLKKYELSPNKKLGQNFLIDENVVRKIILFSQT-EGKEVIEIGAGPGTLT-IYLAK 66

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A+KV  +E D++   +LK++  Q+ + ++I+  D L+++  K     + I ++ NLPY 
Sbjct: 67  TAQKVFAVEIDKKILNVLKEVC-QNLSNVQIVNSDFLELNV-KNLTKGNKIYVVGNLPYY 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + +++LF            E  T++ QKEV +R+ A+  +  YG L+V   +  +    F
Sbjct: 125 VTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAEPGTKEYGNLTVAMNFYCEIEDYF 181

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------K 242
            +S +VF+P P+V STV+     +       +   KI    F  RRKT+  +L      +
Sbjct: 182 YVSKNVFYPKPEVDSTVLRARFKIEKPNIDEKKFFKIVHACFSTRRKTILNALSNHFDIE 241

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRI 272
           +   + +++ A ++ NLRAE+LS++D+ R+
Sbjct: 242 KDKLKRIINMAEVDENLRAEDLSLDDYIRL 271


>gi|190572863|ref|YP_001970708.1| dimethyladenosine transferase [Stenotrophomonas maltophilia K279a]
 gi|190010785|emb|CAQ44394.1| putative dimethyladenosine transferase [Stenotrophomonas
           maltophilia K279a]
          Length = 267

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 133/256 (51%), Gaps = 10/256 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL D + + KI  +    DG  ++EIG G G +T  LL +   K+ VIE D+ 
Sbjct: 17  KKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +++    L I+  D L+VDF +      PIR++ NLPYNI + +LF+ +   
Sbjct: 76  LIAPLT-AAAEPLGELTIVHRDVLRVDFTEL-AAGQPIRLVGNLPYNISSPILFHALEHA 133

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                   +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PKV
Sbjct: 134 A---VIRDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCQVTSLFVVPPGAFRPPPKV 190

Query: 202 TSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            S V+  +P  +P    +   K+   + + AFG+RRKTLR +L  +        AG+  +
Sbjct: 191 DSAVVRLVPR-DPATISISDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFVAAGVRPD 249

Query: 259 LRAENLSIEDFCRITN 274
            RAE L + +F  + N
Sbjct: 250 ARAEQLDVAEFIALAN 265


>gi|19745394|ref|NP_606530.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS8232]
 gi|209558786|ref|YP_002285258.1| dimethyladenosine transferase [Streptococcus pyogenes NZ131]
 gi|306828033|ref|ZP_07461298.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782]
 gi|27151569|sp|Q8P2N8|RSMA_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|19747502|gb|AAL97029.1| putative dimethyladenosine transferase [Streptococcus pyogenes
           MGAS8232]
 gi|209539987|gb|ACI60563.1| Dimethyladenosine transferase [Streptococcus pyogenes NZ131]
 gi|304429749|gb|EFM32793.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782]
          Length = 290

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 245 FGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287


>gi|323128061|gb|ADX25358.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 290

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQIQIKQFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 245 FGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287


>gi|126662912|ref|ZP_01733911.1| dimethyladenosine transferase [Flavobacteria bacterium BAL38]
 gi|126626291|gb|EAZ96980.1| dimethyladenosine transferase [Flavobacteria bacterium BAL38]
          Length = 268

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 143/265 (53%), Gaps = 17/265 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVI 76
           K+  KK++GQ+FL D +I K IA++  SL+G   ++EIG G G LT+ LL     +  VI
Sbjct: 12  KVTAKKHLGQHFLKDESIAKDIADTL-SLEGYDKILEIGPGMGVLTKYLLD-KPTETFVI 69

Query: 77  EKDQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           E D++    L      H  +LE  II  D LK D  + FN   P  II N PYNI T+++
Sbjct: 70  EIDKESVEYL----GVHYPKLENHIISKDFLKYDLNEVFN-KEPFAIIGNFPYNISTQIV 124

Query: 135 FNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           F  +   D  P F      +FQKEV +RI  +K S  YG LSVLT    +A  +F + P 
Sbjct: 125 FKTLEMRDQIPEFAG----MFQKEVAQRICEKKGSKVYGILSVLTQAFYEAEYLFTVPPE 180

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           VF P PKV S V+      N  +PC  +   ++ + AF +RRKTLR SLK     + L  
Sbjct: 181 VFNPPPKVDSGVLRLRRKENYSLPCDEKMFFRVVKTAFQQRRKTLRNSLKSFNFSDNLKL 240

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
             I  +LR E L++E F  IT  +T
Sbjct: 241 DTI-FDLRPEQLTVEQFIDITQKIT 264


>gi|15674442|ref|NP_268616.1| dimethyladenosine transferase [Streptococcus pyogenes M1 GAS]
 gi|71910036|ref|YP_281586.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005]
 gi|27151597|sp|Q9A1I0|RSMA_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|13621537|gb|AAK33337.1| putative dimethyladenosine transferase [Streptococcus pyogenes M1
           GAS]
 gi|71852818|gb|AAZ50841.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005]
          Length = 290

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 245 FGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287


>gi|118088399|ref|XP_426165.2| PREDICTED: similar to transcription factor B1, mitochondrial
           [Gallus gallus]
          Length = 350

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 141/291 (48%), Gaps = 27/291 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  I+  +++  +K + QNFLLDL +  KI   +G L    V E+G GPG +T+ +L  
Sbjct: 17  TVGEIIKLFRLRAQKELSQNFLLDLRLTDKIVRQAGKLKNAYVCEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119
           G  +++++EKD +F P L+ +S   P ++ I+  D L    EK F         +    I
Sbjct: 77  GVEQLLLVEKDTRFIPGLQMLSEAAPGKVRIVHGDILTYKMEKAFPNHLKKNWEDEPPNI 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   +S    P  +    +TL FQKEV ER+TA        RL
Sbjct: 137 HIIGNLPFSVSTPLIVKWLENVSKRDGPFIYGRTQMTLTFQKEVAERLTANTGGKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S+++         F I    F P P V   V+HF P + P I    E ++K+ Q  F  R
Sbjct: 197 SIMSQHLCTVDNCFVIPGQAFVPKPDVDVAVVHFTPLVQPKIQQPFELVEKVVQSVFQFR 256

Query: 234 RKTL----------RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           RK            R+ LK+   E L+  A ++  LR   L++  F  + N
Sbjct: 257 RKYCYRGVEILFPERERLKKT--EQLMMAADVDPTLRPFQLTMAHFRNLCN 305


>gi|254555556|ref|YP_003061973.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1]
 gi|300767100|ref|ZP_07077013.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|254044483|gb|ACT61276.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1]
 gi|300495638|gb|EFK30793.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 296

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y +  KK +GQNFL D N+L  I  ++       VIEIG G G LT+ L    A
Sbjct: 15  RAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYL-ARAA 73

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
             V+  E D +  PIL +  + + N + ++  D LK D      +  +   P++++ANLP
Sbjct: 74  HHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNERPLKLVANLP 132

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N ++ D     +E++ ++ QKEV +R+ A+  +  YG L++   +R  A M
Sbjct: 133 YYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTIAVQYRMAAEM 189

Query: 187 MFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
              +   VF PSP V S ++    +P    +P    +  K+ +  F  RRK L  +L+ L
Sbjct: 190 AMVVPRTVFVPSPNVDSAIVKLTALPPRTHVPFDEAAFFKVVKAGFAHRRKNLWNNLQSL 249

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         +  L  A I+  +RAE L++++F  +T+ L
Sbjct: 250 FGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290


>gi|295099321|emb|CBK88410.1| dimethyladenosine transferase [Eubacterium cylindroides T2-87]
          Length = 289

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 147/275 (53%), Gaps = 17/275 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I   Y +  KK  GQNF+++  +++KIA+++       V EIG G G LTQ L T+ +
Sbjct: 12  KEIQEKYNVFTKKSYGQNFIIEPRVVEKIADAAIKSKDELVFEIGPGIGALTQYL-TMKS 70

Query: 71  RKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANL 125
            +VI  E D +   +L+ +I   H   L+I+  D LKVD     +K+      I   +NL
Sbjct: 71  NQVIAFEIDDRLPEVLENEIGYDH---LKIVLKDILKVDINEEIKKYRKPDQKIVFASNL 127

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +LF    A T P   E +T++ QKEV +R  A +N   Y  LSV+T +R    
Sbjct: 128 PYYITTPILFKLFEA-TEP--IERITVMMQKEVADRFLASQNDKEYNALSVITQYRCDIK 184

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            + D+S HVF+PSP V S V+ F  H        E   K+ +  F +RRKT+  + + L 
Sbjct: 185 KVMDVSRHVFWPSPNVDSAVLQFTFHHKYNLKDEELFFKMVKACFVQRRKTIYNNFQTLF 244

Query: 246 GE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
            +      LL +A +++++RA+  ++EDF R+  +
Sbjct: 245 KDKEEALQLLEKAQLKSSIRAQQCTLEDFIRLYEV 279


>gi|253700557|ref|YP_003021746.1| dimethyladenosine transferase [Geobacter sp. M21]
 gi|251775407|gb|ACT17988.1| dimethyladenosine transferase [Geobacter sp. M21]
          Length = 275

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 145/278 (52%), Gaps = 17/278 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI  KK  GQNFL+D ++L +I           ++E+G G G L+++L   GAR  + +E
Sbjct: 3   KIRAKKEFGQNFLVDDSVLTRIVACVAPTADDCILEVGPGRGALSRLLAESGAR-FLAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLL 134
            D++  P+LK   +   N +EI   D L+VD              ++ ANLPYNI +++L
Sbjct: 62  WDRELLPLLKAEFATAQN-VEIGHGDILRVDLPLLLGSRVEGKKWKVAANLPYNISSQVL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F ++        +E L L+ QKEVG+R+TA      YG L+VL          F + P  
Sbjct: 121 FRFMEHSE---LFEKLVLMLQKEVGDRLTAPPACKEYGALTVLLRLHFDIRREFIVKPGS 177

Query: 195 FFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGEN---- 248
           F P PKV S V+ F+P   P +    E L +++ + AF +RRKTL  SL+  G ++    
Sbjct: 178 FRPVPKVDSAVLSFLPLPGPRVEVGDEELFRRVVKGAFLQRRKTLLNSLRSSGFDDADGF 237

Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
               L ++GI+   R E LS+E+F R+T  L   + +A
Sbjct: 238 LSAALSRSGIDGGRRGETLSLEEFARLTRELLAGKTLA 275


>gi|28377358|ref|NP_784250.1| dimethyladenosine transferase [Lactobacillus plantarum WCFS1]
 gi|33516929|sp|Q88Z93|RSMA_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|28270190|emb|CAD63089.1| dimethyladenosine transferase (putative) [Lactobacillus plantarum
           WCFS1]
          Length = 296

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y +  KK +GQNFL D N+L  I  ++       VIEIG G G LT+ L    A
Sbjct: 15  RAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYL-ARAA 73

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
             V+  E D +  PIL +  + + N + ++  D LK D      +  +   P++++ANLP
Sbjct: 74  HHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNERPLKLVANLP 132

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N ++ D     +E++ ++ QKEV +R+ A+  +  YG L++   +R  A M
Sbjct: 133 YYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTIAVQYRMAAEM 189

Query: 187 MFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
              +   VF PSP V S ++    +P    +P    +  K+ +  F  RRK L  +L+ L
Sbjct: 190 AMVVPRTVFVPSPNVDSAIVKLTALPLRTHVPFDEAAFFKVVKAGFAHRRKNLWNNLQSL 249

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         +  L  A I+  +RAE L++++F  +T+ L
Sbjct: 250 FGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290


>gi|197294383|ref|YP_001798924.1| dimethyladenosine transferase [Candidatus Phytoplasma australiense]
 gi|226732607|sp|B1V9I5|RSMA_PHYAS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|171853710|emb|CAM11607.1| Dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) [Candidatus
           Phytoplasma australiense]
          Length = 284

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/267 (37%), Positives = 145/267 (54%), Gaps = 24/267 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK  GQNFL D+N+LKKI  S  +L G  VIEIG G G+LT  L+T  A  ++  E D 
Sbjct: 5   PKKKYGQNFLKDVNLLKKIV-SKANLKGKNVIEIGPGKGSLTN-LITKEANLLLAYEID- 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              P LK        +++II DD LK     DF+ +F+I+  + +I+NLPY I T +LF 
Sbjct: 62  ---PTLKPFLVFDTTKIKIIYDDFLKRDLVKDFDNYFSINCQLSLISNLPYYITTTILFK 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I      P     TL+ QKEVG R+ AQ NS +Y  LSV+T +      + ++  H+FF
Sbjct: 119 IIQT----PQIVDATLMMQKEVGMRLMAQPNSKNYNALSVITQYFFNIEKIQEVKSHMFF 174

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRL----GGEN 248
           P PKV S V+    H +       S +K      + AF ++RKTL  +L  +      E 
Sbjct: 175 PQPKVDSVVLKLSKHKSDFNTFSTSSQKNFITFVKAAFKQKRKTLLNNLSSVFLLPKTEI 234

Query: 249 LL--HQAGIETNLRAENLSIEDFCRIT 273
           +L   Q  + T +RAE +++++F +I+
Sbjct: 235 ILFFEQNKLLTKIRAEEITLKEFQKIS 261


>gi|90416846|ref|ZP_01224775.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2207]
 gi|90331193|gb|EAS46437.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2207]
          Length = 266

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 143/264 (54%), Gaps = 12/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL+D +I+ +I  + G      +IEIG G   +T+ L+      + V+E D+ 
Sbjct: 8   RKRFGQNFLVDQHIIGQIVAAIGPSADDNLIEIGPGTAAITEHLIQ-RCPTMKVVELDRD 66

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L +  + +P+   I   DALK DF +F +    +R++ NLPYNI T +LF+ +   
Sbjct: 67  LVGFLTEKFADYPD-FSIYSGDALKTDFAQFHD-GRQLRLVGNLPYNISTPILFHLLKNR 124

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           T     + +  + Q+EV +R++A   S  YGRLS++  +  +   +  + P  F P+PKV
Sbjct: 125 T---LIKDMHFMLQREVVDRLSAAPGSKTYGRLSIMVQYHCRVMPLIPVPPSAFRPAPKV 181

Query: 202 TSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            S ++   PH +  PC  E+   L +I   AF +RRKTLR  ++      +  +A ++ +
Sbjct: 182 QSAIVRLKPH-STKPCLAENEELLSQIVSLAFQQRRKTLRNGIRAYAEHLVGVEAVVDLS 240

Query: 259 LRAENLSIEDFCRITNILTDNQDI 282
            RAE+LS+ DF  ++N +  NQ I
Sbjct: 241 RRAEDLSVADFVALSNYI--NQRI 262


>gi|260584339|ref|ZP_05852086.1| dimethyladenosine transferase [Granulicatella elegans ATCC 700633]
 gi|260157857|gb|EEW92926.1| dimethyladenosine transferase [Granulicatella elegans ATCC 700633]
          Length = 306

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 149/281 (53%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  + I  KK +GQNFL++ NIL K+ + +       VIEIG G G LTQ L    A
Sbjct: 25  REIMERHGIKVKKSLGQNFLIEPNILTKMLDVADVNKETNVIEIGPGIGALTQRL-ARAA 83

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
           +KV+  E D +  P+L+D  S H N + +I +D LKVD E    + F++   + ++ANLP
Sbjct: 84  KKVLAFEIDGRLIPVLEDTLSDHDN-VTVIHEDILKVDLETVIQEHFDVEERLLVVANLP 142

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ + + +    P  +   ++ QKEV ER+TAQ NS  YG L+V   +   A +
Sbjct: 143 YYITTPIIMDLLESGL--PI-DGFAMMMQKEVAERMTAQPNSKAYGSLTVAIQYWCHAKI 199

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--- 241
            F +   VF P+P V S ++       P+    +      + + +F +RRKTL  +L   
Sbjct: 200 GFIVPKTVFNPAPNVDSAILVLERREEPLVTVKDEAFFFDLVKNSFVQRRKTLWNNLVKA 259

Query: 242 ---KRLGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276
               +L  E +   L    IE N RAE L+IE+F  ++N L
Sbjct: 260 YVPGKLTKEQIQEALDSVSIEPNRRAETLTIEEFAALSNQL 300


>gi|71902882|ref|YP_279685.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180]
 gi|94989731|ref|YP_597831.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10270]
 gi|251783338|ref|YP_002997643.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|118600903|sp|Q1JIN6|RSMA_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365851|sp|Q48VC6|RSMA_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71801977|gb|AAX71330.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180]
 gi|94543239|gb|ABF33287.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10270]
 gi|242391970|dbj|BAH82429.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 298

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 18  KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 76

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 77  AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 135

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 136 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 192

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 193 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 252

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 253 FGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295


>gi|94987854|ref|YP_595955.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429]
 gi|94991737|ref|YP_599836.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS2096]
 gi|118600901|sp|Q1JDL6|RSMA_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600902|sp|Q1JNI8|RSMA_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94541362|gb|ABF31411.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429]
 gi|94545245|gb|ABF35292.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS2096]
          Length = 298

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 18  KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 76

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 77  AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 135

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 136 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 192

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 193 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRRKTLWNNLTSH 252

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 253 FGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295


>gi|239825621|ref|YP_002948245.1| dimethyladenosine transferase [Geobacillus sp. WCH70]
 gi|259494250|sp|C5D363|RSMA_GEOSW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|239805914|gb|ACS22979.1| dimethyladenosine transferase [Geobacillus sp. WCH70]
          Length = 291

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 144/282 (51%), Gaps = 22/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  Y    KK +GQNFL+D NIL+KI + +   D    IEIG G G LT+  L   A
Sbjct: 12  REILEKYGFSFKKSLGQNFLIDTNILRKIVDFAELSDETGAIEIGPGIGALTEQ-LARRA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           +KV+  E DQ+  PIL+D  S + N + II  D LK D  +     F   + I ++ANLP
Sbjct: 71  KKVVAFEIDQRLLPILEDTLSPYGN-IRIIHQDVLKADIHRVISEEFTGMTDIMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   ++ D  P     + ++ QKEV +R+ A+  +  YG LS+   + T+A  
Sbjct: 130 YYVTTPIIMKLLT-DRLP--IRGMVVMLQKEVADRLAAKPGTKDYGSLSIAIQYYTEAET 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR 243
           +  +   VF P P V S VI  I    P P  +E      ++ + +F +RRKT+  +L  
Sbjct: 187 VMTVPRTVFIPQPNVDSAVIRLIKRKQP-PVKVEDEAFFFQVVRASFAQRRKTILNNLVN 245

Query: 244 LGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                       E +L +  I+   R E L++E+F  ++N L
Sbjct: 246 NLPNGKAMKEQIERVLTETDIDPRRRGETLTMEEFAALSNAL 287


>gi|188992955|ref|YP_001904965.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|226732640|sp|B0RUI3|RSMA_XANCB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|167734715|emb|CAP52925.1| Dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris]
          Length = 262

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 138/265 (52%), Gaps = 12/265 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73
           S +    KK +GQ+FL D   + +I ++     G  ++EIG G G +T  +L   GA  +
Sbjct: 3   SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRPGQHLVEIGPGQGAITFPLLRKHGA--L 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D+     L D ++    +L+II  D L VDF    +  +PIR++ NLPYNI + +
Sbjct: 61  TVIEFDRDLIAPLTDAAAPI-GQLQIIHRDVLAVDFTAVAD-GTPIRLVGNLPYNISSPI 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +   +       +  + QKEV +R+ A   S  YGRLSV+     + T +F + P 
Sbjct: 119 LFHALDHASA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250
            F P PKV S V+  +P  +     ++  K+   + +  FG+RRKTLR +L  +      
Sbjct: 176 AFRPPPKVDSAVVRLVPR-DAASVLIKDRKRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             AG+  + RAE L + DF R+ N+
Sbjct: 235 EAAGVRPDARAEQLEVADFIRLANV 259


>gi|156973129|ref|YP_001444036.1| dimethyladenosine transferase [Vibrio harveyi ATCC BAA-1116]
 gi|166221714|sp|A7MWC6|RSMA_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|156524723|gb|ABU69809.1| hypothetical protein VIBHAR_00808 [Vibrio harveyi ATCC BAA-1116]
          Length = 269

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 137/263 (52%), Gaps = 13/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHKD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P P   L  L+++ +E F +RRKT+R   K L    +L + G+ 
Sbjct: 184 PKVDSAVVRLVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKALISAEVLEELGVN 243

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            ++R ENL+++ F  + N L DN
Sbjct: 244 PSMRPENLTLQQFVAMANWLADN 266


>gi|160882017|ref|YP_001560985.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg]
 gi|189028804|sp|A9KL97|RSMA_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|160430683|gb|ABX44246.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg]
          Length = 290

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 149/280 (53%), Gaps = 19/280 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L+ Y+ I +K  GQNFL+D ++L+KI  S+       V+EIG G G +TQ L    AR+
Sbjct: 13  VLNRYRFIFQKKFGQNFLIDTHVLEKIIRSAEITKDDLVLEIGPGIGTMTQYLCE-NARE 71

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129
           V+ +E D+   PIL+  +    + + II +D LKVD  +     N   PI+++ANLPY I
Sbjct: 72  VVAVEIDKNLIPILEQDTLSSYDNVTIINEDILKVDINQIVKEKNGGKPIKVVANLPYYI 131

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     A       +++T++ QKEV +R+ +   S  YG LS+   +     ++ +
Sbjct: 132 TTPIIMGLFEAHVP---IDNITVMVQKEVADRMQSGPGSKDYGALSLAVQYYADPYIVAN 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSL------ 241
           + P+ F P P V S VI    H + P+    E+L  K+ + +F +RRKTL   L      
Sbjct: 189 VPPNCFMPRPNVGSAVIRLTLHQDAPVKVKNENLLFKLIRASFNQRRKTLANGLNNSPEI 248

Query: 242 ---KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              K +  E  + + G+   +R E L++E F ++ +I+ +
Sbjct: 249 SLPKEMISE-AIEELGVVATIRGEALTLEQFAKLADIIDE 287


>gi|154505613|ref|ZP_02042351.1| hypothetical protein RUMGNA_03152 [Ruminococcus gnavus ATCC 29149]
 gi|153794052|gb|EDN76472.1| hypothetical protein RUMGNA_03152 [Ruminococcus gnavus ATCC 29149]
          Length = 307

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 152/291 (52%), Gaps = 21/291 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y  + +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 21  TLGNPQNTI-AVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDFVLEIGPGIGTM 79

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ  L   A KV  +E D+   PIL+D    + N +++I +D LKVD  +     N   P
Sbjct: 80  TQ-YLACAAGKVAAVEIDKALIPILEDTLDGYDN-VQVINEDVLKVDIAELAKQENEGKP 137

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++      +  P   +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 138 IKVVANLPYYITTPIIMGLFE-NHVP--MKSITVMVQKEVADRMQVGPGTKDYGALSLAV 194

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235
            +  K  ++ ++ P+ F P PKV S VI    +  P P  ++  K   +I + +F +RRK
Sbjct: 195 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLDRYEEP-PVQVKDEKLMFRIIRASFNQRRK 253

Query: 236 TLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           TL   LK        +   E  +   G   ++R E L++E+F  + N L+D
Sbjct: 254 TLANGLKNSPELDFTKEQIEAAIGHLGRGASIRGEALTLEEFAELANYLSD 304


>gi|94993613|ref|YP_601711.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10750]
 gi|118600904|sp|Q1J8J4|RSMA_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94547121|gb|ABF37167.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10750]
          Length = 298

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 18  KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 76

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 77  AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 135

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 136 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 192

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 193 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVEDEDFFFRVSRLSFVHRRKTLWNNLTSH 252

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 253 FGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295


>gi|255658924|ref|ZP_05404333.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544]
 gi|260848874|gb|EEX68881.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544]
          Length = 292

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 147/278 (52%), Gaps = 17/278 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  + +   K +GQNFL+D  I++ I E++    G  V+EIG G G LTQ L   GA  
Sbjct: 22  ILKAFGLRMSKKLGQNFLIDARIVQGIVEAAEIEPGDRVLEIGPGIGTLTQGLAEAGA-D 80

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  +E D++   +LK+    + N + I+  D LKV+  +     +P ++ ANLPY I T 
Sbjct: 81  VTAVELDKKLPTVLKETLKAYDN-VRIVPGDILKVNIPEIMG-DAPFKVAANLPYYITTP 138

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +L   +  +   P    +T++ Q+EV ER+TA+  S  YG LSV   + T+  ++ D+ P
Sbjct: 139 ILMTLL--ERRLPITHMVTMV-QREVAERMTAKPGSRIYGALSVAVQYYTEPQIVLDVPP 195

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG---- 246
             F P+P+V S V+       P     +     ++ + AFG+RRKTL  +LK  GG    
Sbjct: 196 RSFIPAPEVMSVVVSCRVRKEPAVAVQDEKLFFRVVKAAFGQRRKTLMNALK--GGGFSK 253

Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
               + L Q+GI+   R E L++E+F R+ +     ++
Sbjct: 254 EAVRDALEQSGIDPTRRGETLTLEEFGRLADAFAAEEN 291


>gi|148652714|ref|YP_001279807.1| dimethyladenosine transferase [Psychrobacter sp. PRwf-1]
 gi|148571798|gb|ABQ93857.1| dimethyladenosine transferase [Psychrobacter sp. PRwf-1]
          Length = 296

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 142/273 (52%), Gaps = 18/273 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79
           P+K  GQNFL D +I+ +I ++ G      ++EIG G G LT+ LL  + A  VI +++D
Sbjct: 23  PRKRFGQNFLHDASIISEIVDAIGLNRDDNLVEIGPGMGALTEPLLEQVDAMTVIELDRD 82

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLPYNIGTRLLF 135
                 ++  ++ HPN   I+  +A++ D+   ++  S     +R++ NLPYNI T LLF
Sbjct: 83  LAGSLRIRIGANSHPN-FTIVNANAMQFDYHSLYDADSETPKKLRVVGNLPYNISTPLLF 141

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +    +    E +  + QKEV ERITA+  S  YGRLSV+  +      +  +    F
Sbjct: 142 TLLE---YADIIEDMHFMLQKEVVERITAEVGSKIYGRLSVIMQYFCDTQYLLTVPRGAF 198

Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR------LGGE 247
            P PKVTS V    PH + P+    E L   + +E F  RRKTLR   K+      L  E
Sbjct: 199 NPPPKVTSAVFRLRPHQVKPVQADDEKLFALVVRETFNHRRKTLRAIFKQSSLMPTLTDE 258

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +L    GI+ N R E L + DF  ++N++   Q
Sbjct: 259 DLA-SIGIDGNARPETLDVNDFVALSNLVIAKQ 290


>gi|293557287|ref|ZP_06675834.1| dimethyladenosine transferase [Enterococcus faecium E1039]
 gi|291600574|gb|EFF30879.1| dimethyladenosine transferase [Enterococcus faecium E1039]
          Length = 294

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 153/284 (53%), Gaps = 20/284 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L    A
Sbjct: 14  KEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAK-HA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E D +  P+L D    + N + I+  D LK D      + F+   P++++ANLP
Sbjct: 73  KQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ +++ ++      + L ++ QKEV +RI+A+  +  YG LS+   +  +A++
Sbjct: 132 YYITTPIMMHFLESNL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S ++       P     +  +  ++T+ AF +RRKTL  +L+  
Sbjct: 189 AFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHS 248

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            G++          L  AGI+   R E LS+++F  ++N +++N
Sbjct: 249 YGKDDQTKAWLAKSLGTAGIDPKRRGETLSLQEFAALSNAMSEN 292


>gi|255691159|ref|ZP_05414834.1| dimethyladenosine transferase [Bacteroides finegoldii DSM 17565]
 gi|260623254|gb|EEX46125.1| dimethyladenosine transferase [Bacteroides finegoldii DSM 17565]
          Length = 262

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/255 (35%), Positives = 136/255 (53%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEVDY 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKMLDN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P PK
Sbjct: 122 KDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178

Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    + +  + C  +  K++ +  F +RRKTLR S+K + G++         N 
Sbjct: 179 VKSAVIRMTRNEVQELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDSLFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+E+F  +TN
Sbjct: 239 RPEQLSVEEFIDLTN 253


>gi|254522856|ref|ZP_05134911.1| dimethyladenosine transferase [Stenotrophomonas sp. SKA14]
 gi|219720447|gb|EED38972.1| dimethyladenosine transferase [Stenotrophomonas sp. SKA14]
          Length = 267

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 133/256 (51%), Gaps = 10/256 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL D + + KI  +    DG  ++EIG G G +T  LL +   K+ VIE D+ 
Sbjct: 17  KKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +++    L I+  D L+VDF +      PIR++ NLPYNI + +LF+ +   
Sbjct: 76  LIAPLT-AAAEPLGELTIVHRDVLRVDFTEL-AAGQPIRLVGNLPYNISSPILFHALEHA 133

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                   +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PKV
Sbjct: 134 A---VVRDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCQVTSLFVVPPGAFRPPPKV 190

Query: 202 TSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            S V+  +P  +P    +   K+   + + AFG+RRKTLR +L  +        AG+  +
Sbjct: 191 DSAVVRLVPR-DPASIGINDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFIAAGVRPD 249

Query: 259 LRAENLSIEDFCRITN 274
            RAE L + +F  + N
Sbjct: 250 ARAEQLDVAEFVALAN 265


>gi|153807426|ref|ZP_01960094.1| hypothetical protein BACCAC_01706 [Bacteroides caccae ATCC 43185]
 gi|149129788|gb|EDM21000.1| hypothetical protein BACCAC_01706 [Bacteroides caccae ATCC 43185]
          Length = 266

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/255 (36%), Positives = 133/255 (52%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++      + ++E+G G G LTQ L+    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLKVAQDIADTVDPFPELPILEVGPGMGVLTQFLVK-KERPVKVVEVDY 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKMLDN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P PK
Sbjct: 122 KDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +      C E L K++ +  F +RRKTLR S+K + G+          N 
Sbjct: 179 VKSAVIRMTRNDTQELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDTLFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+E+F  +TN
Sbjct: 239 RPEQLSVEEFIDLTN 253


>gi|332971060|gb|EGK10030.1| dimethyladenosine transferase [Desmospora sp. 8437]
          Length = 294

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 150/280 (53%), Gaps = 19/280 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L+   +  KK +GQ+FL D  IL K+ E++G      V+EIG G G LT+ L  + A
Sbjct: 14  RQLLAERGLRLKKSLGQHFLTDRRILDKMMEAAGLGPEAGVLEIGPGIGALTERL-AVEA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126
            +V+ +E D++  P+L  + S  P+ + I+Q D + +D  +         S I ++ANLP
Sbjct: 73  GQVVAVELDERLIPVLSSLFSDQPH-VRIVQGDVMSLDLSRLLQDHLGDCSRISVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   +  +  P   + + ++ QKEV ER+TA   S  YG ++V T +  +   
Sbjct: 132 YYVTTPILMRLLE-EKLP--LDRIVIMIQKEVAERLTASPGSKAYGSITVATRYYAETEW 188

Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLK-- 242
           +  +  HVF P P+V S VI   I    P+    E+L  ++ + AFG+RRKTL  +L   
Sbjct: 189 VTKVPAHVFVPRPQVDSAVIRLKIRQRPPVEVRDEALLFRVIRAAFGQRRKTLLNALSTG 248

Query: 243 RLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            + GE       +L + GI+   R E LS+E+F  ++N L
Sbjct: 249 AVDGEGKETISRVLSETGIDPKRRGETLSLEEFALLSNRL 288


>gi|314932715|ref|ZP_07840085.1| dimethyladenosine transferase [Staphylococcus caprae C87]
 gi|313654545|gb|EFS18297.1| dimethyladenosine transferase [Staphylococcus caprae C87]
          Length = 296

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 145/278 (52%), Gaps = 22/278 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+ KI ++S   D   VIE+G G G+LT+ L    A
Sbjct: 13  RALLDQYGFNFKKSLGQNFLVDVNIINKIIDASQIDDTTGVIEVGPGMGSLTEQLAK-NA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLP 126
           +KV+  E DQ+  P+LKD  + + N + II +D LK +  K  +        I ++ANLP
Sbjct: 72  KKVMSFEIDQRLIPVLKDTLAPYDN-VTIINEDILKANISKAVHTHLSDCEKIMVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A   +  YG LS++  + T+ + 
Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNATVGTKAYGSLSIVAQYYTETSK 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           +  +   VF P P V S V+  +    HL  +    E+  K+ + AF +RRKT+  + + 
Sbjct: 188 VLTVPKSVFMPPPNVDSIVVKLMQREEHLVQVDNE-EAFFKLAKAAFAQRRKTINNNYQN 246

Query: 244 LGGENLLHQAG---------IETNLRAENLSIEDFCRI 272
              +   H+A          I+   R E L+I DF  +
Sbjct: 247 FFKDGKKHKASILDWLESAEIDPKRRGETLTIHDFANL 284


>gi|50913600|ref|YP_059572.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10394]
 gi|50902674|gb|AAT86389.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10394]
          Length = 298

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 18  KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 76

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 77  AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 135

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 136 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 192

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 193 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEIKDEDFFFRVSRLSFVHRRKTLWNNLTSH 252

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 253 FGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295


>gi|306834382|ref|ZP_07467499.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338]
 gi|304423555|gb|EFM26704.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338]
          Length = 290

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 147/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N +++I +D LK D +    +F N   PI+I+ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKIVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFVVPRTVFIPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI +F ++ + L +
Sbjct: 245 FGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287


>gi|196250755|ref|ZP_03149442.1| dimethyladenosine transferase [Geobacillus sp. G11MC16]
 gi|196209705|gb|EDY04477.1| dimethyladenosine transferase [Geobacillus sp. G11MC16]
          Length = 478

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 24/283 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL+ Y    KK +GQNFL+D NIL+KI +++G       IEIG G G LT+ L    A
Sbjct: 197 KEILARYGFSFKKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARR-A 255

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
           +KV+  E D +  PIL D  S + N + II  D LK D      E+F  +S  + ++ANL
Sbjct: 256 KKVVAFEIDSRLLPILADTLSAYDN-VRIIHQDVLKADLHAVIAEEFAEVSDRM-VVANL 313

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++ +  P     + ++ QKEV +R+ A+  +  YG L++   + T+A 
Sbjct: 314 PYYVTTPIIMKLLT-ERLP--IRGMVVMMQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 370

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL- 241
           ++  +   VF P P V S VI      +P P  +E  +   ++ + +F +RRKTL  +L 
Sbjct: 371 VVMTVPRTVFMPQPNVDSAVIRLTKRSHP-PVAVEDEEVFFQVVRASFAQRRKTLLNNLL 429

Query: 242 --------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   K+   E  L   GI+   R E L + +F  ++N L
Sbjct: 430 NNLPDGKEKKEQIERALDAVGIDPRRRGETLDMAEFASLSNAL 472


>gi|293375923|ref|ZP_06622184.1| dimethyladenosine transferase [Turicibacter sanguinis PC909]
 gi|325838710|ref|ZP_08166625.1| dimethyladenosine transferase [Turicibacter sp. HGF1]
 gi|292645445|gb|EFF63494.1| dimethyladenosine transferase [Turicibacter sanguinis PC909]
 gi|325490760|gb|EGC93067.1| dimethyladenosine transferase [Turicibacter sp. HGF1]
          Length = 291

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 145/280 (51%), Gaps = 20/280 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+  +    KK  GQNFL D NIL KI  ++   D + VIEIG G G LT+  +   A
Sbjct: 11  KEIIEKHGFTFKKSFGQNFLTDTNILNKIVNAADLNDEVGVIEIGPGIGALTE-FIARKA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           +KV+  E D +  PIL +  + + N +++I  D LK D     E+ F     I ++ANLP
Sbjct: 70  KKVVAYEIDPRLIPILAETLAPYDN-VKVIHQDILKADVASMIEEEFKDVKHIAVVANLP 128

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L   I     P  W     + QKEV ER++A   S  Y  LS+   + T+A +
Sbjct: 129 YYITTPILMGLIE-KKLPIDW--YVTMMQKEVAERLSANPGSKDYNALSIAVQYYTEAKI 185

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR 243
             ++   VF P+P V S+V+       P    +E+     +I   AF +RRKT++ +L +
Sbjct: 186 ALNVPKTVFIPAPNVDSSVVKLTKREQP-AVAVENEDFFLEIVHAAFKQRRKTIQNNLNQ 244

Query: 244 ----LGGEN---LLHQAGIETNLRAENLSIEDFCRITNIL 276
               L  E+   LL +AGI  + R E L+IE+F  ++N+ 
Sbjct: 245 HFNDLAKEDVTKLLEEAGIVPSRRGETLTIEEFGHLSNVF 284


>gi|257865533|ref|ZP_05645186.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30]
 gi|257871870|ref|ZP_05651523.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10]
 gi|257875149|ref|ZP_05654802.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20]
 gi|257799467|gb|EEV28519.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30]
 gi|257806034|gb|EEV34856.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10]
 gi|257809315|gb|EEV38135.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20]
          Length = 295

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 148/280 (52%), Gaps = 21/280 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL+ +    KK +GQNFL + NIL+KI E++G  +   VIE+G G G LT+ L    A
Sbjct: 14  KEILAKHGFTFKKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQLAK-HA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
           ++V+  E D +  P+L D    + N ++II  D L+ D        F + ++ ++++ANL
Sbjct: 73  KQVLAFEIDDRLIPVLADTMQPYQN-VKIIHQDVLQADLATTIQSAFSDTAASLKVVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T ++ +++ +       + + ++ QKEV +RI+A   +  YG LS+   +  +A 
Sbjct: 132 PYYITTPIMMHFLESQVK---VDEMVVMMQKEVADRISAVPGTKAYGSLSIAVQYYMEAK 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243
           + F +   VF P P V S ++       P     +  +  K+T+ AF  RRKTL  +L+ 
Sbjct: 189 LAFIVPKTVFVPQPNVDSAILKLTRRSQPAVAVTDEKEFFKLTKAAFQLRRKTLWNNLQN 248

Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
             G+         + L  +GI+   R E LS+ +F +++N
Sbjct: 249 SYGKDETTKQWLADSLEASGIDPKRRGETLSLAEFAKLSN 288


>gi|139473080|ref|YP_001127795.1| dimethyladenosine transferase [Streptococcus pyogenes str.
           Manfredo]
 gi|62900490|sp|Q5XDX4|RSMA_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221708|sp|A2RCH2|RSMA_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|134271326|emb|CAM29544.1| dimethyladenosine transferase [Streptococcus pyogenes str.
           Manfredo]
          Length = 290

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEIKDEDFFFRVSRLSFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 245 FGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287


>gi|322412722|gb|EFY03630.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 290

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMAAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+          ++++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKNEDFFFRVSRLSFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 245 FGKSEDIKAKLEKGLALANIKPSIRGEALSIQDFGKLADALKE 287


>gi|52078537|ref|YP_077328.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580]
 gi|52783899|ref|YP_089728.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580]
 gi|319648566|ref|ZP_08002780.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2]
 gi|62900505|sp|Q65PH9|RSMA_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|52001748|gb|AAU21690.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580]
 gi|52346401|gb|AAU39035.1| KsgA [Bacillus licheniformis ATCC 14580]
 gi|317389333|gb|EFV70146.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2]
          Length = 292

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 147/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL+ Y    KK +GQNFL+D NIL +I + +G  +   VIEIG G G LT+ L    A
Sbjct: 12  KEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAK-RA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           +KV   E DQ+  PIL+D  S + N + +I  D LK D     ++ F     + ++ANLP
Sbjct: 71  KKVTAFEIDQRLLPILEDTLSPYDN-VTVIHQDVLKADVRAVMDEQFQDCDEVMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +  P   + + ++ QKEV +R+ A+ +S  YG LS+   + T+A  
Sbjct: 130 YYVTTPIIMKLLE-ENLP--LKGIVVMLQKEVADRMAAKPSSKEYGSLSIAVQFYTEAKT 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--- 241
           + ++   VF P P V S VI       P     ++    ++ + +F +RRKTL  +L   
Sbjct: 187 VMNVPKTVFVPQPNVDSAVIRLTLRKEPAVAVQDAAFFFQVVKASFAQRRKTLFNNLVNN 246

Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                  +   E  L  + I+   R E+LSIE+F  +++ L +
Sbjct: 247 LPNGKENKSKIERALQDSHIDGKRRGESLSIEEFAVLSDRLRE 289


>gi|221135222|ref|ZP_03561525.1| dimethyladenosine transferase [Glaciecola sp. HTCC2999]
          Length = 267

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 141/262 (53%), Gaps = 16/262 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ +I  +    +   ++EIG G G LT+ +  +    + V+E D+ 
Sbjct: 11  RKRFGQNFLNDDYVIDQIVSAIAPNNDDIMVEIGPGLGALTEPVCDV-VEHLNVVELDRD 69

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+    +HP   ++L +I+ DAL+ DF +      P+++  NLPYNI T L+F+  
Sbjct: 70  LAKRLR----EHPFMSSKLNVIEADALQFDFTELAK-QGPLKVFGNLPYNISTPLMFHLF 124

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              T+    + +  + QKEV  R+ A+    +YGRLSV+  +      + ++ P  F P 
Sbjct: 125 ---TFTNQIKDMHFMLQKEVVNRLAARPGHKNYGRLSVMAQYYCTVVPVIEVPPEAFTPP 181

Query: 199 PKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           PKV S V+  IPH  P P     L++L+K+T  AF +RRKT+R SLK +   ++L   GI
Sbjct: 182 PKVDSAVVRLIPHQTP-PVEVNELKALEKVTALAFNQRRKTIRNSLKSVIDADVLTSIGI 240

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +   RAE LS+  F  I N  T
Sbjct: 241 DPVWRAEGLSLAQFALIANHAT 262


>gi|289551708|ref|YP_003472612.1| Dimethyladenosine transferase [Staphylococcus lugdunensis HKU09-01]
 gi|315660340|ref|ZP_07913193.1| dimethyladenosine transferase [Staphylococcus lugdunensis M23590]
 gi|289181239|gb|ADC88484.1| Dimethyladenosine transferase [Staphylococcus lugdunensis HKU09-01]
 gi|315494629|gb|EFU82971.1| dimethyladenosine transferase [Staphylococcus lugdunensis M23590]
          Length = 296

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 146/277 (52%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L+ +    KK +GQNFL+D+NI+ KI ++S   +   VIEIG G G+LT+ L    A
Sbjct: 13  KELLTRFGFNFKKSLGQNFLVDVNIIHKIIDASDIDERTGVIEIGPGMGSLTEQLAK-KA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
           ++VI  E DQ+  P+L    + + N + +I +D LK D       + N    I ++ANLP
Sbjct: 72  KQVIAFEIDQRLIPVLDYTLAPYEN-VTVINEDILKADIAAAVHTYLNDCEKIMVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A   +  YG LS++T + T+ + 
Sbjct: 131 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNATVGTKAYGSLSIVTQYYTETSK 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+    +  +  K+ + AF +RRKT+  + +  
Sbjct: 188 VVTVPKSVFMPPPNVDSIVVKLMQRSQPLVDIDDETAFFKLAKAAFAQRRKTINNNYQNH 247

Query: 245 GGENLLHQ---------AGIETNLRAENLSIEDFCRI 272
             +   H+         A I+   R E LSI+DF R+
Sbjct: 248 FKDGKKHKEAILSWLNAAEIDPKRRGETLSIQDFARL 284


>gi|269103551|ref|ZP_06156248.1| dimethyladenosine transferase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163449|gb|EEZ41945.1| dimethyladenosine transferase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 270

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 134/263 (50%), Gaps = 13/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +  L      VIE D+ 
Sbjct: 12  RKRFGQNFLTDPFIIDGIVSAINPRSGQNLVEIGPGLGAITEEVGKL-VDHFNVIELDRD 70

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP+   +L I + DA++ DF K     + +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPDLGPKLTINEGDAMRFDFTKLIREDAKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              T+    + +  + QKEV  R+ A      YGRL+V+  +  K   + ++ P  F P+
Sbjct: 127 ---TYHKDVQDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYCKVMPVLEVPPESFVPA 183

Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P+   P PC  L+ L ++ +E F +RRKT+R   K L     +   G+ 
Sbjct: 184 PKVDSAVVRLTPYETLPFPCTNLKWLDRVCREGFNQRRKTVRNCFKALMTAEQIEALGVN 243

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            + R EN+S+E F  + N L  N
Sbjct: 244 PSDRPENISVEKFVALANWLDAN 266


>gi|229823539|ref|ZP_04449608.1| hypothetical protein GCWU000282_00837 [Catonella morbi ATCC 51271]
 gi|229786983|gb|EEP23097.1| hypothetical protein GCWU000282_00837 [Catonella morbi ATCC 51271]
          Length = 296

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/274 (36%), Positives = 148/274 (54%), Gaps = 22/274 (8%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGAR 71
           I+  + I  KK +GQNFL++  +L+K+ E+ G +D   TVIEIG G G LTQ  L   A+
Sbjct: 16  IMRRFDIQMKKSLGQNFLIEPRMLEKMIEA-GQVDADTTVIEIGPGIGALTQ-YLAHHAK 73

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPY 127
           +V+  E DQ+F  IL++  +   N ++++  D L VDF      +    S + ++ANLPY
Sbjct: 74  QVLAFEIDQRFVGILQETLADCDN-VQVVHQDILSVDFSSPEYAWLQDQSRLVVVANLPY 132

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++   I ++   PF +SL ++ QKEV ER+TA   +  YG LSV      ++ + 
Sbjct: 133 YITTPIIMRLIESNL--PF-QSLVMMMQKEVAERMTAAVGTKAYGSLSVAIQLEMESEIA 189

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +  +VF P P V S V+       P+      E+ +   Q  F +RRKTL  +LK   
Sbjct: 190 FIVPKNVFIPKPNVDSAVLKLTRRPAPLVQVSDKEAFQAFVQAGFKQRRKTLWNNLKSAY 249

Query: 246 GENLL---------HQAGIETNLRAENLSIEDFC 270
             +LL          QAGIE N RAE+LS+ +F 
Sbjct: 250 VPDLLSEDSLRQVFDQAGIEPNRRAESLSLMEFA 283


>gi|92113048|ref|YP_572976.1| dimethyladenosine transferase [Chromohalobacter salexigens DSM
           3043]
 gi|119365016|sp|Q1QZ31|RSMA_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91796138|gb|ABE58277.1| dimethyladenosine transferase [Chromohalobacter salexigens DSM
           3043]
          Length = 282

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 133/260 (51%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80
           +K  GQNFL D  ++ +I           +IEIG G G LT+ LL  +GA +VI +++D 
Sbjct: 22  RKRFGQNFLRDTGVIDRIVRVIAPRSDQRLIEIGPGQGALTEPLLDAVGALEVIELDRD- 80

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLLFN 136
              P L+     +P+   I + DAL+ DF            P+R+I NLPYNI T L+F+
Sbjct: 81  -LIPGLRVQFFNYPD-FVIHEGDALQFDFAALAAEGETPGKPLRVIGNLPYNISTPLIFH 138

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++A         +  + Q+EV ER+ A   S  +GRLSV+T +  +   +F +    F 
Sbjct: 139 LLTARGA---IADMHFMLQREVVERLAATPGSAAWGRLSVMTQYHCRVDNLFVVPAEAFT 195

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++  IPH  P     +      I +EAFG+RRKTLR +LK    +       
Sbjct: 196 PRPKVESAIVRLIPHDEPPHVAHDEALFGDIVREAFGQRRKTLRNNLKTRLDDTAWAALD 255

Query: 255 IETNLRAENLSIEDFCRITN 274
           I+   R + LS+E+  RI N
Sbjct: 256 IDPGRRPQTLSVEELVRIAN 275


>gi|27151614|sp|Q9RU68|RSMA_DEIRA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 292

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 144/273 (52%), Gaps = 18/273 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+  G  V+EIG G G LT+ + + G
Sbjct: 28  VRALLAAHGLKPTKSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREVASRG 87

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V  +EKD++  P+L +  +     + +I  DAL  D+     + +  R+IANLPY I
Sbjct: 88  AR-VTALEKDERLRPVLAETLAGL--DVNVIWGDALDFDYAA---LPAGTRVIANLPYYI 141

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              LL  ++ A    P   S T+L QKEV +R+ AQ    +YG LS +         + D
Sbjct: 142 TGLLLTRFMQA----PGVVSATVLVQKEVAQRLVAQPGQDNYGFLSAVAALYGSVKHVRD 197

Query: 190 ISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--G 246
           +    FFP+P VTS+V+        P P    +       A   RRKTLR +L+ +G  G
Sbjct: 198 VPKGAFFPAPDVTSSVVRLDFDRTRPQPD--PAFVSFVDNALRYRRKTLRNNLRMMGHSG 255

Query: 247 ENL---LHQAGIETNLRAENLSIEDFCRITNIL 276
           E +   L   G+  ++RAE++ +     +   L
Sbjct: 256 EAIDAALSDLGLRPDVRAEDVPLSGLRAVAAAL 288


>gi|320547549|ref|ZP_08041834.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812]
 gi|320447624|gb|EFW88382.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812]
          Length = 290

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 146/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N +++I +D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++ + +F  RRKTL  +L   
Sbjct: 185 AFIVPRTVFVPAPNVDSAILKMTRREEPLVKVKDEDFFFRVAKISFVHRRKTLWNNLISH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI DF ++ + L +
Sbjct: 245 FGKAEETKAKLEKALEIAEIKPSIRGEALSIADFAKLADALKE 287


>gi|228473773|ref|ZP_04058518.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274794|gb|EEK13617.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC
           33624]
          Length = 258

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 140/260 (53%), Gaps = 12/260 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL +L+I ++IA +   +    V+EIG G G LTQ LL     +V VIE D 
Sbjct: 8   PKKHLGQHFLTNLSIAQQIANTLSEVGYDRVLEIGPGTGVLTQFLLGKNI-EVFVIEIDT 66

Query: 81  QFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           +    L+    QH ++L+  I+ +D LK D    F+   P  II N PYNI ++++F  +
Sbjct: 67  ESVTYLE----QHFSKLKGHILGEDFLKFDIVSHFS-KKPFAIIGNFPYNISSQIVFKLL 121

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               + P     + +FQKEV ERI  +  S  YG LSVLT        +F +S HVF P 
Sbjct: 122 EIRDFVP---EFSGMFQKEVAERICEKAGSKTYGILSVLTQAFYDTEYLFTVSEHVFNPP 178

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI      N  +PC  +   +I + AFG+RRKTLR SLK    E    ++    
Sbjct: 179 PKVKSGVIRLKRKENYSLPCEEKLFFQIVKTAFGQRRKTLRNSLKSFLIEKESLKSDPLF 238

Query: 258 NLRAENLSIEDFCRITNILT 277
           + R E LS+E+F  +   L 
Sbjct: 239 DKRPEMLSVEEFITLAQWLA 258


>gi|54295765|ref|YP_128180.1| dimethyladenosine transferase [Legionella pneumophila str. Lens]
 gi|62900486|sp|Q5WSM3|RSMA_LEGPL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|53755597|emb|CAH17099.1| hypothetical protein lpl2855 [Legionella pneumophila str. Lens]
 gi|307611813|emb|CBX01526.1| hypothetical protein LPW_32131 [Legionella pneumophila 130b]
          Length = 256

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 136/261 (52%), Gaps = 12/261 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79
           P+K  GQNFL D  I+ +I  +   L    ++EIG G G LTQ LL  L     I I+ D
Sbjct: 5   PRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLLQKLNRLTAIEIDTD 64

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            Q +     +S     +L +I  DAL VDF +F      +R++ NLPYNI T LL   + 
Sbjct: 65  LQSYLTCLPVSQ---GKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYLLK 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             T     + +  + QKEV ERI A   +  YGRLSV+  +  +   +FD+ P  F P P
Sbjct: 119 FITC---IDDMHFMLQKEVVERIAAAHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPRP 175

Query: 200 KVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S ++   PH ++P      E L+ I  +AF  RRKTL  +LK +   + L+  GI+ 
Sbjct: 176 KVDSAIVRLTPHRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGIDG 235

Query: 258 NLRAENLSIEDFCRITNILTD 278
             R E +S+ ++ ++   +++
Sbjct: 236 GKRPEQISVAEYVQLAKFISN 256


>gi|325917326|ref|ZP_08179544.1| dimethyladenosine transferase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536460|gb|EGD08238.1| dimethyladenosine transferase [Xanthomonas vesicatoria ATCC 35937]
          Length = 262

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 12/265 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73
           S +    KK +GQ+FL D   + +I ++     G  ++EIG G G +T  +L   GA  +
Sbjct: 3   SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGA--L 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D+     L + ++     L II  D L VDF    N  +PIR++ NLPYNI + +
Sbjct: 61  TVIEFDRDLIAPLTEAAAPI-GELSIIHRDVLSVDFTDVAN-GTPIRLVGNLPYNISSPI 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +           +  + QKEV +R+ A   S  YGRLSV+     + T +F + P 
Sbjct: 119 LFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250
            F P PKV S V+  +P  +P    +   ++   + +  FG+RRKTLR +L  +      
Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVMINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             AG+  + RAE L + DF R+ N+
Sbjct: 235 EAAGVRPDARAEQLEVADFIRLANV 259


>gi|324517882|gb|ADY46945.1| Dimethyladenosine transferase 1 [Ascaris suum]
          Length = 362

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 148/283 (52%), Gaps = 30/283 (10%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +L+  +  YK+  K+ + QNFL+D+N+ +KI  ++G  +G  V+EIG GPG +T+ +L  
Sbjct: 13  ALRDFIHMYKLNAKRILSQNFLMDMNLTRKIVRAAGIEEGDRVVEIGPGPGGITRAILEA 72

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------SPI 119
           G  ++ VIE D++F P L+ ++    +RL I   DALK D    +  +         +P 
Sbjct: 73  GCERLDVIEIDKRFIPPLQHLAEASGSRLHIHHADALKTDIGAIWQANATEGTSWDDAPP 132

Query: 120 R--IIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           R  ++ NLP++I + L+  ++         W      LTL FQ EV  RI    +S    
Sbjct: 133 RLHVVGNLPFHIASPLIIKYLREMHTRKSAWSYGRVPLTLTFQMEVARRICGPIDSEVRA 192

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFG 231
           R+S+++ + ++  ++F+I    F P PK+   V+ FIP + P I    E ++KI +  F 
Sbjct: 193 RISIMSTFVSEPKILFEIPGSCFVPKPKINVGVVRFIPRIEPLIKSAFEVVEKICRHIFH 252

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE--DFCRI 272
            R+K + + ++ L  E+L           AE+LS E    CRI
Sbjct: 253 YRQKYVIKCVRTLYPESL-----------AESLSHELLSVCRI 284


>gi|319765025|ref|YP_004128962.1| dimethyladenosine transferase [Alicycliphilus denitrificans BC]
 gi|330827220|ref|YP_004390523.1| dimethyladenosine transferase [Alicycliphilus denitrificans K601]
 gi|317119586|gb|ADV02075.1| dimethyladenosine transferase [Alicycliphilus denitrificans BC]
 gi|329312592|gb|AEB87007.1| dimethyladenosine transferase [Alicycliphilus denitrificans K601]
          Length = 255

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 138/264 (52%), Gaps = 16/264 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+  LG  ++ VI
Sbjct: 2   KHIPRKRFGQHFLSDPGIIDAIVRAIAPRPGQHMVEIGPGLAALTQPLVERLG--RLTVI 59

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSP-IRIIANLPYNIGTRLL 134
           E D+     L+    QH  +L++I+ D LKVDF +    +++P IR++ NLPYNI T +L
Sbjct: 60  ELDRDLAARLR----QH-GQLDVIESDVLKVDFTQVAQTLAAPKIRVVGNLPYNISTPIL 114

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ ++        E    + QKEV +R+ A   +  YGRLSV+  WR     +  + P  
Sbjct: 115 FHLMAHVQ---IIEDQHFMLQKEVIDRMVAAPATAAYGRLSVMLQWRYAMEDVLFVPPGS 171

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGENLLHQA 253
           F P P+V S V+  +PH  P       L ++ Q AF +RRK LR +L R L G    +  
Sbjct: 172 FDPPPRVDSAVVRMLPHARPAAVDEALLSELVQVAFSQRRKLLRHTLGRWLEGHG--YAG 229

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           G +T  RAE + +  +  +   L 
Sbjct: 230 GFDTQRRAEEVPVAHYVALAQELA 253


>gi|241896677|ref|ZP_04783973.1| dimethyladenosine transferase [Weissella paramesenteroides ATCC
           33313]
 gi|241870158|gb|EER73909.1| dimethyladenosine transferase [Weissella paramesenteroides ATCC
           33313]
          Length = 298

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 147/282 (52%), Gaps = 21/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ + I  KK +GQNFL D+NILK I  +        VIEIG G G LT+ L    A
Sbjct: 14  QAIMNSFGINTKKSLGQNFLTDINILKNIVAAGNVQPTDNVIEIGPGIGALTEQL-ARAA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANL 125
           ++V+  E D +  P+L+   + + N + ++  D L VD E+     F +  +P++++ANL
Sbjct: 73  KQVVAFEIDDRLIPVLEHTMAPYDN-VTVVNQDILTVDLEQAIKEHFTDPEAPLKLVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L   + +D     + ++ ++ QKEV  R++A+  +  YG L++   +R  AT
Sbjct: 132 PYYITTPILMQVLQSDVK---FANIVVMMQKEVASRLSAEVGTKDYGALTLAVQYRMNAT 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           + F +S   F P+P V S +I   P   L  +P   + L  + +  F  RRKTL  +L  
Sbjct: 189 LAFTVSRTAFVPNPNVDSAIISLTPREPLKVLPHNEKQLFNLFKIGFTMRRKTLWNNLIT 248

Query: 244 LGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
             G++          L    ++  +RAE LS+E F  + N L
Sbjct: 249 AFGKDDAMKAKLTAALADIDLDPRIRAEKLSLEKFIDLHNAL 290


>gi|302332206|gb|ADL22399.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 297

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 145/277 (52%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    A
Sbjct: 14  RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANLP
Sbjct: 73  KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ + 
Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         QAGI++  R E LSI+DF ++
Sbjct: 249 FKDGKQHKEVILQWLEQAGIDSRRRGETLSIQDFAKL 285


>gi|15605077|ref|NP_219862.1| dimethyladenosine transferase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789080|ref|YP_328166.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13]
 gi|166154566|ref|YP_001654684.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu]
 gi|166155441|ref|YP_001653696.1| dimethyladenosine transferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335829|ref|ZP_07224073.1| dimethyladenosine transferase [Chlamydia trachomatis L2tet1]
 gi|27151560|sp|O84358|RSMA_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365015|sp|Q3KM04|RSMA_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729770|sp|B0B7S3|RSMA_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729771|sp|B0BBY8|RSMA_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|3328775|gb|AAC67949.1| Dimethyladenosine Transferase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167610|gb|AAX50618.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13]
 gi|165930554|emb|CAP04049.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu]
 gi|165931429|emb|CAP07003.1| dimethyladenosine transferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|296435873|gb|ADH18047.1| dimethyladenosine transferase [Chlamydia trachomatis G/9768]
 gi|296436799|gb|ADH18969.1| dimethyladenosine transferase [Chlamydia trachomatis G/11222]
 gi|296437733|gb|ADH19894.1| dimethyladenosine transferase [Chlamydia trachomatis G/11074]
 gi|297140232|gb|ADH96990.1| dimethyladenosine transferase [Chlamydia trachomatis G/9301]
 gi|297748484|gb|ADI51030.1| Dimethyladenosine transferase [Chlamydia trachomatis D-EC]
 gi|297749364|gb|ADI52042.1| Dimethyladenosine transferase [Chlamydia trachomatis D-LC]
          Length = 277

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/265 (36%), Positives = 141/265 (53%), Gaps = 17/265 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++LL+ GA  VI +EKD  
Sbjct: 21  KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139
             P+ ++  SQ P  +EI   DA K       +       RI+ANLPY+I T LL  +  
Sbjct: 78  --PMFEESLSQLPMDIEIT--DACKYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P  W+++T++ Q EV  RITA+     YG L+V   +       F +SP+ F+P P
Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKP 191

Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253
            V S V+H   H         +E    +T+ AFG+RRK L  SLK L  ++    +L Q 
Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G     R E + +E++ +I ++L D
Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|311028973|ref|ZP_07707063.1| dimethyladenosine transferase [Bacillus sp. m3-13]
          Length = 296

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 143/282 (50%), Gaps = 22/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL+ I E     +    IEIG G G LT+ +    A
Sbjct: 12  KEILDKYGFSFKKSLGQNFLIDTNILRNIVEYGEVSEKTAAIEIGPGIGALTEQIAKR-A 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
            KV   E DQ+  PIL+D  S + N + +I  D LK D  +           +R+IANLP
Sbjct: 71  GKVFAFEIDQRLLPILEDTLSPYDN-VTVIHKDILKADVTELIGEELKAYEEVRVIANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +  P   +S+T++ QKEV ER+ A+  +  YG LS+   + T+A  
Sbjct: 130 YYVTTPIIMKLLQ-EGLP--LKSITVMLQKEVAERMAAKPGTKEYGSLSIAVQYFTQAET 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL-- 241
           +  +   VF P P V S VI  +    P P  ++      ++ + +FG+RRKT+  +L  
Sbjct: 187 VMIVPKTVFVPQPNVDSAVIRLVVREEP-PVRVKDEDFFFEVVRASFGQRRKTILNNLQS 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                  K+ G E  L    I+   R E LSIE+F  +++ L
Sbjct: 246 NLPDGKAKKQGIEAALATTSIDPKRRGETLSIEEFGALSDEL 287


>gi|325922418|ref|ZP_08184187.1| dimethyladenosine transferase [Xanthomonas gardneri ATCC 19865]
 gi|325547115|gb|EGD18200.1| dimethyladenosine transferase [Xanthomonas gardneri ATCC 19865]
          Length = 262

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 133/258 (51%), Gaps = 12/258 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQ 80
           KK +GQ+FL D   + +I ++     G  ++EIG G G +T  +L   GA  + VIE D+
Sbjct: 10  KKSLGQHFLADRYYIDRIVQAVAPRAGQHLVEIGPGQGAITFPLLRKHGA--LTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L D ++     L II  D L VDF    N  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTDAAAPI-GALSIIHRDVLSVDFTALAN-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PK
Sbjct: 126 AGA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182

Query: 201 VTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           V S V+  +P  +P    ++  ++   + +  FG+RRKTLR +L  +        A +  
Sbjct: 183 VDSAVVRLVPR-DPATVLIKDRRRFADVVRAGFGQRRKTLRNALSEVCEPAHFEAAQVRP 241

Query: 258 NLRAENLSIEDFCRITNI 275
           + RAE L + DF R+ N+
Sbjct: 242 DARAEQLEVADFIRLANV 259


>gi|121534378|ref|ZP_01666202.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1]
 gi|121307148|gb|EAX48066.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1]
          Length = 283

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 139/278 (50%), Gaps = 19/278 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  + I   K +GQNFL+D  ++  I  ++    G  V+EIG G G LTQ L   GA  
Sbjct: 15  ILKTFGIQMSKKLGQNFLVDEQVVDGIVAAAAVKPGEAVLEIGPGIGTLTQGLAEAGA-N 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  +E D+Q   +L    + + N + II  D L++D  +    +   ++IANLPY I T 
Sbjct: 74  VTAVELDRQLLDVLAKTLAGYDN-VRIIHGDILRIDISREIR-AEKFKVIANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++   +  +  P   E +  + QKEV ER+ A   S  YG LSV   + T+  +MF + P
Sbjct: 132 IIMRLLE-ERLP--VELMVTMVQKEVAERMVAAPGSKDYGALSVAVQFYTQPEIMFVVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG--- 246
             F P+P V S VI       P P  +   K   ++ + AF +RRKTL  +LK  GG   
Sbjct: 189 QAFIPAPAVESAVIRCRVRSAP-PVSVTDEKAFFRVVKAAFAQRRKTLANALK--GGGIA 245

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
               + +L Q GI+   R E L++ +F  + N  T  Q
Sbjct: 246 QEVVDAMLRQTGIDGGRRGETLTLAEFAALANAWTSRQ 283


>gi|323706303|ref|ZP_08117869.1| dimethyladenosine transferase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534355|gb|EGB24140.1| dimethyladenosine transferase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 273

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 142/270 (52%), Gaps = 22/270 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNF+ D  IL KI + SG      VIEIGAG G LT+ +L   A  V+  E D++
Sbjct: 10  KKRLGQNFIFDEGILSKIVDLSGITKNDNVIEIGAGLGTLTRKILE-KANMVVSYEIDKE 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNW 137
            + ILK       N L ++ DD +KVD     + +F      +++ANLPY I + ++   
Sbjct: 69  AYEILKADFKGRDN-LIVLNDDIMKVDLRETVDAYFG-GEKCKVVANLPYYITSPIIMKL 126

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           + +       + +T++ QKEV ERI A+     YG L+V   + +K  ++ ++ P VF P
Sbjct: 127 LES----RLMKDITIMVQKEVAERICAKPGGKDYGVLTVAVNYYSKPEILLNLPPEVFSP 182

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRLGGE-----N 248
            PKV+S++I    H+   P      +K    I + +FG+RRK +  SLK L  +     +
Sbjct: 183 KPKVSSSLIKL--HVLDKPSVFVKDEKLFFRIVKSSFGQRRKVITNSLKSLSIDQSIIAD 240

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L + GI+   R E LSIE F  + N + D
Sbjct: 241 ALTKCGIDLKQRGETLSIEKFAELANTIYD 270


>gi|15806536|ref|NP_295249.1| dimethyladenosine transferase [Deinococcus radiodurans R1]
 gi|6459288|gb|AAF11091.1|AE001996_6 dimethyladenosine transferase [Deinococcus radiodurans R1]
          Length = 336

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 145/277 (52%), Gaps = 26/277 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+  G  V+EIG G G LT+ + + G
Sbjct: 72  VRALLAAHGLKPTKSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREVASRG 131

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR V  +EKD++  P+L +  +     + +I  DAL  D+     + +  R+IANLPY I
Sbjct: 132 AR-VTALEKDERLRPVLAETLAGL--DVNVIWGDALDFDYAA---LPAGTRVIANLPYYI 185

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              LL  ++ A    P   S T+L QKEV +R+ AQ    +YG LS +         + D
Sbjct: 186 TGLLLTRFMQA----PGVVSATVLVQKEVAQRLVAQPGQDNYGFLSAVAALYGSVKHVRD 241

Query: 190 ISPHVFFPSPKVTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           +    FFP+P VTS+V+        P  +P      +       A   RRKTLR +L+ +
Sbjct: 242 VPKGAFFPAPDVTSSVVRLDFDRTRPQPDP------AFVSFVDNALRYRRKTLRNNLRMM 295

Query: 245 G--GENL---LHQAGIETNLRAENLSIEDFCRITNIL 276
           G  GE +   L   G+  ++RAE++ +     +   L
Sbjct: 296 GHSGEAIDAALSDLGLRPDVRAEDVPLSGLRAVAAAL 332


>gi|29840068|ref|NP_829174.1| dimethyladenosine transferase [Chlamydophila caviae GPIC]
 gi|33301245|sp|Q823V2|RSMA_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|29834416|gb|AAP05052.1| dimethyladenosine transferase [Chlamydophila caviae GPIC]
          Length = 278

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 145/278 (52%), Gaps = 17/278 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L   L+  +  PKK + QNFL+D NIL+KI   S    G  V+EIG G G LT++L+  G
Sbjct: 9   LTRFLAQVQGRPKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPY 127
           A  V+ +EKD    P+ ++   Q P  LEI   DA K    +          R++ANLPY
Sbjct: 69  AH-VVALEKD----PMFEETLKQLPIDLEIT--DACKYPLSQLEEKGWQGKGRVVANLPY 121

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I T LL         P  W+++T++ Q EV  RITAQ     YG L++   +       
Sbjct: 122 HITTPLLTKLFLE--VPNQWKTVTVMMQDEVARRITAQPGGKEYGSLTIFLQFFADVRYA 179

Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +SP  FFP P+V+S V+H  +    P+   L +    +T+ AFG+RRK L  +LK L 
Sbjct: 180 FKVSPGCFFPKPQVSSAVVHMTVKETFPLETSLHQKFFSLTRAAFGQRRKLLANALKDLY 239

Query: 246 GENL----LHQAGIETNLRAENLSIEDFCRITNILTDN 279
            + L    L+Q       R E LS+ ++ ++ ++L+ N
Sbjct: 240 PKELVFSALNQLNFSEKTRPETLSLNEYLQLFHLLSSN 277


>gi|199597856|ref|ZP_03211282.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
           rhamnosus HN001]
 gi|258509566|ref|YP_003172317.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG]
 gi|199591292|gb|EDY99372.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
           rhamnosus HN001]
 gi|257149493|emb|CAR88466.1| Dimethyladenosine transferase [Lactobacillus rhamnosus GG]
 gi|259650833|dbj|BAI42995.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG]
          Length = 294

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 139/278 (50%), Gaps = 18/278 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  +    +K +GQNFL D  IL+KI  ++   +   VIEIG G G LTQ L    A 
Sbjct: 13  AILKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLAD-QAH 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPY 127
           +V+ +E D +  PIL +  + +PN   ++ +D LK +  +     F+ +  ++++ANLPY
Sbjct: 72  QVVALEIDDRLLPILAETLADYPNT-TVVNEDVLKTNLTELVATHFDGNHTLKVVANLPY 130

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T +L + + A   P    S+T++ QKEV  R++A   S  YG LS+           
Sbjct: 131 YITTPILLHLLRAH-LP--LHSMTVMMQKEVAARLSAVPGSKDYGSLSIAVQLVADVATA 187

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +S H F P+P V S ++       P+      ES  ++ + AF  RRKTL  +L  L 
Sbjct: 188 FTVSRHAFVPAPNVDSAIVTLTQRSEPLATVQSPESFDRLVRGAFASRRKTLWNNLVALF 247

Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           G+         L  A I    RAE L+I DF R+   L
Sbjct: 248 GKPNKDAIRTALSVAEIAPETRAEQLAIADFARLDEAL 285


>gi|167748007|ref|ZP_02420134.1| hypothetical protein ANACAC_02744 [Anaerostipes caccae DSM 14662]
 gi|167652584|gb|EDR96713.1| hypothetical protein ANACAC_02744 [Anaerostipes caccae DSM 14662]
          Length = 286

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 18/277 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y    +K  GQNFL+D ++L+KI +++   +   V+EIG G G +TQ  L+  AR+
Sbjct: 13  IIQKYNFDFQKKFGQNFLIDSHVLEKIIDAANITEDDFVLEIGPGIGTMTQ-YLSEHARE 71

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129
           V+ +E D    PILK+  + + N +E++ +D LKVD  K     N   PI+++ANLPY I
Sbjct: 72  VMAVEIDHNLIPILKETLAGYDN-VEVLNEDILKVDIGKIAEKKNQGRPIKVVANLPYYI 130

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++      +       SLT++ QKEV +R+ A   +  YG LS+   +  +  ++ +
Sbjct: 131 TTPIIMGLFEKNVP---MNSLTVMVQKEVAQRMQAGPGTKDYGALSLAVQFYAEPYIVAN 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLK----- 242
           + P+ F P PKV S VI    + + P+    E L   I + +F +RRKTL+  +      
Sbjct: 188 VPPNCFMPRPKVGSAVIRLTRYKDMPVKVKNEQLMFSIIRASFNQRRKTLQNGINNSSTL 247

Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276
               E +   L + G+   +R E LS+E F R++++L
Sbjct: 248 HFSKEQVVDALDKMGLSPKIRGEALSLEQFARLSDLL 284


>gi|18311499|ref|NP_563433.1| dimethyladenosine transferase [Clostridium perfringens str. 13]
 gi|110799025|ref|YP_697204.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124]
 gi|110801894|ref|YP_699773.1| dimethyladenosine transferase [Clostridium perfringens SM101]
 gi|168213441|ref|ZP_02639066.1| dimethyladenosine transferase [Clostridium perfringens CPE str.
           F4969]
 gi|169343266|ref|ZP_02864277.1| dimethyladenosine transferase [Clostridium perfringens C str.
           JGS1495]
 gi|182624345|ref|ZP_02952130.1| dimethyladenosine transferase [Clostridium perfringens D str.
           JGS1721]
 gi|27151580|sp|Q8XHG8|RSMA_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600857|sp|Q0TMD6|RSMA_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600859|sp|Q0SQ34|RSMA_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|18146183|dbj|BAB82223.1| dimethyladenosine transferase [Clostridium perfringens str. 13]
 gi|110673672|gb|ABG82659.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124]
 gi|110682395|gb|ABG85765.1| dimethyladenosine transferase [Clostridium perfringens SM101]
 gi|169298564|gb|EDS80645.1| dimethyladenosine transferase [Clostridium perfringens C str.
           JGS1495]
 gi|170715038|gb|EDT27220.1| dimethyladenosine transferase [Clostridium perfringens CPE str.
           F4969]
 gi|177910563|gb|EDT72936.1| dimethyladenosine transferase [Clostridium perfringens D str.
           JGS1721]
          Length = 285

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 144/279 (51%), Gaps = 14/279 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K    K ++  Y     K +GQNFL+D ++ + I   +   +   VIEIG G G LT  L
Sbjct: 7   KDIKTKELVQKYNFRFSKSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVGTLTVQL 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   A++V+ IE D    PIL      +P + ++I +DALKVDF +       ++++ANL
Sbjct: 67  LK-RAKRVVAIELDSSLIPILTAELGDNP-KFQLIHNDALKVDFNEIIGDEKSVKLVANL 124

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++ N +        ++SLT++ QKEV ER+ A+ N   YG LS+L  +     
Sbjct: 125 PYYVTTPIIVNLLKGGYN---FKSLTIMIQKEVAERMNAEPNCKDYGALSILVQYYCNTK 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK 242
           ++  + P  F P PKV S VI  +  L      +++ K   +I + AF  RRKTL  + K
Sbjct: 182 IVRKVPPSCFIPRPKVDSIVIR-LERLEEPSVKVKNEKLFFEIVRHAFNMRRKTLWNATK 240

Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            +       E    +AGI+   R E LS+ +F  +++ +
Sbjct: 241 NVKLPKELMEKAYEEAGIDPKRRGETLSLAEFGALSDAI 279


>gi|227894433|ref|ZP_04012238.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047]
 gi|227863803|gb|EEJ71224.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047]
          Length = 294

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 150/287 (52%), Gaps = 24/287 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D N +  I E++    G  VIEIG G G+LT+ LL  GA
Sbjct: 14  RAIINRYFVKAKKNLGQNFLVDQNAILGIVEAANIQSGDQVIEIGPGIGSLTEQLLLAGA 73

Query: 71  RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIR 120
            KV   E D     IL     K I  +    R ++   D LK +FEK    FF++  PI+
Sbjct: 74  -KVFAYEVDDSLPEILHNELPKKIDGEPLEARFKLTLKDVLKANFEKDLTGFFDMGKPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  +  YG L++    
Sbjct: 133 VVANLPYYITTPIIFVLAESDLH---FTSLTLMMQKEVAERLEAKPGNKEYGPLTISVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTL 237
                +  ++    F P P+V S+V+   P L   P  +E+ K    + +  F +RRKTL
Sbjct: 190 EMNVRLALEVKNTSFMPRPRVDSSVVVLTP-LKDKP-AIENRKHFIWVVKMCFSQRRKTL 247

Query: 238 RQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             +LK L  +     +L+ +  ++  +R E+LSIE F  I   +  N
Sbjct: 248 NNNLKTLIPDTDQRADLIKKLDVDPRIRPEDLSIEQFIEIARNIPSN 294


>gi|330878396|gb|EGH12545.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 268

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 141/259 (54%), Gaps = 7/259 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ V+E D+ 
Sbjct: 10  RKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLGSGA-QLDVVELDKD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+F+ +   
Sbjct: 69  LIPILNSQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  F P PKV
Sbjct: 128 S---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKV 184

Query: 202 TSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S ++  +P+   P P      L+++ +EAF +RRKTLR +L+ L   + +  +G++ +L
Sbjct: 185 DSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLRLLLSSDEITASGVDGSL 244

Query: 260 RAENLSIEDFCRITNILTD 278
           R E L +  F R+ + L++
Sbjct: 245 RPEQLDLAAFVRLADTLSE 263


>gi|82750200|ref|YP_415941.1| dimethyladenosine transferase [Staphylococcus aureus RF122]
 gi|82655731|emb|CAI80130.1| dimethyladenosine transferase [Staphylococcus aureus RF122]
          Length = 303

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 145/278 (52%), Gaps = 20/278 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    
Sbjct: 19  MRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARH 77

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANL 125
           A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANL
Sbjct: 78  AKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANL 136

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ +
Sbjct: 137 PYYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETS 193

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243
            +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + + 
Sbjct: 194 KVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQN 253

Query: 244 LGGENLLH---------QAGIETNLRAENLSIEDFCRI 272
              +   H         QAGI+   R E LSI+DF ++
Sbjct: 254 YFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 291


>gi|229542292|ref|ZP_04431352.1| dimethyladenosine transferase [Bacillus coagulans 36D1]
 gi|229326712|gb|EEN92387.1| dimethyladenosine transferase [Bacillus coagulans 36D1]
          Length = 295

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 151/281 (53%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL+ Y    KK +GQNFL+D NIL+ I +++   +   V+EIG G G LT+  L   +
Sbjct: 12  KAILNRYGFSFKKSLGQNFLIDPNILRNITDTADLTEESGVVEIGPGIGALTEH-LARRS 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126
           +KV+  E D++  PILKD  + +PN + +I +D LK D  K         + I ++ANLP
Sbjct: 71  KKVVAFEIDKRLAPILKDTLAPYPN-VNVIYEDVLKADVGKVLETEFAGINDIMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++  +++   +P     + ++ QKEV +RI+A   + +YG LS+   +   A +
Sbjct: 130 YYVTTPIILKFVTG-LYP--IRGMVVMLQKEVADRISAVPGTKNYGTLSIAIQYYMTAEV 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLKR- 243
              +   VF P P V S V+  +    P +    E+   ++ + +F +RRKTL  +L   
Sbjct: 187 AMIVPKTVFMPQPNVDSAVVKLVKRDKPKVEVKDEAFFFQVAKASFAQRRKTLINNLTAG 246

Query: 244 -LGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276
             GG++       +L Q  IE + R E LS+E+F  ++N L
Sbjct: 247 LPGGKDKKETLLSVLEQLKIEPSRRGETLSLEEFAALSNAL 287


>gi|325288376|ref|YP_004264557.1| dimethyladenosine transferase [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963777|gb|ADY54556.1| dimethyladenosine transferase [Syntrophobotulus glycolicus DSM
           8271]
          Length = 297

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 157/302 (51%), Gaps = 33/302 (10%)

Query: 3   MNNKSHSLK---TILSHYKII------PKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53
           MNN S  LK   T+L + K +       +K +GQNFL+   +++ I  + G      V+E
Sbjct: 1   MNNSSKDLKRKETLLQYTKRVLRGGKTIRKSLGQNFLVSAEVVESIVAAIGENHFWPVVE 60

Query: 54  IGAGPGNLTQMLLTLGARKV---IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           IG+GPG LT+ L    A KV     +E DQ+   IL++     P +++I+Q DALK++ E
Sbjct: 61  IGSGPGGLTRAL----AEKVDQLWAVELDQENVEILRE--EMPPEKVKILQADALKLNLE 114

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
           + +       ++ NLPY I   LL +++   +       + ++ QKEV ER+TA+     
Sbjct: 115 ELWGKQKGW-LVGNLPYYITNPLLMHFLEQSS---NLFGMIVMVQKEVAERMTAKPGGKE 170

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQ 227
           YG LS+       A ++F++ P  F P PKVTS V+     + P P   C  +   +I +
Sbjct: 171 YGILSIAVQLAADARILFEVPPTSFHPQPKVTSAVVRL--DIRPFPDFDCERDEFFRIVK 228

Query: 228 EAFGKRRKTLRQSLK---RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            AF +RRKTL  +L     +  E +   L +AG+E   RAE LSI DF  +T  +T  + 
Sbjct: 229 AAFAQRRKTLANALSAGLHISKEEVITALGKAGLEGKRRAETLSIADFQEVTRQMTGRKQ 288

Query: 282 IA 283
           ++
Sbjct: 289 VS 290


>gi|163791033|ref|ZP_02185454.1| dimethyladenosine transferase [Carnobacterium sp. AT7]
 gi|159873678|gb|EDP67761.1| dimethyladenosine transferase [Carnobacterium sp. AT7]
          Length = 297

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 144/283 (50%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+  Y    KK +GQNF++D NIL  I  +S       VIE+G G G LT+ L    +
Sbjct: 14  KEIMEKYGFSVKKSLGQNFIVDPNILSNIVAASDIDKNTNVIEVGPGIGALTEHL-ARAS 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
           ++VI  E D +  P+L D  S + N + ++  D LKV+ ++      ++  P+ ++ANLP
Sbjct: 73  KEVIAFEIDNRLLPVLADTLSPYDN-ISVVHSDVLKVNLQESLPEMIDLDEPLVVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ +++     P   + LT++ QKEV ERITA   S  YG LS+   +  +A +
Sbjct: 132 YYITTPIIMHFLET---PVRIDGLTIMMQKEVAERITAAPGSKAYGSLSIAIQYYMEAEV 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLK-R 243
            F +   VF P P V S +I       P       +S   + + AF +RRKTL  +L  R
Sbjct: 189 AFIVPKTVFIPQPNVDSAIIKLTRRATPSVTVNNEKSFFALVRSAFVQRRKTLWNNLLIR 248

Query: 244 LGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G E+         L  A I+   R E LS+ +F  +++ + +
Sbjct: 249 YGKEDETREKLIQALEAANIDPKRRGETLSLAEFALLSDAIDE 291


>gi|311070689|ref|YP_003975612.1| dimethyladenosine transferase [Bacillus atrophaeus 1942]
 gi|310871206|gb|ADP34681.1| dimethyladenosine transferase [Bacillus atrophaeus 1942]
          Length = 292

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 145/279 (51%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL +I + +G  +   VIEIG G G LT+ L    A
Sbjct: 12  KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAK-RA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           ++V+  E DQ+  PILKD  S + N + +I  D LK D     E+ F+    I ++ANLP
Sbjct: 71  KQVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVRTVIEEQFHDCDEIMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +  P   + + ++ QKEV ER+ A  +S  YG LS+   + T+A  
Sbjct: 130 YYVTTPIIMKLLE-ENLP--LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAKT 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--- 241
           +  +   VF P P V S VI  +    P    +      ++ + +F +RRKTL  +L   
Sbjct: 187 VMTVPKTVFVPQPNVDSAVIRLLLREGPAVDVVNEAFFFQLIKASFAQRRKTLLNNLVNN 246

Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
                 K+   E +L +  I+   R E LSI++F  ++N
Sbjct: 247 LPQGKEKKSIIEEVLKETQIDGKRRGEALSIDEFAALSN 285


>gi|260818308|ref|XP_002604325.1| hypothetical protein BRAFLDRAFT_125270 [Branchiostoma floridae]
 gi|229289651|gb|EEN60336.1| hypothetical protein BRAFLDRAFT_125270 [Branchiostoma floridae]
          Length = 1177

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 120/216 (55%), Gaps = 14/216 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  Y++   K + QNFL D N+  KI +S+G+L+G  V E+G GPG +T+ +L  
Sbjct: 25  TIRDIVKLYRLNAAKQLSQNFLFDTNLTDKIVKSAGNLEGAYVCEVGPGPGGITRSILKA 84

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSP-------I 119
           GA KV+V+E D++F   L+ +S+  P R+EI+  D L  +  K    +++ P       +
Sbjct: 85  GAAKVVVVELDKRFNAGLRLLSAAAPGRVEIVNADILTYNLAKALPLDLAVPWEGDPPNV 144

Query: 120 RIIANLPYNIGTRLLFNWISA---DTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+N+ T L+  W+ A    T P  +    LTL FQKEV ERI A   S    RL
Sbjct: 145 HIIGNLPFNVSTPLIIRWLEALALRTGPFVYGRTQLTLTFQKEVCERICAPPRSSQRSRL 204

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
           S+++ +  +    F I    F P P V   V+HF P
Sbjct: 205 SIMSQYLCRVKHCFRIPGKCFVPKPDVDVGVVHFTP 240


>gi|16077110|ref|NP_387923.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221307851|ref|ZP_03589698.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312173|ref|ZP_03593978.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221317106|ref|ZP_03598400.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221321369|ref|ZP_03602663.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|585375|sp|P37468|RSMA_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|467431|dbj|BAA05277.1| high level kasgamycin resistance [Bacillus subtilis]
 gi|2632309|emb|CAB11818.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291482413|dbj|BAI83488.1| dimethyladenosine transferase [Bacillus subtilis subsp. natto
           BEST195]
          Length = 292

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/279 (34%), Positives = 144/279 (51%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL +I + +   +   VIEIG G G LT+ L    A
Sbjct: 12  KEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAK-RA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           +KV+  E DQ+  PILKD  S + N + +I  D LK D     E+ F     I ++ANLP
Sbjct: 71  KKVVAFEIDQRLLPILKDTLSPYEN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +  P   + + ++ QKEV ER+ A  +S  YG LS+   + T+A  
Sbjct: 130 YYVTTPIIMKLLE-EHLP--LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAKT 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTL------- 237
           +  +   VF P P V S VI  I    P +    ES   ++ + +F +RRKTL       
Sbjct: 187 VMIVPKTVFVPQPNVDSAVIRLILRDGPAVDVENESFFFQLIKASFAQRRKTLLNNLVNN 246

Query: 238 --RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
                 ++   E +L +  I+   R E+LSIE+F  ++N
Sbjct: 247 LPEGKAQKSTIEQVLEETNIDGKRRGESLSIEEFAALSN 285


>gi|306832261|ref|ZP_07465415.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425700|gb|EFM28818.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 290

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N +++I +D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI +F ++ + L +
Sbjct: 245 FGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287


>gi|288906214|ref|YP_003431436.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34]
 gi|325979187|ref|YP_004288903.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732940|emb|CBI14519.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34]
 gi|325179115|emb|CBZ49159.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 290

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N +++I +D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLHDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++++ +F  RRKTL  +L   
Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI +F ++ + L +
Sbjct: 245 FGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287


>gi|90961211|ref|YP_535127.1| dimethyladenosine transferase [Lactobacillus salivarius UCC118]
 gi|119365028|sp|Q1WV73|RSMA_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|90820405|gb|ABD99044.1| Dimethyladenosine transferase [Lactobacillus salivarius UCC118]
 gi|300214137|gb|ADJ78553.1| Ribosomal RNA small subunit methyltransferase A
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S ribosomal RNA
           dimethyladenosine transferase) (16S ribosomal RNA
           dimethylase) [Lactobacillus salivarius CECT 5713]
          Length = 296

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 148/282 (52%), Gaps = 20/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  Y +  KK +GQNFL D+NILK I  ++   +   VIEIG G G LT+ L    A
Sbjct: 15  RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAK-RA 73

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
            KV+ +E D +  P+L D  S + N +E++  D LK D +      F     ++++ANLP
Sbjct: 74  NKVMALEIDDRLLPVLADTLSPYEN-VEVVHQDILKADLKALIAEHFEPGHKLKLVANLP 132

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + + +      +E++ ++ QKEV ER+ A   +  YG LSV   +   + +
Sbjct: 133 YYITTPILMHLLDSGIE---FETIVVMMQKEVAERLAANPGTKAYGSLSVAVQYEMDSEI 189

Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S +I      + P  P   +  KK+ + +F  RRK+L  +L+ L
Sbjct: 190 AFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKSLWNNLQSL 249

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277
            G++          L  A I+ ++RAE L++ DF  +++ L 
Sbjct: 250 YGKDPETKEKMLQALEVADIKQSIRAEKLTVADFINLSDALV 291


>gi|307091868|gb|ADN28269.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 123

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           LDLN   +IA ++G LDG TVIEIG GPG LT+ LLT GARKVI IE+DQ+    L++I+
Sbjct: 1   LDLNFTGRIARAAGPLDGATVIEIGPGPGGLTRALLTEGARKVIAIERDQRAIAALEEIA 60

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             HP RL I+  DAL+ D +     S P+RI+ANLPYNI T L  +W++A+ WPP+++ L
Sbjct: 61  EHHPGRLTIVAGDALEFDPKPLLE-SGPVRIVANLPYNIATALPVSWLTAEPWPPWYDRL 119

Query: 151 TLLF 154
            L+ 
Sbjct: 120 VLML 123


>gi|21230265|ref|NP_636182.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769742|ref|YP_244504.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|27151570|sp|Q8PCE3|RSMA_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|81304304|sp|Q4UR39|RSMA_XANC8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21111810|gb|AAM40106.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575074|gb|AAY50484.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 262

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 137/265 (51%), Gaps = 12/265 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73
           S +    KK +GQ+FL D   + +I ++     G  ++EIG G G +T  +L   GA  +
Sbjct: 3   SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRPGQHLVEIGPGQGAITFPLLRKHGA--L 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D+     L D ++    +L+II  D L VDF    +  +PIR++ NLPYNI + +
Sbjct: 61  TVIEFDRDLIAPLTDAAAPI-GQLQIIHRDVLAVDFTAVAD-GTPIRLVGNLPYNISSPI 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +           +  + QKEV +R+ A   S  YGRLSV+     + T +F + P 
Sbjct: 119 LFHALDHAGA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250
            F P PKV S V+  +P  +     ++  K+   + +  FG+RRKTLR +L  +      
Sbjct: 176 AFRPPPKVDSAVVRLVPR-DAASVLIKDRKRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             AG+  + RAE L + DF R+ N+
Sbjct: 235 EAAGVRPDARAEQLEVADFIRLANV 259


>gi|227509274|ref|ZP_03939323.1| dimethyladenosine transferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227512287|ref|ZP_03942336.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577]
 gi|227084462|gb|EEI19774.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577]
 gi|227191272|gb|EEI71339.1| dimethyladenosine transferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 301

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ Y++  KK +GQNFL+DLNIL  I E++       VIEIG G G LT+ L    A
Sbjct: 19  QAILNRYRLSAKKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQLAK-AA 77

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D++  P+L +  S + N +EII  D LK +      K F    P++++ANLP
Sbjct: 78  NQVLAFEIDEKLLPVLDETLSPY-NNIEIINQDILKANLPEVVAKRFRTDKPLKVVANLP 136

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ + ++    P  +ES+ ++ QKEV ER+ A+  +  YG LSV+   +    +
Sbjct: 137 YYITTPIVMDLLAN---PVKFESIVVMMQKEVAERLDAKPGTKPYGSLSVIVQQQNDVDI 193

Query: 187 MFDISPHVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +    F P PKV S ++   P   ++  P   +      +  F  +RKTL  +L  +
Sbjct: 194 SFVVPKTAFIPQPKVDSAIVKLSPKMQVDKRPFDHKKFVGFVRGCFMHQRKTLWNNLLGV 253

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITN 274
            G+          +L    I    R E L +E F  +TN
Sbjct: 254 FGKQESVKGQIKKVLDDLSINAANRPEQLQVEQFVALTN 292


>gi|319940876|ref|ZP_08015215.1| dimethyladenosine transferase [Sutterella wadsworthensis 3_1_45B]
 gi|319805758|gb|EFW02539.1| dimethyladenosine transferase [Sutterella wadsworthensis 3_1_45B]
          Length = 265

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/251 (35%), Positives = 135/251 (53%), Gaps = 9/251 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D + +++IA S     G  +IEIG G   LT+ +++L   +  V E D+ 
Sbjct: 12  RKRFGQNFLHDRHWIERIARSIDPKPGDELIEIGPGQAALTREVVSLAGHETAV-EIDRD 70

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+  +   P  L +I+ DAL +D++        +R++ NLPYNI + LLF  + A 
Sbjct: 71  LAAFLR--TQFTPEELTLIEADALTLDWKTVLP-GKRLRVLGNLPYNISSPLLFALLPAA 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                      + QKEV +R+TA   S  YGRLSV+  +R     +FD+ P  F P+PKV
Sbjct: 128 GR---IIDQHFMLQKEVVDRMTAVPGSKTYGRLSVMLQYRYVMHKLFDVPPGAFVPAPKV 184

Query: 202 TSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           TS+++  +P  +  +P   +    +I   AF +RRK LR SL     E+ +  AG+E   
Sbjct: 185 TSSIVRMVPKPVENLPAVDMSVFSEIVAAAFQQRRKMLRGSLSAFLDESSIISAGVEPTA 244

Query: 260 RAENLSIEDFC 270
           RAE LS++DF 
Sbjct: 245 RAETLSVDDFV 255


>gi|259048129|ref|ZP_05738530.1| dimethyladenosine transferase [Granulicatella adiacens ATCC 49175]
 gi|259035190|gb|EEW36445.1| dimethyladenosine transferase [Granulicatella adiacens ATCC 49175]
          Length = 289

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 152/281 (54%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  + +  KK +GQNFL++ NIL ++ E +G      VIEIG G G LT+ L    A
Sbjct: 14  REIMERHGLTVKKSLGQNFLIEPNILTRMLEVAGVDKTTNVIEIGPGIGALTERL-AREA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           ++V+  E D +  P+L +  + + N + ++  D L VD E+     F+I+ P+ ++ANLP
Sbjct: 73  KQVLAFEIDGRLLPVLDETLAPYDN-VTVVHSDILDVDLEQVIGEHFDINEPLLVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ N + +   P   +   ++ QKEV +R+TA+ NS  YG L++   +  +A++
Sbjct: 132 YYITTPIIMNLLESK-LP--IDGFAMMMQKEVAQRMTAEPNSKAYGSLTIAIQYFCEASI 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +  K   + + +F +RRKTL  +L + 
Sbjct: 189 GFIVPKTVFNPAPNVDSAILVLKRREKPLVEVKDEAKFFALVKNSFVQRRKTLWNNLAKA 248

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
              N          L  AGI+   RAE L+IE+F R+++ L
Sbjct: 249 YVGNSHTKESLAAALEVAGIDPTRRAETLTIEEFARLSDAL 289


>gi|194364446|ref|YP_002027056.1| dimethyladenosine transferase [Stenotrophomonas maltophilia R551-3]
 gi|194347250|gb|ACF50373.1| dimethyladenosine transferase [Stenotrophomonas maltophilia R551-3]
          Length = 267

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 134/256 (52%), Gaps = 10/256 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL D + + KI  +    DG  ++EIG G G +T  LL +   K+ VIE D+ 
Sbjct: 17  KKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +++    L I+  D L+VDF +  +   PIR++ NLPYNI + +LF+ +   
Sbjct: 76  LIAPLT-AAAEPLGELTIVHRDVLRVDFTELAD-GQPIRLVGNLPYNISSPILFHALEHA 133

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                   +  + QKEV +R+ A   S  +GRLSV+     + T +F + P  F P PKV
Sbjct: 134 A---VIRDMHFMLQKEVVDRMAAGPGSKVFGRLSVMLQAYCEVTSLFVVPPGAFRPPPKV 190

Query: 202 TSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            S V+  +P  +P    +   K+   + + AFG+RRKTLR +L  +        AG+  +
Sbjct: 191 DSAVVRLVPR-DPATINIRDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFAAAGVRPD 249

Query: 259 LRAENLSIEDFCRITN 274
            RAE L + +F  + N
Sbjct: 250 ARAEQLDVAEFIALAN 265


>gi|307701523|ref|ZP_07638541.1| dimethyladenosine transferase [Mobiluncus mulieris FB024-16]
 gi|307613315|gb|EFN92566.1| dimethyladenosine transferase [Mobiluncus mulieris FB024-16]
          Length = 303

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 143/299 (47%), Gaps = 28/299 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT    +  ++ +     I P K  GQNF+ D   +++IA  +       V+EIG G G+
Sbjct: 1   MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSSAEVVLEIGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVDFEKFFNISS 117
           LT  LL  GAR VI +E D +    L      H   +E   +   DAL +D        +
Sbjct: 61  LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119

Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+ ++ANLPYN+ T +L + +      P      ++ Q EV +R+ A+     YG 
Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF---IPHLNPI-----PCCLESLKKI 225
            SV   W   A   F +S  VF P P V STV+ F    P L P         +E+L++ 
Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236

Query: 226 TQE----AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
           + E    AFG RRKTLRQSL RL G       LL +AGI+  LRAENL + DF  +  +
Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295


>gi|62258206|gb|AAX77774.1| unknown protein [synthetic construct]
          Length = 297

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 140/271 (51%), Gaps = 9/271 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL+  +  V V
Sbjct: 28  QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSV 86

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           +E D      L   + Q      I   D LK D     N S+  I++I NLPYNI + +L
Sbjct: 87  VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 145

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS   GRLSV+  +    +M+  I P V
Sbjct: 146 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 202

Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F+P PKV S ++   P +   +       ++I +++F +RRKTL  +LK +  E  +  +
Sbjct: 203 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 262

Query: 254 G--IETNLRAENLSIEDFCRITNILTDNQDI 282
              ++TNLRAENLS+ DF  + N L+   D+
Sbjct: 263 TLPVDTNLRAENLSVGDFVSLANFLSYPYDV 293


>gi|321476312|gb|EFX87273.1| hypothetical protein DAPPUDRAFT_307097 [Daphnia pulex]
          Length = 332

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 143/287 (49%), Gaps = 23/287 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ +L+ Y++   K + QNFL+D  +  K+  ++G +    V E+G G G+LT+++L+ 
Sbjct: 15  AVRDLLNLYRLQAVKQLSQNFLIDPKLTSKLVSAAGKITNGYVCEVGPGAGSLTRVILSR 74

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---------I 119
              K++V+EKD++F P L+ ++    +R+ I+  D L  +    F   S          I
Sbjct: 75  NVNKLVVVEKDKRFQPPLEMLAEASGDRMSIVWGDVLSHNLTNAFPEESKRDWTDQPPNI 134

Query: 120 RIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+NI T L+  W+ A     + W      +TL FQKEV ER+ A+  S    RL
Sbjct: 135 HIIGNLPFNIATPLIIRWLKAISERSNAWVHGRVPMTLTFQKEVAERMVAKIGSRERCRL 194

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+          F I    F P P V   V+HF P   P I    + ++K+ +  F  R
Sbjct: 195 SVMVQHLCYVEHKFTIPGKAFVPKPNVDVGVVHFTPLATPKIQAPFKLVEKVARNTFSFR 254

Query: 234 RKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRI 272
           +K  R+ L+ L            LL  A ++  LR   LSIE+F RI
Sbjct: 255 QKYCRRGLETLFPSSMRDEQTHKLLQLADVDGTLRPFELSIEEFNRI 301


>gi|206900710|ref|YP_002251201.1| dimethyladenosine transferase [Dictyoglomus thermophilum H-6-12]
 gi|206739813|gb|ACI18871.1| dimethyladenosine transferase [Dictyoglomus thermophilum H-6-12]
          Length = 279

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 153/279 (54%), Gaps = 15/279 (5%)

Query: 3   MNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           MN  S S L  IL    I  KK +GQNFL+D NILKKI ++       T++E+G G G L
Sbjct: 1   MNLTSRSELIEILQKNNIFLKKSLGQNFLVDKNILKKIIDALEISKEDTILEVGCGVGTL 60

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           T + L   +++VI +E D++F PIL+++   +PN  EII +D +K+D  K   ++ P ++
Sbjct: 61  T-LELAKRSKRVIGVEIDKRFKPILENLLKDYPNT-EIIFEDIMKIDLSKI--VTPPYKL 116

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPY I    L  +       P+   + ++ QKE+ ER+T+   +  Y  LS+L    
Sbjct: 117 AGNLPYYISGSFLGEYFQKG---PYASLMVIMLQKEMAERLTSSPGNKKYSPLSILLHIT 173

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
               ++  + P  FFP+P+V S ++     P L+ I    E   K+ +E+F +RRK L  
Sbjct: 174 YSYEVISKVPPSCFFPAPEVESVILRLKLNPKLDKIHNK-ELFFKLLKESFSQRRKFLLN 232

Query: 240 SLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITN 274
           +L+R   E     L  +  I++ +RAE+LS ED+  ++N
Sbjct: 233 NLQRAFPEIDWKTLFTELNIDSKIRAEDLSPEDYITLSN 271


>gi|227876332|ref|ZP_03994445.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35243]
 gi|269976092|ref|ZP_06183091.1| dimethyladenosine transferase [Mobiluncus mulieris 28-1]
 gi|227843105|gb|EEJ53301.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35243]
 gi|269935685|gb|EEZ92220.1| dimethyladenosine transferase [Mobiluncus mulieris 28-1]
          Length = 303

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 143/299 (47%), Gaps = 28/299 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT    +  ++ +     I P K  GQNF+ D   +++IA  +       V+EIG G G+
Sbjct: 1   MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSSAEVVLEIGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVDFEKFFNISS 117
           LT  LL  GAR VI +E D +    L      H   +E   +   DAL +D        +
Sbjct: 61  LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119

Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+ ++ANLPYN+ T +L + +      P      ++ Q EV +R+ A+     YG 
Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF---IPHLNPI-----PCCLESLKKI 225
            SV   W   A   F +S  VF P P V STV+ F    P L P         +E+L++ 
Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236

Query: 226 TQE----AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
           + E    AFG RRKTLRQSL RL G       LL +AGI+  LRAENL + DF  +  +
Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295


>gi|226192683|pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
           Methyltransferase (Ksga) In Space Group P21212
 gi|226192684|pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
           Methyltransferase (Ksga) In Space Group P21212
          Length = 271

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/276 (35%), Positives = 141/276 (51%), Gaps = 23/276 (8%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S++ +L  + +   K  GQNFL+    L++I E++    G  V E+G G G LT+ LL 
Sbjct: 8   QSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLE 66

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GA +V  IEKD +  P+L++  S  P RL  +  DAL   +E+    S    ++ANLPY
Sbjct: 67  AGA-EVTAIEKDLRLRPVLEETLSGLPVRL--VFQDALLYPWEEVPQGSL---LVANLPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I T L+   +    +      L  L QKEV ER TA+  +P YG L++       A  +
Sbjct: 121 HIATPLVTRLLKTGRF----ARLVFLVQKEVAERXTARPKTPAYGVLTLRVAHHAVAERL 176

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLG 245
           FD+ P  FFP PKV S+++   P        L+   L ++ + AFGKRRKTL  +L   G
Sbjct: 177 FDLPPGAFFPPPKVWSSLVRLTPT-----GALDDPGLFRLVEAAFGKRRKTLLNALAAAG 231

Query: 246 G-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 E  L   G+   +RAE L +E F R+   L
Sbjct: 232 YPKARVEEALRALGLPPRVRAEELDLEAFRRLREGL 267


>gi|27262374|gb|AAN87468.1| Dimethyladenosine transferase [Heliobacillus mobilis]
          Length = 283

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 149/285 (52%), Gaps = 20/285 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S  L+  ++ Y I  KK +GQNFL D   + +I +++    G  V+EIG GP  LT  L 
Sbjct: 2   SKELRQRIAQYGIRAKKGLGQNFLSDSEYVYRIVDAAELSSGDVVVEIGPGPATLTPHLA 61

Query: 67  -TLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRI 121
             +G   KV+ IE D+   P+L D+  ++P  +EI+  DALKVD++     +    P  +
Sbjct: 62  EAVGPEGKVLAIEVDESLRPLLMDLCREYPQ-VEILWQDALKVDYDAVTAPYRGDKPFTL 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++   +           + ++ QKEV +R+ A+  +  YG LSV   + 
Sbjct: 121 VANLPYYITTPIMMGLLEGRFN---LSHMVIMVQKEVADRMLARAGTKDYGALSVAVQYH 177

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLR 238
            +  ++  + P  F P PKV+S V+       P P  +   ++  ++ + AF +RRKTL 
Sbjct: 178 CEVKLVTKVPPGAFIPPPKVSSAVVRLNRRRQP-PVHVFDEKAFFRVVRAAFNQRRKTLL 236

Query: 239 QSLKRLGGE-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
            +L  LG E         L QAGI+   R E L++++F R+T+ L
Sbjct: 237 NALGGLGLEMTKTEMSERLAQAGIDPGRRGETLNLDEFARVTDAL 281


>gi|308171933|ref|YP_003918638.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307604797|emb|CBI41168.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
           amyloliquefaciens DSM 7]
 gi|328551743|gb|AEB22235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Bacillus amyloliquefaciens TA208]
 gi|328910003|gb|AEB61599.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
           amyloliquefaciens LL3]
          Length = 293

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 150/293 (51%), Gaps = 24/293 (8%)

Query: 3   MNNKSHSL----KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           MNNK  +     K IL  Y    KK +GQNFL+D NIL +I + +   D   VIEIG G 
Sbjct: 1   MNNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGI 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFN 114
           G LT+ L    A+KV+  E DQ+  PIL D  S + N + II  D LK D     E+ F 
Sbjct: 61  GALTEQLAK-RAKKVVAFEIDQRLLPILNDTLSPYDN-VTIIHHDVLKADVKSVIEEQFQ 118

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
               I + ANLPY + T ++   +  +  P   + + ++ QKEV ER+ A  +S  YG L
Sbjct: 119 DCDEIMVTANLPYYVTTPIIMKLLE-EHLP--LKGIVVMLQKEVAERMAADPSSKEYGSL 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGK 232
           S+   + T+A  +  +   VF P P V S VI  +    P +    ES   ++ + +F +
Sbjct: 176 SIAVQFYTEAKTVMTVPKTVFVPQPNVDSAVIRLLLRDGPAVDVDNESFFFQLIKASFAQ 235

Query: 233 RRKTLRQSLKRL--GG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RRKTL  +L     GG       E +L +  I+   R E+LSIE+F  ++N L
Sbjct: 236 RRKTLLNNLVNNLPGGKEKKPQIEEVLQETNIDGKRRGESLSIEEFALLSNGL 288


>gi|317132589|ref|YP_004091903.1| dimethyladenosine transferase [Ethanoligenens harbinense YUAN-3]
 gi|315470568|gb|ADU27172.1| dimethyladenosine transferase [Ethanoligenens harbinense YUAN-3]
          Length = 284

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 146/290 (50%), Gaps = 17/290 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT       +K +L+ +     K +GQNFL++ ++  ++A   G+ +   V+EIG G G 
Sbjct: 1   MTDLANPAQIKALLARHGFHFSKALGQNFLINPSVCPRMAALCGAEEAAGVLEIGPGIGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP 118
           LT  L    A+KV+ +E D +  P+L +   Q  N + ++Q DA++ D           P
Sbjct: 61  LTAEL-ARRAKKVVALELDTRLLPVLAETLDQFSN-VRVVQGDAMEADLAALIREEFGGP 118

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           + + ANLPY I + LL   +  ++  P   ++T++ QKE   RI A   S   G +S+  
Sbjct: 119 VAVCANLPYYITSPLLMRLL--ESHLPVT-AVTVMVQKEAAARICAAPGSRDTGAVSLAV 175

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRK 235
            +     ++FD+S   F P P+V S VI    H  P P  + +   L ++ + AF +RRK
Sbjct: 176 RYYASPRVLFDVSAGSFLPRPQVDSCVIRLDLHQEP-PVAVRNEALLFRVVRAAFAQRRK 234

Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            LR +L    G         L +AG++ +LR E L++ DF R+ + L + 
Sbjct: 235 MLRSALPAGLGLPRERVAAALRKAGVDESLRGERLTLADFARVADALAEE 284


>gi|253576891|ref|ZP_04854216.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843758|gb|EES71781.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 298

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 144/280 (51%), Gaps = 19/280 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+  +    KK +GQNFL+D NIL KI  ++        +EIG G G LT+ L    A
Sbjct: 14  KEIIQRHGFSFKKSLGQNFLIDQNILGKIVAAAELEKTQGALEIGPGIGALTEKLAQ-EA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126
            KV  +E DQ+  PIL+++   +P+ + +I  D LK+D +  F       S + ++ANLP
Sbjct: 73  GKVAAVEIDQRLLPILQEVLEPYPH-VHVIHGDVLKLDLKALFAAEFSGVSGVSVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +  P   + + ++ QKEV ER+ A      YG LS+   + +   M
Sbjct: 132 YYVTTPIMMKLLE-EKLP--LKHIVVMIQKEVAERMAATPGGKDYGSLSIAVQYYSTPEM 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK-- 242
           +  +   VF P P V S VI       P     +     ++ Q +F +RRKT+  +LK  
Sbjct: 189 ICTVPHSVFIPQPNVESAVIRLTVREKPAVAVQDEAFFFEVVQASFAQRRKTISNNLKSR 248

Query: 243 ------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 R   E LL +AGI+ + RAE LS+++F ++++ L
Sbjct: 249 FFPKEGRERLEQLLEEAGIQPSRRAETLSLDEFAKLSDTL 288


>gi|118600900|sp|Q2YVV2|RSMA_STAAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 297

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 145/278 (52%), Gaps = 20/278 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    
Sbjct: 13  MRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARH 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANL 125
           A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANL
Sbjct: 72  AKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ +
Sbjct: 131 PYYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETS 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKR 243
            +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + + 
Sbjct: 188 KVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQN 247

Query: 244 LGGENLLH---------QAGIETNLRAENLSIEDFCRI 272
              +   H         QAGI+   R E LSI+DF ++
Sbjct: 248 YFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 285


>gi|27364120|ref|NP_759648.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio vulnificus CMCP6]
 gi|37678662|ref|NP_933271.1| dimethyladenosine transferase [Vibrio vulnificus YJ016]
 gi|320157505|ref|YP_004189884.1| dimethyladenosine transferase [Vibrio vulnificus MO6-24/O]
 gi|31340188|sp|Q8DED2|RSMA_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900560|sp|Q7MP86|RSMA_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|27360238|gb|AAO09175.1| dimethyladenosine transferase [Vibrio vulnificus CMCP6]
 gi|37197402|dbj|BAC93242.1| dimethyladenosine transferase [Vibrio vulnificus YJ016]
 gi|319932817|gb|ADV87681.1| dimethyladenosine transferase [Vibrio vulnificus MO6-24/O]
          Length = 268

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 137/264 (51%), Gaps = 13/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+     HP   ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLR----THPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P P   L+ L+++ +E F +RRKT+R   K L  E +L + G+ 
Sbjct: 184 PKVDSAVVRLVPYETLPHPANNLQWLERVCREGFNQRRKTVRNCYKSLMSEQVLEELGVN 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
             +R ENL+++ F  + N L  N 
Sbjct: 244 PGMRPENLTLQQFVAMANWLDANH 267


>gi|77361550|ref|YP_341125.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis
           TAC125]
 gi|119365048|sp|Q3IFD1|RSMA_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|76876461|emb|CAI87683.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           Kasugamycin dimethyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 268

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/269 (36%), Positives = 138/269 (51%), Gaps = 23/269 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+ KI  +        ++EIG G G +T+ +  L    + V+E D  
Sbjct: 12  RKRFGQNFLFDDMIIGKIVSAIDPKPEDNLVEIGPGLGAITEPVAELSGH-LTVVELD-- 68

Query: 82  FFPILKDISS---QHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
                KD++    +HP    +L + Q DA+  DF         +++  NLPYNI T LLF
Sbjct: 69  -----KDLAQRLIEHPFLGPKLTVNQGDAMTFDFASLVRDDKKLKVFGNLPYNISTPLLF 123

Query: 136 NWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           +    AD      E +  + QKEV +R+ A   S  +GRLSV+T +   A  + ++ P  
Sbjct: 124 HLFEFADNI----EHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVIEVPPEC 179

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGENLLH 251
           F P+PKV S VI  IP   P     +S+K    +  EAF +RRKTLR SL  L   + L 
Sbjct: 180 FKPAPKVDSAVIRLIPK-KPEQRTAKSVKILNNVCLEAFNQRRKTLRNSLSNLLTADELT 238

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280
             GI+  LRAE LS++ F  I N + DN+
Sbjct: 239 SIGIDVTLRAERLSLQQFIDIANWIYDNK 267


>gi|323342302|ref|ZP_08082534.1| dimethyladenosine transferase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463414|gb|EFY08608.1| dimethyladenosine transferase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 270

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 145/279 (51%), Gaps = 17/279 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N S S++ +L  Y+   KK+ GQNF++D ++++ IA  SG+  G TV+EIG G G L
Sbjct: 3   TIANYSVSME-LLRRYERRAKKHFGQNFIIDPSVVRNIASQSGA--GGTVLEIGPGLGAL 59

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           TQ L      KVI  E D     IL +   ++ N + +I  D LK D   +   + PI +
Sbjct: 60  TQQLAE-TYDKVIAYEIDPHMVEILNETLEEYDN-VNVIHQDFLKADLSMY---TEPITV 114

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
            ANLPY I T +LF  +  D       ++T++ QKE+ +R+ A   +  Y  LS+   + 
Sbjct: 115 CANLPYYITTPILFRLMELDIV-----AMTIMVQKEIADRLGASPQTKDYSSLSIQMQYY 169

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
                +  +S   F P P V S VI   P    +P   ++  +  ++ F  RRKTL  +L
Sbjct: 170 FDVKTVLKVSKESFHPRPGVESIVIKLTPKHQTMPYDEKTFFEFVKKCFQFRRKTLVNNL 229

Query: 242 KRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           K +  +     +L   G+ETN+RA+ L+ +D+ R+   L
Sbjct: 230 KTIDKDVDYATVLESLGLETNIRADYLTFDDYIRLYGAL 268


>gi|258452826|ref|ZP_05700821.1| dimethyladenosine transferase [Staphylococcus aureus A5948]
 gi|257859512|gb|EEV82365.1| dimethyladenosine transferase [Staphylococcus aureus A5948]
          Length = 297

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    A
Sbjct: 14  RALLDKYGFNLKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANLP
Sbjct: 73  KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ + 
Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         QAGI+   R E LSI+DF ++
Sbjct: 249 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 285


>gi|171779142|ref|ZP_02920113.1| hypothetical protein STRINF_00988 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282198|gb|EDT47625.1| hypothetical protein STRINF_00988 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 290

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 146/283 (51%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N +++I +D LK D +    +F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ QKEV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++       P+    +     ++++  F  RRKTL  +L   
Sbjct: 185 AFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKIGFVHRRKTLWNNLTSH 244

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G         E  L  A I+ ++R E LSI +F ++ + L +
Sbjct: 245 FGKADEIKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287


>gi|331092538|ref|ZP_08341360.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330400759|gb|EGG80362.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 292

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 149/286 (52%), Gaps = 19/286 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  ++++ IL  Y+   +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 7   TLGNPQNTIE-ILQKYQFSFQKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTM 65

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118
           TQ L +  AR+V+ +E D+   PIL D  S   N + II +D LKVD        N   P
Sbjct: 66  TQYLAS-AAREVVAVEIDKALIPILSDTLSGFDN-VTIINNDVLKVDIGALAQEHNNGRP 123

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     ++      ES+T++ QKEV ER+     +  YG LS+  
Sbjct: 124 IKVVANLPYYITTPIIMGLFESNVP---IESITVMVQKEVAERMQVGPGTKDYGALSLAV 180

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236
            +  K  ++ ++ P+ F P PKV S VI    H  P    ++   + KI + +F +RRKT
Sbjct: 181 QYYAKPYIVANVPPNCFMPRPKVASAVIRLERHKEPPVSVVDEKLMFKIIRASFNQRRKT 240

Query: 237 LRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITN 274
           L   L      +L        + + G    +R E L++++F  +++
Sbjct: 241 LANGLNNSPEIHLPKDVITEAIKELGKGAGVRGEVLTLQEFATLSD 286


>gi|153834241|ref|ZP_01986908.1| dimethyladenosine transferase [Vibrio harveyi HY01]
 gi|148869429|gb|EDL68435.1| dimethyladenosine transferase [Vibrio harveyi HY01]
          Length = 269

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 136/263 (51%), Gaps = 13/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHKD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P P      L+++ +E F +RRKT+R   K L    +L + G+ 
Sbjct: 184 PKVDSAVVRLVPYEELPHPAKDFRLLERVCREGFNQRRKTVRNCYKALISAEVLEELGVN 243

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            ++R ENL+++ F  + N L DN
Sbjct: 244 PSMRPENLTLQQFVAMANWLADN 266


>gi|332534338|ref|ZP_08410181.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036248|gb|EGI72721.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 268

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/268 (35%), Positives = 137/268 (51%), Gaps = 21/268 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D +I+ KI  +        ++EIG G G +T+ +  L    + V+E D  
Sbjct: 12  RKRFGQNFLFDESIIDKIVSAIDPKPEDNLVEIGPGLGAITEPVADLSGH-LTVVELD-- 68

Query: 82  FFPILKDISS---QHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
                KD++    +HP    +L + Q DA+  DF         +++  NLPYNI T LLF
Sbjct: 69  -----KDLAQRLIEHPFLGPKLTVNQGDAMTFDFASLVRDDKKLKVFGNLPYNISTPLLF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E +  + QKEV +R+ A   S  +GRLSV+T +   A  + ++ P  F
Sbjct: 124 HLFE---FSDHIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVVEVPPECF 180

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P+PKV S VI  IP   P     +S+K    +  EAF +RRKTLR SL  L     L  
Sbjct: 181 KPAPKVDSAVIRLIPK-KPEQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTAEELTS 239

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280
            GI+  LRAE LS++ F  I N + DN+
Sbjct: 240 IGIDITLRAERLSLQQFIDIANWIYDNK 267


>gi|254496674|ref|ZP_05109537.1| dimethyladenosine transferase [Legionella drancourtii LLAP12]
 gi|254354102|gb|EET12774.1| dimethyladenosine transferase [Legionella drancourtii LLAP12]
          Length = 256

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 136/260 (52%), Gaps = 10/260 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQNFL   +++  I  S        ++EIG G G LT+ LL    +++  IE D 
Sbjct: 5   PRKRFGQNFLQSRHVIDDILRSINPQLEDNLLEIGPGLGALTEPLLR-RLKRMTAIEIDT 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L ++      +L +I  DAL VD+ +F    + +R+I NLPYNI T LL + +  
Sbjct: 64  DLQKYLSELPIAQ-GKLNLIAADALTVDYSQF---GAKLRVIGNLPYNISTPLLIHLLR- 118

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             + PF E +  + QKEV ER+ AQ  +  YGRL+V+  +      +F + P  F P PK
Sbjct: 119 --FAPFIEDMHFMLQKEVVERMAAQPGTKDYGRLTVMLQYHCDVDYLFAVPPEAFEPRPK 176

Query: 201 VTSTVIHFIPH-LNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +P+  +P     +E L+++   AF  RRKTL  +LK +     L   GI+  
Sbjct: 177 VDSAVVRLVPYEKSPFESVAVEQLERLVASAFAMRRKTLNNNLKGIISAEQLLDLGIDGG 236

Query: 259 LRAENLSIEDFCRITNILTD 278
            R E +S+ ++ ++   +++
Sbjct: 237 RRPEQISVAEYVQLAKFVSN 256


>gi|315639886|ref|ZP_07895017.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952]
 gi|315484311|gb|EFU74776.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952]
          Length = 295

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 154/287 (53%), Gaps = 23/287 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69
           + IL+ +    KK +GQNFL D NIL+ I  ++G +D  T VIE+G G G LT+  L   
Sbjct: 14  REILAKHGFTFKKSLGQNFLTDPNILRNIV-AAGDIDQDTNVIEVGPGIGALTE-YLARA 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124
           A +V+  E D +  P+L D  S + N + +I  D L+        E+F N   P++++AN
Sbjct: 72  AHQVVAFEIDDRLLPVLADTLSPYDN-VSVIHQDILQARIDHVLQEQFTNDGRPVKVVAN 130

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T ++ +++ +         + ++ QKEV +RI+A+  +  YG LS+   +  +A
Sbjct: 131 LPYYITTPIMMHFLDSKVE---IAEMIVMMQKEVADRISAKPGTKAYGSLSIAVQYYMEA 187

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLK 242
           ++ F +   VF P P V S ++       P    +  ++   +T+ AF +RRKT   +L+
Sbjct: 188 SVAFIVPKTVFVPQPNVDSAILKLTRRPQPAVDVINEKAFFGLTKAAFLQRRKTFWNNLQ 247

Query: 243 RLGGENLLHQAGIETNL---------RAENLSIEDFCRITNILTDNQ 280
              G++   +A ++ +L         R E LS+E+F R++N++  N+
Sbjct: 248 SYYGKDEATKAWLQQSLKEAEIDPIRRGETLSLEEFARLSNVMEANK 294


>gi|212693622|ref|ZP_03301750.1| hypothetical protein BACDOR_03140 [Bacteroides dorei DSM 17855]
 gi|237708782|ref|ZP_04539263.1| dimethyladenosine transferase [Bacteroides sp. 9_1_42FAA]
 gi|237724220|ref|ZP_04554701.1| dimethyladenosine transferase [Bacteroides sp. D4]
 gi|265755952|ref|ZP_06090419.1| dimethyladenosine transferase [Bacteroides sp. 3_1_33FAA]
 gi|212663875|gb|EEB24449.1| hypothetical protein BACDOR_03140 [Bacteroides dorei DSM 17855]
 gi|229437408|gb|EEO47485.1| dimethyladenosine transferase [Bacteroides dorei 5_1_36/D4]
 gi|229457208|gb|EEO62929.1| dimethyladenosine transferase [Bacteroides sp. 9_1_42FAA]
 gi|263234030|gb|EEZ19631.1| dimethyladenosine transferase [Bacteroides sp. 3_1_33FAA]
          Length = 280

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 99/263 (37%), Positives = 136/263 (51%), Gaps = 24/263 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           PKK++GQ+FL DL+I K IA++      + ++E+G G G LTQ ++    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQ-KNRAVKVVELDY 64

Query: 80  ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                 ++ FP L+D          II+DD LK++ EK F+   P  +  N PYNI +++
Sbjct: 65  ESVTYLRENFPALED---------NIIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQI 114

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     T + QKEV ERI A   S  YG LS+L     K   +F +  H
Sbjct: 115 FFKMLDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEH 171

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR-LGGENLLH 251
           VF P PKV S VI    +      C E L K I +  F +RRKTLR S+   L  EN L 
Sbjct: 172 VFNPPPKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPL- 230

Query: 252 QAGIETNLRAENLSIEDFCRITN 274
            A +  N R E LS+ +F  +TN
Sbjct: 231 SADLIFNKRPEQLSVSEFIELTN 253


>gi|295094395|emb|CBK83486.1| dimethyladenosine transferase [Coprococcus sp. ART55/1]
          Length = 287

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 152/290 (52%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           ++N   +++TI   Y+   +K  GQNFL+D +++ KI  ++       V+EIG G G +T
Sbjct: 4   LSNPQVTIETI-KKYEFAFQKKFGQNFLIDAHVINKIISAADITKDDCVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    A +V+ +E D+   PIL +  +++ N + II DD LKVD  K     N   PI
Sbjct: 63  QYLAE-SAGQVVAVEIDKNLLPILDETLAEYDN-VTIINDDILKVDINKIVEERNGGRPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++          P   S+T++ QKEV +R+     +  YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFEKHV--PLL-SVTVMVQKEVADRMQVGPGTKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKT 236
           +  +  ++ ++ P+ F P P V S VI    +  P P  ++    + ++ + +F +RRKT
Sbjct: 178 YYAEPYIVANVPPNCFIPRPGVGSAVIRLNRYQEP-PVKVKDEQLMFRLIRASFNQRRKT 236

Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L+  +   G            L   GI  N+R E+LS+ +F  +++ILTD
Sbjct: 237 LQNGIANSGELSFTKEQIAKALESLGISANIRGESLSLAEFAALSDILTD 286


>gi|321313712|ref|YP_004205999.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Bacillus subtilis BSn5]
 gi|320019986|gb|ADV94972.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Bacillus subtilis BSn5]
          Length = 292

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 144/279 (51%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL +I + +   +   VIEIG G G LT+ L    A
Sbjct: 12  KEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAK-RA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           +KV+  E DQ+  PILKD  S + N + +I  D LK D     E+ F     I ++ANLP
Sbjct: 71  KKVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +  P   + + ++ QKEV ER+ A  +S  YG LS+   + T+A  
Sbjct: 130 YYVTTPIIMKLLE-EHLP--LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAKT 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTL------- 237
           +  +   VF P P V S VI  +    P +    ES   ++ + +F +RRKTL       
Sbjct: 187 VMIVPKTVFVPQPNVDSAVIRLVLRDGPAVDVENESFFFQLIKASFAQRRKTLLNNLVNN 246

Query: 238 --RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
                 ++   E +L +  I+   R E+LSIE+F  ++N
Sbjct: 247 LPEGKAQKSTIEQVLEETNIDGKRRGESLSIEEFAALSN 285


>gi|282931722|ref|ZP_06337210.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1]
 gi|297205158|ref|ZP_06922554.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16]
 gi|281304165|gb|EFA96279.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1]
 gi|297149736|gb|EFH30033.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16]
          Length = 293

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 20/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I++ Y    KK +GQNFL+ LN +  I +++       V+EIG G G+LT+ +L  GA
Sbjct: 14  KAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIKSDDQVLEIGPGIGSLTEQMLLRGA 73

Query: 71  RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIR 120
            KV+  E DQ    IL     + + ++H  +  +++  D LK DF++    FF+++ PI+
Sbjct: 74  -KVLAYEIDQDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKPIK 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     +ESLTL+ QKEV ER+ A   +  YG L++    
Sbjct: 133 VVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQT 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQ 239
           +    M   +    F P PKV S V+   P    +     E+ + + +  F +RRKTL  
Sbjct: 190 QMAVKMAVMVDHTNFNPQPKVDSAVVVLKPLAKKVDVGDTENFEHVVKMCFSQRRKTLNN 249

Query: 240 SLKRL--GGE---NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +LK L   GE   NLL    +    R E L+I  F  +   L
Sbjct: 250 NLKSLVKNGEERKNLLQMLDLPEKARPEELTIGQFISLAKAL 291


>gi|257794266|ref|ZP_05643245.1| dimethyladenosine transferase [Staphylococcus aureus A9781]
 gi|258407216|ref|ZP_05680361.1| dimethyladenosine transferase [Staphylococcus aureus A9763]
 gi|258420817|ref|ZP_05683753.1| dimethyladenosine transferase [Staphylococcus aureus A9719]
 gi|258424472|ref|ZP_05687351.1| dimethyladenosine transferase [Staphylococcus aureus A9635]
 gi|257788238|gb|EEV26578.1| dimethyladenosine transferase [Staphylococcus aureus A9781]
 gi|257841174|gb|EEV65623.1| dimethyladenosine transferase [Staphylococcus aureus A9763]
 gi|257843209|gb|EEV67622.1| dimethyladenosine transferase [Staphylococcus aureus A9719]
 gi|257845341|gb|EEV69376.1| dimethyladenosine transferase [Staphylococcus aureus A9635]
          Length = 299

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    A
Sbjct: 16  RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 74

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANLP
Sbjct: 75  KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 133

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ + 
Sbjct: 134 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 190

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 191 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 250

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         QAGI+   R E LSI+DF ++
Sbjct: 251 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 287


>gi|241668930|ref|ZP_04756508.1| dimethyladenosine transferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877462|ref|ZP_05250172.1| dimethyladenosine transferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843483|gb|EET21897.1| dimethyladenosine transferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 262

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 140/263 (53%), Gaps = 9/263 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ +L   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDIVLEIGPGLGALTRYILKC-SDNVNV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134
           +E D      L   + Q     ++  +D LK D +    +    ++++ NLPYNI + +L
Sbjct: 61  VEFDASVIDTLLQ-NCQKYGEPKVFNEDFLKFDLDIVRADSQQKLKLVGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +Q NS  YGRLSV+  +    +M+ +I P V
Sbjct: 120 FKVIEQSDK---IIDAHFMLQKEVVERIISQPNSKTYGRLSVILQYHFDCSMILNIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F+P PKV S ++   P ++ +        + I +++F +RRKTL  +LK +  E  ++ +
Sbjct: 177 FYPQPKVDSAILRLKPKVDKLVVNDYVFFENIVKQSFAQRRKTLHNNLKGILKEFDINPS 236

Query: 254 G--IETNLRAENLSIEDFCRITN 274
              ++T LRAENLS+EDF  + N
Sbjct: 237 ALPVDTKLRAENLSVEDFVSLAN 259


>gi|78043122|ref|YP_361409.1| dimethyladenosine transferase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|119365012|sp|Q3A8X5|RSMA_CARHZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|77995237|gb|ABB14136.1| dimethyladenosine transferase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 291

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 148/283 (52%), Gaps = 23/283 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +LK IL+ + +     +GQ+FL D  IL KI E +       V+EIG G G LT+ LL  
Sbjct: 8   TLKEILARHNLTLSHGLGQHFLTDFGILAKIVEKAEITKDDAVLEIGPGAGVLTR-LLAQ 66

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK---------FFNISSPI 119
            A+ V+ IE D++  P+L + +    N + ++  DA +++F++         F     P 
Sbjct: 67  AAKYVVAIEIDKKLLPVLAETTGDLGNVV-VVNADAREINFDRVMAEQTGGEFGFEGKPY 125

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            I+ANLPY   + L+F             S+TL+ QKEV ERITA+  S  YG LSV   
Sbjct: 126 LIVANLPYYATSPLIFKVFEEGYK---VSSMTLMMQKEVAERITAKPGSKIYGSLSVACQ 182

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTL 237
           + ++  ++  +   VFFP P+V S V+ F    N +    E LK  +I + AF  RRKT+
Sbjct: 183 YFSEPRIVLKVPRTVFFPPPEVESAVVRFTLKENSL-TSEERLKFFQIVRAAFATRRKTI 241

Query: 238 RQS------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +S      LKR   E +L + GI+ +LRAE +  E F R++ 
Sbjct: 242 AKSLSGALNLKRNYVEEVLLKVGIKPDLRAEQIPPESFYRLSQ 284


>gi|306817223|ref|ZP_07450970.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35239]
 gi|304650025|gb|EFM47303.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35239]
          Length = 303

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 143/299 (47%), Gaps = 28/299 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT    +  ++ +     I P K  GQNF+ D   +++IA  +       V+EIG G G+
Sbjct: 1   MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSPAEVVLEIGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVDFEKFFNISS 117
           LT  LL  GAR VI +E D +    L      H   +E   +   DAL +D        +
Sbjct: 61  LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119

Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+ ++ANLPYN+ T +L + +      P      ++ Q EV +R+ A+     YG 
Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF---IPHLNPI-----PCCLESLKKI 225
            SV   W   A   F +S  VF P P V STV+ F    P L P         +E+L++ 
Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236

Query: 226 TQE----AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
           + E    AFG RRKTLRQSL RL G       LL +AGI+  LRAENL + DF  +  +
Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295


>gi|255311159|ref|ZP_05353729.1| dimethyladenosine transferase [Chlamydia trachomatis 6276]
 gi|255317460|ref|ZP_05358706.1| dimethyladenosine transferase [Chlamydia trachomatis 6276s]
          Length = 277

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/265 (36%), Positives = 140/265 (52%), Gaps = 17/265 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++LL+ GA  VI +EKD  
Sbjct: 21  KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139
             P+ +   SQ P  +EI   DA K       +       RI+ANLPY+I T LL  +  
Sbjct: 78  --PMFEGSLSQLPMDIEIT--DACKYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P  W+++T++ Q EV  RITA+     YG L+V   +       F +SP+ F+P P
Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKP 191

Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253
            V S V+H   H         +E    +T+ AFG+RRK L  SLK L  ++    +L Q 
Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G     R E + +E++ +I ++L D
Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|237802779|ref|YP_002887973.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274013|emb|CAX10806.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT]
          Length = 277

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/265 (36%), Positives = 140/265 (52%), Gaps = 17/265 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++LL+ GA  VI +EKD  
Sbjct: 21  KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139
             P+ ++  SQ P  +EI   DA K       +       RI+ANLPY+I T LL  +  
Sbjct: 78  --PMFEESLSQLPMDIEIT--DACKYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P  W+++T++ Q EV  RITA+     YG L+V           F +SP+ F+P P
Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSLFADVQYAFKVSPNCFYPKP 191

Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253
            V S V+H   H         +E    +T+ AFG+RRK L  SLK L  ++    +L Q 
Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G     R E + +E++ +I ++L D
Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|291537682|emb|CBL10794.1| dimethyladenosine transferase [Roseburia intestinalis M50/1]
 gi|291537815|emb|CBL10926.1| dimethyladenosine transferase [Roseburia intestinalis XB6B4]
          Length = 290

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 145/283 (51%), Gaps = 20/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            +L  Y    +K  GQNFL+D ++L+KI E++G      V+EIG G G +TQ L    AR
Sbjct: 12  AVLQKYHFNFQKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTMTQYLCE-NAR 70

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128
           +V  +E D    PIL+D  S + N + +I  D LK+D  K     N   PI+++ANLPY 
Sbjct: 71  EVTAVEIDTNLIPILEDTLSAYDN-VTVINQDILKLDIAKLAMERNGGKPIKVVANLPYY 129

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++     +       +S+T++ QKEV +R+     +  YG LS+   +  K  ++ 
Sbjct: 130 ITTPIIMGLFESHVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLAVQFYAKPQIVA 186

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK--- 242
           ++ P+ F P P V S VI    H   +P  ++  K    I + +F +RRKTL   L    
Sbjct: 187 NVPPNCFMPRPNVGSAVIRLTRH-EEVPVQVDDEKLMFHIIRASFNQRRKTLANGLSNAP 245

Query: 243 --RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
              L  E +   + + G    +R E L++E F  ++NI+ + Q
Sbjct: 246 QVHLSKEEIQECIAELGEPLTIRGEALTLEQFAALSNIIGNRQ 288


>gi|256851971|ref|ZP_05557358.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN]
 gi|260661459|ref|ZP_05862372.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN]
 gi|256615383|gb|EEU20573.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN]
 gi|260547914|gb|EEX23891.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN]
          Length = 297

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 20/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I++ Y    KK +GQNFL+ LN +  I +++       V+EIG G G+LT+ +L  GA
Sbjct: 18  KAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIKSDDQVLEIGPGIGSLTEQMLLRGA 77

Query: 71  RKVIVIEKDQQFFPIL-----KDISSQH-PNRLEIIQDDALKVDFEK----FFNISSPIR 120
            KV+  E DQ    IL     + + ++H  +  +++  D LK DF++    FF+++ PI+
Sbjct: 78  -KVLAYEIDQDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKPIK 136

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++F    +D     +ESLTL+ QKEV ER+ A   +  YG L++    
Sbjct: 137 VVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQT 193

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQ 239
           +    M   +    F P PKV S V+   P    +     E+ + + +  F +RRKTL  
Sbjct: 194 QMAVKMAVMVDHTNFNPQPKVDSAVVVLKPLAKKVDVGDTENFEHVVKMCFSQRRKTLNN 253

Query: 240 SLKRL--GGE---NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +LK L   GE   NLL    +    R E L+I  F  +   L
Sbjct: 254 NLKSLVKNGEERKNLLQMLDLPEKARPEELTIGQFISLAKAL 295


>gi|253730960|ref|ZP_04865125.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253735227|ref|ZP_04869392.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|297207404|ref|ZP_06923843.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300910363|ref|ZP_07127816.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380509|ref|ZP_07363186.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|253725310|gb|EES94039.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726787|gb|EES95516.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|296887967|gb|EFH26861.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300888352|gb|EFK83539.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302750383|gb|ADL64560.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340954|gb|EFM06877.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320139421|gb|EFW31299.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144198|gb|EFW35966.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 303

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    A
Sbjct: 20  RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANLP
Sbjct: 79  KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 137

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ + 
Sbjct: 138 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 194

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 195 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 254

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         QAGI+   R E LSI+DF ++
Sbjct: 255 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 291


>gi|56707611|ref|YP_169507.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670082|ref|YP_666639.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456681|ref|ZP_03665154.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370128|ref|ZP_04986134.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874431|ref|ZP_05247141.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|62900471|sp|Q5NHI5|RSMA_FRATT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600868|sp|Q14IY7|RSMA_FRAT1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56604103|emb|CAG45102.1| dimethyladenosine transferase , kasugamycin resistance [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320415|emb|CAL08485.1| dimethyladenosine transferase , kasugamycin resistance [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568372|gb|EDN34026.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840430|gb|EET18866.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158768|gb|ADA78159.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 262

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 138/266 (51%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL+  +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           +E D      L   + Q      I   D LK D     N S+  I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS   GRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F+P PKV S ++   P +   +       ++I +++F +RRKTL  +LK +  E  +  +
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 254 G--IETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|298693823|gb|ADI97045.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 297

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 145/277 (52%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    A
Sbjct: 14  RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
           ++V+  E DQ+  P+L D  S + N + +I +D LK + +K           I ++ANLP
Sbjct: 73  KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKKAVENHLQDCEKIMVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ + 
Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         QAGI+   R E LSI+DF ++
Sbjct: 249 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 285


>gi|154684561|ref|YP_001419722.1| dimethyladenosine transferase [Bacillus amyloliquefaciens FZB42]
 gi|154350412|gb|ABS72491.1| KsgA [Bacillus amyloliquefaciens FZB42]
          Length = 293

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/297 (35%), Positives = 148/297 (49%), Gaps = 32/297 (10%)

Query: 3   MNNKSHSL----KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           MNNK  +     K IL  Y    KK +GQNFL+D NIL +I + +   D   VIEIG G 
Sbjct: 1   MNNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGI 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFN 114
           G LT+ L    A+KV+  E DQ+  PIL D  S + N + II  D LK D     E+ F 
Sbjct: 61  GALTEQLAK-RAKKVVAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVKSVIEEQFQ 118

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
               I + ANLPY + T ++   +  +  P   + + ++ QKEV ER+ A  +S  YG L
Sbjct: 119 DCDEIMVTANLPYYVTTPIIMKLLE-EHLP--LKGIVVMLQKEVAERMAADPSSKEYGSL 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI------PCCLESLKKITQE 228
           S+   + T+A  +  +   VF P P V S VI  +    P       P   + +K     
Sbjct: 176 SIAVQFYTEAKTVMTVPKTVFVPQPNVDSAVIRLLLRDGPAVDVDNEPFFFQLIKA---- 231

Query: 229 AFGKRRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +F +RRKTL  +L         K+   E +L +  I+   R E+LSIE+F  ++N L
Sbjct: 232 SFAQRRKTLLNNLVNNLPGGKEKKAQIEEVLQETNIDGKRRGESLSIEEFALLSNGL 288


>gi|332978369|gb|EGK15092.1| dimethyladenosine transferase [Psychrobacter sp. 1501(2011)]
          Length = 297

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 150/293 (51%), Gaps = 22/293 (7%)

Query: 1   MTMNNKS-HSLKTILSHY-KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           MT ++ S H L + L    K  P+K  GQNFL D +I+ +I +S G      ++EIG G 
Sbjct: 1   MTHSDASKHPLHSTLQKAAKHQPRKRFGQNFLHDDSIIIQIVDSIGLNRDDNLVEIGPGM 60

Query: 59  GNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-- 115
           G LT+ LL  + A  VI +++D      ++  ++ HPN   I+  +A++ D+   +N   
Sbjct: 61  GALTEPLLEQVDAMTVIELDRDLASSLRIRIGANSHPN-FHIVNTNAMQFDYSTLYNKEG 119

Query: 116 ----SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
               +  +RI+ NLPYNI T LLF  +    +    E +  + QKEV ERITA   S  Y
Sbjct: 120 EGAETKKLRIVGNLPYNISTPLLFTLLD---YSDIIEDMHFMLQKEVVERITADVGSKIY 176

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEA 229
           GRLSV+  +  +   +  +    F P PKVTS V    PHL  P+    E L   + +E 
Sbjct: 177 GRLSVIMQYHCETEYLLTVPRGAFNPPPKVTSAVFRLRPHLTKPVQAEDEKLFALVVRET 236

Query: 230 FGKRRKTLRQSLKR------LGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           F  RRKTLR   K+      L  E+     GIE   R E L ++DF  ++N++
Sbjct: 237 FNHRRKTLRAIFKQSSLMATLTDED-FDSIGIEGTARPETLDVKDFVALSNLV 288


>gi|149191630|ref|ZP_01869874.1| dimethyladenosine transferase [Vibrio shilonii AK1]
 gi|148834530|gb|EDL51523.1| dimethyladenosine transferase [Vibrio shilonii AK1]
          Length = 268

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 139/265 (52%), Gaps = 13/265 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYVIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GKEVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP+   +L I + DA++ DF +  N ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPDLGDKLTIHEGDAMRFDFTQLVNPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P P   L+ L ++ ++ F +RRKT+R   K L     L + G+ 
Sbjct: 184 PKVDSAVVRLVPYEELPYPATSLKWLDRVCRDGFNQRRKTVRNCYKSLMSAETLEELGVN 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281
            ++R ENL+++ F  + N L +N +
Sbjct: 244 PSMRPENLTLQQFVAMANWLDENHN 268


>gi|312898803|ref|ZP_07758191.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359]
 gi|310619965|gb|EFQ03537.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359]
          Length = 285

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 139/272 (51%), Gaps = 13/272 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ I+  + +   K  GQNFL+  +++K IA ++   +G  V+EIG G G LTQ L    
Sbjct: 13  VRYIVKRFNLRMSKKWGQNFLIRPDVVKNIAIAADIGEGDEVLEIGPGIGTLTQALAETK 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  +E D +  PIL      + N + II  D LK+D  K  N  S   + ANLPY I
Sbjct: 73  A-SVTAVEIDDRLLPILDKTLEDYEN-VRIIHGDILKIDINKEMNERS-FTVCANLPYYI 129

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   +  +  P     + ++ QKEV ER+TA+  S  YG LSV   + TK    FD
Sbjct: 130 TTPIIMRLLE-ERLP--IRKMVVMVQKEVAERMTAKPGSRIYGALSVAVQYYTKPRCEFD 186

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-- 245
           ISP  F P P VTSTV+       P     +     ++ + AF +RRKTL  +LK  G  
Sbjct: 187 ISPQSFLPPPAVTSTVVSMEVRTEPAVAVKDEKLFFRVVKFAFAQRRKTLLNALKGGGVP 246

Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITN 274
                 +L  +GI+ + R E LS+++F  I +
Sbjct: 247 TEEASCMLETSGIDGSRRGETLSLQEFASIAD 278


>gi|240145093|ref|ZP_04743694.1| dimethyladenosine transferase [Roseburia intestinalis L1-82]
 gi|257202765|gb|EEV01050.1| dimethyladenosine transferase [Roseburia intestinalis L1-82]
          Length = 290

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 145/283 (51%), Gaps = 20/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            +L  Y    +K  GQNFL+D ++L+KI E++G      V+EIG G G +TQ L    AR
Sbjct: 12  AVLQKYHFNFQKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTMTQYLCE-NAR 70

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128
           +V  +E D    PIL+D  S + N + +I  D LK+D  K     N   PI+++ANLPY 
Sbjct: 71  EVTAVEIDTNLIPILEDTLSAYDN-VTVINQDILKLDIAKLAMERNGGKPIKVVANLPYY 129

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++     +       +S+T++ QKEV +R+     +  YG LS+   +  K  ++ 
Sbjct: 130 ITTPIIMGLFESHVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLAVQFYAKPEIVA 186

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK--- 242
           ++ P+ F P P V S VI    H   +P  ++  K    I + +F +RRKTL   L    
Sbjct: 187 NVPPNCFMPRPNVGSAVIRLTRH-EEVPVQVDDEKLMFHIIRASFNQRRKTLANGLSNAP 245

Query: 243 --RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
              L  E +   + + G    +R E L++E F  ++NI+ + Q
Sbjct: 246 QVHLSKEEIQECIAELGEPLTIRGEALTLEQFAALSNIIGNRQ 288


>gi|15926170|ref|NP_373703.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282177|ref|NP_645265.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485357|ref|YP_042578.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57634617|ref|NP_371017.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|57651375|ref|YP_185424.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160474|ref|YP_493179.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194251|ref|YP_499043.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148266951|ref|YP_001245894.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392997|ref|YP_001315672.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978821|ref|YP_001441080.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161508739|ref|YP_001574398.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142315|ref|ZP_03566808.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253316230|ref|ZP_04839443.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255005286|ref|ZP_05143887.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|258429609|ref|ZP_05688283.1| ksgA protein [Staphylococcus aureus A9299]
 gi|258446120|ref|ZP_05694281.1| dimethyladenosine transferase [Staphylococcus aureus A6300]
 gi|258448028|ref|ZP_05696158.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus A6224]
 gi|258453825|ref|ZP_05701798.1| dimethyladenosine transferase [Staphylococcus aureus A5937]
 gi|262049978|ref|ZP_06022837.1| dimethyladenosine transferase [Staphylococcus aureus D30]
 gi|262052522|ref|ZP_06024719.1| dimethyladenosine transferase [Staphylococcus aureus 930918-3]
 gi|269202113|ref|YP_003281382.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895100|ref|ZP_06303320.1| dimethyladenosine transferase [Staphylococcus aureus A8117]
 gi|282915811|ref|ZP_06323579.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           D139]
 gi|282925567|ref|ZP_06333220.1| dimethyladenosine transferase [Staphylococcus aureus A9765]
 gi|283768928|ref|ZP_06341837.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           H19]
 gi|284023502|ref|ZP_06377900.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           132]
 gi|294850352|ref|ZP_06791085.1| dimethyladenosine transferase [Staphylococcus aureus A9754]
 gi|295407382|ref|ZP_06817179.1| dimethyladenosine transferase [Staphylococcus aureus A8819]
 gi|296276552|ref|ZP_06859059.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297246462|ref|ZP_06930302.1| dimethyladenosine transferase [Staphylococcus aureus A8796]
 gi|47606760|sp|Q932G1|RSMA_STAAM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|54037709|sp|P66663|RSMA_STAAW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|54041550|sp|P66662|RSMA_STAAN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900458|sp|Q5HII3|RSMA_STAAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900527|sp|Q6GBZ5|RSMA_STAAS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365846|sp|Q2FJE9|RSMA_STAA3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365847|sp|Q2G0T0|RSMA_STAA8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221707|sp|A7WYP0|RSMA_STAA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028820|sp|A6TYW7|RSMA_STAA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028821|sp|A5IQ45|RSMA_STAA9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028822|sp|A8Z0Y8|RSMA_STAAT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|13700383|dbj|BAB41681.1| ksgA [Staphylococcus aureus subsp. aureus N315]
 gi|21203613|dbj|BAB94313.1| ksgA [Staphylococcus aureus subsp. aureus MW2]
 gi|46395517|dbj|BAB56655.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|49243800|emb|CAG42225.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285561|gb|AAW37655.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126448|gb|ABD20962.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201809|gb|ABD29619.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740020|gb|ABQ48318.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945449|gb|ABR51385.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720956|dbj|BAF77373.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160367548|gb|ABX28519.1| possible dimethyladenosine transferase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257849668|gb|EEV73635.1| ksgA protein [Staphylococcus aureus A9299]
 gi|257855097|gb|EEV78039.1| dimethyladenosine transferase [Staphylococcus aureus A6300]
 gi|257858718|gb|EEV81591.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus A6224]
 gi|257863996|gb|EEV86751.1| dimethyladenosine transferase [Staphylococcus aureus A5937]
 gi|259159569|gb|EEW44616.1| dimethyladenosine transferase [Staphylococcus aureus 930918-3]
 gi|259161913|gb|EEW46496.1| dimethyladenosine transferase [Staphylococcus aureus D30]
 gi|262074403|gb|ACY10376.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940064|emb|CBI48440.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282320302|gb|EFB50644.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           D139]
 gi|282592471|gb|EFB97483.1| dimethyladenosine transferase [Staphylococcus aureus A9765]
 gi|282762518|gb|EFC02658.1| dimethyladenosine transferase [Staphylococcus aureus A8117]
 gi|283461109|gb|EFC08195.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283469785|emb|CAQ48996.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ST398]
 gi|285816192|gb|ADC36679.1| Dimethyladenosine transferase [Staphylococcus aureus 04-02981]
 gi|294822776|gb|EFG39212.1| dimethyladenosine transferase [Staphylococcus aureus A9754]
 gi|294967739|gb|EFG43771.1| dimethyladenosine transferase [Staphylococcus aureus A8819]
 gi|297176649|gb|EFH35911.1| dimethyladenosine transferase [Staphylococcus aureus A8796]
 gi|312828988|emb|CBX33830.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315128619|gb|EFT84622.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315196174|gb|EFU26530.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329313211|gb|AEB87624.1| Ribosomal RNA small subunit methyltransferase A [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329725046|gb|EGG61541.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           21172]
 gi|329729797|gb|EGG66194.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           21189]
 gi|329731076|gb|EGG67448.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 297

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    A
Sbjct: 14  RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANLP
Sbjct: 73  KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ + 
Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         QAGI+   R E LSI+DF ++
Sbjct: 249 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 285


>gi|313639861|gb|EFS04574.1| dimethyladenosine transferase [Listeria seeligeri FSL S4-171]
          Length = 284

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 144/280 (51%), Gaps = 29/280 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLPY 131

Query: 128 NIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            + T    +LL + I AD       S+T + QKEV +RI+A  ++  YG L++   +  +
Sbjct: 132 YVTTPIILKLLHDNIPAD-------SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYME 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL 241
           A + F +   VF P P V S VIH      P+    +     ++T+ +F +RRKTL  +L
Sbjct: 185 AELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDEAFFFEVTRASFAQRRKTLWNNL 244

Query: 242 KRLGGE---------NLLHQAGIETNLRAENLSIEDFCRI 272
                E           L+  GI+   R E L I +F ++
Sbjct: 245 ASKFPELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKL 284


>gi|189461759|ref|ZP_03010544.1| hypothetical protein BACCOP_02425 [Bacteroides coprocola DSM 17136]
 gi|189431519|gb|EDV00504.1| hypothetical protein BACCOP_02425 [Bacteroides coprocola DSM 17136]
          Length = 262

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/255 (36%), Positives = 134/255 (52%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + K IA++  +   + ++E+G G G LTQ L+  G R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLQVAKDIADTVDTCPDLPILEVGPGMGVLTQFLIPKG-RPVKVVELDF 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++  ++  +   II+ D LK+D    FN  +P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLRENFAELGDN--IIEQDFLKMDLSALFN-GNPFVLTGNYPYNISSQIFFKMLDY 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   +  YG LSVL     K   +F +  HVF P PK
Sbjct: 122 KDLIP---CCTGMIQKEVAERIAACPGNKTYGILSVLIQAWYKVEYLFTVHEHVFNPPPK 178

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +      C E L K+I +  F +RRKTLR S+  +  +     A    N 
Sbjct: 179 VKSAVIRMTRNETKELGCNEKLFKQIVKTTFNQRRKTLRNSISPILEKGNPLSADPIFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+EDF  +TN
Sbjct: 239 RPEQLSVEDFIELTN 253


>gi|168205777|ref|ZP_02631782.1| dimethyladenosine transferase [Clostridium perfringens E str.
           JGS1987]
 gi|168209755|ref|ZP_02635380.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC
           3626]
 gi|168217634|ref|ZP_02643259.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239]
 gi|170662648|gb|EDT15331.1| dimethyladenosine transferase [Clostridium perfringens E str.
           JGS1987]
 gi|170712059|gb|EDT24241.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC
           3626]
 gi|182380335|gb|EDT77814.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239]
          Length = 285

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 143/279 (51%), Gaps = 14/279 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K    K ++  Y     K +GQNFL+D ++ + I   +   +   VIEIG G G LT  L
Sbjct: 7   KDIKTKELVQKYNFRFSKSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVGTLTVQL 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   A++V+ IE D    PIL      +P + ++I +DALKVDF +       ++++ANL
Sbjct: 67  LK-RAKRVVAIELDSSLIPILTAELGDNP-KFQLIHNDALKVDFNEIIGAEKSVKLVANL 124

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++ N +        ++SLT++ QKEV ER+ A+ N   YG LS+L  +     
Sbjct: 125 PYYVTTPIIVNLLKGGYN---FKSLTIMIQKEVAERMNAEPNCKDYGALSILVQYYCNTK 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK 242
           ++  + P  F P PKV S VI  +  L      +++ K   +I + AF  RRKTL  + K
Sbjct: 182 IVRKVPPSCFIPRPKVDSIVIR-LERLEEPSVKVKNEKLFFEIVRHAFNMRRKTLWNATK 240

Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            +       E    + GI+   R E LS+ +F  +++ +
Sbjct: 241 NVKLPKELMEKAYEEVGIDPKRRGETLSLAEFGALSDAI 279


>gi|309390027|gb|ADO77907.1| dimethyladenosine transferase [Halanaerobium praevalens DSM 2228]
          Length = 297

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 147/282 (52%), Gaps = 23/282 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LG 69
           K IL+ Y +  KK +GQNFL+D NI++ I+ S+       +IEIG G G+LTQ +L  L 
Sbjct: 12  KKILNKYNLNLKKSLGQNFLVDQNIIEIISSSAAIKGDEFIIEIGPGIGSLTQSILNKLK 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
              ++ +EKD     +L DI ++  N+L +I  DALK+D     EK+      ++++ANL
Sbjct: 72  TGNLLAVEKDAAMVEVLNDIFAEE-NKLTLINQDALKIDWPEILEKYNPEKKKVKLLANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   + ++      E++  + QKEVGERI A   +  +G LSV   +  +  
Sbjct: 131 PYYVTTPIIMGVLESEIE---LENMVFMVQKEVGERICAGPETKKFGSLSVAVQYYMQPE 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-----KITQEAFGKRRKTLRQS 240
           ++  +  +VF P P V S ++   P+   I    E L      +I +  F +RRKTLR S
Sbjct: 188 IIHQVPANVFIPQPNVDSVIVGLAPYPENI-YQKEVLNQDFFFQIVKSIFQQRRKTLRNS 246

Query: 241 LKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITN 274
           L R    NL        L+  GI    R E LSI +   I+N
Sbjct: 247 LSRSAIINLDRDLVTQALNDEGIGIKKRGEKLSILEMISISN 288


>gi|78222518|ref|YP_384265.1| dimethyladenosine transferase [Geobacter metallireducens GS-15]
 gi|118600869|sp|Q39W34|RSMA_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78193773|gb|ABB31540.1| dimethyladenosine transferase [Geobacter metallireducens GS-15]
          Length = 275

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 136/269 (50%), Gaps = 16/269 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  +K +GQNFL+D ++L +IA+         ++E+G G G LT+ML    AR ++ +E 
Sbjct: 6   IRARKALGQNFLVDRHVLARIADIVDMRPDDRILEVGPGKGALTEMLAHRCAR-LVAVEL 64

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIGTRLLFN 136
           D +  P+L+     +P R+EI+  D L++D           R  + ANLPYNI T +LF 
Sbjct: 65  DTRLVPVLRQAFRDNP-RVEIVHGDILEIDLRDLLAYEGGERWKVAANLPYNISTPVLFA 123

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           ++        +  L L+ QKEVG+R+ A   +  YG LSV        T    + P  F 
Sbjct: 124 FLDNRD---LFSRLVLMLQKEVGDRLAASPGTKDYGILSVFFQLHFDVTREMIVRPGSFH 180

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG----GENL- 249
           P PKV S V+ F+P   P     +    +++ + AF  RRKTL   LK  G    GE L 
Sbjct: 181 PVPKVDSAVLSFVPLEKPRVAVGDEQYFRRLVKGAFSMRRKTLWNCLKNAGLGLSGEQLS 240

Query: 250 --LHQAGIETNLRAENLSIEDFCRITNIL 276
             L   GIE   R E LS+++F  ++  +
Sbjct: 241 EALAVCGIEPGRRGETLSLDEFAALSRAM 269


>gi|317473695|ref|ZP_07932982.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA]
 gi|316898816|gb|EFV20843.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA]
          Length = 286

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 18/277 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y    +K  GQNFL+D ++L+KI +++       V+EIG G G +TQ  L+  AR+
Sbjct: 13  IIQKYNFDFQKKFGQNFLIDSHVLEKIIDAANITKDDFVLEIGPGIGTMTQ-YLSEHARE 71

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129
           V+ +E D    PILK+  + + N +E++ +D LKVD  K     N   PI+++ANLPY I
Sbjct: 72  VMAVEIDHNLIPILKETLAGYDN-VEVLNEDILKVDIGKIAEKKNQGRPIKVVANLPYYI 130

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++      +      +SLT++ QKEV +R+ A   +  YG LS+   +  +  ++ +
Sbjct: 131 TTPIIMGLFEKNVP---MDSLTVMVQKEVAQRMQAGPGTKDYGALSLAVQFYAEPYIVAN 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLK----- 242
           + P+ F P PKV S VI    + + P+    E L   I + +F +RRKTL+  +      
Sbjct: 188 VPPNCFMPRPKVGSAVICLTRYKDMPVKVKNEQLMFSIIRASFNQRRKTLQNGINNSSTL 247

Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276
               E +   L + G+   +R E LS+E F R++++L
Sbjct: 248 HFSKEQVVDALDKMGLSPKIRGEALSLEQFARLSDLL 284


>gi|255506936|ref|ZP_05382575.1| dimethyladenosine transferase [Chlamydia trachomatis D(s)2923]
 gi|289525395|emb|CBJ14872.1| dimethyladenosine transferase [Chlamydia trachomatis Sweden2]
 gi|296434947|gb|ADH17125.1| dimethyladenosine transferase [Chlamydia trachomatis E/150]
 gi|296438667|gb|ADH20820.1| dimethyladenosine transferase [Chlamydia trachomatis E/11023]
          Length = 277

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 141/265 (53%), Gaps = 17/265 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++LL+ GA  VI +EKD  
Sbjct: 21  KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139
             P+ ++  SQ P  +EI   DA +       +       RI+ANLPY+I T LL  +  
Sbjct: 78  --PMFEESLSQLPMDIEIT--DACEYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P  W+++T++ Q EV  RITA+     YG L+V   +       F +SP+ F+P P
Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKP 191

Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253
            V S V+H   H         +E    +T+ AFG+RRK L  SLK L  ++    +L Q 
Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G     R E + +E++ +I ++L D
Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|160947751|ref|ZP_02094918.1| hypothetical protein PEPMIC_01686 [Parvimonas micra ATCC 33270]
 gi|158446885|gb|EDP23880.1| hypothetical protein PEPMIC_01686 [Parvimonas micra ATCC 33270]
          Length = 280

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 142/272 (52%), Gaps = 14/272 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K I   +     K  GQNFL D NIL+KI E S       VIEIG G G LT+ LL   
Sbjct: 9   IKEICDKFGFSFSKNFGQNFLTDRNILEKIVEVSAVGKDYGVIEIGPGFGVLTKFLLE-K 67

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLP 126
           A KV+ IE D +   +L    S++ N  E +Q DALK+D +K          I ++ANLP
Sbjct: 68  AGKVVSIEIDTRLKEVLDYTLSEYDN-FEFVQSDALKIDLKKLIEEKFTQKKIVVVANLP 126

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   + +D      ES+T++ QKEV +R+ A +NS     +S+   +   A +
Sbjct: 127 YYVTTPIITKLLESDLD---LESITIMVQKEVAQRLVADENSKDNSSISLFVKYYADANI 183

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            F +S +VF P+P V S+V++            +++ K+ +  F  RRKT+  S  + G 
Sbjct: 184 AFSVSRNVFVPAPNVDSSVVNMKLKKEKFEYE-KTMFKLIKNGFENRRKTILNSFCKSGI 242

Query: 247 E-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           E      +L +  I+T +RAE LS++DF  I 
Sbjct: 243 EKEKIIKILEKLDIDTRIRAEKLSLKDFKNIA 274


>gi|294778235|ref|ZP_06743661.1| dimethyladenosine transferase [Bacteroides vulgatus PC510]
 gi|294447863|gb|EFG16437.1| dimethyladenosine transferase [Bacteroides vulgatus PC510]
          Length = 280

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/263 (37%), Positives = 136/263 (51%), Gaps = 24/263 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           PKK++GQ+FL DL+I K IA++      + ++E+G G G LTQ ++    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLSIAKDIADTVNVCPDLPILEVGPGMGVLTQFIMQ-KNRPVKVVELDY 64

Query: 80  ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                 ++ FP L+D          II+DD LK++ EK F+   P  +  N PYNI +++
Sbjct: 65  ESVAYLRENFPALED---------NIIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQI 114

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     T + QKEV ERI A   S  YG LS+L     K   +F +  H
Sbjct: 115 FFKMLDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEH 171

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR-LGGENLLH 251
           VF P PKV S VI    +      C E L K I +  F +RRKTLR S+   L  EN L 
Sbjct: 172 VFNPPPKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLS 231

Query: 252 QAGIETNLRAENLSIEDFCRITN 274
              I  N R E LS+++F  +TN
Sbjct: 232 TDPI-FNKRPEQLSVQEFIELTN 253


>gi|229551483|ref|ZP_04440208.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1]
 gi|258540770|ref|YP_003175269.1| dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705]
 gi|229315166|gb|EEN81139.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1]
 gi|257152446|emb|CAR91418.1| Dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705]
          Length = 294

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 139/278 (50%), Gaps = 18/278 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  +    +K +GQNFL D  IL+KI  ++   +   VIEIG G G LTQ L    A 
Sbjct: 13  AILKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLAD-QAH 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPY 127
           +V+ +E D +  PIL +  + +PN   ++ +D LK +  +     F+ +  ++++ANLPY
Sbjct: 72  QVVALEIDDRLLPILAETLADYPNT-TVVNEDVLKTNLTELVATHFDGNHTLKVVANLPY 130

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T +L + + A   P    S+T++ QKEV  R++A   S  YG LS+           
Sbjct: 131 YITTPILLHLLRAH-LP--LHSMTVMMQKEVAARLSATPGSKDYGSLSIAVQLVADVATA 187

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +S H F P+P V S ++       P+      +S  ++ + AF  RRKTL  +L  L 
Sbjct: 188 FTVSRHAFVPAPNVDSAIVTLTQRPEPLAAVKNPDSFDRLVRGAFASRRKTLWNNLVALF 247

Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           G+         L  A I    RAE L+I DF R+   L
Sbjct: 248 GKPNKAAIRTALSVAEIAPETRAEQLAITDFARLDEAL 285


>gi|238928059|ref|ZP_04659819.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531]
 gi|238884019|gb|EEQ47657.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531]
          Length = 292

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 149/273 (54%), Gaps = 14/273 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ + +   K +GQNFL+D  +++ I +++      TV+EIG G G LTQ L   GA
Sbjct: 15  RHILNAFHLRASKRLGQNFLVDAGVVRAIVDAADLSPADTVLEIGPGIGTLTQGLAESGA 74

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYN 128
           R V+ +E D++   +L +    + N + I+  D LK+D  +  N+ +    +++ANLPY 
Sbjct: 75  R-VVAVELDKKLPAVLAETLKGYDN-VAIVPGDILKLDILRILNLGAGEQFKVVANLPYY 132

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L   +  +   P    +T++ QKEV  R+TA+  S  YG LS+   + T A ++ 
Sbjct: 133 ITTPILMALL--EQHLPIARMVTMV-QKEVAVRMTARPGSKDYGALSIAVQYYTDAHIVM 189

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG 246
           D+ P  F P+P+VTS VI       P  C  +     ++ + AFG+RRKTL  +L   G 
Sbjct: 190 DVPPRAFMPAPEVTSAVIACRVRETPSVCPTDEKLFFRLVRAAFGQRRKTLLNALTGAGL 249

Query: 247 ENLLHQ-----AGIETNLRAENLSIEDFCRITN 274
              L +     AG+  ++R E LS+ DF R+++
Sbjct: 250 TKELCRAGLAAAGLAASIRGEQLSLADFARLSD 282


>gi|237719828|ref|ZP_04550309.1| dimethyladenosine transferase [Bacteroides sp. 2_2_4]
 gi|229451097|gb|EEO56888.1| dimethyladenosine transferase [Bacteroides sp. 2_2_4]
          Length = 266

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 134/255 (52%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEVDY 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLREAYPSLEDH--IIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKMLDN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P PK
Sbjct: 122 KD---IVLCCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPPPK 178

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +      C E L K++ +  F +RRKTLR S+K + G++      I  N 
Sbjct: 179 VKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+ +F  +TN
Sbjct: 239 RPEQLSVAEFIDLTN 253


>gi|150004476|ref|YP_001299220.1| dimethyladenosine transferase [Bacteroides vulgatus ATCC 8482]
 gi|166221645|sp|A6L1N4|RSMA_BACV8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|149932900|gb|ABR39598.1| dimethyladenosine transferase [Bacteroides vulgatus ATCC 8482]
          Length = 280

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/263 (37%), Positives = 136/263 (51%), Gaps = 24/263 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           PKK++GQ+FL DL+I K IA++      + ++E+G G G LTQ ++    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQ-KNRPVKVVELDY 64

Query: 80  ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                 ++ FP L+D          II+DD LK++ EK F+   P  +  N PYNI +++
Sbjct: 65  ESVAYLRENFPALED---------NIIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQI 114

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     T + QKEV ERI A   S  YG LS+L     K   +F +  H
Sbjct: 115 FFKMLDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEH 171

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR-LGGENLLH 251
           VF P PKV S VI    +      C E L K I +  F +RRKTLR S+   L  EN L 
Sbjct: 172 VFNPPPKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLS 231

Query: 252 QAGIETNLRAENLSIEDFCRITN 274
              I  N R E LS+++F  +TN
Sbjct: 232 ADPI-FNKRPEQLSVQEFIELTN 253


>gi|282907815|ref|ZP_06315653.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910131|ref|ZP_06317937.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282325979|gb|EFB56285.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328291|gb|EFB58566.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
          Length = 299

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    A
Sbjct: 16  RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 74

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANLP
Sbjct: 75  KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 133

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ + 
Sbjct: 134 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEIGSKAYGSLSIVVQYYTETSK 190

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 191 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 250

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         QAGI+   R E LSI+DF ++
Sbjct: 251 FKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKL 287


>gi|313884585|ref|ZP_07818346.1| dimethyladenosine transferase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620369|gb|EFR31797.1| dimethyladenosine transferase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 296

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 150/279 (53%), Gaps = 26/279 (9%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+ +Y I  KK +GQNFL++ NIL K+  ++      TVIEIG G G LT+  L L A++
Sbjct: 16  IMKYYDIAMKKSLGQNFLIEPNILDKMVAAADIDSDTTVIEIGPGIGALTE-FLALSAKQ 74

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR--IIANLPYN 128
           V+  E D +F  IL++  + + N +++I  D LKVDF+  ++ ++    R  ++ANLPY 
Sbjct: 75  VLAFEIDARFVSILENTLAAYDN-VKVIHQDILKVDFQAPEYASLKDLDRLVVVANLPYY 133

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++ + I  D+  PF + L ++ QKEV ER+TAQ  +  Y  L++    + +A + F
Sbjct: 134 ITTPIIMHLI--DSHLPF-DRLVMMMQKEVAERMTAQVGTKAYNSLTIAIQLQMQARLDF 190

Query: 189 DISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            +  +VF P P V S V+       P L+     L   +   Q AF  RRKTL  + K  
Sbjct: 191 IVPKNVFIPKPNVDSAVLVLERLATPRLD--LADLSDFQNFVQAAFVYRRKTLWNNYKNA 248

Query: 245 GGENL-----------LHQAGIETNLRAENLSIEDFCRI 272
              NL             QA ++   R E+LS+E+F ++
Sbjct: 249 MSTNLADLSADQWEAIFDQAELDRQRRGESLSLEEFGQL 287


>gi|255348718|ref|ZP_05380725.1| dimethyladenosine transferase [Chlamydia trachomatis 70]
 gi|255503258|ref|ZP_05381648.1| dimethyladenosine transferase [Chlamydia trachomatis 70s]
          Length = 277

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 141/265 (53%), Gaps = 17/265 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++LL+ GA  VI +EKD  
Sbjct: 21  KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139
             P+ ++  SQ P  +EI   DA +       +       RI+ANLPY+I T LL  +  
Sbjct: 78  --PMFEESLSQLPMDIEIT--DACEYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P  W+++T++ Q EV  RITA+     YG L+V   +       F +SP+ F+P P
Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKP 191

Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253
            V S V+H   H         +E    +T+ AFG+RRK L  SLK L  ++    +L Q 
Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G     R E + +E++ +I ++L D
Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|254882792|ref|ZP_05255502.1| dimethyladenosine transferase [Bacteroides sp. 4_3_47FAA]
 gi|319643892|ref|ZP_07998475.1| dimethyladenosine transferase [Bacteroides sp. 3_1_40A]
 gi|254835585|gb|EET15894.1| dimethyladenosine transferase [Bacteroides sp. 4_3_47FAA]
 gi|317384509|gb|EFV65475.1| dimethyladenosine transferase [Bacteroides sp. 3_1_40A]
          Length = 280

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/263 (37%), Positives = 136/263 (51%), Gaps = 24/263 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           PKK++GQ+FL DL+I K IA++      + ++E+G G G LTQ ++    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQ-KNRPVKVVELDY 64

Query: 80  ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                 ++ FP L+D          II+DD LK++ EK F+   P  +  N PYNI +++
Sbjct: 65  ESVAYLRENFPALED---------NIIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQI 114

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     T + QKEV ERI A   S  YG LS+L     K   +F +  H
Sbjct: 115 FFKMLDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEH 171

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR-LGGENLLH 251
           VF P PKV S VI    +      C E L K I +  F +RRKTLR S+   L  EN L 
Sbjct: 172 VFNPPPKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLS 231

Query: 252 QAGIETNLRAENLSIEDFCRITN 274
              I  N R E LS+++F  +TN
Sbjct: 232 TDPI-FNKRPEQLSVQEFIELTN 253


>gi|151220668|ref|YP_001331490.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|172048766|sp|A6QEE6|RSMA_STAAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|150373468|dbj|BAF66728.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           str. Newman]
          Length = 297

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    A
Sbjct: 14  RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGIGSLTEQL-ARHA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANLP
Sbjct: 73  KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ + 
Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         QAGI+   R E LSI+DF ++
Sbjct: 249 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 285


>gi|297591597|ref|ZP_06950234.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|297575466|gb|EFH94183.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312436418|gb|ADQ75489.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 303

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    A
Sbjct: 20  RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANLP
Sbjct: 79  KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 137

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ + 
Sbjct: 138 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEIGSKAYGSLSIVVQYYTETSK 194

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 195 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 254

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         QAGI+   R E LSI+DF ++
Sbjct: 255 FKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKL 291


>gi|257458323|ref|ZP_05623471.1| dimethyladenosine transferase [Treponema vincentii ATCC 35580]
 gi|257444258|gb|EEV19353.1| dimethyladenosine transferase [Treponema vincentii ATCC 35580]
          Length = 289

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N   +L  +L  +    +K  GQNFL++  I +++  + G   G +V E+G G G++T +
Sbjct: 9   NAPSALAAVLDEHGFGMQKKFGQNFLINAYIRQELVSALGLSAGNSVWEVGPGLGSMTSL 68

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL  GA  V V E D+ F  +L      H     +I+ D LK  ++  ++   P     N
Sbjct: 69  LLETGA-DVTVFEIDRGFVQLLTSYFGPH-QSFHLIEGDVLKT-WKAEYDRQVPDAFFGN 125

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI  +L+   I  +    F+  + +  QKEVG R+TA   S  Y   SVL  W    
Sbjct: 126 LPYNIAAKLIAATIETEC---FFNRMVITVQKEVGLRMTAAPGSADYSSFSVLCQWAYDV 182

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR 243
           T + DI+P  F+P P V S  + FI   +P P     L   + +  FG RRKT++ +L  
Sbjct: 183 TPIRDIAPAAFWPKPNVESRALRFIKKRSPQPVRDARLFLTLVRGLFGARRKTVKNNLST 242

Query: 244 L---------GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L           E LL +A I+   RAE+L++ DF R+++I+ 
Sbjct: 243 LLAARGKKTPSAEALLKEASIDPVDRAESLTVYDFIRLSDIVA 285


>gi|227522373|ref|ZP_03952422.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290]
 gi|227090431|gb|EEI25743.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290]
          Length = 301

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ Y++  KK +GQNFL+DLNIL  I E++       VIEIG G G LT+ L    A
Sbjct: 19  QAILNRYRLSAKKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQLAK-AA 77

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D++  P+L +  S + N +EII  D LK +      K F    P++++ANLP
Sbjct: 78  NQVLAFEIDEKLLPVLDETLSPY-NNIEIINQDILKANLPEVVAKRFRTDKPLKVVANLP 136

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ + ++    P  +ES+ ++ QKEV ER+ A+  +  YG LSV+   +    +
Sbjct: 137 YYITTPIVMDLLAN---PVKFESIVVMMQKEVAERLDAKPGTKPYGSLSVIVQQQNDVDI 193

Query: 187 MFDISPHVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +    F P PKV S ++   P   ++  P   +      +  F  +RKTL  +L  +
Sbjct: 194 SFVVPKTAFIPQPKVDSAIVKLSPKMQVDKRPFDHKKFVGFVRGCFMHQRKTLWNNLLGV 253

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITN 274
            G+          +L    I    R E L +E F  +TN
Sbjct: 254 FGKQESVKGQIKKVLDDLSINAANRPEQLLVEQFVALTN 292


>gi|119470580|ref|ZP_01613283.1| dimethyladenosine transferase [Alteromonadales bacterium TW-7]
 gi|119446281|gb|EAW27558.1| dimethyladenosine transferase [Alteromonadales bacterium TW-7]
          Length = 268

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/269 (35%), Positives = 138/269 (51%), Gaps = 23/269 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+ KI  +        ++EIG G G +T+ +  L    + V+E D  
Sbjct: 12  RKRFGQNFLFDEMIIDKIVSAIDPKPEDNLVEIGPGLGAITEPVAELSGH-LTVVELD-- 68

Query: 82  FFPILKDISS---QHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
                KD++    +HP    +L + Q DA+K DF         +++  NLPYNI T LLF
Sbjct: 69  -----KDLAKRLIEHPFLGPKLTVNQGDAMKYDFASLVKDDKKLKVFGNLPYNISTPLLF 123

Query: 136 NWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           +    AD      E +  + QKEV +R+ A   S  +GRLSV+T +   A  + ++ P  
Sbjct: 124 HLFEFADNI----EHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVIEVPPEC 179

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGENLLH 251
           F P+PKV S VI  IP   P     +S+K    +  EAF +RRKTLR SL  L     + 
Sbjct: 180 FKPAPKVDSAVIRLIPK-KPEQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTAEEMA 238

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280
             G++  LRAE+LS++ F  I N + D +
Sbjct: 239 SIGVDATLRAESLSLQQFIDIANWIYDKE 267


>gi|209693971|ref|YP_002261899.1| dimethyladenosine transferase [Aliivibrio salmonicida LFI1238]
 gi|226729749|sp|B6EL48|RSMA_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|208007922|emb|CAQ78053.1| dimethyladenosine transferase [Aliivibrio salmonicida LFI1238]
          Length = 277

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 137/265 (51%), Gaps = 17/265 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKD 79
           KK  GQNFL D  ++  I  +   L G  ++EIG G G +T+    +G    K  VIE D
Sbjct: 14  KKRFGQNFLNDPYVIDGIVSAINPLPGQNLVEIGPGLGAITE---PVGREIDKFTVIELD 70

Query: 80  QQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +     L+     HP   ++L I + DA++ DF +     + +RI  NLPYNI T L+F+
Sbjct: 71  RDLAARLR----THPELGSKLTIYEGDAMRFDFTQLIQEGNKLRIFGNLPYNISTPLMFH 126

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                 +    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F 
Sbjct: 127 LFE---FHKDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVMPVLEVPPTAFV 183

Query: 197 PSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S V+  +P+ + P P   L+ L ++ +E F +RRKT+R   K L  +  L   G
Sbjct: 184 PPPKVDSAVVRLVPYEVLPFPAKNLKWLDRVCREGFNQRRKTVRNCFKALLTKEQLEALG 243

Query: 255 IETNLRAENLSIEDFCRITNILTDN 279
           +  + R ENL++E F  + N L DN
Sbjct: 244 VNPSHRPENLTLEQFVIMANWLNDN 268


>gi|169825672|ref|YP_001695830.1| dimethyladenosine transferase [Lysinibacillus sphaericus C3-41]
 gi|226732594|sp|B1HS82|RSMA_LYSSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|168990160|gb|ACA37700.1| Dimethyladenosine transferase [Lysinibacillus sphaericus C3-41]
          Length = 293

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 143/283 (50%), Gaps = 24/283 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  Y    KK +GQNFL+D NIL+ I   +   +    IE+G G G LT+ L    A
Sbjct: 12  QEILKKYGFSFKKSLGQNFLIDPNILRNIVSHAKLTENSGAIEVGPGIGALTEHL-ARSA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLP 126
           +KV+  E DQ+  P+L+D  S + N + I+  D LK D  K      P    I ++ANLP
Sbjct: 71  KKVVSFEIDQRLLPVLEDTLSPY-NNVSIVHSDILKADVAKVIAEEMPGIEDIMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   ++ D  P       ++ QKEV +RITA+  +  YG LS+   +  KA +
Sbjct: 130 YYVTTPILMKLLN-DRLP--IRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVKADI 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKR 243
              +   VF P P V S VI  I H  P P  +   + L  +T+ +F +RRKT+  +L+ 
Sbjct: 187 AMTVPKTVFMPQPNVDSAVIRLIKHDEP-PVKVINEDFLFVVTRASFVQRRKTIYNNLQA 245

Query: 244 LGGEN----------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G  N           L  A IE   R E L+I++F ++ + L
Sbjct: 246 -GLPNGKTQKDFILEALAAANIEPTRRGETLTIQEFGKLADAL 287


>gi|255007603|ref|ZP_05279729.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12]
 gi|313145296|ref|ZP_07807489.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12]
 gi|313134063|gb|EFR51423.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12]
          Length = 280

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 136/257 (52%), Gaps = 8/257 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KERLVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++ ++ F    P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFG-GHPFALTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL         +F +S HVF P 
Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYHVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    + +  + C  +  K++ +  F +RRKTLR S+K + G++         
Sbjct: 177 PKVKSAVIRMTRNEVQDLGCDPKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236

Query: 258 NLRAENLSIEDFCRITN 274
           N R E LS+++F  +TN
Sbjct: 237 NKRPEQLSVQEFIELTN 253


>gi|242023243|ref|XP_002432045.1| Dimethyladenosine transferase, putative [Pediculus humanus
           corporis]
 gi|212517403|gb|EEB19307.1| Dimethyladenosine transferase, putative [Pediculus humanus
           corporis]
          Length = 350

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 148/288 (51%), Gaps = 23/288 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ +L  Y++   K + QNFLL+L I  +I +++G +    V E+G GPG +T+ +L  
Sbjct: 10  TIRELLKLYQVHALKRLSQNFLLNLRITDRIVKAAGKIKDGEVCEVGPGPGAITRSILMR 69

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119
             +KV+VIEKDQ+F P+L+++ +      +II  D +  D  K F         +++  I
Sbjct: 70  NPQKVVVIEKDQRFEPMLENLETSSYCDFKIIYADIMDYDLSKLFDESLKKNWNDVTPNI 129

Query: 120 RIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
            +I NLP+N+ T L+  W++      + W      +TL FQ+EV ERI     S +  RL
Sbjct: 130 HLIGNLPFNVSTPLIVRWLNDISLRRNAWSLGRVKMTLTFQEEVAERIIGIPGSKNRCRL 189

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           SV+        + F I    F P PKV   V+HF P + P I    E ++K+ +  F  R
Sbjct: 190 SVMCQNWCDVHLKFKIPGTAFLPKPKVDVGVVHFEPLIEPFIKMDFEIVEKVLRIMFNYR 249

Query: 234 RKTLRQSLKRLGGENLLHQAGIE--------TNLRAENLSIEDFCRIT 273
           +K   +++  L  + L  +  +E          LR+  ++++D+ R+ 
Sbjct: 250 QKYCNRAVANLFPKELSDKLSVELFQRSELNPKLRSYQMTMDDWNRLC 297


>gi|49482720|ref|YP_039944.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257424604|ref|ZP_05601032.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427270|ref|ZP_05603671.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257429907|ref|ZP_05606293.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257432610|ref|ZP_05608972.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257435514|ref|ZP_05611564.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903078|ref|ZP_06310970.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C160]
 gi|282904868|ref|ZP_06312728.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282913320|ref|ZP_06321111.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918274|ref|ZP_06326014.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282923025|ref|ZP_06330711.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957282|ref|ZP_06374740.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500369|ref|ZP_06666221.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509307|ref|ZP_06668023.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M809]
 gi|293515896|ref|ZP_06670586.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427027|ref|ZP_06819664.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|62900528|sp|Q6GJH8|RSMA_STAAR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49240849|emb|CAG39516.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272631|gb|EEV04751.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275921|gb|EEV07389.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279423|gb|EEV10018.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257282475|gb|EEV12608.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257285151|gb|EEV15268.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314544|gb|EFB44931.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317840|gb|EFB48209.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322791|gb|EFB53111.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282331985|gb|EFB61494.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596504|gb|EFC01464.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C160]
 gi|283791206|gb|EFC30016.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290921304|gb|EFD98362.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096329|gb|EFE26589.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467852|gb|EFF10362.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M809]
 gi|295129030|gb|EFG58659.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|315193854|gb|EFU24248.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 297

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    A
Sbjct: 14  RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANLP
Sbjct: 73  KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ + 
Sbjct: 132 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEIGSKAYGSLSIVVQYYTETSK 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 189 VLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 248

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         QAGI+   R E LSI+DF ++
Sbjct: 249 FKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKL 285


>gi|332531189|ref|ZP_08407102.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Hylemonella gracilis ATCC 19624]
 gi|332039296|gb|EGI75709.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Hylemonella gracilis ATCC 19624]
          Length = 254

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 136/258 (52%), Gaps = 21/258 (8%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQ+FL D  I+  I  + G   G  V+EIG G   +TQ L+  LG  ++ VI
Sbjct: 2   KHIPRKRFGQHFLADDGIIDAIVRAIGPQPGQCVVEIGPGLAAMTQPLVERLG--RMTVI 59

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLF 135
           E D+     L+    +HP  LE+I+ D LKVDF     ++   +R++ NLPYNI T +LF
Sbjct: 60  ELDRDLAARLR----KHPQ-LEVIESDVLKVDFSALAALARQKLRVVGNLPYNISTPILF 114

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +         E    + QKEV +R+ AQ ++  Y RLSV+  WR +   +  + P  F
Sbjct: 115 HLLEHVEA---VEDQHFMLQKEVVDRMVAQPSTADYSRLSVMLQWRYEMEDVLFVPPESF 171

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P P+V S V+  +P   P+      L+++ Q AF +RRK LR +L R      L + G+
Sbjct: 172 DPPPRVDSAVVRMVPRSAPVALNARLLEEMVQVAFSQRRKLLRHTLGR-----WLEEKGV 226

Query: 256 ----ETNLRAENLSIEDF 269
               +   RAE + + ++
Sbjct: 227 ADPFDLQRRAEEVPVSEY 244


>gi|255283478|ref|ZP_05348033.1| dimethyladenosine transferase [Bryantella formatexigens DSM 14469]
 gi|255265935|gb|EET59140.1| dimethyladenosine transferase [Bryantella formatexigens DSM 14469]
          Length = 298

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 24/281 (8%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            ++  Y+   +K  GQNFL+D ++L KI  ++       V+EIG G G +TQ L +  A 
Sbjct: 12  AVIQKYEFAFQKKFGQNFLIDGHVLDKIIAAADITKEDFVLEIGPGIGTMTQYL-SEAAG 70

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128
           +V+ +E D+   PIL +  + + N +EI+ +D LKVD        N   PI+++ANLPY 
Sbjct: 71  RVLAVEIDKMLIPILHETLAGYEN-VEILNEDILKVDIAALVEEKNGGKPIKVVANLPYY 129

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++   +         +S+T++ QKEV +R+ AQ  S  YG LS+   +  +  +  
Sbjct: 130 ITTPIIMGLLEQHVP---VKSITVMVQKEVAQRMQAQPGSKDYGALSLAVQYYCEPYIAA 186

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL---- 241
           ++ P+ F P PKV S VI    H  P P   E  K    + + +F +RRKTL   L    
Sbjct: 187 NVPPNCFIPRPKVGSAVIRLTAHREP-PVKTEHEKLMFALIRASFNQRRKTLANGLSNAP 245

Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 + + G   + + G+   +R E L++E F ++ NIL
Sbjct: 246 ELTFTKEEITGA--IEKLGVPAGVRGETLALEQFAQLANIL 284


>gi|227432115|ref|ZP_03914127.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352142|gb|EEJ42356.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 303

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 152/284 (53%), Gaps = 23/284 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ Y +  KK  GQNFL DLN+L  I E++       VIEIG G G LT+  L   A
Sbjct: 22  QAILNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALTEQ-LARSA 80

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           +KV+  E D Q   +L D    + N +++I++D LKVD  K     F  ++ ++I+ANLP
Sbjct: 81  KKVLAFEIDSQMVEVLADTLKPYDN-VKVIENDVLKVDLAKIISEEFGDNAHVKIVANLP 139

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L   + ++     W+++ ++ Q+EV +R+ A   +  YG L++   +  +AT+
Sbjct: 140 YYITTPILIQLLRSNI---NWDNIVVMMQREVADRLNAAVGTKSYGVLTLTIQYFAQATL 196

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKR 243
              +    F PSP V S V+   P L P    +E++ K   + + +F  RRK+L  ++ +
Sbjct: 197 AIKVPASSFNPSPNVDSAVVKLTP-LKP-TTIVENVGKLFGVIKGSFSHRRKSLWNNMLQ 254

Query: 244 LGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
             G++          L  A I+  +RAE L++E F ++  +L D
Sbjct: 255 TYGKDAGTKEQLTVALKSAQIDPAIRAERLNLEQFTQLYLVLRD 298


>gi|91216107|ref|ZP_01253075.1| dimethyladenosine transferase [Psychroflexus torquis ATCC 700755]
 gi|91185624|gb|EAS71999.1| dimethyladenosine transferase [Psychroflexus torquis ATCC 700755]
          Length = 288

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 145/272 (53%), Gaps = 15/272 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           ++  KK++GQ+FL+D +I K+IAE+    +  +V+EIG G G LT+ LL   ++  + ++
Sbjct: 24  EVKAKKHLGQHFLIDEDISKRIAETLQKDNYSSVLEIGPGMGVLTKYLLGKYSQ-FVAMD 82

Query: 78  KDQQFFPIL-KDISSQH-----PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            D++    L      +H        L +I+ D LKVD   +F   +   II N PYNI T
Sbjct: 83  LDRESIAFLNSSFKKEHHIEEDSKALTVIEADFLKVDLSDYFR-DTQFAIIGNFPYNIST 141

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +++F  +      P     + +FQKEV +RI A + S  YG LSVL     KA  +F + 
Sbjct: 142 QIVFKTLEYKEQIP---EFSGMFQKEVAQRICASEGSKTYGILSVLVQAFYKAEYLFTVP 198

Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           P  F P PK+ S V+      N  +PC  + L+ + + AF +RRKTLR SLK+      L
Sbjct: 199 PEAFDPPPKIHSGVLRLQRKENYELPCEEKKLRDVVKTAFQQRRKTLRNSLKKFNLSPEL 258

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            +  I T  R E LS+E F  +T  L  +QD+
Sbjct: 259 REDPIFTK-RPEQLSVEQFIDLT--LKISQDV 287


>gi|59710893|ref|YP_203669.1| dimethyladenosine transferase [Vibrio fischeri ES114]
 gi|197334233|ref|YP_002155045.1| dimethyladenosine transferase [Vibrio fischeri MJ11]
 gi|62900449|sp|Q5E865|RSMA_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732638|sp|B5FGG5|RSMA_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|59478994|gb|AAW84781.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Vibrio fischeri ES114]
 gi|197315723|gb|ACH65170.1| dimethyladenosine transferase [Vibrio fischeri MJ11]
          Length = 272

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 13/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++  I  +   L G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 14  RKRFGQNFLNDPYVIDGIVSAINPLPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 72

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 73  LAERLRN----HPELGSKLTIHEGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMFHLF 128

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 129 E---FHKDVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVMPVLEVPPTAFVPP 185

Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P P   L+ L ++ +E F +RRKT+R   K L  +  L + GI 
Sbjct: 186 PKVDSAVVRLVPYETLPYPATNLKWLDRVCREGFNQRRKTVRNCYKALLTKEQLEELGIN 245

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
            ++R ENL++E F  + N L  N 
Sbjct: 246 PSMRPENLTLEQFVNMANWLDANH 269


>gi|198282486|ref|YP_002218807.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|226729745|sp|B5EL84|RSMA_ACIF5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|198247007|gb|ACH82600.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 268

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 134/256 (52%), Gaps = 10/256 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+   I+++I  +     G  ++EIG GPG LT+ LL L   +  V+E D+ 
Sbjct: 11  KKRFGQNFLVQPQIVERIVAAIRPASGDHLVEIGPGPGALTKSLLRL-LPQFTVVELDRD 69

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+ ++   P +L ++Q DAL+VDF       + +RI+ NLPYN+ T L+F+ +   
Sbjct: 70  MIAGLRALAP--PEQLRVLQADALEVDFAALAGAGNALRIVGNLPYNVATPLIFHILEHA 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                   +  + QKEV +R+ A   S  YGRLSV+         +F ++P  FFP PKV
Sbjct: 128 EQ---VRDMHFMLQKEVVDRVVAMPGSKAYGRLSVMIQAYCAVESLFTVAPGNFFPVPKV 184

Query: 202 TSTVIHFIPHLNP--IPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            S  +  IPH  P  +P  L++   +I   +F +RRKTL  +L+ +   + L    I+  
Sbjct: 185 DSAFMRLIPH-RPGLLPPHLQAPFARIVATSFAQRRKTLANNLRGILSADDLRGLQIDPG 243

Query: 259 LRAENLSIEDFCRITN 274
            RAE L    F R+  
Sbjct: 244 SRAETLDQAAFFRLAE 259


>gi|156358457|ref|XP_001624535.1| predicted protein [Nematostella vectensis]
 gi|156211322|gb|EDO32435.1| predicted protein [Nematostella vectensis]
          Length = 325

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 142/279 (50%), Gaps = 23/279 (8%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  Y +  +K   QNF+LDLNI  KIA+ S   D   V E+GAGPG+LT+ +L  GAR 
Sbjct: 14  LLRLYGLTAQKQFSQNFILDLNITDKIAKVSDVFD-CYVCEVGAGPGSLTRSILNAGARH 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----------IRII 122
           V  +E D++F P L+ +      R+ +   D +K +    F  +SP          +R++
Sbjct: 73  VAAVEIDRRFLPSLQLLEDAAKGRMTLHHADIMKFNIPSAFPRASPTGWESGDIPGVRMV 132

Query: 123 ANLPYNIGTRLLFNWISA--DTWPPFW---ESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            NLP+ +   LL  W+ A  +   PF      + L+FQKEV E I A + S +  RL+V+
Sbjct: 133 GNLPFGVSIPLLLQWLEAIPERSGPFAFGRTPMALVFQKEVAENIVASEGSYNRSRLAVM 192

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKT 236
             +  +A   + +   VF P PKV ++++   P + P I      ++++ +  F  RRK 
Sbjct: 193 VQYLCEAKRRYSLPSSVFVPKPKVDASLVVLTPRVTPLIDAPFIVVEQVVKAVFAMRRKF 252

Query: 237 LRQSLKRL--GGE----NLLHQAGIETNLRAENLSIEDF 269
           +   LK +  G E    +LL  + +    RA  L++ +F
Sbjct: 253 IHTPLKLMFPGKEELVGDLLRLSSVNPEQRAHELAMTEF 291


>gi|260773617|ref|ZP_05882533.1| dimethyladenosine transferase [Vibrio metschnikovii CIP 69.14]
 gi|260612756|gb|EEX37959.1| dimethyladenosine transferase [Vibrio metschnikovii CIP 69.14]
          Length = 271

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 136/260 (52%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +   L G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF++    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELSSKLTIHEGDAMRFDFQQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHKE---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPSAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P P   L+ L ++ +E F +RRKT+R   K L  +    Q  I+
Sbjct: 184 PKVDSAVVRLLPYEELPHPATSLKWLDRVVREGFNQRRKTVRNCYKGLLDDETFAQLAID 243

Query: 257 TNLRAENLSIEDFCRITNIL 276
           + +R ENL+++ F  + N L
Sbjct: 244 STMRPENLTLQQFVSMANWL 263


>gi|218666666|ref|YP_002424676.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|254807853|sp|B7J3R3|RSMA_ACIF2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218518879|gb|ACK79465.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 267

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 130/255 (50%), Gaps = 8/255 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+   I+++I  +     G  ++EIG GPG LT+ LL L   +  V+E D+ 
Sbjct: 10  KKRFGQNFLVQPQIVERIVAAIRPASGDHLVEIGPGPGALTKSLLRL-LPQFTVVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+ ++   P +L ++Q DAL+VDF       + +RI+ NLPYN+ T L+F+ +   
Sbjct: 69  MIAGLRALAP--PEQLRVLQADALEVDFAALAGAGNALRIVGNLPYNVATPLIFHILEHA 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                   +  + QKEV +R+ A   S  YGRLSV+         +F ++P  FFP PKV
Sbjct: 127 EQ---VRDMHFMLQKEVVDRVVAMPGSKAYGRLSVMIQAYCAVESLFTVAPGNFFPVPKV 183

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S  +  IPH   +  P       +I   +F +RRKTL  +L+ +   + L    I+   
Sbjct: 184 DSAFMRLIPHRPGLLPPHLQAPFARIVATSFAQRRKTLANNLRGILSADDLRGLQIDPGS 243

Query: 260 RAENLSIEDFCRITN 274
           RAE L    F R+  
Sbjct: 244 RAETLDQAAFFRLAE 258


>gi|297537784|ref|YP_003673553.1| dimethyladenosine transferase [Methylotenera sp. 301]
 gi|297257131|gb|ADI28976.1| dimethyladenosine transferase [Methylotenera sp. 301]
          Length = 259

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 144/272 (52%), Gaps = 26/272 (9%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K I KK  GQNFL D  ++  + ++        ++EIG G G LT+ LL  L    V+ +
Sbjct: 2   KHIAKKRFGQNFLTDQGVISSLVDAISPKADDLMVEIGPGLGALTKPLLQRLKLLHVVEV 61

Query: 77  EKDQQFFPILKDISSQHPNR------LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++D     I+  + +++  R      + I   DALK DF+   ++   +R+  NLPYNI 
Sbjct: 62  DRD-----IIAWMQAEYGKRAYASSAISIHNADALKFDFK---SLGDNLRVTGNLPYNIS 113

Query: 131 TRLLFNW---ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           T +LF+    +SA T       +  + QKEV ER+ A  ++  YGRLSV+  +R +   +
Sbjct: 114 TPILFHLLDNVSAIT------DMHFMLQKEVVERMVASPSTAAYGRLSVMLQYRLQMDYL 167

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG 245
             + P  F P+PKV S  +  +PH + P     E++  K+   AFG+RRKTLR +LK L 
Sbjct: 168 ITVPPEAFEPAPKVESAFVRCVPHAVLPFVAKDEAIFAKVVLAAFGQRRKTLRNTLKELL 227

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            +       I++  RAENL++ DF  I N L+
Sbjct: 228 NDEGFTALNIDSQQRAENLAVSDFVAIANYLS 259


>gi|320179612|gb|EFW54561.1| Dimethyladenosine transferase [Shigella boydii ATCC 9905]
 gi|333010543|gb|EGK29976.1| dimethyladenosine transferase [Shigella flexneri VA-6]
          Length = 249

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 127/240 (52%), Gaps = 18/240 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
           G  ++EIG G   LT+    +G R  ++ VIE D+     L+     HP    +L I Q 
Sbjct: 14  GQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLAARLQT----HPFLGPKLTIYQQ 66

Query: 103 DALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
           DA+  +F +    +  P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R
Sbjct: 67  DAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNR 123

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-L 219
           + A  NS  YGRLSV+  +      + ++ P  F P PKV S V+  +PH   P P   +
Sbjct: 124 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 183

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             L +IT EAF +RRKT+R SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 184 RVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 243


>gi|289423351|ref|ZP_06425159.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L]
 gi|289156282|gb|EFD04939.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L]
          Length = 293

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 141/265 (53%), Gaps = 16/265 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL+D NI+ KI + S +  G  VIE+G G G LT+ L +  + KV+V+E D++ 
Sbjct: 24  KSLGQNFLIDDNIIDKIVDGSLAGQGDKVIEVGPGIGTLTRELAS-RSEKVMVVEIDKKL 82

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWIS 139
            PIL D  S   N + I+ +D +K D +   + +    P++++ANLPY I T ++  ++ 
Sbjct: 83  IPILGDTLSDFDN-VTIVNEDIMKADIKDLIDKNLDGGPVKLVANLPYYITTPIIMRFLE 141

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        + ++ QKEV ER+ A      +G LSV   +     ++  +  H+F P P
Sbjct: 142 EDIN---VTDIVVMVQKEVAERMNANPGKKDFGALSVAVQFYCDTEIVAKVPRHLFVPQP 198

Query: 200 KVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN------LLH 251
            V S VI     P         +   KI + +FG+RRKTL  SL  +G  +      +L 
Sbjct: 199 NVDSIVIALRVRPERKYKVEDEDLFFKIVKASFGQRRKTLLNSLTSMGILDKTDISAVLS 258

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
            AGI+   R E LS+E+F R+++ +
Sbjct: 259 VAGIDEKRRGETLSLEEFARLSDCM 283


>gi|125718907|ref|YP_001036040.1| dimethyladenosine transferase [Streptococcus sanguinis SK36]
 gi|166221709|sp|A3CQN5|RSMA_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|125498824|gb|ABN45490.1| Dimethyladenosine transferase, putative [Streptococcus sanguinis
           SK36]
          Length = 290

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 146/281 (51%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFLAE-SA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++  D LKV+  ++     N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVNLAQYIAEFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I  ++  PF E   ++ Q+EV +RI+AQ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLI--ESGIPFSE-FVVMMQREVADRISAQPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L   
Sbjct: 185 AFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRRKTLWNNLTSY 244

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G++          L +A +  ++R E LS+E+F  + + L
Sbjct: 245 FGKSEETKGKLTAALERAELSPSVRGEALSLEEFACLADAL 285


>gi|167626494|ref|YP_001676994.1| dimethyladenosine transferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189028809|sp|B0TZ54|RSMA_FRAP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|167596495|gb|ABZ86493.1| dimethyladenosine transferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 262

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/265 (35%), Positives = 139/265 (52%), Gaps = 9/265 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ +L   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDIVLEIGPGLGALTRYILKC-SDNVNV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134
           +E D      L   + Q     ++  +D LK D +    +    +++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLLQ-NCQKYGEPKVFNEDFLKFDLDIVRADSQQKLKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +Q NS  YGRLSV+  +    +M+ +I P V
Sbjct: 120 FKVIEQSDK---IIDAHFMLQKEVVERIISQPNSKTYGRLSVILQYHFDCSMILNIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLL--H 251
           F+P PKV S ++   P  N +        + I +++F +RRKTL  +LK +  E  +  +
Sbjct: 177 FYPQPKVDSAILRLKPKANKLVINDYIFFENIVKQSFAQRRKTLHNNLKGILKELDIDPN 236

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
              ++T LRAENLS+EDF  + N L
Sbjct: 237 TLPVDTKLRAENLSMEDFVSLVNFL 261


>gi|220927630|ref|YP_002504539.1| dimethyladenosine transferase [Clostridium cellulolyticum H10]
 gi|219997958|gb|ACL74559.1| dimethyladenosine transferase [Clostridium cellulolyticum H10]
          Length = 290

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 151/292 (51%), Gaps = 25/292 (8%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M  NN S     I+  +++   K +GQNFL D +++K+I ++S        IEIG G G+
Sbjct: 1   MIKNNTSE----IIKKHRLKLTKALGQNFLTDFSVVKRIVDASDIDKDTLAIEIGPGVGS 56

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115
           +T+ L    A  V  IE D++  P L D  S + N + II +D +K D +   N      
Sbjct: 57  MTRELAARSA-GVAAIEIDKRLIPALNDNLSDYSN-VSIINEDIMKADIDTIINKYREVY 114

Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
            +  ++++ANLPY I T ++  ++         + +  + Q+EV ER+ +   +  YG L
Sbjct: 115 NAKSVKVVANLPYYITTPIIMRFLEEVKG---VDKMVFMVQREVAERMVSGPGTKDYGAL 171

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGK 232
           SV   + +K  ++FD+ PH F P P+V ST+I   I    P+     +L  KI + +FG+
Sbjct: 172 SVAVQFYSKPEIIFDVPPHCFIPQPEVHSTIIGLDILSEPPVEVIDRNLYFKIVKASFGQ 231

Query: 233 RRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           RRKTL  +L   G  N        +L + G   N+R E L++  F +++N++
Sbjct: 232 RRKTLVNALSNSGFFNKTKEQIKQILKEMGKSENIRGEVLTVAQFAQLSNLM 283


>gi|78046456|ref|YP_362631.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|119365862|sp|Q3BX82|RSMA_XANC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78034886|emb|CAJ22531.1| Dimethyladenosine transferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 262

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 12/265 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKV 73
           S +    KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL   GA  +
Sbjct: 3   SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRRHGA--L 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D+     L ++++     L II  D L VDF    N  +PIR++ NLPYNI + +
Sbjct: 61  TVIEFDRDLIAPLTEVAAPI-GALSIIHRDVLSVDFTALAN-GTPIRLVGNLPYNISSPI 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +           +  + QKEV +R+ A   S  YGRLSV+     + T +F + P 
Sbjct: 119 LFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250
            F P PKV S V+  +P  +P    +   ++   + +  FG+RRKTLR +L  +      
Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVQINDRRRFADVVRAGFGQRRKTLRNALSTICEPAHF 234

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             A +  + RAE L + DF R+ N+
Sbjct: 235 DAAQVRPDARAEQLEVADFIRLANV 259


>gi|126643017|ref|YP_001086001.1| S-adenosylmethionine-6-N'N'-adenosyl [Acinetobacter baumannii ATCC
           17978]
          Length = 187

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 107/184 (58%), Gaps = 5/184 (2%)

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
           HP RL I++ DALK DF +      P+R++ NLPYNI T LLF+ +   +     + +  
Sbjct: 3   HPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHLLEFGSQ---VKDMHF 59

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH- 211
           + QKEV ERITA+ N+  YGRLSV+  +  + T +F++    F P PKVTS V   +P+ 
Sbjct: 60  MLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKVTSAVFRLVPYE 119

Query: 212 LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFC 270
             PI    E +L ++    F +RRKTLR SLK +  E+   +AG++   R E L++ +F 
Sbjct: 120 QKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMARPETLTLAEFV 179

Query: 271 RITN 274
            + +
Sbjct: 180 ALAD 183


>gi|261209782|ref|ZP_05924087.1| dimethyladenosine transferase [Vibrio sp. RC341]
 gi|260841172|gb|EEX67685.1| dimethyladenosine transferase [Vibrio sp. RC341]
          Length = 271

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 133/260 (51%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   GI 
Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLECLDRVVREGFNQRRKTVRNCYKGLAEPETLEALGIN 243

Query: 257 TNLRAENLSIEDFCRITNIL 276
             +R ENL++  F  + N L
Sbjct: 244 PGMRPENLTLAQFVALANWL 263


>gi|170043732|ref|XP_001849529.1| mitochondrial dimethyladenosine transferase 1 [Culex
           quinquefasciatus]
 gi|167867055|gb|EDS30438.1| mitochondrial dimethyladenosine transferase 1 [Culex
           quinquefasciatus]
          Length = 345

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 148/291 (50%), Gaps = 25/291 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ ++  YK+   K + QNFL+D  +  KI +++G++    V+E+G GPG++T+ ++  
Sbjct: 22  TIRDLVRLYKLRAIKQLSQNFLMDERLTNKIVKAAGNITDHHVLEVGPGPGSITRSIIRK 81

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFF---------NISS 117
             R ++V+EKD++F P L+ +S       R++I++ D L+   E+ F         +  +
Sbjct: 82  APRHLVVVEKDRRFLPTLELLSEASAGFLRMDIVRGDILQFQTEQAFPDCPRQEWHDKRA 141

Query: 118 PIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           P+ II NLP+ I TRLL NW+      +  W     SLTL FQKEV ERI A   S    
Sbjct: 142 PVHIIGNLPFAISTRLLINWLHEMSTRSGAWSFGRSSLTLTFQKEVAERIVAPILSERRC 201

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFG 231
           RLSV+    ++  + F I    F P P V   V+  +P  NP+       ++K+ +  F 
Sbjct: 202 RLSVMNQIWSRPELKFIIPGKAFVPKPDVDVGVVTIVPLKNPLTTVPFPVVEKVVRHIFS 261

Query: 232 KRRKTLRQSLKRLGGENLLHQ--------AGIETNLRAENLSIEDFCRITN 274
            R+K  R+ +  L    L  +        A ++   R+  LS E+  RI  
Sbjct: 262 MRQKYCRRGVANLYPPELRDELTELTFKIADVDPLARSFQLSTEECLRIVE 312


>gi|322419457|ref|YP_004198680.1| dimethyladenosine transferase [Geobacter sp. M18]
 gi|320125844|gb|ADW13404.1| dimethyladenosine transferase [Geobacter sp. M18]
          Length = 277

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 143/278 (51%), Gaps = 17/278 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +I  KK  GQNFL+D N+L +I           ++E+G G G L+++L   GAR  + +E
Sbjct: 5   RIKAKKEFGQNFLVDDNVLTRIVSCVAPGTEDCILEVGPGRGALSRLLAASGAR-FVAVE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR---IIANLPYNIGTRLL 134
            D+   P L    + + +R+EI   D L+VD  +     +P R   + ANLPYNI +++L
Sbjct: 64  WDRDLIPFLNSEFAGN-DRVEIGHGDILRVDLHQILTTRAPGRKWKVAANLPYNISSQVL 122

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F ++        +E L L+ QKEVG+R+TA      YG L+VL          F + P  
Sbjct: 123 FKFMED---CDLFEGLVLMLQKEVGDRLTAPPGCKDYGALTVLLRLHFDIRREFIVKPGS 179

Query: 195 FFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGEN---- 248
           F P PKV S V+ F P   P +    E L +++ + AF +RRKTL  SL+  G ++    
Sbjct: 180 FRPIPKVDSAVLSFTPLPAPRVEVGDEELFRRLVKGAFNQRRKTLLNSLRSAGFDDSDGS 239

Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
               L +  I+   R E LS+E+F  ++  L   + +A
Sbjct: 240 LSAALSRCNIDGLRRGETLSLEEFAALSRDLYPGKSLA 277


>gi|126311223|ref|XP_001381331.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 344

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 139/290 (47%), Gaps = 23/290 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  I+  + +  +K + QNFLLDL +  KI   +G L    V E+G GPG  T+ +L  
Sbjct: 17  TVGEIIKLFGLRAQKQLSQNFLLDLRLTDKIVRKTGDLKNAHVYEVGPGPGAFTRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119
               ++V+EKD +F P L+ +S   P +L I+  D L    E+ F         +    +
Sbjct: 77  QVADLLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVERMFPEHLKRRWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNW---ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W   IS    P  +    +TL FQKEV ER+TA   +    RL
Sbjct: 137 YIIGNLPFSVSTPLIIKWLENISKRDGPFVYGRTQMTLTFQKEVAERLTAGTGNKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++  +  K    F I    F P P+V   V+HF P + P I    + ++K+ Q  F  R
Sbjct: 197 SIMAQYLCKVDNSFIIPGRAFVPKPEVDVGVVHFTPLVQPQINQPFKLVEKVVQSTFQFR 256

Query: 234 RKTLR--------QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           RK           Q+ +    E +L  A ++  LR   LSI  F  + ++
Sbjct: 257 RKYCHHGIGILFPQAERSKNTEKMLMLADVDPTLRPSQLSILHFKNLCDV 306


>gi|256820807|ref|YP_003142086.1| dimethyladenosine transferase [Capnocytophaga ochracea DSM 7271]
 gi|256582390|gb|ACU93525.1| dimethyladenosine transferase [Capnocytophaga ochracea DSM 7271]
          Length = 257

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 142/260 (54%), Gaps = 12/260 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL DLNI +KIA++    +   V+EIGAG G LTQ LL  G   V ++E D++
Sbjct: 7   KKHLGQHFLKDLNIAQKIADTLSLKNYKKVVEIGAGMGVLTQFLLKKGV-DVHIVEIDKE 65

Query: 82  FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               L+   + +P  R +II DD LK D   +  ++ P  II N PYNI T+++F  +  
Sbjct: 66  SVDYLE---ANYPALRGKIIADDFLKYDVAGY--LAEPFAIIGNFPYNISTQIVFKLLEL 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             +       + +FQKEV ERI   + S  YG LSVL     + + +F +S  VF P PK
Sbjct: 121 REY---VSEFSGMFQKEVAERICEHEGSKTYGILSVLVQAFYETSYLFTVSESVFNPPPK 177

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI  +   +    C E L   + + AF +RRKTLR SLK L  +  L Q  I  + 
Sbjct: 178 VKSGVIRLVRKAHFHLDCDERLFFTVVKTAFNQRRKTLRNSLKPLLTDENLKQDPI-FDK 236

Query: 260 RAENLSIEDFCRITNILTDN 279
           R E L  ++F  IT  +++ 
Sbjct: 237 RPEQLPWQEFVFITKKISNQ 256


>gi|237804701|ref|YP_002888855.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273001|emb|CAX09913.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 277

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 140/265 (52%), Gaps = 17/265 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++LL+ GA  VI +EKD  
Sbjct: 21  KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQGA-NVIALEKD-- 77

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139
             P+ ++  SQ P  +EI   DA K       +       RI+ANLPY+I T LL  +  
Sbjct: 78  --PMFEESLSQLPMDIEIT--DACKYPLTSLEDKGWKGKGRIVANLPYHITTPLLTKFFL 133

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P  W+++T++ Q EV  RITA+     Y  L+V   +       F +SP+ F+P P
Sbjct: 134 E--CPYRWKTVTVMIQDEVARRITAKPGDKDYSSLTVFLSFFADVQYAFKVSPNCFYPKP 191

Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253
            V S V+H   H         +E    +T+ AFG+RRK L  SLK L  ++    +L Q 
Sbjct: 192 SVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQL 251

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G     R E + +E++ +I ++L D
Sbjct: 252 GFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|51894384|ref|YP_077075.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM
           14863]
 gi|62900510|sp|Q67JB9|RSMA_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|51858073|dbj|BAD42231.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM
           14863]
          Length = 285

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 141/278 (50%), Gaps = 14/278 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +LK +++ Y + P+  +GQNFL+D  +L  I  ++G      V+EIG G G LTQ L   
Sbjct: 8   ALKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGTLTQRLAAK 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRIIAN 124
             R V+ +E D+    +L D   +  + +E+I  DA ++D  K            +++AN
Sbjct: 68  AGR-VVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLHKLLGERLAPGQKAKVVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T L+   +  +  P     + ++ QKEV +R+ +   S  YG LSV   + T+ 
Sbjct: 127 LPYYITTPLVMRLLE-EELP--LSHVVVMVQKEVADRMVSPPGSKAYGALSVAVQYYTEP 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            ++  +S   F P P+V S V+        P+    E+  ++ + AFG+RRK+L  +L  
Sbjct: 184 RIVLRVSRASFMPQPEVDSAVVSLRYRERPPVDAPPEAFFRVVRAAFGQRRKSLVNALTS 243

Query: 244 LGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276
           LG E       L  AGI+   R E+LS+E+F  +   L
Sbjct: 244 LGVEKAAVHAALEAAGIDPGRRGESLSLEEFAAVARTL 281


>gi|315223958|ref|ZP_07865802.1| dimethyladenosine transferase [Capnocytophaga ochracea F0287]
 gi|314946062|gb|EFS98067.1| dimethyladenosine transferase [Capnocytophaga ochracea F0287]
          Length = 257

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 142/260 (54%), Gaps = 12/260 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL DLNI +KIA++    +   V+EIGAG G LTQ LL      V ++E D++
Sbjct: 7   KKHLGQHFLKDLNIAQKIADTLSLKNYKKVVEIGAGMGVLTQFLLKKDV-DVHIVEIDKE 65

Query: 82  FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               L+   + +P  R +II +D LK D   +  ++ P  II N PYNI T+++F  +  
Sbjct: 66  SVAYLE---ANYPALRGKIIANDFLKYDVAGY--LAEPFAIIGNFPYNISTQIVFKLLEL 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             + P     + +FQKEV ERI   + S  YG LSVL     + + +F +S  VF P PK
Sbjct: 121 REYVP---EFSGMFQKEVAERICEHEGSKTYGILSVLVQAFYETSYLFTVSESVFNPPPK 177

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI  +   +    C E L   + + AF +RRKTLR SLK L  +  L Q  I  + 
Sbjct: 178 VKSGVIRLVRKTDFHLDCDEGLFFTVVKTAFNQRRKTLRNSLKSLLTDENLKQDPI-FDK 236

Query: 260 RAENLSIEDFCRITNILTDN 279
           R E L  ++F  IT  +++ 
Sbjct: 237 RPEQLPWQEFVFITKKISNQ 256


>gi|313905501|ref|ZP_07838865.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6]
 gi|313469685|gb|EFR65023.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6]
          Length = 299

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 152/286 (53%), Gaps = 19/286 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N +++++ IL  Y    +K  GQNFL+D ++L+KI  ++   +   V+EIG G G LT
Sbjct: 14  LGNPANTIE-ILQKYGFRFQKKFGQNFLIDPHVLEKIVRAADISEDDCVMEIGPGIGTLT 72

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    AR+V  +E D+   PIL + + +  + + +I +D LKVD ++     N   P+
Sbjct: 73  QYLARY-AREVFAVEIDKNLIPILTEDTLKDWDNVTVINEDCLKVDMKQLVEEHNGGKPV 131

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T +L   +      PF ES+T++ QKEV +R+ A   S  YG LS+   
Sbjct: 132 KVVANLPYYITTPILMELLEKHV--PF-ESITVMVQKEVADRMQAGPGSKDYGALSLAVQ 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLK-KITQEAFGKRRKT 236
           + T   +M ++ P+ F P P V S VI        N +    E L  ++ + +F +RRKT
Sbjct: 189 YYTVPEIMANVPPNCFIPRPNVGSAVIRLKGRTEENRVQVQDEHLMFRLIRASFAQRRKT 248

Query: 237 LRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           L   L+        +   E ++   G+   +R E L++E F ++ +
Sbjct: 249 LMNGLRNSQELDFSKEEIEKVIQDCGLPAAVRGEALTLEQFAQLAD 294


>gi|260893941|ref|YP_003240038.1| dimethyladenosine transferase [Ammonifex degensii KC4]
 gi|260866082|gb|ACX53188.1| dimethyladenosine transferase [Ammonifex degensii KC4]
          Length = 297

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 152/285 (53%), Gaps = 21/285 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++K +L+ + I P+K  GQ+FL+   +L KI E++      TV+E+G G G LT  LL  
Sbjct: 13  AVKAVLAEWGIKPRKRWGQHFLVRREVLAKIVEAAELSPADTVVEVGPGLGVLTARLLE- 71

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS---PIRIIANL 125
            A KV+ IE D +    L+    +HP RL +++ DAL+ DF+     +    P +++ANL
Sbjct: 72  KAGKVVAIELDPRLEAFLRARFGEHP-RLTLVRGDALECDFDLLVQEARGFFPYKVVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWE--SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           PY + + LL   +++      W    L L+ QKEV  R+ A   +  YG LS+L  +RT 
Sbjct: 131 PYYLTSPLLLRLLTSP-----WRISLLVLMLQKEVALRLLASPGTKEYGSLSLLVQYRTL 185

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSL 241
            +++  +S H F+P P+V S V+       P +    ES+   + + AF KRRKTL  +L
Sbjct: 186 PSLVTFVSRHSFYPPPEVDSAVVRLEVRTRPSVEVGDESVFFGVVRAAFAKRRKTLLNAL 245

Query: 242 --KRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
               LG      + LL  AGI+   R E LS+E+F RI   L  N
Sbjct: 246 TSSSLGLSKEEWQRLLLDAGIDPGRRGETLSLEEFARIARRLQSN 290


>gi|296329543|ref|ZP_06872029.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305672740|ref|YP_003864411.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153286|gb|EFG94149.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305410983|gb|ADM36101.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 292

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 144/280 (51%), Gaps = 22/280 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL +I + +   +   VIEIG G G LT+ +    A
Sbjct: 12  KEILKKYCFSFKKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQIAK-RA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           +KV+  E DQ+  PILKD  S + N + +I  D LK D     E+ F     I ++ANLP
Sbjct: 71  KKVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +  P   + + ++ QKEV ER+ A  +S  YG LS+   + T+A  
Sbjct: 130 YYVTTPIIMKLLE-EHLP--LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAKT 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTL------ 237
           +  +   VF P P V S VI  I    P    +E+     ++ + +F +RRKTL      
Sbjct: 187 VMTVPKTVFVPQPNVDSAVIRLILRDGP-AVDVENEAFFFQLIKASFAQRRKTLLNNLVN 245

Query: 238 ---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
                  ++   E +L +  I+   R E+LSIE+F  ++N
Sbjct: 246 NLPEGKAQKSTIEQVLEKTNIDGKRRGESLSIEEFAALSN 285


>gi|323493620|ref|ZP_08098741.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio brasiliensis LMG 20546]
 gi|323312143|gb|EGA65286.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio brasiliensis LMG 20546]
          Length = 268

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 136/264 (51%), Gaps = 13/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GKEVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP+   +L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPDLGDKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+ N P P   L+ L ++ +E F +RRKT+R   K L     L + G+ 
Sbjct: 184 PKVDSAVVRLVPYENLPHPATSLKWLDRVCREGFNQRRKTVRNCYKALLSTETLEELGVN 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
             +R ENL++E F  + N L  N 
Sbjct: 244 PGMRPENLTLEQFVAMANWLDANH 267


>gi|323438725|gb|EGA96465.1| dimethyladenosine transferase [Staphylococcus aureus O11]
 gi|323442063|gb|EGA99698.1| dimethyladenosine transferase [Staphylococcus aureus O46]
          Length = 303

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 20/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L    A
Sbjct: 20  RALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQL-ARHA 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           ++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++ANLP
Sbjct: 79  KRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVVANLP 137

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L N +  D   P  +   ++ QKEVGER+ A+  S  YG LS++  + T+ + 
Sbjct: 138 YYITTPILLNLMQQDI--PI-DGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYTETSK 194

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  + +  
Sbjct: 195 VLTVPKSVFMPPPNVDSIVVKQMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNNYQNY 254

Query: 245 GGENLLH---------QAGIETNLRAENLSIEDFCRI 272
             +   H         QAGI+   R E LSI+DF ++
Sbjct: 255 FKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKL 291


>gi|297566999|ref|YP_003685971.1| dimethyladenosine transferase [Meiothermus silvanus DSM 9946]
 gi|296851448|gb|ADH64463.1| dimethyladenosine transferase [Meiothermus silvanus DSM 9946]
          Length = 276

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 142/277 (51%), Gaps = 18/277 (6%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
             S +++ +L  Y +   K  GQNFL++   L++I  + G   G  V E+G G G LT+ 
Sbjct: 11  TSSRAVRELLERYGLRADKRFGQNFLVEAGYLQRIVAAVGFKPGERVYEVGPGLGTLTRA 70

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           L   GA KV  +E D++  P+  +  +  P  +E+I  DAL+ D+    +I        N
Sbjct: 71  LAEAGA-KVTAVEMDRRLEPVHAETLAHLP--VEVIWGDALEFDWR---SIPPGSLFAGN 124

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI T L+   + +  +      + +L QKEV  R+ A   +P YG LS+     ++A
Sbjct: 125 LPYNIATPLITKLLLSRRF----RCIVVLVQKEVALRMVAAPGTPEYGVLSLRIQHHSQA 180

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
             +FD+ P VF P PKVTS+++   P+ NP       L ++ + AF +RRKTL  +LK  
Sbjct: 181 RRLFDLPPGVFLPPPKVTSSLVRLEPNANPDD---PELFRLIEAAFAQRRKTLSNALKAA 237

Query: 245 -----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                     L Q G+   +R E LS+E F  + ++L
Sbjct: 238 EYPPQAVTAALVQMGLPPQIRGEALSLEQFRTLHSLL 274


>gi|81429267|ref|YP_396268.1| dimethyladenosine transferase [Lactobacillus sakei subsp. sakei
           23K]
 gi|119365029|sp|Q38V22|RSMA_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78610910|emb|CAI55962.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N,
           N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 297

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 20/284 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL ++ ILK+I E+        VIEIG G G+LT+ +    A
Sbjct: 11  KKILKRYGFKFKKSLGQNFLTNITILKQIVEAGEITKDDDVIEIGPGIGSLTEQI-ARKA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  P+LKD +  H + + ++  D L+ D      K F+    ++I+ANLP
Sbjct: 70  HQVLSFEIDDRLIPVLKD-TLNHYHNVTVLNQDILEADLPTLIAKHFDGQHNLKIVANLP 128

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++ + + A    P  + + L+ QKEV ERI A   S  YG LS+     ++  +
Sbjct: 129 YYITTPIMLHLLEAGL--PI-DRMVLMMQKEVAERIDAAPGSKAYGSLSIAVQLHSEVKL 185

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +    F P P V S ++ F+    P+          ++ + AF +RRKTL  +L+  
Sbjct: 186 AFIVPKTAFVPQPNVDSAIVEFVGRQEPLVTVQNQQLFDQLVRGAFAQRRKTLWNNLQNQ 245

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            G+           L QA I  + RAE LSI+ F ++++ L + 
Sbjct: 246 FGKQEEVKAGLVAALDQADIAPSTRAEQLSIQQFAQLSDCLNEQ 289


>gi|260775525|ref|ZP_05884422.1| dimethyladenosine transferase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608706|gb|EEX34871.1| dimethyladenosine transferase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 268

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 13/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+     HP    +L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLR----THPELAEKLTIHEGDAMRFDFTQLVKPNNRLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 E---YHKDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P P   L  L ++ ++ F +RRKT+R   K L    +L Q GI 
Sbjct: 184 PKVDSAVVRLVPYETLPYPATSLNWLDRVCRDGFNQRRKTVRNCYKSLVNAEILEQLGIN 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
             +R ENL++E F  + N L  N 
Sbjct: 244 PGMRPENLTLEQFVDLANWLDANH 267


>gi|332140204|ref|YP_004425942.1| dimethyladenosine transferase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550226|gb|AEA96944.1| dimethyladenosine transferase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 275

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 138/277 (49%), Gaps = 22/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT L H     +K  GQNFL D  ++ KI  +    +   ++EIG G G LT  +     
Sbjct: 3   KTHLGHTA---RKRFGQNFLHDDYVIGKIVAAIAPKNEQNLVEIGPGLGALTDPVCE-EV 58

Query: 71  RKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFN----ISSPIRIIA 123
             + VIE D+     L+     HP    +L +I+ DA+ +DF             +R+  
Sbjct: 59  DALTVIELDRDLAKRLR----HHPFNGEKLTVIEQDAMTMDFGALSKEMPLKDKKLRVFG 114

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYNI T L+F+           E +  + QKEV  R+ A   S +YGRLSV+  +   
Sbjct: 115 NLPYNISTPLMFHLFDHAHC---IEDMHFMLQKEVVNRLAAGPGSKNYGRLSVMAQYYCH 171

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQS 240
              + ++ P  F P PKV S V+  +PH +P P     + +L+++  +AF +RRKT+R S
Sbjct: 172 VIPVLNVPPGAFKPPPKVDSAVVKLVPHQSP-PVDVVSVSTLERVCAQAFNQRRKTIRNS 230

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LK    E  + + GI+   RAE LS+ DF  I N ++
Sbjct: 231 LKDSLSEEEIRELGIDPTCRAEVLSLNDFATIANAVS 267


>gi|315651949|ref|ZP_07904951.1| dimethyladenosine transferase [Eubacterium saburreum DSM 3986]
 gi|315485778|gb|EFU76158.1| dimethyladenosine transferase [Eubacterium saburreum DSM 3986]
          Length = 297

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 143/283 (50%), Gaps = 22/283 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y    +K  GQNFL+D ++L KI   SG       IEIG G G LTQ L  + A+ 
Sbjct: 20  IIKKYDFNFQKKFGQNFLIDTHVLDKICSESGLGKNDLAIEIGPGIGALTQYL-AITAKA 78

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-------SPIRIIANL 125
           V+ +E D+   PIL D    + N  E+I  D LKVD EK  +           IRIIANL
Sbjct: 79  VVAVEIDKNLLPILGDTLKDYKNT-ELINADFLKVDLEKLIDECIQKYGEFDNIRIIANL 137

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T ++ N + + T     +S+T++ QKEV +R+ A   S +YG LS+   + +   
Sbjct: 138 PYYITTPIIMNVLESHTH---IDSITVMIQKEVADRMQAAPGSKNYGALSLAVQYYSDPY 194

Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243
           ++  +  + F P PKV S+VI   I    PI    E L  +I +  F +RRKTL  SL  
Sbjct: 195 VVAFVPQNCFIPRPKVGSSVIRLDIYKDKPIKTVNEKLMFQIIRAGFNQRRKTLVNSLIN 254

Query: 244 LGG-----ENLLHQ---AGIETNLRAENLSIEDFCRITNILTD 278
             G       ++H     G    +R E LS+++F ++   L +
Sbjct: 255 FEGLQFSKNKIIHALSLLGKSEKIRGEALSLDEFAQLAEYLQE 297


>gi|154509599|ref|ZP_02045241.1| hypothetical protein ACTODO_02132 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799233|gb|EDN81653.1| hypothetical protein ACTODO_02132 [Actinomyces odontolyticus ATCC
           17982]
          Length = 328

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 138/278 (49%), Gaps = 21/278 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K I     I P K +GQNF+ D   ++KI  + G   G  VIE+G G G+LT  LL +G
Sbjct: 37  VKAISEALGIRPTKVLGQNFVHDAGTVRKIVAAGGVEAGDEVIEVGPGLGSLTLALLEVG 96

Query: 70  ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIA 123
           AR V  +E D      L    +   S+  +RL ++  DA ++     F +   +P +++A
Sbjct: 97  AR-VRAVEIDPTLAAALPQTVRARMSEAADRLHVVTMDATEISGIDDFGVDWPAPTKLVA 155

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L N + A    P  + + ++ Q EV +R+ A   S  YG  SV   W   
Sbjct: 156 NLPYNVAVPVLLNMLEAF---PSVQGVVVMVQAEVADRLAAGPGSRTYGVPSVKASWYGS 212

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE----AFGKRRKTLRQ 239
                 I   VF+P P V S ++     L   P   + L++ T E    AFG+RRKTLR 
Sbjct: 213 VERAGTIGRSVFWPVPGVDSALVRLT-RLE-TPRGDDELRRATFEATDVAFGQRRKTLRA 270

Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272
           +LK   G     E LL  AGI+   R E LSI++F  +
Sbjct: 271 ALKNWAGGPEASEALLSAAGIDPTRRGETLSIDEFVEL 308


>gi|256545786|ref|ZP_05473142.1| dimethyladenosine transferase [Anaerococcus vaginalis ATCC 51170]
 gi|256398482|gb|EEU12103.1| dimethyladenosine transferase [Anaerococcus vaginalis ATCC 51170]
          Length = 282

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 142/275 (51%), Gaps = 15/275 (5%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            ++KTI   Y     K +GQNFL+D N + KI + S  + G  ++EIG G G ++Q +  
Sbjct: 8   KTIKTIQDLYGFKFSKSLGQNFLVDKNFVDKIIDLS-EVKGENILEIGPGIGTISQEMAK 66

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIA 123
              +K++VIE D+   PIL D   +  N +EII  D LK D +K     F+     ++++
Sbjct: 67  -TCKKLVVIEIDKTLIPILNDNLGEFSN-VEIINADILKTDLKKIAKEKFD-GEDFKVVS 123

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I T ++      D      + +T++ QKEV +R+ A + S  Y  LSV   +  +
Sbjct: 124 NLPYYITTPIIEKLFEEDLS---CKDMTIMVQKEVADRMKADEKSKDYSSLSVFIKYYAE 180

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
               F +   VF P PK+ S V+     L        +L  + +  F KRRKT+  SL  
Sbjct: 181 IIGQFKVPKSVFMPQPKIDSQVLKLNLRLYDENVNTNTLFNVVRAGFNKRRKTILNSLSS 240

Query: 244 -LGGENL---LHQAGIETNLRAENLSIEDFCRITN 274
            +  ENL   L    ++ NLRAENLS++DF +I N
Sbjct: 241 VIEKENLKEILENLSLKENLRAENLSLDDFIKIAN 275


>gi|196005549|ref|XP_002112641.1| hypothetical protein TRIADDRAFT_24833 [Trichoplax adhaerens]
 gi|190584682|gb|EDV24751.1| hypothetical protein TRIADDRAFT_24833 [Trichoplax adhaerens]
          Length = 319

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 152/297 (51%), Gaps = 25/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ ++  + +   K + QNFLL+ NI  KI    G ++   V E+GAGPG LT+ ++  
Sbjct: 9   TIRDLIKLHNLSASKQLSQNFLLNSNITNKIVLLDGGVENHQVCEVGAGPGCLTRSIIAG 68

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSP-I 119
           GA K++ +EKD++F P L  +++    R+ I+  D L  +  K F        N  SP +
Sbjct: 69  GASKIVAVEKDRRFLPALDILANAVDGRMVIVYADILNYEMIKAFDPVDKKAWNDESPKM 128

Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRL 174
           +II NLP++I T LL  W++  +    PF      +TL FQ+EV +RI A+  +    RL
Sbjct: 129 KIIGNLPFSISTPLLIQWLNLISQNAGPFSLGRIKMTLTFQEEVAQRILAEPKTSQRSRL 188

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++T         F I    F P+PKV S V+ F P + P I     +L+ I +  F  R
Sbjct: 189 SIMTQNYCHVKPGFLIKGSSFVPAPKVNSVVLTFTPRITPLIDIDFTTLEVIAKSLFRHR 248

Query: 234 RKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRIT----NILTDNQ 280
           RK + +  K L   +      L  +A ++  LR + LS E+  R+      +L D+Q
Sbjct: 249 RKFVIKGTKYLFPTDVDLSLKLFEEADVDWKLRPQQLSTEEIQRLCAAYKKVLLDHQ 305


>gi|303229693|ref|ZP_07316481.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515818|gb|EFL57772.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a]
          Length = 284

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 141/269 (52%), Gaps = 13/269 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ +I +++   +G  V+EIG G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQGLAQSGA-N 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D +   +L    +Q+ N + I+  D LK+D     N + P +++ANLPY I T 
Sbjct: 74  VTAIELDTRLLEVLDTTLAQYSN-VTIVHGDVLKLDVPSIMN-NEPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + + +   P   E L ++ QKEV  R+ A+  +  YG LSV   + TK  ++ D+ P
Sbjct: 132 IIMSLLES-RLP--IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTKPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246
             F P+P VTS+VI  +     P+    E L  ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFANTMKTTGLSKDR 248

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274
            E LL +A I+   R E  ++++F  + N
Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277


>gi|116618707|ref|YP_819078.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122271093|sp|Q03VR7|RSMA_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116097554|gb|ABJ62705.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 295

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 151/284 (53%), Gaps = 23/284 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ Y +  KK  GQNFL DLN+L  I E++       VIEIG G G LT+  L   A
Sbjct: 14  QAILNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALTEQ-LARSA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           +KV+  E D Q   +L D    + N +++I++D LKVD  K     F  ++ ++I+ANLP
Sbjct: 73  KKVLAFEIDSQMVEVLADTLKPYDN-VKVIENDVLKVDLAKVISEEFGDNAHVKIVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L   + ++     W+++ ++ Q+EV +R+ A   +  YG L++   +  +AT+
Sbjct: 132 YYITTPILIQLLRSNI---NWDNIVVMMQREVADRLNAAVGTKSYGVLTLTIQYFAQATL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKR 243
              +    F PSP V S V+   P L P    +E++ K   + + +F  RRK+L  ++ +
Sbjct: 189 AIKVPASSFNPSPNVDSAVVKLTP-LKP-TTVVENVGKLFGVIKGSFSHRRKSLWNNMLQ 246

Query: 244 LGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
             G++          L  A I+  +RAE L++E F ++   L D
Sbjct: 247 TYGKDAGTKEQLTVALKSAQIDPAIRAERLNLEQFTQLYLALRD 290


>gi|330444319|ref|YP_004377305.1| dimethyladenosine transferase [Chlamydophila pecorum E58]
 gi|328807429|gb|AEB41602.1| dimethyladenosine transferase [Chlamydophila pecorum E58]
          Length = 280

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 142/276 (51%), Gaps = 16/276 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L   L+  +  PKK + QNFL+D NI++KI   S   +G  V+EIG G G LT+ L++ G
Sbjct: 11  LTRFLAEIRESPKKGLSQNFLIDGNIIRKILSESQVQEGEWVLEIGPGFGALTEGLVSSG 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPY 127
           A  VI +EKD +F   L ++   H   LEI   DA     +K   +      R+IANLPY
Sbjct: 71  AH-VIALEKDPKFATTLSELPLSH---LEIT--DARTYPLQKLSELGWEGKGRMIANLPY 124

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I T LL    S    P  W+S+T++ Q EV  RI AQ  +  YG L++   +       
Sbjct: 125 HITTPLLIKIFSEA--PHMWKSVTVMVQDEVARRIIAQPGNKDYGSLTIFLQFFAHVRYA 182

Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +    F+P P+V S V+H  +    P+P    +    +T+ AF +RRK L  +LK L 
Sbjct: 183 FKVRASCFYPQPQVHSAVVHMEVKEHFPLPETVFKDFFTLTRTAFQQRRKYLTNTLKDLF 242

Query: 246 GENL----LHQAGIETNLRAENLSIEDFCRITNILT 277
            + L    L Q  I    R E LS+ED+  +  +L+
Sbjct: 243 PKELLLSALQQLRISDKARPETLSLEDYLALFKLLS 278


>gi|161611309|ref|YP_007394.2| dimethyladenosine transferase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|62900537|sp|Q6ME80|RSMA_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 284

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 150/287 (52%), Gaps = 21/287 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   L+  L+   I PKK + QNFL+D NI++KI  +S    G  V+EIG GPG+LTQ +
Sbjct: 5   KPSELRLFLNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAM 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISS-QHPNR-LEIIQDDALKVDFEKFFNISSPIR--- 120
           L + A  V+ +EKD   F + +++   Q P++ LEI  +D L    E+   + S +R   
Sbjct: 65  LEVEAH-VVAVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEE--ELQSRLRDDQ 118

Query: 121 ---IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
              +IANLPY++ T +L   +        + SLT++ Q+EV  R+TA      Y   ++ 
Sbjct: 119 KAKVIANLPYHLTTPILAEMVVRRK---LFSSLTVMVQEEVARRMTALPGQSDYSSFTIF 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             + +K    F +S + F+P+PKV S ++       P     +   KIT+ AF +RRK L
Sbjct: 176 LNFYSKPRYGFTVSRNCFYPAPKVDSAIVVLELKEPPPNIDAQVFFKITRTAFEQRRKML 235

Query: 238 RQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           R SLK L       N L   G     R E LS+EDF ++ + L  ++
Sbjct: 236 RASLKSLFDPSKISNALEIIGQNPQARPEVLSLEDFIKLYHELYSSE 282


>gi|238758993|ref|ZP_04620164.1| Dimethyladenosine transferase [Yersinia aldovae ATCC 35236]
 gi|238702804|gb|EEP95350.1| Dimethyladenosine transferase [Yersinia aldovae ATCC 35236]
          Length = 232

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 130/235 (55%), Gaps = 18/235 (7%)

Query: 51  VIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDAL 105
           ++EIG G G LT+    + AR   + VIE D+     L    + HP   ++L I Q+DA+
Sbjct: 1   MVEIGPGLGALTE---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQEDAM 53

Query: 106 KVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           K++F +        +R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A
Sbjct: 54  KINFSELAEQAGQSLRVFGNLPYNISTPLMFHLFS---YTNAIHDMHFMLQKEVVNRLVA 110

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESL 222
             NS  YGRL+V+  +      + ++ P  F P+PKV S V+  IPH+N P P   +  L
Sbjct: 111 GPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRML 170

Query: 223 KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            +IT +AF +RRKT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 171 TRITTQAFNQRRKTVRNSLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 225


>gi|54298928|ref|YP_125297.1| dimethyladenosine transferase [Legionella pneumophila str. Paris]
 gi|148361259|ref|YP_001252466.1| dimethyladenosine transferase [Legionella pneumophila str. Corby]
 gi|296108598|ref|YP_003620299.1| dimethyladenosine transferase [Legionella pneumophila 2300/99
           Alcoy]
 gi|62900488|sp|Q5X0V1|RSMA_LEGPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221673|sp|A5IIC0|RSMA_LEGPC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|53752713|emb|CAH14148.1| hypothetical protein lpp2995 [Legionella pneumophila str. Paris]
 gi|148283032|gb|ABQ57120.1| dimethyladenosine transferase [Legionella pneumophila str. Corby]
 gi|295650500|gb|ADG26347.1| dimethyladenosine transferase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 256

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 136/261 (52%), Gaps = 12/261 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79
           P+K  GQNFL D  I+ +I  +   L    ++EIG G G LTQ LL  L     I I+ D
Sbjct: 5   PRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLLQKLNRLTAIEIDTD 64

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            Q +     +S     +L +I  DAL VDF +F      +R++ NLPYNI T LL   + 
Sbjct: 65  LQNYLTRLPVSQ---GKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYLLK 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             T     + +  + QKEV ERI A   +  YGRLSV+  +  +   +FD+ P  F P P
Sbjct: 119 FITC---IDDMHFMLQKEVVERIAATHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPKP 175

Query: 200 KVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S ++   P+ ++P      E L+ I  +AF  RRKTL  +LK +   + L+  GI+ 
Sbjct: 176 KVDSAIVRLTPYRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGIDG 235

Query: 258 NLRAENLSIEDFCRITNILTD 278
             R E +S+ ++ ++   +++
Sbjct: 236 GKRPEQISVAEYVQLAKFISN 256


>gi|15835248|ref|NP_297007.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
 gi|270285420|ref|ZP_06194814.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
 gi|270289434|ref|ZP_06195736.1| dimethyladenosine transferase [Chlamydia muridarum Weiss]
 gi|301336817|ref|ZP_07225019.1| dimethyladenosine transferase [Chlamydia muridarum MopnTet14]
 gi|27151610|sp|Q9PK40|RSMA_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|7190672|gb|AAF39462.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
          Length = 277

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/265 (35%), Positives = 142/265 (53%), Gaps = 17/265 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++L++ GA  VI +EKD  
Sbjct: 21  KKALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFGALSEVLVSQGA-NVIALEKD-- 77

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139
             P+ ++  SQ P  +EI   DA K       +       RI+ANLPY+I T LL  +  
Sbjct: 78  --PMFEESLSQLPIDIEIT--DACKYPLASLDDKGWKGKGRIVANLPYHITTPLLTKFFL 133

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P  W+++T++ Q EV  RITA      Y  L+V   +       F +SP+ F+P P
Sbjct: 134 --ECPNRWKTVTVMIQDEVARRITANPGDKDYSSLTVFLRFFADVQYAFKVSPNCFYPKP 191

Query: 200 KVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQA 253
            V+S V+H   H + P+    ++    +T+ AFG+RRK L  SLK L  ++    +L   
Sbjct: 192 SVSSAVVHMRVHEDFPLSGSEIDEFFALTRAAFGQRRKLLANSLKNLYPKDKVFQVLEHL 251

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G     R E +S+E++ +I  +L D
Sbjct: 252 GFSEKTRPETISLEEYLKIFRLLKD 276


>gi|217967874|ref|YP_002353380.1| dimethyladenosine transferase [Dictyoglomus turgidum DSM 6724]
 gi|217336973|gb|ACK42766.1| dimethyladenosine transferase [Dictyoglomus turgidum DSM 6724]
          Length = 279

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 153/280 (54%), Gaps = 15/280 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +KS  L  IL    I  KK +GQNFL+D NILKKI ++        ++E+G G G 
Sbjct: 1   MDLTSKSK-LIEILRRNNIFLKKSLGQNFLIDKNILKKIIDALEISKEDNILEVGCGVGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT + L   A+KVI +E D++F  IL+++   + N +EI+ +D LK+D  +  N+  P +
Sbjct: 60  LT-LELAKKAKKVIGVEIDKRFKSILEELLKDY-NNVEILFEDVLKLDLSRIINL--PYK 115

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ NLPY I    L  +       P+   + ++ QKE+ ER+T+   S  Y  LS+L   
Sbjct: 116 LVGNLPYYISGSFLGEYFQKG---PYAHLMVIMLQKEMAERLTSSPGSKKYSPLSILLHI 172

Query: 181 RTKATMMFDISPHVFFPSPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
                ++  +SP  FFP+P+V S V  + F P L+ I    E   K+ +E+F +RRK L 
Sbjct: 173 TYSYEIISKVSPSCFFPAPEVESVVLKLKFNPKLDKI-YNKEFFFKLIKESFNQRRKFLL 231

Query: 239 QSLKR----LGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +L+R    +  + +  +  I+  +RAE LS E +  ++N
Sbjct: 232 NNLERAFPSIDWKYVFTELNIDGKIRAEELSPEGYITLSN 271


>gi|325848863|ref|ZP_08170373.1| dimethyladenosine transferase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480507|gb|EGC83569.1| dimethyladenosine transferase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 282

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/274 (33%), Positives = 143/274 (52%), Gaps = 13/274 (4%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            ++K I   Y     K +GQNFL+D N + KI + S  + G  ++EIG G G ++Q +  
Sbjct: 8   KTIKLIQDLYGFKFTKSLGQNFLVDKNFVDKIIDLS-EVSGENILEIGPGIGTISQEMAK 66

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NIS-SPIRIIAN 124
              +K++VIE D+   PILKD   +  N ++II  D LK D +K    N S    ++++N
Sbjct: 67  -TCKKLVVIEIDKTLIPILKDNLGEFSN-VDIINADILKTDLKKIIKENFSGEDFKVVSN 124

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T ++      D  P   + +T++ QKEV +R+ A +    Y  LSV   + ++ 
Sbjct: 125 LPYYITTPIIEKLFEED-LP--CKDMTIMVQKEVADRMKADEKEKDYSSLSVFIKYYSEI 181

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL--- 241
           T  F +   VF P PK+ S V+     L      + SL  I +  F KRRKT+  SL   
Sbjct: 182 TGQFKVPKSVFMPQPKIDSQVLKLNLRLYDEDVDVNSLFNIVRAGFNKRRKTILNSLSSV 241

Query: 242 -KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            ++   + +     ++ NLRAENLS++DF  I N
Sbjct: 242 IEKEDLKKIFENLSLKENLRAENLSLDDFINIAN 275


>gi|293189141|ref|ZP_06607867.1| dimethyladenosine transferase [Actinomyces odontolyticus F0309]
 gi|292821986|gb|EFF80919.1| dimethyladenosine transferase [Actinomyces odontolyticus F0309]
          Length = 328

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 21/278 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K I     I P K +GQNF+ D   ++KI  + G   G  V+E+G G G+LT  LL +G
Sbjct: 37  VKAISEALGIRPTKVLGQNFVHDAGTVRKIVAAGGVEAGDEVVEVGPGLGSLTLALLEVG 96

Query: 70  ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIA 123
           AR V  +E D      L    +   S+  +RL ++  DA ++     F +   +P +++A
Sbjct: 97  AR-VRAVEIDPTLAAALPQTVRARMSEAADRLHVVTMDATEISGIDDFGVDWPAPTKLVA 155

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L N + A    P  + + ++ Q EV +R+ A   S  YG  SV   W   
Sbjct: 156 NLPYNVAVPVLLNMLEAF---PSVQGVVVMVQAEVADRLAAGPGSRTYGVPSVKASWYGS 212

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE----AFGKRRKTLRQ 239
                 I   VF+P P V S ++     L   P   + L++ T E    AFG+RRKTLR 
Sbjct: 213 VERAGTIGRSVFWPVPGVDSALVRLT-RLE-TPRGDDELRRATFEVTDVAFGQRRKTLRA 270

Query: 240 SLKR-LGG----ENLLHQAGIETNLRAENLSIEDFCRI 272
           +LK  +GG    E LL  AGI+   R E LSI++F  +
Sbjct: 271 ALKNWVGGPEASEALLSAAGIDPTRRGETLSIDEFVEL 308


>gi|326202941|ref|ZP_08192808.1| dimethyladenosine transferase [Clostridium papyrosolvens DSM 2782]
 gi|325987018|gb|EGD47847.1| dimethyladenosine transferase [Clostridium papyrosolvens DSM 2782]
          Length = 285

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 153/293 (52%), Gaps = 27/293 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M  NN S     I+  + +   K +GQNFL D  ++++I ++S        IEIG G G+
Sbjct: 1   MIKNNTSE----IIKKHGLKLTKALGQNFLTDFGVVQRIVDASDIDKDTLAIEIGPGVGS 56

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-------FEKFF 113
           +T+ L    A  V  IE D++  P L D  S + N + II +D +K D       +++ +
Sbjct: 57  MTRELAERSA-GVAAIEIDKRLIPALNDNLSDYSN-VSIINEDIMKADIDAIIKKYKELY 114

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
           N  S ++++ANLPY I T ++  ++         + +  + QKEV ER+ +   +  YG 
Sbjct: 115 NAKS-VKVVANLPYYITTPIIMRFLEEVKG---VDKMVFMVQKEVAERMVSGPGTKDYGA 170

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFG 231
           LSV   + +   ++FD+ PH F P P+V ST+I   I    P+    ++L  KI + +FG
Sbjct: 171 LSVAVQFYSNPKIVFDVPPHCFIPQPEVHSTIIGLDILSEPPVEVADKNLYFKIVKASFG 230

Query: 232 KRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           +RRKTL  +L   G  N        ++ + G+  N+R E L++  F ++TN++
Sbjct: 231 QRRKTLVNALSNSGFFNKNKEQIKQIIAEMGLNENIRGEVLTVAQFAQLTNLI 283


>gi|307091890|gb|ADN28280.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 123

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 89/124 (71%), Gaps = 1/124 (0%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           LDLN+  +IA ++G L+G+TV+E+G GPG LT+  L L A +V+ IE+D +    L+ ++
Sbjct: 1   LDLNLTARIARAAGPLEGVTVVEVGPGPGGLTRAPLALSASRVVAIERDPRCVAALQTVA 60

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            ++P RL +I+ DAL++D   +     P RI+ANLPYNI T LL +W++A+ WPP+++SL
Sbjct: 61  ERYPGRLTVIEGDALQIDASAYAQ-EGPARIVANLPYNIATALLVSWLTAEPWPPWYDSL 119

Query: 151 TLLF 154
           TLLF
Sbjct: 120 TLLF 123


>gi|52843122|ref|YP_096921.1| dimethyladenosine transferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|62900493|sp|Q5ZRF4|RSMA_LEGPH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|52630233|gb|AAU28974.1| dimethyladenosine transferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 256

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 135/261 (51%), Gaps = 12/261 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79
           P+K  GQNFL D  I+ +I  +   L    ++EIG G G LTQ LL  L     I I+ D
Sbjct: 5   PRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLLQKLNQLTAIEIDTD 64

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            Q +      S     +L +I  DAL VDF +F      +R++ NLPYNI T LL   + 
Sbjct: 65  LQSYLTCLPASQ---GKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYLLK 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             T     + +  + QKEV ERI A   +  YGRLSV+  +  +   +FD+ P  F P P
Sbjct: 119 FITC---IDDMHFMLQKEVVERIAAAHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPRP 175

Query: 200 KVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S ++   P+ ++P      E L+ I  +AF  RRKTL  +LK +   + L+  GI+ 
Sbjct: 176 KVDSAIVRLTPYRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGIDG 235

Query: 258 NLRAENLSIEDFCRITNILTD 278
             R E +S+ ++ ++   +++
Sbjct: 236 GKRPEQISVAEYVQLAKFISN 256


>gi|298505979|gb|ADI84702.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
           [Geobacter sulfurreducens KN400]
          Length = 276

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 139/271 (51%), Gaps = 20/271 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  +K +GQNFL D ++L +IA    +  G  ++EIG G G LT  L  L A +++ +E 
Sbjct: 6   IRARKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEL-AGQLVAVEL 64

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLFN 136
           D +  P+L+   S +P+ + II+ D L +D  +      + P ++ ANLPYNI T +LF 
Sbjct: 65  DNRLVPLLRGSFSGNPS-VTIIEGDILDLDLRETLGRYGTPPWKVAANLPYNISTPVLFR 123

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            + A      +  L L+ QKEVG R+ A   S  YG LSVL       T    + P  F 
Sbjct: 124 LLDARD---LFSRLVLMLQKEVGNRLAAGPGSKEYGVLSVLFQLHFDVTREILVRPGSFH 180

Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG-------- 246
           P PKV S V+ F+P   P +    E   +++ + +F  RRKTL   LK  GG        
Sbjct: 181 PVPKVDSVVLLFVPLAQPRVDVGDEDYFRRVVKASFAMRRKTLWNCLK--GGALGVPTDG 238

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             ++L + GI+   R E LS+ +F  +T  L
Sbjct: 239 IRDVLARCGIDEGRRGETLSLHEFASLTKEL 269


>gi|225012229|ref|ZP_03702666.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-2A]
 gi|225003784|gb|EEG41757.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-2A]
          Length = 261

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/253 (38%), Positives = 138/253 (54%), Gaps = 9/253 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL DL+I +KIA++        V+EIG G G LTQ L+    + + +IE D +
Sbjct: 7   KKKLGQHFLNDLSIAQKIADTLVFDHYKKVLEIGPGMGVLTQFLVP-KTKNLHLIEIDSE 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++  S+   +  I + D LK+  +K F    P  II N PYNI T+++F  +   
Sbjct: 66  SVNYLRNNYSEIDTK--ITEGDFLKIKLKKIFG-DHPFAIIGNFPYNISTQIVFKTLEYR 122

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              PF+  +   FQKEV ERI     S  YG LSVL       T +F + PHVF P PKV
Sbjct: 123 EQIPFFVGM---FQKEVAERICEPPGSKKYGILSVLAQIFYNTTYLFSVPPHVFSPPPKV 179

Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
            S V+  +   +    C E L  KI + +F +RRKTLR SLK L   ++L +  I  +LR
Sbjct: 180 DSAVMQMVRKEDFNLDCDEGLLFKIVKLSFQQRRKTLRNSLKTLNLPDILREDTI-FDLR 238

Query: 261 AENLSIEDFCRIT 273
            E LS +DF ++T
Sbjct: 239 PEKLSGDDFIQLT 251


>gi|30248888|ref|NP_840958.1| dimethyladenosine transferase [Nitrosomonas europaea ATCC 19718]
 gi|33516924|sp|Q82W15|RSMA_NITEU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|30138505|emb|CAD84795.1| ksgA; dimethyladenosine transferase [Nitrosomonas europaea ATCC
           19718]
          Length = 257

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 139/264 (52%), Gaps = 15/264 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKD 79
           P+K  GQ+FL+D +++ +I      + G  +IEIG G G LT+ LL  L   +VI I++D
Sbjct: 5   PRKRFGQHFLVDTSVIAEIIHIIHPVPGDRMIEIGPGLGALTKPLLNVLDELQVIEIDRD 64

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                I+  +S  +P +L I   DALK DF +   +   +RII NLPYNI T LLF+   
Sbjct: 65  -----IVDYLSRTYPGKLVIHNIDALKFDFSE---LGEGLRIIGNLPYNISTPLLFHL-- 114

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +      +  + Q EV ER+ A  ++P YGRLS++   R +   M  +    F P P
Sbjct: 115 -SRFSSLITDMYFMLQLEVVERMVALPSTPDYGRLSIMLQNRFEMEQMLVVPAESFDPPP 173

Query: 200 KVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           +V S ++   P   P IP   E L  ++   AF +RRKTLR +L+     +   +  I++
Sbjct: 174 RVQSAIVCMRPKAEPTIPLKHERLFAELVSAAFSQRRKTLRNTLRHYLTADDFERLEIDS 233

Query: 258 NLRAENLSIEDFCRIT-NILTDNQ 280
            LRAENLS+  +  I   +  D Q
Sbjct: 234 GLRAENLSLAQYAAIVRQVYEDRQ 257


>gi|330998260|ref|ZP_08322085.1| dimethyladenosine transferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329568649|gb|EGG50450.1| dimethyladenosine transferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 283

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 139/276 (50%), Gaps = 26/276 (9%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL I + IA++  +  GI V+E+G G G +TQ L+  G R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKIAQDIADTVDACPGIPVLEVGPGMGVMTQFLVGKG-RPVKVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D   F  +  + + +P   E II+DD LK+  E+ F    P  +  N PYNI +++ F  
Sbjct: 63  D---FESVAYLRANYPQLEENIIEDDFLKMHLERTFG-GQPFVLTGNYPYNISSQIFFKM 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P     T + QKEV ERI A   S  YG LSVL         +F +  HVF P
Sbjct: 119 LDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYSVEYLFTVHEHVFNP 175

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    +      C E L K++ +  F +RRK LR S++ +   +  H+A  E
Sbjct: 176 PPKVKSAVIRMTRNSTTDLGCNERLFKQVVKTTFNQRRKVLRNSIRPVLA-DADHKARQE 234

Query: 257 TNL---------------RAENLSIEDFCRITNILT 277
             L               R E LS+ DF  +TN +T
Sbjct: 235 GRLPKDHAEFLSAEIFGRRPEQLSVADFINLTNAIT 270


>gi|331002316|ref|ZP_08325834.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330410132|gb|EGG89566.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 292

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 145/284 (51%), Gaps = 22/284 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y    +K  GQNFL+D ++L KI  +SG       IEIG G G+LTQ L    A+ 
Sbjct: 13  IIKKYDFSFQKKFGQNFLIDTHVLDKICLASGLGGNDLAIEIGPGIGSLTQYLANT-AKA 71

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-------FNISSPIRIIANL 125
           V+ IE D+   PIL +  + + N + II  D LK+D +K        +     IRI+ANL
Sbjct: 72  VVAIEIDKNLLPILNETLANYKN-ISIINADFLKIDLKKLIEDCRQKYGEFENIRIVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T ++ N + +       +S+T++ QKEV +R+ A      YG LS+   + +   
Sbjct: 131 PYYITTPIIMNVLESHIH---IDSITVMIQKEVADRMQALPGGKDYGALSLAVQYYSDPY 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243
           ++  + P+ F P PK+ S+VI   I    PI    E L  +I +  F +RRKTL  S+  
Sbjct: 188 VVAFVPPNCFIPRPKIGSSVIRLDIYKEKPIKADNEKLMFQIIRAGFNQRRKTLVNSIGN 247

Query: 244 LG-----GENLLHQ---AGIETNLRAENLSIEDFCRITNILTDN 279
            G      E ++H     G    +R E LS+E+F ++   L D+
Sbjct: 248 FGEFNFSKEKIIHALSLLGKSEKIRGEALSLEEFAKLAGYLKDS 291


>gi|225571219|ref|ZP_03780217.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM
           15053]
 gi|225160050|gb|EEG72669.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM
           15053]
          Length = 291

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 149/289 (51%), Gaps = 21/289 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  ++++ IL  Y    +K  GQNFL+D ++L KI  ++       V+EIG G G +
Sbjct: 5   TLGNPQNTIE-ILQKYDFSFQKKFGQNFLIDTHVLDKIIRAADITKEDMVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    A KV+ +E D+   PIL D    + N + +I +D LK+D  +     N   P
Sbjct: 64  TQYLAE-AAGKVVAVEIDKNLIPILTDTLHDYDN-VTVINEDVLKLDVRELAREENGGRP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPY I T ++      D      ES+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 LKVVANLPYYITTPIIMGLFENDVP---VESITVMVQKEVADRMQTGPGNKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235
            +  +  ++ ++ P+ F P P+V S VI    H  P P  ++  K    I + +F +RRK
Sbjct: 179 QYYAEPYIVANVPPNCFMPRPRVGSAVIRLTRHEKP-PVEVKDEKLMFDIIRASFNQRRK 237

Query: 236 TLRQSLKR-----LGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276
           TL   L       L  E L   + + G    +R E+L++E+F  ++N +
Sbjct: 238 TLANGLNNSDKLSLAKEELIEAIERLGKGPGVRGESLTLEEFAELSNYI 286


>gi|121596391|ref|YP_988287.1| dimethyladenosine transferase [Acidovorax sp. JS42]
 gi|226729746|sp|A1WD86|RSMA_ACISJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120608471|gb|ABM44211.1| dimethyladenosine transferase [Acidovorax sp. JS42]
          Length = 253

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 136/265 (51%), Gaps = 24/265 (9%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+  LG  ++ V+
Sbjct: 2   KHIPRKRFGQHFLSDQGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLG--RLTVV 59

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
           E D+     L+    QH  +L++I+ D LKVDF +      +S IR++ NLPYNI T +L
Sbjct: 60  ELDRDLAARLR----QH-GQLDVIESDVLKVDFAQVAQALNASKIRVVGNLPYNISTPIL 114

Query: 135 FNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           F+ ++     AD           + QKEV +R+ A   +  YGRLSV+  WR     +  
Sbjct: 115 FHLLAHVRVIADQ--------HFMLQKEVIDRMVAAPATSAYGRLSVMLQWRYAMENVLF 166

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P P+V S V+  +PH  P    +  L+++ Q AF +RRK LR +L R   E  
Sbjct: 167 VPPESFDPPPRVDSAVVRMVPHEAPEALSMPVLEELVQVAFSQRRKLLRHTLGRW-LEAR 225

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
                 +T  RAE + + ++  +  
Sbjct: 226 QFAGTFDTQRRAEEVPVSEYVALAQ 250


>gi|225026666|ref|ZP_03715858.1| hypothetical protein EUBHAL_00918 [Eubacterium hallii DSM 3353]
 gi|224956036|gb|EEG37245.1| hypothetical protein EUBHAL_00918 [Eubacterium hallii DSM 3353]
          Length = 293

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 147/278 (52%), Gaps = 18/278 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            +L  Y    +K  GQNFL+D ++L KI  ++       V+EIG G G +TQ L    AR
Sbjct: 19  AVLQRYGFNFQKKYGQNFLIDTHVLDKIIGAAEIGKDDFVLEIGPGIGTMTQYLAE-AAR 77

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128
           +V+ +E D +  PIL+D   ++ N + ++ +D LKVD  K     N   PI+++ANLPY 
Sbjct: 78  EVVAVEIDTKLIPILEDTLKEYDN-VTVLNEDILKVDIRKIAEEKNGGKPIKVVANLPYY 136

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++     ++      +S+T++ QKEV +R+     +  YG LS+   +  +  ++ 
Sbjct: 137 ITTPIIMGLFESEVP---LDSITVMVQKEVADRMQVGPGTKDYGALSLAVQYYAEPYIVA 193

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLK---- 242
           ++ P+ F P P V S VI    +   P+     +   KI + +F +RRKTL+  L     
Sbjct: 194 NVPPNCFIPRPAVGSAVIRLTRYQEKPVKVNDSAFMFKIIRASFNQRRKTLQNGLYNSSE 253

Query: 243 -RLGGEN---LLHQAGIETNLRAENLSIEDFCRITNIL 276
            R+  E     L + G+   +R E LS+E+F ++++IL
Sbjct: 254 LRIPKEKTVAALEEMGLTPTIRGEKLSLEEFAKLSDIL 291


>gi|220933005|ref|YP_002509913.1| dimethyladenosine transferase [Halothermothrix orenii H 168]
 gi|254807869|sp|B8D0I2|RSMA_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|219994315|gb|ACL70918.1| dimethyladenosine transferase [Halothermothrix orenii H 168]
          Length = 301

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 19/278 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y +   K +GQNFL+D NI+ KI  ++   +   VIEIG G G+LTQ ++    R 
Sbjct: 14  IIRKYNLKLHKGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGR- 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS-PIRIIANLPYN 128
           V   EKD++   +L+++ + + N LE+I  D L+VD++ FF+   IS   ++++ANLPY 
Sbjct: 73  VFAFEKDKRLVKVLRELFNGY-NHLEVIGQDVLEVDWKHFFDSRGISDRSVKVLANLPYY 131

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++   + ++     +  + L+ QKEV +R+ A   S  YG LSV   +  +  +  
Sbjct: 132 ITTPVIMGLLESNIT---FSLMVLMVQKEVADRMAAAPGSKDYGALSVAVQYYGEVEIFH 188

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG 246
            + P VF P P+V S++I   PH  P+          K+ +  F +RRKTL+ SL +   
Sbjct: 189 KVPPTVFIPRPRVYSSIIKIKPHSEPVYRVKNEGFFFKMVRAIFQQRRKTLKNSLTKSSE 248

Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
             L        + + G++  +R E L+I+    ++N L
Sbjct: 249 IKLDKGIVTEAIRELGLDPRIRGEKLTIKQMAILSNTL 286


>gi|261417535|ref|YP_003251217.1| dimethyladenosine transferase [Geobacillus sp. Y412MC61]
 gi|319765192|ref|YP_004130693.1| dimethyladenosine transferase [Geobacillus sp. Y412MC52]
 gi|261373992|gb|ACX76735.1| dimethyladenosine transferase [Geobacillus sp. Y412MC61]
 gi|317110058|gb|ADU92550.1| dimethyladenosine transferase [Geobacillus sp. Y412MC52]
          Length = 293

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 144/284 (50%), Gaps = 24/284 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL+KI + +        IEIG G G LT+  L   A
Sbjct: 12  KEILERYGFSFKKSLGQNFLIDANILRKIVDVADISPDTGAIEIGPGIGALTEQ-LARRA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
           +KV+  E D +  PIL D  S + N + I   D LK D      E+  ++S  + ++ANL
Sbjct: 71  KKVVAFEIDGRLLPILADTLSPYDN-VRIFHQDVLKADLHAVIAEELADVSDRM-VVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++ D  P     + ++ QKEV +R+ A+  +  YG L++   + T+A 
Sbjct: 129 PYYVTTPIIMKLLT-DRLP--IRGMVVMLQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLK 242
           ++  +   VF P P V S VI  +   +P P  ++      ++ + +F +RRKTL  +L 
Sbjct: 186 VIMTVPRTVFMPQPNVDSAVIRLVKRQHP-PVVVDDEGVFFQVVRASFAQRRKTLFNNLT 244

Query: 243 R--LGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
               GG       E +L   GI+   R E L I +F  ++N L 
Sbjct: 245 NNLPGGKENKEQIERVLVALGIDPRRRGETLDIAEFASLSNALA 288


>gi|308272694|emb|CBX29298.1| Dimethyladenosine transferase [uncultured Desulfobacterium sp.]
          Length = 304

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 147/277 (53%), Gaps = 15/277 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S +T+LS + + PKK  GQNFL D +  + I   S  L    ++E+G+G G LT + L  
Sbjct: 25  SPRTLLSAWNLSPKKQYGQNFLADPSTAEMIIFRSKILPEDIILEVGSGLGALT-IPLAA 83

Query: 69  GARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLP 126
            A +V  +EKD     +L+ +I S+  + +EI+ ++ LK+D           I +  NLP
Sbjct: 84  AAHQVYAVEKDPNLVQVLQNEILSKSIDNVEILNENILKLDINGLAAKHDRKIIVFGNLP 143

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI +++L   I   +         L+FQKE+ +RI  +  S  YGR+SV+  +      
Sbjct: 144 YNISSQILIKLIKERSC---VSRAILMFQKELAQRICGKPGSKDYGRISVMLKYCADTAK 200

Query: 187 MFDISPHVFFPSPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL--K 242
           + D+   +F+P PK+ S +  I F  H + +         + + AFGKRRKTL+ SL   
Sbjct: 201 IADVKASLFYPKPKIDSEILEIRFKEHQDVVADDETFFFSVIKAAFGKRRKTLKNSLSAS 260

Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITN 274
            LG      E+ L+ AGI+ + R+E L+IE+F ++ N
Sbjct: 261 ELGISAQNAESALNSAGIDPSRRSETLNIEEFVKLGN 297


>gi|319786166|ref|YP_004145641.1| dimethyladenosine transferase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464678|gb|ADV26410.1| dimethyladenosine transferase [Pseudoxanthomonas suwonensis 11-1]
          Length = 257

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 134/258 (51%), Gaps = 12/258 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKD 79
           PKK +GQNFL D + +++I ++     G  V+EIG G G LT  LL   GA  + VIE D
Sbjct: 7   PKKSLGQNFLHDASYIERIVQAIDPRPGDRVVEIGPGQGALTLPLLRRHGA--LTVIEFD 64

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +     L ++++    +LEII  D L+VD          I++  NLPYNI + +LF+ + 
Sbjct: 65  RDLVGPLAEMAAPV-GQLEIIHRDVLQVDLAAL-AAGGKIKLAGNLPYNISSPILFHALD 122

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                     +  + QKEV +R+ A   S  YGRLSV+     +   +F + P  F P+P
Sbjct: 123 HAAA---ITDMVFMLQKEVVDRMGAGPGSKVYGRLSVMLQAYCQVQPLFVVPPGAFRPAP 179

Query: 200 KVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           KV S V+  +P  +P    +   +    + + AFG+RRKTLR +L+ +        AG+ 
Sbjct: 180 KVDSAVVRLVPR-DPATIHIADRDRFAHVVRAAFGQRRKTLRNALRDVCSPEQFEAAGVS 238

Query: 257 TNLRAENLSIEDFCRITN 274
            + RAE + +  F R+ N
Sbjct: 239 ADDRAEQVDVAGFVRLAN 256


>gi|296131650|ref|YP_003638897.1| dimethyladenosine transferase [Thermincola sp. JR]
 gi|296030228|gb|ADG80996.1| dimethyladenosine transferase [Thermincola potens JR]
          Length = 292

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 155/291 (53%), Gaps = 27/291 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K I+  Y    KK +GQNFL+D N++  I +++       V+EIG G G LT+ L    
Sbjct: 10  VKNIIEKYGFRFKKALGQNFLIDRNVVTNICKTADLKKSDLVVEIGPGIGTLTEQLAHY- 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-------DFEKFFNIS-SPIRI 121
           A  VI +E D+    IL++    + N + IIQ+D LKV       DF K  +++  P ++
Sbjct: 69  AGHVIAVELDKDLIGILEENLRAYGN-VTIIQNDILKVNLDKVVGDFRKEHDLAEGPYKV 127

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T +L  ++  + +      + ++ QKEV ERI AQ  S  YG LS+   + 
Sbjct: 128 VANLPYYITTPVLM-YLMENNFN--ISEIVVMIQKEVAERIAAQPGSKDYGALSLAVRYY 184

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLR 238
           T+  ++  +   VF P P+V S VI  +  L+  P  +   E L +I + AFG+RRKTL 
Sbjct: 185 TEPALVMRVPRTVFIPKPEVDSAVIK-LKRLSRPPVEVKDEELLFRIIRAAFGQRRKTLL 243

Query: 239 QSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            SL+  GG        +  L Q GI    R E L++++F  ++NI ++  D
Sbjct: 244 NSLR--GGLGCDKEVIKKALTQVGINPERRGETLTLQEFAALSNIFSNLLD 292


>gi|160894460|ref|ZP_02075236.1| hypothetical protein CLOL250_02012 [Clostridium sp. L2-50]
 gi|156863771|gb|EDO57202.1| hypothetical protein CLOL250_02012 [Clostridium sp. L2-50]
          Length = 287

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           ++N   +++TI   Y+   +K  GQNFL+D +++ KI  ++       V+EIG G G +T
Sbjct: 4   LSNPQVTIQTI-KKYEFAFQKKFGQNFLIDDHVITKIINAAEITKDDLVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    A KVI +E D+   PIL +  +++ N + II +D LK+D  +     N   PI
Sbjct: 63  QYLAE-SAGKVIAVEIDKNLIPILGETLAEYDN-VTIINEDILKLDINRLVEEENDGKPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +S+T++ QKEV +R+     S  YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFESHVP---LQSITVMVQKEVADRMQVGPGSKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLK-KITQEAFGKRRKT 236
           +  K  +  ++ P+ F P P V S VI    +  P P  +  ESL  K+ + +F +RRKT
Sbjct: 178 YYAKPYIAANVPPNCFIPRPGVGSAVIRLTRYEEP-PVMVKDESLMFKLIRASFNQRRKT 236

Query: 237 LRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L+  +         +   E  L + G+  N+R E+L++ +F ++++ +++
Sbjct: 237 LQNGIANSPELPYSKAQVEKALEKMGLAANVRGESLTLAEFAKLSDTISE 286


>gi|153827422|ref|ZP_01980089.1| dimethyladenosine transferase [Vibrio cholerae MZO-2]
 gi|149738665|gb|EDM53008.1| dimethyladenosine transferase [Vibrio cholerae MZO-2]
          Length = 282

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 140/280 (50%), Gaps = 21/280 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           TM N  H     L H     +K  GQNFL D  I+  I  +     G  ++EIG G G +
Sbjct: 11  TMRNDVH-----LGHKA---RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAI 62

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSP 118
           T+ +      K  VIE D+     L++    HP   ++L I + DA++ DF++    ++ 
Sbjct: 63  TEPV-GREVDKFTVIELDRDLAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNK 117

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           +R+  NLPYNI T L+F+           + +  + QKEV  R+ A   +  YGRL+V+ 
Sbjct: 118 LRVFGNLPYNISTPLMFHLFEFHRD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMA 174

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKT 236
            +  K   + ++ P+ F P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT
Sbjct: 175 QYYCKVVPVLEVPPNAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKT 234

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +R   K L     L   GI   +R ENL++  F  + N L
Sbjct: 235 VRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWL 274


>gi|315604977|ref|ZP_07880031.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313256|gb|EFU61319.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 329

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 21/287 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ I     I P K +GQNF+ D   +++I  +     G  V+E+G G G+LT  LL +G
Sbjct: 38  VRAISEALGIRPTKVLGQNFVHDAGTVRRIVAAGDVRAGDEVVEVGPGLGSLTLALLEVG 97

Query: 70  ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIA 123
           AR V  +E D      L +       +   R  ++  DA ++   + F +    P +++A
Sbjct: 98  AR-VRAVEIDPPLASALPETIRSRMGEASGRFHVVTMDATEITGNEDFGVDWPPPTKLVA 156

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L N + A    P  E++ ++ Q EV +R+ A+  S  YG  SV   W  +
Sbjct: 157 NLPYNVAVPVLLNMLDAF---PTIEAVVVMVQAEVADRLAAEPGSRTYGVPSVKASWYGE 213

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE----AFGKRRKTLRQ 239
                 I   VF+P P V S ++       P P   E+L++ T E    AFG+RRKTLR 
Sbjct: 214 VQRAGTIGRTVFWPVPGVDSALVRLT--RLPSPRGDEALRRATFEVTDVAFGQRRKTLRA 271

Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           +LK   G     E LL  AGI+   R E LSI++F  +   + + ++
Sbjct: 272 ALKNWAGGPEASEALLCDAGIDPTRRGETLSIDEFVALGRAVLEARE 318


>gi|325298753|ref|YP_004258670.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides
           salanitronis DSM 18170]
 gi|324318306|gb|ADY36197.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides
           salanitronis DSM 18170]
          Length = 263

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/255 (35%), Positives = 134/255 (52%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+  G R++ V+E D 
Sbjct: 6   PKKFLGQHFLKDLQVAQDIADTVDTCPDLPILEVGPGMGVLTQFLIPKG-RQLKVVELDF 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++  +Q  +   II+ D LK+D    F    P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLRENFAQLGD--NIIEKDFLKMDLSGLFG-GKPFVLTGNYPYNISSQIFFKMLDY 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   S  YG LS+L     K   +F +  HVF P PK
Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAAPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPPPK 178

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +      C E L K+I +  F +RRKTLR S+  +  ++    A    + 
Sbjct: 179 VKSAVIRMTRNDTTDLGCNEKLFKQIVKTTFNQRRKTLRNSISTILDKSHPLSADALFDK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS++DF  +TN
Sbjct: 239 RPEQLSVQDFISLTN 253


>gi|54113937|gb|AAV29602.1| NT02FT1085 [synthetic construct]
          Length = 262

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 136/265 (51%), Gaps = 9/265 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            Y    KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL+  +  V V
Sbjct: 2   QYMTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           +E D      L   + Q      I   D LK D     N S+  I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLI-ANCQKYGTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS   GRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F+P PKV S ++   P +   +       ++I +++F +RRKTL  +LK +  E  +  +
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 254 G--IETNLRAENLSIEDFCRITNIL 276
              ++TNLRAENLS+ DF  + N L
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFL 261


>gi|261250207|ref|ZP_05942783.1| dimethyladenosine transferase [Vibrio orientalis CIP 102891]
 gi|260939323|gb|EEX95309.1| dimethyladenosine transferase [Vibrio orientalis CIP 102891]
          Length = 268

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 135/263 (51%), Gaps = 13/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  S     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSSINPKPGQNLVEIGPGLGAITEPV-GKEVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELGDKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHKD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P P   L+ L ++ +E F +RRKT+R   K L    +L + GI 
Sbjct: 184 PKVDSAVVRLVPYEEIPHPVSDLKYLDRVCREGFNQRRKTVRNCYKGLLSAEVLEELGIN 243

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            ++R ENL++  F  + N L  N
Sbjct: 244 PSMRPENLTLVQFVEMANWLAAN 266


>gi|89898507|ref|YP_515617.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56]
 gi|119365014|sp|Q253R6|RSMA_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|89331879|dbj|BAE81472.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56]
          Length = 284

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/270 (36%), Positives = 143/270 (52%), Gaps = 23/270 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK + QNFL+D NIL+KI   S    G  V+EIG G G LT++L+  GA  V+ +EKD 
Sbjct: 26  PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAH-VVALEKD- 83

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWI 138
              P+ ++   Q P  LEI   DA K    +          R++ANLPY+I T LL    
Sbjct: 84  ---PMFEETLKQLPIDLEIT--DACKYPLSQLQEKGWQGKGRVVANLPYHITTPLLTKLF 138

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                P  W+++T++ Q EV  RITAQ     YG L++   +       F +S   FFP 
Sbjct: 139 LE--VPNQWKTITVMMQDEVARRITAQPGGKEYGSLTIFLQFFADVRYAFKVSSGCFFPK 196

Query: 199 PKVTSTVIHF-IPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRLGGENL---- 249
           P+V+S V+H  +    P+    ESL K    +T+ AFG+RRK L  +LK L  ++L    
Sbjct: 197 PQVSSAVVHMTVKDTFPLE---ESLHKKFFSLTRAAFGQRRKLLANALKNLYPKDLVFSA 253

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+Q       R E LS++++ ++  +L+ N
Sbjct: 254 LNQLNFSEKTRPETLSLDEYLKLFQLLSLN 283


>gi|313204313|ref|YP_004042970.1| dimethyladenosine transferase [Paludibacter propionicigenes WB4]
 gi|312443629|gb|ADQ79985.1| dimethyladenosine transferase [Paludibacter propionicigenes WB4]
          Length = 281

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/255 (38%), Positives = 134/255 (52%), Gaps = 14/255 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KKY+GQ+FL D+ I  +IA+S   LDG T V+EIG G G LTQ LL      +  +E D+
Sbjct: 28  KKYLGQHFLKDMGIAGRIADSL-ILDGKTSVLEIGPGMGVLTQFLLQNPLIDLTAVELDK 86

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-S 139
           +    L     QH  +L +I+ D LK+D +  F       +I N PYNI +++ F  + +
Sbjct: 87  ESVEYL----HQHYPQLNVIEADFLKLDLKTIF--PDKFCVIGNFPYNISSQIFFKMLDN 140

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D+ P     L  + QKEV ERI A   S  YG LSVL     K   +F +  HVF P P
Sbjct: 141 KDSIP----CLAGMIQKEVAERIAAPAGSKTYGILSVLMQAYYKIEYLFTVHEHVFDPPP 196

Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S VI F  + ++ I C  +  K + + +F +RRKTLR SLK L        A    +
Sbjct: 197 KVKSAVIRFTRNEVSKIDCDEQLFKAVVKTSFNQRRKTLRNSLKPLVEAGHPMYADPIFD 256

Query: 259 LRAENLSIEDFCRIT 273
           LR E L +  F  +T
Sbjct: 257 LRPERLDVAAFIDLT 271


>gi|297568597|ref|YP_003689941.1| dimethyladenosine transferase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924512|gb|ADH85322.1| dimethyladenosine transferase [Desulfurivibrio alkaliphilus AHT2]
          Length = 287

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 140/287 (48%), Gaps = 18/287 (6%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N+S  +K +L+   + P K +GQNFL+   + ++I  + G     TV+E+G G G LT+ 
Sbjct: 2   NQSE-IKKLLTERGLAPSKQLGQNFLIQPVLAERIVTAGGITPDDTVVELGVGLGALTRP 60

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
           L    AR VI +E D       ++     P  +E+   D L+ DF      + + ++I+A
Sbjct: 61  LAATAAR-VIGLEIDAGIIKYHRE-HQGLPANVELRHQDLLRADFAALAAEVGTRLKIMA 118

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY +   LLF  +             L+ QKEV +R+TA+  S  YG L+VL G    
Sbjct: 119 NLPYAVTNPLLFKLVEQRRA---IRQAVLMIQKEVAQRLTARPGSKEYGVLTVLLGTCAT 175

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQS 240
              + ++ P  F+P PKV S VI    H  P          L+++   AF +RRKTL  S
Sbjct: 176 VQRLLEVGPGNFYPRPKVDSVVIAINFHEQPAALTEVDFALLRRVVDSAFRQRRKTLLNS 235

Query: 241 LKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L    G  L        L  AGI+   RAENL  EDF R+T  +++ 
Sbjct: 236 LSAGAGLGLDRNQTAAALAAAGIDPRFRAENLDTEDFLRLTKAVSEQ 282


>gi|320166640|gb|EFW43539.1| dimethyladenosine transferase 1 [Capsaspora owczarzaki ATCC 30864]
          Length = 412

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 136/280 (48%), Gaps = 23/280 (8%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y +  K  + QNF+LDLN+  ++   +   D I VIE+G+GPG LT+ +L  G +KV  I
Sbjct: 18  YGLSAKSQLSQNFILDLNVTNRLIAPAKLKDAI-VIEVGSGPGALTRSILEAGPKKVFAI 76

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------NISSPIRIIANLP 126
           EKD++F P L+ ++     R++++  D L +D+ K              S+ + II NLP
Sbjct: 77  EKDRRFLPSLQLLAEAAEGRMQVVHHDILTLDYTKLLAPLVKPQPWSEPSNGVYIIGNLP 136

Query: 127 YNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +NI TRLL + +         +      L   FQ EV ERI A+  +    RLS+L    
Sbjct: 137 FNISTRLLVDLVHDCRLKRGVFGFGRTHLLFTFQHEVAERIVAKPGTSDRSRLSLLVQHA 196

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQS 240
             A   + +   VF P PKV    ++F P   P+    + S++ + Q    +R K +   
Sbjct: 197 FAARYHYHMPNTVFVPPPKVQVGGVYFAPLEQPMTAAPIASVELVAQHILNQRGKFISNG 256

Query: 241 LKRLGGEN------LLHQAGIETNLRAENLSIEDFCRITN 274
           + RL G N      LL QA I    R  N+S E F  + +
Sbjct: 257 VGRLVGGNADIALQLLEQAKIPPTTRVSNVSTEQFAALVD 296


>gi|265765406|ref|ZP_06093681.1| dimethyladenosine transferase [Bacteroides sp. 2_1_16]
 gi|263254790|gb|EEZ26224.1| dimethyladenosine transferase [Bacteroides sp. 2_1_16]
 gi|301161792|emb|CBW21332.1| putative dimethyladenosine transferase [Bacteroides fragilis 638R]
          Length = 272

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 135/255 (52%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVK-KERLVKVVEVDY 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++      +   II+DD LK++ ++ F+   P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFD-GHPFVLTGNYPYNISSQIFFKMLDN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   S  YG LSVL     +   +F ++  VF P PK
Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVNEQVFNPPPK 178

Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +    + C  +  K+I +  F +RRKTLR S+K + G++         N 
Sbjct: 179 VKSAVIRMTRNETQELGCDPKLFKQIVKTTFNQRRKTLRNSIKPILGKDCPLTEDTLFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+++F  +TN
Sbjct: 239 RPEQLSVQEFIHLTN 253


>gi|21241633|ref|NP_641215.1| dimethyladenosine transferase [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|294625753|ref|ZP_06704372.1| dimethyladenosine transferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664835|ref|ZP_06730156.1| dimethyladenosine transferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|27151571|sp|Q8PP25|RSMA_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21106994|gb|AAM35751.1| dimethyladenosine transferase [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|292599923|gb|EFF44041.1| dimethyladenosine transferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605391|gb|EFF48721.1| dimethyladenosine transferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 262

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 134/265 (50%), Gaps = 12/265 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73
           S +    KK +GQ+FL D   + +I ++     G  ++EIG G G +T  +L   GA  +
Sbjct: 3   SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGA--L 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D+     L + ++     L II  D L VDF    +  +PIR++ NLPYNI + +
Sbjct: 61  TVIEFDRDLIAPLTEAAAPI-GALRIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPI 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +           +  + QKEV +R+ A   S  YGRLSV+     + T +F + P 
Sbjct: 119 LFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250
            F P PKV S V+  +P  +P    +   ++   + +  FG+RRKTLR +L  +      
Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVLINDRRRFADVVRAGFGQRRKTLRNALSAICEPAHF 234

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             A +  + RAE L + DF R+ N+
Sbjct: 235 DAAQVRPDARAEQLEVADFIRLANV 259


>gi|53712071|ref|YP_098063.1| dimethyladenosine transferase [Bacteroides fragilis YCH46]
 gi|60680265|ref|YP_210409.1| dimethyladenosine transferase [Bacteroides fragilis NCTC 9343]
 gi|253563890|ref|ZP_04841347.1| dimethyladenosine transferase [Bacteroides sp. 3_2_5]
 gi|62900503|sp|Q64Y97|RSMA_BACFR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|81316665|sp|Q5LHC9|RSMA_BACFN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|52214936|dbj|BAD47529.1| dimethyladenosine transferase [Bacteroides fragilis YCH46]
 gi|60491699|emb|CAH06452.1| putative dimethyladenosine transferase [Bacteroides fragilis NCTC
           9343]
 gi|251947666|gb|EES87948.1| dimethyladenosine transferase [Bacteroides sp. 3_2_5]
          Length = 272

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 135/255 (52%), Gaps = 8/255 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E D 
Sbjct: 6   PKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVK-KERLVKVVEVDY 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L++      +   II+DD LK++ ++ F+   P  +  N PYNI +++ F  +  
Sbjct: 65  ESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFD-GHPFVLTGNYPYNISSQIFFKMLDN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + QKEV ERI A   S  YG LSVL     +   +F ++  VF P PK
Sbjct: 122 KDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVNEQVFNPPPK 178

Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +    + C  +  K+I +  F +RRKTLR S+K + G++         N 
Sbjct: 179 VKSAVIRMTRNETQELGCDPKLFKQIVKTTFNQRRKTLRNSIKPILGKDCPLTEDALFNK 238

Query: 260 RAENLSIEDFCRITN 274
           R E LS+++F  +TN
Sbjct: 239 RPEQLSVQEFIHLTN 253


>gi|262403931|ref|ZP_06080488.1| dimethyladenosine transferase [Vibrio sp. RC586]
 gi|262349893|gb|EEY99029.1| dimethyladenosine transferase [Vibrio sp. RC586]
          Length = 272

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 134/260 (51%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   GI 
Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEALGIN 243

Query: 257 TNLRAENLSIEDFCRITNIL 276
           + +R ENL++  F  + N L
Sbjct: 244 SGMRPENLTLAQFVALANWL 263


>gi|295702279|ref|YP_003595354.1| dimethyladenosine transferase [Bacillus megaterium DSM 319]
 gi|294799938|gb|ADF37004.1| dimethyladenosine transferase [Bacillus megaterium DSM 319]
          Length = 292

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 144/282 (51%), Gaps = 22/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL +I + +   +    IEIG G G LT+ L    A
Sbjct: 12  KEILKKYGFTFKKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLAK-RA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
           +KV+  E DQ+  PIL D  S + N  ++I  D LK D      ++F NI   + ++ANL
Sbjct: 71  KKVLAFEIDQRLLPILADTLSPYSN-AKVIHQDVLKADLKGMLEQEFENIED-LMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T +L   +  +  P     + ++ QKEV ERI A+  +  YG LS+   + T+A 
Sbjct: 129 PYYVTTPILMKLLE-EQIP--VRGIVVMLQKEVAERIAAKPGTKEYGSLSIAIQYYTEAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241
            +  +   VF P P V S VI  +    P     +     ++ + +FG+RRKT+  +L  
Sbjct: 186 TVMIVPKTVFNPQPNVDSAVIRLLRRPKPAVEVQDEAFFFQVVRASFGQRRKTILNNLVN 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                  K+   E  L  A I+   R E LSI++F ++++ L
Sbjct: 246 NLPNGKQKKADIEQALSTAEIDPKRRGETLSIQEFGKLSDQL 287


>gi|291295556|ref|YP_003506954.1| dimethyladenosine transferase [Meiothermus ruber DSM 1279]
 gi|290470515|gb|ADD27934.1| dimethyladenosine transferase [Meiothermus ruber DSM 1279]
          Length = 276

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 139/266 (52%), Gaps = 20/266 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L  Y +   K  GQNFL++ + L++I E+ G   G TV+E+G G G LT+ L   G
Sbjct: 17  VRDLLERYGLKADKRFGQNFLVERSYLQQIVEAVGLTPGQTVVEVGPGLGTLTRALAEAG 76

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA-NLPYN 128
           AR V+ IE D++   +  +  +  P  ++II  DAL  D+        P  + A NLPYN
Sbjct: 77  AR-VVSIEMDRRLEAVYAETLAGLP--VQIIWADALSFDWSSL----PPQSLFAGNLPYN 129

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+   + ++ +      +  L QKEV  R+ A+  +P YG LS+   +   A  + 
Sbjct: 130 IATPLITQLLLSNRF----RRIVALVQKEVALRMVARPATPAYGLLSLRVQYHAAARRIV 185

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-- 246
           D+ P  FFP PKVTS+VI   P+  P       L ++ + AF +RRKTL  +LK  G   
Sbjct: 186 DVPPGAFFPPPKVTSSVICLQPNNRP---DHPGLFRLIEAAFAQRRKTLVNALKAAGYPP 242

Query: 247 ---ENLLHQAGIETNLRAENLSIEDF 269
              +  L   G+  N+RAE L +  F
Sbjct: 243 ERVKRGLEAMGLPDNVRAEALGLPQF 268


>gi|225011219|ref|ZP_03701678.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-3C]
 gi|225004633|gb|EEG42596.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-3C]
          Length = 286

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/266 (38%), Positives = 137/266 (51%), Gaps = 20/266 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  KK++GQ+FL D  + +KIAE+   L+G   VIEIG G G LTQ LL      ++ ++
Sbjct: 22  VRAKKHLGQHFLKDQVVARKIAETL-LLNGYDNVIEIGPGTGVLTQYLLEQDIN-ILALD 79

Query: 78  KDQQFFPILK-DISSQH------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            D++    LK D    H          E+   D LK D    FN  +P  I  N PYNI 
Sbjct: 80  LDRESIEYLKTDFEINHLKLLQRKKSFEVRNADFLKEDLSTLFN-GAPFGITGNFPYNIS 138

Query: 131 TRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           T+++F  +   D  P F    T +FQKEV +RI  ++ S  YG LSVL     +A  +F 
Sbjct: 139 TQIVFKMLEYKDRVPEF----TGMFQKEVAQRICEKEGSKAYGILSVLVQAFYEAEYLFT 194

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GE 247
           + P VF P PKV S V+      N  I C    LK + + AF +RRKTLR SLK L   E
Sbjct: 195 VHPEVFNPPPKVQSGVLRLTRKENQSIDCSETLLKTVVKAAFNQRRKTLRNSLKTLQLSE 254

Query: 248 NLLHQAGIETNLRAENLSIEDFCRIT 273
           NL   A  +   R E +S+ DF  +T
Sbjct: 255 NLTKDAIFDK--RPEQISVADFIALT 278


>gi|251773184|gb|EES53737.1| dimethyladenosine transferase [Leptospirillum ferrodiazotrophum]
          Length = 284

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/268 (36%), Positives = 139/268 (51%), Gaps = 16/268 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           P +Y+GQ+FL D  I ++I +S  +  L+    +EIG G   LT+ L     R +I++EK
Sbjct: 14  PARYLGQHFLTDDRIAQRIVDSLPTELLESTPTLEIGPGRMILTRHLARRSPR-LILVEK 72

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++  P L++   +   ++EI + DAL+   E      SP  +I+NLPYNI   LL   I
Sbjct: 73  DERLIPHLEESLREFGEKIEIRRGDALE---ENLVLEGSPYLVISNLPYNISVPLLLKII 129

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              T PP      L+FQKEV ERITA   S  YG LSV     +    +FDI P  F P 
Sbjct: 130 GG-TPPPLMA--VLMFQKEVAERITAPAGSKDYGSLSVAARLLSTPRHLFDIRPGSFTPP 186

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGE------NLLH 251
           PKV S+V+ F+P        L     + + AF  RRKTL+ +LK+ L  E       L+ 
Sbjct: 187 PKVQSSVLSFVPAETRADPSLPGAFHLARAAFAYRRKTLKNALKQGLSPEIVEAVSPLVE 246

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
                ++ R ENLS ED+  +   L ++
Sbjct: 247 ALPQGSDCRPENLSPEDWLFLARTLREH 274


>gi|206972590|ref|ZP_03233533.1| dimethyladenosine transferase [Bacillus cereus AH1134]
 gi|206732492|gb|EDZ49671.1| dimethyladenosine transferase [Bacillus cereus AH1134]
          Length = 292

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 144/283 (50%), Gaps = 24/283 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL 68
           K I+  Y    KK +GQNFL+D N+L +I + +  GS  G   IEIG G G LT+ L   
Sbjct: 11  KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESG--AIEIGPGIGALTEQLAK- 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIAN 124
            A+KV+  E DQ+  PIL +  + + N + +I  D LK D  + FN        + ++AN
Sbjct: 68  RAKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+ 
Sbjct: 127 LPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242
             +  +   VF P P V ST+I  +    P+    +     ++ + +F +RRKTL  +L 
Sbjct: 184 ETVMTVPRTVFVPQPNVDSTIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLS 243

Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                        + +L + GI+   R E LSIE+F  ++N L
Sbjct: 244 NNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 286


>gi|251794062|ref|YP_003008793.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2]
 gi|247541688|gb|ACS98706.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 142/278 (51%), Gaps = 22/278 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I++ Y    KK +GQNFL+D NIL KI  ++G       +EIG G G LTQ  L   A
Sbjct: 18  KEIIAKYGFSFKKSLGQNFLIDQNILHKIVSAAGLDKTKGALEIGPGIGALTQH-LAAAA 76

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
             V  IE D +  PIL DI +     ++++  D LK+D    FE+ F   + + ++ANLP
Sbjct: 77  GTVTAIEIDNRLIPILGDILAGE-EHVKVVHGDVLKLDLKKLFEERFADVAGVSVVANLP 135

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   +  +  P   E++ ++ QKEV ER+ A+     YG LSV   +  +  +
Sbjct: 136 YYVTTPILMKLLE-ERLP--LENIVVMIQKEVAERMAAKPGGKEYGSLSVAVQYYCEPQL 192

Query: 187 MFDISPH-VFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLK 242
           +  I PH VF P P V S VI       P P  +E      +I Q +F +RRKTL  +L 
Sbjct: 193 VC-IVPHTVFIPQPNVDSAVIKLAVREKP-PVEVEDEAHFFRIVQASFAQRRKTLANNLT 250

Query: 243 RLGGE-------NLLHQAGIETNLRAENLSIEDFCRIT 273
              G+        LL    I+   R E LS+++F RI+
Sbjct: 251 AFVGKERREEMTQLLISCEIDPVRRGETLSLDEFARIS 288


>gi|311065151|ref|YP_003971877.1| dimethyladenosine transferase [Bifidobacterium bifidum PRL2010]
 gi|310867471|gb|ADP36840.1| Dimethyladenosine transferase [Bifidobacterium bifidum PRL2010]
          Length = 313

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 18/283 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ I +   I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L  G
Sbjct: 29  IRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILETG 88

Query: 70  ARKVIVIEKD---QQFFPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRI 121
           A  +  +E D    Q  P    I +  P   NRL +I  DAL +       F+   P  +
Sbjct: 89  A-TMTAVEIDPPVAQRLP--HTIDTYMPDARNRLTVINKDALALTSADLPEFSDDEPFTL 145

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+ T ++   +          S  ++ QKEV +R+TA   S  YG  SV   W 
Sbjct: 146 VANLPYNVATPIILTLLERFD---MLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWY 202

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLK-KITQEAFGKRRKTL 237
             A  + +I  HVF+P+P V S +  F     H  P    L  L  ++   AF +RRKTL
Sbjct: 203 GSAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTL 262

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +LKR+  + + H AGI+   R E L+I++F  +   L  +Q
Sbjct: 263 HAALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 305


>gi|288941310|ref|YP_003443550.1| dimethyladenosine transferase [Allochromatium vinosum DSM 180]
 gi|288896682|gb|ADC62518.1| dimethyladenosine transferase [Allochromatium vinosum DSM 180]
          Length = 263

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 135/266 (50%), Gaps = 27/266 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL D  ++ +I  +  +  G  ++EIG G G +TQ LLT  GA  VI +++D 
Sbjct: 6   RKRFGQNFLHDPLVIDRIHAAIDARPGERLVEIGPGQGAITQGLLTRAGALDVIELDRDL 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              P+ + +       L I   DAL  D     +    +R++ NLPYNI T LLF+++  
Sbjct: 66  -IEPLRQRLGGL--GELRIHNADALDFDLRTLADSEGTLRLVGNLPYNISTPLLFHFLD- 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  + + L+ QKEV ERI A+     YGRLSV+   R  A  +F I P  F P+PK
Sbjct: 122 --QLDALQDMHLMLQKEVVERIAAEPGDKTYGRLSVMIQSRCAAASLFRIGPGAFKPAPK 179

Query: 201 VTST---------VIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           V S          + H I  P L+          +I   AFG+RRKTLR SL  +   ++
Sbjct: 180 VESAFLRLRPLRPLPHPIDDPRLH---------GRIVAAAFGQRRKTLRNSLSGVVDLDI 230

Query: 250 LHQAGIETNLRAENLSIEDFCRITNI 275
           +  AGI+   RAE L +  + R+ N+
Sbjct: 231 IEAAGIDPKRRAEELDVASYTRLANL 256


>gi|313141088|ref|ZP_07803281.1| dimethyladenosine transferase dimethyltransferase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313133598|gb|EFR51215.1| dimethyladenosine transferase dimethyltransferase [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 313

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 18/283 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ I +   I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L  G
Sbjct: 29  IRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILETG 88

Query: 70  ARKVIVIEKD---QQFFPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRI 121
           A  +  +E D    Q  P    I +  P   NRL +I  DAL +       F+   P  +
Sbjct: 89  A-TMTAVEIDPPVAQRLP--HTIDTYMPDARNRLTVINKDALALTSADLPEFSGDEPFTL 145

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+ T ++   +          S  ++ QKEV +R+TA   S  YG  SV   W 
Sbjct: 146 VANLPYNVATPIILTLLERFD---MLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWY 202

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLK-KITQEAFGKRRKTL 237
             A  + +I  HVF+P+P V S +  F     H  P    L  L  ++   AF +RRKTL
Sbjct: 203 GSAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTL 262

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +LKR+  + + H AGI+   R E L+I++F  +   L  +Q
Sbjct: 263 HAALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 305


>gi|291521141|emb|CBK79434.1| dimethyladenosine transferase [Coprococcus catus GD/7]
          Length = 287

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 143/278 (51%), Gaps = 20/278 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           ++  Y+   +K  GQNFL+D ++L KI   +G      V+EIG G G +TQ L    A K
Sbjct: 13  VIKKYEFCFQKKFGQNFLIDGHVLDKIIAGAGVTKDDMVLEIGPGIGTMTQYLAE-AAGK 71

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129
           V+ +E D+   PIL++  + + N +++I  D L +D EK     N   PI+++ANLPY I
Sbjct: 72  VVAVEIDRNLLPILQETLADYDN-VKVIHADVLSLDLEKLVQEENGGRPIKVVANLPYYI 130

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++              ++T++ QKEV  R+ +   S  YG LS+   +  +  ++ +
Sbjct: 131 TTPIIMALFEQHVP---LANVTVMVQKEVAARMKSGPGSKDYGALSLAVQYYAEPYIVAN 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG 246
           +  + F P P V S VI    +  P P  ++  K   KI + +F +RRKTL+  L     
Sbjct: 188 VPCNCFMPRPNVDSAVIRLTRYEEP-PVQVKDEKMLFKIIRASFNQRRKTLQNGLNNSSE 246

Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
            N         + +AG   ++R E L++E F ++T+IL
Sbjct: 247 LNFTKDQIAAAIAEAGFSPSVRGEALTLEQFAKLTDIL 284


>gi|224283936|ref|ZP_03647258.1| dimethyladenosine transferase [Bifidobacterium bifidum NCIMB 41171]
 gi|310288290|ref|YP_003939549.1| Dimethyladenosine transferase [Bifidobacterium bifidum S17]
 gi|309252227|gb|ADO53975.1| Dimethyladenosine transferase [Bifidobacterium bifidum S17]
          Length = 316

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 18/283 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ I +   I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L  G
Sbjct: 32  IRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILETG 91

Query: 70  ARKVIVIEKD---QQFFPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRI 121
           A  +  +E D    Q  P    I +  P   NRL +I  DAL +       F+   P  +
Sbjct: 92  A-TMTAVEIDPPVAQRLP--HTIDTYMPDARNRLTVINKDALALTSADLPEFSGDEPFTL 148

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+ T ++   +          S  ++ QKEV +R+TA   S  YG  SV   W 
Sbjct: 149 VANLPYNVATPIILTLLERFD---MLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWY 205

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLK-KITQEAFGKRRKTL 237
             A  + +I  HVF+P+P V S +  F     H  P    L  L  ++   AF +RRKTL
Sbjct: 206 GSAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTL 265

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +LKR+  + + H AGI+   R E L+I++F  +   L  +Q
Sbjct: 266 HAALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 308


>gi|212637885|ref|YP_002314405.1| dimethyladenosine transferase [Anoxybacillus flavithermus WK1]
 gi|226729751|sp|B7GFH0|RSMA_ANOFW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|212559365|gb|ACJ32420.1| Dimethyladenosine transferase (rRNA methylation) [Anoxybacillus
           flavithermus WK1]
          Length = 295

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 143/282 (50%), Gaps = 22/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL++ NIL +I + +   +   VIEIG G G LT+  L   A
Sbjct: 12  KEILEKYGFSFKKSLGQNFLIEPNILHRIVDFAQLSERTGVIEIGPGIGALTEQ-LARRA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
           +KV+  E DQ+  PIL D  S + N + II +D LK D      E+F ++   I ++ANL
Sbjct: 71  KKVVAFEIDQRLLPILADTLSPYTN-VSIIHEDILKADVQQVIAEQFTDVDD-IMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++ D  P     + ++ QKEV +R+ A+  +  YG L++   + T A 
Sbjct: 129 PYYVTTPIIMKLLT-DRLP--IRGMVVMLQKEVADRMAAKPGTKDYGSLTIAVQYYTHAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241
            +  +   VF P P V S VI  +    P            + + +FG+RRKT+  +L  
Sbjct: 186 TVMHVPRTVFVPKPNVDSAVIRLLKREQPAVSVSNEDFFFAVVRASFGQRRKTILNNLLN 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                  K+   EN L  AGI+   R E L+I +F  ++  L
Sbjct: 246 QLPNGKEKKEQIENALANAGIDPKRRGETLAIAEFATLSEQL 287


>gi|15640470|ref|NP_230097.1| dimethyladenosine transferase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121729955|ref|ZP_01682375.1| dimethyladenosine transferase [Vibrio cholerae V52]
 gi|153830829|ref|ZP_01983496.1| dimethyladenosine transferase [Vibrio cholerae 623-39]
 gi|227080654|ref|YP_002809205.1| dimethyladenosine transferase [Vibrio cholerae M66-2]
 gi|254292213|ref|ZP_04962980.1| dimethyladenosine transferase [Vibrio cholerae AM-19226]
 gi|297580583|ref|ZP_06942509.1| dimethyladenosine transferase [Vibrio cholerae RC385]
 gi|298501025|ref|ZP_07010826.1| dimethyladenosine transferase [Vibrio cholerae MAK 757]
 gi|9654867|gb|AAF93616.1| dimethyladenosine transferase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121628295|gb|EAX60805.1| dimethyladenosine transferase [Vibrio cholerae V52]
 gi|148873688|gb|EDL71823.1| dimethyladenosine transferase [Vibrio cholerae 623-39]
 gi|150421870|gb|EDN13850.1| dimethyladenosine transferase [Vibrio cholerae AM-19226]
 gi|227008542|gb|ACP04754.1| dimethyladenosine transferase [Vibrio cholerae M66-2]
 gi|227012297|gb|ACP08507.1| dimethyladenosine transferase [Vibrio cholerae O395]
 gi|297534999|gb|EFH73834.1| dimethyladenosine transferase [Vibrio cholerae RC385]
 gi|297540273|gb|EFH76333.1| dimethyladenosine transferase [Vibrio cholerae MAK 757]
          Length = 282

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 21/280 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           TM N  H     L H     +K  GQNFL D  I+  I  +     G  ++EIG G G +
Sbjct: 11  TMRNDVH-----LGHKA---RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAI 62

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSP 118
           T+ +      K  VIE D+     L++    HP   ++L I + DA++ DF++    ++ 
Sbjct: 63  TEPV-GREVDKFTVIELDRDLAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNK 117

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           +R+  NLPYNI T L+F+           + +  + QKEV  R+ A   +  YGRL+V+ 
Sbjct: 118 LRVFGNLPYNISTPLMFHLFEFHRD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMA 174

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKT 236
            +  K   + ++ P  F P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT
Sbjct: 175 QYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKT 234

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +R   K L     L   GI   +R ENL++  F  + N L
Sbjct: 235 VRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWL 274


>gi|320120297|gb|EFE28598.2| dimethyladenosine transferase [Filifactor alocis ATCC 35896]
          Length = 286

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 148/277 (53%), Gaps = 14/277 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +LK I   Y     K +GQNFL+D NIL+KI +S+   +   VIE+G G G LT+ L   
Sbjct: 10  TLKEITKKYGFQFTKSLGQNFLVDTNILQKIVDSADIQEEDIVIEVGTGIGTLTRELAK- 68

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPY 127
            A+KV  IE D++  PI+K+ +S + N ++ +  D L+V  E         I++IAN+PY
Sbjct: 69  RAKKVYAIEIDKKLIPIVKETTSNY-NNIDFVNMDFLEVVLEDLIQEKDRKIKVIANIPY 127

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++   + +        ++ L+ QKEV +R++A+ ++  YG LSV   + +    +
Sbjct: 128 YITTPIIMKCLESSLD---ISTILLMIQKEVADRLSAEPSTKAYGSLSVAVQYYSDVEFV 184

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL----K 242
             +S   F+P PKV S ++        I      L  ++ + AF KRRKT+  S+    +
Sbjct: 185 GKVSKSCFYPQPKVDSGIVKLSKKHEYIFVRDRKLFSQVVKSAFAKRRKTISNSMIGFCE 244

Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276
           +   +N+   L ++G +   R E L++E+F  ++N +
Sbjct: 245 QFTKDNVMKALEKSGTDAKRRGETLTVEEFAHLSNCM 281


>gi|147904625|ref|NP_001079850.1| dimethyladenosine transferase 1, mitochondrial [Xenopus laevis]
 gi|82188081|sp|Q7T0W5|TFB1M_XENLA RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|33417098|gb|AAH56010.1| MGC68924 protein [Xenopus laevis]
          Length = 344

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 144/296 (48%), Gaps = 23/296 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  I+  + +  +K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIGEIVKLFNLRAEKQLSQNFLLDLKLTDKIVRRAGNLQNAYVCEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSP-I 119
           G  +++V+EKD +F P LK ++     ++  +  D L    ++ F        +   P +
Sbjct: 77  GVEELLVVEKDTRFIPGLKMLNEASGGKVRTVHGDILTYRMDRAFPKHLIKSWDDEPPNV 136

Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPF---WESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W+   AD   PF      +TL FQ+EV ER+TA   +    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLEQVADRTGPFTYGRTQMTLTFQQEVAERLTASTKNKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S+++ +       F I    F P PKV   V+H  P + P I    + ++K+ +  F  R
Sbjct: 197 SIMSQYLCNVKNCFTIPGRAFIPKPKVDVGVVHLTPFVQPKIEQPFKLVEKVVRCIFQFR 256

Query: 234 RKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           RK     +  L          E +L  A ++  LR   L++  F ++ N+  +  D
Sbjct: 257 RKYCHHGVSILFPEEIRIQLTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312


>gi|262189700|ref|ZP_06048068.1| dimethyladenosine transferase [Vibrio cholerae CT 5369-93]
 gi|262034420|gb|EEY52792.1| dimethyladenosine transferase [Vibrio cholerae CT 5369-93]
          Length = 271

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 133/260 (51%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   GI 
Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGIN 243

Query: 257 TNLRAENLSIEDFCRITNIL 276
             +R ENL++  F  + N L
Sbjct: 244 PGMRPENLTLAQFVALANWL 263


>gi|305665472|ref|YP_003861759.1| dimethyladenosine transferase [Maribacter sp. HTCC2170]
 gi|88710228|gb|EAR02460.1| dimethyladenosine transferase [Maribacter sp. HTCC2170]
          Length = 289

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 141/266 (53%), Gaps = 14/266 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL D +I K+IAE+   +    VIEIG G G LT+ LL      ++ ++ D +
Sbjct: 28  KKHLGQHFLKDESIAKQIAETLSFVGYKNVIEIGPGTGVLTKYLLQ-NEIDLVAMDLDSE 86

Query: 82  FFPILKD-ISSQHP------NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
               L +  + +HP      + L++++ D LK +    F+ S P  I  N PYNI T+++
Sbjct: 87  SIVYLNNNFALEHPEILGKKSSLKVVEADFLKYNLGLLFD-SEPFAITGNFPYNISTQIV 145

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +      P     + +FQKEV ERI A + +  YG LSVLT     A  +F + P V
Sbjct: 146 FKMLELKAQVP---EFSGMFQKEVAERICASEGNKTYGILSVLTQAFYNADYLFTVEPEV 202

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F P PKV S V+  +   +    C E L  ++ + AF +RRKTLR SLK     N+L + 
Sbjct: 203 FDPPPKVHSGVMRLVRKDDFELGCDERLFFRVVKTAFNQRRKTLRNSLKSFDLSNILKED 262

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
            I  + R E L++ +F  +   + D+
Sbjct: 263 AI-FDQRPEQLTVSEFIELAKKIADD 287


>gi|302388630|ref|YP_003824451.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM
           16646]
 gi|302199258|gb|ADL06828.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM
           16646]
          Length = 282

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 148/278 (53%), Gaps = 15/278 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  + I P K +GQ+FL+D   L K+ E++   +   V+EIG G G LT + L   A
Sbjct: 4   RAIMREFGIRPSKRLGQHFLIDEAPLYKMLEAARLNESDEVLEIGPGLGVLT-LELCRRA 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYN 128
           +KV+ +EKD    P+L+ ++  + N + ++++D LK+D EK +        +++ANLPY 
Sbjct: 63  KKVVAVEKDPNLIPVLEKLTKSY-NNICLLREDVLKLDMEKLWREYFDGKFKVVANLPYY 121

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + ++   I+        E   ++ QKEV  R+ A   +  YG LSV         ++ 
Sbjct: 122 ITSPVIMKIINNRH---LIEMAVIMIQKEVAHRLVAAPGNKDYGILSVAVQLYADVDLVC 178

Query: 189 DISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLK-RLG 245
            +    F P PKV S V+  +    + +P   E L  K+ + AFG+RRKT++ SL+ RL 
Sbjct: 179 HVGRSAFLPPPKVDSAVVRLVLKEGSAVPLEDERLFFKVVEAAFGERRKTVKNSLRSRLS 238

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 E  L +AGI+ + RAE L+IE+F  +   + D
Sbjct: 239 LFAGDVEEALERAGIDGSRRAETLTIEEFAALAREIKD 276


>gi|83025311|gb|ABB95748.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 24/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L+  
Sbjct: 4   STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118
           GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +        SP    
Sbjct: 64  GARQVVVIEKDDRFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123

Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173
           IR+++NLP+NI      R + +  + D    +      L FQKEV ERI AQ    +  R
Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 183

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232
           LSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    F  
Sbjct: 184 LSVLCQNYAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243

Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|167038515|ref|YP_001666093.1| dimethyladenosine transferase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256751385|ref|ZP_05492264.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320116911|ref|YP_004187070.1| dimethyladenosine transferase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166857349|gb|ABY95757.1| dimethyladenosine transferase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256749767|gb|EEU62792.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319930002|gb|ADV80687.1| dimethyladenosine transferase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 273

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 16/263 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNF+ D NIL KI  +SG      V+EIG G G LT+ L     +KV+  E D++ +  
Sbjct: 13  GQNFIFDKNILAKIVIASGVAPEDFVLEIGTGLGTLTEELAK-RVKKVVSFEIDRELYEA 71

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADT 142
            K+  + + N + I+ +D +K D  +  N      P +++ANLPY I + ++   +    
Sbjct: 72  TKEKLNIYNNVI-IMNEDIMKADLNRIANEYFEGKPFKVVANLPYYITSPIIMMLLECK- 129

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
              F + +T+L QKEV ERI A   +  YG L+V   ++ K  ++F++ P VF P PKV 
Sbjct: 130 ---FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKILFNLPPSVFVPPPKVD 186

Query: 203 STVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGIETNL 259
           S+++       P+    +      + + AFG+RRK L  +LK LG  + ++ +A   +NL
Sbjct: 187 SSLVKLEILDKPLVEVKDEALFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSNL 246

Query: 260 ----RAENLSIEDFCRITNILTD 278
               R E LSIE+F  + N++ D
Sbjct: 247 SHQRRGETLSIEEFTALANVIYD 269


>gi|121591750|ref|ZP_01678961.1| dimethyladenosine transferase [Vibrio cholerae 2740-80]
 gi|147673129|ref|YP_001218711.1| dimethyladenosine transferase [Vibrio cholerae O395]
 gi|153217221|ref|ZP_01950985.1| dimethyladenosine transferase [Vibrio cholerae 1587]
 gi|153803545|ref|ZP_01958131.1| dimethyladenosine transferase [Vibrio cholerae MZO-3]
 gi|153820212|ref|ZP_01972879.1| dimethyladenosine transferase [Vibrio cholerae NCTC 8457]
 gi|229507082|ref|ZP_04396588.1| dimethyladenosine transferase [Vibrio cholerae BX 330286]
 gi|229508763|ref|ZP_04398255.1| dimethyladenosine transferase [Vibrio cholerae B33]
 gi|229512627|ref|ZP_04402096.1| dimethyladenosine transferase [Vibrio cholerae TMA 21]
 gi|229519750|ref|ZP_04409193.1| dimethyladenosine transferase [Vibrio cholerae RC9]
 gi|229519987|ref|ZP_04409416.1| dimethyladenosine transferase [Vibrio cholerae TM 11079-80]
 gi|229525136|ref|ZP_04414541.1| dimethyladenosine transferase [Vibrio cholerae bv. albensis VL426]
 gi|229530287|ref|ZP_04419675.1| dimethyladenosine transferase [Vibrio cholerae 12129(1)]
 gi|229606262|ref|YP_002876910.1| dimethyladenosine transferase [Vibrio cholerae MJ-1236]
 gi|254850674|ref|ZP_05240024.1| dimethyladenosine transferase [Vibrio cholerae MO10]
 gi|255743826|ref|ZP_05417783.1| dimethyladenosine transferase [Vibrio cholera CIRS 101]
 gi|262147179|ref|ZP_06027985.1| dimethyladenosine transferase [Vibrio cholerae INDRE 91/1]
 gi|262167593|ref|ZP_06035297.1| dimethyladenosine transferase [Vibrio cholerae RC27]
 gi|27151608|sp|Q9KUS2|RSMA_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732637|sp|A5F8N2|RSMA_VIBC3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|121546388|gb|EAX56639.1| dimethyladenosine transferase [Vibrio cholerae 2740-80]
 gi|124113744|gb|EAY32564.1| dimethyladenosine transferase [Vibrio cholerae 1587]
 gi|124120912|gb|EAY39655.1| dimethyladenosine transferase [Vibrio cholerae MZO-3]
 gi|126509241|gb|EAZ71835.1| dimethyladenosine transferase [Vibrio cholerae NCTC 8457]
 gi|146315012|gb|ABQ19551.1| dimethyladenosine transferase [Vibrio cholerae O395]
 gi|229332060|gb|EEN97548.1| dimethyladenosine transferase [Vibrio cholerae 12129(1)]
 gi|229338717|gb|EEO03734.1| dimethyladenosine transferase [Vibrio cholerae bv. albensis VL426]
 gi|229342936|gb|EEO07925.1| dimethyladenosine transferase [Vibrio cholerae TM 11079-80]
 gi|229344439|gb|EEO09414.1| dimethyladenosine transferase [Vibrio cholerae RC9]
 gi|229350304|gb|EEO15255.1| dimethyladenosine transferase [Vibrio cholerae TMA 21]
 gi|229354166|gb|EEO19097.1| dimethyladenosine transferase [Vibrio cholerae B33]
 gi|229355827|gb|EEO20747.1| dimethyladenosine transferase [Vibrio cholerae BX 330286]
 gi|229368917|gb|ACQ59340.1| dimethyladenosine transferase [Vibrio cholerae MJ-1236]
 gi|254846379|gb|EET24793.1| dimethyladenosine transferase [Vibrio cholerae MO10]
 gi|255738575|gb|EET93963.1| dimethyladenosine transferase [Vibrio cholera CIRS 101]
 gi|262023929|gb|EEY42626.1| dimethyladenosine transferase [Vibrio cholerae RC27]
 gi|262031384|gb|EEY49992.1| dimethyladenosine transferase [Vibrio cholerae INDRE 91/1]
 gi|327483299|gb|AEA77706.1| Dimethyladenosine transferase [Vibrio cholerae LMA3894-4]
          Length = 271

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 133/260 (51%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   GI 
Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGIN 243

Query: 257 TNLRAENLSIEDFCRITNIL 276
             +R ENL++  F  + N L
Sbjct: 244 PGMRPENLTLAQFVALANWL 263


>gi|312883920|ref|ZP_07743637.1| dimethyladenosine transferase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368378|gb|EFP95913.1| dimethyladenosine transferase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 268

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 137/260 (52%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GKEVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP+   +L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPDLGEKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVMPVLEVPPSAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P+ + P P   L+ L ++ +E F +RRKT+R   K L   ++L + GI 
Sbjct: 184 PKVDSAVVRLTPYEDLPHPVADLKWLDRVCREGFNQRRKTVRNCYKGLLDTDVLEELGIN 243

Query: 257 TNLRAENLSIEDFCRITNIL 276
            ++R ENL++E F  + N L
Sbjct: 244 PSMRPENLTLEQFVSMANWL 263


>gi|309787289|ref|ZP_07681901.1| dimethyladenosine transferase [Shigella dysenteriae 1617]
 gi|308924867|gb|EFP70362.1| dimethyladenosine transferase [Shigella dysenteriae 1617]
          Length = 249

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 130/253 (51%), Gaps = 18/253 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
           ++  I  +     G  ++EIG G   LT+    +G R  ++ VIE D+     L+     
Sbjct: 1   MIDSIVSAINPQKGQAMVEIGPGLAALTE---PVGERLDQLTVIELDRDLAARLQT---- 53

Query: 93  HP---NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           HP    +L I Q DA+  +F +    +  P+ +  NLPYNI T L+F+  S   +     
Sbjct: 54  HPFLGPKLTIYQQDAMTFNFGELAEKMGQPLHVFGNLPYNISTPLMFHLFS---YTDAIA 110

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
            +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PKV S V+  
Sbjct: 111 DMHFMLQKEVVNRLVAGPNSKVYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL 170

Query: 209 IPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI 266
           +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+  +RAEN+S+
Sbjct: 171 VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISV 230

Query: 267 EDFCRITNILTDN 279
             +C++ N L +N
Sbjct: 231 AQYCQMANYLAEN 243


>gi|303241033|ref|ZP_07327543.1| dimethyladenosine transferase [Acetivibrio cellulolyticus CD2]
 gi|302591458|gb|EFL61196.1| dimethyladenosine transferase [Acetivibrio cellulolyticus CD2]
          Length = 279

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 143/277 (51%), Gaps = 19/277 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y I   K +GQNFL D  ++ +I +++       V+EIG G G++T  L +  A
Sbjct: 6   KELIKKYGIKLTKSLGQNFLTDDKVVTRIVDTAEITYDDLVMEIGPGIGSMTGELASR-A 64

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYN 128
            KV+ +E D+   P LK+   +  N LEII +D +KV+ +       +  +++ ANLPY 
Sbjct: 65  GKVVAVEIDKYLIPALKENLKEFSN-LEIINEDIMKVNVKDITVNGQNMRVKVAANLPYY 123

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++   +  +      E +  + QKEV +R+ A+     YG LSV   +  +   +F
Sbjct: 124 ITTPIIMKLLEEEND---IELMVFMVQKEVAQRMVAKPGGKDYGALSVAVQYYAQPEKVF 180

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLG 245
           D+ PH F P P+V ST++    +  P P  L+      K+ + +FG+RRKTL  +L   G
Sbjct: 181 DVPPHCFVPQPEVDSTIVKLKKNKMP-PVDLKDKDMFFKVVKASFGQRRKTLLNALTNFG 239

Query: 246 GEN--------LLHQAGIETNLRAENLSIEDFCRITN 274
           G N        +L +  I  N R E LSIE F  ++N
Sbjct: 240 GFNKSKEEIREILIKLNINENARGETLSIEQFASLSN 276


>gi|325478267|gb|EGC81386.1| dimethyladenosine transferase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 280

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 143/274 (52%), Gaps = 13/274 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K I   Y     K +GQNFL+D N + KI +++  + G  VIEIG G G +T  +  + 
Sbjct: 10  VKEITDLYSFRFSKSLGQNFLVDKNFVDKIVDAA-DVSGENVIEIGPGIGTITYEMAKV- 67

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLP 126
           A+KV+ IE D    PI+++   +  N  ++I +D LK D EK           ++++NLP
Sbjct: 68  AKKVVAIEIDDSLIPIIEENMVEFDN-FDLIHEDILKADLEKIVAEEFAGESFKVVSNLP 126

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++   ++++  P   + +T++ QKEV +R+ A +    Y  LSV   + + A  
Sbjct: 127 YYITTPIIEKLVTSN-LP--CKDMTIMVQKEVADRMLATEKDKEYSSLSVFVKYYSDAKK 183

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           + ++   VF P PK+ STV+               L  +    F KRRKT+  SL  +  
Sbjct: 184 VTNVPKSVFMPQPKIDSTVLKLELRKYTDDVDEAKLFSLIHAGFNKRRKTILNSLSDVVE 243

Query: 247 ENLLHQA----GIETNLRAENLSIEDFCRITNIL 276
           ++ L  A    GI+ NLRAENLS++DF  +  I+
Sbjct: 244 KDKLRLAFEKLGIKNNLRAENLSLDDFINLAKII 277


>gi|323690920|ref|ZP_08105212.1| ribosomal RNA small subunit methyltransferase A [Clostridium
           symbiosum WAL-14673]
 gi|323505045|gb|EGB20815.1| ribosomal RNA small subunit methyltransferase A [Clostridium
           symbiosum WAL-14673]
          Length = 292

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 143/279 (51%), Gaps = 20/279 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y    +K  GQNFL+D ++L KI  ++G      V+EIG G G +TQ L    A +
Sbjct: 14  IIQKYNFAFQKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMTQYLAE-NAGR 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129
           V+ +E D    PIL++    + N + II +D LK+D  K    +N   PI+++ANLPY I
Sbjct: 73  VVAVEIDSNLIPILEETLKDYDN-ITIINEDILKLDINKLAQEYNGGRPIKVVANLPYYI 131

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     +       +++T++ QKEV +R+     +  YG LS+   +  +  ++ +
Sbjct: 132 TTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGTKDYGALSLAVQYYAEPYIVAN 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGG 246
           + P+ F P P V S VI    H  P P  +   E + K+ + +F +RRKTL   L     
Sbjct: 189 VPPNCFIPRPNVGSAVIRLTRHRTP-PVEVDDRELMFKLIRASFNQRRKTLLNGLNNSPE 247

Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNILT 277
            N+        +   G+  ++R E L+++ F  + N+L+
Sbjct: 248 INISKEKIAEAIEALGVSASVRGEALTLKQFAELANLLS 286


>gi|222112630|ref|YP_002554894.1| dimethyladenosine transferase [Acidovorax ebreus TPSY]
 gi|254807865|sp|B9MIF6|RSMA_ACIET RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|221732074|gb|ACM34894.1| dimethyladenosine transferase [Acidovorax ebreus TPSY]
          Length = 253

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 138/265 (52%), Gaps = 24/265 (9%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+  LG  ++ V+
Sbjct: 2   KHIPRKRFGQHFLSDSGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLG--RLTVV 59

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSP-IRIIANLPYNIGTRLL 134
           E D+     L+    QH  +L++I+ D LKVDF +    +++P IR++ NLPYNI T +L
Sbjct: 60  ELDRDLAARLR----QH-GQLDVIESDVLKVDFAQVAQALNAPKIRVVGNLPYNISTPIL 114

Query: 135 FNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           F+ ++     AD           + QKEV +R+ A   +  YGRLSV+  WR     +  
Sbjct: 115 FHLLAHVRVIADQ--------HFMLQKEVIDRMVAAPATSAYGRLSVMLQWRYAMENVLF 166

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P P+V S V+  +PH  P    +  L+++ Q AF +RRK LR +L R   E  
Sbjct: 167 VPPESFDPPPRVDSAVVRMVPHEAPEALSMPVLEELVQVAFSQRRKLLRHTLGRW-LEAR 225

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
                 +T  RAE + + ++  +  
Sbjct: 226 QFAGTFDTQRRAEEVPVSEYVALAQ 250


>gi|293603517|ref|ZP_06685938.1| dimethyladenosine transferase [Achromobacter piechaudii ATCC 43553]
 gi|292817953|gb|EFF77013.1| dimethyladenosine transferase [Achromobacter piechaudii ATCC 43553]
          Length = 261

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 134/263 (50%), Gaps = 15/263 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D ++++ I  +        V+EIG G   LT+ LL      +  +E D+ 
Sbjct: 7   RKRFGQNFLTDESVVESIVRAVAPARDDAVVEIGPGLSALTRPLLE-RLDHLTAVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+       +RL +++ DAL VDF +F    S +R++ NLPYNI + LLF+ +   
Sbjct: 66  LAARLR--KQFEASRLTVVEADALTVDFSQF---GSALRVVGNLPYNISSPLLFHLM--- 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           TW         + Q+EV +R+ AQ  S  + RLSV+   R +   +FD+ P  F P PKV
Sbjct: 118 TWADHIRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDPPPKV 177

Query: 202 TSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            S ++  +P     L P+   + + + +   AF +RRK LR+ L     +       I  
Sbjct: 178 VSAIVRMVPLPADRLQPV--SVRAFETVVARAFSQRRKMLRRVLADWAPQVPWEALDIAP 235

Query: 258 NLRAENLSIEDFCRITNILTDNQ 280
             RAE++S++ + R+++ L + +
Sbjct: 236 TARAEDISVDRYIRLSDALVEAK 258


>gi|260437839|ref|ZP_05791655.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876]
 gi|292809864|gb|EFF69069.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876]
          Length = 287

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 152/292 (52%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M ++N +++L  I  H     KK+ GQNFL+D  I+ KI   +G      V+EIG G G 
Sbjct: 1   MYLSNPTNTLAVINKHEFAFQKKF-GQNFLIDEGIVNKIVREAGVTKDDFVLEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           +TQ LL   A  V  +E D    PILK+  +++ N + II +D LKVD +K     N   
Sbjct: 60  MTQ-LLCEQAGGVAAVEIDTNLIPILKETLAEYDN-VTIINEDILKVDIKKLAEEKNGGK 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T ++     ++      +S+T++ QKEV +R+     +  YG LS+ 
Sbjct: 118 PIKVVANLPYYITTPIIMGLFESNVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLA 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRR 234
             + +K  ++ ++ P  F P P V S VI    +  P P  ++  K   K+ + +F +RR
Sbjct: 175 VQYYSKPQVVINVPPECFIPRPNVGSAVIRLTRYKEP-PVKVKDEKLMFKLIRASFNQRR 233

Query: 235 KTLRQSLKRLGGENLLHQ---AGIET-----NLRAENLSIEDFCRITNILTD 278
           KTL   L      N   +   A IE+     ++R E L++ +F  +++  ++
Sbjct: 234 KTLANGLNNSPEINFSKEEITAAIESLHKGPSIRGEALTLSEFAALSDYFSN 285


>gi|258623405|ref|ZP_05718409.1| dimethyladenosine transferase [Vibrio mimicus VM573]
 gi|262172456|ref|ZP_06040134.1| dimethyladenosine transferase [Vibrio mimicus MB-451]
 gi|258584371|gb|EEW09116.1| dimethyladenosine transferase [Vibrio mimicus VM573]
 gi|261893532|gb|EEY39518.1| dimethyladenosine transferase [Vibrio mimicus MB-451]
          Length = 272

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 133/260 (51%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   GI 
Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEALGIN 243

Query: 257 TNLRAENLSIEDFCRITNIL 276
             +R ENL++  F  + N L
Sbjct: 244 PGMRPENLTLAQFVALANWL 263


>gi|332884271|gb|EGK04539.1| ribosomal RNA small subunit methyltransferase A [Dysgonomonas
           mossii DSM 22836]
          Length = 265

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 136/260 (52%), Gaps = 9/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL+I ++IA++      + VIE+G G G LTQ L+    + + V+E 
Sbjct: 4   VKPKKFLGQHFLKDLDIARRIADTLDDFTDVPVIEVGPGMGVLTQFLIE-KEKGLTVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   P L D       R  I++ D L +D    +  S    +I N PYNI +++ F  +
Sbjct: 63  DRDSVPYLNDHYPALHGR--IVEGDFLTLDLSAIY--SDKFCVIGNYPYNISSQIFFKVL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +       + + QKEV ERI A+     YG LSVL         +F +S  VF P 
Sbjct: 119 E---YKNKVLCCSGMLQKEVAERIAAKPGGKTYGILSVLLQAWYDIEYLFTVSEKVFDPP 175

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S V+  + +      C E L K + +  F +RRKTLR S+K L G++    A    
Sbjct: 176 PKVKSAVVKLVRNKRGHLDCDEKLFKTVVKTGFNQRRKTLRNSMKPLLGKDCEAYADPIF 235

Query: 258 NLRAENLSIEDFCRITNILT 277
           + R E LS+ DF ++TNI++
Sbjct: 236 DERPERLSVADFEKLTNIVS 255


>gi|289663557|ref|ZP_06485138.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 262

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 134/265 (50%), Gaps = 12/265 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73
           S +    KK +GQ+FL D   + +I ++     G  ++EIG G G +T  +L   GA  +
Sbjct: 3   SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGA--L 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D+     L + ++     L II  D L VDF    +  +PIR++ NLPYNI + +
Sbjct: 61  TVIEFDRDLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPI 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +           +  + QKEV +R+ A   S  YGRLSV+     + T +F + P 
Sbjct: 119 LFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250
            F P PKV S V+  +P  +P    +   ++   + +  FG+RRKTLR +L  +      
Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVQINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             A +  + RAE L + DF R+ N+
Sbjct: 235 EAAQVRPDARAEQLEVADFIRLANV 259


>gi|258627053|ref|ZP_05721851.1| dimethyladenosine transferase [Vibrio mimicus VM603]
 gi|258580727|gb|EEW05678.1| dimethyladenosine transferase [Vibrio mimicus VM603]
          Length = 272

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 133/260 (51%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELASKLTIHEGDAMRFDFKQLVRPNNKLRVFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   GI 
Sbjct: 184 PKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEALGIN 243

Query: 257 TNLRAENLSIEDFCRITNIL 276
             +R ENL++  F  + N L
Sbjct: 244 PGMRPENLTLAQFVALANWL 263


>gi|238855589|ref|ZP_04645891.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3]
 gi|260664781|ref|ZP_05865632.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US]
 gi|282932725|ref|ZP_06338133.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1]
 gi|238831806|gb|EEQ24141.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3]
 gi|260561264|gb|EEX27237.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US]
 gi|281303135|gb|EFA95329.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1]
          Length = 294

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 146/283 (51%), Gaps = 22/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69
           K I++ Y    KK +GQNFL+ LN +  I +++  +DG   V+EIG G G+LT+ +L  G
Sbjct: 14  KAIMNRYLGFAKKNLGQNFLISLNKINDILDAA-EIDGDDQVLEIGPGIGSLTEQMLLRG 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQH------PNRLEIIQDDALKVDFE----KFFNISSPI 119
           A KV+  E DQ    IL +   Q        +  +++  D LK DF+     FF+++ P+
Sbjct: 73  A-KVLAYEIDQDLPEILHNELPQKIGDKYLDDVFKLVMKDILKADFKADIGNFFDLNKPV 131

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++F    +D     +ESLTL+ QKEV ER+ A   +  YG L++   
Sbjct: 132 KVVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQ 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLR 238
            +    M   +    F P PKV S V+   P +  +     ++   + +  F +RRKTL 
Sbjct: 189 TQMSVKMAVMVDHTNFNPQPKVDSAVVVLKPLVQKVDVGDTDNFDHVVKMCFSQRRKTLN 248

Query: 239 QSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276
            +LK L  ++     LL    +   +R E LSI+ F  +   L
Sbjct: 249 NNLKSLVKDSEERKKLLQMLDLPEKVRPEELSIDQFIGLAKAL 291


>gi|291457904|ref|ZP_06597294.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291419448|gb|EFE93167.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 291

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 142/271 (52%), Gaps = 26/271 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL+D ++L+ I  +S       V+EIG G G LTQ L    ARKVI +E D++
Sbjct: 22  QKRFGQNFLIDESVLRDILAASEITREDCVLEIGPGIGTLTQALCE-SARKVIAVELDKK 80

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNIGTRLLFNWI 138
             PIL++  S + N L +IQ DAL++D  K     N   PI++ ANLPY I + +L + +
Sbjct: 81  LIPILEENLSAYDN-LRLIQGDALRLDLTKLIGEENDGHPIKVAANLPYYITSPILMSLL 139

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             ++  P   S+T++ Q+EV +R+ A   +  YG LS+   +  K  ++  ++   F P 
Sbjct: 140 --ESRAPI-RSITIMVQREVADRMRALPGTKSYGALSLAVQYYAKIDLIRTVASSCFLPR 196

Query: 199 PKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG------- 246
           P V S V+        P  NP       L ++ + AF  RRKTL  +L   GG       
Sbjct: 197 PNVDSAVVKLTLRSETPE-NPEEKAF--LFRLIRSAFATRRKTLANALS--GGLSLPKER 251

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            E  L + G+  N+R E LS+  F  ++ +L
Sbjct: 252 TEEALRELGLSENIRGEALSLSQFSALSALL 282


>gi|332704211|ref|ZP_08424299.1| Ribosomal RNA small subunit methyltransferase A [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554360|gb|EGJ51404.1| Ribosomal RNA small subunit methyltransferase A [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 265

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 139/271 (51%), Gaps = 20/271 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K   K+ +GQNFL D NI +KI  +    +G TV+EIG G G LT+ L    A++V+ +E
Sbjct: 7   KPFAKRSLGQNFLQDENIARKIVAALELQEGDTVVEIGPGRGALTRWLDESPAQRVLALE 66

Query: 78  KDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           KD       KD++ Q    HP R+EI+  DAL+  +E+   + S ++ I NLPYNI + L
Sbjct: 67  KD-------KDLAQQLGMVHP-RVEIVVADALRYSWEELAGVES-LKYIGNLPYNIASPL 117

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           ++  +S     P +     + Q EVG R+TA   +  YG LS           +F + P 
Sbjct: 118 MWEIVSRS---PRYSRAVFMVQHEVGLRLTACPGNKSYGALSAWIQSFANVRYLFRVPPQ 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           VF P PKV S V+ F P    I P     L K+    F KRRK LR  L+   GE +   
Sbjct: 175 VFRPKPKVDSAVLCFEPLAKEIRPTHPALLAKLLHICFQKRRKQLRNILRDWWGERVGTS 234

Query: 253 AGIETNL---RAENLSIEDFCRITNILTDNQ 280
           AG    L   R E L+ ++F R+  ++  ++
Sbjct: 235 AGEFIKLAEARPEELTPKEFQRLALLIWGDE 265


>gi|163814787|ref|ZP_02206176.1| hypothetical protein COPEUT_00938 [Coprococcus eutactus ATCC 27759]
 gi|158450422|gb|EDP27417.1| hypothetical protein COPEUT_00938 [Coprococcus eutactus ATCC 27759]
          Length = 287

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 150/290 (51%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           ++N   +++TI   Y+   +K  GQNFL+D +++ KI  ++       V+EIG G G +T
Sbjct: 4   LSNPQVTIETI-KKYEFAFQKKFGQNFLIDSHVINKIISAADITKDDCVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    A +V+ +E D+   PIL +  +++ N + +I DD LKVD  K     N   PI
Sbjct: 63  QYLAE-SAGQVVAVEIDKNLLPILDETLAEYDN-VTVINDDILKVDINKIVEERNGGRPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++          P   S+T++ QKEV +R+     +  YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFEKHV--PLL-SVTVMVQKEVADRMQVGPGTKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKT 236
           +  +  ++ ++ P+ F P P V S VI       P P  ++    + ++ + +F +RRKT
Sbjct: 178 YYAEPYIVANVPPNCFIPRPGVGSAVIRLTRFQEP-PVKVKDEQLMFRLIRASFNQRRKT 236

Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L+  +   G            L   GI  N+R E+L + +F  +++IL+D
Sbjct: 237 LQNGIANSGELSFTKEEVAKALESLGISANIRGESLGLAEFAALSDILSD 286


>gi|184154665|ref|YP_001843005.1| dimethyladenosine transferase [Lactobacillus fermentum IFO 3956]
 gi|227514301|ref|ZP_03944350.1| dimethyladenosine transferase [Lactobacillus fermentum ATCC 14931]
 gi|183226009|dbj|BAG26525.1| dimethyladenosine transferase [Lactobacillus fermentum IFO 3956]
 gi|227087349|gb|EEI22661.1| dimethyladenosine transferase [Lactobacillus fermentum ATCC 14931]
          Length = 295

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 148/287 (51%), Gaps = 22/287 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y I  KK  GQNFL + ++L  I  ++G      VIEIG G G LT+ L    A
Sbjct: 12  RAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKLAQ-AA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANL 125
            +V+ +E D+   P+L D+ + + N + ++  D LK +        F + + P++++ANL
Sbjct: 71  GEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVKVVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + +LF  +++      W ++ ++ QKEV +R+ A+  +  YG L++   +R    
Sbjct: 130 PYYITSPILFALLASQVE---WAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDYRMDVK 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQSLK 242
           + F++S   F P+P V S ++        +P      + L  + +  F  RRK+L  +LK
Sbjct: 187 VAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFGLIRGCFAHRRKSLWNNLK 246

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            + G++         +L +  I++  R E LS+ DF  + N + + +
Sbjct: 247 TIVGKDEDRLGKVKEVLDRLEIDSQTRPERLSLVDFINLANAMHEKE 293


>gi|254520467|ref|ZP_05132523.1| dimethyladenosine transferase [Clostridium sp. 7_2_43FAA]
 gi|226914216|gb|EEH99417.1| dimethyladenosine transferase [Clostridium sp. 7_2_43FAA]
          Length = 281

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 141/270 (52%), Gaps = 14/270 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           ++  Y     K +GQNFL+D ++ + I   +   +   VIEIG G G LT  LL   A+K
Sbjct: 11  LVKKYNFKFSKSLGQNFLIDDSVPRDIVAGAEVDENDLVIEIGPGVGTLTAQLLN-KAKK 69

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V+ IE D    PIL      +P +  +I  DALKV+F +       ++++ANLPY + T 
Sbjct: 70  VVAIELDNDLIPILNQEIGDNP-KFTLIHKDALKVNFNEIIGEEKSVKLVANLPYYVTTP 128

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++   +        ++SLT++ QKEV ER+ A   +  YG LS+L  +     ++  + P
Sbjct: 129 IIVKLLKEGYN---FKSLTIMIQKEVAERMNANPGNKDYGSLSLLVQYYCNTKIVRRVPP 185

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLG--GE 247
             F P PKV S VI  +  L+     +E+ K    I + +F  RRKTL   +K +G   E
Sbjct: 186 QCFIPRPKVDSIVIR-LDKLSEPKVKVENEKLFFDIIRNSFNMRRKTLWNGVKNIGLSKE 244

Query: 248 NL---LHQAGIETNLRAENLSIEDFCRITN 274
           NL    ++A I+   R E L+IE+F  +++
Sbjct: 245 NLELAFNEANIDPKRRGETLTIEEFATLSD 274


>gi|83025313|gb|ABB95749.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 24/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + +L  Y I  K+ + QNF LD   L KIA ++G L G TV+EIG GPG +T+ L+  
Sbjct: 4   STRDLLRLYGIRSKRSLSQNFXLDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118
           GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +        SP    
Sbjct: 64  GARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123

Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173
           IR+++NLP+NI      R + +  + D    +      L FQKEV ERI AQ    +  R
Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 183

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232
           LSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    F  
Sbjct: 184 LSVLCQNYAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243

Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           ++KT+R+++  L   +N L +A        I+ N  A +L + DF +I     D  D
Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIQPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|218283941|ref|ZP_03489809.1| hypothetical protein EUBIFOR_02405 [Eubacterium biforme DSM 3989]
 gi|218215520|gb|EEC89058.1| hypothetical protein EUBIFOR_02405 [Eubacterium biforme DSM 3989]
          Length = 289

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 141/275 (51%), Gaps = 17/275 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I   YK+  KK  GQNF+++  +++KIA ++       V EIG G G LTQ L    +
Sbjct: 12  KEIQEKYKVFTKKSFGQNFIIEPGVVEKIANAAIQSRDELVFEIGPGIGALTQFLCE-KS 70

Query: 71  RKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDF-EKFFNISSP---IRIIANL 125
            +V+  E D++   +L+ +I   H   L+I+ +D LKVD  EK      P   +   +NL
Sbjct: 71  DQVVAFEIDERLPVVLENEIGFDH---LQIVLEDILKVDIDEKIREFRKPGQKVVFASNL 127

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +LF    A+      E +T++ QKEVGER  A +N   Y  LSV+T +R    
Sbjct: 128 PYYITTPILFKLFEANEE---IERITVMMQKEVGERFLAHENDKEYNALSVITQYRCDVK 184

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--- 242
            + D+S  VF+PSP V S VI F  H             + +  F +RRKT+  + +   
Sbjct: 185 KVMDVSRRVFWPSPNVDSMVIQFSFHHKYHLEDENYFFDLVKACFTQRRKTIYNNFQNFV 244

Query: 243 --RLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
             +   + LL Q  I+ + RA+  ++EDF R+  +
Sbjct: 245 KDKTLAKQLLEQVNIDPSTRAQQCTLEDFIRLYGV 279


>gi|83025307|gb|ABB95746.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 24/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L+  
Sbjct: 4   STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118
           GAR+V+VIEKD +F   L+ +    P R+ I   D LKV+  KF +        SP    
Sbjct: 64  GARQVVVIEKDARFLGPLRLLQEAAPGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123

Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWESLTLL-FQKEVGERITAQKNSPHYGR 173
           IR+++NLP+NI      R + +  + D    +     +L FQKEV ERI A     +  R
Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAPPGDRNRSR 183

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232
           LSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    F  
Sbjct: 184 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243

Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|297621735|ref|YP_003709872.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044]
 gi|297377036|gb|ADI38866.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044]
          Length = 283

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 144/276 (52%), Gaps = 19/276 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           + ++N S  L+  L    I PKK + QNFL+D NI+ KI   +       V+EIG GPG 
Sbjct: 10  LRLSNPSQ-LRQYLEILGISPKKSLSQNFLIDGNIIDKIISLAEINAQDQVLEIGPGPGA 68

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  L   GAR V+ +EKD+    IL     +    + +I +D LKVD EK   +S    
Sbjct: 69  LTDALHQHGAR-VLAVEKDR----ILAKALQERGGDIRVICEDVLKVDLEK--ELSERAT 121

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +IANLPYNI + +L + +        ++ + ++ Q EV ER+TA   +  YG L+V +  
Sbjct: 122 VIANLPYNITSPILTSLLPKTH---VFKRIVVMVQLEVAERLTASPGNKTYGSLTVFSNL 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLR 238
            +     F +S   FFP P V S V+ F   L+P P  +  E+  ++ + AFG+RRK L+
Sbjct: 179 FSTPQWGFKVSRRCFFPEPNVDSAVVRF--DLSPPPKEVEDEAFFQLIRTAFGQRRKMLK 236

Query: 239 QSLKRLGGENLLHQA----GIETNLRAENLSIEDFC 270
            SLK+L   + + QA    G +   R E LS   F 
Sbjct: 237 SSLKKLYPSSSVMQALAGIGFQETARPEELSSNQFV 272


>gi|118602555|ref|YP_903770.1| dimethyladenosine transferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567494|gb|ABL02299.1| dimethyladenosine transferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 250

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/251 (36%), Positives = 134/251 (53%), Gaps = 13/251 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQNFL+D  I+ +I  +        ++EIG G G +T  LL     ++ VIE D+  
Sbjct: 6   KRFGQNFLVDHRIIDRIIATIAPKRDDNLLEIGPGQGAITLPLLDY-VDQLNVIEIDRNL 64

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             IL+  S +H N L + Q D LK D      +  PIR+I NLPYNI + +LF  +    
Sbjct: 65  ISILE--SLKHSN-LIVHQGDVLKFDLNV---VPIPIRVIGNLPYNISSHVLFYLLKNLN 118

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                + +T + QKEV ERI A   S  YGRLSV+        M+F + P  F P+P+V 
Sbjct: 119 K---IKDMTFMLQKEVVERIAANNGSKIYGRLSVMMQAFFDVQMIFIVPPESFNPAPRVE 175

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S V+H  P   P    ++ L+K+ + AF +RRKTL+  LK +  +    Q  I+ + RAE
Sbjct: 176 SAVVHLKPLTQPKTKDIKILEKVVKLAFSQRRKTLKNCLKSILTQK---QTNIDLSQRAE 232

Query: 263 NLSIEDFCRIT 273
            L+I++F  +T
Sbjct: 233 MLTIDNFITLT 243


>gi|323483571|ref|ZP_08088956.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum
           WAL-14163]
 gi|323403127|gb|EGA95440.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum
           WAL-14163]
          Length = 292

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 143/279 (51%), Gaps = 20/279 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y    +K  GQNFL+D ++L KI  ++G      V+EIG G G +TQ L    A +
Sbjct: 14  IIQKYNFAFQKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMTQYLAE-NAGR 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129
           V+ +E D    PIL++    + N + +I +D LK+D  K    +N   PI+++ANLPY I
Sbjct: 73  VVAVEIDSNLIPILEETLKDYDN-ITVINEDILKLDINKLAQEYNGGRPIKVVANLPYYI 131

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     +       +++T++ QKEV +R+     +  YG LS+   +  +  ++ +
Sbjct: 132 TTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGTKDYGALSLAVQYYAEPYIVAN 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGG 246
           + P+ F P P V S VI    H  P P  +   E + K+ + +F +RRKTL   L     
Sbjct: 189 VPPNCFIPRPNVGSAVIRLTRHRTP-PVEVDDRELMFKLIRASFNQRRKTLLNGLNNSPE 247

Query: 247 ENL--------LHQAGIETNLRAENLSIEDFCRITNILT 277
            N+        +   G+  ++R E L+++ F  + N+L+
Sbjct: 248 INISKEKIAEAIEALGVSASVRGEALALKQFAELANLLS 286


>gi|303231892|ref|ZP_07318601.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513421|gb|EFL55454.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6]
          Length = 284

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 141/269 (52%), Gaps = 13/269 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ +I +++   +G  V+EIG G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQGLAQSGA-N 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D +   +L    +Q+ N + I+  D LK+D     +   P +++ANLPY I T 
Sbjct: 74  VTAIELDTRLLEVLDTTLAQYSN-VTIVHGDVLKLDVPSIMH-HEPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + +  ++  P  E L ++ QKEV  R+ A+  +  YG LSV   + TK  ++ D+ P
Sbjct: 132 IIMSLL--ESRLPI-ERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTKPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246
             F P+P VTS+VI  +     P+    E L  ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFANTMKTTGLSKDR 248

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274
            E LL +A I+   R E  ++++F  + N
Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277


>gi|325928235|ref|ZP_08189440.1| dimethyladenosine transferase [Xanthomonas perforans 91-118]
 gi|325541395|gb|EGD12932.1| dimethyladenosine transferase [Xanthomonas perforans 91-118]
          Length = 262

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 12/265 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKV 73
           S +    KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL   GA  +
Sbjct: 3   SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRRHGA--L 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D+     L + ++     L II  D L VDF    +  +PIR++ NLPYNI + +
Sbjct: 61  TVIEFDRDLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPI 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +           +  + QKEV +R+ A   S  YGRLSV+     + T +F + P 
Sbjct: 119 LFHALDHAAA---VTDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250
            F P PKV S V+  +P  +P    +   ++   + +  FG+RRKTLR +L  +      
Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVQINDRRRFADVVRAGFGQRRKTLRNALSTICEPAHF 234

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             A +  + RAE L + DF R+ N+
Sbjct: 235 DAAQVRPDARAEQLEVADFIRLANV 259


>gi|291562910|emb|CBL41726.1| dimethyladenosine transferase [butyrate-producing bacterium SS3/4]
          Length = 288

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 146/279 (52%), Gaps = 18/279 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y+ + +K  GQNFL+D ++L+KI  ++G      V+EIG G G +TQ L    A  
Sbjct: 13  IIQKYEFMFQKKFGQNFLIDTHVLEKIISAAGITKNDCVLEIGPGIGTMTQYLAE-NAGH 71

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNI 129
           V+ +E D+   PILK+  + + N + +I +D L+VD +     +N   PI+++ANLPY I
Sbjct: 72  VVAVEIDRNLIPILKETLADYDN-VTVINEDILRVDIKALAEEYNGGKPIKVVANLPYYI 130

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     +       +++T++ QKEV +R+     S  YG LS+   +  +  ++ +
Sbjct: 131 TTPIIMGLFESGVP---IDNITVMVQKEVADRMKEGPGSKDYGALSLAVQYYAEPEIVAN 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG- 246
           + P+ F P P V S VI    H   P+     +L  KI + +F +RRKTL+  L      
Sbjct: 188 VPPNCFIPRPNVGSAVIRLTRHKEMPVEVKDPALMFKIIRASFNQRRKTLQNGLGNAPEL 247

Query: 247 -------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                     + + G+   +R E LS+  F ++++IL +
Sbjct: 248 PYTKEQIAAAIAEMGLTPTIRGEALSLAQFAQLSDILGE 286


>gi|166710725|ref|ZP_02241932.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 262

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 133/265 (50%), Gaps = 12/265 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73
           S +    KK +GQ+FL D   + +I ++     G  ++EIG G G +T  +L   GA  +
Sbjct: 3   SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGA--L 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D+     L + ++     L II  D L VDF    +  +PIR++ NLPYNI + +
Sbjct: 61  TVIEFDRDLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPI 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +           +  + QKEV +R+ A   S  YGRLSV+       T +F + P 
Sbjct: 119 LFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCDVTALFVVPPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250
            F P PKV S V+  +P  +P    +   ++   + +  FG+RRKTLR +L  +      
Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVHINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             A +  + RAE L + DF R+ N+
Sbjct: 235 EAAQVRPDARAEQLEVADFIRLANV 259


>gi|325264298|ref|ZP_08131029.1| dimethyladenosine transferase [Clostridium sp. D5]
 gi|324030369|gb|EGB91653.1| dimethyladenosine transferase [Clostridium sp. D5]
          Length = 303

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 147/290 (50%), Gaps = 21/290 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y    +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 14  TLGNPQNTI-AVLHRYNFAFQKKFGQNFLIDTHVLDKIIRSAEISRDDMVLEIGPGIGTM 72

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ  L   A KVI +E D+   PIL+D      N + ++ +D LKVD  +     N   P
Sbjct: 73  TQ-YLACAAGKVIAVEIDRALIPILEDTLDGFDN-VTVLNEDILKVDIAELAERENGGRP 130

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++             +S+T++ QKEV ER+     +  YG LS+  
Sbjct: 131 IKVVANLPYYITTPIIMGLFEKHVP---VKSITVMVQKEVAERMQVGPGTKDYGALSLAV 187

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRK 235
            +  K  ++ ++ P+ F P PKV S VI    +  P P  ++  +   +I + +F +RRK
Sbjct: 188 QYYAKPYIVANVPPNCFMPRPKVGSAVICLERYEKP-PVQVDDERLMFRIIRASFNQRRK 246

Query: 236 TLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           TL   +K        +   E  +   G    +R E L++E+F  +TN L+
Sbjct: 247 TLANGMKNSPELDYTKEQIEAAIESLGRGAGVRGEALTLEEFAALTNALS 296


>gi|83025305|gb|ABB95745.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 24/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L+  
Sbjct: 4   STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118
           GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +        SP    
Sbjct: 64  GARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123

Query: 119 IRIIANLPYNI----GTRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173
           IR+++NLP+NI      R + +  + D    +      L FQKEV ERI AQ    +  R
Sbjct: 124 IRLVSNLPFNITMPFXVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 183

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232
           LSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    F  
Sbjct: 184 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243

Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|290974683|ref|XP_002670074.1| predicted protein [Naegleria gruberi]
 gi|284083629|gb|EFC37330.1| predicted protein [Naegleria gruberi]
          Length = 318

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 25/250 (10%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y +   K + QNFLL+L++  KI    G +   TVIEIG GPG LT+ +L    +++IV+
Sbjct: 2   YGLQASKQLSQNFLLNLHVTDKIVRVCGDISNKTVIEIGPGPGCLTRSILQANPKRLIVV 61

Query: 77  EKDQQFFPILKDI-SSQHPNRLEIIQDDALKVD-----------FEKFFNIS---SPIRI 121
           EKD++F P L+++  S    ++ I+Q D LKVD            EK    S   + +  
Sbjct: 62  EKDERFMPALQNLQQSVDDGKMHIVQGDILKVDQFKLVDHFLEKDEKVLKNSDELANVVF 121

Query: 122 IANLPYNIGTRLLFNWI--SADTWPPFWES----LTLLFQKEVGERITAQKNSPHYGRLS 175
           I NLP+ I T LL NW+   A+    F       + L+FQKEVG R++A+ ++  +GRLS
Sbjct: 122 IGNLPFGIATPLLINWLKDCANGTGAFAFGKKIPMVLMFQKEVGLRMSAKNSTKEFGRLS 181

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP----CCLESLKKITQEAFG 231
           V +        MF ++   F P+PKV ++V+  IP   P+        E L++  +  F 
Sbjct: 182 VSSQSVCDVEHMFVVNAKSFVPAPKVDASVMRLIPKTTPLIDNSLVQFEDLEQFCRIIFN 241

Query: 232 KRRKTLRQSL 241
            +RK L  +L
Sbjct: 242 GKRKQLNTNL 251


>gi|85057928|ref|YP_456844.1| dimethyladenosine transferase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|122064281|sp|Q2NIH8|RSMA_AYWBP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|84790033|gb|ABC65765.1| dimethyladenosine transferase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 268

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 143/262 (54%), Gaps = 19/262 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D+N+L KI  +  S+    V+EIG G G LT++++   A+ V+  E D  
Sbjct: 6   KKKYGQNFLTDVNLLNKIV-TKASITDKNVLEIGPGKGALTKIIVP-QAKNVLAYEIDAT 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
             P L   + ++ N + II DD LK     DF+ +F+ +S + +I NLPY I + +LF  
Sbjct: 64  LKPFL---NFENHNNVNIIYDDFLKRDLLKDFDHYFSPNSQLSLIGNLPYYITSPILFKI 120

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I      P     T++ QKEVG R+ AQ N+ +Y  LSV+  +      + ++  H+FFP
Sbjct: 121 IDT----PQINDATIMIQKEVGMRLLAQPNNKNYNALSVIIQFLFSIEKIQEVKRHMFFP 176

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENLLH--- 251
           +PKV S VI    + N +P  L+   K  + +F ++RKTL  +L     L  E ++    
Sbjct: 177 TPKVDSIVIKLTKNNNILPTFLKQFIKFVKNSFKQKRKTLLNNLSCQFLLSKETIIPFFL 236

Query: 252 QAGIETNLRAENLSIEDFCRIT 273
           Q  I   +RAE +++E F ++T
Sbjct: 237 QHHIPLQIRAEQVTLETFQKLT 258


>gi|307243374|ref|ZP_07525533.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM
           17678]
 gi|306493244|gb|EFM65238.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM
           17678]
          Length = 292

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 139/265 (52%), Gaps = 16/265 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL+D NI+ KI   +G   G  +IE+G G G LT+ + +  A  ++ +E D+  
Sbjct: 24  KSLGQNFLIDDNIVDKIVAGAGIGPGDKIIEVGPGIGTLTREMASR-AEALMAVEIDKNL 82

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWIS 139
            PIL D    + N ++I+ +D +K D     + +    P++++ANLPY I T ++  ++ 
Sbjct: 83  IPILADTLGDYDN-VKIVNEDIIKADIRGLIDENLGGGPVKLVANLPYYITTPIIMRFLE 141

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +        + ++ QKEV ER+ AQ     +G LSV   +     ++  +  H+F P P
Sbjct: 142 ENIN---VTDIVVMVQKEVAERMNAQPGGKDFGALSVAVQYYCDTEIVAKVPRHLFVPQP 198

Query: 200 KVTSTVIHF-IPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG------ENLLH 251
            V S VI   +          E L  K+ + AFG+RRKTL  S+  +G       +  L 
Sbjct: 199 NVDSIVIALRVRPERKYKVDDEDLYFKVVKAAFGQRRKTLLNSISSMGNLAKDQVKEALE 258

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
           +AGI+   R E LS+++F  ++N++
Sbjct: 259 EAGIDPKRRGETLSLDEFAILSNVI 283


>gi|187477205|ref|YP_785229.1| dimethyladenosine transferase [Bordetella avium 197N]
 gi|122064284|sp|Q2KXA2|RSMA_BORA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115421791|emb|CAJ48302.1| dimethyladenosine transferase [Bordetella avium 197N]
          Length = 262

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 129/259 (49%), Gaps = 15/259 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKD 79
           +K  GQ+FL D +++  I  +        ++EIG G   LT  L+   AR  ++ V+E D
Sbjct: 7   RKRFGQHFLTDESVIDAIVRAIAPARDDAIVEIGPGLSALTAPLI---ARLNRLSVVEID 63

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +     L+      P +L +++ DAL VDF +F    + +R++ NLPYNI + LLF+ + 
Sbjct: 64  RDLAARLR--KKYPPEQLSVVEADALTVDFRQF---GAGMRVVGNLPYNISSPLLFHLMG 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A            + Q+EV +R+ A+  S  YGRLSV+   R +   +FD+ P  F P P
Sbjct: 119 AAD---LVRDQHFMLQREVIDRMVAEPRSADYGRLSVMLQSRYRMEKLFDVPPEAFDPPP 175

Query: 200 KVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           +V S V+  +P     P P    + + +   AF +RRK LR+ L            G+  
Sbjct: 176 RVVSAVVRMVPLGPDRPQPASEAAFEAVVARAFSQRRKMLRRGLGDWAAHVPWDDIGVPP 235

Query: 258 NLRAENLSIEDFCRITNIL 276
             RAE + +  F R+T+ L
Sbjct: 236 TARAEEVGVAQFIRLTDAL 254


>gi|146295340|ref|YP_001179111.1| dimethyladenosine transferase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145408916|gb|ABP65920.1| dimethyladenosine transferase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 250

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 143/252 (56%), Gaps = 19/252 (7%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           ++D NI++KI  +   +D   V+EIGAGPG LT   L+  A+KV  +E D++   +LK++
Sbjct: 1   MIDENIVRKIV-NFAKIDQKEVLEIGAGPGTLT-TFLSQKAKKVFAVEIDKKILNVLKEV 58

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIGTRLLFNWISADTWPPFW 147
             Q+ + +EII  D L+++ +   N++S  +  ++ NLPY + +++LF       +    
Sbjct: 59  C-QNLSNVEIINQDFLELNVK---NLTSTQKLCVVGNLPYYVTSQILFKLFEERNY---I 111

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207
           ES T++ QKEV +R+ A+  S  YG L+V   +  K    F +S +VFFP P+V STV+ 
Sbjct: 112 ESFTIMVQKEVAQRLLAKPGSKDYGILTVAMNFYCKVEDFFYVSKNVFFPRPEVDSTVLK 171

Query: 208 FIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKR-LGGE-----NLLHQAGIETNLR 260
            +     IP   E    KI    F  RRKT+  SL   LG E     ++L +  ++ NLR
Sbjct: 172 -VSFKEDIPDVDEKKFFKIVHACFSTRRKTILNSLSNSLGIEKAELKHILEKTSLQENLR 230

Query: 261 AENLSIEDFCRI 272
           AE+LS+E F R+
Sbjct: 231 AEDLSLEHFVRL 242


>gi|58583371|ref|YP_202387.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84625195|ref|YP_452567.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188575373|ref|YP_001912302.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|62900457|sp|Q5GWB9|RSMA_XANOR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365863|sp|Q2NZI4|RSMA_XANOM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732641|sp|B2SPT3|RSMA_XANOP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|58427965|gb|AAW77002.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84369135|dbj|BAE70293.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519825|gb|ACD57770.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 262

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 133/265 (50%), Gaps = 12/265 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKV 73
           S +    KK +GQ+FL D   + +I ++     G  ++EIG G G +T  +L   GA  +
Sbjct: 3   SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGA--L 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D+     L + ++     L II  D L VDF    +  +PIR++ NLPYNI + +
Sbjct: 61  TVIEFDRDLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPI 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +           +  + QKEV +R+ A   S  YGRLSV+       T +F + P 
Sbjct: 119 LFHALDHAA---VVADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCDVTALFVVPPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLL 250
            F P PKV S V+  +P  +P    +   ++   + +  FG+RRKTLR +L  +      
Sbjct: 176 AFRPPPKVDSAVVRLVPR-DPATVHINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHF 234

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             A +  + RAE L + DF R+ N+
Sbjct: 235 EAAQVRPDARAEQLEVADFIRLANV 259


>gi|299782801|gb|ADJ40799.1| Dimethyladenosine transferase [Lactobacillus fermentum CECT 5716]
          Length = 295

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 148/287 (51%), Gaps = 22/287 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y I  KK  GQNFL + ++L  I  ++G      VIEIG G G LT+ L    A
Sbjct: 12  RAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKLAQ-AA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANL 125
            +V+ +E D+   P+L D+ + + N + ++  D LK +        F + + P++++ANL
Sbjct: 71  GEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVKVVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + +LF  +++      W ++ ++ QKEV +R+ A+  +  YG L++   +R    
Sbjct: 130 PYYITSPILFALLASQVE---WAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDYRMDVK 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQSLK 242
           + F++S   F P+P V S ++        +P      + L  + +  F  RRK+L  +LK
Sbjct: 187 VAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFCLIRGCFAHRRKSLWNNLK 246

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            + G++         +L +  I++  R E LS+ DF  + N + + +
Sbjct: 247 TIVGKDEDRLGKVKEVLDRLEIDSQTRPERLSLVDFINLANAMHEKE 293


>gi|27904634|ref|NP_777760.1| dimethyladenosine transferase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|29839464|sp|P59524|RSMA_BUCBP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|27904031|gb|AAO26865.1| dimethyladenosine transferase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 260

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 132/256 (51%), Gaps = 13/256 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL+D  ++ +I           +IEIG G G LT  +  +   K+ VIE D   
Sbjct: 11  KNLGQNFLVDSEVINRIINVINPKSHDFMIEIGPGLGALTYPICKI-LHKLFVIEHDNNL 69

Query: 83  FP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWISA 140
              +LKDIS+     +E+  +D LK +F    N S   +RII NLPYNI   +LF     
Sbjct: 70  GTRLLKDISN-----IEVFVEDVLKFNFLNLINNSFKSVRIIGNLPYNISIPILFYLFKF 124

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  +FQKEV  ++ A   +  Y RLS++  +      +FD+    F+P PK
Sbjct: 125 HNN---IIDMNFMFQKEVASKLLAIPGTKSYSRLSIIAQYYCDIDFLFDVVAQSFYPIPK 181

Query: 201 VTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           VTS+ +  +P    N     +  L  +T  AF +RRK ++ SL  L  ++ L + GI+  
Sbjct: 182 VTSSFVRLVPRKVFNLYVRDINQLSNVTALAFQQRRKIVKNSLSSLFNDDALRKLGIDPL 241

Query: 259 LRAENLSIEDFCRITN 274
           LRAENLS++ +C ++N
Sbjct: 242 LRAENLSVKQYCLLSN 257


>gi|126654253|ref|ZP_01726041.1| dimethyladenosine transferase [Bacillus sp. B14905]
 gi|126589286|gb|EAZ83444.1| dimethyladenosine transferase [Bacillus sp. B14905]
          Length = 294

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 144/284 (50%), Gaps = 26/284 (9%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  Y    KK +GQNFL+D NIL+ I   +   +    IE+G G G LT+ L    A
Sbjct: 13  QEILKKYGFSFKKSLGQNFLIDPNILRNIVSHADLTENSGAIEVGPGIGALTEHL-ARSA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
           +KV+  E DQ+  P+L+D  S + N + I+  D LK D      E+   I   I ++ANL
Sbjct: 72  KKVVSFEIDQRLLPVLEDTLSPY-NNVSIVHSDILKADVAKVIAEEMLGIED-IMVVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T +L   ++ D  P       ++ QKEV +RITA+  +  YG LS+   +  KA 
Sbjct: 130 PYYVTTPILMKLLN-DRLP--IRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVKAE 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLK 242
           +   +   VF P P V S VI  I +  P P  +   + L  +T+ +F +RRKT+  +L+
Sbjct: 187 IAMTVPKTVFMPQPNVDSAVIRLIKYDEP-PVKVINEDFLFVVTRASFVQRRKTIYNNLQ 245

Query: 243 RLGGEN----------LLHQAGIETNLRAENLSIEDFCRITNIL 276
             G  N           L  A IE   R E L+I++F ++ + L
Sbjct: 246 S-GLPNGKAQKDFILEALTAASIEPTRRGETLTIQEFGKLADAL 288


>gi|39996962|ref|NP_952913.1| dimethyladenosine transferase [Geobacter sulfurreducens PCA]
 gi|62900555|sp|Q74C12|RSMA_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|39983850|gb|AAR35240.1| dimethyladenosine transferase [Geobacter sulfurreducens PCA]
          Length = 276

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 139/271 (51%), Gaps = 20/271 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  +K +GQNFL D ++L +IA    +  G  ++EIG G G LT  L    A +++ +E 
Sbjct: 6   IRARKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEQ-AGQLVAVEL 64

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLFN 136
           D +  P+L+   + +P+ + II+ D L +D  +      + P ++ ANLPYNI T +LF 
Sbjct: 65  DDRLVPLLRGSFAGNPS-VTIIEGDILDLDLRETLGRYGTPPWKVAANLPYNISTPVLFR 123

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            + A      +  L L+ QKEVG R+ A   S  YG LSVL       T    + P  F 
Sbjct: 124 LLDARD---LFSRLVLMLQKEVGNRLAAGPGSKEYGVLSVLFQLHFDVTREILVRPGSFH 180

Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG-------- 246
           P PKV S V+ F+P   P +    E   +++ + +F  RRKTL   LK  GG        
Sbjct: 181 PVPKVDSVVLLFVPLAQPRVDVGDEDYFRRVVKASFAMRRKTLWNCLK--GGALGVPTDG 238

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             ++L + GI+   R E LS+++F  +T  L
Sbjct: 239 IRDVLARCGIDEGRRGETLSLQEFASLTKGL 269


>gi|157123560|ref|XP_001660203.1| dimethyladenosine transferase [Aedes aegypti]
 gi|108874371|gb|EAT38596.1| dimethyladenosine transferase [Aedes aegypti]
          Length = 339

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 148/291 (50%), Gaps = 25/291 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ ++  YK+   K + QNFL+D  +  KI  ++G++    V+E+G GPG +T+ ++  
Sbjct: 22  TIRDLVRLYKLRALKQLSQNFLMDERLTNKIVRAAGNIKDNYVLEVGPGPGGITRSIIRK 81

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFF---------NISS 117
              +++V+EKD++F P L+ ++    +  +++I++ D L+   E  F         +  +
Sbjct: 82  FPHQLVVVEKDRRFLPTLELLAEASKDFLQMDIVRGDILEYRTEMAFPDCPKTEWNDKRA 141

Query: 118 PIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           P+ +I NLP+ I TRLL NWI      +  W     SLTL FQKEV ERI A   S +  
Sbjct: 142 PVHLIGNLPFAISTRLLINWIREMSLRSGAWSYGRSSLTLTFQKEVAERIVAPILSEYRC 201

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFG 231
           RLSV+    +KA + F I    F P P V   V+  IP   P+     + ++K+ +  F 
Sbjct: 202 RLSVMNQVWSKAELKFIIPGKAFVPKPDVDVGVVTIIPLKTPLTTVHFDVVEKVIRHIFS 261

Query: 232 KRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITN 274
            R+K  R+ +  L   ++           A ++   R+  LS E+  RI  
Sbjct: 262 MRQKYCRRGVSNLYPPDVREDLTQLTFRMADVDPLARSFQLSTEECLRIAE 312


>gi|83025301|gb|ABB95743.1| mitochondrial transcription factor B1 [Tigriopus californicus]
 gi|83025303|gb|ABB95744.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 24/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L+  
Sbjct: 4   STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118
           GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +        SP    
Sbjct: 64  GARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123

Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173
           IR+++NLP+NI      R + +  + D    +      L FQKEV ERI AQ    +  R
Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 183

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232
           LSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    F  
Sbjct: 184 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243

Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|83583584|gb|ABC24676.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 365

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 24/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L+  
Sbjct: 14  STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 73

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118
           GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +        SP    
Sbjct: 74  GARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 133

Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173
           IR+++NLP+NI      R + +  + D    +      L FQKEV ERI AQ    +  R
Sbjct: 134 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 193

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232
           LSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    F  
Sbjct: 194 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 253

Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 254 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 310


>gi|167038742|ref|YP_001661727.1| dimethyladenosine transferase [Thermoanaerobacter sp. X514]
 gi|300913673|ref|ZP_07130990.1| dimethyladenosine transferase [Thermoanaerobacter sp. X561]
 gi|307723312|ref|YP_003903063.1| dimethyladenosine transferase [Thermoanaerobacter sp. X513]
 gi|166852982|gb|ABY91391.1| dimethyladenosine transferase [Thermoanaerobacter sp. X514]
 gi|300890358|gb|EFK85503.1| dimethyladenosine transferase [Thermoanaerobacter sp. X561]
 gi|307580373|gb|ADN53772.1| dimethyladenosine transferase [Thermoanaerobacter sp. X513]
          Length = 273

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 16/263 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNF+ D NIL KI  +SG      V+EIG G G LT+ L     +KV+  E D++ +  
Sbjct: 13  GQNFIFDKNILAKIVIASGVALEDFVLEIGTGLGTLTEELAK-RVKKVVSFEIDRELYEA 71

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADT 142
            K+  + + N + I+ +D +K D  +  N      P +++ANLPY I + ++   +    
Sbjct: 72  TKEKLNIYNNVI-IMNEDIMKADLNRIANEYFEGKPFKVVANLPYYITSPIIMMLLECK- 129

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
              F + +T+L QKEV ERI A   +  YG L+V   ++ K  ++F++ P VF P PKV 
Sbjct: 130 ---FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKILFNLPPSVFVPPPKVD 186

Query: 203 STVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGIETNL 259
           S+++       P+    +      + + AFG+RRK L  +LK LG  + ++ +A   +NL
Sbjct: 187 SSLVKLEILDKPLVEVKDEALFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSNL 246

Query: 260 ----RAENLSIEDFCRITNILTD 278
               R E LSIE+F  + N++ D
Sbjct: 247 SHQRRGETLSIEEFTALANVIYD 269


>gi|56418570|ref|YP_145888.1| dimethyladenosine transferase [Geobacillus kaustophilus HTA426]
 gi|297528410|ref|YP_003669685.1| dimethyladenosine transferase [Geobacillus sp. C56-T3]
 gi|62900466|sp|Q5L3V8|RSMA_GEOKA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56378412|dbj|BAD74320.1| dimethyladenosine transferase [Geobacillus kaustophilus HTA426]
 gi|297251662|gb|ADI25108.1| dimethyladenosine transferase [Geobacillus sp. C56-T3]
          Length = 293

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 24/284 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL+KI + +        IEIG G G LT+  L   A
Sbjct: 12  KEILERYGFSFKKSLGQNFLIDANILRKIVDVADISPDTGAIEIGPGIGALTEQ-LARRA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
           +KV+  E D +  PIL D  S + N + I   D LK D      E+  ++S  + ++ANL
Sbjct: 71  KKVVAFEIDGRLLPILADTLSPYDN-VRIFHQDVLKADLHAVIAEELADVSDRM-VVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++ +  P     + ++ QKEV +R+ A+  +  YG L++   + T+A 
Sbjct: 129 PYYVTTPIIMKLLT-ERLP--IRGMVVMLQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLK 242
           ++  +   VF P P V S VI  +   +P P  ++      ++ + +F +RRKTL  +L 
Sbjct: 186 VIMTVPRTVFMPQPNVDSAVIRLVKRQHP-PVVVDDEGVFFQVVRASFAQRRKTLFNNLT 244

Query: 243 R--LGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
               GG       E +L   GI+   R E L I +F  ++N L 
Sbjct: 245 NNLPGGKENKEQIERVLVALGIDPRRRGETLDIAEFASLSNALA 288


>gi|237756245|ref|ZP_04584806.1| dimethyladenosine transferase [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691603|gb|EEP60650.1| dimethyladenosine transferase [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 258

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 136/262 (51%), Gaps = 8/262 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +I PKK++GQ+FL+  N+++KI +         ++EIG G G LT+ +L    + +  +E
Sbjct: 3   RIKPKKHLGQHFLISKNVIEKIVDEIDISQEDIIVEIGPGTGALTEEILLRNPKILYAVE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D   +P+L++  S++ N  ++I+ D   V+  +  +    I+++ NLPYN+ + ++   
Sbjct: 63  IDTTVYPVLEEKFSKYSN-FKLIKSDFFDVNLYELISDKEKIKLVGNLPYNVSSLMI--- 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         E    + QKEV E++ A+  +  Y  LSV          +  +    F P
Sbjct: 119 IDCGFKLDILEFCVFMIQKEVAEKLIAKPKTKDYTFLSVFIQTFFDVKYIMSVPARFFNP 178

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            PKVTS V+   P  N +   ++  K      F  RRK ++  ++    E +L++AG+  
Sbjct: 179 PPKVTSAVVKLTPKQNIVINNVKKYKNFVSHLFQNRRKMIKSKIE----EGMLNKAGVSP 234

Query: 258 NLRAENLSIEDFCRITNILTDN 279
           NLRAE LS+EDF RI  ++ ++
Sbjct: 235 NLRAEELSVEDFIRIFEVVEND 256


>gi|294496912|ref|YP_003560612.1| dimethyladenosine transferase [Bacillus megaterium QM B1551]
 gi|294346849|gb|ADE67178.1| dimethyladenosine transferase [Bacillus megaterium QM B1551]
          Length = 292

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 144/282 (51%), Gaps = 22/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL +I + +   +    IEIG G G LT+ L    A
Sbjct: 12  KEILKKYGFTFKKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLAK-RA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANL 125
           +KV+  E DQ+  PIL D  S + N  ++I  D LK D      ++F NI   + ++ANL
Sbjct: 71  KKVLAFEIDQRLLPILADTLSPYSN-AKVIHQDVLKADLKGTLEQEFENIED-LMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T +L   +  +  P     + ++ QKEV +RI A+  +  YG LS+   + T+A 
Sbjct: 129 PYYVTTPILMKLLE-EQIP--VRGIVVMLQKEVADRIAAKPGTKEYGSLSIAIQYYTEAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241
            +  +   VF P P V S VI  +    P     +     ++ + +FG+RRKT+  +L  
Sbjct: 186 TVMIVPKTVFNPQPNVDSAVIRLLRRPKPAVEVQDEAFFFQVVRASFGQRRKTILNNLVN 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                  K+   E  L  A I+   R E LSI++F ++++ L
Sbjct: 246 NLPNGKQKKADIEQALSTAEIDPKRRGETLSIQEFGKLSDQL 287


>gi|238782671|ref|ZP_04626701.1| Dimethyladenosine transferase [Yersinia bercovieri ATCC 43970]
 gi|238716331|gb|EEQ08313.1| Dimethyladenosine transferase [Yersinia bercovieri ATCC 43970]
          Length = 214

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 120/212 (56%), Gaps = 13/212 (6%)

Query: 72  KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-PIRIIANLPY 127
           ++ VIE D+     L    + HP   ++L I Q DA+KV+F +   ++  P+R+  NLPY
Sbjct: 3   RMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAMKVNFAELAELAGQPLRVFGNLPY 58

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V+  +      +
Sbjct: 59  NISTPLMFHLFS---YTNAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPV 115

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLG 245
            ++ P  F P+PKV S V+  IPH+N P P   +  L +IT +AF +RRKT+R SL  L 
Sbjct: 116 LEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITTQAFNQRRKTVRNSLGDLF 175

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
               L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 176 TAEQLIELGIDPILRAENISVAQYCKLANWLS 207


>gi|328950176|ref|YP_004367511.1| Ribosomal RNA small subunit methyltransferase A [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450500|gb|AEB11401.1| Ribosomal RNA small subunit methyltransferase A [Marinithermus
           hydrothermalis DSM 14884]
          Length = 277

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 143/278 (51%), Gaps = 26/278 (9%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            +++ +L  Y +   K  GQNFL+D N+L  I  ++    G  V E+G G G LT+ L  
Sbjct: 12  RTVRALLERYGLRADKRFGQNFLVDGNLLGVIVRTAQVRPGERVYEVGPGLGTLTRALAE 71

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GA KV  IEKDQ+  P+L++  +     + ++  DAL   +++    S     +ANLPY
Sbjct: 72  AGA-KVTAIEKDQRLLPVLEETLAGL--NVTVVPGDALAYPWDEVPPDSL---FVANLPY 125

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI T LL   + A+ +      L +L QKEV +R+ A+  +  YG L++   +  +   +
Sbjct: 126 NISTPLLTAVLRANRF----RRLVVLVQKEVADRLAARPATEAYGLLTLRAQYHARVERV 181

Query: 188 FDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            D  P  F+P P VTST++      +P  +P      +L ++ + AF +RRKTLR++L+ 
Sbjct: 182 RDFPPQAFYPQPNVTSTLVRLESKGVPD-DP------ALFRLVEAAFAQRRKTLRKNLEA 234

Query: 244 LGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276
            G         L   G++  +R E L +E F R+   L
Sbjct: 235 AGYARERVLAALSALGLDPRVRGEALDLEAFQRLKAAL 272


>gi|227873154|ref|ZP_03991445.1| dimethyladenosine transferase [Oribacterium sinus F0268]
 gi|227840985|gb|EEJ51324.1| dimethyladenosine transferase [Oribacterium sinus F0268]
          Length = 312

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 141/264 (53%), Gaps = 16/264 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+D ++L  I   +       VIEIG G G LT+ L    A +VI IE D +
Sbjct: 35  KKQFGQNFLIDASVLDHIISYAKIQKEDLVIEIGPGIGTLTEALCE-HAGQVIAIEIDDK 93

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138
             PIL++  +   N   ++  D LKVDF +        S ++++ANLPY I T +L + +
Sbjct: 94  LIPILEENLAAKEN-FRLLHQDVLKVDFTELLKEYPGFSSVKVVANLPYYITTPILLSLL 152

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                P    S+T++ QKEV ER+ A   +  YG LS+   + +K  ++ ++ PH F P 
Sbjct: 153 E-KKLP--LSSITVMVQKEVAERMQAGPGTKDYGALSLAVQYYSKPEIVQEVPPHCFIPR 209

Query: 199 PKVTSTVIHF-IPHLNPIPC-CLESLKKITQEAFGKRRKTLRQ------SLKRLGGENLL 250
           PKV+S VIH  I   +P+ C   E L K  + +F +RRKTL        SL +   +++L
Sbjct: 210 PKVSSMVIHLSIYKESPVECENPEYLFKTIKASFMQRRKTLVNALSAGLSLDKEVIKSVL 269

Query: 251 HQAGIETNLRAENLSIEDFCRITN 274
                  N+R E LS+++F  I++
Sbjct: 270 SALSYPENVRGETLSLDEFAEISD 293


>gi|308051068|ref|YP_003914634.1| dimethyladenosine transferase [Ferrimonas balearica DSM 9799]
 gi|307633258|gb|ADN77560.1| dimethyladenosine transferase [Ferrimonas balearica DSM 9799]
          Length = 269

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 138/260 (53%), Gaps = 9/260 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D++++ +I  +    +   ++EIG G G LT+ +       + V+E D+ 
Sbjct: 12  RKRFGQNFLHDMSVIDRIVAAIRPDNDHIMVEIGPGLGALTEPVAD-QVEHLNVVELDRD 70

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-SA 140
               L+    +   +L I + DALK DF +       +++  NLPYNI T L+F+   + 
Sbjct: 71  LAERLRH-QPRWGQKLTIHEGDALKFDFNQLAEPGKRMKVFGNLPYNISTPLMFHLFETV 129

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D+     ES+  + QKEV ER+ A     +YGRLSV+  +  +   + ++ P  F P PK
Sbjct: 130 DSV----ESMHFMLQKEVVERLCAGPGHKNYGRLSVMAQYYCQCIPVLEVPPGCFTPPPK 185

Query: 201 VTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +PH+  P P   + +L+K+   AF  RRKTLR + K    ++     GI+  
Sbjct: 186 VDSAVVRLVPHVEKPYPATNVATLEKVVATAFTMRRKTLRNNFKGQLNDDDFAALGIDPT 245

Query: 259 LRAENLSIEDFCRITNILTD 278
           LR E +S+ ++  + N +++
Sbjct: 246 LRPERISLPEYVAMANYISE 265


>gi|213029736|ref|ZP_03344183.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 212

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 115/211 (54%), Gaps = 13/211 (6%)

Query: 75  VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIG 130
           VIE D+     L+     HP    +L I Q DA+ ++F E    +  P+R+  NLPYNI 
Sbjct: 3   VIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRVFGNLPYNIS 58

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  +  +   + ++
Sbjct: 59  TPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEV 115

Query: 191 SPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    
Sbjct: 116 PPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSVE 175

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            L + GI+  +RAEN+S+  +C++ N L++N
Sbjct: 176 TLTEMGIDPAMRAENISVAQYCQMANYLSEN 206


>gi|323697933|ref|ZP_08109845.1| dimethyladenosine transferase [Desulfovibrio sp. ND132]
 gi|323457865|gb|EGB13730.1| dimethyladenosine transferase [Desulfovibrio desulfuricans ND132]
          Length = 260

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 135/257 (52%), Gaps = 23/257 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL D NI +KI ++     G ++IEIG G G LT+ L+  GAR + V+E D  
Sbjct: 11  KKSLGQNFLTDRNICRKIVDALAPTPGASIIEIGPGQGALTEHLVETGAR-LRVVEMDDD 69

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               L D   +    LE+I+ DALK  + +  N   P+RII NLPYN+G++L+++ +S  
Sbjct: 70  ----LADRLEERWPDLEVIRADALKFPWAE-LNAEGPVRIIGNLPYNVGSKLIWDIVSRV 124

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           +T     E    + Q EV  R+TA+  S  YG L+      +    +F + P VF P PK
Sbjct: 125 ET----LERAVFMVQHEVALRLTAEPGSKAYGGLTAWVRNFSDTRYLFKVPPTVFRPRPK 180

Query: 201 VTSTVIHFIPHLNPIPCCL-----ESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQ 252
           V S V+ F    +P+P        + L ++ +  F +RRK +   LK+      E    +
Sbjct: 181 VDSAVVRF----DPLPAGARPEDPDRLAELIKLLFQQRRKQISTILKKRMTPAVEQWFRE 236

Query: 253 AGIETNLRAENLSIEDF 269
            G+  +LR ENL+   F
Sbjct: 237 EGVSPSLRPENLTPTQF 253


>gi|30018312|ref|NP_829943.1| dimethyladenosine transferase [Bacillus cereus ATCC 14579]
 gi|75759603|ref|ZP_00739689.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218232555|ref|YP_002364891.1| dimethyladenosine transferase [Bacillus cereus B4264]
 gi|218895177|ref|YP_002443588.1| dimethyladenosine transferase [Bacillus cereus G9842]
 gi|296500873|ref|YP_003662573.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171]
 gi|33516920|sp|Q81JA5|RSMA_BACCR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729753|sp|B7ISV1|RSMA_BACC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729754|sp|B7HIK9|RSMA_BACC4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|29893852|gb|AAP07144.1| Dimethyladenosine transferase [Bacillus cereus ATCC 14579]
 gi|74492894|gb|EAO56024.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218160512|gb|ACK60504.1| dimethyladenosine transferase [Bacillus cereus B4264]
 gi|218541640|gb|ACK94034.1| dimethyladenosine transferase [Bacillus cereus G9842]
 gi|296321925|gb|ADH04853.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171]
 gi|326937833|gb|AEA13729.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 292

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 24/283 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL 68
           K I+  Y    KK +GQNFL+D N+L +I + +  GS  G   IEIG G G LT+ L   
Sbjct: 11  KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESG--AIEIGPGIGALTEQLAK- 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIAN 124
            A+KV+  E DQ+  PIL +  + + N + +I  D LK D  + FN        + ++AN
Sbjct: 68  RAKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+ 
Sbjct: 127 LPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242
             +  +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L 
Sbjct: 184 ETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLS 243

Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                        + +L + GI+   R E LSIE+F  ++N L
Sbjct: 244 NNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 286


>gi|307265678|ref|ZP_07547231.1| dimethyladenosine transferase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919322|gb|EFN49543.1| dimethyladenosine transferase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 273

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 142/263 (53%), Gaps = 16/263 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNF+ D NIL KI  +SG      V+EIG G G LT+ L  +  +KVI  E D++ +  
Sbjct: 13  GQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEELAKM-VKKVISFEIDRELYEA 71

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADT 142
            K+      N + II +D +KVD  K  N      P +++ANLPY I + ++   +    
Sbjct: 72  TKE-KLNIYNNVIIINEDIMKVDLNKIANEYFEGKPFKVVANLPYYITSPIIMMLLECK- 129

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
              F + +T+L QKEV ERI A   +  YG L+V   ++ K   +F++ P VF P PKV 
Sbjct: 130 ---FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKKLFNLPPSVFVPPPKVD 186

Query: 203 STVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGIETNL 259
           S+++   I   + +    E L   + + AFG+RRK L  +LK LG  + ++ +A   +NL
Sbjct: 187 SSLVKLEILDKSLVEVKDERLFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSNL 246

Query: 260 ----RAENLSIEDFCRITNILTD 278
               R E LSIE+F  + N++ D
Sbjct: 247 SPQRRGETLSIEEFAALANVIYD 269


>gi|269797689|ref|YP_003311589.1| dimethyladenosine transferase [Veillonella parvula DSM 2008]
 gi|269094318|gb|ACZ24309.1| dimethyladenosine transferase [Veillonella parvula DSM 2008]
          Length = 284

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ KI  ++    G  V+E+G G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDKIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGA-D 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   +L D +    N + II  D LK+D     N   P +++ANLPY I T 
Sbjct: 74  VTAIELDRRLLEVL-DTTLASYNNVRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + + +    P  E L ++ QKEV  R+ A+  +  YG LSV   + T+  ++ D+ P
Sbjct: 132 IIMSLLESKL--PI-ERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246
             F P+P VTS+VI  +     P+    E L  ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274
            E LL +A I+   R E  ++++F  + N
Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277


>gi|312372402|gb|EFR20370.1| hypothetical protein AND_20209 [Anopheles darlingi]
          Length = 353

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 148/292 (50%), Gaps = 26/292 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ ++  Y++   K + QNFL+D  +  KI  ++G +    V+E+G GPG +T+ ++  
Sbjct: 23  TIRDLVKLYQLRAIKQLSQNFLMDERLTDKIVRAAGKIRDHHVLEVGPGPGGITRSIIRQ 82

Query: 69  GARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFF----------NIS 116
             R ++V+EKD++F P ++ ++  SQ   R++I++ D L    E  F           + 
Sbjct: 83  HPRHLVVVEKDRRFMPTMEMLAEVSQPFMRMDIVRGDILDYRIEGAFPDCEPHDWMDPVP 142

Query: 117 SPIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           +P+ +I NLP+ I TRLL NW     +    W     SLTL FQKEV ERI A   S   
Sbjct: 143 APVHLIGNLPFAISTRLLINWLRDMSLRTGAWHYGRASLTLTFQKEVAERIVAPILSDQR 202

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAF 230
            RLSV+    +K  + F IS   F P P+V   V+  +P   P+     ++++K+ +  F
Sbjct: 203 CRLSVMNQIWSKPDLRFMISGRAFVPKPEVDVGVVTIVPLQTPLTQVHFDTVEKVIRHIF 262

Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITN 274
             R+K  R+ +  L          E    ++ ++   R+  LS+++  RI  
Sbjct: 263 SMRQKYCRRGVSNLYPPTVRDELTELTFRKSSVDPLSRSFQLSVDECLRIVE 314


>gi|171060583|ref|YP_001792932.1| dimethyladenosine transferase [Leptothrix cholodnii SP-6]
 gi|226732592|sp|B1Y7L9|RSMA_LEPCP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|170778028|gb|ACB36167.1| dimethyladenosine transferase [Leptothrix cholodnii SP-6]
          Length = 269

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 15/259 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQ+FL D ++L +I +      G  ++EIG G G +T  ++    +++ V+E
Sbjct: 2   KHIPRKRFGQHFLADQSVLDRIVQLIDPQPGEALVEIGPGLGAMTDPVVE-RCKRLTVVE 60

Query: 78  KDQQFFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
            D       +D++++   R  L +I+ D LKVDF      +  P+R+I NLPYNI + +L
Sbjct: 61  LD-------RDLAARLRKRPELTVIESDVLKVDFTALAQAAGRPVRVIGNLPYNISSPIL 113

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +         +    + QKEV +R+ +   S  YGRLSV+  WR +   + D+ P  
Sbjct: 114 FHLLEQVAS---VQDQHFMLQKEVVDRMASAPGSKDYGRLSVMLQWRYQIESLLDVPPES 170

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P+V S ++  +P   P     + L ++   AF +RRK LR +L R   E   H   
Sbjct: 171 FDPPPRVDSAIVRMLPLAQPPAVDPKLLGELVTVAFSQRRKMLRNTLGRW-LEAREHGGA 229

Query: 255 IETNLRAENLSIEDFCRIT 273
            +   RAE + + +F  +T
Sbjct: 230 FDLTRRAEEVPVAEFVALT 248


>gi|163938049|ref|YP_001642933.1| dimethyladenosine transferase [Bacillus weihenstephanensis KBAB4]
 gi|226729756|sp|A9VN54|RSMA_BACWK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|163860246|gb|ABY41305.1| dimethyladenosine transferase [Bacillus weihenstephanensis KBAB4]
          Length = 292

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 24/283 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL 68
           K I+  Y    KK +GQNFL+D N+L +I + +  GS  G   IEIG G G LT+ L   
Sbjct: 11  KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESG--AIEIGPGIGALTEQLAK- 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIAN 124
            A+KV+  E DQ+  PIL +  + + N + +I  D LK D    F + F     + ++AN
Sbjct: 68  RAKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+ 
Sbjct: 127 LPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242
             +  +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L 
Sbjct: 184 ETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLS 243

Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                        + +L + GI+   R E LSIE+F  ++N L
Sbjct: 244 NNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 286


>gi|118475813|ref|YP_892964.1| dimethyladenosine transferase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196047365|ref|ZP_03114578.1| dimethyladenosine transferase [Bacillus cereus 03BB108]
 gi|225862093|ref|YP_002747471.1| dimethyladenosine transferase [Bacillus cereus 03BB102]
 gi|166221644|sp|A0R8B4|RSMA_BACAH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807859|sp|C1ESX0|RSMA_BACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118415038|gb|ABK83457.1| dimethyladenosine transferase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021767|gb|EDX60461.1| dimethyladenosine transferase [Bacillus cereus 03BB108]
 gi|225788520|gb|ACO28737.1| dimethyladenosine transferase [Bacillus cereus 03BB102]
          Length = 292

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 24/284 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL 68
           K I+  Y    KK +GQNFL+D N+L +I + +  GS  G   IEIG G G LT+ L   
Sbjct: 11  KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESG--AIEIGPGIGALTEQLAK- 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIAN 124
            A+KV+  E DQ+  PIL +  + + N + +I  D LK D    F + F     + ++AN
Sbjct: 68  RAKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+ 
Sbjct: 127 LPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL--KKITQEAFGKRRKTLRQSLK 242
             +  +   VF P P V S +I  +    P+    + +   ++ + +F +RRKTL  +L 
Sbjct: 184 ETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDEIFFFEVVRASFAQRRKTLMNNLS 243

Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                        + +L + GI+   R E LSIE+F  ++N L 
Sbjct: 244 NNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287


>gi|74318358|ref|YP_316098.1| dimethyladenosine transferase [Thiobacillus denitrificans ATCC
           25259]
 gi|119365860|sp|Q3SGF7|RSMA_THIDA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|74057853|gb|AAZ98293.1| ribosomal RNA 16S rRNA dimethylase [Thiobacillus denitrificans ATCC
           25259]
          Length = 255

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 132/259 (50%), Gaps = 11/259 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQNFL+D  I+  I  +     G TV+EIG G G LT+ LL      +  +E D+
Sbjct: 4   PRKRFGQNFLIDDGIVHAIVNAIHPQAGETVVEIGPGLGALTRPLLE-RLPHLHAVELDR 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   +  P RL +   DALK DF    ++   +RI+ NLPYNI T LLF+ +  
Sbjct: 63  DIIARLR--RAWPPERLTLHAGDALKFDFG---SLGDDLRIVGNLPYNISTPLLFHLLE- 116

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             + P    +  + QKEV ER+ A   +  YGRLS++   R     + D+ P  F P PK
Sbjct: 117 --FAPRIRDMHFMLQKEVVERMVASPATADYGRLSIMLQRRFHMEWLLDVPPTAFDPPPK 174

Query: 201 VTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  IP     +P   E+L  ++   AF +RRKTLR +L  L         GI+  
Sbjct: 175 VESAVVRLIPKSTAEVPSVDEALFARVVAAAFAQRRKTLRNTLSALMRPEDFVALGIDPG 234

Query: 259 LRAENLSIEDFCRITNILT 277
           LRAE L + D+  IT  L 
Sbjct: 235 LRAEALHVADYEAITAYLA 253


>gi|308505052|ref|XP_003114709.1| hypothetical protein CRE_28029 [Caenorhabditis remanei]
 gi|308258891|gb|EFP02844.1| hypothetical protein CRE_28029 [Caenorhabditis remanei]
          Length = 363

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 148/294 (50%), Gaps = 28/294 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +L+  +  Y++  KK + QN+L+D+NI +KIA+ +   +   VIEIG GPG +T+ +L  
Sbjct: 10  ALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVHENDWVIEIGPGPGGITRAILEA 69

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----------- 117
           GA ++ V+E D +F P L+ ++    +R+ I   DAL+ +    +   +           
Sbjct: 70  GASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKAETQRPKSVDWNDS 129

Query: 118 ---PIRIIANLPYNIGTRLLFNWISADTWP-PFWE----SLTLLFQKEVGERITAQKNSP 169
              P+ +I NLP+NI + L+  ++   ++    W+     LTL FQ EV +R+ +     
Sbjct: 130 SLPPMHVIGNLPFNIASPLIIKYLRDMSYQRGVWQYGRVPLTLTFQLEVAKRLCSPIACD 189

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228
              R+S++  + T+  M+F IS   F P P+V   V+ F+P   P +    E L+K+ ++
Sbjct: 190 TRSRISIMAQYVTEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKLCRQ 249

Query: 229 AFGKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITN 274
            F  R+K + + LK L          + LL +  ++    +  L +E F  +  
Sbjct: 250 VFHYRQKYVEKGLKTLYPPEMEDEMADELLKKCRVDPTTTSIRLGMEQFADLAE 303


>gi|196228205|ref|ZP_03127072.1| dimethyladenosine transferase [Chthoniobacter flavus Ellin428]
 gi|196227608|gb|EDY22111.1| dimethyladenosine transferase [Chthoniobacter flavus Ellin428]
          Length = 460

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 143/280 (51%), Gaps = 13/280 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K  +++  L+   + P K +GQNFL D N+ + I            +E+G G G LT+  
Sbjct: 2   KLSTIQASLNQLGMQPTKSLGQNFLHDQNLAEWIVAQLDIQPEEAWVELGPGLGALTEFA 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L    R  +VIEKD +    L++   + P  LEII  DA + D  + F    PI+++ NL
Sbjct: 62  LARSPRG-LVIEKDGRLAGFLRE---RFPA-LEIIHGDASEFDVRELF-ARGPIKVLGNL 115

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + +++LF +      P    +L    QKE+ ER++A   +  YG L++L G R K  
Sbjct: 116 PYYVSSQILFAFTGE---PSPVSALIFTLQKELAERLSAGPWTKEYGALTLLVGRRWKVK 172

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSL-- 241
            +  +   VF P+PKV S ++   P     +P C  E   ++ ++ F +RRK LR++L  
Sbjct: 173 YLRTLPGSVFMPAPKVDSAIVLLTPRPAGEVPACDGELFTRLVKQGFAQRRKQLRKNLAG 232

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           + L    L    G+E   RAE LS+E +  +TN +T + D
Sbjct: 233 RNLDWPALCQHLGVEETTRAEELSLEQWIALTNFVTKSSD 272


>gi|221633286|ref|YP_002522511.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159]
 gi|221155685|gb|ACM04812.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159]
          Length = 297

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 146/281 (51%), Gaps = 18/281 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L    I P+K +GQ+FL D  I+++I E++       V+EIG G G LT+  L   
Sbjct: 27  VRQVLRELGIRPRKALGQHFLHDRAIVRRIVETAQLPPDALVVEIGPGLGILTEE-LARW 85

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR VI +E D +    L +    H   + I+  DAL+VD         P  ++ANLPYN+
Sbjct: 86  ARSVIAVELDARLAEQLAE--RFHGTNVRIVHGDALEVDLAALTG-QCPYFVVANLPYNV 142

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +L   +++D  P   E L ++ Q+EV ER+ A+  +  Y  L VL  +     + F 
Sbjct: 143 ATPILERLLTSDHPP---ERLVVMVQREVAERMAARPPAMSY--LGVLVQFFALPRVAFR 197

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           I P  F P PKV S V+       P+P    +S   + +  F +RRK L  +L    G +
Sbjct: 198 IGPGAFTPPPKVESAVVVLDRRTPPLPKHHWDSFFALVRAGFAQRRKMLLNALATATGMD 257

Query: 249 ------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                 LL +AGIE + RAE L++E++ R+  +L  ++D+A
Sbjct: 258 KEMLRALLQRAGIEPSRRAETLTVEEWLRLWRVL--HEDVA 296


>gi|30260231|ref|NP_842608.1| dimethyladenosine transferase [Bacillus anthracis str. Ames]
 gi|42779120|ref|NP_976367.1| dimethyladenosine transferase [Bacillus cereus ATCC 10987]
 gi|47525294|ref|YP_016643.1| dimethyladenosine transferase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569890|ref|ZP_00240557.1| dimethyladenosine transferase [Bacillus cereus G9241]
 gi|49183075|ref|YP_026327.1| dimethyladenosine transferase [Bacillus anthracis str. Sterne]
 gi|49477600|ref|YP_034395.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52145175|ref|YP_081654.1| dimethyladenosine transferase [Bacillus cereus E33L]
 gi|65317501|ref|ZP_00390460.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Bacillus
           anthracis str. A2012]
 gi|165872549|ref|ZP_02217181.1| dimethyladenosine transferase [Bacillus anthracis str. A0488]
 gi|167635072|ref|ZP_02393389.1| dimethyladenosine transferase [Bacillus anthracis str. A0442]
 gi|167641541|ref|ZP_02399789.1| dimethyladenosine transferase [Bacillus anthracis str. A0193]
 gi|170688890|ref|ZP_02880092.1| dimethyladenosine transferase [Bacillus anthracis str. A0465]
 gi|170707547|ref|ZP_02898000.1| dimethyladenosine transferase [Bacillus anthracis str. A0389]
 gi|177655321|ref|ZP_02936850.1| dimethyladenosine transferase [Bacillus anthracis str. A0174]
 gi|190568974|ref|ZP_03021875.1| dimethyladenosine transferase [Bacillus anthracis Tsiankovskii-I]
 gi|196036349|ref|ZP_03103746.1| dimethyladenosine transferase [Bacillus cereus W]
 gi|196041767|ref|ZP_03109057.1| dimethyladenosine transferase [Bacillus cereus NVH0597-99]
 gi|206977937|ref|ZP_03238824.1| dimethyladenosine transferase [Bacillus cereus H3081.97]
 gi|217957617|ref|YP_002336159.1| dimethyladenosine transferase [Bacillus cereus AH187]
 gi|218901242|ref|YP_002449076.1| dimethyladenosine transferase [Bacillus cereus AH820]
 gi|222093811|ref|YP_002527860.1| dimethyladenosine transferase [Bacillus cereus Q1]
 gi|227812714|ref|YP_002812723.1| dimethyladenosine transferase [Bacillus anthracis str. CDC 684]
 gi|229601390|ref|YP_002864692.1| dimethyladenosine transferase [Bacillus anthracis str. A0248]
 gi|254682332|ref|ZP_05146193.1| dimethyladenosine transferase [Bacillus anthracis str. CNEVA-9066]
 gi|254724182|ref|ZP_05185967.1| dimethyladenosine transferase [Bacillus anthracis str. A1055]
 gi|254733577|ref|ZP_05191298.1| dimethyladenosine transferase [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744655|ref|ZP_05202334.1| dimethyladenosine transferase [Bacillus anthracis str. Kruger B]
 gi|254756360|ref|ZP_05208389.1| dimethyladenosine transferase [Bacillus anthracis str. Vollum]
 gi|254762416|ref|ZP_05214258.1| dimethyladenosine transferase [Bacillus anthracis str. Australia
           94]
 gi|300119136|ref|ZP_07056837.1| dimethyladenosine transferase [Bacillus cereus SJ1]
 gi|301051777|ref|YP_003789988.1| dimethyladenosine transferase [Bacillus anthracis CI]
 gi|33516921|sp|Q81W00|RSMA_BACAN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900500|sp|Q63HJ1|RSMA_BACCZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900530|sp|Q6HPX5|RSMA_BACHK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900550|sp|Q73FG7|RSMA_BACC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729752|sp|B7JK47|RSMA_BACC0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729755|sp|B7HPV2|RSMA_BACC7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807857|sp|C3P9I6|RSMA_BACAA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807858|sp|C3LJ13|RSMA_BACAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807860|sp|B9IZC4|RSMA_BACCQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|30253552|gb|AAP24094.1| dimethyladenosine transferase [Bacillus anthracis str. Ames]
 gi|42735035|gb|AAS38975.1| dimethyladenosine transferase [Bacillus cereus ATCC 10987]
 gi|47500442|gb|AAT29118.1| dimethyladenosine transferase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47553424|gb|EAL11808.1| dimethyladenosine transferase [Bacillus cereus G9241]
 gi|49177002|gb|AAT52378.1| dimethyladenosine transferase [Bacillus anthracis str. Sterne]
 gi|49329156|gb|AAT59802.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51978644|gb|AAU20194.1| dimethyladenosine transferase [Bacillus cereus E33L]
 gi|164711677|gb|EDR17222.1| dimethyladenosine transferase [Bacillus anthracis str. A0488]
 gi|167510526|gb|EDR85924.1| dimethyladenosine transferase [Bacillus anthracis str. A0193]
 gi|167529546|gb|EDR92296.1| dimethyladenosine transferase [Bacillus anthracis str. A0442]
 gi|170127543|gb|EDS96417.1| dimethyladenosine transferase [Bacillus anthracis str. A0389]
 gi|170667114|gb|EDT17875.1| dimethyladenosine transferase [Bacillus anthracis str. A0465]
 gi|172080162|gb|EDT65255.1| dimethyladenosine transferase [Bacillus anthracis str. A0174]
 gi|190559898|gb|EDV13882.1| dimethyladenosine transferase [Bacillus anthracis Tsiankovskii-I]
 gi|195990979|gb|EDX54950.1| dimethyladenosine transferase [Bacillus cereus W]
 gi|196027387|gb|EDX66004.1| dimethyladenosine transferase [Bacillus cereus NVH0597-99]
 gi|206743843|gb|EDZ55263.1| dimethyladenosine transferase [Bacillus cereus H3081.97]
 gi|217065788|gb|ACJ80038.1| dimethyladenosine transferase [Bacillus cereus AH187]
 gi|218538262|gb|ACK90660.1| dimethyladenosine transferase [Bacillus cereus AH820]
 gi|221237858|gb|ACM10568.1| dimethyladenosine transferase [Bacillus cereus Q1]
 gi|227006542|gb|ACP16285.1| dimethyladenosine transferase [Bacillus anthracis str. CDC 684]
 gi|229265798|gb|ACQ47435.1| dimethyladenosine transferase [Bacillus anthracis str. A0248]
 gi|298723458|gb|EFI64199.1| dimethyladenosine transferase [Bacillus cereus SJ1]
 gi|300373946|gb|ADK02850.1| dimethyladenosine transferase [Bacillus cereus biovar anthracis
           str. CI]
 gi|324324031|gb|ADY19291.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 292

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 24/283 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL 68
           K I+  Y    KK +GQNFL+D N+L +I + +  GS  G   IEIG G G LT+ L   
Sbjct: 11  KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESG--AIEIGPGIGALTEQLAK- 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIAN 124
            A+KV+  E DQ+  PIL +  + + N + +I  D LK D    F + F     + ++AN
Sbjct: 68  RAKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+ 
Sbjct: 127 LPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242
             +  +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L 
Sbjct: 184 ETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLS 243

Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                        + +L + GI+   R E LSIE+F  ++N L
Sbjct: 244 NNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 286


>gi|226309677|ref|YP_002769571.1| dimethyladenosine transferase [Brevibacillus brevis NBRC 100599]
 gi|226092625|dbj|BAH41067.1| dimethyladenosine transferase [Brevibacillus brevis NBRC 100599]
          Length = 297

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/279 (33%), Positives = 138/279 (49%), Gaps = 21/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D NIL  I   +        IEIG G G LT+  L   A
Sbjct: 16  KEILEKYGFAFKKSLGQNFLIDTNILHNIVSEADLTKEKGAIEIGPGIGALTEQ-LGRAA 74

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126
           +KV+ IE DQ+  PIL+D  S + N +E++  D L +D +K           + ++ANLP
Sbjct: 75  KKVMAIEIDQRLLPILQDTLSPYEN-IEVVHGDVLGLDLKKLIEEKMTGVEKLSVVANLP 133

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   +  +  P   E++ ++ QKEV ERI A+  +  YG LSV   +     +
Sbjct: 134 YYVTTPILMKLLE-ERLP--LENIVVMIQKEVAERIAAKPGTKDYGSLSVAAQFYADTEV 190

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL-- 241
              +   VF P P V S VI       P P  ++      ++ + +F +RRKTL  +L  
Sbjct: 191 AMIVPASVFIPRPNVDSAVIRLKVRDRP-PVEVDDQDVFFRVVRCSFAQRRKTLLNNLMN 249

Query: 242 ----KRLGGE--NLLHQAGIETNLRAENLSIEDFCRITN 274
               K    E   +L   GI+   R E LS+++F R+ N
Sbjct: 250 GLFPKTQKDEVIQMLTDIGIDPTRRGETLSLDEFARLAN 288


>gi|118792585|ref|XP_320403.3| AGAP012129-PA [Anopheles gambiae str. PEST]
 gi|116116968|gb|EAA00207.3| AGAP012129-PA [Anopheles gambiae str. PEST]
          Length = 424

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 146/292 (50%), Gaps = 26/292 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ ++  Y++   K + QNFL+D  +  KI  ++G++    V+E+G GPG +T+ ++  
Sbjct: 107 TIRDLVKLYQLRAIKQLSQNFLMDERLTDKIVRAAGNIRDHYVLEVGPGPGGITRSIIRQ 166

Query: 69  GARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFF----------NIS 116
             R ++V+EKD++F P ++ ++  +Q   R++I+Q D L     + F             
Sbjct: 167 NPRHLVVVEKDRRFMPTMEMLAEVAQPFMRMDIVQGDILDYRVAEAFPDCPPHDWMDRKR 226

Query: 117 SPIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           +P+ +I NLP+ I TRLL NW     +    W     SLTL FQKEV ERI A   S   
Sbjct: 227 APVHLIGNLPFAISTRLLINWLRDMSLRTGAWSYGRASLTLTFQKEVAERIVAPILSDQR 286

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAF 230
            RLSV+    +   + F IS   F P P+V   V+  +P   P+     ++++K+ +  F
Sbjct: 287 CRLSVMNQIWSTPELRFMISGRAFVPKPEVDVGVVTIVPLQTPLTQVHFDTVEKVVRHIF 346

Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITN 274
             R+K  R+ +  L          E    +A ++   R+  LS+ +  RI  
Sbjct: 347 SMRQKYCRRGVANLYPPAVREELTEQTFKRADVDPLARSFQLSVAECLRIVE 398


>gi|114331217|ref|YP_747439.1| dimethyladenosine transferase [Nitrosomonas eutropha C91]
 gi|122313917|sp|Q0AGQ8|RSMA_NITEC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|114308231|gb|ABI59474.1| dimethyladenosine transferase [Nitrosomonas eutropha C91]
          Length = 256

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 137/257 (53%), Gaps = 14/257 (5%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK 78
           IP++  GQ+FL+D +I+ +I      L G  +IEIG G G LTQ LL  L   + I +++
Sbjct: 4   IPRRRFGQHFLVDHHIIAEIIHIICPLPGDRMIEIGPGLGALTQPLLNNLDTLQAIELDR 63

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     I+  +S  +  +L I   DALK DF     +   +RI+ NLPYNI T LLF+  
Sbjct: 64  D-----IVDYLSRNYAEKLVIHNVDALKFDFSA---LGEGLRIVGNLPYNISTPLLFHL- 114

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +      +  + Q EV ER+ AQ ++P YGRLS++   R +   M  +    F P 
Sbjct: 115 --SRFSNLIIDMHFMLQLEVVERMVAQPSTPDYGRLSLMLQNRFEMEQMLIVPAEAFNPP 172

Query: 199 PKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P+V S ++   P + P IP  LE L  ++   AF +RRKTLR +L+         Q  I+
Sbjct: 173 PRVQSAIVCMRPRVVPVIPFGLEKLFGEMVLAAFSQRRKTLRNTLRHYLTIKDFDQLRID 232

Query: 257 TNLRAENLSIEDFCRIT 273
             LRAENLS+E +  IT
Sbjct: 233 PGLRAENLSLEQYSAIT 249


>gi|320159790|ref|YP_004173014.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1]
 gi|319993643|dbj|BAJ62414.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1]
          Length = 305

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 154/289 (53%), Gaps = 20/289 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           +N     +  +L  + + P+K +GQNFL D  IL++I ES+       V+EIG G G+LT
Sbjct: 23  LNLPPLPVAALLRSHGLAPRKSLGQNFLTDPAILRRIVESAELPPQAEVLEIGPGLGSLT 82

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           ++L  + AR+V+ +E D    P+L ++ S + N +E++  D L+ D  +  + S+   ++
Sbjct: 83  RVLAQV-ARRVVAVELDSTLIPLLDEVVSPYGN-VEVLHGDILQFDPARLMS-SAGYFVV 139

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           AN+PY I + ++ + + A   P   + + L  Q+EV ERI A         LSV      
Sbjct: 140 ANIPYYITSAVMRHLLEASIRP---QRVVLTIQREVAERICAVPGEMSLLALSVQVYGAP 196

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC----LESLKKITQEAFGKRRKTLR 238
           + T+   I    F+P PKV S V+     L+P P      LE   ++ +  F ++RKTLR
Sbjct: 197 RVTLR--IPAGAFYPPPKVDSAVVRV--DLSPQPRIPAEQLEIFFRLIRAGFSQKRKTLR 252

Query: 239 QSLKR-LG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            +L   LG      E+LL QAGI+ N RAE+L++E++  + +     ++
Sbjct: 253 NALSSGLGWKGERAESLLRQAGIDPNRRAESLALEEWALLVDAYVKAEE 301


>gi|319778500|ref|YP_004129413.1| Dimethyladenosine transferase [Taylorella equigenitalis MCE9]
 gi|317108524|gb|ADU91270.1| Dimethyladenosine transferase [Taylorella equigenitalis MCE9]
          Length = 259

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 138/264 (52%), Gaps = 19/264 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+FL D ++  +I           V+EIG G   LT +LL+     + VIE D+ 
Sbjct: 6   RKRFGQHFLTDQSVPDEIVRKLSLNASDCVVEIGPGLSALTNVLLS-KLNHLYVIEIDRD 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   +   ++L +I+ D L VDF  F    +P+RI+ NLPYNI + +LF+ +   
Sbjct: 65  LAAKLR--KTHDESKLTVIESDVLDVDFSIF---PTPLRIVGNLPYNISSPILFHLLK-- 117

Query: 142 TWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               + +S+     + QKEV +R+ A+  S  YGRLSV+   R K   + D+ P  F P 
Sbjct: 118 ----YADSVVDQHFMLQKEVVDRMVAKPGSSEYGRLSVMLQERYKMHSILDVPPEAFTPP 173

Query: 199 PKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P  +  P P   +   K+ Q+AF +RRK LR  LK    +       I 
Sbjct: 174 PKVDSAVVKMLPLASDRPKPKSYDVFSKVVQQAFSQRRKMLRGVLKSYDID--WEFLNIN 231

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
             LRAE+L ++D+ ++++ + + +
Sbjct: 232 EALRAEDLGVDDYIKLSDFILEKR 255


>gi|260888713|ref|ZP_05899976.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
 gi|330839885|ref|YP_004414465.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
 gi|260861582|gb|EEX76082.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
 gi|329747649|gb|AEC01006.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
          Length = 288

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 144/278 (51%), Gaps = 15/278 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  + +   K +GQNFL+D +++K I  ++   +G  V+EIG G G LTQ LL  GA
Sbjct: 13  RHILKAFGLRASKRLGQNFLVDGSVVKDIVAAAEIEEGDRVLEIGPGIGTLTQGLLEAGA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
             V  +E D++   +L +  + + + L I+  D LK D       + P ++ ANLPY I 
Sbjct: 73  H-VTAVELDKKLPAVLAETLAAY-DHLRIVPGDILKTDIRALME-NQPFKVAANLPYYIT 129

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T +L   +  +   P    +T++ QKEV ER+ A   S  YG LSV   + T+  ++ ++
Sbjct: 130 TPILLALL--EQHLPITHIVTMV-QKEVAERMIAAPGSKIYGALSVAVQYHTEPRIVREV 186

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG- 246
           +P  F P+P+V S+VI       P P  +   +   ++ + +FG+RRKTL  +L   G  
Sbjct: 187 APRSFIPAPEVASSVIACKKRGKP-PVEVTDERMFFRVARASFGQRRKTLANALLGTGAS 245

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                  L  A I+   R E LS+ +F R+ +  +  Q
Sbjct: 246 KDAVRRALDAAAIDEKRRGETLSLAEFARLADAFSAMQ 283


>gi|260663712|ref|ZP_05864600.1| dimethyladenosine transferase [Lactobacillus fermentum 28-3-CHN]
 gi|260551763|gb|EEX24879.1| dimethyladenosine transferase [Lactobacillus fermentum 28-3-CHN]
          Length = 295

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 147/287 (51%), Gaps = 22/287 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y I  KK  GQNFL + ++L  I  ++G      VIEIG G G LT+ L    A
Sbjct: 12  RAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKLAQ-AA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANL 125
            +V+ +E D+   P+L D+ + + N + ++  D LK +        F + + P++++ANL
Sbjct: 71  GEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVKVVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + +LF  +++      W ++ ++ QKEV +R+ A+  +  YG L++   +R    
Sbjct: 130 PYYITSPILFALLASQVE---WAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDYRMDVK 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQSLK 242
           + F++S   F P+P V S ++        +P      + L  + +  F  RRK+L  +LK
Sbjct: 187 VAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFGLIRGCFAHRRKSLWNNLK 246

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            + G++         +L +  I+   R E LS+ DF  + N + + +
Sbjct: 247 TIVGKDEDRLGKVKEVLDRLEIDPQTRPERLSLVDFINLANAMHEKK 293


>gi|332283296|ref|YP_004415207.1| dimethyladenosine transferase [Pusillimonas sp. T7-7]
 gi|330427249|gb|AEC18583.1| dimethyladenosine transferase [Pusillimonas sp. T7-7]
          Length = 261

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+FL D  ++  I           V+EIG G   LT  LL +    + V+E D+ 
Sbjct: 6   RKRFGQHFLTDDGVVDAIVRGIDPRHDDAVVEIGPGLSALTGPLLNV-LDHLTVVEIDRD 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+      P RL +I+ DAL VDF    ++ S +RI+ NLPYNI + LLF+ +++ 
Sbjct: 65  LAARLR--QGHKPERLTVIEGDALTVDFS---SLGSGLRIVGNLPYNISSPLLFHLMASA 119

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                      + Q+EV +R+ AQ +S  YGRLSV+   R +   +FD+ P  F P P+V
Sbjct: 120 E---HVRDQHFMLQREVIDRMVAQPSSGDYGRLSVMLQSRYRMHKLFDVPPEAFDPPPRV 176

Query: 202 TSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S V+    +P     P   ++ +++   AF +RRK LR+ L            GI    
Sbjct: 177 VSAVVRMAPLPDTRQKPKSGKAFEQVVARAFAQRRKMLRRGLADWAPSIDWDALGIPETA 236

Query: 260 RAENLSIEDFCRITNILTDN 279
           RAE LS+  F  +T+ L D 
Sbjct: 237 RAEELSVSQFMALTDHLLDK 256


>gi|160939614|ref|ZP_02086962.1| hypothetical protein CLOBOL_04506 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437405|gb|EDP15169.1| hypothetical protein CLOBOL_04506 [Clostridium bolteae ATCC
           BAA-613]
          Length = 292

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 150/290 (51%), Gaps = 21/290 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  ++++ I+  Y+   +K  GQNFL+D ++L KI  ++G      V+EIG G G +
Sbjct: 3   TLGNPKNTIE-IIQKYQFAFQKKFGQNFLIDTHVLDKIISAAGITGDDCVLEIGPGIGTM 61

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118
           TQ L    A KV+ +E D    PIL +    + N + +I  D LK+D  +    +N   P
Sbjct: 62  TQYLAE-HAGKVVAVEIDTNLLPILDETLKGYSN-VTVINSDILKLDMNQLVDEYNDGRP 119

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     ++      +++T++ QKEV +R+     S  YG LS+  
Sbjct: 120 IKVVANLPYYITTPIIMGLFESNVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAV 176

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRK 235
            +  K  ++ ++ P+ F P P V S VI    +  P P  ++    + ++ + +F +RRK
Sbjct: 177 QYYAKPYIVANVPPNCFIPRPNVGSAVIRLTRYKEP-PVQVDEPGVMFRLIRASFNQRRK 235

Query: 236 TLRQSLKR-----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILT 277
           TL+  L          E +   +   G+  ++R E L++E F  ++N  T
Sbjct: 236 TLQNGLNNSPEVPYTKEQIAVAIESLGVPASVRGEALTLEQFAGLSNYFT 285


>gi|326333241|ref|ZP_08199488.1| dimethyladenosine transferase [Nocardioidaceae bacterium Broad-1]
 gi|325948885|gb|EGD40978.1| dimethyladenosine transferase [Nocardioidaceae bacterium Broad-1]
          Length = 299

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 140/278 (50%), Gaps = 19/278 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++++ S   + P K  GQNF++D N +++I   SG      V+E+G G G+LT  +L  G
Sbjct: 15  VRSLASELDLRPTKQRGQNFVIDANTVRRIVRESGVDASDVVVEVGPGLGSLTLAILETG 74

Query: 70  ARKVIVIEKDQ---QFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           AR V  IE D+   +  P  +++ +    +   +I+ DAL+VD         P  ++ANL
Sbjct: 75  AR-VTAIEIDEVLAERLPRTIEEYAPDQADAFSLIRADALRVD---SVPGPPPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +S    P     L ++ Q EV +R+ A+  S  YG  SV   W     
Sbjct: 131 PYNVSVPVLLHLMS--LLPSLRHGL-VMVQAEVADRLAAKPGSKVYGVPSVKAAWYADVR 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKR 243
               I  +VF+P+P V S ++++  H  P       E +  +   AF +RRK LR  LK 
Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVYW-SHREPPSTEVSREEVFAVVDAAFAQRRKALRGVLKP 246

Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L G     E  L  AGI+   R E+L+I DF RIT  L
Sbjct: 247 LAGSADAAEKALVAAGIDPLARGESLTIADFVRITESL 284


>gi|39939217|ref|NP_950983.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M]
 gi|62900544|sp|Q6YPJ4|RSMA_ONYPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|39722326|dbj|BAD04816.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M]
          Length = 268

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 142/262 (54%), Gaps = 19/262 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D+N+L KI  +  S+    V+EIG G G LT++++   A+ V+  E D  
Sbjct: 6   KKKYGQNFLTDVNLLNKIV-TKASITDKNVLEIGPGKGALTKIIVP-QAKHVLAYEIDAT 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
             P L   + ++ N + II DD LK     DF+ +F+ +S + +I NLPY I + +LF  
Sbjct: 64  LKPFL---NFENHNNVNIIYDDFLKRDLLKDFDHYFSPNSQLSLIGNLPYYITSPILFKI 120

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I      P     T++ QKEVG R+ AQ N+ +Y  LSV+  +      + ++  H+FFP
Sbjct: 121 IDT----PQINDATIMIQKEVGMRLLAQPNNKNYNALSVIIQFLFSIEKIQEVKRHMFFP 176

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENLLH--- 251
           +PKV S VI    + N  P  L+   K  + +F ++RKTL  +L     L  E ++    
Sbjct: 177 APKVDSIVIKLTKNNNICPTFLQQFIKFVKASFKQKRKTLLNNLSCQFLLSKETIIPFFL 236

Query: 252 QAGIETNLRAENLSIEDFCRIT 273
           Q  I   +RAE +++E F ++T
Sbjct: 237 QHHIPLQIRAEQVTLETFQKLT 258


>gi|152973889|ref|YP_001373406.1| dimethyladenosine transferase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189028800|sp|A7GJV3|RSMA_BACCN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|152022641|gb|ABS20411.1| dimethyladenosine transferase [Bacillus cytotoxicus NVH 391-98]
          Length = 292

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 143/282 (50%), Gaps = 20/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K I+  Y    KK +GQNFL+D N+L +I + +        IEIG G G LT+ L    A
Sbjct: 11  KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDYAEIGPKGGAIEIGPGIGALTEQLAK-RA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           +KV+  E DQ+  PIL +  + + N + II  D LK +    F++ F     + ++ANLP
Sbjct: 70  KKVVAFEIDQRLLPILDETLAPYDN-VTIINKDVLKANVHEVFQEQFEEGQDVMVVANLP 128

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+   
Sbjct: 129 YYVTTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKDYGSLSIAIQYYTEVET 185

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S+VI  +    PI   ++     ++ + +F +RRKTL  +L   
Sbjct: 186 VMTVPRTVFVPQPNVDSSVIRLLKRPKPIVEVIDEKFFFEVVRASFAQRRKTLMNNLSNN 245

Query: 245 GG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                      E +L + GI+   R E LSIE+F  ++N L 
Sbjct: 246 LNDFPKDKELLERILTEIGIDPKRRGETLSIEEFAMLSNALV 287


>gi|195016027|ref|XP_001984325.1| GH15074 [Drosophila grimshawi]
 gi|193897807|gb|EDV96673.1| GH15074 [Drosophila grimshawi]
          Length = 415

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 155/292 (53%), Gaps = 23/292 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67
           +++ ++  YK+   K + QNFL+D  +  KI +S+G +D    V+E+G GPG +T+ +L 
Sbjct: 104 TIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRSILR 163

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
              +++I++EKD +F     +L++ +S    +++I  +D L+ + EK   + +  + +I 
Sbjct: 164 RQPQRLILVEKDARFTETLQLLRECASPLQMQVDIYHEDILRFNIEKHVPDTAQRLHLIG 223

Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           NLP++I TRLL NW    A     F  +   +TL FQKEV ERI AQ  S    RLSV++
Sbjct: 224 NLPFSISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAQLGSEQRCRLSVMS 283

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235
              T+  + F I    F P P+V   V+  +P   P   +P  L  ++++ +  F  R+K
Sbjct: 284 QIWTQPLLKFIIPGKAFVPKPQVDVGVVKVMPLKQPKTQLPFAL--VERVVRHIFSMRQK 341

Query: 236 TLRQSLKRL----GGE----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             R+    L    G E    NL   A ++  LR   LS+ +  R+ ++  ++
Sbjct: 342 YCRRGFGTLLPPDGREEITHNLFQLADVQDTLRPFELSVAECLRLADVYAEH 393


>gi|121611713|ref|YP_999520.1| dimethyladenosine transferase [Verminephrobacter eiseniae EF01-2]
 gi|166221713|sp|A1WS95|RSMA_VEREI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|121556353|gb|ABM60502.1| dimethyladenosine transferase [Verminephrobacter eiseniae EF01-2]
          Length = 284

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 135/260 (51%), Gaps = 24/260 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79
           P+K +GQ+FL D  I+  I ++     G  ++EIG G   LTQ L+  LG  ++ VIE D
Sbjct: 16  PRKRLGQHFLTDQRIIDAIVQAIAPQPGQPMVEIGPGLAALTQPLVERLG--RLTVIELD 73

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSP------IRIIANLPYNIGT 131
           +     L+  +      L++IQ D L+VDF        ++P      +R++ NLPYNI T
Sbjct: 74  RDLALRLRRHAH-----LQVIQADVLRVDFTALAQTLRATPPTPPTRLRVVGNLPYNIST 128

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            +LF+ ++  +     E    + QK+V ER+ A+     YGRLSV+  WR     +  + 
Sbjct: 129 PILFHLLAHGS---AIEDQHFMLQKQVVERMVAKPGGSDYGRLSVMLQWRYAMEKLLHVP 185

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           P  F P P+V S V+  +PH  P       L+++ Q AF +RRK L  +L R       H
Sbjct: 186 PASFAPPPRVDSAVVRMLPHAQPAAVSRPMLEELVQLAFSQRRKLLHHTLGRWLDA---H 242

Query: 252 Q-AG-IETNLRAENLSIEDF 269
           Q AG  +T  RAE + ++++
Sbjct: 243 QYAGRFDTRRRAEEVPVQEY 262


>gi|291547608|emb|CBL20716.1| dimethyladenosine transferase [Ruminococcus sp. SR1/5]
          Length = 291

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 155/293 (52%), Gaps = 21/293 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N  ++++ +L  Y  + +K  GQNFL+D ++L+KI ESSG      ++EIG G G +T
Sbjct: 6   LGNPKYTIE-VLQKYHFVFQKRFGQNFLIDEHVLEKIIESSGITKDDFILEIGPGIGTMT 64

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    AR+V  +E D    PILKD      N + +I +D LK D +K     N   P+
Sbjct: 65  QYLAEA-AREVAAVEIDSSLIPILKDTLKDWDN-VSVINNDILKTDIKKIADEKNGGKPV 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++      +      +S+T++ QKEV +R+     +  YG LS+   
Sbjct: 123 KVVANLPYYITTPIIMGLFEKNVP---VDSITVMVQKEVADRMQVGPGTKDYGALSLAVQ 179

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKT 236
           +  K  ++ ++ P+ F P PKV S VI    +  P P  ++    + ++ + +F +RRKT
Sbjct: 180 YYAKPEIVANVPPNCFMPRPKVGSAVIKLTRYEKP-PVDVKDEGLMFRLIRASFNQRRKT 238

Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           L   ++  G         E++ ++  +  N+R E L++E F  + N + D ++
Sbjct: 239 LVNGIRNSGDFSLSKEEIEDVFNRCDLPLNIRGEALTLEQFAMLANCIYDEKN 291


>gi|220904363|ref|YP_002479675.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868662|gb|ACL48997.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 279

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/278 (32%), Positives = 135/278 (48%), Gaps = 12/278 (4%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           H  K I++H     KK +GQ+FL   +   +IA          +IEIG GPG LT+ +  
Sbjct: 7   HMKKNIVTHTPRA-KKSLGQHFLRREDTCCRIAALIAPAAQDRIIEIGPGPGALTRAIEA 65

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
               +++++EKD+ +    + +   +   + I   DALK  + +  +   P +II NLPY
Sbjct: 66  TPHSRLLLLEKDRHWAAERQRLGGANTQAVLI---DALKFAWRRI-SPEEPWKIIGNLPY 121

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+ + L+++  S  T    W+    + QKEVG+R+ A   + HYG LSV      +  M 
Sbjct: 122 NVASPLIWDIFSRST---GWQRAAFMVQKEVGQRLAAHPGTGHYGALSVWVQSYARPRME 178

Query: 188 FDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-- 244
           F + P  F P PKV S V+ F P   N  P   E L ++ +  F +RRK L    +R   
Sbjct: 179 FVVGPGAFSPPPKVDSAVLSFEPLPANERPAHPELLSRLLRICFQQRRKQLGGVFRRAAQ 238

Query: 245 -GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            G E  LH A I+  LR E L+  DF RI        D
Sbjct: 239 PGLEKSLHDACIDPALRPEALTCSDFQRIAAFWASQLD 276


>gi|323495829|ref|ZP_08100897.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio sinaloensis DSM 21326]
 gi|323319045|gb|EGA71988.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio sinaloensis DSM 21326]
          Length = 268

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 13/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 E---YHKDVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P P   L  L ++ +E F +RRKT+R   K L     L    I 
Sbjct: 184 PKVDSAVVRLVPYEELPYPATSLNWLDRVCREGFNQRRKTVRNCYKGLVDAETLESLDIN 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
             +R ENL+++ F  + N L  N+
Sbjct: 244 PGMRPENLTLKQFVDLANWLDANR 267


>gi|198276988|ref|ZP_03209519.1| hypothetical protein BACPLE_03195 [Bacteroides plebeius DSM 17135]
 gi|198270513|gb|EDY94783.1| hypothetical protein BACPLE_03195 [Bacteroides plebeius DSM 17135]
          Length = 267

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 133/257 (51%), Gaps = 8/257 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + V+E+G G G LTQ LL    R + V+E 
Sbjct: 4   VKPKKFLGQHFLKDLQVAQDIADTVDACPALPVLEVGPGMGVLTQYLLK-KDRPLKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q  +   II+ D LK+D  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DFESVAYLRENFPQLGDH--IIEQDFLKMDLRQLFD-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A+  +  YG LSVL         +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAARPGNKTYGILSVLIQAWYSVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K+I +  F +RRKTLR S+  +  +     A    
Sbjct: 177 PKVKSAVIRMTRNETKELGCNEQLFKQIVKTTFNQRRKTLRNSISPILEKGNPLSADPIF 236

Query: 258 NLRAENLSIEDFCRITN 274
           N R E LS++DF  +TN
Sbjct: 237 NKRPEQLSVQDFIDLTN 253


>gi|325141930|gb|EGC64370.1| dimethyladenosine transferase [Neisseria meningitidis 961-5945]
 gi|325197917|gb|ADY93373.1| dimethyladenosine transferase [Neisseria meningitidis G2136]
          Length = 259

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 132/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF    NI    +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E++  ++N L 
Sbjct: 236 QDRAEHIAPEEYVALSNYLA 255


>gi|310657782|ref|YP_003935503.1| dimethyladenosine transferase [Clostridium sticklandii DSM 519]
 gi|308824560|emb|CBH20598.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Clostridium
           sticklandii]
          Length = 289

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 146/286 (51%), Gaps = 19/286 (6%)

Query: 3   MNN-KSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MNN  SH + K I+S Y     K +GQNFL+D ++L +I +S+      TVIEIG G G 
Sbjct: 1   MNNLASHKITKDIVSKYGFRFTKSLGQNFLVDEHVLSQIVDSAEIDSEDTVIEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118
           LT+  L+  A++VI IE D+   PIL +  +   N ++II  D LK D  +  N  SP  
Sbjct: 61  LTRE-LSYRAKQVISIEIDKNLIPILSETLADRDN-IKIINQDILKTDLHELVNEFSPDR 118

Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            ++++ANLPY I T ++  ++  +  P   +++ ++ QKEV  RI A  ++  YG LSV 
Sbjct: 119 KVKVVANLPYYITTPIIMRFLE-EKVP--LKTMVIMIQKEVANRINAVPSTKDYGSLSVA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRK 235
             +     ++       F P P V S VI   +     I    E L  ++ + AF KRRK
Sbjct: 176 VQYYCDTDIVAKAPKGAFIPEPGVDSAVIKLEVKEDKGIELIDEDLFFEVVKAAFSKRRK 235

Query: 236 TLRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITN 274
           TL  +L   G        +  L  A I+  LR E L ++ F  + N
Sbjct: 236 TLLNALSTFGNIGGKQEAKMALEIANIDAQLRGETLDMKQFASLAN 281


>gi|254509385|ref|ZP_05121470.1| dimethyladenosine transferase [Vibrio parahaemolyticus 16]
 gi|219547693|gb|EED24733.1| dimethyladenosine transferase [Vibrio parahaemolyticus 16]
          Length = 268

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 13/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 E---YHKDVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+   P P   L  L ++ +E F +RRKT+R   K L     L    I 
Sbjct: 184 PKVDSAVVRLVPYEELPYPATNLNWLDRVCREGFNQRRKTVRNCYKGLVDAETLESLDIN 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
             +R ENL+++ F  + N L  N+
Sbjct: 244 PGMRPENLTLKQFVDLANWLDANR 267


>gi|163753725|ref|ZP_02160848.1| dimethyladenosine transferase [Kordia algicida OT-1]
 gi|161325939|gb|EDP97265.1| dimethyladenosine transferase [Kordia algicida OT-1]
          Length = 260

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/258 (37%), Positives = 137/258 (53%), Gaps = 11/258 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK++GQ+FL D  + ++IA++        V+EIG G G LT+ LL        V E
Sbjct: 4   KVRAKKHLGQHFLKDEEVAQRIADTLTLNHYKNVLEIGPGMGVLTKYLLEKPV-TTYVCE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    LK    Q  N+  I+++D LK D +K F    P  II N PYNI T+++F  
Sbjct: 63  IDTESVAYLKAHYLQLSNK--ILEEDFLKYDLKKTFK-DEPFAIIGNFPYNISTQIVFKT 119

Query: 138 ISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           +   D  P F    + +FQKEV +RI A   +  YG LSVLT     A  +F + P+VF 
Sbjct: 120 LEMRDQIPEF----SGMFQKEVAQRICAPHGNKTYGILSVLTQAFYDAEYLFTVPPNVFK 175

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S V+  I   N  +PC  +   ++ + AF +RRKTLR SLK     + L +  I
Sbjct: 176 PPPKVDSGVMRLIRKENYTLPCEEKLFFRVVKTAFQQRRKTLRNSLKTFNLSDNLKEDTI 235

Query: 256 ETNLRAENLSIEDFCRIT 273
              LR E +S++ F  +T
Sbjct: 236 -FGLRPEQVSVQGFVDLT 252


>gi|89898917|ref|YP_521388.1| dimethyladenosine transferase [Rhodoferax ferrireducens T118]
 gi|119365053|sp|Q223E6|RSMA_RHOFD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|89343654|gb|ABD67857.1| dimethyladenosine transferase [Rhodoferax ferrireducens T118]
          Length = 261

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 139/273 (50%), Gaps = 22/273 (8%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K I +K  GQ+FL D  +++ I ++ G   G  ++EIG G   LTQ L+  LG   VI +
Sbjct: 2   KHIARKRFGQHFLTDGAMIEAIVDAIGPRPGQAMVEIGPGLAALTQPLVERLGQLTVIEL 61

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLL 134
           ++D      L      HP +L +I+ D LKVDF +      ++ +R++ NLPYNI T +L
Sbjct: 62  DRD------LAARLRAHP-QLVVIESDVLKVDFAQVAQALTTTKLRVVGNLPYNISTPIL 114

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ ++   +    E    + QKEV +R+ A   +  YGRLSV+  WR     +  + P  
Sbjct: 115 FHLLN---FIDVIEDQHFMLQKEVIDRMVAGPCTAAYGRLSVMLQWRYAMENVLLVPPES 171

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P+V S V+  +PH+NP       L ++ Q AF +RRK LR +L +      L Q G
Sbjct: 172 FEPPPRVNSAVVRMVPHVNPAAVDGHLLSELVQVAFSQRRKLLRHTLGQ-----WLQQKG 226

Query: 255 ----IETNLRAENLSIEDFCRITNILTDNQDIA 283
                +   RAE + + ++  +   L  +   A
Sbjct: 227 YADEFDVQRRAEEVPVAEYLALALKLATHSQAA 259


>gi|116492073|ref|YP_803808.1| dimethyladenosine transferase [Pediococcus pentosaceus ATCC 25745]
 gi|122266463|sp|Q03HF6|RSMA_PEDPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116102223|gb|ABJ67366.1| dimethyladenosine transferase [Pediococcus pentosaceus ATCC 25745]
          Length = 297

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 146/289 (50%), Gaps = 21/289 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N + + + IL  Y +  KK +GQNFL D N+L  I +++       VIE+G G G+
Sbjct: 5   MDIGNPTRT-RAILEKYGLSAKKSLGQNFLTDPNVLLNIVDAAEVSPEDDVIEVGPGIGS 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV----DFEKFFNIS 116
           LT+ +    A  V+  E D+    +L +  S + N + ++  D LK     + E   +  
Sbjct: 64  LTEQIAK-RAHHVLAFEIDRNLMNVLDETLSPYDN-ITVVNQDVLKANVNEEVENHLDGK 121

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             ++++ANLPY I T +L  ++ A T P   + + ++ QKEV ER+TAQ     YG LSV
Sbjct: 122 RRLKLVANLPYYITTPILKTFM-ASTLP--IDKMVVMMQKEVAERLTAQPGDKEYGSLSV 178

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRR 234
           +  +R    + FD+S  VF P PKV S ++   P      +P   +   K     F  RR
Sbjct: 179 VVQYRMNTQIEFDVSSKVFVPRPKVDSAIVSLTPRAGWEVMPEDDKDFFKTVHGCFMHRR 238

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITN 274
           K +  +++ L G         +N+L   GI+  +R E L++ DF ++ N
Sbjct: 239 KNIWNNMQGLYGKEPEIKAKIQNVLDDLGIDPQVRPERLTVLDFIKLHN 287


>gi|326436805|gb|EGD82375.1| dimethyladenosine transferase 1 [Salpingoeca sp. ATCC 50818]
          Length = 321

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 145/308 (47%), Gaps = 37/308 (12%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S+  +L  Y +   K + QNFLLD +I  K    +G L    VIE+G GPG+LT+ +L  
Sbjct: 8   SVAQLLRLYGVRALKDLSQNFLLDPSITDKFVRHAGKLKDKVVIEVGGGPGSLTRSILKA 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------------- 113
             RK+ VIEKD +  P+L  ++       EII  DAL +D+E+                 
Sbjct: 68  QPRKLYVIEKDTRMLPMLDLVAEASGGVAEIIPGDALHIDYEQLITQANVATQPTAAEGA 127

Query: 114 --NISSP----IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERI 162
             + ++P    + II NLP+ I T L+ +++         +     +LTL FQ+EVGERI
Sbjct: 128 DSSAAAPAETDLHIIGNLPFGIATPLILSYLRQLSRRDSAFARSRPTLTLCFQREVGERI 187

Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL 222
            A   +    R+SV++         F I    F P+PKV + V+ F P    +P  LE L
Sbjct: 188 CAPPRTKPRSRISVISQLYADVRPAFVIPSTAFVPAPKVEAMVVSFRPR-EQLPEGLEQL 246

Query: 223 -----KKITQEAFGKRRKTLRQSL-KRLGG----ENLLHQAGIETNLRAENLSIEDFCRI 272
                +++ +  +G R K LR    K +GG    +++L  AG     RA  LS   +  +
Sbjct: 247 TFDQMERVLRIGYGSRLKRLRHVFSKHVGGLQAADDMLASAGFPAETRAFFLSTRQWIDL 306

Query: 273 TNILTDNQ 280
                 +Q
Sbjct: 307 ATAFYQHQ 314


>gi|332798095|ref|YP_004459594.1| Ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter
           sp. Re1]
 gi|332695830|gb|AEE90287.1| Ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter
           sp. Re1]
          Length = 276

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 138/278 (49%), Gaps = 22/278 (7%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--AR 71
           +  Y I   K +GQ+FL+D   L  + E++       V+EIG G G LT   L LG  A+
Sbjct: 1   MKKYNIKADKRLGQHFLIDSRPLLSMIEAAQLSPEDEVLEIGPGLGVLT---LELGTRAK 57

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNI 129
           +V+ +EKD+Q  P+L D++    N + I+++D LK+D EK          ++IANLPY I
Sbjct: 58  RVVAVEKDRQLIPVLDDLTRDFKN-ICILEEDVLKLDLEKMSESLFGGRFKVIANLPYYI 116

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              ++   I             L+ QKEV +R+TA      YG LS+         M+  
Sbjct: 117 TNPIIMKIIENRNMVTLA---VLMVQKEVAQRLTACPGKKDYGILSIAVKLYADVNMICT 173

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLES-LKKITQEAFGKRRKTLRQSLKR---L 244
           I    F P PKV S V+       P +    ES   K+ + AFG+RRKT++ SLK    L
Sbjct: 174 IGRESFLPPPKVESAVVRLTLRQEPRVQLKDESFFFKVVEAAFGERRKTIKNSLKSRLAL 233

Query: 245 GGENL------LHQAGIETNLRAENLSIEDFCRITNIL 276
            G +L      L  AGI+   R E LSIE++ R+   L
Sbjct: 234 AGTDLDIIDKALEAAGIDALRRGETLSIEEYARLAEEL 271


>gi|164688862|ref|ZP_02212890.1| hypothetical protein CLOBAR_02510 [Clostridium bartlettii DSM
           16795]
 gi|164602066|gb|EDQ95531.1| hypothetical protein CLOBAR_02510 [Clostridium bartlettii DSM
           16795]
          Length = 288

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 146/280 (52%), Gaps = 17/280 (6%)

Query: 7   SH-SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           SH + K +++ +     K +GQNFL+D N++ +I E +   +   +IE+G G G LT+ +
Sbjct: 6   SHRATKEVVNKHNFKFSKSLGQNFLIDDNVIDRILEGARLSETDRIIEVGPGIGTLTREM 65

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRII 122
             + A  V+ IE D+   PILK+  +   N +E++ +D LKVD +   N      P++++
Sbjct: 66  GKV-AENVVAIEIDKTLIPILKETLADLDN-VEVVNEDILKVDVQGLINEKLNGGPVKLV 123

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++  ++  D   P  + + ++ QKEV +R+ A+ ++  YG LSV   +  
Sbjct: 124 ANLPYYITTPIVMKFLEEDI--PVTD-IVVMVQKEVADRMNAKPSTKDYGALSVAVQYYC 180

Query: 183 KATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
              ++     H+F P P V S VI  H       +    +   K  + +FG+RRKTL  S
Sbjct: 181 DTEIVAKAPRHMFVPQPNVDSIVIGLHVRDEKKYVVDNEDIFFKTVKASFGQRRKTLLNS 240

Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITN 274
           L  LG          L  A I+   R E LSI++F  ++N
Sbjct: 241 LGGLGFLSKDEIREALQAANIDEKRRGETLSIDEFANLSN 280


>gi|225386275|ref|ZP_03756039.1| hypothetical protein CLOSTASPAR_00018 [Clostridium asparagiforme
           DSM 15981]
 gi|225047554|gb|EEG57800.1| hypothetical protein CLOSTASPAR_00018 [Clostridium asparagiforme
           DSM 15981]
          Length = 303

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 144/281 (51%), Gaps = 20/281 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y+ + +K  GQNFL+D ++L KI  ++G      V+EIG G G +TQ L    AR+
Sbjct: 28  IIQKYQFVFQKKFGQNFLIDPHVLDKIITAAGIGPEDCVLEIGPGIGTMTQYLAE-HARQ 86

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129
           VI +E D    PIL +    + N + +I DD LKVD  +     N   PI+++ANLPY I
Sbjct: 87  VIAVEIDANLIPILGETLKDYSN-VTVINDDILKVDINRLVDEHNGGKPIKVVANLPYYI 145

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++     +       +++T++ QKEV +R+     S  YG LS+   +     ++ +
Sbjct: 146 TTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQYYASPYIVAN 202

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR--- 243
           + P+ F P P V S VI    +  P P  +     + ++ + +F +RRKTL+  L     
Sbjct: 203 VPPNCFIPRPNVGSAVIRLTRYKEP-PVRVTDPALMFRLIRASFNQRRKTLQNGLNNSPE 261

Query: 244 --LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDN 279
                EN+   +   G+  ++R E L++E F  + N  T++
Sbjct: 262 LAYTKENIAEAIAGLGLPASVRGEALTLEQFAALANYFTEH 302


>gi|269468227|gb|EEZ79917.1| dimethyladenosine transferase, rRNA methylation [uncultured SUP05
           cluster bacterium]
          Length = 254

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 135/253 (53%), Gaps = 13/253 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+ +I  +        ++EIG G G +T  LL     ++ VIE D  
Sbjct: 9   RKRFGQNFLTDARIVDRIIATIAPKKNDNLLEIGPGKGAMTLPLLE-ELNQLHVIEIDTD 67

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +L+    ++   L I Q DALK D  K   + +P+R++ NLPYNI + +LF+ ++  
Sbjct: 68  LIALLQSFGKEN---LIIHQGDALKFDVSK---LPAPLRVVGNLPYNISSPILFHLLNNR 121

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +    + +  + QKEV ER+ A   +  YGRLSV+     +  M+F + P  F P+PKV
Sbjct: 122 EY---IQDMIFMLQKEVVERMVASNGNKTYGRLSVMIQAFFEVEMIFVVPPESFEPAPKV 178

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S +++  P    +   +   +KI + +F +RRKTLR  LK L  +    Q  I+ + RA
Sbjct: 179 DSAIVYLKPLEKNLIDDITVFEKIVKASFAQRRKTLRNCLKSLLTQ---EQTSIDLSQRA 235

Query: 262 ENLSIEDFCRITN 274
           E LS+ +F  +T+
Sbjct: 236 EMLSVNEFITLTS 248


>gi|114565628|ref|YP_752782.1| rRNA (adenine-N(6)-)-methyltransferase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114336563|gb|ABI67411.1| dimethyladenosine transferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 294

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 154/291 (52%), Gaps = 19/291 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    ++  ++ Y I P+K  GQNFL+D NIL+KIA          ++EIG G G 
Sbjct: 1   MKRTDSLSGIRYYMNKYGIHPRKKWGQNFLVDGNILRKIAHLCNPGCEKLLVEIGPGLGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116
           LT+ L  + ++ V+ IE D      L + S Q  N + ++  D L++D E+  + +    
Sbjct: 61  LTRELAGI-SKGVLAIEIDFGLREALAE-SLQGLNNIRLLFADILQIDLEEELSKAFGGE 118

Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
             S  ++ AN+PYNI T ++F  +   +     ES TL+ QKEV  RI A  +S  YG L
Sbjct: 119 DISGYKVCANIPYNITTPIIFKLLETCSQ---MESATLMMQKEVASRILASPDSKEYGLL 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLES-LKKITQEAFGK 232
           +++T +  +A  +  +S + F+P P+V S+VI   P     +    ES  KK+ + +F K
Sbjct: 176 TLMTAYYAEAEYLMPVSRNCFYPRPEVDSSVIQLRPIKGKRVQVKDESNFKKLLRVSFQK 235

Query: 233 RRKTLRQ------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           RRKT+        S+++    ++L+  GI+   R ENLSIE F  I++ L 
Sbjct: 236 RRKTILNICVDLFSVEKAEIHSILNSLGIDPKSRPENLSIEQFALISDTLV 286


>gi|329942659|ref|ZP_08291438.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10]
 gi|332287254|ref|YP_004422155.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
 gi|254574590|gb|ACT68006.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
 gi|313847840|emb|CBY16834.1| dimethyladenosine transferase [Chlamydophila psittaci RD1]
 gi|325506928|gb|ADZ18566.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
 gi|328814919|gb|EGF84908.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10]
 gi|328914500|gb|AEB55333.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
          Length = 278

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/268 (35%), Positives = 139/268 (51%), Gaps = 23/268 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK + QNFL+D NIL+KI   S    G  V+EIG G G LT++L+  GA  V+ +EKD 
Sbjct: 20  PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAH-VVALEKD- 77

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWI 138
              P+ ++   Q P  LEI   DA K    +  +       R++ANLPY++ T LL    
Sbjct: 78  ---PMFEETLKQLPIHLEIT--DACKYPLSQLQDKGWQGKGRVVANLPYHVTTPLLTKLF 132

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                P  W+++T++ Q EV  RI AQ     YG L++   +       F +SP  F P 
Sbjct: 133 L--EVPNQWKTVTVMIQDEVARRIKAQPGGKEYGSLTIFLQFFVDVRYAFKVSPGCFLPK 190

Query: 199 PKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           P+V+S V+H       P   P+     SL   T+ AFG+RRK L  +LK L  +  + +A
Sbjct: 191 PQVSSAVVHMTVKDRFPLEEPLRTKFFSL---TRAAFGQRRKLLANALKDLYPKERVFEA 247

Query: 254 GIETNL----RAENLSIEDFCRITNILT 277
             + N     R E LS++D+ ++  +L+
Sbjct: 248 LSQLNFSDKTRPETLSLDDYLKLFELLS 275


>gi|257066995|ref|YP_003153251.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548]
 gi|256798875|gb|ACV29530.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548]
          Length = 280

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 140/272 (51%), Gaps = 15/272 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTL 68
           +K I+  Y     K +GQNFL+D N ++KI +++  +D   V+EIG G G +T +M  T 
Sbjct: 10  VKDIIDLYNFRFSKSLGQNFLIDKNFVEKIVDAA-DVDSSNVLEIGPGIGTITYEMAKT- 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANL 125
            A+KV+ IE D    PI+ +   +  N  ++I +D LK D  +           ++++NL
Sbjct: 68  -AKKVVAIEIDSSLIPIIGENMEEFDN-FKLIHEDILKADLGRIIEEEFAGEDFKVVSNL 125

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T ++   I  D  P     +T++ QKEV +R+ A + S  Y  LSV   + + A 
Sbjct: 126 PYYITTPIIEKLIETD-LP--CRDMTIMVQKEVADRMLADEKSKDYSSLSVFIKYYSDAE 182

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            + ++   VF P PK+ STV+             + L  +    F KRRKT+  SL    
Sbjct: 183 KITNVPKSVFMPQPKIDSTVLKLNLRKYRDDVDEKKLFALVHAGFNKRRKTILNSLSDAC 242

Query: 246 GENLLHQA----GIETNLRAENLSIEDFCRIT 273
            +  L  A    GI+ NLRAENLS++DF  +T
Sbjct: 243 EKEKLRLAFDKLGIKNNLRAENLSLDDFINLT 274


>gi|297624761|ref|YP_003706195.1| dimethyladenosine transferase [Truepera radiovictrix DSM 17093]
 gi|297165941|gb|ADI15652.1| dimethyladenosine transferase [Truepera radiovictrix DSM 17093]
          Length = 264

 Score =  131 bits (330), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 141/267 (52%), Gaps = 20/267 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L  + +   K  GQNFL+D  +L+ I  ++      TV+E+G G G LT+ L    
Sbjct: 1   MRELLERHGLRADKGFGQNFLVDEGVLRSIVAAAELGPQSTVLEVGPGLGVLTRELAARA 60

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            R VI +E D++  P+L++  +   N + ++  D L  D       S+   ++ANLPYN+
Sbjct: 61  GR-VISVELDRRLLPVLQETLAGLGN-VTLVHGDGLTFDLSCLPEGSA---MVANLPYNV 115

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT +L   + +  +      + +L Q+EV ER++A   +P YG LSV+     +A  +  
Sbjct: 116 GTPILVRALESGRF----ARVVVLLQREVAERLSATPGTPAYGALSVVVAHFGRARSVRL 171

Query: 190 ISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-- 245
           + P  F P P+VTS+V+     P   P P    +L ++ + AF  RRKTL+++L   G  
Sbjct: 172 VKPSAFSPPPEVTSSVVRLDLTPGRAPDP----ALFRLVRHAFAHRRKTLKKNLLMAGYP 227

Query: 246 GENL---LHQAGIETNLRAENLSIEDF 269
            E +   L   G+E  +RAE LS+E F
Sbjct: 228 AERVARALQTLGLEAQVRAERLSVEQF 254


>gi|238786684|ref|ZP_04630485.1| Dimethyladenosine transferase [Yersinia frederiksenii ATCC 33641]
 gi|238725052|gb|EEQ16691.1| Dimethyladenosine transferase [Yersinia frederiksenii ATCC 33641]
          Length = 222

 Score =  131 bits (330), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 119/210 (56%), Gaps = 15/210 (7%)

Query: 75  VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIG 130
           VIE D+     L    + HP   ++L I Q+DA+KV+F +   ++  P+R+  NLPYNI 
Sbjct: 14  VIELDRDLAARL----ASHPQLKDKLTIHQEDAMKVNFSELAKLAGQPLRVFGNLPYNIS 69

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V+  +      + ++
Sbjct: 70  TPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLEV 126

Query: 191 SPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            P  F P+PKV S V+  IPH+   NP+   +  L +IT +AF +RRKT+R SL  L   
Sbjct: 127 PPTAFTPAPKVDSAVVRLIPHVQMPNPV-GDVRMLSRITTQAFNQRRKTVRNSLGDLFTP 185

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 186 EQLIELGIDPILRAENISVAQYCKLANWLS 215


>gi|154494071|ref|ZP_02033391.1| hypothetical protein PARMER_03416 [Parabacteroides merdae ATCC
           43184]
 gi|154086331|gb|EDN85376.1| hypothetical protein PARMER_03416 [Parabacteroides merdae ATCC
           43184]
          Length = 290

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 137/267 (51%), Gaps = 23/267 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           PKK +GQ+FL DL I ++IA++      + V+EIG G G LTQ LL  G   + V+E D 
Sbjct: 35  PKKALGQHFLKDLQIAERIADTLSDYKQLPVLEIGPGMGVLTQFLLEKG-HDLTVVELDM 93

Query: 80  ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                 +Q FP+L+          +I+ +D L++D  K F       +I N PYNI +++
Sbjct: 94  ESVDYLEQNFPVLEG---------KILAEDFLRLDLGKLF--PDQFCVIGNYPYNISSQI 142

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     + + QKEV ER+ A   S  YG LSVL     +   +F +S +
Sbjct: 143 FFKVLDYKEHIP---CCSGMIQKEVAERLAAGPGSKTYGILSVLLQAWYEVEYLFTVSEN 199

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           VF P PKV S VI  + +      C E L K + + +F +RRKTLR S+K L G++    
Sbjct: 200 VFDPPPKVKSAVIRMVRNDRKSLGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDY 259

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +    N R E LS+E F  +T I   N
Sbjct: 260 SLPIFNKRPEQLSVEQFVELTLITERN 286


>gi|218132712|ref|ZP_03461516.1| hypothetical protein BACPEC_00573 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992438|gb|EEC58441.1| hypothetical protein BACPEC_00573 [Bacteroides pectinophilus ATCC
           43243]
          Length = 296

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 145/292 (49%), Gaps = 24/292 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N +++L+ I+  Y    +K  GQNFL+D N+++KI   +G      V+EIG G G +TQ+
Sbjct: 9   NPTNTLE-IIKKYGFGFQKRFGQNFLIDGNVVEKIVREAGITKDDFVLEIGPGIGTMTQI 67

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRI 121
           L    AR+V  +E D+   PIL +  + + N + +I +D LKVD  K     N   PI++
Sbjct: 68  LCE-NAREVAAVEIDKNLIPILAETLAPYDN-VSVINEDILKVDVRKLAEEKNDGRPIKV 125

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++     +       ES+T++ QKEV +R+     +  YG LS+   + 
Sbjct: 126 VANLPYYITTPIIMGLFESHVP---LESITIMVQKEVAQRMQVGPGTKDYGALSLAVQFY 182

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQ 239
             A ++  +    F P P V S VI  + H + P+    E    ++ + AF +RRKTL  
Sbjct: 183 ADAQIVLKVPASCFMPRPNVDSAVIKLVRHEDAPVKVKDEQFMFRVIRAAFNQRRKTLAN 242

Query: 240 SL---KRLGGEN----------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           SL     L G             L   G+   +R E L++  F  + + L +
Sbjct: 243 SLANSSELNGSGHACTREDVTTALEAMGLPAGIRGEALTLAQFGELADRLIE 294


>gi|329947570|ref|ZP_08294729.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328523885|gb|EGF50965.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 367

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 131/270 (48%), Gaps = 16/270 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P K +GQNF+ D   +++I  S+G     TV+EIG G G+LT  LL  GAR V  +E 
Sbjct: 81  IRPTKTLGQNFVHDAGTVRRIVRSAGVRPDDTVLEIGPGLGSLTLALLETGAR-VSAVEI 139

Query: 79  D---QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNIGTR 132
           D    +  P+ + D   +   RL +I+ DAL +  E       P   R++ANLPYN+   
Sbjct: 140 DPVLARALPVTVADRMPEAAGRLGVIEADALSITAEALSGAEQPPPTRLVANLPYNVAVP 199

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +L   + A    P  E++T++ Q EV +R+ A   S  YG  SV   W   A     IS 
Sbjct: 200 VLLTVLEAL---PSLETVTVMVQAEVADRLAAAPGSRTYGVPSVKAAWYAAARRTLTISR 256

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           HVF+P P V S ++  +    P      E +  +   AF +RRKTLR++L    G     
Sbjct: 257 HVFWPVPNVDSALVELVRRRPPTTRATREQVFAVVDAAFAQRRKTLRKALAEAAGGADAA 316

Query: 252 QA-----GIETNLRAENLSIEDFCRITNIL 276
           +A     GI+   R E L I  F  +   L
Sbjct: 317 EAALRATGIDPTRRGETLDITAFAALAEAL 346


>gi|326389221|ref|ZP_08210789.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994584|gb|EGD53008.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus JW
           200]
          Length = 273

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 141/263 (53%), Gaps = 16/263 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNF+ D NIL KI  +SG      V+EIG G G LT+ L     +KVI  E D++ +  
Sbjct: 13  GQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEELAK-RVKKVISFEIDRELYEA 71

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADT 142
            K+      N + II +D +KVD  K  N      P +++ANLPY I + ++   +    
Sbjct: 72  TKE-KLNIYNNVIIINEDIMKVDLNKIANEYFEGKPFKVVANLPYYITSPIIMMLLECK- 129

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
              F + +T+L QKEV ERI A   +  YG L+V   ++ K   +F++ P VF P PKV 
Sbjct: 130 ---FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKKLFNLPPSVFVPPPKVD 186

Query: 203 STVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGIETNL 259
           S+++   I   + +    E L   + + AFG+RRK L  +LK LG  + ++ +A   +NL
Sbjct: 187 SSLVKLEILDKSLVEVKDERLFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSNL 246

Query: 260 ----RAENLSIEDFCRITNILTD 278
               R E LSIE+F  + N++ D
Sbjct: 247 SPQRRGETLSIEEFAALANVIYD 269


>gi|304405864|ref|ZP_07387522.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9]
 gi|304345107|gb|EFM10943.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9]
          Length = 303

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 144/282 (51%), Gaps = 20/282 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLG 69
           + I+  Y    KK +GQNFL+D NIL KI  ++  LDG    +EIG G G LTQ L    
Sbjct: 22  RDIVKKYGFEFKKSLGQNFLIDQNILHKIV-AAAELDGTKGALEIGPGIGALTQHL-ARS 79

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A +V  +E D +  PIL+D  +   N +E++  D LK++    F + F   S I ++ANL
Sbjct: 80  AGRVTAVEIDNRLIPILRDTLAGEAN-VEVVHADVLKLNLHELFAERFEGLSGISVVANL 138

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T +L   +  +  P   E + ++ QKEV +R+ A+     YG LSV   +  + +
Sbjct: 139 PYYVTTPILMKLLE-ERLP--LEHIVVMIQKEVADRMAAKPGGKEYGSLSVAVQYYCEPS 195

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243
           ++  +   VF P P V S VI       P     +     +  Q +F +RRKTL  ++  
Sbjct: 196 IVCTVPHTVFIPQPNVDSAVIKLSLREKPAVETRDEAHFFRTVQASFAQRRKTLMNNMSS 255

Query: 244 LGGEN-------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
             G++       ++   GI+ + R E LS+E+F +++  L D
Sbjct: 256 WIGKDHRETLTSIMEGCGIQPSRRGETLSLEEFAKLSAALYD 297


>gi|328954033|ref|YP_004371367.1| Ribosomal RNA small subunit methyltransferase A [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454357|gb|AEB10186.1| Ribosomal RNA small subunit methyltransferase A [Desulfobacca
           acetoxidans DSM 11109]
          Length = 287

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 139/283 (49%), Gaps = 17/283 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S K +   +++ P + +GQ+FLL  +  +++  +        V+EIGAG G LT  L   
Sbjct: 5   SPKVLCRRHRLTPNRSLGQHFLLHPDQARRLVAALELRGQEVVVEIGAGLGALTYFLAES 64

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPY 127
           G R VI +E D++  PIL        + + ++  DALK D+          + +  NLPY
Sbjct: 65  GGR-VIALELDRRLIPILTTEVLPGFSNVMVVSQDALKFDYLALSREEGQSLTVAGNLPY 123

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + LLF  +   T       +  + Q+EVG R+ AQ     YG LSVL  +      +
Sbjct: 124 QITSPLLFKLMGVKTA---IRIMLFMVQQEVGLRLMAQPGGKDYGILSVLIQYHFHLRRL 180

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLG 245
           F + P  F+P+PKV S V+ F P L P P  +  + L ++ + AF  RRKTLR +L    
Sbjct: 181 FLLKPSNFYPAPKVDSVVLGFRPRL-PEPSAINEDFLAQVVKAAFSTRRKTLRNTLTAQS 239

Query: 246 G---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                       +LH   I+   RAE LS++DF R++N L + 
Sbjct: 240 SLLRASPAVILAILHDLRIDPGRRAETLSVDDFVRLSNRLAEK 282


>gi|306820341|ref|ZP_07453980.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551670|gb|EFM39622.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 287

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 140/273 (51%), Gaps = 17/273 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+  Y     K +GQNFL++ NIL KI ES+       V+EIG G G LTQ L    A+K
Sbjct: 14  IIKKYGFKMTKSLGQNFLINENILDKIIESADISSDDVVLEIGTGIGTLTQRLCE-NAKK 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE---KFFNISSPIRIIANLPYNI 129
           VI +E D+   PIL +  S + N + II  D LK D     K  +I+  I+++ANLPY I
Sbjct: 73  VIAVEIDRNLIPILNETLSNYDN-ITIINKDILKTDINEELKNLSINQKIKVVANLPYYI 131

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   +         + + L+ QKEV +R+ A  ++  YG LS+   +     ++  
Sbjct: 132 TTPIIMKVLEDKVN---VDCMVLMLQKEVADRMNASPSTKDYGSLSIAVQYYCDTAIVCK 188

Query: 190 ISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSL---KRL 244
           +    F P P V S V+  + +    +    E L  KI + +F KRRKT+  SL   + L
Sbjct: 189 VPKSSFIPEPNVDSLVLKLVVNEKRNVDISNEDLFFKIVRGSFSKRRKTILNSLSNYEDL 248

Query: 245 GGEN----LLHQAGIETNLRAENLSIEDFCRIT 273
           G ++    LL  +GI++  R E LSI +F  + 
Sbjct: 249 GDKDKIQKLLEISGIDSKRRGETLSIYEFANLA 281


>gi|169824244|ref|YP_001691855.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328]
 gi|167831049|dbj|BAG07965.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328]
          Length = 283

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 140/278 (50%), Gaps = 18/278 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K IL  +     K +GQNFL+D N+++ I + S   +   VIEIG G G LT+ L+   
Sbjct: 11  IKEILDKFGFKFSKSLGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVD-K 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            + +  IE D +   +LK       N  +II +D LKVD  +  +     +++ANLPY I
Sbjct: 70  CKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVDLNELNHEDKKFKVVANLPYYI 128

Query: 130 GTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
            T +   LFN+          ES+T++ QKEV  R+ A   S  Y  LS+     + A +
Sbjct: 129 TTPIIEHLFNY------RDIIESITVMVQKEVANRMVADVGSKDYASLSLFVKQNSDAKI 182

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---- 242
           + +    VF P PKV S V++            E L+++ +  F KRRKT+  S      
Sbjct: 183 ILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILNSFTSGFV 242

Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILT 277
            +  E L   L + G++ NLRAENLS+ED+  I   L+
Sbjct: 243 NVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280


>gi|303234855|ref|ZP_07321480.1| dimethyladenosine transferase [Finegoldia magna BVS033A4]
 gi|302493973|gb|EFL53754.1| dimethyladenosine transferase [Finegoldia magna BVS033A4]
          Length = 283

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 140/278 (50%), Gaps = 18/278 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K IL  +     K +GQNFL+D N+++ I + S   +   VIEIG G G LT+ L+   
Sbjct: 11  IKEILDKFGFKFSKALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVD-K 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            + +  IE D +   +LK       N  +II +D LKVD  +  +     +++ANLPY I
Sbjct: 70  CKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVDLNELNHEDKKFKVVANLPYYI 128

Query: 130 GTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
            T +   LFN+          ES+T++ QKEV  R+ A   S  Y  LS+     + A +
Sbjct: 129 TTPIIEHLFNY------RDIIESITVMVQKEVANRMVADVGSKDYASLSLFVKQNSDAKI 182

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---- 242
           + +    VF P PKV S V++            E L+++ +  F KRRKT+  S      
Sbjct: 183 ILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILNSFTSGFV 242

Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILT 277
            +  E L   L + G++ NLRAENLS+ED+  I   L+
Sbjct: 243 NVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280


>gi|288554650|ref|YP_003426585.1| dimethyladenosine transferase [Bacillus pseudofirmus OF4]
 gi|288545810|gb|ADC49693.1| dimethyladenosine transferase [Bacillus pseudofirmus OF4]
          Length = 302

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 138/280 (49%), Gaps = 19/280 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y    KK +GQNFL+D N+L+ I +++   +    IEIG G G LT+ L     
Sbjct: 22  KEILKKYGFNFKKSLGQNFLIDTNVLRNIVDAANLDETSGAIEIGPGIGALTEQLAK-RV 80

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
            +V+  E DQ+  P+LKD  S + N ++II  D LK D  +     F     + ++ANLP
Sbjct: 81  DQVVAFEIDQRLLPVLKDTLSPYDN-VQIIHSDVLKADINEAIKAHFKDGQDLMVVANLP 139

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   +     P     + ++ Q EV ERI A+  +  YG LS+   +  +A  
Sbjct: 140 YYVTTPILMKLLEL-KLP--IRGIVVMIQAEVAERIAAKPGTKDYGSLSIAAQYYAEAEK 196

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--- 241
           +  +   VF P P+V S V+       P    ++     K+   +F  RRKT+  +L   
Sbjct: 197 VLTVPASVFVPQPRVDSAVLRLTIRQKPAVEVIDEQYFFKVFHASFANRRKTILNNLVHN 256

Query: 242 -----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                ++   E  L +A I+   R E LSIE+F ++++ L
Sbjct: 257 LASKSQKAEIEQALAEADIDPKRRGETLSIEEFAKLSDSL 296


>gi|195174159|ref|XP_002027848.1| GL16283 [Drosophila persimilis]
 gi|194115524|gb|EDW37567.1| GL16283 [Drosophila persimilis]
          Length = 337

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 153/291 (52%), Gaps = 23/291 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67
           +++ ++  YK+   K + QNFL+D  +  KI +S+G +D    V+E+G GPG +T+ +L 
Sbjct: 20  TIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRSILR 79

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
              +++I++EKD++F     +L++ +S    +++I  DD L+ + E+   +++  I +I 
Sbjct: 80  RQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDMTQRIHLIG 139

Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           NLP++I TRLL NW +  A     F  +   +TL FQKEV ERI A   S    RLSV++
Sbjct: 140 NLPFSISTRLLINWYADLAARRGAFRRNDTCMTLTFQKEVAERICAPVGSEQRCRLSVMS 199

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235
              T+  M F I    F P P+V   V+  IP   P   +P  L  ++++ +  F  R+K
Sbjct: 200 QIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFSL--VERVVRHIFSMRQK 257

Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             R+    L          + L  +A +   LR+  LS+    R+ +   +
Sbjct: 258 YCRRGYGTLLPPDSREETTQTLFQRADVRDTLRSFELSVPQCLRLADAYAE 308


>gi|169335103|ref|ZP_02862296.1| hypothetical protein ANASTE_01510 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257841|gb|EDS71807.1| hypothetical protein ANASTE_01510 [Anaerofustis stercorihominis DSM
           17244]
          Length = 287

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 18/286 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   NK +++  I + Y    KK +GQNFL D NI+ KI +S    D   V+E+G G G+
Sbjct: 1   MKATNK-NTISEITNKYDFRFKKDLGQNFLTDENIVLKIVDSLELTDDEVVLEVGPGMGS 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNIS 116
           LTQ L    A KV  +E D +   +L++  S++ N +EII  D LK D     E     +
Sbjct: 60  LTQKLAE-RAYKVYAVEIDTRAVNMLEETLSEY-NNIEIINKDILKTDLREILEDAIKEN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             I+ I+NLPY I + +L   +        +E++ ++ QKEV  R+ A+ N+  Y   ++
Sbjct: 118 RKIKFISNLPYYITSPILMKVLEDKVM---FENIVVMLQKEVATRLNAKVNTKDYSSFTI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRR 234
              +  +   +F++   VF P PKV STV+  +P           +   K+ + AF  RR
Sbjct: 175 AVDYYAEVERLFNVPKTVFVPMPKVDSTVLRVVPRKESKVDVDNQDMFFKVVKAAFMNRR 234

Query: 235 KTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITN 274
           K +  SL           +N L  +G++  +RAEN++IE F +++N
Sbjct: 235 KMVFNSLANGLAVNKDLLKNALLNSGLDEKVRAENITIEQFAKLSN 280


>gi|115611397|ref|XP_001177234.1| PREDICTED: similar to transcription factor B1, mitochondrial
           [Strongylocentrotus purpuratus]
 gi|115613229|ref|XP_791286.2| PREDICTED: similar to transcription factor B1, mitochondrial
           [Strongylocentrotus purpuratus]
          Length = 259

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 128/249 (51%), Gaps = 15/249 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  Y +  +K++ QNFLLDL +  KI   +G+L G  V E+G GPG +T+ ++  
Sbjct: 11  TIREIIRLYGLRAEKHLAQNFLLDLKLTDKIVRQAGNLQGAHVCEVGPGPGGITRSIINR 70

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119
           G + ++VIEKD +F P L+ ++     R+ +  DD L+V+    F         +    +
Sbjct: 71  GVQDLLVIEKDTRFIPSLEMLTEATEGRVRVACDDILRVNLADAFPHHIKKDWKDDPPNL 130

Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPF---WESLTLLFQKEVGERITAQKNSPHYGRL 174
            I+ NLP+N+   L+  W+   AD   PF      + L FQKEV ER+TA        RL
Sbjct: 131 HIVGNLPFNVSLPLMLRWLESVADRTGPFSFGRTRMLLTFQKEVAERLTAPPGDDQRSRL 190

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKR 233
           S++     +    F I    F P P++   V+H  P  +P I    + ++K+ +  F  R
Sbjct: 191 SIMAQHLCQVKQCFVIPGAAFVPKPQIDVGVVHLTPLRDPEIDAPFKLVEKLVRSVFHFR 250

Query: 234 RKTLRQSLK 242
           +K  ++ ++
Sbjct: 251 KKYCKRGVE 259


>gi|307184319|gb|EFN70777.1| Dimethyladenosine transferase 1, mitochondrial [Camponotus
           floridanus]
          Length = 348

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 142/292 (48%), Gaps = 26/292 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S++ IL  Y++   K + QNFLLD  ++ KI   SG L G  V+E+G GPG LT+ +L  
Sbjct: 11  SIRDILKLYRLNAIKRLSQNFLLDQRLIDKIISKSGHLTGSQVLEVGPGPGGLTRSILKQ 70

Query: 69  GARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP------- 118
             ++++V+EKD++F P   +L D       +++II DD  K++ E  F +          
Sbjct: 71  VPKRLVVVEKDRRFKPTLDMLADSFGAINGQMDIIYDDITKINLENLFPMEEKRDWDDKN 130

Query: 119 --IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             I II NLP+N+ T L+  W+ A       W      +TL FQKEV ER+ A  +    
Sbjct: 131 PDIYIIGNLPFNVSTPLIIKWLHAIAERRGPWAFGRTKMTLTFQKEVAERLVADVSHHQR 190

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+    T   + F I    F P P V   V+ F P + P      +  +KIT+  F
Sbjct: 191 CRLSVMAQTWTFPVLRFIIPGSAFVPKPDVDVGVVSFTPLVKPRTQHDFKFFEKITRHVF 250

Query: 231 GKRRKTLRQSLKRLGGENLLHQAG--------IETNLRAENLSIEDFCRITN 274
             R+K   + ++ L   +   + G        ++  LRA  L++ D  R+  
Sbjct: 251 SFRQKYSIRCIETLFPLDCRKELGLMMYKLSDLDPKLRAFQLTVHDIDRLAT 302


>gi|332524712|ref|ZP_08400911.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332108020|gb|EGJ09244.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 254

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 129/261 (49%), Gaps = 17/261 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQ+FL D  I+  I ++     G  ++EIG G G +T  LL     ++ V+E D+
Sbjct: 5   PRKRFGQHFLADDAIIDAIVDAIDPQPGEAMVEIGPGLGAMTMPLLER-IERLTVVELDR 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWIS 139
                L+ +       LE+++ D LKVDF      +  P+R++ NLPYNI T +LF+ + 
Sbjct: 64  DLAARLRRVKG-----LEVVEADVLKVDFAALAAAAGRPLRVVGNLPYNISTPILFHLLD 118

Query: 140 ADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           A       E +     + QKEV +R+ A   S  YGRLSV+  WR     + D+ P  F 
Sbjct: 119 A------VEHVVDQHFMLQKEVVDRMAAGPGSKDYGRLSVMLQWRYDIESVLDVPPEAFD 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S ++  +P   P       L ++   AF +RRK LR +L R   E    + G +
Sbjct: 173 PPPRVDSAIVRMLPLPAPEGVDAALLGELVTVAFSQRRKLLRHTLGRW-MEQRGAEVGFD 231

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE + + D+  +   + 
Sbjct: 232 LQRRAEEVPVADYLALARAVA 252


>gi|293399847|ref|ZP_06643993.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306247|gb|EFE47490.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 285

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 144/279 (51%), Gaps = 14/279 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  + +  KK  GQNFL + ++++KIA S+   D   V EIG G G LTQ L    A
Sbjct: 12  KEILETHDLFAKKNYGQNFLTEPSVVEKIARSAIVSDHCVVFEIGPGIGALTQYLCEY-A 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLP 126
           ++V+  E D++   +L D  S++ N + ++  D L +D  ++ N        + I ANLP
Sbjct: 71  KEVVCFEIDERLPHVLADTLSEYTN-VSVVLQDFLTIDLREWVNRYREKGMDVVIAANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +LF    ++       ++T++ QKEV +R  A+ N+  Y  LS++T +R     
Sbjct: 130 YYITTPILFKIFESNAD---IAAITVMMQKEVADRFHAKVNTKEYNALSIITQYRCDVRA 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           +  +  +VF P P V S V+ F    +      ES   + +  F +RRKT+  + +    
Sbjct: 187 VMKVPKNVFHPKPNVDSAVLQFTFRKHYANLKEESFFAMVKACFKQRRKTILNNFQEYCS 246

Query: 247 EN-----LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +       L +A I+   RAE+L++++F  +  ++ D++
Sbjct: 247 DKETAKAYLEKADIDAKRRAESLTLDEFLHLYEVMQDDR 285


>gi|325206459|gb|ADZ01912.1| dimethyladenosine transferase [Neisseria meningitidis M04-240196]
          Length = 259

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF    NI    +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|77919444|ref|YP_357259.1| dimethyladenosine transferase [Pelobacter carbinolicus DSM 2380]
 gi|118600881|sp|Q3A3G8|RSMA_PELCD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|77545527|gb|ABA89089.1| dimethyladenosine transferase [Pelobacter carbinolicus DSM 2380]
          Length = 264

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 139/264 (52%), Gaps = 17/264 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKD 79
           PKK  GQNFL D  ++  I  ++       V+EIG G G LT  LL   AR  VI I++D
Sbjct: 5   PKKRFGQNFLQDRQVVDGIFAAADLQPEDRVLEIGPGLGALTDRLLPEVARLHVIEIDRD 64

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                +   + ++  ++L +   DALK+D+        P ++IANLPYNI ++++F  + 
Sbjct: 65  -----LGAGLQARDEDKLVVHLGDALKLDWTALLT-DPPYKLIANLPYNISSQIVFKILD 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  +  L L+FQ+EVGER+ A   S +YG LSVL         +  + P  F+P P
Sbjct: 119 HRH---LFSRLVLMFQQEVGERLCAGPGSKNYGILSVLCQVWFDIRRVLRVPPGAFYPPP 175

Query: 200 KVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL--KRLGGENL---LHQ 252
           KV S V+ F     P     +    +++ + AF +RRKTLR SL    LG + L   L  
Sbjct: 176 KVHSAVLCFDALAQPRIVVEDQQFFRRVVKAAFAQRRKTLRNSLTGAGLGFDGLEVSLLD 235

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
           AGI+   RAE LS+E+F ++  ++
Sbjct: 236 AGIDPGRRAETLSLEEFGKLAQLI 259


>gi|83025309|gb|ABB95747.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 145/297 (48%), Gaps = 24/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L+  
Sbjct: 4   STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118
           GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +        SP    
Sbjct: 64  GARQVVVIEKDDRFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123

Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173
           IR+++NLP+NI      R + +  + D    +      L FQKEV ERI AQ    +  R
Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRNRSR 183

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232
           LSVL     +A + + +      P+  V   V+  +P   P I      L+K+    F  
Sbjct: 184 LSVLCQNFAQARLKYTLKGGXXVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243

Query: 233 RRKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           ++KT+R+++  L          + LL    I  N  A +L + DF +I     D  D
Sbjct: 244 KQKTVRKTIGHLFPNXNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|222153745|ref|YP_002562922.1| dimethyladenosine transferase [Streptococcus uberis 0140J]
 gi|254807888|sp|B9DVT4|RSMA_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|222114558|emb|CAR43508.1| dimethyladenosine transferase [Streptococcus uberis 0140J]
          Length = 290

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 144/283 (50%), Gaps = 20/283 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  RAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRSVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N +++I  D LK D +    +F N   P++++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLRDFDN-VQVINQDILKSDLQSQIKQFKNPDLPLKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L + I +    PF E   ++ Q+EV +RI+A+ N+  YG LS+   +   A +
Sbjct: 128 YYITTPILMHLIESKI--PFQE-FVVMMQREVADRISAEPNTKAYGSLSIAVQYYMTAKV 184

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P+P V S ++  +    P+    +     ++ +  F  RRKTL  +L   
Sbjct: 185 AFIVPKTVFVPAPNVDSAILKMVRRPEPLIEVTDEDFFFRVAKVGFIHRRKTLWNNLTSH 244

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            G+           L  A I+ ++R E L+I  + ++ + L +
Sbjct: 245 FGKTEEIKTKLTQALELADIKPSIRGEALTIPQYGKLADALKE 287


>gi|304388007|ref|ZP_07370178.1| dimethyladenosine transferase [Neisseria meningitidis ATCC 13091]
 gi|304337955|gb|EFM04094.1| dimethyladenosine transferase [Neisseria meningitidis ATCC 13091]
 gi|325127795|gb|EGC50703.1| dimethyladenosine transferase [Neisseria meningitidis N1568]
          Length = 259

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF    NI    +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|78189160|ref|YP_379498.1| dimethyladenosine transferase [Chlorobium chlorochromatii CaD3]
 gi|119365013|sp|Q3ARC0|RSMA_CHLCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78171359|gb|ABB28455.1| dimethyladenosine transferase [Chlorobium chlorochromatii CaD3]
          Length = 263

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 138/262 (52%), Gaps = 12/262 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H ++  KK +GQNFL D NI +K    SG+     V+EIG G G LT+ L+      + V
Sbjct: 8   HTQVAAKKKLGQNFLTDRNITRKTVLLSGAKPDDQVVEIGPGFGALTRELVE-ECHNLTV 66

Query: 76  IEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           IEKD    P L   I +++P ++++I+ D L ++F        P++I+ N+PY+I + +L
Sbjct: 67  IEKD----PTLATFIRNEYP-QIKVIEGDVLTINFSAMAQAGKPLQILGNIPYSITSPIL 121

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +        + S TL+ Q EV  R+ A+  +  YG L+V      K   +F +S  V
Sbjct: 122 FHLLEHRRA---FRSATLMMQHEVALRLAAKPATKEYGILAVQMQAFCKVEYLFKVSRKV 178

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P PKV S VI   PH        +  ++  + AF +RRKTL  +LK      L+    
Sbjct: 179 FKPQPKVESAVIKLTPHATDPALDADGFRRFVRIAFHQRRKTLLNNLKESYNLELVDSNK 238

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           ++  LRAE LSIE+   + +++
Sbjct: 239 LQ--LRAEALSIEELLELFSLI 258


>gi|311104078|ref|YP_003976931.1| dimethyladenosine transferase [Achromobacter xylosoxidans A8]
 gi|310758767|gb|ADP14216.1| dimethyladenosine transferase [Achromobacter xylosoxidans A8]
          Length = 263

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 130/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D ++++ I  +       TV+EIG G   LT+ LL      +  +E D+ 
Sbjct: 7   RKRFGQNFLTDESVVESIVRAVSPARDDTVVEIGPGLSALTRPLLE-RLDHLTAVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+       +RL +++ DAL VDF +F      +R++ NLPYNI + LLF+ +   
Sbjct: 66  LAARLR--KQFDASRLTVVEADALTVDFSQF---GPALRVVGNLPYNISSPLLFHLM--- 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           TW         + Q+EV +R+ AQ  S  + RLSV+   R +   +FD+ P  F P PKV
Sbjct: 118 TWAGHVRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDPPPKV 177

Query: 202 TSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            S ++  +P     L P+     + + +   AF +RRK LR+ L     +       I  
Sbjct: 178 VSAIVRMVPLPADRLRPV--SERAFETVVARAFSQRRKMLRRVLADWAAQVPWEALDIAP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE++S++ + R+ + L 
Sbjct: 236 TARAEDISVDRYIRLADALV 255


>gi|188591258|ref|YP_001795858.1| dimethyladenosine transferase [Cupriavidus taiwanensis LMG 19424]
 gi|226729776|sp|B2AH89|RSMA_CUPTR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|170938152|emb|CAP63138.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           (kasugamycin resistance) [Cupriavidus taiwanensis LMG
           19424]
          Length = 277

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 133/276 (48%), Gaps = 24/276 (8%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVI 74
           H   + +K  GQNFL+D  I+  I  +     G  ++EIG G G LT  LL  +   +V+
Sbjct: 6   HQGHVARKRFGQNFLVDDTIIHGIVNAISPQAGDVLVEIGPGLGALTDPLLERIPQMQVV 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +++D     +++ +  ++  RL++   DAL  DF+K      P+RI+ NLPYNI + LL
Sbjct: 66  ELDRD-----LVERLRRRYGERLQVHAGDALDFDFDKLAVPGRPLRIVGNLPYNISSPLL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +    +         + QKEV ER+ A+  S  +GRLS++   R     + D+ P  
Sbjct: 121 FHLME---FADHVHDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHVLDVPPGA 177

Query: 195 FFPSPKVTSTVIHFI------------PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           F P PKV S V+  I            PH +   C +  L  +   AF +RRK LR +L 
Sbjct: 178 FNPPPKVDSAVVRMIPWPRHGDGRLRSPHAD---CDITVLGDVVTAAFSQRRKVLRNTLS 234

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L  +      G +   RAE + + ++  +   L D
Sbjct: 235 FLRDQVDFDAMGFDLGRRAEEVPVGEYVELARRLGD 270


>gi|120602408|ref|YP_966808.1| dimethyladenosine transferase [Desulfovibrio vulgaris DP4]
 gi|166221661|sp|A1VD65|RSMA_DESVV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120562637|gb|ABM28381.1| dimethyladenosine transferase [Desulfovibrio vulgaris DP4]
          Length = 266

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 20/258 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL D NI  +IA          VIEIG GPG LT+ +   G  ++ ++EKD  
Sbjct: 6   KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHH 65

Query: 82  F------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +       P+     +Q      ++  DAL   +E+  + + P ++I NLPYN+ + L++
Sbjct: 66  WAREHHLHPLAGTPEAQ------VVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMW 118

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +  S     P     + + QKEVGERI A   S  YG LSV     TK    F + PHVF
Sbjct: 119 DICSRA---PGLVRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVF 175

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGE--NLLH 251
            P PKV S V+ F P  + P     + L  + +  F +RRK L+  L+  +GG+   LL 
Sbjct: 176 TPRPKVDSAVLAFTPRTDRPDAVQSKRLAHVLRLCFQQRRKQLQGILRPHVGGDASALLA 235

Query: 252 QAGIETNLRAENLSIEDF 269
           + GI+   R E LS E F
Sbjct: 236 ELGIDPAARPETLSPERF 253


>gi|297587466|ref|ZP_06946110.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516]
 gi|297574155|gb|EFH92875.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516]
          Length = 283

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 18/279 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K IL  +     K +GQNFL+D N+++ I + S   +   VIEIG G G LT+ L+   
Sbjct: 11  IKEILDKFGFKFSKALGQNFLIDGNLIENIIDFSDITEDDYVIEIGPGFGTLTERLVD-K 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            + +  IE D +   +LK       N  +II +D LKVD  +  + +   +++ANLPY I
Sbjct: 70  CKFLYSIEIDSRLMDVLKYTVGDRDN-FQIINEDVLKVDLNELNHGAKKFKVVANLPYYI 128

Query: 130 GTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
            T +   LFN+          ES+T++ QKEV  R+ A   S  Y  LS+     + A +
Sbjct: 129 TTPIIEHLFNY------RDIIESITVMIQKEVANRMVADVGSKDYASLSLFVKQNSDAKI 182

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS------ 240
           + +    VF P PKV S V++            E L+++ +  F KRRKT+  S      
Sbjct: 183 ILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTIVNSFTSGFV 242

Query: 241 -LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            + +   + +L + G++ NLRAENLS+ED+  I   L +
Sbjct: 243 NVDKDKLKAILQELGLKENLRAENLSLEDYKNIVKKLNN 281


>gi|317402409|gb|EFV82981.1| dimethyladenosine transferase [Achromobacter xylosoxidans C54]
          Length = 263

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 15/261 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D ++++ I  +     G TV+EIG G   LT+ LL      +  +E D+ 
Sbjct: 7   RKRFGQNFLTDESVVESIVRAVNPARGDTVVEIGPGLSALTRPLLE-RLDHLTAVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+    +   RL +++ DAL VDF +F    + +R++ NLPYNI + LLF+ ++  
Sbjct: 66  LAARLRKQFEE--GRLTVVEADALTVDFSQF---GAGLRVVGNLPYNISSPLLFHLMA-- 118

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            W         + Q+EV +R+ AQ  S  + RLSV+   R +   +FD+ P  F P PKV
Sbjct: 119 -WADHVRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDPPPKV 177

Query: 202 TSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            S ++  +P     L P+     + + +   AF +RRK LR+ L     +       I  
Sbjct: 178 VSAIVRMVPLPAERLRPVSA--RAFETVVARAFSQRRKMLRRVLADWAPQVPWEALDIAP 235

Query: 258 NLRAENLSIEDFCRITNILTD 278
             RAE++S++ +  +++ L +
Sbjct: 236 TARAEDISVDRYIHLSDALVE 256


>gi|254447589|ref|ZP_05061055.1| dimethyladenosine transferase [gamma proteobacterium HTCC5015]
 gi|198262932|gb|EDY87211.1| dimethyladenosine transferase [gamma proteobacterium HTCC5015]
          Length = 226

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           +EIG G G LT   L      +  +E D+   P L+ +   H  RL I + DALK DF  
Sbjct: 1   MEIGPGLGALTAPALE-RVEHMDAVELDRDLIPKLQTLD--HAERLTIHECDALKFDFAA 57

Query: 112 FFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              +   P+R+I NLPYNI + L+F+ +         + +  + QKEV ER+ A   +  
Sbjct: 58  LGKLRDKPLRVIGNLPYNISSPLIFHLLHNAEC---IQDMHFMLQKEVVERLAASPGTGD 114

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLES-LKKITQE 228
           YGRLSV    + +   +F + P  F P+PKV S ++   P   P+ P  L+  L+ + + 
Sbjct: 115 YGRLSVAVQAQCRVRYLFTVPPGCFTPAPKVDSAIVRLEPLDEPLCPKALQGPLEDLLRT 174

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           AF +RRKTLR +LK L     +   GI+ +LR E L +EDF R+   LT
Sbjct: 175 AFHQRRKTLRNNLKGLLSSEAIEACGIDPSLRPERLCVEDFVRLVKALT 223


>gi|83025299|gb|ABB95742.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 149/297 (50%), Gaps = 24/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L+  
Sbjct: 4   STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118
           GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +        SP    
Sbjct: 64  GARQVLVIEKDARFLNPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123

Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWESLTLL-FQKEVGERITAQKNSPHYGR 173
           IR+++NLP+NI      R + +  + D    +     +L FQKEV ERI A+    +  R
Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIARPGDRNRSR 183

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232
           LSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    F  
Sbjct: 184 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243

Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 244 KQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|25141369|ref|NP_491242.2| hypothetical protein T03F1.7 [Caenorhabditis elegans]
 gi|74961647|sp|P91424|TFB1M_CAEEL RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|20451250|gb|AAB42235.2| Hypothetical protein T03F1.7 [Caenorhabditis elegans]
          Length = 367

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 145/289 (50%), Gaps = 28/289 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +L+  +  Y++  KK + QN+L+D+NI +KIA+ +  ++   VIEIG GPG +T+ +L  
Sbjct: 12  ALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGITRAILEA 71

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----------- 117
           GA ++ V+E D +F P L+ ++    +R+ I   DAL+ +    +   +           
Sbjct: 72  GASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKNETARPESVDWHDS 131

Query: 118 ---PIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSP 169
               + +I NLP+NI + L+  ++         W      LTL FQ EV +R+ +     
Sbjct: 132 NLPAMHVIGNLPFNIASPLIIKYLRDMSYRRGVWQYGRVPLTLTFQLEVAKRLCSPIACD 191

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228
              R+S+++ +  +  M+F IS   F P P+V   V+ F+P   P +    E L+K+ ++
Sbjct: 192 TRSRISIMSQYVAEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVNTSFEVLEKVCRQ 251

Query: 229 AFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDF 269
            F  R+K + + LK L  E        +LL +  I+    +  L IE F
Sbjct: 252 VFHYRQKYVTKGLKTLYPEELEDELSDDLLKKCRIDPTTTSIRLGIEQF 300


>gi|160914684|ref|ZP_02076898.1| hypothetical protein EUBDOL_00691 [Eubacterium dolichum DSM 3991]
 gi|158433224|gb|EDP11513.1| hypothetical protein EUBDOL_00691 [Eubacterium dolichum DSM 3991]
          Length = 285

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 141/277 (50%), Gaps = 14/277 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL+ + +  KK  GQNFL++ ++++KIA S+         EIG G G LTQ L    A
Sbjct: 12  KEILAKHDVFAKKNYGQNFLIEPSVVEKIARSAIGEKKCVAFEIGPGIGALTQYLCEY-A 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           +KV+  E D++   +LKD   ++ N  EI+  D L +D     EK+      + + ANLP
Sbjct: 71  QKVVSFEIDERLPEVLKDTLQEYDN-FEIVLQDFLTIDLNAWVEKYRQEGYEVVVAANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +LF    A+       S+T++ QKEV +R  A+ N+  Y  LSV+T +R + + 
Sbjct: 130 YYITTPILFKIFEAEAN---ISSITVMMQKEVADRFYAKVNTKDYNALSVITQYRCEVSP 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL----- 241
           +  +  +VF P P V S V+ F           E   ++ +  F +RRKT+  +      
Sbjct: 187 VMKVPKNVFMPKPNVDSAVLQFRFKQRNENIEEEVFFEMVKACFKQRRKTMLNNFGEYLQ 246

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            +     LL QA I+   R E++S+ +F  +  ++ +
Sbjct: 247 DKAKAMALLEQANIDPKRRGESVSLAEFLVLYEVMRN 283


>gi|313893343|ref|ZP_07826917.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442112|gb|EFR60530.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 284

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ +I  ++    G  V+E+G G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGA-D 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   +L    + + N + I+  D LK+D     N   P +++ANLPY I T 
Sbjct: 74  VTAIELDRRLLEVLDTTLASYDN-VRIVHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + + +    P  E L ++ QKEV  R+ A+  +  YG LSV   + T+  ++ D+ P
Sbjct: 132 IIMSLLESKL--PI-ERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246
             F P+P VTS+VI  +     P+    E L  ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLSKDR 248

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274
            E LL +A I+   R E  ++++F  + N
Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277


>gi|238019586|ref|ZP_04600012.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748]
 gi|237863784|gb|EEP65074.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748]
          Length = 284

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ +I  ++    G  V+E+G G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGA-D 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   +L    + + N + I+  D LK+D     N   P +++ANLPY I T 
Sbjct: 74  VTAIELDRRLLEVLDTTLASYDN-VRIVHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + + +    P  E L ++ QKEV  R+ A+  +  YG LSV   + T+  ++ D+ P
Sbjct: 132 IIMSLLESKL--PI-ERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246
             F P+P VTS+VI  +     P+    E L  ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFANTMKTTGLSKDR 248

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274
            E LL +A I+   R E  ++++F  + N
Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277


>gi|261377894|ref|ZP_05982467.1| dimethyladenosine transferase [Neisseria cinerea ATCC 14685]
 gi|269145748|gb|EEZ72166.1| dimethyladenosine transferase [Neisseria cinerea ATCC 14685]
          Length = 261

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 133/264 (50%), Gaps = 15/264 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ VIE D+ 
Sbjct: 7   RKRFGQNFLQDTRIINDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVATPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILTDNQD 281
             RAE+++ E +  ++N LT   D
Sbjct: 236 QDRAEHVAPEKYVALSNYLTGKAD 259


>gi|241888685|ref|ZP_04775992.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379]
 gi|241864708|gb|EER69083.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379]
          Length = 286

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 135/268 (50%), Gaps = 16/268 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  +    KK +GQNFL+D NIL +I + +G    + VIEIG G G+LT+ L    A+K
Sbjct: 11  ILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNGNVGVIEIGPGIGSLTEALAK-KAKK 69

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPYN 128
           VI  E D +  PIL +  + +PN +EII +D LKVD +K      +    I ++ANLPY 
Sbjct: 70  VISFEIDGRLLPILSETLADYPN-VEIINNDILKVDVDKIIAEKMSDCEKIMVVANLPYY 128

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L + I         +   ++ QKEV  R+ A+  +  Y  L++L  + T    +F
Sbjct: 129 ITTPILTHLIENTEK---IDGYVVMMQKEVANRLNAKVGTKDYNSLTILLNYYTNVEYLF 185

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------- 241
            +   VF P+P V S V+  +              K  +  F +RRKTL  +L       
Sbjct: 186 TVPKKVFVPAPNVESAVVKIMTKETREFETDAKFFKFVRSCFVQRRKTLLNNLISSYGKD 245

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDF 269
           K+   +N    + IE   R+E LS+ +F
Sbjct: 246 KKQDLQNACVDSDIEPGRRSETLSLVEF 273


>gi|84490322|ref|YP_448554.1| dimethyladenosine transferase [Methanosphaera stadtmanae DSM 3091]
 gi|119365032|sp|Q2NE42|RSMA_METST RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|84373641|gb|ABC57911.1| KsgA [Methanosphaera stadtmanae DSM 3091]
          Length = 271

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 129/238 (54%), Gaps = 15/238 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y I       QN+L+D N L  I E++   D  T++EIGAG G LT + +   A
Sbjct: 5   KEILEKYNIKLDTNKSQNYLIDDNKLNIILENADIQDNETILEIGAGIGTLT-LPMAKKA 63

Query: 71  RKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +KVI IEKD     ILK  I  +    +EII+DDALKVDF KF       ++++NLPY I
Sbjct: 64  KKVIAIEKDPIIVDILKQQIIKEKLTNIEIIKDDALKVDFPKFD------KVVSNLPYQI 117

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F  +      PF +++ L++Q E  +R+ A+ ++  Y RLSV   +R    ++  
Sbjct: 118 SSPVTFKLLEY----PFKKAI-LMYQLEFAKRMQAKPDTHEYSRLSVALSYRADTKIIDT 172

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLG 245
           + P  F P PK+ S VI  IP  N PI   L+ +++ + Q    K +K L QS   LG
Sbjct: 173 LPPEAFIPKPKIKSAVIELIPKNNKPIDKLLDNTIRALFQHRNKKAKKALIQSAHELG 230


>gi|118580905|ref|YP_902155.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379]
 gi|118503615|gb|ABL00098.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379]
          Length = 271

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 134/266 (50%), Gaps = 14/266 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P K +GQNFL+D NI+++I   +       V+E+G G G LT  L    AR ++++E D 
Sbjct: 7   PLKSLGQNFLVDRNIVERIIRGAALEPDDQVLEVGPGRGALTAHLSERVAR-LLLVEYDH 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS 139
                L +   ++  R+ +I  D L VD E          +++ANLPYNI T++LF ++ 
Sbjct: 66  ALADELSERYREN-QRVRVIDGDILAVDLEALLEDGDKRWKVVANLPYNISTQVLFRFLE 124

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             +       + L+ QKEVG+R+TA  +   YG  +V+ G        F + P  F P P
Sbjct: 125 LRSR---LSRMLLMLQKEVGDRLTALPDCSDYGVTTVILGLWFDIRREFVVPPGCFHPRP 181

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL------GGENLLH 251
           +V S V+ F P   P       E  +++ + AF  RRKTL   LKR       G   LL 
Sbjct: 182 RVDSVVLSFTPLDAPRAQVGDEEIFRRVVKCAFATRRKTLFNCLKRGELVAPDGVAELLE 241

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
             GI+   R E LS+E+F R++  L+
Sbjct: 242 SCGIDGRRRGETLSLEEFARLSRHLS 267


>gi|62184932|ref|YP_219717.1| dimethyladenosine transferase [Chlamydophila abortus S26/3]
 gi|81312896|sp|Q5L6H5|RSMA_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62147999|emb|CAH63750.1| dimethyladenosine transferase [Chlamydophila abortus S26/3]
          Length = 278

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 140/266 (52%), Gaps = 19/266 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK + QNFL+D NIL+KI   S    G  V+EIG G G LT++L+  GA  V+ +EKD 
Sbjct: 20  PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAH-VVALEKDS 78

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFN-W 137
               +L++   Q P  LEI   DA K    +  +       R++ANLPY+I T LL   +
Sbjct: 79  ----MLEETLKQLPIHLEIT--DACKYPLSQLQDQGWQGKGRVVANLPYHITTPLLRKLF 132

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           + A   P  W+++T++ Q EV  RITAQ     YG L++   +       F +SP  F P
Sbjct: 133 LEA---PNQWKTVTVMIQDEVARRITAQPGGKEYGSLTIFLQFFVDVHYAFKVSPGCFLP 189

Query: 198 SPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGE----NLLH 251
            P+V S V+H     N P+   L +    +T+ AFG+RRK L  +LK L  +      L 
Sbjct: 190 KPQVASAVVHMTVKENFPLEEPLRTKFFSLTRAAFGQRRKLLANALKDLYPKERVFEALS 249

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
           Q       R E LS++D+ ++  +L+
Sbjct: 250 QLHFSDKTRPETLSLDDYLKLFYLLS 275


>gi|294786234|ref|ZP_06751488.1| dimethyladenosine transferase [Parascardovia denticolens F0305]
 gi|315225768|ref|ZP_07867556.1| dimethyladenosine transferase [Parascardovia denticolens DSM 10105]
 gi|294485067|gb|EFG32701.1| dimethyladenosine transferase [Parascardovia denticolens F0305]
 gi|315119900|gb|EFT83032.1| dimethyladenosine transferase [Parascardovia denticolens DSM 10105]
          Length = 291

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 145/279 (51%), Gaps = 15/279 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++IA          VIE+G G G+LT  LL
Sbjct: 14  AADIRRIAASTGINPTKRFGQNFVVDPGTVRRIARLGDLGPDSRVIEVGPGLGSLTLALL 73

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHP---NRLEIIQDDALKVDFEKFFNI-SSPI-- 119
             GA +V+ +E D +   +L   + +Q P   +R  +I++DAL++  ++   I  SP+  
Sbjct: 74  ETGA-QVLAVEIDPRLADLLPSTVRAQMPQAMSRFHLIREDALQLGLDQVEEIFGSPLPQ 132

Query: 120 -RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
             +++NLPYN+ T ++   +      P   S T++ QKEV +R+TAQ  S  YG  SV  
Sbjct: 133 LTLMSNLPYNVATPIILTLLERF---PSLASFTVMVQKEVADRLTAQPGSKIYGVPSVKL 189

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRK 235
            W  +A     +   VF+P+P V S ++ F  +     P     E    +   AF +RRK
Sbjct: 190 AWYGQAKPAGIVGASVFWPAPHVDSALVAFTRYDQGQGPRTDLRERTFTLVDAAFSQRRK 249

Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           TL  +LK++       +AGI+   R E L++E+F R+ +
Sbjct: 250 TLHAALKKMVPTAAFEKAGIDPTRRGETLTMEEFTRLAS 288


>gi|198466094|ref|XP_001353894.2| GA20255 [Drosophila pseudoobscura pseudoobscura]
 gi|224471856|sp|Q2LZ79|TFB1M_DROPS RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|198150443|gb|EAL29629.2| GA20255 [Drosophila pseudoobscura pseudoobscura]
          Length = 337

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 152/291 (52%), Gaps = 23/291 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67
           +++ ++  YK+   K + QNFL+D  +  KI +S+G +D    V+E+G GPG +T+ +L 
Sbjct: 20  TIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRSILR 79

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
              +++I++EKD++F     +L++ +S    +++I  DD L+ + E+   + +  I +I 
Sbjct: 80  RQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDTTQRIHLIG 139

Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           NLP++I TRLL NW +  A     F  +   +TL FQKEV ERI A   S    RLSV++
Sbjct: 140 NLPFSISTRLLINWYADLAARRGAFRRNDTCMTLTFQKEVAERICAPVGSEQRCRLSVMS 199

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235
              T+  M F I    F P P+V   V+  IP   P   +P  L  ++++ +  F  R+K
Sbjct: 200 QIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFSL--VERVVRHIFSMRQK 257

Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             R+    L          + L  +A +   LR+  LS+    R+ +   +
Sbjct: 258 YCRRGYGTLLPPDSREETTQTLFQRADVRDTLRSFELSVPQCLRLADAYAE 308


>gi|86134822|ref|ZP_01053404.1| ribosomal RNA adenine dimethylase [Polaribacter sp. MED152]
 gi|85821685|gb|EAQ42832.1| ribosomal RNA adenine dimethylase [Polaribacter sp. MED152]
          Length = 267

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/266 (35%), Positives = 139/266 (52%), Gaps = 14/266 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL D +I K IA++        V+EIG G G LT+ LL     K  V+E D++
Sbjct: 6   KKHLGQHFLTDESIAKDIADALTEEGYNHVLEIGPGMGVLTKYLLQ-KKPKTTVLELDRE 64

Query: 82  FFPILKDISS-QHPN------RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
               LK++   +H N        +II+ D LK D +  FN    + II N PYNI T+++
Sbjct: 65  SVSYLKEVFPIEHLNLNTTSDNFQIIEGDFLKKDLQTLFN-KEQVAIIGNFPYNISTQIV 123

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I    + P +  +   FQKEV +RI  ++ S  YG LSVLT        +F + P V
Sbjct: 124 FKAIENREFVPEFAGM---FQKEVAKRIAEKEGSKVYGILSVLTQAFFDVEYLFTVPPTV 180

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F P PKV S VI  I   +  +P   +   ++ + AF +RRK LR SLK     + L + 
Sbjct: 181 FNPPPKVDSGVIRLIRKKDYSLPVDEKLFFRVVKTAFNQRRKMLRSSLKSFKLSDSLKED 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
            I    R E LS+++F  +T  + +N
Sbjct: 241 PIFAR-RPEQLSVQEFISLTQKIANN 265


>gi|187927497|ref|YP_001897984.1| dimethyladenosine transferase [Ralstonia pickettii 12J]
 gi|309779801|ref|ZP_07674556.1| dimethyladenosine transferase [Ralstonia sp. 5_7_47FAA]
 gi|187724387|gb|ACD25552.1| dimethyladenosine transferase [Ralstonia pickettii 12J]
 gi|308921378|gb|EFP67020.1| dimethyladenosine transferase [Ralstonia sp. 5_7_47FAA]
          Length = 281

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+    R + V+E D+ 
Sbjct: 15  RKRFGQNFLVDDGVIHAIVAAIDPKPDDVLVEIGPGLGALTVPLMER-VRTLQVVELDRD 73

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              ++  +  +  +RL +   DAL  DF        P+RI+ NLPYNI + LLF+     
Sbjct: 74  ---LVARLQQRFGDRLIVHAGDALAFDFGSLQEAGRPLRIVGNLPYNISSPLLFHLA--- 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           T+         + QKEV +R+ A   S  + RLSV+   R    ++ D+ P  F P PKV
Sbjct: 128 TFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSFNPPPKV 187

Query: 202 TSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            S V+  IP     +P  P  L +L  +   AF +RRK LR +L  L         G + 
Sbjct: 188 DSAVVRMIPWPADKSPYAPVDLRALGTVVTMAFSQRRKVLRNTLGALRDVIDFEALGFDL 247

Query: 258 NLRAENLSIEDFCRITNILTDNQ 280
             RAE +S+EDF  + N L  N+
Sbjct: 248 GRRAEEVSVEDFVAVANALPANR 270


>gi|294793453|ref|ZP_06758590.1| dimethyladenosine transferase [Veillonella sp. 3_1_44]
 gi|294455023|gb|EFG23395.1| dimethyladenosine transferase [Veillonella sp. 3_1_44]
          Length = 284

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ +I  ++    G  V+E+G G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGA-D 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   +L    + + N + II  D LK+D     N   P +++ANLPY I T 
Sbjct: 74  VTAIELDRRLLEVLDTTLASYDN-VRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + + +    P  E L ++ QKEV  R+ A+  +  YG LSV   + T+  ++ D+ P
Sbjct: 132 IIMSLLESKL--PI-ERLVVMVQKEVALRMIAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246
             F P+P VTS+VI  +     P+    E L  ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274
            E LL +A I+   R E  ++++F  + N
Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVAN 277


>gi|32490769|ref|NP_871023.1| hypothetical protein WGLp020 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340186|sp|Q8D3I1|RSMA_WIGBR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|25165975|dbj|BAC24166.1| ksgA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 261

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/257 (36%), Positives = 143/257 (55%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P K +GQNFL D  I+KKI           +IEIG G G LT + ++  ++ +  IE D+
Sbjct: 4   PIKKLGQNFLKDKKIIKKIINFINPKYKDKIIEIGPGLGALT-IPISKISKSITAIEIDK 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139
                  + +    N L II  D +K++ +KFF+    P+RI  +LPYNI   L+FN+I 
Sbjct: 63  NLV-YFLNKNKNIKNNLNIINIDIMKLNLKKFFSSFCDPVRIFGSLPYNISVSLMFNFI- 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            + +    + +  + QKEV +RI A+ N+ HYG +SV+  +      + DIS   F P P
Sbjct: 121 -ENYNKIID-MHFVIQKEVAQRILARPNNKHYGYISVIMQYYFYVEKLIDISNCAFKPIP 178

Query: 200 KVTSTVIHFIPH-LNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S++I   PH + P P C ++ +K + + AF +RRK L+ SLK+      +    I  
Sbjct: 179 KVQSSLIRMRPHKVCPFPFCDIDKMKVLLKSAFNQRRKMLKNSLKKYFSVEQIILYKINP 238

Query: 258 NLRAENLSIEDFCRITN 274
            LRAENLSIE++C ++N
Sbjct: 239 KLRAENLSIENYCNLSN 255


>gi|315924856|ref|ZP_07921073.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621755|gb|EFV01719.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 295

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 137/280 (48%), Gaps = 16/280 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ ++  +++   K  GQNFL+D +IL KIA +       TVIEIG G G LT+ L +  
Sbjct: 9   VEALMQRHELHFNKRFGQNFLIDDHILDKIARAGDLTPTDTVIEIGPGIGTLTREL-SAR 67

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANL 125
           A +VI +E D +  P L +  +   N + ++  D LK D       ++P    ++++ANL
Sbjct: 68  AGQVIAVEIDHKLIPALGETLADCGN-VHVVNADVLKTDLAALVAEAAPGTARLKVVANL 126

Query: 126 PYNIGTRLLFNWISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           PY I T ++   +    WP       +  L Q+EVGERI A      YG LS+   +  +
Sbjct: 127 PYYITTPIMMQLLET-RWPDGVALAQMVFLVQREVGERICAAPGGKIYGSLSIACQYYAR 185

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSL- 241
             + F +   VF P PKV S VI       P  P   +   ++ + AF  RRKTL  SL 
Sbjct: 186 PEIAFAVPATVFMPRPKVDSVVIAMKKATPPYAPSDPDQFFRVVKAAFMNRRKTLINSLT 245

Query: 242 --KRLGGENLL---HQAGIETNLRAENLSIEDFCRITNIL 276
                  + LL    +AGI+  +RAE L    FC + N L
Sbjct: 246 TNTAYTKDQLLAAMAEAGIDPKVRAEKLDGTGFCALANAL 285


>gi|62900547|sp|Q72B41|RSMA_DESVH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|46449624|gb|AAS96274.1| dimethyladenosine transferase [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 266

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 20/258 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL D NI  +IA          VIEIG GPG LT+ +   G  ++ ++EKD  
Sbjct: 6   KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHH 65

Query: 82  F------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +       P+     +Q      ++  DAL   +E+  + + P ++I NLPYN+ + L++
Sbjct: 66  WAREHRLHPLAGTPEAQ------VVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMW 118

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +  S     P     + + QKEVGERI A   S  YG LSV     TK    F + PHVF
Sbjct: 119 DICSRA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVF 175

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGE--NLLH 251
            P PKV S V+ F P  + P     + L ++ +  F +RRK L+  L+  +GG+   LL 
Sbjct: 176 TPRPKVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLA 235

Query: 252 QAGIETNLRAENLSIEDF 269
             GI+   R E LS E F
Sbjct: 236 GLGIDPAARPETLSPERF 253


>gi|326692423|ref|ZP_08229428.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Leuconostoc argentinum KCTC 3773]
          Length = 295

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 142/276 (51%), Gaps = 19/276 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ Y +  KK  GQNFL DL++L  I E++       VIEIG G G LT+ L    A
Sbjct: 14  QAILTQYGLHAKKKFGQNFLTDLSVLHGIVETAEITADDYVIEIGPGIGALTEQL-ARRA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           ++V+  E D Q   +L +    + N + +++ D LKVD  +     F + + ++++ANLP
Sbjct: 73  KRVLAFEIDPQMVAVLAETLQPYDN-VTVVEQDILKVDLAQMIATEFGVGARVKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L   + ++     W+++ ++ Q+EV +R+ A   +  YG L++   +  +AT+
Sbjct: 132 YYITTPILMQLLRSNIA---WDNIVVMMQREVADRLNAAVGTKAYGVLTLTVAYFAQATL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLG 245
             ++    F PSP V S V+   PH   I     E L  + + +F  RRK+L  ++ +  
Sbjct: 189 AINVPATSFNPSPNVDSAVVKLTPHTPEIVVDQPERLFGVIKRSFSHRRKSLWNNMIQTY 248

Query: 246 GEN---------LLHQAGIETNLRAENLSIEDFCRI 272
           G++          L    I  ++RAE L +  F ++
Sbjct: 249 GKDAETKEKITAALAATDIAPSIRAERLDLTQFTQL 284


>gi|297572123|ref|YP_003697897.1| dimethyladenosine transferase [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932470|gb|ADH93278.1| dimethyladenosine transferase [Arcanobacterium haemolyticum DSM
           20595]
          Length = 301

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 33/289 (11%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + + + I P K +GQNF+ D   +++I   +G   G  V+E+G G G+LT  +L  G
Sbjct: 14  IRELAATFGIRPTKTLGQNFVHDAGTVRRIVRDAGVQAGDHVVEVGPGLGSLTLAILETG 73

Query: 70  ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKV----------------DF 109
           A  +  IE D      L     ++  +   R  +   DA+++                D 
Sbjct: 74  A-VLSAIEIDPPLADALPGTIAEVQPESSERFAVTNRDAMEIHSVADLAVPRVVGEGGDS 132

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
            +F    +P  ++ANLPYN+   +L   + +    P  E++T++ Q EV +R+ A+  S 
Sbjct: 133 AEF----TPKHLVANLPYNVAVPVLLTLLESL---PTLETVTVMVQLEVADRLAAEPGSK 185

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229
            YG  SV   W         IS +VF+P P V S ++H   H  P     E++  +   A
Sbjct: 186 VYGVPSVKANWYADVWRGAKISRNVFWPVPNVDSALVHMRRHPEPESVDREAVFGVVDAA 245

Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           F +RRKTLR +L    G     E +L  AG++ +LR E L+IE+F  I 
Sbjct: 246 FAQRRKTLRAALGAWAGSPARAEEILRAAGVDPSLRGERLTIENFIAIA 294


>gi|254670514|emb|CBA06283.1| dimethyladenosine transferase [Neisseria meningitidis alpha153]
          Length = 259

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 130/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF    NI    +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE++  E +  ++N L 
Sbjct: 236 QDRAEHIVPEKYVALSNYLA 255


>gi|189500122|ref|YP_001959592.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1]
 gi|226729769|sp|B3EQT0|RSMA_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189495563|gb|ACE04111.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1]
          Length = 262

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 139/255 (54%), Gaps = 13/255 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H +I  KK +GQNFL D NI +KI ES+   +   V+EIG G G LT  +L +  R    
Sbjct: 8   HTEIAVKKKLGQNFLTDQNICRKIVESAQLQENDHVLEIGPGFGALTTAILEVVPR-FTA 66

Query: 76  IEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           +EKD+    IL + I +++P+ + +I+ D LK+D E+  +    +RI+ N+PY+I T +L
Sbjct: 67  VEKDR----ILAEFIRNEYPS-VRVIEMDFLKIDLEELAS-EGRLRIMGNIPYSITTPIL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +  D     + S TL+ Q EV  R+ A   S  YG L+V        T +F ++  V
Sbjct: 121 FKLL--DNRRNIF-SETLMMQHEVARRLVASPGSKEYGILAVQLQTFCDVTYLFKVNRTV 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P+V S V+  IP            +   + +FG+RRKTL  +LK+    +++    
Sbjct: 178 FKPRPEVDSAVVSIIPKTAIFDADETGFRNFVRTSFGQRRKTLHNNLKKYYDLSMV--TS 235

Query: 255 IETNLRAENLSIEDF 269
           I+  LRAE+LS+E F
Sbjct: 236 IDLKLRAESLSVEQF 250


>gi|241662027|ref|YP_002980387.1| dimethyladenosine transferase [Ralstonia pickettii 12D]
 gi|240864054|gb|ACS61715.1| dimethyladenosine transferase [Ralstonia pickettii 12D]
          Length = 281

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+    R + V+E D+ 
Sbjct: 15  RKRFGQNFLVDDGVIHAIVAAIDPKPDDVLVEIGPGLGALTVPLMER-VRTLQVVELDRD 73

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              ++  +  +  +RL +   DAL  DF     +  P+RI+ NLPYNI + LLF+     
Sbjct: 74  ---LVARLQKRFGDRLVVHAGDALAFDFGALQEVDRPLRIVGNLPYNISSPLLFHLA--- 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           T+         + QKEV +R+ A   S  + RLSV+   R    ++ D+ P  F P PKV
Sbjct: 128 TFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSFNPPPKV 187

Query: 202 TSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            S V+  IP     +P  P  + +L  +   AF +RRK LR +L  L         G + 
Sbjct: 188 DSAVVRMIPWPADKSPYAPVDMRALGTVVTMAFSQRRKVLRNTLGALRDVVDFDALGFDL 247

Query: 258 NLRAENLSIEDFCRITNILTDNQ 280
           + RAE + +EDF  + N L  N+
Sbjct: 248 SRRAEEVPVEDFVAVANALPANR 270


>gi|311233807|gb|ADP86661.1| dimethyladenosine transferase [Desulfovibrio vulgaris RCH1]
          Length = 300

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 20/258 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL D NI  +IA          VIEIG GPG LT+ +   G  ++ ++EKD  
Sbjct: 40  KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHH 99

Query: 82  F------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +       P+     +Q      ++  DAL   +E+  + + P ++I NLPYN+ + L++
Sbjct: 100 WAREHRLHPLAGTPEAQ------VVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMW 152

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +  S     P     + + QKEVGERI A   S  YG LSV     TK    F + PHVF
Sbjct: 153 DICSRA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVF 209

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGE--NLLH 251
            P PKV S V+ F P  + P     + L ++ +  F +RRK L+  L+  +GG+   LL 
Sbjct: 210 TPRPKVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLA 269

Query: 252 QAGIETNLRAENLSIEDF 269
             GI+   R E LS E F
Sbjct: 270 GLGIDPAARPETLSPERF 287


>gi|15644188|ref|NP_229237.1| dimethyladenosine transferase [Thermotoga maritima MSB8]
 gi|27151616|sp|Q9X1F1|RSMA_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|4982002|gb|AAD36507.1|AE001795_10 dimethyladenosine transferase [Thermotoga maritima MSB8]
          Length = 279

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/267 (34%), Positives = 140/267 (52%), Gaps = 20/267 (7%)

Query: 4   NNKSHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           + +   LKT   L  Y +  KK++GQ FL D  I K+I +++       V+EIGAG G L
Sbjct: 14  DGEGCDLKTSDYLKKYGVRLKKHLGQVFLSDDRIAKRIVKAAELTPEDVVVEIGAGAGTL 73

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           T+ L   GAR VI  E D+   PIL++  S++PN +E+  +D LK       N+      
Sbjct: 74  TEELAKTGAR-VIAYEIDESLAPILQERLSKYPN-VELRFEDFLKAK-----NVPEGAIC 126

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           ++N+PYNI   L+   I    W   ++   ++ QKEVGERI A+     YG LSV+    
Sbjct: 127 VSNIPYNITGPLMEKIIE---WK--FKRAIVMIQKEVGERILAKPGKKTYGYLSVVVQTF 181

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            +   +FD+S   F P+P+V STV+       P+    E  KK     F K+RKTL+ +L
Sbjct: 182 YEVKKLFDVSRSCFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNL 239

Query: 242 KRLGGENLLHQAGIETNLRAENLSIED 268
           +      L    G++ + RAE L++E+
Sbjct: 240 RPF----LSIFEGVDLSRRAEQLTVEE 262


>gi|329767929|ref|ZP_08259441.1| dimethyladenosine transferase [Gemella haemolysans M341]
 gi|328838592|gb|EGF88195.1| dimethyladenosine transferase [Gemella haemolysans M341]
          Length = 286

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 135/268 (50%), Gaps = 16/268 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  +    KK +GQNFL+D NIL +I + +G  + I VIEIG G G+LT+ L    A+K
Sbjct: 11  ILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNENIGVIEIGPGIGSLTEALAK-KAKK 69

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPYN 128
           VI  E D +  PIL +  + + N +EII +D LKVD +K      +    I ++ANLPY 
Sbjct: 70  VISFEIDGRLLPILSETLADYSN-VEIINNDILKVDVDKIIAEKMSDCEKIMVVANLPYY 128

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L + I         +   ++ QKEV  R+ A+  +  Y  L++L  + T    +F
Sbjct: 129 ITTPILTHLIENTEK---IDGYVVMMQKEVANRLNAKVGTKDYNSLTILLNYYTDVEYLF 185

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------- 241
            +   VF P+P V S V+  +              K  +  F +RRKTL  +L       
Sbjct: 186 TVPKKVFVPAPNVESAVVKIMTKETREFETDAKFFKFVRSCFVQRRKTLLNNLISSYGKD 245

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDF 269
           K+   +N    + IE   R+E LS+ +F
Sbjct: 246 KKQDLQNACVDSDIEPGRRSETLSLAEF 273


>gi|304569709|ref|YP_011015.2| dimethyladenosine transferase [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 291

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 20/258 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL D NI  +IA          VIEIG GPG LT+ +   G  ++ ++EKD  
Sbjct: 31  KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHH 90

Query: 82  F------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +       P+     +Q      ++  DAL   +E+  + + P ++I NLPYN+ + L++
Sbjct: 91  WAREHRLHPLAGTPEAQ------VVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMW 143

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +  S     P     + + QKEVGERI A   S  YG LSV     TK    F + PHVF
Sbjct: 144 DICSRA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVF 200

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGE--NLLH 251
            P PKV S V+ F P  + P     + L ++ +  F +RRK L+  L+  +GG+   LL 
Sbjct: 201 TPRPKVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLA 260

Query: 252 QAGIETNLRAENLSIEDF 269
             GI+   R E LS E F
Sbjct: 261 GLGIDPAARPETLSPERF 278


>gi|255015789|ref|ZP_05287915.1| dimethyladenosine transferase [Bacteroides sp. 2_1_7]
 gi|256841738|ref|ZP_05547244.1| dimethyladenosine transferase [Parabacteroides sp. D13]
 gi|262384068|ref|ZP_06077204.1| dimethyladenosine transferase [Bacteroides sp. 2_1_33B]
 gi|298377078|ref|ZP_06987032.1| dimethyladenosine transferase [Bacteroides sp. 3_1_19]
 gi|256736632|gb|EEU49960.1| dimethyladenosine transferase [Parabacteroides sp. D13]
 gi|262294966|gb|EEY82898.1| dimethyladenosine transferase [Bacteroides sp. 2_1_33B]
 gi|298266062|gb|EFI07721.1| dimethyladenosine transferase [Bacteroides sp. 3_1_19]
          Length = 266

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/265 (36%), Positives = 131/265 (49%), Gaps = 23/265 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL I ++IA++  +   + V+EIG G G LTQ LL  G   + V+E 
Sbjct: 4   VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62

Query: 79  D-------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D        Q FP LK           II +D LK+D  K F       +I N PYNI +
Sbjct: 63  DMESVDYLNQNFPDLKG---------RIIAEDFLKLDLSKLF--PGQFCVIGNYPYNISS 111

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           ++ F  +      P       + QKEV ER+ A   S  YG LSVL         +F +S
Sbjct: 112 QIFFKVLDYKDQIPCCSG---MLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVS 168

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLL 250
             VF P PKV S V+    +      C E L K + + +F +RRKTLR S+K L G++  
Sbjct: 169 EKVFDPPPKVKSAVLKMTRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCP 228

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             A    + R E LS+E F  +T I
Sbjct: 229 DYALPIFDKRPEQLSVEQFVELTLI 253


>gi|206891185|ref|YP_002249355.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206743123|gb|ACI22180.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 263

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 139/256 (54%), Gaps = 14/256 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+FL +  IL+KI + S       V+EIGAG G+LT++LL   A++VI IE D   + 
Sbjct: 12  LGQHFLRNAEILEKIVKVSEINSNDKVVEIGAGMGDLTEILLK-NAKEVIAIEIDPVLYK 70

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           ILK+      N L +I ++ALK  +E+        +++AN+PY I   ++F  +      
Sbjct: 71  ILKERFYGKEN-LVLINENALKFPYEEI----GQFKVVANIPYYITKPIIFKLLKLKNLI 125

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
               S+TL  QKEV ER+ A+ ++  Y  LS++  + T+A + F I    F P P+V S 
Sbjct: 126 ----SMTLTIQKEVAERLAAKPSTKAYSALSIIAQYYTQAEIKFYIPASFFNPPPEVESA 181

Query: 205 VIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLR 260
           VI       +P+    E L  KI + AFG+RRK +  SLK +  E    L + GI    R
Sbjct: 182 VIKMDRRDKSPVEVIDEKLFFKIIKSAFGQRRKMISNSLKSIIDEPKEFLIKIGINPIKR 241

Query: 261 AENLSIEDFCRITNIL 276
            E LSIEDF  I+N L
Sbjct: 242 PEELSIEDFAFISNEL 257


>gi|194869297|ref|XP_001972426.1| GG15524 [Drosophila erecta]
 gi|190654209|gb|EDV51452.1| GG15524 [Drosophila erecta]
          Length = 502

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 151/292 (51%), Gaps = 23/292 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67
           +++ ++  Y++  +K + QNFL+D  +  KI +S+G +D    V+E+G GPG +T+ +L 
Sbjct: 192 TIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDSRDLVLEVGPGPGGITRSILR 251

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
              ++++++EKD +F     +LK+ +S    + +I  DD L+ + E+   + S  I +I 
Sbjct: 252 RHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIHLIG 311

Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           NLP+ I TRLL NW+   A     F      +TL FQ+EV ERI A        RLSV++
Sbjct: 312 NLPFAISTRLLINWLEDLAGRRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMS 371

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235
              T+  M F I    F P P+V   V+  IP   P   +P  L  ++++ +  F  R+K
Sbjct: 372 QVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFPL--VERVVRHIFSMRQK 429

Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             R+    L          + L  +A ++  +R   L++E   R+  + +++
Sbjct: 430 YCRRGFGTLLPPEDREEVAQKLFQRAEVQDTMRPFELTVEQCLRLAEVYSEH 481


>gi|240016023|ref|ZP_04722563.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA6140]
          Length = 259

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 131/260 (50%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+SP  F P+PK
Sbjct: 121 DDVA----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVSPESFDPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 177 IDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236

Query: 259 LRAENLSIEDFCRITNILTD 278
            RAE+++ E +  ++N L D
Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256


>gi|302035917|ref|YP_003796239.1| dimethyladenosine transferase [Candidatus Nitrospira defluvii]
 gi|300603981|emb|CBK40313.1| Dimethyladenosine transferase [Candidatus Nitrospira defluvii]
          Length = 267

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 131/256 (51%), Gaps = 19/256 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL+D NI++KI   +      TV+EIG G G LT  L     R VI +E D Q 
Sbjct: 10  KRLGQNFLIDPNIIRKIVSLAALGPEDTVLEIGPGRGALTAGLCAEAGR-VIAVEIDPQL 68

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIGTRLLFNWISA 140
            P L+D S  H   L++   DAL   FE       P+R  ++ANLPY + T +LF  + A
Sbjct: 69  QPHLQD-SLGHCRNLDLRIGDALAFPFETL-----PLRTVVVANLPYYVSTPILFALLDA 122

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  + L L+ Q EV  R+ A+ NS  YG LSVLT    +  + F +S + F P P 
Sbjct: 123 RAR---LDRLVLMLQTEVALRLAAKPNSEDYGVLSVLTQEAAEVDLAFRVSANCFRPRPT 179

Query: 201 VTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLH---QA 253
           V S V+H          P   E  +++ + +F  RRKTL  SL+  G   E +     +A
Sbjct: 180 VGSAVVHLRIKTQEGFEPVRHERFRRLVRASFAHRRKTLVNSLRDEGYPPEQIARATAEA 239

Query: 254 GIETNLRAENLSIEDF 269
           G+    RAE L+++D+
Sbjct: 240 GVPPQARAEMLTLDDY 255


>gi|170289118|ref|YP_001739356.1| dimethyladenosine transferase [Thermotoga sp. RQ2]
 gi|226732634|sp|B1LBH5|RSMA_THESQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|170176621|gb|ACB09673.1| dimethyladenosine transferase [Thermotoga sp. RQ2]
          Length = 260

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 136/259 (52%), Gaps = 18/259 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  Y +  KK++GQ FL D  I K+I +++       V+EIGAG G LT+ L   GAR V
Sbjct: 7   LKKYGVRLKKHLGQVFLSDDRIAKRIVKAADLTPEDVVVEIGAGAGTLTEELTKTGAR-V 65

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           I  E D+   PIL++  S++PN +E+  +D LK       ++      ++N+PYNI   L
Sbjct: 66  IAYEIDESLAPILQERLSKYPN-VELRFEDFLKAK-----DVPEGAICVSNIPYNITGPL 119

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +   I    W   ++   ++ QKEVGERI A+     YG LSV+     +   +FD+S  
Sbjct: 120 MEKIIE---WK--FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P+P+V STV+       P+    E  KK     F K+RKTL+ +LK      L    
Sbjct: 175 CFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNLKPF----LSIFE 228

Query: 254 GIETNLRAENLSIEDFCRI 272
           G++ + RAE L++E+   +
Sbjct: 229 GVDLSRRAEQLTVEEIVEL 247


>gi|282848961|ref|ZP_06258350.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745]
 gi|282581236|gb|EFB86630.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745]
          Length = 284

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 139/269 (51%), Gaps = 13/269 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ +I  ++    G  V+E+G G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTAGEPVLEVGPGIGTLTQGLAQSGA-D 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   +L    + + N + II  D LK+D     N   P +++ANLPY I T 
Sbjct: 74  VTAIELDRRLLEVLDTTLASYDN-VRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + + +    P  E L ++ QKEV  R+ A+  +  YG LSV   + T+  ++ D+ P
Sbjct: 132 IIMSLLESKL--PI-ERLVVMVQKEVALRMIAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFI-PHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG---- 246
             F P+P VTS+VI  +  +  P+    E L  ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRNKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITN 274
            E LL +A I+   R E  ++++F  + N
Sbjct: 249 IEELLAKANIDGLRRGETFTLQEFADVAN 277


>gi|21357273|ref|NP_648499.1| mitochondrial transcription factor B1 [Drosophila melanogaster]
 gi|74870888|sp|Q9VTM5|TFB1M_DROME RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; AltName:
           Full=d-mtTFB1; Flags: Precursor
 gi|17862606|gb|AAL39780.1| LD40326p [Drosophila melanogaster]
 gi|23093638|gb|AAF50022.2| mitochondrial transcription factor B1 [Drosophila melanogaster]
 gi|220946184|gb|ACL85635.1| mtTFB1-PA [synthetic construct]
 gi|220955884|gb|ACL90485.1| mtTFB1-PA [synthetic construct]
          Length = 330

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 151/292 (51%), Gaps = 23/292 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67
           +++ ++  Y++  +K + QNFL+D  +  KI +S+G +D    V+E+G GPG +T+ +L 
Sbjct: 20  TIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPRDLVLEVGPGPGGITRSILR 79

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
              ++++++EKD +F     +LK+ +S    + +I  DD L+ + E+   + S  I +I 
Sbjct: 80  RHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNIEQHIPDTSQRIHLIG 139

Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           NLP+ I TRLL NW+   A     F      +TL FQ+EV ERI A        RLSV++
Sbjct: 140 NLPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMS 199

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235
              T+  M F I    F P P+V   V+  IP   P   +P  L  ++++ +  F  R+K
Sbjct: 200 QVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHL--VERVVRHIFSMRQK 257

Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             R+    L          E L  +A ++  LR   L++E   R+  + +++
Sbjct: 258 YCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCLRLAEVYSEH 309


>gi|239818231|ref|YP_002947141.1| dimethyladenosine transferase [Variovorax paradoxus S110]
 gi|259494262|sp|C5CS95|RSMA_VARPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|239804808|gb|ACS21875.1| dimethyladenosine transferase [Variovorax paradoxus S110]
          Length = 255

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 15/258 (5%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK 78
           I +K  GQ+FL D  I+  I +      G  ++EIG G   LTQ L+  LG   VI +++
Sbjct: 4   IARKRFGQHFLSDGGIIDAIVQEIAPQPGDAMVEIGPGLAALTQPLVERLGRLTVIELDR 63

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNW 137
           D      L     +HP  LE+I+ D LKVDF       ++P+R++ NLPYNI T +LF+ 
Sbjct: 64  D------LAKRLREHPQ-LEVIESDVLKVDFAALATRFAAPLRVVGNLPYNISTPILFHL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +         + QKEV +R+ A+  +  Y RLSV+  WR +   +  + P  F P
Sbjct: 117 LG---FAHLIADQHFMLQKEVIDRMVARPATSDYSRLSVMLQWRYRMENVLFVPPESFDP 173

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-IE 256
            P+V S V+  +P   P       L +I Q AF +RRK +R +L +   E+    AG  +
Sbjct: 174 PPRVDSAVVRMVPLAEPPAVDAARLGEIVQVAFSQRRKIMRHTLGKWLDEHGF--AGQFD 231

Query: 257 TNLRAENLSIEDFCRITN 274
              RAE + + ++  +  
Sbjct: 232 AQRRAEEVPVAEYVALAQ 249


>gi|325106005|ref|YP_004275659.1| dimethyladenosine transferase [Pedobacter saltans DSM 12145]
 gi|324974853|gb|ADY53837.1| dimethyladenosine transferase [Pedobacter saltans DSM 12145]
          Length = 283

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 136/264 (51%), Gaps = 12/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK++GQ+FL D NI +KI +S    D    V+E+G G G L+  LL     +  +I+ D 
Sbjct: 26  KKHLGQHFLTDKNIAQKIVDSLIHTDKYKKVLEVGPGMGVLSDFLLQKTDYETYLIDIDT 85

Query: 81  QFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           + F  L     Q+PN  + +I  D L+++F   F    P  II N PYNI +++LF  + 
Sbjct: 86  ESFEFL---HKQYPNLGDKLINADFLQLNFRDIF--LEPFAIIGNFPYNISSQILFKVLE 140

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P    +  +FQKEV ER  A+  S  YG LSV      K   +F +   VF P P
Sbjct: 141 NRNHVP---EVVGMFQKEVAERCVAKAGSKEYGILSVFLQAYYKCEYLFTVKAGVFNPPP 197

Query: 200 KVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S VI    +      C E L  +I +  F +RRKTL  +L  +  + L  +  + T 
Sbjct: 198 KVLSAVIRLTRNETETLECNEKLFWQIVKAGFNQRRKTLSNALSGIIKKELQGEEEVWT- 256

Query: 259 LRAENLSIEDFCRITNILTDNQDI 282
           LRAE L+++DF  +TN++  N+ +
Sbjct: 257 LRAERLTVKDFVDLTNLIEQNKSL 280


>gi|121634495|ref|YP_974740.1| dimethyladenosine transferase [Neisseria meningitidis FAM18]
 gi|166221682|sp|A1KSW0|RSMA_NEIMF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120866201|emb|CAM09941.1| putative dimethyladenosine transferase [Neisseria meningitidis
           FAM18]
 gi|316983672|gb|EFV62653.1| dimethyladenosine transferase [Neisseria meningitidis H44/76]
 gi|325131849|gb|EGC54549.1| dimethyladenosine transferase [Neisseria meningitidis M6190]
 gi|325133788|gb|EGC56444.1| dimethyladenosine transferase [Neisseria meningitidis M13399]
 gi|325137899|gb|EGC60474.1| dimethyladenosine transferase [Neisseria meningitidis ES14902]
 gi|325143915|gb|EGC66225.1| dimethyladenosine transferase [Neisseria meningitidis M01-240013]
 gi|325200617|gb|ADY96072.1| dimethyladenosine transferase [Neisseria meningitidis H44/76]
          Length = 259

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|311743178|ref|ZP_07716986.1| dimethyladenosine transferase [Aeromicrobium marinum DSM 15272]
 gi|311313858|gb|EFQ83767.1| dimethyladenosine transferase [Aeromicrobium marinum DSM 15272]
          Length = 309

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 134/275 (48%), Gaps = 18/275 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K  GQNF++D N +++I   SG      V+EIG G G+LT  LL + 
Sbjct: 25  IRRLAEQVGVRPTKQRGQNFVIDANTVRRIVRVSGVGPTDVVVEIGPGLGSLTLALLEV- 83

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           AR+V+ +E D      L   ++ + P R +E++  DA++V         +P  ++ANLPY
Sbjct: 84  ARRVVAVEIDPALAGGLPATLADRAPGRDVEVVLADAMRV---TELPGPAPTALVANLPY 140

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+   +L  W  A  +P     L ++ Q EV  R+ A   S  YG  SV   W  +  + 
Sbjct: 141 NVSVPVLLTWFEA--FPSITSGL-VMVQAEVAHRLAAAPGSKIYGVPSVKAAWYAQVELA 197

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT----QEAFGKRRKTLRQSLKR 243
             +   VF+P+P V S ++ +           E L++ T      AF +RRKTLR +L  
Sbjct: 198 GTVGRQVFWPAPNVDSALVAWRRRPPGTELGDERLRRTTFAVVDAAFAQRRKTLRAALAG 257

Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           L G     E  L  AGI+   R E L + D+ R+ 
Sbjct: 258 LAGSPDVAEAALLAAGIDPRTRGEQLDVHDYVRLA 292


>gi|194748282|ref|XP_001956577.1| GF25284 [Drosophila ananassae]
 gi|190623859|gb|EDV39383.1| GF25284 [Drosophila ananassae]
          Length = 330

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 152/292 (52%), Gaps = 23/292 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLT 67
           +++ ++  YK+   K + QNFL+D  +  KI +S+G +D    V+E+G GPG +T+ +L 
Sbjct: 20  TIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDHSDIVLEVGPGPGGITRSILR 79

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
              +++I++EKD++F     +L++ +     +L+   DD L+ + E    + +  + +I 
Sbjct: 80  RQPQRLILVEKDERFGETLQLLRECAKPLNIQLDTYYDDILRFNIEHHVPDTTQRLHLIG 139

Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           NLP+ I TRLL NW    A     F  +   +TL FQKEV ERI A        RLSV++
Sbjct: 140 NLPFAISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAPVGGEQRCRLSVMS 199

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235
              T+  M F I    F P P+V   V+  IP   P   +P  L  ++++ +  F  R+K
Sbjct: 200 QIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFPL--VERVVRHIFSMRQK 257

Query: 236 TLRQSLKRL----GGE----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             R+    L    G E    NL  +A ++  LR+  LS+E   R+  + +++
Sbjct: 258 YCRRGYGTLFPQEGREEVTQNLFQRAEVQDTLRSFELSVEQCLRLAEVYSEH 309


>gi|282891871|ref|ZP_06300350.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498131|gb|EFB40471.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 282

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 153/287 (53%), Gaps = 22/287 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K + L   L+   I PKK + QNFL+D NI++KIA ++ +     ++EIG GPG+LT+ L
Sbjct: 5   KPNELFAFLNSLGIRPKKGLSQNFLIDGNIIRKIAATAAASSDDVILEIGPGPGSLTECL 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFF----NISSPIR 120
           L  GA+ VI +EKD Q    L  I  Q P + L++  +D LK   E  F          +
Sbjct: 65  LETGAQ-VIAVEKDNQLAEAL--IRLQTPAQTLQVHCEDILKFPIESVFKQELKAGKKAK 121

Query: 121 IIANLPYNIGTRLLFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           +IANLPY++ + +L     A+  P   ++ ++T++ Q+EV  R TA   S  +   ++  
Sbjct: 122 VIANLPYHLTSSIL-----AELAPLHAYFSTITVMVQEEVARRFTAMPGSREFSAFTLFL 176

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237
            + +     F +    F+P+PKV S V+    HL   P    +    +T++AF +RRK +
Sbjct: 177 NFFSNPVYNFKVGKQCFYPAPKVDSAVMTL--HLKSPPQVDQQGFFTLTRKAFEQRRKMI 234

Query: 238 RQSLKRLGGENLLHQA----GIETNLRAENLSIEDFCRITNILTDNQ 280
           + +LK +     + QA    GI   +RAE+LS++D+ ++  IL   +
Sbjct: 235 KSALKSIYEPEKVMQALEGIGINPLVRAEDLSLDDYLKLFAILKKTE 281


>gi|302380914|ref|ZP_07269376.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3]
 gi|302311292|gb|EFK93311.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3]
          Length = 283

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 140/278 (50%), Gaps = 18/278 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K IL  +     K +GQNFL+D N+++ I + S   +   VIEIG G G LT+ L+   
Sbjct: 11  IKEILDKFGFKFSKALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVD-K 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            + +  IE D +   +LK       N  +II +D LKV+  +  +     +++ANLPY I
Sbjct: 70  CKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVNLNELNHEDKKFKVVANLPYYI 128

Query: 130 GTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
            T +   LFN+          ES+T++ QKEV  R+ A   S  Y  LS+     + A +
Sbjct: 129 TTPIIEHLFNY------RDIIESITVMVQKEVANRMVADVGSKDYASLSLFVKQNSDAKI 182

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---- 242
           + +    VF P PKV S V++            E L+++ +  F KRRKT+  S      
Sbjct: 183 ILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILNSFTSGFV 242

Query: 243 RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILT 277
            +  E L   L + G++ NLRAENLS+ED+  I   L+
Sbjct: 243 NVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280


>gi|15676595|ref|NP_273739.1| dimethyladenosine transferase [Neisseria meningitidis MC58]
 gi|27151605|sp|Q9K0B7|RSMA_NEIMB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|7225925|gb|AAF41114.1| dimethyladenosine transferase [Neisseria meningitidis MC58]
 gi|325139924|gb|EGC62454.1| dimethyladenosine transferase [Neisseria meningitidis CU385]
          Length = 259

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|254673623|emb|CBA09163.1| dimethyladenosine transferase [Neisseria meningitidis alpha275]
          Length = 259

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|150009182|ref|YP_001303925.1| dimethyladenosine transferase [Parabacteroides distasonis ATCC
           8503]
 gi|166221684|sp|A6LF39|RSMA_PARD8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|149937606|gb|ABR44303.1| dimethyladenosine transferase [Parabacteroides distasonis ATCC
           8503]
          Length = 266

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/265 (36%), Positives = 131/265 (49%), Gaps = 23/265 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL I ++IA++  +   + V+EIG G G LTQ LL  G   + V+E 
Sbjct: 4   VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62

Query: 79  D-------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D        Q FP LK           II +D LK+D  K F       +I N PYNI +
Sbjct: 63  DMESVDYLNQNFPDLKG---------RIIAEDFLKLDLSKLF--PGQFCVIGNYPYNISS 111

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           ++ F  +      P       + QKEV ER+ A   S  YG LSVL         +F +S
Sbjct: 112 QIFFKVLDYKDQIPCCSG---MLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVS 168

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLL 250
             VF P PKV S V+    +      C E L K + + +F +RRKTLR S+K L G++  
Sbjct: 169 EKVFDPPPKVKSAVLKMTRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCP 228

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             A    + R E LS+E F  +T I
Sbjct: 229 DYALPIFDKRPEQLSMEQFVELTLI 253


>gi|299143369|ref|ZP_07036449.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517854|gb|EFI41593.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 288

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 145/278 (52%), Gaps = 16/278 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   L  +L+ Y     K +GQNFL+D NI++KI +S+       V+EIG G G LT+ L
Sbjct: 6   KPARLIELLNKYGFRFSKSLGQNFLIDGNIVRKIVDSAEISSNDNVLEIGPGVGTLTEEL 65

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRII 122
             L A+KV+ IE D     +LK+ S  + N ++II +D LK D +KF          +++
Sbjct: 66  -CLRAKKVVSIEIDNHLKELLKE-SLPYEN-VKIIFNDVLKTDLKKFTEQEFGGETFKVV 122

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   I  D      ES+T++ QKEV  R +A  ++  YG LSV   + +
Sbjct: 123 ANLPYYVTTPIISKLIEEDLN---IESITVMIQKEVANRFSASPSTKDYGSLSVFIQFYS 179

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
                F +  +VF P P V S V++     +      + L K+ + AF KRRKTL  +L 
Sbjct: 180 DVKYEFTVPKNVFMPKPNVDSAVVNLKIKKDLPDIDRDKLFKVVRAAFSKRRKTLINALS 239

Query: 243 RLG---GENLLHQA----GIETNLRAENLSIEDFCRIT 273
             G    +N + +A     I+   RAE LS E+F  ++
Sbjct: 240 SYGFNIDKNEILKALSISNIDEKRRAETLSSEEFIVLS 277


>gi|218780962|ref|YP_002432280.1| dimethyladenosine transferase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762346|gb|ACL04812.1| dimethyladenosine transferase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 289

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 147/280 (52%), Gaps = 15/280 (5%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           NN++ S K +L+ + + PKK  GQNFL D    +   E +      +V+EIG G G LT 
Sbjct: 7   NNRALSAKALLAAFDLKPKKAKGQNFLADPATARACVERADLSPDDSVLEIGPGLGALT- 65

Query: 64  MLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + ++  A++VI +E D     +L++ I S   + + I+  D LK D       +    ++
Sbjct: 66  IPMSRKAKQVIAVEWDTNLAKVLENQIESLGLSNITILNQDILKTDIRGIAERAGGNMVV 125

Query: 123 A-NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           A NLPYNI +++L   I        ++   L+FQ E+ +RI A+     YGR++VL  + 
Sbjct: 126 AANLPYNISSQVLIRLIQNRD---LFKKAALMFQTELAQRIMAEPGGKDYGRITVLAQYS 182

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQS 240
           ++  +++ + P  F+P P+V S V+ F+    P P   E  L  + + AF KRRKTL+ +
Sbjct: 183 SRIRVLYSLGPAHFYPKPQVDSQVLEFL-FKEPDPSVNEDILFAVVKAAFAKRRKTLKNA 241

Query: 241 LKR----LGGEN---LLHQAGIETNLRAENLSIEDFCRIT 273
           L        GE     L +AGI+   RAE LS+++F  + 
Sbjct: 242 LSNSELPFSGEQAQAALDEAGIDPKRRAETLSVDEFVALA 281


>gi|83025297|gb|ABB95741.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 147/297 (49%), Gaps = 24/297 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L+  
Sbjct: 4   STRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRALIGN 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------SSP---- 118
           GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +        SP    
Sbjct: 64  GARQVLVIEKDARFLNPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQVPD 123

Query: 119 IRIIANLPYNIG----TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGR 173
           IR+++NLP+NI      R + +  + D    +      L FQKEV ERI A+    +  R
Sbjct: 124 IRLVSNLPFNITMPFLVRTIRDMAAXDNLFSYGRVPAVLTFQKEVAERIIARPGDRNRSR 183

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232
           LSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    F  
Sbjct: 184 LSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSLFHG 243

Query: 233 RRKTLRQSLKRL-GGENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           ++K +R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 244 KQKXVRKTIGHLFPNQNRLERAXILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|255068286|ref|ZP_05320141.1| dimethyladenosine transferase [Neisseria sicca ATCC 29256]
 gi|255047478|gb|EET42942.1| dimethyladenosine transferase [Neisseria sicca ATCC 29256]
          Length = 259

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 131/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ VIE D+ 
Sbjct: 7   RKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF    +I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVRRLKTLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G+  L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDEDLQAVGISP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVELSNYLV 255


>gi|227486185|ref|ZP_03916501.1| dimethyladenosine transferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235816|gb|EEI85831.1| dimethyladenosine transferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 280

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 143/276 (51%), Gaps = 17/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTL 68
           +K I+  Y     K +GQNFL+D N + KI E +  + G  VIE+G G G ++ +M  T 
Sbjct: 10  VKDIIDLYGFRFSKSLGQNFLIDKNFVDKIVEGA-DIAGKNVIEVGPGIGTISYEMAKT- 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIAN 124
             +K+++IE D    PIL++  S   N + II  D LK D +K    +F        ++N
Sbjct: 68  -CKKLVLIEIDSSLIPILEENMSDFDN-VTIIHQDILKTDLKKIQDEYFG-GEAFDFVSN 124

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T ++      D       S+T++ QKEV +R+ A +    Y  LSV   + ++A
Sbjct: 125 LPYYITTPIIEKIFEEDLD---CHSMTIMVQKEVADRMLATEKDKDYSSLSVFVKYYSEA 181

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            ++  +   VF P PK+ S+V+     +       E L  + +  F KRRKT+  SL  +
Sbjct: 182 RLLTKVPKSVFMPQPKIDSSVLRLDLRIYDEKVNKERLFALVKAGFLKRRKTILNSLSAV 241

Query: 245 GGENLLHQA----GIETNLRAENLSIEDFCRITNIL 276
             ++ L +      ++ NLRAENLS++D+ +I N L
Sbjct: 242 AEKDDLKKVFEILNLKENLRAENLSLDDYIKIVNEL 277


>gi|229816980|ref|ZP_04447262.1| hypothetical protein BIFANG_02235 [Bifidobacterium angulatum DSM
           20098]
 gi|229785725|gb|EEP21839.1| hypothetical protein BIFANG_02235 [Bifidobacterium angulatum DSM
           20098]
          Length = 296

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 136/282 (48%), Gaps = 13/282 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I     + P K  GQNF++D   +++I   +       V+E+G G G+LT  +L
Sbjct: 16  AADIRRIADEAGVSPTKKFGQNFVIDPGTVRRIVREAHVEADTHVLEVGPGLGSLTLAIL 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D      L +  ++       RL I+  DAL VD      F    P  
Sbjct: 76  ETGA-TMTAVEIDPPLAERLPNTVAEFMPDASKRLSIVNRDALTVDPATLPEFADGKPFT 134

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D      +S  ++ QKEV +R+ A   +  YG  SV   
Sbjct: 135 LVANLPYNVATPILLTLLERFDNL----DSFLVMVQKEVADRLAATPGNKIYGTPSVKLA 190

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLR 238
           W  +A  +  I  +VF+P+P V S ++HF     P P  L E    +   AFG+RRKTL 
Sbjct: 191 WYGEAKRVGTIGRNVFWPAPNVDSALVHFQRFGTPRPQELRERTFSLIDAAFGQRRKTLH 250

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +LK++        AGI+   R E L+I++F  +   +  N+
Sbjct: 251 AALKKIVPAEAFEAAGIDPTRRGETLTIDEFVALATAMEGNE 292


>gi|313115046|ref|ZP_07800536.1| dimethyladenosine transferase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622608|gb|EFQ06073.1| dimethyladenosine transferase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 287

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 139/283 (49%), Gaps = 24/283 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +   Y     K  GQNF+++  +  KI ++SG      VIEIG G G LT+ L    
Sbjct: 13  IRALCEKYDFALSKGFGQNFIINPGLPPKIVDASGVDKRYGVIEIGPGIGVLTRELAKRA 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124
           A KV+ IE D++  P+L +  +   N  +++  D LKVD      E+F  +  P+ + AN
Sbjct: 73  A-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM--PVAVCAN 128

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I + ++   +  D  P   ESLT++ QKE  +R+ A   +     +S    +   +
Sbjct: 129 LPYYITSPIVMKLLG-DRLP--IESLTVMVQKEAADRLAAAPGTRASSAISCAVSYYATS 185

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQS 240
            MMF  +P  F+P+PKVTS V+     + P P       E    + + AFG+RRKT   +
Sbjct: 186 KMMFTAAPGSFYPAPKVTSAVVRM--EIRPQPAVQVEDEEGYFALVRAAFGQRRKTAANA 243

Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +    G         +  AG +  +R E L++EDF +I   L 
Sbjct: 244 IASGLGMPKDAVTAAIEAAGFDARIRPEALTLEDFAKIQQALA 286


>gi|240112378|ref|ZP_04726868.1| dimethyladenosine transferase [Neisseria gonorrhoeae MS11]
 gi|254493179|ref|ZP_05106350.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae 1291]
 gi|268598439|ref|ZP_06132606.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae MS11]
 gi|212278037|gb|ACJ23033.1| KsgA [Neisseria gonorrhoeae]
 gi|226512219|gb|EEH61564.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae 1291]
 gi|268582570|gb|EEZ47246.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae MS11]
          Length = 259

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 130/260 (50%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF    NI    +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV +R+ A   S  YGRL V+  +     M+ D+ P  F P+PK
Sbjct: 121 DDV----ADMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 177 IDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236

Query: 259 LRAENLSIEDFCRITNILTD 278
            RAE+++ E +  ++N L D
Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256


>gi|86130919|ref|ZP_01049518.1| dimethyladenosine transferase [Dokdonia donghaensis MED134]
 gi|85818330|gb|EAQ39490.1| dimethyladenosine transferase [Dokdonia donghaensis MED134]
          Length = 288

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/265 (34%), Positives = 140/265 (52%), Gaps = 14/265 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK++GQ+FL D ++ + I ++  +L+G   ++EIG G G LT+ +L   A ++ V++ D 
Sbjct: 27  KKHLGQHFLGDESVARDIGDTL-TLEGYKHILEIGPGTGVLTKYILAKPA-QLTVMDLDT 84

Query: 81  QFFPILKD-ISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +    L+   + +H     +  +++ D LK D +  +    P+ I  N PYNI T+++F 
Sbjct: 85  ESIEYLRSSFTLEHKLNDEKFTVLEADFLKYDLDTIYP-GEPLAITGNFPYNISTQIVFK 143

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I      P     T +FQKEV  RI A   S  YG LSVL      A  +F + P VF 
Sbjct: 144 TIEHKERIP---EFTGMFQKEVAARICADHGSKTYGILSVLAQAFYDAEYLFTVPPTVFI 200

Query: 197 PSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S V+      N   I C  E L K+ + AF +RRKTLR SLK +G  +   ++ 
Sbjct: 201 PPPKVDSGVLRLKRKENFKDIGCTEEMLFKVVKMAFQQRRKTLRNSLKGMGLSDCFRESE 260

Query: 255 IETNLRAENLSIEDFCRITNILTDN 279
           I  N R E +S++ F  +T  +T +
Sbjct: 261 I-LNKRPEQISVQGFIELTAAITKD 284


>gi|285019524|ref|YP_003377235.1| dimethyladenosine transferase [Xanthomonas albilineans GPE PC73]
 gi|283474742|emb|CBA17241.1| probable dimethyladenosine transferase protein [Xanthomonas
           albilineans]
          Length = 264

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 127/261 (48%), Gaps = 18/261 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL D + +  I  +     G  ++EIG G G +T  LL     ++ VIE D+ 
Sbjct: 12  KKSLGQHFLSDRHYIDNIVRAVDPKPGDRLVEIGPGQGAITFPLLRRHG-QLTVIEFDRD 70

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   ++ +   L I+  D L VDF         IR++ NLPYNI + +LF+ +   
Sbjct: 71  LIEPLT-TAAANLGELTILHRDVLSVDFGAMAG-DGRIRLVGNLPYNISSPILFHALDHA 128

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                   +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PKV
Sbjct: 129 AA---ITDMHFMLQKEVVDRMAAAPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPKV 185

Query: 202 TSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            S V+  +P         +P          + + AFG+RRKTLR +L  +        AG
Sbjct: 186 DSAVVRLVPRTAQEVGIADP-----RRFADVVRAAFGQRRKTLRNALNGVCDAPQFEAAG 240

Query: 255 IETNLRAENLSIEDFCRITNI 275
           +  + RAE L++ DF R+ N+
Sbjct: 241 VRADARAEQLAVADFVRLANL 261


>gi|241759911|ref|ZP_04758011.1| dimethyladenosine transferase [Neisseria flavescens SK114]
 gi|241319919|gb|EER56315.1| dimethyladenosine transferase [Neisseria flavescens SK114]
          Length = 263

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 132/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L+     ++ V E D+ 
Sbjct: 11  RKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLVK-KLNRLHVCEIDRD 69

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF    +I    +I+ NLPYNI T LLF    ++
Sbjct: 70  IVRRLKTLP--FADKLVIHEGDVLQFDFN---SIEGKKKIVGNLPYNISTPLLFRLSEVA 124

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ AQ  +  YGRL V+  +     M+ ++ P  F P+P
Sbjct: 125 DDVI-----DMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPAP 179

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 180 KVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 239

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 240 QDRAEHIAAEKYVELSNYLV 259


>gi|301310976|ref|ZP_07216905.1| dimethyladenosine transferase [Bacteroides sp. 20_3]
 gi|300831039|gb|EFK61680.1| dimethyladenosine transferase [Bacteroides sp. 20_3]
          Length = 266

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 131/265 (49%), Gaps = 23/265 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL I ++IA++  +   + V+EIG G G LTQ LL  G   + V+E 
Sbjct: 4   VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62

Query: 79  DQQF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D +        FP LK           II +D LK+D  K F       +I N PYNI +
Sbjct: 63  DMESVDYLNLNFPDLKG---------RIIAEDFLKLDLSKLF--PGQFCVIGNYPYNISS 111

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           ++ F  +      P       + QKEV ER+ A   S  YG LSVL         +F +S
Sbjct: 112 QIFFKVLDYKDQIPCCSG---MLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVS 168

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLL 250
             VF P PKV S V+    +      C E L K + + +F +RRKTLR S+K L G++  
Sbjct: 169 EKVFDPPPKVKSAVLKITRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCP 228

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
             A    + R E LS+E F  +T I
Sbjct: 229 DYALPIFDKRPEQLSVEQFVELTLI 253


>gi|323143362|ref|ZP_08078050.1| dimethyladenosine transferase [Succinatimonas hippei YIT 12066]
 gi|322416880|gb|EFY07526.1| dimethyladenosine transferase [Succinatimonas hippei YIT 12066]
          Length = 269

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 134/261 (51%), Gaps = 10/261 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL+D  I+  I ++    +G  ++EIG G   LT+ +L   A+ +  IE D+ 
Sbjct: 11  RKRFGQNFLVDDFIIGAIVDAINPKEGDYLVEIGPGHAALTRPVLE-RAKALTAIELDRD 69

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              IL+  S      L +I+ DALKV+FE     S  +R+  NLPYNI + ++F+ +S  
Sbjct: 70  LAAILR--SDPFLKGLTLIEADALKVNFEALPG-SGDLRVFGNLPYNITSPIIFHLLSQR 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV +R+ A  +   YGRL+V+  +  +   + D+ P  F P PKV
Sbjct: 127 GI----KDMHFMLQKEVVDRLCAGPHCRDYGRLTVMVQYHAEVIPVLDVPPEAFRPRPKV 182

Query: 202 TSTVIHFIP-HLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S V+   P +L      L   L  +   AF  RRKTLR SL  L     +    I+T L
Sbjct: 183 NSAVVRLKPKNLTDDERALAPFLNTVALNAFNTRRKTLRNSLSTLFCTEEMQDLNIDTTL 242

Query: 260 RAENLSIEDFCRITNILTDNQ 280
           RAE+L++  F  +   L D +
Sbjct: 243 RAEDLNLASFVVLAKALRDKK 263


>gi|329118095|ref|ZP_08246807.1| dimethyladenosine transferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465755|gb|EGF12028.1| dimethyladenosine transferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 269

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 136/261 (52%), Gaps = 19/261 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKD 79
           +K  GQNFL D  I+  I  +       TVIEIG G   L  +   L A+  ++ V+E D
Sbjct: 17  RKRFGQNFLQDTRIIADIVNAVRPQPDDTVIEIGPG---LAAITAPLAAKLNRLHVVEID 73

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-- 137
           +     LK++     ++L I + D L+ DF    +I+   +I+ NLPYNI T LLF    
Sbjct: 74  RDIVARLKNLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFRLSE 128

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I+ D        +  + QKEV ER+TA   S  YGRLSV+  +  +   + ++ P  F P
Sbjct: 129 IADDVA-----DMHFMLQKEVVERMTAAPGSNDYGRLSVMLQYFFEMEPLINVPPEAFSP 183

Query: 198 SPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S V+  IP  + I      ++  ++ + AF +RRKT+R +LK L  +  L  AGI
Sbjct: 184 APKVDSAVVRMIPLKHRIGRADDFDAFARLVKAAFHQRRKTIRNNLKELAADGDLQAAGI 243

Query: 256 ETNLRAENLSIEDFCRITNIL 276
               R E+++ E +  ++N L
Sbjct: 244 NPQDRPEHIAPEKYVGLSNYL 264


>gi|303327382|ref|ZP_07357823.1| dimethyladenosine transferase [Desulfovibrio sp. 3_1_syn3]
 gi|302862322|gb|EFL85255.1| dimethyladenosine transferase [Desulfovibrio sp. 3_1_syn3]
          Length = 274

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 136/265 (51%), Gaps = 13/265 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL    I  +IA          V+EIG GPG LT+ L       ++++EKD+ 
Sbjct: 15  KKSLGQHFLRREEICDRIAALLLPQAEDRVLEIGPGPGALTRALEAAPHACLLLLEKDRH 74

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +     +   Q   R + +  DAL+ D+ +  +   P ++I NLPYN+ + L+++ +S  
Sbjct: 75  W---AAERQRQAAPRTQAVLTDALRFDWRRI-SPEHPWKVIGNLPYNVASPLIWDIVSRA 130

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 +    + QKEVG+R+ A   + HYG LSV      +  + F + P  F P PKV
Sbjct: 131 E---GLKRAVFMVQKEVGQRLAAAPGNGHYGALSVWVQSYARPRLEFVVGPGAFSPPPKV 187

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQAGIE 256
            S V+ F P L P   P   ++L ++ +  F +RRK L    +R G    E  L QAG+ 
Sbjct: 188 DSAVLSFEP-LPPEAQPAHPKALARLLRICFQQRRKQLGGIFRRAGLPQMERALDQAGLA 246

Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281
            +LR E LS +DF R+++ L  N D
Sbjct: 247 PSLRPEALSTDDFQRLSSFLALNLD 271


>gi|319953425|ref|YP_004164692.1| dimethyladenosine transferase [Cellulophaga algicola DSM 14237]
 gi|319422085|gb|ADV49194.1| dimethyladenosine transferase [Cellulophaga algicola DSM 14237]
          Length = 289

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/266 (34%), Positives = 135/266 (50%), Gaps = 14/266 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL D +I K+IAE+         IEIG G G LT+ +L      ++ ++ D +
Sbjct: 28  KKHLGQHFLKDEDIAKQIAETLTFKGYENAIEIGPGTGVLTKYILEQDIN-LVAMDLDSE 86

Query: 82  FFPILKD-ISSQHPN------RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
               L D    +HP         ++I+ D LK D    F       I  N PYNI T+++
Sbjct: 87  SIVYLNDSFLLEHPKFIGRKKEFKVIEADFLKYDVSTLFG-DEQFAITGNFPYNISTQIV 145

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +      P     + +FQKEV +RI  ++ S  YG LSVL      A  +F + P V
Sbjct: 146 FKLLEIRNLVP---EFSGMFQKEVAQRICEKEGSKTYGILSVLVQAFFDAEYLFTVPPTV 202

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F P PKV S V+      N  + C  +SL ++ + AFG+RRKT+R SLK     + L + 
Sbjct: 203 FNPPPKVESGVLRLTRKENQTLDCNEKSLYRVVKAAFGQRRKTIRNSLKTFNLSDSLRED 262

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
            I  + R E LS+ DF  +TN + ++
Sbjct: 263 TI-FDKRPEQLSVTDFISLTNKIDND 287


>gi|295105199|emb|CBL02743.1| dimethyladenosine transferase [Faecalibacterium prausnitzii SL3/3]
          Length = 283

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 141/284 (49%), Gaps = 28/284 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +   Y     K  GQNF+++  I  KI ++SG      VIEIG G G LT+ L    
Sbjct: 10  IRALCEKYDFALSKGFGQNFIINPGIPTKIVDASGVDKRYGVIEIGPGIGVLTKELAKRA 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124
           A KV+ IE D++  P+L +  +   N  +++  D LKVD      E+F  +  P+ + AN
Sbjct: 70  A-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM--PVAVCAN 125

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I + ++   +  D  P   ESLT++ QKE  +R+ A   +     +S    +   +
Sbjct: 126 LPYYITSPIVMKLLG-DRLP--IESLTVMVQKEAADRLAAVPGTRASSAISCAVNYYATS 182

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQS 240
            +MF  +P  F+P+PKVTS V+     + P P            + + AFG+RRKT   +
Sbjct: 183 KLMFTAAPGSFYPAPKVTSAVVRM--DIRPTPAVQVEDEAGYFALVRAAFGQRRKTAANA 240

Query: 241 LKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
           +   GG NL        +  AG +  +R E L++EDF +I   L
Sbjct: 241 IA--GGLNLPKEKVIAAIESAGFDARIRPEALTLEDFAKIQQAL 282


>gi|241765842|ref|ZP_04763779.1| dimethyladenosine transferase [Acidovorax delafieldii 2AN]
 gi|241364241|gb|EER59413.1| dimethyladenosine transferase [Acidovorax delafieldii 2AN]
          Length = 256

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 131/261 (50%), Gaps = 18/261 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+  LG   VI +
Sbjct: 2   KHIPRKRFGQHFLSDGGIIDAIVSAIAPQPGQPMVEIGPGLAALTQPLVERLGRLTVIEL 61

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNIGTRL 133
           ++D      L         +LE+I+ D LKVDF +     +++  +R++ NLPYNI T +
Sbjct: 62  DRDLALRLRLH-------GQLEVIESDVLKVDFTQLARDMHVAR-LRVVGNLPYNISTPI 113

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +         E    + QKEV +R+ A   +  YGRLSV+  WR     +  + P 
Sbjct: 114 LFHLLDHVQ---VIEDQHFMLQKEVIDRMVAAPATADYGRLSVMLQWRYAMENVLFVPPE 170

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGENLLHQ 252
            F P P+V S V+  +P   P+      L ++ Q AF +RRK LR +L R L G      
Sbjct: 171 SFDPPPRVDSAVVRMVPWAEPVAVPPALLSELVQVAFSQRRKLLRHTLGRWLEGRGF--G 228

Query: 253 AGIETNLRAENLSIEDFCRIT 273
              +T  RAE + ++++  + 
Sbjct: 229 GTFDTQRRAEEVPVQEYVALA 249


>gi|332019925|gb|EGI60385.1| Dimethyladenosine transferase 1, mitochondrial [Acromyrmex
           echinatior]
          Length = 351

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 142/291 (48%), Gaps = 26/291 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ IL  Y +   K + QNFLLD N+ KKI   +G++ G  V+E+G GPG LT+ +L  
Sbjct: 11  TIRDILKLYNLSAIKRLSQNFLLDENLTKKIVAKAGNISGGQVLEVGPGPGGLTRSILKK 70

Query: 69  GARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF--------NISS 117
              +++V+EKD++F P L+ ++        +++II DD LK + E  F        N   
Sbjct: 71  TPERLVVVEKDKRFKPTLEMLADSFGAINGKMDIIYDDILKTNIESLFPLEKKRNWNDKP 130

Query: 118 P-IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           P I +I NLP+++ T L+  W+ A       W      +TL FQKEV ER+ A       
Sbjct: 131 PDIFVIGNLPFSLSTHLIIQWLHAISEQRGPWAFGRTKMTLTFQKEVAERLVAPPMGDQR 190

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+    T   + F I    F P P V   V+ F P + P      +  + IT+  F
Sbjct: 191 CRLSVMAQTWTFPVLRFIIPGEAFVPKPDVDVGVVSFTPLVKPRTQYDFKFFEMITRHIF 250

Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRIT 273
             R+K   + ++ L         G  +   A +E  L+   L+IED  ++ 
Sbjct: 251 NFRQKYSIRCIETLFPKEHRKDLGLMMYKLADLEPTLKPTQLTIEDINKLA 301


>gi|258513475|ref|YP_003189697.1| dimethyladenosine transferase [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777180|gb|ACV61074.1| dimethyladenosine transferase [Desulfotomaculum acetoxidans DSM
           771]
          Length = 305

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 146/274 (53%), Gaps = 27/274 (9%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL+D NI+ KI  ++       V+EIG G G LTQ +    +R V+ IE D++ 
Sbjct: 23  KKLGQNFLIDSNIISKIISAADLRSEDLVVEIGPGLGVLTQSIADEVSR-VLSIEIDRKL 81

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRLLFNW 137
            PIL +++ +  +  ++I  DALK DF++         S   ++IANLPY I T LL + 
Sbjct: 82  QPIL-EVNLKEYSNTKVIFQDALKTDFDRLVYAEAGGKSRSYKVIANLPYYITTPLLMHI 140

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           + +       E + ++ Q+EV ER+TA      YG LSV   + T+  ++  +   VF P
Sbjct: 141 LESKFN---VELIVIMVQREVAERMTAPPGKKDYGALSVAVQYYTEPEIICRVPKTVFIP 197

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGGEN------ 248
           +P+V STVI  I    P P  L+S K    + + AF +RRKT+   L  + G N      
Sbjct: 198 APEVDSTVIRLIKRKLP-PVQLKSEKLFFNLVRTAFNQRRKTV---LNAMQGSNWGLMKE 253

Query: 249 ----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
               +L +AGI+   R E  S++DF  ++N + +
Sbjct: 254 EWKIILEKAGIDPMRRGETFSLQDFAMLSNCVYE 287


>gi|296314706|ref|ZP_06864647.1| dimethyladenosine transferase [Neisseria polysaccharea ATCC 43768]
 gi|296838541|gb|EFH22479.1| dimethyladenosine transferase [Neisseria polysaccharea ATCC 43768]
          Length = 259

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 132/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ VIE D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVHPQADDIVIEIGPGLAAITEPLAK-KLNRLHVIEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF    +I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|284048769|ref|YP_003399108.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM
           20731]
 gi|283952990|gb|ADB47793.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM
           20731]
          Length = 284

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 134/265 (50%), Gaps = 12/265 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  + +  KK  GQNFL++  +++ IA  +    G  V+EIG G G LTQ L   GA
Sbjct: 13  RYILDTFGLRAKKKFGQNFLINEQVVRGIAREAQVGPGDLVLEIGPGIGTLTQALAETGA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +V  +E D+   P+L      + N +EI+  D LKVD         P  + ANLPY I 
Sbjct: 73  -QVKSVEIDRTLLPVLAKTLEGYDN-VEIVPGDVLKVDLGAVTK-HRPFTVAANLPYYIT 129

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++F  +  D      + L ++ QKEV ER+ A      YG LS+   + ++  +   +
Sbjct: 130 TPIIFALLEEDLP---LQRLVVMVQKEVAERMIASPGGKDYGPLSLALQYYSRPRLAIPV 186

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG---- 245
               F P+P+V S V+      +P +    +   ++ + AF +RRK L   LK LG    
Sbjct: 187 PARDFMPAPRVDSMVVVCEKREHPAVDVPAKVFFRVVKAAFSQRRKMLSNCLKNLGLSGD 246

Query: 246 -GENLLHQAGIETNLRAENLSIEDF 269
             + LL +AGI+   R E+L++E+F
Sbjct: 247 QVQQLLAEAGIDGKRRGESLTMEEF 271


>gi|300814328|ref|ZP_07094600.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511595|gb|EFK38823.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 288

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 142/280 (50%), Gaps = 28/280 (10%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +  IL  Y     K +GQNFL+D NI++KI +S+   +   V+EIG G G LT+  
Sbjct: 6   KPKRVSEILKKYNFRFSKTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGTLTEE- 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFN---ISSPIR 120
           L L A+KV+ IE D++    LKD+  +    + ++II  D LK+D +   +        +
Sbjct: 65  LALRAKKVVSIEIDKR----LKDLLEETLPYDNVKIIYKDFLKLDLKTLIDEEFKGQNFK 120

Query: 121 IIANLPYNIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           ++ANLPY I T    +LL N  +        E + ++ QKEV +R TAQ  +  YG LSV
Sbjct: 121 VVANLPYYITTPIIEKLLLNSEN-------IEIINVMIQKEVAKRFTAQPQTKDYGSLSV 173

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
              +  KA   F +   VF P P V S V       +      E   KI + AF KRRKT
Sbjct: 174 FIQFFCKAFYEFTVPRTVFMPKPNVDSGVCKLEVKRDLPNIDREEFFKIVRAAFSKRRKT 233

Query: 237 LRQSLK-------RLGGENLLHQAGIETNLRAENLSIEDF 269
           L  SL        +     +L  +GI+T  RAE+L++EDF
Sbjct: 234 LVNSLSQSQLNLDKNKVTEILELSGIDTKRRAESLTLEDF 273


>gi|260767123|ref|ZP_05876068.1| dimethyladenosine transferase [Vibrio furnissii CIP 102972]
 gi|260617878|gb|EEX43052.1| dimethyladenosine transferase [Vibrio furnissii CIP 102972]
 gi|315181266|gb|ADT88180.1| dimethyladenosine transferase [Vibrio furnissii NCTC 11218]
          Length = 271

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 13/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPQPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + +  + QKEV  R+ A   S  YGRL+V+T +  K   + ++ P  F P 
Sbjct: 127 E---FHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMTQYYCKVVPVLEVPPTAFVPP 183

Query: 199 PKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P+ + P P   L+ L ++ +E F +RRKT+R   K L    +L + G+ 
Sbjct: 184 PKVDSAVVRLVPYEDLPHPTTSLKWLDRVVREGFNQRRKTVRNCYKGLLELEVLEELGVN 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
             +R ENL+++ F  + N L  N 
Sbjct: 244 PGMRPENLTLQQFVAMANWLDANH 267


>gi|223983387|ref|ZP_03633573.1| hypothetical protein HOLDEFILI_00853 [Holdemania filiformis DSM
           12042]
 gi|223964559|gb|EEF68885.1| hypothetical protein HOLDEFILI_00853 [Holdemania filiformis DSM
           12042]
          Length = 291

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 145/281 (51%), Gaps = 17/281 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL+ Y +  KK  GQNF+++  I++KIA  S + +   VIEIG G G LT+ L  + A +
Sbjct: 14  ILAKYDLYAKKNFGQNFIIEPGIVEKIARLSHADEHSAVIEIGPGIGALTEQLARV-AGQ 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYN 128
           V+  E D +   +L D  S +P+ +E++  D L+ D     EK     + + + ANLPY 
Sbjct: 73  VLAFEIDDRLIEVLADTLSDYPH-VEVVHQDFLEADLNATVEKLKTQWNQVLVCANLPYY 131

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +LF    +    P    +T++ QKEV +R TA  ++  Y  LSV+  ++ +   + 
Sbjct: 132 ITTPILFKIFESKADIPV---ITVMMQKEVADRFTAAVSTKDYNALSVIVQYQYQVQTVM 188

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRL-- 244
            I   +F P P V S V+ F     P+    +  +   + +  F +RRKTL  + +    
Sbjct: 189 KIPKTIFNPRPAVDSAVVQFTRR-QPVRTARDEAQFFALVKGCFKQRRKTLYNNFREYLQ 247

Query: 245 ---GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
                  LL++AG+E +LRAE ++++ F  +  +  + + +
Sbjct: 248 DKDEATRLLNEAGLEPSLRAETMTLDQFLDLYEVTYETKSL 288


>gi|281412793|ref|YP_003346872.1| dimethyladenosine transferase [Thermotoga naphthophila RKU-10]
 gi|281373896|gb|ADA67458.1| dimethyladenosine transferase [Thermotoga naphthophila RKU-10]
          Length = 260

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 136/259 (52%), Gaps = 18/259 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  Y +  KK++GQ FL D  I K+I +++       V+EIGAG G LT+ L   GAR V
Sbjct: 7   LKKYGVRLKKHLGQVFLSDDRIAKRIVKAADLTPEDVVVEIGAGAGTLTEELAKTGAR-V 65

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           I  E D+   PIL++  S++PN +E+  +D LK       ++      ++N+PY+I   L
Sbjct: 66  IAYEIDESLAPILRERLSKYPN-VELRFEDFLKAK-----DVPEGAICVSNIPYSITGLL 119

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +   I    W   ++   ++ QKEVGERI A+     YG LSV+     +   +FD+S  
Sbjct: 120 MEKIIE---WK--FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P+P+V STV+       P+    E  KK     F K+RKTL+ +LK      L    
Sbjct: 175 CFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNLKPF----LSIFE 228

Query: 254 GIETNLRAENLSIEDFCRI 272
           G++ + RAE L++E+   +
Sbjct: 229 GVDLSRRAEQLTVEEIVEL 247


>gi|224025715|ref|ZP_03644081.1| hypothetical protein BACCOPRO_02456 [Bacteroides coprophilus DSM
           18228]
 gi|224018951|gb|EEF76949.1| hypothetical protein BACCOPRO_02456 [Bacteroides coprophilus DSM
           18228]
          Length = 265

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 131/257 (50%), Gaps = 8/257 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA +  +   + ++E+G G G LTQ L+T   R + V+E 
Sbjct: 4   VKPKKFLGQHFLKDLQVAQDIANTVDACPELPILEVGPGMGVLTQFLMT-KERPLKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      N   II+ D LK+D  + F    P  +  N PYNI +++ F  +
Sbjct: 63  DFESVAYLRENFPALGNN--IIEQDFLKMDLAQLFE-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ER+ A   S  YG LSVL     +   +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERMAAGPGSKTYGILSVLIQAWYRVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K+I +  F +RRKTLR S+  +  +     A    
Sbjct: 177 PKVKSAVIRMTRNETQELGCNEKLFKQIVKTTFNQRRKTLRNSISPILDKTNPLMADPIF 236

Query: 258 NLRAENLSIEDFCRITN 274
           N R E LS+++F  +TN
Sbjct: 237 NKRPEQLSVQEFIDLTN 253


>gi|160943226|ref|ZP_02090462.1| hypothetical protein FAEPRAM212_00712 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445465|gb|EDP22468.1| hypothetical protein FAEPRAM212_00712 [Faecalibacterium prausnitzii
           M21/2]
          Length = 311

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 141/284 (49%), Gaps = 28/284 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +   Y     K  GQNF+++  I  KI ++SG      VIEIG G G LT+ L    
Sbjct: 38  IRALCEKYDFALSKGFGQNFIINPGIPTKIVDASGVDKRYGVIEIGPGIGVLTKELAKRA 97

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124
           A KV+ IE D++  P+L +  +   N  +++  D LKVD      E+F  +  P+ + AN
Sbjct: 98  A-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM--PVAVCAN 153

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I + ++   +  D  P   ESLT++ QKE  +R+ A   +     +S    +   +
Sbjct: 154 LPYYITSPIVMKLLG-DRLP--IESLTVMVQKEAADRLAAVPGTRASSAISCAVNYYATS 210

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQS 240
            +MF  +P  F+P+PKVTS V+     + P P            + + AFG+RRKT   +
Sbjct: 211 KLMFTAAPGSFYPAPKVTSAVVRM--DIRPTPAVQVEDEAGYFALVRAAFGQRRKTAANA 268

Query: 241 LKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
           +   GG NL        +  AG +  +R E L++EDF +I   L
Sbjct: 269 IA--GGLNLPKEKVIAAIESAGFDARIRPEALTLEDFAKIQQAL 310


>gi|195326894|ref|XP_002030159.1| GM25292 [Drosophila sechellia]
 gi|194119102|gb|EDW41145.1| GM25292 [Drosophila sechellia]
          Length = 414

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 151/292 (51%), Gaps = 23/292 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67
           +++ ++  Y++  +K + QNFL+D  +  KI +S+G +D    V+E+G GPG +T+ +L 
Sbjct: 104 TIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPKDLVLEVGPGPGGITRSILR 163

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
              ++++++EKD +F     +LK+ +S    + +I  DD L+ + E+   + S  I +I 
Sbjct: 164 RHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIHLIG 223

Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           NLP+ I TRLL NW+   A     F      +TL FQ+EV ERI A        RLSV++
Sbjct: 224 NLPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMS 283

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235
              T+  M F I    F P P+V   V+  IP   P   +P  L  ++++ +  F  R+K
Sbjct: 284 QVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHL--VERVVRHIFSMRQK 341

Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             R+    L          + L  +A ++  LR   L++E   R+  + +++
Sbjct: 342 YCRRGYGTLLPPEDREEVAQKLFERAEVQDTLRPFELTVEQCLRLAEVYSEH 393


>gi|228471196|ref|ZP_04056009.1| dimethyladenosine transferase [Porphyromonas uenonis 60-3]
 gi|228307011|gb|EEK16093.1| dimethyladenosine transferase [Porphyromonas uenonis 60-3]
          Length = 271

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 128/257 (49%), Gaps = 11/257 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KKY+GQ+FL DL   ++IA+S     G  ++E+G G G LTQ LL  G   + VI+ D +
Sbjct: 7   KKYLGQHFLTDLGAAQRIADSVADYLGTPILEVGPGMGVLTQPLLEAG-HDLQVIDIDHE 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIGTRLLFNWIS 139
               L     Q      II+ D LK+  E+       +P  +I N PYNI +++ F  + 
Sbjct: 66  SIEYLHQHFPQLSQEGRIIEGDFLKLPAEELIPGRADTPFVVIGNYPYNISSQIFFRILE 125

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P   ++  + Q EV +R+ A      YG LSVL         +F +S   F P P
Sbjct: 126 LRERIP---AVAGMLQHEVAQRLCASPGGRDYGILSVLLQCWYDCDYLFKVSKRDFNPPP 182

Query: 200 KVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           KV   V+  I   N    +PC   + K++ + AFG+RRK LR +L+ L G+   +     
Sbjct: 183 KVDGGVM--IARRNGRTSLPCDETNFKRVVKTAFGQRRKMLRNALQSLFGKEFPYADHDI 240

Query: 257 TNLRAENLSIEDFCRIT 273
             LRAE LS+EDF  +T
Sbjct: 241 FTLRAERLSVEDFIGLT 257


>gi|261363715|ref|ZP_05976598.1| dimethyladenosine transferase [Neisseria mucosa ATCC 25996]
 gi|288568281|gb|EFC89841.1| dimethyladenosine transferase [Neisseria mucosa ATCC 25996]
          Length = 259

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 133/262 (50%), Gaps = 19/262 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L   L +  VI I++D 
Sbjct: 7   RKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNSLHVIEIDRD- 65

Query: 81  QFFPILKDISS-QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-- 137
               I++ + +    ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    
Sbjct: 66  ----IVRRLKTLPFADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAE 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++ D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P
Sbjct: 119 VADDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDP 173

Query: 198 SPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G+  L   GI
Sbjct: 174 APKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDEDLQAVGI 233

Query: 256 ETNLRAENLSIEDFCRITNILT 277
               RAE+++ E +  ++N L 
Sbjct: 234 SPQDRAEHIAPEKYVELSNYLV 255


>gi|218767820|ref|YP_002342332.1| dimethyladenosine transferase [Neisseria meningitidis Z2491]
 gi|254804581|ref|YP_003082802.1| dimethyladenosine transferase [Neisseria meningitidis alpha14]
 gi|27151604|sp|Q9JVC2|RSMA_NEIMA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|121051828|emb|CAM08134.1| putative dimethyladenosine transferase [Neisseria meningitidis
           Z2491]
 gi|254668123|emb|CBA04707.1| dimethyladenosine transferase [Neisseria meningitidis alpha14]
 gi|319410070|emb|CBY90404.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase; 16S rRNA
           dimethylase; high level kasugamycin resistance protein
           KsgA; kasugamycin dimethyltransferase) [Neisseria
           meningitidis WUE 2594]
          Length = 259

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 131/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV +R+ A   S  YGRL V+  +     M+ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|238752274|ref|ZP_04613754.1| Dimethyladenosine transferase [Yersinia rohdei ATCC 43380]
 gi|238709542|gb|EEQ01780.1| Dimethyladenosine transferase [Yersinia rohdei ATCC 43380]
          Length = 222

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 15/210 (7%)

Query: 75  VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIG 130
           VIE D+     L    + HP   ++L I Q+DA+K++F +       P+R+  NLPYNI 
Sbjct: 14  VIELDRDLAARL----ASHPQLKDKLTIHQEDAMKINFSELAEQAGQPLRVFGNLPYNIS 69

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T L+F+      +      +  + QKEV  R+ A  NS  YGRL+V+  +      + ++
Sbjct: 70  TPLMFHLFG---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLEV 126

Query: 191 SPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            P  F P+PKV S V+  IPH+   NP+   +  L +IT +AF +RRKT+R SL  L   
Sbjct: 127 PPTAFTPAPKVDSAVVRLIPHVQMPNPV-GDVRMLSRITTQAFNQRRKTVRNSLGDLFTA 185

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 186 EQLIELGIDPILRAENISVAQYCKLANWLS 215


>gi|188996789|ref|YP_001931040.1| dimethyladenosine transferase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|254807892|sp|B2V963|RSMA_SULSY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|188931856|gb|ACD66486.1| dimethyladenosine transferase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 258

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 132/262 (50%), Gaps = 8/262 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI PKK +GQ+FL+  N+++KI +         ++EIG G G LT+ +L    + +  IE
Sbjct: 3   KIKPKKRLGQHFLISKNVIEKIVDEINISKEDIIVEIGPGTGALTEEILLRNPKILYAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D    P+L++  S + N  ++I+ D   V+  +  +    I+++ NLPYN+ + ++   
Sbjct: 63  IDTSVHPVLEEKFSIYSN-FKLIKSDFFDVNLYELISDEEKIKLVGNLPYNVASLMI--- 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         E    + QKEV E++ A+  +  Y  LSV          +  +    F P
Sbjct: 119 IDCAFKLDILEFCVFMIQKEVAEKLIAKPKTKDYTFLSVFIQTFFDIKYVMSVPARFFNP 178

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            PKVTS V+   P  N     ++  K      F  RRK ++  ++    E +L++AGI  
Sbjct: 179 PPKVTSAVVKLTPKQNIAINNVKKYKNFISHLFQNRRKMIKSKIE----EEMLNKAGISP 234

Query: 258 NLRAENLSIEDFCRITNILTDN 279
           NLRAE LS+EDF RI  ++ ++
Sbjct: 235 NLRAEELSVEDFIRIFGVVEND 256


>gi|222152162|ref|YP_002561322.1| dimethyladenosine transferase [Macrococcus caseolyticus JCSC5402]
 gi|254807873|sp|B9E8V8|RSMA_MACCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|222121291|dbj|BAH18626.1| dimethyladenosine transferase [Macrococcus caseolyticus JCSC5402]
          Length = 296

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 147/279 (52%), Gaps = 20/279 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  Y    KK +GQNFL+D N+++ I E++G      VIEIG G G+LT+ L    A
Sbjct: 13  KQLLDQYGFKFKKSLGQNFLVDTNVIRNIIEAAGIDKTSGVIEIGPGMGSLTEQLAK-HA 71

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLP 126
           ++V+  E DQ+  PIL +  S + N + +I +D LK D     E + +    I ++ANLP
Sbjct: 72  KQVLAFEIDQRLIPILGETLSPYDN-VTVINEDILKADVASAIETYLHHCDEIFVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L   +  +       S  ++ QKEVGER++A  ++  YG LS+   + T    
Sbjct: 131 YYITTPILMGLLEKNLN---INSYVVMMQKEVGERLSAIPSTKAYGSLSIAVQYYTDVKR 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRL 244
           +  +   VF P P V S V+       P +    E+L  K+T+ AF +RRKT+  +   L
Sbjct: 188 IMVVPKGVFMPPPNVDSLVVKLTTLERPRVDVEDENLFFKLTRGAFVQRRKTILNNYMSL 247

Query: 245 GGENLLHQ---------AGIETNLRAENLSIEDFCRITN 274
             ++  H+         +G+  + R E+L++ D+ +++N
Sbjct: 248 IQDSKEHKSRIIEWLEASGVAPSRRGESLNLNDYAQLSN 286


>gi|219685175|ref|ZP_03539995.1| dimethyladenosine transferase [Borrelia garinii Far04]
 gi|219673271|gb|EED30290.1| dimethyladenosine transferase [Borrelia garinii Far04]
          Length = 281

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 150/287 (52%), Gaps = 24/287 (8%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           ++MN   N   S+K IL   KI P+K  GQN+L++ NI +KI ES    +   + EIG G
Sbjct: 6   LSMNINYNSITSIKQILKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPG 65

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G +T +LL      +   E D ++  IL +   +  N  ++I+ D LK    K+ N + 
Sbjct: 66  LGAMTDILLK-KTNFLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYPNENK 119

Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            I +I +NLPYNI ++++   I  +    F + + L  QKE+ +RITA+ NS +Y   +V
Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           L      A  + DI    F+P+PKV ST +  IP  N I    E   K+ +  F  RRK 
Sbjct: 176 LVQSHFTAIKIIDIGESNFYPAPKVKSTTLKLIPKKNNIKDFKE-FNKLIRTVFSSRRKK 234

Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L+ ++      K +  EN L +       R EN+S+E+F +I+N LT
Sbjct: 235 LKNTIINFIKNKAILEENFLKEY---LGKRPENISVEEFIQISNTLT 278


>gi|114778951|ref|ZP_01453742.1| dimethyladenosine transferase [Mariprofundus ferrooxydans PV-1]
 gi|114550823|gb|EAU53391.1| dimethyladenosine transferase [Mariprofundus ferrooxydans PV-1]
          Length = 265

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 124/259 (47%), Gaps = 11/259 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK +GQ+FL+D   +++IA   G++D G  +IEIG GPG +T++LL   A  + VIE D 
Sbjct: 17  KKALGQHFLMDQQAIRRIA---GAIDDGADIIEIGPGPGAITEVLLAR-ASHLTVIEMDD 72

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +F    +  +  HP  L ++  D +KV  E       P  I  NLPYN+   L       
Sbjct: 73  RFAARWQQHARSHPT-LSVVHGDVMKV-LEATVADKQPQWIAGNLPYNLSGPLTATLAGI 130

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P    + L++Q+EV ERI A   S  YG LSVL         +  + P  F P PK
Sbjct: 131 ----PLSGGMVLMYQREVAERICAGPGSKTYGGLSVLVRHFYDVKRLLTLPPGAFSPPPK 186

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           V S V+   PH    PC    L++  ++ F  RRKT+  + + +   +      I   LR
Sbjct: 187 VHSAVVVLTPHHRTPPCDYSILQQTVRKGFAHRRKTIFNNFRGVLDADAFTAIDINPGLR 246

Query: 261 AENLSIEDFCRITNILTDN 279
            E L    + R+   L +N
Sbjct: 247 PEQLDYAAWARLALRLQNN 265


>gi|167629323|ref|YP_001679822.1| dimethyladenosine transferase [Heliobacterium modesticaldum Ice1]
 gi|167592063|gb|ABZ83811.1| dimethyladenosine transferase [Heliobacterium modesticaldum Ice1]
          Length = 285

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 143/290 (49%), Gaps = 30/290 (10%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  L+  LS Y I  KK +GQNFL D   + +I  ++    G  V+EIG GP  LT+ L 
Sbjct: 2   AGELRQNLSRYGIRAKKGLGQNFLSDPVYVGRIIAAAELAAGDVVVEIGPGPATLTRDLA 61

Query: 67  -TLG-ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRI 121
             +G   KVI +E D++  P+L D+   +P  +EI+  DAL+VD++     +    P  +
Sbjct: 62  EAVGPGGKVIAVEVDERLRPLLDDLCRDYPQ-VEILWQDALQVDYDAATQPWRGDKPFVL 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWES-LTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +ANLPY I T +L   +       F  S L ++ QKEV +R+ A      YG LSV+  +
Sbjct: 121 VANLPYYITTPILMRLLEGR----FSVSRLVVMVQKEVADRMLAPAGHSDYGALSVVIQY 176

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKT-- 236
               +++  + P  F P PKV+S V+       P    ++     ++ + AF +RRKT  
Sbjct: 177 YCAPSLVTKVPPGAFIPPPKVSSAVVRLDRRATPPVAVVDEAAFFRVVRAAFNQRRKTLL 236

Query: 237 ----------LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                      ++ + R      L  AG++   R E L++++F  + + L
Sbjct: 237 NALGALGLALNKEEMAR-----RLTAAGVDPGRRGETLNLQEFANVADAL 281


>gi|71901524|ref|ZP_00683609.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1]
 gi|71728711|gb|EAO30857.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1]
          Length = 297

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 133/273 (48%), Gaps = 12/273 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           +SH +++ L  +    KK  GQ+FL+D   + +I           ++EIG G G +T  L
Sbjct: 29  ESHGMESRL--FNTPAKKAFGQHFLVDRYYIDRIIHVINPQPNDHIVEIGPGQGAITLPL 86

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIAN 124
           L      +  IE D+     L   ++    +L+II  D LKVD        +  +R++ N
Sbjct: 87  LKCCG-SLTAIELDRDLIAPLTAAATPI-GKLDIIHSDVLKVDLSILAKQGNKKLRLVGN 144

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI + +LF+ +           +  + QKEV +R+ A   S  YGRLSV+     + 
Sbjct: 145 LPYNISSPILFHVLQQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEV 201

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSL 241
           T MF + P  F P PKV S +   +P  +P    +   K+   I + AFG+RRKTLR SL
Sbjct: 202 TTMFVVPPDAFQPPPKVNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSL 260

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
             +        AGI TN RAE L + +F  + N
Sbjct: 261 ADICTPAHFEHAGIRTNARAEQLEVTEFIALAN 293


>gi|139438654|ref|ZP_01772138.1| Hypothetical protein COLAER_01138 [Collinsella aerofaciens ATCC
           25986]
 gi|133775734|gb|EBA39554.1| Hypothetical protein COLAER_01138 [Collinsella aerofaciens ATCC
           25986]
          Length = 286

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 14/277 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           + + +L  + +  K  +GQNFL+D +++++I E +       V+E+G G G LT  LL  
Sbjct: 11  ATRELLEEFGLATKHRLGQNFLIDNHVIERICELAELAGDERVLEVGPGCGTLTLALLQE 70

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLP 126
            A  V  IE D +  P+L   ++ + N    I  DALKV  E+    +   P   +ANLP
Sbjct: 71  AA-CVTSIEADPELEPVLDAHAADYAN-FRFIMGDALKVGPEQIEQAAGGEPTVFVANLP 128

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YN+   ++  +    T P    ++ ++ QKEV +RI A   +  YG  +   G   + T 
Sbjct: 129 YNVAATIILQFFQ--TMPALKRAVVMV-QKEVADRIAAVPGNKTYGGYTAKLGLYAQVTG 185

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRL 244
            F++ P  F P+P V S V+        +P  L  E + ++   AF +RRKT+R S+   
Sbjct: 186 RFEVPPRCFMPAPHVDSAVVRIDRVDGVVPEGLDREFVARVIDAAFAQRRKTIRNSMSAN 245

Query: 245 G-GENLLHQA----GIETNLRAENLSIEDFCRITNIL 276
           G  +++L  A    GI    RAE L + DF R+   L
Sbjct: 246 GFAKDVLDAAIETCGIAPTTRAETLDVADFVRLAQEL 282


>gi|218258231|ref|ZP_03474633.1| hypothetical protein PRABACTJOHN_00287 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225574|gb|EEC98224.1| hypothetical protein PRABACTJOHN_00287 [Parabacteroides johnsonii
           DSM 18315]
          Length = 290

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/267 (35%), Positives = 134/267 (50%), Gaps = 23/267 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           PKK +GQ+FL DL I ++IA++      + V+EIG G G LTQ LL  G   + V+E D 
Sbjct: 35  PKKALGQHFLKDLQIAERIADTLSDYKQLPVLEIGPGMGVLTQFLLEKG-HDLTVVELDM 93

Query: 80  ------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                 +Q FP L+          +I+ +D L++D  K F       +I N PYNI +++
Sbjct: 94  ESVDYLEQNFPALEG---------KILAEDFLRLDLSKLF--PDQFCVIGNYPYNISSQI 142

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     + + QKEV ER+ A   S  YG LSVL     +   +F +S  
Sbjct: 143 FFKVLDYKEHIP---CCSGMIQKEVAERLAAGPGSKTYGILSVLLQAWYEVEYLFTVSEK 199

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           VF P PKV S VI  + +      C E L K + + +F +RRKTLR S+K L G++    
Sbjct: 200 VFDPPPKVKSAVIRMVRNNRKSLGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDY 259

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
                + R E LS+E F  +T I   N
Sbjct: 260 PLPIFDKRPEQLSVEQFVELTLITERN 286


>gi|325267670|ref|ZP_08134321.1| dimethyladenosine transferase [Kingella denitrificans ATCC 33394]
 gi|324980794|gb|EGC16455.1| dimethyladenosine transferase [Kingella denitrificans ATCC 33394]
          Length = 259

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 133/259 (51%), Gaps = 13/259 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L T   R++ V E D+ 
Sbjct: 8   RKRFGQNFLQDTRIITDIVNAVRPQPDDIVIEIGPGLAAITEPL-TRHLRQLHVCEIDRD 66

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK+      ++L I + D L+ DF    +I+   +I+ NLPYNI T LLF+    A
Sbjct: 67  IIRFLKE--QPFADKLVIHEGDVLQFDFG---SIAGRKKIVGNLPYNISTPLLFHLAEVA 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ AQ  +  YGRLSV+  +     M+ ++ P  F P+PK
Sbjct: 122 DEV----VDMHFMLQKEVVERMVAQPKTNDYGRLSVMLQYFFDMEMLIEVPPESFDPAPK 177

Query: 201 VTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  IP  N I    +      + ++AF +RRKT+R +LK +  +  L   GI   
Sbjct: 178 VDSAVVRMIPVPNRIGTAADFAHFSNLVRDAFHQRRKTIRNNLKGIADDEDLQAVGILPQ 237

Query: 259 LRAENLSIEDFCRITNILT 277
            RAE ++ E + R++N L 
Sbjct: 238 QRAEEIAPELYVRLSNHLV 256


>gi|257438823|ref|ZP_05614578.1| dimethyladenosine transferase [Faecalibacterium prausnitzii A2-165]
 gi|257198732|gb|EEU97016.1| dimethyladenosine transferase [Faecalibacterium prausnitzii A2-165]
          Length = 320

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 20/281 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +   Y     K  GQNF+++  +  KI ++SG      V+EIG G G LT+ L    
Sbjct: 46  VRALCEKYDFALSKGFGQNFIVNPGLPPKIVDASGVDKRYGVLEIGPGIGVLTRELAKRA 105

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLP 126
           A KV+ IE D++  P+L +  +   N  +++  D LKVD +          P+ + ANLP
Sbjct: 106 A-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAQEFPGMPVAVCANLP 163

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I + ++   +  D  P   ESLT++ QKE  +R+ A   +     +S    +   + M
Sbjct: 164 YYITSPIVMKLLG-DRLP--IESLTVMVQKEAADRLAAAPGTRASSAISCAVSYYATSKM 220

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLK 242
           MF  +P  F+P+PKVTS V+     + P P       E    + + AFG+RRKT   ++ 
Sbjct: 221 MFTAAPGSFYPAPKVTSAVVRM--EIRPTPAVQVEDEEGYFALVRAAFGQRRKTAANAIA 278

Query: 243 RLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
              G         +  AG +  +R E L++EDF +I + L 
Sbjct: 279 SGLGMPKDAVTAAIEAAGFDARIRPEALTLEDFAKIQSALA 319


>gi|194097992|ref|YP_002001040.1| dimethyladenosine transferase [Neisseria gonorrhoeae NCCP11945]
 gi|239998459|ref|ZP_04718383.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02]
 gi|240013584|ref|ZP_04720497.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI18]
 gi|240080164|ref|ZP_04724707.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19]
 gi|240115118|ref|ZP_04729180.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID18]
 gi|240117401|ref|ZP_04731463.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID1]
 gi|240120653|ref|ZP_04733615.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID24-1]
 gi|240122958|ref|ZP_04735914.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID332]
 gi|240125209|ref|ZP_04738095.1| dimethyladenosine transferase [Neisseria gonorrhoeae SK-92-679]
 gi|240127664|ref|ZP_04740325.1| dimethyladenosine transferase [Neisseria gonorrhoeae SK-93-1035]
 gi|260441065|ref|ZP_05794881.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2]
 gi|268594320|ref|ZP_06128487.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02]
 gi|268596315|ref|ZP_06130482.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19]
 gi|268600793|ref|ZP_06134960.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID18]
 gi|268603098|ref|ZP_06137265.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID1]
 gi|268681579|ref|ZP_06148441.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID332]
 gi|268683807|ref|ZP_06150669.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae SK-92-679]
 gi|268686049|ref|ZP_06152911.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291044398|ref|ZP_06570107.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2]
 gi|226732603|sp|B4RJV5|RSMA_NEIG2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|193933282|gb|ACF29106.1| putative dimethyladenosine transferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|212278025|gb|ACJ23027.1| KsgA [Neisseria gonorrhoeae]
 gi|212278027|gb|ACJ23028.1| KsgA [Neisseria gonorrhoeae]
 gi|212278029|gb|ACJ23029.1| KsgA [Neisseria gonorrhoeae]
 gi|212278031|gb|ACJ23030.1| KsgA [Neisseria gonorrhoeae]
 gi|212278033|gb|ACJ23031.1| KsgA [Neisseria gonorrhoeae]
 gi|212278035|gb|ACJ23032.1| KsgA [Neisseria gonorrhoeae]
 gi|212278039|gb|ACJ23034.1| KsgA [Neisseria gonorrhoeae]
 gi|212278041|gb|ACJ23035.1| KsgA [Neisseria gonorrhoeae]
 gi|212278043|gb|ACJ23036.1| KsgA [Neisseria gonorrhoeae]
 gi|212278045|gb|ACJ23037.1| KsgA [Neisseria gonorrhoeae]
 gi|212278047|gb|ACJ23038.1| KsgA [Neisseria gonorrhoeae]
 gi|212278049|gb|ACJ23039.1| KsgA [Neisseria gonorrhoeae]
 gi|212278051|gb|ACJ23040.1| KsgA [Neisseria gonorrhoeae]
 gi|212278053|gb|ACJ23041.1| KsgA [Neisseria gonorrhoeae]
 gi|212278055|gb|ACJ23042.1| KsgA [Neisseria gonorrhoeae]
 gi|212278057|gb|ACJ23043.1| KsgA [Neisseria gonorrhoeae]
 gi|212278059|gb|ACJ23044.1| KsgA [Neisseria gonorrhoeae]
 gi|212278061|gb|ACJ23045.1| KsgA [Neisseria gonorrhoeae]
 gi|212278063|gb|ACJ23046.1| KsgA [Neisseria gonorrhoeae]
 gi|212278065|gb|ACJ23047.1| KsgA [Neisseria gonorrhoeae]
 gi|212278067|gb|ACJ23048.1| KsgA [Neisseria gonorrhoeae]
 gi|268547709|gb|EEZ43127.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02]
 gi|268550103|gb|EEZ45122.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19]
 gi|268584924|gb|EEZ49600.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID18]
 gi|268587229|gb|EEZ51905.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID1]
 gi|268621863|gb|EEZ54263.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID332]
 gi|268624091|gb|EEZ56491.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae SK-92-679]
 gi|268626333|gb|EEZ58733.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291011292|gb|EFE03288.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2]
 gi|317163741|gb|ADV07282.1| dimethyladenosine transferase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 259

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 130/260 (50%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+PK
Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 177 IDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236

Query: 259 LRAENLSIEDFCRITNILTD 278
            RAE+++ E +  ++N L D
Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256


>gi|332877785|ref|ZP_08445524.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684250|gb|EGJ57108.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 277

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 131/257 (50%), Gaps = 12/257 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL I + IA++  +  GI V+E+G G G +TQ L+    R + V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKIAQDIADTVDACPGIPVLEVGPGMGVMTQFLVR-KDRPLKVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D   F  +  + + +P   E II+DD LK+  E+ F    P  +  N PYNI +++ F  
Sbjct: 63  D---FESVAYLRTHYPQLEENIIEDDFLKMHLERTFG-GQPFVLTGNYPYNISSQIFFKM 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P     T + QKEV ERI A   S  YG LSVL         +F +  HVF P
Sbjct: 119 LDYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLLQAWYSVEYLFTVHEHVFNP 175

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254
            PKV S VI    +      C E L K++ +  F +RRK LR S++ +    ++ + Q G
Sbjct: 176 PPKVKSAVIRMTRNATTDLGCDERLFKQVVKTTFNQRRKVLRNSIRPVLADADHKVQQEG 235

Query: 255 IETNLRAENLSIEDFCR 271
                  E LS E F R
Sbjct: 236 RLPKDHTEFLSAEIFGR 252


>gi|195128817|ref|XP_002008857.1| GI13722 [Drosophila mojavensis]
 gi|193920466|gb|EDW19333.1| GI13722 [Drosophila mojavensis]
          Length = 413

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 151/292 (51%), Gaps = 23/292 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLT 67
           S++ ++  YK+   K + QNFL+D  +  KI +S+G +D    V+E+G GPG +T+ +L 
Sbjct: 104 SIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDHNDIVLEVGPGPGGITRSILR 163

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
              ++++++EKD +F     +L++ +      +EI  +D L+ + E+   + +  + +I 
Sbjct: 164 RQPQRLLLVEKDARFTETLQLLRECARPLDMEVEIYHEDILRFNIEQHVPDTTQRLHLIG 223

Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           NLP+ I TRLL NW    +     F  +   +TL FQKEV ERI AQ  S    RLSV++
Sbjct: 224 NLPFAISTRLLINWFDDLSRRRGAFRRNDTCMTLTFQKEVAERICAQVGSEQRCRLSVMS 283

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235
              T+  + F I    F P P+V   V+  IP   P   +P  L  ++++ +  F  R+K
Sbjct: 284 QIWTEPVLKFIIPGKAFVPKPQVDVGVVKVIPLKRPKTELPFPL--VERVVRHIFSMRQK 341

Query: 236 TLRQSLKRL----GGEN----LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             R+    L    G E     L  +A ++  +R   LS+ +  R+ +   D+
Sbjct: 342 YCRRGYSTLLPPEGREETTQALFQRADVKDTMRPFELSVAECLRLADAYADH 393


>gi|262341205|ref|YP_003284060.1| dimethyladenosine transferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272542|gb|ACY40450.1| dimethyladenosine transferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 259

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 134/257 (52%), Gaps = 8/257 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           +K I +K   Q FL D NI KKI ++   L+  TV+EIG G G LTQ LL     +V +I
Sbjct: 4   HKSIFRKKFDQYFLKDKNIAKKIVKNLSFLNYDTVVEIGPGLGILTQYLLKHHQNQVFLI 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D++    L++  S   NR  II  D LK   E+         II N PY+I +++LF+
Sbjct: 64  EIDRELISFLRNKFSISKNR--IIHKDFLKWSPEEIH--LQNFAIIGNFPYSISSQILFH 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +  + + P       +FQKEV +RI + +   +YG LSVL     +   +F ++P VFF
Sbjct: 120 ILKYNQYIP---ECIGMFQKEVAKRIASHEGKKNYGILSVLVQTFYEVKYLFTVNPQVFF 176

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P V S V+        + C  + L K  + AF +RRK L+ SL+        ++    
Sbjct: 177 PIPNVKSAVLSLRKKNEILSCNKDLLFKCVKTAFNQRRKKLKNSLQLFNHIPNFYKIPF- 235

Query: 257 TNLRAENLSIEDFCRIT 273
            N RAE LS+++F ++T
Sbjct: 236 LNKRAEELSVQEFLQLT 252


>gi|323701639|ref|ZP_08113311.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM
           574]
 gi|323533412|gb|EGB23279.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM
           574]
          Length = 296

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  +    +K +GQNFL+D NI+ KI  ++   +     EIG G G LT+ L   
Sbjct: 9   TVREIIKAHGFKVRKALGQNFLMDANIIDKIVRAANLSENDLAFEIGPGLGVLTRRLAQE 68

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK---------FFNISSPI 119
             R V+ +E DQ   PIL +  +  P + E+IQ DA KVDF++         F       
Sbjct: 69  AGR-VLAVEIDQNLLPILNETLADLP-KAEVIQADARKVDFDQLAAERTQGQFGPGGKAY 126

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T LL + +++       E L ++ QKEV +R+ A      YG LSV+  
Sbjct: 127 KLVANLPYYITTPLLLHLLTSGF---NLELLVVMIQKEVADRLQASPGGKDYGSLSVVVQ 183

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRK 235
           + T   ++  +   VF+P P V S VI       P+P       E+  K+ + AFG+RRK
Sbjct: 184 YYTVPEIVCKVPKTVFYPVPDVDSAVIRLTRR--PVPPVQLRNEETFFKVVRAAFGQRRK 241

Query: 236 TLRQSLKRLGGE------NLLHQAGIETNLRAENLSIEDFCRITN 274
           TL  +L   G        ++L++ G++   R E LS+E+F  + N
Sbjct: 242 TLINALTGSGLASKETWLSVLNETGLDPARRGETLSLEEFAALAN 286


>gi|289209141|ref|YP_003461207.1| dimethyladenosine transferase [Thioalkalivibrio sp. K90mix]
 gi|288944772|gb|ADC72471.1| dimethyladenosine transferase [Thioalkalivibrio sp. K90mix]
          Length = 263

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 126/262 (48%), Gaps = 15/262 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  +L +I  +        V+EIG G G LT  LL     +++ +E D+ 
Sbjct: 9   RKRFGQNFLHDQAVLARIVGAIAPRPDDPVLEIGPGRGALTGALLER-LNRLVAVEIDRD 67

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLLFNW 137
               L+  ++  P RLE+   DAL +D     ++  P     R++ NLPYNI T LLF+ 
Sbjct: 68  LVAGLR--AAFAPERLELHVGDALDLDLA---SLGPPPEGGWRVVGNLPYNISTPLLFHL 122

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +           +  L Q+EV ER+TA   S  YGRL+V+   R +A  +F + P  F P
Sbjct: 123 LDQMEA---VRDMHFLLQREVVERMTAVPGSKTYGRLTVMLAARARAQSLFGVPPGAFHP 179

Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S V+   P   P+          K+  +AF  RRKTLR+ L  L     +  A +
Sbjct: 180 PPKVHSAVVRITPLEAPLVDSALYPVFAKVVNQAFSSRRKTLRRGLSGLVDAARIEAAQL 239

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +   R E + +  F  +  ++ 
Sbjct: 240 DPGARPETVDVHGFAALARMVA 261


>gi|162452719|ref|YP_001615086.1| dimethyladenosine transferase [Sorangium cellulosum 'So ce 56']
 gi|161163301|emb|CAN94606.1| dimethyladenosine transferase [Sorangium cellulosum 'So ce 56']
          Length = 276

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/274 (33%), Positives = 134/274 (48%), Gaps = 13/274 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  +L    + PKK  GQNFL+D++  ++IAE++ + +G  VIEIGAG G LT+ LL  
Sbjct: 2   AIAELLRTRGLSPKKGFGQNFLVDVDAARRIAEAATTTEGGAVIEIGAGLGALTRPLLDR 61

Query: 69  GARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANL 125
            A  V+ IE+D+   PIL++         RL +++ DA +VD+       + P  +  NL
Sbjct: 62  -ATHVVAIERDRDLVPILREQLAGPIEEGRLTLLEADAAQVDWVGALSGHARPHAVAGNL 120

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY+I  RLL     A T     +    + Q EV +R+ A   S  YG LSV         
Sbjct: 121 PYHITGRLLEQ---ATTVAHQIDRAVFMVQLEVADRLVAAPGSADYGALSVFVQAAFDVR 177

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            +       F+P P+V S V+   P         ++ +   + AF  RRKTLR + K L 
Sbjct: 178 RLLIARAGAFYPRPEVDSAVVVLTPWRPRRAEETDAFRAAVRAAFSARRKTLRNAWKNLY 237

Query: 246 G------ENLLHQAGIETNLRAENLSIEDFCRIT 273
           G      E     AGI  + R E LS+E F RI 
Sbjct: 238 GWSSQELERHAKDAGISLDARGETLSVEAFARIA 271


>gi|257455041|ref|ZP_05620285.1| dimethyladenosine transferase [Enhydrobacter aerosaccus SK60]
 gi|257447554|gb|EEV22553.1| dimethyladenosine transferase [Enhydrobacter aerosaccus SK60]
          Length = 289

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 143/289 (49%), Gaps = 25/289 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++   LSH    P+K  GQNFL D  I+ +I +S  +     ++EIG G G +T+ LL  
Sbjct: 2   TVSAFLSHQ---PRKRFGQNFLHDQVIIGRIIDSIHAGRDDLMVEIGPGMGAITEPLLK- 57

Query: 69  GARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFN----------ISS 117
              ++ V+E D      L+  I +   + L I++ +A++VD+   F              
Sbjct: 58  EVNRLTVVELDTDLADSLRIRIGANSNDGLTIVKANAMEVDYRALFQQIIGDYPNDTTDK 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            +RI+ NLPYNI T LLF+ +S   +    E +  + QKEV +RITA  +S  YGRLS++
Sbjct: 118 KMRIVGNLPYNISTPLLFHLLS---FADVIEDMHFMLQKEVVDRITAAVDSREYGRLSIM 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRK 235
             +  +   +  +    F P PKVTS V    P+   PI    E L   + +EAF  RRK
Sbjct: 175 MQYYCETDYLLTVPNGAFNPPPKVTSAVFRLRPYQQKPIVADDEKLFALVVREAFNHRRK 234

Query: 236 TLRQSLKR-----LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           TLR   K+        E+ L   G+    R E LS++DF  + N +  N
Sbjct: 235 TLRAIFKKSPILPAVTEHQLVAWGLNPLARPETLSVQDFVTLANGIAAN 283


>gi|15612620|ref|NP_240923.1| dimethyladenosine transferase [Bacillus halodurans C-125]
 gi|27151607|sp|Q9KGK4|RSMA_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|10172669|dbj|BAB03776.1| dimethyladenosine transferase [Bacillus halodurans C-125]
          Length = 289

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 140/280 (50%), Gaps = 19/280 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL+ +    KK +GQNFL+D N+L+ I + +        IEIG G G LT+  L   A
Sbjct: 12  KEILAKHGFTFKKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQ-LARQA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           ++V+  E DQ+  P+L++  + + N + +I +D LK D ++     F     + ++ANLP
Sbjct: 71  KRVVAFEIDQRLIPVLRETLAPYEN-VTVINEDVLKADVKQVIATTFEEGQDLMVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T +L   + A   P     + ++ Q EV +RI A+  +  YG LS+   +   A +
Sbjct: 130 YYVTTPILMKLLEAK-LP--VRGIVVMIQAEVADRIAAKPGTKEYGSLSIAAQYYATAEL 186

Query: 187 MFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL--- 241
              +   VF P P V S V+   I    P+    E  L  I + +F  RRKT+  +L   
Sbjct: 187 AVKVPKTVFVPQPNVDSAVLRLTIREKPPVTVADEEWLFAIVRASFANRRKTILNNLIHN 246

Query: 242 -----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                ++      L +AGI+ + R E L+IE+F  ++  L
Sbjct: 247 LVGKERKDKAVQALAEAGIDPSRRGETLTIEEFANLSEQL 286


>gi|226355955|ref|YP_002785695.1| dimethyladenosine transferase [Deinococcus deserti VCD115]
 gi|226317945|gb|ACO45941.1| putative dimethyladenosine transferase [Deinococcus deserti VCD115]
          Length = 292

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/276 (34%), Positives = 147/276 (53%), Gaps = 21/276 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+  G  ++E+G G G LT+ + + G
Sbjct: 28  VRELLNRHGLRPTKSLGQNFLIDGNILRAIAEAGGAQAGARILEVGPGLGVLTREIASRG 87

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  +EKD++  P L +  +     +E+I  DAL  D+    ++    R+IANLPY I
Sbjct: 88  A-HVTALEKDERLRPALAETLAGL--DVELIWGDALDFDYA---SLPEGTRVIANLPYYI 141

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              LL  ++ A    P   S T+L QKEVG+R+ A+     YG LS L         + D
Sbjct: 142 TGVLLSRFMHA----PGIVSATVLVQKEVGQRLAARPGEDAYGFLSALAALHGSVRHVRD 197

Query: 190 ISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           +    F P+P VTS+VI        P P    +L K  + A   RRKTLR +L+ +G E 
Sbjct: 198 VPKGAFLPAPDVTSSVIRLDFDRSRPAPEA--ALLKFVEGALHHRRKTLRNNLRMIGHEG 255

Query: 249 -----LLHQAGIETNLRAENL---SIEDFCRITNIL 276
                 L  AG+  ++RAE++    +ED  R   ++
Sbjct: 256 PAIDAALIAAGLRPDVRAEDVPLSKLEDVARRLGVV 291


>gi|282883264|ref|ZP_06291862.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B]
 gi|281296894|gb|EFA89392.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B]
          Length = 288

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 142/278 (51%), Gaps = 24/278 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +  IL  Y     K +GQNFL+D NI++KI +S+   +   V+EIG G G LT+  
Sbjct: 6   KPKRVSEILKKYNFRFSKTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGTLTEE- 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRII 122
           L L A+KV+ IE D++   +L++  +   + ++II  D LK+D +   +        +++
Sbjct: 65  LALRAKKVVSIEIDKRLEDLLEE--TLPYDNVKIIYKDFLKLDLKTLIDEEFKGQNFKVV 122

Query: 123 ANLPYNIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ANLPY I T    +LL N  +        E + ++ QKEV +R TAQ  +  YG LSV  
Sbjct: 123 ANLPYYITTPIIEKLLLNSEN-------IEIINVMIQKEVAKRFTAQPQTKDYGSLSVFI 175

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            +  +A   F +   VF P P V S V       +      E   KI + AF KRRKTL 
Sbjct: 176 QFFCRAFYEFTVPRTVFMPKPNVDSGVCKLEVKRDLPNIDREEFFKIVRAAFSKRRKTLV 235

Query: 239 QSLK-------RLGGENLLHQAGIETNLRAENLSIEDF 269
            SL        +     +L  +GI+T  RAE+L++EDF
Sbjct: 236 NSLSQSQLNLDKNKVTEILELSGIDTKRRAESLTLEDF 273


>gi|261380520|ref|ZP_05985093.1| dimethyladenosine transferase [Neisseria subflava NJ9703]
 gi|284796774|gb|EFC52121.1| dimethyladenosine transferase [Neisseria subflava NJ9703]
          Length = 259

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 131/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLAK-KLNRLHVCEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF    +I    +I+ NLPYNI T LLF    ++
Sbjct: 66  IVRRLKTLP--FADKLVIHEGDVLQFDFN---SIEGKKKIVGNLPYNISTPLLFRLSEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ AQ  +  YGRL V+  +     M+ ++ P  F P+P
Sbjct: 121 DDVI-----DMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAAEKYVALSNYLV 255


>gi|227501188|ref|ZP_03931237.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098]
 gi|227216589|gb|EEI81993.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098]
          Length = 280

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 136/271 (50%), Gaps = 13/271 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K I+  Y     K +GQNFL+D N ++KI + +   D   V+EIG G G +T  +    
Sbjct: 10  VKDIIDFYNFRFSKSLGQNFLVDKNFVEKIVDRADVKDT-NVLEIGPGIGTITYEMAK-S 67

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLP 126
           A+KV+ IE D    PI+++   +  N  ++I +D LK + EK           ++++NLP
Sbjct: 68  AKKVVAIEIDSALLPIIEENMEEFDN-FKLIHEDILKANLEKIVEEEFSGEAFKVVSNLP 126

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++   +++   P     +T++ QKEV +R+ A +    Y  LSV   + T+A  
Sbjct: 127 YYITTPIIEKLVTS-KLP--CTDMTIMVQKEVADRMLATEKDKEYSSLSVFIKYFTEAEK 183

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           + ++   VF P PK+ STV+               L  I    F KRRKT+  SL     
Sbjct: 184 ITNVPKSVFMPQPKIDSTVLKLKLRKYRDDVDESKLFAIVHAGFNKRRKTILNSLADAVD 243

Query: 247 ENLLHQA----GIETNLRAENLSIEDFCRIT 273
           +  L  A    GI   LRAENLS++DF  +T
Sbjct: 244 KEKLRLAFDKLGINEKLRAENLSLDDFIDLT 274


>gi|298369212|ref|ZP_06980530.1| dimethyladenosine transferase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283215|gb|EFI24702.1| dimethyladenosine transferase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 259

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 129/258 (50%), Gaps = 11/258 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ VIE D+ 
Sbjct: 7   RKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LK +     ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    A+
Sbjct: 66  IVGRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKL--AE 118

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 E +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+PKV
Sbjct: 119 VADDVVE-MHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPKV 177

Query: 202 TSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S V+  IP  + I      E   K+ + AF +RRKT+R +LK   G+  L   GI    
Sbjct: 178 DSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKEFAGDEDLQAVGISPQD 237

Query: 260 RAENLSIEDFCRITNILT 277
           RAE+++ E +  ++N L 
Sbjct: 238 RAEHIAPEKYVELSNYLV 255


>gi|238764652|ref|ZP_04625597.1| Dimethyladenosine transferase [Yersinia kristensenii ATCC 33638]
 gi|238697144|gb|EEP89916.1| Dimethyladenosine transferase [Yersinia kristensenii ATCC 33638]
          Length = 214

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 116/209 (55%), Gaps = 13/209 (6%)

Query: 75  VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIG 130
           VIE D+     L    + HP   ++L I Q+DA+K++F +        +R+  NLPYNI 
Sbjct: 6   VIELDRDLAARL----ASHPQLKDKLTIHQEDAMKINFSELAEQAGQSLRVFGNLPYNIS 61

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V+  +      + ++
Sbjct: 62  TPLMFHLFS---YTNAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLEV 118

Query: 191 SPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            P  F P+PKV S V+  IPH+N P P   +  L +IT +AF +RRKT+R SL  L    
Sbjct: 119 PPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITTQAFNQRRKTVRNSLGDLFTSE 178

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
            L + GI+  +RAEN+S+  +C++ N L+
Sbjct: 179 QLIELGIDPIMRAENISVAQYCKLANWLS 207


>gi|294789043|ref|ZP_06754283.1| dimethyladenosine transferase [Simonsiella muelleri ATCC 29453]
 gi|294483145|gb|EFG30832.1| dimethyladenosine transferase [Simonsiella muelleri ATCC 29453]
          Length = 258

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 131/258 (50%), Gaps = 11/258 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L T    ++ V E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDIVIEIGPGLAAITEPL-TRKLNQLHVCEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LK       N+L I   D L+ DF    +I    +I+ NLPYNI T LLF    AD
Sbjct: 66  IIQFLK--KQPFANKLVIHDGDVLQFDFR---SIVGKKKIVGNLPYNISTPLLFRL--AD 118

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +  + QKEV ER+ A   +  YGRLSV+  +     ++ ++ P  F P+PKV
Sbjct: 119 VADDVID-MHFMLQKEVVERMVAVPKTNDYGRLSVMLQYFFDMELLIEVPPESFDPAPKV 177

Query: 202 TSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S V+  IP LN I      +    + +++F +RRKT+R +LK +  ++ L   GIE   
Sbjct: 178 DSAVVRMIPVLNRIGKAENFKHFSDLVRDSFHQRRKTIRNNLKNIANDDDLLAVGIEPQQ 237

Query: 260 RAENLSIEDFCRITNILT 277
           RAE ++ E + +++N L 
Sbjct: 238 RAEEIAPELYVKLSNYLV 255


>gi|304382942|ref|ZP_07365424.1| dimethyladenosine transferase [Prevotella marshii DSM 16973]
 gi|304335967|gb|EFM02215.1| dimethyladenosine transferase [Prevotella marshii DSM 16973]
          Length = 280

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 146/279 (52%), Gaps = 29/279 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL+I ++IA++  +   + ++E+G G G LTQ L+T   R+V V+E D+
Sbjct: 6   PKKHLGQHFLTDLDIARRIADTVDACPRLPILEVGPGMGMLTQFLVT-KERQVRVVEIDR 64

Query: 81  Q-------FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           +        FP++ D         +I+++D L+++ +K FN   P  +  N PY+I +++
Sbjct: 65  EAATYLHKHFPLMHD---------DILREDFLRMNLQKVFN-GQPFVLTGNYPYDISSQI 114

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     T + Q+EV  R+ A + +  YG LSVL         +F +   
Sbjct: 115 FFKMLDNKDLIP---CCTGMIQREVALRMAATEGNKTYGILSVLMQAWYDVEYLFTVDET 171

Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           VF P PKV S VI    + +  + C     ++I +  FG+RRK LR SL+++        
Sbjct: 172 VFNPPPKVKSAVIRMTRNGVTDLGCDERLFRRIVKAVFGQRRKMLRVSLRQIFSSIPASP 231

Query: 253 AGIETNL---RAENLSIEDFCRITNI----LTDNQDIAI 284
           A  + ++   R E LSI  F  +TN+    L   +D+A+
Sbjct: 232 AFYDRDIMTRRPEQLSIPQFVELTNLVEAELRQLRDVAV 270


>gi|294669503|ref|ZP_06734570.1| hypothetical protein NEIELOOT_01401 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308416|gb|EFE49659.1| hypothetical protein NEIELOOT_01401 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 262

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 133/260 (51%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ VIE D+ 
Sbjct: 7   RKRFGQNFLQDTRIIADIVNAVRPQAEDVVIEIGPGLAAITEPLAK-KLNRLHVIEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF+   +I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVGRLKTLP--FADKLVIHEGDVLQFDFK---SIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFEPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I    +     K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFGHFAKVVKLAFHQRRKTIRNNLKELAGDDDLQAVGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVELSNYLV 255


>gi|300088594|ref|YP_003759116.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528327|gb|ADJ26795.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 306

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 150/290 (51%), Gaps = 20/290 (6%)

Query: 4   NNKSHSLKT----ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           N+ S S+KT    +L  + +  +K +GQNFL+D  +L KI  ++G     TV+E+G GPG
Sbjct: 25  NSDSVSIKTEVRRLLDSHGLSARKGLGQNFLIDRGVLDKIVRAAGIETADTVVEVGPGPG 84

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T  L    A +VI +E D      L++   Q  N +++I  D L +   +    +SP 
Sbjct: 85  VMTAALAE-KAGQVIAVELDFGMVAALRETVGQRSN-VKVIAGDILDISPSELTG-ASPY 141

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I + +L +++ A   P    SLT++ QKEV  +ITAQ   P    L++   
Sbjct: 142 KVVANLPYYITSPVLRHFLEASHRP---SSLTVMVQKEVARQITAQ--PPEMSLLALGVQ 196

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           +  +  ++  +    F+P+PKV S ++H    P     P   +   ++ +  FG RRK L
Sbjct: 197 FFGRPRVVSYVPAGCFYPAPKVASAILHIEVFPERKLPPKQEKGFFRLARAGFGTRRKQL 256

Query: 238 RQSLK-RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             +L   LG +       L QAGI    RAE LSI+++  +  + + + D
Sbjct: 257 ANALSGGLGADKANVIQYLKQAGIVPERRAETLSIDEWLALREVWSFDDD 306


>gi|313891618|ref|ZP_07825225.1| dimethyladenosine transferase [Dialister microaerophilus UPII
           345-E]
 gi|313119896|gb|EFR43081.1| dimethyladenosine transferase [Dialister microaerophilus UPII
           345-E]
          Length = 284

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 138/270 (51%), Gaps = 15/270 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           ++  + I  K  +GQNFL+  +I+K+IA ++   +   V+EIG+G G LTQ L   GA  
Sbjct: 15  LMKRFGIRTKHKLGQNFLIRPDIVKEIAYAAELNENSNVMEIGSGIGTLTQALAQTGAN- 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           VI  E D+    IL+     + N ++II +D LK D  K  +      + ANLPY I T 
Sbjct: 74  VISFEIDKSLENILQHTLEPYTN-VKIIFEDVLKADLYKILD-GKNWSVAANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +L   + +D +P    +   + QKEV ERI+A+  +  YG LS+   +  +   + DI P
Sbjct: 132 ILLYLVQSD-FP--ISTFVFMMQKEVAERISAKPGTKAYGALSIAVQFYCEVEHIMDIPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG---- 246
             F P P VTST++       P     +     ++ +  FG+RRK    ++K  GG    
Sbjct: 189 TAFIPRPAVTSTILKMKKRDKPAVEVTDKKLFFRLVKMGFGQRRKVFTNAMKS-GGIPKD 247

Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITN 274
               +L +AGI+   R E  S+E++ R+ N
Sbjct: 248 MINEILFKAGIDGKRRGETFSMEEYARLAN 277


>gi|85859079|ref|YP_461281.1| dimethyladenosine transferase [Syntrophus aciditrophicus SB]
 gi|119365852|sp|Q2LSQ6|RSMA_SYNAS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|85722170|gb|ABC77113.1| dimethyladenosine transferase [Syntrophus aciditrophicus SB]
          Length = 280

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 145/280 (51%), Gaps = 17/280 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ IL ++ I P K +GQ FL D +++KKI E +   +  T++EIG+G G +T ++    
Sbjct: 4   VRQILRNHDIKPVKRLGQCFLADFSVMKKIVELAEIKEDETIVEIGSGLGLMTSLMAERA 63

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPY 127
           A  V  +E D +   +LK+   ++ N + +I  D LK DF      N    I+II N+PY
Sbjct: 64  AW-VHAVEIDGKLVSVLKERLKEYHN-VTVIHGDILKYDFLTALGENSVKKIKIIGNIPY 121

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I + +LF+ +          +  L+ QKEV +R+ A   +  YG  +VL G   + +  
Sbjct: 122 SISSPILFHILDHRKQ---ISTAVLMMQKEVADRLCAVPGTKAYGIPTVLFGLYARISRE 178

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL- 244
             ++P  F+P P+VTSTV+  +    P+          ++ + AF +RRKTL  ++K   
Sbjct: 179 LTVAPGCFYPKPEVTSTVVKMLIPEEPLYWVENDALFFRLVKAAFAQRRKTLLNNMKNAH 238

Query: 245 -----GG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 G  ENLL   G    +RAE LSI+ F  + N L+
Sbjct: 239 WKDCDAGRIENLLRDMGAGEKIRAEELSIQQFAALCNSLS 278


>gi|312144343|ref|YP_003995789.1| dimethyladenosine transferase [Halanaerobium sp. 'sapolanicus']
 gi|311904994|gb|ADQ15435.1| dimethyladenosine transferase [Halanaerobium sp. 'sapolanicus']
          Length = 295

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 19/281 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLG 69
           K IL  Y +  KK +GQNFL+D NI+  I  ++       +IEIG G G+LTQ LL  L 
Sbjct: 12  KKILKEYDLRLKKGLGQNFLIDYNIIDIIINAAEIDGDELLIEIGPGIGSLTQALLEELK 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPY 127
             K+I IEKD +   +LK+I  Q  N+L+++ +DAL ++++K    N    I++IANLPY
Sbjct: 72  DGKLIAIEKDAEMVKVLKEIFPQQ-NKLKLLNEDALAIEWKKIAKENKGMGIKVIANLPY 130

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            + T ++ + + ++      E +  + QKEVGER+++   +  +G LSV   +  K  ++
Sbjct: 131 YVTTPIIMSILESEIE---LEKMIFMVQKEVGERMSSGPGTKKFGSLSVAVQYHMKPEIV 187

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCL---ESLKKITQEAFGKRRKTLRQSLKR 243
             +   VF P P V S ++   P+  NP    +   E   +I +  F +RRKTLR SL +
Sbjct: 188 HQVPSSVFLPQPDVDSVIVSLTPYSENPHQKKVIDQEFFFQIVKSIFQQRRKTLRNSLSK 247

Query: 244 LGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
               NL        L   GI    R E L I +   ITN L
Sbjct: 248 SAVINLDRDLVTKALELEGIGLKKRGEKLEISEMISITNRL 288


>gi|229825723|ref|ZP_04451792.1| hypothetical protein GCWU000182_01086 [Abiotrophia defectiva ATCC
           49176]
 gi|229790286|gb|EEP26400.1| hypothetical protein GCWU000182_01086 [Abiotrophia defectiva ATCC
           49176]
          Length = 300

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 151/288 (52%), Gaps = 24/288 (8%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y    +K  GQNFL+D ++L+KI +++       V+EIG G G +TQ L    AR
Sbjct: 12  AILKKYDFTFQKKFGQNFLIDTHVLEKIVDAADIGKDDLVLEIGPGIGTVTQYLCE-AAR 70

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYN 128
           +VI +E D++   ILKD  S + N +E+I +D LKVD        N   PI++++NLPY 
Sbjct: 71  QVIAVEIDRKLIKILKDTLSAYDN-VEVINEDILKVDIAALVEEKNEGKPIKVVSNLPYY 129

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++   +  +   P  + +TL+ Q+EV  R+ A   +  YG LS+   + +   +  
Sbjct: 130 ITTPIIMTLL--EKRVPVTD-MTLMMQEEVARRMQAAPGNKDYGALSLAVQYYSVPYIAA 186

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSL----- 241
            +  + F P P V S V++   H  P    +  E + K+ + +F +RRKTL+  L     
Sbjct: 187 FVPQNCFMPRPNVGSAVVNLKCHEKPPVEVMDEELMFKLIKASFAQRRKTLQNGLTNSAE 246

Query: 242 ----KRLGGENLLHQA---GIETN--LRAENLSIEDFCRITNILTDNQ 280
               K    E +L      G++ N  +R E L++++F  +++I ++N+
Sbjct: 247 LDFTKEEITEAILKMQELLGMKQNPLIRGETLTLKEFACLSDIFSNNK 294


>gi|183602652|ref|ZP_02964016.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219684013|ref|YP_002470396.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241191618|ref|YP_002969012.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241197023|ref|YP_002970578.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218070|gb|EDT88717.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621663|gb|ACL29820.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240250010|gb|ACS46950.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251577|gb|ACS48516.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794610|gb|ADG34145.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 297

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 139/282 (49%), Gaps = 21/282 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   ++KI   +G   G  V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVREAGVDAGDQVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIR 120
             GA  +  +E D    Q+    + +      NR  ++  DALKV   +   ++  +   
Sbjct: 74  ETGA-DLTAVEIDPPLAQRLPQTIAEFMPNATNRFRVVNMDALKVTPSQLPQLADAATFT 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++ANLPYN+ T +L   +       F   +S  ++ QKEV ER++AQ  S  YG  SV  
Sbjct: 133 LVANLPYNVATPILLTLLER-----FGNLDSFLVMVQKEVAERLSAQPGSKVYGTPSVKL 187

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-------CCLESLKKITQEAFG 231
            W   A  + +I  +VF+P+P V S ++ F  H    P          + + ++   +F 
Sbjct: 188 AWYGTAKSVGNIGRNVFWPAPNVDSALVRFERHAADDPRNPNNRSVGRDLVFRLIDASFA 247

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +RRKTL  +L+++       +AGI+   R E L I++F  + 
Sbjct: 248 QRRKTLHAALRKIVPSGAFERAGIDPTRRGETLDIDEFVALA 289


>gi|225714488|gb|ACO13090.1| Mitochondrial dimethyladenosine transferase 1, mitochondrial
           precursor [Lepeophtheirus salmonis]
          Length = 330

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 137/282 (48%), Gaps = 23/282 (8%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +P+K + QNF+LD   L ++++ +GSL   TV+E+G GPG +T+ +L  GA+KV VIEKD
Sbjct: 4   VPRKKLSQNFILDPKTLSRLSKVTGSLYNKTVVEVGPGPGGITRAILEQGAQKVFVIEKD 63

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------SPIRIIANLPYNIG 130
            +F P L  +     NRL I   D L  + +K  N             IR+I NLP+N+ 
Sbjct: 64  SRFLPSLDLLREASGNRLSIKIGDCLHFNTQKLLNSDLKSNWPDQVPNIRLIGNLPFNVA 123

Query: 131 TRL---LFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           T     LF  +S  ++ +        L FQ EV  R+ A     H  RLSV+     K  
Sbjct: 124 TPYVVKLFECMSDRSNIFSFGRVPSILTFQHEVAYRLIAPPGDKHRCRLSVMAQNYAKID 183

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKK-ITQEAFGKRRKTLRQSLKR 243
             + +    F P+P+V   V   IP   P I    + L++ +T     K++   R SL+ 
Sbjct: 184 YKYTLPGAAFVPTPEVNVGVAVLIPLSVPYIDVPFKFLERVVTTIMMHKQKSVFRTSLRL 243

Query: 244 LGGE-------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              E        LL  AG+  + R  +L+++DF RIT    D
Sbjct: 244 FPSEVRGKMAMQLLDVAGVSKDKRPLDLTMDDFARITYTYQD 285


>gi|297616271|ref|YP_003701430.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144108|gb|ADI00865.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM
           12680]
          Length = 292

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 21/286 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L+ Y + PKK +GQ+FLLD N+L  IA++        V+EIGAG G LT  L    
Sbjct: 11  VRAVLAKYNLHPKKRLGQHFLLDHNVLTSIAKACELNQNDYVVEIGAGIGALTGYLAQ-E 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS--SPIRIIA 123
           A+ V+ IE D      LK++ +   N ++ +  D LK++ E+     F+++  +  ++  
Sbjct: 70  AKGVLAIEVDPDLSEPLKEVLAGRDN-VKTLFGDILKLNIERETKQAFSLAPEASYKVCG 128

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I T ++F+ ++  T P    ++ L+ Q+EV ER+ A   +  YG L+V+  ++ +
Sbjct: 129 NLPYYITTPIIFHLLA--TAPSMCWAV-LMVQREVAERMLAPPGTKDYGMLTVMVRYQAE 185

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQS 240
             M+  +SP+ F P P+V S VI   P     P  + +    K + +EAF +RRKT+   
Sbjct: 186 VEMVRRVSPNCFRPRPEVDSAVIRVTPR-RARPWAIRNEDVFKGLVKEAFQRRRKTIHNI 244

Query: 241 LKRLGGENLLHQA------GIETNLRAENLSIEDFCRITNILTDNQ 280
           +    G +    A      G+E   R E L I++F +I +  ++ +
Sbjct: 245 VAEFFGVDKAEAAQKLGVLGVEPKRRPETLEIDEFGKIADAFSEQE 290


>gi|119356986|ref|YP_911630.1| dimethyladenosine transferase [Chlorobium phaeobacteroides DSM 266]
 gi|166221658|sp|A1BFM9|RSMA_CHLPD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119354335|gb|ABL65206.1| dimethyladenosine transferase [Chlorobium phaeobacteroides DSM 266]
          Length = 269

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 138/263 (52%), Gaps = 11/263 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K    H +I  KK +GQNFL D NI +KI   S +    T++EIG G G LT+ + T+ 
Sbjct: 2   IKVEYKHTEIAVKKKLGQNFLTDRNITRKIVTESETNPDDTILEIGPGFGALTREISTIT 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            R   V+EKD +    +++   ++P  L +I+ D L VD +K      P+R++ N+PY I
Sbjct: 62  PR-FTVVEKDPKLASFIRN---EYPE-LTVIEGDFLTVDLKKIAG-EKPLRVLGNIPYAI 115

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + +LF  +          S TL+ Q EV  RITA+  +  YG L+V      +   +F 
Sbjct: 116 TSPILFKLLENRH---ILLSATLMMQHEVALRITAKPRTKDYGILAVQMQAFCETKYLFR 172

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +   VF P P V S VI   P +N      E   +  + AF +RRKTL+ +LK+    + 
Sbjct: 173 VGRKVFRPQPGVDSAVISMKPKVNDPVSDREGFSRFVRCAFHQRRKTLQNNLKKTYELDR 232

Query: 250 LHQAGIETNLRAENLSIEDFCRI 272
           +  + ++   RAE LSI++F R+
Sbjct: 233 VESSVLKQ--RAEELSIDEFFRL 253


>gi|89892881|ref|YP_516368.1| hypothetical protein DSY0135 [Desulfitobacterium hafniense Y51]
 gi|219666144|ref|YP_002456579.1| dimethyladenosine transferase [Desulfitobacterium hafniense DCB-2]
 gi|119365023|sp|Q251W8|RSMA_DESHY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807864|sp|B8FY38|RSMA_DESHD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|89332329|dbj|BAE81924.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536404|gb|ACL18143.1| dimethyladenosine transferase [Desulfitobacterium hafniense DCB-2]
          Length = 278

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/269 (33%), Positives = 143/269 (53%), Gaps = 20/269 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL+D  +++ IA +S     I V+EIG G G LT+ +L   A+KV  +E D+  
Sbjct: 20  KSLGQNFLMDDRVIEAIAAASIKDPEIPVVEIGPGLGVLTR-VLAQKAQKVWAVELDRGK 78

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             +L+      P  ++I+  DALK+D +  +     + ++ NLPY I + LL +++    
Sbjct: 79  VNLLQRELQGLP--VDILNMDALKLDLKDIWGTGKGV-LVGNLPYYITSPLLMHFLEQKD 135

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                 S+ ++ QKEV +R+ A+     YG LS+      +   +F++ P  F+P+PKVT
Sbjct: 136 ---SLASMVVMVQKEVADRLVAKPGGKDYGILSIAAQVSAQGEKLFEVPPQAFWPAPKVT 192

Query: 203 STVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSL-------KRLGGENLLHQ 252
           S V+ F   L   P      K   ++ + AF +RRKTL  SL       K+  GE +L  
Sbjct: 193 SAVVRF--ELRSYPGFRVKEKDFFRVVKAAFSQRRKTLGNSLAGGLGLPKQQIGE-ILAA 249

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQD 281
           AG++   RAE LSI++F  +T  +  N D
Sbjct: 250 AGVDEQRRAETLSIDEFQAVTEAVMKNLD 278


>gi|289177753|gb|ADC84999.1| Dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 331

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 139/282 (49%), Gaps = 21/282 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   ++KI   +G   G  V+E+G G G+LT  +L
Sbjct: 48  AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVREAGVDAGDQVMEVGPGLGSLTLAIL 107

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIR 120
             GA  +  +E D    Q+    + +      NR  ++  DALKV   +   ++  +   
Sbjct: 108 ETGA-DLTAVEIDPPLAQRLPQTIAEFMPNATNRFRVVNMDALKVTPSQLPQLADAATFT 166

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++ANLPYN+ T +L   +       F   +S  ++ QKEV ER++AQ  S  YG  SV  
Sbjct: 167 LVANLPYNVATPILLTLLER-----FGNLDSFLVMVQKEVAERLSAQPGSKVYGTPSVKL 221

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-------CCLESLKKITQEAFG 231
            W   A  + +I  +VF+P+P V S ++ F  H    P          + + ++   +F 
Sbjct: 222 AWYGTAKSVGNIGRNVFWPAPNVDSALVRFERHAADDPRNPNNRSVGRDLVFRLIDASFA 281

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +RRKTL  +L+++       +AGI+   R E L I++F  + 
Sbjct: 282 QRRKTLHAALRKIVPSGAFERAGIDPTRRGETLDIDEFVALA 323


>gi|322800097|gb|EFZ21203.1| hypothetical protein SINV_11803 [Solenopsis invicta]
          Length = 353

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 144/292 (49%), Gaps = 26/292 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ IL  Y++   K + QNFL+D N+  KI + +G+L G  V+EIG GPG LT+ +L  
Sbjct: 11  TIRDILKIYRLNAIKRLSQNFLMDHNLTDKIIKKAGNLAGSQVLEIGPGPGGLTRSILRR 70

Query: 69  GARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF--------NISS 117
              +++V+EKD++F P L+ ++        +++II D+ L  + E  F        N   
Sbjct: 71  VPERLVVVEKDERFKPTLEMLAESFSAINGKMDIIYDNILNTNIESLFPEEKKRTWNDKP 130

Query: 118 P-IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           P I +I NLP+++ T L+  W+ A       W      +TL FQKEV ER+ AQ      
Sbjct: 131 PDIFLIGNLPFSLSTHLIIKWLHAIAEQRGPWAFGRTKMTLTFQKEVAERLVAQPFGEQR 190

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+    T  T+ F I    F P P V   V+ F P + P      +  +K+ +  F
Sbjct: 191 CRLSVMAQAWTFPTLRFIIPGKAFVPKPDVDVGVVSFAPLVKPRTQHDFKFFEKVVRHLF 250

Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITN 274
             R+K   + ++ L         G  +   A +E  LR   L++E+  R+  
Sbjct: 251 SFRQKYSIRCIETLFPKERCKDLGLMMYKLADLEPTLRPTQLTVEEVDRLAT 302


>gi|333029846|ref|ZP_08457907.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides
           coprosuis DSM 18011]
 gi|332740443|gb|EGJ70925.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides
           coprosuis DSM 18011]
          Length = 262

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 135/264 (51%), Gaps = 22/264 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKKY+GQ+FL D  I + IA +   +  I ++E+G G G LTQ LL    R + V++ D 
Sbjct: 6   PKKYLGQHFLKDQKIAQDIANTVDLIPEIPILEVGPGMGVLTQYLLP-KERPIKVVDLDT 64

Query: 81  QF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           +        FP LK+         +II+ D L ++  + F+   P  +  N PYNI +++
Sbjct: 65  ESIFYLYEEFPALKN---------DIIEADFLAMNLNQVFD-GKPFVLTGNYPYNISSQI 114

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     T + QKEV ERI A+     YG LSVL         +F +S  
Sbjct: 115 FFKMLDNKEIIPLC---TGMIQKEVAERIAAKPGKKTYGILSVLIQAWYDVEYLFTVSEK 171

Query: 194 VFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           VF P PKV S VI     +++ + C  +  K++ +  F +RRKTLR S+K + G+N    
Sbjct: 172 VFNPPPKVKSAVISMKRNNVSALGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKNSPIT 231

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
                  R E LS+E+F +ITN++
Sbjct: 232 EDDIFMKRPEQLSVEEFIKITNLV 255


>gi|167769167|ref|ZP_02441220.1| hypothetical protein ANACOL_00490 [Anaerotruncus colihominis DSM
           17241]
 gi|167668807|gb|EDS12937.1| hypothetical protein ANACOL_00490 [Anaerotruncus colihominis DSM
           17241]
          Length = 303

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 139/277 (50%), Gaps = 20/277 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L  +     K +GQNFL++  +  ++AE  G+  G+ V+EIGAG G LT  L    
Sbjct: 28  IRDVLGRHGFTFSKALGQNFLINPTVCPRMAEQGGARPGVGVLEIGAGVGVLTAELARR- 86

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124
           A +V+ +E D +  P+L +  +   N ++II  D L+VD      E+F  +   I + AN
Sbjct: 87  ADRVVCVEIDARLLPVLAETLAGFDN-IKIINADVLQVDLHALIAEQFAGLD--IVVCAN 143

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I + ++   +     P   +S+T++ QKE  +R+ AQ  +   G +S+   + ++ 
Sbjct: 144 LPYYITSPVVMALLE-QRLP--VQSVTVMVQKEAAQRLCAQPGTRGVGAVSIAVRYFSEP 200

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK 242
            M+F +S   F PSP V S VI       P     E     K+ + AF  RRKTL   L 
Sbjct: 201 HMLFAVSRGSFLPSPDVDSAVIRLDIRSAPAVDAGEPAVFFKVVRAAFSMRRKTLLNCLS 260

Query: 243 RLGG------ENLLHQAGIETNLRAENLSIEDFCRIT 273
              G        LL +AG+ +  RAE LS+E F  I 
Sbjct: 261 SGLGLSKGNTSALLARAGVPSGARAEQLSMEQFAAIA 297


>gi|227487807|ref|ZP_03918123.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227092309|gb|EEI27621.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 286

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 138/274 (50%), Gaps = 15/274 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   I+P K +GQNFL D N ++ I  ++G      VIE+G G G+LT + L   
Sbjct: 13  IRALAAQLDIVPTKKLGQNFLHDPNTVRMIVAAAGLEPDDRVIEVGPGLGSLT-LGLVGE 71

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              V  +E D++    L K ++   P    RL ++  DAL V  E F   + P  I+ANL
Sbjct: 72  VSAVTAVEIDRRLAEQLPKTVADHAPGCAERLSVVNADALAVTREAFGE-AEPTAIVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +   T P     L ++ Q+EV +R++A   +  YG  SV   +  +  
Sbjct: 131 PYNVAVPVLLHLLR--TVPSIRRVLVMV-QEEVADRLSASPGTKIYGVPSVKASYFGEVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
               +  HVF+P+P V+S ++       NP     E+L  +   AF +RRKTLR +L   
Sbjct: 188 KAGTVGKHVFWPAPNVSSGLVRIDCFESNPWGVSPEALFPLVDAAFAQRRKTLRAALGSF 247

Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
            G     E +L  AGI+   R E L +++F RI 
Sbjct: 248 FGGADRAEAILTAAGIDPRQRGEKLGVDEFVRIA 281


>gi|257092443|ref|YP_003166084.1| dimethyladenosine transferase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257044967|gb|ACV34155.1| dimethyladenosine transferase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 260

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 129/261 (49%), Gaps = 11/261 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK 78
           + +K  GQ+FL+D  I+  I +         V+EIG G   LT  LL  L    V+ I++
Sbjct: 4   VARKRFGQHFLVDRQIIDSIVDLVAVQRRDLVVEIGPGLAALTDPLLRRLDHLHVVEIDR 63

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNW 137
           D     + +  ++    RL I   DAL  DF +      + +RI+ NLPYNI T LLF+ 
Sbjct: 64  DM----VARLRAAYSAERLSIHAGDALAFDFGRLAAEAGAKLRIVGNLPYNISTPLLFHL 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                +      +  + Q+EV ER+ A   S  +GRLSV+  +R     + ++ P  F P
Sbjct: 120 AG---FGDGVRDMHFMLQREVVERMVAAPGSGDFGRLSVMLQYRFVMEWLLEVPPESFNP 176

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFG--KRRKTLRQSLKRLGGENLLHQAGI 255
            P+V S V+  IP L       +  +     A    +RRK LR SLK L GE  L + G+
Sbjct: 177 PPRVHSAVVRLIPRLAGDLAADDEAQFAAVVATAFAQRRKMLRNSLKSLVGEARLAEFGV 236

Query: 256 ETNLRAENLSIEDFCRITNIL 276
               RAE+LS++D+ R+ N L
Sbjct: 237 SPTCRAEDLSVDDYVRLANSL 257


>gi|194333711|ref|YP_002015571.1| dimethyladenosine transferase [Prosthecochloris aestuarii DSM 271]
 gi|226732609|sp|B4S787|RSMA_PROA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|194311529|gb|ACF45924.1| dimethyladenosine transferase [Prosthecochloris aestuarii DSM 271]
          Length = 261

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 136/259 (52%), Gaps = 11/259 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K    H +I  KK +GQNFL D N ++KI +S+    G  V+EIG G G LT  +L +  
Sbjct: 3   KVQYKHTEIAVKKKLGQNFLTDRNTIRKIVQSAEIQPGDHVVEIGPGFGALTSAILEVCP 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
                +EKD++    +++   ++P+ + +++ D L+VDF K      P++++ N+PY+I 
Sbjct: 63  -SFTAVEKDRKLADFIRE---EYPS-VNLVESDILEVDFAKLAE-EGPVKVMGNIPYSIT 116

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +LF  +   +      S TL+ Q EV  R+ A   +  YG L+V          +F +
Sbjct: 117 SPILFKLLENRSH---IISETLMMQHEVALRLAANPGTKEYGILAVQLQTFCDVRYLFKV 173

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              VF P P+V S V+  +P   P+  C    ++  + AF +RRKTL+ +LK+    ++ 
Sbjct: 174 GKKVFRPRPEVDSAVVRIVPKKTPLDDCETEFRRFVRLAFQQRRKTLQNNLKQ--HYDIS 231

Query: 251 HQAGIETNLRAENLSIEDF 269
             +  E   RAE+ +I +F
Sbjct: 232 QLSASELQRRAESFTITEF 250


>gi|120613389|ref|YP_973067.1| dimethyladenosine transferase [Acidovorax citrulli AAC00-1]
 gi|226729744|sp|A1TWF5|RSMA_ACIAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120591853|gb|ABM35293.1| dimethyladenosine transferase [Acidovorax citrulli AAC00-1]
          Length = 253

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/260 (35%), Positives = 135/260 (51%), Gaps = 14/260 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+  LG   V+ +
Sbjct: 2   KHIPRKRFGQHFLADQAIIDAIVRAIAPAPGQPMVEIGPGLAALTQPLVERLGRLTVVEL 61

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSP-IRIIANLPYNIGTRLL 134
           ++D     + + + S    +L++I+ D LKVDF     N+ +P IRI+ NLPYNI T +L
Sbjct: 62  DRD-----LAQRLRSH--GQLDVIESDVLKVDFSAVAANLGAPRIRIVGNLPYNISTPIL 114

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +         E    + QKEV +R+ AQ  +  YGRLSV+  WR     +  + P  
Sbjct: 115 FHLLEHVG---VVEDQHFMLQKEVIDRMVAQPATSDYGRLSVMLQWRYAMEDVLFVPPES 171

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P+V S V+  +PH  P P     L+++ Q AF +RRK LR +L R   E       
Sbjct: 172 FDPPPRVDSAVVRMVPHAAPAPVAPRLLEELVQVAFSQRRKLLRHTLGRW-LEARQFTGT 230

Query: 255 IETNLRAENLSIEDFCRITN 274
            +T  RAE + + D+  +  
Sbjct: 231 FDTQRRAEEVPVADYVALAQ 250


>gi|329768941|ref|ZP_08260368.1| dimethyladenosine transferase [Gemella sanguinis M325]
 gi|328836658|gb|EGF86316.1| dimethyladenosine transferase [Gemella sanguinis M325]
          Length = 286

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 136/268 (50%), Gaps = 16/268 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  +    KK +GQNFL+D NIL +I + +G  D + VIEIG G G+LT+ +    A++
Sbjct: 11  ILKKHGFTFKKSLGQNFLIDANILNRIVDGAGINDKVGVIEIGPGIGSLTEAVAK-RAKR 69

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPYN 128
           VI  E D +  PIL +  + + N +EII +D LKVD +K      +    I ++ANLPY 
Sbjct: 70  VISFEIDGRLLPILSETLADYSN-VEIINNDILKVDVDKIIEEKMSDCEKIMVVANLPYY 128

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L + I         +   ++ Q+EV  R+ A+  +  Y  L++L  + T    +F
Sbjct: 129 ITTPILTHLIENTKR---IDGYVVMMQREVANRLNAKVGTKDYNSLTILLNYYTNVEYLF 185

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------- 241
            +   VF P+P V S V+  +              K  +  F +RRKTL  +L       
Sbjct: 186 TVPKKVFVPAPNVESAVVKIMTKDEKEFEADSKFFKFVRSCFVQRRKTLLNNLISSYGKD 245

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDF 269
           K+   +N    + I++  R+E LS+ +F
Sbjct: 246 KKQELQNSCLDSEIDSTRRSETLSLREF 273


>gi|170730479|ref|YP_001775912.1| dimethyladenosine transferase [Xylella fastidiosa M12]
 gi|182681823|ref|YP_001829983.1| dimethyladenosine transferase [Xylella fastidiosa M23]
 gi|167965272|gb|ACA12282.1| rRNA (adenine-N(6)-)-methyltransferase [Xylella fastidiosa M12]
 gi|182631933|gb|ACB92709.1| dimethyladenosine transferase [Xylella fastidiosa M23]
 gi|307578073|gb|ADN62042.1| dimethyladenosine transferase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 297

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 12/273 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           +SH +++ L  +    KK  GQ+FL+D   + +I  +        ++EIG G G +T  L
Sbjct: 29  ESHGMESRL--FNTPAKKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPL 86

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIAN 124
           L      +  IE D+     L   ++    +L+II  D L VD        +  +R++ N
Sbjct: 87  LKCCG-SLTAIELDRDLIAPLTAAATPI-GKLDIIHRDVLTVDLSILAKQGNKKLRLVGN 144

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI + +LF+ +           +  + QKEV +R+ A   S  YGRLSV+     + 
Sbjct: 145 LPYNISSPILFHVLQQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEV 201

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSL 241
           T MF + P  F P PKV S +   +P  +P    +   K+   I + AFG+RRKTLR SL
Sbjct: 202 TTMFVVPPDAFQPPPKVNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSL 260

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
             +        AGI TN RAE L + +F  + N
Sbjct: 261 ADICTPAHFEHAGIRTNARAEQLEVTEFIALAN 293


>gi|295398232|ref|ZP_06808278.1| dimethyladenosine transferase [Aerococcus viridans ATCC 11563]
 gi|294973582|gb|EFG49363.1| dimethyladenosine transferase [Aerococcus viridans ATCC 11563]
          Length = 301

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 138/280 (49%), Gaps = 21/280 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  + +  KK +GQNFL +  IL+ + + +G       IEIG G G LT+  L + A+
Sbjct: 19  AILKKFNLDAKKSLGQNFLTEPQILQHMVDVAGVDKDTNAIEIGPGIGALTE-FLAINAK 77

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR---IIANLPYN 128
           +V+  E DQ+  P+L D  S + N + I   D L+ D         P     ++ANLPY 
Sbjct: 78  EVLAFEIDQRLLPVLADTLSDYDN-VTIKHQDILEADLNATMAAFPPAERTVVVANLPYY 136

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++FN + A      ++   L+ QKEV ER+TA   +  YG LSV   +   A + F
Sbjct: 137 ITTPIIFNLLEASFH---FDQFILMMQKEVAERLTAAPGTKAYGSLSVAIQYYCDAEIAF 193

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLG 245
            +   VF P P V S ++  +  L+     +E+      + + +F +RRKT+  +L+   
Sbjct: 194 TVPRTVFNPQPNVDSAILA-LNKLDKPRITVENEAFFFHLVRSSFKQRRKTIWNNLRAAF 252

Query: 246 GEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           G+           L  AG++   RAE L+I DF  + + L
Sbjct: 253 GKEEAVVEKMVKALEIAGVDQKQRAETLTIADFGHLADAL 292


>gi|261392930|emb|CAX50515.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase; 16S rRNA
           dimethylase; high level kasugamycin resistance protein
           KsgA; kasugamycin dimethyltransferase) [Neisseria
           meningitidis 8013]
          Length = 259

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L    I  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|332969263|gb|EGK08291.1| dimethyladenosine transferase [Kingella kingae ATCC 23330]
          Length = 262

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 132/260 (50%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +   +    VIEIG G   +T+ L T    ++ V E D+ 
Sbjct: 12  RKRFGQNFLQDTRIISDIVNAVRPVPDDIVIEIGPGLAAITEPL-TRKLNQLHVCEIDRD 70

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK  S    N+L I   D L+ DF    +I+   +I+ NLPYNI T LLF     A
Sbjct: 71  IITFLKKQS--FANKLVIHDGDVLQFDFR---SIAGRKKIVGNLPYNISTPLLFRLAEIA 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   +  YGRLSV+  +     M+ ++ P  F P+PK
Sbjct: 126 DEVI----DMHFMLQKEVVERMVATPKTNDYGRLSVMLQYFFDMEMLIEVPPESFNPAPK 181

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  IP  N I      +    + ++AF +RRKT+R +LK +  ++ L   GI   
Sbjct: 182 VDSAVVRMIPVENRIGKAENFKHFSDLVRDAFHQRRKTIRNNLKEIASDDDLQAVGILPQ 241

Query: 259 LRAENLSIEDFCRITNILTD 278
            RAE ++ + + +++N L +
Sbjct: 242 QRAEEIAPDTYVKLSNYLVN 261


>gi|227542448|ref|ZP_03972497.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181646|gb|EEI62618.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 286

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 136/274 (49%), Gaps = 15/274 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   I+P K +GQNFL D N ++ I  ++G      VIE+G G G+LT + L   
Sbjct: 13  IRALAAQLDIVPTKKLGQNFLHDPNTVRMIVAAAGLEPDDRVIEVGPGLGSLT-LGLVGE 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              V  +E D++    L    + H      RL ++ +DAL V  E F   + P  I+ANL
Sbjct: 72  VSAVTAVEIDRRLAEQLPKTVADHAPGCAERLSVVNEDALAVTREAFGE-AEPTAIVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +   T P     L ++ Q+EV +R++A   +  YG  SV   +  +  
Sbjct: 131 PYNVAVPVLLHLLR--TVPSIRRVLVMV-QEEVADRLSASPGTKIYGVPSVKASYFGEVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
               +  HVF+P+P V+S ++       NP     E L  +   AF +RRKTLR +L   
Sbjct: 188 KAGTVGKHVFWPAPNVSSGLVRIDCFESNPWGVSPEVLFPLVDAAFAQRRKTLRAALGSF 247

Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
            G     E +L  AGI+   R E L +++F RI 
Sbjct: 248 FGGADRAEAILTAAGIDPRQRGEKLGVDEFVRIA 281


>gi|332519203|ref|ZP_08395670.1| dimethyladenosine transferase [Lacinutrix algicola 5H-3-7-4]
 gi|332045051|gb|EGI81244.1| dimethyladenosine transferase [Lacinutrix algicola 5H-3-7-4]
          Length = 270

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/267 (35%), Positives = 145/267 (54%), Gaps = 15/267 (5%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIV 75
           +++  KK++GQ+FL D +I ++IA++  SL+G   V+EIG G G LT+ LL        V
Sbjct: 9   HQVKAKKFLGQHFLEDESIAEQIADAL-SLEGYKKVLEIGPGMGVLTKYLLKKPVT-TYV 66

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D +    LK+       R  I++ D LK D  + F    P  I  N PYNI T+++F
Sbjct: 67  IEIDTESVEYLKNNYLNLAPR--ILEKDFLKYDVSETFG-DEPFAISGNFPYNISTQIVF 123

Query: 136 NWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
             +   D  P F    + +FQKEV +RI +++ S  YG LSVLT     A  +F + P V
Sbjct: 124 KTLELRDQIPEF----SGMFQKEVAQRICSKEGSKVYGILSVLTQAFYNAEYLFTVPPTV 179

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQ 252
           F P PKV S V+      N  +PC  +   ++ ++AF +RRKTLR SLK     +NL  +
Sbjct: 180 FNPPPKVDSGVLKLTRKKNYSLPCDEKLFFRVVKQAFQQRRKTLRNSLKTFELSDNL--K 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           A +    R E L ++ F  +T ++ ++
Sbjct: 238 ANVIFGKRPEQLDVQAFIELTTLIEND 264


>gi|309371330|emb|CBX33011.1| hypothetical protein CBG_11970 [Caenorhabditis briggsae AF16]
          Length = 393

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 28/290 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +L+  +  Y++  KK + QN+L+D+NI +KIA+ +   +   VIEIG+GPG +T+ +L  
Sbjct: 10  ALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGILEA 69

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPI----- 119
           GA ++ V+E D +F P L+ ++    +R+ I   DAL+ +    ++K  N  S +     
Sbjct: 70  GASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPWHDS 129

Query: 120 -----RIIANLPYNIGTRLLFNWISADTWPP-FWE----SLTLLFQKEVGERITAQKNSP 169
                 +I NLP+NI + L+  ++   ++    WE     LTL FQ EV +R+ +     
Sbjct: 130 KLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPIACD 189

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228
              R+S++  +  +  ++F IS   F P P+V   V+ F+P   P +    E L+K+ ++
Sbjct: 190 TRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKLCRQ 249

Query: 229 AFGKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFC 270
            F  R+K + + LK L          + LL +  I+    +  L +E F 
Sbjct: 250 VFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFA 299


>gi|71276283|ref|ZP_00652561.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Dixon]
 gi|71898488|ref|ZP_00680660.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1]
 gi|71162891|gb|EAO12615.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Dixon]
 gi|71731801|gb|EAO33860.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1]
          Length = 297

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 12/273 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           +SH +++ L  +    KK  GQ+FL+D   + +I  +        ++EIG G G +T  L
Sbjct: 29  ESHGMESRL--FNTPAKKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPL 86

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIAN 124
           L      +  IE D+     L   ++    +L+II  D L VD        +  +R++ N
Sbjct: 87  LKCCG-SLTAIELDRDLIAPLTAAATPI-GKLDIIHRDVLTVDLSILAKQGNKKLRMVGN 144

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI + +LF+ +           +  + QKEV +R+ A   S  YGRLSV+     + 
Sbjct: 145 LPYNISSPILFHVLQQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEV 201

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSL 241
           T MF + P  F P PKV S +   +P  +P    +   K+   I + AFG+RRKTLR SL
Sbjct: 202 TTMFVVPPDAFQPPPKVNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSL 260

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
             +        AGI TN RAE L + +F  + N
Sbjct: 261 ADICTPAHFEHAGIRTNARAEQLEVTEFIALAN 293


>gi|219684472|ref|ZP_03539416.1| dimethyladenosine transferase [Borrelia garinii PBr]
 gi|219672461|gb|EED29514.1| dimethyladenosine transferase [Borrelia garinii PBr]
          Length = 281

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 151/287 (52%), Gaps = 24/287 (8%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           ++MN   N   S+K IL   KI P+K  GQN+L++ +I +KI ES    +   + EIG G
Sbjct: 6   LSMNINYNSITSIKQILKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G +T +LL      +   E D ++  IL +   +  N  ++I+ D     F+K+ N + 
Sbjct: 66  LGAMTDILLK-KTNFLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDF----FKKYPNENK 119

Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            I +I +NLPYNI ++++   I  +    F + + L  QKE+ +RITA+ NS +Y   +V
Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           L      A  + DI    F+P+PKV ST +  IP  N I    E   K+ +  F  RRK 
Sbjct: 176 LVQSHFTAIKIIDIGESNFYPAPKVKSTTLKLIPKKNNIKDFKE-FNKLIRTVFSSRRKK 234

Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L+ ++      K +  EN L +     + R EN+S+E+F +I+N LT
Sbjct: 235 LKNTIINFIKNKAILEENFLKEY---LDKRPENISVEEFIQISNTLT 278


>gi|59800723|ref|YP_207435.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA 1090]
 gi|293399578|ref|ZP_06643731.1| dimethyladenosine transferase [Neisseria gonorrhoeae F62]
 gi|62900452|sp|Q5F9W4|RSMA_NEIG1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|59717618|gb|AAW89023.1| putative dimethyladenosine transferase [Neisseria gonorrhoeae FA
           1090]
 gi|291610147|gb|EFF39269.1| dimethyladenosine transferase [Neisseria gonorrhoeae F62]
          Length = 259

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+PK
Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236

Query: 259 LRAENLSIEDFCRITNILTD 278
            RAE+++ E +  ++N L D
Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256


>gi|78485998|ref|YP_391923.1| dimethyladenosine transferase [Thiomicrospira crunogena XCL-2]
 gi|119365859|sp|Q31F24|RSMA_THICR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78364284|gb|ABB42249.1| dimethyladenosine transferase [Thiomicrospira crunogena XCL-2]
          Length = 266

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 133/260 (51%), Gaps = 12/260 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL +  I+++I  +        ++EIG G   LT  LL +  +K+ +IE D  
Sbjct: 7   KKRFGQNFLNNDRIIQQIVAAIAPKPDQHLVEIGPGEAALTGPLLDI-VKKLDIIEIDND 65

Query: 82  FF-PILKDISSQHPNRLEIIQDDALKVDFEKFFNISS---PIRIIANLPYNIGTRLLFNW 137
              P+ K  S  H     +   DAL  D+ +     +    +RI+ NLPYNI + LLF+ 
Sbjct: 66  LIGPLTKRFS--HNPAFHLHHTDALLFDYSQLLEAETETPSLRIVGNLPYNISSPLLFHL 123

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +  + + +  + QKEV ERITAQ     YGRLSV+  +  +   +  + P  F P
Sbjct: 124 LK---YARYIQDMHFMLQKEVVERITAQPGVKAYGRLSVMIQYTCETEYLLTVGPENFTP 180

Query: 198 SPKVTSTVIHFIP-HLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++   P    P     +    K+ ++AF ++RKTLR +LK    +  +   G+
Sbjct: 181 PPKVDSAIVRLRPFEKRPFQAIDDKDFAKLVKQAFSQKRKTLRNNLKGFLNDEQIEACGL 240

Query: 256 ETNLRAENLSIEDFCRITNI 275
           + ++RAE + +E F  ++N+
Sbjct: 241 DPSVRAEKVPVEAFVLLSNL 260


>gi|15838739|ref|NP_299427.1| dimethyladenosine transferase [Xylella fastidiosa 9a5c]
 gi|9107283|gb|AAF84947.1|AE004029_7 dimethyladenosine transferase [Xylella fastidiosa 9a5c]
          Length = 290

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 12/273 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           +SH +++ L  +    KK  GQ+FL+D   + +I  +        ++EIG G G +T  L
Sbjct: 22  ESHGMESQL--FNAPAKKAFGQHFLVDRYYIDRIIHAITPQPNDHIVEIGPGQGAITLPL 79

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIAN 124
           L      +  IE D+     L   ++    +L+II  D L VD        +  +R++ N
Sbjct: 80  LKCCG-SLTAIELDRDLIAPLTAAATPL-GKLDIIHRDVLTVDLSILAKPGNKKLRLVGN 137

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI + +LF+ +           +  + QKEV +R+ A   S  YGRLSV+     + 
Sbjct: 138 LPYNISSPILFHVLQQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEV 194

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSL 241
           T MF + P  F P PKV S +   +P  +P    +   K+   I + AFG+RRKTLR SL
Sbjct: 195 TTMFVVPPDAFQPPPKVNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSL 253

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
             +        AGI TN RAE L + +F  + N
Sbjct: 254 ADICTPAHFEHAGIRTNARAEQLEVTEFIALAN 286


>gi|312889917|ref|ZP_07749461.1| dimethyladenosine transferase [Mucilaginibacter paludis DSM 18603]
 gi|311297449|gb|EFQ74574.1| dimethyladenosine transferase [Mucilaginibacter paludis DSM 18603]
          Length = 259

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 134/255 (52%), Gaps = 10/255 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK++GQ+FL D NI +KI  S       T V+E+G G G L+  LL     +  +I+ D 
Sbjct: 7   KKHLGQHFLTDKNIAEKIVNSLKLHGNYTQVLEVGPGMGILSDFLLQKTDYQTYLIDIDT 66

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           + +  L+    Q  +RL  I  D L++DF K F  +SP  II N PYNI +++LF  +  
Sbjct: 67  ESYQFLQKKYPQLGSRL--INADFLEMDFGKTF--TSPFAIIGNFPYNISSQILFKVL-- 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D      E + + FQKEV ER +A+  S  YG LSV      K   +F +   VF P PK
Sbjct: 121 DNRQQVLEVVGM-FQKEVAERCSAKPGSKEYGILSVFLQAYYKVEYLFTVKAGVFNPPPK 179

Query: 201 VTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +  P   C E L  ++ +  F +RRKTLR ++  +  +  +    +  +L
Sbjct: 180 VLSAVIRLTRNDTPELNCDEKLFWQLVKAGFNQRRKTLRNAISSVIPKEKITDDPL-LDL 238

Query: 260 RAENLSIEDFCRITN 274
           RAE LS+ DF  +TN
Sbjct: 239 RAERLSVADFVTLTN 253


>gi|308388885|gb|ADO31205.1| putative dimethyladenosine transferase [Neisseria meningitidis
           alpha710]
 gi|325129842|gb|EGC52649.1| dimethyladenosine transferase [Neisseria meningitidis OX99.30304]
 gi|325202507|gb|ADY97961.1| dimethyladenosine transferase [Neisseria meningitidis M01-240149]
 gi|325207743|gb|ADZ03195.1| dimethyladenosine transferase [Neisseria meningitidis NZ-05/33]
          Length = 259

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L    I  
Sbjct: 176 KVDSAVVRMIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|239616459|ref|YP_002939781.1| dimethyladenosine transferase [Kosmotoga olearia TBF 19.5.1]
 gi|239505290|gb|ACR78777.1| dimethyladenosine transferase [Kosmotoga olearia TBF 19.5.1]
          Length = 272

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 137/264 (51%), Gaps = 12/264 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y I  K  +GQNF+ D  IL +I + SG  D  TVIEIG G G LT  L      K
Sbjct: 6   ILRKYGIHLKDSLGQNFIKDERILSRIVKDSGITDEATVIEIGIGLGTLTLKLAKKAK-K 64

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           VI  E D++F  I K++ S     ++II +D LK D + +   S P+  +AN+PY I + 
Sbjct: 65  VIGFEIDKRFEQIHKELLSD--KNIQIIYEDFLKADLKDY--DSRPLFYVANIPYYITSP 120

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +L   +      P +E+  L+ QKE  ER+ A+ +S  YG L+V  G  T    +F++S 
Sbjct: 121 ILEKILFEG---PAFEAAILMVQKEYAERLLAKPSSKSYGALTVTIGAFTMVRRLFNVSR 177

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL--GGEN 248
             F P+P V S+V+  I     +    E    +   + AF  RRK L+ +LK +    E 
Sbjct: 178 KAFIPAPAVDSSVVKLIMREQTLVPLNEKRRFRNFVKLAFSHRRKKLKNNLKPIIDNPEE 237

Query: 249 LLHQAGIETNLRAENLSIEDFCRI 272
            L   G   N+RAE L+IE F ++
Sbjct: 238 FLRSLGFSVNVRAEELTIESFVKL 261


>gi|313900886|ref|ZP_07834376.1| dimethyladenosine transferase [Clostridium sp. HGF2]
 gi|312954306|gb|EFR35984.1| dimethyladenosine transferase [Clostridium sp. HGF2]
          Length = 291

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 136/270 (50%), Gaps = 18/270 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  + +  KK  GQNFL++  I+ KIA  +   D   V EIG G G LTQ L    A
Sbjct: 12  KEILETHGMFAKKNYGQNFLIESGIVDKIARHAVLSDHCVVFEIGPGIGALTQYLCEY-A 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
           +KV+  E D++   +L D   ++ N  E++  D L++D ++    +      + I ANLP
Sbjct: 71  KKVVSFEIDERLPDVLADTLQEYDN-FELVMSDFLEIDLKEWCRTYREEGYDVVIAANLP 129

Query: 127 YNIGTRLLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           Y I T +LF      AD       ++T++ QKEV +R  A+ N+  Y  LS++T +R + 
Sbjct: 130 YYITTPILFKIFESKADVA-----AITVMMQKEVADRFAAEVNTKDYNALSIITQYRCEV 184

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL-----RQ 239
           T +  +  +VF P P V S V+ F     P     ES   + +  F +RRKT+       
Sbjct: 185 TPVMKVPKNVFLPKPNVDSAVLQFRFRDTPQNIEEESFFPLVKACFRQRRKTILNNYGEY 244

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDF 269
              +      L ++GI+   RAE++++ +F
Sbjct: 245 CQDKQQARAELEKSGIDCTRRAESVTLAEF 274


>gi|325136080|gb|EGC58690.1| dimethyladenosine transferase [Neisseria meningitidis M0579]
          Length = 259

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L    I  
Sbjct: 176 KVDSAVVRIIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|328792787|ref|XP_001121333.2| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Apis
           mellifera]
          Length = 343

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 128/245 (52%), Gaps = 18/245 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S+K +L  Y++   K + QNF+L+ N+  KI + +G+L+   V+EIG GPG LT+ +L  
Sbjct: 11  SIKDVLKIYRLRAMKELSQNFILNQNLADKIIKKTGNLNDCHVLEIGPGPGALTRSILKC 70

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISS-------- 117
             +K+IV+EKD++F P L+ ++        ++EII DD +K++    F  +         
Sbjct: 71  QPKKLIVVEKDKRFEPTLEMLADAFETINGKMEIIFDDIMKINMSNLFPSTEIKAWTEKC 130

Query: 118 -PIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             I++I NLP+N+ T L+   + A     D W      +TL FQKEV ER+ AQ      
Sbjct: 131 PRIKLIGNLPFNVSTPLIIKLLHAISEKRDAWTFGKTRMTLTFQKEVAERLIAQPLDVQR 190

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+    T   + F I    F P PKV   ++ F+P   P         +K+T+  F
Sbjct: 191 CRLSVMAQAWTHPVLHFIIPGTAFIPKPKVDVGLVTFVPLTIPRTKHEFSIFEKVTRHIF 250

Query: 231 GKRRK 235
             R+K
Sbjct: 251 SFRQK 255


>gi|195379696|ref|XP_002048613.1| GJ14068 [Drosophila virilis]
 gi|194155771|gb|EDW70955.1| GJ14068 [Drosophila virilis]
          Length = 420

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 153/292 (52%), Gaps = 23/292 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67
           S++ ++  YK+   K + QNFL+D  +  KI +++G +D    V+E+G GPG +T+ +L 
Sbjct: 104 SIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKAAGRIDPRDIVLEVGPGPGGITRSILR 163

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
              ++++++EKD +F     +L++ +     +++I  +D L+ + E+   + +  + +I 
Sbjct: 164 RQPQRLMLVEKDARFTETLQLLRECARPLNVQVDIYHEDILRFNIEQHVPDTAQRLHLIG 223

Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           NLP+ I TRLL NW    A     F  +   +TL FQKEV ERI A+  S    RLS+++
Sbjct: 224 NLPFAISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAKLGSDQRCRLSIMS 283

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235
              T+  + F I    F P P+V   V+  IP   P   +P  L  ++++ +  F  R+K
Sbjct: 284 QIWTEPLLKFIIPGKAFVPKPQVDVGVVKVIPLKKPKTQLPFSL--VERVVRHIFSMRQK 341

Query: 236 TLRQSLKRL----GGENLLHQ----AGIETNLRAENLSIEDFCRITNILTDN 279
             R+    L    G E   H     A ++  LR   LS+++  R+ ++  D+
Sbjct: 342 YCRRGYSTLLPPEGREETTHALFQLADVQDTLRPFELSVDECLRLADVYADH 393


>gi|329122105|ref|ZP_08250713.1| dimethyladenosine transferase [Dialister micraerophilus DSM 19965]
 gi|327466912|gb|EGF12428.1| dimethyladenosine transferase [Dialister micraerophilus DSM 19965]
          Length = 286

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 138/270 (51%), Gaps = 15/270 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           ++  + I  K  +GQNFL+  +I+K+IA ++   +   V+EIG+G G LTQ L   GA  
Sbjct: 17  LMKRFGIRTKHKLGQNFLIRPDIVKEIAYAAELNENSNVMEIGSGIGTLTQALAQTGAN- 75

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           VI  E D+    IL+     + N ++II +D LK D  K  +      + ANLPY I T 
Sbjct: 76  VISFEIDKSLENILQHTLEPYTN-VKIIFEDVLKADLYKILD-GKNWSVAANLPYYITTP 133

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +L   + +D +P    +   + QKEV ERI+A+  +  YG LS+   +  +   + DI P
Sbjct: 134 ILLYLVQSD-FP--ISTFVFMMQKEVAERISAKPGTKAYGALSIAVQFYCEVEHIMDIPP 190

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG---- 246
             F P P VTST++       P     +     ++ +  FG+RRK    ++K  GG    
Sbjct: 191 TAFIPRPAVTSTILKMKKRDKPAVEVNDKKLFFRLVKMGFGQRRKVFTNAMKS-GGIPKD 249

Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITN 274
               +L +AGI+   R E  S+E++ R+ N
Sbjct: 250 MINEILFKAGIDGKRRGETFSMEEYARLAN 279


>gi|303245325|ref|ZP_07331609.1| dimethyladenosine transferase [Desulfovibrio fructosovorans JJ]
 gi|302493174|gb|EFL53036.1| dimethyladenosine transferase [Desulfovibrio fructosovorans JJ]
          Length = 283

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 124/259 (47%), Gaps = 11/259 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+ +GQNFL D N   KI  + G   G TVIEIG G G LT ++   G    + +EKD++
Sbjct: 26  KRSLGQNFLSDPNTAAKIVSACGIAAGDTVIEIGPGRGALTGLIAAAGPSSFLALEKDRE 85

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +   +S  HP+ L +   DAL+ D+ +   +S  +RII NLPYNI + LL++  +  
Sbjct: 86  ---LAAHLSRTHPS-LAVALTDALRQDWSRLDRLSGNVRIIGNLPYNIASPLLWDLCAGA 141

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           T    +     + Q EV  R+ A      YG LS       +    F + P VF P PKV
Sbjct: 142 T---RFTRAAFMVQHEVALRLCAGPGGREYGALSAWIASHVRVAYCFKVPPTVFRPRPKV 198

Query: 202 TSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAGIET 257
            S V+   P  L+  P    +L K+ +  F KRRK L   LK   G  L   L   GI  
Sbjct: 199 DSAVVAMTPLPLSDRPAEPLALAKLLKTLFSKRRKQLGGILKAWRGPELDDWLAGQGIRL 258

Query: 258 NLRAENLSIEDFCRITNIL 276
             R E L+ +    +  +L
Sbjct: 259 TDRPETLAPKQLAGLAEML 277


>gi|110638030|ref|YP_678238.1| dimethyladenosine transferase [Cytophaga hutchinsonii ATCC 33406]
 gi|118600861|sp|Q11UL8|RSMA_CYTH3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|110280711|gb|ABG58897.1| dimethyladenosine transferase [Cytophaga hutchinsonii ATCC 33406]
          Length = 258

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 134/268 (50%), Gaps = 22/268 (8%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-------VIEIGAGPGNLTQMLLTLGA 70
           K+  KK++GQ+FL D  I + I      +DG+T       V+EIG G G LTQ LL   +
Sbjct: 3   KVKAKKHLGQHFLNDQQIAQDI------VDGLTLHGSYKEVLEIGPGMGVLTQYLLKNNS 56

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
               V++ D +    LK +  Q  +  ++I  D LK D   ++       II N PYNI 
Sbjct: 57  YHTKVVDIDGESIEYLKKVFPQLKD--DVIHGDFLKADLADWY--PDKFAIIGNFPYNIS 112

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T +LF  +      P    +  +FQKEV ER  A+  +  YG  SVL         +F +
Sbjct: 113 TEILFKVLDYREQIP---EVVGMFQKEVAERFAAKNGNKTYGITSVLLQAFYDIEYLFTV 169

Query: 191 SPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
             HVF P PKV S VI     +   +PC  +   K+ +  F  RRKTLR +LK +  +N+
Sbjct: 170 PEHVFTPPPKVKSGVIRLKRNNRTHLPCDEKEFFKVVKAGFNMRRKTLRNALKSINVQNI 229

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
                I  + RAE LS+++F  +TN+L+
Sbjct: 230 SMDLPI-FDKRAEQLSVQEFFDLTNMLS 256


>gi|269125239|ref|YP_003298609.1| dimethyladenosine transferase [Thermomonospora curvata DSM 43183]
 gi|268310197|gb|ACY96571.1| dimethyladenosine transferase [Thermomonospora curvata DSM 43183]
          Length = 316

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 134/275 (48%), Gaps = 17/275 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF++D N +++I   +   +   V+E+G G G+LT  LL   
Sbjct: 13  VRELAARLGVRPTKTLGQNFVIDANTVRRIVREADLDETDVVVEVGPGLGSLTLALLER- 71

Query: 70  ARKVIVIEKDQ----QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            ++V+ IE D     Q    ++  + +  +RLE++  DAL+V          P  ++ANL
Sbjct: 72  VQRVVAIEIDPVLAGQLPHTVRRRAPRLADRLEVVHADALRV---TELPGPPPTALVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++A  +P     L ++ Q EV ER+ A+     YG  SV   W   A 
Sbjct: 129 PYNVAVPVVLHLLAA--FPTLRRGL-VMVQAEVAERLVARPGGKVYGVPSVKLAWHAHAR 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRL 244
               +   VF+P P V S ++ F     P+     E +  +   AF +RRKTLR +L   
Sbjct: 186 RAGPVGRAVFWPVPNVDSALVAFTRRAEPVAQVSREEVFAVIDAAFAQRRKTLRAALAGW 245

Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
            G     E +L  AG++   R E L +  F RI  
Sbjct: 246 AGSAEAAERVLRAAGVDPKARGEALDVAAFARIAQ 280


>gi|225075613|ref|ZP_03718812.1| hypothetical protein NEIFLAOT_00629 [Neisseria flavescens
           NRL30031/H210]
 gi|224953035|gb|EEG34244.1| hypothetical protein NEIFLAOT_00629 [Neisseria flavescens
           NRL30031/H210]
          Length = 257

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 131/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        +IEIG G   +T+ L      ++ V E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQPDDIMIEIGPGLAAITEPLAK-KLNRLHVCEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF    +I    +I+ NLPYNI T LLF    ++
Sbjct: 66  IVRRLKTLP--FADKLVIHEGDVLQFDFN---SIEGKKKIVGNLPYNISTPLLFRLSEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV ER+ AQ  +  YGRL V+  +     M+ ++ P  F P+P
Sbjct: 121 DDVI-----DMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGISP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVELSNYLA 255


>gi|261855877|ref|YP_003263160.1| dimethyladenosine transferase [Halothiobacillus neapolitanus c2]
 gi|261836346|gb|ACX96113.1| dimethyladenosine transferase [Halothiobacillus neapolitanus c2]
          Length = 285

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 138/270 (51%), Gaps = 19/270 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ +I  +        ++EIG G G LT  L+      + V+E D+ 
Sbjct: 14  RKRFGQNFLTDEAVIARIVSAIAPKADDRLVEIGPGLGALTCQLIQ-PLTHLTVVELDRD 72

Query: 82  FFPIL----------KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
             P L           D SSQ  ++L +++ DAL ++ E       P+RI  NLPYNI T
Sbjct: 73  IIPKLLARCSKQKTAHDQSSQ--SKLTVLEQDALTLNLEPL-ACEGPLRIAGNLPYNIAT 129

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L+F+ +           +T + QKEV +R+ A   +  YGRLS++     +   +F + 
Sbjct: 130 PLIFHLLEQSKH---IIDMTFMLQKEVVDRLAAHPGNRDYGRLSLMVQAVAEVESLFVVP 186

Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENL 249
           P  F P PKV S ++  +P  +P +P  L++L  ++   AF  RRKTL+ +LK     + 
Sbjct: 187 PTAFNPPPKVDSAIVRLVPRTHPLVPDDLKALFGELVSLAFAHRRKTLQNNLKHRLPTST 246

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +  AGI+   RAE +S+++F  +  ++ + 
Sbjct: 247 IVLAGIDPGTRAEQVSLDEFITLARLVKEQ 276


>gi|326563671|gb|EGE13923.1| dimethyladenosine transferase [Moraxella catarrhalis 103P14B1]
 gi|326565249|gb|EGE15434.1| dimethyladenosine transferase [Moraxella catarrhalis 12P80B1]
 gi|326573279|gb|EGE23247.1| dimethyladenosine transferase [Moraxella catarrhalis 101P30B1]
 gi|326575822|gb|EGE25745.1| dimethyladenosine transferase [Moraxella catarrhalis CO72]
          Length = 284

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K  P+K  GQNFL D +I+ +I  +        ++EIG G G LT+ LL      + VIE
Sbjct: 12  KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLA-EVDGMTVIE 70

Query: 78  KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
            D+     LK +I +   +   II D+A+ V++            R++ NLPYNI T +L
Sbjct: 71  LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +    +    + +  + QKEV +RITA+ NS  YGRLSV+  +  ++  +  +    
Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-----GE 247
           F P PKVTS V    P+   PI    ES+   + +E+F  RRKTLR   K  G      E
Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +   + GI  + R E L + +F  + +++  N+
Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280


>gi|113866543|ref|YP_725032.1| dimethyladenosine transferase [Ralstonia eutropha H16]
 gi|122947140|sp|Q0KEA7|RSMA_RALEH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|113525319|emb|CAJ91664.1| dimethyladenosine transferase (rRNA methylation) [Ralstonia
           eutropha H16]
          Length = 280

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 131/274 (47%), Gaps = 24/274 (8%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVI 74
           H   + +K  GQNFL+D  I+  I  +        ++EIG G G LT  LL  +   +V+
Sbjct: 6   HQGHVARKRFGQNFLVDDTIIHGIVNAISPQADDVLVEIGPGLGALTDPLLERIPQMQVV 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +++D     +++ +  ++  RL++   DAL  DF+K      P+RI+ NLPYNI + LL
Sbjct: 66  ELDRD-----LVERLRRRYGERLQVHAGDALAFDFDKLAVPGRPLRIVGNLPYNISSPLL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +    +         + QKEV ER+ A+  S  +GRLS++   R     + D+ P  
Sbjct: 121 FHLMD---FADHVRDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHVLDVPPGA 177

Query: 195 FFPSPKVTSTVIHFI------------PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           F P PKV S V+  I            PH +   C +  L  +   AF +RRK LR +L 
Sbjct: 178 FNPPPKVDSAVVRMIPWPRHSDGRLRSPHAD---CDITVLGDVVTAAFSQRRKVLRNTLS 234

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            L  +      G +   RAE + + ++  +   L
Sbjct: 235 FLRDQVDFDAMGFDLGRRAEEVPVGEYVELARRL 268


>gi|327403715|ref|YP_004344553.1| dimethyladenosine transferase [Fluviicola taffensis DSM 16823]
 gi|327319223|gb|AEA43715.1| dimethyladenosine transferase [Fluviicola taffensis DSM 16823]
          Length = 262

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 129/255 (50%), Gaps = 10/255 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK++GQ+FL D  + K+IAE      G+ T IE+G G G LT+ L+      + V++ DQ
Sbjct: 7   KKHLGQHFLKDKGVCKRIAEQFKHHQGVKTAIEVGPGMGALTEFLIQDPETNLYVMDVDQ 66

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    LK   SQ   R  I+  D LK+D         P  ++ N PYNI +++LF  I  
Sbjct: 67  ESIDYLKINYSQLGER--IVFADFLKIDPTTIVG-QEPFAVLGNFPYNISSQILFKCIDL 123

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P    +  +FQKEV  R+  +  +  YG LSVL          F +  HVF P PK
Sbjct: 124 KDHVP---EIMGMFQKEVALRVAEKPGTKVYGILSVLLQAYYDIEYCFTVDEHVFDPPPK 180

Query: 201 VTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI     +   +PC  +  K++ + +F +RRKT+R S+K L  E   ++      L
Sbjct: 181 VKSGVIRCTRNNREKLPCDEKLFKQVVKMSFNQRRKTIRNSIKALLPET--YEENPMLQL 238

Query: 260 RAENLSIEDFCRITN 274
           R E L +E+F  +TN
Sbjct: 239 RPERLGVEEFIELTN 253


>gi|94309384|ref|YP_582594.1| dimethyladenosine transferase [Cupriavidus metallidurans CH34]
 gi|118600890|sp|Q1LRA1|RSMA_RALME RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|93353236|gb|ABF07325.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Cupriavidus metallidurans CH34]
          Length = 278

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 129/272 (47%), Gaps = 20/272 (7%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVI 74
           H   + +K  GQNFL+D  I+  I  +        V+EIG G G LT  LL  L   +V+
Sbjct: 6   HQGHVARKRFGQNFLVDDGIIHGIVSAIDPQPNDIVVEIGPGLGALTDPLLERLPGMQVV 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +++D     +++ +  ++ +RL +   DAL  DF K       +RI+ NLPYNI + LL
Sbjct: 66  ELDRD-----LVERLRRRYGDRLVVHAGDALAFDFGKLREPGRALRIVGNLPYNISSPLL 120

Query: 135 FNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           F+ +  AD           + QKEV ER+ A   S  YGRLS++   R     + D+ P 
Sbjct: 121 FHLVDFADDV----RDQHFMLQKEVVERMVADPGSKSYGRLSIMLQVRYHMEHVLDVPPA 176

Query: 194 VFFPSPKVTSTVIHFIP--------HLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
            F P PKV S V+  IP          +P   C    L  +   AF +RRK LR +L  L
Sbjct: 177 SFNPPPKVDSAVVRMIPWPRAEDGTLRSPYAACDAGVLGDVVTAAFSQRRKVLRNTLSFL 236

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +      G +   RAE + + ++  +  I+
Sbjct: 237 RDQVDFDALGFDLTRRAEEVPVAEYVELARIV 268


>gi|309371329|emb|CBX33010.1| hypothetical protein CBG_11971 [Caenorhabditis briggsae AF16]
          Length = 361

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 150/293 (51%), Gaps = 28/293 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +L+  +  Y++  KK + QN+L+D+NI +KIA+ +   +   VIEIG+GPG +T+ +L  
Sbjct: 10  ALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGILEA 69

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPI----- 119
           GA ++ V+E D +F P L+ ++    +R+ I   DAL+ +    ++K  N  S +     
Sbjct: 70  GASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPWHDS 129

Query: 120 -----RIIANLPYNIGTRLLFNWISADTW-PPFWE----SLTLLFQKEVGERITAQKNSP 169
                 +I NLP+NI + L+  ++   ++    WE     LTL FQ EV +R+ +     
Sbjct: 130 KLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPIACD 189

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228
              R+S++  +  +  ++F IS   F P P+V   V+ F+P   P +    E L+K+ ++
Sbjct: 190 TRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKLCRQ 249

Query: 229 AFGKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRIT 273
            F  R+K + + LK L          + LL +  I+    +  L +E F  + 
Sbjct: 250 VFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFADLA 302


>gi|296111672|ref|YP_003622054.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154]
 gi|295833204|gb|ADG41085.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154]
          Length = 295

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 143/277 (51%), Gaps = 21/277 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ Y +  KK  GQNFL DL +L  I + +G  D   VIEIG G G LT+  L   A
Sbjct: 14  QAILNTYGLHAKKKFGQNFLTDLTVLHGIVDIAGITDQDYVIEIGPGIGALTEQ-LARAA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           +KV+  E D Q   +L +    + N +++I  D L ++  +     F   + ++++ANLP
Sbjct: 73  KKVVAFEIDTQMVDVLSETLQPYDN-VKVINGDILDINLPEVIRAEFGEEAHVKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L   +  +     W+++ ++ Q+EV ER+ A+  +  YG L+++  +  +A +
Sbjct: 132 YYITTPILMQLLRTNIA---WDNIVVMMQREVAERLNAEVGTKAYGVLTLIIQYFAQAEL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL-RQSLKR 243
             ++S   F P+P V S V+   P L+P  +    E L  + + +F  RRK+L    L+ 
Sbjct: 189 AIEVSAASFNPAPNVDSAVVKLTP-LSPELVVAQPERLFGVIKGSFSHRRKSLWNNMLQT 247

Query: 244 LGGENL--------LHQAGIETNLRAENLSIEDFCRI 272
            G E +        L QA I  ++RAE L ++    +
Sbjct: 248 YGKEAVTKEKITKALDQANIAPSIRAERLDLKQLTAL 284


>gi|296113252|ref|YP_003627190.1| dimethyladenosine transferase [Moraxella catarrhalis RH4]
 gi|295920946|gb|ADG61297.1| dimethyladenosine transferase [Moraxella catarrhalis RH4]
 gi|326562888|gb|EGE13175.1| dimethyladenosine transferase [Moraxella catarrhalis 46P47B1]
 gi|326576903|gb|EGE26809.1| dimethyladenosine transferase [Moraxella catarrhalis O35E]
          Length = 284

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K  P+K  GQNFL D +I+ +I  +        ++EIG G G LT+ LL      + VIE
Sbjct: 12  KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLA-EVDGMTVIE 70

Query: 78  KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
            D+     LK +I +   +   II D+A+ V++            R++ NLPYNI T +L
Sbjct: 71  LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +    +    + +  + QKEV +RITA+ NS  YGRLSV+  +  ++  +  +    
Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-----GE 247
           F P PKVTS V    P+   PI    ES+   + +E+F  RRKTLR   K  G      E
Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +   + GI  + R E L + +F  + +++  N+
Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280


>gi|212278075|gb|ACJ23052.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVDNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+PK
Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236

Query: 259 LRAENLSIEDFCRITNILTD 278
            RAE+++ E +  ++N L D
Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256


>gi|326570246|gb|EGE20291.1| dimethyladenosine transferase [Moraxella catarrhalis BC8]
          Length = 284

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K  P+K  GQNFL D +I+ +I  +        ++EIG G G LT+ LL      + VIE
Sbjct: 12  KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLA-EVDGMTVIE 70

Query: 78  KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
            D+     LK +I +   +   II D+A+ V++            R++ NLPYNI T +L
Sbjct: 71  LDRDLASQLKINIGANSYSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +    +    + +  + QKEV +RITA+ NS  YGRLSV+  +  ++  +  +    
Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-----GE 247
           F P PKVTS V    P+   PI    ES+   + +E+F  RRKTLR   K  G      E
Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +   + GI  + R E L + +F  + +++  N+
Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280


>gi|149369569|ref|ZP_01889421.1| dimethyladenosine transferase [unidentified eubacterium SCB49]
 gi|149356996|gb|EDM45551.1| dimethyladenosine transferase [unidentified eubacterium SCB49]
          Length = 284

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 128/257 (49%), Gaps = 11/257 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL D  + + IAE+        VIEIG G G LT+ LL      ++ ++ D  
Sbjct: 29  KKHLGQHFLTDEGVARDIAETLTHKGYKNVIEIGPGTGVLTKYLLEKDI-NLVAMDLDSD 87

Query: 82  FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               L+   + +PN  L+I++ D L+ D + +F  +    I  N PYNI T+++F  +  
Sbjct: 88  SIAYLE---AHYPNDNLQILEADFLREDLQDYFG-TEQYAITGNFPYNISTQIVFKALEN 143

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T +FQKEV  RI A   S  YG LSVL      A  +F + P VF P PK
Sbjct: 144 KEQVP---EFTGMFQKEVAMRICANHGSKTYGILSVLAQAFYDAEYLFTVPPTVFNPPPK 200

Query: 201 VTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S V+      +  +PC    L K+ + AF +RRKTLR SLK       L +  I    
Sbjct: 201 VDSGVLRLTRKASLELPCSEAFLYKVVKTAFQQRRKTLRNSLKTFEISEKLKEDTI-FGQ 259

Query: 260 RAENLSIEDFCRITNIL 276
           R E LS+  F  +T  L
Sbjct: 260 RPEQLSVAQFIALTTKL 276


>gi|312149423|gb|ADQ29494.1| dimethyladenosine transferase [Borrelia burgdorferi N40]
          Length = 281

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 150/286 (52%), Gaps = 24/286 (8%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           ++MN   N   S+K  L   KI P+K  GQN+L++ +I +KI ES    +   + EIG G
Sbjct: 6   LSMNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G +T++LL      +   E D ++  IL +   +  N  ++I+ D LK    K+ N + 
Sbjct: 66  LGAMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYKNENQ 119

Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            I +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +V
Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           L     KA  + DI  + F+P+PKV ST +  IP  N I    E   K+ +  F  RRK 
Sbjct: 176 LVQSHFKAIKILDIGENNFYPAPKVKSTTLKLIPKKNNIKNFKE-FNKLVRTVFSSRRKK 234

Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L+ ++      K    EN L +     + R EN+S+E+F +I+N L
Sbjct: 235 LKNTIINFITNKATLKENFLKEY---LDKRPENISVEEFIQISNTL 277


>gi|148244651|ref|YP_001219345.1| dimethyladenosine transferase [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326478|dbj|BAF61621.1| dimethyladenosine transferase [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 254

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 132/252 (52%), Gaps = 13/252 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL+D  I+ +I  +        ++EIG G G +T  LL     ++ VIE D  
Sbjct: 9   RKRFGQNFLIDNRIIDRIIATISPKRNDNLLEIGPGQGAITIPLLNY-VNQLNVIEIDLN 67

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              IL+ +   H   L I Q D LK D      +  PIRII NLPYNI + +LF+ I   
Sbjct: 68  LISILESLEYSH---LIIYQGDVLKFDLNI---LPMPIRIIGNLPYNISSSILFHLIENL 121

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 + +T++ QKEV ER+ A   S  YGRLSV+        M+F + P  F P P+V
Sbjct: 122 DK---IQDITVMLQKEVVERMGANSGSKVYGRLSVMMQTFFNINMIFTVPPESFNPVPRV 178

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S +++  P   P    ++  +K+ + AF +RRK LR SLK +  +    Q  I+ + RA
Sbjct: 179 DSAIVYLKPLAQPKTKNIKVFEKVVKLAFSQRRKMLRNSLKYVLTQ---KQTDIDLSRRA 235

Query: 262 ENLSIEDFCRIT 273
           E L+++DF  +T
Sbjct: 236 EMLTVDDFITLT 247


>gi|147919487|ref|YP_686773.1| putative dimethyladenosine rRNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
 gi|110622169|emb|CAJ37447.1| putative dimethyladenosine rRNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
          Length = 260

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 140/267 (52%), Gaps = 27/267 (10%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P K   Q+FL+D  +L +I +++       V+EIGAGPGNLT+ LL   AR V  IE 
Sbjct: 3   LAPDKRKDQHFLIDQAVLHRIVDAAALSSDEVVLEIGAGPGNLTR-LLAQKARHVYTIEM 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++F   L+  +    + + +I  +ALKV+F +F       +++ANLPY+I + + F  +
Sbjct: 62  DRRFAEALE--ADFQGSNVTVIHGNALKVEFPRF------DKVVANLPYSISSDVTFKLL 113

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S   +P  ++   L++Q+E  +R+ A+     Y RLSV         ++F++S   F P 
Sbjct: 114 S---YP--FKFAILMYQREFAQRMAAKVGEEDYSRLSVTVQHFADVKLLFNVSRRAFNPQ 168

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLH----QA 253
           P+V STV+   P         E L  K+   AF  RRK L+++L  L G +++     Q+
Sbjct: 169 PEVESTVVKLTPRPAGYTVADEELFMKLVTAAFAGRRKKLKKAL--LNGAHMMGLKDPQS 226

Query: 254 GIET------NLRAENLSIEDFCRITN 274
            I        + RAE +S E+F  + N
Sbjct: 227 VISALPADVLDRRAEQVSPEEFALLAN 253


>gi|320353106|ref|YP_004194445.1| dimethyladenosine transferase [Desulfobulbus propionicus DSM 2032]
 gi|320121608|gb|ADW17154.1| dimethyladenosine transferase [Desulfobulbus propionicus DSM 2032]
          Length = 304

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 137/286 (47%), Gaps = 30/286 (10%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L    + P K +GQNFL+     ++I + +G      VIE+G G G LT+ L    A
Sbjct: 7   KQLLKRQGLAPHKKLGQNFLVHERTPRRIVDLAGLQPDDQVIEVGVGLGALTRPLAAAVA 66

Query: 71  RKVIVIEKDQ---QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            KVI +E D    +F    +D+    P  +E++  D LKVDF         ++I+ANLPY
Sbjct: 67  -KVIGLEADSGIIRFHQEQQDL----PANVELVHADVLKVDFAPLVEPGKRLKIVANLPY 121

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I +  LF  I       F     ++ QKEV +R+ AQ  S  YG  +VL     +   +
Sbjct: 122 SISSPFLFRLIDQAELMDFA---VVMLQKEVAQRLMAQPGSKEYGAPTVLLAACAEVRPL 178

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL--------KKITQEAFGKRRKTLRQ 239
             ++P  F P PKV S VI      +P P  ++ L         +I   AFG+RRKTL  
Sbjct: 179 LAVNPAEFHPRPKVDSLVIRI--DFHPRPKRVQDLGAFDRKLFTRIVHAAFGQRRKTLLN 236

Query: 240 SL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            L        K    E +L  AG+  + RAE LS+E F  +T  L+
Sbjct: 237 GLAAARVLDEKEKLAEAIL-AAGVSPSDRAETLSLEQFVTLTRELS 281


>gi|268560678|ref|XP_002646265.1| Hypothetical protein CBG11970 [Caenorhabditis briggsae]
          Length = 358

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 150/293 (51%), Gaps = 28/293 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +L+  +  Y++  KK + QN+L+D+NI +KIA+ +   +   VIEIG+GPG +T+ +L  
Sbjct: 8   ALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGILEA 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPI----- 119
           GA ++ V+E D +F P L+ ++    +R+ I   DAL+ +    ++K  N  S +     
Sbjct: 68  GASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPWHDS 127

Query: 120 -----RIIANLPYNIGTRLLFNWISADTW-PPFWE----SLTLLFQKEVGERITAQKNSP 169
                 +I NLP+NI + L+  ++   ++    WE     LTL FQ EV +R+ +     
Sbjct: 128 KLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPIACD 187

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228
              R+S++  +  +  ++F IS   F P P+V   V+ F+P   P +    E L+K+ ++
Sbjct: 188 TRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKLCRQ 247

Query: 229 AFGKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRIT 273
            F  R+K + + LK L          + LL +  I+    +  L +E F  + 
Sbjct: 248 VFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFADLA 300


>gi|319796617|ref|YP_004158257.1| dimethyladenosine transferase [Variovorax paradoxus EPS]
 gi|315599080|gb|ADU40146.1| dimethyladenosine transferase [Variovorax paradoxus EPS]
          Length = 254

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 129/265 (48%), Gaps = 28/265 (10%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK 78
           I +K  GQ+FL D  I+  I        G  ++EIG G   LTQ L+  LG   VI +++
Sbjct: 4   IARKRFGQHFLSDGGIIDAIVHEIAPQPGDAMVEIGPGLAALTQPLVERLGRLTVIELDR 63

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNIGTRLLFN 136
           D      L     +HP  LE+I+ D LKVDF +    ++P  +R++ NLPYNI T +LF+
Sbjct: 64  D------LAKRLREHPQ-LEVIESDVLKVDFAELAAKAAPKPLRVVGNLPYNISTPILFH 116

Query: 137 WISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            +       F   +T    + QKEV +R+ A+  +  Y RLSV+  WR     +  + P 
Sbjct: 117 LLG------FAHLITDQHFMLQKEVIDRMVARPATSDYSRLSVMLQWRYDMQNVLFVPPE 170

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P P+V S V+  +P   P       L +I Q AF +RRK LR +L +      L   
Sbjct: 171 SFDPPPRVDSAVVRMVPLAQPPVVDAARLGEIVQVAFSQRRKILRHTLGK-----WLETH 225

Query: 254 GIETNL----RAENLSIEDFCRITN 274
           G E       RAE + + ++  +  
Sbjct: 226 GFEGEFDPQRRAEEVPVAEYVALAQ 250


>gi|27151609|sp|Q9PBJ6|RSMA_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 265

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 125/257 (48%), Gaps = 10/257 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+FL+D   + +I  +        ++EIG G G +T  LL      +  IE D+ 
Sbjct: 11  KKAFGQHFLVDRYYIDRIIHAITPQPNDHIVEIGPGQGAITLPLLKCCG-SLTAIELDRD 69

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWISA 140
               L   ++    +L+II  D L VD        +  +R++ NLPYNI + +LF+ +  
Sbjct: 70  LIAPLTAAATPL-GKLDIIHRDVLTVDLSILAKPGNKKLRLVGNLPYNISSPILFHVLQQ 128

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T MF + P  F P PK
Sbjct: 129 AA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPPPK 185

Query: 201 VTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           V S +   +P  +P    +   K+   I + AFG+RRKTLR SL  +        AGI T
Sbjct: 186 VNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIRT 244

Query: 258 NLRAENLSIEDFCRITN 274
           N RAE L + +F  + N
Sbjct: 245 NARAEQLEVTEFIALAN 261


>gi|313668821|ref|YP_004049105.1| dimethyladenosine transferase [Neisseria lactamica ST-640]
 gi|313006283|emb|CBN87746.1| putative dimethyladenosine transferase [Neisseria lactamica 020-06]
          Length = 259

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 133/264 (50%), Gaps = 21/264 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEK 78
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L    A+K+    V+E 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPL----AKKLNCLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW- 137
           D+     LK +     ++L I + D L+ DF    +I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 138 -ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++ D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F 
Sbjct: 118 EVADDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFD 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P+PKV S VI  IP  + I      E   K+ + AF +RRKT+R +LK L  +  L   G
Sbjct: 173 PAPKVDSAVIRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVG 232

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           I    RAE+++ E +  ++N L D
Sbjct: 233 ISPQDRAEHIAPEKYIALSNYLAD 256


>gi|163786670|ref|ZP_02181118.1| dimethyladenosine transferase [Flavobacteriales bacterium ALC-1]
 gi|159878530|gb|EDP72586.1| dimethyladenosine transferase [Flavobacteriales bacterium ALC-1]
          Length = 262

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/268 (36%), Positives = 141/268 (52%), Gaps = 13/268 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKV 73
           +H ++  KK++GQ+FL D +I + IA+S  SL+G   V+EIG G G LT+ LL       
Sbjct: 3   NHNQVKAKKHLGQHFLTDESIAQDIADSL-SLEGYKDVLEIGPGMGVLTKYLLK-KETTT 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D +    LK+      +R  I + D LK D    F    P  II N PYNI +++
Sbjct: 61  HVIEIDTESVEYLKNNYLNLADR--IYEKDFLKYDLNLIFK-DKPFAIIGNFPYNISSQI 117

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF  +      P +  +   FQKEV +RI +++ S  YG LSVLT     A  +F + P 
Sbjct: 118 LFKTLELRHQIPEFSGM---FQKEVAKRICSKEGSKVYGILSVLTQAFYNADYLFTVPPT 174

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLH 251
           VF P PKV S V+      N  +PC  +   ++ +  F +RRKTLR SLK     +NL  
Sbjct: 175 VFNPPPKVDSGVLLLKRKENFKLPCDEKLFFRVVKTGFQQRRKTLRNSLKTFNLSDNL-- 232

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
           +A      R E LS+  F  +T+++ ++
Sbjct: 233 KANTIFGQRPEQLSVSKFIELTSLIEND 260


>gi|326560243|gb|EGE10631.1| dimethyladenosine transferase [Moraxella catarrhalis 7169]
 gi|326566439|gb|EGE16589.1| dimethyladenosine transferase [Moraxella catarrhalis BC1]
 gi|326570983|gb|EGE21007.1| dimethyladenosine transferase [Moraxella catarrhalis BC7]
          Length = 284

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K  P+K  GQNFL D +I+ ++  +        ++EIG G G LT+ LL      + VIE
Sbjct: 12  KHAPRKRFGQNFLHDTHIISQVVTAIRLDRQDNLLEIGPGLGALTEPLLA-EVDGMTVIE 70

Query: 78  KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
            D+     LK +I +   +   II D+A+ V++            R++ NLPYNI T +L
Sbjct: 71  LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +    +    + +  + QKEV +RITA+ NS  YGRLSV+  +  ++  +  +    
Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-----GE 247
           F P PKVTS V    P+   PI    ES+   + +E+F  RRKTLR   K  G      E
Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +   + GI  + R E L + +F  + +++  N+
Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280


>gi|73540206|ref|YP_294726.1| dimethyladenosine transferase [Ralstonia eutropha JMP134]
 gi|119365051|sp|Q475Q1|RSMA_RALEJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|72117619|gb|AAZ59882.1| dimethyladenosine transferase [Ralstonia eutropha JMP134]
          Length = 278

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 133/274 (48%), Gaps = 24/274 (8%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVI 74
           H   + +K  GQNFL+D +I+  I  +   L    ++EIG G G LT  LL  +   +V+
Sbjct: 6   HQGHVARKRFGQNFLVDDSIIHGIVNAINPLADDVLVEIGPGLGALTDPLLERVPQMQVV 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +++D     +++ +  ++ +RL++   DAL  DF +      P+RI+ NLPYNI + LL
Sbjct: 66  ELDRD-----LVERLRRRYGDRLQVHAGDALAFDFGRLAVPGRPLRIVGNLPYNISSPLL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +    +         + QKEV +R+ A+  S  +GRLS++   R     + D+ P  
Sbjct: 121 FHLMD---YADHVHDQHFMLQKEVVDRMVAEPGSKAFGRLSIMLQVRYHMEHVLDVPPGS 177

Query: 195 FFPSPKVTSTVIHFI------------PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           F P PKV S V+  I            PH +   C +  L  +   AF +RRK LR +L 
Sbjct: 178 FNPPPKVDSAVVRMIPWPRTESGRLRSPHAD---CDITVLGDLVTAAFSQRRKVLRNTLS 234

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            L  +      G +   RAE + + ++  +   L
Sbjct: 235 FLRDQIDFEAIGFDLGRRAEEVPVGEYVELARRL 268


>gi|33598179|ref|NP_885822.1| dimethyladenosine transferase [Bordetella parapertussis 12822]
 gi|62900579|sp|Q7W4J6|RSMA_BORPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33566737|emb|CAE38949.1| dimethyladenosine transferase [Bordetella parapertussis]
          Length = 265

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 15/252 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQ+FL D ++++ I  + G      V+EIG G   LT+ LL  +     + I++D 
Sbjct: 7   RKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDRIDHLTAVEIDRD- 65

Query: 81  QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               +   +  Q+P  RL +++ DAL VDF +F      +R++ NLPYNI + LLF+ + 
Sbjct: 66  ----LAARLRRQYPAERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLMG 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A            + Q+EV +R+ A+  S  Y RLSV+   R +  M+FD++P  F P P
Sbjct: 119 AAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEMLFDVAPEAFDPPP 175

Query: 200 KVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           +V S V+    +P     P    + + +   AF +RRK LR+ L          + GI  
Sbjct: 176 RVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLGDWAALTPWDELGIAP 235

Query: 258 NLRAENLSIEDF 269
             RAE + +  F
Sbjct: 236 TARAEEVGVAQF 247


>gi|28199096|ref|NP_779410.1| dimethyladenosine transferase [Xylella fastidiosa Temecula1]
 gi|32129656|sp|Q87C85|RSMA_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|28057194|gb|AAO29059.1| dimethyladenosine transferase [Xylella fastidiosa Temecula1]
          Length = 265

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 125/257 (48%), Gaps = 10/257 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+FL+D   + +I  +        ++EIG G G +T  LL      +  IE D+ 
Sbjct: 11  KKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPLLKCCG-SLTAIELDRD 69

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWISA 140
               L   ++    +L+II  D L VD        +  +R++ NLPYNI + +LF+ +  
Sbjct: 70  LIAPLTAAATPI-GKLDIIHRDVLTVDLSILAKQGNKKLRLVGNLPYNISSPILFHVLQQ 128

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T MF + P  F P PK
Sbjct: 129 AA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPPPK 185

Query: 201 VTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           V S +   +P  +P    +   K+   I + AFG+RRKTLR SL  +        AGI T
Sbjct: 186 VNSAITRLVPR-DPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIRT 244

Query: 258 NLRAENLSIEDFCRITN 274
           N RAE L + +F  + N
Sbjct: 245 NARAEQLEVTEFIALAN 261


>gi|224532232|ref|ZP_03672864.1| dimethyladenosine transferase [Borrelia valaisiana VS116]
 gi|224511697|gb|EEF82103.1| dimethyladenosine transferase [Borrelia valaisiana VS116]
          Length = 284

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 144/273 (52%), Gaps = 15/273 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S+K  L   KI P+K  GQN+L++ NI +KI ES    +   + EIG G G +T +LL  
Sbjct: 20  SIKQTLKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLGAMTDILLK- 78

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPY 127
               +   E D ++  IL +   +  N  ++I+ D LK    K+ N +  I +I +NLPY
Sbjct: 79  KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYTNENKNIDKIFSNLPY 133

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +VL         +
Sbjct: 134 NIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQSHFTVIKI 189

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS-LKRLGG 246
            DI  H F+P PKV ST +  IP  N I    E   K+ +  F  RRK L+ + +  +  
Sbjct: 190 IDIGEHNFYPVPKVRSTTLKLIPKENNIKDFKE-FNKLIRTVFSNRRKKLKNTIINFIAN 248

Query: 247 ENLLHQAGIETNL--RAENLSIEDFCRITNILT 277
           ++ L +  ++  L  R EN+S+E+F +I+N LT
Sbjct: 249 KDTLRENFLKEYLDKRPENISVEEFIQISNTLT 281


>gi|309775087|ref|ZP_07670100.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917201|gb|EFP62928.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 285

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 140/278 (50%), Gaps = 18/278 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  + +  KK  GQNFL++  I+ KIA  +   +   V EIG G G LTQ L    A
Sbjct: 12  KEILETHGMFAKKNYGQNFLIESGIVDKIARHAVISNHCVVFEIGPGIGALTQYLCEY-A 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
           +KVI  E D++   +L D   ++ N  E++  D L+ D     E +      I + ANLP
Sbjct: 71  KKVISFEIDERLPEVLADTLQEYDN-FELVMTDFLETDLNHWCEPYKKEGCDIVVAANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +LF     ++  P  +++T++ QKEV +R  A  N+  Y  LS++T +R +   
Sbjct: 130 YYITTPILFKIF--ESGAPI-DAITVMMQKEVADRFAATVNTKDYNALSIITQYRCEVLP 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR-------Q 239
           +  +  +VF P P V S V+ F     P     E    + +  F +RRKT+        Q
Sbjct: 187 VMKVPKNVFLPKPNVDSAVLQFRFKETPSDIDEELFFPLVKACFRQRRKTILNNYGEYIQ 246

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
             +R   E  L ++GI    RAE++++E+F R+  + T
Sbjct: 247 DKQRARDE--LEKSGIACARRAESVTLEEFIRLYEVHT 282


>gi|328948142|ref|YP_004365479.1| ribosomal RNA small subunit methyltransferase A [Treponema
           succinifaciens DSM 2489]
 gi|328448466|gb|AEB14182.1| Ribosomal RNA small subunit methyltransferase A [Treponema
           succinifaciens DSM 2489]
          Length = 291

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 134/281 (47%), Gaps = 12/281 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N    LK  L    +  +K  GQNF+++ +  +KI           V EIG G G +T++
Sbjct: 7   NSPSELKAFLEQSGMAMQKKFGQNFMINQSAREKIFSLLELKKDELVWEIGPGLGCMTEL 66

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           +L+ GA  + V E D+ F  ILK    Q     + +II+ D LK   + F+ N   P ++
Sbjct: 67  ILSSGAN-LEVFEIDRGFISILKQFFEQQEKSEQFKIIEGDVLKNWKKAFYENPQKPAKL 125

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI    + + I+ +     ++      QKEV +R+ A+K + +Y   SVL  W 
Sbjct: 126 FGNLPYNIAATFIADTITENV---VFKKCVFTVQKEVAQRMAAKKGTENYSAFSVLCQWG 182

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
               +   +    F+P P V+S  +      NP         K+    F  RRKT++ ++
Sbjct: 183 YNVKLDLVLGSSSFWPRPTVSSQAVVMTKKENPFSGNSALFVKVVHALFAARRKTIQNNI 242

Query: 242 KRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           K L       E    + GI    RAENL++EDF +I+++L+
Sbjct: 243 KPLLPENISAEEFFEKCGISKTERAENLAVEDFIKISDMLS 283


>gi|94269962|ref|ZP_01291617.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1]
 gi|93450994|gb|EAT01969.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1]
          Length = 288

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 24/281 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + ILS +K+ P K  GQNFL+   + ++I E +      TV+E+G G G LT+ L    A
Sbjct: 7   QKILSQHKLAPSKQRGQNFLVQPAVAERIVEVAEIEPTATVVELGVGLGALTRPLAARCA 66

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNI 129
            KVI +E D       +  S + P  +E+   D L+ D+          I+IIANLPY+I
Sbjct: 67  -KVIGLELDAGIVNYHRQ-SGELPANVELRHQDLLRADYPAMAAEQGGKIKIIANLPYSI 124

Query: 130 GTRLLFNWI---SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
              LLF  +    A  W      + L+ QKEV +R+ A   S  YG L+VL G       
Sbjct: 125 TNPLLFRLLVQRRALDW------VVLMIQKEVADRLVAAVGSKEYGVLTVLLGACATVER 178

Query: 187 MFDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +  + P  FFP PKV S VI       PH+ P       L+++   AF +RRKTL  SL 
Sbjct: 179 LLAVGPGNFFPRPKVDSVVIRLDFRNFPHV-PDDAEFGRLRRVVDAAFNQRRKTLLNSLS 237

Query: 243 ----RLGGENLLHQAG---IETNLRAENLSIEDFCRITNIL 276
                L  E +        +++ LRAE L+  DF R++  L
Sbjct: 238 AGLPELDRETIAAALAAAELDSGLRAERLTTADFRRLSAKL 278


>gi|307091952|gb|ADN28311.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 123

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           LDLN+  +IA ++GSL+  T++EIG GPG LT+ LL LGAR+VI +E+D +    L++++
Sbjct: 1   LDLNLTARIARAAGSLETHTIVEIGPGPGGLTRALLALGARRVIAVERDDRAIVALQEVA 60

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +++P RL+I+  DAL+ D           +I+ANLPYN  T LL  W+SA+ WPP+++++
Sbjct: 61  ARYPGRLDIVAADALEFDPRPMLG-GDRAKIVANLPYNTATVLLTGWLSAEPWPPWYDAM 119

Query: 151 TLLF 154
            L+F
Sbjct: 120 VLMF 123


>gi|332665266|ref|YP_004448054.1| ribosomal RNA small subunit methyltransferase A [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334080|gb|AEE51181.1| Ribosomal RNA small subunit methyltransferase A [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 260

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 136/267 (50%), Gaps = 24/267 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           KK  GQ+FL    I ++IA S  +   +   V+E+G G G LT+ LL   A  + V+E D
Sbjct: 4   KKSFGQHFLNREEIAERIANSLTTNTELAPLVLEVGPGKGMLTKYLLAKTA-SLKVVEAD 62

Query: 80  -------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
                  Q+++P L+D          II  D LKVD    FN      +I N PYNI ++
Sbjct: 63  VDMVNYLQKYYPQLQD---------NIISGDFLKVDLAAVFN-GQAFGLIGNFPYNISSQ 112

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++F+ I    + P+   +  +FQKE+ +RI A+     YG +SVLT    +   +F++  
Sbjct: 113 IVFHMIK---FRPYVPEMVGMFQKEMADRIIAKPGGKDYGVISVLTQAYYEGKTLFNVDK 169

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLH 251
             F P PKV S VI  +   N    C E+L +++ + +F +RRK LR +LK L  E++  
Sbjct: 170 SCFSPPPKVQSAVIRLLRKENQDLGCDEALFRQVVKTSFNQRRKMLRNTLKPLFAESVEI 229

Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278
              +    R E L++ DF  IT  L +
Sbjct: 230 LEDVFYQQRPEQLALNDFIEITRKLQN 256


>gi|282880957|ref|ZP_06289648.1| dimethyladenosine transferase [Prevotella timonensis CRIS 5C-B1]
 gi|281305180|gb|EFA97249.1| dimethyladenosine transferase [Prevotella timonensis CRIS 5C-B1]
          Length = 270

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 134/260 (51%), Gaps = 15/260 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DLNI K+IA++  +   I V+E+G G G +TQ L+    R++  +E D+
Sbjct: 6   PKKNLGQHFLTDLNIAKRIADTVDACPDIPVLEVGPGMGVMTQYLVE-KPREIKAVEIDR 64

Query: 81  QFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           +    L      H  +L+  II  D L++D +K F    P  +  N PY+I +++ F  +
Sbjct: 65  ESVAFL----HTHFPKLQGNIIGQDFLRMDLQKVFE-GRPFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  RI ++     YG LSVL         +F +  +VF P 
Sbjct: 120 ENKELIP---CCTGMIQREVALRIASEPGHKAYGILSVLIQAWYDVEYLFTVDENVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL-GGENLLHQ--AG 254
           PKV S VI    +      C E L K++ +  F +RRK LR SL++L  G N   +  AG
Sbjct: 177 PKVKSAVIRMTRNATTDLGCNEQLFKRLVKAVFNQRRKMLRVSLRQLFTGNNASAEFYAG 236

Query: 255 IETNLRAENLSIEDFCRITN 274
               +R E LSI+ F  +TN
Sbjct: 237 ELMTMRPEQLSIQQFVDLTN 256


>gi|332291630|ref|YP_004430239.1| dimethyladenosine transferase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169716|gb|AEE18971.1| dimethyladenosine transferase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 288

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 18/273 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIE 77
           I  KK++GQ+FL D ++ K IA++   +    V+EIG G G LT+ LL       V+ ++
Sbjct: 24  IKAKKHLGQHFLGDESVAKDIADTLTYVGYSHVLEIGPGTGVLTKYLLEKPTHLSVMDLD 83

Query: 78  KD-----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           ++     Q  F +   ++ +H     +++ D L+ D +  +     + I  N PYNI T+
Sbjct: 84  RESIAYLQSAFTLEHKLNDEH---FTVLEADFLRYDLDTIYP-GEQLAITGNFPYNISTQ 139

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++F  I      P     T +FQKEV  RI A   S  YG +SVL      A  +F + P
Sbjct: 140 IVFKTIEHKERIP---EFTGMFQKEVAARICADHGSKTYGIMSVLVQAFFDAEYLFTVPP 196

Query: 193 HVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
            VF P PKV S V+          I C  E L K+ + AF +RRKTLR SLK +G  +  
Sbjct: 197 TVFIPPPKVDSGVLRLKRKEGYQDIGCTQEMLFKVVKMAFQQRRKTLRNSLKGMGLSDEF 256

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            +  I T  R E +S+++F  +T  +T  +DIA
Sbjct: 257 REREILTR-RPEQISVQEFIALTAAIT--EDIA 286


>gi|261400380|ref|ZP_05986505.1| dimethyladenosine transferase [Neisseria lactamica ATCC 23970]
 gi|269209816|gb|EEZ76271.1| dimethyladenosine transferase [Neisseria lactamica ATCC 23970]
          Length = 259

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 132/264 (50%), Gaps = 21/264 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEK 78
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L    A+K+    V+E 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPL----AKKLNCLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW- 137
           D+     LK +     ++L I + D L+ DF    +I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 138 -ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++ D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F 
Sbjct: 118 EVADDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFD 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P+PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  +  L   G
Sbjct: 173 PAPKVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVG 232

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           I    RAE++  E +  ++N L D
Sbjct: 233 ISPQDRAEHIEPEKYVALSNYLAD 256


>gi|242279077|ref|YP_002991206.1| dimethyladenosine transferase [Desulfovibrio salexigens DSM 2638]
 gi|259494247|sp|C6BSW3|RSMA_DESAD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|242121971|gb|ACS79667.1| dimethyladenosine transferase [Desulfovibrio salexigens DSM 2638]
          Length = 262

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 132/249 (53%), Gaps = 16/249 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL D NI +KI +S    +  ++IEIG G G LT+ +L  G   + ++EKD+ 
Sbjct: 8   KKSLGQNFLQDANIARKIVDSLKITENDSIIEIGPGQGALTKFILEAGPESLTLVEKDRD 67

Query: 82  FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             P L+   +++P  R+E+  +DALK D+    +     +I+ NLPYN+ ++++++ I+A
Sbjct: 68  LAPALE---AEYPEARVEL--EDALKFDWAG-LDPDRNWKIVGNLPYNVASKIMWD-IAA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                   +   + Q EV +R+T+   S  YG +SV      +   +F + P VF P PK
Sbjct: 121 QC----NATCVFMVQHEVAQRVTSGPGSKKYGAISVWIQSFCRTDYLFKVPPTVFKPKPK 176

Query: 201 VTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA---GIE 256
           V S VI F P      P  +E L K+ +  F  RRK L + LK    + ++  A   G+ 
Sbjct: 177 VDSAVIKFFPLPEEEKPSDIEGLAKLVKYCFQYRRKQLGKILKSFISDAVIQWAEKEGVS 236

Query: 257 TNLRAENLS 265
              R E LS
Sbjct: 237 LTDRPEALS 245


>gi|78187147|ref|YP_375190.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273]
 gi|119365044|sp|Q3B3D4|RSMA_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78167049|gb|ABB24147.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273]
          Length = 273

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 130/257 (50%), Gaps = 15/257 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H +I  KK +GQNFL D NI +KI  +SG+     ++EIG G G LT+ +L +      V
Sbjct: 8   HTEIAVKKKLGQNFLTDRNITRKIVAASGAGSQDRILEIGPGFGALTREILEVCP-AFTV 66

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +EKD+        I  ++P  L++I+ D L +D E+      P+R++ N+PY+I T +LF
Sbjct: 67  VEKDRALAAF---IRQEYPQ-LQLIEADFLDIDLERL-AAGGPLRVLGNIPYSITTPILF 121

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +          S TL+ Q EV  R+ A  ++  YG L+V          +F +   VF
Sbjct: 122 KLLENRRS---ITSATLMMQHEVAARLVATPSTKEYGILAVQLQTFCDVRYLFKVGRKVF 178

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P P V S VI  +P  N      ++  +  + AF +RRKTL  +LK    +  + QA  
Sbjct: 179 RPQPNVDSAVISMVPKKNVAVEDAQAFSRFVRTAFHQRRKTLYNNLK----DAYMLQAVD 234

Query: 256 ETN--LRAENLSIEDFC 270
           E    LRAE LSIE   
Sbjct: 235 EGTLKLRAEALSIEKLA 251


>gi|213420100|ref|ZP_03353166.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 168

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 5/167 (2%)

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+
Sbjct: 2   PLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVM 58

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRK 235
             +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRK
Sbjct: 59  AQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRK 118

Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           T+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 119 TIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 165


>gi|261749284|ref|YP_003256969.1| dimethyladenosine transferase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497376|gb|ACX83826.1| dimethyladenosine transferase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 257

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/251 (37%), Positives = 134/251 (53%), Gaps = 8/251 (3%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K   Q FL D NI KKI ++    +  TV+EIG G G LT+ LLT    KV +IE D++ 
Sbjct: 8   KKFDQYFLKDKNIAKKIVKNLSFQNYNTVVEIGPGLGILTRYLLT-PWHKVFLIEIDKKL 66

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              L+   S   N  +II  D LK + E+  N+ +   II N PY I +++LF+ +  + 
Sbjct: 67  ILFLRKNFSVSKN--QIIHKDFLKWNPEEM-NLKN-FAIIGNFPYRISSQILFHILRYNQ 122

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           + P       +FQKEV ERIT+ + +  YG LSVL     +   +F ++ HVFFP P V 
Sbjct: 123 YIP---ECIGMFQKEVAERITSHEGNKTYGILSVLVQTFYEVKYLFTVNKHVFFPIPNVK 179

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S VI        I C  + L +  + AF +RRKTL+ +L+    E   +      N RAE
Sbjct: 180 SAVISLKRKERKIFCNKDLLFQCVKIAFNQRRKTLKNALQYFIKEIPNYYNLPFLNKRAE 239

Query: 263 NLSIEDFCRIT 273
            LS++DF ++T
Sbjct: 240 QLSVKDFLQLT 250


>gi|95930212|ref|ZP_01312950.1| dimethyladenosine transferase [Desulfuromonas acetoxidans DSM 684]
 gi|95133675|gb|EAT15336.1| dimethyladenosine transferase [Desulfuromonas acetoxidans DSM 684]
          Length = 263

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 136/266 (51%), Gaps = 17/266 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKD 79
           P+K  GQNFL D N++     ++       V+EIG G G LT QM+  + +  +I I++D
Sbjct: 6   PRKRFGQNFLKDKNVIAATIAAAELTGDDHVLEIGPGQGALTDQMIGRVASLDIIEIDRD 65

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              F   +    QH   L +   DAL++D+     +  P +++ANLPYNI +++LF  I 
Sbjct: 66  LATF--FQARPEQH---LTVHVGDALRLDWSAIL-LDPPYKLVANLPYNISSQILFKMIE 119

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                   E + L+FQKEVG+R+ A+ +S  YG L+VL       + +  + P  FFP P
Sbjct: 120 HRH---LIERMVLMFQKEVGDRLRAEPSSKDYGALTVLCQLWFDVSRVALVPPTAFFPQP 176

Query: 200 KVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252
           KV S V+ F     P     +     ++ + +F +RRKTLR  L   G      E +  +
Sbjct: 177 KVMSEVLCFKQREQPRAQVDDPAFFTRVVKASFAQRRKTLRNCLVAAGFTAEQLEKVTAE 236

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
            G++   R E  +IE+F ++ + L +
Sbjct: 237 TGLDFGRRGETFTIEEFAQLAHGLQN 262


>gi|325203784|gb|ADY99237.1| dimethyladenosine transferase [Neisseria meningitidis M01-240355]
          Length = 259

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 130/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV +R+ A   S  YGRL V+  +     ++ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  +  L  AGI  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAAGINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|26554486|ref|NP_758420.1| dimethyladenosine transferase [Mycoplasma penetrans HF-2]
 gi|33516937|sp|Q8EU92|RSMA_MYCPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|26454496|dbj|BAC44824.1| dimethyladenosine transferase [Mycoplasma penetrans HF-2]
          Length = 272

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 141/259 (54%), Gaps = 14/259 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K    + MGQNFL++ NI KKI +S        V+EIG G G LT+++L+   + + V+E
Sbjct: 17  KFFASRKMGQNFLINENIKKKIVDSLEIKPDDHVLEIGPGFGALTKIVLS-QTKNLTVVE 75

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D++    LK    Q    L II  D LK DF++F N  +  +II+NLPY+I ++++F  
Sbjct: 76  LDKRLVEFLK----QEYKELRIINIDVLKFDFKEF-NKDTQYKIISNLPYSISSKIIFKI 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +  F +S+ L+ QKE+ +RITA+  +  Y   +VL    ++   +FD+S + FFP
Sbjct: 131 LK---YANFSQSV-LMVQKEMADRITAKVGTKKYNNFTVLLRITSEIKKLFDVSNNCFFP 186

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK----RLGGENLLHQA 253
            P+V STVI F    +      E L+    + F ++RKT+  +LK    +   E + ++ 
Sbjct: 187 KPEVDSTVISFERKKDFDFTNFEKLESFLLKCFSQKRKTIFNNLKNYFPKQKIEEVFNKH 246

Query: 254 GIETNLRAENLSIEDFCRI 272
            I    R EN+  E + ++
Sbjct: 247 SIIPTTRPENIKEELYLKM 265


>gi|150024182|ref|YP_001295008.1| dimethyladenosine transferase [Flavobacterium psychrophilum
           JIP02/86]
 gi|166221664|sp|A6GVR5|RSMA_FLAPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|149770723|emb|CAL42187.1| Dimethyladenosine transferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 259

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/263 (36%), Positives = 137/263 (52%), Gaps = 29/263 (11%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKV--IVIEK 78
           KK++GQ+FL D +I K IA++  +L+G   V+EIG G G LT+ LL   A++V   VIE 
Sbjct: 7   KKHLGQHFLKDESIAKDIADTL-NLEGYDNVLEIGPGMGVLTKYLL---AKEVTTYVIEI 62

Query: 79  D-------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D        Q +P LKD         +II  D LK +  + F       II N PYNI T
Sbjct: 63  DTESVTYLDQNYPKLKD---------KIISKDFLKYNINEIFE-GKQFAIIGNFPYNIST 112

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +++F  +      P +  +   FQKEV +RI  +K +  YG LSVL      A  +F + 
Sbjct: 113 QIVFRALEYRNQIPEFAGM---FQKEVAQRICEKKGTKAYGILSVLVQAFYDAEYLFTVD 169

Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             VF P PKV S V+      +  +PC  +    + + AF +RRKTLR SLK L   ++L
Sbjct: 170 ETVFIPPPKVKSGVLRLRRKKDYSLPCGEKLFFTVVKTAFQQRRKTLRNSLKTLNLSDIL 229

Query: 251 HQAGIETNLRAENLSIEDFCRIT 273
            +  +  NLR E L ++ F  +T
Sbjct: 230 REDEV-FNLRPEQLDVQQFIELT 251


>gi|319638521|ref|ZP_07993283.1| dimethyladenosine transferase [Neisseria mucosa C102]
 gi|317400270|gb|EFV80929.1| dimethyladenosine transferase [Neisseria mucosa C102]
          Length = 259

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 132/262 (50%), Gaps = 19/262 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L   L    V  I++D 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLAKKLNCLHVCEIDRD- 65

Query: 81  QFFPILKDISS-QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-- 137
               I++ + +    ++L I + D L+ DF    +I    +I+ NLPYNI T LLF    
Sbjct: 66  ----IVRRLKTLPFADKLVIHEGDVLQFDFN---SIEGKKKIVGNLPYNISTPLLFRLSE 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++ D        +  + QKEV ER+ AQ  +  YGRL V+  +     M+ ++ P  F P
Sbjct: 119 VADDVI-----DMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDP 173

Query: 198 SPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  ++ L   GI
Sbjct: 174 APKVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELADDDDLQAVGI 233

Query: 256 ETNLRAENLSIEDFCRITNILT 277
               RAE+++ E +  ++N L 
Sbjct: 234 NPQDRAEHIAAEKYVELSNYLV 255


>gi|255535076|ref|YP_003095447.1| Dimethyladenosine transferase [Flavobacteriaceae bacterium 3519-10]
 gi|255341272|gb|ACU07385.1| Dimethyladenosine transferase [Flavobacteriaceae bacterium 3519-10]
          Length = 255

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/256 (37%), Positives = 130/256 (50%), Gaps = 16/256 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL+D NI KKI +S        V+E+G G G LT+ LL     +V V E D+ 
Sbjct: 6   KKHLGQHFLIDENIAKKIVDSLSYSQYTQVLEVGPGMGVLTKYLLE-KETEVFVAEIDRD 64

Query: 82  FFPILKDISSQHPNRLEI--IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               LK+    H  +LE     DD LK+D  + F     + +I N PYNI +++LF  I 
Sbjct: 65  SVAYLKN----HFPKLEARHFSDDFLKIDIAESF--GDQVAVIGNFPYNISSQILFKIID 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P    +  +FQKEV ER  A   +  YG LSVL       T +F +  +VF P P
Sbjct: 119 FYDRVP---EMVGMFQKEVAERTAAVPRTKDYGILSVLVQALYDVTYLFTVHENVFNPPP 175

Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-GENLLHQAGIET 257
           KV S VI    +        E L KKI +  FG+RRK L  SLK L   E + +   +E 
Sbjct: 176 KVKSGVIRLTRNPKEGLAGNEVLFKKIVKAGFGQRRKKLSNSLKVLEIPEAMQNHPFLEK 235

Query: 258 NLRAENLSIEDFCRIT 273
             RAE LS++DF   T
Sbjct: 236 --RAEELSVQDFISFT 249


>gi|227537514|ref|ZP_03967563.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242651|gb|EEI92666.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 259

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 130/255 (50%), Gaps = 10/255 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK++GQ+FL D N  +KI ++     G + V+E+G G G L+  LL     +  +I+ D 
Sbjct: 7   KKHLGQHFLNDKNAAQKIVDALDPKLGFSHVLEVGPGMGVLSDFLLQKPEYQTYLIDVDD 66

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L D   +  +RL  I  D L +DF K+F     + +I N PYNI +++LF  +  
Sbjct: 67  ESIEFLADKYPELGDRL--IHGDFLALDFSKYF--GPKMAVIGNFPYNISSQILFKILDE 122

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +T +FQKEV ER TA+  S  YG LSV          +F +    F P PK
Sbjct: 123 RQR---VVQMTGMFQKEVAERCTAKAGSKEYGILSVFLQAYYHVEYLFTVKAGAFTPPPK 179

Query: 201 VTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +      C E L  ++ +  F +RRKTLR SL  +  ++ +    +   L
Sbjct: 180 VLSGVIRMTRNEREELDCDEKLFWRVVKAGFNQRRKTLRNSLSGVVPKDKMSDNPL-YEL 238

Query: 260 RAENLSIEDFCRITN 274
           RAE LS+EDF ++TN
Sbjct: 239 RAERLSVEDFVQLTN 253


>gi|213613183|ref|ZP_03371009.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 226

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/244 (35%), Positives = 124/244 (50%), Gaps = 26/244 (10%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF-EKFFNIS 116
           +    +G R  K+ VIE D+     L+     HP    +L I Q DA+ ++F E    + 
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQT----HPFLGPKLTIYQQDAMTMNFGELSAQLG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 162

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 163 MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 222

Query: 235 KTLR 238
           KT+R
Sbjct: 223 KTIR 226


>gi|124005897|ref|ZP_01690735.1| dimethyladenosine transferase [Microscilla marina ATCC 23134]
 gi|123988580|gb|EAY28221.1| dimethyladenosine transferase [Microscilla marina ATCC 23134]
          Length = 258

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 130/258 (50%), Gaps = 11/258 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           PKK++GQ+FL DL+I ++I       +G  T++EIGAG G LT  L+     +  +IE D
Sbjct: 4   PKKHLGQHFLTDLSIAERIVNQVQQHNGYKTIVEIGAGTGVLTDFLVKSDNFQTHIIEID 63

Query: 80  QQFFPILKDISSQHPNRLEII-QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
            +    L      +P  +  I + D L +D    F   S I II N PYNI +++ F  +
Sbjct: 64  TESVEYL---HKHYPTLVPYITEGDFLNIDLGALFKQQS-IGIIGNFPYNISSQIFFKVL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV ERI AQ  S  YG LSVL       +  F + P VF P 
Sbjct: 120 DHRDQ---VQEVVCMLQKEVAERIAAQPGSKTYGILSVLLQAYYHISYDFTVPPDVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    + +  + C  +  K+I ++ F  RRKTLR +LK +   + L    +  
Sbjct: 177 PKVYSGVISLQRNKVKKLDCDEKLFKRIVKQGFNNRRKTLRNALKSIQLPDTLKPNEM-L 235

Query: 258 NLRAENLSIEDFCRITNI 275
           N RAE LS+  F  +T +
Sbjct: 236 NKRAEQLSVAHFVELTQL 253


>gi|300770912|ref|ZP_07080789.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300762185|gb|EFK59004.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 259

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 130/255 (50%), Gaps = 10/255 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK++GQ+FL D N  +KI ++     G + V+E+G G G L+  LL     +  +I+ D 
Sbjct: 7   KKHLGQHFLNDKNAAQKIVDALDPKLGFSQVLEVGPGMGVLSDFLLQKPEYQTYLIDVDD 66

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L D   +  +RL  I  D L +DF K+F     + +I N PYNI +++LF  +  
Sbjct: 67  ESIEFLADKYPELGDRL--IHGDFLALDFSKYF--GPKMAVIGNFPYNISSQILFKILDE 122

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +T +FQKEV ER TA+  S  YG LSV          +F +    F P PK
Sbjct: 123 RQR---VVQMTGMFQKEVAERCTAKAGSKEYGILSVFLQAYYHVEYLFTVKAGAFTPPPK 179

Query: 201 VTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    +      C E L  ++ +  F +RRKTLR SL  +  ++ +    +   L
Sbjct: 180 VLSGVIRMTRNEREELDCDEKLFWRVVKAGFNQRRKTLRNSLSGVVPKDKMSDNPL-YEL 238

Query: 260 RAENLSIEDFCRITN 274
           RAE LS+EDF ++TN
Sbjct: 239 RAERLSVEDFVQLTN 253


>gi|313886609|ref|ZP_07820322.1| dimethyladenosine transferase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332300878|ref|YP_004442799.1| Ribosomal RNA small subunit methyltransferase A [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923965|gb|EFR34761.1| dimethyladenosine transferase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332177941|gb|AEE13631.1| Ribosomal RNA small subunit methyltransferase A [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 271

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 125/257 (48%), Gaps = 11/257 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KKY+GQ+FL D    ++IA+S     G  ++E+G G G LTQ LL  G   + VI+ D +
Sbjct: 7   KKYLGQHFLTDHGAAQRIADSVADYLGTPILEVGPGMGVLTQPLLEAG-HDLQVIDIDHE 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIGTRLLFNWIS 139
               L     Q      II+ D LK+  E+        P  +I N PYNI +++ F  + 
Sbjct: 66  SIEYLHQHFPQLSQEGRIIEGDFLKLPAEELIPGRADMPFVVIGNYPYNISSQIFFRILE 125

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P   ++  + Q EV +R+ A      YG LSVL         +F +S   F P P
Sbjct: 126 LRERIP---AVAGMLQHEVAQRLCASPGGRDYGILSVLLQCWYDCDYLFKVSKRDFNPPP 182

Query: 200 KVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           KV   V+  I   N    +PC   + K++ + AFG+RRK LR +L  L G+   +     
Sbjct: 183 KVDGGVM--IARRNSRTELPCDEANFKRVVKTAFGQRRKMLRNALMSLFGKEFPYADHEI 240

Query: 257 TNLRAENLSIEDFCRIT 273
             LRAE LS+EDF  +T
Sbjct: 241 FTLRAERLSVEDFISLT 257


>gi|225016807|ref|ZP_03705999.1| hypothetical protein CLOSTMETH_00719 [Clostridium methylpentosum
           DSM 5476]
 gi|224950475|gb|EEG31684.1| hypothetical protein CLOSTMETH_00719 [Clostridium methylpentosum
           DSM 5476]
          Length = 290

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 144/280 (51%), Gaps = 20/280 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K IL+ +     K +GQNFL++  I  KIAE  G+  G  VIE+G G G LTQ L    
Sbjct: 10  IKEILNRHGFTFSKSLGQNFLINPGICPKIAELGGARPGGGVIEVGTGIGVLTQELAKR- 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124
           A KV+ +E D +  P+L +  ++  N ++I+  D LKVD      E+F N+  P+ + AN
Sbjct: 69  ADKVVAVEIDSRLLPVLDETLAEFDN-VKIVNQDILKVDLKLLIAEEFGNM--PVTVCAN 125

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I + +L   +  +  P   ES+T + QKE G RI A+  +   G +S+   + +  
Sbjct: 126 LPYYITSPILMRLLE-ERLP--IESVTAMVQKEAGVRICAEPGTREVGAVSLAVRYFSDP 182

Query: 185 TMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQ--- 239
            ++F++S   F P+P V S V+   +    P     E    ++ + AF +RRKTL     
Sbjct: 183 KILFNVSRGSFLPAPNVDSCVVRLDVRGETPRGVADEKFFFQLVRAAFSQRRKTLVNPVS 242

Query: 240 ---SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
               + + G    L  + I+   RAE L + +F  ++N L
Sbjct: 243 SALGISKDGVRQALLDSRIKPTARAEELKLYEFIELSNYL 282


>gi|295132335|ref|YP_003583011.1| dimethyladenosine transferase [Zunongwangia profunda SM-A87]
 gi|294980350|gb|ADF50815.1| dimethyladenosine transferase [Zunongwangia profunda SM-A87]
          Length = 279

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/259 (37%), Positives = 135/259 (52%), Gaps = 13/259 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVI 76
           ++  KK++GQ+FL D NI KKI ++  SL G   V+EIG G G LT+ LL     +V V+
Sbjct: 21  QVRAKKHLGQHFLKDENIAKKIGDTL-SLSGYDYVLEIGPGMGVLTKFLLQKDT-EVHVV 78

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D +    L     Q   R  I + D LK D  + F    P  +  N PYNI ++++F 
Sbjct: 79  EIDAESVDYLNANYLQLHGR--IHEQDFLKYDLTQVFG-HKPFAVTGNFPYNISSQIVFK 135

Query: 137 WISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            +   D  P F    + +FQKEV +RI  ++ S  YG LSVLT     A  +F + P VF
Sbjct: 136 VLEMRDQIPEF----SGMFQKEVAQRICEKEGSKTYGILSVLTQAYYDAEYLFTVPPSVF 191

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            P PKV S V+      +    C E+L  +I +  F +RRKTLR SLK L   + L +  
Sbjct: 192 NPPPKVDSGVLKLTRKKDYHLKCNEALFFRIVKMGFQQRRKTLRNSLKSLNLPDTLREDA 251

Query: 255 IETNLRAENLSIEDFCRIT 273
           I    R E LS +DF  +T
Sbjct: 252 I-FGKRPEQLSTQDFISLT 269


>gi|282859175|ref|ZP_06268297.1| dimethyladenosine transferase [Prevotella bivia JCVIHMP010]
 gi|282587994|gb|EFB93177.1| dimethyladenosine transferase [Prevotella bivia JCVIHMP010]
          Length = 267

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 13/264 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DL+I K+IA++  +   I ++EIG G G LTQ L+    R+V  +E D 
Sbjct: 6   PKKNLGQHFLTDLSIAKRIADTVDAYPEIPILEIGPGMGVLTQYLVE-KPREVKAVEIDS 64

Query: 81  QFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    L +     H N   II  D LK+D  + F+      +  N PY+I +++ F  + 
Sbjct: 65  ESVAFLYERFPKLHEN---IIGKDFLKMDLNEIFD-GKQFVLTGNYPYDISSQIFFKMLD 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     T + Q+EV  R+ A   +  YG LSVL         +F +  HVF P P
Sbjct: 121 YKELIP---CCTGMIQREVALRMAATPGNKAYGILSVLIQAWYDVEYLFTVDEHVFNPPP 177

Query: 200 KVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S V+  +  ++  + C     K++ +  F +RRK LR SLK++     + +   E  
Sbjct: 178 KVKSAVVRMMRNNVTDLGCDEILFKRLIKTVFNQRRKMLRVSLKQMMNNEKVSEGFFEQE 237

Query: 259 L---RAENLSIEDFCRITNILTDN 279
           +   R E LSIE F  +TNI+ + 
Sbjct: 238 MMTKRPEQLSIEQFVELTNIVGEE 261


>gi|160901464|ref|YP_001567046.1| dimethyladenosine transferase [Delftia acidovorans SPH-1]
 gi|160367048|gb|ABX38661.1| dimethyladenosine transferase [Delftia acidovorans SPH-1]
          Length = 268

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 16/246 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M     +H L   + H   IP+K  GQNFL D  I+  I  +     G +++EIG G   
Sbjct: 1   MEGGAMAHRLAFSMKH---IPRKRFGQNFLTDDGIIDGIVSAIDPRPGQSMVEIGPGLMA 57

Query: 61  LTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSP 118
           LTQ L+  LG   VI +++D         +  +   +L++++ D LKVDF      +  P
Sbjct: 58  LTQPLVERLGRLTVIELDRDLA-------VRLRLHEQLDVVESDVLKVDFRAIAARLGVP 110

Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            +RI  NLPYNI + +LF+ +         E    + QKEV +R+ A  ++  YGRL+V+
Sbjct: 111 KLRIAGNLPYNISSPILFHLLEQVD---VVEDQHFMLQKEVIDRMVASPSTAAYGRLTVM 167

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             WR     +  + P  F P PKV S V+  +P  +P     + L+++ Q AF +RRK L
Sbjct: 168 LQWRYAMESVLYVPPESFNPPPKVDSAVVRMVPRESPAALDAKLLEEMVQVAFSQRRKIL 227

Query: 238 RQSLKR 243
           R +L R
Sbjct: 228 RNTLGR 233


>gi|118595197|ref|ZP_01552544.1| dimethyladenosine transferase [Methylophilales bacterium HTCC2181]
 gi|118440975|gb|EAV47602.1| dimethyladenosine transferase [Methylophilales bacterium HTCC2181]
          Length = 259

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 135/265 (50%), Gaps = 13/265 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D +I+K+I       +   ++EIG G G LT+ +L+     + VIE 
Sbjct: 2   IKAKKKFGQNFLTDTSIIKEIINHINPKEKDRILEIGPGMGALTKPILS-KISHIDVIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D      L    +   +++ I+QDD L +  E    + S  RII NLPY I T ++   I
Sbjct: 61  DSDMVAHLNKTVAD--SQISIMQDDILLMSKEA---LRSFDRIIGNLPYYISTEIMIKMI 115

Query: 139 S-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
              D+   F      +FQ+EV ERI A   +  YGRLSVL  +   A ++  I    F P
Sbjct: 116 DLIDSKKDFH----FMFQREVAERIAAVPGTKCYGRLSVLIQYFFTAEILLHIPADAFTP 171

Query: 198 SPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PK+ S+ +  IP    +     +++ KK+ + AF ++RKT++ + K +  E   +  GI
Sbjct: 172 APKIQSSFVRLIPKKDFDLTFKDMDNFKKVIKLAFHQKRKTIKNNFKNILDEKDFNSLGI 231

Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280
               RAENLSI  F  I N +  N+
Sbjct: 232 NPQDRAENLSISTFINIENYMYGNK 256


>gi|110598757|ref|ZP_01387018.1| dimethyladenosine transferase [Chlorobium ferrooxidans DSM 13031]
 gi|110339621|gb|EAT58135.1| dimethyladenosine transferase [Chlorobium ferrooxidans DSM 13031]
          Length = 261

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 132/260 (50%), Gaps = 11/260 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K    H +I  KK +GQNFL D NI +KI  SSG+     ++EIG G G LT+ ++ + 
Sbjct: 2   IKVEYKHTEIAAKKKLGQNFLTDRNITRKIVASSGATADDNILEIGPGFGALTREIIAI- 60

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
                V+EKD +    ++   S++P  L++++ D L  D E       P+R++ N+PY+I
Sbjct: 61  CPTFTVVEKDPKLAAFIR---SEYPG-LKVLEADFLDTDLE-LLAGEKPLRVLGNIPYSI 115

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + +LF  +        + S TL+ Q EV  RI A+ ++  YG L+V        + +F 
Sbjct: 116 TSPILFKLLEHRRS---FISATLMMQHEVAMRIVARPSTKDYGILAVQMQAFCDVSYLFK 172

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +   VF P P V S VI   P         E  ++  + AF +RRKTL  +LK     NL
Sbjct: 173 VGRKVFRPQPGVDSAVISMKPKQESPVEESEGFRRFVRTAFHQRRKTLLNNLKE--SYNL 230

Query: 250 LHQAGIETNLRAENLSIEDF 269
                    LRAE L+IE+F
Sbjct: 231 DAVESSTLKLRAEALTIEEF 250


>gi|212550844|ref|YP_002309161.1| dimethyladenosine transferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549082|dbj|BAG83750.1| dimethyladenosine transferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 262

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 130/261 (49%), Gaps = 9/261 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+I PKK +GQ FL DL++ ++I E++     + V+E+G G G LTQ LL    R + V+
Sbjct: 5   YRIFPKKSLGQYFLNDLSVAQRIVETTSFYPELPVLEVGPGTGVLTQFLL-YSKRNLTVV 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D++    LK    Q  NR  II+ D LK+     F       +I N PY+I +++ F 
Sbjct: 64  EIDERSVNFLKKRYPQLGNR--IIEADFLKLSLGDLF--PGYFYVIGNYPYSIASQIFFK 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +    +     S + + QKEV ER+ +      YG ++VL         +F + P  F 
Sbjct: 120 ILD---YKDKILSCSGMLQKEVAERLVSSPGKKTYGIITVLLRTWYDVEYLFTVPPSCFN 176

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P+PKV S V+  + +      C ESL + I + AF +RRK LR SLK L           
Sbjct: 177 PNPKVDSAVVRMVRNGRTNLGCDESLFRTIVKTAFNQRRKILRNSLKSLFRRETSISISP 236

Query: 256 ETNLRAENLSIEDFCRITNIL 276
               R E LSIE+F  + N+ 
Sbjct: 237 LFYKRPEQLSIEEFIELANLF 257


>gi|161869639|ref|YP_001598806.1| dimethyladenosine transferase [Neisseria meningitidis 053442]
 gi|189028812|sp|A9M352|RSMA_NEIM0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|161595192|gb|ABX72852.1| dimethyladenosine transferase [Neisseria meningitidis 053442]
          Length = 259

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 130/260 (50%), Gaps = 15/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--IS 139
               LK +     ++L I + D L+ DF     I+   +I+ NLPYNI T LLF    ++
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GIAGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        +  + QKEV +R+ A   S  YGRL V+  +     ++ D+ P  F P+P
Sbjct: 121 DDVV-----DMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L    I  
Sbjct: 176 KVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDINP 235

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE+++ E +  ++N L 
Sbjct: 236 QDRAEHIAPEKYVALSNYLA 255


>gi|170017706|ref|YP_001728625.1| dimethyladenosine transferase [Leuconostoc citreum KM20]
 gi|226732593|sp|B1N079|RSMA_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|169804563|gb|ACA83181.1| Dimethyladenosine transferase [Leuconostoc citreum KM20]
          Length = 295

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 142/285 (49%), Gaps = 29/285 (10%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ Y +  KK  GQNFL DLN+L  I + +G      VIEIG G G LT+  L   A
Sbjct: 14  QAILNQYGLHAKKKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALTEQ-LARSA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           +KV+  E D     +L +    + N +++I++D LKV+        F   + ++I+ANLP
Sbjct: 73  KKVVAFEIDPHMVAVLAETLLPYDN-VKVIENDILKVNLAHVIATEFGEGAHVKIVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L   + A      W+++ ++ Q+EV +R+ A+  +  YG L++   +  +A +
Sbjct: 132 YYITTPILMQLLRAKIS---WDNIVVMMQREVADRLNAEIGTKAYGVLTLTIQYYAQAQL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL------NPIPCCLESLKKITQEAFGKRRKTLRQS 240
              +    F PSP V S V+   P +      NP     + L  + + +F  RRK+L  +
Sbjct: 189 AIKVPASAFNPSPNVDSAVVMLTPIVPETVVDNP-----DKLFSVVKGSFAHRRKSLWNN 243

Query: 241 LKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           + ++ G         ++ L    I +++RAE LS+     +   L
Sbjct: 244 MLQMFGKQEDVKQRIQDALDSVNIASSIRAERLSLNQLTALYEAL 288


>gi|258647596|ref|ZP_05735065.1| dimethyladenosine transferase [Prevotella tannerae ATCC 51259]
 gi|260852403|gb|EEX72272.1| dimethyladenosine transferase [Prevotella tannerae ATCC 51259]
          Length = 271

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 133/272 (48%), Gaps = 30/272 (11%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL   + IA++  +   + V+E+G G G LTQ LL  G R+  V+E 
Sbjct: 4   VKPKKNLGQHFLTDLPTAQAIADTIDACPDLPVLEVGPGMGMLTQFLLPKG-RETKVVEI 62

Query: 79  DQQF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D++        +P L D          I+ +D L++D  K F    P  +  N PY+I +
Sbjct: 63  DRESVAYLLNRWPALAD---------NILGEDFLRMDLSKVFG-GRPFVLTGNYPYDISS 112

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           ++ F  +    + P     T + QKE  ERI A   +  YG LSVL         +F + 
Sbjct: 113 QIFFKMLDFKDYIP---CCTGMIQKEAAERIAAPPGTKAYGILSVLLQRWYSVEYLFTVE 169

Query: 192 PHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           PHVF P PKV S V+    + +    C  + L+++ + +F +RRK LR SLK L  +   
Sbjct: 170 PHVFNPPPKVRSAVVRMTRNDVTDCGCNEQLLRRVVKTSFNQRRKMLRGSLKPLFAQLNN 229

Query: 251 HQAGI--------ETNLRAENLSIEDFCRITN 274
            Q  +           +R E LS+E F  +TN
Sbjct: 230 EQNKVLDHTDFLLPLTMRPEQLSVEQFVDLTN 261


>gi|212278071|gb|ACJ23050.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEI  G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEISPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+PK
Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236

Query: 259 LRAENLSIEDFCRITNILTD 278
            RAE+++ E +  ++N L D
Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256


>gi|300728350|ref|ZP_07061714.1| dimethyladenosine transferase [Prevotella bryantii B14]
 gi|299774386|gb|EFI71014.1| dimethyladenosine transferase [Prevotella bryantii B14]
          Length = 270

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 133/261 (50%), Gaps = 15/261 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DLNI K IA++  +   I V+E+G G G LTQ L T   RKV V+E D 
Sbjct: 6   PKKNLGQHFLTDLNIAKAIADTVDACPDIPVLEVGPGMGVLTQYLKT-KDRKVRVVEIDS 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L +  S      +I+ +D L++D  K F+   P  +  N PY+I +++ F  +  
Sbjct: 65  ESVAFLHENFSFMSE--DILGEDFLRMDLNKVFD-GQPFVLTGNYPYDISSQIFFKMLDN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + Q+EV  RI +Q  +  YG LSVL         +F +  +VF P PK
Sbjct: 122 KELIP---CCTGMIQREVALRIASQPGNKAYGILSVLIQAWYNVEYLFTVDENVFNPPPK 178

Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-----GGENLLHQAG 254
           V S VI    + +  + C  +  K++ +  F +RRK LR S+K++       E  +   G
Sbjct: 179 VKSAVIRMTRNDVMDLGCDEKLFKRLVKTVFNQRRKMLRVSIKQMFPGVKASEEFM--TG 236

Query: 255 IETNLRAENLSIEDFCRITNI 275
                R E LSI+ F  +TN+
Sbjct: 237 ELMTKRPEQLSIQQFIELTNL 257


>gi|148270487|ref|YP_001244947.1| dimethyladenosine transferase [Thermotoga petrophila RKU-1]
 gi|166221712|sp|A5IME8|RSMA_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|147736031|gb|ABQ47371.1| dimethyladenosine transferase [Thermotoga petrophila RKU-1]
          Length = 260

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 133/255 (52%), Gaps = 18/255 (7%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  Y +  KK++GQ FL D  I K+I +  G      V+EIGAG G LT+ L   GAR V
Sbjct: 7   LKKYGVKLKKHLGQVFLSDDRIAKRIVKEVGLTPEDVVVEIGAGAGTLTEELAKTGAR-V 65

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           I  E D+   P+L++  S++PN +E+  +D LK       +I      ++N+PY+I   +
Sbjct: 66  IAYEIDESLAPVLRERLSKYPN-VELRFEDFLKAK-----DIPEGAICVSNIPYSITGPI 119

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +   I    W   ++   ++ QKEVGERI A+     YG LSV+     +   +FD+S  
Sbjct: 120 MEKIIE---WK--FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P+P+V STV+        +    E  +K     F K+RKTL+ +L+      L    
Sbjct: 175 CFVPNPEVDSTVVDL--RRKSVDLDFEKFRKFVSMIFAKKRKTLKNNLRPF----LSVFE 228

Query: 254 GIETNLRAENLSIED 268
           G++ + RAE L++E+
Sbjct: 229 GVDLSRRAEQLTVEE 243


>gi|320095741|ref|ZP_08027390.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977327|gb|EFW09021.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 301

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 141/282 (50%), Gaps = 21/282 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ I     I P K +GQNF+ D   +++I  ++G  +G  VIE+G G G+LT  LL  G
Sbjct: 3   VRAISGALGIRPTKALGQNFVHDAGTVRRIVAAAGVGEGDEVIEVGPGLGSLTLALLEAG 62

Query: 70  ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFF--NISSPIRIIA 123
           AR V  +E D      L +          +RL ++  DA  +        +   P +++A
Sbjct: 63  AR-VRAVEIDPVLAAALPETVRARMGGAADRLHVVTADATAITGPADLGPDWPPPAKLVA 121

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L   +  D++P   + L ++ Q EV +R+ A   S  YG  SV   W  +
Sbjct: 122 NLPYNVAVPVLLAML--DSFPTLTDVL-VMVQAEVADRLAAGPGSRTYGVPSVKAAWYGR 178

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE----AFGKRRKTLRQ 239
           AT    I   VF+P P V S ++      +      ++L++ T E    AFG+RRKTLR 
Sbjct: 179 ATRAGTIGRSVFWPVPGVDSALVRL--RRSAEARGDDALRRATFEATDAAFGQRRKTLRA 236

Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +LK   G     E LL +AGI+   R E L+I++F R+   L
Sbjct: 237 ALKDWAGGAAASEALLAEAGIDPARRGETLTIDEFTRLGAAL 278


>gi|212278069|gb|ACJ23049.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  G NFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGPNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+PK
Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236

Query: 259 LRAENLSIEDFCRITNILTD 278
            RAE+++ E +  ++N L D
Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256


>gi|269216111|ref|ZP_06159965.1| dimethyladenosine transferase [Slackia exigua ATCC 700122]
 gi|269130370|gb|EEZ61448.1| dimethyladenosine transferase [Slackia exigua ATCC 700122]
          Length = 292

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 138/273 (50%), Gaps = 18/273 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           + +  L+ + +  KK +GQNFL+   I+ KI E +    G  V+E+G G G LT + L  
Sbjct: 12  ATRAALARHGLAAKKALGQNFLIHDAIVGKICELAQVDAGDDVLEVGPGIGTLT-VALCA 70

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            AR V  IE+D+   P+L++ S  + +   +   DAL+V  +     + P +++ANLPY 
Sbjct: 71  RARAVHAIERDRDLAPVLEE-SCWNFDNFTLHMGDALQVGSDDLGGFA-PTKLVANLPYA 128

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           +   L+ ++   D +P    S+T++ Q EV +R+ A   +  Y   SV    R +AT  F
Sbjct: 129 VAATLVLDFF--DRFPSM-RSMTVMVQSEVADRMAASLGTKDYAAYSVKLALRAQATGRF 185

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK----RL 244
           +++P  F P+P V+S VI      +  P  +         AF  RRKT+  S+K    R 
Sbjct: 186 EVAPSNFMPAPHVSSAVIRLDRVQDHAPDDVALASVAADAAFAARRKTIANSMKAYFSRP 245

Query: 245 GGENL--------LHQAGIETNLRAENLSIEDF 269
           G  +L        L  AGI+   R E LS+++F
Sbjct: 246 GSRHLEAADIVHALETAGIDARRRGETLSLDEF 278


>gi|194336270|ref|YP_002018064.1| dimethyladenosine transferase [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308747|gb|ACF43447.1| dimethyladenosine transferase [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 262

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 133/258 (51%), Gaps = 13/258 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H +I  KK +GQNFL D NI +KI  +SG+     ++EIG G G LT+ ++        V
Sbjct: 9   HTEIAVKKKLGQNFLTDRNITRKIVIASGATPQDNILEIGPGFGALTRAIMEFCPL-FTV 67

Query: 76  IEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           +EKD +    L D I S++P +L +I+ D L+ D     +   P++I+ N+PY+I T +L
Sbjct: 68  VEKDHK----LADFIRSEYP-QLNLIEGDFLETDLAALAH-DKPLKILGNIPYSITTPIL 121

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +        + S TL+ Q EV  RI A  ++  YG L+V          +F +   V
Sbjct: 122 FKLLEHRHT---FFSATLMMQHEVAMRIVAHPSTKDYGILAVQMQAFCDVNYLFKVGRKV 178

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P V S V+   P  N      +  ++  + AF +RRKTL  +LK     NL   A 
Sbjct: 179 FRPQPGVDSAVLQMTPKNNVPLNDADGFRRFVRIAFHQRRKTLLNNLKE--SYNLESVAN 236

Query: 255 IETNLRAENLSIEDFCRI 272
               LRAE LS+EDF ++
Sbjct: 237 HTLKLRAEALSVEDFFQL 254


>gi|212278073|gb|ACJ23051.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 13/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEI  G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIDPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+PK
Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236

Query: 259 LRAENLSIEDFCRITNILTD 278
            RAE+++ E +  ++N L D
Sbjct: 237 DRAEHIAPEKYVALSNYLAD 256


>gi|317054978|ref|YP_004103445.1| dimethyladenosine transferase [Ruminococcus albus 7]
 gi|315447247|gb|ADU20811.1| dimethyladenosine transferase [Ruminococcus albus 7]
          Length = 286

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 146/282 (51%), Gaps = 18/282 (6%)

Query: 3   MNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+N S+   +K ++  +     K +GQNFL++ ++  +IAE   +  G  VIEIG G G 
Sbjct: 1   MDNLSNIGVIKDVMQRHGFTFSKALGQNFLVNPSVCPRIAEMGNAKAGYGVIEIGTGVGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117
           LT  L    A KV+ IE D +  P+L++  ++H N +++I  D +KVD  K         
Sbjct: 61  LTNELAKR-ADKVVAIEIDDRLIPVLEETLAEHDN-VKVINADVMKVDLHKLIEDEFSGM 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            + + ANLPY I + +L   +          S+T++ QKE G R+ A   +   G ++V 
Sbjct: 119 EVAVCANLPYYITSPILMMLLEQRLR---IRSVTVMVQKEAGTRLCAPLGTRDMGAVTVA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRK 235
             + ++  ++F++S   F P+P V S V+ F I    P     E+   K+ + AF +RRK
Sbjct: 176 VNYFSEPKILFNVSRGSFMPAPNVDSCVVRFDIKENTPEGVTDEAFFFKMVRAAFSQRRK 235

Query: 236 TLRQSLKR-LGGEN-----LLHQAGIETNLRAENLSIEDFCR 271
           TL  S+   LG +       +  +G++ N+R E L +++F R
Sbjct: 236 TLVNSVSAGLGADKQTVAAAVENSGLQANVRPEQLLMKEFVR 277


>gi|15594935|ref|NP_212724.1| dimethyladenosine transferase [Borrelia burgdorferi B31]
 gi|195941723|ref|ZP_03087105.1| dimethyladenosine transferase [Borrelia burgdorferi 80a]
 gi|216264801|ref|ZP_03436793.1| dimethyladenosine transferase [Borrelia burgdorferi 156a]
 gi|218249411|ref|YP_002375098.1| dimethyladenosine transferase [Borrelia burgdorferi ZS7]
 gi|223888886|ref|ZP_03623477.1| dimethyladenosine transferase [Borrelia burgdorferi 64b]
 gi|224532720|ref|ZP_03673337.1| dimethyladenosine transferase [Borrelia burgdorferi WI91-23]
 gi|225548676|ref|ZP_03769723.1| dimethyladenosine transferase [Borrelia burgdorferi 94a]
 gi|226321896|ref|ZP_03797422.1| dimethyladenosine transferase [Borrelia burgdorferi Bol26]
 gi|27151556|sp|O51536|RSMA_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729758|sp|B7J2F3|RSMA_BORBZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|2688507|gb|AAB91517.1| dimethyladenosine transferase (ksgA) [Borrelia burgdorferi B31]
 gi|215981274|gb|EEC22081.1| dimethyladenosine transferase [Borrelia burgdorferi 156a]
 gi|218164599|gb|ACK74660.1| dimethyladenosine transferase [Borrelia burgdorferi ZS7]
 gi|223885702|gb|EEF56801.1| dimethyladenosine transferase [Borrelia burgdorferi 64b]
 gi|224512338|gb|EEF82722.1| dimethyladenosine transferase [Borrelia burgdorferi WI91-23]
 gi|225370706|gb|EEH00142.1| dimethyladenosine transferase [Borrelia burgdorferi 94a]
 gi|226233085|gb|EEH31838.1| dimethyladenosine transferase [Borrelia burgdorferi Bol26]
 gi|312147958|gb|ADQ30617.1| dimethyladenosine transferase [Borrelia burgdorferi JD1]
          Length = 281

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 149/286 (52%), Gaps = 24/286 (8%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           ++MN   N   S+K  L   KI P+K  GQN+L++ +I +KI ES    +   + EIG G
Sbjct: 6   LSMNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G +T++LL      +   E D ++  IL +   +  N  ++I+ D LK    K+ N + 
Sbjct: 66  LGAMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYKNENQ 119

Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            I +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +V
Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           L     K   + DI  + F+P+PKV ST +  IP  N I    E   K+ +  F  RRK 
Sbjct: 176 LVQSHFKVIKILDIGENNFYPAPKVKSTTLKLIPKKNNIKNFKE-FNKLVRTVFSNRRKK 234

Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L+ ++      K    EN L +     + R EN+S+E+F +I+N L
Sbjct: 235 LKNTIINFITNKATLRENFLKEY---LDKRPENISVEEFIQISNTL 277


>gi|268318145|ref|YP_003291864.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252]
 gi|262335679|gb|ACY49476.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252]
          Length = 266

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 143/268 (53%), Gaps = 32/268 (11%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQ+FL+D NI +KI  +  +     V+EIG G G LT +LL      +  IE D 
Sbjct: 7   PRKRLGQHFLVDPNIARKIVAALQAAPEDPVVEIGPGTGALTGLLLERYP-HLTAIEIDP 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139
           +    + ++ ++ P  L++ Q+D LKV++ +        + ++ NLPY I + +LF  + 
Sbjct: 66  R---AVAELKARWPE-LDVRQEDVLKVNWAELAEEKGGRLHVVGNLPYYITSPILFALLD 121

Query: 140 ADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTG-WRTKATMMFDISPHVF 195
           A       E+L    L+ Q+EV ER+ A   S  YG LSV    W T A ++F +S HVF
Sbjct: 122 AR------EALAEAVLMMQREVAERLVAPPGSKTYGILSVAAQLWATPA-LLFPVSRHVF 174

Query: 196 FPSPKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGEN 248
            P P+V S V+       +P ++P     E L+++ + AF +RRKTLR SL+RL   G  
Sbjct: 175 RPKPRVESAVVRLTFERPLPDVDP-----ELLRQVIRTAFNQRRKTLRNSLRRLLPSGTP 229

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
           L          RAE+LS +D+  +T  L
Sbjct: 230 LPDPWA---QARAEDLSPDDYVALTRWL 254


>gi|51598843|ref|YP_073031.1| dimethyladenosine transferase [Borrelia garinii PBi]
 gi|62900508|sp|Q660T2|RSMA_BORGA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|51573414|gb|AAU07439.1| dimethyladenosine transferase [Borrelia garinii PBi]
          Length = 281

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 150/286 (52%), Gaps = 24/286 (8%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           ++MN   N   S+K IL   KI P+K  GQN+L++ +I +KI ES    +   + EIG G
Sbjct: 6   LSMNINYNSITSIKQILKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G +T +LL      +   E D ++  IL +   +  N  ++I+ D LK    K+ N + 
Sbjct: 66  LGAMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYPNENK 119

Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            I +I +NLPYNI ++++   I  +    F + + L  QKE+ +RITA+ NS +Y   +V
Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           L      A  + DI  + F+P+PKV ST +  IP  N I    E   K+ +  F  RRK 
Sbjct: 176 LVQSHFTAIKIIDIGENNFYPAPKVKSTTLKLIPKKNNIKDFKE-FNKLIRTVFSGRRKK 234

Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L+ ++      K +  EN L +       R EN+S+E+F +I+N L
Sbjct: 235 LKNTIINFIKNKAILEENFLKEY---LGKRPENISVEEFIQISNNL 277


>gi|315187092|gb|EFU20849.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6578]
          Length = 280

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 17/267 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +++ + +   K  GQ+FL+  ++L++I  +     G  V EIG G G LT  LL  G
Sbjct: 10  MRELMARHGLRALKRFGQHFLVRDDVLRRIVRALDLHPGEQVWEIGPGIGALTAHLLDEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             +V+  E D+ F  IL++   + P  L I++ D ++  +   +    P R++ NLPYN+
Sbjct: 70  V-EVVGFEIDRGFVSILREEFGEAP--LTIVEGD-VRDTWRTVYQRRVPHRVVGNLPYNV 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++ +++      P       + Q+EV ER+ A   SP YG LSV+ G   +  ++F 
Sbjct: 126 ATSIILDFLEGGLVVP----QVFMVQREVAERMAASVGSPAYGALSVIVGTFYRCELLFH 181

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKR--LGG 246
           + P  F+P PKV S+V+   P  +P+    + S        F  RRK L+  L R  LG 
Sbjct: 182 VPPTAFYPRPKVWSSVLRLHPVTSPVSQEDIPSFLSFVWNLFRYRRKMLKNVLLRSPLGA 241

Query: 247 E------NLLHQAGIETNLRAENLSIE 267
           E      +LL + GI+  LRAE L ++
Sbjct: 242 EGVEEVGSLLERVGIDPTLRAEQLPLD 268


>gi|88801801|ref|ZP_01117329.1| dimethyladenosine transferase [Polaribacter irgensii 23-P]
 gi|88782459|gb|EAR13636.1| dimethyladenosine transferase [Polaribacter irgensii 23-P]
          Length = 267

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 20/264 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL D +I K IA++        V+EIG G G LT+ LL   A K+ V+E D++
Sbjct: 6   KKHLGQHFLTDESIAKNIADALSGNGYDDVLEIGPGMGILTKYLLPQKA-KITVMELDRE 64

Query: 82  -------FFPILK---DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
                   FP+     D S+ H     +++ D LK + +  F+    + II N PYNI T
Sbjct: 65  SVAYLHDTFPLEHLTLDTSAAH---FSVLEGDFLKKNIQDIFH-KKQVAIIGNFPYNIST 120

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +++F  I    + P +  +   FQKEV +RI  ++ S  YG +SVLT        +F + 
Sbjct: 121 QIVFKAIENREFVPEFAGM---FQKEVAKRIAEKEGSKVYGIMSVLTQAFFDVEYLFTVP 177

Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           P VF P PKV S VI  +   +  +P   +   ++ + AF +RRK LR SLK L   + L
Sbjct: 178 PDVFNPPPKVDSGVIRLVRKKDYSLPVDEKLFFRVVKTAFNQRRKMLRSSLKSLNLSDSL 237

Query: 251 HQAGIETNLRAENLSIEDFCRITN 274
            +  I T  R E LS+  F  +T 
Sbjct: 238 KEDPIFTK-RPEQLSVAAFIALTQ 260


>gi|282878182|ref|ZP_06286978.1| dimethyladenosine transferase [Prevotella buccalis ATCC 35310]
 gi|281299600|gb|EFA91973.1| dimethyladenosine transferase [Prevotella buccalis ATCC 35310]
          Length = 271

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 13/259 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DL+I K+IA++  +   I ++EIG G G LTQ L+    R+V  +E D+
Sbjct: 6   PKKNLGQHFLTDLSIAKRIADTVDACPSIPILEIGPGMGVLTQYLVE-KPREVKAVEIDR 64

Query: 81  QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    L++     P  R  II  D L++D  + F+      +  N PY+I +++ F  + 
Sbjct: 65  ESVAYLRE---NFPKLRDNIIGQDFLRMDLHQVFD-GQQFVLTGNYPYDISSQIFFKMLD 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     T + Q+EV +RI ++  +  YG LSVL         +F +  HVF P P
Sbjct: 121 YKDLIP---CCTGMIQREVAQRIASEPGNKAYGILSVLIQAWYHVEYLFTVDEHVFNPPP 177

Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAGI 255
           KV S VI    + ++ + C     K++ +  F +RRK LR SL++L    G +    AG 
Sbjct: 178 KVKSAVIRMTRNEVHDLGCDEMFFKRVVKTVFNQRRKMLRVSLRQLFPGEGASAEFYAGE 237

Query: 256 ETNLRAENLSIEDFCRITN 274
               R E LS+  F  +TN
Sbjct: 238 LMTKRPEQLSVAQFVALTN 256


>gi|193212495|ref|YP_001998448.1| dimethyladenosine transferase [Chlorobaculum parvum NCIB 8327]
 gi|226729768|sp|B3QMU5|RSMA_CHLP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|193085972|gb|ACF11248.1| dimethyladenosine transferase [Chlorobaculum parvum NCIB 8327]
          Length = 274

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/269 (34%), Positives = 134/269 (49%), Gaps = 15/269 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K    H  I  KK +GQNFLLD NI +KI   SG  +G  V+EIG G G L+  +L +  
Sbjct: 3   KVEYKHTHIAAKKKLGQNFLLDKNIPRKIVRESGIKEGDLVLEIGPGFGALSTAILEV-M 61

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
                IEKD +   + + I  +HP  + +I+ D LKV  E     S  + ++ N+PY+I 
Sbjct: 62  PSFTAIEKDPE---LARFIREEHPE-INLIEGDFLKVPLEPLTG-SGKLAVLGNIPYSIT 116

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +LF  +         ES TL+ Q EV +RITA   +  YG L+V          +F +
Sbjct: 117 SPILFRLLDNRH---LIESATLMMQHEVAQRITAVPGTKEYGILAVQMQAFCDVKYLFKV 173

Query: 191 SPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
              VF P P+V S VI  +P   NP+    E  +   + AF +RRKTL  +LK     + 
Sbjct: 174 GRAVFKPRPEVDSAVIRLVPKAQNPVEDS-EGFRTFVRRAFHQRRKTLWNNLKEYYNTS- 231

Query: 250 LHQAGIET-NLRAENLSIEDFCRITNILT 277
             +   ET  LRAE L++E    +   LT
Sbjct: 232 --EVPAETLKLRAEALTVEGLIELFEKLT 258


>gi|309378797|emb|CBX22623.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 259

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 132/263 (50%), Gaps = 21/263 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEK 78
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L    A+K+    V+E 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPL----AKKLNCLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW- 137
           D+     LK +     ++L I + D L+ DF    +I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTLP--FADKLVIHEGDVLQFDFN---SIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 138 -ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++ D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F 
Sbjct: 118 EVADDVV-----DMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFD 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P+PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  +  L   G
Sbjct: 173 PAPKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVG 232

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           I    RAE+++ E +  ++N L 
Sbjct: 233 INPQDRAEHIAPEKYVALSNYLA 255


>gi|307566374|ref|ZP_07628813.1| dimethyladenosine transferase [Prevotella amnii CRIS 21A-A]
 gi|307344951|gb|EFN90349.1| dimethyladenosine transferase [Prevotella amnii CRIS 21A-A]
          Length = 267

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 137/264 (51%), Gaps = 15/264 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DL+I K+IA++  S   I ++EIG G G LTQ L+    R++ V+E D 
Sbjct: 6   PKKNLGQHFLTDLSIAKRIADTVDSYPNIPILEIGPGMGVLTQYLVE-KHREIKVVEIDA 64

Query: 81  QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    L D   + PN R  II  D LK+D +  F       +  N PY+I +++ F  + 
Sbjct: 65  ESVKYLND---RFPNLRENIIGKDFLKMDLKNIF-YGKQFVLTGNYPYDISSQIFFKMLD 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     T + Q+EV  R+TA+  +  YG LS+L         +F +   VF P P
Sbjct: 121 YKDLIP---CCTGMIQREVAIRMTAKPCNKTYGILSILIQAWYDVEYLFTVDETVFNPPP 177

Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL----GGENLLHQAG 254
           KV S VI    +      C E+L K++ +  F +RRK LR SLK++        +  +  
Sbjct: 178 KVKSAVIRMTRNKVTSLGCDENLFKRLVKTVFNQRRKMLRVSLKQIIKSYSTSEVFFKQD 237

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           I T  R E LSI+ F  +TN++++
Sbjct: 238 IMTK-RPEQLSIKQFVELTNMVSE 260


>gi|288924741|ref|ZP_06418678.1| dimethyladenosine transferase [Prevotella buccae D17]
 gi|288338528|gb|EFC76877.1| dimethyladenosine transferase [Prevotella buccae D17]
          Length = 269

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 135/270 (50%), Gaps = 31/270 (11%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DLNI ++IA++  +  G+ V+EIG G G LTQ L+T   R+V  +E D+
Sbjct: 6   PKKNLGQHFLTDLNIARRIADTVDACPGLPVLEIGPGMGVLTQYLVT-KPREVKAVEIDR 64

Query: 81  -------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                  + FP L+D          II +D L++D    F    P  +  N PY+I +++
Sbjct: 65  ESVAYLHETFPTLRD---------NIIGEDFLRMDLNTVFG-GRPFVLTGNYPYDISSQI 114

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     T + Q+EV  R+ ++  +  YG LSVL         +F +   
Sbjct: 115 FFKMLDNRELIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYDVEYLFTVDED 171

Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL------GG 246
           VF P PKV S VI    + +  + C     K++ +  F +RRK LR SLK+L       G
Sbjct: 172 VFNPPPKVKSAVIRMTRNGVTDLGCDERLFKRLVKAVFNQRRKMLRVSLKQLFAGAQPSG 231

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E     A + T  R E L+I  F  +TN++
Sbjct: 232 E--FFTAEVMTR-RPEQLTIAQFVELTNVV 258


>gi|291543732|emb|CBL16841.1| dimethyladenosine transferase [Ruminococcus sp. 18P13]
          Length = 285

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 134/265 (50%), Gaps = 16/265 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL++  +  +IAE   +  G  V+EIG G G LT  L    A KV+ +E DQ+ 
Sbjct: 23  KGLGQNFLINPTVCPRIAELGNARPGFGVLEIGTGFGVLTAELAKR-ADKVVAVEIDQRL 81

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWIS 139
            P+L++  +   N ++I+  D +K+D            P+ + ANLPY I + +L   + 
Sbjct: 82  LPVLEETLADFDN-VKIVPGDIMKIDVAALLRQEFGGLPVAVCANLPYYITSPILMLLL- 139

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            ++  P   S+T++ QKE  +R+ AQ  +   G ++V   +  +A  +F +S   F P+P
Sbjct: 140 -ESRLPLT-SITVMVQKEAAQRLCAQVGTREAGAITVGVHYYGEARQLFPVSRGSFMPAP 197

Query: 200 KVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG------ENLLH 251
            V S VI    H NP P  L+     ++ +  F +RRKTL  SL  L G         L 
Sbjct: 198 NVDSAVIRIDLHENPHPEGLDEGFFFRMVKAGFSQRRKTLANSLASLLGIPKQAVYAALE 257

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
           QAG+    R E L++E    +  IL
Sbjct: 258 QAGLAPAARIEQLTMEQLFALARIL 282


>gi|148989985|ref|ZP_01821260.1| dimethyladenosine transferase [Streptococcus pneumoniae SP6-BS73]
 gi|147924645|gb|EDK75731.1| dimethyladenosine transferase [Streptococcus pneumoniae SP6-BS73]
          Length = 252

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           D + VIEIG G G LT+ L    A +V+  E D +  PIL D      N + ++ +D LK
Sbjct: 8   DQVNVIEIGPGIGALTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILK 65

Query: 107 VDF----EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           VD     + F N + PI+++ANLPY I T +L + I +    PF E   ++ QKEV +RI
Sbjct: 66  VDLAQHIQNFKNPNLPIKVVANLPYYITTPILMHLIESGI--PFSE-FVVMMQKEVADRI 122

Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES- 221
           +AQ N+  YG LS+   +   A + F +   VF P+P V S ++  +    P     +  
Sbjct: 123 SAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDEN 182

Query: 222 -LKKITQEAFGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCR 271
              K+++ +F  RRKTL  +L    G+           L QAG+  ++R E LS+ +F  
Sbjct: 183 FFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAG 242

Query: 272 ITNIL 276
           + + L
Sbjct: 243 LADAL 247


>gi|134097408|ref|YP_001103069.1| dimethyladenosine transferase [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004602|ref|ZP_06562575.1| dimethyladenosine transferase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910031|emb|CAM00143.1| dimethyladenosine transferase (rRNA methylation) [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 282

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 131/274 (47%), Gaps = 14/274 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     I P K +GQNF+ D N +++I  ++       V+E+G G G+LT  LL + 
Sbjct: 7   VRRLAGELGIRPTKKLGQNFVHDPNTVRRIVAAASLTAEDVVLEVGPGLGSLTLALLPV- 65

Query: 70  ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L+  +S++      RL +++ DAL+V  +   +   P  ++ANL
Sbjct: 66  AGAVTAVEIDPVLAARLERTASEYSPALAGRLRVVEADALRVRADDLGD-RRPTALVANL 124

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++    P     L ++ Q EV +R+ A+  +  YG  S    W     
Sbjct: 125 PYNVAVPVVLHLLA--ELPTLRHGL-VMVQSEVADRMAARPGNRTYGVPSAKAAWFADVR 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
               +  +VF+P P V S ++ F     P       + ++   AF +RRKTLR +L    
Sbjct: 182 RAGPVPRNVFWPVPNVDSGLVSFTRVEPPSEVARADVFRVVDAAFAQRRKTLRAALSGWA 241

Query: 246 G-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           G     E LL  AG++   R E L I DF RI  
Sbjct: 242 GSAARAERLLRAAGVDPAARGEQLEIADFARIAE 275


>gi|33594223|ref|NP_881867.1| dimethyladenosine transferase [Bordetella pertussis Tohama I]
 gi|62900576|sp|Q7VU11|RSMA_BORPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33564298|emb|CAE43596.1| dimethyladenosine transferase [Bordetella pertussis Tohama I]
 gi|332383637|gb|AEE68484.1| dimethyladenosine transferase [Bordetella pertussis CS]
          Length = 265

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 15/252 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQ+FL D ++++ I  + G      V+EIG G   LT+ LL  +     + I++D 
Sbjct: 7   RKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDRIDHLTAVEIDRD- 65

Query: 81  QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               +   +  Q+P  RL +++ DAL VDF +F      +R++ NLPYNI + LLF+ + 
Sbjct: 66  ----LAARLRRQYPAERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLMG 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A            + Q+EV +R+ A+  S  Y RLSV+   R +   +FD++P  F P P
Sbjct: 119 AAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEKLFDVAPEAFDPPP 175

Query: 200 KVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           +V S V+    +P     P    + + +   AF +RRK LR+ L          + GI  
Sbjct: 176 RVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLDDWAALTPWDELGIAP 235

Query: 258 NLRAENLSIEDF 269
             RAE + +  F
Sbjct: 236 TARAEEVGVAQF 247


>gi|146298606|ref|YP_001193197.1| dimethyladenosine transferase [Flavobacterium johnsoniae UW101]
 gi|189028808|sp|A5FLP4|RSMA_FLAJ1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146153024|gb|ABQ03878.1| dimethyladenosine transferase [Flavobacterium johnsoniae UW101]
          Length = 261

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/269 (36%), Positives = 141/269 (52%), Gaps = 31/269 (11%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLT--LGARKVI 74
           K+  KK++GQ+FL D +I K IA++  SL G   V+EIG G G LT+ LL   +  R   
Sbjct: 3   KVKAKKHLGQHFLKDESIAKAIADTL-SLKGYDEVLEIGPGMGVLTKYLLDKPVNTR--- 58

Query: 75  VIEKDQQF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           VIE D +        +P LKD         +II +D LK +  + +  +    II N PY
Sbjct: 59  VIEIDTESVEYLGVNYPKLKD---------KIISEDFLKYNINQVYE-NKQFAIIGNFPY 108

Query: 128 NIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           NI ++++F  +   D  P F    + +FQKEV ERI  +K S  YG LSVL         
Sbjct: 109 NISSQIVFRTLEFRDQIPEF----SGMFQKEVAERICEKKGSKTYGILSVLAQAFYDTEY 164

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           +F +S +VF P PKV S V+      +  +PC  +    + + AF +RRKTLR SLK L 
Sbjct: 165 LFTVSENVFIPPPKVKSGVMKMTRKEDYSLPCGEKLFFTVVKTAFQQRRKTLRNSLKTLN 224

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITN 274
             + L +  I  + R E LS+E+F  +T 
Sbjct: 225 LSDKLRE-DIIFDKRPEQLSVEEFIVLTQ 252


>gi|225551958|ref|ZP_03772898.1| dimethyladenosine transferase [Borrelia sp. SV1]
 gi|225370956|gb|EEH00386.1| dimethyladenosine transferase [Borrelia sp. SV1]
          Length = 281

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 148/286 (51%), Gaps = 24/286 (8%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           ++MN   N   S+K  L   KI P+K  GQN+L++ +I +KI ES    +   + EIG G
Sbjct: 6   LSMNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G +T++LL      +   E D ++  IL +   +  N  ++I+ D LK    K+ N + 
Sbjct: 66  IGAMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYKNENQ 119

Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            I +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +V
Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVFTIQKELADRITAKINSKNYSSFTV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           L      A  + DI    F+P+PKV ST +  +P  N I    E   K+ +  F  RRK 
Sbjct: 176 LVQSHFNAIKILDIGESNFYPAPKVKSTTLKLVPKKNNIKNFKE-FNKLVRTVFSSRRKK 234

Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L+ ++      K    EN L +     + R EN+S+E+F +I+N L
Sbjct: 235 LKNTIINFIANKATLRENFLKEY---LDKRPENISVEEFIQISNTL 277


>gi|115252788|emb|CAK98224.1| putative dimethyladenosine transferase protein [Spiroplasma citri]
          Length = 282

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 139/268 (51%), Gaps = 19/268 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+ KK  GQNFL + + +  I +S+  L    ++EIG G G LT  +L L A K++ +E 
Sbjct: 13  IVVKKSKGQNFLTNTHFINLIVDSAFDLPNTNILEIGPGMGALTSSIL-LKANKLVCVEI 71

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGTRLL 134
           D      L  +  +  N L IIQ D L +D EK F      ++PI II+N+PY I + ++
Sbjct: 72  DSTLVEYL-TLKFKDQN-LTIIQADILTLDLEKLFLTEFLDNNPISIISNIPYYITSPII 129

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +      P  + + L+ QKEVGERI AQ NS +Y  LSV+  + +    +  +  + 
Sbjct: 130 FKLLKIKN--PKVKEIILMMQKEVGERIMAQPNSKNYNSLSVVCQFYSDIEKVSLVGRNN 187

Query: 195 FFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSL-----KRLGG 246
           F P+PKV S V+ F   LN   P     +   K  +  F  +RKT+  +L      +   
Sbjct: 188 FVPAPKVDSIVLKF--KLNKKYPALINDKEFIKFIRMMFATKRKTILNNLAIIVNNKTLA 245

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274
           E++L +     NLR+ENLS+ DF  + N
Sbjct: 246 EDILLKLNYALNLRSENLSLNDFYLLYN 273


>gi|120437829|ref|YP_863515.1| dimethyladenosine transferase [Gramella forsetii KT0803]
 gi|117579979|emb|CAL68448.1| dimethyladenosine transferase [Gramella forsetii KT0803]
          Length = 281

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/254 (38%), Positives = 132/254 (51%), Gaps = 11/254 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL D NI  KIA++        V+EIG G G LT+ LL   A +V VIE D +
Sbjct: 26  KKHLGQHFLTDENIAAKIADTLSYNGYEKVLEIGPGTGVLTKHLLEKDA-EVHVIEIDTE 84

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA- 140
               L+  S     R  I + D LK D  + F       II N PYNI T+++F  +   
Sbjct: 85  SVEYLE--SHYLHLRGRIHEKDFLKHDLGQIFG-QEQFAIIGNFPYNISTQIVFKVLQMR 141

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D  P F    + +FQKEV +RI  ++ +  YG LSVLT    +A  +F + P VF P PK
Sbjct: 142 DQIPEF----SGMFQKEVAKRICEKEGNKTYGILSVLTQAFYEAEYLFTVPPSVFNPPPK 197

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S V+      N    C E L  +I + +F +RRKTLR SLK L   + L +  I   L
Sbjct: 198 VDSGVLRLRRKENFSLDCNEKLFFRIVKTSFNQRRKTLRNSLKSLNLPDNLREDAI-FGL 256

Query: 260 RAENLSIEDFCRIT 273
           R E L  + F  +T
Sbjct: 257 RPEQLGFQQFIELT 270


>gi|212278087|gb|ACJ23058.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 127/257 (49%), Gaps = 13/257 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+PK
Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236

Query: 259 LRAENLSIEDFCRITNI 275
            RAE+++ E  C +  +
Sbjct: 237 DRAEHIAPEKICGVEQL 253


>gi|289739481|gb|ADD18488.1| mitochondrial transcription factor [Glossina morsitans morsitans]
          Length = 334

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 146/297 (49%), Gaps = 23/297 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVI-EIGAGPGNLTQMLLT 67
           +L+ I+  Y +   K + QNFL+D  +  KI +  G +D   V+ E+G GPG +T+ ++ 
Sbjct: 20  TLRDIVKLYNLRAVKQLSQNFLMDERLTDKIVKQCGRIDSKDVVLEVGPGPGGITRSIIR 79

Query: 68  LGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
              + ++V+EKD +F P   +L++  +    +++I  DD L  + E    +I+  + +I 
Sbjct: 80  REPKHIVVVEKDARFLPTLELLRECVAPLNIQMQIFVDDILTFNIENHLPDITQRLHLIG 139

Query: 124 NLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           NLP++I TRLL NW+         +      +TL FQKEV ERI A        RLSV++
Sbjct: 140 NLPFSISTRLLINWLEDVSLRRGAFRRHDTCMTLTFQKEVAERICAPFGHEQRCRLSVMS 199

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237
              T+  + F I    F P P+V   V+  +P   P        ++K+ +  F  R+K  
Sbjct: 200 QIWTQPFLKFVIPGTAFVPKPEVDVGVVKLMPLKEPKTTLDFRLVEKVVRHIFNMRQKYC 259

Query: 238 RQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRI----TNILTDNQDI 282
           R+    L   +        L  +A +E  LR   LS+++  R+    +N +  N ++
Sbjct: 260 RRGFGTLFPPDQRESVTFELFKEADVEDTLRPFQLSVDECLRLATAYSNFIQKNPEV 316


>gi|77165198|ref|YP_343723.1| 16S rRNA dimethylase [Nitrosococcus oceani ATCC 19707]
 gi|254434334|ref|ZP_05047842.1| dimethyladenosine transferase [Nitrosococcus oceani AFC27]
 gi|119365041|sp|Q3JAF3|RSMA_NITOC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|76883512|gb|ABA58193.1| dimethyladenosine transferase [Nitrosococcus oceani ATCC 19707]
 gi|207090667|gb|EDZ67938.1| dimethyladenosine transferase [Nitrosococcus oceani AFC27]
          Length = 264

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 133/255 (52%), Gaps = 9/255 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80
           +K  GQ+FL D  +++++  +        ++EIG G G LT  LL  LG  + I +++D 
Sbjct: 9   RKRFGQHFLHDKGVIERLLRAINPQLNDLMVEIGPGQGALTLPLLHCLGHLEAIELDRDL 68

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             + +++  +S+   RL  +  D+L  DF    + +  +R++ NLPYNI T LLF+ +  
Sbjct: 69  AAY-LVERCASEGNLRLHNV--DSLTFDFRTLAHENRRLRVVGNLPYNISTPLLFHLLGQ 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  E +  + Q+EV  R+ A+     YGRLSV+  +  +   +F +    F P PK
Sbjct: 126 IG---ILEDMHFMLQREVVTRLAAKPGGKDYGRLSVMVQFYCEVEPLFTVKSGAFVPPPK 182

Query: 201 VTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  IPH   +   +   +L ++  +AF +RRKTL  +LK L     L   GI+  
Sbjct: 183 VDSMVVRLIPHRPSLAPNISHGALNRVVSQAFSQRRKTLANALKGLLSSAELIALGIDPR 242

Query: 259 LRAENLSIEDFCRIT 273
            R E +S+ED+  +T
Sbjct: 243 QRPETISLEDYLALT 257


>gi|328883016|emb|CCA56255.1| Dimethyladenosine transferase [Streptomyces venezuelae ATCC 10712]
          Length = 291

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL   
Sbjct: 19  IRELAAALGVRPTKQKGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 77

Query: 70  ARKVIVIEKDQQFFPILKD-ISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V  +E D      L   I+++ P   +R  ++  DA+ V+         P  ++ANL
Sbjct: 78  ADRVTAVEIDDVLAAALPSTIAARMPARADRFALVHSDAMHVE---ELPGPPPTALVANL 134

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  + +P    +L ++ Q EV +R+ A+  +  YG  SV   W  +  
Sbjct: 135 PYNVAVPVLLHML--ERFPSIERTL-VMVQAEVADRLAAKPGNKVYGVPSVKANWYAEVK 191

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKR 243
               I  +VF+P+P V S ++  +    P+      + +  +   AF +RRKTLR +L  
Sbjct: 192 RAGAIGRNVFWPAPNVDSGLVSLVRRAEPLATTATRQEVFAVVDAAFAQRRKTLRAALAT 251

Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
             G     E  L +AGI    R E L++E+F RI  
Sbjct: 252 WAGSPAAAEEALVKAGISPQARGEGLTVEEFARIAE 287


>gi|212278085|gb|ACJ23057.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 127/257 (49%), Gaps = 13/257 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+PK
Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236

Query: 259 LRAENLSIEDFCRITNI 275
            RAE+++ E  C +  +
Sbjct: 237 DRAEHIAPEKVCGVEQL 253


>gi|33603074|ref|NP_890634.1| dimethyladenosine transferase [Bordetella bronchiseptica RB50]
 gi|62900581|sp|Q7WG20|RSMA_BORBR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33568705|emb|CAE34463.1| dimethyladenosine transferase [Bordetella bronchiseptica RB50]
          Length = 265

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 15/252 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQ+FL D ++++ I  + G      V+EIG G   LT+ LL  +     + I++D 
Sbjct: 7   RKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDRIDHLTAVEIDRD- 65

Query: 81  QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               +   +  Q+P  RL +++ DAL VDF +F      +R++ NLPYNI + LLF+ + 
Sbjct: 66  ----LAARLRRQYPAERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLMG 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A            + Q+EV +R+ A+  S  Y RLSV+   R +   +FD++P  F P P
Sbjct: 119 AAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEKLFDVAPEAFDPPP 175

Query: 200 KVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           +V S V+    +P     P    + + +   AF +RRK LR+ L          + GI  
Sbjct: 176 RVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLGDWAALTPWDELGIAP 235

Query: 258 NLRAENLSIEDF 269
             RAE + +  F
Sbjct: 236 TARAEEVGVAQF 247


>gi|284033600|ref|YP_003383531.1| dimethyladenosine transferase [Kribbella flavida DSM 17836]
 gi|283812893|gb|ADB34732.1| dimethyladenosine transferase [Kribbella flavida DSM 17836]
          Length = 295

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 20/281 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLT 67
           ++++ +   + P K  GQNF++D N +++I  ++  LD  G TV+EIG G G+LT  LL 
Sbjct: 20  VRSLAASLGLRPTKQRGQNFVIDPNTVRRIVRAA-ELDPAGETVLEIGPGLGSLTLALLA 78

Query: 68  LGARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
            G R V  +E D      L   I+S  P   +R  +++ DA+ V  E    I +P   +A
Sbjct: 79  EGHR-VTAVEIDPLLAAALPATIASYAPAQADRFTVVEADAMAVQAEA---IGTPTACVA 134

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L + ++    P     L ++ Q EV +R+ A   S  YG  S    W  +
Sbjct: 135 NLPYNVAVPVLLHLLA--IAPSLRHGL-VMVQSEVADRLAAPPGSRTYGVPSAKAAWYAE 191

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLK 242
                 I  +VF+P+P V S ++ F     P      + +  + + AF +RRKT+R +L 
Sbjct: 192 VRRAGPIGRNVFWPAPNVDSGLVAFARREPPATSASRQEVFAVIEAAFSQRRKTIRSALA 251

Query: 243 RLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           R   +      +L  AG++  LR E L I DF  +     D
Sbjct: 252 RWVPDRPTLDAVLAAAGVDPGLRGEMLGIADFAALAGARHD 292


>gi|253581082|ref|ZP_04858342.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847618|gb|EES75588.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 290

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 20/280 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  Y    +K  GQNFL+D ++L KI +S+       V+EIG G G +TQ L    AR+
Sbjct: 15  VLQKYNFAFQKRFGQNFLIDTHVLDKIIDSAQITKDDFVLEIGPGIGTMTQYLAEA-ARE 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNI 129
           V  +E D+   PIL D      N + +I +D LKVD  +     N   PI+++ANLPY I
Sbjct: 74  VAAVEIDKTLLPILDDTLKDWDN-VTVINNDILKVDIRQLALEKNQGRPIKVVANLPYYI 132

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++             +S+T++ QKEV +R+     +  YG LS+   +  K  ++ +
Sbjct: 133 TTPIIMGLFENQVP---VDSITIMVQKEVADRMQVGPGTKDYGALSLAVQYYAKPKIVAN 189

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLK---- 242
           + P+ F P PKV S VI    +  P P  +++ K   +I + +F +RRKTL   LK    
Sbjct: 190 VPPNCFMPRPKVGSAVIRLERYEKP-PVEVKNEKLMFRIIRASFNQRRKTLVNGLKNSQE 248

Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               +   E  L   G+  ++R E L++  F ++ N  T+
Sbjct: 249 IPFSKEQIEQALGMCGLSLSVRGEALTLAQFAQLANAFTE 288


>gi|317495931|ref|ZP_07954294.1| dimethyladenosine transferase [Gemella moribillum M424]
 gi|316914108|gb|EFV35591.1| dimethyladenosine transferase [Gemella moribillum M424]
          Length = 286

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 134/268 (50%), Gaps = 16/268 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  +    KK +GQNFL+D NIL +I + +G  + + VIEIG G G+LT+ +    A+K
Sbjct: 11  ILKKHGFTFKKSLGQNFLIDANILNRIIDGAGINETVGVIEIGPGIGSLTEAIAK-KAKK 69

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPYN 128
           VI  E D +  PIL +  + + N +EII +D LKVD +       +    I ++ANLPY 
Sbjct: 70  VISFEIDGRLLPILSETLADY-NNVEIINNDILKVDVDNIIAEKMSDCDKIMVVANLPYY 128

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L + I         +   ++ Q+EV  R+ A+  +  Y  L++L  + T    +F
Sbjct: 129 ITTPILTHLIENTEK---IDGYVVMMQREVANRLNAKVGTKDYNSLTILLNYYTDVEYLF 185

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------- 241
            +   VF P+P V S V+  +          +   K  +  F +RRKTL  +L       
Sbjct: 186 TVPKKVFVPAPNVESAVVKIMTKEKKEFEVDQKFFKFVRSCFVQRRKTLLNNLISSYGKD 245

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDF 269
           K+   +     + IE   R+E L++ +F
Sbjct: 246 KKQDLQASCFDSEIEATRRSETLTLTEF 273


>gi|315607755|ref|ZP_07882748.1| dimethyladenosine transferase [Prevotella buccae ATCC 33574]
 gi|315250224|gb|EFU30220.1| dimethyladenosine transferase [Prevotella buccae ATCC 33574]
          Length = 317

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 135/264 (51%), Gaps = 19/264 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DLNI ++IA++  +  G+ V+EIG G G LTQ L+T   R+V  +E D+
Sbjct: 54  PKKNLGQHFLTDLNIARRIADTVDACPGLPVLEIGPGMGVLTQYLVT-KPREVKAVEIDR 112

Query: 81  QFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    L +   + H N   II +D L++D    F    P  +  N PY+I +++ F  + 
Sbjct: 113 ESVAYLHETFPTLHDN---IIGEDFLRMDLNTVFG-GRPFVLTGNYPYDISSQIFFKMLD 168

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     T + Q+EV  R+ ++  +  YG LSVL         +F +   VF P P
Sbjct: 169 NRELIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYDVEYLFTVDEDVFNPPP 225

Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL------GGENLLHQ 252
           KV S VI    + +  + C     K++ +  F +RRK LR SLK+L       GE     
Sbjct: 226 KVKSAVIRMTRNGVTDLGCDERLFKRLVKAVFNQRRKMLRVSLKQLFAGAQPSGE--FFT 283

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
           A + T  R E L+I  F  +TN++
Sbjct: 284 AEVMTR-RPEQLTIAQFVELTNVV 306


>gi|225734155|pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
           Resolution
 gi|225734156|pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
           Resolution
 gi|225734157|pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
 gi|225734160|pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
           And Sah
          Length = 249

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+ L+   +LKKIAE     +G TV+E+G G GNLT++LL    +K+ VIE D++
Sbjct: 6   KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LK I  +   RLE+I +DA K     F ++   ++++ NLPYN+ + ++ N +   
Sbjct: 66  MVENLKSIGDE---RLEVINEDASKFP---FCSLGKELKVVGNLPYNVASLIIENTVYNK 119

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P       + QKEV E++  +K++   G LSV          +  + P  F P PKV
Sbjct: 120 DCVPLA---VFMVQKEVAEKLQGKKDT---GWLSVFVRTFYDVNYVMTVPPRFFVPPPKV 173

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S VI  + +       L++ KK   + F  RRK LR+ +     E LL +AGI  + R 
Sbjct: 174 QSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIP----EELLKEAGINPDARV 229

Query: 262 ENLSIEDFCRITNILTDN 279
           E LS+EDF ++  ++ D+
Sbjct: 230 EQLSLEDFFKLYRLIEDS 247


>gi|194246621|ref|YP_002004260.1| dimethyladenosine transferase [Candidatus Phytoplasma mali]
 gi|193806978|emb|CAP18413.1| Dimethyladenosine transferase (high level kasugamycin resistance
           protein ksgA) (Kasugamycin dimethyltransferase)
           [Candidatus Phytoplasma mali]
          Length = 269

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 134/263 (50%), Gaps = 20/263 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D+N+LKKI  +  +L    V+EIG G G LTQ ++ L ++K +  E D+ 
Sbjct: 5   KKKYGQNFLSDINLLKKIV-NEANLKNKNVVEIGPGKGALTQFII-LQSKKFLAYEIDET 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNI--SSPIRIIANLPYNIGTRLLFNWI 138
             P L     +  N  +II DD LK +  E FFN      I +I NLPY I T L+F ++
Sbjct: 63  LKPFL---IFEKSNNFKIIYDDFLKRNLKEDFFNYFGEEKITLIGNLPYYITTPLIFKFL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                     S T++ QKEVG R+ A+ N+ HY  LSV+  + TK   + ++  ++F P 
Sbjct: 120 EEKQI----NSFTIMLQKEVGLRLLAKPNTKHYNALSVIIQFLTKIKKILEVKKNMFKPK 175

Query: 199 PKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR------LGGENLL 250
           PKV S V+ F      N       +     + +F ++RKTL  +L +             
Sbjct: 176 PKVDSIVLKFDKKNQKNLTINFKNNFFIFVKISFSQKRKTLINNLVKGYKINKKKIIIFF 235

Query: 251 HQAGIETNLRAENLSIEDFCRIT 273
               I+ ++RAE +SIE F  I+
Sbjct: 236 DNNNIQYHIRAEQISIELFKEIS 258


>gi|15606866|ref|NP_214246.1| dimethyladenosine transferase [Aquifex aeolicus VF5]
 gi|27151558|sp|O67680|RSMA_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|2984099|gb|AAC07637.1| dimethyladenosine transferase [Aquifex aeolicus VF5]
          Length = 248

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+ L+   +LKKIAE     +G TV+E+G G GNLT++LL    +K+ VIE D++
Sbjct: 5   KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LK I  +   RLE+I +DA K     F ++   ++++ NLPYN+ + ++ N +   
Sbjct: 65  MVENLKSIGDE---RLEVINEDASKFP---FCSLGKELKVVGNLPYNVASLIIENTVYNK 118

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P       + QKEV E++  +K++   G LSV          +  + P  F P PKV
Sbjct: 119 DCVPLA---VFMVQKEVAEKLQGKKDT---GWLSVFVRTFYDVNYVMTVPPRFFVPPPKV 172

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S VI  + +       L++ KK   + F  RRK LR+ +     E LL +AGI  + R 
Sbjct: 173 QSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIP----EELLKEAGINPDARV 228

Query: 262 ENLSIEDFCRITNILTDN 279
           E LS+EDF ++  ++ D+
Sbjct: 229 EQLSLEDFFKLYRLIEDS 246


>gi|317153209|ref|YP_004121257.1| dimethyladenosine transferase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943460|gb|ADU62511.1| dimethyladenosine transferase [Desulfovibrio aespoeensis Aspo-2]
          Length = 261

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 131/265 (49%), Gaps = 14/265 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H+K   KK +GQNFL D NI ++I ++       T+IEIG G G LT  +      +  V
Sbjct: 7   HHKA--KKSLGQNFLTDQNICRRIVDAIAPGPTDTIIEIGPGQGALTGFIAQAHPARFSV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D     +   +   +P+ +E+I+ DAL+  +E   N     +I+ NLPYN+G++L++
Sbjct: 65  IELDDG---LADRLEGAYPD-IEVIRADALRFPWES-LNAGERCKIVGNLPYNVGSKLIW 119

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +S        +    + Q EV  R+TA+     YG L+           +F + P VF
Sbjct: 120 DIVSRVQ---TLDRAVFMVQHEVALRLTAEPGCKAYGGLTAWVRNFADTRYLFKVPPTVF 176

Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLH 251
            P PKV S V+ F+P  +   P   ++L ++ +  F KRRK L   LK L     EN   
Sbjct: 177 RPQPKVDSAVVAFVPRPVGEWPRSPQALDRLIKMLFQKRRKQLSNILKPLWSQEIENWFA 236

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
             GI    R E LS + F  ++ ++
Sbjct: 237 SQGISPMARPETLSPQQFLELSALI 261


>gi|311086456|gb|ADP66537.1| dimethyladenosine transferase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 220

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 112/211 (53%), Gaps = 14/211 (6%)

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIG 130
           ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     IRI  NLPYNI 
Sbjct: 7   ELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLIRIFGNLPYNIS 64

Query: 131 TRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           T L   LF  I         + +  + QKEV ER+ +   +  YGRLS+++ +     ++
Sbjct: 65  TSLIIFLFKQIKV------IQDMNFMLQKEVAERLISTPGNKSYGRLSIISQYYCDIKIL 118

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            ++SP  F P PKV S  I+  PH N       +  L  IT++AF  RRK LR SLK L 
Sbjct: 119 LNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKILRHSLKNLF 178

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            E  L +  I +NLRAEN+S+  +C++ N L
Sbjct: 179 SEKELIKLEINSNLRAENISVSQYCKLANYL 209


>gi|225850076|ref|YP_002730310.1| dimethyladenosine transferase [Persephonella marina EX-H1]
 gi|254807878|sp|C0QUE5|RSMA_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225645312|gb|ACO03498.1| dimethyladenosine transferase [Persephonella marina EX-H1]
          Length = 265

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 126/255 (49%), Gaps = 14/255 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK  GQ+ L+   +++KI E     +  TV+EIG G G LT+ +L    + V  IE D+
Sbjct: 6   PKKRFGQHLLISKGVIQKIVECLDIKEDDTVVEIGVGTGQLTEEILRRNPKIVYGIEIDK 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +PI+++      N + +I++D   VD  K       I++  NLPYN+ + +L N    
Sbjct: 66  TVYPIIEERFKDFKNFV-LIKEDFFDVDLRKL--TDGKIKLTGNLPYNVASHILVN---T 119

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             +    +    + QKEV +++  +  +  Y  +SV          +  +    F P PK
Sbjct: 120 AFYIDILQLAVFMIQKEVAQKLVGKPKTKDYTFMSVFLQTFFDIDYVMSVPARFFSPPPK 179

Query: 201 VTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           VTS VI  IP    +P  L+ +KK        F  RRK LR  + +    ++L +AGI+ 
Sbjct: 180 VTSAVIRMIPK-EKLPVSLDHMKKYKNFVSMLFSNRRKMLRSKIDK----DILERAGIDP 234

Query: 258 NLRAENLSIEDFCRI 272
             RAE LS++DF R+
Sbjct: 235 KARAEELSVDDFIRL 249


>gi|212278077|gb|ACJ23053.1| KsgA [Neisseria gonorrhoeae]
          Length = 248

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 125/260 (48%), Gaps = 24/260 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
                          L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IV-------------LVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 109

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+PK
Sbjct: 110 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 165

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 166 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 225

Query: 259 LRAENLSIEDFCRITNILTD 278
            RAE+++ E +  ++N L D
Sbjct: 226 DRAEHIAPEKYVALSNYLAD 245


>gi|16329260|ref|NP_439988.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
 gi|27151564|sp|P72666|RSMA_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|1651740|dbj|BAA16668.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
          Length = 284

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 141/276 (51%), Gaps = 23/276 (8%)

Query: 21  PKKYMGQNFLLDLNILKKI---------AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           P+K  GQ++L     L+ I         A  SGSL    ++EIG G G LT+ LL  G  
Sbjct: 5   PRKRFGQHWLNHEPTLQAIVAAADIQSGAPQSGSLRD-RLLEIGPGMGVLTKQLLATG-N 62

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI-RIIANLPY 127
            V+ +E D+     L+    Q  N L +++ D L +D       F   SP+ +++AN+PY
Sbjct: 63  PVVAVELDRDLCLKLRKKLGQRENFL-LLEGDVLILDLNALLQDFPQFSPLNKVVANIPY 121

Query: 128 NIGTRLLFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           NI + +L   +     P  P +E++ LL QKE+ ER+TAQ ++  YG LSV   +  +  
Sbjct: 122 NITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPSTKAYGALSVRMQYLARVD 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            + D+ P  F P PKV S VI   P+ +  +P     L ++    F  RRK LR +LK L
Sbjct: 182 WIVDVPPKAFTPPPKVDSAVIRLTPYPVEQLPGDRRLLDQLLCLGFANRRKMLRNNLKGL 241

Query: 245 GGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   LL Q  + +  RAE+LS+E +  +TN+L
Sbjct: 242 IAPEQLTTLLEQLALPSTARAEDLSLEQWLELTNLL 277


>gi|323490982|ref|ZP_08096176.1| dimethyladenosine transferase [Planococcus donghaensis MPA1U2]
 gi|323395338|gb|EGA88190.1| dimethyladenosine transferase [Planococcus donghaensis MPA1U2]
          Length = 292

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 141/283 (49%), Gaps = 24/283 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I++ Y +  KK +GQNFL+D NIL+KI   +        IEIG G G LT+ L    A
Sbjct: 12  QQIMTKYNLKVKKSLGQNFLIDPNILRKIVGQANLTKKSAAIEIGPGIGALTEHL-AREA 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLP 126
            KV+  E DQ+  P+L D  S + N + I+  D LK D +   +        I ++ANLP
Sbjct: 71  GKVLAFEIDQRLLPVLADTLSPYDN-ISIVHSDILKADVQAAIDSELAGYDDIVVVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +           + ++ QKEV ERITA+  +  YG LS+   + T+A M
Sbjct: 130 YYVTTPIILKLLLEKLP---IRGMVVMLQKEVAERITAKPGTKAYGSLSIAIQYYTQAEM 186

Query: 187 MFDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
              +   VF P P V S VI      +P +  I    +    +T+ +F +RRKT+  +L+
Sbjct: 187 ALTVPKSVFLPQPNVDSAVIRMTKREVPEVEVI--NEDFFFSVTRGSFVQRRKTILNNLQ 244

Query: 243 RL---GGE------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
                G E        L +A I+   R E L+I++F  +++ L
Sbjct: 245 VAMPSGKEKKEFILKALEEAEIDPTRRGETLTIKEFGLLSDKL 287


>gi|15828486|ref|NP_325846.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase)(16S rRNA
           dimethylase)(high level kasugamycin resistance protein
           KSGA) (kasugamycin dimethyltransferase) [Mycoplasma
           pulmonis UAB CTIP]
 gi|27151595|sp|Q98RJ3|RSMA_MYCPU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|14089428|emb|CAC13188.1| DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N',
           N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE)(16S RRNA
           DIMETHYLASE)(HIGH LEVEL KASUGAMYCIN RESISTANCE PROTEIN
           KSGA) (KASUGAMYCIN DIMETHYLTRANSFERASE) [Mycoplasma
           pulmonis]
          Length = 252

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 131/254 (51%), Gaps = 17/254 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQNFL+D NI+ KI +SS  ++   +IEIG G G LT++L+   A KV+  E DQ
Sbjct: 3   AKKRFGQNFLIDQNIINKIVDSS-EVENRNIIEIGPGKGALTKILVK-KANKVLAYEIDQ 60

Query: 81  QFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               IL + ISS++     +I  D LK +F+K    S    I+AN+PY I + ++F  I 
Sbjct: 61  DMVNILNQQISSKN---FVLINKDFLKEEFDK----SQNYNIVANIPYYITSDIIFKIIE 113

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  ++  TL+ QKEV  RI A++N   + +LS+   +     ++ D+S + F P P
Sbjct: 114 N---HQIFDQATLMVQKEVALRILAKQNDSEFSKLSLSVQFFFDVFLICDVSKNSFRPIP 170

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQAGI 255
           KV S VI  +   N      +   +  + AF  RRKTL  +LK    E            
Sbjct: 171 KVDSAVIKLVKKKNKDFSLWKEYFEFLKIAFSSRRKTLLNNLKYFFNEQKILKFFELKNY 230

Query: 256 ETNLRAENLSIEDF 269
           +  +RA+N+  EDF
Sbjct: 231 DPKVRAQNIKNEDF 244


>gi|257068507|ref|YP_003154762.1| dimethyladenosine transferase [Brachybacterium faecium DSM 4810]
 gi|256559325|gb|ACU85172.1| dimethyladenosine transferase [Brachybacterium faecium DSM 4810]
          Length = 295

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 136/280 (48%), Gaps = 17/280 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     I P K  GQNF++D N ++ I   +G   G  V+E+G G G+LT  LL
Sbjct: 15  ARDIRELAEAAGIRPSKQRGQNFVMDPNTVRTIVGRAGVEPGQAVLEVGPGLGSLTLGLL 74

Query: 67  TLGARKVIVIEKDQ---QFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRII 122
             G  +V+ +E D+   +  P+         +R  ++  DAL+V +        +P  ++
Sbjct: 75  EAGG-EVVAVELDRGLAELLPLTLRARGVQEDRFRLVHADALQVTELPALPGAGAPASLV 133

Query: 123 ANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           ANLPYN+ T +L   +   D+      S  ++ Q EV +R+TA   S  YG  SV   W 
Sbjct: 134 ANLPYNVATPILLTILERFDSI----RSALVMVQSEVVDRLTAGPGSRTYGGPSVKAAWY 189

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQ 239
            +A     IS  +F+P P V S ++  + H  P+      E++  +   AF +RRKTLR 
Sbjct: 190 GRAVHAGRISRQIFWPVPNVDSALVELVRHEEPLGTAAERETVFAVVDAAFAQRRKTLRA 249

Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           +L    G     E +L  AGI+   R E L IE+F  I  
Sbjct: 250 ALAGWAGSAARSEQILRGAGIDPGARGETLGIEEFRAIAR 289


>gi|89519294|gb|ABD75772.1| hypothetical protein [uncultured bacterium]
          Length = 731

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 15/233 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL + ++ ++I ++     G TV+EIG+G G LT+ L+ L   +++ +E DQ
Sbjct: 25  PKKHLGQHFLTNRSVSRRIVDALRYRPGDTVLEIGSGKGILTEPLMELDI-QLVTVEIDQ 83

Query: 81  QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    L D   + P+ +  +IQDD LKVD ++      P  II N PYNI +++ F  + 
Sbjct: 84  ESIRYLLD---KWPDLKGSLIQDDFLKVDLQRI--CGRPFHIIGNFPYNISSQIFFRILE 138

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +     S+  + QKEV +RI +   S  YG LSVL         +F + P  FFP P
Sbjct: 139 ---YRHLVTSVVCMVQKEVADRIASPPGSKEYGILSVLLRAYFDIESLFSVKPGSFFPPP 195

Query: 200 KVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           +VTS VI         +PC      ++ +  F +RRK +R S+K +    LLH
Sbjct: 196 QVTSGVIRLTRNQTETLPCDEALFFRVVKTLFNQRRKMIRNSIKSI----LLH 244


>gi|218885605|ref|YP_002434926.1| dimethyladenosine transferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756559|gb|ACL07458.1| dimethyladenosine transferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 270

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 128/257 (49%), Gaps = 18/257 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL D NI  KI  +        VIEIG GPG LT+ +   G  ++ ++EKD  
Sbjct: 13  KKSLGQNFLRDRNIAAKIVAALRIGPEDRVIEIGPGPGALTRHIHAAGPAQLFLLEKDYH 72

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +           P  +  +  DAL   +E+  +  S  ++I NLPYN+ + L+++ +S  
Sbjct: 73  WATEHGRTRPAEPPVITPVLTDALLFPWERLTSARS-WKVIGNLPYNVASPLMWDILSTA 131

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P       + QKEVGERI A   S  YG LSV         M F + P VF P PKV
Sbjct: 132 ---PGLARAVFMIQKEVGERIVAAPGSGAYGALSVWLQSFVTPRMEFIVPPQVFVPRPKV 188

Query: 202 TSTVIHFIP------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-RLGGE--NLLHQ 252
            S V+ F+P        +P       L ++ +  F +RRK L++ L+  + G+   LL  
Sbjct: 189 DSAVLSFVPLGAARGRFDP-----ARLSRLLKVCFQQRRKQLQRILRGYVQGDVPALLAG 243

Query: 253 AGIETNLRAENLSIEDF 269
            G++  +R E+L+ EDF
Sbjct: 244 LGLDPAVRPESLAPEDF 260


>gi|300114051|ref|YP_003760626.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113]
 gi|299539988|gb|ADJ28305.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113]
          Length = 264

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 133/255 (52%), Gaps = 9/255 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80
           +K  GQ+FL D  +++++  +     G  ++EIG G G LT  LL  LG  + I +++D 
Sbjct: 9   RKRFGQHFLHDQQVIERLIRAIKPKLGDLMVEIGPGQGALTLPLLHCLGQLEAIELDRDL 68

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             + +++  +S+   RL  +  D+L  DF    + +  +R++ NLPYNI T LLF+ +  
Sbjct: 69  AAY-LIERCASEGNLRLHNV--DSLTFDFRTLAHDNRRLRVVGNLPYNISTPLLFHLLGQ 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  E +  + Q+EV  R+ A+     YGRLSV+  +  +   +F +    F P PK
Sbjct: 126 VG---ILEDMHFMLQREVVTRLAAKPGGKDYGRLSVMVQFYCEVEPLFTVKSGAFVPPPK 182

Query: 201 VTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+   PH   +   +  E+L ++  +AF +RRKTL  +LK L     L   GI+  
Sbjct: 183 VDSMVVRLRPHQPSLAPNISHEALNRVVSQAFSQRRKTLANALKGLLSSAELIALGIDPR 242

Query: 259 LRAENLSIEDFCRIT 273
            R E +S+E +  +T
Sbjct: 243 QRPETVSLEHYLALT 257


>gi|89890027|ref|ZP_01201538.1| dimethyladenosine transferase [Flavobacteria bacterium BBFL7]
 gi|89518300|gb|EAS20956.1| dimethyladenosine transferase [Flavobacteria bacterium BBFL7]
          Length = 280

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 140/265 (52%), Gaps = 18/265 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  KK++GQ+FL D ++ ++IA+   S DG   ++EIG G G LT+ ++     KV  +E
Sbjct: 18  VTAKKHLGQHFLKDEDVAQRIADVL-SYDGYDQILEIGPGTGVLTKHVIRKNM-KVTALE 75

Query: 78  KDQQF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            D +        FP L+ +   +    ++I+ D LK D ++ +   S   II N PYNI 
Sbjct: 76  LDSESVIYLKHSFP-LEHVKIVNDQTFQVIEADFLKKDLKEIYGEQS-FAIIGNFPYNIS 133

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T+++F  I      P +  +   FQKEV +RI A   S  YG LSVL     +A  +F +
Sbjct: 134 TQIVFKTIENREQIPEFGGM---FQKEVAQRICAPHGSKTYGILSVLAQAYYEADYVFTV 190

Query: 191 SPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            P VF P P+V S V+      + + + C    L+++ + AF +RRKTLR SLK L   +
Sbjct: 191 GPEVFDPPPRVDSGVLFLKRRDNYDNLTCSYSILRQVVKLAFQQRRKTLRNSLKTLNLPD 250

Query: 249 LLHQAGIETNLRAENLSIEDFCRIT 273
            + +  I  +LR E +S++ F  + 
Sbjct: 251 EMREKDI-FSLRPEQISVDAFVELA 274


>gi|329894607|ref|ZP_08270413.1| Dimethyladenosine transferase [gamma proteobacterium IMCC3088]
 gi|328922961|gb|EGG30289.1| Dimethyladenosine transferase [gamma proteobacterium IMCC3088]
          Length = 266

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 10/261 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           YK   +K  GQNFL D +++  I  +        ++EIG G G LT  L+    +++  I
Sbjct: 8   YKHKARKRFGQNFLHDTHVITSIVSAIAPAQDDHIVEIGPGQGALTAELVPY-CQRLDAI 66

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+    +L    S H     +   DALK D+ +      P+R++ NLPYNI T L+  
Sbjct: 67  ELDRDLLTLLLASFSIHKG-FHLHNQDALKTDYRELHQ-GRPLRVVGNLPYNISTPLILK 124

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                 +      +  + Q EV +R+TAQ +S  +GRL +   +  +   + D+ P  F 
Sbjct: 125 LFE---YTDIIADMHFMLQSEVVDRLTAQPHSKAWGRLGIAAQYLCRVERIIDVPPEAFD 181

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           P+PKV S V+   P  +     LE L +   + ++AF +RRKTLR +LK +  +  L   
Sbjct: 182 PAPKVQSAVVKLTPK-DSSKIDLEQLGRLQALVKQAFAQRRKTLRNNLKGVVSDAQLEHF 240

Query: 254 GIETNLRAENLSIEDFCRITN 274
           GI+   RAE +S+E +  +++
Sbjct: 241 GIDPAARAETISLEQWVALSD 261


>gi|290968589|ref|ZP_06560127.1| dimethyladenosine transferase [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781242|gb|EFD93832.1| dimethyladenosine transferase [Megasphaera genomosp. type_1 str.
           28L]
          Length = 294

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 133/277 (48%), Gaps = 13/277 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ I+  + +   K +GQNFL+    +  IAE++    G  V+EIG G G LTQ L   G
Sbjct: 12  VRYIVRRFGLHMNKKLGQNFLIRHEAVAAIAEAAALTPGEQVLEIGPGIGTLTQALAETG 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  +E D    PIL    + + N +++I  D ++V          P  + ANLPY I
Sbjct: 72  A-AVRAVEVDAGLLPILAKTLAHYDN-VQVIHGDIMRVSIPDIME-HKPFTVCANLPYYI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   +     P     L  + QKEV +R+ A   S  YG LSV   + T+A ++F+
Sbjct: 129 TTPIIMQLLE-QRLP--IRRLVFMVQKEVAQRMVAAPGSKVYGALSVAVQYYTQAELLFE 185

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRLG-- 245
           I P  F P+P+VTS V+       P     E  +  K+ + AF +RRK  R +L+  G  
Sbjct: 186 IPPQAFMPAPEVTSAVVALQVRTEPPVKVQEEARFFKVVKAAFAQRRKVFRNALQGAGIS 245

Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                 +L +A I+   R E L +++F  +    T  
Sbjct: 246 KETVTRMLREAQIDGERRGETLDLQEFAAVAEAWTKT 282


>gi|94264395|ref|ZP_01288185.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1]
 gi|93455152|gb|EAT05370.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1]
          Length = 304

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 133/278 (47%), Gaps = 24/278 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + ILS +K+ P K  GQNFL+   + ++I E +      TV+E+G G G LT+ L    A
Sbjct: 23  QKILSQHKLAPSKQRGQNFLVQPAVAERIVEVAEIEPTATVVELGVGLGALTRPLAARCA 82

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNI 129
            KVI +E D       +    + P  +E+   D L+ D+          I+IIANLPY+I
Sbjct: 83  -KVIGLELDAGIVNYHRQ-CGELPANVELRHQDLLQADYPAMAAEQGGKIKIIANLPYSI 140

Query: 130 GTRLLFNWI---SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
              LLF  +    A  W      + L+ QKEV +R+ A   S  YG L+ L G       
Sbjct: 141 TNPLLFRLLVQRQALDW------VVLMIQKEVADRLVAAVGSKEYGVLTALLGACATVER 194

Query: 187 MFDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +  + P  FFP PKV S VI       PH+ P       L+++   AF +RRKTL  SL 
Sbjct: 195 LLAVGPGNFFPRPKVDSVVIRLDFRNFPHV-PDDAEFGRLRRVVDAAFNQRRKTLLNSLS 253

Query: 243 ----RLGGENLLHQAG---IETNLRAENLSIEDFCRIT 273
                L  E +        +++ LRAE L+  DF R++
Sbjct: 254 AGLPELDRETIAAALAAAELDSGLRAERLTTADFRRLS 291


>gi|78357102|ref|YP_388551.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|119365022|sp|Q30ZP0|RSMA_DESDG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78219507|gb|ABB38856.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 280

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 126/262 (48%), Gaps = 15/262 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL D NI  KI  +        VIEIG GPG LT  +       + ++EKD  
Sbjct: 21  KKSLGQNFLQDKNISAKIVAALQIGPADCVIEIGPGPGALTDFIQKAAPASLWLLEKDTY 80

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +    +   S+ P   +++  DAL   +E+  +  S  ++I NLPYN+ + L+++ +S  
Sbjct: 81  WAGEHRRSDSRTPVEKQVVLTDALTFPWERLSDDRS-WKLIGNLPYNVASPLMWDCLSLA 139

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +     + QKEVG+RI A   S  YG LSV     T       + P VF P PKV
Sbjct: 140 A----FSRAVFMIQKEVGDRIVAAPRSRQYGALSVWLQSHTVPRKELIVPPTVFKPRPKV 195

Query: 202 TSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAG 254
            S V+ F P      N  P  L  L KI    F +RRK L++ LKR   + +     Q G
Sbjct: 196 DSAVLSFAPLPLSARNFSPGALSVLLKIC---FQQRRKQLQKILKRYWSDAVCGWFEQQG 252

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           +    R E LS   F ++ N+L
Sbjct: 253 LPPAARPEELSPNQFQQLANLL 274


>gi|311897999|dbj|BAJ30407.1| putative dimethyladenosine transferase [Kitasatospora setae
           KM-6054]
          Length = 294

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 136/278 (48%), Gaps = 17/278 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +   + + P K  GQNF++D N +++I  ++G  D   V+E+G G G+LT  LL
Sbjct: 15  AADIRALAEAFGVKPTKQRGQNFVIDGNTVRRIVRAAGVTDEDAVVEVGPGLGSLTLALL 74

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRII 122
            + AR V  +E D      L D +  + P +    +++  DA++V         +P  ++
Sbjct: 75  EV-ARHVTAVEIDPVLARHLPDTVRGRMPAKADSFDLVLSDAMEV---TELPGPAPTALV 130

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +  + +P    +L ++ Q EV +R+ A+  +  YG  SV   W  
Sbjct: 131 ANLPYNVAVPVLLHML--EHFPSIERTL-VMVQSEVADRLAAKPGNKVYGVPSVKANWYA 187

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSL 241
                  I  +VF+P+P V S ++  +    P        +  +   AF +RRKTLR +L
Sbjct: 188 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRDPPATTATRREVFAVVDAAFAQRRKTLRAAL 247

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
               G     E  L  AGI+  LR E L++E F  I  
Sbjct: 248 AGWAGSPAAAEEALRGAGIDHTLRGEMLTVEQFAAIAE 285


>gi|225872206|ref|YP_002753661.1| dimethyladenosine transferase [Acidobacterium capsulatum ATCC
           51196]
 gi|259494240|sp|C1F127|RSMA_ACIC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225792765|gb|ACO32855.1| dimethyladenosine transferase [Acidobacterium capsulatum ATCC
           51196]
          Length = 283

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 136/281 (48%), Gaps = 16/281 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           KS  +  I   +K  PK  +GQNFL+     + I E+ G+L   TV+EIG G G +T++L
Sbjct: 11  KSREVAAISGKHK--PK--LGQNFLVSEAACRSIVEALGNLGARTVVEIGPGKGAITELL 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               A ++I IE D++  P L++  ++    + +I+DD L+VD          + ++ NL
Sbjct: 67  ANR-AERLIAIELDRELAPRLRERFARRET-VTVIEDDVLRVDLSALARPGEKLLVVGNL 124

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + + +L + I  +      E   ++ Q+EV +R+ A   S  YG LSV      +  
Sbjct: 125 PYYMTSEILLHLIRHEA---AIERAVVMVQREVADRVAAGPGSRDYGLLSVTAQLHARVE 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243
            +  + P  F P P+V STV+ +  H       ++  +     +  F ++RKTL  +L+ 
Sbjct: 182 KLLTLPPGAFSPPPEVYSTVLRWTMHSRTDELGVDPTRFTGFLRSCFAQKRKTLGNNLRA 241

Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              E       +  AG+   +RAE LS+E    +   L D 
Sbjct: 242 AKYEPAAIAGAMQSAGVAAGVRAEELSLEALAALWRTLEDR 282


>gi|229495356|ref|ZP_04389091.1| dimethyladenosine transferase [Porphyromonas endodontalis ATCC
           35406]
 gi|229317799|gb|EEN83697.1| dimethyladenosine transferase [Porphyromonas endodontalis ATCC
           35406]
          Length = 294

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 130/260 (50%), Gaps = 8/260 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK +GQ+FL + ++ + IAES  S   I ++EIG G G LT+ LL LG  +V  +E
Sbjct: 32  KVRAKKALGQHFLTNPSVARAIAESVLSWRDIPILEIGPGMGMLTKELLDLGL-EVYALE 90

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIGTRLLF 135
            D +    L+   S       + + D LK+  ++       +P  +I N PYNI +++ F
Sbjct: 91  IDTESVEYLQRNFSWFAQGEHLTEGDVLKLPADELIPGQPQTPFVLIGNYPYNISSQIFF 150

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      P       + QKEV ER+TA      YG LSVL         +F +S   F
Sbjct: 151 RLLELRDRVPCCAG---MLQKEVAERLTAPPGGRDYGILSVLLRCWYHCEYLFTVSELDF 207

Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            P PKV   V+  I +    +P   E  KK+ + AF +RRKTLR SL+ L  E       
Sbjct: 208 DPPPKVKGGVLRLIRNDRKELPVDEELFKKVVKAAFSQRRKTLRNSLRTLFPEGYDFSDP 267

Query: 255 IETNLRAENLSIEDFCRITN 274
           I  +LRAE L +ED+ R+T 
Sbjct: 268 I-FSLRAERLDVEDYIRLTQ 286


>gi|300743832|ref|ZP_07072852.1| dimethyladenosine transferase [Rothia dentocariosa M567]
 gi|300380193|gb|EFJ76756.1| dimethyladenosine transferase [Rothia dentocariosa M567]
          Length = 312

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 137/279 (49%), Gaps = 22/279 (7%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             ++ + +   I P K +GQNF++D N +++I  ++   D  TV+EIG G G+LT + L 
Sbjct: 31  QEIRDLAAQLGIRPTKTLGQNFVIDPNTIRRIVAAADITDDETVLEIGPGLGSLT-LGLA 89

Query: 68  LGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
             AR+V+ +E D    QQ    +          + ++  DALKV         +P  ++A
Sbjct: 90  DAARQVVAVEIDPPLAQQLPHTIAKFRPDKAQNVNVVLMDALKVTELPH----TPDALVA 145

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L +  +   +P    +L ++ Q EV +R+ A+  S  YG  SV   W  +
Sbjct: 146 NLPYNVAVPVLLHLFA--QFPSICHALVMV-QDEVADRLAAKPGSKIYGVPSVKASWYAE 202

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQS 240
                 I  +VF+P+PK+ S ++ F   + P P      + +  +   AF +RRKTLR +
Sbjct: 203 VFKAGVIGKNVFWPAPKINSGLVGF--RMRPQPLADIDRDEVFTVIDAAFAQRRKTLRAA 260

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           L    G     E +L +AGI    R E L I  + RI  
Sbjct: 261 LASWAGSGARAEVILTEAGITPTERGEKLDIHGYIRIAQ 299


>gi|299141585|ref|ZP_07034721.1| dimethyladenosine transferase [Prevotella oris C735]
 gi|298576921|gb|EFI48791.1| dimethyladenosine transferase [Prevotella oris C735]
          Length = 265

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 134/261 (51%), Gaps = 14/261 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL DLNI ++IA++  +   I V+EIG G G LTQ L+T   R+V  +E D++
Sbjct: 7   KKNLGQHFLTDLNIARRIADTVDACPDIPVLEIGPGMGVLTQYLVT-KDREVKAVEIDKE 65

Query: 82  FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               L +    +P  R  II +D L++D  K F    P  +  N PY+I +++ F  +  
Sbjct: 66  SVAFLHE---NYPELRDNIIGEDFLRIDLYKVFE-RRPFVLTGNYPYDISSQIFFKMLDY 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + Q+EV  R+ ++  +  YG LSVL         +F +   VF P PK
Sbjct: 122 KDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYNVEYLFTVDETVFNPPPK 178

Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET-- 257
           V S VI  + + +  + C     K++ +  F +RRK LR S+K++  +     A   T  
Sbjct: 179 VKSAVIRMMRNEVTDLGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEKPASAEFLTLD 238

Query: 258 --NLRAENLSIEDFCRITNIL 276
               R E LS++ F  +TN++
Sbjct: 239 VMTKRPEQLSVQQFVELTNLV 259


>gi|216263454|ref|ZP_03435449.1| dimethyladenosine transferase [Borrelia afzelii ACA-1]
 gi|215980298|gb|EEC21119.1| dimethyladenosine transferase [Borrelia afzelii ACA-1]
          Length = 274

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 148/285 (51%), Gaps = 22/285 (7%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K  L   KI P+K  GQN+L++ NI +KI ES    +   + EIG G G
Sbjct: 1   MNINYNSITSIKQTLKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL      +   E D ++  IL +   +  N  ++I+ D LK    K+ N +  I
Sbjct: 61  AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYPNENKNI 114

Query: 120 -RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
            +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +VL 
Sbjct: 115 DKIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLV 170

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
                   + DI  + F+P+PKV ST +  IP  + I    E   K+ +  F  RRK L+
Sbjct: 171 QSHFTVIKIIDIGENNFYPAPKVKSTTLKLIPKKHNIKDFKE-FNKLIRTVFSSRRKKLK 229

Query: 239 QSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            ++      K +  EN L +     + R EN+S+E+F +I+N LT
Sbjct: 230 NTIINFITNKAILRENFLKEY---LDKRPENISVEEFIQISNTLT 271


>gi|225848984|ref|YP_002729148.1| dimethyladenosine transferase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643260|gb|ACN98310.1| dimethyladenosine transferase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 266

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 133/262 (50%), Gaps = 9/262 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK  GQ+FL   +++KKI +     +  T++EIG G G LT+ +L     K+  +E
Sbjct: 3   KVKAKKQFGQHFLKSQDVVKKIVDEVDIKEDDTILEIGPGTGILTEEILKRNPNKLYSVE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+  +P+L++   ++ N  E+++ D   V+ ++    S  ++++ NLPYN+ + ++ N 
Sbjct: 63  IDKSLYPLLEEKFKEYKN-FELVKSDIFDVNIKE-IAASKKLKVVGNLPYNVASLIMINC 120

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +       F      + QKEV E++ A+  +  Y  LSV          +  +    F P
Sbjct: 121 VFNMEVVDFC---VFMIQKEVAEKLIAKPKTKSYTFLSVFMQTFFDIKYIMSVPARFFSP 177

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            PKVTS V+   P+       ++  K      F  RRK +R  L     +++L +A I+ 
Sbjct: 178 PPKVTSAVVKLTPYNRFGIKDIKKYKNFVSHLFTDRRKMIRSKL----DQSILEKANIKP 233

Query: 258 NLRAENLSIEDFCRITNILTDN 279
            LRAE L++EDF R+  ++ ++
Sbjct: 234 TLRAEELNVEDFVRLFEVVKND 255


>gi|296125514|ref|YP_003632766.1| dimethyladenosine transferase [Brachyspira murdochii DSM 12563]
 gi|296017330|gb|ADG70567.1| dimethyladenosine transferase [Brachyspira murdochii DSM 12563]
          Length = 282

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 20/278 (7%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           L    I P K  GQNFL D NI   IA +       G   +EIG G G L+ ML+ +   
Sbjct: 15  LKEKSIFPNKNRGQNFLCDRNIAYNIAYTVPKSYSRGELALEIGGGLGALSSMLIDIYKE 74

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            + ++E D   +  LK    +  N + II  D L  D     +      +  N+PYNI +
Sbjct: 75  NLTIVEYDNALYNHLK----EKFNNINIIHKDILTFDIS---DSDKQYDVYGNIPYNIAS 127

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++  W+   ++   W     + Q +  ER+TA++N+ +Y  L++   +     + +++S
Sbjct: 128 PIM-EWLLQKSYGK-WNYAVFMVQSDFAERLTAKENTENYSALTLFANFMADVKLEYNVS 185

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ--------SLKR 243
             VF+P PKVTS++I   P    I   ++  K +++  F  RRKT++         ++ +
Sbjct: 186 KEVFYPIPKVTSSIISITPKETDID-MIDIFKSVSKTLFHNRRKTIKNNFINSPYININK 244

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
              + +L ++ IE N+R E L+++   +++NIL +  D
Sbjct: 245 NCIDEILKKSDIEGNVRGETLNLDKVIKLSNILKEYID 282


>gi|221218035|ref|ZP_03589501.1| dimethyladenosine transferase [Borrelia burgdorferi 72a]
 gi|224533530|ref|ZP_03674119.1| dimethyladenosine transferase [Borrelia burgdorferi CA-11.2a]
 gi|225549493|ref|ZP_03770459.1| dimethyladenosine transferase [Borrelia burgdorferi 118a]
 gi|226321214|ref|ZP_03796749.1| dimethyladenosine transferase [Borrelia burgdorferi 29805]
 gi|221191983|gb|EEE18204.1| dimethyladenosine transferase [Borrelia burgdorferi 72a]
 gi|224513203|gb|EEF83565.1| dimethyladenosine transferase [Borrelia burgdorferi CA-11.2a]
 gi|225369770|gb|EEG99217.1| dimethyladenosine transferase [Borrelia burgdorferi 118a]
 gi|226233382|gb|EEH32128.1| dimethyladenosine transferase [Borrelia burgdorferi 29805]
          Length = 281

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 148/286 (51%), Gaps = 24/286 (8%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           ++MN   N   S+K  L   KI P+K  GQN+L++ +I +KI ES    +   + EIG G
Sbjct: 6   LSMNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPG 65

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G +T++LL      +   E D ++  IL +   +  N  ++I+ D LK    K+ N + 
Sbjct: 66  LGAMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYKNENQ 119

Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            I +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +V
Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           L     K   + DI  + F+P+PKV ST +  IP    I    E   K+ +  F  RRK 
Sbjct: 176 LVQSHFKVIKILDIGENNFYPAPKVKSTTLKLIPKKTNIKNFKE-FNKLVRTVFSNRRKK 234

Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L+ ++      K    EN L +     + R EN+S+E+F +I+N L
Sbjct: 235 LKNTIINFITNKATLRENFLKEY---LDKRPENISVEEFIQISNTL 277


>gi|147676415|ref|YP_001210630.1| dimethyladenosine transferase [Pelotomaculum thermopropionicum SI]
 gi|189028813|sp|A5D673|RSMA_PELTS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146272512|dbj|BAF58261.1| dimethyladenosine transferase [Pelotomaculum thermopropionicum SI]
          Length = 295

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 142/289 (49%), Gaps = 27/289 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ I+  + I P+K +GQNFL+DLNI+ KI +++       V+EIG G            
Sbjct: 10  VREIMRRHGISPRKSLGQNFLIDLNIIDKIIKAADLTPADLVVEIGPGL-GALTARAAAR 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK---------FFNISSPIR 120
           A KV+ +E D+   P L ++     N +EII+ DAL VDF++         F       +
Sbjct: 69  AGKVLAVEVDRGLLPALAEVLEGAGN-VEIIRGDALDVDFDRLAGEKTDGAFGRGGKKYK 127

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY + T  L   +  + +   +  + ++ Q EV  R+TA   +  YG LSV   +
Sbjct: 128 LLANLPYYL-TGPLLLRLLLERFN--FALMVVMVQLEVAFRLTASPGTADYGALSVAVQY 184

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKT 236
            T+  ++F +   VF+P P V S V+     L P P       +   ++ + AFG RRKT
Sbjct: 185 FTEPKVLFRVPRTVFYPPPGVDSAVVRL--ALRPAPAVTVRNEDVFFQVVRAAFGFRRKT 242

Query: 237 LRQSLKRLG---GE----NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L  SL   G   G      +L +AGI+   R E LS+ +F  I +   D
Sbjct: 243 LLNSLAASGLGPGREAWLEVLKRAGIDPQRRGETLSLSEFASIADSFLD 291


>gi|224534733|ref|ZP_03675305.1| dimethyladenosine transferase [Borrelia spielmanii A14S]
 gi|224513981|gb|EEF84303.1| dimethyladenosine transferase [Borrelia spielmanii A14S]
          Length = 274

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 20/284 (7%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K  L   KI P+K  GQN+L++ +I +KI ES        + EIG G G
Sbjct: 1   MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKKNEKIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL      +   E D ++  IL +   +  N  ++I+ D  K    +  NI    
Sbjct: 61  AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFFKKYPTENKNID--- 115

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + + L  QKE+ +RITA+ NS +Y   +VL  
Sbjct: 116 KIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKINSKNYSSFTVLVQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI  + F+P+PKV ST +  IP  N I    E   K+ +  F  RRK L+ 
Sbjct: 172 SHFTVIKIIDIGENNFYPAPKVKSTTLKLIPKKNNIKDFKE-FNKLIRTVFSNRRKKLKN 230

Query: 240 SL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           ++      K +  EN L +    ++ R EN+SIE+F +I+N LT
Sbjct: 231 TIINFIANKTILKENFLKEY---SDKRPENISIEEFIQISNTLT 271


>gi|195440550|ref|XP_002068104.1| GK10486 [Drosophila willistoni]
 gi|194164189|gb|EDW79090.1| GK10486 [Drosophila willistoni]
          Length = 334

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 150/291 (51%), Gaps = 23/291 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLT 67
           +++ ++  YK+   K + QNFL+D  +  KI +S+G++D    V+E+G GPG +T+ +L 
Sbjct: 20  TIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGTIDRRDIVLEVGPGPGGITRSILR 79

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIA 123
              +++I++EKD +F     +LK+ +     +++I  +D L+ + ++   + +  + +I 
Sbjct: 80  RQPQRLILVEKDPRFRETLDLLKECARPLDIQVDIYHEDILRFNMDQHISDTTQRLHLIG 139

Query: 124 NLPYNIGTRLLFNWIS--ADTWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           NLP+ I TRLL NW +  ++    F      +TL FQKEV ERI A   S    RLS+++
Sbjct: 140 NLPFAISTRLLINWYADLSNRRGAFRRQDTCMTLTFQKEVAERICAPLGSEQRCRLSIMS 199

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRK 235
              T   + F I    F P P+V   V+  IP   P   +P   + ++++ +  F  R+K
Sbjct: 200 QIWTDPKLKFIIPGKAFVPKPQVDVGVVKLIPLKRPKTQLP--FDLVERVMRHIFSMRQK 257

Query: 236 TLRQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             R+         L+      L  +A +   +R   LS+++  R+  +  +
Sbjct: 258 YCRRGFSNLLPPELREEQTPELFRRADVVDTMRPFELSVDECVRLAEVYAE 308


>gi|212702270|ref|ZP_03310398.1| hypothetical protein DESPIG_00281 [Desulfovibrio piger ATCC 29098]
 gi|212674333|gb|EEB34816.1| hypothetical protein DESPIG_00281 [Desulfovibrio piger ATCC 29098]
          Length = 272

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 131/266 (49%), Gaps = 15/266 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL   +I  +IA      D   VIEIG GPG LT+ +      +++++EKD  
Sbjct: 10  KKSLGQHFLRHESICNRIASLLLPKDTDNVIEIGPGPGALTRAIEAQPHARLVLLEKDSH 69

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +    + + S    R + +  DAL+ D+ +     +P +II NLPYN+ + ++++  S  
Sbjct: 70  WAAERQRLGSA---RTQAVLTDALRFDWSRI-TPDNPWKIIGNLPYNVASPMMWDLFSRA 125

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           T          + QKEVG+R+ A   + HYG LSV      +  M F + P  F P PKV
Sbjct: 126 T---GLVRAAFMVQKEVGQRLAAGPGNGHYGALSVWVQSFARPCMEFIVGPGAFSPPPKV 182

Query: 202 TSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAGIE 256
            S V+ F P  L+  P   + L  + +  F +RRK L    +R      L     QAGI 
Sbjct: 183 DSAVLSFEPLPLDQRPDRPDLLALVIKVCFQQRRKQLGSIARRCPLAPWLSAAIEQAGIT 242

Query: 257 TNLRAENLSIEDFCRITNI---LTDN 279
             LR E L++ DF  I+     L DN
Sbjct: 243 PTLRPEQLTVADFQHISRFGASLLDN 268


>gi|324998153|ref|ZP_08119265.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudonocardia sp. P1]
          Length = 292

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 133/279 (47%), Gaps = 19/279 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D N +++I +S+G      V+E+G G G+LT  LL + 
Sbjct: 15  VRVLADRLGLRPTKKLGQNFVHDANTVRRIVKSAGVGADDVVLEVGPGLGSLTLALLPVA 74

Query: 70  ARKVIVIEKDQQFFPILKD-ISSQHP---NRLEIIQDDALKVDFEKFF------NISSPI 119
           AR V VIE D     +L + ++ + P   +RL +   DA++V   +          + P 
Sbjct: 75  AR-VHVIEIDPVLAELLPETVAERAPGLADRLTVTGADAMRVSAAELAADAGGARPADPT 133

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            I+ANLPYN+   ++ + ++     P  E   ++ Q EV +R+ A   S  YG  S    
Sbjct: 134 AIVANLPYNVAVPVILHLLAEL---PSLERGLVMVQAEVADRLAAGPGSRQYGAPSAKLA 190

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           W   A     +   VF+P P V S ++ F  H  P      +   + + AF +RRK LR 
Sbjct: 191 WYADARRAGPVPRAVFWPVPGVDSGLLAFTRHDPPSGADRAATFAVIEAAFAQRRKALRG 250

Query: 240 SLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           +L    G        L  AGI+   RAE LS+ DF  + 
Sbjct: 251 ALAGWAGSPAAAETALRAAGIDPTTRAERLSVTDFAAVA 289


>gi|38233472|ref|NP_939239.1| dimethyladenosine transferase [Corynebacterium diphtheriae NCTC
           13129]
 gi|62900542|sp|Q6NIA2|RSMA_CORDI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|38199732|emb|CAE49392.1| Putative dimethyladenosine transferase [Corynebacterium
           diphtheriae]
          Length = 295

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 136/281 (48%), Gaps = 22/281 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D N ++ I  ++       VIE+G G G+LT  LL   
Sbjct: 15  IRQLAEKLDVTPTKKLGQNFVHDPNTVRMIVSAADLNSDDHVIEVGPGLGSLTLALLDT- 73

Query: 70  ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A+KV  +E D    QQ    + + + Q  +RL +I  DAL V  +   +I  P  ++ANL
Sbjct: 74  AQKVTAVEIDPRLAQQLPLTVAERAGQFADRLNLIHKDALTVAPD---DIDHPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +    +P     L ++ Q EV +R+ A   +  YG  SV   +     
Sbjct: 131 PYNVSVPVLLHLLQ--IFPTIRRVLVMV-QAEVADRLAADPGNKVYGVPSVKASFYGNVR 187

Query: 186 MMFDISPHVFFPSPKVTSTVIH---FIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQ 239
               I  +VF+P+PK+ S ++    F P   P P   +  K +      AF +RRKTLR 
Sbjct: 188 RAGSIGKNVFWPAPKIESGLVRIDVFDPEHQPWPVTDDMRKAVFPLIDSAFAQRRKTLRA 247

Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           +L    G     E  L  AGI+  LR E L I DF R+  +
Sbjct: 248 ALSGHFGSGPAAEEALRTAGIDPILRGEKLDIADFVRLARV 288


>gi|146329356|ref|YP_001209814.1| rRNA adenine dimethylase [Dichelobacter nodosus VCS1703A]
 gi|226730735|sp|A5EY68|RSMA_DICNV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146232826|gb|ABQ13804.1| rRNA adenine dimethylase [Dichelobacter nodosus VCS1703A]
          Length = 263

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 11/257 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ+FL D  I+ ++  +        ++EIG G G LT  +L     ++  +E D + 
Sbjct: 8   KRLGQHFLRDEGIITQLLAAIDPKPQQKILEIGPGLGALTLPVLE-RCHELYAVELDHRV 66

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              L + ++     L +I+ D L + F +     +PIRII NLPYN+ + +LF+ ++  +
Sbjct: 67  LQPLSEKAAAV-GILHLIERDILNIHFAEV--APAPIRIIGNLPYNLSSPILFHCVAQRS 123

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                  +  + QKEV +RITA  ++P YGRLSV+     +   +FD+ P  F P PKV 
Sbjct: 124 D---IVDMHFMLQKEVVDRITAPVDTPAYGRLSVMIQLYCQVEALFDVPPEAFAPPPKVN 180

Query: 203 STVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           S V+  IP    +   +ES+     + + AF +RRK LR+SL        L    ++   
Sbjct: 181 SAVVRLIPQTQ-LTWNIESIAHFECVVRSAFSQRRKMLRKSLAAYFEPKELMALDVDPTA 239

Query: 260 RAENLSIEDFCRITNIL 276
           RAE +    F R+ N L
Sbjct: 240 RAETIDGASFARLANAL 256


>gi|15639328|ref|NP_218777.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025570|ref|YP_001933342.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum
           SS14]
 gi|27151559|sp|O83357|RSMA_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732635|sp|B2S2T4|RSMA_TREPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|3322613|gb|AAC65323.1| dimethyladenosine transferase (ksgA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018145|gb|ACD70763.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059727|gb|ADD72462.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 285

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 21/284 (7%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N + +L   L+   +   K  GQNFLLD  +  ++ +      G  V EIGAG G +T +
Sbjct: 7   NSARALAQFLTERGLRMHKKWGQNFLLDPVLRTQLVKILAPERGERVWEIGAGIGAMTAL 66

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           L+   +  + V E D+ F   L+ +   H   + +I+ D L+  +        P  ++ N
Sbjct: 67  LVQ-NSDFLTVFEIDRGFVQTLRKLFDAH---VRVIEGDVLQ-QWHAAAAQEQPACVLGN 121

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI  R + N I +      ++ + +  QKE+G R+TA      Y   SVL  W+ + 
Sbjct: 122 LPYNIAARFIGNTIESGY---IFKRMVVTVQKEIGLRMTALPAQKWYSYFSVLCQWQYEV 178

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL- 241
            ++ +++P  F+P P V S  +  +   N +P C++      +T+  F  RRKT+R +L 
Sbjct: 179 RVIRNVAPVCFWPRPHVVSQAL-VLTKRNAVPSCVDPALFLHVTKTLFSARRKTVRNNLL 237

Query: 242 ---KRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              KR+ G      E L  +AGI+   RAE LSI DF  +++ L
Sbjct: 238 TWQKRMPGGAAVCVEELCARAGIDARARAEQLSIYDFITLSDTL 281


>gi|292492136|ref|YP_003527575.1| dimethyladenosine transferase [Nitrosococcus halophilus Nc4]
 gi|291580731|gb|ADE15188.1| dimethyladenosine transferase [Nitrosococcus halophilus Nc4]
          Length = 265

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 14/258 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQ+FL D  ++ ++        G  ++EIG G G LT  LL  LG  + I +++D 
Sbjct: 9   RKRFGQHFLHDKQVIDRLHRVINPQPGELMVEIGPGQGALTLPLLRRLGHLEAIELDRDL 68

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWIS 139
             + ++++ +S+    L +   DAL  DF       +  +R++ NLPYN+ T LLF+ ++
Sbjct: 69  AAY-LVENCASE--GDLHLHNVDALTFDFRTLAREQNQRLRVVGNLPYNVSTPLLFHLLA 125

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                   E +  + Q+EV  R+ A+     YGRLSV+  +      +F + P  F P P
Sbjct: 126 QVE---VLEDMHFMLQREVVVRLAAKPGGKDYGRLSVMVQFYCGVEPLFTVKPGAFMPPP 182

Query: 200 KVTSTVIHFIPH---LNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           KV S V+   PH   L P IP    +L ++  +AF +RRKTL  +LK L G   L   GI
Sbjct: 183 KVDSMVVRLKPHRPSLAPEIPHA--ALNRVVSQAFSQRRKTLANALKGLLGSADLKVLGI 240

Query: 256 ETNLRAENLSIEDFCRIT 273
           +   R E + +E +  +T
Sbjct: 241 DPRQRPETVDLEQYLALT 258


>gi|134296900|ref|YP_001120635.1| dimethyladenosine transferase [Burkholderia vietnamiensis G4]
 gi|166221657|sp|A4JHP7|RSMA_BURVG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|134140057|gb|ABO55800.1| dimethyladenosine transferase [Burkholderia vietnamiensis G4]
          Length = 276

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 31/284 (10%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL+D  ++  I  + G + G  ++EIG G G LT+ L+     +V  
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVATIGPVRGQRMVEIGPGLGALTEPLIA----RVAT 62

Query: 76  IEKDQQFFPILKDISSQHPNR----LEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126
            E       + +D+  +   R    LE+   DAL  DF    ++++P     +RI+ NLP
Sbjct: 63  PESPLHAVELDRDLIGRLQQRFGALLELHAGDALAFDFG---SLAAPGHAPSLRIVGNLP 119

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI + LLF+ +   T+ P       + Q EV ER+ A+  +  + RLSV+  +R     
Sbjct: 120 YNISSPLLFHLM---TFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           M D+ P  F P PKV S ++  IP+       ++P+      L ++   AF +RRK LR 
Sbjct: 177 MLDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPV-----LLGELVTAAFSQRRKMLRN 231

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           +L            G +   RAE++S+ ++  +   L   +++A
Sbjct: 232 TLGAYRDTIDFDALGFDLARRAEDVSVAEYVGVAQALARTRNVA 275


>gi|111115418|ref|YP_710036.1| dimethyladenosine transferase [Borrelia afzelii PKo]
 gi|123145677|sp|Q0SMR8|RSMA_BORAP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|110890692|gb|ABH01860.1| dimethyladenosine transferase [Borrelia afzelii PKo]
          Length = 281

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 149/287 (51%), Gaps = 24/287 (8%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           ++MN   N   S+K  L   KI P+K  GQN+L++ NI +KI ES    +   + EIG G
Sbjct: 6   LSMNINYNSITSIKQTLKEKKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPG 65

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G +T +LL      +   E D ++  IL +   +  N  ++I+ D LK    K+ N + 
Sbjct: 66  LGAMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLK----KYPNENK 119

Query: 118 PI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            I +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +V
Sbjct: 120 NIDKIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           L         + DI  + F+P+PKV ST +  IP  + I    E   K+ +  F  RRK 
Sbjct: 176 LVQSHFTVIKIIDIGGNNFYPAPKVKSTTLKLIPKKHNIKDFKE-FNKLIRTVFSSRRKK 234

Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L+ ++      K +  EN L +     + R EN+S+E+F +I+N LT
Sbjct: 235 LKNTIINFITNKAILRENFLKEY---LDKRPENISVEEFIQISNTLT 278


>gi|170691411|ref|ZP_02882576.1| dimethyladenosine transferase [Burkholderia graminis C4D1M]
 gi|170143616|gb|EDT11779.1| dimethyladenosine transferase [Burkholderia graminis C4D1M]
          Length = 276

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 19/272 (6%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H   I +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L   L      
Sbjct: 11  HQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 70

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+     LK+   +    LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 71  LHAVELDRDLIGRLKN---KFGELLELHAGDALAFDFG---SLAAPGDAPSLRIVGNLPY 124

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R      
Sbjct: 125 NISSPLLFHLVS---FAPRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQ 181

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P PKV S ++  IP+      P     L ++   AF +RRK LR +L    
Sbjct: 182 LDVPPEAFQPPPKVDSAIVRMIPYAPHELTPVDERVLGEVVTAAFSQRRKMLRNTLAAFR 241

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                   G +   RAE++ + ++ R+  I+ 
Sbjct: 242 DRVDFEAIGFDLQRRAEDVPVAEYVRVAQIVA 273


>gi|311113076|ref|YP_003984298.1| dimethyladenosine transferase [Rothia dentocariosa ATCC 17931]
 gi|310944570|gb|ADP40864.1| dimethyladenosine transferase [Rothia dentocariosa ATCC 17931]
          Length = 312

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 136/279 (48%), Gaps = 22/279 (7%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             ++ + +   I P K +GQNF++D N +++I  ++   D  TV+EIG G G+LT + L 
Sbjct: 31  QEIRDLAAQLGIRPTKTLGQNFVIDPNTIRRIVTAADITDDETVLEIGPGLGSLT-LGLA 89

Query: 68  LGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
             AR V+ +E D    QQ    +          + ++  DALKV         +P  ++A
Sbjct: 90  DAARHVVAVEIDPPLAQQLPHTIAKFRPDKAQNVNVVLMDALKVTELPH----TPDALVA 145

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L +  +   +P    +L ++ Q EV +R+ A+  S  YG  SV   W  +
Sbjct: 146 NLPYNVAVPVLLHLFA--QFPSICHALVMV-QDEVADRLAAKPGSKIYGVPSVKASWYAE 202

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTLRQS 240
                 I  +VF+P+PK+ S ++ F   + P P      + +  +   AF +RRKTLR +
Sbjct: 203 VFKAGVIGKNVFWPAPKINSGLVGF--SMRPQPLADIDRDEVFTVIDAAFAQRRKTLRAA 260

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           L    G     E +L +AGI    R E L I  + RI  
Sbjct: 261 LASWAGSGARAEAILTEAGITPTERGEKLDIHGYIRIAQ 299


>gi|222100031|ref|YP_002534599.1| Dimethyladenosine transferase [Thermotoga neapolitana DSM 4359]
 gi|254808100|sp|B9K8F0|RSMA_THENN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|221572421|gb|ACM23233.1| Dimethyladenosine transferase [Thermotoga neapolitana DSM 4359]
          Length = 260

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 132/265 (49%), Gaps = 24/265 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  Y I  KK++GQ FL D  I K+I + +       V+EIGAG G LT+ L   GAR V
Sbjct: 7   LKKYGIRLKKHLGQVFLSDDRIAKRIVKEADLKPDDVVVEIGAGAGTLTEELAKTGAR-V 65

Query: 74  IVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           I  E D+   PIL++  S++PN   R E         DF K  ++      ++N+PY++ 
Sbjct: 66  IAYEIDEGLAPILQERLSKYPNVELRFE---------DFLKARDVPEEAICVSNIPYSVT 116

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
             ++   I    W   ++   ++ QKEVGERI ++     YG LSV+     +   +FD+
Sbjct: 117 GPIMEKIIE---WR--FKKAIVMVQKEVGERILSKPGRKSYGYLSVVVQTFYEVRKLFDV 171

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           S   F P+P+V S V+        +       KK     F K+RKTL+ +L+      L 
Sbjct: 172 SRSYFVPNPEVDSVVVEM--KRKAVEIDFPQFKKFVSMIFSKKRKTLKNNLRPF----LS 225

Query: 251 HQAGIETNLRAENLSIEDFCRITNI 275
              G++ + RAE LSIE+   + NI
Sbjct: 226 VFEGVDLSRRAEQLSIEEIIELYNI 250


>gi|54026877|ref|YP_121119.1| dimethyladenosine transferase [Nocardia farcinica IFM 10152]
 gi|62900491|sp|Q5YPY6|RSMA_NOCFA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|54018385|dbj|BAD59755.1| putative ribosomal RNA small subunit dimethyltransferase [Nocardia
           farcinica IFM 10152]
          Length = 293

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 139/282 (49%), Gaps = 29/282 (10%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +   + + P K +GQNF+ D N +++I  ++G     TV+E+G G G+LT  LL + 
Sbjct: 20  VRALAERFGVRPTKQLGQNFVHDANTVRRIVTAAGVGRADTVLEVGPGLGSLTLALLDV- 78

Query: 70  ARKVIVIEKDQQFFPILKD-----ISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRI 121
              V+ +E D    P+L +     ++ + P    RL +++DDAL+V        +SP  +
Sbjct: 79  VDSVVAVEID----PVLAEHLPRTVADRAPALAGRLRVVRDDALRVRAADL--PASPTAL 132

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   +L + ++     P   +  ++ Q EV +R+ A+  S  YG  SV  G+ 
Sbjct: 133 VANLPYNVAVPVLLHLLAEL---PGLRTALVMVQAEVADRLAAEPGSRVYGVPSVKAGFF 189

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK-----ITQEAFGKRRKT 236
                   +   VF+P P+V S ++    ++ P P  ++   +     I   AF +RRKT
Sbjct: 190 GTVRRAGAVGTQVFWPVPRVESGLVRVERYVEP-PWPMDEQHRRRVFEIIDAAFAQRRKT 248

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           LR +L    G     E  L  AGI+   R E L    + R+ 
Sbjct: 249 LRAALAGWAGSPAEAERRLLAAGIDPTARGETLDTAAYVRLA 290


>gi|121606957|ref|YP_984286.1| dimethyladenosine transferase [Polaromonas naphthalenivorans CJ2]
 gi|166221686|sp|A1VUN7|RSMA_POLNA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120595926|gb|ABM39365.1| dimethyladenosine transferase [Polaromonas naphthalenivorans CJ2]
          Length = 279

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 34/277 (12%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K I +K  GQ+FL D  I++ I E+   L G  ++EIG G   +T+ L+  LG   VI +
Sbjct: 2   KHIARKRFGQHFLTDRLIIEGIVEAIAPLPGQPMVEIGPGLAAMTRPLVERLGHLTVIEL 61

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------------NISSP--IR 120
           ++D     + + + S    +L +I+ D L+VDF +                   SP  +R
Sbjct: 62  DRD-----LARQLRSN--PQLTVIESDVLRVDFLQLAEQVQSAGALRGAASQTPSPCKLR 114

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ NLPYNI T +LF+ + A       E    + QKEV +R+ A  ++  YGRLSV+  W
Sbjct: 115 VVGNLPYNISTPILFHLLDAVE---VIEDQHFMLQKEVIDRMVAMPSTSDYGRLSVMLQW 171

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R     +  + P  F P P+V S ++  +PH  P    ++ L ++ + AF +RRK LR +
Sbjct: 172 RYAMENVLYVPPQSFDPPPRVDSAIVRMVPHAEPARLDVKLLSELVRVAFSQRRKLLRHT 231

Query: 241 LKRLGGENLLHQA---GIETNLRAENLSIEDFCRITN 274
           L    G+ L   A     +   RAE + + ++  +  
Sbjct: 232 L----GQWLEQHAFSGEFDVKRRAEEVPVAEYLALAQ 264


>gi|302336213|ref|YP_003801420.1| dimethyladenosine transferase [Olsenella uli DSM 7084]
 gi|301320053|gb|ADK68540.1| dimethyladenosine transferase [Olsenella uli DSM 7084]
          Length = 347

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 135/298 (45%), Gaps = 39/298 (13%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQML 65
            + K++L  + +  K  +GQNFL+   ++ +I   +  G+ D   V+E+G G G LT  +
Sbjct: 39  RATKSVLDGFGLCTKHRLGQNFLVSDAVIGRILGLAELGTSD--VVLEVGPGIGTLTVAM 96

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------FNI---- 115
           L L A  V  +E D+   P+L    ++   R  ++  DAL VD            I    
Sbjct: 97  LPL-AGAVCSVEADRSLAPVLAHTCARDSERFSLVLGDALDVDGASLSAELASLGIDGLP 155

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +SP ++++NLPY +   ++          P      ++ Q EV +R++A+  S  YG  +
Sbjct: 156 ASPNKLVSNLPYQVAATIVLKAFQ---EMPSIRRAVVMVQSEVADRMSARPGSRAYGGYT 212

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLK 223
              G     T  F++ P  F P+P V S V+     ++ +P C            L S  
Sbjct: 213 AKLGLYGTVTGRFEVGPGNFMPAPHVDSAVV----RIDRVPACDPQTAEPLDTGRLASCV 268

Query: 224 KITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276
                AF +RRKT+R S+   G E       L +A IE  +RAE LS  DF R+   L
Sbjct: 269 VAIDAAFAQRRKTIRNSMAASGFERDALDVALAEASIEPTVRAEALSTADFVRLDAAL 326


>gi|54020652|ref|YP_116181.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 232]
 gi|62900495|sp|Q5ZZN4|RSMA_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|53987825|gb|AAV28026.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 232]
          Length = 259

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 134/267 (50%), Gaps = 17/267 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +PKK +GQNFL D  I +KI E+   L    +IEIG G G LT  LL   A+ V   E
Sbjct: 3   KPVPKKRLGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-KAKFVTCYE 60

Query: 78  KDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D+   PIL     +  N+ L II +D L  +FE          IIANLPY I +++LF 
Sbjct: 61  IDKNLIPIL---EKKFKNKNLRIINEDFLLAEFES----KEKKTIIANLPYYITSKILFK 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I A+     ++ + L+ Q EV +RI A+  +P Y +LS+ + +  K   +F + P  FF
Sbjct: 114 -IFANFEK--FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAKVRKLFVVGPDSFF 170

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQ 252
           P PKV S V+ F    N     +E+    T+  F  +RKTL  +    L +   E + + 
Sbjct: 171 PKPKVNSAVVSFDFRANLDAKEMENFFWFTKRCFQFKRKTLYNNLIFFLNKQQIEKIYNF 230

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
                N+R + L +  + R+ +   +N
Sbjct: 231 FQFAQNIRPQQLDLVTYIRLADFYFNN 257


>gi|311740851|ref|ZP_07714678.1| dimethyladenosine transferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304371|gb|EFQ80447.1| dimethyladenosine transferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 300

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 140/279 (50%), Gaps = 20/279 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     I+P K +GQNFL D N +++I  ++       V+E+G G G+LT + L   
Sbjct: 29  IRALAEKLDIVPTKKLGQNFLHDPNTIRRIVAAAELEPTDRVLEVGPGMGSLT-LGLVEA 87

Query: 70  ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              V  +E D +    L D     + ++  RL +++ DAL+V      +++ P  ++ANL
Sbjct: 88  VGDVTAVEIDSRLAAQLPDTVAERAPEYAQRLRVVEKDALRVTDS---DVTEPTALVANL 144

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  +T+P     L ++ Q EV +R+ AQ  S  YG  SV  G+  K +
Sbjct: 145 PYNVAVPVLLHLL--ETFPSIRRVLVMV-QLEVADRLAAQPGSKVYGVPSVKAGFYGKVS 201

Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSL 241
               I  +VF+P+P + S ++   +    P P   ES  K   +   AF +RRKTLR +L
Sbjct: 202 KAGTIGKNVFWPAPNIESGLVRIDVFEDAPWPITDESRAKVWPVIDAAFAQRRKTLRAAL 261

Query: 242 KRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNI 275
               G        L  A I+   R E L++EDF R+  I
Sbjct: 262 SGHFGSGAAAEEALRAADIDPKQRGEKLAVEDFVRLAGI 300


>gi|281425444|ref|ZP_06256357.1| dimethyladenosine transferase [Prevotella oris F0302]
 gi|281400437|gb|EFB31268.1| dimethyladenosine transferase [Prevotella oris F0302]
          Length = 265

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 134/261 (51%), Gaps = 14/261 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL DLNI ++IA++  +   I V+EIG G G LTQ L+T   R+V  +E D++
Sbjct: 7   KKNLGQHFLTDLNIARRIADTVDACPDIPVLEIGPGMGVLTQYLVT-KDREVKAVEIDKE 65

Query: 82  FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               L +    +P  R  II +D L++D  K F    P  +  N PY+I +++ F  +  
Sbjct: 66  SVAFLHE---NYPELRDNIIGEDFLRMDLCKVFE-RRPFVLTGNYPYDISSQIFFKMLDY 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     T + Q+EV  R+ ++  +  YG LSVL         +F +   VF P PK
Sbjct: 122 KDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYNVEYLFTVDETVFNPPPK 178

Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET-- 257
           V S VI  + + +  + C     K++ +  F +RRK LR S+K++  +     A   T  
Sbjct: 179 VKSAVIRMMRNEVTDLGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEKPASAEFLTLD 238

Query: 258 --NLRAENLSIEDFCRITNIL 276
               R E LS++ F  +TN++
Sbjct: 239 VMTKRPEQLSVQQFVELTNLV 259


>gi|261880118|ref|ZP_06006545.1| dimethyladenosine transferase [Prevotella bergensis DSM 17361]
 gi|270333202|gb|EFA43988.1| dimethyladenosine transferase [Prevotella bergensis DSM 17361]
          Length = 269

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 134/271 (49%), Gaps = 26/271 (9%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+ PKK +GQ+FL DLNI K+IA++      I V+EIG G G LTQ L+    R+V  +E
Sbjct: 5   KVKPKKNLGQHFLTDLNIAKRIADTVDVCPEIPVLEIGPGMGVLTQYLVE-KPREVKAVE 63

Query: 78  KDQ-------QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            D        + FP L+D          II  D L+++  + F    P  +  N PY+I 
Sbjct: 64  IDSESVTYLNEHFPKLRD---------NIIAADFLRMNLNEVFG-GRPFVLTGNYPYDIS 113

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           +++ F  +      P     T + Q+EV  R+ +   +  YG LSVL         +F +
Sbjct: 114 SQIFFKMLDYKDLIP---CCTGMIQREVALRMASAPGNKAYGILSVLIQAWYDVEYLFTV 170

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENL 249
           S  VF P PKV S VI    +      C E+L K++ +  F +RRK LR SLK+L  +  
Sbjct: 171 SEGVFNPPPKVKSAVIRMTRNAVVELGCDEALFKRVVKATFNQRRKMLRVSLKQLFSKET 230

Query: 250 LHQAGIETN----LRAENLSIEDFCRITNIL 276
           +      T+    +R E L I+ F  +TN++
Sbjct: 231 MPAPVFFTHEMMTMRPEQLCIQQFVELTNMV 261


>gi|145219843|ref|YP_001130552.1| dimethyladenosine transferase [Prosthecochloris vibrioformis DSM
           265]
 gi|145206007|gb|ABP37050.1| dimethyladenosine transferase [Chlorobium phaeovibrioides DSM 265]
          Length = 270

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 135/255 (52%), Gaps = 13/255 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H +I  KK +GQNFL D NI +KI  +SG+L    ++EIG G G LT+ +  L       
Sbjct: 7   HTEIAVKKKLGQNFLTDSNITRKIVAASGALPTERILEIGPGFGALTKEISALTPH-FTA 65

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +EKD+        I  ++P+ L++I+ D L +D E+  +   P+R++ N+PY+I T ++F
Sbjct: 66  VEKDRALAAF---IRREYPS-LQMIEADFLDLDLEE-LSTDGPLRVLGNIPYSITTPIIF 120

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             + A        S TL+ Q EV  R+TA+ ++  YG L+V          +F +   VF
Sbjct: 121 KLLEARHN---ILSATLMMQHEVALRLTAKPSTKEYGILAVQLQSFCTVRYLFKVGRKVF 177

Query: 196 FPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            P P V S VI   P   +P+   L + ++  + AF +RRKTL  +L+     +L     
Sbjct: 178 KPQPNVDSAVISMTPKKESPVENPL-AYRQFVRTAFHQRRKTLLNNLR--DSYDLSSLTP 234

Query: 255 IETNLRAENLSIEDF 269
               LRAE LSIE+F
Sbjct: 235 ETLKLRAEALSIEEF 249


>gi|296161013|ref|ZP_06843824.1| dimethyladenosine transferase [Burkholderia sp. Ch1-1]
 gi|295888712|gb|EFG68519.1| dimethyladenosine transferase [Burkholderia sp. Ch1-1]
          Length = 277

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 25/278 (8%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H   I +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L   L      
Sbjct: 11  HQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 70

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+     LK   ++  + LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 71  LHAVELDRDLIGRLK---TKFGDLLELHAGDALAFDFG---SLAAPGDKASLRIVGNLPY 124

Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           NI + LLF+  +      F   +     + Q EV ER+ A+  +  + RLSV+  +R   
Sbjct: 125 NISSPLLFHLTA------FAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVI 178

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLK 242
               D+ P  F P PKV S ++  IP+ L+ +P   E  L ++   AF +RRK LR +L 
Sbjct: 179 DKQLDVPPEAFNPPPKVDSAIVRMIPYELHELPAVDERVLGELVTAAFSQRRKMLRNTLA 238

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                      G +   RAE++ + ++ R+  I+  N+
Sbjct: 239 AYRDSVDFEGLGFDLQRRAEDVPVSEYVRVAQIVAANK 276


>gi|262164104|ref|ZP_06031843.1| dimethyladenosine transferase [Vibrio mimicus VM223]
 gi|262027632|gb|EEY46298.1| dimethyladenosine transferase [Vibrio mimicus VM223]
          Length = 232

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 120/231 (51%), Gaps = 13/231 (5%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKV 107
           ++EIG G G +T+ +      K  VIE D+     L++    HP   ++L I + DA++ 
Sbjct: 1   MVEIGPGLGAITEPV-GREVDKFTVIELDRDLAERLRN----HPELASKLTIHEGDAMRF 55

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           DF++    ++ +R+  NLPYNI T L+F+           + +  + QKEV  R+ A   
Sbjct: 56  DFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHR---DIQDMHFMLQKEVVNRLAAGPG 112

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKI 225
           S  YGRL+V+  +  K   + ++ P  F P PKV S V+  +P+ + P P   LE L ++
Sbjct: 113 SKAYGRLTVMAQYYCKVVPVLEVPPTAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRV 172

Query: 226 TQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            +E F +RRKT+R   K L     L   GI   +R ENL++  F  + N L
Sbjct: 173 VREGFNQRRKTVRNCYKGLVEPETLEALGINPGMRPENLTLAQFVALANWL 223


>gi|300172804|ref|YP_003771969.1| dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887182|emb|CBL91150.1| Dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811]
          Length = 295

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 148/282 (52%), Gaps = 28/282 (9%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL+ Y +  KK  GQNFL DL++L  I +++   +   VIEIG G G+LT+ +    A
Sbjct: 14  QAILNAYGLHAKKKFGQNFLTDLDVLHGIVDTADITNEDYVIEIGPGIGSLTEQI-ARAA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLP 126
           +KV+  E D Q   +L +    + N +++I  D L+++  +     F  ++ ++++ANLP
Sbjct: 73  KKVLAFEIDTQMVKVLGETLKDYDN-VKVISGDILEMNLPQIITEEFGETAHVKVVANLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +L   +  +     W+++ ++ Q+EV +R+ A+  +  YG L++   +   A +
Sbjct: 132 YYITTPILMQLLRTNIT---WDNIVVMMQREVADRLNAEVGTKAYGVLTLTVQYFANAQL 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLK 242
             ++    F P+PKV S V+   P    +P  +    E L  + + +F  RRK+L  ++ 
Sbjct: 189 AIEVPATAFNPAPKVESAVVKLTPL---VPQVIVDQPERLFGVIKGSFSHRRKSLWNNML 245

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNI 275
           +  G++          L QA I+ ++RAE L   D  ++T +
Sbjct: 246 QTYGKDTYIKEKITAALKQATIDPSIRAERL---DLTQLTTL 284


>gi|299531916|ref|ZP_07045316.1| dimethyladenosine transferase [Comamonas testosteroni S44]
 gi|298720091|gb|EFI61048.1| dimethyladenosine transferase [Comamonas testosteroni S44]
          Length = 253

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 132/269 (49%), Gaps = 26/269 (9%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQNFL D  I+  I ++     G  ++EIG G   L+Q L+  LG   VI +
Sbjct: 2   KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLGKLTVIEL 61

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
           ++D      L+D        L++++ D LKVDF         + +R++ NLPYNI + +L
Sbjct: 62  DRDLAARLRLRD-------DLDVVESDVLKVDFRALAARLGVTKLRVVGNLPYNISSPIL 114

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +         +    + QKEV +R+ A   +  YGRLSV+  WR     +  + P  
Sbjct: 115 FHLLEQVD---VVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGS 171

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL------KRLGGEN 248
           F P PKV S V+  IP   P     + L+++ Q AF +RRK LR +L      K   GE 
Sbjct: 172 FNPPPKVDSAVVRMIPREQPADLDPKLLEELVQVAFSQRRKILRNTLGKWLEAKGFAGEF 231

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
            L +       RAE + + +F  +   L+
Sbjct: 232 DLQR-------RAEEVPVAEFEALAAQLS 253


>gi|188584688|ref|YP_001916233.1| dimethyladenosine transferase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|254807876|sp|B2A3L9|RSMA_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|179349375|gb|ACB83645.1| dimethyladenosine transferase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 302

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 30/289 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  Y+I PKK +GQNFL+D NI++KI  ++   +   V+EIG G G LT+  ++    +
Sbjct: 12  LLKRYEIHPKKSLGQNFLVDGNIIQKIIAAAELKEQDIVLEIGPGLGTLTRD-MSFYVNE 70

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP----------- 118
           +  IE DQ+   IL++      N + II +DALK+D+++    F   SP           
Sbjct: 71  IFAIELDQRMIDILQETVGSCDN-VNIIHNDALKLDYQELISDFIEFSPAQLQCKSKQIN 129

Query: 119 ---IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
              ++ ++NLPY I + L+   ++ +  P     + L+ Q+EV +R TA   S +YG ++
Sbjct: 130 PKNLKAVSNLPYYIASPLVLK-LAKEKVP--LSVMVLMVQREVADRFTASPGSKNYGAVT 186

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKR 233
           VL     +   +F++   VF+P P+V S V+               E   K   +AF  R
Sbjct: 187 VLLDCFYEVEGVFNVPKTVFYPQPRVESQVVKLTKRSEAKINDDYQEDFIKFVNQAFNSR 246

Query: 234 RKTLRQS-LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RKTL  + L    GE      +L   G    +R E L++++F +I  I+
Sbjct: 247 RKTLVNNILSIFTGEKSELSQILENNGFSAGIRGEQLTVDEFAQIFKII 295


>gi|255325442|ref|ZP_05366546.1| dimethyladenosine transferase [Corynebacterium tuberculostearicum
           SK141]
 gi|255297528|gb|EET76841.1| dimethyladenosine transferase [Corynebacterium tuberculostearicum
           SK141]
          Length = 300

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 22/280 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTL 68
           ++ +     I+P K +GQNFL D N +++I  ++  LD    V+E+G G G+LT + L  
Sbjct: 29  IRALAEKLDIVPTKKLGQNFLHDPNTIRRIV-AAAELDPTDRVLEVGPGLGSLT-LGLVE 86

Query: 69  GARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
               V  +E D +    L D     + ++  RL +++ DAL+V      +++ P  ++AN
Sbjct: 87  AVGDVTAVEIDSRLAAQLPDTVAERAPEYAQRLRVVEKDALRVTDS---DVTEPTALVAN 143

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +  +T+P     L ++ Q EV +R+ AQ  S  YG  SV  G+  K 
Sbjct: 144 LPYNVAVPVLLHLL--ETFPSIRRVLVMV-QLEVADRLAAQPGSKVYGVPSVKAGFYGKV 200

Query: 185 TMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQS 240
           +    I  +VF+P+P + S ++   +    P P   ES  K   +   AF +RRKTLR +
Sbjct: 201 SKAGTIGKNVFWPAPNIESGLVRIDVFEDAPWPITDESRSKVWPVIDAAFAQRRKTLRAA 260

Query: 241 LKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNI 275
           L    G        L  A I+   R E L++EDF R+  I
Sbjct: 261 LSGHFGSGAAAEEALRAADIDPKQRGEKLAVEDFVRLAGI 300


>gi|170762429|ref|YP_001752686.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920250|ref|ZP_02931616.1| dimethyladenosine transferase [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|183508664|ref|ZP_02958159.1| dimethyladenosine transferase [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701740|ref|ZP_02971428.1| dimethyladenosine transferase [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|27151612|sp|Q9PPN8|RSMA_UREPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028824|sp|B1AJP2|RSMA_UREP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|168828006|gb|ACA33268.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902651|gb|EDT48940.1| dimethyladenosine transferase [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|182676132|gb|EDT88037.1| dimethyladenosine transferase [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701010|gb|EDU19292.1| dimethyladenosine transferase [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 277

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 18/283 (6%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           NKS  +K  L     +P K MGQNFLL  NI  KI + +       ++EIG G G +T++
Sbjct: 2   NKSF-IKNKLKQESFVPSKKMGQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEI 60

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI-- 119
           L+      +I IE D++ +  LK  +    +   II +D L VD +     +N +  I  
Sbjct: 61  LVQ-KTNILIAIELDKRLYAHLK--TYIKTSNFHIINNDVLCVDLDNLILDYNNTQKIQK 117

Query: 120 -RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
            +++ANLPY I ++++   I +      +    ++ QKE+ ERI A+ N+  Y   +VL 
Sbjct: 118 IKVVANLPYAISSKIVLKIIQSKLINDAY----IMVQKEMAERIGAKVNTRGYNAFTVLV 173

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
               K  ++F+++   F P PKV S VIH     N +   +E L K  +  F  +RK L+
Sbjct: 174 QLFCKTKILFEVNAKEFHPQPKVQSAVIHLENLHNSVNFNIEELGKFLRICFLNKRKKLK 233

Query: 239 QSLKRLGGENLLHQA----GIETNLRAENLSIEDFCRITNILT 277
            +L  +    +++Q      ++ NLRAEN+  + F ++ N L 
Sbjct: 234 NNLSNIYDIKIINQMFIDYNLDMNLRAENIEPKMFLKLFNYLN 276


>gi|312133647|ref|YP_004000986.1| ksga [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772906|gb|ADQ02394.1| KsgA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 307

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 24/294 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D    ++    + +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D    F     ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227
           W   A  +  I  +VF+P+P V S ++ F  +    P               E + ++  
Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLVD 248

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 249 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302


>gi|325286669|ref|YP_004262459.1| Ribosomal RNA small subunit methyltransferase A [Cellulophaga
           lytica DSM 7489]
 gi|324322123|gb|ADY29588.1| Ribosomal RNA small subunit methyltransferase A [Cellulophaga
           lytica DSM 7489]
          Length = 286

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/266 (34%), Positives = 135/266 (50%), Gaps = 14/266 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL D  I ++IAE+        VIEIG G G LT+ +L      +I ++ D +
Sbjct: 25  KKHLGQHFLTDEAIAQQIAETLTHNGYTNVIEIGPGTGVLTKYILKHDLN-LIAMDLDTE 83

Query: 82  FFPIL-KDISSQHP---NR---LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
               L ++   +HP   NR    ++++ D LK D    F       I  N PYNI T+++
Sbjct: 84  SIAYLNQNFLLEHPELLNRKGTFKVVEADFLKQDLTTIFG-DEQFAISGNFPYNISTQIV 142

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +      P     T +FQKEV ERI +++ S  YG LSVLT     A  +F + P V
Sbjct: 143 FKTLEHKQQIP---EFTGMFQKEVAERICSKEGSKAYGILSVLTQAYYHAEYLFTVPPTV 199

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F P PKV S V+      N  I    + L ++ +  F +RRKT+R SLK     + L + 
Sbjct: 200 FNPPPKVDSGVLRLTRKENLDIGVDEKLLYRVVKAVFNQRRKTIRNSLKTFELSDNLKED 259

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
            I    R E L++EDF  +T  + ++
Sbjct: 260 PI-FGKRPEQLAVEDFVALTKKIAND 284


>gi|262201474|ref|YP_003272682.1| dimethyladenosine transferase [Gordonia bronchialis DSM 43247]
 gi|262084821|gb|ACY20789.1| dimethyladenosine transferase [Gordonia bronchialis DSM 43247]
          Length = 305

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 135/277 (48%), Gaps = 19/277 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N +++I   SG      V+E+G G G+LT  LL   
Sbjct: 34  IRQLAAEVGVRPTKTLGQNFVHDANTVRRIVAESGVGADDVVLEVGPGLGSLTLALLEQA 93

Query: 70  ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            R V+ +E D    Q+    + + ++      E+I  DAL+V  +      +P  ++ANL
Sbjct: 94  GR-VVAVEIDPVLAQRLPRTIAERAAARQGDFEVITADALRVTRDDL--PVAPTALVANL 150

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + ++   +P    +L ++ Q EV +R+ A+  S  YG  SV   +     
Sbjct: 151 PYNVAVPVLLHLLA--VFPEIRTAL-VMVQAEVADRLAAEPGSRTYGVPSVKARYHGTVR 207

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLK 242
               +   VF+P PKV S ++  I   +  P   E   ++  +   AF +RRKT+R +L 
Sbjct: 208 RAGAVGRSVFWPEPKVESGLVR-IERTDTYPVDDELRGAVFAVVDAAFAQRRKTMRSALA 266

Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
              G     E  L  AGI+  +R E L + DF R+  
Sbjct: 267 GWAGSPAEAERRLRAAGIDPGIRGERLGVADFVRLAQ 303


>gi|212278081|gb|ACJ23055.1| truncated KsgA [Neisseria gonorrhoeae]
          Length = 249

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 125/253 (49%), Gaps = 13/253 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+PK
Sbjct: 121 DDV----ADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPK 176

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 177 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 236

Query: 259 LRAENLSIEDFCR 271
            RAE+++ E   R
Sbjct: 237 DRAEHIAPEKLWR 249


>gi|227547072|ref|ZP_03977121.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212489|gb|EEI80378.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 321

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 24/294 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 28  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 87

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D    ++    + +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 88  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D    F     ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 202

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227
           W   A  +  I  +VF+P+P V S ++ F  +    P               E + ++  
Sbjct: 203 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLID 262

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 263 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 316


>gi|328773161|gb|EGF83198.1| hypothetical protein BATDEDRAFT_85801 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 326

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 145/315 (46%), Gaps = 50/315 (15%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGS--LDGITV-IEIGAGPGNLTQMLL 66
           L  ++S Y +  KK +GQNFLL   +   IA+ + +   DG T+ +E+G GPG LT+ LL
Sbjct: 6   LPQLISIYNVHAKKALGQNFLLRPGVTDSIAQHAVAKKRDGKTLHVEVGPGPGGLTRSLL 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----------I 115
            LG   ++ +EKD    P+L+ + +  P+R   +  D L+ D +  FN           +
Sbjct: 66  KLGVTHLVAVEKDASVAPMLQILQASVPSRFRFLLGDMLESDQQVLFNQIMTEAVECDRL 125

Query: 116 SSP--------------IRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQK 156
           S P              + I+ NLPY+I + LL  WI       +  S     +TL+ Q+
Sbjct: 126 SQPNSNSNPDNQPHFDKVHIVGNLPYSISSPLLHMWIKQAATEKYLFSFPKTEMTLMLQR 185

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           EV ERI A   +   GRLSVL        M+  +   +F P PKV   ++ F PH     
Sbjct: 186 EVCERIAAPVGTKVRGRLSVLCQAFFDVKMLSVVDRKLFRPVPKVDGGILQFKPHAE--- 242

Query: 217 CCLESLKKITQEAFGKRRKTL--------RQSLKR--LGGE-NLLHQAGIETNLRAENLS 265
                LK +  E F    K L        R  LKR  LG   ++L + GI+   R+  + 
Sbjct: 243 ---NRLKDVPYETFAHLVKVLHHHPNSMIRAILKRHNLGKVIDVLTECGIDPTSRSFMVD 299

Query: 266 IEDFCRITNILTDNQ 280
           ++ + R+    T ++
Sbjct: 300 VDSYIRLARRCTHDR 314


>gi|238020848|ref|ZP_04601274.1| hypothetical protein GCWU000324_00743 [Kingella oralis ATCC 51147]
 gi|237867828|gb|EEP68834.1| hypothetical protein GCWU000324_00743 [Kingella oralis ATCC 51147]
          Length = 257

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 126/262 (48%), Gaps = 17/262 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L   L    V  I++D 
Sbjct: 7   RKRFGQNFLQDTRIITDIVNAVRPQADDIVIEIGPGLAAITEPLARKLNQLHVCEIDRD- 65

Query: 81  QFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               I+  +  Q   N+L I + D L  DF    +I+   +I+ NLPYNI T LLF    
Sbjct: 66  ----IINHLKKQPFANKLVIHEGDVLNFDFR---SIAGRKKIVGNLPYNISTPLLFKLAE 118

Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            AD        +  + QKEV ER+ A   +  YGRLSV+  +      + D+ P  F P+
Sbjct: 119 VADEVI----DMHFMLQKEVVERMVAAPKTNDYGRLSVMLQYFFDMESLIDVPPESFIPA 174

Query: 199 PKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP    I    +      + + AF +RRKTLR +LK +  +  L   GI 
Sbjct: 175 PKVDSAVVRMIPVAGRIGIARDFARFADLVRLAFHQRRKTLRNNLKGVASDEDLQAVGIL 234

Query: 257 TNLRAENLSIEDFCRITNILTD 278
              RAE ++ E +  ++N L D
Sbjct: 235 PAQRAEEVAAEKYVALSNWLAD 256


>gi|225618959|ref|YP_002720185.1| putative dimethyladenosine transferase [Brachyspira hyodysenteriae
           WA1]
 gi|225213778|gb|ACN82512.1| putative dimethyladenosine transferase [Brachyspira hyodysenteriae
           WA1]
          Length = 281

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 136/270 (50%), Gaps = 20/270 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           I P K  GQNFL D NI   IA +  S    G   +EIG G G+L+ ML  +    + ++
Sbjct: 20  IFPNKNRGQNFLCDKNIAYNIANTIPSHLSRGEYALEIGGGLGSLSNMLHAVYKDNLTIV 79

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D   +  L     +  N ++I+  D L  D     N  +   +  N+PYNI + ++  
Sbjct: 80  EYDNALYNHL----IEKFNDIKIVHQDILTFDIS---NSENKYDVYGNIPYNIASPIM-E 131

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           W+  +++   W     + Q +  +R+ A++N+ +Y  L++   + +   + F++S  VF+
Sbjct: 132 WLLHESYDK-WNYAVFMVQSDFAQRLIAKENTENYSSLTLFANFMSNIKLEFNVSKDVFY 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ--------SLKRLGGEN 248
           P PKVTS+VI  IP        +E  K +++  F  RRKT+R         ++ +   + 
Sbjct: 191 PIPKVTSSVISIIPK-KVDTDIIEVFKSVSKTLFHNRRKTIRNNFIASPYLNIDKEYIDE 249

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +L+++ I+ N+R E L I+    ++NI+ +
Sbjct: 250 ILNKSNIDGNIRGETLHIDKVIELSNIVKE 279


>gi|257063482|ref|YP_003143154.1| dimethyladenosine transferase [Slackia heliotrinireducens DSM
           20476]
 gi|256791135|gb|ACV21805.1| dimethyladenosine transferase [Slackia heliotrinireducens DSM
           20476]
          Length = 296

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 137/288 (47%), Gaps = 22/288 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K    +T+L  + +  KK +GQNFL+   I+ KI E S       V+E+G G G LT  L
Sbjct: 9   KPSVTRTVLQRHGLATKKALGQNFLVSDAIIGKICELSEVCGQDDVLEVGPGIGTLTVAL 68

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRI 121
           L   A +V+ +E+D+    +L +      N   ++Q DAL +  E F  +     +P + 
Sbjct: 69  LPR-ANRVLSVERDRDLPAVLAETCGAFDN-FTLLQKDALDLREEDFACVPGDPFAPNKF 126

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY +   L+ ++          +S T++ Q EV +R++A+  +  YG  +V     
Sbjct: 127 VANLPYAVAATLVLDYFQKIES---IQSATVMVQSEVADRMSAKPATKEYGAYTVKLQLI 183

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
            K T  F +SP+ FFP P VTS+VI       L   P    +   +   AF +RRKT+  
Sbjct: 184 AKPTGRFQVSPNNFFPPPHVTSSVIRLDRRDDLGVTPDEAAAASMMADAAFTQRRKTVAN 243

Query: 240 SLKRLGGE-----------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           S+K+                ++  AGI+   R E L +E+F  +   L
Sbjct: 244 SMKQYFSRPQSPIDATDVPKMMQSAGIDARRRGETLGLEEFIELGRCL 291


>gi|294674235|ref|YP_003574851.1| dimethyladenosine transferase [Prevotella ruminicola 23]
 gi|294473004|gb|ADE82393.1| dimethyladenosine transferase [Prevotella ruminicola 23]
          Length = 263

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 131/269 (48%), Gaps = 26/269 (9%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           ++ PKK +GQ+FL DLNI K+IA++  +   I V+E+G G G +TQ L+    R   V+E
Sbjct: 3   QVRPKKNLGQHFLTDLNIAKRIADTVDACPNIPVLEVGPGMGVMTQYLVE-KPRPFKVVE 61

Query: 78  KD-------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            D       Q+ FP L D          II  D L++D  + F+      +  N PY+I 
Sbjct: 62  IDRESVAYLQENFPRLND---------NIIGGDFLRMDLREVFD-GQQFVLTGNYPYDIS 111

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           +++ F  +      P     T + Q EV  R+ +Q  +  YG LSVL         +F +
Sbjct: 112 SQIFFKMLDNKDLIP---CCTGMIQHEVAVRMASQPGNKQYGILSVLIQAWYNVEYLFTV 168

Query: 191 SPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
            P VF P PKV S VI    + +  + C  +  +++ +  F +RRK LR SL+++   N 
Sbjct: 169 EPGVFNPPPKVQSAVIRMTRNEVTDLGCDEQLFRRVVKATFNQRRKMLRVSLRQIFDANH 228

Query: 250 LHQAGIETN----LRAENLSIEDFCRITN 274
              AG   +     R E LSI  F  +TN
Sbjct: 229 PAPAGFFDDEIMTRRPEQLSIPQFIELTN 257


>gi|213693330|ref|YP_002323916.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|239622870|ref|ZP_04665901.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|317482342|ref|ZP_07941362.1| dimethyladenosine transferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690152|ref|YP_004209886.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis 157F]
 gi|254807861|sp|B7GPE3|RSMA_BIFLI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|213524791|gb|ACJ53538.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|239514867|gb|EEQ54734.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|316916222|gb|EFV37624.1| dimethyladenosine transferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320459512|dbj|BAJ70133.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320461488|dbj|BAJ72108.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 307

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 24/294 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D    ++    + +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D    F     ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227
           W   A  +  I  +VF+P+P V S ++ F  +    P               E + ++  
Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLID 248

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 249 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302


>gi|264680839|ref|YP_003280749.1| dimethyladenosine transferase [Comamonas testosteroni CNB-2]
 gi|262211355|gb|ACY35453.1| dimethyladenosine transferase [Comamonas testosteroni CNB-2]
          Length = 253

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 132/269 (49%), Gaps = 26/269 (9%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQNFL D  I+  I ++     G  ++EIG G   L+Q L+  LG   VI +
Sbjct: 2   KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLGKLTVIEL 61

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
           ++D      L+D        L++++ D LKVDF         + +R++ NLPYNI + +L
Sbjct: 62  DRDLAARLRLRD-------DLDVVESDVLKVDFRALAARLGVAKLRVVGNLPYNISSPIL 114

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +         +    + QKEV +R+ A   +  YGRLSV+  WR     +  + P  
Sbjct: 115 FHLLEQVD---VVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGS 171

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR------LGGEN 248
           F P PKV S V+  IP   P     + L+++ Q AF +RRK LR +L +        GE 
Sbjct: 172 FNPPPKVDSAVVRMIPREQPADLDPKLLEELVQVAFSQRRKILRNTLGKWLEARGFAGEF 231

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
            L +       RAE + + +F  +   L+
Sbjct: 232 DLQR-------RAEEVPVAEFEALAAQLS 253


>gi|269926972|ref|YP_003323595.1| dimethyladenosine transferase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790632|gb|ACZ42773.1| dimethyladenosine transferase [Thermobaculum terrenum ATCC BAA-798]
          Length = 288

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 144/291 (49%), Gaps = 20/291 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN  H  + IL  Y + PKK +GQNFL+   +L+ I ++S      T++EIG G G LT
Sbjct: 1   MNNNFHDPRLILKKYGLYPKKGLGQNFLISPKVLRTILQASEITPQDTILEIGPGTGVLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSP 118
           + L    AR V+ IE D+    IL+   +Q+PN + I+Q + L+++  +       I   
Sbjct: 61  RHL--AAARCVVAIELDETLVQILRQELAQYPN-IHIVQGNILEIEHPQLVAELCGIEKN 117

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
            +II NLPY I +  +  ++     P     + ++ QKEV ERITA    P    L+V  
Sbjct: 118 YKIIGNLPYYITSHAIRRFLEIQPSPSL---VIIMVQKEVAERITA--TPPKMSLLAVSV 172

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236
            +     M+  +    F P P+V S V+      +P+   + S    +I    F ++RK+
Sbjct: 173 QYYAIPEMVTLVRRTAFIPPPEVDSAVLRLRVREHPLFPDIPSDIYFRIVSAGFAQKRKS 232

Query: 237 LRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           L  SL             LL +A I+ N+RAE L++ED+ RI   L + + 
Sbjct: 233 LLNSLSSSLNLPKSRIATLLDKASIDHNVRAEQLTLEDWARICRQLMECES 283


>gi|300705123|ref|YP_003746726.1| s-adenosylmethionine-6-n',n'-adenosyl (rRNA) dimethyltransferase
           [Ralstonia solanacearum CFBP2957]
 gi|299072787|emb|CBJ44142.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Ralstonia solanacearum CFBP2957]
          Length = 281

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 126/261 (48%), Gaps = 15/261 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+  +   +V+ +++D 
Sbjct: 15  RKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRD- 73

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS- 139
               ++  +  +  ++L +   DAL  DF        P+RI+ NLPYNI + LLF+  + 
Sbjct: 74  ----LVARLQRRFGDKLVVHAGDALAFDFGALHVPGRPLRIVGNLPYNISSPLLFHLSAF 129

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           AD           + QKEV ER+ A   S  + RLSV+   R    ++ D+ P  F P P
Sbjct: 130 ADRV----RDQHFMLQKEVVERMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSFNPPP 185

Query: 200 KVTSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           KV S V+  IP     +P  P  + +L  +   AF +RRK LR +L  L         G 
Sbjct: 186 KVDSAVVRMIPWPADKSPYAPVDMRALGTVVALAFSQRRKVLRNTLGSLREAIDFDALGF 245

Query: 256 ETNLRAENLSIEDFCRITNIL 276
           +   RAE + + DF  + N L
Sbjct: 246 DLGRRAEEVPVADFVAVANAL 266


>gi|23465240|ref|NP_695843.1| dimethyladenosine transferase [Bifidobacterium longum NCC2705]
 gi|33516942|sp|Q8G6I3|RSMA_BIFLO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|23325870|gb|AAN24479.1| dimethyladenosine transferase ribosomal RNA adenine dimethylase
           [Bifidobacterium longum NCC2705]
          Length = 308

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 137/295 (46%), Gaps = 25/295 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D    ++    + +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D    F     ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-------------LESLKKIT 226
           W   A  +  I  +VF+P+P V S ++ F  +    P                E + ++ 
Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVRFTRYQADDPAAPGASNSTADGGTQRELVFRLI 248

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 249 DAAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 303


>gi|189440314|ref|YP_001955395.1| dimethyladenosine transferase [Bifidobacterium longum DJO10A]
 gi|226729757|sp|B3DP38|RSMA_BIFLD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189428749|gb|ACD98897.1| Dimethyladenosine transferase for rRNA methylation [Bifidobacterium
           longum DJO10A]
          Length = 307

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 24/294 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAANHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D    ++    + +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D    F     ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227
           W   A  +  I  +VF+P+P V S ++ F  +    P               E + ++  
Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLID 248

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 249 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302


>gi|260427332|ref|ZP_05781311.1| dimethyladenosine transferase [Citreicella sp. SE45]
 gi|260421824|gb|EEX15075.1| dimethyladenosine transferase [Citreicella sp. SE45]
          Length = 257

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 82/118 (69%), Gaps = 2/118 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ +++ + +  KK +GQNFLLDLN+  KIA  +G L G+ V+EIG GPG LT+ LL  G
Sbjct: 10  LREVIATHDLSAKKSLGQNFLLDLNLTAKIARQAGDLAGMDVLEIGPGPGGLTRGLLAEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           AR+V+ IEKD +    L +I++ +P RLE+I+ DAL+VD     +++ PI I ANLPY
Sbjct: 70  ARRVLAIEKDARCLSALAEIAAAYPGRLEVIEGDALQVD--PLQHLTPPIAICANLPY 125



 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 222 LKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L+++   AF +RRK LR +LK L    E+ L  + I    RAE +S+E FC +   L 
Sbjct: 200 LERVVAAAFNQRRKMLRAALKGLAPDIEDRLQASDIAPTDRAEQVSLEQFCALARTLA 257


>gi|257894901|ref|ZP_05674554.1| dimethyladenosine transferase [Enterococcus faecium 1,231,408]
 gi|257831280|gb|EEV57887.1| dimethyladenosine transferase [Enterococcus faecium 1,231,408]
          Length = 241

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 130/244 (53%), Gaps = 20/244 (8%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF- 109
           +IE+G G G LT+ L    A++V+  E D +  P+L D    + N + I+  D LK D  
Sbjct: 1   MIEVGPGIGALTEQLAK-HAKQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLS 58

Query: 110 ---EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
               + F+   P++++ANLPY I T ++ +++ +D      + L ++ QKEV +RI+A+ 
Sbjct: 59  TAVRETFHEELPLKVVANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEP 115

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKK 224
            +  YG LS+   +  +A++ F +   VF P P V S ++       P     +  +  +
Sbjct: 116 GTKAYGSLSIAVQYYMEASLAFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFR 175

Query: 225 ITQEAFGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNI 275
           +T+ AF +RRKTL  +L+   G++          L  AGI+   R E LS+++F  ++N 
Sbjct: 176 LTKAAFQQRRKTLWNNLQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNA 235

Query: 276 LTDN 279
           +++N
Sbjct: 236 MSEN 239


>gi|21673632|ref|NP_661697.1| dimethyladenosine transferase [Chlorobium tepidum TLS]
 gi|27151567|sp|Q8KE87|RSMA_CHLTE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21646748|gb|AAM72039.1| dimethyladenosine transferase [Chlorobium tepidum TLS]
          Length = 275

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 131/257 (50%), Gaps = 13/257 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K    H  I  KK +GQNFLLD NI +KI   SG  +G  V+EIG G G LT  +L +  
Sbjct: 3   KVEYKHTHIAAKKKLGQNFLLDRNIPRKIVRESGIKEGDRVVEIGPGFGALTTAILEVMP 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
                IEKD++   + K    +HP ++E+I+DD LKV  E        + ++ N+PY+I 
Sbjct: 63  -SFTAIEKDRE---LAKFNREEHP-QIELIEDDFLKVPLEP-LAAGGKLSVLGNIPYSIT 116

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +LF  +          S TL+ Q EV +RI A   +  YG L+V          +F +
Sbjct: 117 SPILFRLLDNRH---LIASATLMIQHEVAQRIAAVPGTKEYGILAVQMQAFCDVKYLFKV 173

Query: 191 SPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
              VF P P V S VI  +P  ++P+    E  +   +  F +RRKTL  +LK     + 
Sbjct: 174 GRAVFKPRPDVDSAVIKMVPKAVDPVKDS-EGFRTFVRRVFHQRRKTLLNNLKEYYDTSG 232

Query: 250 LHQAGIETNLRAENLSI 266
           + +  ++  LRAE+LS+
Sbjct: 233 VPEPTLK--LRAESLSV 247


>gi|296455131|ref|YP_003662275.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184563|gb|ADH01445.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 322

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 137/295 (46%), Gaps = 25/295 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 28  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 87

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D    ++    + +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 88  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D    F     ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 202

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-------------LESLKKIT 226
           W   A  +  I  +VF+P+P V S ++ F  +    P                E + ++ 
Sbjct: 203 WYGTAERVGTIGRNVFWPAPNVDSALVRFTRYQADDPAAPGASNSTADGGAQRELVFRLI 262

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 263 DAAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 317


>gi|169351499|ref|ZP_02868437.1| hypothetical protein CLOSPI_02279 [Clostridium spiroforme DSM 1552]
 gi|169291721|gb|EDS73854.1| hypothetical protein CLOSPI_02279 [Clostridium spiroforme DSM 1552]
          Length = 268

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 143/279 (51%), Gaps = 34/279 (12%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y +   K  GQNFL+D+N++ KI + +     + VIE+G G G LTQML   G 
Sbjct: 11  KYILDKYNLNALKKYGQNFLIDINVVNKIIKETRIDKDVAVIEVGPGIGALTQMLSRYGG 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK-------VDFEKFFNISSPIRIIA 123
            KVI  E D++F P+  +      + LEII  D +K       VD +K +   S + ++A
Sbjct: 71  -KVISFEIDERFRPVYDEFLI--ADNLEIIFGDFMKQEINKIVVDLKKTY---SKVYLVA 124

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I T ++   I +D      + L ++ QKEV  ++T+   +P    L ++     K
Sbjct: 125 NLPYYITTAIIEKVILSDCN---IDQLIVMVQKEVALKMTSDYKNP----LLLMIKDMGK 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFI----PHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
              +F ++ +VF P+P V S +I  +    P+L         L  I    F +RRKT+  
Sbjct: 178 VEYLFTVNKNVFLPAPHVDSAIIKIVLTKKPNL--------KLYDILNVCFKQRRKTIYN 229

Query: 240 SLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNIL 276
           +LK+     L  L +  I+T  R+E LS+ DF  IT+++
Sbjct: 230 NLKKEYSNALEILEKCKIDTKKRSEELSLNDFKNITDMI 268


>gi|46190717|ref|ZP_00206545.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Bifidobacterium longum DJO10A]
          Length = 321

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 24/294 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 28  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAANHVMEVGPGLGSLTLAIL 87

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D    ++    + +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 88  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D    F     ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 202

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227
           W   A  +  I  +VF+P+P V S ++ F  +    P               E + ++  
Sbjct: 203 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLID 262

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 263 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 316


>gi|322692102|ref|YP_004221672.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320456958|dbj|BAJ67580.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 307

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 136/289 (47%), Gaps = 24/289 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D    ++    + +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D    F     ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------------LESLKKITQ 227
           W   A  +  I  +VF+P+P V S ++ F  +    P               E + ++  
Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLID 248

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +
Sbjct: 249 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAI 297


>gi|302345754|ref|YP_003814107.1| dimethyladenosine transferase [Prevotella melaninogenica ATCC
           25845]
 gi|302150103|gb|ADK96365.1| dimethyladenosine transferase [Prevotella melaninogenica ATCC
           25845]
          Length = 267

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 136/268 (50%), Gaps = 15/268 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DL+I ++IA++  +   I V+EIG G G LTQ L+    R+V  +E D 
Sbjct: 6   PKKNLGQHFLTDLSIARQIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEIDS 64

Query: 81  QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    L +   + P  R  I+  D L++D  + F+   P  +  N PY+I +++ F  + 
Sbjct: 65  ESVAFLYE---KFPKLRENILGQDFLRMDLNEVFD-GRPFVLTGNYPYDISSQIFFKMLE 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     T + Q+EV +R+ A   S  YG LSVL         +F +  +VF P P
Sbjct: 121 YKDLIP---CCTGMIQREVAQRMAAGPGSKTYGILSVLMQAWYNVEYLFTVDENVFNPPP 177

Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQAG 254
           KV S VI    + +  I C     K++ +  F +RRK LR SL+++       +  ++  
Sbjct: 178 KVKSAVIRMTRNEVTDIGCDQVLFKRVVKTVFNQRRKMLRVSLRQIFNAVKPTDGFYEQD 237

Query: 255 IETNLRAENLSIEDFCRITNILTDNQDI 282
           I T  R E LSI  F  +TN++ +   I
Sbjct: 238 IMTK-RPEQLSIAQFVELTNMVDEQLKI 264


>gi|29830130|ref|NP_824764.1| dimethyladenosine transferase [Streptomyces avermitilis MA-4680]
 gi|33516923|sp|Q82HC3|RSMA_STRAW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|29607240|dbj|BAC71299.1| putative dimethyladenosine transferase [Streptomyces avermitilis
           MA-4680]
          Length = 295

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 140/286 (48%), Gaps = 19/286 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++G      V+E+G G G+LT  LL   
Sbjct: 15  IRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPDDVVVEVGPGLGSLTLALLE-A 73

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPNRLE---IIQDDALKVDFEKFFNISSPIRIIANL 125
           A +VI +E D      L   I+++ P R E   ++  DA+ V   +      P  ++ANL
Sbjct: 74  ADRVIAVEIDDVLAGALPATIAARMPERAERFALVHSDAMHV---RELPGPPPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  DT+P    +L ++ Q EV +R+ A   S  YG  SV   W  +  
Sbjct: 131 PYNVAVPVLLHML--DTFPSIERTL-VMVQAEVADRLAADPGSRVYGVPSVKANWHAEVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238
               I  +VF+P+P V S ++  +    PI       +   +   AF +RRKTLR     
Sbjct: 188 RAGSIGRNVFWPAPNVDSGLVSLVRRTEPIKTTASKTEVFAVVDAAFAQRRKTLRAALAG 247

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT-NILTDNQDIA 283
            +      E  L  AG+    R E+L++E+F RI  N   D+ D A
Sbjct: 248 WAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAENRGADHADDA 293


>gi|124265397|ref|YP_001019401.1| dimethyladenosine transferase [Methylibium petroleiphilum PM1]
 gi|166221677|sp|A2SC77|RSMA_METPP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|124258172|gb|ABM93166.1| dimethyladenosine transferase [Methylibium petroleiphilum PM1]
          Length = 256

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 121/254 (47%), Gaps = 13/254 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K I +K  GQ+FL D  ++  I        G  ++EIG G G +T  L+      + V+E
Sbjct: 2   KHIARKRFGQHFLSDAAVVDAIVGLIDPRPGQALVEIGPGLGAMTDPLVAR-CEHLTVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFN 136
            D+           +    L++I+ D L+VDF      S+  +RI+ NLPYNI T +LF+
Sbjct: 61  LDRD-----LAARLRRRAELQVIESDVLRVDFAALAMASAGRLRIVGNLPYNISTPILFH 115

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            + A       E    + QKEV ER+ A   S  YGRLSV+  WR     + D+ P  F 
Sbjct: 116 LLPAAAQ---VEDQHFMLQKEVVERMAAAPCSKDYGRLSVMLQWRYDIESVLDVPPEAFE 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL-KRLGGENLLHQAGI 255
           P P+V S V+  +P   P       L ++   AF +RRK LR +L K L           
Sbjct: 173 PPPRVNSAVVRMLPFPAPPAVDAALLGELVATAFSQRRKLLRHTLGKWLDAREF--SGTF 230

Query: 256 ETNLRAENLSIEDF 269
           +T  RAE + + D+
Sbjct: 231 DTQRRAEEVPVADY 244


>gi|162446903|ref|YP_001620035.1| dimethyladenosine transferase [Acholeplasma laidlawii PG-8A]
 gi|161985010|gb|ABX80659.1| dimethyladenosine transferase [Acholeplasma laidlawii PG-8A]
          Length = 262

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 137/267 (51%), Gaps = 21/267 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQNFL D N+LKKI +S+   D   V+EIG G G LTQ ++   A+K +  E D 
Sbjct: 4   AKKRFGQNFLTDKNLLKKIVDSAQIHDK-NVLEIGPGLGALTQFIVK-DAKKYLAYEIDY 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFN 136
               +L++  S+  N   II  D L+ D     + +F    PI +I NLPY I T ++F 
Sbjct: 62  SLKDVLENFLSEDSN---IIFQDFLESDVTNDLDTYFK-GEPIHLIGNLPYYITTPIIFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           ++  D      ++ T++ QKEVG+R+ ++KN   Y   S +  + T   ++ +++  +F 
Sbjct: 118 FLEIDQL----KTATIMVQKEVGDRMISKKNLKSYNAFSAILQYFTDVRLVVNVNRKMFN 173

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENL------ 249
           P PKV S V+        +   LE    +I + +F  +RKTL  +L     E+       
Sbjct: 174 PVPKVDSMVVQLTKKETKLDKSLELKFIQIVKLSFMHKRKTLLNNLSTGLNEDKAKILES 233

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L    ++   RAE+LS++DF  +T  L
Sbjct: 234 LKSLNLDEKTRAESLSVDDFITLTEKL 260


>gi|20806642|ref|NP_621813.1| dimethyladenosine transferase (rRNA methylation)
           [Thermoanaerobacter tengcongensis MB4]
 gi|27151574|sp|Q8RDC8|RSMA_THETN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|20515090|gb|AAM23417.1| Dimethyladenosine transferase (rRNA methylation)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 268

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 145/267 (54%), Gaps = 18/267 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQNF+ D N+L KI  +SG  +   V+E+G G G LT+ L     +KV+  E D+
Sbjct: 3   AKKKWGQNFIFDKNLLSKIVRASGVGEEDFVLEVGTGHGGLTEELAK-KVKKVVSFEIDK 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFN 136
           + F + ++    + N + II +D L+VD     ++ F+ +S  +++ANLPY I + ++  
Sbjct: 62  ELFEMSREKLKIYKNVV-IINEDILEVDLLEIAQEHFDGNS-FKVVANLPYYITSPIIMK 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +         + +T+L QKEV ERI A   +  YG L+V   ++ K  ++F++ P VF 
Sbjct: 120 MLDC----KLVKEMTVLVQKEVAERICALPGTKDYGMLTVFVNFKAKPEILFNLPPKVFV 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-GENLLHQ- 252
           P PKV S+++    +  P+    +     ++ + AFG+RRK L  SLK LG  + +LH+ 
Sbjct: 176 PPPKVESSLLKLKVYDKPLVEVKDEKLFSEVVRAAFGQRRKVLSNSLKVLGFSKEVLHET 235

Query: 253 ---AGIETNLRAENLSIEDFCRITNIL 276
               GI    R E LSI+ F  + N L
Sbjct: 236 LLKVGISPQARGETLSIDQFANLANAL 262


>gi|317120934|ref|YP_004100937.1| dimethyladenosine transferase [Thermaerobacter marianensis DSM
           12885]
 gi|315590914|gb|ADU50210.1| dimethyladenosine transferase [Thermaerobacter marianensis DSM
           12885]
          Length = 310

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 24/290 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
            +   L+  L  Y + P + +GQNFL+D +  ++I  +        V+E+G G G LT+ 
Sbjct: 13  TRRAELRRWLEQYGVRPSRRLGQNFLVDDHWAERIVGAVEPGPDDVVLEVGPGLGALTER 72

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NI 115
           L+    R V+ +E D++    L+   +   N  +++  D L+VD              + 
Sbjct: 73  LVRRAGR-VVAVEVDRRLAEALRQRLACVDN-FQLVVADVLQVDLADLVARHLAPVGGDD 130

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
              +++ +NLPY I +  L  W+ +      WE   L  Q EV +R+ A   +  YG L+
Sbjct: 131 MPAVKLASNLPYAITSPFLVRWLGSSV---RWERAVLTLQAEVVDRLVAAPGTAAYGALT 187

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGK 232
           V   +  +   +  +    F+P P+V S V+   PH  P P  +   ++L  + + AF +
Sbjct: 188 VFVAYHARVERLGIVPAGAFWPRPEVDSAVVRLWPHPQP-PVAVADPDALFALVRAAFSQ 246

Query: 233 RRKTLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RRK L  +L       R   E     AG++   R E + +E F R+ N L
Sbjct: 247 RRKRLANALAAHPAVDRRQAEAACRAAGLDPGARPEEVDLEGFARLANQL 296


>gi|269123293|ref|YP_003305870.1| dimethyladenosine transferase [Streptobacillus moniliformis DSM
           12112]
 gi|268314619|gb|ACZ00993.1| dimethyladenosine transferase [Streptobacillus moniliformis DSM
           12112]
          Length = 273

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 126/263 (47%), Gaps = 13/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D  +L+KI E +       +IEIG G G LT M+L  GA K+   E D  
Sbjct: 13  KKKFGQNFLDDKILLEKIKEVTNISVNDNIIEIGPGIGFLTSMILESGA-KLKSFEIDND 71

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P+L      + N  E+I  D L  + E         R+IAN+PY I   ++   +   
Sbjct: 72  LIPVLNKKFGNYEN-FELIHVDFLLYNLENIMGKGKEYRVIANIPYYITAPIINKLLE-- 128

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +    + + L+ QKEVGER+  +KN+ + G  + + G+ +K   +F +    F P PKV
Sbjct: 129 -FKDNIKDIYLMVQKEVGERLNFEKNTSNKGVFTHVVGFHSKVEYLFTVEKEFFDPIPKV 187

Query: 202 TSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQA 253
            S  I   I            E   K  + +F  +RK++  +LK +G      EN L   
Sbjct: 188 DSAFIRINIDKEEKYSKMISFEKYLKYVKASFASKRKSISNNLKTIGISKGITENALVFI 247

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
           G   N RAE LSIEDF  + NI+
Sbjct: 248 GKNNNSRAEELSIEDFIALINII 270


>gi|297564142|ref|YP_003683115.1| dimethyladenosine transferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848591|gb|ADH70609.1| dimethyladenosine transferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 293

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 129/277 (46%), Gaps = 21/277 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++T+   + I P K +GQNF++D   +++I   +G  +   V+E+G G G+LT  LL   
Sbjct: 21  VRTLAERFGIRPTKTLGQNFVIDHGTVRRIVRVAGVTEEDAVVEVGPGLGSLTLALLPH- 79

Query: 70  ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            R V  +E D      L    + H     +RL ++  DA++V          P  ++ANL
Sbjct: 80  VRHVTAVEIDPALAEALPGTVADHAPDLADRLTVVHGDAMRV---TGLPGPEPTALVANL 136

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +           + ++ Q EV +R+TA      YG  S    W   A 
Sbjct: 137 PYNVSVPVLLHLLELLP---SLRRVLVMVQAEVADRVTASPGGRVYGVPSAKVAWYAGAR 193

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ---EAFGKRRKTLRQSLK 242
               +  +VF+P+P V S ++  I    P P    S +++ Q    AF +RRKTLR +L 
Sbjct: 194 RAGAVGRNVFWPAPNVDSGLVELI--RRPPPATTASREEVFQVIDAAFAQRRKTLRAALA 251

Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
              G     E  L  AG++ + R E+L +  F  I  
Sbjct: 252 GWAGSPPAAETALRAAGVDPSARGESLDVTAFAAIAE 288


>gi|312797254|ref|YP_004030176.1| Dimethyladenosine transferase [Burkholderia rhizoxinica HKI 454]
 gi|312169029|emb|CBW76032.1| Dimethyladenosine transferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 286

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 129/267 (48%), Gaps = 18/267 (6%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL+D  ++  I E+        ++EIG G G LT  LL    + +  
Sbjct: 6   HQGHFARKRFGQNFLVDTGVIDAIVEAIRPQPADRLVEIGPGLGALTAPLLER-VQTLHA 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTR 132
           +E D+    ++  +  +  +RL +   DAL  DF    +   I + +R++ NLPYNI + 
Sbjct: 65  VELDRD---LIARLQQRFGSRLVLHAGDALAFDFASLADPAHIGASLRVVGNLPYNISSP 121

Query: 133 LLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           LLF+  S      F + +     + Q EV ER+ A+  S  Y RL+V+  +R     + +
Sbjct: 122 LLFHLAS------FADEVIDQHFMLQDEVVERMVAEPGSKDYSRLTVMLQYRYAIDKLIE 175

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P+PKVTS V+  IP    +  P  +  L ++   AF +RRK LR +L    G 
Sbjct: 176 VPPESFEPAPKVTSAVVRMIPRAAGDVPPVDIVRLGEVVTAAFSQRRKMLRNTLAAYRGR 235

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITN 274
                 G +   RAE++ + ++  +  
Sbjct: 236 VDFDALGFDLARRAEDVPVLEYVALAQ 262


>gi|320103121|ref|YP_004178712.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644]
 gi|319750403|gb|ADV62163.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644]
          Length = 325

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 141/296 (47%), Gaps = 35/296 (11%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+T+     I P+K  GQNFL+DLN+   I  +        V+E+G G G LT+ +  LG
Sbjct: 9   LRTLFEREGIAPRKRYGQNFLIDLNLHDVIVAAGEVGPNDVVLEVGPGAGALTRRMADLG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK---------VDFEKFFNISSPI- 119
           A  VI +E D     + ++     PN + ++Q DAL          +D  +      P+ 
Sbjct: 69  A-AVIAVEIDPAMARLTRNAVEGRPN-VRVLQRDALANKNRIAPEVLDAVRAGLAVDPVA 126

Query: 120 ---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
              +++ANLPYN+ T +L N + A+   P  E + +  Q EV ERI A   +  YG LSV
Sbjct: 127 RRFKLVANLPYNVATPILTNLLVAEE--PRVELMAVTIQWEVAERIVATPGTSAYGALSV 184

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL------KKITQEAF 230
           LT     A ++  + P VF+P P V S ++     + P P     L      + + +  F
Sbjct: 185 LTNALASAEIVRKLPPSVFWPRPLVDSAIM----VIRPDPARRTRLGDVVWFQSVIRRVF 240

Query: 231 GKRRKTLRQS--------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             RRK +R+         L +   E+LL QA +  + RAE ++++    + + L +
Sbjct: 241 NHRRKNIRRVLHGYYRDMLTKSDIEDLLSQAELAPDARAETMTVDQLVGLAHRLKE 296


>gi|34539998|ref|NP_904477.1| dimethyladenosine transferase [Porphyromonas gingivalis W83]
 gi|188994112|ref|YP_001928364.1| dimethyladenosine transferase [Porphyromonas gingivalis ATCC 33277]
 gi|62900561|sp|Q7MXN7|RSMA_PORGI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732608|sp|B2RHC2|RSMA_PORG3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|34396309|gb|AAQ65376.1| dimethyladenosine transferase [Porphyromonas gingivalis W83]
 gi|188593792|dbj|BAG32767.1| putative dimethyladenosine transferase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 258

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 128/260 (49%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           ++  KK +GQ+FL DL+I ++IA++      + V+EIG G G LTQ LL  G   V VIE
Sbjct: 3   RVKAKKALGQHFLRDLSIAERIADTLSEHKALPVLEIGPGMGVLTQFLLRKG-HDVRVIE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    L++   +  +R  II+ D L     + F       +I N PYNI +++ F  
Sbjct: 62  IDGESVSYLREEFPELSDR--IIEGDFLHYPLSELFPGGRQYCLIGNYPYNISSQIFFRL 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P       + Q+EV  R+ +      YG LSVL         +F +   VF P
Sbjct: 120 LDVREQIPCCSG---MLQREVAMRLASPPGKKDYGILSVLLQLWYNIEYLFTVDASVFDP 176

Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    +    +PC  ++LK + + AFG+RRKTLR SL+ +            
Sbjct: 177 PPKVQSGVIRLTRNDRKELPCSEKALKTVVKTAFGQRRKTLRNSLRGILPAGFDRFDEPV 236

Query: 257 TNLRAENLSIEDFCRITNIL 276
            + R E LS +DF  +T +L
Sbjct: 237 FSKRPEQLSPDDFIALTLLL 256


>gi|256830231|ref|YP_003158959.1| dimethyladenosine transferase [Desulfomicrobium baculatum DSM 4028]
 gi|256579407|gb|ACU90543.1| dimethyladenosine transferase [Desulfomicrobium baculatum DSM 4028]
          Length = 280

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 133/266 (50%), Gaps = 12/266 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PK+ +GQNFL D NI ++I  S     G  V+EIG G G LT++L       V+ +EKD 
Sbjct: 9   PKRSLGQNFLSDPNICRRIVASLELAPGDPVLEIGPGRGALTRILAGHDG-PVMALEKDS 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +   ++  I ++ P  + ++  D L   +E    +   + +I NLPYN+ + +++  +S 
Sbjct: 68  E---LVSWIKAEFPA-VGVVHADGLDFCWEGTRRLPG-LSLIGNLPYNVASPMIWEMVSR 122

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 + S+  + QKEV  R+TA++ S  YG LS   G   +   +F + PHVF P PK
Sbjct: 123 CR---SFRSMLFMVQKEVALRLTAKEGSRTYGALSAWVGNFVRGEYVFTVPPHVFRPQPK 179

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAGIET 257
           V S ++ F+P  +P      +L    +  F +RRK L   LK    E +     + G++ 
Sbjct: 180 VDSAIVRFLPRPDPAWEDAAALSWTVKILFQQRRKQLGTILKAHWSEAVETWCGELGVDR 239

Query: 258 NLRAENLSIEDFCRITNILTDNQDIA 283
            +R E LS +    +  +L    + A
Sbjct: 240 RVRPEELSPDALRSLARVLDPKNEAA 265


>gi|221069848|ref|ZP_03545953.1| dimethyladenosine transferase [Comamonas testosteroni KF-1]
 gi|220714871|gb|EED70239.1| dimethyladenosine transferase [Comamonas testosteroni KF-1]
          Length = 253

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 16/264 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQNFL D  I+  I ++     G  ++EIG G   L+Q L+  LG   VI +
Sbjct: 2   KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLGKLTVIEL 61

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
           ++D      L+D        L++++ D LKVDF         + +R++ NLPYNI + +L
Sbjct: 62  DRDLAARLRLRD-------DLDVVESDVLKVDFRALAARLGVAKLRVVGNLPYNISSPIL 114

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +         +    + QKEV +R+ A   +  YGRLSV+  WR     +  + P  
Sbjct: 115 FHLLEQVD---VVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGS 171

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL-KRLGGENLLHQA 253
           F P PKV S V+  IP   P     + L+++ Q AF +RRK LR +L K L  +    + 
Sbjct: 172 FNPPPKVDSAVVRMIPREQPADLDPKLLEEMVQVAFSQRRKILRNTLGKWLEAKGFTGEF 231

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
            ++   RAE + + +F  +   L+
Sbjct: 232 DLQR--RAEEVPVGEFEALAAQLS 253


>gi|212715125|ref|ZP_03323253.1| hypothetical protein BIFCAT_00011 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661806|gb|EEB22381.1| hypothetical protein BIFCAT_00011 [Bifidobacterium catenulatum DSM
           16992]
          Length = 309

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 22/287 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 22  AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHVLEVGPGLGSLTLAIL 81

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D    ++    + +      +R  ++  DAL V  E    FN      
Sbjct: 82  ETGA-TMTAVEIDPPVAERLPGTIAEFMPDAVDRFRVVNRDALTVTPENLPDFNNDDSFT 140

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D    F     ++ QKEV +R++ +  S  YG  SV   
Sbjct: 141 LVANLPYNVATPILLTLLERFDNLGTFL----VMVQKEVADRLSEKPGSKIYGTPSVKLA 196

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVI--------HFIPHLNPIPCCL--ESLKKITQEA 229
           W   A  +  I  +VF+P+P V S ++        H     NP    +  E++ ++   A
Sbjct: 197 WYGTAERVGIIGRNVFWPAPNVDSALVLFKRYEGGHTSSANNPDGSVVDRETVFRLIDAA 256

Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           FG+RRKTL  +LK++       +AGI+   R E L+I++F  +   +
Sbjct: 257 FGQRRKTLHAALKKVVPSEAFERAGIDPTRRGETLTIDEFVALARAM 303


>gi|294495698|ref|YP_003542191.1| dimethyladenosine transferase [Methanohalophilus mahii DSM 5219]
 gi|292666697|gb|ADE36546.1| dimethyladenosine transferase [Methanohalophilus mahii DSM 5219]
          Length = 229

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 21/234 (8%)

Query: 17  YKIIPKKY------MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           Y I+ KKY      + Q+FL++  IL  IAE++       V+EIG G GNLT+ L++   
Sbjct: 3   YSIL-KKYGIRGGSLDQHFLVNEPILDSIAEAADLQIDDVVLEIGGGIGNLTERLVSRAG 61

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           R VIVIE+D +   +L+D      N ++II+ DA+KV+   F       +++ANLPY+I 
Sbjct: 62  R-VIVIERDSRLVAVLQDRFHNVSN-IDIIEGDAMKVELPTFN------KVVANLPYSIS 113

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + + F  ++       +E   L++Q E   R+     S +YGRLSV T +     ++  I
Sbjct: 114 SPITFRLLNHG-----FEKGILMYQYEFARRMVEAPGSKNYGRLSVDTQYFADVRLLRKI 168

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKR 243
           SP  F P+PKV S V+  +P         E L  ++ + AFG+RRK ++ +L +
Sbjct: 169 SPSAFTPAPKVWSAVVEVVPRPPAFEVKNEQLFFRVVEAAFGQRRKKMKNALTK 222


>gi|303232891|ref|ZP_07319575.1| dimethyladenosine transferase [Atopobium vaginae PB189-T1-4]
 gi|302481081|gb|EFL44157.1| dimethyladenosine transferase [Atopobium vaginae PB189-T1-4]
          Length = 351

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 122/274 (44%), Gaps = 19/274 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  + +  K  +GQNFL+D  ++ KI   +      +++E+G G G L+  LL    
Sbjct: 57  RRVLEQHGLYAKHRLGQNFLVDDAVIGKILALAQPRAHTSLLEVGPGIGTLSLALLQQHC 116

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD------FEKFFNISSPIRIIAN 124
            ++I IEKD     +L    + + N + +   DAL+VD      F K  NI  P  ++AN
Sbjct: 117 -QLIAIEKDDDLLDVLASTCALYENAMHVYHSDALRVDAASLQAFCKARNIPQPAALVAN 175

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I   L+  +   D   P  E +T++ Q EV  R+ A+ +   YG  S         
Sbjct: 176 LPYQIAATLVLQYFE-DM--PQLERMTVMVQSEVACRMAAKPHDKLYGAYSAKLALYAAP 232

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQS 240
              F + P  F P+P VTS VI    H      C   L++    +   AF +RRKTL   
Sbjct: 233 AGSFVVKPSSFMPAPHVTSQVIALQRHAQADLVCDGELRRRVCVLIDAAFAQRRKTLVNC 292

Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDF 269
           L   G         L +  +   +RAE L    F
Sbjct: 293 LSAAGIAPDAARACLREMQLAPAIRAEVLCAAQF 326


>gi|55377170|ref|YP_135020.1| dimethyladenosine transferase [Haloarcula marismortui ATCC 43049]
 gi|62900484|sp|Q5V588|RSMA_HALMA RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|55229895|gb|AAV45314.1| dimethyladenosine transferase [Haloarcula marismortui ATCC 43049]
          Length = 285

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 132/266 (49%), Gaps = 34/266 (12%)

Query: 27  QNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           Q+FL+D  +L +I E  +   +D   V+EIGAGPG LT  LL   A +V  +E+D  F  
Sbjct: 28  QHFLVDDRVLDRIPEYATDADIDLSHVLEIGAGPGALTDRLLAT-AERVTAVERDPDFAA 86

Query: 85  ILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L++  ++    +RL I++ DAL+VD   F         I+NLPY   + + F  +    
Sbjct: 87  HLREEFTEEVAADRLTIVEGDALEVDLPDF------TASISNLPYGASSEIAFRLL---- 136

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             P    L L+FQ+E  ER+ A   +  YGRLSV  G      ++  + P  F P P+VT
Sbjct: 137 --PEQRPLLLMFQQEFAERMAADPATDDYGRLSVTAGHYADVEVVETVPPEAFDPQPRVT 194

Query: 203 STVIHFIPHLNP--IPC---CLESLKKITQEAFGKRRKTLRQSLKR------LGGENLLH 251
           S ++  +P      +P     ++ LK +    F +RRKT+R +++       LG  + + 
Sbjct: 195 SALVRTMPRTPDYTVPSDDFFMDFLKAV----FTQRRKTMRNAVRNTAHISGLGDPDAVV 250

Query: 252 QAGIE--TNLRAENLSIEDFCRITNI 275
           +A  E   + RA  L+  DF  +  +
Sbjct: 251 EAADEGLMSARAGKLTPADFATLATL 276


>gi|20090300|ref|NP_616375.1| dimethyladenosine transferase [Methanosarcina acetivorans C2A]
 gi|27151576|sp|Q8TQU8|RSMA_METAC RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|19915300|gb|AAM04855.1| dimethyladenosine rRNA methyltransferase [Methanosarcina
           acetivorans C2A]
          Length = 269

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 142/280 (50%), Gaps = 27/280 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +++IL+ Y I    +  Q+FL+D+  L +I  ++      T++EIGAG GNLT+ L    
Sbjct: 2   VRSILNKYNIKGGTF-DQHFLIDIGYLDRIVVAAELSPQDTILEIGAGIGNLTERL-ARR 59

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI +E D     +L D   +  N +E+I  DALKVDF +F       ++++NLPY+I
Sbjct: 60  AKKVIAVELDPALVSVLHDRFDKVEN-IEVIAGDALKVDFPEF------DKVVSNLPYSI 112

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F  +        ++   L++Q E   R+ +      Y RL+V T +   A+++  
Sbjct: 113 SSEITFKLLRYK-----FKLGILMYQYEFAARMVSPPGRKDYSRLTVDTYYFADASILMK 167

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN 248
           +    F P+P+V S V+  +P  +P     E+   +     F +RRK LR S+  L   +
Sbjct: 168 VPKGAFQPAPEVDSAVVKLVPRPSPFEVRDEAFFLEFVAAVFSQRRKKLRNSI--LNTNS 225

Query: 249 LLHQAGIE----------TNLRAENLSIEDFCRITNILTD 278
           +L    I+           N RAENL+ E+   + N+L D
Sbjct: 226 MLKIPDIKEVVNQLPDDFVNKRAENLTPEELASVANMLFD 265


>gi|20094370|ref|NP_614217.1| dimethyladenosine transferase (rRNA methylase) [Methanopyrus
           kandleri AV19]
 gi|27151577|sp|Q8TWU7|RSMA_METKA RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|19887438|gb|AAM02147.1| Dimethyladenosine transferase (rRNA methylase) [Methanopyrus
           kandleri AV19]
          Length = 278

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 24/239 (10%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L  + S Y I P++ +GQ+F++D NIL+ + E++   +   V+EIG GPG LT+ L+T  
Sbjct: 7   LAYLRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMT-R 65

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +VI +E D +   ILK    + PN LEI++ D L+ D     N     +++AN+PYNI
Sbjct: 66  AGQVIAVELDGRMVEILKRELGEAPN-LEIVRADFLEYDVPDDVN-----KVVANIPYNI 119

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F  +  D      +   L +Q+E  ER+ A+  S  Y RL+V+        ++  
Sbjct: 120 SSPITFKLLELDI-----DVAVLTYQREFAERMVAEPGSKKYSRLTVMVNLLADVELLRG 174

Query: 190 ISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           +    F P P+V S+V+   P        ++P     ++L+ + +  F  + KT+R +L
Sbjct: 175 VPRRAFIPPPRVGSSVVRLTPKSEEERPDVDP-----DTLESVCRALFQHKNKTVRNAL 228


>gi|307728472|ref|YP_003905696.1| dimethyladenosine transferase [Burkholderia sp. CCGE1003]
 gi|307583007|gb|ADN56405.1| dimethyladenosine transferase [Burkholderia sp. CCGE1003]
          Length = 276

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 132/277 (47%), Gaps = 29/277 (10%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   I +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L+     ++  
Sbjct: 11  HQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIE----RLAT 66

Query: 76  IEKDQQFFPILKDISSQHPNR----LEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126
            E       + +D+  +  NR    LE+   DAL  DF    ++++P     +RI+ NLP
Sbjct: 67  PEAPLHAVELDRDLIGRLKNRFGALLELHAGDALAFDFG---SLAAPGDAPSLRIVGNLP 123

Query: 127 YNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           YNI + LLF+  S      F   +     + Q EV ER+ A+  +  + RLSV+  +R  
Sbjct: 124 YNISSPLLFHLTS------FAHRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYV 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRKTLRQS 240
                D+ P  F P PKV S ++  IP   P    P     L ++   AF +RRK LR +
Sbjct: 178 IDKQLDVPPEAFQPPPKVDSAIVRMIP-FAPHELAPVDERVLGEVVTAAFSQRRKMLRNT 236

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L  L G       G +   RAE++ + ++ R+  ++ 
Sbjct: 237 LAGLRGTVDFDAIGFDLQRRAEDVPVAEYVRVAQLVA 273


>gi|289185434|gb|ADC91854.1| dimethyl adenosine transferase [Paenibacillus popilliae]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 106/191 (55%), Gaps = 9/191 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL+D+NI+++I +++        +EIG G G LT+ L+     +V  +E DQ+
Sbjct: 26  KKSLGQNFLVDMNIMRRIVDAAEPDSVTGALEIGPGIGALTEQLVQQSG-QVAAVEIDQR 84

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFNW 137
             PIL ++   +PN + ++  D LKVD    F   F     + ++ANLPY + T +L   
Sbjct: 85  LIPILGEVLEPYPN-VRVVHGDVLKVDLGELFRDQFQAMDKVSVVANLPYYVTTPILMRL 143

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  +  P   +++ ++ QKEV ERI AQ  S  YG LSV   + ++  ++  + P VF P
Sbjct: 144 LE-ERLP--VKNIVVMIQKEVAERIAAQPGSKDYGSLSVAIQYFSEPQLVCIVPPSVFIP 200

Query: 198 SPKVTSTVIHF 208
            P V S VI  
Sbjct: 201 QPNVESAVIKL 211


>gi|309812813|ref|ZP_07706551.1| dimethyladenosine transferase [Dermacoccus sp. Ellin185]
 gi|308433230|gb|EFP57124.1| dimethyladenosine transferase [Dermacoccus sp. Ellin185]
          Length = 297

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 135/273 (49%), Gaps = 18/273 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +   + + P K  GQNF++D N ++KI   +G     TV+E+G G G+LT  LL
Sbjct: 20  AADIRELAERHGVRPTKTWGQNFVIDPNTVRKIVRLAGVGADDTVVEVGPGLGSLTLALL 79

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A  + V+E D     Q    ++  + QH ++L ++Q DA+ VD  +     +P  ++
Sbjct: 80  PAVA-HLSVVEVDPNLAAQLPATVERFAPQHASKLNVVQADAMTVDSLE----PAPTALV 134

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ N++      P  + + ++ Q EV +R+ A+  S  YG  SV   W  
Sbjct: 135 ANLPYNVSVPVVLNFLEHF---PSLQRVLVMVQLEVAQRLAAEPGSKVYGVPSVKAAWYA 191

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241
              +   +  +VF+P+P V S ++  +    P      + +      AF +RRKTLR +L
Sbjct: 192 DVRLADRVGRNVFWPAPNVDSGLVSLVRRDPPTTEATRAQVFACIDAAFAQRRKTLRAAL 251

Query: 242 KRLG-----GENLLHQAGIETNLRAENLSIEDF 269
                     E  L  AGI+   R E L I++F
Sbjct: 252 AGWAGGADRAEAALVAAGIDPRTRGERLGIDEF 284


>gi|313677281|ref|YP_004055277.1| dimethyladenosine transferase [Marivirga tractuosa DSM 4126]
 gi|312943979|gb|ADR23169.1| dimethyladenosine transferase [Marivirga tractuosa DSM 4126]
          Length = 260

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 12/263 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            KK++GQ+FL D NI +KI ES SG      ++EIG G G L+  L+     +++ ++ D
Sbjct: 6   AKKHLGQHFLKDQNIAQKIVESLSGHKKYQHLLEIGPGTGVLSNFLIDRAEYELLFMDVD 65

Query: 80  QQFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           Q+    L++   Q+P+  E II++D L++D   ++       II N PYNI +++ F  +
Sbjct: 66  QESVDYLQN---QYPDYKEKIIKEDFLRIDLGHYY--KEAFGIIGNFPYNISSQIFFKVL 120

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P    +  + QKEV ERI A++ S  YG LSVL     +   +F + P+VF P 
Sbjct: 121 EYRNQIP---EVVGMIQKEVAERIAAKEGSKTYGILSVLLQAFYEVEYLFSVPPNVFNPP 177

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKVTS V+    +      C E L  ++ ++ F  RRKTLR +LK     + +    +  
Sbjct: 178 PKVTSAVLRLKRNETQTLDCDEKLFFRVVKQGFNNRRKTLRNALKTFNLSDEIKSLDL-L 236

Query: 258 NLRAENLSIEDFCRITNILTDNQ 280
           + RAE L++ DF  +TN + + +
Sbjct: 237 DKRAEQLTVNDFVELTNHIANGE 259


>gi|255016922|ref|ZP_05289048.1| dimethyladenosine transferase [Listeria monocytogenes FSL F2-515]
          Length = 255

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 133/263 (50%), Gaps = 29/263 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           + +I +++       VIEIG G G LT+ L      +V+  E DQ+  PIL D  S + N
Sbjct: 1   MTRITDTAEITKETNVIEIGPGIGALTEQLAK-TTNEVVAFEIDQRLLPILDDTLSAY-N 58

Query: 96  RLEIIQDDALKVDFE-----KFFNISSPIRIIANLPYNIGT----RLLFNWISADTWPPF 146
            ++++  D LK D E     +F     P++I+ANLPY + T    +LL + I AD     
Sbjct: 59  NVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLPYYVTTPIILKLLHDNIPAD----- 113

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
             S+T + QKEV +RI+A  ++  YG L++   +  +A + F +   VF P P V S VI
Sbjct: 114 --SMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVI 171

Query: 207 HFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQ-------SLKRLGGENL--LHQAGI 255
           H      P+      E   ++T+ +F +RRKTL         +LK    E +  L+  GI
Sbjct: 172 HLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGI 231

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           +   R E L I +F +++N L D
Sbjct: 232 DLIRRGETLDIPEFAKLSNFLGD 254


>gi|46399670|emb|CAF23119.1| putative dimethyladenosine transferase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 256

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 137/263 (52%), Gaps = 21/263 (7%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           ++D NI++KI  +S    G  V+EIG GPG+LTQ +L + A  V+ +EKD   F + +++
Sbjct: 1   MIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAH-VVAVEKD---FVLAREL 56

Query: 90  SS-QHPNR-LEIIQDDALKVDFEKFFNISSPIR------IIANLPYNIGTRLLFNWISAD 141
              Q P++ LEI  +D L    E+   + S +R      +IANLPY++ T +L   +   
Sbjct: 57  KRFQTPSKQLEIFCEDILMFSVEE--ELQSRLRDDQKAKVIANLPYHLTTPILAEMVVRR 114

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                + SLT++ Q+EV  R+TA      Y   ++   + +K    F +S + F+P+PKV
Sbjct: 115 K---LFSSLTVMVQEEVARRMTALPGQSDYSSFTIFLNFYSKPRYGFTVSRNCFYPAPKV 171

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGIET 257
            S ++       P     +   KIT+ AF +RRK LR SLK L       N L   G   
Sbjct: 172 DSAIVVLELKEPPPNIDAQVFFKITRTAFEQRRKMLRASLKSLFDPSKISNALEIIGQNP 231

Query: 258 NLRAENLSIEDFCRITNILTDNQ 280
             R E LS+EDF ++ + L  ++
Sbjct: 232 QARPEVLSLEDFIKLYHELYSSE 254


>gi|282163396|ref|YP_003355781.1| probable dimethyladenosine transferase [Methanocella paludicola
           SANAE]
 gi|282155710|dbj|BAI60798.1| probable dimethyladenosine transferase [Methanocella paludicola
           SANAE]
          Length = 276

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 136/271 (50%), Gaps = 27/271 (9%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P K   Q+FL+DLNILKKI   +       V+EIG GPGNLT+ LL   AR V  IE 
Sbjct: 11  IAPDKRKDQHFLIDLNILKKIVAIADIHKDEDVLEIGTGPGNLTE-LLAQKARHVYTIEM 69

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     +L++      + + II+ +ALKV+F +F       +++ANLPY+I + + F  +
Sbjct: 70  DPALVALLEE--KFKGSNVTIIKGNALKVEFPRF------DKVVANLPYSISSDVTFKLL 121

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             +     ++   L++Q+E  +R+ A+   P Y RLSV         ++  + P  F P 
Sbjct: 122 KNN-----FKLGILMYQREFAQRMIARVGEPDYSRLSVDVQHFADVEILMKVPPQAFSPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           P+V S V+   P          +L   +   AF +RRK LR +L  + G +++   G++ 
Sbjct: 177 PEVESAVVRVTPRPAAYSVKDRALFMALVTAAFTQRRKRLRNAL--VNGAHIMGIHGMKA 234

Query: 258 ----------NLRAENLSIEDFCRITNILTD 278
                     + RAE +S E++  + + L +
Sbjct: 235 LVSRLPPDLMDKRAEEVSPEEYAALADRLYE 265


>gi|149927947|ref|ZP_01916197.1| dimethyladenosine transferase [Limnobacter sp. MED105]
 gi|149823386|gb|EDM82619.1| dimethyladenosine transferase [Limnobacter sp. MED105]
          Length = 256

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 126/259 (48%), Gaps = 13/259 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+FL D ++L  +          T++EIG G G LT  LL      + VIE D+ 
Sbjct: 6   KKRFGQHFLTDQSVLSNLIGEMRPRADDTLVEIGPGLGALTFWLLK-AVNHLQVIEIDRD 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               L+  +    ++L + + D LK DF +   + +P R++ NLPYNI + +LF  +  A
Sbjct: 65  LAEKLR--TGNWKDKLTVHEVDVLKFDFRQ---LPAPFRVVGNLPYNISSPILFALLEVA 119

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D           + QKEV +R+ A   +  YGRLSV+         +FD+ P  F P P+
Sbjct: 120 DQV----IDQHFMLQKEVIDRMVAAPKTSDYGRLSVMLQAYYDMDHLFDVPPECFDPPPR 175

Query: 201 VTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S ++  +P        +  E   ++   AF +RRK LR +   +  E++   AGI   
Sbjct: 176 VMSAIVRMVPKQAQERAAIPGEIFSRVVSTAFSQRRKMLRNTWANVVPEHIASAAGIALT 235

Query: 259 LRAENLSIEDFCRITNILT 277
            RAE ++ E F ++  +L 
Sbjct: 236 ARAEEIAPEQFVQVAQMLA 254


>gi|227327730|ref|ZP_03831754.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 164

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 94/159 (59%), Gaps = 5/159 (3%)

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+     T+      +  + QKEV  R+ A  NS  +GRLSV+  +  
Sbjct: 4   GNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSVMAQYYC 60

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQS 240
           +   + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF +RRKTLR S
Sbjct: 61  QIIPVLEVPPEAFKPAPKVDSAVVRLVPHAEIPYPVSDIRVLSRITTEAFNQRRKTLRNS 120

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L  L   ++L + GI+ + RAEN+++E +CR+ N L+++
Sbjct: 121 LGNLFTPDVLTELGIDVSSRAENVTVEQYCRLANWLSEH 159


>gi|320536299|ref|ZP_08036342.1| dimethyladenosine transferase [Treponema phagedenis F0421]
 gi|320146859|gb|EFW38432.1| dimethyladenosine transferase [Treponema phagedenis F0421]
          Length = 287

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 132/284 (46%), Gaps = 17/284 (5%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N   +L + L    +  +K  GQNFL+D N+ K + +S     G  + EIG G G +T +
Sbjct: 7   NSPSALASFLKERDLGMRKKFGQNFLIDENMRKFLIDSLELQGGERIWEIGPGLGAMTFL 66

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL          E D  F   L+    ++P    +I+ DALK  ++  F    P     N
Sbjct: 67  LLEKNVH-TTAFEIDSGFSDFLRKAYGENP-LFTLIEGDALKT-WKAAFEKEKPDCFFGN 123

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI  +L+ + I A+     ++ L +  QKEVG+R+ AQ NSP Y   SVL       
Sbjct: 124 LPYNIAAKLIADTIEAEA---IFDKLLVTVQKEVGDRMRAQPNSPDYSSFSVLCNRYYDV 180

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL-- 241
           T +  I    F+P P V S  +      + I C    L  ++ +  F  RRKTL+ +   
Sbjct: 181 TALRTIPSACFWPRPNVVSQALLLTKKTDLIDCKDNKLFFQLLRAFFSSRRKTLKNNFLA 240

Query: 242 --------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                     +  +    +A I+++ RAE L + DF ++ +ILT
Sbjct: 241 WQKSNPLYAAVDADTFFKKAEIDSSARAETLQVYDFLKLCDILT 284


>gi|197124132|ref|YP_002136083.1| dimethyladenosine transferase [Anaeromyxobacter sp. K]
 gi|220918912|ref|YP_002494216.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|226729750|sp|B4UDZ6|RSMA_ANASK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807855|sp|B8J7H0|RSMA_ANAD2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|196173981|gb|ACG74954.1| dimethyladenosine transferase [Anaeromyxobacter sp. K]
 gi|219956766|gb|ACL67150.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 284

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 29/293 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M +   S + +L  Y +  KK  GQNFL D  +L  IA  +    G  V+E+GAG G+LT
Sbjct: 1   MTDHYPSPRALLDRYDLRAKKSWGQNFLGDEAVLDDIARLAAPRAGDAVLELGAGLGHLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---- 118
             LL  GAR V  +E+D+    +L+    +  +R+ +++ DA ++D+             
Sbjct: 61  ARLLARGAR-VAAVERDRDMVRVLR---GELGDRITLLEADAARLDYADLAARFGAAAAA 116

Query: 119 -----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                + ++ NLPY++ + +LF+ +              L Q+EV ER+ A   S  +G 
Sbjct: 117 GEGPRLAVVGNLPYHLTSPILFSILDQVA---HVSRAVFLLQREVAERLAAPPASRDWGV 173

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFG 231
           LSVL       ++   + P  F+P PKV S V+   F P  + +       +++ +  FG
Sbjct: 174 LSVLLQREADVSVERIVPPGAFWPPPKVASAVLCALFRPPADAV-ADPARFRRLVKAGFG 232

Query: 232 KRRKTLRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +RRKTLR +L         RL  E     AG++   R E L++ ++  +   L
Sbjct: 233 QRRKTLRNALGSAKLADPARL--EAAFAAAGVDPGRRGETLTLAEWAALERTL 283


>gi|281420569|ref|ZP_06251568.1| dimethyladenosine transferase [Prevotella copri DSM 18205]
 gi|281405342|gb|EFB36022.1| dimethyladenosine transferase [Prevotella copri DSM 18205]
          Length = 270

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 132/265 (49%), Gaps = 25/265 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DLNI K+IA++  +   I V+EIG G G LTQ L+    R V  +E D 
Sbjct: 6   PKKNLGQHFLTDLNIAKRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPRVVKAVEIDS 64

Query: 81  QF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           +        FP LKD          II +D L++D  + F+      +  N PY+I +++
Sbjct: 65  ESVAYLHENFPTLKD---------NIIGEDFLRMDLNQIFD-GKQFVLTGNYPYDISSQI 114

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     T + Q+EV  R+ ++  +  YG LSVL         +F +  +
Sbjct: 115 FFKMLDYKDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLIQAWYDVEYLFTVDEN 171

Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           VF P PKV S VI    + +  + C  +  K++ +  F +RRK LR SLK++       +
Sbjct: 172 VFNPPPKVKSAVIRMTRNKVTDLGCDEKLFKRLVKTVFNQRRKMLRVSLKQMFPGVTPRE 231

Query: 253 AGIETNL---RAENLSIEDFCRITN 274
               T++   R E L+I+ F  +TN
Sbjct: 232 EFFTTDIMTKRPEQLTIQQFVELTN 256


>gi|254251454|ref|ZP_04944772.1| Dimethyladenosine transferase [Burkholderia dolosa AUO158]
 gi|124894063|gb|EAY67943.1| Dimethyladenosine transferase [Burkholderia dolosa AUO158]
          Length = 275

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 133/279 (47%), Gaps = 21/279 (7%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT+ L+     +V  
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLI----ERVAT 62

Query: 76  IEKDQQFFPILKDISSQHPNR----LEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126
            E       + +D+  +   R    LE+   DAL  DF    ++++P     +R++ NLP
Sbjct: 63  PESPLHAVELDRDLIGRLQQRFGALLELHAGDALAFDFR---SLAAPGDQPSLRVVGNLP 119

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     
Sbjct: 120 YNISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDK 176

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
           M D+ P  F P PKV S ++  IP+  + +P    + L ++   AF +RRK LR +L   
Sbjct: 177 MLDVPPESFQPPPKVDSAIVRMIPYERHELPDVDPALLGEVVTAAFSQRRKMLRNTLGDY 236

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            G       G +   RAE++S+ ++  I   L   + + 
Sbjct: 237 RGTIDFDALGFDLARRAEDVSVAEYVGIAQALAATRSVG 275


>gi|282853600|ref|ZP_06262937.1| dimethyladenosine transferase [Propionibacterium acnes J139]
 gi|282583053|gb|EFB88433.1| dimethyladenosine transferase [Propionibacterium acnes J139]
 gi|314922156|gb|EFS85987.1| dimethyladenosine transferase [Propionibacterium acnes HL001PA1]
 gi|314965239|gb|EFT09338.1| dimethyladenosine transferase [Propionibacterium acnes HL082PA2]
 gi|314982376|gb|EFT26469.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA3]
 gi|315092583|gb|EFT64559.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA4]
 gi|315093999|gb|EFT65975.1| dimethyladenosine transferase [Propionibacterium acnes HL060PA1]
 gi|315104569|gb|EFT76545.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA2]
 gi|327329529|gb|EGE71289.1| dimethyladenosine transferase [Propionibacterium acnes HL103PA1]
          Length = 298

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 138/285 (48%), Gaps = 24/285 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S++ I     + P K  GQNF+ D N +++I   +       VIE+G G G+LT  LL  
Sbjct: 11  SIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAADRVIEVGPGLGSLTLGLLET 70

Query: 69  GARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           GA +V+ IE D+     L D ++ + P    RLE++  DAL V   K    + P  ++AN
Sbjct: 71  GA-EVVAIEIDEVLANQLPDTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTALVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + ++     P W +  ++ Q EV +R+ A   S  YG  S    W  +A
Sbjct: 127 LPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWYAEA 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFI----PHL---NPIPCCLESLKKITQEAFGKRRKTL 237
           T + ++ P VF+P P V S ++       PH+   NP       + ++   AF  RRK L
Sbjct: 184 TRVGNVPPTVFWPVPNVDSGLVRITRRRSPHVDGRNP-RVTRSQVFRVVDAAFASRRKML 242

Query: 238 RQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           R +L  L G       L+  AGI+   R E L I D  R+   L 
Sbjct: 243 RSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVAEALA 287


>gi|119026633|ref|YP_910478.1| dimethyladenosine transferase [Bifidobacterium adolescentis ATCC
           15703]
 gi|166221647|sp|A1A3W3|RSMA_BIFAA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118766217|dbj|BAF40396.1| dimethyladenosine transferase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 303

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 31/304 (10%)

Query: 1   MTMNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV 51
           MT N   H+         ++ I +   I P K  GQNF++D   +++I   +G      V
Sbjct: 1   MTENVNEHTQGHLLGAADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHV 60

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN---RLEIIQDDALKV 107
           +E+G G G+LT  +L  GA  +  +E D      L K I+   P+   R  ++  DAL V
Sbjct: 61  LEVGPGLGSLTLAILETGA-TMTAVEIDPPVAERLPKTIAEFMPDAVDRFRVVNRDALTV 119

Query: 108 DFEKF--FNISSPIRIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITA 164
           + E    F       ++ANLPYN+ T +L   +   D    F     ++ QKEV +R++ 
Sbjct: 120 NPENLPDFKDDDSFTLVANLPYNVATPILLTLLERFDNLGTFL----VMVQKEVADRLSE 175

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLNPIPC 217
           +  S  YG  SV   W   A  +  I  +VF+P+P V S ++ F        P  +    
Sbjct: 176 KPGSKIYGTPSVKLAWYGTAERVGVIGRNVFWPAPNVDSALVLFKRYPGGHTPAADNADG 235

Query: 218 CL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +   E++ ++   AFG+RRKTL  +LK++       +AGI+   R E L+I++F  +  
Sbjct: 236 SVVDRETVFRLIDAAFGQRRKTLHAALKKIVPSEAFEKAGIDPTRRGETLTIDEFVALAR 295

Query: 275 ILTD 278
            L +
Sbjct: 296 ALDE 299


>gi|320527164|ref|ZP_08028351.1| dimethyladenosine transferase [Solobacterium moorei F0204]
 gi|320132492|gb|EFW25035.1| dimethyladenosine transferase [Solobacterium moorei F0204]
          Length = 280

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 137/276 (49%), Gaps = 18/276 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  + +  KK  GQNFL+D  I+++ AE S   +G  VIEIG G G+LT+ L  + A
Sbjct: 12  KEILDQFGLRAKKGFGQNFLVDPIIVERCAEMS-HCEG-AVIEIGPGIGSLTEQL-AMHA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLP 126
           + V+  E D+   P+L+     + N +EII  D L  D ++  +        + + ANLP
Sbjct: 69  QHVLAFEIDEGLIPVLQHTLEGYSN-VEIILQDFLMCDLDEVVHALKEKYGTVSVCANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T +LF         P    +T++ QKEVG+R  A+   P Y  LSV   +      
Sbjct: 128 YYITTPVLFKIFEN----PDISYITVMVQKEVGDRFVAKPKDPEYNALSVEGQYLFDIKR 183

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKR-- 243
           +F +    F PSP V S +I F    N      +    ++ +  F +RRKT+  +LK   
Sbjct: 184 LFTVPGRSFNPSPAVDSVIIQFARKDNDASNEEIRDFFELVRACFKQRRKTIYNNLKEYV 243

Query: 244 ---LGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              +    +L +A I  N RA+ L+I++  +I  ++
Sbjct: 244 DDGVKATEILEKANIPVNKRAQELTIDELKQIHEVM 279


>gi|296271121|ref|YP_003653753.1| dimethyladenosine transferase [Thermobispora bispora DSM 43833]
 gi|296093908|gb|ADG89860.1| dimethyladenosine transferase [Thermobispora bispora DSM 43833]
          Length = 288

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 130/264 (49%), Gaps = 16/264 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           P K +GQNF++D   L++I   +       V+E+G G G+LT  LL   A +V+ +E D 
Sbjct: 26  PTKRLGQNFVIDGGTLRRIVRLAQVTPEDVVLEVGPGLGSLTLALLPEAA-QVVAVEVDP 84

Query: 80  --QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              +  P+ + + + +   RL +++ DAL++  E      +P  ++ANLPYN+   +L +
Sbjct: 85  VLAERLPVTVAEYAPEVAGRLRVVRADALRIGPEDLG--VAPDALVANLPYNVAVPILLH 142

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
             +    P     L ++ Q EV +R+TAQ  S  YG  SV   W  +      +   VF+
Sbjct: 143 LFA--VLPSLRRGLVMV-QAEVADRLTAQPGSKLYGVPSVKIAWFAEVRRAGSVGRSVFW 199

Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLR-----QSLKRLGGENLL 250
           P P V S ++  +    P      E +  +   AF +RRKTLR      +    G E  L
Sbjct: 200 PVPNVDSGLVALVRRDPPKTTASREEVFAVVDAAFAQRRKTLRAALAPWAGGAAGAERAL 259

Query: 251 HQAGIETNLRAENLSIEDFCRITN 274
             AGI+ + R E L+IEDF RI  
Sbjct: 260 RDAGIDPSARGERLTIEDFARIAE 283


>gi|159036383|ref|YP_001535636.1| dimethyladenosine transferase [Salinispora arenicola CNS-205]
 gi|157915218|gb|ABV96645.1| dimethyladenosine transferase [Salinispora arenicola CNS-205]
          Length = 289

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 133/270 (49%), Gaps = 15/270 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N +++I  ++G      V+E+G G G+LT  LL + 
Sbjct: 10  IRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLASNDVVLEVGPGLGSLTLALLPVA 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L + + +H      RL + + DAL+V   +  +  +P  ++ANL
Sbjct: 70  A-HVHAVEIDPVLAAALPETAVRHAGPAAARLSVHRADALRVTAGQLAD-PAPTALVANL 127

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++    P     L ++ QKEV +R+ A   S  YG  SV   W  +  
Sbjct: 128 PYNVAVPVVLHLLA--ELPTLRHGL-VMVQKEVADRLVAGPGSRVYGVPSVKLAWYARVR 184

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
               + P+VF+P P V S ++ F     P      S +  +   AF +RRKTLR +L   
Sbjct: 185 AAGRVPPNVFWPVPNVDSGLVAFTRREPPGAGGSRSRVFAVVDAAFAQRRKTLRAALAGW 244

Query: 245 G-----GENLLHQAGIETNLRAENLSIEDF 269
                    +L  AG++   R E+L++E F
Sbjct: 245 AGGGDRAAAVLTAAGVDPGARGESLTVEQF 274


>gi|332705358|ref|ZP_08425436.1| dimethyladenosine transferase [Lyngbya majuscula 3L]
 gi|332355718|gb|EGJ35180.1| dimethyladenosine transferase [Lyngbya majuscula 3L]
          Length = 282

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 135/270 (50%), Gaps = 19/270 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K   Q++L     L +I  ++       ++EIG G G LTQ LL    + V+ +E D+ 
Sbjct: 6   RKKFAQHWLRSEEALNQIVTAANLQKSDRILEIGPGTGILTQRLLPF-VQSVVAVEIDRD 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLLFNW 137
              +L     +  N L ++Q D L +D +     F N   P +++AN+PYNI   +L   
Sbjct: 65  LCRLLVKKLGKIDNFL-LLQGDFLSLDLDTLLANFSNFQKPNKVVANIPYNITGPILEKL 123

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +   T P  P ++ + LL QKEV +R+ A+ +S  +G LSV   +  +  ++ D+    F
Sbjct: 124 LGTITQPAVPGFDLIVLLVQKEVAQRLYAKPSSRQFGALSVRVQYLAECELICDVPGSAF 183

Query: 196 FPSPKVTSTVIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248
            P PKV S V+   P L   P     CLE+L K+    FG +RK LR +LK +   +   
Sbjct: 184 SPPPKVDSAVVRLHPSLAEPPASDPRCLETLLKL---GFGSKRKMLRNNLKSVIERDRIT 240

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNILT 277
            LL Q  I    RAE+LS+  +  + N +T
Sbjct: 241 QLLEQLEISPQARAEDLSVAQWIALANQIT 270


>gi|313205524|ref|YP_004044701.1| dimethyladenosine transferase [Riemerella anatipestifer DSM 15868]
 gi|312444840|gb|ADQ81195.1| dimethyladenosine transferase [Riemerella anatipestifer DSM 15868]
 gi|315023396|gb|EFT36406.1| Dimethyladenosine transferase [Riemerella anatipestifer RA-YM]
 gi|325335044|gb|ADZ11318.1| Dimethyladenosine transferase (rRNA methylation) [Riemerella
           anatipestifer RA-GD]
          Length = 262

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/258 (36%), Positives = 129/258 (50%), Gaps = 19/258 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL D NI  KI E+        V+E+G G G LT+ LL   + ++ V E D +
Sbjct: 6   KKHLGQHFLNDENIASKIVEALEVDVQDFVLEVGPGMGVLTKYLLNKNS-EIFVAEIDVE 64

Query: 82  FFPILKDISSQHPNRLEI--IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               LK+    H  +LE      D LK +  + FN S  + +I N PYNI +++LF  I 
Sbjct: 65  SIAYLKE----HYPKLEEKHFVGDFLKANLTEIFN-SEQVSVIGNFPYNISSQILFKIID 119

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P    +  +FQKEV ER +A+  +  YG LSV+         +F +S +VF P P
Sbjct: 120 NYAQIP---EMVGMFQKEVAERTSAEPRTKSYGILSVMVQAYYDVKYLFTVSENVFTPPP 176

Query: 200 KVTSTVIHFIPHLNPIPCCLES----LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           KV S VI      NP    LE      K+I +  F +RRK L  +LK L     L     
Sbjct: 177 KVKSGVIRLTR--NP-KKGLEGNEVLFKQIVKAGFNQRRKKLSNALKGLNIPEALLTHNF 233

Query: 256 ETNLRAENLSIEDFCRIT 273
            T LRAE LS+EDF   T
Sbjct: 234 LT-LRAEELSVEDFIIFT 250


>gi|256374794|ref|YP_003098454.1| dimethyladenosine transferase [Actinosynnema mirum DSM 43827]
 gi|255919097|gb|ACU34608.1| dimethyladenosine transferase [Actinosynnema mirum DSM 43827]
          Length = 298

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 16/276 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N ++KI  ++       V+E+G G G+LT  LL   
Sbjct: 25  VRRLAAELDVRPTKKLGQNFVHDPNTVRKIVAAANLRPDDVVLEVGPGLGSLTLALLPAC 84

Query: 70  ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  ++ +E D      L   +++        L ++  DA++V   +  +  +P  ++ANL
Sbjct: 85  A-DLVAVEIDPVLAARLPTTAAERAPSLAANLSVVTADAMRVTAAQLPH--APTALVANL 141

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++     P   +  ++ Q EV +R+ A   S  YG  SV   W   A 
Sbjct: 142 PYNVAVPVVLHLLAEL---PSLRTGLVMVQSEVADRMAAGPGSKVYGVPSVKLAWYADAR 198

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRL 244
               +   VF+P P V S ++ F     P+     E L  +   AF +RRKTLR +L   
Sbjct: 199 RAGPVGRSVFWPVPNVDSALVGFTRRDAPLSDVPREVLFPLVDAAFAQRRKTLRAALSGW 258

Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
            G     E  L  AG++ + R E LS+ DF RI  +
Sbjct: 259 AGSAAEAERRLVAAGVDPSARGEQLSVADFVRIAEV 294


>gi|227548244|ref|ZP_03978293.1| dimethyladenosine transferase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079667|gb|EEI17630.1| dimethyladenosine transferase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 284

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 137/271 (50%), Gaps = 17/271 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           + S   + P K +GQNF+ D N +++I  ++       V+E+G G G+LT  L+      
Sbjct: 15  LASELGVTPTKKLGQNFVHDPNTVRRIVAAAKLNADDVVVEVGPGLGSLTLGLVD-SVSH 73

Query: 73  VIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNIS-SPIRIIANLPY 127
           V+ +E D +    L     +  +    RLE++  DAL+V   +  ++S +P  ++ANLPY
Sbjct: 74  VVALEIDPRLAGRLARTVEERADAFATRLEVVCADALRV---RRSDVSHAPTALVANLPY 130

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+   +L + +  + +P     L ++ QKEV +R+ A+  S  YG  SV   +  + T  
Sbjct: 131 NVSVPVLLHLL--EEFPTIRRVLVMV-QKEVADRLAAEPGSKIYGVPSVKAAFYGRVTRA 187

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
             I  +VF+P+P + S ++              S+  +   AF +RRKTLR +L  + G 
Sbjct: 188 GTIGKNVFWPAPNIESGLVRIDVDPKVDRTLRASVFPLVDAAFAQRRKTLRSTLAGVYGS 247

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRIT 273
               E  L  AGI+  LR E LS++DF R+ 
Sbjct: 248 PVAAEQALVAAGIDPGLRGEKLSVDDFVRLA 278


>gi|323524760|ref|YP_004226913.1| dimethyladenosine transferase [Burkholderia sp. CCGE1001]
 gi|323381762|gb|ADX53853.1| dimethyladenosine transferase [Burkholderia sp. CCGE1001]
          Length = 276

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 19/272 (6%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H   I +K  GQNFL+DL ++  I +      G  ++EIG G G LT+ L   L      
Sbjct: 11  HQGHIARKRFGQNFLVDLGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 70

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+     LK+   +  + LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 71  LHAVELDRDLIGRLKN---KFGDLLELHAGDALAFDFG---SLAAPGDAPSLRIVGNLPY 124

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI + LLF+     T+         + Q EV ER+ A+  +  + RLSV+  +R      
Sbjct: 125 NISSPLLFHLA---TFAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQ 181

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P PKV S ++  IP+      P     L ++   AF +RRK LR +L  L 
Sbjct: 182 LDVPPEAFQPPPKVDSAIVRMIPYAPHELAPVDERVLGEVVTAAFSQRRKMLRNTLAALR 241

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                   G +   RAE++ + ++ R+  ++ 
Sbjct: 242 DTVDFDAIGFDLQRRAEDVPVAEYVRVAQLVA 273


>gi|225352355|ref|ZP_03743378.1| hypothetical protein BIFPSEUDO_03972 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156862|gb|EEG70231.1| hypothetical protein BIFPSEUDO_03972 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 309

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 22/284 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 22  AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHVLEVGPGLGSLTLAIL 81

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D    ++    + +      +R  ++  DAL V  E    F       
Sbjct: 82  ETGA-TMTAVEIDPPVAERLPGTIAEFMPDAVDRFRVVNRDALTVTPENLPDFQNDDSFT 140

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D    F     ++ QKEV +R++ +  S  YG  SV   
Sbjct: 141 LVANLPYNVATPILLTLLERFDNLGTFL----VMVQKEVADRLSEKPGSKIYGTPSVKLA 196

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLN-PIPCCL--ESLKKITQEA 229
           W   A  +  I  +VF+P+P V S ++ F        P  N P    +  E++ ++   A
Sbjct: 197 WYGTAERVGIIGRNVFWPAPNVDSALVLFKRYEGGHTPSANNPDGSVVDRENVFRLIDAA 256

Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
           FG+RRKTL  +LK++       QAGI+   R E L+I++F  + 
Sbjct: 257 FGQRRKTLHAALKKIVPSEAFEQAGIDPTRRGETLAIDEFVALA 300


>gi|171920785|ref|ZP_02931975.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|185178813|ref|ZP_02964605.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024415|ref|ZP_02997074.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518431|ref|ZP_03003922.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188524212|ref|ZP_03004272.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195867442|ref|ZP_03079446.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273367|ref|ZP_03205903.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554601|ref|YP_002285056.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225550876|ref|ZP_03771825.1| conserved domain protein [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225551296|ref|ZP_03772242.1| conserved domain protein [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|226732636|sp|B5ZCB6|RSMA_UREU1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|171903544|gb|EDT49833.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|184209443|gb|EDU06486.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018700|gb|EDU56740.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998093|gb|EDU67190.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660052|gb|EDX53432.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660918|gb|EDX54171.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249887|gb|EDY74667.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209542102|gb|ACI60331.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225379111|gb|EEH01476.1| conserved domain protein [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|225380030|gb|EEH02392.1| conserved domain protein [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 281

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 17/278 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K  L     +P K MGQNFLL   I  KI   +       ++EIG G G +T++L+   
Sbjct: 6   IKNKLKQESFVPSKKMGQNFLLSNEIKNKIVNVANISKDDLILEIGPGWGAITELLVQ-K 64

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------NISSPIRIIA 123
              ++ IE D++ +  LK    + PN   II +D L VD +K          +  I+++A
Sbjct: 65  TDTLVAIELDKRLYAHLK-TYIKAPN-FHIINNDVLCVDLDKLILDYTNTKKNQKIKVVA 122

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I ++++   I +      +    ++ QKE+ ERI A+ N+  Y   +VL     K
Sbjct: 123 NLPYAISSKIVLKIIQSKLINDAY----IMVQKEMAERIGAKVNTRGYNAFTVLVQLFCK 178

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             ++F ++   F P PKV S VIH     N +   +E + K  +  F  +RK L+ +L  
Sbjct: 179 TKILFQVNAKEFHPQPKVQSAVIHLENLHNKVDFDIEQVSKFLRICFLNKRKKLKNNLSN 238

Query: 244 LGGENLLHQA----GIETNLRAENLSIEDFCRITNILT 277
           +    L+++      ++ NLRAEN+  + F  + N L 
Sbjct: 239 IYDIKLVNEMFIDYNLDMNLRAENIEPKMFLELFNYLN 276


>gi|91781824|ref|YP_557030.1| dimethyladenosine transferase [Burkholderia xenovorans LB400]
 gi|118600850|sp|Q145L1|RSMA_BURXL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91685778|gb|ABE28978.1| dimethyladenosine transferase [Burkholderia xenovorans LB400]
          Length = 277

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 25/278 (8%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H   I +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L   L      
Sbjct: 11  HQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 70

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+     LK   ++  + LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 71  LHAVELDRDLIGRLK---TKFGDLLELHAGDALAFDFG---SLAAPGDKASLRIVGNLPY 124

Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           NI + LLF+  +      F   +     + Q EV ER+ A+  +  + RLSV+  +R   
Sbjct: 125 NISSPLLFHLTA------FAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVI 178

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLK 242
               D+ P  F P PKV S ++  IP+ L+ +P   E  L ++   AF +RRK LR +L 
Sbjct: 179 DKQLDVPPEAFNPPPKVDSAIVRMIPYELHELPPVDERVLGELVTAAFSQRRKMLRNTLA 238

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                      G +   RAE++ + ++ R+  I+  ++
Sbjct: 239 AYRDSVDFEGLGFDLQRRAEDVPVAEYVRVAQIVAASK 276


>gi|260591378|ref|ZP_05856836.1| dimethyladenosine transferase [Prevotella veroralis F0319]
 gi|260536744|gb|EEX19361.1| dimethyladenosine transferase [Prevotella veroralis F0319]
          Length = 278

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 132/264 (50%), Gaps = 13/264 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DL+I K+IA++  +   I V+EIG G G LTQ L+    R V  +E D 
Sbjct: 17  PKKNLGQHFLTDLSIAKRIADTVDACPEIPVLEIGPGMGVLTQYLVE-KPRVVKAVEIDA 75

Query: 81  QFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    L +     H N   I+ +D L++D  + F+      +  N PY+I +++ F  + 
Sbjct: 76  ESVAYLYERFPKLHEN---ILGEDFLQMDLTQIFD-GKQFVLTGNYPYDISSQIFFKMLD 131

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     T + Q+EV  R+ A   S  YG LSVL         +F +  +VF P P
Sbjct: 132 YKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLIQAWYDVEYLFTVDENVFNPPP 188

Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S VI    + +  I C  +  K++ +  F +RRK LR SL+++           E +
Sbjct: 189 KVKSAVIRMTRNDVTDIGCNEQLFKRVVKTVFNQRRKMLRVSLRQIFNNGKPTDGFYEQD 248

Query: 259 L---RAENLSIEDFCRITNILTDN 279
           +   R E LSI  F ++TN++ + 
Sbjct: 249 IMTKRPEQLSIPQFVKLTNMVEEQ 272


>gi|284038180|ref|YP_003388110.1| dimethyladenosine transferase [Spirosoma linguale DSM 74]
 gi|283817473|gb|ADB39311.1| dimethyladenosine transferase [Spirosoma linguale DSM 74]
          Length = 271

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 136/275 (49%), Gaps = 19/275 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAE---SSGSLDGI---TVIEIGAGPGNLTQMLLTLGARK 72
           + PKK +GQ+FL DL+I ++IAE        DG+    V+EIG G G LTQ LL      
Sbjct: 3   VKPKKELGQHFLKDLSIAQRIAELLTGHAGADGVPYTKVLEIGPGTGVLTQFLLQNSQFD 62

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYN 128
             VIE D++    LK        R  I+  D L +  +    K  + + P  +I N PYN
Sbjct: 63  TYVIEIDRESVEYLKQYVPALEGR--ILASDFLNIRPDLLPTKQPDNTEPFAVIGNFPYN 120

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T++LF  +      P    +  +FQ+EV +R+ +   +  YG LSVL          F
Sbjct: 121 ISTQILFKVLDMRDRVP---EVVGMFQREVAQRVASGPGNKDYGILSVLLQAWYDIKYEF 177

Query: 189 DISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-G 246
            + P VF P PKV S VI    + +  + C ++   ++ +  F +RRKTLR +LK L   
Sbjct: 178 TVDPSVFNPPPKVFSGVISLKRNAVTDLGCDVKKFTQVVKHGFSQRRKTLRNALKPLSPS 237

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           E  L    ++   RAE L + +F  +T ++++  +
Sbjct: 238 EAALASPFMDK--RAEQLGVAEFVALTILMSERAE 270


>gi|300864419|ref|ZP_07109290.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506]
 gi|300337563|emb|CBN54438.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506]
          Length = 281

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 30/273 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L +I +++  L    V+EIG G G LT+ LL   A+ V+ +E D+
Sbjct: 6   PRKRFAQHWLKSEKALNQIVKAA-DLSQDRVLEIGPGTGILTRSLLP-AAQSVVAVEIDR 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRL--- 133
                L     +  N L ++Q D L +D E+    F    +P +++AN+PYNI   +   
Sbjct: 64  DLCEKLAKQLGKVDNFL-LVQGDILAMDLEEQLAAFPKFQNPNKVVANIPYNITGPIIEK 122

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   ISA    PF + + LL QKEV ER+ A+  S  +G LSV   +  +  ++ D+   
Sbjct: 123 LLGKISAPAAKPF-DLIVLLVQKEVAERLYAKPGSRAFGALSVRVQYLAECELICDVPAK 181

Query: 194 VFFPSPKVTSTVIHFIPHL------NPIPCCLESLKKITQEAFGKRRKTLRQSLK----- 242
            F+P PKV S V+   P +      NP+   LESL K+    FG +RK LR +LK     
Sbjct: 182 AFYPPPKVDSAVVRLRPRMVEPQAINPV--HLESLIKL---GFGSKRKMLRNNLKGTIEL 236

Query: 243 -RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            RL    LL +  I    RAE+LS+ ++  + N
Sbjct: 237 ERLA--QLLEKLQINPQCRAEDLSVAEWVALAN 267


>gi|261367577|ref|ZP_05980460.1| dimethyladenosine transferase [Subdoligranulum variabile DSM 15176]
 gi|282570364|gb|EFB75899.1| dimethyladenosine transferase [Subdoligranulum variabile DSM 15176]
          Length = 287

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 143/285 (50%), Gaps = 20/285 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ + + Y     K  GQNF+++  I  +IAE++G   G  V+EIG G G LT+ L   
Sbjct: 9   TIRDLCARYDFALSKGFGQNFIINPGICPRIAEAAGIGPGWGVLEIGPGIGVLTEQLCKR 68

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANL 125
            A KV+ +E D++  P+L +  + + N  +++  D LKVD +        + P+ + ANL
Sbjct: 69  -ADKVVSVEVDKRLPPLLAETMAGYDN-FKLVLQDVLKVDLKALLEEEFGTKPVAVCANL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + +L   +  +  P   +++T++ Q+E  +R+ A   +   G +S    +  +  
Sbjct: 127 PYYITSPILMRLLE-EKLP--IQNITVMVQREAAQRLCAAPGTREAGAISYAVAYYAQPK 183

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK-----ITQEAFGKRRKT---- 236
           ++F + P  F+P+P VTS VI       P P  L   ++     + + AF +RRKT    
Sbjct: 184 LLFTVQPGSFYPAPSVTSAVIRLDVRQQP-PVDLPDGREKAYFALIRAAFSQRRKTAANA 242

Query: 237 LRQSLKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +   LK    + L  L  AG+E   R E L++  +  +   L ++
Sbjct: 243 IANGLKLPKAQVLEALRTAGLEERARPEQLTLRAYAALLTALHED 287


>gi|302338023|ref|YP_003803229.1| dimethyladenosine transferase [Spirochaeta smaragdinae DSM 11293]
 gi|301635208|gb|ADK80635.1| dimethyladenosine transferase [Spirochaeta smaragdinae DSM 11293]
          Length = 293

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 128/281 (45%), Gaps = 18/281 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           SL   L    +  +K  GQNFL+   +  KI +         V EIG G G +T M+L L
Sbjct: 13  SLAAFLEARGLSMQKRFGQNFLVSPGVRSKIVKLLELSKDDHVWEIGPGLGAMTHMVLGL 72

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
             R + V E D+ F   L++  S      E+++ D +K     +   + P  I  NLPYN
Sbjct: 73  -CRNITVFEIDRGFISFLREHFSMVEG-FELVEGDVMKNWQPAYTRFAPPSLIFGNLPYN 130

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
                + + I A   P     +    QKEV ER++A   +  YG  S++  +     +  
Sbjct: 131 CAASFIGDLIEAGANP---RKMVFTIQKEVAERMSASPGTKRYGAFSMICAFSWDVRIAG 187

Query: 189 DISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLK---- 242
            I P  FFP P+VTS +I  +PH   + +   L S     ++ F  RRKT+R SL     
Sbjct: 188 IIKPGSFFPVPEVTSAIIEMVPHHRFSGLSAGLAS--TFAKDLFANRRKTVRNSLSGGIL 245

Query: 243 --RLGGENLLH---QAGIETNLRAENLSIEDFCRITNILTD 278
             RLG   +L+   +AGI    R E +S+E   +    LTD
Sbjct: 246 AARLGKNAILNAAEEAGIGLGQRGEEVSVEMVAKACGHLTD 286


>gi|311747369|ref|ZP_07721154.1| dimethyladenosine transferase [Algoriphagus sp. PR1]
 gi|126579087|gb|EAZ83251.1| dimethyladenosine transferase [Algoriphagus sp. PR1]
          Length = 261

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 13/259 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVI 76
           K+  KK++GQ+FL DL+I ++IA +     G+  V+EIG G G LT  LL     ++ +I
Sbjct: 3   KVRAKKHLGQHFLTDLSIAERIALAVKGHGGVKKVLEIGPGMGVLTDYLLK-NPLELYLI 61

Query: 77  EKDQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           + D++    L   + ++P+ +  II+ D LK +     +IS P  I  N PYNI +++ F
Sbjct: 62  DIDKESIAYL---NKKYPSLKDRIIEGDYLKYNLSN--DISEPYAIAGNFPYNISSQIFF 116

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +           +  + QKEV +RI + K +  YG LSVL         +F + P VF
Sbjct: 117 KVLEERDK---VTEVVCMLQKEVAKRIASPKGNKDYGILSVLLQAFYDIEYLFSVPPEVF 173

Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            P PKV S VI  + + +  + C  +   ++ +  FG RRKTLR SLK       L +  
Sbjct: 174 DPPPKVNSGVIRLVRNEVKSLDCNEKLFFQVVKGGFGNRRKTLRNSLKSFQLPEQLKEHP 233

Query: 255 IETNLRAENLSIEDFCRIT 273
           +  + RAE L + DF  I 
Sbjct: 234 L-MDKRAEQLDVADFVFIA 251


>gi|303236809|ref|ZP_07323388.1| dimethyladenosine transferase [Prevotella disiens FB035-09AN]
 gi|302482977|gb|EFL45993.1| dimethyladenosine transferase [Prevotella disiens FB035-09AN]
          Length = 266

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 132/261 (50%), Gaps = 14/261 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DLNI K+IA++      I V+EIG G G LTQ L+    R+V  +E D 
Sbjct: 6   PKKNLGQHFLTDLNIAKRIADTVDECPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEIDA 64

Query: 81  QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    L +   + P  R  I+ +D L++  E  F       +  N PY+I +++ F  + 
Sbjct: 65  ESVAYLNE---KFPTLRENILGEDFLRMQLENVFE-GRKFVLTGNYPYDISSQIFFKMLD 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     T + Q+EV  R+ AQ  +  YG LSVL         +F +  +VF P P
Sbjct: 121 YKDLIP---CCTGMIQREVALRMAAQPGNKTYGILSVLMQAWYNVEYLFTVDENVFNPPP 177

Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAGI 255
           KV S VI    + +  + C  +  K++ +  F +RRK LR SL+++         ++  I
Sbjct: 178 KVKSAVISLTRNDVTELGCDEKLFKRVVKTVFNQRRKMLRVSLRQIFTTKPREGFYEQDI 237

Query: 256 ETNLRAENLSIEDFCRITNIL 276
            T  R E L+I  F ++TN++
Sbjct: 238 MTK-RPEQLTIAQFVKLTNMV 257


>gi|291455675|ref|ZP_06595065.1| dimethyladenosine transferase [Bifidobacterium breve DSM 20213]
 gi|291382603|gb|EFE90121.1| dimethyladenosine transferase [Bifidobacterium breve DSM 20213]
          Length = 309

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 134/282 (47%), Gaps = 21/282 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREADVTTNDHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKV--DFEKFFNISSPIR 120
             GA  +  +E D    ++    + +   +  +RL ++  DAL V  D    FN  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPRTVAEFMPEAADRLTVVNRDALTVTPDNVPDFNGDTSFT 132

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D+   F     ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 133 LVANLPYNVATPILLTLLERFDSLGSFL----VMVQKEVADRLAAKPGSKIYGTPSVKLA 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFI---------PHLNPIPCCLESLKKITQEAF 230
           W   A  +  I  +VF+P+P V S ++ F          P         E + ++   AF
Sbjct: 189 WYGTAERVGTIGRNVFWPAPNVDSALVKFTRYAADDTQAPSHGKSSADRELVFRLIDAAF 248

Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272
           G+RRKTL  +LK +        AGI+   R E L++ +F  +
Sbjct: 249 GQRRKTLHAALKTIVPAEAFAAAGIDPTRRGETLTVTEFAAL 290


>gi|317052466|ref|YP_004113582.1| dimethyladenosine transferase [Desulfurispirillum indicum S5]
 gi|316947550|gb|ADU67026.1| dimethyladenosine transferase [Desulfurispirillum indicum S5]
          Length = 270

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 145/276 (52%), Gaps = 15/276 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ IL+ + ++ KK +GQNF+ D + +++I + SG     TV+EIG G G +T++L    
Sbjct: 3   VRQILNTHGLMAKKSLGQNFICDESFVQRIVKQSGVGPDDTVLEIGPGLGVMTRVLGERS 62

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR VI +E D Q    L+  S+  P  + ++  DAL+ D+     + +  R+IANLPYNI
Sbjct: 63  AR-VIALEIDGQLLDYLRS-SAHLPENVTLVHTDALRYDWG---TLPAECRVIANLPYNI 117

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV-LTGWRTKATMMF 188
            +++L   +         +S +++ Q+E+  R   +  +  +G L++ L  +      + 
Sbjct: 118 SSQILMAIVEHHQ---LVQSFSVMLQREMALRAMGESGTKDFGPLAIYLRLYYDLELSIS 174

Query: 189 DISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            I P VF+P+P V S+V+    +P            +K+ + +F  RRKTL+ + +    
Sbjct: 175 RIPPSVFYPAPGVESSVLQGRRLPQPRFPVGDFVRFQKLVRLSFSHRRKTLKNNYRGTTW 234

Query: 247 -ENLLHQA---GIETNLRAENLSIEDFCRITNILTD 278
            E  + QA   GI   LRAE LS+E F  +  +L D
Sbjct: 235 FETFMDQAPALGISPELRAEALSLEQFYLLYRLLED 270


>gi|288559416|ref|YP_003422902.1| dimethyladenosine transferase KsgA [Methanobrevibacter ruminantium
           M1]
 gi|288542126|gb|ADC46010.1| dimethyladenosine transferase KsgA [Methanobrevibacter ruminantium
           M1]
          Length = 298

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 109/201 (54%), Gaps = 13/201 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL    I   K +GQN+L+D    KKI   +      TV+EIG G G LT + L   A
Sbjct: 12  KRILQENDIKLNKNLGQNYLIDDFKRKKIINYANLTKEDTVLEIGPGIGTLT-IELAKRA 70

Query: 71  RKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +KVI IE+D+  F ILK  +  +  N +E+I  DA+KVDF +F       +I++NLPY I
Sbjct: 71  KKVIAIEQDETIFNILKKRLEKEKINNVELINGDAVKVDFPEFN------KIVSNLPYQI 124

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F +++ D     ++   L++QKE  +R+  +  +  Y RLS +  ++     +  
Sbjct: 125 SSPISFKFLNHD-----FDLAILMYQKEFADRMNGKVGTKQYSRLSAMLYFKADVKFLTK 179

Query: 190 ISPHVFFPSPKVTSTVIHFIP 210
           +SP  F PSPKV S VI   P
Sbjct: 180 VSPESFIPSPKVDSAVIQLKP 200


>gi|325518852|gb|EGC98422.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Burkholderia sp. TJI49]
          Length = 275

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 133/277 (48%), Gaps = 29/277 (10%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L   L      
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVSTIGPARGQRMVEIGPGLGALTEPLIERLATPESP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+    ++  ++ +    LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 67  LHAVELDRD---LIARLTQRFGALLELHAGDALAFDFR---SLAAPGDAPSLRIVGNLPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M
Sbjct: 121 NISSPLLFHLM---TFADVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDKM 177

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
            D+ P  F P PKV S ++  IP+       ++P+      L ++   AF +RRK LR +
Sbjct: 178 LDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPV-----LLGELVTAAFSQRRKMLRNT 232

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L            G +   RAE++S+ ++  +T  L 
Sbjct: 233 LGDYRDAIDFDALGFDLARRAEDVSVAEYVGVTQALA 269


>gi|260060929|ref|YP_003194009.1| dimethyladenosine transferase [Robiginitalea biformata HTCC2501]
 gi|88785061|gb|EAR16230.1| dimethyladenosine transferase [Robiginitalea biformata HTCC2501]
          Length = 321

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 128/266 (48%), Gaps = 14/266 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD-- 79
           KK++GQ+FL D ++  +IA +        ++EIG G G LT  LL      ++ +E D  
Sbjct: 60  KKHLGQHFLTDASVAMRIAGTLSPDGPPRILEIGPGTGVLTAFLLRRPV-DLLAVELDGE 118

Query: 80  -----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
                ++ FP+     +      E++  D LK+D    F    P  +  N PYNI T+++
Sbjct: 119 SVKYLREVFPLELASETTSYKSFEVLHGDFLKLDLPGLFG-GKPFAVTGNFPYNISTQIV 177

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +      P     + +FQ+EV ERI A   S  YG LSVL      A   F + P V
Sbjct: 178 FRVLENRERIP---EFSGMFQREVAERICAGPGSKTYGILSVLVQAYYLAEYRFTVPPEV 234

Query: 195 FFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F P PKV S V+H     +       + L ++ + AF +RRKTLR SLK L   + L + 
Sbjct: 235 FDPPPKVESGVLHLRYRTDTRADWDYQHLTRLVKTAFNQRRKTLRNSLKSLPVPDYLKED 294

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
            I  + R E L + +F  ++  + D+
Sbjct: 295 AI-FDRRPEQLEVREFIALSKRIWDD 319


>gi|113474554|ref|YP_720615.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101]
 gi|110165602|gb|ABG50142.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101]
          Length = 281

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 135/269 (50%), Gaps = 13/269 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P+K   Q++LL    L KI +++   +   ++EIG G G LT  LL L A  V+ +E 
Sbjct: 3   IQPRKRFAQHWLLSDKALNKIIQAAELSESDRILEIGPGTGVLTHRLLPLAA-SVVAVEI 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLL 134
           D+     L     +  N L ++Q D L +D E    +F    +P +++AN+PYNI   +L
Sbjct: 62  DRDLCQKLVKKFGRVKNFL-LLQGDILSLDLETNLAQFIGFQNPHKVVANIPYNITGLIL 120

Query: 135 FNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
              +   + P    ++ + LL QKEV +RI A+ +S  Y  LSV   +  K   + D+  
Sbjct: 121 EKLLGTISQPLTNTYDLIVLLLQKEVADRICAKPDSKAYSSLSVKIQYLAKCEFICDVPA 180

Query: 193 HVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248
             F+P PKV S VI   P L  P     + ++ + +  F  +RK LR +LK +   +   
Sbjct: 181 KAFYPPPKVDSAVIRLRPQLIEPQANNPKQMEMLVKLGFASKRKMLRNNLKAVVERDRLF 240

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276
            LL    +    RAE+L+++++  + N L
Sbjct: 241 ELLENLKVNPQSRAEDLTVQEWVTLANSL 269


>gi|288800845|ref|ZP_06406302.1| dimethyladenosine transferase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332306|gb|EFC70787.1| dimethyladenosine transferase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 279

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 138/275 (50%), Gaps = 19/275 (6%)

Query: 13  ILSHYK------IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  HYK      + PKK +GQ+FL+D +I ++IA++  +   I V+EIG G G LTQ ++
Sbjct: 3   LCKHYKYGMIKQVKPKKNLGQHFLIDQSIARRIADTVDACPDIPVLEIGPGMGVLTQYIV 62

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               R    +E D++    L +     P  R  II +D L++D    F+  S + +  N 
Sbjct: 63  Q-KQRPFKAVEIDRESVTYLNE---AFPTLRENIIGNDFLQMDLNDVFDGKSFV-LTGNY 117

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY+I +++ F  +      P     T + Q+EV  RI ++  +  YG LSVL        
Sbjct: 118 PYDISSQIFFKMLDYKELIP---CCTGMIQREVALRIASEPGNKSYGILSVLIQAWYDVE 174

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            +F +  +VF P PKV S VI    + +  + C  +  K++ +  F +RRK LR SLK++
Sbjct: 175 YLFTVDENVFNPPPKVKSAVIRMTRNKVEKLDCDEQLFKRVVKTVFNQRRKMLRVSLKQI 234

Query: 245 GGENLLHQAGIETNL---RAENLSIEDFCRITNIL 276
              +    A  E  +   R E LS+  F  +TN++
Sbjct: 235 FNVSAARPAFYEQEIMTKRPEQLSVAQFVELTNLV 269


>gi|187922684|ref|YP_001894326.1| dimethyladenosine transferase [Burkholderia phytofirmans PsJN]
 gi|226729766|sp|B2SX63|RSMA_BURPP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|187713878|gb|ACD15102.1| dimethyladenosine transferase [Burkholderia phytofirmans PsJN]
          Length = 276

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 25/275 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H   I +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L   L      
Sbjct: 11  HQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 70

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+     LK   ++    LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 71  LHAVELDRDLIGRLK---TKFGGLLELHAGDALAFDFG---SLAAPGEKASLRIVGNLPY 124

Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           NI + LLF+  S      F   +     + Q EV ER+ A+  +  + RLSV+  +R   
Sbjct: 125 NISSPLLFHLTS------FAHRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVI 178

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPI-PCCLESLKKITQEAFGKRRKTLRQSLK 242
               D+ P  F P PKV S ++  IP+ L+ + P     L ++   AF +RRK LR +L 
Sbjct: 179 DKQLDVPPEAFNPPPKVDSAIVRMIPYELHELAPVDERVLGEVVTAAFSQRRKMLRNTLA 238

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                      G +   RAE++ ++++ R+  I+ 
Sbjct: 239 AYRDSVDFEALGFDLQRRAEDVPVDEYVRVAQIVA 273


>gi|328954956|ref|YP_004372289.1| dimethyladenosine transferase [Coriobacterium glomerans PW2]
 gi|328455280|gb|AEB06474.1| dimethyladenosine transferase [Coriobacterium glomerans PW2]
          Length = 313

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 140/291 (48%), Gaps = 35/291 (12%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           + + +L  + +  K  +GQ+FL+D +++++I   +       V+E+G G G LT  LL  
Sbjct: 11  ATRELLDEFGLTTKHRLGQHFLIDDHVVERIVRLAELDANARVVEVGPGIGTLTLALLPR 70

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLP 126
            AR V+ IE D    P+L    + HP+ L  I  DAL+V F      +  +P  ++ANLP
Sbjct: 71  VAR-VVAIEMDPALEPVLAMHVADHPD-LSYIIGDALRVGFRAIAAEAGGAPTMLVANLP 128

Query: 127 YNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           YN    ++ +++   D+     ES  ++ QKEV +RI AQ  +  YG  +       + T
Sbjct: 129 YNAAATIILDYLEHMDSL----ESAVVMVQKEVADRIAAQPGTKSYGAYTAKLRLIGELT 184

Query: 186 MMFDISPHVFFPSPKVTSTVIHFI------PHLNPIPCCLES------------LKKITQ 227
             F++S   F P P+V S+V+           L P   CL              +  +  
Sbjct: 185 DRFEVSRLSFMPPPRVESSVVRIERAHRAGERLGP---CLAGASAGTGAVAPAQVASVID 241

Query: 228 EAFGKRRKTLRQSLKRLG-GENLLHQA----GIETNLRAENLSIEDFCRIT 273
            AF +RRKT+R S+   G    +L +A     I  ++RAE L  +DF R+T
Sbjct: 242 AAFAQRRKTIRNSMTARGFDREMLDEALGASRIAPSIRAEALDTDDFIRLT 292


>gi|116004017|ref|NP_001070364.1| mitochondrial dimethyladenosine transferase 1 isoform 2 [Bos
           taurus]
 gi|83638584|gb|AAI09842.1| Transcription factor B1, mitochondrial [Bos taurus]
 gi|296483883|gb|DAA25998.1| mitochondrial dimethyladenosine transferase 1 isoform 2 [Bos
           taurus]
          Length = 226

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 14/206 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +L  
Sbjct: 17  TIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNA 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------SPI 119
           G  +++V+EKD +F P L+ +S   P +L I+  D L    E+ F  S           +
Sbjct: 77  GVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNV 136

Query: 120 RIIANLPYNIGTRLLFNWIS--ADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRL 174
            II NLP+++ T L+  W+   +    PF    T   L FQKEV ER+TA   S    RL
Sbjct: 137 HIIGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTRMMLTFQKEVAERLTATTGSKQRSRL 196

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPK 200
           S++  +      +  I    F P P+
Sbjct: 197 SIMAQYLCDVQHILTIPGQAFVPKPE 222


>gi|300870168|ref|YP_003785039.1| putative dimethyladenosine transferase [Brachyspira pilosicoli
           95/1000]
 gi|300687867|gb|ADK30538.1| putative dimethyladenosine transferase [Brachyspira pilosicoli
           95/1000]
          Length = 283

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 18/270 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           I P K  GQNFL D NI   IA +     L G   IEIG G G+L+ +L+ +    + ++
Sbjct: 20  IFPNKNRGQNFLCDRNIAYNIANTVPKDILRGDYAIEIGGGLGSLSNVLVDIYKNNLTIV 79

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D   +  LK+        + II +D LKV+     + +    +  N+PYNI + ++  
Sbjct: 80  EYDNALYNHLKETYKD----INIIHNDILKVNINDI-DKNKNFDVYGNIPYNIASPII-E 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           W+  D +   W     + Q +   R+ A++ S  Y  L++   + +   + +++S  VF+
Sbjct: 134 WLFCDCYNR-WNYAVFMVQSDFANRLIAKEGSEDYSALTLFASFMSDIKLEYNVSKEVFY 192

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS--------LKRLGGEN 248
           P PKVTS++I   P    +   L   K +++  F  RRKT++ +        + +   + 
Sbjct: 193 PIPKVTSSIISIKPKEVDLS-MLNIFKSVSKTLFHNRRKTIKNNFLKSPYIDIDKDKIDE 251

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +L +A I+  +R E+LSIE    ++ I+ D
Sbjct: 252 ILEKANIDKEIRGESLSIEKVKELSLIIKD 281


>gi|305681981|ref|ZP_07404785.1| dimethyladenosine transferase [Corynebacterium matruchotii ATCC
           14266]
 gi|305658454|gb|EFM47957.1| dimethyladenosine transferase [Corynebacterium matruchotii ATCC
           14266]
          Length = 289

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 138/277 (49%), Gaps = 17/277 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLT 67
           ++T+ S   I P K +GQNFL D N ++ I  ++   D     V+E+G G G+LT  L+T
Sbjct: 12  IRTLASELDITPTKKLGQNFLHDPNTVRMIVTTAQFTDVTNRHVLEVGPGLGSLTLGLVT 71

Query: 68  LGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
               KV  IE D +    L     + +  + +RL +   DAL V  +     + P  ++A
Sbjct: 72  -ACEKVTAIEIDPRLAARLPRTIAEFAPDYADRLTVSNRDALTVSPQDIDMSTPPTALVA 130

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L + ++     P    + ++ Q EV +R+ A+  +  YG  SV   +  +
Sbjct: 131 NLPYNVSVPILLHLLAEF---PSIARVVVMVQAEVADRLAARPGTKIYGVPSVKAAFYGQ 187

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLK 242
                 I  +VF+P+PK+ S ++  I   +P    L +++  +   AF +RRKTLR +L 
Sbjct: 188 VRRAGTIGKNVFWPAPKIDSGLVS-IDCTHPYSSSLRDTVFPLIDAAFLQRRKTLRAALS 246

Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
            + G     E  L +A I+  LR E L I DF R+  
Sbjct: 247 GVYGSASQAEEALRRAQIDPTLRGEKLDISDFIRLAT 283


>gi|94986964|ref|YP_594897.1| dimethyladenosine transferase [Lawsonia intracellularis PHE/MN1-00]
 gi|118600874|sp|Q1MR01|RSMA_LAWIP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94731213|emb|CAJ54575.1| rRNA (adenine-N6,N6)-dimethyltransferase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 271

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 134/261 (51%), Gaps = 16/261 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL D  I  +I +     +G  + EIG G G LT+ +      +++++EKD 
Sbjct: 7   PKKSLGQHFLKDTAIAYRIVKLLDIHEGENIFEIGPGQGALTRHIYGYNPGQLLLVEKDS 66

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
            +      +  Q+ +++ I   DALK  +E    +    ++I+NLPYN+G+ L+++ +S 
Sbjct: 67  CWVDYHSSVKQQNVSKVTIHHLDALKFSWE---TLCGSWKVISNLPYNVGSALIWDIVSR 123

Query: 141 DTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                  +S++    + QKEV +R+ A   +  YG LSV      K    F + PH F+P
Sbjct: 124 V------QSMSRAVFMVQKEVADRLCACPGTKSYGVLSVWVQSFAKVEWGFIVKPHSFYP 177

Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQA 253
            PKV S ++   P      P   ++   I ++ F  RRK ++  L+++G  N    L + 
Sbjct: 178 QPKVDSAIVTLYPKPREEQPKNSKTFAWIIKQCFQHRRKQMQSILRKIGFLNYYESLERI 237

Query: 254 GIETNLRAENLSIEDFCRITN 274
           GI  + R E+LS + F +++ 
Sbjct: 238 GISPSARPESLSNQLFQQLSQ 258


>gi|306824012|ref|ZP_07457386.1| dimethyladenosine transferase [Bifidobacterium dentium ATCC 27679]
 gi|309801986|ref|ZP_07696100.1| dimethyladenosine transferase [Bifidobacterium dentium JCVIHMP022]
 gi|304553010|gb|EFM40923.1| dimethyladenosine transferase [Bifidobacterium dentium ATCC 27679]
 gi|308221434|gb|EFO77732.1| dimethyladenosine transferase [Bifidobacterium dentium JCVIHMP022]
          Length = 316

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 133/287 (46%), Gaps = 22/287 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I     I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L
Sbjct: 25  AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 84

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D      L + I+   P+   R  +I  DAL V  E    F+      
Sbjct: 85  ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 143

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D       S  ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 144 LVANLPYNVATPILLTLLERFDNL----HSFLVMVQKEVADRLAAKPGSKIYGTPSVKLA 199

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF----------IPHLNPIPCCLESLKKITQEA 229
           W   A     I  +VF+P+P V S ++ F              N      E++ ++   A
Sbjct: 200 WYGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSANGPAAKRETVFRLIDAA 259

Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           FG+RRKTL  +L+R   +     AGI+   R E L+I++F  +   L
Sbjct: 260 FGQRRKTLHAALRRFVPDETFDMAGIDPTRRGETLTIDEFVALARAL 306


>gi|50364820|ref|YP_053245.1| dimethyladenosine transferase [Mesoplasma florum L1]
 gi|62900520|sp|Q6F2B4|RSMA_MESFL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|50363376|gb|AAT75361.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Mesoplasma florum
           L1]
          Length = 267

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 131/274 (47%), Gaps = 28/274 (10%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK  GQNF+ D N++ KI    G+     +IEIG G G LT+ LL     KV+ IE
Sbjct: 2   KVEAKKKFGQNFISDQNLINKIVSILGNDKDQLIIEIGPGTGALTK-LLAQKYNKVVAIE 60

Query: 78  KDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIRIIANLPYNIGT 131
            D    PIL K+I++ +    E+   D L VDFEK       + +  + II+N+PY I +
Sbjct: 61  IDTDMEPILKKEITNDN---FELFLSDVLLVDFEKLIKEKRQHENQKVSIISNMPYYITS 117

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            +LF  ++             + QKEV  R+ + K   +Y  LSV   +       F + 
Sbjct: 118 EILFRTLNVSDK---LTKAVFMMQKEVAIRVCSYKGENNYNNLSVACEFYADKKYEFTVP 174

Query: 192 PHVFFPSPKVTSTVI------HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            H+F+P PKV S +I       +   +      L  L+KI    F  RRKT+  +L  + 
Sbjct: 175 KHMFYPVPKVDSAIISLTFNNKYTEQIKDKDKFLTFLRKI----FNNRRKTILNNLSNVT 230

Query: 246 GE-----NLLHQAGIETNLRAENLSIEDFCRITN 274
            +      +L    I+ +LR E + +EDF RI N
Sbjct: 231 NDKTKANEILDNLNIDKSLRPEVVGLEDFIRIYN 264


>gi|167957599|ref|ZP_02544673.1| dimethyladenosine transferase [candidate division TM7 single-cell
           isolate TM7c]
          Length = 260

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 138/263 (52%), Gaps = 33/263 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ++L D  IL  IA+ +      T++EIG G G LT +LL+  A++VI IE D  
Sbjct: 5   KKHLGQHWLRDRFILNHIADCADINKNDTIVEIGPGLGTLTSILLS-RAKEVISIEFDAD 63

Query: 82  FFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              + + +  Q P + L +I  D L+ D +   N+    +++ANLPY I  +++  + ++
Sbjct: 64  ---LARKLPGQFPGKDLTVINQDILEFDTD---NLPKKYKLVANLPYYITAKVIHKFTTS 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL--TGWRTKATMMFDISPHVFF-P 197
              P     + LL QKEV ER+ AQ      GR+S+L  +        + D+ P  +F P
Sbjct: 118 KNRP---SKMVLLVQKEVAERVVAQP-----GRMSLLSVSSQLYANVSLGDVVPACYFTP 169

Query: 198 SPKVTSTVIHF---IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-------- 246
            PKV S V+ F    P L P     + L +I +  F  RRK LR SL   GG        
Sbjct: 170 PPKVDSQVLIFDMIDPKL-PSDISEKELFRIVKAGFSSRRKKLRSSLS--GGLNINKNSV 226

Query: 247 ENLLHQAGIETNLRAENLSIEDF 269
           E LL Q GI  + RAE+LS+ED+
Sbjct: 227 ETLLMQTGISPDHRAEDLSVEDW 249


>gi|317484454|ref|ZP_07943366.1| dimethyladenosine transferase [Bilophila wadsworthia 3_1_6]
 gi|316924278|gb|EFV45452.1| dimethyladenosine transferase [Bilophila wadsworthia 3_1_6]
          Length = 268

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 130/261 (49%), Gaps = 15/261 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           KK +GQ+FL D     +I +    G  D   V+EIG GPG +T ++   G  +  +IEKD
Sbjct: 12  KKSLGQHFLKDAKTSARIVDLLRIGPED--RVLEIGPGPGAITGIIHERGPAEFRLIEKD 69

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             +     ++    P  ++++  DAL   +E   ++  P +II+NLPYN+G+ L+++ +S
Sbjct: 70  SYWAAHHAELERPAPA-VQVLNADALAFPWE---SLEGPWKIISNLPYNVGSPLMWDIVS 125

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P       + QKEV ER+ A+  +  YG LSV      +    F + P  F P P
Sbjct: 126 RT---PDLTRAVFMVQKEVAERLYAKPGTKDYGALSVWIQSYVRVEWGFVVGPGAFNPPP 182

Query: 200 KVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQAGI 255
           KV S V+ FIP      P   ++L  I +  F  RRK L+  L+R G ++    L + GI
Sbjct: 183 KVDSAVVTFIPLPRERHPADPKALSSILKLCFQLRRKQLQSILRRAGRDDTAAALERLGI 242

Query: 256 ETNLRAENLSIEDFCRITNIL 276
               R E L+ E F ++  I 
Sbjct: 243 APEARPETLTPEQFQQLAGIF 263


>gi|288803714|ref|ZP_06409143.1| dimethyladenosine transferase [Prevotella melaninogenica D18]
 gi|288333803|gb|EFC72249.1| dimethyladenosine transferase [Prevotella melaninogenica D18]
          Length = 267

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 135/268 (50%), Gaps = 15/268 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DL+I ++IA++  +   I V+EIG G G LTQ L+    R+V  +E D 
Sbjct: 6   PKKNLGQHFLTDLSIARQIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEIDS 64

Query: 81  QFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    L +   + P  R  I+  D L++D  + F+      +  N PY+I +++ F  + 
Sbjct: 65  ESVAFLYE---KFPKLRENILGQDFLRMDLNEVFD-GRQFVLTGNYPYDISSQIFFKMLE 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     T + Q+EV +R+ A   S  YG LSVL         +F +  +VF P P
Sbjct: 121 YKDLIP---CCTGMIQREVAQRMAAGPGSKTYGILSVLMQAWYNVEYLFTVDENVFNPPP 177

Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQAG 254
           KV S VI    + +  I C     K++ +  F +RRK LR SL+++       +  ++  
Sbjct: 178 KVKSAVIRMTRNEVTDIGCDQVLFKRVVKTVFNQRRKMLRVSLRQIFNAVKPTDGFYEQD 237

Query: 255 IETNLRAENLSIEDFCRITNILTDNQDI 282
           I T  R E LSI  F  +TN++ +   I
Sbjct: 238 IMTK-RPEQLSIAQFVELTNMVEEQLKI 264


>gi|300778905|ref|ZP_07088763.1| dimethyladenosine transferase [Chryseobacterium gleum ATCC 35910]
 gi|300504415|gb|EFK35555.1| dimethyladenosine transferase [Chryseobacterium gleum ATCC 35910]
          Length = 256

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/270 (35%), Positives = 127/270 (47%), Gaps = 30/270 (11%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL D NI +KI E     +   ++E+G G G LT+ LL          EKDQ 
Sbjct: 6   KKHLGQHFLTDENIARKIVEGLSFENYNNIMEVGPGMGVLTKYLL----------EKDQN 55

Query: 82  FFPILKDISSQHPNRL---------EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            +  L +I ++    L         E    D LK DF   F     I II N PYNI ++
Sbjct: 56  IY--LAEIDTESIEYLKNNYTKVTEETFVGDFLKQDFN--FIKEDQIAIIGNFPYNISSQ 111

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +LF  +      P    +  +FQKEV ER  A   +  YG LSVL       + MF +  
Sbjct: 112 ILFQIVDHYQLIP---EMVGMFQKEVAERTAAVPRTKDYGILSVLIQAYYDVSYMFTVHE 168

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           +VF P PKV S VI    +        E L K+I +  F +RRK L  +LK L     L 
Sbjct: 169 NVFNPPPKVKSGVIRLTRNPKEGLAGNEVLFKQIVKAGFNQRRKKLSNALKILNTPEAL- 227

Query: 252 QAGIE-TNLRAENLSIEDFCRITNILTDNQ 280
             G E  + RAE LS+ DF    N+  +NQ
Sbjct: 228 -KGHEFLDKRAEELSVADFIHFANLWKENQ 256


>gi|148886595|sp|Q4A775|RSMA_MYCH7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|144575570|gb|AAZ54014.2| dimethyladenosine transferase [Mycoplasma hyopneumoniae 7448]
          Length = 259

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 133/267 (49%), Gaps = 17/267 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +PKK++GQNFL D  I +KI E+   L    +IEIG G G LT  LL   A+ V   E
Sbjct: 3   KPVPKKHLGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-RAKFVTCYE 60

Query: 78  KDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D+   PIL     +  N+ L II +D L  + E          IIANLPY I +++LF 
Sbjct: 61  IDRNLIPIL---EKKFKNKNLRIINEDFLLAELE----FKEKKTIIANLPYYITSKILFK 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I A+     ++ + L+ Q EV +RI A+  +P Y +LS+ + +      +F + P  FF
Sbjct: 114 -IFANFEK--FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFF 170

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQ 252
           P PKV S V+ F    N     +E     T++ F  +RKTL  +    L +   E + + 
Sbjct: 171 PKPKVNSAVVLFDFRENLEAKKMEEFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNF 230

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
                N+R + L +  + R+ +   +N
Sbjct: 231 FQFAQNIRPQQLDLVTYIRLADFYFNN 257


>gi|325680208|ref|ZP_08159773.1| dimethyladenosine transferase [Ruminococcus albus 8]
 gi|324108157|gb|EGC02408.1| dimethyladenosine transferase [Ruminococcus albus 8]
          Length = 286

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 138/278 (49%), Gaps = 18/278 (6%)

Query: 3   MNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+N S+   +K ++  +     K +GQNFL++ ++  +IAE   +  G  VIEIG G G 
Sbjct: 1   MDNLSNIGVIKDVMQRHGFTFSKALGQNFLVNPSVCPRIAEMGNAKKGFGVIEIGTGVGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117
           LT  L    A KV+ IE D +  P+L++  ++H N +++I  D ++VD  K         
Sbjct: 61  LTNELAKR-ADKVVAIEIDDRLIPVLEETLAEHDN-VKVINADVMEVDLHKLIEEEFDGL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            + + ANLPY I + +L   +          S+T++ QKE G R+ A   +   G ++V 
Sbjct: 119 EVAVCANLPYYITSPILMMLLEQRLR---IRSVTVMVQKEAGTRLCAPVGTRDMGAVTVA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRK 235
             + +   ++F++S   F P+P V S V+ F I    P     E+   K+ + AF +RRK
Sbjct: 176 VNYFSAPKILFNVSRGSFMPAPNVDSCVVRFDIKEDTPAGVTDEAFFFKMVRAAFSQRRK 235

Query: 236 TLRQS------LKRLGGENLLHQAGIETNLRAENLSIE 267
           TL  S      L +      +  +G+   +R E L +E
Sbjct: 236 TLVNSVSSGMGLDKAAVTKAVENSGLPAAVRPEQLKME 273


>gi|307324292|ref|ZP_07603500.1| dimethyladenosine transferase [Streptomyces violaceusniger Tu 4113]
 gi|306890023|gb|EFN21001.1| dimethyladenosine transferase [Streptomyces violaceusniger Tu 4113]
          Length = 289

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 130/276 (47%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++G      V+E+G G G+LT  LL   
Sbjct: 15  IRALAARLGVRPTKQRGQNFVIDANTVRRIVRTAGVRPEDVVVEVGPGLGSLTLALLE-A 73

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPNRLE---IIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V  +E D      L   + ++ P+R +   ++  DAL+V         +P  ++ANL
Sbjct: 74  ADRVTAVEIDDVLAAALPATVEARLPHRADHFALVHHDALRV---TELPGPAPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG  SV   W     
Sbjct: 131 PYNVAVPVLLHMLGRF---PTIERTLVMVQAEVADRLAAPPGSKVYGVPSVKAAWYAHVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR----- 238
               I  +VF+P+P V S ++  I    P+      E +  +   AF +RRKTLR     
Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLIRRDEPLRTTATREEVFAVVDAAFAQRRKTLRAALAG 247

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +      E  L  AG+    R E+L++EDF  I  
Sbjct: 248 WAGSAGAAEEALKAAGVSPQARGESLTVEDFAAIAE 283


>gi|282856259|ref|ZP_06265542.1| dimethyladenosine transferase [Pyramidobacter piscolens W5455]
 gi|282586018|gb|EFB91303.1| dimethyladenosine transferase [Pyramidobacter piscolens W5455]
          Length = 269

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 124/253 (49%), Gaps = 8/253 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K  +GQNFL +  + ++  E+ G      V+EIG G G LT+ LL    R V  +E D++
Sbjct: 8   KISLGQNFLNNPAVARRCLEAGGLNSEDVVLEIGPGQGALTRALLQSPCRFVHALEIDRR 67

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P L+ + + HP R EI   DAL  D  + F +  P +++AN+PYNI T L++  I  +
Sbjct: 68  LAPWLEPLRAGHPGRFEISWGDALSADLRELFPL--PNKVLANIPYNITTELIWK-ILVE 124

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P   E L LL QKE  +R+ A   +     L +     +    +  ++P  F P PKV
Sbjct: 125 LGPRRLERLILLVQKEAADRLNAPPATKGRSPLGITLEQMSAVRTLMKVAPGSFNPPPKV 184

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GEN----LLHQAGIE 256
            S +I      N         +++   AF +RRK L  +L   G G++    +L  AGI+
Sbjct: 185 WSALISIDLEENLDLAASPPWRRLLAAAFAQRRKKLANNLAAAGYGKDRIATILSSAGID 244

Query: 257 TNLRAENLSIEDF 269
              RAE L+   +
Sbjct: 245 PMSRAEELTASQW 257


>gi|323344894|ref|ZP_08085118.1| dimethyladenosine transferase [Prevotella oralis ATCC 33269]
 gi|323094164|gb|EFZ36741.1| dimethyladenosine transferase [Prevotella oralis ATCC 33269]
          Length = 269

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 136/263 (51%), Gaps = 13/263 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL DL+I K+IA++  +   I ++EIG G G LTQ L+T   R+V  +E D+
Sbjct: 6   PKKNLGQHFLTDLSIAKRIADTVDTCPDIPILEIGPGMGVLTQFLVTKN-REVRAVEIDR 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L +   Q   R +II +D L++D    F   + + +  N PY+I +++ F  +  
Sbjct: 65  ESVAFLHENYPQL--RDKIIGEDFLRMDLSTIFGGHTFV-LTGNYPYDISSQIFFKMLE- 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             +  F    T + Q+EV +RI A   +   G LS+L         +F +  +VF P PK
Sbjct: 121 --YRQFIPCCTGMIQREVAQRIAASPGNKLNGILSILIQAWYNVEYLFTVDENVFDPPPK 178

Query: 201 VTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQAGI 255
           V S VI     ++  + C     K++ +  F +RRK LR SL+++  +     + +   +
Sbjct: 179 VKSAVIRMTRNNVTDLGCDEVLFKRLVKAVFNQRRKMLRVSLRQIFNQTKPSAVFYAQDV 238

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
            T  R E L +  F  +TNI+ +
Sbjct: 239 MTK-RPEQLGVAQFVALTNIVAE 260


>gi|283457073|ref|YP_003361637.1| dimethyladenosine transferase [Bifidobacterium dentium Bd1]
 gi|283103707|gb|ADB10813.1| KsgA Dimethyladenosine transferase [Bifidobacterium dentium Bd1]
          Length = 308

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 135/287 (47%), Gaps = 22/287 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I     I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L
Sbjct: 17  AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 76

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D      L + I+   P+   R  +I  DAL V  E    F+      
Sbjct: 77  ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 135

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D       S  ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 136 LVANLPYNVATPILLTLLERFDNL----HSFLVMVQKEVADRLAAKPGSKIYGTPSVKLA 191

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLNPI--PCC-LESLKKITQEA 229
           W   A     I  +VF+P+P V S ++ F        P  +    P    E++ ++   A
Sbjct: 192 WYGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSADGPAAKRETVFRLIDAA 251

Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           FG+RRKTL  +L+R   +     AGI+   R E L+I++F  +   L
Sbjct: 252 FGQRRKTLHAALRRFVPDEAFDMAGIDPTRRGETLTIDEFVALARAL 298


>gi|298529691|ref|ZP_07017094.1| dimethyladenosine transferase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511127|gb|EFI35030.1| dimethyladenosine transferase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 258

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 132/263 (50%), Gaps = 22/263 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL D+NI +KI ++        V+EIG G G LT  LL   A  V+ +EKD  
Sbjct: 7   KKSLGQNFLQDMNIARKIVDALEPGHKDRVLEIGPGKGVLT-ALLADRAGLVLGVEKD-- 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +F  L     + P  L+ +  DAL++D+ +       ++II NLPYNI   LL  W  A 
Sbjct: 64  YF--LTFALDRCPG-LQAVNMDALQLDWSRLDRWPG-LKIIGNLPYNIAQTLL--WDMAA 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
               F +   ++ QKEV +RITA      YG LS+     T   ++F++SP VF P P V
Sbjct: 118 GCRSF-DRAVVMVQKEVAQRITAGPGGKEYGALSIWLQSFTTPRVLFNVSPGVFRPRPSV 176

Query: 202 TSTVIHFIPHLNPIPC-----CLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQA 253
            S+V+     L P+P          L ++ +  F  RRK L + LK    +     L Q 
Sbjct: 177 DSSVL----ELRPLPADKIFFVPRDLARVVKTMFQNRRKQLGRILKTYWNDRRKIALEQC 232

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
           G++   R E LS EDF  ++  L
Sbjct: 233 GLDPRARPEQLSPEDFQGLSKCL 255


>gi|330465668|ref|YP_004403411.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Verrucosispora maris AB-18-032]
 gi|328808639|gb|AEB42811.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Verrucosispora maris AB-18-032]
          Length = 290

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 133/276 (48%), Gaps = 19/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N +++I  ++G       +E+G G G+LT  LL + 
Sbjct: 11  IRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLTGDDVALEVGPGLGSLTLALLPVA 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L D +++H      RL +   DAL++   +  +  +P  ++ANL
Sbjct: 71  A-HVHAVEIDPTLAAALPDTAARHAGPHAARLTVHHADALRITGAELTD-PAPTALVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++    P     L ++ QKEV +R+ A   S  YG  SV   W   A 
Sbjct: 129 PYNVAVPVVLHLLA--VLPSLRHGL-VMVQKEVADRLVAGPGSKVYGIPSVKLAWYAHAR 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLR---- 238
               + P+VF+P P V S ++ F    P    +P   E +  +   AF +RRKTLR    
Sbjct: 186 AAGKVPPNVFWPVPNVDSGLVAFTRREPPRADVP--REQVFAVVDAAFAQRRKTLRAALA 243

Query: 239 -QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
             +         L  AG++   R E+L++E F  + 
Sbjct: 244 GWAGGADRAAAALTAAGVDPGARGESLTVEQFAAVA 279


>gi|225023033|ref|ZP_03712225.1| hypothetical protein CORMATOL_03081 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944256|gb|EEG25465.1| hypothetical protein CORMATOL_03081 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 302

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 138/277 (49%), Gaps = 17/277 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLT 67
           ++T+ S   I P K +GQNFL D N ++ I  ++   D     V+E+G G G+LT  L+T
Sbjct: 25  IRTLASELDITPTKKLGQNFLHDPNTVRMIITTAQFTDVTNRHVLEVGPGLGSLTLGLVT 84

Query: 68  LGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
               KV  IE D +    L     + +  H ++L +   DAL V  +     + P  ++A
Sbjct: 85  -ACEKVTAIEIDPRLAARLPRTIAEFAPDHADQLTVSNRDALTVSPQDIDMSTPPTALVA 143

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L + ++     P    + ++ Q EV +R+ A+  +  YG  SV   +  +
Sbjct: 144 NLPYNVSVPILLHLLAEF---PSIARVVVMVQAEVADRLAARPGTKIYGVPSVKAAFYGQ 200

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLK 242
                 I  +VF+P+PK+ S ++  I   +P    L +++  +   AF +RRKTLR +L 
Sbjct: 201 VRRAGTIGKNVFWPAPKIDSGLVS-IDCTHPYSSSLRDTVFPLIDAAFLQRRKTLRAALS 259

Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
            + G     E  L +A I+  LR E L I DF R+  
Sbjct: 260 GVYGSASQAEEALRRAQIDPTLRGEKLDISDFIRLAT 296


>gi|124515833|gb|EAY57342.1| putative dimethyladenosine transferase [Leptospirillum rubarum]
          Length = 256

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 134/230 (58%), Gaps = 16/230 (6%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G G L+ +L T+    + ++E+D+Q    L+   S+ P  + I+++DA++  F 
Sbjct: 12  ILEIGPGKGILSGVLATM-TEDLWLVERDRQLAETLRKTFSETPG-VRILEEDAMEFSFG 69

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              N  SP  +++NLPYNI   L   ++++D +PP +  + L+FQ+EV +R+ A+   P 
Sbjct: 70  ---NDRSPYILVSNLPYNISVPLYLKFLASD-FPPVF--MVLMFQREVAKRLLARTTDPD 123

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF 230
           YG LSV+T +  +     D++P  F+P+PKV S+V+  +P L+    C  +   ++++ F
Sbjct: 124 YGHLSVVTSYLAQIRKRIDLAPGAFYPAPKVHSSVVTVLP-LSVQDECTWAAISLSRKLF 182

Query: 231 GKRRKTLRQSLKRL--GGENLLHQAGIET-----NLRAENLSIEDFCRIT 273
             RRK+L ++L+    G E+LL     +T     + + ++LS EDF ++ 
Sbjct: 183 CYRRKSLGRALRTAFSGEESLLDGTFFKTETDFFSRKVDSLSPEDFRKLA 232


>gi|255560978|ref|XP_002521501.1| dimethyladenosine transferase, putative [Ricinus communis]
 gi|223539179|gb|EEF40772.1| dimethyladenosine transferase, putative [Ricinus communis]
          Length = 366

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 114/225 (50%), Gaps = 12/225 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           S  K+   K  GQ+ L +  +L  I   S      TV+EIG G GNLT  LL + ARKV+
Sbjct: 47  SQEKLHLYKSKGQHLLTNPRVLDTIVRRSAVEPTDTVLEIGPGTGNLTLRLLEV-ARKVV 105

Query: 75  VIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            +E D++   IL++ +S+    ++L+II  DALK +F  F NI     ++AN+PY I + 
Sbjct: 106 AVEIDKRMVEILRERASEQGLQDKLDIIHKDALKAEFPNF-NI-----VVANIPYGISSP 159

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           L+   +        + SLTLL QKE   R+ A    P Y RL+V          + D+S 
Sbjct: 160 LVTKLVYGVNK---FRSLTLLLQKEFARRLLANPGDPEYNRLAVNVKLVADVEFVMDVSK 216

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             F PSPKV S+V+   P        L   +  T+  FG + KTL
Sbjct: 217 RDFVPSPKVDSSVVIIRPKTEIPSVNLVEWRAFTRTCFGNKNKTL 261


>gi|154486326|ref|ZP_02027733.1| hypothetical protein BIFADO_00135 [Bifidobacterium adolescentis
           L2-32]
 gi|154084189|gb|EDN83234.1| hypothetical protein BIFADO_00135 [Bifidobacterium adolescentis
           L2-32]
          Length = 308

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 31/304 (10%)

Query: 1   MTMNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV 51
           MT N   H+         ++ I +   I P K  GQNF++D   +++I   +G      V
Sbjct: 6   MTENVNEHTQGHLLGAADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHV 65

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN---RLEIIQDDALKV 107
           +E+G G G+LT  +L  GA  +  +E D      L K I+   P+   R  ++  DAL V
Sbjct: 66  LEVGPGLGSLTLAILETGA-TMTAVEIDPPVAERLPKTIAEFMPDAVDRFRVVNRDALTV 124

Query: 108 DFEKF--FNISSPIRIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITA 164
           + E    F       ++ANLPYN+ T +L   +   D    F     ++ QKEV +R++ 
Sbjct: 125 NPENLPDFKDDDSFTLVANLPYNVATPILLTLLERFDNLGTFL----VMVQKEVADRLSE 180

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLNPIPC 217
           +  S  YG  SV   W      +  I  +VF+P+P V S ++ F        P  +    
Sbjct: 181 KPGSKIYGTPSVKLAWYGTTERVGVIGRNVFWPAPNVDSALVLFKRYPGGHTPAADNADG 240

Query: 218 CL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +   E++ ++   AFG+RRKTL  +LK++       +AGI+   R E L+I++F  +  
Sbjct: 241 SVVDRETVFRLIDAAFGQRRKTLHAALKKIVPSEAFEKAGIDPTRRGETLTIDEFVALAR 300

Query: 275 ILTD 278
            L +
Sbjct: 301 ALDE 304


>gi|148886596|sp|Q4A936|RSMA_MYCHJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|144227742|gb|AAZ44735.2| dimethyladenosine transferase [Mycoplasma hyopneumoniae J]
          Length = 259

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 17/267 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +PKK++GQNFL D  I +KI E+   L    +IEIG G G LT  LL   A+ V   E
Sbjct: 3   KPVPKKHLGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-KAKFVTCYE 60

Query: 78  KDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D+   PIL     +  N+ L II +D L  + E          IIANLPY I +++LF 
Sbjct: 61  IDRNLIPIL---EKKFKNKNLRIINEDFLLAELE----FKEKKTIIANLPYYITSKILFK 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I A+     ++ + L+ Q EV +RI A+  +P Y +LS+ + +      +F + P  FF
Sbjct: 114 -IFANFEK--FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAHVKKLFVVGPDSFF 170

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQ 252
           P PK+ S V+ F    N      E     T++ F  +RKTL  +    L +   E + + 
Sbjct: 171 PKPKINSAVVFFDLRTNLDAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNF 230

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
                N+R + L +  + R+ +   +N
Sbjct: 231 FQFAQNIRPQQLDLVTYIRLADFYFNN 257


>gi|158521647|ref|YP_001529517.1| dimethyladenosine transferase [Desulfococcus oleovorans Hxd3]
 gi|226729778|sp|A9A0E0|RSMA_DESOH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|158510473|gb|ABW67440.1| dimethyladenosine transferase [Desulfococcus oleovorans Hxd3]
          Length = 289

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 137/287 (47%), Gaps = 22/287 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S +TILS + I PKK +GQNFL D    + I    G      V+E+G G G LT +    
Sbjct: 3   SPRTILSGHDIAPKKSLGQNFLCDPQAAEMIVRKCGLSKADVVVEVGPGTGALT-IPAAG 61

Query: 69  GARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLP 126
            A  V  IE D +    LK+ + +   + + ++  D +K D  +        + ++ NLP
Sbjct: 62  QAAWVYAIETDGRLIEPLKETVRAAGLDNVTVLHRDIMKTDIREICREAGRKLVVLGNLP 121

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I +++L + +         +   L+FQ+E+  RI A   +  YGR+SV   +  + + 
Sbjct: 122 YYISSQILMDLVEKRE---AVDRAVLMFQQELARRIAAPPGNREYGRISVALRYCAELST 178

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESL-KKITQEAFGKRRKTLRQSLK 242
           +  + P++FFP P V S V+  +    P P    C E+L   + + AF  RRKT++ +L 
Sbjct: 179 VARLKPNLFFPRPGVDSEVVRIV--FRPWPGNRDCDEALFFAMIKSAFATRRKTIKNALS 236

Query: 243 R-------LGGENLLHQAGIETNLRAENLSIEDF---CRITNILTDN 279
                      E LL +A +   +RAE L + DF   CR    ++ N
Sbjct: 237 AGMTKISPSAWEELLVRADVAPTVRAETLDVGDFLNICRHYKAMSGN 283


>gi|148643434|ref|YP_001273947.1| dimethyladenosine transferase [Methanobrevibacter smithii ATCC
           35061]
 gi|148552451|gb|ABQ87579.1| dimethyladenosine transferase, KsgA [Methanobrevibacter smithii
           ATCC 35061]
          Length = 303

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 13/207 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S + K IL+ Y I   K +GQN+L+D N   +I +         V+EIG G G LT + L
Sbjct: 11  SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLT-IEL 69

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               +KVI IE+D     IL++ +  ++ + +E+I DDAL V+F KF       +II+NL
Sbjct: 70  AKRVKKVIAIEQDSNICQILENRLKKENIDNVELINDDALNVEFPKFD------KIISNL 123

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + + F +++ D     ++   L++QKE   R+  +  S  Y RLS +  ++    
Sbjct: 124 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 178

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL 212
           ++  +S   F P PKV STV+   P L
Sbjct: 179 LLTGVSAESFIPKPKVDSTVVRLTPKL 205


>gi|222445676|ref|ZP_03608191.1| hypothetical protein METSMIALI_01317 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435241|gb|EEE42406.1| hypothetical protein METSMIALI_01317 [Methanobrevibacter smithii
           DSM 2375]
          Length = 306

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 13/207 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S + K IL+ Y I   K +GQN+L+D N   +I +         V+EIG G G LT + L
Sbjct: 14  SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLT-IEL 72

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               +KVI IE+D     IL++ +  ++ + +E+I DDAL V+F KF       +II+NL
Sbjct: 73  AKRVKKVIAIEQDSNICQILENRLKKENIDNVELINDDALNVEFPKFD------KIISNL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + + F +++ D     ++   L++QKE   R+  +  S  Y RLS +  ++    
Sbjct: 127 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL 212
           ++  +S   F P PKV STV+   P L
Sbjct: 182 LLTGVSAESFIPKPKVDSTVVRLTPKL 208


>gi|300858098|ref|YP_003783081.1| dimethyladenosine transferase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685552|gb|ADK28474.1| dimethyladenosine transferase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302205822|gb|ADL10164.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis
           C231]
 gi|302330381|gb|ADL20575.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276057|gb|ADO25956.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis
           I19]
          Length = 290

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 132/271 (48%), Gaps = 22/271 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P K +GQNF+ D N ++ I  ++       V+EIG G G+LT  LL   AR V  +E 
Sbjct: 24  VTPTKKLGQNFVHDPNTVRMIVSAADLTADDHVVEIGPGLGSLTLALLDT-ARSVTAVEI 82

Query: 79  D----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           D    +Q    + + +    +RL ++  DAL+V  E+   I  P  ++ANLPYN+   +L
Sbjct: 83  DPRLAEQLPMTVAERAPMFSDRLTLVHKDALQVTAEE---IGQPTALVANLPYNVSVPVL 139

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            +++      P  + + ++ Q EV +R+ AQ  +  YG  SV   +         I  +V
Sbjct: 140 LHFLQIF---PSIQRVLVMVQAEVADRLAAQPGTKVYGVPSVKASFYGSVRRAGSIGKNV 196

Query: 195 FFPSPKVTSTVIH---FIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGG-- 246
           F+P+PK+ S ++    F     P     E   ++      AF +RRKTLR +L    G  
Sbjct: 197 FWPAPKIESGLVRIDVFTQDNQPWEVGDELRSQVFPLIDAAFAQRRKTLRAALSGYYGSG 256

Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITN 274
              E+ L  AGI+  LR E L + DF R+  
Sbjct: 257 AAAESALLGAGIDPTLRGEKLDVADFVRLAQ 287


>gi|283458615|ref|YP_003363250.1| dimethyladenosine transferase [Rothia mucilaginosa DY-18]
 gi|283134665|dbj|BAI65430.1| dimethyladenosine transferase [Rothia mucilaginosa DY-18]
          Length = 290

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 137/276 (49%), Gaps = 20/276 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     I P K +GQNF++D N +++I  ++      TV+E+G G G+LT  +L   
Sbjct: 12  IRELAEMLGIRPTKTLGQNFVIDPNTIRRIVNAAEISPEETVLEVGPGLGSLTLGILD-A 70

Query: 70  ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIAN 124
           A+ ++ +E D    QQ    ++    +  + ++++  DALKV +  +     +P  ++AN
Sbjct: 71  AKDMVAVEIDPPLAQQLPHTIEKFRPEKADDIDVVLMDALKVTELPR-----TPDALVAN 125

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L +  +   +P    +L ++ Q EV +R++A   S  YG  SV   W  + 
Sbjct: 126 LPYNVAVPVLLHLFA--QFPSIRHALVMV-QDEVADRLSATPGSKIYGVPSVKANWYAEV 182

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243
                I  +VF+P+PK+ S ++ F     P+      L   I   AF +RRKTLR +L  
Sbjct: 183 YKAGVIGKNVFWPAPKINSGLVGFRMREEPLSTVDRDLVFTIVDAAFAQRRKTLRAALSS 242

Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
             G     E +L  AGI    R E L I  F RI  
Sbjct: 243 WAGSGARAEQILVAAGIAPTERGEKLDIHGFIRIAE 278


>gi|171741750|ref|ZP_02917557.1| hypothetical protein BIFDEN_00841 [Bifidobacterium dentium ATCC
           27678]
 gi|171277364|gb|EDT45025.1| hypothetical protein BIFDEN_00841 [Bifidobacterium dentium ATCC
           27678]
          Length = 316

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 135/287 (47%), Gaps = 22/287 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I     I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L
Sbjct: 25  AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 84

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D      L + I+   P+   R  +I  DAL V  E    F+      
Sbjct: 85  ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 143

Query: 121 IIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ++ANLPYN+ T +L   +   D       S  ++ QKEV +R+ A+  S  YG  SV   
Sbjct: 144 LVANLPYNVATPILLTLLERFDNL----HSFLVMVQKEVADRLAAKPGSKIYGTPSVKLA 199

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLNPI--PCC-LESLKKITQEA 229
           W   A     I  +VF+P+P V S ++ F        P  +    P    E++ ++   A
Sbjct: 200 WYGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSADGPAAKRETVFRLIDAA 259

Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           FG+RRKTL  +L+R   +     AGI+   R E L+I++F  +   L
Sbjct: 260 FGQRRKTLHAALRRFVPDEAFDMAGIDPTRRGETLTIDEFVALARAL 306


>gi|312601595|gb|ADQ90850.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma
           hyopneumoniae 168]
          Length = 259

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 132/267 (49%), Gaps = 17/267 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +PKK++GQNFL D  I +KI E+   L    +IEIG G G LT  LL   A+ V   E
Sbjct: 3   KPVPKKHLGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-KAKFVTCYE 60

Query: 78  KDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D+   PIL     +  N+ L II +D L  + E          IIANLPY I +++LF 
Sbjct: 61  IDRNLIPIL---EKKFKNKNLRIINEDFLLAELES----KEKKTIIANLPYYITSKILFK 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I A+     ++ + L+ Q EV +RI A+  +P Y +LS+ + +      +F + P  FF
Sbjct: 114 -IFANFEK--FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFF 170

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQ 252
           P PKV S V+ F    N      E     T++ F  +RKTL  +    L +   E + + 
Sbjct: 171 PKPKVNSAVVFFDFRENLEAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNF 230

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
                N+R + L +  + R+ +   +N
Sbjct: 231 FQFAQNIRPQQLDLVTYIRLADFYFNN 257


>gi|283851060|ref|ZP_06368344.1| dimethyladenosine transferase [Desulfovibrio sp. FW1012B]
 gi|283573456|gb|EFC21432.1| dimethyladenosine transferase [Desulfovibrio sp. FW1012B]
          Length = 289

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 130/260 (50%), Gaps = 12/260 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PK+ +GQNFL D N   +I  + G     TVIEIG G G L+  +L  G R  +V+EKD+
Sbjct: 32  PKRSLGQNFLQDPNTAARIVANLGITPADTVIEIGPGRGALSGHILDAGPRAYLVVEKDR 91

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               +   +++ HP    +   DAL++D+ +   ++  +++I NLPYNI + LL++ ISA
Sbjct: 92  D---LAARLAASHPG-ANVALADALRLDWSRIDRLAD-VKLIGNLPYNIASPLLWD-ISA 145

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 +     + Q EV  R+ A      YG L+      ++    F + P VF P PK
Sbjct: 146 GAC--LFRRGVFMVQHEVALRLAAAPGGRAYGALTAWVAGFSRVQYCFKVPPTVFRPQPK 203

Query: 201 VTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAGIE 256
           V S V+   P      P   ++L K+ +  F  RRK L   LKR+  +++       G++
Sbjct: 204 VDSAVVALTPLPAGERPADPKALSKLLKLLFSLRRKQLGHILKRVWDDDVAAYFAGQGLD 263

Query: 257 TNLRAENLSIEDFCRITNIL 276
           +  R ENLS +    +  +L
Sbjct: 264 SRDRPENLSPQQLSGLATLL 283


>gi|331694705|ref|YP_004330944.1| ribosomal RNA small subunit methyltransferase A [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949394|gb|AEA23091.1| Ribosomal RNA small subunit methyltransferase A [Pseudonocardia
           dioxanivorans CB1190]
          Length = 284

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 128/275 (46%), Gaps = 18/275 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLT 67
           ++ +     I P K +GQNF+ D N +++I +++  GS D   V+E+G G G+LT  LL 
Sbjct: 12  VRGLAERLGIRPTKKLGQNFVHDPNTVRRIVKAAELGSDD--VVVEVGPGLGSLTLALLP 69

Query: 68  LGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
             A  V  +E D     Q    + + +    +RL +   DA++V   +      P  I+A
Sbjct: 70  AVA-AVHAVEIDPVLAAQLPATVAEFAPGLADRLTVTTADAVRVRAAELAG-PVPTAIVA 127

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+G  +L + ++    P     L ++ Q EV +R+ A   S  YG  S    W   
Sbjct: 128 NLPYNVGVPVLLHLLA--ELPGIRRGL-VMVQAEVADRLAAPPGSKTYGVPSAKLAWFAD 184

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           A     +   VF+P P V S ++ F     P       +  +   AF +RRK LR +L  
Sbjct: 185 ARRAGPVPRAVFWPVPNVDSGLLAFTCRPAPSDVPRADVFAVVDAAFAQRRKALRSALAG 244

Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
             G     E  L  AGI+   RAE L I DF RI 
Sbjct: 245 WAGSPPAAEQALTTAGIDPLTRAERLGITDFARIA 279


>gi|15669218|ref|NP_248023.1| dimethyladenosine transferase [Methanocaldococcus jannaschii DSM
           2661]
 gi|27151565|sp|Q58435|RSMA_METJA RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|1591684|gb|AAB99033.1| dimethyladenosine transferase (ksgA) [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 275

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ FL+D N + K  ES+       V+EIG G G LT+ L    A+KV VIE D+
Sbjct: 4   PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDK 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139
              P    +   + N +EII  DALKVD  K  FN     +++ANLPY I + + F  I 
Sbjct: 63  SLEPYANKLKELY-NNIEIIWGDALKVDLNKLDFN-----KVVANLPYQISSPITFKLIK 116

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  ++   L++Q E  +R+ A++ +  YGRLSV    R    ++  + P  F+P P
Sbjct: 117 RG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKP 171

Query: 200 KVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241
           KV S ++   P+        E+      +  F  R K++R++L
Sbjct: 172 KVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKAL 214


>gi|307718556|ref|YP_003874088.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6192]
 gi|306532281|gb|ADN01815.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6192]
          Length = 283

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 17/267 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +++ + +   K  GQ+FL+  ++L +I ++     G  V EIG G G LT  LL  G
Sbjct: 10  MRELMARHGLSALKRFGQHFLVRDDVLGRIVQALDLHPGEQVWEIGPGIGALTAHLLDEG 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             +V+  E D+ F  IL++     P  L I++ D ++  +   +    P R++ NLPYN+
Sbjct: 70  V-EVVGFEIDRGFVSILREEFGGAP--LTIVEGD-VRDTWRTVYATRVPHRVVGNLPYNV 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++ +++      P       + QKEV ER+ A   S  YG LSV+     +  ++F 
Sbjct: 126 ATSIILDFLEGGLIVP----QVFMVQKEVAERMAASVGSSAYGALSVIVATFYRCELLFH 181

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRL---- 244
           + P  F P PKV S+V+   P  +P+P   +        + F  RRK L+  L R     
Sbjct: 182 VPPTAFHPRPKVWSSVLRLHPVASPVPREHIPPFLSFVWDLFRYRRKMLKNVLLRSPLAA 241

Query: 245 ----GGENLLHQAGIETNLRAENLSIE 267
               G  +LL + GI+  LRAE L ++
Sbjct: 242 RGVEGVVSLLERVGIDPTLRAEQLPLD 268


>gi|115372809|ref|ZP_01460115.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1]
 gi|115370290|gb|EAU69219.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1]
          Length = 286

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 137/287 (47%), Gaps = 19/287 (6%)

Query: 1   MTMNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           M    K H  S + IL  + +  K   GQNFL D   L+ IA++     G  V+E+G G 
Sbjct: 1   MADVRKGHVESPRDILKRHGLHAKYSWGQNFLGDERALQGIADALALRPGEPVVELGPGL 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118
           G+LT+ L   GA +V  +E+D+    +L+  +   P  + ++  +A  VDF +   +   
Sbjct: 61  GHLTRFLAATGA-QVTAVERDRDMISVLEKEAI--PG-VRVVAGNAATVDFAQAAGVPQ- 115

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           + ++ NLPY++ + +LF  +                QKEV ER+ A+  +  YG LSVL 
Sbjct: 116 VAVVGNLPYHLTSSILFQVLDQRAQ---VSRAVFTLQKEVVERLAAEPGTRDYGLLSVLL 172

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKT 236
           G       +F +   +F P PKV S V+      +P+   +  E   ++ + +F  RRKT
Sbjct: 173 GLHFGIEHLFTLESRLFHPPPKVDSAVVRLTRLASPLAPVVDEERFTRVVKASFAHRRKT 232

Query: 237 LRQSLKR----LGGENLLH---QAGIETNLRAENLSIEDFCRITNIL 276
           L  SLK        E  +H    AGI+   RAE LS ++F  +   L
Sbjct: 233 LLNSLKSDRTLATPEQYVHALEAAGIDPMRRAETLSPQEFAALERGL 279


>gi|284928980|ref|YP_003421502.1| dimethyladenosine transferase [cyanobacterium UCYN-A]
 gi|284809439|gb|ADB95144.1| dimethyladenosine transferase [cyanobacterium UCYN-A]
          Length = 274

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 138/270 (51%), Gaps = 15/270 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P+K  GQ++L D  +L++I +S+       V+EIG G G LT  LL      V  IE 
Sbjct: 2   IYPRKRFGQHWLKDNTVLERIIKSAHLTKIDKVLEIGPGTGILTSRLLP-EVSSVTAIEV 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVD-FEKF--FNISSPI-RIIANLPYNIGTRLL 134
           D+  +  L      +   L ++Q+D LK+D F +   +N+  P+ +++AN+PYNI   +L
Sbjct: 61  DRDLYEQLVK-KFHYCKNLLLLQEDILKIDLFTEISNYNLFWPMNKVVANIPYNITNPIL 119

Query: 135 FNWISADTWP---PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
              + + + P   P+ E + LL QKEV +RITA   +  YG LS    +      + D+ 
Sbjct: 120 EKLLGSVSEPYNLPY-EIIVLLVQKEVAKRITALPGNKMYGALSAKIQYLAHCNYICDVP 178

Query: 192 PHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---- 246
              F+P+PKV S +I   PH L+        L+K+    F  RRK L  +LK +      
Sbjct: 179 SKAFYPAPKVDSAIITLRPHILDSSVLNRPHLEKLINLGFSSRRKMLHNNLKSIMDIKYI 238

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              L +  ++  +RAENLSI  +  ++N L
Sbjct: 239 TEFLEKNNLDLKVRAENLSINQWIELSNYL 268


>gi|253799960|ref|YP_003032961.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN
           1435]
 gi|253321463|gb|ACT26066.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN
           1435]
          Length = 323

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 19/265 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL  GA  V  +E D 
Sbjct: 36  PRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGA-TVTAVEIDP 94

Query: 81  QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                L+   ++H     +RL ++  D L +  E     ++P  ++ANLPYN+    L +
Sbjct: 95  LLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL--AAAPTAVVANLPYNVAVPALLH 152

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    +T++ Q EV ER+ A+  S  YG  SV   +  +      +SP VF+
Sbjct: 153 LL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFW 209

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGE----- 247
           P P+V S ++    +  +P P      +++      AF +RRKT R +  +  G      
Sbjct: 210 PIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESA 269

Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272
           N L  A I+   R E LSI+DF R+
Sbjct: 270 NRLLAASIDPARRGETLSIDDFVRL 294


>gi|150402155|ref|YP_001329449.1| dimethyladenosine transferase [Methanococcus maripaludis C7]
 gi|166221676|sp|A6VFS2|RSMA_METM7 RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|150033185|gb|ABR65298.1| dimethyladenosine transferase [Methanococcus maripaludis C7]
          Length = 263

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 123/245 (50%), Gaps = 19/245 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ FL D N +KK    +   D   V+E+G G G LT+ L  + A+KV VIE D++ 
Sbjct: 5   KKLGQCFLKDKNFVKKAINRAELTDKDIVLEVGLGEGALTKELAKI-AKKVYVIELDERL 63

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141
            P   +I+S+  N +EII  DALKVD +   FN     +I+ANLPY I + + F ++  D
Sbjct: 64  KPFADEITSEFEN-VEIIWSDALKVDLKTLGFN-----KIVANLPYQISSPITFKFLEED 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E   L++Q E  +R+  + ++  Y RLSV   +      +  + P  F P P V
Sbjct: 118 -----FEVAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172

Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
            S ++             E   KK+ +  F  R +T++++L      +  H+ GIE N+ 
Sbjct: 173 NSAIVKLTKREPKYHVKDEEFFKKVLKAIFQHRNRTIKRALI-----DSSHEIGIERNIL 227

Query: 261 AENLS 265
            E L 
Sbjct: 228 KEILE 232


>gi|325853921|ref|ZP_08171437.1| dimethyladenosine transferase [Prevotella denticola CRIS 18C-A]
 gi|325484258|gb|EGC87188.1| dimethyladenosine transferase [Prevotella denticola CRIS 18C-A]
          Length = 274

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 134/270 (49%), Gaps = 13/270 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL+I  +IA++  +   I V+EIG G G LTQ L+    R+V  +E 
Sbjct: 4   VKPKKNLGQHFLTDLSIAHRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D +    L +   + P  R  II +D L++D  + F+      +  N PY+I +++ F  
Sbjct: 63  DAESVAYLYE---KFPRLRENIIGEDFLRMDLSQIFD-GRQFVLTGNYPYDISSQIFFKM 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P     T + Q+EV  R+ A   S  YG LSVL         +F +  +VF P
Sbjct: 119 LDYKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLMQAWYDVEYLFTVDENVFNP 175

Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    + +  + C     K++ +  F +RRK LR SL++L           E
Sbjct: 176 PPKVKSAVIRMTRNDVTDLGCDERLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPTDGFYE 235

Query: 257 TNL---RAENLSIEDFCRITNILTDNQDIA 283
            ++   R E LSI     +TN++ +  ++A
Sbjct: 236 QDIMTKRPEQLSIPQLVGLTNMVAEQLELA 265


>gi|15608150|ref|NP_215526.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Rv]
 gi|15840438|ref|NP_335475.1| dimethyladenosine transferase [Mycobacterium tuberculosis CDC1551]
 gi|31792201|ref|NP_854694.1| dimethyladenosine transferase [Mycobacterium bovis AF2122/97]
 gi|121636939|ref|YP_977162.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148660792|ref|YP_001282315.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra]
 gi|148822220|ref|YP_001286974.1| dimethyladenosine transferase [Mycobacterium tuberculosis F11]
 gi|167968132|ref|ZP_02550409.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra]
 gi|215402826|ref|ZP_03415007.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987]
 gi|215410613|ref|ZP_03419421.1| dimethyladenosine transferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|215429871|ref|ZP_03427790.1| dimethyladenosine transferase [Mycobacterium tuberculosis EAS054]
 gi|218752682|ref|ZP_03531478.1| dimethyladenosine transferase [Mycobacterium tuberculosis GM 1503]
 gi|219556877|ref|ZP_03535953.1| dimethyladenosine transferase [Mycobacterium tuberculosis T17]
 gi|224989411|ref|YP_002644098.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|254231305|ref|ZP_04924632.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis C]
 gi|254363926|ref|ZP_04979972.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549996|ref|ZP_05140443.1| dimethyladenosine transferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185921|ref|ZP_05763395.1| dimethyladenosine transferase [Mycobacterium tuberculosis CPHL_A]
 gi|260200039|ref|ZP_05767530.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46]
 gi|260204228|ref|ZP_05771719.1| dimethyladenosine transferase [Mycobacterium tuberculosis K85]
 gi|289442431|ref|ZP_06432175.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46]
 gi|289446592|ref|ZP_06436336.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555207|ref|ZP_06444417.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN
           605]
 gi|289568987|ref|ZP_06449214.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T17]
 gi|289573650|ref|ZP_06453877.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis K85]
 gi|289744746|ref|ZP_06504124.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987]
 gi|289753071|ref|ZP_06512449.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           EAS054]
 gi|289761146|ref|ZP_06520524.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis GM
           1503]
 gi|294995200|ref|ZP_06800891.1| dimethyladenosine transferase [Mycobacterium tuberculosis 210]
 gi|297633537|ref|ZP_06951317.1| dimethyladenosine transferase [Mycobacterium tuberculosis KZN 4207]
 gi|297730522|ref|ZP_06959640.1| dimethyladenosine transferase [Mycobacterium tuberculosis KZN R506]
 gi|298524506|ref|ZP_07011915.1| dimethyladenosine transferase dimethyltransferase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775146|ref|ZP_07413483.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu001]
 gi|306781939|ref|ZP_07420276.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu002]
 gi|306783706|ref|ZP_07422028.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu003]
 gi|306788061|ref|ZP_07426383.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu004]
 gi|306792394|ref|ZP_07430696.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu005]
 gi|306796797|ref|ZP_07435099.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu006]
 gi|306806862|ref|ZP_07443530.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu007]
 gi|306971253|ref|ZP_07483914.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu010]
 gi|307078981|ref|ZP_07488151.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu011]
 gi|307083542|ref|ZP_07492655.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu012]
 gi|313657851|ref|ZP_07814731.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Mycobacterium tuberculosis KZN V2475]
 gi|54037708|sp|P66661|RSMA_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|54041549|sp|P66660|RSMA_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221680|sp|A1KHE8|RSMA_MYCBP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221681|sp|A5U153|RSMA_MYCTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807874|sp|C1AM01|RSMA_MYCBT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|2052147|emb|CAB08137.1| PROBABLE DIMETHYLADENOSINE TRANSFERASE KSGA
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase) [Mycobacterium tuberculosis H37Rv]
 gi|13880609|gb|AAK45289.1| dimethyladenosine transferase [Mycobacterium tuberculosis CDC1551]
 gi|31617789|emb|CAD93898.1| PROBABLE DIMETHYLADENOSINE TRANSFERASE KSGA
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase) [Mycobacterium bovis AF2122/97]
 gi|121492586|emb|CAL71054.1| Probable dimethyladenosine transferase ksgA [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124600364|gb|EAY59374.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis C]
 gi|134149440|gb|EBA41485.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148504944|gb|ABQ72753.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra]
 gi|148720747|gb|ABR05372.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis F11]
 gi|224772524|dbj|BAH25330.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289415350|gb|EFD12590.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46]
 gi|289419550|gb|EFD16751.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289439839|gb|EFD22332.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN
           605]
 gi|289538081|gb|EFD42659.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis K85]
 gi|289542741|gb|EFD46389.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T17]
 gi|289685274|gb|EFD52762.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987]
 gi|289693658|gb|EFD61087.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           EAS054]
 gi|289708652|gb|EFD72668.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis GM
           1503]
 gi|298494300|gb|EFI29594.1| dimethyladenosine transferase dimethyltransferase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216296|gb|EFO75695.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu001]
 gi|308325330|gb|EFP14181.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu002]
 gi|308331489|gb|EFP20340.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu003]
 gi|308335295|gb|EFP24146.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu004]
 gi|308339103|gb|EFP27954.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu005]
 gi|308342775|gb|EFP31626.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu006]
 gi|308346684|gb|EFP35535.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu007]
 gi|308359187|gb|EFP48038.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu010]
 gi|308363121|gb|EFP51972.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu011]
 gi|308366753|gb|EFP55604.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu012]
 gi|323720511|gb|EGB29593.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904763|gb|EGE51696.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           W-148]
 gi|328459703|gb|AEB05126.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN
           4207]
          Length = 317

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 19/265 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL  GA  V  +E D 
Sbjct: 30  PRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGA-TVTAVEIDP 88

Query: 81  QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                L+   ++H     +RL ++  D L +  E     ++P  ++ANLPYN+    L +
Sbjct: 89  LLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL--AAAPTAVVANLPYNVAVPALLH 146

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    +T++ Q EV ER+ A+  S  YG  SV   +  +      +SP VF+
Sbjct: 147 LL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFW 203

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGE----- 247
           P P+V S ++    +  +P P      +++      AF +RRKT R +  +  G      
Sbjct: 204 PIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESA 263

Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272
           N L  A I+   R E LSI+DF R+
Sbjct: 264 NRLLAASIDPARRGETLSIDDFVRL 288


>gi|308376581|ref|ZP_07439351.2| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu008]
 gi|308377580|ref|ZP_07479724.2| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu009]
 gi|308350599|gb|EFP39450.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu008]
 gi|308355232|gb|EFP44083.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu009]
          Length = 320

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 19/265 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL  GA  V  +E D 
Sbjct: 33  PRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGA-TVTAVEIDP 91

Query: 81  QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                L+   ++H     +RL ++  D L +  E     ++P  ++ANLPYN+    L +
Sbjct: 92  LLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL--AAAPTAVVANLPYNVAVPALLH 149

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    +T++ Q EV ER+ A+  S  YG  SV   +  +      +SP VF+
Sbjct: 150 LL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFW 206

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGE----- 247
           P P+V S ++    +  +P P      +++      AF +RRKT R +  +  G      
Sbjct: 207 PIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESA 266

Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272
           N L  A I+   R E LSI+DF R+
Sbjct: 267 NRLLAASIDPARRGETLSIDDFVRL 291


>gi|327313931|ref|YP_004329368.1| dimethyladenosine transferase [Prevotella denticola F0289]
 gi|326944358|gb|AEA20243.1| dimethyladenosine transferase [Prevotella denticola F0289]
          Length = 279

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 134/270 (49%), Gaps = 13/270 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL+I  +IA++  +   I V+EIG G G LTQ L+    R+V  +E 
Sbjct: 4   VKPKKNLGQHFLTDLSIAHRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D +    L +   + P  R  II +D L++D  + F+      +  N PY+I +++ F  
Sbjct: 63  DAESVAYLYE---KFPRLRENIIGEDFLRMDLSQIFD-GRQFVLTGNYPYDISSQIFFKM 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P     T + Q+EV  R+ A   S  YG LSVL         +F +  +VF P
Sbjct: 119 LDYKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLMQAWYDVEYLFTVDENVFNP 175

Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    + +  + C     K++ +  F +RRK LR SL++L           E
Sbjct: 176 PPKVKSAVIRMTRNDVTDLGCDERLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPADGFYE 235

Query: 257 TNL---RAENLSIEDFCRITNILTDNQDIA 283
            ++   R E LSI     +TN++ +  ++A
Sbjct: 236 QDIMTKRPEQLSIPQLVGLTNMVAEQLELA 265


>gi|289749539|ref|ZP_06508917.1| LOW QUALITY PROTEIN: dimethyladenosine transferase ksgA
           [Mycobacterium tuberculosis T92]
 gi|289690126|gb|EFD57555.1| LOW QUALITY PROTEIN: dimethyladenosine transferase ksgA
           [Mycobacterium tuberculosis T92]
          Length = 318

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 19/265 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL  GA  V  +E D 
Sbjct: 30  PRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGA-TVTAVEIDP 88

Query: 81  QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                L+   ++H     +RL ++  D L +  E     ++P  ++ANLPYN+    L +
Sbjct: 89  LLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL--AAAPTAVVANLPYNVAVPALLH 146

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    +T++ Q EV ER+ A+  S  YG  SV   +  +      +SP VF+
Sbjct: 147 LL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFW 203

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGE----- 247
           P P+V S ++    +  +P P      +++      AF +RRKT R +  +  G      
Sbjct: 204 PIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESA 263

Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272
           N L  A I+   R E LSI+DF R+
Sbjct: 264 NRLLAASIDPARRGETLSIDDFVRL 288


>gi|209519022|ref|ZP_03267830.1| dimethyladenosine transferase [Burkholderia sp. H160]
 gi|209500534|gb|EEA00582.1| dimethyladenosine transferase [Burkholderia sp. H160]
          Length = 280

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 19/267 (7%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H   + +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L   L      
Sbjct: 10  HQGHLARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEAP 69

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+     LK    +  + LE+   DAL+ DF    ++++P     +RI+ NLPY
Sbjct: 70  LHAVELDRDLIGRLK---KKFGDLLELHAGDALEFDFG---SLAAPGEKASLRIVGNLPY 123

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI + LLF+     T+         + Q EV ER+ A+  +  + RLSV+  +R      
Sbjct: 124 NISSPLLFHLA---TFADRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQ 180

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P PKV S ++  IP+ L+ +P   E+ L ++   AF +RRK LR +L  L 
Sbjct: 181 LDVPPEAFQPPPKVDSAIVRMIPYELHELPVVDENVLGEVVTAAFSQRRKMLRNTLGALR 240

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRI 272
                   G +   RAE++ + ++  +
Sbjct: 241 DTVDFDALGFDLQRRAEDVPVAEYVSV 267


>gi|310823436|ref|YP_003955794.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1]
 gi|309396508|gb|ADO73967.1| Dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1]
          Length = 278

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 134/277 (48%), Gaps = 17/277 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + IL  + +  K   GQNFL D   L+ IA++     G  V+E+G G G+LT+ L   
Sbjct: 3   SPRDILKRHGLHAKYSWGQNFLGDERALQGIADALALRPGEPVVELGPGLGHLTRFLAAT 62

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GA +V  +E+D+    +L+  +   P  + ++  +A  VDF +   +   + ++ NLPY+
Sbjct: 63  GA-QVTAVERDRDMISVLEKEAI--PG-VRVVAGNAATVDFAQAAGVPQ-VAVVGNLPYH 117

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + + +LF  +                QKEV ER+ A+  +  YG LSVL G       +F
Sbjct: 118 LTSSILFQVLDQRAQ---VSRAVFTLQKEVVERLAAEPGTRDYGLLSVLLGLHFGIEHLF 174

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKR--- 243
            +   +F P PKV S V+      +P+   +  E   ++ + +F  RRKTL  SLK    
Sbjct: 175 TLESRLFHPPPKVDSAVVRLTRLASPLAPVVDEERFTRVVKASFAHRRKTLLNSLKSDRT 234

Query: 244 -LGGENLLH---QAGIETNLRAENLSIEDFCRITNIL 276
               E  +H    AGI+   RAE LS ++F  +   L
Sbjct: 235 LATPEQYVHALEAAGIDPMRRAETLSPQEFAALERGL 271


>gi|314929244|gb|EFS93075.1| dimethyladenosine transferase [Propionibacterium acnes HL044PA1]
 gi|314972363|gb|EFT16460.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA3]
 gi|328908355|gb|EGG28114.1| dimethyladenosine transferase [Propionibacterium sp. P08]
          Length = 298

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 139/286 (48%), Gaps = 26/286 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLL 66
           S++ I     + P K  GQNF+ D N +++I   +  GS D   VIE+G G G+LT  LL
Sbjct: 11  SIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLALVGSED--RVIEVGPGLGSLTLGLL 68

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRII 122
             GA +V+ +E D+     L D I+ + P    RL+++  DAL V   K    + P  ++
Sbjct: 69  ETGA-QVVAVEIDETLANQLPDTIAERMPEAAERLDVVLSDALDV---KAIPGAEPTALV 124

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + ++     P W +  ++ Q EV +R+ A   S  YG  S    W  
Sbjct: 125 ANLPYNVAVPVLLHMLA---MCPQWSTGVVMVQSEVADRLVAAPGSKIYGIPSAKLAWYA 181

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-----IPCCLES-LKKITQEAFGKRRKT 236
           +AT + ++ P VF+P P V S ++       P      P    S + ++   AF  RRK 
Sbjct: 182 EATRVGNVPPTVFWPVPNVDSGLVRITRRRPPQIDGRDPHATRSQVFRVVDAAFASRRKM 241

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LR +L  L G       L+  AGI+   R E L I D  R+   L 
Sbjct: 242 LRSALAGLCGGSTAASELITAAGIDPTARGEALDIADLARVAEALA 287


>gi|260910119|ref|ZP_05916796.1| dimethyladenosine transferase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635623|gb|EEX53636.1| dimethyladenosine transferase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 267

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 29/269 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL I ++IA++  +   + ++E+G G G LTQ L T   R + V+E D 
Sbjct: 6   PKKHLGQHFLTDLGIARRIADTVDACPELPILEVGPGMGVLTQYLAT-KERPLRVVEIDT 64

Query: 81  QF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           +        FP+L +          ++ +D L++D +  F+   P  +  N PY+I +++
Sbjct: 65  ESVEYLHKNFPLLAE---------NVLGEDFLRMDLDGVFS-GQPFVLTGNYPYDISSQI 114

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     T + Q+EV  RI +Q  +  YG LSVL         +F +   
Sbjct: 115 FFKMLDNKHLIP---CCTGMIQREVALRIASQPGTKAYGILSVLIQAWYDVEYLFTVDET 171

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL-----GGE 247
           VF P PKV S VI    +      C E+L K++ +  F +RRK LR SL++L        
Sbjct: 172 VFNPPPKVKSAVIRMTRNAVENLGCNEALFKRVVKTVFNQRRKMLRVSLRQLFAGMPASP 231

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
               Q       R E LS+ +F ++TN++
Sbjct: 232 EFYAQEMF--TRRPEQLSVAEFVQLTNMV 258


>gi|326383797|ref|ZP_08205482.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326197561|gb|EGD54750.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 311

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 23/278 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N +++I  +SG      V+E+G G G+LT  LL   
Sbjct: 29  IRALAAELDVRPTKTLGQNFVHDANTVRRIVTASGIGADDVVLEVGPGLGSLTLALLAEA 88

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPNR---LEIIQDDALKV---DFEKFFNISSPIRII 122
            R V+ +E D++    L + I+   P +    +++  DAL V   D  +     +P  ++
Sbjct: 89  GR-VVAVEIDRKLAARLPRTIAEFAPGQAANFDVVTADALGVLPGDLPQ-----TPTALV 142

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + ++   +P    +L ++ Q EV +R+ A      YG  SV   +  
Sbjct: 143 ANLPYNVAVPVLLHLMA--QFPTIRTALVMV-QAEVADRLAATPGGRIYGVPSVKARFFG 199

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
                  I  HVF+P PK+ S ++           P        +   AF +RRKTLR +
Sbjct: 200 DVARAGSIGKHVFWPEPKIESGLVRIDRRDAFGTDPALRSETFAVIDAAFAQRRKTLRSA 259

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           L    G     E LL  A I+  LR E  +++DF R+ 
Sbjct: 260 LSSWAGSAPHAEELLRAAEIDPGLRGERCTVDDFVRLA 297


>gi|167901379|ref|ZP_02488584.1| dimethyladenosine transferase [Burkholderia pseudomallei NCTC
           13177]
          Length = 275

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 136/275 (49%), Gaps = 25/275 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT----QMLLTLGAR 71
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT      L T G+ 
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS- 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126
            +  +E D+    ++  +  +    LE+   DAL  DF    +I+ P     +RII NLP
Sbjct: 66  PLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGDEPSLRIIGNLP 119

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     
Sbjct: 120 YNISSPLLFHLMS---FAPVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
           + D+ P  F P PKV S ++  IPH  + +P    + L ++   AF +RRK LR +L   
Sbjct: 177 LIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLG-- 234

Query: 245 GGENLL--HQAGIETNLRAENLSIEDFCRITNILT 277
           G  +L+     G +   RAE++ ++++ R+   + 
Sbjct: 235 GYRDLVDFDALGFDLARRAEDVGVDEYVRVAQAVA 269


>gi|27151572|sp|Q8PU18|RSMA_METMA RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
          Length = 271

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 27/280 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +++IL  Y I    +  Q+FL+D   L +I  ++      TV+EIGAG GNLT+ L    
Sbjct: 2   VRSILKKYNIKGGTF-DQHFLIDAGYLDRIVAAAELSPQDTVLEIGAGIGNLTERL-ARR 59

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI +E D     +L D      N +EII  DALKVDF +F       ++++NLPY+I
Sbjct: 60  AKKVIAVELDPALVSVLHDRFDAAEN-IEIIAGDALKVDFPEF------DKVVSNLPYSI 112

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F  +        ++   L++Q E   R+ +      Y RL++ T +   A+++  
Sbjct: 113 SSEITFKLLRHK-----FKLGVLMYQYEFAVRMVSPPGCKDYSRLTIDTCYFADASIVMK 167

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN 248
           +    F P+P+V S VI  IP   P     E+   +     F +RRK LR ++  L   +
Sbjct: 168 VPKGAFQPAPEVDSAVIKLIPRPAPFEVRDETFFLQFVAAVFSQRRKKLRNAI--LNTSS 225

Query: 249 LLHQAGIE----------TNLRAENLSIEDFCRITNILTD 278
           LL    I+           N RAE+L+ E+   + N++ D
Sbjct: 226 LLKIPDIKEIVSQLPEDFMNKRAEDLTPEELASVANMIFD 265


>gi|294629824|ref|ZP_06708384.1| dimethyladenosine transferase [Streptomyces sp. e14]
 gi|292833157|gb|EFF91506.1| dimethyladenosine transferase [Streptomyces sp. e14]
          Length = 296

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 135/276 (48%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++G      V+E+G G G+LT  LL   
Sbjct: 6   VRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPEDVVVEVGPGLGSLTLALLE-A 64

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V+ +E D      L   ++++ P   +R  ++  DA+ V         +P  ++ANL
Sbjct: 65  AERVVAVEIDDVLAGALPATVAARMPERADRFALVHSDAMHV---AELPGPAPTALVANL 121

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  DT+P    +L ++ Q EV +R+ A   S  YG  SV   W  +  
Sbjct: 122 PYNVAVPVLLHML--DTFPSIERTL-VMVQAEVADRLAAAPGSKVYGVPSVKANWYAEVK 178

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238
               I  +VF+P+P V S ++  +    P+       +   +   AF +RRKTLR     
Sbjct: 179 RAGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTSATKREVFAVVDAAFAQRRKTLRAALAG 238

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +      E  L  AG+    R E+L++E+F RI  
Sbjct: 239 WAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAE 274


>gi|13358166|ref|NP_078440.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|6899612|gb|AAF31015.1|AE002158_13 dimethyladenosine transferase [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
          Length = 257

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 134/263 (50%), Gaps = 17/263 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           MGQNFLL  NI  KI + +       ++EIG G G +T++L+      +I IE D++ + 
Sbjct: 1   MGQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEILVQ-KTNILIAIELDKRLYA 59

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI---RIIANLPYNIGTRLLFNWI 138
            LK  +    +   II +D L VD +     +N +  I   +++ANLPY I ++++   I
Sbjct: 60  HLK--TYIKTSNFHIINNDVLCVDLDNLILDYNNTQKIQKIKVVANLPYAISSKIVLKII 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            +      +    ++ QKE+ ERI A+ N+  Y   +VL     K  ++F+++   F P 
Sbjct: 118 QSKLINDAY----IMVQKEMAERIGAKVNTRGYNAFTVLVQLFCKTKILFEVNAKEFHPQ 173

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----G 254
           PKV S VIH     N +   +E L K  +  F  +RK L+ +L  +    +++Q      
Sbjct: 174 PKVQSAVIHLENLHNSVNFNIEELGKFLRICFLNKRKKLKNNLSNIYDIKIINQMFIDYN 233

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           ++ NLRAEN+  + F ++ N L 
Sbjct: 234 LDMNLRAENIEPKMFLKLFNYLN 256


>gi|284161199|ref|YP_003399822.1| dimethyladenosine transferase [Archaeoglobus profundus DSM 5631]
 gi|284011196|gb|ADB57149.1| dimethyladenosine transferase [Archaeoglobus profundus DSM 5631]
          Length = 251

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 111/217 (51%), Gaps = 14/217 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L+D   L KI   +       V+E+G G GNLT++LL    +KV  IE D +F
Sbjct: 5   KSKGQHILVDKKYLYKIVRYADLSYNDVVLEVGCGLGNLTRLLLR-SVKKVYGIEIDSRF 63

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL++  +      R  +I+ DALKVDF KF       + +AN+PY I + L F  +  
Sbjct: 64  CKILREKFADEIESGRFVLIEGDALKVDFPKF------DKFVANIPYQISSPLTFKLLKH 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D     ++   + +QKE  ER+ A++ S  YGRLSV+     +A ++  I P  F P PK
Sbjct: 118 D-----FKLAVVTYQKEFAERLVAREGSKKYGRLSVVAKAYCRAEILDIIPPKAFRPRPK 172

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           V S ++   P    +    E  + + + AF +RRK  
Sbjct: 173 VESAIVRIFPEPEVVVENKEIFEDLVRFAFSRRRKKF 209


>gi|186475168|ref|YP_001856638.1| dimethyladenosine transferase [Burkholderia phymatum STM815]
 gi|226729765|sp|B2JCX3|RSMA_BURP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|184191627|gb|ACC69592.1| dimethyladenosine transferase [Burkholderia phymatum STM815]
          Length = 276

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 125/264 (47%), Gaps = 19/264 (7%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H     +K  GQNFL+DL I+  I +      G  ++EIG G G LT+ L   L      
Sbjct: 9   HQGHFARKRFGQNFLVDLGIIDSIVDVIRPQRGERMVEIGPGLGALTEPLVERLATPEAP 68

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNIG 130
           +  +E D+     LK    +  N LE+ + DAL  DF           +RI+ NLPYNI 
Sbjct: 69  LHAVELDRDLIGRLK---KKFGNLLELHEGDALAFDFGSLAGEGDKPTLRIVGNLPYNIS 125

Query: 131 TRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           + LLF+  +      F E +     + Q EV ER+ A+  S  + RLSV+  +R     +
Sbjct: 126 SPLLFHLAT------FAERVIDQHFMLQNEVVERMVAEPGSKAFSRLSVMLQYRYVIDKL 179

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P PKV S ++  IP+  + +P   E  L ++   AF +RRK LR +L    
Sbjct: 180 LDVPPESFQPPPKVDSAIVRMIPYAPHELPAVDEIKLGEVVTAAFSQRRKMLRNTLSTYR 239

Query: 246 GENLLHQAGIETNLRAENLSIEDF 269
                   G +   RAE++ + ++
Sbjct: 240 DSVDFEALGFDLQRRAEDVPVAEY 263


>gi|294872243|ref|XP_002766218.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239866886|gb|EEQ98935.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 354

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 118/222 (53%), Gaps = 13/222 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+ L +  IL KI E+S      TV+EIG G GNLT  LL L A+KV+ +E D +
Sbjct: 50  QKKFGQHLLKNPGILDKIIEASDIKSTDTVLEIGPGTGNLTMRLLEL-AKKVVALEIDPR 108

Query: 82  FFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               +K   +Q   R  L++I+ DALK  F   F++      +ANLPY I +   F  ++
Sbjct: 109 MAAEVKK-RAQTAGRMNLKVIEGDALKTQFP-VFDVC-----VANLPYQISSPFTFKLLA 161

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P +    ++FQKE GER+ A+    +YGRL++     +K T + ++S   F P P
Sbjct: 162 ---HRPVFRCGVIMFQKEFGERLVARVGEDNYGRLAINCQLFSKVTRVCNVSKGSFNPPP 218

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           +V S ++ F+ H +PI         + + AF ++ KTL  S 
Sbjct: 219 EVDSMIVKFVLHKDPINVDFPEFDGLLRVAFTRKNKTLHSSF 260


>gi|258645613|ref|ZP_05733082.1| dimethyladenosine transferase [Dialister invisus DSM 15470]
 gi|260402971|gb|EEW96518.1| dimethyladenosine transferase [Dialister invisus DSM 15470]
          Length = 286

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 133/272 (48%), Gaps = 13/272 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L  + I  K  +GQNFL+  +I+ +IA ++   +G  V+EIGAG G LTQ L   G
Sbjct: 12  VRYVLQRFGIRAKHRLGQNFLVRPDIVAEIAAAAELAEGAFVLEIGAGIGTLTQALAETG 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V   E D+    +L      + N + II +D LK + ++     +     ANLPY I
Sbjct: 72  A-NVTTFEIDKSLENVLTHTLEAY-NNVHIIYEDVLKANLKEILG-DNNWHAAANLPYYI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +L   I ++     +     + QKEV +RI A+  S  YG L++   +      + D
Sbjct: 129 TTPILLYLIQSELPISLF---VFMMQKEVADRILAKAGSKDYGALTLAVQFDCTVERVMD 185

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-- 245
           I P  F P P VTSTV+       P     +     ++ +  FG+RRK    ++K  G  
Sbjct: 186 IPPAAFLPHPAVTSTVLKIRRRKEPAVKVADRKLFFRLVKMGFGQRRKVFTNAMKSGGIS 245

Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITN 274
              G+ +L +AGI+   R E  S+E++  + N
Sbjct: 246 MELGKKILERAGIDGGRRGETFSMEEYAALAN 277


>gi|254468186|ref|ZP_05081592.1| dimethyladenosine transferase [beta proteobacterium KB13]
 gi|207086996|gb|EDZ64279.1| dimethyladenosine transferase [beta proteobacterium KB13]
          Length = 253

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 132/264 (50%), Gaps = 16/264 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL+D  I+K I +     +    +EIG G G LT  L     + + +IE 
Sbjct: 2   IKAKKKFGQNFLIDNQIIKLIVDEIKFSETNKYLEIGPGMGALTSELQK-NTKNLDLIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKV--DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D     IL   S++  +  +I + D L    +F + +N+     ++ NLPY I T ++F 
Sbjct: 61  DPDMIKIL---SAKINSTTQIFEGDVLGFSDNFFEGYNV-----VLGNLPYYIATEIIFR 112

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           +I  +      + L  + QKEV +R+ A+  S     L+ L G+  +A   FDI P  F 
Sbjct: 113 FIPINNV----DILYFMVQKEVADRLVAKTGSKENSILTNLLGFNFRAEKCFDIKPESFD 168

Query: 197 PSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           PSPKVTS+ I    H + I        K+I +E+F  +RK L+ +LK +   N      I
Sbjct: 169 PSPKVTSSFIKLTRHRDYINEIRYVDYKRIIKESFKFKRKNLKNNLKGVLNLNDFENLEI 228

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
               RAE+LSIEDF +IT  +  N
Sbjct: 229 LPTNRAEDLSIEDFIKITKYVITN 252


>gi|83816376|ref|YP_446299.1| dimethyladenosine transferase [Salinibacter ruber DSM 13855]
 gi|119365670|sp|Q2S0I2|RSMA_SALRD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83757770|gb|ABC45883.1| dimethyladenosine transferase [Salinibacter ruber DSM 13855]
          Length = 296

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 128/264 (48%), Gaps = 11/264 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PK+ +GQNFL D N+ +KI  +  +     V+E+GAG G LT+ L     R +  +E D+
Sbjct: 36  PKQSLGQNFLHDPNMAEKIVGTLTAPPEAHVVEVGAGTGVLTERLAERHDR-LTALEIDE 94

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139
           +   +L++   +     ++ + D  + D+    +    P+R+I+N PY + + +LF  + 
Sbjct: 95  RAVEVLRERVPE----ADVRETDVRETDWAALADEKGGPLRVISNTPYYLTSPILFALLG 150

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                       L  QKEV ERI A+ ++  YG LSVL     + T+ F + P VF P P
Sbjct: 151 QRDC---LAEAVLTMQKEVAERIVAEPSTKAYGILSVLLQLFAEPTLCFTVPPQVFSPQP 207

Query: 200 KVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            VTS V  I F P   P     +  ++  + AF +RRK LR SL     E  +       
Sbjct: 208 DVTSAVVRIRFGPDTEPEDLHFDDARRYVRAAFNQRRKMLRNSLSAWTKEQDVGFPNDWG 267

Query: 258 NLRAENLSIEDFCRITNILTDNQD 281
             RAE L+ ++F  +   L  + D
Sbjct: 268 RKRAEALTPDEFATLARHLDAHAD 291


>gi|212696052|ref|ZP_03304180.1| hypothetical protein ANHYDRO_00588 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676961|gb|EEB36568.1| hypothetical protein ANHYDRO_00588 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 255

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 121/237 (51%), Gaps = 9/237 (3%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            ++K I   Y     K +GQNFL+D N + KI + S  + G  ++EIG G G ++Q +  
Sbjct: 8   KTIKLIQDLYGFKFTKSLGQNFLVDKNFVDKIIDLS-EVSGENILEIGPGIGTISQEMAK 66

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP-IRIIAN 124
              +K++VIE D+   PILKD   +  N ++II  D LK D +K    N S    ++++N
Sbjct: 67  -TCKKLVVIEIDKTLIPILKDNLGEFSN-VDIINADILKTDLKKIIKENFSGEDFKVVSN 124

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T ++      D  P   + +T++ QKEV +R+ A + S  Y  LSV   +  + 
Sbjct: 125 LPYYITTPIIEKLFEED-LP--CKDMTIMVQKEVADRMKADEKSKDYSSLSVFIKYYAEI 181

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           T  F +   VF P PK+ S V+     L         L  I +  F KRRKT+  SL
Sbjct: 182 TGQFKVPKSVFMPQPKIDSQVLKLNLRLYDEKVNRNILFSIVRAGFNKRRKTILNSL 238


>gi|325971816|ref|YP_004248007.1| ribosomal RNA small subunit methyltransferase A [Spirochaeta sp.
           Buddy]
 gi|324027054|gb|ADY13813.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta sp.
           Buddy]
          Length = 292

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 19/285 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  +L   ++   K  GQNFL+   + +KI          TV E+G G G +T +LL  
Sbjct: 12  AITALLKEEELSMSKKFGQNFLISRAVREKIVALLDVQQAQTVWEVGPGIGAITSLLLEK 71

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           G  KV   E D  F  IL + +        +I  DALK          +P R+  NLPYN
Sbjct: 72  GT-KVTAFEIDHGFCRILSEQAFADELSFRLIAGDALKTLPLTLGQEGAPDRLCGNLPYN 130

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           +G+ ++   + +D  PP    +    QKEV +R+ A  +S  +   S+L     +    F
Sbjct: 131 VGSVVIAKVLESDYRPPV---MVFTLQKEVVDRLCASPDSKDWSSFSMLAQMDYEVKPAF 187

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESL-KKITQEAFGKRRKTLRQSL--- 241
            IS   F+P PKVTS+ + F   L P   +P  L  L   + ++ F +RRKT + +L   
Sbjct: 188 SISSGSFYPPPKVTSSTVVFT--LRPQSLVPSQLRHLFLLVIRDLFAQRRKTAKNNLLSG 245

Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                  + G E LL ++G++ + RAE L   DF  ++  L+  Q
Sbjct: 246 KIAAQVGKEGVEELLRRSGVDASKRAEALVWSDFIALSESLSSYQ 290


>gi|167822806|ref|ZP_02454277.1| dimethyladenosine transferase [Burkholderia pseudomallei 9]
 gi|167892894|ref|ZP_02480296.1| dimethyladenosine transferase [Burkholderia pseudomallei 7894]
 gi|226196710|ref|ZP_03792290.1| dimethyladenosine transferase [Burkholderia pseudomallei Pakistan
           9]
 gi|254187683|ref|ZP_04894195.1| dimethyladenosine transferase [Burkholderia pseudomallei Pasteur
           52237]
 gi|254296205|ref|ZP_04963662.1| dimethyladenosine transferase [Burkholderia pseudomallei 406e]
 gi|157805832|gb|EDO83002.1| dimethyladenosine transferase [Burkholderia pseudomallei 406e]
 gi|157935363|gb|EDO91033.1| dimethyladenosine transferase [Burkholderia pseudomallei Pasteur
           52237]
 gi|225931241|gb|EEH27248.1| dimethyladenosine transferase [Burkholderia pseudomallei Pakistan
           9]
          Length = 275

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 135/276 (48%), Gaps = 27/276 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT----QMLLTLGAR 71
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT      L T G+ 
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS- 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126
            +  +E D+    ++  +  +    LE+   DAL  DF    +I+ P     +RII NLP
Sbjct: 66  PLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGDEPSLRIIGNLP 119

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     
Sbjct: 120 YNISSPLLFHLMS---FAPIVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
           + D+ P  F P PKV S ++  IPH  + +P    + L ++   AF +RRK LR +   L
Sbjct: 177 LIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNT---L 233

Query: 245 GGENLL---HQAGIETNLRAENLSIEDFCRITNILT 277
           GG   L      G +   RAE++ ++++ R+   + 
Sbjct: 234 GGYRDLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 269


>gi|255327324|ref|ZP_05368398.1| dimethyladenosine transferase [Rothia mucilaginosa ATCC 25296]
 gi|255295604|gb|EET74947.1| dimethyladenosine transferase [Rothia mucilaginosa ATCC 25296]
          Length = 290

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 136/276 (49%), Gaps = 20/276 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     I P K +GQNF++D N +++I  ++      TV+E+G G G+LT  +L   
Sbjct: 12  IRELAEMLGIRPTKTLGQNFVIDPNTIRRIVNAAEISPEETVLEVGPGLGSLTLGILD-A 70

Query: 70  ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIAN 124
           A+ ++ +E D    QQ    ++    +    ++++  DALKV +  +     +P  ++AN
Sbjct: 71  AKDMVAVEIDPPLAQQLPHTIEKFRPEKGGDIDVVLMDALKVTELPR-----TPDALVAN 125

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L +  +   +P    +L ++ Q EV +R++A   S  YG  SV   W  + 
Sbjct: 126 LPYNVAVPVLLHLFA--QFPSIRHALVMV-QDEVADRLSATPGSKIYGVPSVKANWYAEV 182

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243
                I  +VF+P+PK+ S ++ F     P+      L   I   AF +RRKTLR +L  
Sbjct: 183 YKAGVIGKNVFWPAPKINSGLVGFRMREEPLSTVDRDLVFTIVDAAFAQRRKTLRAALSS 242

Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
             G     E +L  AGI    R E L I  F RI  
Sbjct: 243 WAGSGARAEQILVAAGIAPTERGEKLDIHGFIRIAE 278


>gi|254181754|ref|ZP_04888351.1| dimethyladenosine transferase [Burkholderia pseudomallei 1655]
 gi|184212292|gb|EDU09335.1| dimethyladenosine transferase [Burkholderia pseudomallei 1655]
          Length = 275

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 25/275 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  +   L      
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLAAPGSP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+    ++  +  +    LE+   DAL  DF    +I+ P     +RII NLPY
Sbjct: 67  LHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGDEPSLRIIGNLPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     +
Sbjct: 121 NISSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKL 177

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P PKV S ++  IPH  + +P    + L ++   AF +RRK LR +   LG
Sbjct: 178 IDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNT---LG 234

Query: 246 GENLL---HQAGIETNLRAENLSIEDFCRITNILT 277
           G   L      G +   RAE++ ++++ R+   + 
Sbjct: 235 GYRDLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 269


>gi|325278903|ref|YP_004251445.1| Ribosomal RNA small subunit methyltransferase A [Odoribacter
           splanchnicus DSM 20712]
 gi|324310712|gb|ADY31265.1| Ribosomal RNA small subunit methyltransferase A [Odoribacter
           splanchnicus DSM 20712]
          Length = 281

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 129/268 (48%), Gaps = 22/268 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           KK +GQ+FL D NI +KI +S   L  +T  ++EIG G G LT+ L    A  V  I+ D
Sbjct: 27  KKSLGQHFLRDQNIARKITDS---LLPVTRDILEIGPGMGVLTRHLFANPAFSVRAIDID 83

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           Q+    L     ++ +R  I+  D LK D  +++    P  +I NLPYNI +++ F  I 
Sbjct: 84  QESIDYLHQELPEYQDR--ILYGDFLKTDIRQYY--QEPFSVIGNLPYNISSQIFFRIIE 139

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                     +  + QKEV ERI A   S  YG LSV          +F +   VF P P
Sbjct: 140 NRH---LVRQVVCMIQKEVAERIAASPGSKTYGILSVFLQAFYHIEYLFTVGEKVFDPPP 196

Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET- 257
           KV S VI    +      C E L   + +  F +RRKTLR S++       +   G ++ 
Sbjct: 197 KVKSAVIRLTRNERVELGCEEKLFFNVVKTGFNQRRKTLRNSIRG------IIPPGFDSP 250

Query: 258 --NLRAENLSIEDFCRITNILTDNQDIA 283
             NLR E L I DF ++   +  N++I 
Sbjct: 251 YLNLRPEQLGITDFLQLCQDIEKNRNIG 278


>gi|53718304|ref|YP_107290.1| dimethyladenosine transferase [Burkholderia pseudomallei K96243]
 gi|53725018|ref|YP_102046.1| dimethyladenosine transferase [Burkholderia mallei ATCC 23344]
 gi|67641454|ref|ZP_00440232.1| dimethyladenosine transferase [Burkholderia mallei GB8 horse 4]
 gi|76809493|ref|YP_332287.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710b]
 gi|121600269|ref|YP_994030.1| dimethyladenosine transferase [Burkholderia mallei SAVP1]
 gi|124384045|ref|YP_001028306.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10229]
 gi|126450922|ref|YP_001081950.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10247]
 gi|134279776|ref|ZP_01766488.1| dimethyladenosine transferase [Burkholderia pseudomallei 305]
 gi|167002705|ref|ZP_02268495.1| dimethyladenosine transferase [Burkholderia mallei PRL-20]
 gi|167718167|ref|ZP_02401403.1| dimethyladenosine transferase [Burkholderia pseudomallei DM98]
 gi|167737198|ref|ZP_02409972.1| dimethyladenosine transferase [Burkholderia pseudomallei 14]
 gi|167909608|ref|ZP_02496699.1| dimethyladenosine transferase [Burkholderia pseudomallei 112]
 gi|167917623|ref|ZP_02504714.1| dimethyladenosine transferase [Burkholderia pseudomallei BCC215]
 gi|217420008|ref|ZP_03451514.1| dimethyladenosine transferase [Burkholderia pseudomallei 576]
 gi|237810897|ref|YP_002895348.1| dimethyladenosine transferase [Burkholderia pseudomallei MSHR346]
 gi|254176730|ref|ZP_04883387.1| dimethyladenosine transferase [Burkholderia mallei ATCC 10399]
 gi|254203732|ref|ZP_04910092.1| dimethyladenosine transferase [Burkholderia mallei FMH]
 gi|254208707|ref|ZP_04915055.1| dimethyladenosine transferase [Burkholderia mallei JHU]
 gi|254260055|ref|ZP_04951109.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710a]
 gi|254360240|ref|ZP_04976510.1| dimethyladenosine transferase [Burkholderia mallei 2002721280]
 gi|62900499|sp|Q62MM2|RSMA_BURMA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900502|sp|Q63X76|RSMA_BURPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122064287|sp|Q3JVW6|RSMA_BURP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221652|sp|A3MNW4|RSMA_BURM7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221653|sp|A2S8N7|RSMA_BURM9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221654|sp|A1V727|RSMA_BURMS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|52208718|emb|CAH34654.1| dimethyladenosine transferase [Burkholderia pseudomallei K96243]
 gi|52428441|gb|AAU49034.1| dimethyladenosine transferase [Burkholderia mallei ATCC 23344]
 gi|76578946|gb|ABA48421.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710b]
 gi|121229079|gb|ABM51597.1| dimethyladenosine transferase [Burkholderia mallei SAVP1]
 gi|124292065|gb|ABN01334.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10229]
 gi|126243792|gb|ABO06885.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10247]
 gi|134248976|gb|EBA49058.1| dimethyladenosine transferase [Burkholderia pseudomallei 305]
 gi|147745244|gb|EDK52324.1| dimethyladenosine transferase [Burkholderia mallei FMH]
 gi|147750583|gb|EDK57652.1| dimethyladenosine transferase [Burkholderia mallei JHU]
 gi|148029480|gb|EDK87385.1| dimethyladenosine transferase [Burkholderia mallei 2002721280]
 gi|160697771|gb|EDP87741.1| dimethyladenosine transferase [Burkholderia mallei ATCC 10399]
 gi|217397312|gb|EEC37328.1| dimethyladenosine transferase [Burkholderia pseudomallei 576]
 gi|237505952|gb|ACQ98270.1| dimethyladenosine transferase [Burkholderia pseudomallei MSHR346]
 gi|238522393|gb|EEP85837.1| dimethyladenosine transferase [Burkholderia mallei GB8 horse 4]
 gi|243061644|gb|EES43830.1| dimethyladenosine transferase [Burkholderia mallei PRL-20]
 gi|254218744|gb|EET08128.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710a]
          Length = 275

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 136/275 (49%), Gaps = 25/275 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT----QMLLTLGAR 71
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT      L T G+ 
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS- 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126
            +  +E D+    ++  +  +    LE+   DAL  DF    +I+ P     +RII NLP
Sbjct: 66  PLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGDEPSLRIIGNLP 119

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     
Sbjct: 120 YNISSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
           + D+ P  F P PKV S ++  IPH  + +P    + L ++   AF +RRK LR +L   
Sbjct: 177 LIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLG-- 234

Query: 245 GGENLL--HQAGIETNLRAENLSIEDFCRITNILT 277
           G  +L+     G +   RAE++ ++++ R+   + 
Sbjct: 235 GYRDLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 269


>gi|294508235|ref|YP_003572293.1| Dimethyladenosine transferase [Salinibacter ruber M8]
 gi|294344563|emb|CBH25341.1| Dimethyladenosine transferase [Salinibacter ruber M8]
          Length = 269

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 128/264 (48%), Gaps = 11/264 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PK+ +GQNFL D N+ +KI  +  +     V+E+GAG G LT+ L     R +  +E D+
Sbjct: 9   PKQSLGQNFLHDPNMAEKIVGTLTAPPEAHVVEVGAGTGVLTERLAERHDR-LTALEIDE 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWIS 139
           +   +L++   +     ++ + D  + D+    +    P+R+I+N PY + + +LF  + 
Sbjct: 68  RAVEVLRERVPE----ADVRETDVRETDWAALADEKGGPLRVISNTPYYLTSPILFALLG 123

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                       L  QKEV ERI A+ ++  YG LSVL     + T+ F + P VF P P
Sbjct: 124 QRDC---LAEAVLTMQKEVAERIVAEPSTKAYGILSVLLQLFAEPTLCFTVPPQVFSPQP 180

Query: 200 KVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            VTS V  I F P   P     +  ++  + AF +RRK LR SL     E  +       
Sbjct: 181 DVTSAVVRIRFGPDTEPEDLHFDDARRYVRAAFNQRRKMLRNSLSAWTKEQDVGFPNDWG 240

Query: 258 NLRAENLSIEDFCRITNILTDNQD 281
             RAE L+ ++F  +   L  + D
Sbjct: 241 RKRAEALTPDEFATLARHLDAHAD 264


>gi|215426288|ref|ZP_03424207.1| dimethyladenosine transferase [Mycobacterium tuberculosis T92]
          Length = 377

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 133/266 (50%), Gaps = 21/266 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL  GA  V  +E D 
Sbjct: 30  PRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGA-TVTAVEIDP 88

Query: 81  QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                L+   ++H     +RL ++  D L +  E     ++P  ++ANLPYN+    L +
Sbjct: 89  LLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL--AAAPTAVVANLPYNVAVPALLH 146

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    +T++ Q EV ER+ A+  S  YG  SV   +  +      +SP VF+
Sbjct: 147 LLVEF---PSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFW 203

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQE----AFGKRRKTLRQSLKRLGGE---- 247
           P P+V S ++    +  +P P   ++ ++   E    AF +RRKT R +  +  G     
Sbjct: 204 PIPRVYSGLVRIDRYETSPWP-TDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSES 262

Query: 248 -NLLHQAGIETNLRAENLSIEDFCRI 272
            N L  A I+   R E LSI+DF R+
Sbjct: 263 ANRLLAASIDPARRGETLSIDDFVRL 288


>gi|159906054|ref|YP_001549716.1| dimethyladenosine transferase [Methanococcus maripaludis C6]
 gi|226732596|sp|A9AAW1|RSMA_METM6 RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|159887547|gb|ABX02484.1| dimethyladenosine transferase [Methanococcus maripaludis C6]
          Length = 263

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 14/221 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ FL D N +KK    +   D   V+E+G G G LT+ L  L A+KV VIE D++ 
Sbjct: 5   KKLGQCFLKDKNFVKKAINRAEITDKDIVLEVGLGEGALTKELAKL-AKKVYVIELDERL 63

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141
            P   +I+S+  N +EII  DALKVD +   FN     +I+ANLPY I + + F ++  D
Sbjct: 64  KPFADEITSEFEN-VEIIWSDALKVDLKNLGFN-----KIVANLPYQISSPITFKFLEED 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E+  L++Q E  +R+  + ++  Y RLSV   +      +  + P  F P P V
Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172

Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241
            S ++             E   KK+ +  F  R +T++++L
Sbjct: 173 NSAIVKLTKRKPKYSVKDEKFFKKVLKALFQHRNRTIKRAL 213


>gi|206895498|ref|YP_002247582.1| dimethyladenosine transferase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738115|gb|ACI17193.1| dimethyladenosine transferase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 279

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 142/272 (52%), Gaps = 26/272 (9%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  + I PKK +GQ+FL+  ++  KI  ++G  D    +EIGAG G LT + L    + 
Sbjct: 20  LLKQFSISPKKTLGQSFLICDHVADKIVAAAGHDD--VAVEIGAGTGMLT-VRLASHYKN 76

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGT 131
           VI IE DQ+   +   I++  PN + + +D      F K+    + I  ++ NLPY I T
Sbjct: 77  VIAIEIDQRLKALHNMITADFPNVVFVYED------FLKWIPRPTEIPTVVGNLPYYITT 130

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            +L   +     P   +++  + QKE+G R+ A   S  YG LSV     TK  M+F ++
Sbjct: 131 PIL-EKVFFQMKP---KTMVFMVQKELGARMVANPGSKTYGALSVFVQSFTKPEMLFHVT 186

Query: 192 PHVFFPSPKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            + F+P+P+V S V+       +   ++P     E L+ + + AF +RRK LR  LK+  
Sbjct: 187 KNCFYPAPEVDSVVVKLEGIYGYEEVVDP-----EVLEHVVKRAFQQRRKMLRSGLKKEP 241

Query: 246 GENLL-HQAGIETNLRAENLSIEDFCRITNIL 276
                  +AGI+T+LR E +++E + R   ++
Sbjct: 242 LLLKKAEEAGIDTSLRPEQITVEQYVRWATLV 273


>gi|206559290|ref|YP_002230051.1| dimethyladenosine transferase [Burkholderia cenocepacia J2315]
 gi|226729763|sp|B4EBE8|RSMA_BURCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|198035328|emb|CAR51203.1| dimethyladenosine transferase [Burkholderia cenocepacia J2315]
          Length = 275

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 134/280 (47%), Gaps = 35/280 (12%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L   L      
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIERLATPESP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+    ++  +  +    LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 67  LHAVELDRD---LIGRLQQRFGALLELHAGDALAFDFR---SLAAPGDKPSLRIVGNLPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           NI + LLF+ ++      F +++     + Q EV ER+ A+  +  + RLSV+  +R   
Sbjct: 121 NISSPLLFHLMT------FADAVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVM 174

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTL 237
             M D+ P  F P PKV S ++  IP+       ++P+      L +I   AF +RRK L
Sbjct: 175 EKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEIVSAAFSQRRKML 229

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           R +L            G +   RAE++S+ ++  +   L 
Sbjct: 230 RNTLGDYRETIDFDALGFDLARRAEDVSVAEYVGVAQALA 269


>gi|126439976|ref|YP_001057747.1| dimethyladenosine transferase [Burkholderia pseudomallei 668]
 gi|126452897|ref|YP_001064991.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106a]
 gi|167844380|ref|ZP_02469888.1| dimethyladenosine transferase [Burkholderia pseudomallei B7210]
 gi|242317237|ref|ZP_04816253.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106b]
 gi|254196635|ref|ZP_04903059.1| dimethyladenosine transferase [Burkholderia pseudomallei S13]
 gi|166221655|sp|A3NRM0|RSMA_BURP0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221656|sp|A3N5X6|RSMA_BURP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|126219469|gb|ABN82975.1| dimethyladenosine transferase [Burkholderia pseudomallei 668]
 gi|126226539|gb|ABN90079.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106a]
 gi|169653378|gb|EDS86071.1| dimethyladenosine transferase [Burkholderia pseudomallei S13]
 gi|242140476|gb|EES26878.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106b]
          Length = 275

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 136/275 (49%), Gaps = 25/275 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT----QMLLTLGAR 71
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT      L T G+ 
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS- 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126
            +  +E D+    ++  +  +    LE+   DAL  DF    +I+ P     +RII NLP
Sbjct: 66  PLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGGEPSLRIIGNLP 119

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     
Sbjct: 120 YNISSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
           + D+ P  F P PKV S ++  IPH  + +P    + L ++   AF +RRK LR +L   
Sbjct: 177 LIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLG-- 234

Query: 245 GGENLL--HQAGIETNLRAENLSIEDFCRITNILT 277
           G  +L+     G +   RAE++ ++++ R+   + 
Sbjct: 235 GYRDLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 269


>gi|313835387|gb|EFS73101.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA2]
          Length = 298

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 139/286 (48%), Gaps = 26/286 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLL 66
           S++ I     + P K  GQNF+ D N +++I   +  GS D   VIE+G G G+LT  LL
Sbjct: 11  SIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLALVGSED--RVIEVGPGLGSLTLGLL 68

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRII 122
             GA +V+ +E D+     L D I+ + P    RL+++  DAL V   K    + P  ++
Sbjct: 69  EPGA-QVVAVEIDETLANQLPDTIAERMPEAAERLDVVLSDALDV---KAIPGAEPTALV 124

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + ++     P W +  ++ Q EV +R+ A   S  YG  S    W  
Sbjct: 125 ANLPYNVAVPVLLHMLA---MCPQWSTGVVMVQSEVADRLVAAPGSKIYGIPSAKLAWYA 181

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-----IPCCLES-LKKITQEAFGKRRKT 236
           +AT + ++ P VF+P P V S ++       P      P    S + ++   AF  RRK 
Sbjct: 182 EATRVGNVPPTVFWPVPNVDSGLVRITRRRPPQIDGRDPHATRSQVFRVVDAAFASRRKM 241

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LR +L  L G       L+  AGI+   R E L I D  R+   L 
Sbjct: 242 LRSALAGLCGGSTAASELITAAGIDPTARGEALDIADLARVAEALA 287


>gi|257388711|ref|YP_003178484.1| dimethyladenosine transferase [Halomicrobium mukohataei DSM 12286]
 gi|257171018|gb|ACV48777.1| dimethyladenosine transferase [Halomicrobium mukohataei DSM 12286]
          Length = 290

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 26/224 (11%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D  +L +I   +  +D   V+E+GAGPG LT  LL + A +V  IE+D  F   L
Sbjct: 34  QHFLIDDRVLDRIPGYADQMDRSHVLEVGAGPGALTDRLLAV-ADRVTAIERDPDFAAHL 92

Query: 87  KD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           ++    +   +RL I++ DAL VD  +F         ++NLPY   + + F  +      
Sbjct: 93  REEFADAIDADRLTIVEGDALDVDLPEFSAS------VSNLPYGASSEIAFRLL------ 140

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
           P  + L L+FQ+E  ER+ A   S  YGRLSV  G      ++  + P  F P P+V S 
Sbjct: 141 PRGKPLVLMFQQEFAERMAADPGSDDYGRLSVTAGHYADVEIVETVPPTAFDPQPRVDSA 200

Query: 205 VIHFIPHLNP---IP---CCLESLKKITQEAFGKRRKTLRQSLK 242
           ++   P   P   +P     ++ LK +    F +RRKT+R +++
Sbjct: 201 IVRLRPR-EPDYSVPDDDFFMDFLKGV----FTQRRKTMRNAVR 239


>gi|288869605|ref|ZP_05975193.2| dimethyladenosine transferase [Methanobrevibacter smithii DSM 2374]
 gi|288860560|gb|EFC92858.1| dimethyladenosine transferase [Methanobrevibacter smithii DSM 2374]
          Length = 306

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 13/207 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S + K IL+ Y I   K +GQN+L+D N   +I +         V+EIG G G LT + L
Sbjct: 14  SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLT-IEL 72

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               +KVI IE+D     IL++ +  ++ + +++I DDAL V+F KF       +II+NL
Sbjct: 73  AKRVKKVIAIEQDSNICQILENRLKKENIDNVDLINDDALNVEFPKFD------KIISNL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + + F +++ D     ++   L++QKE   R+  +  S  Y RLS +  ++    
Sbjct: 127 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL 212
           ++  +S   F P PKV STV+   P L
Sbjct: 182 LLTGVSAESFIPKPKVDSTVVRLTPKL 208


>gi|303244670|ref|ZP_07331002.1| dimethyladenosine transferase [Methanothermococcus okinawensis IH1]
 gi|302484978|gb|EFL47910.1| dimethyladenosine transferase [Methanothermococcus okinawensis IH1]
          Length = 279

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 137/274 (50%), Gaps = 33/274 (12%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ FL D NI+KK   ++       V+EIG G G LT+ L    A+KV VIE D + 
Sbjct: 12  KKLGQCFLKDKNIVKKAVNAADINKNDIVLEIGLGKGILTKELAK-NAKKVYVIELDMRL 70

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141
            P  +++ +++PN +EII +DALKV+ ++  FN     +I+ANLPY I + + F ++  D
Sbjct: 71  EPFAEEVIAEYPN-VEIIWNDALKVNLDELNFN-----KIVANLPYQISSPITFKFLKKD 124

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                ++   L++Q E  +R+ A++ +  YGRLSV   +      +  +SP  F P PKV
Sbjct: 125 -----FDVAVLMYQYEFAKRMIAKEGTKEYGRLSVSVQYYANVQFVCKVSPSAFSPKPKV 179

Query: 202 TSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLKRLGGE---------- 247
            S ++  I    P         E  + + +  F  + KT +++L     E          
Sbjct: 180 DSAIVK-ITKKEPNELYYLEDKEFFENVVRALFQHKNKTAKKALINSCHEMGLNRDEIKN 238

Query: 248 -----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
                N L+ +  + N R   L+IE    ++N+L
Sbjct: 239 MIDTLNNLNLSKFDLNERVFTLNIEKIVELSNML 272


>gi|299116859|emb|CBN74971.1| chloroplast dimethyladenosine synthase (Partial) [Ectocarpus
           siliculosus]
          Length = 433

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 141/273 (51%), Gaps = 27/273 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           PK+ +GQN+L D N + KI    G  S  G  V+E+G G G LTQ+L       ++ ++ 
Sbjct: 136 PKQSLGQNYLSDQNYVMKICNHFGDTSEGGRRVLELGPGTGALTQVLHERFP-DMLAVDI 194

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137
           DQ+   +L    S  P+ L  +  D L++D+ K   +   P+ +I NLPY+I +++LF  
Sbjct: 195 DQRAIELL---GSNMPS-LNAVMSDVLQLDYTKLAELRGGPLSVIGNLPYHITSQILFTL 250

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
              D +     ++  + Q EV +RI A+ ++  YG LSV+     +  ++F I P VF+P
Sbjct: 251 C--DHYQSVRRAVVTM-QLEVAQRIVAKSSTKQYGILSVVFQLYARPQVLFQIPPTVFYP 307

Query: 198 SPKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLL 250
            P VTS +I        P +N    CL+S   +   AF +RRK LRQSLK L   G+ L 
Sbjct: 308 QPSVTSALISLDFTGKGPGVN--QACLKS---VLSSAFQQRRKMLRQSLKPLLRAGQKLP 362

Query: 251 HQAGIETNLRAENLSIEDFCRITN-ILTDNQDI 282
            +       R E L  ++F  +T  +  D+ ++
Sbjct: 363 EEFATR---RPEQLEPQEFVELTRAVFGDSAEL 392


>gi|254774035|ref|ZP_05215551.1| dimethyladenosine transferase [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 318

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 19/283 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +    +  P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL  G
Sbjct: 22  IRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGSLTLALLDRG 81

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L    ++H +    RL ++  D L +  ++      P  ++ANL
Sbjct: 82  A-HVTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDEL--AEPPTAVVANL 138

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+    L + ++     P   ++T++ Q EV ER+ A+     YG  SV   +  +  
Sbjct: 139 PYNVAVPALLHLLAEF---PSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFGRVR 195

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN---PI-PCCLESLKKITQEAFGKRRKTLRQSL 241
               +SP VF+P P+V S ++    +     PI P     + ++   AFG+RRKT R + 
Sbjct: 196 RCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPIDPAFRRQVFELVDIAFGQRRKTCRNAF 255

Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
               G      + L  A I+   R E LSI+DF R+     D 
Sbjct: 256 VDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298


>gi|292659595|pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
           Homocysteine And Methanocaldococcus Jannaschi Dim1.
 gi|292659596|pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
           Methanocaldococcus Jannaschi Dim1
 gi|292659597|pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
           Methanocaldococcus Jannaschi Dim1
 gi|292659598|pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
           Methionine And Methanocaldococcus Jannaschi Dim1
          Length = 295

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 14/223 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ FL+D N + K  ES+       V+EIG G G LT+ L    A+KV VIE D+
Sbjct: 24  PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDK 82

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139
              P    +   + N +EII  DALKVD  K  FN     +++ANLPY I + + F  I 
Sbjct: 83  SLEPYANKLKELY-NNIEIIWGDALKVDLNKLDFN-----KVVANLPYQISSPITFKLIK 136

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  ++   L++Q E  +R+ A   +  YGRLSV    R    ++  + P  F+P P
Sbjct: 137 RG-----FDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKP 191

Query: 200 KVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241
           KV S ++   P+        E+      +  F  R K++R++L
Sbjct: 192 KVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKAL 234


>gi|330944934|gb|EGH46747.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 189

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 5/180 (2%)

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
           Q DALK DF         +R++ NLPYNI T L+F+ +   +       +  + QKEV E
Sbjct: 8   QGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNAS---LIRDMHFMLQKEVVE 64

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL 219
           R+ A      +GRLS++  +  +   +F++ P  F P PKV S ++  +P+   P P   
Sbjct: 65  RMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVPYETLPHPAKD 124

Query: 220 ES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              L++I +EAF +RRKTLR +LK L   + +  +G++ +LR E L +  F R+ + L++
Sbjct: 125 HRVLERIVREAFNQRRKTLRNTLKLLLTSDEITASGVDGSLRPEQLDLAAFVRLADTLSE 184


>gi|255039492|ref|YP_003090113.1| dimethyladenosine transferase [Dyadobacter fermentans DSM 18053]
 gi|254952248|gb|ACT96948.1| dimethyladenosine transferase [Dyadobacter fermentans DSM 18053]
          Length = 266

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 132/266 (49%), Gaps = 15/266 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           K+  KK++GQ+FL DLNI ++I +  SG      V+EIG G G LTQ LL        VI
Sbjct: 10  KVRAKKHLGQHFLKDLNIAQRIVDGLSGHGGYDRVLEIGPGMGVLTQFLLPKTDFSTYVI 69

Query: 77  EKDQQFFPILKDISSQHPNRL-EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           E D +    L+     +P+    II  D LK +  + F       +I N PYNI +++ F
Sbjct: 70  EIDTESVAYLE---KHYPDLAPRIIAGDFLKFNAGEHF--PGKFAVIGNFPYNISSQIFF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      P    +  + QKEV +RI +   +  YG LSVL         +  + P  F
Sbjct: 125 RALEIRDRIP---EIVCMLQKEVAQRIASPPGNKDYGILSVLLQAFYDIDYLVSVPPGAF 181

Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            P PKV S VI    + ++ + C  +   ++ + AF +RRKTLR +LK + GE   H   
Sbjct: 182 DPPPKVQSGVIRLRRNGVSALECDEKLFFRVVKTAFNQRRKTLRNALKPV-GEIPYHPL- 239

Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280
              N RAE LS++DF  +T +  + Q
Sbjct: 240 --LNKRAEQLSVQDFVTLTLLAQNAQ 263


>gi|111022636|ref|YP_705608.1| dimethyladenosine transferase [Rhodococcus jostii RHA1]
 gi|118600893|sp|Q0S4T6|RSMA_RHOSR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|110822166|gb|ABG97450.1| probable rRNA dimethyladenosine transferase [Rhodococcus jostii
           RHA1]
          Length = 296

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 21/278 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +   + + P K +GQNF+ D N +++I  ++G     TV+E+G G G+LT  LL + 
Sbjct: 22  VRALAEEFGVRPTKQLGQNFVHDANTVRRIVATAGVGREDTVLEVGPGLGSLTLALLDV- 80

Query: 70  ARKVIVIEKDQQF---FPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
             KVI +E D       P+ + D + +  +RL ++  DA++V   +      P  ++ANL
Sbjct: 81  VDKVIAVEIDPNLAARLPVTVADRAPELADRLTVVGADAMRVKPSEIPG--EPTALVANL 138

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L +  S     P   +  ++ Q EV +R+ A   S  YG  SV   +     
Sbjct: 139 PYNVAVPVLLHLFSEL---PSLRTALVMVQAEVADRLAASPGSKIYGVPSVKANFFGAVR 195

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK-----ITQEAFGKRRKTLRQS 240
               +   VF+P PKV S ++    +  P P  ++   +     +   AF +RRKTLR +
Sbjct: 196 RAGAVGRAVFWPVPKVESGLVRIDRYAEP-PWPVDDAHRRRVFAVIDAAFAQRRKTLRAA 254

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           L    G     E  L +AGI  + R E L    F R+ 
Sbjct: 255 LGGWAGSPAEAERRLLEAGIAPSARGETLDAAAFVRLA 292


>gi|86160103|ref|YP_466888.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|122064278|sp|Q2IFT9|RSMA_ANADE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|85776614|gb|ABC83451.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 284

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 35/296 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M ++  S + +L  Y +  KK  GQNFL +  +L  IA  +    G  V+E+GAG G+LT
Sbjct: 1   MTDRYPSPRALLDRYDLRAKKSWGQNFLGEEAVLDDIARLAAPRAGDPVLELGAGLGHLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---- 118
             LL  GAR V+ +E+D+    +L+    +  +R+ +++ DA ++D              
Sbjct: 61  ARLLARGAR-VVAVERDRDMARVLR---GELGDRITLLEADAARLDHAALAARFGAPAAA 116

Query: 119 -----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                + ++ NLPY++ + +LF+ +              L Q+EV ER+ A   S  +G 
Sbjct: 117 GEGARLAVVGNLPYHLTSPILFSILDQVA---HVSRAVFLLQREVAERLAAPPASRDWGL 173

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPI--PCCLESLKKITQEA 229
           LSVL     + ++   + P  F+P PKV S V+   F P  + +  P      +++ +  
Sbjct: 174 LSVLLQREAEVSVERIVPPGAFWPPPKVESAVLCALFRPPADAVGDPA---RFRRLVKAG 230

Query: 230 FGKRRKTLRQSLKRLGGENLLHQA---------GIETNLRAENLSIEDFCRITNIL 276
           FG RRKTLR +   LG   L   A         G++   R E L++ ++  +   L
Sbjct: 231 FGLRRKTLRNA---LGSAKLAEPARLEAAFAAAGVDPGRRGETLTLAEWAALDRAL 283


>gi|156084308|ref|XP_001609637.1| dimethyladenosine transferase protein [Babesia bovis T2Bo]
 gi|154796889|gb|EDO06069.1| dimethyladenosine transferase protein, putative [Babesia bovis]
          Length = 366

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 15/253 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI  ++      TV+EIG G GNLT  L+ L ARKVI I+ D + 
Sbjct: 51  KKFGQHMLKNPGILDKIILAAEIRSSDTVLEIGPGTGNLTIRLVPL-ARKVIAIDIDNRM 109

Query: 83  F-PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              + K   S   + L++I+ DAL++ + KF ++ +     ANLPY I +  +F  +S  
Sbjct: 110 VGEVKKRCLSMGYSNLDVIEGDALRITYPKF-DVCT-----ANLPYQISSPFVFKLLSHR 163

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P +    L+FQKE  ER+ A  N   YGRL++ T      T +  ++P  F P PKV
Sbjct: 164 ---PLFRCAVLMFQKEFAERLLASTNEAKYGRLAINTRLFCTVTRVCKVAPGSFNPPPKV 220

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL---HQAGIETN 258
            S ++  +P   P+         + +  F ++R+TLR   K+    ++L   ++     N
Sbjct: 221 DSMIVKIVPREQPLVIDFVEWDGMIRVCFTRKRRTLRSLFKKQAILSVLEGNYKNWCTIN 280

Query: 259 LRA-ENLSIEDFC 270
            +A E +  +D+C
Sbjct: 281 GKAPEPMPFKDYC 293


>gi|189485764|ref|YP_001956705.1| dimethyladenosine transferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287723|dbj|BAG14244.1| dimethyladenosine transferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 265

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 135/259 (52%), Gaps = 25/259 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           G+NFL D NI   I +++       V+EIG G G LT+ ++ L  + +  +EKD+     
Sbjct: 12  GKNFLTDNNIANNIIKAANLEKYDEVLEIGPGKGILTK-IIQLQVKYLTAVEKDKILSQQ 70

Query: 86  LKDISSQHPNR-LEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISADTW 143
           L    S H  R ++II  D LK      +NI ++ ++II+NLPYN+GT ++   +     
Sbjct: 71  LNHYFSFHGARNIKIINADFLK------YNIPNTELKIISNLPYNVGTAIIQKILPLK-- 122

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              W +   + QKEV +R+ AQ  S  YG +S+ T + T   ++FD+S   F P PK+ S
Sbjct: 123 --HWTTAVFMLQKEVTQRLVAQPGSKAYGYISIFTSYYTDCKILFDVSSRCFSPPPKIIS 180

Query: 204 TVIHFIPHLN-PI-PCCLESLKKITQEAFGKRRKTLR------QSLKRLGGENLLHQAGI 255
           +VI      + P  P   + +K     AF  RRKT+       ++L++    ++L+   +
Sbjct: 181 SVIKLTNKASEPTDPVFFDFVK----HAFKTRRKTILNCLSSFKNLEKSKAAHILNACAL 236

Query: 256 ETNLRAENLSIEDFCRITN 274
           +  LR + LSI DF R+ +
Sbjct: 237 DPFLRPDKLSIPDFLRLID 255


>gi|209877254|ref|XP_002140069.1| dimethyladenosine transferase protein [Cryptosporidium muris RN66]
 gi|209555675|gb|EEA05720.1| dimethyladenosine transferase protein, putative [Cryptosporidium
           muris RN66]
          Length = 361

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 113/221 (51%), Gaps = 11/221 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI E+S       V+EIG G GNLT  LL L ARKVI  + D + 
Sbjct: 54  KKKGQHLLKNPGILDKIVEASDIKPTDIVLEIGPGTGNLTMRLLPL-ARKVIAFDIDPRM 112

Query: 83  FPILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +K  S +   N LE+ + DAL+ D  KF +I +     ANLPY I +  +F  +S  
Sbjct: 113 VAEVKKRSMNAGYNNLEVKEGDALRSDLGKF-DICT-----ANLPYQISSPFVFRILSHK 166

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P +    L+FQ+E   R+ A+    HY RL++ T    K   +  + P  F P PKV
Sbjct: 167 ---PTFRCAVLMFQEEFALRLLAEPGDKHYCRLTLNTKLLCKVIRVCKVLPGSFNPPPKV 223

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            S V+ FIP   PIP        + +  F +++KT+R + K
Sbjct: 224 NSMVVKFIPKTCPIPVNFREWDGLMRICFLRKKKTIRANFK 264


>gi|57234784|ref|YP_181149.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195]
 gi|119365020|sp|Q3Z9F0|RSMA_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|57225232|gb|AAW40289.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195]
          Length = 291

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 143/277 (51%), Gaps = 15/277 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y +  +K +GQ+FL+   +L KI  ++      TVIE+G G G LT+ L+   A
Sbjct: 20  KEMMEGYTLRARKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELIKR-A 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +VI +E D +    L +    +PN   II  D LK    +    + P +++ANLPY I 
Sbjct: 79  GQVIAVELDDKLVTALTEKFKAYPN-FRIIHSDILKTSPAEILGQNIPYKLVANLPYYIT 137

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +L  ++ A+  P   E + ++ QKEV + + AQ      G L++   +    +++  +
Sbjct: 138 SAVLRQFLEAEAKP---ELMVVMVQKEVAKNMVAQTG--DMGLLTLSVRFYGNPSLVSVV 192

Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN 248
               F+P P+V S ++   IP    +    E+   K+ +  FG RRKTL  +L +  G +
Sbjct: 193 PGGAFYPPPEVDSAIVKVAIPQAAIMQGVSEADFFKLARAGFGTRRKTLLNALAQGLGVS 252

Query: 249 ------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                 LL++AGIE   RAE LS+E++  +  + T+N
Sbjct: 253 KQSVLALLNRAGIEPARRAETLSMEEWKMLCLVYTEN 289


>gi|224437068|ref|ZP_03658049.1| dimethyladenosine transferase [Helicobacter cinaedi CCUG 18818]
 gi|313143541|ref|ZP_07805734.1| dimethyladenosine transferase dimethyltransferase [Helicobacter
           cinaedi CCUG 18818]
 gi|313128572|gb|EFR46189.1| dimethyladenosine transferase dimethyltransferase [Helicobacter
           cinaedi CCUG 18818]
          Length = 296

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 136/281 (48%), Gaps = 28/281 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L+H+    KK +GQNFL D + + KI +S  +L  I  +EIG G G+LTQ LL +    +
Sbjct: 4   LAHH---AKKRLGQNFLQDSHYIHKIVQSIPTLP-IQCVEIGVGLGDLTQELLKI--ESL 57

Query: 74  IVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I  E D     +L +  S+     RL II +D L    ++ +  +   ++++NLPY I T
Sbjct: 58  IAYEVDLDLCSLLNEKFSKQIESGRLHIIYEDVLNRPSQQAWLHTQEYKVVSNLPYYIAT 117

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   +       F     ++ QKEV ++  A+     +  LSVL      A ++FD+ 
Sbjct: 118 HIIVRLL----HDRFCRGFIVMTQKEVAQKFCAKSGEKEFCALSVLVESLGTAELLFDVP 173

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIP-------CCLESLKKITQEAFGKRRKTLRQSLK-- 242
              F P PKVTS+V  F+ H NP+        C LE+  K+   AF   RKTL ++L   
Sbjct: 174 KEAFSPIPKVTSSV--FVIHKNPLQGNADFSLCDLEAFLKL---AFCSPRKTLAKNLSLS 228

Query: 243 --RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             +   E  L  A ++ N RA  +  E F  I N L    D
Sbjct: 229 FDKKSVELALESANVKPNARAHEVKTESFHHILNTLKKGND 269


>gi|294461690|gb|ADE76404.1| unknown [Picea sitchensis]
          Length = 390

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 12/217 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +LK I + +G  +  TV+EIG G GNLT  LL   AR+VI +E D + 
Sbjct: 73  KSRGQHILTNPRVLKSIVDKAGVRETDTVLEIGPGTGNLTLELLQ-AARRVIAVEIDPRM 131

Query: 83  FPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +  +   ++   RLE+++ D L+ D   F +I      +AN+PY I + L+F  +S 
Sbjct: 132 IEAVHKRVQGTEMAQRLELVRGDILRTDLPSF-DI-----CVANIPYQISSPLIFKLLS- 184

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
            T P F  + TL+ QKE G R+ A+     + RL+V       A ++ D+S   F P PK
Sbjct: 185 -TMPKFRNA-TLMLQKEFGRRLVAKPGDSLFNRLAVNVDLLASAKLLMDVSKRDFTPCPK 242

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           V S+V+   P   P P  L    + T   F ++ KTL
Sbjct: 243 VDSSVVRIEPRAWPPPVDLSEWNRFTLMCFTRKNKTL 279


>gi|289193112|ref|YP_003459053.1| dimethyladenosine transferase [Methanocaldococcus sp. FS406-22]
 gi|288939562|gb|ADC70317.1| dimethyladenosine transferase [Methanocaldococcus sp. FS406-22]
          Length = 274

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ FL+D N +KK  ES+       V+EIG G G LT+ L    A+KV VIE D+
Sbjct: 4   PKKKLGQCFLIDKNFVKKAVESAEITKDDIVLEIGLGKGILTEELAK-NAKKVYVIEIDK 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139
              P    +   + N +EII  DALKV+ ++  FN     +++ANLPY I + + F  I 
Sbjct: 63  SLEPYANKLKENY-NNIEIIWGDALKVNLDELDFN-----KVVANLPYQISSPITFKLIK 116

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  ++   L++Q E   R+ A++ +  YGRLSV    R    ++  + P  F P P
Sbjct: 117 KG-----FDLAVLMYQYEFARRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPTAFSPRP 171

Query: 200 KVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241
           KV S ++   P+ N      E       +  F  R K++R++L
Sbjct: 172 KVYSAIVKIKPNKNKYHIENEDFFDDFLRTIFQHRNKSVRKAL 214


>gi|294899921|ref|XP_002776810.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239884011|gb|EER08626.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 354

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 118/222 (53%), Gaps = 13/222 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+ L +  IL KI E+S      TV+EIG G GNLT  LL L A+KV+ +E D +
Sbjct: 50  QKKFGQHLLKNPGILDKIIEASDIKSTDTVLEIGPGTGNLTMRLLEL-AKKVVALEIDPR 108

Query: 82  FFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               +K   +Q   R  L++I+ DALK  F   F++      +ANLPY I +   F  ++
Sbjct: 109 MAAEVKK-RAQTAGRMNLKVIEGDALKTAFP-VFDVC-----VANLPYQISSPFTFKLLA 161

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P +    ++FQKE GER+ A+    +YGRL++     +K T + ++S   F P P
Sbjct: 162 ---HRPVFRCGVIMFQKEFGERLVARVGEENYGRLAINCQLFSKVTRVCNVSKGSFNPPP 218

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           +V S ++ F+ H +PI         + + AF ++ KTL  S 
Sbjct: 219 EVDSMIVKFVLHKDPINVDFPEFDGLLRIAFTRKNKTLHSSF 260


>gi|298207337|ref|YP_003715516.1| dimethyladenosine transferase [Croceibacter atlanticus HTCC2559]
 gi|83849973|gb|EAP87841.1| dimethyladenosine transferase [Croceibacter atlanticus HTCC2559]
          Length = 269

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 130/263 (49%), Gaps = 15/263 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ+FL D    +KI  +        V+EIG G G LT+ LL      +  ++ DQ+
Sbjct: 8   KKHLGQHFLNDEETAEKIGNTLSFKGYDHVLEIGPGTGVLTKYLLEKDV-ALTAMDLDQE 66

Query: 82  FFPILKD-ISSQHPNRL-----EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
               LKD  S +H +++      ++  D LK D  + F       I  N PYNI T+++F
Sbjct: 67  SVDYLKDHFSIEHASKISSKSFRVLYADFLKYDLSQLFG-DEQFAITGNFPYNISTQIVF 125

Query: 136 NWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
             +   D  P F    T +FQKEV +RI  ++ S  YG LSVL      A  +F + P V
Sbjct: 126 KTLELRDQIPEF----TGMFQKEVAKRICEKEGSKAYGILSVLAQAFYNAEYLFTVPPTV 181

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F P PKV S V+      +      E L  ++ ++AF +RRKTLR SLK     + L   
Sbjct: 182 FNPPPKVESGVLRLTRKEDYSLNVDEKLFFRVVKQAFQQRRKTLRNSLKTFQLSDELRVN 241

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
            I  N R E LS+  F  +T ++
Sbjct: 242 DI-FNKRPEQLSVAAFLELTALI 263


>gi|257057212|ref|YP_003135044.1| dimethyladenosine transferase [Saccharomonospora viridis DSM 43017]
 gi|256587084|gb|ACU98217.1| dimethyladenosine transferase [Saccharomonospora viridis DSM 43017]
          Length = 284

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 141/280 (50%), Gaps = 16/280 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ + +   + P K +GQNF+ D N +++I   +G   G  V+E+G G G+LT  LL
Sbjct: 10  AAEIRRLAAALGLRPTKKLGQNFVHDANTVRRIVGLAGVEPGEAVVEVGPGLGSLTLGLL 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L D  ++H      RL +I+ DAL++  ++      P  ++
Sbjct: 70  HAGA-HVAAVEIDPVLAARLPDTVAEHAPDTVERLTVIERDALRLRADEL--PIEPTALV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + ++    P    +L ++ Q EV +R++A+  S  YG  SV   W  
Sbjct: 127 ANLPYNVAVPVVLHLLA--ELPSLRRAL-VMVQTEVADRMSARPGSRVYGVPSVKLAWYG 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +A  +  +   VF+P P V S+++ F     P     +++  +   AF +RRKTLR +L 
Sbjct: 184 RARKVASVPRSVFWPVPNVDSSLVAF-ERATPPDADRDTVFALVDAAFAQRRKTLRAALA 242

Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277
              G       LL +AG++   R E L++E F  I    T
Sbjct: 243 PWAGSADRAAELLSRAGVDPATRGERLTVEQFAAIARAAT 282


>gi|37521560|ref|NP_924937.1| rRNA (adenine-N6,N6)-dimethyltransferase [Gloeobacter violaceus PCC
           7421]
 gi|62900565|sp|Q7NJ41|RSMA_GLOVI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|35212558|dbj|BAC89932.1| rRNA (adenine-N6,N6)-dimethyltransferase [Gloeobacter violaceus PCC
           7421]
          Length = 272

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 134/267 (50%), Gaps = 22/267 (8%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ++L D  +L +I  ++G   G  V+EIG G G+LT  LL      V+ +E D++ 
Sbjct: 5   KRFGQHWLNDGAVLDRIVAAAGLACGDRVLEIGPGLGSLTARLLR--QVPVVAVEIDRRA 62

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              L+        R  +++ D L+    +  N+     ++AN+PYNI   +L     +  
Sbjct: 63  VAQLQRQFGGD-KRFVLVEGDILREALPEPANV-----VVANIPYNISGPILAKLTGSLA 116

Query: 143 WP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            P   + ++ LL QKE+G+RI A   S  YG LSV   +  +  ++F++  H F P PKV
Sbjct: 117 QPIRRFRTIVLLVQKELGQRIAAPPGSRTYGALSVRLQYLAECELLFEVPSHCFTPPPKV 176

Query: 202 TSTVIHFIPHLNPIPCCLES-----LKKITQEAFGKRRKTLRQSLKR-LGGENLLHQAG- 254
            S VI     L P P  L++     L  +   AF  RRK L+  LK  +  E LL     
Sbjct: 177 DSAVI----RLTPRPFALQADDPAHLDALVTRAFATRRKMLKNCLKGWVETEKLLAAFAS 232

Query: 255 --IETNLRAENLSIEDFCRITNILTDN 279
             I  + RAE+LS+E F +++N L ++
Sbjct: 233 LDISPDARAEDLSVERFVQLSNRLAES 259


>gi|270014921|gb|EFA11369.1| hypothetical protein TcasGA2_TC011527 [Tribolium castaneum]
          Length = 379

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 133/282 (47%), Gaps = 35/282 (12%)

Query: 27  QNFLLDLNILKKIAESSGSLDGIT----------VIEIGAGPGNLTQMLLTLGARKVIVI 76
           +NFL D  I   + ES+   D I           V E+G GPG++T+ ++    +K+IV+
Sbjct: 69  ENFLDDFEIPTTVTESAKITDKIVKAAGNIRNHYVCEVGPGPGSITRSIIRKCPKKLIVV 128

Query: 77  EKDQQFFPILKDI--SSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRIIANL 125
           EKD +F PIL+ +  +SQ   ++ I   D    +FE+ F         +   PI +I NL
Sbjct: 129 EKDPRFVPILELLQEASQSHVKMGIKIQDIRDFNFEEGFAGAPAREWTDYPPPIHLIGNL 188

Query: 126 PYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           P+++ T L+  W+ A       W     ++TL FQKEV ERI A        RLSV+  +
Sbjct: 189 PFSVSTNLIIRWLHAISEQRSAWSFGRSTMTLTFQKEVAERIVAPVTHEQRCRLSVMCQF 248

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
                  F I    F P P V   V+  +P  +P +    ++++KI +  F  R+K   +
Sbjct: 249 WCDVEHKFTIPGRAFVPKPDVDVGVVTLVPKKHPLVKLPFKTVEKILRTVFNMRQKWSIK 308

Query: 240 SLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRIT 273
              RL  E+        L   A +++ +R   +S E+F RI 
Sbjct: 309 GGGRLFPEDKRDELAVKLFALADVDSRIRPFEISNEEFARIC 350


>gi|219125196|ref|XP_002182872.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405666|gb|EEC45608.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 281

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 139/279 (49%), Gaps = 33/279 (11%)

Query: 21  PKKYMGQNFLLDLNILKKI-----AESSGSLDGIT-VIEIGAGPGNLTQMLL-TLGARKV 73
           PK+ +GQN+L D N + KI      +++     +  ++E+G G G LT  L+ T GA  +
Sbjct: 11  PKQSLGQNYLKDPNTVAKILRTFHQDATKHRPSVERILELGPGAGALTDRLVETYGAANM 70

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTR 132
             IE D++   IL++   +HP  L +   D ++V +         P+ +I NLPY I ++
Sbjct: 71  QAIELDERSVQILRE---KHPG-LRVQHADVMQVSYADLAEAEGQPLVVIGNLPYYITSQ 126

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +LF    A +      S T+  Q EVG+R+ A +++  YG LSV+       T  F I P
Sbjct: 127 ILFALADA-SHAGAVHSATVTMQWEVGQRMVAARSTKDYGILSVVFQLYADVTCHFKIPP 185

Query: 193 HVFFPSPKVTSTVI--HFIPHLNPIPCCLES---------LKKITQEAFGKRRKTLRQSL 241
            VF+P PKV S +I  HF+      P  L           L+++    F +RRKT+R SL
Sbjct: 186 TVFYPKPKVDSALIGLHFLG-----PARLRQRLAGVRPADLRRVVTSTFQQRRKTVRNSL 240

Query: 242 KRL--GGENLLHQAGIE--TNLRAENLSIEDFCRITNIL 276
           K+L  G E  + Q   E   + R E LS   F  IT +L
Sbjct: 241 KKLCQGDEFSIQQELPEDWASKRPEELSPGQFIEITRLL 279


>gi|313672734|ref|YP_004050845.1| dimethyladenosine transferase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939490|gb|ADR18682.1| dimethyladenosine transferase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 266

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 128/260 (49%), Gaps = 14/260 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL++ + ++KI +++       V+EIG G G LT  +L  GA  +  IE D  
Sbjct: 16  KKSLGQHFLINQHYIEKILDAAYVSKDSRVLEIGPGCGALTVKILERGA-DLTAIEIDAV 74

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LK     +PN  +II  D  K+D      +     ++ NLPY +   +L      +
Sbjct: 75  LVDFLKRYLHFYPN-FKIIHSDFTKIDKSL---LDGRYNVVGNLPYYVSVPIL------E 124

Query: 142 TWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 E   ++T +FQKEV +RI +  +   Y  LSV   +      +F+IS   F+P+
Sbjct: 125 KCTELIENINTMTFMFQKEVADRIISTPSKKSYSSLSVFCQYFFDIKKIFNISGGNFWPT 184

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            KV STV+HFIP         +    + + +F  +RK L+ +L  +    L+++     N
Sbjct: 185 TKVESTVLHFIPKKRQFDMDEKDFLNLVKLSFSSKRKMLKNNLHSIIDTGLINEFFKRDN 244

Query: 259 LRAENLSIEDFCRITNILTD 278
           +RAE LS+EDF    N L +
Sbjct: 245 VRAEELSVEDFINFYNFLKN 264


>gi|294790209|ref|ZP_06755367.1| dimethyladenosine transferase [Scardovia inopinata F0304]
 gi|294458106|gb|EFG26459.1| dimethyladenosine transferase [Scardovia inopinata F0304]
          Length = 376

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 148/305 (48%), Gaps = 45/305 (14%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + S     P K  GQNF++D   ++KIA  +      T+IE+G G G+LT  LL  G
Sbjct: 47  IRRLASEINTKPTKKFGQNFVIDPGTVRKIASLATGGKPRTIIEVGPGLGSLTLALLETG 106

Query: 70  ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNIS--SPIR 120
           +  V+ IE D    Q+    + +   +  +   ++  DAL+    D E+       S + 
Sbjct: 107 S-TVVSIEIDSLLAQKIPSTVHEFMPRADSHFHLVAKDALEFTPSDLEQALGGGKVSHLT 165

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+   ++ + +  D +P   +S  ++ QKEV ER+TA   S  YG  SV   W
Sbjct: 166 LAANLPYNLAVPIILSLL--DRFPTL-DSFVVMVQKEVAERLTAGPGSKIYGVPSVKLAW 222

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT----QEAFGKRRKT 236
             +A +   IS  VF+P+P V S ++ F           +SLKK+T      AF +RRKT
Sbjct: 223 YGQAKLAGTISRTVFWPAPHVDSALVQF----RRTGQRDQSLKKLTFSLIDSAFSQRRKT 278

Query: 237 LRQSLKR-------LGGE-----------------NLLHQAGIETNLRAENLSIEDFCRI 272
           L+ +LK+       +  E                 +L + +GI+ + R E LS++DF R+
Sbjct: 279 LKAALKKPLRSLCPVSPETASKAKPLSNSSPTLYSDLFNNSGIDPSRRGETLSVDDFVRL 338

Query: 273 TNILT 277
              ++
Sbjct: 339 AQSIS 343


>gi|25027528|ref|NP_737582.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314]
 gi|259507064|ref|ZP_05749964.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314]
 gi|33516940|sp|Q8FQZ5|RSMA_COREF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|23492810|dbj|BAC17782.1| putative dimethyladenosine transferase [Corynebacterium efficiens
           YS-314]
 gi|259165342|gb|EEW49896.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314]
          Length = 289

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 136/279 (48%), Gaps = 18/279 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D N +++I  ++       V+E+G G G+LT + L   
Sbjct: 15  IRALAEKLDVTPTKKLGQNFVHDPNTVRRIVTAADLTPEDHVVEVGPGLGSLT-LALVEK 73

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D +    L    + + P   ++L ++Q DALKV    F   + P  ++ANL
Sbjct: 74  AASVTAVEIDPRLAAELPATFAWRAPGLADKLTVVQKDALKVQQSDF--TTQPTALVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + ++   +P   + L ++ Q EV +R+ A   S  YG  SV   +  + +
Sbjct: 132 PYNVSVPVLLHMLA--EFPSITKVL-VMVQLEVADRLAAVPGSKIYGVPSVKASFYGEVS 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSL- 241
               I  HVF+P+P++ S ++  I    P P        +  +   AF +RRKTLR +L 
Sbjct: 189 KAGTIGKHVFWPAPQIESGLVKIIRTHTPWPQDDATRAKVWPVIDAAFLQRRKTLRAALS 248

Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                    E  L  A I+  LR E L + D+ R+  ++
Sbjct: 249 GHFGSASAAEEALRAADIDPQLRGERLDVADYVRLAGVI 287


>gi|297243121|ref|ZP_06927059.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis AMD]
 gi|296889332|gb|EFH28066.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis AMD]
          Length = 298

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 137/287 (47%), Gaps = 22/287 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   ++KI  ++G   G  V+E+G G G+LT  +L
Sbjct: 20  AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAGVKSGDIVMEVGPGLGSLTLAIL 79

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR-- 120
             GA ++  +E D    ++    +++   +   +  +I  DAL V+ +    I+   +  
Sbjct: 80  QTGA-QLTAVEIDPPLARRLPHTVEEFMPKAMQKFNVILKDALTVNADDVPQIAQAKKFT 138

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T ++   +   +     ++  ++ QKEV +R+ AQ  +  YG  SV   W
Sbjct: 139 LVANLPYNVATPIILTLLEKFS---NLQNFLVMVQKEVADRLCAQPGNKVYGTPSVKLAW 195

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-------LESLKKITQEAFGKR 233
             KA     I  +VF+P+P V S ++ F        C         E +      AF +R
Sbjct: 196 YGKAQRAGLIGRNVFWPAPNVDSALVSFTRD-----CTSKGDNNEREGVFAFIDAAFQQR 250

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           RKTL  +LK    E     +GI+   R E L+ ++F  +     D Q
Sbjct: 251 RKTLHAALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKDCQ 297


>gi|118466314|ref|YP_880398.1| dimethyladenosine transferase [Mycobacterium avium 104]
 gi|166221679|sp|A0QBW0|RSMA_MYCA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118167601|gb|ABK68498.1| dimethyladenosine transferase [Mycobacterium avium 104]
          Length = 318

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 136/283 (48%), Gaps = 19/283 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +    +  P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL  G
Sbjct: 22  IRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGSLTLALLDRG 81

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L    ++H +    RL ++  D L +  ++      P  ++ANL
Sbjct: 82  A-HVTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDEL--AEPPTAVVANL 138

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+    L + ++     P   ++T++ Q EV ER+ A+     YG  SV   +  +  
Sbjct: 139 PYNVAVPALLHLLAEF---PSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFGRVR 195

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQE---AFGKRRKTLRQSL 241
               +SP VF+P P+V S ++    +  +P P      +++ Q    AFG+RRKT R + 
Sbjct: 196 RCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPTDPAFRRQVFQLVDIAFGQRRKTCRNAF 255

Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
               G      + L  A I+   R E LSI+DF R+     D 
Sbjct: 256 VDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298


>gi|171464150|ref|YP_001798263.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193688|gb|ACB44649.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 264

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 129/263 (49%), Gaps = 17/263 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL D  I+  I         + VIEIG G G LT  LL+ L    ++ I++D 
Sbjct: 5   RKRFGQNFLQDNGIIYSIVALINPSADMRVIEIGPGLGALTLPLLSNLDHLDLLEIDRDL 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLPYNIGTRLLFN 136
             F   K++       L + + DALK DF  +    S      +++ NLPYNI + LLF+
Sbjct: 65  VAFWNEKNLQG-----LAVTEGDALKFDFLAWAQNRSTKQGLCKVVGNLPYNISSPLLFH 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +SA       +    + Q EV ER+ A+  S  + RLSV+   R    ++ ++ P  F 
Sbjct: 120 LVSA---AASIDEQVFMLQAEVVERMVAKAGSSDFSRLSVMLQARYDMELVLEVPPEAFD 176

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S V+  IP  +      E  +L+K+   AF +RRK LR +L+     + L    
Sbjct: 177 PRPKVNSAVVRMIPRRDFTLSDAEWSALEKVVAAAFSQRRKMLRTNLQDFA--DRLGLTE 234

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           +E   RA+++S++ +     +L 
Sbjct: 235 VELKARAQDISVDHYIEWAKVLA 257


>gi|167814329|ref|ZP_02446009.1| dimethyladenosine transferase [Burkholderia pseudomallei 91]
          Length = 275

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 25/275 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT----QMLLTLGAR 71
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT      L T G+ 
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS- 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLP 126
            +  +E D+    ++  +  +    LE+   DAL  DF    +I+ P     +RII NLP
Sbjct: 66  PLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFG---SIARPGDEPSLRIIGNLP 119

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     
Sbjct: 120 YNISSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDK 176

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
           + D+ P  F P PKV S ++  IPH    +P    + L ++   AF +RRK LR +L   
Sbjct: 177 LIDVPPESFQPPPKVDSAIVRMIPHAPYELPAVDPAVLGEVVTAAFSQRRKMLRNTLG-- 234

Query: 245 GGENLL--HQAGIETNLRAENLSIEDFCRITNILT 277
           G  +L+     G +   RAE++ ++++ R+   + 
Sbjct: 235 GYRDLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 269


>gi|22298201|ref|NP_681448.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1]
 gi|27151563|sp|P59157|RSMA_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|22294380|dbj|BAC08210.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1]
          Length = 265

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 124/243 (51%), Gaps = 20/243 (8%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V+EIG G G LT+ LL  GA +V+ +E D+     L+        R ++I+ D L++
Sbjct: 31  GDRVLEIGPGRGALTRPLLVSGA-EVVAVELDRDLCGQLR--RQFDSERFQLIEGDILRL 87

Query: 108 DFEKFFNISSPI---RIIANLPYNIGTRLLFNWISADTWP--PFWESLTLLFQKEVGERI 162
           D        +P+   +++AN+PYNI   LL + + +   P  P +E L LL QKE+G+R+
Sbjct: 88  DL-------APLGCNKVVANIPYNITGPLLGHLLGSIARPRRPAFERLILLVQKEIGDRL 140

Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLES 221
            A   S  YG LSV   +      +  + P  F P PKV S V+   PH   P     + 
Sbjct: 141 MASPGSKAYGALSVRVQFLATCEKVCAVPPRAFQPPPKVDSVVVCLRPHRTLPRVGSPQW 200

Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIETNLRAENLSIEDFCRITNILT 277
           L+ + ++ F  RRK L  +LK L     + QA    G + N RAE LS+ED+  ++ +L 
Sbjct: 201 LETLLKQGFATRRKMLANALKSLVEPEQVRQALLQLGRDANSRAEALSLEDWLALSEVLR 260

Query: 278 DNQ 280
             Q
Sbjct: 261 QLQ 263


>gi|295100315|emb|CBK97860.1| dimethyladenosine transferase [Faecalibacterium prausnitzii L2-6]
          Length = 283

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 134/276 (48%), Gaps = 20/276 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++T+   Y     K  GQNF+++  +  KI ++SG      V+EIG G G LT+ L    
Sbjct: 10  IRTLCEKYNFALSKGFGQNFIINPGLPPKIVDASGVDKSWGVLEIGPGIGVLTKELARRA 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIAN 124
           A KV+ IE D++  P+L +  +   N  +++  D LK D      E+F  +  P+ + AN
Sbjct: 70  A-KVVSIEVDERLPPLLAETMAGVEN-FKLVLQDVLKADLRALIEEEFPGM--PVAVCAN 125

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I + ++   +  D  P    +LT++ QKE  +R+ A   +     +S    +   +
Sbjct: 126 LPYYITSPIVMKLLG-DRLP--IRNLTVMVQKEAADRLAAAPGTRASSAISCAVSYYATS 182

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLK 242
            +MF  +P  F+P+PKVTS V+       P       +    + + AFG+RRKT   ++ 
Sbjct: 183 KLMFTAAPGSFYPAPKVTSAVVRMDIRTTPAVQVEDEDGYFALIRAAFGQRRKTAANAIA 242

Query: 243 RLGGE------NLLHQAGIETNLRAENLSIEDFCRI 272
              G         +  AG +  +R E L++EDF  +
Sbjct: 243 SGLGLPKDKVIAAIEAAGFDARIRPEALTLEDFAAV 278


>gi|289523105|ref|ZP_06439959.1| dimethyladenosine transferase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503648|gb|EFD24812.1| dimethyladenosine transferase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 278

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 135/256 (52%), Gaps = 11/256 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL+D NI + + E++   +   V+E+G G G LT+ +LT   R + VIE D+ 
Sbjct: 15  KKSLGQNFLVDPNIARWMVENAALNEDDVVLEVGPGKGMLTKEILTSQCRFLHVIEIDKT 74

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P L+ I     NR+ +I  D L ++ ++      P +++AN+PYNI T L++  I   
Sbjct: 75  LAPFLEPIVKTSKNRMSVIWGDVLTINLKELS--PPPTKVLANIPYNITTPLIWQ-ILEH 131

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P     L L+ Q E+ +R+ A+  +     + +      KA ++  + P+VF+P+PKV
Sbjct: 132 LVPLGTRELLLMLQLELAQRLCAKPKTKDRSPIGITIEKMGKAQIVKKVPPNVFWPTPKV 191

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--------RLGGENLLHQA 253
            S ++H I   +       + +++ + AF +RRKTL  +L         +     LL   
Sbjct: 192 ESAIVHIIIDKDLKLASDHTWRRLLRVAFARRRKTLANNLSCVYDFFKDKDKTSKLLDDL 251

Query: 254 GIETNLRAENLSIEDF 269
            + T +RAE L+++D+
Sbjct: 252 KLPTTVRAEELTVDDW 267


>gi|325676279|ref|ZP_08155958.1| dimethyladenosine transferase [Rhodococcus equi ATCC 33707]
 gi|325552840|gb|EGD22523.1| dimethyladenosine transferase [Rhodococcus equi ATCC 33707]
          Length = 296

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 19/279 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +   + + P K +GQNF+ D N +++I   +G     TV+E+G G G+LT  LL + 
Sbjct: 23  VRALAEEFGVRPTKQLGQNFVHDANTVRRIVTVAGVGPEDTVLEVGPGLGSLTLALLDV- 81

Query: 70  ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
             +V+ +E D +    L     D + +  +RL ++  DA++V  +     + P  ++ANL
Sbjct: 82  VDRVVAVEIDPKLAARLPATVADRAPELADRLTVVGADAMRVIPDDV--PAEPTAVVANL 139

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L +  +   +P    +L ++ Q EV +R+ A   S  YG  SV   +     
Sbjct: 140 PYNVAVPVLLHLFA--EFPSLRTALVMV-QAEVADRLAATPGSKVYGVPSVKANFFGTVK 196

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKK---ITQEAFGKRRKTLRQSL 241
               +   VF+P P+V S ++    +   P P   +  +K   +   AF +RRKTLR +L
Sbjct: 197 RAGHVGRAVFWPVPQVESGLVRIDRYEQAPWPIDADHRRKVFAVIDAAFAQRRKTLRAAL 256

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E  L  AGIE + R E L    F R+ N+
Sbjct: 257 AGWAGSPVEAERRLVAAGIEPSTRGEKLDAAAFVRLANV 295


>gi|306835652|ref|ZP_07468661.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49726]
 gi|304568496|gb|EFM44052.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49726]
          Length = 287

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 139/279 (49%), Gaps = 20/279 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     I P K +GQNFL D N +++I  ++       V+E+G G G+LT  L+   
Sbjct: 15  IRALAEKLDITPTKKLGQNFLHDPNTIRRIIAAADLDPADRVVEVGPGLGSLTLGLVET- 73

Query: 70  ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              +  +E D +    L +     ++ +  RL +++ DAL+V  E   ++++P  ++ANL
Sbjct: 74  VEDLTAVEIDPRLAAQLPETVGERAADYAERLRVVEKDALRVTSE---DVTAPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L +++  +T+P     L ++ Q EV +R+ A   S  YG  SV  G+    +
Sbjct: 131 PYNVAVPVLLHFL--ETFPSIRRVLVMV-QLEVAQRLAAAPGSKIYGVPSVKAGFYGTVS 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHF-IPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSL 241
               I  +VF+P+P + S ++   +    P P       ++  +   AF +RRKTLR +L
Sbjct: 188 QAGTIGKNVFWPAPNIASGLVRIDVFDTPPWPVDDAARAAVWPLVDAAFAQRRKTLRAAL 247

Query: 242 KRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNI 275
               G        L  AGI+   R E L++ DF R+  +
Sbjct: 248 SGHYGSGAAAEEALRAAGIDPQQRGEKLAVADFVRLAGL 286


>gi|256826937|ref|YP_003150896.1| dimethyladenosine transferase [Cryptobacterium curtum DSM 15641]
 gi|256583080|gb|ACU94214.1| dimethyladenosine transferase [Cryptobacterium curtum DSM 15641]
          Length = 296

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 137/275 (49%), Gaps = 22/275 (8%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            + + +L  + +  KK +GQ+FL++  ++++I + +       ++E+G G G LT  LL 
Sbjct: 15  RATRAVLEAHGLATKKALGQHFLINEGVVRRICDVAELSCEDDILEVGPGIGTLTVALLH 74

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLP 126
             AR+V  IE+D     +L +      +R E+I+ DAL V  +   ++S +P +++ANLP
Sbjct: 75  C-ARRVAAIERDVDLPAVLAETCDFAHDRFELIRCDALSVGPD---DLSFAPNKLVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           Y +   L+      D +  F   +S T++ Q EV +R+ A   + +YG  +V        
Sbjct: 131 YAVAATLVL-----DVFERFNSIQSATVMVQSEVADRMAAHPGTKNYGAFTVKLALFAHP 185

Query: 185 TMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
              F ++P  FFP P+V STVI        N  P      + +   AF  RRKT+  S +
Sbjct: 186 VSRFTVAPTNFFPPPRVQSTVIRLDRAEQDNLSPDERRCARMMADAAFATRRKTVANSCR 245

Query: 243 -----RLGG---ENLLHQAGIETNLRAENLSIEDF 269
                R+     + +L  + I+   R E+LS+E+F
Sbjct: 246 AYFAGRVDAASIDQVLAASNIDPRRRGESLSLEEF 280


>gi|258592924|emb|CBE69233.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [NC10 bacterium
           'Dutch sediment']
          Length = 312

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 137/285 (48%), Gaps = 22/285 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
            H  + +L  Y ++PK+ +GQ+FL+   +   I  ++       V+EIG G G LT+ L 
Sbjct: 14  GHETRALLRQYHLLPKRGLGQSFLVSPTVRDLILRAADVGPQDLVVEIGPGTGVLTEGLA 73

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRII 122
               R +I IE+D     +L +     P  + +I  DAL+ DF        P     +++
Sbjct: 74  EQAGR-LIAIERDPGLHRLLAERLGDRPT-VSLICGDALEFDFVNVCGTMCPAYTRAKLV 131

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           +NLPY++ T L+   I    +   +  L ++ Q+EV +R+ A      Y  L++   +  
Sbjct: 132 SNLPYSVATPLILQLIPLQRY---FSFLLVMVQREVAQRLLASPGEEGYSALTLRCRYEA 188

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLES---LKKITQEAFGKRRKTLR 238
             + +  +    F+P P V ST++     L P P   + S   L +I + AFG+RRK LR
Sbjct: 189 DVSAVAQVPRTAFYPKPAVDSTLVRL--DLLPGPKVTVHSPGLLFRIVRAAFGQRRKMLR 246

Query: 239 QSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            +L   G        + +L  AGI+   R E L++++F ++ + L
Sbjct: 247 NALLNAGIMTEPADLDRILADAGIDPKRRGETLNLDEFAQLADRL 291


>gi|319943018|ref|ZP_08017301.1| dimethyladenosine transferase dimethyltransferase [Lautropia
           mirabilis ATCC 51599]
 gi|319743560|gb|EFV95964.1| dimethyladenosine transferase dimethyltransferase [Lautropia
           mirabilis ATCC 51599]
          Length = 282

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 119/240 (49%), Gaps = 13/240 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M N  H          +IP+K  GQ+FL D   +  I ++     G  ++EIG G G LT
Sbjct: 1   MANHRHDAGREKRPAGVIPRKRFGQHFLADRACIDAIVQAIAPRSGDNLVEIGPGTGVLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             L+      + VIE D+   P L   ++Q+ + L ++Q D L+VDF  F      +RI+
Sbjct: 61  APLVAQTG-HITVIEIDRDLGPRL---AAQYGDALTLVQQDVLQVDFSGF---GQNLRIV 113

Query: 123 ANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
            NLPYNI + LL + I+ AD           + QKEV +RI A   S   GRL+V     
Sbjct: 114 GNLPYNISSPLLLHLIAVADRV----RDQHFMLQKEVVDRIVAGPGS-DMGRLTVFLQNH 168

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            +   +FD+ P  F P PKV S+V+  +P   P    +  L+     A+ +RRK LR++L
Sbjct: 169 YQVVKLFDVPPEAFDPPPKVDSSVVRMVPLPRPHTTAIAQLEAALAAAYAQRRKMLRRTL 228


>gi|170699175|ref|ZP_02890228.1| dimethyladenosine transferase [Burkholderia ambifaria IOP40-10]
 gi|170135900|gb|EDT04175.1| dimethyladenosine transferase [Burkholderia ambifaria IOP40-10]
          Length = 276

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 136/288 (47%), Gaps = 51/288 (17%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR---- 71
           H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A     
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIARLATPESP 66

Query: 72  -KVIVIEKD------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----I 119
              + +++D      Q+F P+L           E+   DAL  DF    ++++P     +
Sbjct: 67  LHAVELDRDLIGRLQQRFGPLL-----------ELHAGDALAFDFR---SLAAPGDKPSL 112

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSV 176
           RI+ NLPYNI + LLF+ ++      F +++     + Q EV ER+ A+  +  + RLSV
Sbjct: 113 RIVGNLPYNISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSV 166

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEA 229
           +  +R     M D+ P  F P PKV S ++  IP+       ++P+      L ++   A
Sbjct: 167 MLQYRYVMEKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEVVTAA 221

Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           F +RRK LR +L            G +   RAE++S+ ++  +   L 
Sbjct: 222 FSQRRKMLRNTLGDYRETIDFDGLGFDLARRAEDVSVAEYVGVAQALA 269


>gi|78067504|ref|YP_370273.1| dimethyladenosine transferase [Burkholderia sp. 383]
 gi|119365010|sp|Q39D37|RSMA_BURS3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|77968249|gb|ABB09629.1| dimethyladenosine transferase [Burkholderia sp. 383]
          Length = 275

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 134/280 (47%), Gaps = 35/280 (12%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L   L      
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVSTIGPARGQRMVEIGPGLGALTEPLIERLATPESP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+    ++  +  +    LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 67  LHAVELDRD---LIGRLQQRFGALLELHAGDALAFDFR---SLAAPGDKPSLRIVGNLPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           NI + LLF+ ++      F +++     + Q EV ER+ A+  +  + RLSV+  +R   
Sbjct: 121 NISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVM 174

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTL 237
             M D+ P  F P PKV S ++  IP+       ++P+      L ++   AF +RRK L
Sbjct: 175 EKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEVVTAAFSQRRKML 229

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           R +L            G +   RAE++S+ ++  +   L 
Sbjct: 230 RNTLGDYRETIDFDALGFDLARRAEDVSVAEYVGVAQALA 269


>gi|256370598|ref|YP_003108423.1| dimethyladenosine transferase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009390|gb|ACU52750.1| dimethyladenosine transferase [Candidatus Sulcia muelleri SMDSEM]
          Length = 251

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 131/257 (50%), Gaps = 21/257 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ FL D NI +KI  S       T++EIG G G LTQ LL L ++ V +IE D++
Sbjct: 4   KKKLGQYFLHDKNIAQKIVNSISFKK--TIVEIGPGMGMLTQYLL-LKSKNVFLIEIDKK 60

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPYNIGTRLLFN 136
           +   LK        +  II+++   ++F     +++F   S   +I N PYNI +++LF 
Sbjct: 61  YVFFLKK-------KFSIIKNNIFNLNFLNWNPQEYF--LSSFTLIGNFPYNISSQILFK 111

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I    + P  E + + FQKEV ERIT++     YG+LSV+     K   +F ++ +VF 
Sbjct: 112 IIKYREYIP--ECIGM-FQKEVAERITSKNKKKSYGKLSVIMQTFYKIEYLFTVNNNVFI 168

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S V+  +               I + AF  RRK L  SLK L      ++  I 
Sbjct: 169 PKPRVKSAVVKMLKKKLNFKIKESIFFNIVKTAFLYRRKKLLNSLKILSFSTEFYKLPI- 227

Query: 257 TNLRAENLSIEDFCRIT 273
            N R E LS+ DF  +T
Sbjct: 228 LNKRVEQLSVNDFILLT 244


>gi|240169906|ref|ZP_04748565.1| dimethyladenosine transferase [Mycobacterium kansasii ATCC 12478]
          Length = 317

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 133/276 (48%), Gaps = 19/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +    +  P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL  G
Sbjct: 22  IRRLAKELEFRPRKSLGQNFVHDANTVRRVVAASGITRADQVLEVGPGLGSLTLALLDRG 81

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L    ++H +    RL ++  D L +  +   +   P  ++ANL
Sbjct: 82  A-TVTAVEIDPVLAARLPQTVAEHSHSEIQRLTVLNRDILSLRPQDLAD--EPTAVVANL 138

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+    L + ++     P    +T++ Q EV ER+ A+     YG  SV   +  +  
Sbjct: 139 PYNVAVPALLHLLAEF---PSIRVVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFHGRVR 195

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIP---CCLESLKKITQEAFGKRRKTLRQSL 241
               +SP VF+P P+V S ++    +  +P P      + + ++   AF +RRKT R + 
Sbjct: 196 RCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDGAFRQQVFELVDIAFAQRRKTSRNAF 255

Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
            +  G      N L  A I+   R E LSI DF R+
Sbjct: 256 AQWAGSGNESANRLLAASIDPARRGETLSIADFVRL 291


>gi|224541089|ref|ZP_03681628.1| hypothetical protein CATMIT_00240 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526013|gb|EEF95118.1| hypothetical protein CATMIT_00240 [Catenibacterium mitsuokai DSM
           15897]
          Length = 272

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/267 (34%), Positives = 139/267 (52%), Gaps = 21/267 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGAR 71
           IL+ + + P K  GQNFL+D  I++ IA+ + SLD  T VIEIG G G LT+  L+  A 
Sbjct: 13  ILNTFNLKPSKKYGQNFLVDPGIIQSIADHA-SLDKETAVIEIGPGIGALTEQ-LSNKAG 70

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE---KFFNISSPIRIIANLPYN 128
           KV+  E D++   +L      H N +EII  D +K D E   K       I ++ NLPY 
Sbjct: 71  KVLCFEIDERLKEVLSFSLEGHDN-VEIIFQDFMKADLEEACKKLKNYKDICVVTNLPYY 129

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I ++++   +S+ T  P    L  + QKEV  ++ +++ SP    L ++  +        
Sbjct: 130 ITSKIITKIVSSST--PI-NRLVAMVQKEVALKLCSEEKSP----LKMMIDYVGDVQYEL 182

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL---G 245
           ++  HVF P+P V S VI    H   +    + L  + + ++  +RKTL  +LK L    
Sbjct: 183 NVPRHVFMPAPHVDSAVISI--HKERVIS--QELIDLIEASYTAKRKTLYNNLKSLYHDQ 238

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRI 272
            + LL   GI  N RAE L+I+D+ RI
Sbjct: 239 TKELLESCGIPANKRAEELNIDDYIRI 265


>gi|270284640|ref|ZP_05966446.2| dimethyladenosine transferase [Bifidobacterium gallicum DSM 20093]
 gi|270276584|gb|EFA22438.1| dimethyladenosine transferase [Bifidobacterium gallicum DSM 20093]
          Length = 319

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 134/277 (48%), Gaps = 19/277 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P K  GQNF++D   +++I   +G   G  V+E+G G G+LT  LL   A  V  +E 
Sbjct: 47  ISPTKKFGQNFVIDPGTVRRIVREAGVGAGDRVLEVGPGLGSLTLALLETRAH-VTAVEI 105

Query: 79  DQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTR 132
           D      L + I    P   +R  +I +DALKV   +   F    P  ++ANLPYN+ T 
Sbjct: 106 DPPVAERLPRTIGEFMPDALDRFRVINEDALKVSAAQLPEFADGEPFTLVANLPYNVATP 165

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++   +  + +P   + L ++ QKEV +R+ A   S  YG  SV   W   A     +  
Sbjct: 166 IVLTLL--ERFPNLTKFLVMV-QKEVADRLCADPGSKIYGTPSVKLAWYGTAERAGLVGR 222

Query: 193 HVFFPSPKVTSTVIHF-------IPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR 243
           +VF+P+P V S ++ F       +         ++   + ++   AFG+RRKTL  +LK+
Sbjct: 223 NVFWPAPNVDSALVLFERAEGGDVTANGAYGTDVDRAFVFELIDAAFGQRRKTLHAALKK 282

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                   +A I+   R E L+I +F R+   + D Q
Sbjct: 283 QVPAAAFERAQIDATRRGETLTIGEFIRLAQAVRDVQ 319


>gi|119718076|ref|YP_925041.1| dimethyladenosine transferase [Nocardioides sp. JS614]
 gi|119538737|gb|ABL83354.1| dimethyladenosine transferase [Nocardioides sp. JS614]
          Length = 297

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 135/280 (48%), Gaps = 24/280 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I   +G      V+E+G G G+LT  LL + 
Sbjct: 16  VRLLAAELDLRPTKQRGQNFVIDANTVRRIVREAGVTAEDVVLEVGPGLGSLTLALLAVA 75

Query: 70  ARKVIVIEKDQQFFPILKD-----ISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRI 121
            R V+ +E D    P+L       I++  P   +R E++  DA+++   +     +P  +
Sbjct: 76  GR-VVAVEVD----PVLAGRLPATIAAYAPAQADRFEVVLGDAMRI---QEVPGPTPTAL 127

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   +L + ++        E   ++ Q EV +R+ A   S  YG  SV   W 
Sbjct: 128 VANLPYNVSVPVLLHLLTLLP---SLERGLVMVQAEVADRLAAAPGSKVYGVPSVKAAWF 184

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQS 240
                   +  +VF+P+P V S ++ +     P      E +  +   AF +RRK LR  
Sbjct: 185 ADVRRAGAVGRNVFWPAPNVDSGLVAWSRREPPATTATREQVFAVVDAAFAQRRKALRGV 244

Query: 241 LKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L+ L      +  L  AG++   R E+L +EDF R+   L
Sbjct: 245 LRSLAPAESVDAALAGAGVDPLARGESLRVEDFARLAERL 284


>gi|91772907|ref|YP_565599.1| dimethyladenosine transferase [Methanococcoides burtonii DSM 6242]
 gi|118600877|sp|Q12XH7|RSMA_METBU RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|91711922|gb|ABE51849.1| dimethyladenosine transferase [Methanococcoides burtonii DSM 6242]
          Length = 270

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 130/265 (49%), Gaps = 34/265 (12%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D   L  I + +   +   V+EIG G GNLT+ LL   A KV VIE D     +L
Sbjct: 18  QHFLIDERSLDSIVDQAELSEKDVVLEIGGGIGNLTERLLE-KAGKVYVIELDPALVHVL 76

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           KD  S +  +LEII  D LK+D  KF       +++ANLPY+I + + F     +     
Sbjct: 77  KDRFSDN-EKLEIIPGDVLKLDLPKFN------KVVANLPYSISSPITFKLFKHE----- 124

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
           +E   L++Q E  +R+ A+ N+ +Y RLSV T +   A ++  I P  F P P+V S V+
Sbjct: 125 FELGILMYQYEFAQRMVAKANTENYSRLSVNTHYFADADIIMKIPPSAFSPPPEVWSAVV 184

Query: 207 HFIPHLNPIPCCLES-----LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE----- 256
             +P     P    +        +    F +RRK LR ++  + G +LL+   I+     
Sbjct: 185 KVVPR----PSSFHTEDPQFFLDLVTAVFLQRRKKLRNAI--VKGNHLLNVPNIKQIVAE 238

Query: 257 -----TNLRAENLSIEDFCRITNIL 276
                 + RAENL   +   I N +
Sbjct: 239 LPEEFMSKRAENLEPHELAEIANFI 263


>gi|83749340|ref|ZP_00946337.1| Dimethyladenosine transferase [Ralstonia solanacearum UW551]
 gi|83724018|gb|EAP71199.1| Dimethyladenosine transferase [Ralstonia solanacearum UW551]
          Length = 281

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 124/261 (47%), Gaps = 15/261 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+  +   +V+ +++D 
Sbjct: 15  RKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRD- 73

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS- 139
               ++  +  +  ++L +   DAL  DF         +RI+ NLPYNI + LLF+  + 
Sbjct: 74  ----LVARLQRRFGDKLVVHAGDALAFDFGALHVPGRSLRIVGNLPYNISSPLLFHLSAF 129

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           AD           + QKEV ER+ A   S  + RLSV+   R    ++ D+ P  F P P
Sbjct: 130 ADRV----RDQHFMLQKEVVERMVAVPGSKAFSRLSVMLQVRYYMELVLDVPPGSFNPPP 185

Query: 200 KVTSTVIHFIP-HLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           KV S V+  IP   +  P  L    +L  +   AF +RRK LR +L  L         G 
Sbjct: 186 KVDSAVVRMIPWPADKSPYALVDMRALGTVVTLAFSQRRKVLRNTLGSLREAIDFDALGF 245

Query: 256 ETNLRAENLSIEDFCRITNIL 276
           +   RAE + + DF  + N L
Sbjct: 246 DLGRRAEEVPVADFVAVANAL 266


>gi|227501495|ref|ZP_03931544.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49725]
 gi|227077520|gb|EEI15483.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49725]
          Length = 287

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 142/280 (50%), Gaps = 22/280 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTL 68
           ++ +     I P K +GQNFL D N +++I  ++  LD    V+E+G G G+LT  L+  
Sbjct: 15  IRALAEKLDITPTKKLGQNFLHDPNTIRRII-AAADLDPTDHVVEVGPGLGSLTLGLVET 73

Query: 69  GARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
             + +  +E D +    L +     +  +  RL +++ DAL+V  E   ++++P  ++AN
Sbjct: 74  -VQDLTAVEIDPRLAAQLPETVGERAEDYAKRLRVVEKDALRVTSE---DVAAPTALVAN 129

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L +++  +T+P     L ++ Q EV +R+ A+  S  YG  SV  G+    
Sbjct: 130 LPYNVAVPVLLHFL--ETFPSIRRVLVMV-QLEVAQRLAAEPGSKIYGVPSVKAGFYGAV 186

Query: 185 TMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIP---CCLESLKKITQEAFGKRRKTLRQS 240
           +    I  +VF+P+P + S ++   +    P P       ++  +   AF +RRKTLR +
Sbjct: 187 SQAGTIGKNVFWPAPNIASGLVRIDVFDTPPWPVDDAARAAVWPLVDAAFAQRRKTLRAA 246

Query: 241 LKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNI 275
           L    G        L  AGI+   R E L++ DF R+  +
Sbjct: 247 LSGHYGSGAAAEEALRAAGIDPKQRGEKLAVADFVRLAGL 286


>gi|73748246|ref|YP_307485.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1]
 gi|119365021|sp|Q3ZZE6|RSMA_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|73659962|emb|CAI82569.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1]
          Length = 291

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 138/270 (51%), Gaps = 15/270 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y +  +K +GQ+FL+   +L KI  ++      TVIE+G G G LT+ LL   A
Sbjct: 20  KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGALTEELLKR-A 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +VI +E D +    L +    +PN   +I  D LK   E+      P +++ANLPY I 
Sbjct: 79  GQVIAVELDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQDVPYKLVANLPYYIT 137

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +L  ++ A   P   ES+ ++ QKEV + I A+      G L++   +    +++  +
Sbjct: 138 SAVLRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTG--DMGLLTLSVRFYGNPSLVSVV 192

Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246
               F+P P+V S ++   IP    +    E    K+ +  FG RRKTL  +L +  G  
Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRI 272
                +LL+ AGI+   RAE LS+E++ ++
Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKL 282


>gi|258406021|ref|YP_003198763.1| dimethyladenosine transferase [Desulfohalobium retbaense DSM 5692]
 gi|257798248|gb|ACV69185.1| dimethyladenosine transferase [Desulfohalobium retbaense DSM 5692]
          Length = 272

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 133/261 (50%), Gaps = 19/261 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+ +GQNFL+D N ++ I  +  +  G  V EIG G G LT+ +L  G  +V V+EKD+ 
Sbjct: 21  KRSLGQNFLVDPNTIRAIIGALRASPGDRVFEIGPGRGALTEEMLGQGL-EVSVLEKDRV 79

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L D   +HP  L +I  DA++  +E    I    R+I NLPYN+ + ++++ ++  
Sbjct: 80  LARYLAD---RHPQ-LRVIVGDAMQFAWE---GIRGDWRVIGNLPYNVASPIIWDLVART 132

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD--ISPHVFFPSP 199
              P    +    QKEV +R+ A   S  YG LSV    +T A + ++  +  +VF P P
Sbjct: 133 ---PAARRMVFTVQKEVAQRLCAAPGSRAYGALSVWV--QTFAGVHYERTLGGNVFRPRP 187

Query: 200 KVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255
           KV S V+   P    +     E+L ++ +  F KRRK L   LK +     E  L   G+
Sbjct: 188 KVDSAVVSLDPAGRSLSQAQQEALGQVLRVCFQKRRKQLGSILKSVWSPELEAWLEAQGL 247

Query: 256 ETNLRAENLSIEDFCRITNIL 276
           +  +R E LS E F  +  ++
Sbjct: 248 DRRVRPEALSPEAFLELARLV 268


>gi|149277463|ref|ZP_01883604.1| dimethyladenosine transferase [Pedobacter sp. BAL39]
 gi|149231696|gb|EDM37074.1| dimethyladenosine transferase [Pedobacter sp. BAL39]
          Length = 260

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 126/258 (48%), Gaps = 10/258 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK++GQ+FL D  I  +I +     D    V+E+G G G L+ +LL        +I+ D 
Sbjct: 7   KKHLGQHFLTDKKIAARIVDGLVHTDQYREVLEVGPGMGILSDILLDRDYLDTFLIDIDV 66

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           + +  LKD   Q   RL  I  D L +D    F       +I N PYNI +++LF  +  
Sbjct: 67  ESYEFLKDKYPQLGARL--INGDFLALDLSSIFK--GKYAVIGNFPYNISSQILFKIL-- 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D      E +  +FQKEV ER  ++  +  YG LSVL         +F + P  F P PK
Sbjct: 121 DNREHVVE-MVGMFQKEVAERCASKSGTKEYGILSVLIQAYYDIEYLFTVKPGTFNPPPK 179

Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    + ++ +PC  +   +  +  F +RRKTLR +L  +  ++ +       + 
Sbjct: 180 VNSGVIRLSRNKIDTLPCDEKLFWRTVKAGFNQRRKTLRNALSGVVSKDRMDDHFF-FDK 238

Query: 260 RAENLSIEDFCRITNILT 277
           RAE LS++ F  +T  LT
Sbjct: 239 RAEQLSVDQFIELTQHLT 256


>gi|226307847|ref|YP_002767807.1| dimethyladenosine transferase [Rhodococcus erythropolis PR4]
 gi|229494958|ref|ZP_04388709.1| dimethyladenosine transferase [Rhodococcus erythropolis SK121]
 gi|259494255|sp|C1A383|RSMA_RHOE4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226186964|dbj|BAH35068.1| dimethyladenosine transferase [Rhodococcus erythropolis PR4]
 gi|229318182|gb|EEN84052.1| dimethyladenosine transferase [Rhodococcus erythropolis SK121]
          Length = 299

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 135/278 (48%), Gaps = 19/278 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +   + + P K +GQNF+ D N +++I  ++G      V+E+G G G+LT  L+ + 
Sbjct: 26  VRALAEEFGVRPTKQLGQNFVHDANTVRRIVTTAGVTRDDVVLEVGPGLGSLTMALMDV- 84

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
             +VI +E D      L K ++ + P   +RL +++ DA++V   +      P  ++ANL
Sbjct: 85  VDRVIAVEIDPNLAARLPKTVAERAPELADRLTVVEADAMRVLPSQIPG--EPTALVANL 142

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L +  ++    P   +  ++ Q EV +R+ A   S  YG  SV   +  +  
Sbjct: 143 PYNVAVPVLLHLFASL---PSLRTALVMVQAEVADRLAADPGSKIYGVPSVKANFFGEVR 199

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKI---TQEAFGKRRKTLRQSL 241
               +  +VF+P PKV S ++    +  P  P   +  K++      AF +RRKTLR +L
Sbjct: 200 RAGAVGRNVFWPVPKVESGLVRIDRYAEPPWPMDEKHRKQVFAAIDAAFAQRRKTLRAAL 259

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
               G     E  L  AGIE   R E L    F R+  
Sbjct: 260 SGWAGSPAEAERRLLAAGIEPQTRGEMLDAAAFVRLAG 297


>gi|84996835|ref|XP_953139.1| dimethyladenosine transferase [Theileria annulata strain Ankara]
 gi|65304135|emb|CAI76514.1| dimethyladenosine transferase, putative [Theileria annulata]
          Length = 377

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 12/226 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KKY GQ+ L +  +L KI +++      TV+EIG G GN T  L+TL A+KV+ I+ 
Sbjct: 69  IFVKKY-GQHMLKNPGVLDKIIKAAEIRPTDTVLEIGPGTGNWTVRLVTL-AKKVVAIDV 126

Query: 79  DQQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D +    +K+   Q     LE+I+ DAL+  F +F +I      +ANLP+ I +  +F  
Sbjct: 127 DSRMISEVKNRCFQLGYTNLEVIEADALRTTFPRF-DIC-----MANLPFQISSPFIFKL 180

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +S     P + S  L+FQKE  ER+ A  N   YGRL++ T      T +  IS   F P
Sbjct: 181 LSHR---PLFRSAILVFQKEFAERLLASTNDDKYGRLAINTRLFCTVTRICKISAGSFNP 237

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            PKV S V+  +P   P+         + +  F ++R+TLR   K+
Sbjct: 238 PPKVDSMVVKIVPRQQPLVVDFGEWDGMIRICFSRKRRTLRSLFKK 283


>gi|172061667|ref|YP_001809319.1| dimethyladenosine transferase [Burkholderia ambifaria MC40-6]
 gi|226729761|sp|B1YWD5|RSMA_BURA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|171994184|gb|ACB65103.1| dimethyladenosine transferase [Burkholderia ambifaria MC40-6]
          Length = 273

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 136/288 (47%), Gaps = 51/288 (17%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR---- 71
           H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A     
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESP 66

Query: 72  -KVIVIEKD------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----I 119
              + +++D      Q+F P+L           E+   DAL  DF    ++++P     +
Sbjct: 67  LHAVELDRDLIGRLQQRFGPLL-----------ELHAGDALAFDFR---SLAAPGDKPSL 112

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSV 176
           RI+ NLPYNI + LLF+ ++      F +++     + Q EV ER+ A+  +  + RLSV
Sbjct: 113 RIVGNLPYNISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSV 166

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEA 229
           +  +R     M D+ P  F P PKV S ++  IP+       ++P+      L ++   A
Sbjct: 167 MLQYRYVMEKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEVVTAA 221

Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           F +RRK LR +L            G +   RAE++S+ ++  +   L 
Sbjct: 222 FSQRRKMLRNTLGDYRETIDFDGLGFDLARRAEDVSVAEYVGVAQALA 269


>gi|308807535|ref|XP_003081078.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri]
 gi|116059540|emb|CAL55247.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri]
          Length = 363

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 136/272 (50%), Gaps = 19/272 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++++GQ+FL+D +++    E++   +G  V+EIG G GNLT  LL+ GA  V+ +EKD+ 
Sbjct: 85  RRWLGQHFLIDASVVTDAVEAARLNEGDRVLEIGPGTGNLTCELLSRGA-NVLAVEKDRN 143

Query: 82  FFPIL-KDISSQHPNRLEIIQDDALKVD-FEKFFNISSP----IRIIANLPYNIGTRLLF 135
               L K +  +H   L +++ D LK D     F  +SP     +++AN+PYNI T +L 
Sbjct: 144 LAEKLRKGLCVEHGEALRLVEGDFLKWDGLAAAFARTSPEQPRAKVVANIPYNITTDVLK 203

Query: 136 NWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
             +        +E +  +FQ+EV +R +        Y  +SV   + +K   +  + P  
Sbjct: 204 VLLPMGD---VFEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYSKPYYIRFVPPTC 260

Query: 195 FFPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           F P P V S +I F P     L P+           Q  F ++RK LR +LK +  EN +
Sbjct: 261 FMPPPNVDSCLIGFKPKEPHELLPLNGTENQFFTFVQACFAQKRKMLRNNLKAVCEENTM 320

Query: 251 HQA----GIETNLRAENLSIEDFCRITNILTD 278
             A         +R + L++E++ R+ N + +
Sbjct: 321 EGAFAMLDRGDKIRPQELTMEEYVRLFNFVRE 352


>gi|171317313|ref|ZP_02906509.1| dimethyladenosine transferase [Burkholderia ambifaria MEX-5]
 gi|171097512|gb|EDT42350.1| dimethyladenosine transferase [Burkholderia ambifaria MEX-5]
          Length = 276

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 136/288 (47%), Gaps = 51/288 (17%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR---- 71
           H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A     
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESP 66

Query: 72  -KVIVIEKD------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----I 119
              + +++D      Q+F P+L           E+   DAL  DF    ++++P     +
Sbjct: 67  LHAVELDRDLIGRLQQRFGPLL-----------ELHAGDALAFDFR---SLAAPGDKPSL 112

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSV 176
           RI+ NLPYNI + LLF+ ++      F +++     + Q EV ER+ A+  +  + RLSV
Sbjct: 113 RIVGNLPYNISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSV 166

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEA 229
           +  +R     M D+ P  F P PKV S ++  IP+       ++P+      L ++   A
Sbjct: 167 MLQYRYVMEKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEVVTAA 221

Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           F +RRK LR +L            G +   RAE++S+ ++  +   L 
Sbjct: 222 FSQRRKMLRNTLGDYRETIDFDGLGFDLARRAEDVSVAEYVGVAQALA 269


>gi|271969807|ref|YP_003344003.1| dimethyladenosine transferase [Streptosporangium roseum DSM 43021]
 gi|270512982|gb|ACZ91260.1| dimethyladenosine transferase [Streptosporangium roseum DSM 43021]
          Length = 281

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 130/275 (47%), Gaps = 15/275 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     I P K +GQNF++D   +++I   +G      VIE+G G G+LT  LL   
Sbjct: 9   IRNLAEKLDIRPTKKLGQNFVIDGGTVRRIVRVAGLRPDDVVIEVGPGLGSLTLALLP-E 67

Query: 70  ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            R V+ +E D     Q    + + + +   RL ++  DA++V  E       P  ++ANL
Sbjct: 68  VRGVVAVEIDPVLAAQLPLTVAERAPEFAERLTVVLADAMRVLPEDLPE-DLPTALVANL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + +  +T P    ++ ++ Q EV +R+ A   S  YG  SV   W     
Sbjct: 127 PYNVSVPVVLHLL--ETLPSL-RTILIMVQSEVADRLAAAPGSKIYGIPSVKAAWYADVR 183

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
               +   VF+P P V S ++       P      E +  +   AF +RRKTLR +L   
Sbjct: 184 RAGPVGRTVFWPVPNVDSGLVAMTRREPPSTRAAREDVFAVVDAAFAQRRKTLRAALASW 243

Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
            G     E  L  AGI+ + R E L++EDF RI  
Sbjct: 244 AGTPAAAEQALRAAGIDPSERGEQLTVEDFARIAE 278


>gi|302342375|ref|YP_003806904.1| dimethyladenosine transferase [Desulfarculus baarsii DSM 2075]
 gi|301638988|gb|ADK84310.1| dimethyladenosine transferase [Desulfarculus baarsii DSM 2075]
          Length = 284

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 134/281 (47%), Gaps = 20/281 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L    +   K  GQNFL      + I  S+       V+EIG G G LT     L +
Sbjct: 4   RLLLERLGLHASKARGQNFLTQPATAQAIVASAAIGPEDFVVEIGPGLGALTVAAGRLAS 63

Query: 71  RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYN 128
           R V+ +E D+     L D+ ++     +E    DAL +D+      +  P+ +I NLPYN
Sbjct: 64  R-VLAVEIDRGVHRALMDVLAEEGLQNVEARLMDALDLDWPATREQAGRPLVVIGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + LLF  ++A    P W + TL+ QKEV  R+ A+     +GRL V+     +     
Sbjct: 123 ITSPLLFALLAAA---PCWRAATLMVQKEVATRLAAKPGGKDWGRLGVMVQSLCQVRAGV 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLKRL 244
            +S   FFP P V+S ++H  P   P+P  L        ++ + AFG+RRKT+  +L   
Sbjct: 180 TLSRGQFFPEPNVSSQIVHLTPLEQPLPAALGLSQAWFGQVVKAAFGQRRKTVANALA-- 237

Query: 245 GG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           GG        E+ L +A +  + RAE LSI +   I   LT
Sbjct: 238 GGLGLERGRVEDALGRAAVAPSRRAETLSIAELGAIALALT 278


>gi|115352811|ref|YP_774650.1| dimethyladenosine transferase [Burkholderia ambifaria AMMD]
 gi|122322257|sp|Q0BC07|RSMA_BURCM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115282799|gb|ABI88316.1| dimethyladenosine transferase [Burkholderia ambifaria AMMD]
          Length = 276

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 51/294 (17%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR---- 71
           H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A     
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESP 66

Query: 72  -KVIVIEKD------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----I 119
              + +++D      Q+F P+L           E+   DAL  DF    ++++P     +
Sbjct: 67  LHAVELDRDLIGRLQQRFGPLL-----------ELHAGDALAFDFR---SLAAPGDKPSL 112

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSV 176
           RI+ NLPYNI + LLF+ ++      F +++     + Q EV ER+ A+  +  + RLSV
Sbjct: 113 RIVGNLPYNISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSV 166

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEA 229
           +  +R     M D+ P  F P PKV S ++  IP+       ++P+      L ++   A
Sbjct: 167 MLQYRYVMEKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGELVTAA 221

Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           F +RRK LR +L            G +   RAE++S+ ++  +   L   +  A
Sbjct: 222 FSQRRKMLRNTLGDYRETIDFDGLGFDLARRAEDVSVAEYVGVAQALAARRKAA 275


>gi|167585502|ref|ZP_02377890.1| dimethyladenosine transferase [Burkholderia ubonensis Bu]
          Length = 275

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 126/277 (45%), Gaps = 39/277 (14%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA----- 70
           H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A     
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIARLATPESP 66

Query: 71  ------RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRII 122
                  + +++   Q+F P+L           E+   DAL  DF           +RI+
Sbjct: 67  LHAVELDRDLIVRLQQRFGPLL-----------ELHAGDALAFDFRSLAAAGDKPSLRIV 115

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R 
Sbjct: 116 GNLPYNISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRY 172

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRK 235
               M D+ P  F P PKV S ++  IP+       ++P+      L ++   AF +RRK
Sbjct: 173 VMDKMMDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEVVTAAFSQRRK 227

Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272
            LR +L            G +   RAE++S+ ++  +
Sbjct: 228 MLRNTLGDYRETVDFDALGFDLARRAEDVSVAEYVGV 264


>gi|325270787|ref|ZP_08137378.1| dimethyladenosine transferase [Prevotella multiformis DSM 16608]
 gi|324986903|gb|EGC18895.1| dimethyladenosine transferase [Prevotella multiformis DSM 16608]
          Length = 290

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 133/262 (50%), Gaps = 15/262 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL+DL+I ++IA++  +   I ++EIG G G LTQ L+    R+V  +E 
Sbjct: 4   VKPKKNLGQHFLVDLSIARRIADTVDACPDIPILEIGPGMGVLTQYLVG-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D +    L +   + P   E I+ +D L++D  + F+      +  N PY+I +++ F  
Sbjct: 63  DAESVAYLYE---KFPTLHEHILGEDFLRMDLSQVFD-GRQFVLTGNYPYDISSQIFFKM 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P     T + Q+EV  R+ A   S  YG LSVL         +F +  +VF P
Sbjct: 119 LDYKDLIP---CCTGMIQREVALRMAAGPGSKAYGILSVLMQAWYDVEYLFTVDENVFNP 175

Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLHQ 252
            PKV S VI    + +  + C  +  K++ +  F +RRK LR SL++L       +  + 
Sbjct: 176 PPKVKSAVIRMTRNGVTDLGCDGQLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPADSFYA 235

Query: 253 AGIETNLRAENLSIEDFCRITN 274
             I T  R E LSI  F  +TN
Sbjct: 236 QDIMTK-RPEQLSIPQFVELTN 256


>gi|312138652|ref|YP_004005988.1| rRNA dimethyladenosine transferase ksga [Rhodococcus equi 103S]
 gi|311887991|emb|CBH47303.1| rRNA dimethyladenosine transferase KsgA [Rhodococcus equi 103S]
          Length = 292

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 19/279 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +   + + P K +GQNF+ D N +++I   +G     TV+E+G G G+LT  LL + 
Sbjct: 19  VRALAEEFGVRPTKQLGQNFVHDANTVRRIVTVAGVGPEDTVLEVGPGLGSLTLALLDV- 77

Query: 70  ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
             +V+ +E D +    L     D + +  +RL ++  DA++V  +     + P  ++ANL
Sbjct: 78  VDRVVAVEIDPKLAARLPATVADRAPELVDRLTVVGADAMRVMPDDV--PAEPTAVVANL 135

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L +  +   +P    +L ++ Q EV +R+ A   S  YG  SV   +     
Sbjct: 136 PYNVAVPVLLHLFA--EFPSLRTALVMV-QAEVADRLAATPGSKVYGVPSVKANFFGTVK 192

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKK---ITQEAFGKRRKTLRQSL 241
               +   VF+P P+V S ++    +   P P   +  +K   +   AF +RRKTLR +L
Sbjct: 193 RAGHVGRAVFWPVPQVESGLVRIDRYEQAPWPIDADHRRKVFAVIDAAFAQRRKTLRAAL 252

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E  L  AGIE + R E L    F R+ N+
Sbjct: 253 AGWAGSPVEAERRLVAAGIEPSTRGEKLDAAAFVRLANV 291


>gi|226365142|ref|YP_002782925.1| dimethyladenosine transferase [Rhodococcus opacus B4]
 gi|254807880|sp|C1AXY5|RSMA_RHOOB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226243632|dbj|BAH53980.1| dimethyladenosine transferase [Rhodococcus opacus B4]
          Length = 296

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 133/277 (48%), Gaps = 19/277 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +   + + P K +GQNF+ D N +++I  ++G     TV+E+G G G+LT  LL + 
Sbjct: 22  VRALAEEFGVRPTKQLGQNFVHDANTVRRIVATAGVGREDTVLEVGPGLGSLTLALLDV- 80

Query: 70  ARKVIVIEKDQQF---FPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
             +VI +E D       P+ + D +    +RL ++  DA++V   +      P  ++ANL
Sbjct: 81  VDRVIAVEIDPNLAARLPVTVADRAPDLADRLTVVGADAMRVKPSEIPG--EPTALVANL 138

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L +  S     P   +  ++ Q EV +R+ A   S  YG  SV   +     
Sbjct: 139 PYNVAVPVLLHLFSEL---PSLRTALVMVQAEVADRLAASPGSKIYGVPSVKANFFGAVR 195

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKK---ITQEAFGKRRKTLRQSL 241
               +   VF+P PKV S ++    +  P  P   E+ ++   +   AF +RRKTLR +L
Sbjct: 196 RAGAVGRAVFWPVPKVESGLVRIDRYAEPPWPVDDENRRRVFAVIDAAFAQRRKTLRAAL 255

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
               G     E  L +AGI  + R E L    F R+ 
Sbjct: 256 GGWAGSPAEAERRLLEAGIPPSSRGETLDAAAFVRLA 292


>gi|254247259|ref|ZP_04940580.1| Dimethyladenosine transferase [Burkholderia cenocepacia PC184]
 gi|124872035|gb|EAY63751.1| Dimethyladenosine transferase [Burkholderia cenocepacia PC184]
          Length = 275

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 132/277 (47%), Gaps = 29/277 (10%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT  L   L      
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTGPLIERLATPESP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+    ++  +  +    LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 67  LHAVELDRD---LIGRLQQRFGALLELHAGDALAFDFR---SLAAPGDKPSLRIVGNLPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           NI + LLF+ ++      F +++     + Q EV ER+ A+  +  + RLSV+  +R   
Sbjct: 121 NISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVM 174

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             M D+ P  F P PKV S ++  IP+    L  +   L  L +I   AF +RRK LR +
Sbjct: 175 EKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPAL--LGEIVTAAFSQRRKMLRNT 232

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L            G +   RAE++S+ ++  +   L 
Sbjct: 233 LGDYRETIDFDALGFDLARRAEDVSVAEYVGVAQALA 269


>gi|269796309|ref|YP_003315764.1| dimethyladenosine transferase [Sanguibacter keddieii DSM 10542]
 gi|269098494|gb|ACZ22930.1| dimethyladenosine transferase [Sanguibacter keddieii DSM 10542]
          Length = 320

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 140/298 (46%), Gaps = 29/298 (9%)

Query: 1   MTMNNKSHSL------KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEI 54
           M MN+ S++L      + +     + P K +GQNF+ D   ++KI  S+G   G  V+E+
Sbjct: 1   MLMNDTSNALLGPVQIRDLAGRLGVRPTKTLGQNFVHDAGTVRKIVRSAGIEAGQHVVEV 60

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           G G G+LT  LL  G   V+ +E D     Q    + D + +  +RL ++  DAL V   
Sbjct: 61  GPGLGSLTFGLLEAGV-TVVAVEIDPVLAAQLPLTVADRAPEWSDRLTVVLQDALTV--- 116

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKN 167
                 +P  ++ANLPYN+   +L  ++        ++SL    ++ Q EV +R+ A   
Sbjct: 117 TELPGPAPTALVANLPYNVAVPVLLTFLE------RFDSLDRVLVMVQAEVADRLAAPPG 170

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKIT 226
           +  YG  SV   W   A     I  +VF+P P V S ++      +P+     E + ++ 
Sbjct: 171 NRTYGIPSVKAAWYASARRTSTIGRNVFWPVPNVDSALVLLERRDHPVTRATRERVFEVV 230

Query: 227 QEAFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             AF +RRK LR      +      +  L  AG++   R E L+++DF RI   L D 
Sbjct: 231 DAAFAQRRKMLRGALAELAGSAAAAQQALEAAGVDPTTRGEQLTVDDFARIAEALDDQ 288


>gi|159030325|emb|CAO91220.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 268

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 132/259 (50%), Gaps = 12/259 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI P+K  GQ++L D +IL +I  ++       V+EIG G G LT+ LL  GA+ V+ +E
Sbjct: 2   KIQPRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLD-GAQLVVAVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+  + IL     Q  N   +I  D L +  E+   ++   +++AN+PYNI   +L   
Sbjct: 61  IDRDLWTILNKKFGQQDN-FHLIPGDFLTLKPEQLPPVN---KVVANIPYNITGPILEKL 116

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +   P  P ++S+TLL QKEV ER+ A  ++  Y  LSV   +      + D+    F
Sbjct: 117 LGSIAHPFTPPYQSITLLLQKEVAERLVAVPSTKAYSALSVRIQYLADCQWICDVPRRAF 176

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-- 252
            P P+V S VI  +P + P      + L  +    F  RRK LR +LK     + L Q  
Sbjct: 177 SPPPRVDSAVIQILPRVFPKNVGNAAFLSTLISWGFANRRKMLRNNLKNCLDSDRLSQIL 236

Query: 253 AGIETN--LRAENLSIEDF 269
             +E N   RAE+LS+  +
Sbjct: 237 TQLEINPLARAEDLSLSQW 255


>gi|84497817|ref|ZP_00996614.1| dimethyladenosine transferase [Janibacter sp. HTCC2649]
 gi|84381317|gb|EAP97200.1| dimethyladenosine transferase [Janibacter sp. HTCC2649]
          Length = 295

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 130/277 (46%), Gaps = 15/277 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ + + + I P K  GQNF++D N +++I   +G      V+EIG G G+LT  LL
Sbjct: 9   AAQIRELAARFGIRPTKSWGQNFVIDANTVQRIVRVAGVGPDDVVVEIGPGLGSLTLALL 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIA 123
            +     +V         + + + +  P    RL ++  DAL+++        +P  ++A
Sbjct: 69  PVVRHVTVVEVDPILAGALPETVETVAPGVVERLTVVHADALRIEE---LPGDAPTALVA 125

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYNI   ++ N++         E + ++ Q EV ER+ A+  S  YG  SV   W  +
Sbjct: 126 NLPYNISVPVVLNFLERFA---SLERILVMVQLEVAERLAAKPGSKIYGVPSVKAAWYAE 182

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLK 242
            T+  ++S  VF+P P V S ++  +    P      E +      AF +RRKTLR +L 
Sbjct: 183 VTLAGNVSRSVFWPVPNVDSGLVKLVRREQPTTDASREQVFACIDAAFAQRRKTLRAALA 242

Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274
              G        L  AGI+   R E L +  F  I +
Sbjct: 243 TWAGSPSAAEAALVAAGIDPRTRGEQLDVHQFAAIAS 279


>gi|298675523|ref|YP_003727273.1| dimethyladenosine transferase [Methanohalobium evestigatum Z-7303]
 gi|298288511|gb|ADI74477.1| dimethyladenosine transferase [Methanohalobium evestigatum Z-7303]
          Length = 269

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 142/280 (50%), Gaps = 31/280 (11%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           + ++L  Y +I   +  Q+FL+D N L +I +S+   +  TV+EIGAG GNLT+ +    
Sbjct: 2   IDSLLDEYGVIGGDH-DQHFLVDDNFLNQIVDSAELTENDTVLEIGAGIGNLTEKIAE-T 59

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             K+  +E D     IL +  + + N +EII+ D L ++  +F       +++ANLPY+I
Sbjct: 60  VHKLYAVELDPNLCDILIERFADYDN-VEIIEGDILDIELPEFN------KVVANLPYSI 112

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F  +  +     +E   L++Q E   R+ + KNS  Y RL+V T +   A+++  
Sbjct: 113 SSHITFKLLKHE-----FELGILMYQYEFARRMVSPKNSKDYSRLTVTTNFFADASIIMK 167

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK-----ITQEAFGKRRKTLRQSL--- 241
           +    F P+P+V S V+  IP     P   + + +          FG+RRK LR ++   
Sbjct: 168 VPRSAFKPAPEVKSAVVKLIPR----PASFDVVDEDFFLTFVTAVFGQRRKKLRNAILNT 223

Query: 242 -KRLGGEN---LLHQAGIE-TNLRAENLSIEDFCRITNIL 276
             +LG  N   ++++   E  N RAENL   +   I N L
Sbjct: 224 NSKLGIANVKEVVNKLPDEYMNKRAENLEPSELAYIANQL 263


>gi|322435995|ref|YP_004218207.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX9]
 gi|321163722|gb|ADW69427.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX9]
          Length = 271

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 127/262 (48%), Gaps = 10/262 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           I K  +GQNFL+D +   +IA S G L   T++EIG G G +T++L T   R++I +E D
Sbjct: 4   IRKPKLGQNFLVDDDARHRIAGSLGDLSTRTIVEIGPGHGAITEILATR-CRRLIALELD 62

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +     L     ++PN +++I+ D LK DF         + +I NLPY I + +L +  +
Sbjct: 63  RSLAAELTFRFRENPN-VQVIETDVLKFDFASIAEEGETLDVIGNLPYYITSDILLHLFA 121

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A           L+ Q+EV +R++A      YG LS  T    +   +F + P  F P P
Sbjct: 122 AAPL---LRRAALMMQREVADRVSAHPGVRDYGLLSASTQMYAQVDNLFTLPPAAFNPPP 178

Query: 200 KVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQ--AG 254
            V STV+   F P    +        +  ++ F ++RKTL  +L+  G     L Q  A 
Sbjct: 179 DVFSTVLRLSFAPRFTELGVDPIGFDRFLRKCFAQKRKTLHNNLRVAGYSPEALAQWPAT 238

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           I    RAE LS+E    +   L
Sbjct: 239 IPPQARAEQLSLEQMSTLYGAL 260


>gi|166363194|ref|YP_001655467.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843]
 gi|166085567|dbj|BAG00275.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843]
          Length = 268

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 132/259 (50%), Gaps = 12/259 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI P+K  GQ++L D +IL +I  ++       V+EIG G G LT+ LL  GA+ V+ +E
Sbjct: 2   KIQPRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLD-GAQLVVAVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+  + IL     Q  N   +I  D L +  E+   ++   +++AN+PYNI   +L   
Sbjct: 61  IDRDLWTILNKKFGQQDN-FHLIPGDFLSLKPEQLPPVN---KVVANIPYNITGPILEKL 116

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +   P  P ++S+TLL QKEV ER+ A  ++  Y  LSV   +      + D+    F
Sbjct: 117 LGSIAHPFTPPYQSITLLVQKEVAERLVAVPSTKAYSALSVRIQYLADCQWICDVPWRAF 176

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-- 252
            P P+V S VI  +P + P      + L  +    F  RRK LR +LK     + L Q  
Sbjct: 177 SPPPRVDSAVIQLLPRVLPNNVSNAAFLSTLISWGFANRRKMLRNNLKNCLDSDRLSQIL 236

Query: 253 AGIETN--LRAENLSIEDF 269
             +E N   RAE+LS+  +
Sbjct: 237 TQLEINPLARAEDLSLSQW 255


>gi|107023643|ref|YP_621970.1| dimethyladenosine transferase [Burkholderia cenocepacia AU 1054]
 gi|116690728|ref|YP_836351.1| dimethyladenosine transferase [Burkholderia cenocepacia HI2424]
 gi|170734070|ref|YP_001766017.1| dimethyladenosine transferase [Burkholderia cenocepacia MC0-3]
 gi|122064286|sp|Q1BTQ8|RSMA_BURCA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221651|sp|A0KAD1|RSMA_BURCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729762|sp|B1JY71|RSMA_BURCC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|105893832|gb|ABF76997.1| dimethyladenosine transferase [Burkholderia cenocepacia AU 1054]
 gi|116648817|gb|ABK09458.1| dimethyladenosine transferase [Burkholderia cenocepacia HI2424]
 gi|169817312|gb|ACA91895.1| dimethyladenosine transferase [Burkholderia cenocepacia MC0-3]
          Length = 275

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 133/280 (47%), Gaps = 35/280 (12%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT  L   L      
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTGPLIERLATPESP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+    ++  +  +    LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 67  LHAVELDRD---LIGRLQQRFGALLELHAGDALAFDFR---SLAAPGDKPSLRIVGNLPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           NI + LLF+ ++      F +++     + Q EV ER+ A+  +  + RLSV+  +R   
Sbjct: 121 NISSPLLFHLMT------FADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVM 174

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTL 237
             M D+ P  F P PKV S ++  IP+       ++P+      L +I   AF +RRK L
Sbjct: 175 EKMLDVPPESFQPPPKVDSAIVRMIPYEPHELPDVDPV-----LLGEIVTAAFSQRRKML 229

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           R +L            G +   RAE++S+ ++  +   L 
Sbjct: 230 RNTLGDYRETIDFDALGFDLARRAEDVSVAEYVGVAQALA 269


>gi|253582223|ref|ZP_04859446.1| dimethyladenosine transferase [Fusobacterium varium ATCC 27725]
 gi|251835762|gb|EES64300.1| dimethyladenosine transferase [Fusobacterium varium ATCC 27725]
          Length = 264

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 134/264 (50%), Gaps = 17/264 (6%)

Query: 22  KKYMGQNFLLDL-NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL D   +L+KI E S   +  T++EIG G G LT +LL   A+KV+ +E D+
Sbjct: 6   KKKFGQNFLTDQKEVLRKIMEVSDVNENDTILEIGPGEGALTALLLD-KAQKVVAVEIDR 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               IL+   + +P +  ++ +D L+ D +++  +   I+++AN+PY I + ++   I  
Sbjct: 65  DLEKILRKKFNDNP-KYTLVMNDVLETDLKEYLTLG--IKVVANIPYYITSPIINKLIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  + + ++ QKEV ERI A+K       L++   +  KA  +F I    F P PK
Sbjct: 122 ---REIIDEIYIMVQKEVAERICARKGKER-SVLTLAVEYFGKAEYLFTIPKEAFTPIPK 177

Query: 201 VTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQ 252
           V S  +    + +     +   +   K  + AF  +RK L  +   LG        +L +
Sbjct: 178 VDSAFMSIKLYKDDKYKKIIEEDIFFKYVKAAFANKRKNLLNNFTALGISKDELRKILSE 237

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
           AGI+   RAENL+IEDF  +  + 
Sbjct: 238 AGIKETERAENLTIEDFINLIAVF 261


>gi|160903048|ref|YP_001568629.1| dimethyladenosine transferase [Petrotoga mobilis SJ95]
 gi|160360692|gb|ABX32306.1| dimethyladenosine transferase [Petrotoga mobilis SJ95]
          Length = 275

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 136/270 (50%), Gaps = 18/270 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  Y I  KK +GQNFL +  +  +I + S   +   +IEIG G G LT+ +    A+KV
Sbjct: 7   LKKYDIRLKKGLGQNFLSNSTVSHEIVKKSEIDENDVIIEIGTGNGILTEEIAK-KAKKV 65

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           I  E D++  P+L++      N +EI  +D L  D  KF +I   ++ IAN+PY I +++
Sbjct: 66  ITFEIDERLKPLLEERFEGSKN-VEIHFEDFLNTDLSKFKDIPK-LKYIANIPYYISSKI 123

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L          P +E    +FQKE G+R+ A K+   Y  LS+          + D+S +
Sbjct: 124 LEKIFEES---PKFEYAIFMFQKEFGQRLMA-KSKKSYSPLSIFVQTYCTVERIMDVSKN 179

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLK-----KITQEAFGKRRKTLRQSLKRL--GG 246
            F P PKV S ++ F    NP+   +E +      K     F KRRKT++ +LK +    
Sbjct: 180 NFIPIPKVDSVILKF----NPVYKYVEEIDPKDFMKFVHICFSKRRKTIKNNLKEIIPDT 235

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E  L +  I+ + R E++ +E + ++   L
Sbjct: 236 EKYLTEVQIDPSSRPEDIPLETYIQLYKKL 265


>gi|255082199|ref|XP_002508318.1| hypothetical protein MICPUN_84159 [Micromonas sp. RCC299]
 gi|226523594|gb|ACO69576.1| hypothetical protein MICPUN_84159 [Micromonas sp. RCC299]
          Length = 326

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/241 (34%), Positives = 119/241 (49%), Gaps = 19/241 (7%)

Query: 6   KSHSL------KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           K HSL      K   +H  I   K  GQ+ L +  I+  I E  G      V+EIG G G
Sbjct: 21  KKHSLASSAGQKKNATHGGIQFLKSYGQHILKNPMIVNSIVEKGGVKSTDVVLEIGPGTG 80

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISS 117
           NLT  LL   A+KVI IE D +    L+     + H   L II  D LKVD   +F++  
Sbjct: 81  NLTMRLLET-AKKVIAIEFDPRMVLELQRRVQGTPHQQNLTIISGDFLKVDLP-YFDVC- 137

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
               +AN+PY I + L+F  +S     P + + TL+FQ+E   R+  Q   P Y RLSV 
Sbjct: 138 ----VANVPYQISSPLVFKLLSHR---PMFRAATLMFQREFAMRLCVQPGDPLYCRLSVN 190

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKT 236
           T    + T +  +  + F P PKV S+V+   P  ++ IPC  +    + +  FG++ KT
Sbjct: 191 TQLLARTTHLLKVGKNNFRPPPKVDSSVVRIEPRPISTIPCNFKEWDGLVRLCFGRKNKT 250

Query: 237 L 237
           L
Sbjct: 251 L 251


>gi|147669028|ref|YP_001213846.1| dimethyladenosine transferase [Dehalococcoides sp. BAV1]
 gi|189028805|sp|A5FS52|RSMA_DEHSB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146269976|gb|ABQ16968.1| dimethyladenosine transferase [Dehalococcoides sp. BAV1]
          Length = 291

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 139/270 (51%), Gaps = 15/270 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y +  +K +GQ+FL+   +L KI  ++      TVIE+G G G LT+ LL   A
Sbjct: 20  KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGVLTEELLKR-A 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +VI +E D +    L +    +PN   +I  D LK   E+    + P +++ANLPY I 
Sbjct: 79  GQVIAVEVDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQNVPYKLVANLPYYIT 137

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +L  ++ A   P   ES+ ++ QKEV + I A+      G L++   +    +++  +
Sbjct: 138 SAVLRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTG--DMGLLTLSIRFYGNPSLVSVV 192

Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246
               F+P P+V S ++   IP    +    E    K+ +  FG RRKTL  +L +  G  
Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRI 272
                +LL+ AGI+   RAE LS+E++ ++
Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKL 282


>gi|320107650|ref|YP_004183240.1| dimethyladenosine transferase [Terriglobus saanensis SP1PR4]
 gi|319926171|gb|ADV83246.1| dimethyladenosine transferase [Terriglobus saanensis SP1PR4]
          Length = 264

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K  +GQNFL+D     +IA++ G +   TV+EIG G G++T +L    A+K+I IE D+ 
Sbjct: 6   KPKLGQNFLVDDGARHRIADALGDVSQRTVLEIGPGHGSITSILAE-RAKKLICIELDRS 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P L+     HPN +EII+ D L  DF           ++ NLPY I + +L +  +  
Sbjct: 65  LAPELRFKFRNHPN-VEIIEADVLHADFAALLGEDETADLVGNLPYYITSDILLHLYAQS 123

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                     ++ Q+EV +RI+A   +  +G LS  +        +F + P  F P P V
Sbjct: 124 ER---LRMAVVMMQREVADRISASPGTRDFGLLSATSQMYADVENLFTLPPEAFSPPPDV 180

Query: 202 TSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG------ENLLHQA 253
            S+V+   F P    +    +      +  F ++RKTL  +L R GG           Q 
Sbjct: 181 HSSVLRLTFAPRFAELHVEAKPFDAFLKMCFQQKRKTLSNNL-RAGGVSPERIAAACAQT 239

Query: 254 GIETNLRAENLSIE 267
            +   +RAE +++E
Sbjct: 240 DVSPTVRAEAMTLE 253


>gi|296169879|ref|ZP_06851491.1| dimethyladenosine transferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895435|gb|EFG75137.1| dimethyladenosine transferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 317

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 134/276 (48%), Gaps = 19/276 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQNF+ D N +++I  ++G      V+E+G G G+LT  LL  GA  V  +E D 
Sbjct: 33  PRKSLGQNFVHDANTVRRIVSTAGVGRSDHVLEVGPGLGSLTLALLDRGA-AVTAVEIDP 91

Query: 81  QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                L    ++H     +RL ++  D L +  ++    + P  ++ANLPYN+    L +
Sbjct: 92  VLAERLPLTVAEHSHSEIHRLTVLNRDVLTLGPDEL--AAEPNAVVANLPYNVAVPALLH 149

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            + AD   P  +++T++ Q EV ER+ A+     YG  SV   +         +SP VF+
Sbjct: 150 LL-ADF--PSIQTVTVMVQAEVAERLAAEPGGKDYGVPSVKVRFFGTVRRCGTVSPAVFW 206

Query: 197 PSPKVTSTVIHFIPH-LNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGGE----- 247
           P P+V S ++    +   P P        + ++   AF +RRKT R +     G      
Sbjct: 207 PIPRVYSGLVRIDRYPTAPWPTDEAFRRQVFRLVDIAFAQRRKTARNAFVDWAGSGNESA 266

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           N L  A I+   R E LS++DF R+    T+  D A
Sbjct: 267 NRLLAASIDPARRGETLSVDDFVRLLRRSTEPADTA 302


>gi|295675488|ref|YP_003604012.1| dimethyladenosine transferase [Burkholderia sp. CCGE1002]
 gi|295435331|gb|ADG14501.1| dimethyladenosine transferase [Burkholderia sp. CCGE1002]
          Length = 280

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 131/267 (49%), Gaps = 19/267 (7%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H   + +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L   L      
Sbjct: 10  HQGHLARKRFGQNFLVDMGVIDSIVDVIRPKRGERMVEIGPGLGALTEPLIERLATPESP 69

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+     LK   ++    LE+   DAL+ DF    ++++P     +RI+ NLPY
Sbjct: 70  LHAVELDRDLIGRLK---TKFGELLELHSGDALEFDFG---SLAAPGDKASLRIVGNLPY 123

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI + LLF+     T+         + Q EV ER+ A+  +  + RLSV+  +R      
Sbjct: 124 NISSPLLFHLA---TFADRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQ 180

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P PKV S ++  IP+  + +P   E+ L ++   AF +RRK LR +L  L 
Sbjct: 181 LDVPPESFQPPPKVDSAIVRMIPYERHELPMVDENVLGEVVTAAFSQRRKMLRNTLAALR 240

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRI 272
                   G +   RAE++ + ++  +
Sbjct: 241 DTVDFDALGFDLQRRAEDVPVAEYVSV 267


>gi|302552007|ref|ZP_07304349.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM
           40736]
 gi|302469625|gb|EFL32718.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM
           40736]
          Length = 295

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 134/276 (48%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++        +E+G G G+LT  LL + 
Sbjct: 15  IRDLATTLGVRPTKQRGQNFVIDANTVRRIVRTAQVRPDDVAVEVGPGLGSLTLALLEV- 73

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPNRLE---IIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V  +E D      L   I+++ P+R +   ++  DA+ V         +P  ++ANL
Sbjct: 74  ADRVTAVEIDDVLAAALPATITARMPDRADRFALVHCDAMHV---TELPGPAPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  DT+P    +L ++ Q EV +R+ A   S  YG  SV   W  +  
Sbjct: 131 PYNVAVPVLLHML--DTFPTIERTL-VMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238
               I  +VF+P+P V S ++  +    P+       +   +   AF +RRKTLR     
Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTTASKAEVFAVVDAAFAQRRKTLRAALAG 247

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +      E  L  AG+    R E+L++E+F RI  
Sbjct: 248 WAGSAAAAETALVAAGVSPQARGESLTVEEFARIAE 283


>gi|218249123|ref|YP_002374494.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801]
 gi|226729777|sp|B7JWJ7|RSMA_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218169601|gb|ACK68338.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801]
          Length = 272

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 132/267 (49%), Gaps = 13/267 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L +I E++       V+EIG G G LT+ LL L  + ++ +E D+
Sbjct: 4   PRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPL-VQSIVAVELDR 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFN 136
                L   S  + N   +++ D L +D     E+F       +++AN+PYNI + +L  
Sbjct: 63  DLCYRLAK-SFGNFNHFLLLEGDILSLDLTTQLEQFPQFQPINKVVANIPYNITSPILEK 121

Query: 137 WISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            + +   P  P +E + LL QKEV +RI A   S  YG LSV T +  +   + ++    
Sbjct: 122 LLGSIAHPQHPSYELIVLLMQKEVAQRIVASPQSKAYGALSVRTQYLAQCDYICEVPSKA 181

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249
           F P PKV S VI   P     P    + L ++ +  F  RRK L  +LK +  ++    L
Sbjct: 182 FDPPPKVDSAVIRLTPRSLETPAINPQKLDQLVKLGFANRRKMLHNNLKSIIDKDHLTLL 241

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L Q  I   +RAE LS+E +   +N+L
Sbjct: 242 LDQLQINPQVRAEELSLEQWIMFSNLL 268


>gi|283782577|ref|YP_003373331.1| dimethyladenosine transferase [Gardnerella vaginalis 409-05]
 gi|283441107|gb|ADB13573.1| dimethyladenosine transferase [Gardnerella vaginalis 409-05]
          Length = 302

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 135/285 (47%), Gaps = 22/285 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   ++KI  ++    G  V+E+G G G+LT  +L
Sbjct: 24  AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAEVKSGDIVMEVGPGLGSLTLAIL 83

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IR 120
             GA ++  +E D    ++    +++   Q   +  +I  DAL V+ +    I+      
Sbjct: 84  QTGA-QLTAVEIDPPLARRLPHTVEEFMPQSMQKFNVILKDALTVNADDVPQIAQAKQFT 142

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T ++   +   +     ++  ++ QKEV +R+ AQ  +  YG  SV   W
Sbjct: 143 LVANLPYNVATPIILTLLEKFSN---LQNFLVMVQKEVADRLCAQPGNKVYGTPSVKLAW 199

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-------LESLKKITQEAFGKR 233
             KA     I  +VF+PSP V S ++ F  +     C         E +      AF +R
Sbjct: 200 YGKAQRAGLIGRNVFWPSPNVDSALVSFTRN-----CTGKGDNNEREGVFAFIDAAFQQR 254

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           RKTL  +LK    E     +GI+   R E L+ ++F  +     D
Sbjct: 255 RKTLHAALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKD 299


>gi|68066927|ref|XP_675435.1| dimethyladenosine transferase [Plasmodium berghei strain ANKA]
 gi|56494621|emb|CAH94666.1| dimethyladenosine transferase, putative [Plasmodium berghei]
          Length = 362

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 149/325 (45%), Gaps = 61/325 (18%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE----------------------- 41
           +   +LKT+L   +  PK+ +GQN+L D NI+KK+ +                       
Sbjct: 22  DDEQNLKTLLPSREFKPKRSLGQNYLKDENIIKKMIQAIELDSSQFVLMKEKKKKKNLLK 81

Query: 42  ----------------------------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
                                        S   +G  +IE+G G G L++ L     + +
Sbjct: 82  SKKDKIQDETDEKNKLKINENNCNSKNMESLKNEGKGIIELGCGLGQLSKHLFK-KYKNM 140

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTR 132
             IE D +   I   IS   P   + I DD L++++++   N ++ + +I NLP+ I ++
Sbjct: 141 TAIEIDSRALTI---ISRTMPG-FDFIHDDVLQINYKELSINKNTKLSVIGNLPFYITSQ 196

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +LF  +    +  + E   +  Q EVG+RI A++N   Y  LS+L    T   ++F I  
Sbjct: 197 ILFCLLD---FYKYIEQAVVTIQYEVGQRIVAKQNDKDYSILSILFSLYTHPYLLFKIPS 253

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGENLLH 251
           + F+P PKV + V+  I   +   C L  LK++ + AF +RRK L+ SLK  L   N+ +
Sbjct: 254 NAFYPIPKVEAAVMKIIFKKHNFNCNLLFLKQVLKHAFQQRRKKLKSSLKGLLNMYNIQN 313

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
                ++LR + L  E F  +TNIL
Sbjct: 314 LPMAFSDLRPQQLYPEQFVELTNIL 338


>gi|88604257|ref|YP_504435.1| dimethyladenosine transferase [Methanospirillum hungatei JF-1]
 gi|119365031|sp|Q2FSA9|RSMA_METHJ RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|88189719|gb|ABD42716.1| dimethyladenosine transferase [Methanospirillum hungatei JF-1]
          Length = 256

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 134/267 (50%), Gaps = 24/267 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           + Y  Q+FL D  I+ +IA+    + G  V+EIG G G LT+ LL  GAR VI +E D+ 
Sbjct: 2   RAYRDQHFLTDPRIVARIADIL-DISGRIVLEIGPGEGILTEALLERGAR-VISVELDRT 59

Query: 82  FFPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L  +  S      L ++Q DA+KV    F  +      +ANLPY+I + + F  + 
Sbjct: 60  LIERLSRRFASEIADGSLTLLQGDAVKVPLPPFEIV------MANLPYSISSPITFRLLD 113

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  +E+  L++QKE  +R+ A   +   GRLS++     +A   FD+ P  F P P
Sbjct: 114 IG-----FEAAILMYQKEFADRMMAHPGTRDCGRLSIMLQTYARANRCFDLPPGAFSPPP 168

Query: 200 KVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGG-------ENLLH 251
            V STV+   P     P     + + + +E F +RRKT++ +LK L G       ++++ 
Sbjct: 169 AVRSTVMWIEPREPLFPIHDRKIYEDLVRELFTRRRKTVQSTLKALAGMFGKEKIDSVVR 228

Query: 252 QAGIET-NLRAENLSIEDFCRITNILT 277
               E  + R E L +EDF  I+N L+
Sbjct: 229 DLNPEILSSRPEALYLEDFATISNQLS 255


>gi|227494872|ref|ZP_03925188.1| possible dimethyladenosine transferase [Actinomyces coleocanis DSM
           15436]
 gi|226831324|gb|EEH63707.1| possible dimethyladenosine transferase [Actinomyces coleocanis DSM
           15436]
          Length = 310

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 141/296 (47%), Gaps = 30/296 (10%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I +   I P K +GQNF+ D   ++KI  +     G  V+EIG G G+LT  LL  
Sbjct: 14  NVREICAALNIQPTKTLGQNFVHDGGTVRKIIAAGRVTAGEHVLEIGPGLGSLTLGLLEA 73

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKVDFEKFFNIS--------- 116
           G R V  +E D      L    +   +    L ++  D L+V  +   N +         
Sbjct: 74  GCR-VTAVEIDPVLATALPSTVAGQGSADLPLRVLLKDGLQVRSDAELNEAPLINGEIVE 132

Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
             +P R++ANLPYN+   L+ N++  + +P   E L ++ Q EV +R++A      YG  
Sbjct: 133 WEAPTRLVANLPYNVAVPLVLNFL--EHFPSIQEIL-VMVQTEVAQRLSATPGGRIYGVP 189

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-------PHLNPIPCCLESLKKITQ 227
           SV   W   A M   IS  +F+P P V S+++          P L       E++ K+  
Sbjct: 190 SVKAAWYGHAEMAGTISRQIFWPVPNVDSSLVRITRYAAGEGPELGEPAVSKEAVFKLVD 249

Query: 228 EAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            AF +RRKTLR +LK   G     E LL +AGI++  R E L I +F  +    T+
Sbjct: 250 AAFAQRRKTLRAALKNWAGNATLAEELLAKAGIDSVRRGETLDINEFVALGRAATE 305


>gi|73670681|ref|YP_306696.1| dimethyladenosine transferase [Methanosarcina barkeri str. Fusaro]
 gi|118600876|sp|Q466S6|RSMA_METBF RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|72397843|gb|AAZ72116.1| dimethyladenosine transferase [Methanosarcina barkeri str. Fusaro]
          Length = 287

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 139/282 (49%), Gaps = 31/282 (10%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++++L  Y I    +  Q+FL+D   L +I  ++       V+EIGAG GNLT+ L    
Sbjct: 12  VRSLLKKYNIKGGTF-DQHFLVDAGYLDRIVAAAELGPKDVVLEIGAGVGNLTERLAK-K 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            +KVI IE D     +L D   +  N +EII  DALKV+F +F       +I++NLPY+I
Sbjct: 70  VKKVIAIELDPVLVRVLHDRFDKVGN-IEIIAGDALKVEFPEF------DKIVSNLPYSI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F  +        ++   L++Q E   R+ +Q N   Y RL+V T +   A+++  
Sbjct: 123 SSEITFKLLRHK-----FKLGILMYQYEFAARMVSQPNCKDYSRLTVDTCYFADASILMK 177

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGG 246
           +    F P+P+V S VI  +P   P+P  ++            F +RRK LR ++  L  
Sbjct: 178 VPKSAFQPAPEVDSAVIKLVPR--PVPFEVKDQAFFMNFVSAVFSQRRKKLRNAI--LNT 233

Query: 247 ENLLHQAGIETNL----------RAENLSIEDFCRITNILTD 278
             LL    I+  +          RAENL+ E+  ++ N + D
Sbjct: 234 NYLLKIPNIKEVISRLPEDMMSKRAENLTPEELAQVANHIID 275


>gi|298253263|ref|ZP_06977055.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis 5-1]
 gi|297532658|gb|EFH71544.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis 5-1]
          Length = 298

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 135/285 (47%), Gaps = 22/285 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   ++KI  ++    G  V+E+G G G+LT  +L
Sbjct: 20  AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAEVKSGDIVMEVGPGLGSLTLAIL 79

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IR 120
             GA ++  +E D    ++    +++   Q   +  +I  DAL V+ +    I+      
Sbjct: 80  QTGA-QLTAVEIDPPLARRLPHTVEEFMPQSMQKFNVILKDALTVNADDVPQIAQAKQFT 138

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T ++   +   +     ++  ++ QKEV +R+ AQ  +  YG  SV   W
Sbjct: 139 LVANLPYNVATPIILTLLEKFSN---LQNFLVMVQKEVADRLCAQPGNKVYGTPSVKLAW 195

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-------LESLKKITQEAFGKR 233
             KA     I  +VF+PSP V S ++ F  +     C         E +      AF +R
Sbjct: 196 YGKAQRAGLIGRNVFWPSPNVDSALVSFTRN-----CTGKGDNNEREGVFAFIDAAFQQR 250

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           RKTL  +LK    E     +GI+   R E L+ ++F  +     D
Sbjct: 251 RKTLHAALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKD 295


>gi|300781662|ref|ZP_07091516.1| dimethyladenosine transferase [Corynebacterium genitalium ATCC
           33030]
 gi|300533369|gb|EFK54430.1| dimethyladenosine transferase [Corynebacterium genitalium ATCC
           33030]
          Length = 302

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 139/282 (49%), Gaps = 28/282 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD-GIT--VIEIGAGPGNLTQMLL 66
           ++ +    ++ P K +GQNF+ D N +++I  ++   + GI   V+E+G G G+LT  L+
Sbjct: 31  IRALAEELEVSPTKKLGQNFVHDPNTVRRIVAAADLEEPGIAEMVLEVGPGLGSLTLGLI 90

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            + A  V+ +E D +    L + +++    ++L ++  DAL V +        P  ++AN
Sbjct: 91  DV-ANHVVAVEIDPRLAAKLPETAAERSDADKLTVLNMDALMVSYADLDR--EPTALVAN 147

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +  + +P     L ++ Q EV +R+ A   S  YG  SV   +    
Sbjct: 148 LPYNVAVPVLLHLL--EEFPSIRRVLVMV-QLEVADRLAAAPGSKIYGVPSVKASFYGDV 204

Query: 185 TMMFDISPHVFFPSPKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
                I  +VF+P+P + S ++       F   L P       +  +   AF +RRKTLR
Sbjct: 205 RKAGTIGKNVFWPAPNIESGLVRIDVNETFDRSLRP------KVFPLIDAAFAQRRKTLR 258

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
             L  + G     E  L  AGI+  LR E LS+EDF R+  +
Sbjct: 259 ACLTGVYGSGPAAEEALRAAGIDPGLRGEKLSVEDFVRLAEV 300


>gi|327335119|gb|EGE76830.1| dimethyladenosine transferase [Propionibacterium acnes HL097PA1]
          Length = 298

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 26/286 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLL 66
           S++ I     + P K  GQNF+ D N +++I   +  G+ D   VIE+G G G+LT  LL
Sbjct: 11  SIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAAD--RVIEVGPGLGSLTLGLL 68

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRII 122
             GA +V+ IE D+     L   ++ + P    RLE++  DAL V   K    + P  ++
Sbjct: 69  ETGA-EVVAIEIDEVLANQLPGTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTALV 124

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + ++     P W +  ++ Q EV +R+ A   S  YG  S    W  
Sbjct: 125 ANLPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWYA 181

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI----PHLNPI-PCCLES-LKKITQEAFGKRRKT 236
           +A  + ++ P VF+P P V S ++       PH++   P    S + ++   AF  RRK 
Sbjct: 182 EAIRVGNVPPTVFWPVPNVDSGLVRITRRRPPHVDGRDPRVTRSQVFRVVDAAFASRRKM 241

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LR +L  L G       L+  AGI+   R E L I D  R+   L 
Sbjct: 242 LRSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVAEALA 287


>gi|296118236|ref|ZP_06836817.1| dimethyladenosine transferase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968794|gb|EFG82038.1| dimethyladenosine transferase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 280

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 141/279 (50%), Gaps = 18/279 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K  GQNFL D N +++I  ++   D   V+E+G G G+LT  LL   
Sbjct: 10  IRNLAEKLDVSPTKKWGQNFLHDPNTIRRIVAAADLTDDDHVVEVGPGLGSLTLGLLDEA 69

Query: 70  ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D +    L       + +H ++L ++  DAL++D E+   + +P  ++ANL
Sbjct: 70  AH-VTAVEIDPRLAGELPATVQWRAPEHVDKLTLLHKDALRIDGEE---LGTPTALVANL 125

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  + +P   + + ++ Q EV +R+ A   S  YG  SV   +     
Sbjct: 126 PYNVAVPVLLHIL--ELYPSL-QRVLVMVQLEVADRLAADPGSKIYGVPSVKASFYGNVR 182

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
              +I  HVF+P+P + S ++     L P     + L  +   AF +RRKTLR +L    
Sbjct: 183 KAGNIGKHVFWPAPNIESGLVRI--DLYPPRERPKKLWPLIDAAFAQRRKTLRAALSGFY 240

Query: 246 G-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           G     E  L +AGIE  LR E +SI+DF R+  +   N
Sbjct: 241 GSGAAAEQALREAGIEPTLRGEKISIDDFLRLAAVGESN 279


>gi|113953175|ref|YP_730799.1| dimethyladenosine transferase [Synechococcus sp. CC9311]
 gi|123031699|sp|Q0I9S3|RSMA_SYNS3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|113880526|gb|ABI45484.1| dimethyladenosine transferase [Synechococcus sp. CC9311]
          Length = 277

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 11/271 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L++  +L +I E++   DG  V+E+G G G LT+ LL   A  +  +E D+ 
Sbjct: 9   RKRFGQHWLINERVLDRIVEAAELQDGDRVLEVGPGRGALTERLLASAAAAIHAVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   + HP +  + + D L V  E    + +  +++AN+PYNI   LL   I   
Sbjct: 69  LVAGLQQTFASHP-KFSLQEGDVLSVPLELSGGVPA-NKVVANIPYNITGPLLDRLIGRL 126

Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             P    ++ L LL Q EV +RI A+    ++  LSV      + + +  + P  F P P
Sbjct: 127 DRPVDFSYQRLVLLVQHEVAQRIRARPGHSNFSALSVRMQLLGRCSHVCPVPPRCFQPPP 186

Query: 200 KVTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH----Q 252
           KV S VI    F P   P       ++++ + AF  RRK LR +L  +G  +LL     +
Sbjct: 187 KVQSEVICIDPFPPERRPTAALSRGVERLLKMAFLSRRKMLRNTLAPVGSTDLLQSLAEE 246

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           AGI    R ++++ E +  +   L     +A
Sbjct: 247 AGISLQQRPQDVAPEAWVALAKGLNQVDSVA 277


>gi|298246521|ref|ZP_06970327.1| dimethyladenosine transferase [Ktedonobacter racemifer DSM 44963]
 gi|297554002|gb|EFH87867.1| dimethyladenosine transferase [Ktedonobacter racemifer DSM 44963]
          Length = 294

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 145/281 (51%), Gaps = 34/281 (12%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L+ +L  + + P K  GQNFL+D ++L++I E++       V+E+G+G G LT+ L   
Sbjct: 18  DLRNLLYAHGMRPNKAFGQNFLIDRSVLQQIVEAAEINANEEVLEVGSGTGVLTRELAQ- 76

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            AR+V+ +E ++    +L+      PN +E+++ + L ++ +  F    P +++ANLPY 
Sbjct: 77  EARRVVAVELERDMLTLLEKTVGDRPN-VELVERNLLFINPQDHFE-HRPYKLVANLPY- 133

Query: 129 IGTRLLFNWISADTWPPFWES------LTLLFQKEVGERITAQKNSPHYGRLSVL---TG 179
                   +I+A T+  F ES      L ++ Q EV +RI A   +P  G LSVL     
Sbjct: 134 --------YITAPTFRHFLESQNPPRLLVVMVQLEVAQRIVA---AP--GDLSVLGVSIQ 180

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTL 237
           +  K  ++  +    F+P+PKV S ++    +   +    E  +  ++ Q  F ++RK L
Sbjct: 181 FYGKPRIVSKVPAQAFYPAPKVDSAILRIDVNDETLLTLEERDRFFRVVQAGFAEKRKQL 240

Query: 238 RQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRI 272
             SL      K       L QAGIE N RAE LSIE++ ++
Sbjct: 241 HNSLTHALHYKNEVVRACLSQAGIEANRRAEMLSIEEWMQL 281


>gi|224004354|ref|XP_002295828.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585860|gb|ACI64545.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 275

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 134/273 (49%), Gaps = 27/273 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDG--ITVIEIGAGPGNLTQMLL-TLGARKVIVIE 77
           PK+ +GQN+L D N + KI  +  +     +  +E+G G G LT +L+ ++G   +  IE
Sbjct: 11  PKQSLGQNYLRDGNTVAKICRAFATQQKTQLRAVELGPGAGALTDVLVNSIGKPNLQCIE 70

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFN 136
            DQ+   +L   S +HP  L I   D L+ D+ +   +   P+ II NLPY I +++LF 
Sbjct: 71  IDQRSVELL---SEKHPE-LRIHHLDVLQADYPQLSIDEKGPLSIIGNLPYYITSQILFA 126

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              A +      S T+  Q EVG RI A      YG LSV+        + F I P VF+
Sbjct: 127 LADA-SHSNAVRSATVTMQYEVGRRIVAPTRCKDYGILSVVFQLYADCKIHFKIPPTVFY 185

Query: 197 PSPKVTSTVI--HFIPHLNPIPCCLE---------SLKKITQEAFGKRRKTLRQSLKRLG 245
           P PKV S +I  HF+      P  L          +L+ +    F +RRKT+R  L+ L 
Sbjct: 186 PQPKVDSALIGLHFLG-----PTALRRRLAGVSPSNLRAVVTATFQQRRKTVRNGLRNLA 240

Query: 246 GENLLHQAGIE--TNLRAENLSIEDFCRITNIL 276
               L+Q   +  +++R E L+   F  +T +L
Sbjct: 241 LTFALNQELPKNWSSMRPEELTPGQFVEVTRLL 273


>gi|116750733|ref|YP_847420.1| dimethyladenosine transferase [Syntrophobacter fumaroxidans MPOB]
 gi|116699797|gb|ABK18985.1| dimethyladenosine transferase [Syntrophobacter fumaroxidans MPOB]
          Length = 285

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 136/269 (50%), Gaps = 16/269 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQ+FL      ++I   +      TV+EIG G G LT+ +L L AR + ++E D+
Sbjct: 20  PRKRFGQHFLDHSATAEQIVRCAEFDASDTVVEIGPGLGALTRFILPLAAR-LHLVELDR 78

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWIS 139
                L++ +    +++ + + DA+  DF      +  P+ ++ NLPYNI + LLF+ + 
Sbjct: 79  DLATYLEE-NLPAGSQVRLHRQDAVTFDFNALAEAAGQPLVVLGNLPYNITSPLLFHLLD 137

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           +       +    + QKEVG R+TA   +  YG LSVL     +   +F + P  F+P P
Sbjct: 138 SVQA---VKRAVFMVQKEVGARLTASPGTRDYGVLSVLLAVYAEVKRLFTVGPQQFYPPP 194

Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGG------ENLL 250
           KV S V+  +   +P+P  L     L+++   AF +RRKTL  SLK   G      +++ 
Sbjct: 195 KVESMVLR-LDFKHPLPPDLPPFGLLRRLVSIAFQQRRKTLHNSLKGTYGGQGGGLQDVF 253

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
            + G+   LR + L+   F  +   L ++
Sbjct: 254 AKCGVAPGLRPDALTPGQFVELCKALKES 282


>gi|148239702|ref|YP_001225089.1| dimethyladenosine transferase [Synechococcus sp. WH 7803]
 gi|166221710|sp|A5GLH7|RSMA_SYNPW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|147848241|emb|CAK23792.1| Dimethyladenosine transferase [Synechococcus sp. WH 7803]
          Length = 280

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 123/256 (48%), Gaps = 15/256 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQ++L D  +L +I ++S   D   V+E+G G G LT+ LL   A  V  +E D+
Sbjct: 8   PRKRFGQHWLRDERVLDRILDASDLGDDDRVLEVGPGRGALTERLLASSAAAVHAVELDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+D     P R  + + D L V      +     +++AN+PYNI   LL   I  
Sbjct: 68  DLVAGLQDRFGDSP-RFSLREGDVLAVPL-TLPDGQRATKVVANIPYNITGPLLERLIGR 125

Query: 141 DTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              P  P ++ L LL QKEV ERI A+  +  +  LSV      K + +  + P  F P 
Sbjct: 126 LDQPVDPPYQRLVLLVQKEVAERIRARPGASSFSALSVRMQLLAKCSSVCPVPPRCFQPP 185

Query: 199 PKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLR------QSLKRLGGENL 249
           PKV S VI   P      P P     ++++ ++AF  RRK LR      Q L  L  E +
Sbjct: 186 PKVHSEVIRLDPLPLEQRPDPVICRRVERLLKQAFLARRKMLRNTLTVSQPLSEL--ETI 243

Query: 250 LHQAGIETNLRAENLS 265
             QAGI+   R + ++
Sbjct: 244 TQQAGIDLRQRPQEVA 259


>gi|182415366|ref|YP_001820432.1| ribosomal RNA adenine methylase transferase [Opitutus terrae
           PB90-1]
 gi|254807877|sp|B1ZW80|RSMA_OPITP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|177842580|gb|ACB76832.1| ribosomal RNA adenine methylase transferase [Opitutus terrae
           PB90-1]
          Length = 277

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 14/265 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L+     PK+++GQNFL+D NI++K  E +    G  V+EIG G G LT  LL  GA
Sbjct: 9   RELLAQLGHQPKRFLGQNFLVDGNIVRKSLELAQVRRGDAVVEIGPGLGTLTGALLEAGA 68

Query: 71  RKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYN 128
            +V  +EKD+     L   +  +HP+   +++ DA++          ++  +I+ANLPY 
Sbjct: 69  -EVWAVEKDRTLHAHLSSTLQPRHPDTFHLLEADAVEHPLADLPAAHAAAFKIVANLPYA 127

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T     W+ A    P  E + L+ Q+E  +R  A   S  +G +SV      +     
Sbjct: 128 IAT----PWLDAVLGGPLPERMVLMLQQEAAQRYVAMPGSKSFGAISVFLQSAYEVAPGH 183

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT----LRQSLKRL 244
            +    FFP P V S ++H +    P     E +K + +  F +RRK     LR  L   
Sbjct: 184 RVEASCFFPRPDVDSYLLHLVRRAEPFVFTPE-VKALIRSVFQQRRKQIGGLLRDRLPDH 242

Query: 245 GGENL--LHQAGIETNLRAENLSIE 267
           G   L  L  AG+ +  R E +  E
Sbjct: 243 GASWLARLTAAGLSSLTRPEAIPTE 267


>gi|50842010|ref|YP_055237.1| dimethyladenosine transferase [Propionibacterium acnes KPA171202]
 gi|289424169|ref|ZP_06425952.1| dimethyladenosine transferase [Propionibacterium acnes SK187]
 gi|289428439|ref|ZP_06430125.1| dimethyladenosine transferase [Propionibacterium acnes J165]
 gi|295130092|ref|YP_003580755.1| dimethyladenosine transferase [Propionibacterium acnes SK137]
 gi|62900512|sp|Q6AAD7|RSMA_PROAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|50839612|gb|AAT82279.1| dimethyladenosine transferase [Propionibacterium acnes KPA171202]
 gi|289154866|gb|EFD03548.1| dimethyladenosine transferase [Propionibacterium acnes SK187]
 gi|289158411|gb|EFD06628.1| dimethyladenosine transferase [Propionibacterium acnes J165]
 gi|291376481|gb|ADE00336.1| dimethyladenosine transferase [Propionibacterium acnes SK137]
 gi|313765357|gb|EFS36721.1| dimethyladenosine transferase [Propionibacterium acnes HL013PA1]
 gi|313772654|gb|EFS38620.1| dimethyladenosine transferase [Propionibacterium acnes HL074PA1]
 gi|313792880|gb|EFS40947.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA1]
 gi|313802667|gb|EFS43889.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA2]
 gi|313806680|gb|EFS45187.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA2]
 gi|313810877|gb|EFS48591.1| dimethyladenosine transferase [Propionibacterium acnes HL083PA1]
 gi|313814612|gb|EFS52326.1| dimethyladenosine transferase [Propionibacterium acnes HL025PA1]
 gi|313815236|gb|EFS52950.1| dimethyladenosine transferase [Propionibacterium acnes HL059PA1]
 gi|313817223|gb|EFS54937.1| dimethyladenosine transferase [Propionibacterium acnes HL046PA2]
 gi|313821715|gb|EFS59429.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA1]
 gi|313824394|gb|EFS62108.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA2]
 gi|313826751|gb|EFS64465.1| dimethyladenosine transferase [Propionibacterium acnes HL063PA1]
 gi|313828541|gb|EFS66255.1| dimethyladenosine transferase [Propionibacterium acnes HL063PA2]
 gi|313831996|gb|EFS69710.1| dimethyladenosine transferase [Propionibacterium acnes HL007PA1]
 gi|313834464|gb|EFS72178.1| dimethyladenosine transferase [Propionibacterium acnes HL056PA1]
 gi|313840303|gb|EFS78017.1| dimethyladenosine transferase [Propionibacterium acnes HL086PA1]
 gi|314916000|gb|EFS79831.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA4]
 gi|314916905|gb|EFS80736.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA1]
 gi|314921546|gb|EFS85377.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA3]
 gi|314926820|gb|EFS90651.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA3]
 gi|314931130|gb|EFS94961.1| dimethyladenosine transferase [Propionibacterium acnes HL067PA1]
 gi|314954813|gb|EFS99219.1| dimethyladenosine transferase [Propionibacterium acnes HL027PA1]
 gi|314958979|gb|EFT03081.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA1]
 gi|314961274|gb|EFT05375.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA2]
 gi|314964298|gb|EFT08398.1| dimethyladenosine transferase [Propionibacterium acnes HL082PA1]
 gi|314969398|gb|EFT13496.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA1]
 gi|314974466|gb|EFT18561.1| dimethyladenosine transferase [Propionibacterium acnes HL053PA1]
 gi|314977344|gb|EFT21439.1| dimethyladenosine transferase [Propionibacterium acnes HL045PA1]
 gi|314980500|gb|EFT24594.1| dimethyladenosine transferase [Propionibacterium acnes HL072PA2]
 gi|314985557|gb|EFT29649.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA1]
 gi|314987513|gb|EFT31604.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA2]
 gi|314989021|gb|EFT33112.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA3]
 gi|315078686|gb|EFT50717.1| dimethyladenosine transferase [Propionibacterium acnes HL053PA2]
 gi|315081854|gb|EFT53830.1| dimethyladenosine transferase [Propionibacterium acnes HL078PA1]
 gi|315082653|gb|EFT54629.1| dimethyladenosine transferase [Propionibacterium acnes HL027PA2]
 gi|315086362|gb|EFT58338.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA3]
 gi|315087610|gb|EFT59586.1| dimethyladenosine transferase [Propionibacterium acnes HL072PA1]
 gi|315097535|gb|EFT69511.1| dimethyladenosine transferase [Propionibacterium acnes HL038PA1]
 gi|315099754|gb|EFT71730.1| dimethyladenosine transferase [Propionibacterium acnes HL059PA2]
 gi|315101941|gb|EFT73917.1| dimethyladenosine transferase [Propionibacterium acnes HL046PA1]
 gi|315106552|gb|EFT78528.1| dimethyladenosine transferase [Propionibacterium acnes HL030PA1]
 gi|315110340|gb|EFT82316.1| dimethyladenosine transferase [Propionibacterium acnes HL030PA2]
 gi|327331611|gb|EGE73350.1| dimethyladenosine transferase [Propionibacterium acnes HL096PA2]
 gi|327333594|gb|EGE75314.1| dimethyladenosine transferase [Propionibacterium acnes HL096PA3]
 gi|327445378|gb|EGE92032.1| dimethyladenosine transferase [Propionibacterium acnes HL013PA2]
 gi|327446992|gb|EGE93646.1| dimethyladenosine transferase [Propionibacterium acnes HL043PA1]
 gi|327449971|gb|EGE96625.1| dimethyladenosine transferase [Propionibacterium acnes HL043PA2]
 gi|327454815|gb|EGF01470.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA3]
 gi|327455672|gb|EGF02327.1| dimethyladenosine transferase [Propionibacterium acnes HL083PA2]
 gi|327456839|gb|EGF03494.1| dimethyladenosine transferase [Propionibacterium acnes HL092PA1]
 gi|328755871|gb|EGF69487.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA1]
 gi|328756654|gb|EGF70270.1| dimethyladenosine transferase [Propionibacterium acnes HL025PA2]
 gi|328758625|gb|EGF72241.1| dimethyladenosine transferase [Propionibacterium acnes HL020PA1]
 gi|328761742|gb|EGF75257.1| dimethyladenosine transferase [Propionibacterium acnes HL099PA1]
 gi|332674932|gb|AEE71748.1| ribosomal RNA small subunit methyltransferase A [Propionibacterium
           acnes 266]
          Length = 298

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 26/286 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLL 66
           S++ I     + P K  GQNF+ D N +++I   +  G+ D   VIE+G G G+LT  LL
Sbjct: 11  SIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAAD--RVIEVGPGLGSLTLGLL 68

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRII 122
             GA +V+ IE D+     L   ++ + P    RLE++  DAL V   K    + P  ++
Sbjct: 69  ETGA-EVVAIEIDEVLANQLPGTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTALV 124

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + ++     P W +  ++ Q EV +R+ A   S  YG  S    W  
Sbjct: 125 ANLPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWYA 181

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI----PHLNPI-PCCLES-LKKITQEAFGKRRKT 236
           +A  + ++ P VF+P P V S ++       PH++   P    S + ++   AF  RRK 
Sbjct: 182 EAIRVGNVPPTVFWPVPNVDSGLVRITRRRPPHVDGRDPRVTRSQVFRVVDAAFASRRKM 241

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LR +L  L G       L+  AGI+   R E L I D  R+   L 
Sbjct: 242 LRSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVVEALA 287


>gi|326797450|ref|YP_004315269.1| ribosomal RNA small subunit methyltransferase A [Sphingobacterium
           sp. 21]
 gi|326548214|gb|ADZ76599.1| Ribosomal RNA small subunit methyltransferase A [Sphingobacterium
           sp. 21]
          Length = 270

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 122/255 (47%), Gaps = 10/255 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK++GQ+FL D N  K+I  +     G   V+E+G G G L+  LL     +  +I+ D 
Sbjct: 17  KKHLGQHFLTDKNTAKRIVNALRPEKGFDKVLEVGPGMGILSDFLLEDKRFESWLIDLDI 76

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    LK        RL  I  D L +DF   F    P+ II N PYNI +++LF  +  
Sbjct: 77  ESVEFLKTKYPSLDKRL--IHGDFLLLDFASVF--PGPLAIIGNFPYNISSQILFKVLEH 132

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    L  +FQKEV ER  A+     YG LSV          +F +    F P PK
Sbjct: 133 RHQVI---ELVGMFQKEVAERCAAKPGGKDYGILSVFLQAYYDIAYLFTVKAGAFNPPPK 189

Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    + ++ + C     +KI +  F +RRKTLR +L  +  +  +       +L
Sbjct: 190 VLSGVIRLERNSIDRLACNENLFQKIVKAGFNQRRKTLRNALSVIADKARMPNHPF-LDL 248

Query: 260 RAENLSIEDFCRITN 274
           RAE LS++DF  +TN
Sbjct: 249 RAERLSVDDFIELTN 263


>gi|82705284|ref|XP_726907.1| dimethyladenosine transferase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482506|gb|EAA18472.1| dimethyladenosine transferase, putative [Plasmodium yoelii yoelii]
          Length = 423

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 147/318 (46%), Gaps = 58/318 (18%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAES-------------------------- 42
           ++KT+L   +  PK+ +GQN+L D NI+KK+ ++                          
Sbjct: 99  NIKTLLPSREFKPKRSLGQNYLKDENIIKKMVQAIELDASQFVLMKEKKKKILLKSKKDK 158

Query: 43  ----------------------SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
                                 S   +G  +IE+G G G L++ L     + +  IE D 
Sbjct: 159 IKDETDEQNKLKINENNCKNMESLKNEGNGIIELGCGLGQLSKHLFK-KYKNMTAIEIDS 217

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139
           +   I   IS   P   + I DD L+++++    N ++ + +I NLP+ I +++LF  + 
Sbjct: 218 RALTI---ISRTMPG-FDFIHDDVLQINYKDLSINKNTKLSVIGNLPFYITSQILFCLLD 273

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +  + E   +  Q EVG+RI A+ N   Y  LS+L    T   ++F I  + F+P P
Sbjct: 274 ---FYKYIEQAVVTIQYEVGQRIIAKPNDKDYSILSILFSLYTHPYLLFKIPSNAFYPIP 330

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-TN 258
           KV + V+  I   +   C L  LK+I + +F +RRK L+ SLKRL     +    +  ++
Sbjct: 331 KVEAAVMKIIFKKHIFNCNLLFLKQILKHSFQQRRKKLKSSLKRLLNMYNIQNVPLPFSD 390

Query: 259 LRAENLSIEDFCRITNIL 276
           LR + L  E F  +TNIL
Sbjct: 391 LRPQQLYPEQFIELTNIL 408


>gi|15827037|ref|NP_301300.1| dimethyladenosine transferase [Mycobacterium leprae TN]
 gi|221229515|ref|YP_002502931.1| dimethyladenosine transferase [Mycobacterium leprae Br4923]
 gi|27151599|sp|Q9CD52|RSMA_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807875|sp|B8ZU59|RSMA_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|13092584|emb|CAC29749.1| putative dimethyladenosine transferase [Mycobacterium leprae]
 gi|219932622|emb|CAR70334.1| putative dimethyladenosine transferase [Mycobacterium leprae
           Br4923]
          Length = 306

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 136/288 (47%), Gaps = 19/288 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ ++   +  P+K +GQNF+ D N ++++  +S       V+E+G G G+LT  LL  G
Sbjct: 19  IRWLVKELECRPRKSLGQNFVHDANTVRRVVSTSRVNRSDFVLEVGPGFGSLTLALLDCG 78

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  IE D      L    ++H N    RL +   D L   F +    + P  ++ANL
Sbjct: 79  A-AVSAIEIDPVLAGRLPQTVAEHSNNEIHRLTVCNRDVLS--FRRGDLATEPTALVANL 135

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+    L + ++     P   ++T++ Q EV ER+ A+     YG  SV   +  +  
Sbjct: 136 PYNVAVPALLHLLAEF---PSIRTVTVMVQAEVAERLAAEPGGKDYGVPSVKLSFFGRVR 192

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL-NPIP---CCLESLKKITQEAFGKRRKTLRQSL 241
               +SP VF+P P+V S ++    +  +P P        + ++   AF +RRKT R + 
Sbjct: 193 RCGMVSPTVFWPIPRVYSGLVRVDRYATSPWPTDDAFRRQVFELVDIAFTQRRKTSRNAF 252

Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284
            +  G      N L  A I+   R E LSI+DF R+        D A+
Sbjct: 253 VKWAGSSNESANRLLAASIDPARRGETLSIDDFVRLLRRSDGRDDAAV 300


>gi|212278083|gb|ACJ23056.1| KsgA [Neisseria gonorrhoeae]
          Length = 265

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 131/262 (50%), Gaps = 11/262 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           D      F     ++ +KEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 121 DDVADMHFMLQKEVVERKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 180

Query: 199 PKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 181 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 240

Query: 257 TNLRAENLSIEDFCRITNILTD 278
              RAE+++ E +  ++N L D
Sbjct: 241 PQDRAEHIAPEKYVALSNYLAD 262


>gi|270307774|ref|YP_003329832.1| dimethyladenosine transferase [Dehalococcoides sp. VS]
 gi|270153666|gb|ACZ61504.1| dimethyladenosine transferase [Dehalococcoides sp. VS]
          Length = 291

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 141/270 (52%), Gaps = 15/270 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y +  +K +GQ+FL+   +L KI  ++      TVIE+G G G LT+ LL   A
Sbjct: 20  KEMMEGYTLKARKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELLE-RA 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +VI +E D +    L +    +PN  +II  D LK+  E+    + P +++ANLPY I 
Sbjct: 79  GQVIAVELDDKLVNALTEKFKAYPN-FKIIHSDILKISPEEILGQNIPYKLVANLPYYIT 137

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +L  ++ A+  P   E + ++ QKEV + + A+      G L++   +     ++  +
Sbjct: 138 SAVLRQFLEAEIKP---ELMVVMVQKEVAKNMVAKTGD--MGLLTLSVRFYGNPALVATV 192

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRLGGEN 248
               F+P P+V S ++  +     I   + ++   K+ +  FG RRKTL  +L +  G +
Sbjct: 193 PAGAFYPPPEVDSAIVKVVIPQTTIMDGVSAVDFFKLARAGFGTRRKTLLNALAQGLGIS 252

Query: 249 ------LLHQAGIETNLRAENLSIEDFCRI 272
                 LL ++GI+   RAE LS+E++ R+
Sbjct: 253 KQDILLLLERSGIDPARRAETLSMEEWKRL 282


>gi|257062209|ref|YP_003140097.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802]
 gi|256592375|gb|ACV03262.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802]
          Length = 272

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L +I E++       V+EIG G G LT+ LL L  + ++ +E D+
Sbjct: 4   PRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPL-VQSIVAVELDR 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFN 136
                L   S  + N   +++ D L +D     E+F       +++AN+PYNI + +L  
Sbjct: 63  DLCYRLAK-SFGNFNHFLLLEGDILSLDLTTQLEQFPQFQPINKVVANIPYNITSPILEK 121

Query: 137 WISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            + +   P  P +E + LL QKEV +RI A   S  YG LSV T +  +   + ++    
Sbjct: 122 LLGSIAHPQHPSYELIVLLMQKEVAQRIVASPQSKAYGALSVRTQYLAQCDYICEVPSKA 181

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249
           F P PKV S VI   P     P    + L ++ +  F  RRK L  +LK +   +    L
Sbjct: 182 FDPPPKVDSAVIRLTPRSLETPAINPQKLDQLVKLGFANRRKMLHNNLKSIIDRDHLTLL 241

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L Q  I   +RAE LS+E +   +N+L
Sbjct: 242 LDQLQINPQVRAEELSLEQWIMFSNLL 268


>gi|41407073|ref|NP_959909.1| dimethyladenosine transferase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|62900553|sp|Q741W2|RSMA_MYCPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|41395424|gb|AAS03292.1| KsgA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 318

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 134/283 (47%), Gaps = 19/283 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +    +  P+K +GQNF+ D N ++++  +SG      V+E+G G G LT  LL  G
Sbjct: 22  IRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGPLTLALLDRG 81

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L    ++H +    RL ++  D L +  ++      P  ++ANL
Sbjct: 82  A-HVTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDEL--AEPPTAVVANL 138

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+    L + ++     P   ++T++ Q EV ER+ A+     YG  SV   +  +  
Sbjct: 139 PYNVAVPALLHLLAEF---PSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFGRVR 195

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPI---PCCLESLKKITQEAFGKRRKTLRQSL 241
               +SP VF+P P+V S ++    +  +P    P     + ++   AFG+RRKT R + 
Sbjct: 196 RCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPTDPAFRRQVFELVDIAFGQRRKTCRNAF 255

Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
               G      + L  A I+   R E LSI+DF R+     D 
Sbjct: 256 VDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298


>gi|330818270|ref|YP_004361975.1| Dimethyladenosine transferase [Burkholderia gladioli BSR3]
 gi|327370663|gb|AEA62019.1| Dimethyladenosine transferase [Burkholderia gladioli BSR3]
          Length = 275

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 127/274 (46%), Gaps = 23/274 (8%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI- 74
           H     +K  GQNFL+DL ++  I  +     G  ++EIG G G LT  ++   A   + 
Sbjct: 7   HQGHFARKRFGQNFLVDLGVIDSIVNAIRPERGERMVEIGPGLGALTGPVIERLATPELP 66

Query: 75  --VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIG 130
              +E D+     LK    +   RLE+   DAL  DF           +RII NLPYNI 
Sbjct: 67  LHAVELDRDLIGRLK---QRFGERLELHAGDALAFDFGSLALPGDKPSLRIIGNLPYNIS 123

Query: 131 TRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           + LLF+ +       F E +     + Q EV ER+ A+  S  + RLSV+  +R     +
Sbjct: 124 SPLLFHLMD------FAERVVDQHFMLQNEVVERMVAEPGSKAFSRLSVMLQYRYVMDKL 177

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            D+ P  F P PKV S ++  IP+    L  +   +  L ++   AF +RRK LR +L  
Sbjct: 178 IDVPPESFQPPPKVDSAIVRMIPYAPHELAAVDVAV--LGEVVTAAFSQRRKMLRNTLGA 235

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                     G +   RAE++ ++++  +   ++
Sbjct: 236 YRDAIDFDALGFDLARRAEDVGVDEYVGLAQAVS 269


>gi|256810093|ref|YP_003127462.1| dimethyladenosine transferase [Methanocaldococcus fervens AG86]
 gi|256793293|gb|ACV23962.1| dimethyladenosine transferase [Methanocaldococcus fervens AG86]
          Length = 268

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ FL+D N + K  E++       V+EIG G G LT+ L    A+KV +IE D+
Sbjct: 4   PKKKLGQCFLIDKNFVNKAVEAANLTKDDVVLEIGLGKGILTEELAK-NAKKVYIIEIDK 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139
              P    +  ++ N +EII  DA+KVD     FN     +++ANLPY I + + F  + 
Sbjct: 63  NLEPYANRLKEKY-NNIEIIWGDAVKVDLSNLDFN-----KVVANLPYQISSPITFKLLK 116

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  ++   L++Q E  +R+ A++ +  YGRLSV    R    ++  + P+ F P P
Sbjct: 117 KG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIIAKVPPNAFSPKP 171

Query: 200 KVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241
           KV S ++   P+ N      E       +  F  R K++R++L
Sbjct: 172 KVFSAIVKIKPNKNKYHIENEDFFDNFLRAIFQHRNKSVRRAL 214


>gi|17230721|ref|NP_487269.1| dimethyladenosine transferase [Nostoc sp. PCC 7120]
 gi|27151584|sp|Q8YS62|RSMA_NOSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|17132324|dbj|BAB74928.1| rRNA (adenine-N6,N6)-dimethyltransferase [Nostoc sp. PCC 7120]
          Length = 271

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 130/268 (48%), Gaps = 15/268 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L  I +++       ++EIG G G LT+ LL    + ++ +E D+
Sbjct: 4   PRKLFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLP-AVQSLVAVEIDR 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRL--- 133
               +L     +  N L ++Q D L +D       F     P +++AN+PYNI   +   
Sbjct: 63  DLCELLAKQLGKKENFL-LLQGDFLTIDLAANLGSFPKFQKPNKVVANIPYNITGPIIEK 121

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   IS     PF +S+ LL QKEV ER+ A+  S  +G LSV   +      + D+   
Sbjct: 122 LLGTISNPNLEPF-DSIVLLIQKEVAERLYAKSGSRTFGALSVRVQYLADCEFICDVPAS 180

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248
            F P PKV S V+   P    IP    + L+ + +  FG +RK LR +L+ +   +    
Sbjct: 181 AFHPPPKVDSAVVRLRPRQIEIPVNDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLSQ 240

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
           LL Q  I    RAE++S + + ++ N+L
Sbjct: 241 LLEQLNINPQARAEDISTQQWVKLANLL 268


>gi|218295759|ref|ZP_03496555.1| ribosomal RNA adenine methylase transferase [Thermus aquaticus
           Y51MC23]
 gi|218243918|gb|EED10445.1| ribosomal RNA adenine methylase transferase [Thermus aquaticus
           Y51MC23]
          Length = 278

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 106/203 (52%), Gaps = 11/203 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ +L  + +   +  GQNFL+    L +I E++    G  V E+G G G LT+ L   
Sbjct: 10  AVRELLERHGLFADRRFGQNFLVSEAHLHRIVEAARPFTG-PVYEVGPGLGVLTRALAEA 68

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GA +V+ IEKD +  P+L++     P RL  +  DAL   +E+    S    ++ANLPYN
Sbjct: 69  GA-EVVAIEKDLRLKPVLEETLKGLPVRL--VFQDALAYPWEEVPEGSL---LVANLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+   +    +      L  L QKEV ER+TA+  +P YG LS+      +A  + 
Sbjct: 123 IATSLVTRLLKTGRF----ARLVFLVQKEVAERMTARPKTPAYGLLSLRVTHHAEAEKLL 178

Query: 189 DISPHVFFPSPKVTSTVIHFIPH 211
           D+ P  FFP PKV S ++   P 
Sbjct: 179 DLPPGAFFPPPKVVSALVRLHPQ 201


>gi|161523771|ref|YP_001578783.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616]
 gi|189351468|ref|YP_001947096.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616]
 gi|226729764|sp|A9AFE4|RSMA_BURM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|160341200|gb|ABX14286.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616]
 gi|189335490|dbj|BAG44560.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616]
          Length = 275

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 29/277 (10%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--- 72
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT+ L+   A     
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIARLATPETP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+     LK    +    LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 67  LHAVELDRDLIARLK---QRFGALLELHAGDALAFDFR---SLAAPGDAPSLRIVGNLPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     +
Sbjct: 121 NISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKL 177

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
            D+ P  F P PKV S ++  IP+       ++P+      L +I   AF +RRK LR +
Sbjct: 178 IDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPV-----LLGEIVTAAFSQRRKMLRNT 232

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L            G +   RAE++S+ ++  +   L 
Sbjct: 233 LGDYRETIDFDALGFDLARRAEDVSVAEYVGVAQALA 269


>gi|17545237|ref|NP_518639.1| dimethyladenosine transferase [Ralstonia solanacearum GMI1000]
 gi|27151581|sp|Q8Y219|RSMA_RALSO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|17427528|emb|CAD14046.1| probable dimethyladenosine transferase
           (s-adenosylmethionine-6-n',n'-adenosyl(rrna)
           dimethyltransferase) (16s rrna dimethylase) (high level
           kasugamycin resistance protein ksga) (kasugamycin
           dimethyltransferase) [Ralstonia solanacearum GMI1000]
          Length = 281

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 125/261 (47%), Gaps = 15/261 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+  +   +V+ +++D 
Sbjct: 15  RKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRD- 73

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS- 139
               ++  +  +  ++L +   DAL  DF         +RI+ NLPYNI + LLF+  + 
Sbjct: 74  ----LVARLQRRFGDKLIVHAGDALAFDFGTLHVPGRSLRIVGNLPYNISSPLLFHLSAF 129

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           AD           + QKEV +R+ A   S  + RLSV+   R    ++ ++ P  F P P
Sbjct: 130 ADRV----RDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLEVPPGSFNPPP 185

Query: 200 KVTSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           KV S V+  IP     +P  P  + +L  +   AF +RRK LR +L  L         G 
Sbjct: 186 KVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFDALGF 245

Query: 256 ETNLRAENLSIEDFCRITNIL 276
           +   RAE + + DF  + N L
Sbjct: 246 DLGRRAEEVPVADFVAVANAL 266


>gi|226227288|ref|YP_002761394.1| dimethyladenosine transferase [Gemmatimonas aurantiaca T-27]
 gi|226090479|dbj|BAH38924.1| dimethyladenosine transferase [Gemmatimonas aurantiaca T-27]
          Length = 303

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 124/264 (46%), Gaps = 16/264 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQ+FL D  +L  IA++ G +   TVIEIG G G LT +L+   AR+VI IE D+
Sbjct: 27  PRKRFGQHFLKDTRVLSSIADALGDVRDRTVIEIGPGRGALTDLLVER-ARRVIAIEIDR 85

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   +  P+ +EI++ D L+ +         P  +  N+PY I T ++F+ +  
Sbjct: 86  DLAAHLRARYADRPH-VEIVEADVLQTNLAALAG--EPYVLAGNVPYYITTPIIFHALVQ 142

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P  +    L QKEV +R+ A      YG LSV         ++  + P  F P+P 
Sbjct: 143 ----PRPDVAVYLVQKEVADRMAAPPGDKIYGALSVNLQAVVGVELIRKVPPSAFNPAPA 198

Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQ 252
           V S V+  +P  + +  P      +     AFG RRK L + ++ +          ++  
Sbjct: 199 VDSAVVRVVPRPDAVVEPELEARFRSFVLAAFGLRRKQLIRVVRTIASFDAERAGAVIAA 258

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
            G+    R E L+  +F ++   L
Sbjct: 259 CGLSPEARPETLTPAEFAKLVRAL 282


>gi|288930049|ref|ZP_06423889.1| dimethyladenosine transferase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288328619|gb|EFC67210.1| dimethyladenosine transferase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 267

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 130/269 (48%), Gaps = 29/269 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+FL DL I ++IA++  +   + ++E+G G G LTQ L T   R + V+E D 
Sbjct: 6   PKKHLGQHFLTDLGIAQRIADTVDACPELPILEVGPGMGVLTQYLATKN-RPLRVVEIDT 64

Query: 81  QF-------FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           +        FP+L +          ++ +D L++D    F    P  +  N PY+I +++
Sbjct: 65  ESVAFLYNNFPLLAE---------NVLGEDFLRMDLASVFT-GQPFVLTGNYPYDISSQI 114

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +      P     T + Q+EV  RI +Q  +  YG LSVL         +F +   
Sbjct: 115 FFKMLDNKHLIP---CCTGMIQREVALRIASQPGTKAYGILSVLIQAWYDVEYLFTVDET 171

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL-----GGE 247
           VF P PKV S VI    +      C E L K++ +  F +RRK LR SL++L        
Sbjct: 172 VFNPPPKVKSAVIRMARNKVENLGCNEILFKRVVKTVFNQRRKMLRVSLRQLFAGMPASP 231

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
               Q       R E LS+ +F ++TN++
Sbjct: 232 EFYAQEMFTR--RPEQLSVAEFVQLTNMV 258


>gi|220908859|ref|YP_002484170.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425]
 gi|219865470|gb|ACL45809.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425]
          Length = 284

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 136/270 (50%), Gaps = 13/270 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI P+K  GQ++L     L++I  ++      TV+EIG G G LT+ LL    + ++ IE
Sbjct: 3   KIRPRKQFGQHWLRSDRALQRILAAAELSVEDTVLEIGPGRGVLTRSLLD-RVKSLLAIE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDD----ALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            D+  +  L+   +   N L ++Q +     L+    +   I  P +++AN+PYNI   +
Sbjct: 62  IDRDLYSFLQSEFAGK-NNLRLVQGNFLELELEKLLTEETGIGFPNKVVANIPYNITGPI 120

Query: 134 LFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           L   +   A   P  +E + LL QKEV +R+ A  NS  YG LSV   +  +  ++  + 
Sbjct: 121 LEKLLGTIAQPNPQPFELIVLLVQKEVADRLAAHPNSSAYGGLSVRVQYLAQCELICPVP 180

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN-- 248
              F+P PKV S VI   P+  P      + L ++ +  F  RRK LR +LK +   +  
Sbjct: 181 AGAFYPPPKVDSAVIRLRPYHPPTGATHPAFLDQLVRMGFATRRKMLRNNLKSVVERDRL 240

Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNIL 276
             LL Q  +    RAE+LS+  +  ++N+L
Sbjct: 241 SELLQQLDLNPQARAEDLSLSQWINLSNLL 270


>gi|145593340|ref|YP_001157637.1| dimethyladenosine transferase [Salinispora tropica CNB-440]
 gi|145302677|gb|ABP53259.1| dimethyladenosine transferase [Salinispora tropica CNB-440]
          Length = 289

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 135/270 (50%), Gaps = 15/270 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N +++I  ++G      V+E+G G G+LT  LL   
Sbjct: 10  IRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLTAQDVVLEVGPGLGSLTLALLPA- 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L + +++H     +RL + + DAL+V   +  +  +P  ++ANL
Sbjct: 69  AAHVHAVEIDPVLAAALPETAARHAGPAADRLSVHRADALRVTAGQLAD-PAPTALVANL 127

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++    P     L ++ QKEV +R+ A   S  YG  SV   W  +  
Sbjct: 128 PYNVAVPVVLHLLA--ELPTLRHGL-VMVQKEVADRLVAGPGSRVYGVPSVKLAWYARVH 184

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
               + P+VF+P P V S ++ F    +P +    E +  +   AF +RRKTLR +L   
Sbjct: 185 AAGKVPPNVFWPVPNVDSGLVAFTRRESPGVGVSRERIFAVVDAAFAQRRKTLRAALAGW 244

Query: 245 G-----GENLLHQAGIETNLRAENLSIEDF 269
                    +L  AG++   R E L++E F
Sbjct: 245 AGGADRAAAVLTAAGVDPGARGEALTVEQF 274


>gi|254388805|ref|ZP_05004037.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294813100|ref|ZP_06771743.1| Dimethyladenosine transferase [Streptomyces clavuligerus ATCC
           27064]
 gi|326441601|ref|ZP_08216335.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|197702524|gb|EDY48336.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325699|gb|EFG07342.1| Dimethyladenosine transferase [Streptomyces clavuligerus ATCC
           27064]
          Length = 310

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 132/276 (47%), Gaps = 19/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL   
Sbjct: 40  IRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRADDVVVEVGPGLGSLTLALLE-A 98

Query: 70  ARKVIVIEKDQQF---FP--ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           A  V+ +E D       P  IL  +  + P R  ++  DA+ V   +      P  ++AN
Sbjct: 99  ADSVVAVEIDDVLAGALPATILARMPERAP-RFSLVHSDAMLV---RELPGPPPTALVAN 154

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +  D +P    +L ++ Q EV +R+ A   +  YG  SV   W    
Sbjct: 155 LPYNVAVPVLLHML--DRFPTIERTL-VMVQAEVADRLAAAPGNKVYGVPSVKANWYADV 211

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKR 243
                I  +VF+P+P V S ++  +    P     ++ +  +   AF +RRKTLR +L  
Sbjct: 212 KRAGAIGRNVFWPAPNVDSGLVSLVRRDPPRTTATKAQVFAVVDAAFAQRRKTLRAALAG 271

Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274
             G        L  AGI    R E+L++E+F RI  
Sbjct: 272 WAGSPAAAEAALVAAGISPQARGESLTVEEFARIAE 307


>gi|126179901|ref|YP_001047866.1| dimethyladenosine transferase [Methanoculleus marisnigri JR1]
 gi|125862695|gb|ABN57884.1| dimethyladenosine transferase [Methanoculleus marisnigri JR1]
          Length = 257

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 128/266 (48%), Gaps = 32/266 (12%)

Query: 27  QNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           Q+FL+D   ++KIA   G +D  G  V+EIG G G LT+ LL   A  VI +E D     
Sbjct: 7   QHFLVDRRAVEKIA---GFVDVSGRRVLEIGPGEGILTRALLDRDA-DVIAVEIDPALVE 62

Query: 85  ILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+   +      RLEII+ DA KVD   F  +      +ANLPY++ +++ F  +    
Sbjct: 63  ELEIAFADEIGEGRLEIIRGDAKKVDIPPFEIV------VANLPYSVSSKITFRLLEIG- 115

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
               +E   L++QKE   R+ A   +P+ GRLSV+         + ++ P  F P P V 
Sbjct: 116 ----FEVAVLMYQKEFARRMVAPPGTPNVGRLSVMVQTYASVKPLLELGPGSFRPQPAVR 171

Query: 203 STVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL-- 259
           S V+   PH  P P     +   + +  F  RRKT+R+ L+   G++      I   +  
Sbjct: 172 SWVVRITPHEPPYPIADRRVYADVVRVLFSHRRKTVRKGLR--SGKDAFSPEAIGRTIAS 229

Query: 260 --------RAENLSIEDFCRITNILT 277
                   R E+L++E+F  I N ++
Sbjct: 230 LPDDLLQRRPEDLTLEEFALIANKMS 255


>gi|260577799|ref|ZP_05845733.1| dimethyladenosine transferase [Corynebacterium jeikeium ATCC 43734]
 gi|258604026|gb|EEW17269.1| dimethyladenosine transferase [Corynebacterium jeikeium ATCC 43734]
          Length = 311

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 138/295 (46%), Gaps = 33/295 (11%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           + ++ +     + P K +GQNF+ D N ++KI +++       V+EIG G G+LT  LL 
Sbjct: 13  NEIRQLAEELDLNPTKKLGQNFVHDPNTVRKIVKAADVTADDNVVEIGPGLGSLTLALLE 72

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI--RII 122
            GA  V  +E D +     P   +          +I  DA+ V  + F +   P+   ++
Sbjct: 73  TGA-SVTAVEIDPRLAEKLPATLEEQGAGEADAAVILKDAMAVTAQDFADAGRPLPTALV 131

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +  + +P   + + ++ Q EV +R+ A   S  YG  SV  G+  
Sbjct: 132 ANLPYNVSVPVLLHML--EEFPSI-DRVLVMVQLEVADRLAAGPGSKIYGVPSVKAGFYG 188

Query: 183 KATMMFDISPHVFFPSPKVTSTVI---------------HFIPHLNPIPCCLESLKK--- 224
             T    I  +VF+P+PK+ S ++                    L      +E L++   
Sbjct: 189 SVTRAATIGKNVFWPAPKIDSGLVRIDRYAEGAEPWAGGQLGADLGTEQLDVEQLRREVF 248

Query: 225 -ITQEAFGKRRKTLRQSLK-RLGG----ENLLHQAGIETNLRAENLSIEDFCRIT 273
            +   AF +RRKTLR +L    GG    E  L +AGI+  LR E LS E F ++ 
Sbjct: 249 ALADAAFLQRRKTLRAALSGHFGGGQAAEEALRRAGIDPTLRGEKLSTEQFVQLA 303


>gi|167561606|ref|ZP_02354522.1| dimethyladenosine transferase [Burkholderia oklahomensis EO147]
 gi|167568841|ref|ZP_02361715.1| dimethyladenosine transferase [Burkholderia oklahomensis C6786]
          Length = 275

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 127/273 (46%), Gaps = 23/273 (8%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ---MLLTLGARK 72
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT      L      
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPTIARLATPDSP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIG 130
           +  +E D+     LK    +  + LE+   DAL  DF           +RII NLPYNI 
Sbjct: 67  LHAVELDRDLIGRLK---QRFGDLLELHAGDALAFDFGSLALPGDKPSLRIIGNLPYNIS 123

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + LLF+ +S   +         + Q EV ER+ A+  +  + RLSV+  +R     + D+
Sbjct: 124 SPLLFHLMS---FAHVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYTMDKLIDV 180

Query: 191 SPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            P  F P PKV S ++  IPH    L P+   +  L ++   AF +RRK LR +   LGG
Sbjct: 181 PPESFQPPPKVDSAIVRMIPHAPHELQPVDPAV--LGEVVTAAFSQRRKMLRNT---LGG 235

Query: 247 ENLL---HQAGIETNLRAENLSIEDFCRITNIL 276
              L      G +   RAE++ ++++ R+   +
Sbjct: 236 YRDLVDFDALGFDLARRAEDVDVDEYVRVAQAV 268


>gi|328699748|ref|XP_003241033.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 221

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 14/196 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S++ ++  YK+   K + QNFL++  ++ +I  S+GS     V E+G GPGN+T+ ++  
Sbjct: 14  SIRDLIKLYKLRAMKELSQNFLMEPRLISRIVRSAGSFKDCEVCEVGPGPGNITRSIIQN 73

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---------I 119
              +V++IEKD++F P L+ ++   P  LE+I  D +  + E+ FN  +          I
Sbjct: 74  MPSRVLIIEKDKRFTPSLELLAESSPVPLELIFGDVMNFNLEQMFNEDNKMEWEDKCPQI 133

Query: 120 RIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
            +I NLP+N+ T L+  W+ A       W      +TL FQKEV ER+ A   +    RL
Sbjct: 134 HLIGNLPFNVSTPLIIRWLKAISERKSAWRYGRVRMTLTFQKEVAERMAAPIMTRERSRL 193

Query: 175 SVLTGWRTKATMMFDI 190
           SV+     +    F+I
Sbjct: 194 SVMCQNWCRVEHKFNI 209


>gi|312137230|ref|YP_004004567.1| dimethyladenosine transferase [Methanothermus fervidus DSM 2088]
 gi|311224949|gb|ADP77805.1| dimethyladenosine transferase [Methanothermus fervidus DSM 2088]
          Length = 283

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 106/198 (53%), Gaps = 13/198 (6%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           H  K IL  Y I   + +GQNFL++  I  KI   +      TV+EIG G G LT + + 
Sbjct: 9   HETKYILKKYNISLSRRLGQNFLINEYIRNKIINYANLNKKDTVLEIGPGIGTLT-IPMA 67

Query: 68  LGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             A+KVI IEKD +   ILKD I     + +EII  DALK+ F KF       ++++NLP
Sbjct: 68  KYAKKVIAIEKDCKMVEILKDRIHDLKIDNIEIINADALKIKFPKFN------KVVSNLP 121

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I + + F  ++ D     +    L++QKE  +R+ A+  + +Y RLSV+  ++    +
Sbjct: 122 YTISSPITFKLLNYD-----FNLGVLMYQKEFAQRLIAKPGTSNYSRLSVMMYFKANVEL 176

Query: 187 MFDISPHVFFPSPKVTST 204
           +  I P  F P PKV S 
Sbjct: 177 LDIIPPKSFIPRPKVKSA 194


>gi|149199506|ref|ZP_01876541.1| Dimethyladenosine transferase [Lentisphaera araneosa HTCC2155]
 gi|149137441|gb|EDM25859.1| Dimethyladenosine transferase [Lentisphaera araneosa HTCC2155]
          Length = 272

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 14/277 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   L + L  Y I P K  GQNFL+D N+L  +  S     G T++E+G G G LT+ +
Sbjct: 2   KKAELLSTLEKYGIAPAKSRGQNFLIDNNLLDAMCRSMDIQAGETILEVGPGAGVLTREM 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L LG   V  +E D   F I + +S   +H  +  + + DA KVD+++  ++    R +A
Sbjct: 62  LKLGG-IVHAVEFD---FAIQRYLSENLEH-EKFTLHKGDACKVDYKEILDLPREFRCLA 116

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I +  +F  I ++   P  E +  L Q+E+ ER+ A  ++ +YG L+V       
Sbjct: 117 NLPYAISS--IFIAIMSELESPPLE-MYFLLQREMAERLAADNSTKNYGSLTVRVQALYD 173

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK 242
             ++  + P VFFP PKV S  +      N P P  L+ L  I + AF +RRK   + +K
Sbjct: 174 VNILRIVPPEVFFPPPKVQSAFVTLKLKENPPSPKVLKKLNSIVRAAFSQRRKVAFKLMK 233

Query: 243 RLGG---ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              G   E      G++   RAE ++IE + ++   L
Sbjct: 234 GTAGPKLEEAYETVGLDRKARAEQITIEQYIQLAETL 270


>gi|299067921|emb|CBJ39135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Ralstonia solanacearum CMR15]
          Length = 281

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 127/265 (47%), Gaps = 15/265 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+  +   +V+ +++D 
Sbjct: 15  RKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRD- 73

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS- 139
               ++  +  +  ++L +   DAL  DF         +RI+ NLPYNI + LLF+  + 
Sbjct: 74  ----LVARLQRRFGDKLIVHAGDALAFDFGTLHVPGRSLRIVGNLPYNISSPLLFHLSAF 129

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           AD           + QKEV ER+ A   S  + RLSV+   R    ++ ++ P  F P P
Sbjct: 130 ADRV----RDQHFMLQKEVVERMVAAPGSKAFSRLSVMLQVRYYMELVLEVPPGSFNPPP 185

Query: 200 KVTSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           KV S V+  IP     +P  P  + +L  +   AF +RRK LR +L  L         G 
Sbjct: 186 KVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFDALGF 245

Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280
           +   RAE + + +F  + N L  ++
Sbjct: 246 DLGRRAEEVPVAEFVAVANALPADR 270


>gi|300692471|ref|YP_003753466.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Ralstonia solanacearum PSI07]
 gi|299079531|emb|CBJ52209.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Ralstonia solanacearum PSI07]
          Length = 281

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 126/265 (47%), Gaps = 15/265 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+  +   +V+ +++D 
Sbjct: 15  RKRFGQNFLVDEGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRD- 73

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS- 139
               ++  +  +  ++L +   DAL  DF         +RI+ NLPYNI + LLF+  + 
Sbjct: 74  ----LVVRLQRRFGDKLIVHAGDALAFDFGALHVPGRSLRIVGNLPYNISSPLLFHLSAF 129

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           AD           + QKEV +R+ A   S  + RLSV+   R     + D+ P  F P P
Sbjct: 130 ADRI----RDQHFMLQKEVVDRMVAVPGSKAFSRLSVMLQVRYYMEPVLDVPPGSFNPPP 185

Query: 200 KVTSTVIHFIP---HLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           KV S V+  IP     +P  P  + +L  +   AF +RRK LR +L  L         G 
Sbjct: 186 KVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFDALGF 245

Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280
           +   RAE + + DF  + N L  ++
Sbjct: 246 DLGRRAEEVPVADFVAVANALPADR 270


>gi|182438149|ref|YP_001825868.1| dimethyladenosine transferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326778799|ref|ZP_08238064.1| Ribosomal RNA small subunit methyltransferase A [Streptomyces cf.
           griseus XylebKG-1]
 gi|226732628|sp|B1VUF9|RSMA_STRGG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|178466665|dbj|BAG21185.1| putative dimethyladenosine transferase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326659132|gb|EGE43978.1| Ribosomal RNA small subunit methyltransferase A [Streptomyces cf.
           griseus XylebKG-1]
          Length = 291

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 131/276 (47%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++      TV+E+G G G+LT  LL   
Sbjct: 15  IRDLAATLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDTVVEVGPGLGSLTLALLE-A 73

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V+ +E D      L   + ++ P   +R  ++  DA+ V         +P  ++ANL
Sbjct: 74  ADRVVAVEIDDVLAAALPATVQARMPERADRFALVHSDAMLV---TELPGPAPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L   +  + +P    +L ++ Q EV +R+ A+  +  YG  SV   W     
Sbjct: 131 PYNVAVPVLLTML--ERFPSIERTL-VMVQSEVADRLAARPGNKVYGVPSVKANWYADVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK- 242
               I  +VF+P+P V S ++  +    PI       +   +   AF +RRKTLR +L  
Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLVRRTEPIATTASRAEVFAVVDAAFAQRRKTLRAALSG 247

Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
                   E  L  AGI    R E L++E+F  I  
Sbjct: 248 WAGSAPAAEAALVAAGISPQARGEALTVEEFAAIAE 283


>gi|71894379|ref|YP_278487.1| dimethyladenosine transferase [Mycoplasma synoviae 53]
 gi|119365036|sp|Q4A645|RSMA_MYCS5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71851167|gb|AAZ43776.1| dimethyladenosine transferase [Mycoplasma synoviae 53]
          Length = 259

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 132/267 (49%), Gaps = 32/267 (11%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++H     KK +GQNFL D NI+ KI  +  +++   V+EIG G G+LT+ LL   A+KV
Sbjct: 1   MNHLDKNAKKSLGQNFLRDKNIINKIV-NVFNIENEKVLEIGPGQGDLTKELLK-KAKKV 58

Query: 74  IVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANLPY 127
           +  E D+     LK +I   H    E+   D L V     +F+ ++       ++AN+PY
Sbjct: 59  LAFEIDKSLIEHLKNEIKDLH---FELRDQDFLNVNLNDDEFKDYY-------VVANIPY 108

Query: 128 NIGTRLLFNWISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
            I + +L        +  FW  + + L+ QKEV +RI AQKNS +Y +LS+ + +     
Sbjct: 109 YITSDILLK-----IYRSFWNFKGIVLMVQKEVAQRIVAQKNSKNYSKLSISSQYLADVK 163

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           + F ++ + F P+PKV S VI      N     LE + K     F  RRK L  +L R  
Sbjct: 164 IEFIVNKNSFIPAPKVDSAVISLKFKDNIDKENLEKMLKFFLVCFANRRKKLTFTLNR-- 221

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRI 272
                +    +  L  E L++ D  RI
Sbjct: 222 -----NFNSTKVKLAYEKLNLSDNARI 243


>gi|295395177|ref|ZP_06805385.1| dimethyladenosine transferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971939|gb|EFG47806.1| dimethyladenosine transferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 282

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 133/264 (50%), Gaps = 22/264 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P K  GQNF++D N ++ I E +    G  V+EIG G G+LT  LL  G   V  +E D+
Sbjct: 17  PTKTRGQNFVIDPNTVRMIVEEAQLTTGEQVVEIGPGLGSLTLGLLEAG-HPVTAVEIDR 75

Query: 81  QFFPIL-KDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                L + I    P+   L +I DDAL V        ++P  ++ANLPYN+   +L ++
Sbjct: 76  LLASRLPRTIDEHAPDAHPLTLINDDALHVTELP----TTPTALVANLPYNVAVPVLMHF 131

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  +T+P    S+ ++ Q EV  R+ A   S  YG  SV   W    T   DI  +VF+P
Sbjct: 132 L--ETFPSL-NSVLVMVQAEVANRLAATPGSRVYGAPSVKAKWYGAVTRGSDIGKNVFWP 188

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKIT----QEAFGKRRKTLRQSLKRLGG-----EN 248
           +P V S ++  + H    P   E L+  T      AF +RRKTLRQ+L  L G     E 
Sbjct: 189 APNVGSGLVRIVKHAQ--PYGDEELRTATFDVVNAAFAQRRKTLRQALAGLLGSGADSEQ 246

Query: 249 LLHQAGIETNLRAENLSIEDFCRI 272
           +L  +GI+   R E L I+ F  I
Sbjct: 247 VLVDSGIDPKTRGEALDIDAFITI 270


>gi|32266673|ref|NP_860705.1| dimethyladenosine transferase [Helicobacter hepaticus ATCC 51449]
 gi|62900572|sp|Q7VGZ3|RSMA_HELHP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|32262724|gb|AAP77771.1| dimethyladenosine transferase (rRNA methylation) [Helicobacter
           hepaticus ATCC 51449]
          Length = 283

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 133/272 (48%), Gaps = 22/272 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D + L KI +S   +  I  IEIG G G+LTQ LL + +  +I  E D  
Sbjct: 7   KKRFGQNFLQDSHFLHKIIQSIPDI-PIQCIEIGVGLGDLTQELLKIES--LIAYEVDLD 63

Query: 82  FFPIL-KDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              +L K  S+Q    RL II  D L +  ++ +  +   ++++NLPY I T ++   + 
Sbjct: 64  LCSLLNKKFSNQIQSGRLNIIYKDILNLPSQQAWLHTHEYKVVSNLPYYIATHIILRLLR 123

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                 F  +  ++ QKEV ++  A      +  LSVL     KA M+F++    F P P
Sbjct: 124 ----DRFCRAFLVMTQKEVAQKFCATTGQKEFCALSVLVESFGKAKMLFEVPKEAFSPMP 179

Query: 200 KVTST--VIHFIPHLNPIP----CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           KVTS+  VIH     N I     C LES  KI   AF   RKTL ++L ++  + LL + 
Sbjct: 180 KVTSSVFVIHKYSQQNQIEDSFLCDLESFLKI---AFYAPRKTLFKNLSQVFDKKLLEEV 236

Query: 254 ----GIETNLRAENLSIEDFCRITNILTDNQD 281
                I++N RA  +  + F  I   L    D
Sbjct: 237 FENENIKSNARAHEVKTKSFHHILQFLKKRND 268


>gi|186685005|ref|YP_001868201.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102]
 gi|226732604|sp|B2J0A6|RSMA_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|186467457|gb|ACC83258.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102]
          Length = 286

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 136/281 (48%), Gaps = 29/281 (10%)

Query: 19  IIPKKYMGQNFLLDLNILKKI------AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I P+K   Q++L     L  I       ES  S  G  ++EIG G G LT+ LL L  + 
Sbjct: 2   IRPRKVFAQHWLKSEKALDAIIKAAECTESDRSPKGDCILEIGPGTGILTRRLLPL-VQS 60

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYN 128
           +I +E D+    +L     +  N L ++Q D L +D   +     N   P +++AN+PYN
Sbjct: 61  LIAVEIDRDLCQLLSKQLGKTENFL-LLQGDFLTLDLPSYLVAFPNFQKPNKVVANIPYN 119

Query: 129 IGTRLLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           I   ++   +   A+  P  ++S+ LL QKEV ER+ A+  S  +G LSV   +  +  +
Sbjct: 120 ITGPIIEKLLGTIANPNPEPFDSIVLLVQKEVAERLYAKPGSKTFGALSVRVQYLAECEL 179

Query: 187 MFDISPHVFFPSPKVTSTVIHF------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           +  +    F P+PKV S V+        IP LNP       L+   +  FG +RK LR +
Sbjct: 180 ICTVPASAFHPAPKVDSAVVRLRPRKIEIPALNP-----RQLETFLKLGFGAKRKMLRNN 234

Query: 241 LK----RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L+    R    +LL Q  I    RAE++S++ +  + N L 
Sbjct: 235 LQSVIERDRLSHLLEQLKINPQARAEDISVQQWVILANELA 275


>gi|45358550|ref|NP_988107.1| dimethyladenosine transferase [Methanococcus maripaludis S2]
 gi|62900533|sp|Q6LYK4|RSMA_METMP RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|44921308|emb|CAF30543.1| dimethyladenosine transferase related protein (rRNA methylase)
           [Methanococcus maripaludis S2]
          Length = 267

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 14/221 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ FL D N +KK    +   +   V+E+G G G LT+ L  + A+KV VIE D++ 
Sbjct: 5   KKLGQCFLKDKNFVKKAINRAEITNNDIVLEVGLGEGALTKELAKI-AKKVYVIELDERL 63

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141
            P   +I+++  N +EII  DALKVD +   FN     +I+ANLPY I + + F ++  D
Sbjct: 64  KPFADEITAEFEN-VEIIWSDALKVDLKNLGFN-----KIVANLPYQISSPITFKFLEED 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E+  L++Q E  +R+  + ++  Y RLSV   +      +  + P  F P P V
Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172

Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241
            S ++             E   KK+ +  F  R +T++++L
Sbjct: 173 NSAIVKLTKREPKYHVKDEEFFKKVLKAVFQHRNRTIKRAL 213


>gi|160934055|ref|ZP_02081442.1| hypothetical protein CLOLEP_02918 [Clostridium leptum DSM 753]
 gi|156866728|gb|EDO60100.1| hypothetical protein CLOLEP_02918 [Clostridium leptum DSM 753]
          Length = 254

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 127/253 (50%), Gaps = 24/253 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           +AE  G+ +G+  +EIG G G LT  L    A KV  IE D++  P+L++   +  N + 
Sbjct: 1   MAEECGAREGVCALEIGPGIGVLTYEL-ARRADKVAAIELDRRLLPVLEETLGEFSN-VT 58

Query: 99  IIQDDALKVDF-----EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           +I  D +K+D      E+F +   P+ + ANLPY I + ++   +  +  P   +SLT++
Sbjct: 59  VISGDVMKLDLRQVIQEQFGD--KPVCLCANLPYYITSPVIMKVLE-EKLP--VDSLTVM 113

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213
            QKE  +RI A+  S + G +S+   +  +  M+F +S   F P P V S VI       
Sbjct: 114 VQKEAAQRICAEPGSRNVGAVSIAVRYYAQPEMLFQVSRGSFLPPPNVDSAVIRLKIRET 173

Query: 214 PIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET--------NLRAEN 263
           P     +     +  + AF +RRKTL  SL    G  +  Q  +ET        N RAE 
Sbjct: 174 PAVSVEDEAFFFQTVKAAFAQRRKTLANSLS--AGLAVSKQQALETLAACEIPPNARAEE 231

Query: 264 LSIEDFCRITNIL 276
           L++E F R+++ L
Sbjct: 232 LTMERFGRLSDAL 244


>gi|167835491|ref|ZP_02462374.1| dimethyladenosine transferase [Burkholderia thailandensis MSMB43]
          Length = 275

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 17/263 (6%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---RK 72
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  ++   A     
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPDSP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIG 130
           +  +E D+     LK   ++    LE+   DAL  DF           +RII NLPYNI 
Sbjct: 67  LHAVELDRDLIGRLK---ARFGELLELHAGDALAFDFGSLARPGDQPSLRIIGNLPYNIS 123

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + LLF+ ++   + P       + Q EV ER+ A+  +  + RLSV+  +R     + D+
Sbjct: 124 SPLLFHLMA---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDKLIDV 180

Query: 191 SPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN 248
            P  F P PKV S ++  IPH  + +P    S L ++   AF +RRK LR +L   G  +
Sbjct: 181 PPESFQPPPKVDSAIVRMIPHAPHELPAVDPSVLGEVVTAAFSQRRKMLRNTLG--GYRD 238

Query: 249 LL--HQAGIETNLRAENLSIEDF 269
           L+     G +   RAE++ ++++
Sbjct: 239 LVDFDALGFDLARRAEDVGVDEY 261


>gi|72080979|ref|YP_288037.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 7448]
          Length = 250

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 126/260 (48%), Gaps = 17/260 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           MGQNFL D  I +KI E+   L    +IEIG G G LT  LL   A+ V   E D+   P
Sbjct: 1   MGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-RAKFVTCYEIDRNLIP 58

Query: 85  ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           IL     +  N+ L II +D L  + E          IIANLPY I +++LF   +   +
Sbjct: 59  IL---EKKFKNKNLRIINEDFLLAELE----FKEKKTIIANLPYYITSKILFKIFA--NF 109

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
             F + + L+ Q EV +RI A+  +P Y +LS+ + +      +F + P  FFP PKV S
Sbjct: 110 EKF-DKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFFPKPKVNS 168

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQAGIETNL 259
            V+ F    N     +E     T++ F  +RKTL  +    L +   E + +      N+
Sbjct: 169 AVVLFDFRENLEAKKMEEFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFAQNI 228

Query: 260 RAENLSIEDFCRITNILTDN 279
           R + L +  + R+ +   +N
Sbjct: 229 RPQQLDLVTYIRLADFYFNN 248


>gi|242398592|ref|YP_002994016.1| Probable dimethyladenosine transferase [Thermococcus sibiricus MM
           739]
 gi|259494260|sp|C6A222|RSMA_THESM RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|242264985|gb|ACS89667.1| Probable dimethyladenosine transferase [Thermococcus sibiricus MM
           739]
          Length = 273

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 135/283 (47%), Gaps = 37/283 (13%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +++S Y + P   +GQNFL+  +++K+  E +   +  T++EIG G G LT  L    A 
Sbjct: 7   SLISKYNLKPNSDLGQNFLIVGDVIKREVERAEIKNSETILEIGPGLGVLTDELAK-RAG 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV  IEKD +   ILK     + + +EI+Q DALK+ F +F       ++++NLPY I +
Sbjct: 66  KVYAIEKDSRIIEILK--KEYNWSNVEIMQGDALKIKFPEFN------KVVSNLPYQISS 117

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            + F  +  D     +E   L++Q E  +R+ A+    +Y RLSV+   +    ++  I 
Sbjct: 118 PITFKLLKYD-----FERAVLIYQLEFAQRMVAKPGDKNYSRLSVMVQAKVNVDLVERIG 172

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
              F+P PKV S VI   P   P    +E  + + +  F  RRK   ++LK     +  H
Sbjct: 173 RGAFYPKPKVDSAVIVMEP--KPKDEQIELNENLVKALFQHRRKLASKALK-----DSYH 225

Query: 252 QAGI----------------ETNLRAENLSIEDFCRITNILTD 278
             G+                 +N R   LSIED   I   L +
Sbjct: 226 MLGLTREDFKKFKPIIERVPHSNKRVFQLSIEDIKDIEEFLRN 268


>gi|289432297|ref|YP_003462170.1| dimethyladenosine transferase [Dehalococcoides sp. GT]
 gi|288946017|gb|ADC73714.1| dimethyladenosine transferase [Dehalococcoides sp. GT]
          Length = 291

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 137/270 (50%), Gaps = 15/270 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y +  +K +GQ+FL+   +L KI  ++      TVIE+G G G LT+ LL   A
Sbjct: 20  KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGVLTEELLKR-A 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +VI +E D +    L +    +PN   +I  D LK   E+      P +++ANLPY I 
Sbjct: 79  GQVIAVELDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQDVPYKLVANLPYYIT 137

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +   ++ A   P   ES+ ++ QKEV + I A+      G L++   +    +++  +
Sbjct: 138 SAVFRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTG--DMGLLTLSVRFYGNPSLVSVV 192

Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246
               F+P P+V S ++   IP    +    E    K+ +  FG RRKTL  +L +  G  
Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRI 272
                +LL+ AGI+   RAE LS+E++ ++
Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKL 282


>gi|307298762|ref|ZP_07578565.1| dimethyladenosine transferase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915927|gb|EFN46311.1| dimethyladenosine transferase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 265

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 22/256 (8%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL    + ++I ES       T++EIG G G+LT +LL  G R VI  E D +F
Sbjct: 12  KALGQNFLKSDRVSRRIVESVELNPSTTIVEIGVGSGSLTSILLEKGYR-VIGFEIDTRF 70

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138
               + +  +   R E+  +D LK D      +   +  +AN+PY I +    R++F+  
Sbjct: 71  SEGNRRLEGE---RCELRYEDFLKADLS---TLPDSVTYVANIPYYITSPIIERIMFDG- 123

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P ++   L+ QKE  +R+TA   +  YG L+V     ++   +F +S   F P 
Sbjct: 124 ------PSFDRAVLMVQKEYADRLTATPRTKEYGILTVNVNTFSEVRELFQVSRKEFIPQ 177

Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAG 254
           P+V S VI      NP       +  +K  +  F +RRK L+ +LK +    E LL    
Sbjct: 178 PEVDSMVIELSLLENPPIGEARRDQYRKFVRHCFSQRRKKLKNNLKSIVDLPEELLGSMA 237

Query: 255 IETNLRAENLSIEDFC 270
           I  ++RAE LS++DF 
Sbjct: 238 IGVDVRAEELSVDDFV 253


>gi|134045845|ref|YP_001097331.1| dimethyladenosine transferase [Methanococcus maripaludis C5]
 gi|166221675|sp|A4FY32|RSMA_METM5 RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|132663470|gb|ABO35116.1| dimethyladenosine transferase [Methanococcus maripaludis C5]
          Length = 263

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 14/221 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ FL D N +KK    +   +   V+E+G G G LT+ L  + A+KV VIE D++ 
Sbjct: 5   KKLGQCFLKDKNFVKKAINRAEITNKDVVLELGLGEGALTKELAKI-AKKVYVIELDERL 63

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141
            P   +I+S+  N +EII  DALKVD +   FN     +I+ANLPY I + + F ++  D
Sbjct: 64  KPFADEITSEFEN-VEIIWSDALKVDLKNLGFN-----KIVANLPYQISSPITFKFLDVD 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E+  L++Q E  +R+  + ++  Y RLSV   +      +  + P  F P P V
Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172

Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241
            S ++             E   KK+ +  F  R +T++++L
Sbjct: 173 NSAIVKLTKREPKYFVKDEKFFKKVLKAMFQHRNRTIKRAL 213


>gi|254820388|ref|ZP_05225389.1| dimethyladenosine transferase [Mycobacterium intracellulare ATCC
           13950]
          Length = 310

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 136/288 (47%), Gaps = 21/288 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +    +  P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL  G
Sbjct: 19  IRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGIGRSDHVLEVGPGLGSLTLALLDRG 78

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L D  ++H +    RL ++  D L +  ++      P  ++ANL
Sbjct: 79  A-PVTAVEIDPVLAERLPDTVAEHSHSEIQRLSVLNRDILTLRRDEL--DVQPTAVVANL 135

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+    L + ++     P    +T++ Q EV ER+ A+     YG  SV   +     
Sbjct: 136 PYNVAVPALLHLLAEF---PSIRVVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFGTVR 192

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQE----AFGKRRKTLRQS 240
               +SP VF+P P+V S ++    +  +P P   ++ ++   E    AF +RRKT R +
Sbjct: 193 RCGTVSPTVFWPIPRVYSGLVRIDRYATSPWPTA-DAFRRQVFELVDIAFAQRRKTCRNA 251

Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                G      + L  A I+   R E LSI+DF R+     D    A
Sbjct: 252 FLDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADRSHSA 299


>gi|256084910|ref|XP_002578668.1| dimethyladenosine transferase [Schistosoma mansoni]
 gi|238664049|emb|CAZ34906.1| dimethyladenosine transferase, putative [Schistosoma mansoni]
          Length = 295

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 121/265 (45%), Gaps = 46/265 (17%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           SL+ I+  Y I  +K + QNFLL  + +  + + +G+L G  V+E+G GPG +T+ +L  
Sbjct: 25  SLREIIHVYGIRAQKQLSQNFLLQPSSINGLVKCAGNLRGAYVLEVGPGPGGITRAILQK 84

Query: 69  GARKVIVIEKDQQFFPILKDI---SSQHPNRLEIIQDDALKVDFEKFFNISS-------- 117
             R V V+E D++F P L+++   + +   +++I + D LK + E  F ISS        
Sbjct: 85  APRHVAVVELDRRFIPGLQELRLAALEMGTQMDIYRQDILKFNCEGIFPISSMTGAGAWD 144

Query: 118 -----------------------------PIRIIANLPYNIGTRLLFNWI-----SADTW 143
                                         + +I NLP+NI T L+  W+         W
Sbjct: 145 ESPEVVNSNLVKSTSENQNETALEKVSSPRLCVIGNLPFNISTPLISQWLHDIAERRGIW 204

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
                 LTL FQKEV ER+ A        RLSV++        M DI    F P PKV  
Sbjct: 205 RYGRVPLTLTFQKEVAERLAADVWDEQRSRLSVMSQAYCDVKYMKDIPGTAFVPPPKVDV 264

Query: 204 TVIHFIPHLNP-IPCCLESLKKITQ 227
            V+  IP   P IP     ++K+T+
Sbjct: 265 GVVRLIPLKQPLIPVPYPYVEKLTK 289


>gi|228995432|ref|ZP_04155102.1| Dimethyladenosine transferase [Bacillus mycoides Rock3-17]
 gi|229003046|ref|ZP_04160903.1| Dimethyladenosine transferase [Bacillus mycoides Rock1-4]
 gi|228758204|gb|EEM07392.1| Dimethyladenosine transferase [Bacillus mycoides Rock1-4]
 gi|228764293|gb|EEM13170.1| Dimethyladenosine transferase [Bacillus mycoides Rock3-17]
          Length = 258

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 20/244 (8%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD--- 108
           IEIG G G LT+ L    A+KV+  E DQ+  PIL +  + + N + +I  D LK D   
Sbjct: 17  IEIGPGIGALTEQLAK-RAKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDILKADVHE 74

Query: 109 -FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
            F + F     + ++ANLPY + T +LF  +  +  P       ++ QKEVG+R+ A+  
Sbjct: 75  VFGEQFEKGQDVMVVANLPYYVTTPILFKLLE-EQLP--VRGFVVMMQKEVGDRLAAKPG 131

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKI 225
           +  YG LS+   + T+   +  +   VF P P V S VI  +    PI    +     ++
Sbjct: 132 TKDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRLLKRPKPIVEVKDEKFFFEV 191

Query: 226 TQEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            + +F +RRKTL  +L              + +L + GI+   R E LSIE+F  ++N L
Sbjct: 192 VRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFAALSNAL 251

Query: 277 TDNQ 280
             ++
Sbjct: 252 VSHK 255


>gi|291298533|ref|YP_003509811.1| dimethyladenosine transferase [Stackebrandtia nassauensis DSM
           44728]
 gi|290567753|gb|ADD40718.1| dimethyladenosine transferase [Stackebrandtia nassauensis DSM
           44728]
          Length = 281

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 133/283 (46%), Gaps = 16/283 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT    +  ++ I     + P K +GQNF++D N +++IAE++       VIE+G G G+
Sbjct: 1   MTELLGAADIRRIAEALTVRPAKALGQNFVIDGNTVRRIAEAAKLSPDDIVIEVGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNIS 116
           LT  LL   A++V  +E D +    L       +     +L +   DA+ V  + F    
Sbjct: 61  LTLALLP-KAKRVHAVEIDARLASALTATVNSRAGDDAAKLRVHHADAMTVAEDGFDE-- 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P  ++ANLPYN+   ++ + ++  + P   + L ++ Q EV ER+TA+  +  YG  S+
Sbjct: 118 PPTALVANLPYNVAVPVVLHLLA--SLPSLRQGL-VMVQSEVAERLTAKPGTKIYGIPSL 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
              W   A     +   VF+P P V S ++ F     P P     +      AF +RRKT
Sbjct: 175 KLAWYASARRAGTVPRGVFWPVPNVDSGLVAF-ERREPPPGDRREVFAAVDAAFAQRRKT 233

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           LR +L    G     E +L  A ++   R E L I  F RI  
Sbjct: 234 LRIALSDWAGGPDRAEAILRAADVDPRTRGEALDITTFARIAR 276


>gi|228989249|ref|ZP_04149242.1| Dimethyladenosine transferase [Bacillus pseudomycoides DSM 12442]
 gi|228770459|gb|EEM19030.1| Dimethyladenosine transferase [Bacillus pseudomycoides DSM 12442]
          Length = 254

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 20/244 (8%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD--- 108
           IEIG G G LT+ L    A+KV+  E DQ+  PIL +  + + N + +I  D LK D   
Sbjct: 13  IEIGPGIGALTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDILKADVHE 70

Query: 109 -FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
            F + F     + ++ANLPY + T +LF  +  +  P       ++ QKEVG+R+ A+  
Sbjct: 71  VFGEQFEKGQDVMVVANLPYYVTTPILFKLLE-EQLP--VRGFVVMMQKEVGDRLAAKPG 127

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKI 225
           +  YG LS+   + T+   +  +   VF P P V S VI  +    PI    +     ++
Sbjct: 128 TKDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRLLKRPKPIVEVKDEKFFFEV 187

Query: 226 TQEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            + +F +RRKTL  +L              + +L + GI+   R E LSIE+F  ++N L
Sbjct: 188 VRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFAALSNAL 247

Query: 277 TDNQ 280
             ++
Sbjct: 248 VSHK 251


>gi|148273552|ref|YP_001223113.1| dimethyladenosine transferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831482|emb|CAN02443.1| putative dimethyladenosine transferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 304

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 132/274 (48%), Gaps = 25/274 (9%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P K +GQNF++D N +++I   +    G  V+E+G G G+LT  LL  GA  V+ +E 
Sbjct: 33  VAPTKKLGQNFVIDANTVRRIVRVARVEAGTHVVEVGPGLGSLTLGLLETGA-SVVAVEI 91

Query: 79  DQQF---FPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           D +     PI   ++   P+  L ++ +DAL+V          P  ++ANLPYN+   +L
Sbjct: 92  DGRLAEQLPI--TVALYQPDAELTVVHEDALRVAELP----GDPTALVANLPYNVSVPVL 145

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            + +      P   +  ++ Q EVG RI A   S  YG  SV   W         +S  V
Sbjct: 146 LHLLEHF---PAIRTGVVMVQAEVGHRIAAAPGSKVYGSPSVKAAWYGAWRTAGQVSRQV 202

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLK----KITQEAFGKRRKTLRQSLKR-LGGEN- 248
           F+P P V S ++ F  H  P     ESL+    KI   AF +RRK LRQ+L   LGG   
Sbjct: 203 FWPVPNVDSVLVAFERHAEPFAS--ESLRVRTFKIVDAAFQQRRKMLRQALAELLGGSEA 260

Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              LL   G+    R E LS+ D+ R+     D 
Sbjct: 261 ASALLEAGGVAPTSRGEELSVHDYLRVARAWADR 294


>gi|291287761|ref|YP_003504577.1| dimethyladenosine transferase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884921|gb|ADD68621.1| dimethyladenosine transferase [Denitrovibrio acetiphilus DSM 12809]
          Length = 267

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 123/257 (47%), Gaps = 17/257 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+FL     +  IAES  S +   ++EIG G G LT  +L  GA  V  +E D+ 
Sbjct: 16  KKKFGQHFLTSKQFIDMIAESLASAECRQIVEIGPGCGVLTHAMLEKGA-SVTAVEIDE- 73

Query: 82  FFPILKDISSQHPNRLEIIQD-DALKVDFEKFFNISSP---IRIIANLPYNIGTRLLFNW 137
                 D++   P  L I +    +  DF        P   I    NLPYN+   +L + 
Sbjct: 74  ------DLAEFLPRYLFIYKGFKVINADFMLITEDQLPDGKIAFAGNLPYNVSVDILMHC 127

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    E +T +FQKEV +RI A+ N+  Y  LSV+T +  +   + DIS   F+P
Sbjct: 128 VK---FFHKIEKMTFMFQKEVADRINAKPNNKEYTSLSVITSYFFEKKKLKDISGGQFWP 184

Query: 198 SPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGE-NLLHQAGI 255
           + KV STV+ F P         E       + +F  +RKTL  +LK        + +AG+
Sbjct: 185 NTKVRSTVLEFYPKERHFSAEKELRFLSFVKNSFMMKRKTLHNNLKSYPNHLEAMEKAGL 244

Query: 256 ETNLRAENLSIEDFCRI 272
             N+R E + ++DF R+
Sbjct: 245 AANIRGEQMELKDFIRL 261


>gi|71894000|ref|YP_279446.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae J]
          Length = 250

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 125/260 (48%), Gaps = 17/260 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           MGQNFL D  I +KI E+   L    +IEIG G G LT  LL   A+ V   E D+   P
Sbjct: 1   MGQNFLKDRKIAEKIVENI-DLKNKEIIEIGCGTGFLTNFLLE-KAKFVTCYEIDRNLIP 58

Query: 85  ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           IL     +  N+ L II +D L  + E          IIANLPY I +++LF   +   +
Sbjct: 59  IL---EKKFKNKNLRIINEDFLLAELE----FKEKKTIIANLPYYITSKILFKIFA--NF 109

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
             F + + L+ Q EV +RI A+  +P Y +LS+ + +      +F + P  FFP PK+ S
Sbjct: 110 EKF-DKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAHVKKLFVVGPDSFFPKPKINS 168

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQAGIETNL 259
            V+ F    N      E     T++ F  +RKTL  +    L +   E + +      N+
Sbjct: 169 AVVFFDLRTNLDAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFAQNI 228

Query: 260 RAENLSIEDFCRITNILTDN 279
           R + L +  + R+ +   +N
Sbjct: 229 RPQQLDLVTYIRLADFYFNN 248


>gi|302865247|ref|YP_003833884.1| dimethyladenosine transferase [Micromonospora aurantiaca ATCC
           27029]
 gi|302568106|gb|ADL44308.1| dimethyladenosine transferase [Micromonospora aurantiaca ATCC
           27029]
          Length = 289

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 132/270 (48%), Gaps = 15/270 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N +++I  ++G       +E+G G G+LT  LL + 
Sbjct: 10  IRELAARLGVTPTKKLGQNFVHDPNTVRRIVTTAGLTPDDVALEVGPGLGSLTLALLPVA 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L + +++       RL +   DAL+V  +      +P  ++ANL
Sbjct: 70  AH-VHAVELDPALAAALPETAARFAGTAAERLTVHPADALRVTADDLAG-PAPTALVANL 127

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++    P     L ++ QKEV +R+ A   S  YG  SV   W  ++ 
Sbjct: 128 PYNVAVPVVLHLLA--ELPTLRHGL-VMVQKEVADRLVAGPGSKVYGIPSVKLAWYARSR 184

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLR-----Q 239
               + P+VF+P P V S ++ F     P P    +++  +   AF +RRKTLR      
Sbjct: 185 AAGKVPPNVFWPVPNVDSGLVAFTRREPPRPDVPRKAVFAVVDAAFAQRRKTLRAALAGW 244

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDF 269
           +         L  AG++ + R E+L++E F
Sbjct: 245 AGGADRAAAALTAAGVDPSARGESLTVEQF 274


>gi|66475300|ref|XP_627466.1| Dim1p-like ERMB/KSGA methylase [Cryptosporidium parvum Iowa II]
 gi|32398681|emb|CAD98641.1| dimethyladenosine transferase, probable [Cryptosporidium parvum]
 gi|46228931|gb|EAK89780.1| Dim1p-like ERMB/KSGA methylase [Cryptosporidium parvum Iowa II]
 gi|323508725|dbj|BAJ77256.1| cgd6_930 [Cryptosporidium parvum]
 gi|323509991|dbj|BAJ77888.1| cgd6_930 [Cryptosporidium parvum]
          Length = 385

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 117/249 (46%), Gaps = 11/249 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N SH+     S   +I  K  GQ+ L +  IL KI  ++      TV+EIG G GNLT  
Sbjct: 42  NSSHNKGGGSSFVNVILDKKKGQHLLKNTGILDKIILAADIKPTDTVLEIGPGTGNLTMR 101

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           LL L ARKV+  + D +    +K  S     N LE+ + DAL+  F  F          A
Sbjct: 102 LLPL-ARKVVAFDIDPRMVAEVKKRSVNSGFNNLEVREGDALRSSFGDF------DVCTA 154

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I +  +F  +S       +    L+FQ+E   R+ A+    HY RLSV T   +K
Sbjct: 155 NLPYQISSPFVFKLLSLQNK---YRCAVLMFQEEFALRLLAEPGEKHYCRLSVNTKLFSK 211

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            T +  ++P  F P PKV S V+ F P   P+         + +  F +++KT+R +   
Sbjct: 212 VTRVCKVAPGSFNPPPKVNSMVVKFEPKKIPVSVNFREWDGLMRICFSRKKKTIRANFNN 271

Query: 244 LGGENLLHQ 252
               N+L  
Sbjct: 272 SSVLNILEN 280


>gi|119511388|ref|ZP_01630500.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414]
 gi|119463933|gb|EAW44858.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414]
          Length = 275

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 32/284 (11%)

Query: 19  IIPKKYMGQNFLLD---LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           I P+K   Q++L     L+ + K AE   S D   V+EIG G G LT+ LL L  R ++ 
Sbjct: 2   IKPRKSFAQHWLKSEKALDAIIKAAECHQSDD--RVLEIGPGTGILTRRLLPL-VRSLVA 58

Query: 76  IEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNI 129
           +E D   F + K ++ Q        ++Q D L +D       F N   P +++AN+PYNI
Sbjct: 59  VEID---FDLCKQLAKQLGKKENFLLLQGDFLTLDLPSHLAPFPNFQQPNKVVANIPYNI 115

Query: 130 GTRLLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
              ++   +   A+  P  ++S+ LL QKEV +R+ A   S  +G LSV   +      +
Sbjct: 116 TGPIIEKLLGTIANPNPEPFDSIVLLVQKEVADRLYAHPGSRTFGALSVRVQYLADCEFI 175

Query: 188 FDISPHVFFPSPKVTSTVIHF------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
             +    F+P PKV S V+         P LNP        + + +  F  +RK LR +L
Sbjct: 176 CTVPAGAFYPPPKVDSAVVRLRPRTIETPALNP-----RKFENLVKLGFSAKRKMLRNNL 230

Query: 242 KRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           + +   +    LL Q  I   +RAE+LS++ + R+ N LT N +
Sbjct: 231 QSVVERDRLTHLLEQLEINPQVRAEDLSVQQWVRLANQLTVNTE 274


>gi|297200276|ref|ZP_06917673.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083]
 gi|197709390|gb|EDY53424.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083]
          Length = 296

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 135/276 (48%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N ++KI  ++G  D   V+E+G G G+LT  LL   
Sbjct: 15  IRELAAALGVRPTKQRGQNFVIDANTVRKIVRTAGVRDDDVVVEVGPGLGSLTLALLET- 73

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPNRLE---IIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V  +E D      L   I+++ P+R +   ++  DA+ V         +P  ++ANL
Sbjct: 74  ADRVTAVEIDDVLASALPATIAARLPDRADRFALVHSDAMHV---TELPGPAPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  DT+P    +L ++ Q EV +R+ A   S  YG  SV   W  +  
Sbjct: 131 PYNVAVPVLLHML--DTFPSIERTL-VMVQAEVADRLAAPPGSKVYGVPSVKANWYAEVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238
               I  +VF+P+P V S ++       PI       +   +   AF +RRKTLR     
Sbjct: 188 RAGSIGRNVFWPAPNVDSGLVALTRRTEPIRTTASKREVFAVVDAAFAQRRKTLRAALAG 247

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +      E  L  AG+    R E+L++E+F RI  
Sbjct: 248 WAGSAAAAETALVAAGVSPQARGESLTVEEFARIAE 283


>gi|307353999|ref|YP_003895050.1| dimethyladenosine transferase [Methanoplanus petrolearius DSM
           11571]
 gi|307157232|gb|ADN36612.1| dimethyladenosine transferase [Methanoplanus petrolearius DSM
           11571]
          Length = 257

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 136/273 (49%), Gaps = 45/273 (16%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL D + ++KIA  S   D  TV+EIG G G LT+ LL  GA KVI IE D +   IL
Sbjct: 7   QHFLTDPDAIRKIAHFSDIKDQ-TVLEIGPGKGALTKELLERGA-KVIAIEIDPKMIEIL 64

Query: 87  -----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                 +I S    RL ++ +DA++ D+  F +I     +IANLPY+  +++ F  +   
Sbjct: 65  GSRFADEIDS---GRLNLLNEDAVRCDYPDF-DI-----VIANLPYSASSKITFRLLEHG 115

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                ++   L++QKE   R+ A   + + GRLSV+     K   + ++ P  F P P V
Sbjct: 116 -----FKEAVLMYQKEFALRMMALPGTSNCGRLSVMVQTYAKVMPLLNLPPEAFSPPPAV 170

Query: 202 TSTVIHFI-------PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            S V+          P  +P     E    + +E F  RRKTL++SLK     +++ +  
Sbjct: 171 DSMVVRITMKEELTYPVDDP-----EFYSILVRELFSHRRKTLKKSLK--SSRSVIGEKR 223

Query: 255 IETNL----------RAENLSIEDFCRITNILT 277
            E  +          RAE LS++DF  I+NI T
Sbjct: 224 YERIVSMLPDEMLKKRAEELSLKDFSNISNIAT 256


>gi|330836977|ref|YP_004411618.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta
           coccoides DSM 17374]
 gi|329748880|gb|AEC02236.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta
           coccoides DSM 17374]
          Length = 291

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 129/273 (47%), Gaps = 15/273 (5%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           +++  +L    +   K  GQNFLL   I K+I ++     G+T+ EIG G G LT +LL 
Sbjct: 11  NAINNLLQEESLAMNKQFGQNFLLPQAIRKRIVDALEPSAGLTIWEIGPGLGALTVLLLE 70

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
               ++   E D+ F  IL++ +        +++ D LK     + +   P RI  NLPY
Sbjct: 71  KKC-QLTAFEIDKGFCSILREKAFADETGFRLVEGDFLKTWEAVYGSGGVPHRICGNLPY 129

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+G+  +   +     P   + +    QKEV ER+T++    +   L++L     +  ++
Sbjct: 130 NVGSVCIARLLERQCLP---DIMVFTVQKEVAERLTSRDGDKNRSTLTLLADIDYETRLL 186

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLK-KITQEAFGKRRKTLR------- 238
           F I    F+PSP VTS  +       P +   L  +   + ++AF  RRKT++       
Sbjct: 187 FTIGGGAFYPSPDVTSAAVGMYRRATPLVDAALRPVYLSLVKDAFSHRRKTMKNNLLQGE 246

Query: 239 --QSLKRLGGENLLHQAGIETNLRAENLSIEDF 269
              +L + G + +L  +G+    RAE LS E+ 
Sbjct: 247 IGNTLGKDGVDAILANSGVNPQSRAEALSFEEL 279


>gi|312130023|ref|YP_003997363.1| dimethyladenosine transferase [Leadbetterella byssophila DSM 17132]
 gi|311906569|gb|ADQ17010.1| dimethyladenosine transferase [Leadbetterella byssophila DSM 17132]
          Length = 255

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 125/264 (47%), Gaps = 12/264 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK++GQ+FL DL+  K+I E         V+EIG G G LTQ L       + ++E
Sbjct: 3   KVKAKKHLGQHFLKDLSAAKRITELYQGPK--KVLEIGPGMGVLTQYLRERTDLDLYLVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D++    L+        +L     D L+++  +  N      II N PYNI +++ F  
Sbjct: 61  IDKESVAYLQHQYGYTDEKL--FDADFLQMNLSERLNTEGDFGIIGNFPYNISSQIFFKV 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEVG R+ ++  +  YG LSVL          F + P  F P
Sbjct: 119 LD---YRDQVKEVVGMVQKEVGVRLASKPGNKDYGILSVLLQAFYDIEYSFTVPPGAFDP 175

Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI  + +++  + C  +  K + + AF +RRK L  +LK +  +     A   
Sbjct: 176 PPKVDSGVIRLVRNMDKKLDCDYKKFKLVVKTAFNQRRKMLSNALKPVSAQQEFPYA--- 232

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
            N RAE L    F  IT +L  NQ
Sbjct: 233 -NKRAEQLDYLQFAEITRVLFPNQ 255


>gi|150400809|ref|YP_001324575.1| dimethyladenosine transferase [Methanococcus aeolicus Nankai-3]
 gi|166221674|sp|A6UTZ1|RSMA_META3 RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|150013512|gb|ABR55963.1| dimethyladenosine transferase [Methanococcus aeolicus Nankai-3]
          Length = 271

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 104/194 (53%), Gaps = 13/194 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ FL D NI+KK   ++       V+EIG G G LT+ L     +KVIVIE D++ 
Sbjct: 5   KKLGQCFLKDKNIVKKAINAANINKNDIVLEIGLGKGILTKELAK-QCKKVIVIELDKKL 63

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141
               +DI  ++PN +EII +DALKV+ ++  FN     +++ANLPY I + + F  +  D
Sbjct: 64  EIFWEDIIKEYPN-VEIIWNDALKVNLKELGFN-----KVVANLPYQISSPITFKLLDCD 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E   L++Q E  +R+ A   +  Y RLSV   +R     +  +SP  F P PKV
Sbjct: 118 -----FEVAVLMYQYEFAKRMGAPSGTKEYSRLSVSVQYRAVVDYVCKVSPSAFSPKPKV 172

Query: 202 TSTVIHFIPHLNPI 215
            S ++       PI
Sbjct: 173 DSAIVKITKKNEPI 186


>gi|116624617|ref|YP_826773.1| dimethyladenosine transferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227779|gb|ABJ86488.1| dimethyladenosine transferase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 247

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 125/257 (48%), Gaps = 20/257 (7%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +P+K +GQ+FL + ++L +IA +        VIEIG G G LT+ LL    R VI IE D
Sbjct: 1   MPQK-LGQHFLSNGSVLDRIALAVCPEGEELVIEIGPGKGALTEKLLQRSGR-VIAIELD 58

Query: 80  QQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
               P+L +   Q     +RL++I  D L  D  ++     P+ I  NLPY I + +L  
Sbjct: 59  ----PVLVEYLRQKFEGESRLQVIHADVLHTDLAQW----GPVPIAGNLPYYITSPILER 110

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            + A            L QKEV  R+ A      YG L++ T       ++F++ P  F 
Sbjct: 111 SVRAGA-----PRTVFLIQKEVAHRLVAHPGQRDYGYLTLQTALFADTKLLFEVKPGAFK 165

Query: 197 PSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S V+   PH         +   K    +F ++RKTLR +L  + G++L+  A  
Sbjct: 166 PPPKVDSAVVLLTPHGRDYGITDRDKFLKFLSHSFRQKRKTLRNNLFAVYGKDLI-DAWP 224

Query: 256 ETNLRAENLSIEDFCRI 272
           E  LRAE + +E F  +
Sbjct: 225 EAGLRAEQIPMEKFVEM 241


>gi|308234963|ref|ZP_07665700.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14018]
 gi|311113998|ref|YP_003985219.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14019]
 gi|310945492|gb|ADP38196.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14019]
          Length = 296

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 139/277 (50%), Gaps = 24/277 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +KKI  +S       V+E+G G G+LT  +L
Sbjct: 21  AADIRRIAAEEGITPTKKFGQNFVIDPGTVKKIVTASKINSNDFVMEVGPGLGSLTLAIL 80

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLE---IIQDDALKVDFEKFFNISSP- 118
             GA  +  +E D    P+ K + S      PN LE   +I  DAL+++ +   N+++  
Sbjct: 81  QAGA-NLTAVEIDP---PLAKRLPSTVKEFMPNALERFNVILKDALELNAQDVPNLANAQ 136

Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRL 174
              ++ANLPYN+ T ++   +        + +LT   ++ QKEV +R+ AQ  +  YG  
Sbjct: 137 HFTLVANLPYNVATPIILTLLEK------FNNLTSFLVMVQKEVADRLCAQPGTKTYGTP 190

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGK 232
           SV   W  ++     I  +VF+P+P V S +++F  +  +       E + KI   AF +
Sbjct: 191 SVKLAWYGESQKAGLIGRNVFWPAPNVDSALVYFERNNEIREDEQEREKVFKIIDAAFQQ 250

Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269
           RRKTL  +LK +        AGI+   R E L+  +F
Sbjct: 251 RRKTLHSALKGIISNESYDIAGIDPTRRGETLTCAEF 287


>gi|221211273|ref|ZP_03584252.1| dimethyladenosine transferase [Burkholderia multivorans CGD1]
 gi|221168634|gb|EEE01102.1| dimethyladenosine transferase [Burkholderia multivorans CGD1]
          Length = 305

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 131/280 (46%), Gaps = 29/280 (10%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+     H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT+ L+ 
Sbjct: 29  QSMSNSRQHQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIA 88

Query: 68  LGARK---VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----I 119
             A     +  +E D+     LK    +    LE+   DAL  DF    ++++P     +
Sbjct: 89  RLATPETPLHAVELDRDLIARLK---QRFGALLELHAGDALAFDFR---SLAAPGDAPSL 142

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RI+ NLPYNI + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  
Sbjct: 143 RIVGNLPYNISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQ 199

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGK 232
           +R     + D+ P  F P PKV S ++  IP+       ++P+      L +I   AF +
Sbjct: 200 YRYVMDKLIDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPV-----LLGEIVTAAFSQ 254

Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272
           RRK LR +L            G +   RAE++S+ ++  +
Sbjct: 255 RRKMLRNTLGDYRETIDFDALGFDLARRAEDVSVAEYVGV 294


>gi|330752527|emb|CBL87475.1| dimethyladenosine transferase [uncultured Sphingobacteria
           bacterium]
          Length = 260

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 134/262 (51%), Gaps = 22/262 (8%)

Query: 23  KYMGQNFLLDLNILKKI-AESSGSLDGITV---IEIGAGPGNLTQMLLTLGARKVIVIEK 78
           K  GQ+FL+D  +L+ I A       G++V   IEIG G G LTQ  +         +E 
Sbjct: 9   KAFGQHFLVDQGVLESIVAAIQKEEQGVSVDHLIEIGPGDGALTQFFV--DQPNFSALEI 66

Query: 79  DQQFFPILKDISSQHPNRLEIIQ-DDALKVDF-EKFFNISSPIRIIANLPYNIGTRLLFN 136
           D ++    + +  ++P   E I   D L+ +  EKF     P+ +  N PYNI ++++F 
Sbjct: 67  DSRWH---RRLVERYPASEEKIHLADVLRTNLLEKF---EPPMAVFGNFPYNISSQIVFK 120

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P W  +  +FQKEV  R+ A+  S  YG  SVLT    +  ++FDI+   F 
Sbjct: 121 ILDNREHVP-W--VVGMFQKEVAYRLAAKHGSKVYGVTSVLTQAYYEVDILFDIASSSFD 177

Query: 197 PSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S+V+    +   +P C   +L+ + + AFG+RRK LR SLK L   ++ H+  +
Sbjct: 178 PPPKVESSVLVMRRYRTDMPNCTYGALRHVVKTAFGQRRKMLRNSLKFL---DIAHREEL 234

Query: 256 ETNLRAENLSIEDFCRITNILT 277
            T +R E L +E F  +  + +
Sbjct: 235 LT-MRPEQLPLETFIELAELYS 255


>gi|269219262|ref|ZP_06163116.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211409|gb|EEZ77749.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 350

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 143/341 (41%), Gaps = 82/341 (24%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M   SH ++ + S   I P K +GQNF+ D   +++I   +G   G  V+E+G G G+LT
Sbjct: 1   MLGASH-IRELASTLGIRPTKTLGQNFVHDAGTVRRIVREAGVRPGDVVLEVGPGLGSLT 59

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDAL------------- 105
             LL  GA  V  +E D      L+  ++++ P    RL +   DA+             
Sbjct: 60  LALLEAGA-AVCAVEIDPVLAGALESTVAARMPEAVERLAVANLDAMDVKAPSNLPIPRL 118

Query: 106 ------------------------KVDF--------------EKFF----NISSPIRIIA 123
                                    VDF              E+F     N++ P R++A
Sbjct: 119 LRSEEGRAHGRAESAPETAELEPGSVDFAGETARTGRLPEKPERFVASTRNLAEPSRLVA 178

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +    + A    P  ++ T++ Q EV +R+ A   S  YG  S    W  +
Sbjct: 179 NLPYNVAVPIFLGLLEAL---PSIQAATVMVQAEVADRLAASPGSRTYGVPSAKASWYGE 235

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPC-----------CLESLKKITQEAF 230
           A     IS +VF+P P V S +++F  H  L  +P              E +  +   AF
Sbjct: 236 AARGAKISRNVFWPIPNVDSALVNFKRHGALPWLPADVAGRGAFADVAREDVFAVIDAAF 295

Query: 231 GKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSI 266
            +RRKTLR +L    G     E+LL  AGI+   R E L I
Sbjct: 296 AQRRKTLRAALATWAGSAARAEDLLVFAGIDPKARGEQLGI 336


>gi|119485101|ref|ZP_01619486.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106]
 gi|119457329|gb|EAW38454.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106]
          Length = 273

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 13/268 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L +I  ++       ++EIG G G LT+ LLTL A+ V+ +E D+
Sbjct: 4   PRKQFAQHWLRSPTALNQIVNAAQLSTDDHLLEIGPGTGVLTERLLTL-AQTVLAVEIDR 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLLFN 136
                L     +  N L ++Q D L +  E +     N  +P +++AN+PYNI   +L  
Sbjct: 63  DLCKKLVPKFGKRDNFL-LLQGDILTLRLEDYLQDFPNFQNPNKVVANIPYNITGPILEK 121

Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            +   A   P  ++ + LL QKEV +R+ A   S  +G LSV   +  K   + D+    
Sbjct: 122 LLGNIAQPNPQPYDLMVLLVQKEVAQRLCAGPGSRTFGALSVRVQYLAKCEFICDVPSKA 181

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249
           F+P PKV S V+   P     P    + L+   +  F  +RK LR +L+ +   +    +
Sbjct: 182 FYPPPKVDSAVVRLRPRCIEYPAESPKHLEMAVKLGFASKRKMLRNNLQSVIDRDQLTQI 241

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           L Q  +    RAE+LS+E +  ++N L 
Sbjct: 242 LEQLEVNPQARAEDLSVEQWVSLSNRLV 269


>gi|108803734|ref|YP_643671.1| dimethyladenosine transferase [Rubrobacter xylanophilus DSM 9941]
 gi|118600896|sp|Q1AXL9|RSMA_RUBXD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|108764977|gb|ABG03859.1| dimethyladenosine transferase [Rubrobacter xylanophilus DSM 9941]
          Length = 262

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 119/253 (47%), Gaps = 13/253 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ+FL D N  + +A  +G  +   V+EIG G G LT  L    A  V  +E D 
Sbjct: 12  PKKRLGQHFLKDANTARIVA--AGLTERDVVLEIGPGRGFLTAFLAER-AGLVHAVEIDP 68

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              P L+       N + I + DAL+ D+        P R+ ANLPYNI + L+   +  
Sbjct: 69  DVLPELRRAVGARGN-VRIHEADALRFDYGALS--PPPNRLAANLPYNIASPLVLRLLEE 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P  E +  + Q EV  R+TA+  S  YG  +VL    ++  +   +SP VF P P+
Sbjct: 126 V---PSLERMRFMVQLEVALRMTARPGSKDYGAYAVLIQLLSRPEVAHRVSPRVFDPPPR 182

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENLLHQAGIET 257
           V S V+      +  P     +K++   AF  RRK L  +L    R   E  L   G   
Sbjct: 183 VRSAVVELERRRD-APEDYRGVKELVAAAFRSRRKRLPNNLPGPLRERAEEALAGLGHGP 241

Query: 258 NLRAENLSIEDFC 270
           + RAE LS EDF 
Sbjct: 242 DARAEELSPEDFV 254


>gi|42573814|ref|NP_975003.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis
           thaliana]
 gi|10177517|dbj|BAB10912.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana]
 gi|332010821|gb|AED98204.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
           thaliana]
          Length = 380

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 104/217 (47%), Gaps = 12/217 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL  I  SS      TV+EIG G GNLT  LL   A+ V+ +E D++ 
Sbjct: 65  KSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLE-AAQNVVAVELDKRM 123

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL+   S H   ++L IIQ D LK DF  F        ++AN+PYNI + L+   +  
Sbjct: 124 VEILRKRVSDHGFADKLTIIQKDVLKTDFPHF------DLVVANIPYNISSPLVAKLVYG 177

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 + S TLL QKE   R+ A      + RL+V          + D+S   F P PK
Sbjct: 178 SNT---FRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVKFVMDVSKREFVPPPK 234

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           V S+VI   P        ++     T+  FGK+ KTL
Sbjct: 235 VDSSVIRITPKEIIPDVNVQEWLAFTRTCFGKKNKTL 271


>gi|116754303|ref|YP_843421.1| dimethyladenosine transferase [Methanosaeta thermophila PT]
 gi|116665754|gb|ABK14781.1| dimethyladenosine transferase [Methanosaeta thermophila PT]
          Length = 249

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 133/257 (51%), Gaps = 18/257 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+FL D  I ++IA  +       ++EIG G G+LT+ L     R V  IE D +   +
Sbjct: 4   GQHFLTDRGIAERIAGYAEISPSDRILEIGPGKGSLTEFLAARAGR-VYAIEADPE---L 59

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            + +    PN +E+IQ DAL+VD  ++       ++++NLPY+I T++    +      P
Sbjct: 60  ARYVEESFPN-VEVIQGDALRVDLPEYN------KVVSNLPYHISTKITLRLLRN----P 108

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
           F + + L++Q+E  ER+ A   S  YGRLSV   +     ++  +    F P P V+S+V
Sbjct: 109 F-DLMVLMYQREFVERMLASPGSREYGRLSVNVSYYADVEVLETVPRSAFRPMPHVSSSV 167

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGIETNLRAEN 263
           +   P  +           I+++ F KRRK ++ +L  +G   + +L       + R E+
Sbjct: 168 VRLRPRRDRELVDELIFSSISRDLFTKRRKKVKNALASIGVADDVMLDLDPSILDARPED 227

Query: 264 LSIEDFCRITNILTDNQ 280
           L +++F +I  ++++++
Sbjct: 228 LGVDEFVQIARVVSEHR 244


>gi|219851214|ref|YP_002465646.1| dimethyladenosine transferase [Methanosphaerula palustris E1-9c]
 gi|219545473|gb|ACL15923.1| dimethyladenosine transferase [Methanosphaerula palustris E1-9c]
          Length = 262

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 130/270 (48%), Gaps = 28/270 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D   + +I E +G +DG +V+EIG G G LT+ LL  GA  V  IE D+     L
Sbjct: 7   QHFLVDQRAIDRIIECAG-VDGKSVLEIGPGEGVLTRALLDAGA-TVSAIEVDRTLIAHL 64

Query: 87  KD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            D  +       L +I+ DA +  F  F  +      +ANLPY+I + + F  +  D   
Sbjct: 65  TDRFVDEIRSGFLTLIEGDAARCPFPPFEVM------VANLPYSISSPITFRLLDTD--- 115

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             + S  L++Q+E   R+ A   +   GRLSV+          F +SP  F P P V S 
Sbjct: 116 --FSSAVLMYQREFAARMAAPVGTSGCGRLSVMVQTYALVEECFTLSPFSFNPPPAVDSM 173

Query: 205 VIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQ---AGIETNL- 259
           V+   P+    P    S+   + +  F +RRKT+R  LK  GG  +  +   AG+   L 
Sbjct: 174 VVRIRPYGPIFPITDRSVYAAVVRILFSQRRKTVRNGLK--GGIGIYGKPAIAGVIEALP 231

Query: 260 ------RAENLSIEDFCRITNILTDNQDIA 283
                 R + L +ED+  I N++++   ++
Sbjct: 232 EEILGARPQTLYLEDYATIANLVSERSGLS 261


>gi|221200091|ref|ZP_03573134.1| dimethyladenosine transferase [Burkholderia multivorans CGD2M]
 gi|221206756|ref|ZP_03579768.1| dimethyladenosine transferase [Burkholderia multivorans CGD2]
 gi|221173411|gb|EEE05846.1| dimethyladenosine transferase [Burkholderia multivorans CGD2]
 gi|221180330|gb|EEE12734.1| dimethyladenosine transferase [Burkholderia multivorans CGD2M]
          Length = 275

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 129/272 (47%), Gaps = 29/272 (10%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--- 72
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT+ L+   A     
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIARLATPETP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-----IRIIANLPY 127
           +  +E D+     LK    +    LE+   DAL  DF    ++++P     +RI+ NLPY
Sbjct: 67  LHAVELDRDLIARLK---QRFGALLELHAGDALAFDFR---SLAAPGDAPSLRIVGNLPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     +
Sbjct: 121 NISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKL 177

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
            D+ P  F P PKV S ++  IP+       ++P+      L +I   AF +RRK LR +
Sbjct: 178 IDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPV-----LLGEIVTAAFSQRRKMLRNT 232

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272
           L            G +   RAE++S+ ++  +
Sbjct: 233 LGDYRETIDFDALGFDLARRAEDVSVAEYVGV 264


>gi|83719203|ref|YP_441135.1| dimethyladenosine transferase [Burkholderia thailandensis E264]
 gi|167579886|ref|ZP_02372760.1| dimethyladenosine transferase [Burkholderia thailandensis TXDOH]
 gi|167617960|ref|ZP_02386591.1| dimethyladenosine transferase [Burkholderia thailandensis Bt4]
 gi|257140203|ref|ZP_05588465.1| dimethyladenosine transferase [Burkholderia thailandensis E264]
 gi|119365011|sp|Q2T114|RSMA_BURTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83653028|gb|ABC37091.1| dimethyladenosine transferase [Burkholderia thailandensis E264]
          Length = 275

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 19/264 (7%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---RK 72
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  ++   A     
Sbjct: 7   HQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPDSP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIG 130
           +  +E D+     LK    +    LE+ + DAL  DF           +RII NLPYNI 
Sbjct: 67  LHAVELDRDLIGRLK---QRFGELLELHEGDALAFDFGSLALPGEKPSLRIIGNLPYNIS 123

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     + D+
Sbjct: 124 SPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLIDV 180

Query: 191 SPHVFFPSPKVTSTVIHFIPHL-NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN 248
            P  F P PKV S ++  IPH  + +P    + L ++   AF +RRK LR +   LGG  
Sbjct: 181 PPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNT---LGGYR 237

Query: 249 LL---HQAGIETNLRAENLSIEDF 269
            L      G +   RAE++ ++++
Sbjct: 238 DLVDFDALGFDLARRAEDVGVDEY 261


>gi|86152390|ref|ZP_01070600.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86154129|ref|ZP_01072328.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|157415933|ref|YP_001483189.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|315125095|ref|YP_004067099.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840687|gb|EAQ57939.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85842369|gb|EAQ59585.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|157386897|gb|ABV53212.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748571|gb|ADN91841.1| Dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315018817|gb|ADT66910.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931321|gb|EFV10290.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 266

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 130/263 (49%), Gaps = 16/263 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   K   I+ D  
Sbjct: 5   KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138
             PILK    +    LE  + + +  D  + FN S    P  ++ANLPY + + ++   +
Sbjct: 62  LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      L ++ Q+E+ E+  A++ +  +  L VL+    +  M+FD+ P  F P 
Sbjct: 119 EDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKMLFDVDPQCFNPP 174

Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAGI 255
           PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    + L  L   G+
Sbjct: 175 PKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTLGL 234

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           + N+R   + ++ + +I + L D
Sbjct: 235 KENIRPHEICVDSYLKIYDKLKD 257


>gi|126657589|ref|ZP_01728744.1| dimethyladenosine transferase [Cyanothece sp. CCY0110]
 gi|126621045|gb|EAZ91759.1| dimethyladenosine transferase [Cyanothece sp. CCY0110]
          Length = 270

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 138/275 (50%), Gaps = 33/275 (12%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L++I +++   +   ++EIG G G LT+ LL L  + +I +E D 
Sbjct: 4   PRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPL-VQSLIAVELDW 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVD-------FEKFFNISSPIRIIANLPYNIGT-- 131
                L        N L ++Q D LK+D       F KF  I+   +++AN+PYNI +  
Sbjct: 63  DLCKKLVKSLGNEDNFL-LLQGDILKLDIATEAEQFPKFLPIN---KVVANIPYNITSPI 118

Query: 132 --RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
             +LL N  S +  PP+ + + LL QKEV +RI A   S +YG LS+   +      + D
Sbjct: 119 LEKLLGNIASPEN-PPY-DLIVLLIQKEVAQRIVASPGSKNYGALSIKMQYLADCNYICD 176

Query: 190 ISPHVFFPSPKVTSTVIHFIPH------LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           +    F+P PKV S VI F P       +NP     + L+ +    F  RRK LR +L+ 
Sbjct: 177 VPKKSFYPPPKVDSAVITFRPRPLLNSAINP-----KQLETLINLGFSSRRKMLRNNLQS 231

Query: 244 LGGENLLHQAGIETNL----RAENLSIEDFCRITN 274
           L   +LL +   E +L    RAENL +  +  ++N
Sbjct: 232 LIDRDLLTKFLTEIDLNEQVRAENLDLNQWIALSN 266


>gi|167751829|ref|ZP_02423956.1| hypothetical protein ALIPUT_00071 [Alistipes putredinis DSM 17216]
 gi|167660070|gb|EDS04200.1| hypothetical protein ALIPUT_00071 [Alistipes putredinis DSM 17216]
          Length = 349

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 128/271 (47%), Gaps = 22/271 (8%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           ++  KK +GQ+FL+DLNI +KI +S G   S     V+E+G G G LT+ LL        
Sbjct: 87  EVRAKKALGQHFLVDLNIARKICDSLGGGTSEKPCPVLEVGCGMGVLTRFLLKRTDVVTY 146

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
             E D +    L     +   RL  ++ D LK+D    F     +R+I N PYNI +++ 
Sbjct: 147 GAEIDSESVAYLHAHYPEFTPRL--MEGDFLKMDLRTLF--PEGLRVIGNFPYNISSQIF 202

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +      P       + QKEV  R+     S  YG LSVL         +F ++  V
Sbjct: 203 FKVLENRDLIP---ECVGMIQKEVAVRLAEPPGSKEYGILSVLLQAWYDIEYLFTVNETV 259

Query: 195 FFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           F P PKV S V+    H N +    C      ++ + +FG+RRK LR SL+   G+    
Sbjct: 260 FNPPPKVKSAVVRL--HRNGVDRLDCDERLFVRVVKASFGQRRKMLRNSLRAAFGDF--- 314

Query: 252 QAGIETNL---RAENLSIEDFCRITNILTDN 279
             G+E      RAE LS+ DF  +T  + ++
Sbjct: 315 -GGVEHPFFTQRAEQLSVADFVELTRWVEEH 344


>gi|300681318|emb|CAZ96033.1| dimethyladenosine transferase [Sorghum bicolor]
          Length = 343

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 140/286 (48%), Gaps = 22/286 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++++ S  + +P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL  
Sbjct: 61  TIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQA 120

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPI 119
           GA  V  +EKD+    ++KD       +L++I++D  K            EK+       
Sbjct: 121 GA-TVFAVEKDKHMATLVKDRFGS-TEQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLA 178

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLT 178
           ++++NLP+N+ + ++   +        +  + L+ Q E   R+  A    P Y  ++V  
Sbjct: 179 KVVSNLPFNVSSEVVKLLLPMGD---VFSVVVLMLQDETAVRLADASIQIPEYRPINVFV 235

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRK 235
            + +K    F +    FFP PKV   VI F + +    P     +S   +   AF  +RK
Sbjct: 236 NFYSKPEYKFRVDRENFFPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRK 295

Query: 236 TLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            LR+SL+ L      E  L   G+    R  +L ++DF R+ N LT
Sbjct: 296 MLRKSLQHLCSSSEIEAALDNIGLPVTARPSDLILDDFVRLHNHLT 341


>gi|218962077|ref|YP_001741852.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730734|emb|CAO81646.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 267

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 138/268 (51%), Gaps = 25/268 (9%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL D +I +KI          +V EIG G G LT  ++     ++   E D++ 
Sbjct: 12  KALGQNFLTDKSIAEKIVALGELQPEDSVWEIGPGTGILTDEIIKNNV-QLRAFELDRRL 70

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWISAD 141
           +   K +S+++ NR+ + Q D L+VD+        +P+++IAN+PY I + LL      +
Sbjct: 71  Y---KYLSARYENRIILEQTDILQVDWNSLIRKDGTPLKLIANIPYQITSPLL---ALLE 124

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV------F 195
            +  F+  + L+ QKEV ER++A+  + +Y  L++      +  ++FDIS  +      F
Sbjct: 125 EYSRFFSRIVLMVQKEVAERLSAKPGNKNYAPLTI------RLRLVFDISSKIQVSREKF 178

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250
            P PKV S VI  +P  N P+    E   K+   AF  RRKTL  +L  + G    E L 
Sbjct: 179 SPMPKVDSAVILLLPRENKPVIKHPEHFHKLLHAAFVHRRKTLANNLIPVLGKEKTEELA 238

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTD 278
             + I+   R E L+ EDF  +++ L D
Sbjct: 239 KLSHIDFGKRGEELAEEDFILLSDCLAD 266


>gi|301064596|ref|ZP_07204992.1| dimethyladenosine transferase [delta proteobacterium NaphS2]
 gi|300441344|gb|EFK05713.1| dimethyladenosine transferase [delta proteobacterium NaphS2]
          Length = 282

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 129/270 (47%), Gaps = 21/270 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P K +GQNFL+D  I  KI   S      TV+EIG G G LT + L    + ++ +EKD 
Sbjct: 15  PNKRLGQNFLVDPGISVKIVSLSRFTPEDTVLEIGPGKGALT-IPLAARVKHILAVEKDG 73

Query: 81  QFFPILKD-ISSQHPNRLEIIQDDALKVDF---EKFFNISSPIRIIANLPYNIGTRLLFN 136
           +    L + +     N + ++  D LK+D+   + +F    P+  I NLPYNI + LL  
Sbjct: 74  RLADWLDNRLKMAGINNVTLLHGDILKLDWLDLKSYFPGRMPV--IGNLPYNISSPLLEK 131

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                 W        L+FQKEV  R+TA   S  YG LS+L  +  +      +    FF
Sbjct: 132 MCEKPQW---IAQAILMFQKEVARRLTAVTGSKAYGALSLLVQYHAEVLSRLTVLKGSFF 188

Query: 197 PSPKVTSTVIHFIPHLNPIP--CCLESL-KKITQEAFGKRRKTLRQSLK-------RLGG 246
           P PKV S V+  +    P P     E++ KK+ + AF  RRKT+  SL        R   
Sbjct: 189 PVPKVDSMVVS-LDFEKPYPRRAVNEAVFKKVVKGAFMHRRKTIINSLSGALPDQTRESL 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              L   GI+ + R E L + DF R+++ L
Sbjct: 248 LEALAACGIDPSKRGEALEMGDFLRLSSAL 277


>gi|256824221|ref|YP_003148181.1| dimethyladenosine transferase [Kytococcus sedentarius DSM 20547]
 gi|256687614|gb|ACV05416.1| dimethyladenosine transferase [Kytococcus sedentarius DSM 20547]
          Length = 302

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 21/272 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K  GQNF++D   +++I  +SG   G  V+E+G G G+LT  LL + 
Sbjct: 28  VRELADRLGVSPTKQWGQNFVIDKGTVRRIVRASGVGPGDHVVEVGPGLGSLTLALLPV- 86

Query: 70  ARKVIVIEKDQQFFPILKD-ISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRIIANL 125
              +  +E D +    L D +++  P R   L ++  DAL+V         +P  ++ANL
Sbjct: 87  VDSLTAVEVDPRLAEALPDTVAALAPERATDLRVVHADALRV---TELPGPAPTALVANL 143

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYNI   ++  ++      P   ++ ++ Q EV ER++A   S  YG  S    W     
Sbjct: 144 PYNIAVPVVLTFLERF---PSLRTVLVMVQLEVAERMSAAPGSKIYGAPSPKCAWYGPTR 200

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSLK 242
           +   I  +VF+P+P V S ++     + P      S +++      AF +RRKTLR +L 
Sbjct: 201 LAGRIGRNVFWPAPNVDSGLVRI--DVQPREDAGVSRQEVFACIDAAFAQRRKTLRAALA 258

Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDF 269
              G     E  L  AGI+   R E L +  F
Sbjct: 259 EWAGSAQQAEEALVAAGIDPRTRGEVLDVHGF 290


>gi|319936596|ref|ZP_08011010.1| hypothetical protein HMPREF9488_01843 [Coprobacillus sp. 29_1]
 gi|319808394|gb|EFW04954.1| hypothetical protein HMPREF9488_01843 [Coprobacillus sp. 29_1]
          Length = 271

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 142/281 (50%), Gaps = 25/281 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K  + + +L  YK+   K  GQNFL+DLN +K+I  ++       VIEIG G G L++  
Sbjct: 6   KKSNTQYLLDKYKLQASKKFGQNFLIDLNTIKRIVATTHIDKETCVIEIGPGIGALSEQ- 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRI 121
           L   A  V   E D +   +LK+   +  N +E++  D L VD +K         S + I
Sbjct: 65  LAYHAGYVRCYEIDTRLKDLLKESLGEFTN-IEVVFQDFLTVDLKKIVEELKQTYSKVCI 123

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGW 180
           IANLPY I + +L + I +        S+  + QKEV  ++T  Q +SP    L+ +   
Sbjct: 124 IANLPYYITSDILEHIICSQAS---LSSIHAMVQKEVALKLTDTQYHSP----LTFMIES 176

Query: 181 RTKATMMFDISPHVFFPSPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
               ++   +S +VF P+P+V S +  IH     N +      L  + ++AF ++RKT+ 
Sbjct: 177 IGTISLDMHVSRNVFSPAPRVDSAIIAIHIHKEYNIL------LTHLLKQAFTQKRKTIY 230

Query: 239 QSLKRLGGEN---LLHQAGIETNLRAENLSIEDFCRITNIL 276
            +LK + G N   +L Q  I+ N R E L IED+ ++T  L
Sbjct: 231 NNLKVIFGTNTKYILEQCQIKENKRPEELKIEDYLKLTKYL 271


>gi|315639329|ref|ZP_07894491.1| dimethyladenosine transferase [Campylobacter upsaliensis JV21]
 gi|315480655|gb|EFU71297.1| dimethyladenosine transferase [Campylobacter upsaliensis JV21]
          Length = 260

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 128/268 (47%), Gaps = 20/268 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D  IL KI ++    D   ++EIG G G+LTQ LL +   K   I+ 
Sbjct: 2   IKAKKQYGQNFLHDKEILTKITQAIPK-DVKKIVEIGPGLGDLTQELLKISPVKAYEIDA 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRLLF 135
           D   F   K        +  ++  DA ++   D +K+F       ++ANLPY I ++L+ 
Sbjct: 61  DLIGFLRDKFQKELKEEKFILLHQDASELSCFDEDKYF-------LVANLPYYIASKLIL 113

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +  +      + L ++ QKE+  +  A+  S  +G L VL+    +  ++FD+SP  F
Sbjct: 114 QALEDENC----QGLIVMVQKEMALKFCAKSGSSDFGTLGVLSAMICEREILFDVSPSCF 169

Query: 196 FPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLH 251
            P PKV S+V+  I    L  I C L+S K   +  F   RK L  +LK    E   L  
Sbjct: 170 NPPPKVVSSVMRLIKQKELKQI-CELDSFKSFLRICFKSPRKQLLSNLKAEKRELLELFE 228

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
             G++ N+R   L +  + +I   L D 
Sbjct: 229 DLGLKENVRPHELCVNSYLKIYEKLKDQ 256


>gi|329941211|ref|ZP_08290490.1| dimethyladenosine transferase [Streptomyces griseoaurantiacus M045]
 gi|329299742|gb|EGG43641.1| dimethyladenosine transferase [Streptomyces griseoaurantiacus M045]
          Length = 302

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 132/279 (47%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL
Sbjct: 13  AADIRELAGVLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPADVVVEVGPGLGSLTLALL 72

Query: 67  TLGARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V  +E D      L   ++++ P   +R  ++  DAL+V         +P  ++
Sbjct: 73  E-AADRVTAVEIDDVLAGALPATVAARMPGRADRFALVHSDALRV---TELPGPAPTALV 128

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +  DT+P    +L ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 129 ANLPYNVAVPVLLHML--DTFPSIERTL-VMVQAEVADRLAAGPGSKVYGVPSVKANWYA 185

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR-- 238
           +      I  +VF+P+P V S ++       P+       +   +   AF +RRKTLR  
Sbjct: 186 EVRRAGSIGRNVFWPAPNVDSGLVSLTRRAEPVKTTAAKAEVFAVVDAAFAQRRKTLRAA 245

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
               +      E  L  AG+    R E L++E+F RI  
Sbjct: 246 LAGWAGSAAAAEAALVAAGVPPQARGEALTVEEFARIAE 284


>gi|262200033|ref|YP_003271242.1| dimethyladenosine transferase [Haliangium ochraceum DSM 14365]
 gi|262083380|gb|ACY19349.1| dimethyladenosine transferase [Haliangium ochraceum DSM 14365]
          Length = 295

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 129/276 (46%), Gaps = 14/276 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LG 69
           +T++  Y +  KK  GQNFL+     + I +++       VIE GAG G LT  L   + 
Sbjct: 13  RTLMRKYGLGAKKSWGQNFLISERAYRAIVDAAVRGGDDWVIEFGAGLGTLTMRLAERVP 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYN 128
             KV+ +E+D++   +L+     H + +EII+ +AL  D           + +  NLPYN
Sbjct: 73  DGKVLAVERDREMAEVLRG-ELGHLDNVEIIEGNALTYDIAMVGRWYGERVSVCGNLPYN 131

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I ++++ + I A          T++ Q+E+ +R+ A   +  YG L VL G     + + 
Sbjct: 132 IASQIIMHIIDARE---HVARATVMIQREMADRLVAVPGTKAYGALGVLVGTFADVSTVI 188

Query: 189 DISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            +    F P+PKV+STV+        H+            +   AFG+RRK LR +L   
Sbjct: 189 HVPASGFVPAPKVSSTVVRLDLLSDEHMRVQVSDFAHYADVVHGAFGQRRKKLRNALGAR 248

Query: 245 GGENL----LHQAGIETNLRAENLSIEDFCRITNIL 276
              ++    L  A I+   R E L   +F R+ + L
Sbjct: 249 WPMDVVDAGLSDADIDGGRRGETLDRVEFARLADHL 284


>gi|91200585|emb|CAJ73634.1| similar to dimethyladenosine transferase KsgA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 310

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 143/294 (48%), Gaps = 36/294 (12%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ + +   ++  K  GQ+ L+D NIL  IA S+       V+EIG G G+LT+ L    
Sbjct: 14  LRKLFARKGVVLNKKYGQHILIDQNILSYIANSASLQKDDVVLEIGTGTGSLTRYLAE-K 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL----KVDFEKFFNIS--------S 117
           A  V  +E D + F +  +I   + N + II  D L    K++ E    IS        +
Sbjct: 73  ACHVFTVEIDSKLFDLSSEILKFYKN-ITIINADILQSKHKLNAEIVTRISGWLATNNHT 131

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             ++++NLPYNI T ++ N + +D   P    + L+ QKE+ ER+TA   S  YG LSV+
Sbjct: 132 AFKVVSNLPYNISTPVIINLLESDL--PI-SLMVLMLQKEITERLTAAPGSREYGILSVI 188

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTV----IHFIPHLNPI---PCCLESLKKITQEAF 230
           T   ++  +M  + P VF+P P+V+S +    +H   + N I   P  +    KI    F
Sbjct: 189 TQLFSEVELMKTLPPEVFWPRPEVSSAIVKMSVHRAKYANKITDYPFFI----KIIYAIF 244

Query: 231 GKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             RRKTL  S+++L          + +L    +  N+R E L  E    +T  L
Sbjct: 245 TSRRKTLLNSIEKLKLPGVSRSELKRILAAMQLNENIRGEMLDPEQLIHLTESL 298


>gi|172037411|ref|YP_001803912.1| dimethyladenosine transferase [Cyanothece sp. ATCC 51142]
 gi|254807863|sp|B1WRJ7|RSMA_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|171698865|gb|ACB51846.1| rRNA dimethyladenosine transferase [Cyanothece sp. ATCC 51142]
          Length = 270

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 137/274 (50%), Gaps = 25/274 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L++I +++       ++EIG G G LT+ LL L  + +I +E D 
Sbjct: 4   PRKRFAQHWLRSETALEQIIQAANLKKSDRLLEIGPGTGILTRRLLPL-VQSLIAVELDW 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVD-------FEKFFNISSPIRIIANLPYNIGTRL 133
                L        N L ++Q D LK+D       F KF  I+   +++AN+PYNI + +
Sbjct: 63  DLCKKLVKSLGDEDNFL-LLQGDILKLDIATEAQQFPKFLPIN---KVVANIPYNITSPI 118

Query: 134 LFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           L   +   + P  P ++ + LL QKEV +RI A   S +YG LS+   +      + D+ 
Sbjct: 119 LDKLLGRISSPKQPSYDLIVLLIQKEVAQRIIAYPGSKNYGALSIKMQYLADCNYICDVP 178

Query: 192 PHVFFPSPKVTSTVIHFIPH--LNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
              F+P PKV S VI F P   LN    P  LE+L  +    F  RRK LR +L+ L   
Sbjct: 179 KKSFYPPPKVDSAVITFRPRSLLNSATNPKYLETLINL---GFSSRRKMLRNNLQSLIDR 235

Query: 248 NLLHQAGIETNL----RAENLSIEDFCRITNILT 277
           +LL +   E +L    RAENL +  +  ++N  +
Sbjct: 236 DLLTEFLTEIDLNEQVRAENLDLNQWIALSNYFS 269


>gi|262277389|ref|ZP_06055182.1| dimethyladenosine transferase [alpha proteobacterium HIMB114]
 gi|262224492|gb|EEY74951.1| dimethyladenosine transferase [alpha proteobacterium HIMB114]
          Length = 255

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 14/220 (6%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           + KK  GQNFL++ N+ ++I +    ++   ++E+G+G   LT  ++    +K   +E D
Sbjct: 1   MAKKKFGQNFLINKNLCEEILKYE-KINNNNILEVGSGNLALTTKIINKNPKKFFSLEID 59

Query: 80  QQFFPILKDISSQHPNRL---EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                   D+  +H N L    I + DAL ++    FN      II+NLP+NI ++LL  
Sbjct: 60  D-------DLIEKHKNSLISKYIYKGDALNINELDLFN-KDKFSIISNLPFNISSKLLIK 111

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           W+         +S+TL+FQKE+ +RI A++N   YGR++VL       + + +++   F+
Sbjct: 112 WLRLQNDYKCIQSMTLMFQKELADRILAKENEKKYGRITVLVNAFFALSKIVEVNKKDFY 171

Query: 197 PSPKVTSTVIHFIP-HLNPIPC-CLESLKKITQEAFGKRR 234
           P PKV +TVI F     N I     + L+KIT   F +RR
Sbjct: 172 PRPKVDATVIKFSSLKKNKIKKENFQKLEKITFSFFNERR 211


>gi|21221587|ref|NP_627366.1| dimethyladenosine transferase [Streptomyces coelicolor A3(2)]
 gi|256787224|ref|ZP_05525655.1| dimethyladenosine transferase [Streptomyces lividans TK24]
 gi|289771122|ref|ZP_06530500.1| dimethyladenosine transferase [Streptomyces lividans TK24]
 gi|27151606|sp|Q9K3R5|RSMA_STRCO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|8894782|emb|CAB95942.1| putative dimethyladenosine transferase [Streptomyces coelicolor
           A3(2)]
 gi|289701321|gb|EFD68750.1| dimethyladenosine transferase [Streptomyces lividans TK24]
          Length = 286

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL   
Sbjct: 15  VRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 73

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V  +E D      L   ++++ P   +R  ++  DA+ V   +     +P  ++ANL
Sbjct: 74  ADRVTAVEIDDVLAGALPATVAARMPARADRFALVHSDAMHV---RELPGPAPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  DT+P    +L ++ Q EV +R+ A   S  YG  SV   W  +  
Sbjct: 131 PYNVAVPVLLHML--DTFPGIERTL-VMVQAEVADRLAAGPGSKVYGVPSVKANWYAEVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238
               I  +VF+P+P V S ++  +    P+       +   +   AF +RRKTLR     
Sbjct: 188 RAGSIGRNVFWPAPNVDSGLVSLVRRSEPLRTTASKAEVFAVVDAAFAQRRKTLRAALAG 247

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +      E  L  AG+    R E L++E+F RI  
Sbjct: 248 WAGSAAAAEAALVGAGVSPQARGEALTVEEFARIAE 283


>gi|94970375|ref|YP_592423.1| dimethyladenosine transferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|122064276|sp|Q1ILA1|RSMA_ACIBL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94552425|gb|ABF42349.1| dimethyladenosine transferase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 285

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 131/273 (47%), Gaps = 23/273 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K  +GQNFL D +   KI E+ G +   TV+EIG G G +T  L    A+++I +E D+ 
Sbjct: 15  KAKLGQNFLSDASGALKIVEALGDISDATVVEIGPGRGAITDHLAK-RAKRLIAVEIDRV 73

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFE----------KFFNISSP--IRIIANLPYNI 129
               L+   S+  N +EI++ D L V+            +    + P  +RII NLPY I
Sbjct: 74  LAAQLRLRYSRLEN-VEILEADILAVELSTVLAQRIGPLRDLRPTKPEKVRIIGNLPYYI 132

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + +L     A     F     ++ QKEV +RI A+  +  YG LS  +   T    +F 
Sbjct: 133 TSDILLRLFEAHALIDFA---VIMVQKEVADRIAAKPGTRDYGLLSATSQLYTHVEKLFT 189

Query: 190 ISPHVFFPSPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKT----LRQSLKR 243
           + P  F P+P+V STV  +   P L  +    E      +  FG++RKT    LR +   
Sbjct: 190 LPPGSFNPAPQVHSTVLKLQMEPKLEALGVDEEGFDSFLKLIFGQKRKTLFNNLRVAYDM 249

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 +   G+++++RAE +++E   ++ N L
Sbjct: 250 AKAREAMKAVGLKSDVRAEAVALEKTAQLYNEL 282


>gi|229819472|ref|YP_002880998.1| dimethyladenosine transferase [Beutenbergia cavernae DSM 12333]
 gi|229565385|gb|ACQ79236.1| dimethyladenosine transferase [Beutenbergia cavernae DSM 12333]
          Length = 324

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 133/276 (48%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   I P K +GQNF+ D   +++I  ++G   G  V+E+G G G+LT  LL  G
Sbjct: 34  VRALAAGLGIRPTKTLGQNFVTDAGTVRRIVRAAGVTAGDVVVEVGPGLGSLTLGLLEAG 93

Query: 70  ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V+ +E D      L    ++H     +RL +I  DAL V          P  ++ANL
Sbjct: 94  A-TVVAVEIDPVLAGALPGTIAEHAPDVADRLTVITADALDVTELP----GRPSAMVANL 148

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L   +  + +P     L ++ Q EV +R+ A   S  YG  SV   W   A 
Sbjct: 149 PYNVAVPVLLTML--ERFPELARVL-VMVQAEVADRLVAPPGSRTYGVPSVKAAWYAAAA 205

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
               I   VF+P P V S ++       P P  L + +      AF +RRKTLR +L   
Sbjct: 206 RAGSIGRTVFWPVPNVDSALVRLERRPAPAPEDLRAEVFGCVDAAFAQRRKTLRAALAGW 265

Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
            G     E++L  AG++  LR E L +E F R+ ++
Sbjct: 266 AGSPSDAESILRAAGVDPTLRGERLDVEAFARVASV 301


>gi|325957949|ref|YP_004289415.1| Ribosomal RNA small subunit methyltransferase A [Methanobacterium
           sp. AL-21]
 gi|325329381|gb|ADZ08443.1| Ribosomal RNA small subunit methyltransferase A [Methanobacterium
           sp. AL-21]
          Length = 273

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 20/238 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S +LK IL    I   K  GQN+L++ +IL KI ++S       V+EIGAG G LT + L
Sbjct: 3   SETLK-ILKQNGIKLDKRKGQNYLVNRDILSKIIQNSELSKNDRVLEIGAGIGTLT-IPL 60

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              A KV  +E+D +   +LK  +     + +E+I +DA K+D      + S  ++I+NL
Sbjct: 61  AKNAGKVYAVEQDGKAANVLKKRLEKLELDNVEVIVEDATKMD------LPSVNKVISNL 114

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + + F  +      PF E   L++QKE  +R+ A     +Y RLSV+    ++A 
Sbjct: 115 PYQISSPITFKILEN----PF-EMAVLMYQKEFAQRMVASPGDRNYSRLSVMMYLYSEAE 169

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSL 241
           ++F +S + FFP PKV S VI   P ++    P  ++    +T+  F  ++K +R +L
Sbjct: 170 ILFQVSENDFFPKPKVASAVIKMQPKIDVDIDPFFVD----VTRAMFQHKKKKIRNAL 223


>gi|145295068|ref|YP_001137889.1| dimethyladenosine transferase [Corynebacterium glutamicum R]
 gi|166221660|sp|A4QCP0|RSMA_CORGB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|140844988|dbj|BAF53987.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 293

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 132/282 (46%), Gaps = 24/282 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D N +++I  ++       V+E+G G G+LT + L   
Sbjct: 15  IRALAEKLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLT-LALVES 73

Query: 70  ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKV---DFEKFFNISSPIRII 122
           A  V  +E D +    L +     +    ++L I+  DALKV   D E       P  ++
Sbjct: 74  AASVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKVQQSDME-----VQPTALV 128

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P    + ++ Q EV +R+ A   S  YG  SV   +  
Sbjct: 129 ANLPYNVSVPVLLHMLEEF---PTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYG 185

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQ 239
             T    I  +VF+P+PK+ S ++  +          E+ KK   I   AF +RRKTLR 
Sbjct: 186 PVTRAGSIGKNVFWPAPKIESGLVKIVREDTAWKQDDETRKKVWPIIDAAFLQRRKTLRA 245

Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +L    G     E  L  A I+  LR E L + D+ R+  +L
Sbjct: 246 ALSGHYGSGQAAEEALRAADIDPTLRGEKLDVTDYVRLAGVL 287


>gi|19552136|ref|NP_600138.1| dimethyladenosine transferase [Corynebacterium glutamicum ATCC
           13032]
 gi|62389800|ref|YP_225202.1| dimethyladenosine transferase [Corynebacterium glutamicum ATCC
           13032]
 gi|27151568|sp|Q8NRY1|RSMA_CORGL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21323676|dbj|BAB98303.1| Dimethyladenosine transferase (rRNA methylation) [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325135|emb|CAF19616.1| PUTATIVE DIMETHYLADENOSINE TRANSFERASE [Corynebacterium glutamicum
           ATCC 13032]
          Length = 293

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 18/279 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D N +++I  ++       V+E+G G G+LT + L   
Sbjct: 15  IRALAEKLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLT-LALVES 73

Query: 70  ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D +    L +     +    ++L I+  DALKV  ++      P  ++ANL
Sbjct: 74  AASVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKV--QQSDMAVQPTALVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +      P    + ++ Q EV +R+ A   S  YG  SV   +    T
Sbjct: 132 PYNVSVPVLLHMMEEF---PTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYGPVT 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLK 242
               I  +VF+P+PK+ S ++  +          E+ KK   I   AF +RRKTLR +L 
Sbjct: 189 RAGSIGKNVFWPAPKIESGLVKIVREDTAWKQDDETRKKVWPIIDAAFLQRRKTLRAALS 248

Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              G     E  L  A I+  LR E L + D+ R+  +L
Sbjct: 249 GHYGSGQAAEEALRAADIDPTLRGEKLDVTDYVRLAGVL 287


>gi|307128523|ref|YP_003880553.1| dimethyladenosine transferase [Candidatus Sulcia muelleri CARI]
 gi|306482985|gb|ADM89855.1| dimethyladenosine transferase [Candidatus Sulcia muelleri CARI]
          Length = 254

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 129/257 (50%), Gaps = 19/257 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ FL D NI KKI  S    +   ++EIG G G LTQ LL        +IE D++
Sbjct: 4   KKKLGQFFLHDKNIAKKIVNSISFKESKNIVEIGPGMGILTQYLLLNNKNLF-LIEIDKK 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPYNIGTRLLFN 136
           +   LK    ++P    II+++    +F     + FF  S    +I N PYNI +++LF 
Sbjct: 63  YVSYLK---MKYP----IIKNNIFHKNFLNWKPKDFFLYS--FTLIGNFPYNISSQILFY 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I    + P  E + + FQKEV +RIT++  + +YG+LSV+     K   +F ++  VF 
Sbjct: 114 IIKYREYIP--ECIGM-FQKEVADRITSKHMNKNYGKLSVIMQTFYKIEYLFTVNNTVFR 170

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P V S V+  +   N I        KI + AF  RRK L  SLK L      +Q  + 
Sbjct: 171 PKPNVKSAVVRMLKKKNNINIKDSIFFKIVKTAFLYRRKKLYNSLKILSLSPDFYQNPLL 230

Query: 257 TNLRAENLSIEDFCRIT 273
              R E LS+ DF  +T
Sbjct: 231 KK-RVEQLSVNDFILLT 246


>gi|121612576|ref|YP_001001355.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006244|ref|ZP_02272002.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249040|gb|EAQ72002.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 266

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 131/264 (49%), Gaps = 18/264 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   K   I+ D  
Sbjct: 5   KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138
             PILK    +    LE  + + +  D  + FN S    P  ++ANLPY + + ++   +
Sbjct: 62  LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      L ++ QKE+ E+  A++ +  +  L VL+    +  ++FD+ P  F P 
Sbjct: 119 EDKNCL----GLIVMVQKEMAEKFCAKEGNGEFSSLGVLSAMICERKILFDVDPQCFNPP 174

Query: 199 PKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAG 254
           PKV S V+  I     N + C +E+ K   ++ F   RK L  +LK    + L  L   G
Sbjct: 175 PKVISAVMSLIKTKDFNEL-CEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTLG 233

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           ++ N+R   + ++ + +I + L D
Sbjct: 234 LKENIRPHEICVDSYLKIYDKLKD 257


>gi|256420284|ref|YP_003120937.1| dimethyladenosine transferase [Chitinophaga pinensis DSM 2588]
 gi|256035192|gb|ACU58736.1| dimethyladenosine transferase [Chitinophaga pinensis DSM 2588]
          Length = 249

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 134/261 (51%), Gaps = 27/261 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL D NI +KI E+     G  ++E+G G G +T+ LL +       +E D +
Sbjct: 5   KKSLGQHFLKDENICRKIVEALPVNPGQQIVEVGPGAGAITKYLLQIPDVHFKAVELDTE 64

Query: 82  FFPILKDISSQHPN-RLEIIQDDALK--VDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               ++ +   +P  + +II +  L   V ++  FN      +I N PYNI ++++F  +
Sbjct: 65  ---KVQYLEKTYPAIQGKIINESILDTPVPYQGEFN------LIGNFPYNISSQIMFRVL 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               W     S+  +FQKEV  RI A K    YG LSVLT    K   +F++  + F P 
Sbjct: 116 E---WRQQVPSVVGMFQKEVALRIAATKGK-EYGILSVLTQAFYKVEYLFEVHENCFNPP 171

Query: 199 PKVTSTVIHFIPHLNPIPCCLE--SLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           PKV S VI     L+ +    +  S +K   + + AFG+RRK LR  LK L  + +L  +
Sbjct: 172 PKVKSAVI----RLDRLETSYDIASERKFFVLVKTAFGQRRKQLRNPLKGLFAKEVLQDS 227

Query: 254 GIETNLRAENLSIEDFCRITN 274
               N RAE LS+ DF  +++
Sbjct: 228 IF--NKRAEELSVADFAALSH 246


>gi|51246027|ref|YP_065911.1| dimethyladenosine transferase [Desulfotalea psychrophila LSv54]
 gi|62900516|sp|Q6AL71|RSMA_DESPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|50877064|emb|CAG36904.1| related to dimethyladenosine transferase [Desulfotalea psychrophila
           LSv54]
          Length = 295

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 33/289 (11%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           +T L  +K+ PKK  GQNFL+     + I  +    +   + EIG G G LT + +   A
Sbjct: 8   RTDLKKHKLAPKKRFGQNFLVHKQTAEAIVRAGEVGEDDIITEIGVGLGALT-VPMAHQA 66

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNI 129
           + V  IE D       ++     P+ + +I  D LKV F          ++I+ANLPY+I
Sbjct: 67  KHVYGIEIDNGIIKYHEE-EQDLPDNVTLIHQDVLKVGFGDLAEKCGGKLKILANLPYSI 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              L+F  I      P   + T++ Q+EV +R+ A+  +  YG  ++L G          
Sbjct: 126 SHPLIFKLIEHRDIIP---TATIMLQEEVADRLLAKPGTKEYGIPTILLGCCASIKKKMV 182

Query: 190 ISPHVFFPSPKVTSTVIHF-------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           + P  F P PK+ S VI         +P  N      E L ++ + AF +RRKT+  +L 
Sbjct: 183 LKPAEFHPRPKIDSAVITVDFTKPPELPEYNK-----ELLSRVVRSAFSQRRKTILNTLS 237

Query: 243 ---------------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                          +   E  + +AG   +LR E LSI+DF R+T + 
Sbjct: 238 SASFFFAEKENKAKNKAMTEKTIEKAGFAVSLRPEVLSIQDFVRLTTVF 286


>gi|145349952|ref|XP_001419390.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579621|gb|ABO97683.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 320

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 117/239 (48%), Gaps = 14/239 (5%)

Query: 3   MNNKSHSLKTILSHYKIIP-KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           +  KSH      S Y+ I   K  GQ+ L +  I+  I + +G      V+EIG G GNL
Sbjct: 22  VRKKSHGGAEDRSAYQGIQFLKSFGQHILKNPAIVNAIVDKAGVKSTDVVLEIGPGTGNL 81

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSP 118
           T  LL    +KVI +E D +    L+      P   +RLEIIQ D LKVD   +F++   
Sbjct: 82  TTKLLD-ACKKVIAVEFDPRMVLELRRRVQSDPAQNSRLEIIQGDFLKVDLP-YFDVC-- 137

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
              +AN+PY I + L+F  ++     P + S TL+FQ+E   R+ A      Y RLSV T
Sbjct: 138 ---VANVPYQISSPLIFKLLAHR---PMFRSATLMFQREFAMRLVAPPGDALYCRLSVNT 191

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
               +   +  +  + F P PKV S+V+   P    IP   +    + +  FG++ KTL
Sbjct: 192 QLLARTQHILKVGKNNFRPPPKVDSSVVRIEPRHPQIPVNFKEWDGLVRFCFGRKNKTL 250


>gi|327542154|gb|EGF28647.1| rRNA adenine dimethylase [Rhodopirellula baltica WH47]
          Length = 326

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 141/291 (48%), Gaps = 30/291 (10%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L   L+   + P    GQNFL+DLN+++ IA S+       V+EIG G G+LT ++ +  
Sbjct: 34  LSKRLTAAGLRPVSKYGQNFLIDLNLVELIARSAEIGPSDIVLEIGTGVGSLTSIMAS-Q 92

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR--------- 120
           A  ++ +E DQ  F +  +  +  P+ +++IQ DALK       +I   IR         
Sbjct: 93  AGAILTVEIDQNLFQLASEELAPFPH-VKMIQGDALKNKSTFRDDIMESIREAKSRLPDD 151

Query: 121 ----IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
               ++ANLPYN+ T ++ N +  D  P   + + +  QKE+GER+ A   S  YG LS+
Sbjct: 152 SKFMLVANLPYNVATPIVSNLLHQDPPP---DRIVVTIQKELGERMVAGPGSKDYGALSI 208

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPH--LNPIPCCLESLKKITQEAFGKR 233
                 +A ++  + P VF+P PKV S ++   + H   N IP  L+   +  +  F  R
Sbjct: 209 WIQATCRAEIVRILPPTVFWPRPKVDSAIVRLDVDHERRNAIP-DLKYFHQTVRALFFHR 267

Query: 234 RKTLRQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RK LR          L +   + +L + G     RAE L++E    +   L
Sbjct: 268 RKFLRSVVISAMKGRLDKPAIDEILGRLGHGETARAEELNLEQISELVEAL 318


>gi|325294975|ref|YP_004281489.1| ribosomal RNA small subunit methyltransferase A [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065423|gb|ADY73430.1| Ribosomal RNA small subunit methyltransferase A [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 253

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 125/261 (47%), Gaps = 16/261 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL D NI++KI +S        VIEIG G G LT+ +L    +++IVIE D+ 
Sbjct: 4   KKSLGQHFLKDRNIIRKIVDSGNITFEDRVIEIGPGGGALTEEILKRNPKELIVIEIDKD 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +   L++   +  +R++I+  DA K DF  F       +   NLPYN+ T +L N +   
Sbjct: 64  WVEHLRE---KFGDRIKIVNADATKFDFSSF---DGKFKYFGNLPYNVSTAILRNLLDHK 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 E    + QKEV  R++A+K    YG L  L         +FD+SP  F P PKV
Sbjct: 118 DS---VEKGIFMVQKEVANRLSARKGK-EYGYLPALLSLFFDIKKLFDVSPRAFTPPPKV 173

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL-- 259
            STV      + P    +E  + I  E+F KR  + R+   +   +   +   I   +  
Sbjct: 174 MSTVF----MMTPKEFDIEEKELIEFESFLKRAFSQRRKKLKSNLKLKNYPEEISEYMER 229

Query: 260 RAENLSIEDFCRITNILTDNQ 280
           RAE L  E    +   + D Q
Sbjct: 230 RAEKLPPEKLLELFYTVRDFQ 250


>gi|257469508|ref|ZP_05633600.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185]
 gi|317063752|ref|ZP_07928237.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185]
 gi|313689428|gb|EFS26263.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185]
          Length = 264

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 17/264 (6%)

Query: 22  KKYMGQNFLLDL-NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL D   +L+KI E S   +  TV+EIG G G LT +LL   A KV+ +E D+
Sbjct: 6   KKKFGQNFLTDQKEVLRKIMEVSAVNENDTVLEIGPGEGALTALLLD-TAEKVVTVEIDR 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               IL+     +P +  ++ +D L+ D +++  + +  +++AN+PY I + ++   I  
Sbjct: 65  DLEKILRKKFDGNP-KYTLVMNDVLETDLKEY--VGAGTKVVANIPYYITSPIINKLIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  + + ++ QKEV ERI A+K       L++   +  +A  +F I    F P PK
Sbjct: 122 ---RDVIDEIYIMVQKEVAERICAKKGKER-SVLTLAVEYFGEAEYLFTIPKEAFTPIPK 177

Query: 201 VTS---TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQ 252
           V S   ++  +           +   K  + AF  +RK L  +   LG        +L++
Sbjct: 178 VDSAFMSIKLYKDDKYKKLVAEDIFFKYVKAAFANKRKNLLNNFTSLGMSKDELRVVLNE 237

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
            GI+   RAENL+IEDF  +  + 
Sbjct: 238 VGIKETERAENLTIEDFINLIAVF 261


>gi|238028595|ref|YP_002912826.1| dimethyladenosine transferase [Burkholderia glumae BGR1]
 gi|237877789|gb|ACR30122.1| Dimethyladenosine transferase [Burkholderia glumae BGR1]
          Length = 276

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 125/281 (44%), Gaps = 25/281 (8%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTLGARK 72
           H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  +   L      
Sbjct: 7   HQGHFARKRFGQNFLVDTGVIDSIVSTIRPERGQRMVEIGPGLGALTGPVIERLATPEAP 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIG 130
           +  +E D+     LK    +  + LE+   DAL  DF           +RII NLPYNI 
Sbjct: 67  LHAVELDRDLIGRLK---QRFGSLLELHAGDALGFDFGALALPGEQPSLRIIGNLPYNIS 123

Query: 131 TRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           + LLF+ +       F E +     + Q EV ER+ A+  S  + RLSV+  +R     +
Sbjct: 124 SPLLFHLMR------FAERVVDQHFMLQNEVVERMVAEPGSKAFSRLSVMLQYRYVMDKL 177

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-----LKKITQEAFGKRRKTLRQSLK 242
            D+ P  F P PKV S ++  IPH    P  L       L ++   AF +RRK LR +L 
Sbjct: 178 IDVPPESFQPPPKVDSAIVRMIPH---APHELAEVDVGVLGEVVTAAFSQRRKMLRNTLG 234

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                      G +   RAE++ + ++ R+   +   +  A
Sbjct: 235 AYRDVVDFEALGFDLARRAEDVGVAEYVRLARTVAATRPAA 275


>gi|300681352|emb|CAZ96099.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570]
          Length = 333

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 139/287 (48%), Gaps = 34/287 (11%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++++ S  + +P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL  
Sbjct: 61  TIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQA 120

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPI 119
           GA  V  +EKD+    ++KD       +L++I++D  K            EK        
Sbjct: 121 GA-TVFAVEKDKHMAALVKDRFGS-TEQLKVIEEDITKFHIRSHFLPFMKEKCHATKKLA 178

Query: 120 RIIANLPYNIGT---RLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLS 175
           ++++NLP+N+ T   RLL            +  + L+ Q E   R+  A   SP Y  ++
Sbjct: 179 KVVSNLPFNVSTEVVRLLL------PMGDVFSVVVLMLQDETAVRLADASIQSPEYRLIN 232

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRR 234
           V   + ++    F ++   FFP PKV   VI F + +    P            AF  +R
Sbjct: 233 VFVNFYSEPEYKFRVNRENFFPQPKVDGAVISFKLKNAEEYPPV--------NSAFMGKR 284

Query: 235 KTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           K LR+SL+ L      E+ L   G+    R  +L ++DF R+ N LT
Sbjct: 285 KMLRKSLQHLCSSSEIESALGNIGLPVTARPSDLILDDFVRLHNHLT 331


>gi|315230155|ref|YP_004070591.1| dimethyladenosine transferase [Thermococcus barophilus MP]
 gi|315183183|gb|ADT83368.1| dimethyladenosine transferase [Thermococcus barophilus MP]
          Length = 280

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 16/231 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           ++LS Y +     +GQNFL+  +I+K+  E +      TV+EIG G G LT  L +  A+
Sbjct: 8   SLLSKYNLRINSDLGQNFLIVDDIIKREVERAEIKANETVLEIGPGLGFLTDEL-SKYAK 66

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV  +EKD +   IL+   S     +EII+ DALKV+F +F       +I++NLPY I +
Sbjct: 67  KVYAVEKDSRLVEILQKEYSW--KNVEIIRGDALKVEFPEF------DKIVSNLPYQISS 118

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            + F ++  D     ++   L++Q E  +R+TA+    +Y RLSV+   +    ++  I 
Sbjct: 119 PITFKFLRYD-----FKKAVLIYQLEFAQRMTAKPGDKNYSRLSVMVQAKADVELVERIG 173

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
              F+P PKV S VI   P   P    +E    + +  F  RRK   ++LK
Sbjct: 174 RGAFYPKPKVDSAVIILNP--KPKEEQIELDDSLVKALFQHRRKKASKALK 222


>gi|88856859|ref|ZP_01131512.1| dimethyladenosine transferase [marine actinobacterium PHSC20C1]
 gi|88813929|gb|EAR23798.1| dimethyladenosine transferase [marine actinobacterium PHSC20C1]
          Length = 276

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 138/272 (50%), Gaps = 34/272 (12%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P K +GQNF++D N +++I +++  + G TV+E+G G G+LT  LL  GA  V+ +E 
Sbjct: 19  IQPTKKLGQNFVIDPNTVRRIVKAAHVVSGETVVEVGPGLGSLTLGLLETGA-SVVAVEI 77

Query: 79  DQQFFPILK-DISSQHPN-RLEIIQDDALKV----DFEKFFNISSPIRIIANLPYNIGTR 132
           D++    L   +S   P+ +L +I DDAL+V    D  + F        +ANLPYN+   
Sbjct: 78  DKRLAAQLPLTVSQMQPDAQLTVITDDALRVTELPDDPRVF--------VANLPYNVSVP 129

Query: 133 LLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           +L +++        ++SL    ++ Q EVG R+ A   S  YG  S+   W  + +    
Sbjct: 130 VLLHFLE------HFDSLDRGLVMVQAEVGNRVAAGPGSKVYGSPSIKAAWYGEFSTAGL 183

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQSLKRLGG 246
           +S  VF+P P V S ++ F       P  +E  K    +   AF +RRK LRQSL  + G
Sbjct: 184 VSRQVFWPVPNVDSVLVRF--ERREQPGTVEERKATFALVDAAFQQRRKMLRQSLSSVLG 241

Query: 247 ENL-----LHQAGIETNLRAENLSIEDFCRIT 273
            +      L  AG+    R E L++ DF  I 
Sbjct: 242 NSTAASERLIAAGVAPTARGEELTVHDFLAIA 273


>gi|75911082|ref|YP_325378.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413]
 gi|122064280|sp|Q3M3F3|RSMA_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|75704807|gb|ABA24483.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413]
          Length = 271

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 13/267 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P++   Q++L     L  I +++       ++EIG G G LT+ LL L    ++ +E D+
Sbjct: 4   PRRVFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPL-VEALLAVEIDR 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLFN 136
               +L     Q  N L ++Q D L +D       F     P +++AN+PYNI   ++  
Sbjct: 63  DLCKLLVKQLGQKENFL-LLQGDFLTLDLVANLLTFPKFQKPNKVVANIPYNITGPIIEK 121

Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            +   A+  P  ++S+ LL QKEV ER+ A+  S  +G LSV   +      + D+    
Sbjct: 122 LLGTIANPNPEPFDSIVLLIQKEVAERLYAKAGSRTFGALSVRVQYLADCEFICDVPAGA 181

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249
           F P PKV S V+   P    IP    + L+ + +  FG +RK LR +L+ +   +    L
Sbjct: 182 FHPPPKVDSAVVRLRPRQIQIPARDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLSQL 241

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L Q  I    RAE++S + +  + N+L
Sbjct: 242 LEQLNINPQARAEDISTQQWVELANLL 268


>gi|239906699|ref|YP_002953440.1| dimethyladenosine transferase [Desulfovibrio magneticus RS-1]
 gi|239796565|dbj|BAH75554.1| dimethyladenosine transferase [Desulfovibrio magneticus RS-1]
          Length = 276

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 121/259 (46%), Gaps = 12/259 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+ +GQNFL+D N+  KI          TVIEIG G G L+  +L  G R  + +EKD++
Sbjct: 20  KRSLGQNFLVDPNVSAKIVAQLRIGPEDTVIEIGPGRGALSGHILAAGPRAYLALEKDRE 79

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +   +  +HP     + D AL++D+ +   +    +++ NLPYNI + LL++  S  
Sbjct: 80  ---LAARLPREHPGAHPALVD-ALRLDWSRLDALDG-AKLVGNLPYNIASPLLWDICSQA 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +    +     + Q EV  R+ A      YG L+  T    +    F +SP VF P PKV
Sbjct: 135 S---RFAVGVFMVQHEVALRLCAAPGGRQYGALTAWTSSFARFDYCFKVSPGVFRPQPKV 191

Query: 202 TSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA---GIET 257
            S V+   P  +   P     L  + +  F  RRK L   LK    E L       GIE 
Sbjct: 192 DSAVVAVTPRASKERPEDPAGLATLLKRLFSMRRKQLAGILKPHWDEALAQACAGHGIEG 251

Query: 258 NLRAENLSIEDFCRITNIL 276
            +R E L+   F ++  +L
Sbjct: 252 RVRPETLTPGQFQQLAKLL 270


>gi|187735621|ref|YP_001877733.1| dimethyladenosine transferase [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425673|gb|ACD04952.1| dimethyladenosine transferase [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 459

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 141/285 (49%), Gaps = 15/285 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   ++ +L  +++ P K +GQNFL D N+ + I E         V+E+G G G+LT+  
Sbjct: 2   KPSEIRNVLEDHEVRPSKSLGQNFLTDENVARWIVEQLEIRPQDCVVEVGPGTGSLTEHA 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
             L  RK++++E D +     K+  +  P+ +E+   D    D    F   +P++ + NL
Sbjct: 62  APL-CRKLVLVEFDSRLAEYQKERWAGDPH-VEVHHADGASWDPRGLF-AEAPVKFLGNL 118

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS--VLTGWRTK 183
           PY+ G  +L N++S    P   E   ++ QKE  +RI A  +   +G LS  +   W  +
Sbjct: 119 PYSAGGAILQNFLSR---PSAVERAVVMLQKEFIDRILATPDDDAFGLLSLRIQKNWIPR 175

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSL 241
           A  +  I P  F P P++ STV+   P     +P   + L  ++ ++AF +RRK L++ L
Sbjct: 176 A--LKTIPPEAFHPRPRIDSTVMLLTPRPARELPPYDDRLMDELMRKAFSQRRKQLKKQL 233

Query: 242 -KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN--QDIA 283
                 E +    G+  + RAE L++  +  +  +   N  +D+A
Sbjct: 234 PASPPWEGVAASLGLSPSARAEELNLSQWVELARVYDTNPLKDVA 278


>gi|110590504|pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
           Plasmodium Falciparum
 gi|110590505|pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
           Plasmodium Falciparum
          Length = 299

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 11/230 (4%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           + GQ+ L +  IL KI  ++       V+EIG G GNLT  LL L A+KVI I+ D +  
Sbjct: 19  FQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMI 77

Query: 84  P-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             + K    +  N LE+ + DA+K  F KF ++ +     AN+PY I + L+F  IS   
Sbjct: 78  SEVKKRCLYEGYNNLEVYEGDAIKTVFPKF-DVCT-----ANIPYKISSPLIFKLISHR- 130

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             P ++   L+FQKE  ER+ A     +Y RL++      K T + +++   F P PKV 
Sbjct: 131 --PLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVD 188

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           S ++  IP  +      +    + +  F ++RKTL    KR    N+L  
Sbjct: 189 SVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 238


>gi|124808498|ref|XP_001348329.1| dimethyladenosine transferase, putative [Plasmodium falciparum 3D7]
 gi|23497221|gb|AAN36768.1|AE014818_33 dimethyladenosine transferase, putative [Plasmodium falciparum 3D7]
          Length = 381

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 12/235 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+ KK+ GQ+ L +  IL KI  ++       V+EIG G GNLT  LL L A+KVI I+ 
Sbjct: 71  ILYKKH-GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDI 128

Query: 79  DQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D +    + K    +  N LE+ + DA+K  F KF ++ +     AN+PY I + L+F  
Sbjct: 129 DSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF-DVCT-----ANIPYKISSPLIFKL 182

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           IS     P ++   L+FQKE  ER+ A     +Y RL++      K T + +++   F P
Sbjct: 183 ISH---RPLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNP 239

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            PKV S ++  IP  +      +    + +  F ++RKTL    KR    N+L  
Sbjct: 240 PPKVDSVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 294


>gi|124486386|ref|YP_001031002.1| dimethyladenosine transferase [Methanocorpusculum labreanum Z]
 gi|124363927|gb|ABN07735.1| dimethyladenosine transferase [Methanocorpusculum labreanum Z]
          Length = 258

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 129/263 (49%), Gaps = 24/263 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D + +  IA+S   + G TV+E+G G G LT  LL  GA  V  +E D    P L
Sbjct: 7   QHFLIDTDAVDFIADSI-PIQGRTVLEVGPGGGVLTAALLERGA-NVRAVELDGTLLPNL 64

Query: 87  KDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +    +     +L I + DA +V    +        +IANLPY+I +++ F  +      
Sbjct: 65  EQRFEEELSTGQLTITRGDASRVPLPAYD------LVIANLPYSISSKITFRLLETG--- 115

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             +E+  L++Q E  +R+ +      YGRLSV+        ++  + P  F P P+V S 
Sbjct: 116 --FETAVLMYQWEFAKRMVSPPGDGEYGRLSVMVQTYADVELILKLPPQAFNPPPEVDSA 173

Query: 205 VIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSLKRLG---GENLLHQ--AGIETN 258
           V+  IPH  P+      +  +  +E F  RRKT++  LK +    GE ++ +    +  +
Sbjct: 174 VVKIIPHEPPVKILNRDVHAVLVRELFSHRRKTIQNGLKGMKSIYGEEVMTKLIGSLPND 233

Query: 259 L---RAENLSIEDFCRITNILTD 278
           L   R E LSI DF  + N LT+
Sbjct: 234 LLGKRPEMLSIVDFIELANRLTN 256


>gi|32477477|ref|NP_870471.1| dimethyladenosine transferase [Rhodopirellula baltica SH 1]
 gi|62900568|sp|Q7UIR4|RSMA_RHOBA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|32448031|emb|CAD77548.1| dimethyladenosine transferase [Rhodopirellula baltica SH 1]
          Length = 284

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 30/280 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P    GQNFL+DLN+++ IA S+       V+EIG G G+LT ++ +  A  ++ +E DQ
Sbjct: 3   PVSKYGQNFLIDLNLVELIARSAEIGPSDIVLEIGTGVGSLTSIMAS-QAGAILTVEIDQ 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR-------------IIANLPY 127
             F +  +  +  P+ +++IQ DALK       +I   IR             ++ANLPY
Sbjct: 62  NLFQLASEELAPFPH-VKMIQGDALKNKSTFRDDIMESIREAKSRLPDDSKFMLVANLPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+ T ++ N +  D  P   + + +  QKE+GER+ A   S  YG LS+      +A ++
Sbjct: 121 NVATPIVSNLLHQDPPP---DRIVVTIQKELGERMVAGPGSKDYGALSIWIQATCRAEIV 177

Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHL--NPIPCCLESLKKITQEAFGKRRKTLRQ----- 239
             + P VF+P PKV S ++   + H   N IP  L+   +  +  F  RRK LR      
Sbjct: 178 RILPPTVFWPRPKVDSAIVRLDVDHERGNAIP-DLKYFHQTVRALFFHRRKFLRSVVISA 236

Query: 240 ---SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
               L +   + +L + G     RAE L++E    +   L
Sbjct: 237 MKGRLDKPAIDEILGRLGHGETARAEELNLEQISDLVEAL 276


>gi|108758752|ref|YP_630281.1| dimethyladenosine transferase [Myxococcus xanthus DK 1622]
 gi|118600879|sp|Q1DAP2|RSMA_MYXXD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|108462632|gb|ABF87817.1| dimethyladenosine transferase [Myxococcus xanthus DK 1622]
          Length = 283

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 132/278 (47%), Gaps = 17/278 (6%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S + IL  + +  K   GQNFL D + L+ IA++        V+E+G G G+LT+ L  
Sbjct: 2   ESPRDILKRHGLRAKYSWGQNFLGDEDALEAIADALNLRADEPVVELGPGLGHLTRFLAA 61

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GAR V  +E+D+    +L+      P  + ++  +A  VDF +       + +  NLPY
Sbjct: 62  TGAR-VTAVERDRDMVMVLE--KEAIPG-VRVVSGNAATVDFAQVAGAPD-VAVAGNLPY 116

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           ++ + +LF  +                QKEV ER+ A+  +  YG L+VL G    A  +
Sbjct: 117 HLTSPILFRVLEQRA---HVSRAVFTLQKEVVERLAAEPGNRDYGLLTVLLGMHYDAENV 173

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR-- 243
             +    F P PKV S V+      +P    ++  +  ++ + +F  RRKTL  S+K   
Sbjct: 174 LTLEAWRFHPPPKVDSAVLRLTRRKSPRAPIIDEARFTRVVKASFAHRRKTLINSIKSDP 233

Query: 244 -LG-GENL---LHQAGIETNLRAENLSIEDFCRITNIL 276
            LG  E L   L  AG++   RAE L+ E+F  I   L
Sbjct: 234 TLGTTETLIAALEAAGVDPQRRAETLTPEEFAAIERAL 271


>gi|171911937|ref|ZP_02927407.1| dimethyladenosine transferase [Verrucomicrobium spinosum DSM 4136]
          Length = 441

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 10/258 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQNFL D  I K IA+         V+EIG G G +T  L+   A K +++EKD 
Sbjct: 14  PKKSLGQNFLHDAGIAKWIADEIKPDGAPLVVEIGPGQGAMTTHLVGRAA-KTLLLEKDN 72

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                LK +  +    +E+   DA + D    F     +++I NLPY++G  +L + ++ 
Sbjct: 73  TLAADLK-VKFEGREDVEVWHGDATRFDLRPLFKFGG-VKVIGNLPYSMGGEILRHVLTP 130

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
            T  P  E++ +L QKEV +R+ A +    YG LS++     +  +   I P VF P PK
Sbjct: 131 PT--PVTEAVFML-QKEVCQRLAADQEDDAYGGLSLVVQHDWEVEIRRIIPPEVFKPRPK 187

Query: 201 VTSTVIHFIPH-LNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIE 256
           V S ++   P     +P    ++  ++ +  F +RRK L+  L     G ++L+      
Sbjct: 188 VDSAIVRLTPRPPGDLPVHDRAVFDRLVRMGFSQRRKQLKNLLPECPGGWDSLMGSLSKP 247

Query: 257 TNLRAENLSIEDFCRITN 274
             +RAE L++ D+  +T 
Sbjct: 248 LTVRAEELTLWDWVALTR 265


>gi|119870378|ref|YP_940330.1| dimethyladenosine transferase [Mycobacterium sp. KMS]
 gi|126437207|ref|YP_001072898.1| dimethyladenosine transferase [Mycobacterium sp. JLS]
 gi|226732600|sp|A3Q5I0|RSMA_MYCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732601|sp|A1UL32|RSMA_MYCSK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119696467|gb|ABL93540.1| dimethyladenosine transferase [Mycobacterium sp. KMS]
 gi|126237007|gb|ABO00408.1| dimethyladenosine transferase [Mycobacterium sp. JLS]
          Length = 294

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 123/265 (46%), Gaps = 19/265 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           P+K  GQNF+ D N +++I  +SG      V+E+G G G+LT  LL  GA  V  +E D 
Sbjct: 22  PRKSFGQNFVHDANTVRRIVSASGVHRHDHVLEVGPGLGSLTLALLDRGA-HVTAVEIDP 80

Query: 80  ---QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              QQ    + D S    NRL ++  D L +      N   P  ++ANLPYN+    L +
Sbjct: 81  LLAQQLPTTIADHSHSEINRLTVLNQDILTLMPSDLEN--QPTALVANLPYNVAVPALLH 138

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++     P   S+ ++ Q EV ER+ A      YG  S    +         +SP VF+
Sbjct: 139 LLAEF---PTIRSVMVMVQAEVAERLAADPGGKDYGVPSAKVRFYGNVRRYGMVSPTVFW 195

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGEN---- 248
           P P+V S ++    +  +P P   +   ++      AF +RRKT R +     G      
Sbjct: 196 PIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAFAQRRKTSRNAFAEWAGSGNESA 255

Query: 249 -LLHQAGIETNLRAENLSIEDFCRI 272
             L  A I+ + R E L+I DF R+
Sbjct: 256 RRLLAASIDPSRRGETLAIADFVRL 280


>gi|218441380|ref|YP_002379709.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424]
 gi|218174108|gb|ACK72841.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424]
          Length = 273

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 21/269 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L +I E++       ++EIG G G LT+ LL      V+ +E D+
Sbjct: 5   PRKRFAQHWLRSEQALDQIIEAAQLQQSDHILEIGPGTGILTRRLLP-EVNSVVAVEIDR 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLFN 136
                L     +  N L ++Q D L +D E     F   + P +++AN+PYNI T L+  
Sbjct: 64  DLCQKLGKSLGKLDNFL-LLQGDILSLDLESHLVNFPKFNHPHKVVANIPYNI-TGLILE 121

Query: 137 WISADTWPPF---WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           ++      P    +E + LL QKEV ER+TA+  +  YG LS+   +  +   + ++   
Sbjct: 122 YLLGTIAEPTQKNYELIVLLIQKEVAERLTAKPGTKAYGALSIRVQYLAQCEWICEVPAR 181

Query: 194 VFFPSPKVTSTVIHFIPHL--NPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN- 248
            F+P PKV S V+   P L  NP   P  L++L K+    F  RRK L  +L  +   + 
Sbjct: 182 AFYPPPKVDSAVVRLRPQLVSNPANNPKQLDTLIKL---GFANRRKMLYNNLTSVIDRDQ 238

Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITN 274
              LL +  I    RAE+LS+E +   +N
Sbjct: 239 LTQLLEKLHINPQCRAEDLSLEQWIEFSN 267


>gi|193214866|ref|YP_001996065.1| dimethyladenosine transferase [Chloroherpeton thalassium ATCC
           35110]
 gi|193088343|gb|ACF13618.1| dimethyladenosine transferase [Chloroherpeton thalassium ATCC
           35110]
          Length = 256

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 125/251 (49%), Gaps = 15/251 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+D NI +KI  S+   +   VIEIG G G+LT+++  +  R    +E D +
Sbjct: 13  KKSFGQNFLVDSNISRKIVRSAEIAEHDNVIEIGPGFGSLTKIISEVMPR-FTCVELDHK 71

Query: 82  FFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               L D IS + PN + +I DD LKVD  K    + P+ ++ N+PY I + +LF  I  
Sbjct: 72  ----LADFISREFPN-VNLISDDFLKVDLAKLAE-TKPLTVLGNIPYAITSPILFKLIEN 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   L+ Q EV  R+TA+  +  YG L+V      K   +F +   VF P P+
Sbjct: 126 RAH---IDRAVLMMQDEVARRLTAEPKTKQYGILAVQLQAFGKPEYLFKVPKTVFKPRPE 182

Query: 201 VTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S V+  I    P+     S  +   + AF  RRKTL  +LK  G  ++   A      
Sbjct: 183 VESAVVR-IDFSKPVEIKNPSEFQTFVRTAFRMRRKTLANNLK--GKYDVSALAPEVLKK 239

Query: 260 RAENLSIEDFC 270
           RAE  S+ +F 
Sbjct: 240 RAEAFSVTEFV 250


>gi|317969764|ref|ZP_07971154.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Synechococcus sp. CB0205]
          Length = 278

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 16/230 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D ++L +I +++      TV+E+G G G LT+ LL   AR V  +E D+ 
Sbjct: 9   RKRFGQHWLKDQSVLDRILQAAELTAADTVLEVGPGRGALTERLLESSARAVCAVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++    +P R  + + D L V+  +         ++AN+PYNI   LL   +   
Sbjct: 69  LVSGLQERFGANP-RFSLTEGDVLAVELPEATA------VVANIPYNITGPLLERLVGRL 121

Query: 142 TWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             P    +  L LL Q+EVGERI A+  S  Y  LSV      + + +  + P  F P P
Sbjct: 122 DRPALQPYRRLVLLVQQEVGERIRARPGSSAYSALSVRMQLLARCSTVCPVPPRCFQPPP 181

Query: 200 KVTSTVIHFIP-----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           KV S V+   P      L+  P   ++++ + +  F  RRK LR +L  L
Sbjct: 182 KVMSEVVALDPLPLEQRLD--PALAKTVEMLLRRCFAARRKMLRNTLSGL 229


>gi|255533693|ref|YP_003094065.1| dimethyladenosine transferase [Pedobacter heparinus DSM 2366]
 gi|255346677|gb|ACU06003.1| dimethyladenosine transferase [Pedobacter heparinus DSM 2366]
          Length = 260

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 127/258 (49%), Gaps = 10/258 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK++GQ+FL D NI  KI       D    V+E+G G G L+ +LL     +  +I+ D 
Sbjct: 7   KKHLGQHFLTDKNIAAKIVNGLVHTDKYKQVLEVGPGMGILSDLLLERKDLETYLIDIDV 66

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           + +  L+    Q  +RL  I  D L ++    F       II N PYNI +++LF  +  
Sbjct: 67  ESYHFLQQKYPQLGSRL--INGDFLALNLSDIF--KDKYAIIGNFPYNISSQILFKILEN 122

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
            +       +  +FQKEV ER  +++ +  YG LSVL         +F + P  F P PK
Sbjct: 123 RSSVV---EMVGMFQKEVAERCASKEGTKDYGILSVLIQAYYHIEYLFTVKPGTFNPPPK 179

Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S VI    + +  +PC  +   +  +  F +RRKTLR +L  +  ++ + +     + 
Sbjct: 180 VNSGVIRLSRNAVETLPCDEKLFWRTVKAGFNQRRKTLRNALSGIIPKDKMDEHPF-FDK 238

Query: 260 RAENLSIEDFCRITNILT 277
           RAE LS+ DF  +T+ L 
Sbjct: 239 RAEQLSVNDFIVLTSHLA 256


>gi|302530292|ref|ZP_07282634.1| dimethyladenosine transferase [Streptomyces sp. AA4]
 gi|302439187|gb|EFL11003.1| dimethyladenosine transferase [Streptomyces sp. AA4]
          Length = 280

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 133/267 (49%), Gaps = 17/267 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D N +++I E  G   G  V+E+G G G+LT  LL  G
Sbjct: 10  IRGLADELDVRPTKKLGQNFVHDPNTVRRIVELGGVRPGDVVLEVGPGLGSLTLGLLAAG 69

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V+ +E D      L + ++ + P   +RL ++  DAL+V        + P+ I+ANL
Sbjct: 70  A-QVVAVEIDPVLAARLPRTVAERAPEAADRLTVVGADALRVRAADL--PAEPVSIVANL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++     P   S  ++ Q EV +R+ A   S  YG  SV   W   A 
Sbjct: 127 PYNVAVPVVLHLLAEL---PSLRSGLVMVQTEVADRMAAGPGSRTYGVPSVKLAWYGPAR 183

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
            +  +   VF+P P V S ++ F    +P+     + L  +   AF +RRKTLR +L   
Sbjct: 184 KVAAVPRAVFWPVPNVDSALVSFT-RTDPVAGVDRARLFAVVDAAFSQRRKTLRAALAGW 242

Query: 245 GGE-----NLLHQAGIETNLRAENLSI 266
            G       LL +AGI+   R E L +
Sbjct: 243 AGSAERAGELLAEAGIDPKTRGEQLDV 269


>gi|242556502|pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
           Methanocaldococcus Jannaschi
 gi|242556503|pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
           Methanocaldococcus Jannaschi
          Length = 265

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 14/218 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            Q FL+D N + K  ES+       V+EIG G G LT+ L    A+KV VIE D+   P 
Sbjct: 2   AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPY 60

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
              +   + N +EII  DALKVD  K  FN     +++ANLPY I + + F  I      
Sbjct: 61  ANKLKELY-NNIEIIWGDALKVDLNKLDFN-----KVVANLPYQISSPITFKLIKRG--- 111

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             ++   L++Q E  +R+ A++ +  YGRLSV    R    ++  + P  F+P PKV S 
Sbjct: 112 --FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSA 169

Query: 205 VIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241
           ++   P+        E+      +  F  R K++R++L
Sbjct: 170 IVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKAL 207


>gi|297618729|ref|YP_003706834.1| dimethyladenosine transferase [Methanococcus voltae A3]
 gi|297377706|gb|ADI35861.1| dimethyladenosine transferase [Methanococcus voltae A3]
          Length = 275

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 14/222 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ FL D N +KK    +   +   V+EIG G G LT+ L  + A+KV VIE D++ 
Sbjct: 14  KKLGQCFLKDKNFVKKAINRANLNNDDIVLEIGLGEGVLTKELAKV-AKKVYVIELDKRL 72

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141
                ++  ++PN + II +DALKVD +   FN     +I+ANLPY I + + F ++   
Sbjct: 73  EIFANEVIKEYPN-VSIIWEDALKVDLDSLDFN-----KIVANLPYQISSPITFKFLERK 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                ++   L++Q E  +R+  ++++  YGRLSV   +     M+  + P  F P PKV
Sbjct: 127 KG---FDLAILMYQYEFAKRMAGKEDTKEYGRLSVAVQYSADVKMICKVPPTAFSPKPKV 183

Query: 202 TSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL 241
            S ++  +   NP    L+    K + +  F  R KT+ ++L
Sbjct: 184 DSAIVSLVKK-NPEYDVLDEKMFKNLLKALFQHRNKTVGKAL 224


>gi|284046698|ref|YP_003397038.1| dimethyladenosine transferase [Conexibacter woesei DSM 14684]
 gi|283950919|gb|ADB53663.1| dimethyladenosine transferase [Conexibacter woesei DSM 14684]
          Length = 273

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 113/255 (44%), Gaps = 15/255 (5%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           + I P + +GQNFL+D NIL  IA ++       V+EIG G G L++ L    A  V V+
Sbjct: 15  FGIRPNRELGQNFLIDSNILDVIARAAELAPEDVVLEIGGGLGVLSEHLAERAA-HVHVV 73

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+     L D    H     +   DA+++D         P +++ANLPY I    +  
Sbjct: 74  EIDRGLEDALHDALDPHAATTTLHMGDAMQLDLAALH--PQPTKVVANLPYGIAAGAILR 131

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +        W     + QKEVGER  A+  +  YG  SV+        ++  +S  VFF
Sbjct: 132 TVEQLPHATGW---VAMVQKEVGERFAARPATDAYGIPSVIAQLACDVRVLRPVSRRVFF 188

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLL 250
           P P V S ++         P    +L+   Q AF  RRKTL +S    G          L
Sbjct: 189 PVPNVDSVLVGL---ERTGPAAPRALRSFVQGAFAHRRKTLAKSAGIAGVAAPDATRAAL 245

Query: 251 HQAGIETNLRAENLS 265
              G   ++RAE LS
Sbjct: 246 EALGHPADVRAERLS 260


>gi|153952508|ref|YP_001398990.1| dimethyladenosine transferase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939954|gb|ABS44695.1| dimethyladenosine transferase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 266

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 18/264 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   K   I+ D  
Sbjct: 5   KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138
             PILK    +    LE  + + +  D  + FN S    P  ++ANLPY + + ++   +
Sbjct: 62  LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      L ++ QKE+ E+  A++ +  +  L VL+    +  ++FD+ P  F P 
Sbjct: 119 EDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174

Query: 199 PKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQAG 254
           PKV S V+  I     N + C +E+ K   ++ F   RK L  +LK  ++    +L   G
Sbjct: 175 PKVISAVMSLIKTKDFNEL-CEIENFKNFLKDCFKAPRKQLLGNLKTYKVKVLEVLSILG 233

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           ++ N+R   + ++ + +I + L D
Sbjct: 234 LKENIRPHEICVDSYLKIYDKLKD 257


>gi|57640834|ref|YP_183312.1| dimethyladenosine transferase [Thermococcus kodakarensis KOD1]
 gi|62900463|sp|Q5JI54|RSMA_PYRKO RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|57159158|dbj|BAD85088.1| dimethyladenosine transferase [Thermococcus kodakarensis KOD1]
          Length = 279

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 16/232 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +I+  Y + P + +GQNFL+  +I+++  E +   +  TV+EIG G G LT  L +  A 
Sbjct: 7   SIIYKYNLHPNRDLGQNFLIVPDIIERNIERAEVGEKDTVLEIGPGLGVLTDPL-SKRAG 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV  IEKD +   IL+      PN +EII+ DALKV++ +F       ++++NLPY I +
Sbjct: 66  KVYAIEKDCRIVEILRR-EYNWPN-VEIIEGDALKVEWPEFN------KMVSNLPYQISS 117

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            + F  +S +     +E   L+FQ E  ER+ A+    +Y RLS++   + +A ++  I 
Sbjct: 118 PVTFKLLSRE-----FERAVLIFQLEFAERMVAKPGDKNYSRLSLMVRAKARAELVERIG 172

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
              F+P PKV S V+   P   P    ++  + + +  F  RR T+  +LK+
Sbjct: 173 KGAFWPRPKVDSAVVVLEP--KPPEERIDLNENLVKALFQHRRSTVSAALKK 222


>gi|296109078|ref|YP_003616027.1| dimethyladenosine transferase [Methanocaldococcus infernus ME]
 gi|295433892|gb|ADG13063.1| dimethyladenosine transferase [Methanocaldococcus infernus ME]
          Length = 269

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 13/221 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL+D N + K  E +   +   V+EIG G G LT+ L    A+KV VIE D+ 
Sbjct: 5   KKSLGQHFLVDKNFVYKAIEGANLKEDDKVLEIGLGKGILTEELCK-RAKKVYVIEIDKN 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISA 140
                  + +++ N L II DDALKV+ ++  +N     +++ANLPY I + + F  +  
Sbjct: 64  LESFANSLINKYKN-LNIIWDDALKVNLKEIDYN-----KVVANLPYQISSPITFKLLDR 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 ++   L++Q E  +R+ A++ +  YGRLSV    +  A ++  + P  F+P PK
Sbjct: 118 G-----FDLSVLMYQLEFAKRMIAKEGTKDYGRLSVSLQAQANAEILCKVPPSAFYPRPK 172

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           V S ++   PH        E    + + AF  R K L+++L
Sbjct: 173 VWSALVKIEPHNKYKILNKEFFNNLVRGAFQHRNKFLKKAL 213


>gi|297797749|ref|XP_002866759.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297312594|gb|EFH43018.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 376

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 104/217 (47%), Gaps = 12/217 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL  I   S      TV+EIG G GNLT  LL   A+ V+ +E D++ 
Sbjct: 58  KSKGQHLLTNTRILDAIVRCSDVRPTDTVLEIGPGTGNLTMKLLE-AAQDVVAVELDKRM 116

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL+   S H   ++L IIQ D LK DF +F        ++AN+PYNI + L+   +  
Sbjct: 117 VEILRKRVSDHGFAHKLTIIQKDVLKTDFPQF------DLVVANIPYNISSPLVAKLVYG 170

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 + S TLL QKE   R+ A      + RL+V          + D+S   F P PK
Sbjct: 171 SNT---FRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVKFVMDVSKREFVPPPK 227

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           V S+V+   P        ++     T+  FGK+ KTL
Sbjct: 228 VDSSVVMITPKEIIPDVNVQEWLAFTRTCFGKKNKTL 264


>gi|149922616|ref|ZP_01911044.1| dimethyladenosine transferase [Plesiocystis pacifica SIR-1]
 gi|149816502|gb|EDM75999.1| dimethyladenosine transferase [Plesiocystis pacifica SIR-1]
          Length = 301

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 136/282 (48%), Gaps = 19/282 (6%)

Query: 1   MTMNNKS-HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           MT++ ++  S K +L+ + + P+K  GQNFL    +  +IA ++G+  G TV+EIGAG G
Sbjct: 1   MTIDLRAIPSPKQLLARHGLAPRKSWGQNFLHAFEVHLEIAAAAGAGPGSTVVEIGAGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNI 115
            LT  LL  GA +V  IE+D+    +L+      P    + + DA+K D+          
Sbjct: 61  TLTAHLLAAGA-EVDAIERDRDLCAVLRTELGALPG-FRLHEADAVKFDYGAHARALLEA 118

Query: 116 SSP-IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
             P   I+ NLPY +   LLF  +  D     W    ++ QKEV +R+ +   +  YG  
Sbjct: 119 GKPRPAIVGNLPYQLTGALLFALLEYDAVTGPW---IVMVQKEVADRLCSPPGNKRYGGA 175

Query: 175 SVLTGWRTKATMMFDISPH-VFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFG 231
           +   G R +A      +P   F P P+V S VI   P   P+    +  +   + +  F 
Sbjct: 176 TAALG-RVRAIRKVCSAPAGCFLPPPRVDSAVIRLDPRPEPLGEVGDPKAYLHLVRTCFQ 234

Query: 232 KRRKTLRQSLKRLG----GENLLHQAGIETNLRAENLSIEDF 269
           +RRKTL  +L  +G     +  +  AG++  +R E L   +F
Sbjct: 235 RRRKTLANALLGVGDKASAQRWIAAAGLDPKIRPERLGPAEF 276


>gi|291567875|dbj|BAI90147.1| dimethyladenosine transferase [Arthrospira platensis NIES-39]
          Length = 274

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 135/277 (48%), Gaps = 25/277 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L  I E++       ++EIG G G LT+ LL   A  V+ IE D+
Sbjct: 6   PRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLP-KASSVVAIEIDR 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRL--- 133
                L     +  N L ++Q D L  D       F     P +++AN+PYNI   +   
Sbjct: 65  DLCVQLAKKFGKIDNFL-LLQGDILSFDLNAHLSAFPQFQHPNKVVANIPYNITGPIIEG 123

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   I+     PF +++ LL QKEVG+R+ A+ +S  +G LSV   +  +   +  +   
Sbjct: 124 LLGTIAKPALKPF-DAIVLLVQKEVGDRLCAKPSSKAFGALSVRVQYLAECDWICHVPAK 182

Query: 194 VFFPSPKVTSTVIHFIPHLNPI------PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            F+P PKV S V+   P   PI      P  LE+L K+    F  RRK LR +LK     
Sbjct: 183 AFYPPPKVDSAVVRLRPR--PIASPAQNPQLLETLVKL---GFSTRRKMLRNNLKSQVEP 237

Query: 248 NLLHQ----AGIETNLRAENLSIEDFCRITNILTDNQ 280
            +L+Q      I   +RAE+LS++ + +++N+L   Q
Sbjct: 238 QILNQLLETLDINPQVRAEDLSLQQWVQLSNLLLAPQ 274


>gi|258654668|ref|YP_003203824.1| dimethyladenosine transferase [Nakamurella multipartita DSM 44233]
 gi|258557893|gb|ACV80835.1| dimethyladenosine transferase [Nakamurella multipartita DSM 44233]
          Length = 302

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P K +GQNF+ D N +++I  ++       V+E+G G G+LT + L   A  V  +E D 
Sbjct: 26  PTKTLGQNFVHDGNTVRRIVAAADLRSTDHVLEVGPGLGSLT-LGLVDAAAAVTAVEIDP 84

Query: 81  QFFPILKDISSQH-PNR---LEIIQDDALKVDFEKF-------FNISSPIRIIANLPYNI 129
           +   +L      H P R   L +I  DAL +  ++           + P  ++ANLPYN+
Sbjct: 85  RLAALLPTTVRAHAPGRYQALNVITADALTITADRLALTDPDRMAPADPTALVANLPYNV 144

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              ++ + ++    P    +L ++ Q EV +R+ A   S  YG  S    W  +A     
Sbjct: 145 AVPVILHLLA--EVPTLRRAL-VMVQAEVADRLAADPGSKTYGVPSAKLAWYGRAHRAGS 201

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--- 246
           +S  VF+P P V S ++ F            ++  +   AF +RRKTLR +L    G   
Sbjct: 202 VSRTVFWPVPGVDSALVAFDRSPTARTGDRSAVFAVIDAAFAQRRKTLRAALADWAGSPA 261

Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITN 274
             E +L +AGI+ + R E L I +F RI  
Sbjct: 262 FAEQILTRAGIDPSARGEVLGIAEFTRIAQ 291


>gi|198433957|ref|XP_002130387.1| PREDICTED: similar to transcription factor B1, mitochondrial [Ciona
           intestinalis]
          Length = 384

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 127/292 (43%), Gaps = 26/292 (8%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKK-IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +L  Y +  +K + QNFLLD  I  + +   +  L G  V E+G GPG +T+ +L     
Sbjct: 35  LLKMYNVRARKQLSQNFLLDPLITNRFVLCGAKDLAGHHVCEVGPGPGPITRSILQRKPE 94

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRII 122
           ++ V+EKD +F P+LK ++    +R+ I+  D LK D  + F           S P  + 
Sbjct: 95  RLTVVEKDHRFLPMLKYVADVSNDRMTIVHGDILKYDLSQCFPQELAKDWHKASPPFIVF 154

Query: 123 ANLPYNIGTRLLFNWIS----ADTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            NLP+N+   L+F W       D         L L FQ+EV ER  AQ       RLSV 
Sbjct: 155 GNLPFNVSLPLIFKWFEQISRKDGMFKLGRIPLVLTFQREVVERFLAQTGDKQRCRLSVS 214

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKT 236
                     F I+   F P PKV   V+  +P     I    + +  + +    ++ K 
Sbjct: 215 AQNFCDIDYKFIIAGGSFVPPPKVEVGVVKIVPKKTFDINLPFKKIDYVVKHTMHRKSKY 274

Query: 237 LRQSLKRLGG-------ENLLHQAGIETNLRA---ENLSIEDFCRITNILTD 278
            + S+K +         + +  ++G++   R+   ENL   D C     + D
Sbjct: 275 CKHSVKTMFPPKRSDLVDEIFRKSGVDPLTRSNELENLHFRDLCYAYEEIAD 326


>gi|163783970|ref|ZP_02178937.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880766|gb|EDP74303.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 254

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 122/252 (48%), Gaps = 11/252 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQ+ L+   ++ KI ++    L+ I ++EIG G G LTQ +L    +K+  IE D+
Sbjct: 7   KKKFGQHLLISEGVISKIVDTIDVKLEDI-IVEIGVGTGQLTQEILKRNPKKLYGIEIDE 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +PI+++   +  N  E+I+ D  +V+  +    +  I+++ NLPYN+ + +L N +  
Sbjct: 66  TAYPIIEERFKEFEN-FELIKKDFFEVNLYEIAE-NQKIKLVGNLPYNVSSLILINTV-- 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             +    E    + QKEV E++T +  + +Y  L++      +   +  +    F P PK
Sbjct: 122 -FYIDIIERTVFMLQKEVAEKLTTKPKTKNYTFLTIFIQTFFEVEYVMSVPARFFSPPPK 180

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           V S V+   P  +      ++ K      F  RRK LR  +     EN+L    I    R
Sbjct: 181 VISAVVRMFPKKDYPKIDKKNYKNFVSSLFSNRRKMLRTKI----DENILKSLNIPPTAR 236

Query: 261 AENLSIEDFCRI 272
            E L  EDF R+
Sbjct: 237 VEELKPEDFLRL 248


>gi|117927388|ref|YP_871939.1| dimethyladenosine transferase [Acidothermus cellulolyticus 11B]
 gi|166221640|sp|A0LR93|RSMA_ACIC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|117647851|gb|ABK51953.1| dimethyladenosine transferase [Acidothermus cellulolyticus 11B]
          Length = 290

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 136/281 (48%), Gaps = 24/281 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     + P+K  GQ+F++D  +L+KIA  +        +EIG G G+LT +LL
Sbjct: 16  AADIRELARSAGVRPRKTFGQHFVVDPGVLRKIARYAELSSEDIALEIGPGFGSLTLVLL 75

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRII 122
            L   +++ +E D+    +L + I  + P   +RL ++  D L++          P  ++
Sbjct: 76  PLVR-RLLAVEIDRVLAAVLPETIRRRCPAFADRLVVVHGDVLRLTTLP----DDPTVLV 130

Query: 123 ANLPYNIGTRLL---FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ANLPYN+    +   F   S  T         ++ Q+EV ER+ A   SP YG  S+   
Sbjct: 131 ANLPYNVAVPAVLRVFERFSTVT------RTVIMVQREVAERLCADPGSPAYGAPSIKLR 184

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLR 238
           W  +A ++  +S  VF+P P+V S V+       P+P     ++  +   AF +RRK LR
Sbjct: 185 WYGRARIVGSVSADVFWPRPQVESAVVRIDRQPPPVPGVDRAAVFAVIDAAFAQRRKMLR 244

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           ++L    G     E  +  AG+    R E L++ DF R+  
Sbjct: 245 RALSGWAGSAQAAEERILAAGLRPTDRGEALTLADFIRLAQ 285


>gi|254444818|ref|ZP_05058294.1| dimethyladenosine transferase [Verrucomicrobiae bacterium DG1235]
 gi|198259126|gb|EDY83434.1| dimethyladenosine transferase [Verrucomicrobiae bacterium DG1235]
          Length = 271

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQNFL+D NI++K  E +    G  V+EIG G G LT+ LL  GA  V  +E D 
Sbjct: 19  PKKQLGQNFLIDGNIVRKSLELAQVTPGDHVVEIGPGLGTLTRALLDAGA-IVHAVEFDP 77

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                +  +++  PN L +I+ DAL           +  +I+ANLPY I T     W++A
Sbjct: 78  TLGAHVARLAADSPN-LHLIKGDALDHPLGD-LPPDTEYKIVANLPYAIST----PWMAA 131

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +TL+ QKE  +R  A+  +  +G +S+            D+S   F+P P 
Sbjct: 132 VLESQLPSVMTLMLQKEAAQRYAAKAGTKQFGAISIFLHAAFDILPGHDVSGSCFYPKPD 191

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE------NLLHQAG 254
           V ST++H      P     ES++ I +E F +RRK +   L++   +      N L   G
Sbjct: 192 VGSTLLHLRRKTTPHRFHPESIQLI-REVFQQRRKQISSLLRKAKTDAATRWLNSLTNIG 250

Query: 255 IETNLRAENLSIEDFCRI 272
           I+   R E +  E + ++
Sbjct: 251 IDPTARPEQIDAEKWIQL 268


>gi|226492680|ref|NP_001151385.1| LOC100285018 [Zea mays]
 gi|195646350|gb|ACG42643.1| dimethyladenosine transferase [Zea mays]
          Length = 337

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 22/286 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++++ S  + +P+K +GQN+ L+  + +++  ++G  DG  V+EIG G G+LT  LL  
Sbjct: 55  TIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEDGDVVLEIGPGTGSLTSALLQA 114

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPI 119
           GA  V  +EKD+    ++KD       +L++I++D  K            EK+       
Sbjct: 115 GA-TVFAVEKDKHMATLVKDRFGS-TEQLKVIEEDITKFHIRSHFLPFMKEKYGATKKLA 172

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLT 178
           ++ +NLP+N+ T ++   +        +  + L+ Q E   R   A   SP Y  ++V  
Sbjct: 173 KVASNLPFNVSTEVVKLLL---PMGDVFSVVVLMLQDETAVRFADASIQSPEYRSINVFV 229

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRK 235
            + ++    F +    FFP PKV   VI F + +    P     +S   +   AF  +RK
Sbjct: 230 DFYSEPEYKFRVDRENFFPRPKVDGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRK 289

Query: 236 TLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            LR+SL+ +      E  L   G+    R  +L ++DF R+ N L 
Sbjct: 290 MLRKSLQHICSSSDIEAALDNIGLPVTARPSDLILDDFVRLHNHLA 335


>gi|123455450|ref|XP_001315469.1| dimethyladenosine transferase family protein [Trichomonas vaginalis
           G3]
 gi|121898147|gb|EAY03246.1| dimethyladenosine transferase family protein [Trichomonas vaginalis
           G3]
          Length = 295

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 98/187 (52%), Gaps = 11/187 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQN L    ++K I ++     G  ++EIG G GN+T+ +L+    +VI IEKDQ+   
Sbjct: 21  LGQNILRSKVVVKNIVDAGEPRPGDKILEIGPGNGNMTEEMLSREGIEVIAIEKDQRMCV 80

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            LK    +HPN L II  D L VD  +F         I+N+PYNI + ++F  ++     
Sbjct: 81  ELKKKFPRHPN-LRIINADVLSVDLPEF------DLCISNIPYNISSAIVFKLLAR---- 129

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
           P +    L+ QKE GERI A+     +GRL++ T       ++ ++S   F P PKV S 
Sbjct: 130 PTFRRTVLMVQKEFGERIVARPGKDGWGRLAINTQLYASVKLVMNVSRKNFVPPPKVDSI 189

Query: 205 VIHFIPH 211
           V+   P 
Sbjct: 190 VVSIQPR 196


>gi|239941894|ref|ZP_04693831.1| dimethyladenosine transferase [Streptomyces roseosporus NRRL 15998]
 gi|239988357|ref|ZP_04709021.1| dimethyladenosine transferase [Streptomyces roseosporus NRRL 11379]
 gi|291445344|ref|ZP_06584734.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291348291|gb|EFE75195.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 291

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 130/276 (47%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL   
Sbjct: 15  IRDLAATLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 73

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +VI +E D      L   + ++ P   +R  ++  DA+ V         +P  ++ANL
Sbjct: 74  ADRVIAVEIDDVLAAALPATVQARMPERADRFALVHSDAMLV---TELPGPAPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L   +  + +P    +L ++ Q EV +R+ A+  +  YG  SV   W     
Sbjct: 131 PYNVAVPVLLTML--ERFPSIERTL-VMVQSEVADRLAARPGNKVYGVPSVKANWYADVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLK- 242
               I  +VF+P+P V S ++  +    P+        +  +   AF +RRKTLR +L  
Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLVRRTEPLATKASRAEVFAVVDAAFAQRRKTLRAALAG 247

Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
                   E  L  AGI    R E L++E+F  I  
Sbjct: 248 WAGSAPAAEAALVAAGISPQARGEALTVEEFAAIAE 283


>gi|237737101|ref|ZP_04567582.1| dimethyladenosine transferase [Fusobacterium mortiferum ATCC 9817]
 gi|229420963|gb|EEO36010.1| dimethyladenosine transferase [Fusobacterium mortiferum ATCC 9817]
          Length = 264

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 22  KKYMGQNFLLD-LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL D   +L+KI E S      TV+EIG G G LT +LL   A+KV+ +E D+
Sbjct: 6   KKKFGQNFLTDQREVLRKIMEVSNVQAEDTVLEIGPGEGALTALLLD-TAKKVVTVEIDR 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               IL+     +P +  ++ +D L+ D   +  + +  +++AN+PY I + ++   I  
Sbjct: 65  DLEKILRKKFDGNP-KYTLVMNDVLETDLRAY--VGAGTKVVANIPYYITSPIINKLIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  + + ++ QKEV ER+ A+K       L++   +  +A  +F I    F P PK
Sbjct: 122 ---RDVIDEIYIMVQKEVAERVCAKKGKER-SVLTLAVEYYGEAEYLFTIPKEFFTPIPK 177

Query: 201 VTSTVI--------HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248
           V S  +         +I  ++      ++  K  +  F  +RK L  +   LG       
Sbjct: 178 VDSAFMSIKLYKDNRYINQVDE-----DTFFKYVKAGFSNKRKNLLNNFSTLGYSKDELR 232

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276
            +L +A I    RAENLSIEDF R+ +I 
Sbjct: 233 VILAKAEIPETERAENLSIEDFIRLISIF 261


>gi|71028934|ref|XP_764110.1| dimethyladenosine transferase [Theileria parva strain Muguga]
 gi|68351064|gb|EAN31827.1| dimethyladenosine transferase, putative [Theileria parva]
          Length = 388

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 119/236 (50%), Gaps = 21/236 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KKY GQ+ L +  +L KI +++      TV+EIG G GN T  L+TL A+KV+ I+ 
Sbjct: 69  IFVKKY-GQHMLKNPGVLDKIIKAAEIRPTDTVLEIGPGTGNWTVRLVTL-AKKVVAIDV 126

Query: 79  DQQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D +    +K+   Q     LE+I+ DAL+  F KF +I      +ANLP+ I +  +F  
Sbjct: 127 DARMISEVKNRCFQLGYTNLEVIEADALRTTFPKF-DIC-----MANLPFQISSPFIFKL 180

Query: 138 ISADTWPPF----------WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +S    P F           ES  L+FQKE  ER+ A  N   YGRL++ T      T +
Sbjct: 181 LSHR--PLFRYLFHYYYFALESAILVFQKEFAERLLASTNDDKYGRLAINTRLFCTVTRI 238

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             +S   F P PKV S V+  +P   P+         + +  F ++R+TLR   K+
Sbjct: 239 CKVSAGSFNPPPKVESMVVKIVPREQPLVVDFGEWDGMIRICFSRKRRTLRSLFKK 294


>gi|237752126|ref|ZP_04582606.1| dimethyladenosine transferase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376368|gb|EEO26459.1| dimethyladenosine transferase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 276

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 138/276 (50%), Gaps = 33/276 (11%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           +I+ KK+ GQNFL + NIL  I +S   ++  I +IEIGAG G+LT  LL+LG   +   
Sbjct: 17  QILAKKHFGQNFLNNENILNAIIQSIPKIEKNIELIEIGAGLGDLTNKLLSLG--NITAY 74

Query: 77  EKDQQFFPILKD----------ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
           E D++  P L++          ++ +  + LEI + ++L+   + +F       ++ANLP
Sbjct: 75  EVDKELVPYLQERFKSALEFGHLNLEIGDVLEIWKGESLRK--QAYF-------LVANLP 125

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T L+   I      P      ++ QKEV ++  AQ    ++  LSVL      AT+
Sbjct: 126 YYIATLLVIKTIK----DPLSTGCVVMTQKEVAQKFCAQCGESNFSALSVLAQSVGMATL 181

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL 244
           +FD+ P  F P PKV S+V       NP P    LE L+ + + AF   RKT+  +L + 
Sbjct: 182 LFDVPPTAFVPQPKVISSVFLLQKIANP-PSFKDLEHLESLLKVAFSAPRKTILNNLSKA 240

Query: 245 GGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +    + L    I  + R   +  +D+ R+  IL
Sbjct: 241 YPKQAILDALESLQIAPSKRPHEIDTQDYHRLLKIL 276


>gi|308234122|ref|ZP_07664859.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829]
 gi|328943654|ref|ZP_08241119.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829]
 gi|327491623|gb|EGF23397.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829]
          Length = 315

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 22/282 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +LS + +  K  +GQNFL++ +++  I E +       V+EIG G G L+  LL    ++
Sbjct: 15  VLSSFGLYTKHRLGQNFLIEDSVIGHILELAHVQADDYVVEIGPGIGTLSCALLP-RVKR 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNI-----SSPIRIIA 123
           +  IE D+    +L +   ++ ++ E+I  DALKV  +    K F+      +  +++IA
Sbjct: 74  LCAIEADRVLPDVLAETLGEYADKFELISADALKVSADEIRAKLFSADRDGNACSVKLIA 133

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I    +  ++      P    L ++ Q EV +R+ AQ     YG  S       +
Sbjct: 134 NLPYQIAATAVLRYLE---MLPELNELIVMVQSEVAQRMAAQPAHKLYGAYSAKLALYAE 190

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC----LESLKKITQEAFGKRRKTLRQ 239
               F ++P  FFP+P V S VIH          C       + ++   AF +RRKTL  
Sbjct: 191 CVGGFKVAPSNFFPAPHVMSEVIHIQRRSADKQLCKAYERAYVARVIDAAFSQRRKTLLN 250

Query: 240 SLKRLG--GENLLHQAG---IETNLRAENLSIEDFCRITNIL 276
            L   G   +++L       I+ + R E L+   F  +   L
Sbjct: 251 CLCACGFDKQDVLTACDTIQIDVHERGEKLTPSQFVELARAL 292


>gi|332158063|ref|YP_004423342.1| dimethyladenosine transferase [Pyrococcus sp. NA2]
 gi|331033526|gb|AEC51338.1| dimethyladenosine transferase [Pyrococcus sp. NA2]
          Length = 271

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 129/243 (53%), Gaps = 23/243 (9%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +LS Y I PK  +GQ+F++  ++++K  E++   +   V+EIG G G LT  L    A+K
Sbjct: 8   LLSKYGIRPKDTIGQHFIIVEDVIRKAVETADVNEKDVVLEIGPGLGFLTNELAK-RAKK 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   ILK+      N +EII+ DA+K+++ +F       ++++N+PY I + 
Sbjct: 67  VYAIELDRKMIQILKN--EYKWNNVEIIEGDAIKLEWPEFN------KVVSNIPYQISSP 118

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
             F  +  D     +E   +++Q E   R+TA+  S +Y RLS++T       ++  I  
Sbjct: 119 FTFKLLKKD-----FELAVVMYQLEFALRMTARPGSKNYSRLSLMTQALADVEIVMKIGR 173

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
             F+P PKV S ++   P  + +    E  + + +  F  RRKT+ ++LK     + +H 
Sbjct: 174 GAFYPRPKVDSALVVIRPRKDKV----ELNENLVKALFQHRRKTVSRALK-----DSIHM 224

Query: 253 AGI 255
            GI
Sbjct: 225 LGI 227


>gi|170782640|ref|YP_001710974.1| dimethyladenosine transferase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157210|emb|CAQ02393.1| putative dimethyladenosine transferase (drug resistance)
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 305

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 130/270 (48%), Gaps = 27/270 (10%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P K +GQNF++D N +++I   +    G  V+E+G G G+LT  LL  GA  V+ +E 
Sbjct: 34  VAPTKKLGQNFVIDANTVRRIVRVARVEAGTHVVEVGPGLGSLTLGLLETGA-SVVAVEI 92

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDA-LKVDFEKFFNISS----PIRIIANLPYNIGTRL 133
           D +       ++ Q P  + + Q DA L V  E    ++     P  ++ANLPYN+   +
Sbjct: 93  DGR-------LAEQLPITVALYQPDAVLTVVHEDALRVAELPGDPTALVANLPYNVSVPV 145

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L + +      P   +  ++ Q EVG RI A   S  YG  SV   W         +S  
Sbjct: 146 LLHLLEHF---PAIRTGVVMVQAEVGHRIAAAPGSKVYGAPSVKAAWYGAWRTAGQVSRQ 202

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKR-LGGEN 248
           VF+P P V S ++ F  H  P     E L+K    I   AF +RRK LRQ+L   LGG  
Sbjct: 203 VFWPVPNVDSVLVAFERHAEPFAS--EELRKRTFTIVDAAFQQRRKMLRQALAELLGGSE 260

Query: 249 ----LLHQAGIETNLRAENLSIEDFCRITN 274
               LL   G+    R E LS+ D+ R+ +
Sbjct: 261 AASALLEAGGVAPTSRGEQLSVHDYLRVAH 290


>gi|206602077|gb|EDZ38559.1| Putative dimethyladenosine transferase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 256

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 130/229 (56%), Gaps = 22/229 (9%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G G L+  L T+ A  + ++E+D++    L+   S + + + I++ DA+++ F 
Sbjct: 12  IVEIGPGKGILSGYLATMTA-DLWLVERDRRLAEPLRTTFSGN-SGVRILEADAMELSFG 69

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              N  SP  +++NLPYNI   L   ++++D +PP +  + L+FQ+EV +R+ A+   P 
Sbjct: 70  ---NDRSPYILVSNLPYNISVPLYLKFLASD-FPPVF--MVLMFQREVAKRLLARTTDPD 123

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQ 227
           YG LSV+T +  +     D++P  F+P+PKV S+V+  +    P+P    C  +   +++
Sbjct: 124 YGHLSVVTSYLAQIRKRIDLAPGAFYPAPKVHSSVLTVL----PLPVQDECTWAAISLSR 179

Query: 228 EAFGKRRKTLRQSLK-RLGGENLLHQAGI---ETNL---RAENLSIEDF 269
           + F  RRK+L ++L+    GE  L        ET+    + ++LS EDF
Sbjct: 180 KLFCYRRKSLGRALRTAFPGEESLADGTFFQSETDFFSRKVDSLSPEDF 228


>gi|315501792|ref|YP_004080679.1| dimethyladenosine transferase [Micromonospora sp. L5]
 gi|315408411|gb|ADU06528.1| dimethyladenosine transferase [Micromonospora sp. L5]
          Length = 289

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 132/270 (48%), Gaps = 15/270 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N +++I  ++G       +E+G G G+LT  LL + 
Sbjct: 10  IRELAARIGVTPTKKLGQNFVHDPNTVRRIVTTAGLTPDDVALEVGPGLGSLTLALLPVA 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L + +++       RL +   DAL+V  +      +P  ++ANL
Sbjct: 70  AH-VHAVELDPALAAALPETAARFAGAAAERLTVHPADALRVTADDLAG-PAPTALVANL 127

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++    P     L ++ QKEV +R+ A   S  YG  SV   W  ++ 
Sbjct: 128 PYNVAVPVVLHLLA--ELPTLRHGL-VMVQKEVADRLVAGPGSKVYGIPSVKLAWYARSR 184

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLR-----Q 239
               + P+VF+P P V S ++ F     P P    +++  +   AF +RRKTLR      
Sbjct: 185 AAGKVPPNVFWPVPNVDSGLVAFTRREPPRPDVPRKAVFAVVDAAFAQRRKTLRAALAGW 244

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDF 269
           +         L  AG++ + R E+L++E F
Sbjct: 245 AGGADRAAAALTAAGVDPSARGESLTVEQF 274


>gi|322369466|ref|ZP_08044031.1| dimethyladenosine transferase [Haladaptatus paucihalophilus DX253]
 gi|320551198|gb|EFW92847.1| dimethyladenosine transferase [Haladaptatus paucihalophilus DX253]
          Length = 294

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 112/233 (48%), Gaps = 21/233 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D  ++ +I   +  ++   V+EIG GPG LT  LL   A +V VIE+D  F   L
Sbjct: 31  QHFLVDDRVVDRIPTYADEMNLEHVLEIGGGPGVLTDRLLA-AADRVTVIERDPTFAEFL 89

Query: 87  KD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           ++   S      L +++ DAL V+   F         IANLPY I + + F  +      
Sbjct: 90  REEFRSECDDGGLTVVEGDALSVELPDFSAC------IANLPYGISSEIAFRLL------ 137

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
           P  + + L+FQKE  ER+ A+  S  YGRLSV         ++  +    F P P+V S 
Sbjct: 138 PLGKPMLLMFQKEFAERMAAESGSDDYGRLSVTAQHYADVRVVETVPREAFAPQPEVESA 197

Query: 205 VIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           ++  IP         E+      +  F +RRKT+R  ++     N  H +G++
Sbjct: 198 IVRTIPREPEYEVDDEAFFLDFVKAVFTQRRKTIRNGIR-----NTAHISGLD 245


>gi|145350183|ref|XP_001419496.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579728|gb|ABO97789.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 268

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 140/273 (51%), Gaps = 25/273 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++++GQ+FL+D +++    E++    G  V+EIG G GNLT  +L  GAR V+ +EKD+ 
Sbjct: 2   RRWLGQHFLVDASVVTDAVEAARLGAGERVLEIGPGTGNLTNEMLKRGAR-VLAVEKDRN 60

Query: 82  FFPILKD-ISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLPYNIGTRLLF 135
               L++ +  ++ +  E+++ D LK D     FE+    +   +++AN+PYNI T +L 
Sbjct: 61  LAEKLREGLCVEYKDAFELVEGDFLKWDGLATAFERATPETPRAKVVANIPYNITTDVLK 120

Query: 136 NWIS-ADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             +   DT    +E +  +FQ+EV +R +        Y  +SV   + +K   +  +   
Sbjct: 121 VLLPMGDT----FEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYSKPYYIRPVLRD 176

Query: 194 VFFPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
            F P P V S +I F P     L P+    +      Q  F ++RK LR +LK +  E  
Sbjct: 177 CFMPPPNVESCLIGFKPKEPHELLPLNGTDKQFFTFVQACFAQKRKMLRNNLKAVCDEAT 236

Query: 250 LHQA------GIETNLRAENLSIEDFCRITNIL 276
           +  A      G++  +R + L++E++ ++ N +
Sbjct: 237 MDGAFALLDRGLK--VRPQELTMEEYVKLFNFV 267


>gi|294102068|ref|YP_003553926.1| dimethyladenosine transferase [Aminobacterium colombiense DSM
           12261]
 gi|293617048|gb|ADE57202.1| dimethyladenosine transferase [Aminobacterium colombiense DSM
           12261]
          Length = 276

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 129/260 (49%), Gaps = 7/260 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K  +GQNFL D NIL +I + +   +   ++EIGAG G LT+ L      ++  +E D+ 
Sbjct: 9   KSSLGQNFLTDRNILGQIVKWAAIDESDILLEIGAGQGVLTRELALSPCSRIFALEIDKT 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L  +  +   RL II DDA+  D+E     ++P +++AN+PYNI T L++  + A 
Sbjct: 69  LHTHLDPLEEEFRPRLSIIWDDAVTFDYETKLP-AAPTKVVANIPYNITTPLIWRLLEAF 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                  S+ L+ Q+E   R+ A  N+     L +      +  ++  + P  F+P P V
Sbjct: 128 AGKGL-HSMILMVQREAALRLNASPNTKDRYPLGITLEIMGERKILRKVPPQAFYPQPAV 186

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----GIE 256
            S VI      N      ++ + + + +F +RRKTL  S  R G  +N L  A       
Sbjct: 187 DSAVIEIKVQRNFDLPRQKNWRTLLRASFAQRRKTLINSASRNGVSKNHLIDAFSALHFN 246

Query: 257 TNLRAENLSIEDFCRITNIL 276
            +LRAENL+ + +  + ++L
Sbjct: 247 PSLRAENLTGKQWLELWHML 266


>gi|284053579|ref|ZP_06383789.1| dimethyladenosine transferase [Arthrospira platensis str. Paraca]
          Length = 276

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 134/273 (49%), Gaps = 25/273 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L  I E++       ++EIG G G LT+ LL   A  V+ IE D+
Sbjct: 6   PRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLP-KASSVVAIEIDR 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRL--- 133
                L     +  N L ++Q D L  D       F     P +++AN+PYNI   +   
Sbjct: 65  DLCVQLAKKFGKIDNFL-LLQGDILSFDLNAHLSAFPQFQHPNKVVANIPYNITGPIIEG 123

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   I+     PF +++ LL QKEVG+R+ A+ +S  +G LSV   +  +   +  +   
Sbjct: 124 LLGTIAKPALKPF-DAIVLLVQKEVGDRLCAKPSSKAFGALSVRVQYLAECDWICHVPAK 182

Query: 194 VFFPSPKVTSTVIHFIPHLNPI------PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            F+P PKV S V+   P   PI      P  LE+L K+    F  RRK LR +LK     
Sbjct: 183 AFYPPPKVDSAVVRLRPR--PIASPAQNPQLLETLVKL---GFSTRRKMLRNNLKSQVEP 237

Query: 248 NLLHQ----AGIETNLRAENLSIEDFCRITNIL 276
            +L+Q      I   +RAE+LS++ + +++N+L
Sbjct: 238 QILNQLLETLDINPQVRAEDLSLQQWVQLSNLL 270


>gi|189346402|ref|YP_001942931.1| dimethyladenosine transferase [Chlorobium limicola DSM 245]
 gi|226729767|sp|B3EIC2|RSMA_CHLL2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189340549|gb|ACD89952.1| dimethyladenosine transferase [Chlorobium limicola DSM 245]
          Length = 263

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 127/259 (49%), Gaps = 11/259 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K    H +I  KK +GQNFL D NI +KI   SG+     ++EIG G G LT+ ++ +  
Sbjct: 3   KVEYKHTEIAVKKQLGQNFLTDRNITRKIVRLSGAKPEENILEIGPGFGALTKEIIEVCP 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
               V+EKD +       I +++P +L +I+ D LK+D E     +  +RI+ N+PY+I 
Sbjct: 63  -SFTVVEKDPKLAAF---IRTEYP-QLNVIEADFLKIDLEAVTG-ARKLRILGNIPYSIT 116

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +LF  +    +   +   TL+ Q EV  RI A  ++  YG L+V        +  F +
Sbjct: 117 SPILFRLLE---YRRCFMHATLMMQHEVAMRIVAVPSTKEYGILAVQLQAFFDVSYGFRV 173

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              VF P P V S VI   P  +      E   +  + AF +RRKTL  +LK     NL 
Sbjct: 174 GRKVFKPQPGVDSAVITITPKEHVPLSDPEGFSRFVRCAFHQRRKTLLNNLKE--SYNLD 231

Query: 251 HQAGIETNLRAENLSIEDF 269
                    RAE L+I++ 
Sbjct: 232 AVPSEVLKRRAEALAIQEL 250


>gi|145222523|ref|YP_001133201.1| dimethyladenosine transferase [Mycobacterium gilvum PYR-GCK]
 gi|315442971|ref|YP_004075850.1| dimethyladenosine transferase [Mycobacterium sp. Spyr1]
 gi|226732599|sp|A4T6P3|RSMA_MYCGI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|145215009|gb|ABP44413.1| dimethyladenosine transferase [Mycobacterium gilvum PYR-GCK]
 gi|315261274|gb|ADT98015.1| dimethyladenosine transferase [Mycobacterium sp. Spyr1]
          Length = 314

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 19/265 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQNF+ D N +++I  +S       V+E+G G G+LT  LL  GAR V  +E D 
Sbjct: 22  PRKSFGQNFVHDANTVRRIVSASSVNRSDHVLEVGPGLGSLTLALLDRGAR-VTAVEIDP 80

Query: 81  QFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                L    + H     NRL ++  D L   F++      P  ++ANLPYN+    L +
Sbjct: 81  VLATQLPTTIAAHSHSEVNRLTVLNRDILT--FKQSDMTEMPTALVANLPYNVAVPALLH 138

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++     P   ++ ++ Q EV ER+ A+     YG  S    +         +SP VF+
Sbjct: 139 LLAEF---PSIRTVMVMVQAEVAERLAAEPGGKDYGVPSAKVRFFGNVRRYGMVSPTVFW 195

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQE---AFGKRRKTLRQSLKRLGGE----- 247
           P P+V S ++    +  +P P   E  +++ +    AF +RRKT R +     G      
Sbjct: 196 PIPRVYSGLVRIDRYETSPWPTDTEFQEQVFELIDIAFAQRRKTSRNAFAEWAGSGNESA 255

Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272
           + L  A I+ + R E LSI DF R+
Sbjct: 256 SRLLAASIDPSRRGETLSINDFVRL 280


>gi|57505363|ref|ZP_00371292.1| dimethyladenosine transferase [Campylobacter upsaliensis RM3195]
 gi|57016499|gb|EAL53284.1| dimethyladenosine transferase [Campylobacter upsaliensis RM3195]
          Length = 260

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 128/268 (47%), Gaps = 20/268 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D  IL KI ++    D   ++EIG G G+LTQ LL +   K   I+ 
Sbjct: 2   IKAKKQYGQNFLHDKEILTKITQAIPK-DVKKIVEIGPGLGDLTQELLKISPVKAYEIDA 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRLLF 135
           D   F   K        +  ++  DA ++   D +K+F       ++ANLPY I ++L+ 
Sbjct: 61  DLIGFLRDKFQKELKEEKFILLHQDASELFCFDEDKYF-------LVANLPYYIASKLIL 113

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +  +      + L ++ QKE+  +  A+  S  +G L VL+    +  ++FD+SP  F
Sbjct: 114 QALEDENC----QGLIVMVQKEMALKFCAKSGSSDFGTLGVLSAMICEREILFDVSPLCF 169

Query: 196 FPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLH 251
            P PKV S+V+  I    L  I C L+S K   +  F   RK L  +LK    +   L  
Sbjct: 170 NPPPKVVSSVMRLIKQKELKQI-CELDSFKSFLRICFKSPRKQLLSNLKAEKCKLLELFE 228

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
             G++ N+R   L +  + +I   L D 
Sbjct: 229 DLGLKENVRPHELCVNSYLKIYEKLKDQ 256


>gi|288930669|ref|YP_003434729.1| dimethyladenosine transferase [Ferroglobus placidus DSM 10642]
 gi|288892917|gb|ADC64454.1| dimethyladenosine transferase [Ferroglobus placidus DSM 10642]
          Length = 248

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 15/222 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K   Q+ L D   LKKI   +   D + V+E+G GPGNLT +LL   A+KV  IEKD++F
Sbjct: 5   KSRDQHILKDKRYLKKIVSVAEVRDDV-VLEVGCGPGNLTSLLLK-KAKKVYGIEKDRRF 62

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +LK   S +    +LEII+ DALKV+F          + ++N+P++I + L F  +  
Sbjct: 63  VELLKKKFSGYIEEGKLEIIEGDALKVEF------PECDKFVSNIPFSISSPLTFKVLKH 116

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 ++   + +QKE  ER+ A++ S  YGRLSV+     KA ++  I  + F P PK
Sbjct: 117 G-----FKLSVVTYQKEFAERLVAREGSKKYGRLSVIAKAYCKAEIVDIIPRYAFKPVPK 171

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           V + ++  +         LE  + +    F +RRK   + L+
Sbjct: 172 VDAAIVKIVHEPEIKVENLEVFEDLVTFVFSRRRKKFSKILE 213


>gi|261402315|ref|YP_003246539.1| dimethyladenosine transferase [Methanocaldococcus vulcanius M7]
 gi|261369308|gb|ACX72057.1| dimethyladenosine transferase [Methanocaldococcus vulcanius M7]
          Length = 274

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 22/233 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQ FL+D N + K  ES+       V+EIG G G LT+ L    A+KV VIE D+
Sbjct: 4   PKKKLGQCFLIDKNFVNKAVESANLTKDDIVLEIGLGKGILTEELAK-HAKKVYVIEIDK 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139
                   +   + N +EII +DALKVD     FN     ++IANLPY I + + F  I 
Sbjct: 63  SLESYANKLKENY-NNIEIIWNDALKVDLNTLDFN-----KVIANLPYQISSPITFKLIK 116

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  ++   L++Q E  +R+ A++ +  YGRLSV    R     +  + P  F P P
Sbjct: 117 KG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEFITKVPPTAFHPKP 171

Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL----KRLG 245
           K+ S +I     LN     +E+        +  F  R K++R++L    K LG
Sbjct: 172 KIHSALIKI--KLNKNKYQIENEIFFDNFLRAVFQHRNKSVRKALIDSSKELG 222


>gi|332297935|ref|YP_004439857.1| Ribosomal RNA small subunit methyltransferase A [Treponema
           brennaborense DSM 12168]
 gi|332181038|gb|AEE16726.1| Ribosomal RNA small subunit methyltransferase A [Treponema
           brennaborense DSM 12168]
          Length = 294

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 132/283 (46%), Gaps = 17/283 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +LK  L    +  +K  GQNFL++ N   ++ ++     G TV E+G G G +T+ +L+ 
Sbjct: 18  ALKKFLDENGMAMQKKFGQNFLINGNARVRLIDTLDIGAGSTVWEVGPGLGAMTKEILSR 77

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEII--QDDALKVDFEKFFNISSPIRIIANLP 126
           GA K+ V E D+ F   +      +      I  + D LK  +++      P R   NLP
Sbjct: 78  GA-KLTVFEIDRGFASFIGKFFEPYARSGAFILREGDVLKT-WKQAAEQGIPDRFFGNLP 135

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI   ++ + ISA      ++   +  QKEV ER+ A     +Y   SVL  W      
Sbjct: 136 YNIAAAIVGDLISAGIR---FDKAVVTVQKEVAERMCAAAGDGNYSSFSVLCNWAYDVQP 192

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
           + D++   F+P P V S  +  +      PCC       ++ +  F  RRKT++ +L   
Sbjct: 193 VMDLAGGNFWPRPNVDSRAV-LMTKKAAFPCCENPGHFMQLQRSLFVSRRKTVKNNLTAF 251

Query: 245 -----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
                   ++L  AGI+   RAE L++E   ++++I   NQ I
Sbjct: 252 YRNAEKAADVLSAAGIDPQQRAERLTVEQLLQLSDI--SNQHI 292


>gi|283953677|ref|ZP_06371208.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794718|gb|EFC33456.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           414]
          Length = 265

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 133/264 (50%), Gaps = 18/264 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL+D ++L KI ++    +D I  IEIG G G+LTQ LL +   K   I+ D 
Sbjct: 5   KKQYGQNFLIDKSVLAKIIQAIPKEMDNI--IEIGPGLGDLTQDLLKISQVKAYEIDND- 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNW 137
              PILK    +    LE  + + +  +  + F+ S    P  ++ANLPY + + ++   
Sbjct: 62  -LIPILK---KKFQKELECGKFNLIHQNASEAFSASLDEKPYFLVANLPYYVASHIILKA 117

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +           L ++ QKE+ E+  A++ +  +  L +L+    +  ++FD++P  F P
Sbjct: 118 LEDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGILSAMICERKILFDVNPQCFNP 173

Query: 198 SPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAG 254
            PKV STVI  I   +    C +E+ K   ++ F   RK L  +LK    + L  L   G
Sbjct: 174 PPKVMSTVISLIKIKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTHKAKVLEVLSILG 233

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           ++ N+R   + ++ + +I + L D
Sbjct: 234 LKENIRPHEICVDSYLKIYDKLKD 257


>gi|67923799|ref|ZP_00517261.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501]
 gi|67854342|gb|EAM49639.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501]
          Length = 271

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 131/270 (48%), Gaps = 23/270 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L++I +++   +   ++EIG G G LT+ LL L    V+ +E D 
Sbjct: 4   PRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPL-VDSVLAVELDW 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVD-------FEKFFNISSPIRIIANLPYNIGTRL 133
                L      + N L ++Q D LK+D       F KF  I+   +++AN+PYNI + +
Sbjct: 63  DLCKKLVKSFGNYDNFL-LLQGDILKLDITTEAQDFPKFLPIN---KVVANIPYNITSPI 118

Query: 134 LFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           L   +   + P  PF++ + LL QKEV +RI A   +  YG LSV   +      + D+ 
Sbjct: 119 LEKLLGRISSPKTPFYDLIVLLIQKEVAQRIVAYPGNKTYGALSVKMQYLADCNYICDVP 178

Query: 192 PHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLK------RL 244
              F P PKV S VI F P  L       + L+ +    F  RRK LR +LK      RL
Sbjct: 179 RKAFSPPPKVDSAVITFRPRVLANSAVDPKRLETLINLGFSNRRKMLRNNLKSLIDSDRL 238

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITN 274
           G    L +  +   +RAE L I  +  ++N
Sbjct: 239 G--KFLREIDLNEQVRAEKLDINQWIALSN 266


>gi|224143306|ref|XP_002324910.1| predicted protein [Populus trichocarpa]
 gi|222866344|gb|EEF03475.1| predicted protein [Populus trichocarpa]
          Length = 386

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 12/223 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL  I   S      TV+EIG G GNLT  LL + A KV+ +E D++ 
Sbjct: 58  KSKGQHLLTNQRILDSIVRKSSINPTDTVLEIGPGTGNLTLKLLDV-ASKVVAVEIDKRM 116

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +L     +H   ++L +I++DALK +F KF        ++AN+PY I + L+   +  
Sbjct: 117 VGVLNKRVKEHGFEDKLSVIREDALKAEFPKF------DLVVANIPYGISSPLVAKLVYG 170

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               PF  S TLL QKE   R+ A+     + RL+V          + ++S   FFP PK
Sbjct: 171 AN--PF-RSATLLLQKEFARRLLAKPGDSEFNRLAVNVKLVADVEFVMNVSKRDFFPVPK 227

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           V S+V+   P        L+     T+  FGK+ KTL  + K+
Sbjct: 228 VDSSVVIIRPKDRIPDVNLDEWWAFTKNCFGKKNKTLGATFKQ 270


>gi|217076587|ref|YP_002334303.1| dimethyladenosine transferase [Thermosipho africanus TCF52B]
 gi|217036440|gb|ACJ74962.1| dimethyladenosine transferase [Thermosipho africanus TCF52B]
          Length = 261

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 136/266 (51%), Gaps = 26/266 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  YK+  KK +GQNFL +L I KKI ES+    G TV+EIG G G +T+ L+  GA  V
Sbjct: 7   LRQYKLNLKKSLGQNFLTNLEIAKKIVESANVQTGETVLEIGPGAGTITEFLIKKGAN-V 65

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--- 130
           + +E D++  PIL D  ++  N  +I   D LK D +    +    ++++N+PY+I    
Sbjct: 66  VAVEIDKRLTPIL-DRFNEFEN-FKIYYQDFLKFDMKL---LGENFKVVSNIPYSITGMI 120

Query: 131 -TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR--LSVLTGWRTKATMM 187
             ++LF+  S         +  L+ QKEVG+R+ A+   P   R  L+V+    T    +
Sbjct: 121 IKKILFSKFS---------TAVLMVQKEVGDRLLAK---PGEDRSFLTVVVQTFTDIEKV 168

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
             +S   F P P+V S V+ F    N      +E       + F K+RKTL  +LK    
Sbjct: 169 LHVSKGNFVPPPQVDSVVLKFTRKENIYEKYNIEEFWTFVSKCFEKKRKTLLNNLKGF-V 227

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRI 272
           +NL   +  +  LR + LS +DF ++
Sbjct: 228 KNLDCFSEFDLKLRPQQLSNDDFLKL 253


>gi|289580774|ref|YP_003479240.1| dimethyladenosine transferase [Natrialba magadii ATCC 43099]
 gi|289530327|gb|ADD04678.1| dimethyladenosine transferase [Natrialba magadii ATCC 43099]
          Length = 281

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 24/237 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLL-TLGAR-KVIVIEKDQQF 82
           Q+FL+D  +L ++      +D  T  V+EIG G G LT  LL T+GA  ++ V+E+D   
Sbjct: 21  QHFLVDDRVLDRLPTYLTDIDADTSHVLEIGGGTGVLTDRLLETIGADDQLTVVERDPPL 80

Query: 83  FPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L++  S      RL +I+ DAL+VD  +F   SS    ++NLPY + + + F  +  
Sbjct: 81  AEFLQEEFSDAIDAGRLTVIEGDALEVDLPEF--TSS----VSNLPYGVSSEITFRLL-- 132

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P    L L+FQ+E  ER+ A+ N+  YGRLSV T     A ++  I    F P P 
Sbjct: 133 ----PEQRPLVLMFQQEFAERMVAEPNTSEYGRLSVSTQHYADAELVESIPKEAFSPPPA 188

Query: 201 VTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           V S V+  +P         E+   +  +  F +RRKT+R  ++     N  H +G++
Sbjct: 189 VQSAVVRLVPREPEYDVENEAFFLRFVKALFTQRRKTIRNGIR-----NTAHISGLQ 240


>gi|269836868|ref|YP_003319096.1| dimethyladenosine transferase [Sphaerobacter thermophilus DSM
           20745]
 gi|269786131|gb|ACZ38274.1| dimethyladenosine transferase [Sphaerobacter thermophilus DSM
           20745]
          Length = 293

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 134/273 (49%), Gaps = 23/273 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           + + +L    + P K +GQNFL D  I+++IAE +       V+E+G G G LT+  L  
Sbjct: 19  TFRDLLEEIGVRPSKALGQNFLHDTRIVQRIAEVADLGPDDLVVEVGPGLGILTRE-LAR 77

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A  VI +E D +    L++  S     + I++ D L ++  +      P  ++ANLPY+
Sbjct: 78  RAGTVIAVELDTRLADHLRE--SLELENVRIVEGDILDLNLAELAG-KRPYHVVANLPYS 134

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           +   ++ + + +D  P     + ++ Q+EV ERI A+   P    L+V   +     + F
Sbjct: 135 VAAAVIEHVLESDHRP---GRMVVMVQREVAERIVAR--PPEMSVLAVAVQFYAVPRIAF 189

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSL--- 241
            + P  F P P+V S V+     +NP P    + +     + +  F +RRK L  +L   
Sbjct: 190 RVGPGAFVPRPRVDSAVLRL--DINPNPPLSGAERAAFFTLVRAGFSQRRKRLANALADA 247

Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFC 270
               K + GE L   AGI+ + RAE LS+E++ 
Sbjct: 248 LDLPKSVVGERLT-AAGIDPDRRAETLSVEEWL 279


>gi|187918451|ref|YP_001884014.1| dimethyladenosine transferase [Borrelia hermsii DAH]
 gi|119861299|gb|AAX17094.1| dimethyladenosine transferase [Borrelia hermsii DAH]
          Length = 278

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 147/284 (51%), Gaps = 14/284 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N  +S+K +L    I P+K  GQN+L++ +I +K+ ++    +   + EIG G G
Sbjct: 1   MNINYNSINSIKRMLESKNIAPRKIWGQNYLINEHIREKLVDALEIKENERIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL   A  + V E D ++  IL +   Q  N  ++I+ D LK   ++  NI+   
Sbjct: 61  AMTIILLK-KANFLTVFEIDPKYSEILNEQFGQLKN-FKLIKGDFLKTYKQEGQNIN--- 115

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI +++    IS          +    QKE+ +R+ A++ + +Y   +VL  
Sbjct: 116 KIFSNLPYNIASKV----ISMLIEDEILTHMVFTVQKELADRMLAKEGNKNYSSFTVLVQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI    F+P PKV ST +  IP    I    ++  K+ +  F  RRK L+ 
Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTLKLIPCKKEIK-NFKAFNKLVRTVFTSRRKKLKN 230

Query: 240 S-LKRLGGENLLHQAGIETNL--RAENLSIEDFCRITNILTDNQ 280
           + +  +  +N+L++  ++  L  R E +S+++F  I+N LT N 
Sbjct: 231 TIINFIADDNILNEDFLKNFLDKRPEEISVKEFIAISNKLTTNH 274


>gi|88808454|ref|ZP_01123964.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. WH 7805]
 gi|88787442|gb|EAR18599.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. WH 7805]
          Length = 280

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 129/276 (46%), Gaps = 19/276 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           P+K  GQ++L D  +L +I ++S  GS D   V+E+G G G LTQ LL   A  V  +E 
Sbjct: 8   PRKRFGQHWLRDERVLDQILDASELGSDD--RVLEVGPGRGALTQRLLASTAAAVHAVEL 65

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L+D  +  P    + + D L+V      +     +++AN+PYNI   LL   I
Sbjct: 66  DRDLVAGLQDRFADSPQ-FSLREGDVLEVPL-TLPDGQRATKVVANIPYNITGPLLERLI 123

Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                P  P ++ L LL QKEV ERI A+  +  +  LSV        + +  + P  F 
Sbjct: 124 GRLDQPIDPPYQRLVLLVQKEVAERIRARPGASSFSALSVRMQLLAHCSSVCSVPPRCFQ 183

Query: 197 PSPKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLR------QSLKRLGGE 247
           P PKV S VI   P      P P     ++ + ++AF  RRK LR      Q L  L  E
Sbjct: 184 PPPKVHSEVIRLDPLPQEQRPDPVTCRRVECLLKQAFLARRKMLRNTLSVSQPLCEL--E 241

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            +  +AGI+   R + ++   + ++   L      A
Sbjct: 242 EITLKAGIDLRQRPQEVAPNAWVKLARGLNQADSAA 277


>gi|302560209|ref|ZP_07312551.1| dimethyladenosine transferase [Streptomyces griseoflavus Tu4000]
 gi|302477827|gb|EFL40920.1| dimethyladenosine transferase [Streptomyces griseoflavus Tu4000]
          Length = 296

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 132/277 (47%), Gaps = 20/277 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++G     TV+E+G G G+LT  LL   
Sbjct: 15  VRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPDDTVVEVGPGLGSLTLALLE-A 73

Query: 70  ARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V  +E D      L    +        R  ++  DA+ V         +P  ++ANL
Sbjct: 74  ADRVTAVEIDDVLAAALPATVAARMPARAGRFALVHSDAMHV---TELPGPAPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  +++P    +L ++ Q EV +R+ A   S  YG  SV   W  +  
Sbjct: 131 PYNVAVPVLLHML--ESFPSIERTL-VMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLR---- 238
               I  +VF+P+P V S ++  +    P P    S ++   +   AF +RRKTLR    
Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLVRRAEP-PKTTASRREVFAVVDAAFAQRRKTLRAALA 246

Query: 239 -QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
             +      E  L  AG+    R E+L++E+F RI  
Sbjct: 247 GWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAE 283


>gi|68536597|ref|YP_251302.1| dimethyladenosine transferase [Corynebacterium jeikeium K411]
 gi|119365018|sp|Q4JU23|RSMA_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|68264196|emb|CAI37684.1| dimethyladenosine transferase [Corynebacterium jeikeium K411]
          Length = 316

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 140/300 (46%), Gaps = 38/300 (12%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           + ++ +     + P K +GQNF+ D N ++KI +++       V+EIG G G+LT  LL 
Sbjct: 13  NEIRQLAEELDLNPTKKLGQNFVHDPNTVRKIVKAADVTADDNVVEIGPGLGSLTLALLE 72

Query: 68  LGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI--RII 122
            GA  V  +E D +     P   +        + +I  DA++V  + F +   P+   ++
Sbjct: 73  AGA-SVTAVEIDPRLAAKLPATLEEQGAAEADVAVILKDAMEVAVQDFADAGRPLPTALV 131

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +  + +P   + + ++ Q EV +R+ A   S  YG  SV  G+  
Sbjct: 132 ANLPYNVSVPVLLHML--EEFPSI-DRVLVMVQLEVADRLAAAPGSKIYGVPSVKAGFYG 188

Query: 183 KATMMFDISPHVFFPSPKVTSTVI---HFIPHLNP------------IPCCLESL--KKI 225
                  I  +VF+P+PK+ S ++    +     P                +E L  +K+
Sbjct: 189 SVARAATIGKNVFWPAPKIDSGLVRIDRYAEGAEPWAGGQSGAEQFDADQGIEQLDAQKL 248

Query: 226 TQE-------AFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
            +E       AF +RRKTLR +L    G     E  L  AGI+  LR E LS E F ++ 
Sbjct: 249 RREVFDLADAAFLQRRKTLRAALSGHFGSGQAAEEALRSAGIDPTLRGEKLSTEQFVQLA 308


>gi|118473872|ref|YP_889677.1| dimethyladenosine transferase [Mycobacterium smegmatis str. MC2
           155]
 gi|118175159|gb|ABK76055.1| dimethyladenosine transferase [Mycobacterium smegmatis str. MC2
           155]
          Length = 297

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 127/269 (47%), Gaps = 27/269 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           P+K  GQNF+ D N +++I  +SG      V+E+G G G+LT  LL  GAR V  +E D 
Sbjct: 9   PRKAFGQNFVHDANTVRRIVSASGVHRHDHVLEVGPGLGSLTLALLDRGAR-VTAVEIDP 67

Query: 80  ---QQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRL 133
              +Q    + D S    NRL ++  D L +   D E+      P  ++ANLPYN+    
Sbjct: 68  LLARQLPTTIADHSHSEINRLTVLNRDILTLMPGDLEE-----QPTALVANLPYNVAVPA 122

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L + ++     P   ++ ++ Q EV ER+ A+     YG  S    +         +SP 
Sbjct: 123 LLHLLAEF---PSIRTVMVMVQAEVAERLAAEPGGKDYGVPSAKVRFYGNVRRHGMVSPT 179

Query: 194 VFFPSPKVTSTVIHFIPH-LNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGG--- 246
           VF+P P+V S ++    +  +P P      + +  +    F +RRKT R +     G   
Sbjct: 180 VFWPIPRVYSGLVRIDRYETSPWPMDEAFRDEVFNLIDIGFAQRRKTSRNAFAEWAGGGN 239

Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRI 272
              E LL  A I+   R E LSI DF R+
Sbjct: 240 ESAERLL-AARIDPARRGETLSINDFVRL 267


>gi|116515030|ref|YP_802659.1| hypothetical protein BCc_089 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256884|gb|ABJ90566.1| dimethyladenosine transferase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 275

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 133/266 (50%), Gaps = 26/266 (9%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +P K +GQNFL +  I+ +I           +IEIG+G G LT  +  +  +K+IV+E D
Sbjct: 10  VPIKKLGQNFLQNKEIINQIINLININKNDNIIEIGSGLGALTFPICRI-IKKMIVLEID 68

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGT------ 131
           +     L    S    +L+II  D +K DF  FF++      R I NLPYNI T      
Sbjct: 69  EDLVFFLT--QSLFIKKLQIIIADIIKFDFCCFFSLQKYKKYRFIGNLPYNIATIFFLKT 126

Query: 132 -RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
            + L+N I           +  +FQKEV +R+ A   +  YGRLS++  +  K   + ++
Sbjct: 127 IKFLYNIID----------MHFMFQKEVAKRLLATPGTKEYGRLSIIAQYFYKIETVINV 176

Query: 191 SPHVFFPSPKVTSTVIHFIP-HLNP---IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           +   FFP+PKV ST + F P + N    I      L+ IT+ +F  RRK L  +L  L  
Sbjct: 177 NKFNFFPTPKVDSTFLRFTPKYFNSKYKIDKHFSVLELITRFSFQHRRKFLNNNLISLFS 236

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRI 272
              L    I+   RAEN+S+  +C++
Sbjct: 237 TKELISLDIDPYSRAENVSLIQYCKL 262


>gi|57236897|ref|YP_179850.1| dimethyladenosine transferase [Campylobacter jejuni RM1221]
 gi|205355725|ref|ZP_03222495.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|62900460|sp|Q5HS85|RSMA_CAMJR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|57165701|gb|AAW34480.1| dimethyladenosine transferase [Campylobacter jejuni RM1221]
 gi|205346502|gb|EDZ33135.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315059157|gb|ADT73486.1| Dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 266

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 16/263 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   K   I+ D  
Sbjct: 5   KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138
             PILK    +    LE  + + +  D  + FN S    P  ++ANLPY + + ++   +
Sbjct: 62  LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      L ++ Q+E+ E+  A++ +  +  L VL+    +  ++FD+ P  F P 
Sbjct: 119 EDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174

Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAGI 255
           PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    + L  L   G+
Sbjct: 175 PKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTLGL 234

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           + N+R   + ++ + +I + L D
Sbjct: 235 KENIRPHEICVDLYLKIYDKLKD 257


>gi|300790057|ref|YP_003770348.1| dimethyladenosine transferase [Amycolatopsis mediterranei U32]
 gi|299799571|gb|ADJ49946.1| dimethyladenosine transferase involved in rRNA methylation
           [Amycolatopsis mediterranei U32]
          Length = 278

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 16/273 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N +++I E +    G  V+E+G G G+LT  LL  G
Sbjct: 10  IRGLAAELDVRPTKKLGQNFVHDPNTVRRIVELANVAPGDVVLEVGPGLGSLTLGLLATG 69

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V+ +E D +    L K ++ + P     L+++  DA++V   +   +  P  ++ANL
Sbjct: 70  A-HVVAVEIDPKLAERLPKTVAERGPEVAGNLDVVGADAMRVTRGE---LGEPTALVANL 125

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++    P   + L ++ Q EV +R+ A   S  YG  SV   W   A 
Sbjct: 126 PYNVAVPVVLHLLA--EVPSLRKGL-VMVQTEVADRMAAGPGSRIYGVPSVKLAWYGSAR 182

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            +  +   VF+P P V S ++ F           E L  +   AF +RRKTLR +L    
Sbjct: 183 KVAAVPRSVFWPVPNVDSALVAFERGDTTASEDRELLFGLVDAAFSQRRKTLRAALAGWA 242

Query: 246 GE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           G       LL  AGI+   R E L + DF RI 
Sbjct: 243 GSAERAGELLTAAGIDPRTRGEQLDVHDFARIA 275


>gi|108801227|ref|YP_641424.1| dimethyladenosine transferase [Mycobacterium sp. MCS]
 gi|123178211|sp|Q1B416|RSMA_MYCSS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|108771646|gb|ABG10368.1| dimethyladenosine transferase [Mycobacterium sp. MCS]
          Length = 294

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 123/265 (46%), Gaps = 19/265 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           P+K  GQNF+ D N +++I  +SG      V+++G G G+LT  LL  GA  V  +E D 
Sbjct: 22  PRKSFGQNFVHDANTVRRIVSASGVHRHDHVLKVGPGLGSLTLALLDRGA-HVTAVEIDP 80

Query: 80  ---QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              QQ    + D S    NRL ++  D L +      N   P  ++ANLPYN+    L +
Sbjct: 81  LLAQQLPTTIADHSHSEINRLTVLNQDILTLMPSDLEN--QPTALVANLPYNVAVPALLH 138

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++     P   S+ ++ Q EV ER+ A      YG  S    +         +SP VF+
Sbjct: 139 LLAEF---PTIRSVMVMVQAEVAERLAADPGGKDYGVPSAKVRFYGNVRRYGMVSPTVFW 195

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKI---TQEAFGKRRKTLRQSLKRLGGEN---- 248
           P P+V S ++    +  +P P   +   ++      AF +RRKT R +     G      
Sbjct: 196 PIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAFAQRRKTSRNAFAEWAGSGNESA 255

Query: 249 -LLHQAGIETNLRAENLSIEDFCRI 272
             L  A I+ + R E L+I DF R+
Sbjct: 256 RRLLAASIDPSRRGETLAIADFVRL 280


>gi|225159370|ref|ZP_03725666.1| ribosomal RNA adenine methylase transferase [Opitutaceae bacterium
           TAV2]
 gi|224802031|gb|EEG20307.1| ribosomal RNA adenine methylase transferase [Opitutaceae bacterium
           TAV2]
          Length = 285

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 16/242 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L+     PK+++GQNFL+D NI++K  E +    G TV+E+G G G LT+ LL  GA
Sbjct: 9   RELLARLGHTPKRFLGQNFLVDGNIVRKSLELAAVSAGDTVVEVGPGLGTLTRALLIAGA 68

Query: 71  RKVIVIEKDQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKF---------FNISSPIR 120
             V  +EKD   +  +   ++ + P  L +++ DA++                   S  +
Sbjct: 69  -NVWAVEKDAALYAHLAATLAPEFPGTLHLMEGDAVEFPLAGLKPAAAAATGTGSGSDFK 127

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPY I T     W+ A    P    + L+ Q E  +R  AQ  S  +G +S+L   
Sbjct: 128 IVANLPYAIST----PWMDAVLSGPLPLRMVLMLQLEAAQRYVAQPGSKLFGGISILLQS 183

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +      +S   F P P V S ++H +    P     E+ K + +  F +RRK +R  
Sbjct: 184 AFEVAPGHRVSGACFHPRPDVDSCLLHLVRRAQPYVFRAET-KALIRACFQQRRKQIRPL 242

Query: 241 LK 242
           L+
Sbjct: 243 LR 244


>gi|148926802|ref|ZP_01810481.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844527|gb|EDK21634.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 266

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 16/263 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   K   I+ D  
Sbjct: 5   KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138
             PILK    +    LE  + + +  D  + FN S    P  ++ANLPY + + ++   +
Sbjct: 62  LIPILK---KKFQKELECGKFNLIHQDTSEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      L ++ Q+E+ E+  A++ +  +  L VL+    +  ++FD+ P  F P 
Sbjct: 119 EDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174

Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAGI 255
           PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    + L  L   G+
Sbjct: 175 PKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTLGL 234

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           + N+R   + ++ + +I + L D
Sbjct: 235 KENIRPHEICVDLYLKIYDKLKD 257


>gi|94502395|ref|ZP_01308851.1| dimethyladenosine transferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833652|ref|YP_001597848.1| dimethyladenosine transferase [Candidatus Sulcia muelleri GWSS]
 gi|293977764|ref|YP_003543194.1| dimethyladenosine transferase [Candidatus Sulcia muelleri DMIN]
 gi|94451049|gb|EAT14018.1| dimethyladenosine transferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206141|gb|ABS30451.1| dimethyladenosine transferase [Candidatus Sulcia muelleri GWSS]
 gi|292667695|gb|ADE35330.1| dimethyladenosine transferase [Candidatus Sulcia muelleri DMIN]
          Length = 251

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 130/256 (50%), Gaps = 19/256 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K + Q FL D NI KKI  S    +  T++EIG G G LTQ LL       ++ E D+++
Sbjct: 5   KKLCQYFLHDKNIAKKIVNSISFKESKTIVEIGPGMGILTQYLLLNNKNLFLL-EIDKKY 63

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPYNIGTRLLFNW 137
              LK    ++P    II+++    +F     + FF       +I N PY I +++LFN 
Sbjct: 64  VEYLK---IKYP----IIKNNIFNKNFLIWNPKDFF--LDSFTLIGNFPYKISSQILFNI 114

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I    + P  E + + FQKEV +RIT++  +  YG+LSV+     K   +F ++  VF P
Sbjct: 115 IKYREYIP--ECIGM-FQKEVADRITSKHMNKSYGKLSVIMQAFYKIEYLFTVNNTVFIP 171

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            P+V S V+  +   + +    +   KI + AF  RRK L  SLK+L   +  ++  +  
Sbjct: 172 KPRVKSAVVRMLKRKDNLLIKEDIFIKIVKTAFLYRRKKLYNSLKKLSFSSEFYKNPLLK 231

Query: 258 NLRAENLSIEDFCRIT 273
             R E LS+ DF  +T
Sbjct: 232 K-RVEQLSVNDFILLT 246


>gi|281358611|ref|ZP_06245090.1| dimethyladenosine transferase [Victivallis vadensis ATCC BAA-548]
 gi|281314959|gb|EFA98993.1| dimethyladenosine transferase [Victivallis vadensis ATCC BAA-548]
          Length = 276

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 135/279 (48%), Gaps = 16/279 (5%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L   L    + P + +GQNFLLD N+L  I   S    G TV+E+G G G LT+ LL 
Sbjct: 4   QQLTAALESIGMRPGRGLGQNFLLDGNLLDYIVRLSAPQPGETVLEVGPGFGALTRKLLA 63

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GA  V  +E D +    L+  +    N   + + DA +V++ +      P R IANLPY
Sbjct: 64  SGA-DVYAVEFDHRIAEYLR--THLEANNFHLTEADACRVNYLELLPQGRPFRAIANLPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I T  +   +     P   E++  + Q+E+GER+ A   +  YG LSV T  R +  + 
Sbjct: 121 SISTIFIARMLDLPAPP---EAMFFMLQREMGERLAAPVGTKDYGALSVRTQLRYEVKLE 177

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             + P VFFP P+V S ++ F  H     +   C L  L  + +  F +RRK L + L  
Sbjct: 178 KIVPPEVFFPPPEVDSAIVSFRRHERYSADKELCRL--LPGVVKTVFAQRRKQLGKLLSN 235

Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
             G+      L    I T  R + LS++ + ++T +L D
Sbjct: 236 NYGKEKALPALEALNIPTETRPDKLSVDQYAQLTRLLFD 274


>gi|86150521|ref|ZP_01068745.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597720|ref|ZP_01100953.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218563297|ref|YP_002345077.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|27151611|sp|Q9PLW7|RSMA_CAMJE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|85838973|gb|EAQ56238.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190024|gb|EAQ94000.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112361004|emb|CAL35805.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926902|gb|ADC29254.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315929676|gb|EFV08853.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           305]
          Length = 266

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 16/263 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   K   I+ D  
Sbjct: 5   KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138
             PILK    +    LE  + + +  D  + FN S    P  ++ANLPY + + ++   +
Sbjct: 62  LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      L ++ Q+E+ E+  A++ +  +  L VL+    +  ++FD+ P  F P 
Sbjct: 119 EDKNCL----GLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174

Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQAGI 255
           PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    + L  L   G+
Sbjct: 175 PKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTLGL 234

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           + N+R   + ++ + +I + L D
Sbjct: 235 KENIRPHEICVDLYLKIYDKLKD 257


>gi|320010315|gb|ADW05165.1| dimethyladenosine transferase [Streptomyces flavogriseus ATCC
           33331]
          Length = 290

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 129/276 (46%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL   
Sbjct: 15  IRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 73

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V+ +E D      L   ++++ P   +R  ++  DA+ V         +P  ++ANL
Sbjct: 74  ADRVVAVEIDDVLAGALPATVAARLPGRADRFALVHSDAMLV---TELPGPAPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L   +  + +P    +L ++ Q EV +R+ A+  +  YG  SV   W     
Sbjct: 131 PYNVAVPVLLTML--ERFPSIERTL-VMVQAEVADRLAARPGNKVYGVPSVKANWYADVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLK- 242
               I   VF+P+P V S ++       PI       +   +   AF +RRKTLR +L  
Sbjct: 188 RAGSIGRTVFWPAPNVDSGLVSLARRTEPIRTTASRTEVFAVVDAAFAQRRKTLRAALSG 247

Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
                   E  L  AGI    R E L++E+F  I  
Sbjct: 248 WAGSAPAAEAALTAAGISPQARGEALTVEEFAAIAE 283


>gi|284931020|gb|ADC30958.1| dimethyladenosine transferase [Mycoplasma gallisepticum str. F]
          Length = 268

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 128/255 (50%), Gaps = 27/255 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P K  GQNFL+D NI+ KI E+   ++   V+EIG G G +++ L+   A     IE D+
Sbjct: 16  PSKQRGQNFLIDQNIINKIVEAVIKINPSKVLEIGPGLGAISEQLIKRFADNYYAIELDK 75

Query: 81  QFF-----PILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLL 134
           + F      +LKD          I+  DAL++D++  F N+     ++ NLPYNI ++L+
Sbjct: 76  KLFHHLNEELLKD---------HILHADALEIDWKSIFDNLGDNPTMVGNLPYNISSKLI 126

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
             +I +      +    ++ QKE+G R+ A+ NS  Y   S L  +    + + +I+   
Sbjct: 127 KKFILST-----YRCAIIMVQKEMGLRLLAKINSKDYSAFSALCQYSLNVSKIIEINETA 181

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253
           F P PKV ST++ F+   +      E  +K  +  F  RRKT+  +LK      L+ Q+ 
Sbjct: 182 FIPQPKVRSTLL-FLEKKD--IAFNEGYEKFLKLIFLSRRKTILNNLKNNYDSKLVIQSL 238

Query: 254 ---GIETNLRAENLS 265
              G +   RA+ LS
Sbjct: 239 VSLGFKKTSRAQELS 253


>gi|203288028|ref|YP_002223043.1| dimethyladenosine transferase [Borrelia recurrentis A1]
 gi|201085248|gb|ACH94822.1| dimethyladenosine transferase [Borrelia recurrentis A1]
          Length = 274

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 145/287 (50%), Gaps = 26/287 (9%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N  +S+K +L +  I P+K  GQN+L++ NI  KI ++        + EIG G G
Sbjct: 1   MNINYNSINSIKNVLKNKNIAPRKIWGQNYLINENIRAKIIDALDIKKNEKIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T  LL   A  +   E D ++  IL +   Q  N  ++I+ D LK   ++  +I+   
Sbjct: 61  AMTATLLN-KANFLTAFEIDPKYSEILNEKFGQLKN-FKLIEGDFLKTYKQEKKSIN--- 115

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I++NLPYNI ++++   I  +        +    QKE+ +R+ A++ + +Y   ++L  
Sbjct: 116 KIVSNLPYNIASKVISTLIEDEILI----HMVFTVQKELADRMIAREGNKNYSSFTILVQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK------KITQEAFGKR 233
                  + DI    F+P PKV ST I  IP       C E++K      K+ +  F  R
Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTIKLIP-------CKENIKNFQIFNKLIRTVFTSR 224

Query: 234 RKTLRQS-LKRLGGENLLHQAGIETNL--RAENLSIEDFCRITNILT 277
           RK L+ + +  +  EN+L +  ++  L  R E +S+++F  I N LT
Sbjct: 225 RKKLKNTIINFIKNENILKKDFLKNFLDKRPEEISVKEFITIANKLT 271


>gi|242556505|pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
           Methanocaldococcus Jannaschi
          Length = 263

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 14/217 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q FL+D N + K  ES+       V+EIG G G LT+ L    A+KV VIE D+   P  
Sbjct: 1   QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPYA 59

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
             +   + N +EII  DALKVD  K  FN     +++ANLPY I + + F  I       
Sbjct: 60  NKLKELY-NNIEIIWGDALKVDLNKLDFN-----KVVANLPYQISSPITFKLIKRG---- 109

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            ++   L++Q E  +R+ A   +  YGRLSV    R    ++  + P  F+P PKV S +
Sbjct: 110 -FDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAI 168

Query: 206 IHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241
           +   P+        E+      +  F  R K++R++L
Sbjct: 169 VKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKAL 205


>gi|332296038|ref|YP_004437961.1| Ribosomal RNA small subunit methyltransferase A [Thermodesulfobium
           narugense DSM 14796]
 gi|332179141|gb|AEE14830.1| Ribosomal RNA small subunit methyltransferase A [Thermodesulfobium
           narugense DSM 14796]
          Length = 263

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 105/195 (53%), Gaps = 15/195 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P K  GQNFL+D NI KKI ES+       ++EIG G G LT+ L+ L       IE D+
Sbjct: 6   PLKRYGQNFLVDQNISKKIIESALIEKEDLILEIGPGKGALTKYLVKL-PNDYFGIEVDR 64

Query: 81  QFFPIL-----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
             + +L     KD++       +II  D L+ D      I   + +I+NLPYNI + ++ 
Sbjct: 65  GLYDLLCKEFEKDLALCGK---KIILADVLETDLG---FIEKKVNVISNLPYNIASLIIV 118

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             I  + +    +S+TL+ QKE+ +R+ A   +  YGRLSVL     + +++F++    F
Sbjct: 119 KMIKENIY---LKSMTLMIQKEMSQRLFAMPGAKEYGRLSVLVQNFFEGSIIFEVKESCF 175

Query: 196 FPSPKVTSTVIHFIP 210
           +P PKV S VI  IP
Sbjct: 176 YPKPKVRSVVIRLIP 190


>gi|238062573|ref|ZP_04607282.1| dimethyladenosine transferase [Micromonospora sp. ATCC 39149]
 gi|237884384|gb|EEP73212.1| dimethyladenosine transferase [Micromonospora sp. ATCC 39149]
          Length = 291

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 131/274 (47%), Gaps = 15/274 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N +++I  ++G       +E+G G G+LT  LL   
Sbjct: 12  IRDLAARLGVNPTKKLGQNFVHDPNTVRRIVAAAGLAADDVALEVGPGLGSLTLALLPA- 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A     +E D      L   +++H      RL + + DAL++D  +     +P  ++ANL
Sbjct: 71  AAHTHAVEIDPTLAAALPQTAARHAGPYAGRLTVHRADALRIDPAEL-AAPAPTALVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++A   P     L ++ QKEV +R+ A   S  YG  SV   W   + 
Sbjct: 130 PYNVAVPVVLHLLAA--LPSLRHGL-VMVQKEVADRLVAGPGSKVYGIPSVKLAWHAHSR 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLR-----Q 239
               + P+VF+P P V S ++ F     P P    E +  +   AF +RRKTLR      
Sbjct: 187 AAGRVPPNVFWPVPNVDSGLVAFTRREPPRPEVPRERVFAVVDAAFAQRRKTLRAALAGW 246

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
           +         L  AG++   R E+L++E F  I 
Sbjct: 247 AGGADRAAAALTAAGVDPGARGESLTVEQFAAIA 280


>gi|283956167|ref|ZP_06373652.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792321|gb|EFC31105.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 266

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 16/263 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   K   I+ D  
Sbjct: 5   KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138
             PILK    +    LE  + + +  D  + FN S    P  ++ANLPY + + ++   +
Sbjct: 62  LIPILK---KKFQKELECGKFNLIHQDASEAFNSSLDEKPYFLVANLPYYVASHIILRAL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      L ++ QKE+ E+  A++ +  +  L VL+    +  ++FD+ P  F P 
Sbjct: 119 EDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174

Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQAGI 255
           PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK  ++    +L   G+
Sbjct: 175 PKVISAVMSLIKTKDFDEFCEIENFKNFLKDCFKAPRKQLLGNLKTYKVKVLEVLSILGL 234

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           + N+R   + +  + +I + L D
Sbjct: 235 KENIRPHEICVNSYLKIYDKLKD 257


>gi|76799748|ref|ZP_00781834.1| Dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (Highlevel
           kasugamycin resistance protein ksgA)
           (Kasugamycindimethyltransferase) [Streptococcus
           agalactiae 18RS21]
 gi|76584901|gb|EAO61573.1| Dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (Highlevel
           kasugamycin resistance protein ksgA)
           (Kasugamycindimethyltransferase) [Streptococcus
           agalactiae 18RS21]
          Length = 171

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 94/166 (56%), Gaps = 9/166 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G LT+ L    A
Sbjct: 10  RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D  ++  N ++++  D LK D     + F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           Y I T +L + I +    PF E   ++ QKEV +RI+A  N+  YG
Sbjct: 128 YYITTPILMHLIESKI--PFAE-FVVMIQKEVADRISAMPNTKAYG 170


>gi|120405750|ref|YP_955579.1| dimethyladenosine transferase [Mycobacterium vanbaalenii PYR-1]
 gi|226732602|sp|A1TEH3|RSMA_MYCVP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119958568|gb|ABM15573.1| dimethyladenosine transferase [Mycobacterium vanbaalenii PYR-1]
          Length = 311

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 19/265 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           P+K  GQNF+ D N +++I  +S       V+E+G G G+LT  LL  GA KV  +E D 
Sbjct: 22  PRKSFGQNFVHDANTVRRIVSASSINRSDHVLEVGPGLGSLTLALLDRGA-KVTAVEIDP 80

Query: 80  ---QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
               Q    +   S    NRL ++  D L   F++      P  ++ANLPYN+    L +
Sbjct: 81  VLANQLPTTIAAHSHSEVNRLTVLNRDILT--FKQSDMTEMPTALVANLPYNVAVPALLH 138

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++     P   ++ ++ Q EV ER+ A+     YG  S    +         +SP VF+
Sbjct: 139 LLAEF---PSIRTVMVMVQAEVAERLAAEPGGKDYGVPSAKVRFFGNVRRYGMVSPTVFW 195

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQ---EAFGKRRKTLRQSLKRLGGE----- 247
           P P+V S ++    +  +P P   E  +++ +    AF +RRKT R +     G      
Sbjct: 196 PIPRVYSGLVRIDRYETSPWPTDPEFRQQVFELIDVAFAQRRKTSRNAFAEWAGSGNESA 255

Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272
           + L  A I+ + R E LSI DF R+
Sbjct: 256 SRLLAASIDPSRRGETLSINDFVRL 280


>gi|158334916|ref|YP_001516088.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017]
 gi|189028799|sp|B0CC89|RSMA_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|158305157|gb|ABW26774.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017]
          Length = 269

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 132/270 (48%), Gaps = 15/270 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L    +L++I  ++       ++EIG G G LT+ LL   A+ V+ +E D+
Sbjct: 4   PRKRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLA-QAQSVVSVELDR 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   +   N   +++ D L +D         P +++AN+PYNI + +L   +  
Sbjct: 63  DLCKSLRHTFNDQEN-FTLLELDFLNLDVAAELTEPLPNKVVANIPYNITSPILSKLLGR 121

Query: 141 DTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              P  P +E++ LL QKEV +R+ A+  S  +  LSV + +     ++  +    F P+
Sbjct: 122 IDAPAQPVYETVVLLIQKEVADRLVAEPGSKIFNGLSVRSQYLADCELICPVPASAFKPA 181

Query: 199 PKVTSTVIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253
           PKV S V+   P   P P      L +L K+    F  RRK LR +LK L   + L +  
Sbjct: 182 PKVESAVVRLTPRPYPQPVQNPQWLSTLLKV---GFSSRRKMLRNNLKSLVDRDQLSECL 238

Query: 254 ---GIETNLRAENLSIEDFCRITNILTDNQ 280
               I    RAE+LS+  +  +++ +  +Q
Sbjct: 239 NTLNISLQARAEDLSVTQWIALSDSVHPSQ 268


>gi|332982498|ref|YP_004463939.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON]
 gi|332700176|gb|AEE97117.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON]
          Length = 299

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 135/288 (46%), Gaps = 26/288 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ ++  Y   P K MGQNFL++   L  I   +       V+EIG G G LT + L+ 
Sbjct: 12  AVQRLIDRYNFKPNKAMGQNFLINKEALNAIVNGADISAEDEVLEIGPGLGTLT-LKLSE 70

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL----KVDFEKFFNISSPIRIIAN 124
            A  V  +E D++  P+LK  + Q    + II+ D L      + ++     S I ++AN
Sbjct: 71  RAAHVTAVEVDKRIIPLLKQ-TLQDVGNVSIIEGDFLNPMVAEEIKECLAGKSAI-VVAN 128

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS------PHYGRLSVLT 178
           LPY I T +L + I         +   L+ QKEV  R+ AQ  S        YG LS+  
Sbjct: 129 LPYYITTPVLMDIIENYIM---IKRAVLMMQKEVAYRVVAQPGSRLSGSVKDYGVLSISV 185

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236
            +     ++ ++    F PSP V S V+       P     +      + + AFG+RRKT
Sbjct: 186 QYYMDPQILLEVPRSDFLPSPDVDSAVVRLDRRDKPAVDVQDERMFFSLVKAAFGQRRKT 245

Query: 237 LRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L  +L         + G + +L +A I+ N RAE LS+++F  I N L
Sbjct: 246 LFNALAGGLGYPLGKDGLKRVLERAHIDGNRRAETLSLQEFADIANEL 293


>gi|325108886|ref|YP_004269954.1| dimethyladenosine transferase [Planctomyces brasiliensis DSM 5305]
 gi|324969154|gb|ADY59932.1| dimethyladenosine transferase [Planctomyces brasiliensis DSM 5305]
          Length = 305

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 32/295 (10%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           KSH L+ +L+ Y I P+  +GQN+L+DLNI++ I   +       V+E+G G G +T  +
Sbjct: 9   KSH-LQQLLAQYGINPRGDLGQNYLIDLNIIEFIVSQAHLGPNDVVLEVGTGTGGMTAFM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------------VDFEKFF 113
           +   A  V+ +E D     +  D    H N L ++  DAL+            +  +   
Sbjct: 68  VQQAAH-VVTVEVDTNMHRMASDQLGHHEN-LTLLHKDALRNKNNFAPEVLEVLQEQLAV 125

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
           + +  ++ +ANLPYNI T L+ N ++ +     WE + +  Q E+G R+ A      YG 
Sbjct: 126 DPARRLKFVANLPYNIATPLVSNLVATELP---WERMVVTIQLELGLRMGAGPGKSTYGA 182

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEA 229
           LS     +    ++  + P VF+P PKV S V+  +P  NP      + +K      +  
Sbjct: 183 LSAWLQAQAFVKVLKKLPPTVFWPRPKVDSAVVRLVP--NPAGRKEIADRKFFHDFVRRV 240

Query: 230 FGKRRKTLRQSL-----KRLGG---ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           F +RRK LR  L     K L     + +L    +  N RAE L       ++N L
Sbjct: 241 FLQRRKLLRSVLVGMYRKELSKPLVDEVLAAMELGPNTRAEELPPPQLVELSNRL 295


>gi|308176575|ref|YP_003915981.1| dimethyladenosine transferase [Arthrobacter arilaitensis Re117]
 gi|307744038|emb|CBT75010.1| dimethyladenosine transferase [Arthrobacter arilaitensis Re117]
          Length = 295

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 132/277 (47%), Gaps = 20/277 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     I P K +GQNF++D N +++I  ++      TV+E+G G G+LT  ++
Sbjct: 12  ATEIRRLAEELGIRPTKTLGQNFVIDGNTIRRIVAAAKVDPSETVLEVGPGLGSLTLGIM 71

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQ-HPNR---LEIIQDDALKVDFEKFFNISSPIRII 122
              A KV+ +E D      L    ++  P R   L +I  DA+KV          P  ++
Sbjct: 72  DAAA-KVVAVEIDPPLAKRLPQTMAEFRPGREDDLTVILSDAMKVTELP----GEPTSLV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + +  + +P     L ++ Q EV +R+ A   +  YG  SV   W  
Sbjct: 127 ANLPYNVAVPVVLHLL--EHFPSIRNGL-VMVQDEVADRMAATPGNKIYGVPSVKGAWYG 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
                  I  +VF+P+PK+ S ++ F      +  P   E    I   AF +RRKTLR +
Sbjct: 184 TMRKAGVIGMNVFWPAPKIHSGLVGFTRDKDRSDAPDRREVF-AIIDAAFAQRRKTLRAA 242

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272
           L    G     E +L  AGI+   R E L IE +  I
Sbjct: 243 LSGWAGSGARAEQILVAAGIDPKERGEKLDIEQYIDI 279


>gi|72382118|ref|YP_291473.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL2A]
 gi|119365047|sp|Q46L58|RSMA_PROMT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|72001968|gb|AAZ57770.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL2A]
          Length = 291

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 11/235 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L+ ++ IP+K  GQ++L D  +L +I +++       V+E+G G G LT+ L+   AR +
Sbjct: 7   LNDFRHIPRKRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQARFI 66

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALK--VDFEKFFNISSPIRIIANLPYNIGT 131
             IE D+     LK   S H N+  + + D L   +D E    I+   +++AN+PYNI  
Sbjct: 67  QAIELDRDLVVGLKKRFS-HQNKFSLREGDILSAPLDAENGLTIN---KVVANIPYNITG 122

Query: 132 RLLFNWISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            LL   I      P   +E+L LL QKEV +R+ A+  + ++  LSV      K   + D
Sbjct: 123 PLLKRLIGELRKAPDNCFETLVLLMQKEVAQRLLARPGTSNFSALSVRIQLLAKCQDVCD 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL 241
           +    F P+PKV S V+   P  +  P   E    L+K+ + AF  RRK LR ++
Sbjct: 183 VPSKCFQPAPKVDSKVVMIKPFASIDPDFYEVGNLLEKLLKHAFAGRRKKLRNTI 237


>gi|288575051|ref|ZP_06393408.1| dimethyladenosine transferase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570792|gb|EFC92349.1| dimethyladenosine transferase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 268

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 131/253 (51%), Gaps = 14/253 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PK  +GQNFL++ +I+++  E +       ++EIG G G LT+ +L+     +  IE D+
Sbjct: 9   PKTSLGQNFLINRDIVRRTVERADITKKDVILEIGPGQGVLTREILSSPCSHLHSIEIDR 68

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +  P LKDI  +  +R  +   D +K  + +   +  P +++AN+PY++ T L+++ I  
Sbjct: 69  RLEPFLKDI--EEDDRFSLHWGDGVKFPYGELRPV--PSKVVANIPYHVTTPLIWS-ILE 123

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              P     + L+ QKE  +R+ AQ  +     L +       A     +SP  F P PK
Sbjct: 124 KLAPSGLSYMILMVQKEAADRLVAQACTKERYPLGITLAAMGSAKTYMKVSPGSFRPIPK 183

Query: 201 VTSTVIHF-IPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQA 253
           V+S ++   I     +P   ++L +K+ +  F +RRK L  +L  LG +     +L+ ++
Sbjct: 184 VSSALVELTIERRRDLPS--DNLWRKVLKAGFSQRRKKLANNLVSLGIKKEEILDLMDRS 241

Query: 254 GIETNLRAENLSI 266
           GI +  RAE LS+
Sbjct: 242 GIPSEARAETLSV 254


>gi|256833167|ref|YP_003161894.1| dimethyladenosine transferase [Jonesia denitrificans DSM 20603]
 gi|256686698|gb|ACV09591.1| dimethyladenosine transferase [Jonesia denitrificans DSM 20603]
          Length = 600

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 137/294 (46%), Gaps = 24/294 (8%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+   +H ++ +     + P K  GQNFL D   ++KI   SG      V+E+G G G+L
Sbjct: 7   TLLGPAH-IRELAQECGVTPTKTKGQNFLHDAGTVRKIVRLSGVAPTDQVLEVGPGLGSL 65

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQ-HPN---RLEIIQDDALKVDFEKFFNISS 117
           T  LL  G   V  IE D    P L     +  P    RL ++  +AL+V          
Sbjct: 66  TLGLLDAGCH-VTAIELDDVLAPHLAGTVERFQPGASQRLTVVHGNALEV---TELPDPQ 121

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P  ++ANLPYN+   +L   +  + +P     + ++ Q+EV +R+ A   S  YG  S  
Sbjct: 122 PTALVANLPYNVSVPILLTIL--ERFPTITRVM-VMVQREVADRLVAPPGSRTYGTPSAK 178

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKR 233
             W   A     +  +VF+P+P V S +++       +P    + ++    +   AF +R
Sbjct: 179 LAWYGTANRAMKVGRNVFWPAPNVDSALVYLD---RTMPVTTSASQRDVFAVIDAAFAQR 235

Query: 234 RKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           RKTLRQ+L  + G +     +L  AG+    R E L+I DF RI   +T  + +
Sbjct: 236 RKTLRQALAGIAGNSQRASTILEAAGVPPTARGEQLTIHDFARIAEAMTPKEPV 289


>gi|226500226|ref|NP_001150423.1| LOC100284053 [Zea mays]
 gi|195639144|gb|ACG39040.1| dimethyladenosine transferase [Zea mays]
          Length = 354

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 20/268 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+ L +  ++  I   +G     TV+EIG G GNLT+ LL  G + V+ +E D +
Sbjct: 26  EKSKGQHILRNPALVDSIVAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVELDPR 85

Query: 82  FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L      HP  +RL++IQ D LK D   +F+I      +AN+PY I + L F  +S
Sbjct: 86  MVLELNRRFQGHPLSSRLKVIQGDVLKCDLP-YFDIC-----VANIPYQISSPLTFKLLS 139

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P +    ++FQ+E   R+ AQ     Y RLSV     ++ + +  +  + F P P
Sbjct: 140 ---HRPIFRCAVIMFQREFAMRLVAQPGDSLYCRLSVNVQLLSRVSHLLKVGRNNFRPPP 196

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-------- 251
           KV S+V+   P     P   +    + +  F ++ KTL    K+     LL         
Sbjct: 197 KVDSSVVRIEPRKPLPPVSFKEWDGLVRICFNRKNKTLGSLFKQKRVLELLEKNYKTMQS 256

Query: 252 -QAGIETNLRAENLSIEDFCRITNILTD 278
            Q   +  +  E +S +D   + N++ D
Sbjct: 257 LQTVQDAEMGEEKMSADDVALLANMVED 284


>gi|222823065|ref|YP_002574638.1| dimethyladenosine transferase [Campylobacter lari RM2100]
 gi|222538286|gb|ACM63387.1| dimethyladenosine transferase [Campylobacter lari RM2100]
          Length = 273

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 126/267 (47%), Gaps = 12/267 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK+ GQNFL D +++ KI ++    D   ++EIG G G+LTQ LL +    +   E 
Sbjct: 2   IKAKKHFGQNFLCDKSVVDKIIQAIPK-DTKNIVEIGPGLGDLTQELLKIPQAHIRAYEI 60

Query: 79  DQQFFPIL-KDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D+   PIL K   ++      E+I  +A    F++         ++ANLPY I T L+  
Sbjct: 61  DKDLIPILNKKFQNEIEGGNFELIHQNASDA-FDQGSLSDKEYFLVANLPYYIATNLILK 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ QKEV ++  A +   ++  L VL     +  M+FDI P  F 
Sbjct: 120 ALEDQNCL----GLIVMVQKEVAQKFCANEKESNFSALGVLCALICQRQMLFDIQPQSFN 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENL--LHQ 252
           P PKVTS V+  I   +    C  +E+ K+  +  F   RK L  + K    + L     
Sbjct: 176 PPPKVTSAVMKLIKTTHYQQKCENIEAFKEFLRACFQNPRKQLLSNFKNKKEKILKAFEA 235

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
             I +  RA  +S++ + +I + L D+
Sbjct: 236 LDISSTSRAHEISVDSYLKIYDYLKDD 262


>gi|313125978|ref|YP_004036248.1| dimethyladenosine transferase [Halogeometricum borinquense DSM
           11551]
 gi|312292343|gb|ADQ66803.1| dimethyladenosine transferase [Halogeometricum borinquense DSM
           11551]
          Length = 289

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 35/266 (13%)

Query: 27  QNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           Q+FL+D  +L +I        D   V+E+G G G LT  LL + A +V V+E+D +    
Sbjct: 36  QHFLVDDRVLDRIPSYLPEDTDTSHVLEVGGGTGALTDRLLRV-ADRVTVVERDTRLAEF 94

Query: 86  LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L++    +   +RL I++ DAL++D  +F         ++NLPY I + + F  +     
Sbjct: 95  LREEFADAIEADRLTILEGDALEIDLPEF------TACVSNLPYGISSEITFRLL----- 143

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P    L L+FQKE GER+ A+  +  YGRLSV         ++  +    F P+P V S
Sbjct: 144 -PRGVPLVLMFQKEFGERMAAETGTDEYGRLSVSAQHYGDVEVVETVPKEAFDPAPAVES 202

Query: 204 TVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET----- 257
            V+   P         E+      +  F +RRKT+R  ++     N  H +G+E      
Sbjct: 203 VVVRVTPRAPDYEVDDEAFFLDFVKALFTQRRKTIRNGIR-----NTAHISGLEDPEAVV 257

Query: 258 --------NLRAENLSIEDFCRITNI 275
                     RA N+S E F  +T +
Sbjct: 258 EAADEDVLRKRAGNMSPEAFAALTAL 283


>gi|154249153|ref|YP_001409978.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1]
 gi|154153089|gb|ABS60321.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1]
          Length = 261

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 126/264 (47%), Gaps = 28/264 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL      +KI   S      T++EIGAG G LT  L   GA  V  IE D +
Sbjct: 4   KKSLGQNFLSSEIYAEKIVGLSNVEKNDTILEIGAGAGTLTVALAKTGAT-VFAIEIDNR 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNW 137
             PILK+   ++ N ++II +D L++D     N     + I+N+PY I      +LLF  
Sbjct: 63  MEPILKERLEKYDN-VKIIFEDFLEMDISFLPN---GYKCISNIPYYITAPILKKLLFTN 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
            S          LT++ QKEVGER+  +  S + G L+V+         +  +    F P
Sbjct: 119 FSM---------LTIMMQKEVGERLLEKPGSSNRGFLTVVLQTVADVEKLLLVPKSAFVP 169

Query: 198 SPKVTSTVIHFIPHLNPIPCC----LESLKKITQEAFGKRRKTLRQSLKRLGG-----EN 248
           +P V S V+  I      P       ES       +F ++RKT+  +LK +G      EN
Sbjct: 170 NPDVDSIVLK-ITKKKEFPFSNLSEFESYWTFVSNSFSQKRKTISNNLKSMGMAKEEIEN 228

Query: 249 LLHQAGIETNLRAENLSIEDFCRI 272
           LL    I+TN R E LS E+F  +
Sbjct: 229 LLKNLNIKTNARPEELSTEEFLSL 252


>gi|293364052|ref|ZP_06610788.1| dimethyladenosine transferase [Mycoplasma alligatoris A21JP2]
 gi|292552542|gb|EFF41316.1| dimethyladenosine transferase [Mycoplasma alligatoris A21JP2]
          Length = 259

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 134/266 (50%), Gaps = 19/266 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQNFL D N+L +I  +   L+   V+EIG G G+LT+ LL   A  V   E D+
Sbjct: 8   AKKRFGQNFLKDQNVLNRIV-NLVDLENQNVLEIGPGRGDLTKKLLQ-KANFVKAYEIDR 65

Query: 81  QFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                L ++I  +H    +++ +D L+ D     N      IIAN+PY I T ++F  + 
Sbjct: 66  DLVRFLNEEIKEEH---FQLVPNDFLQEDISGLKNYW----IIANIPYYITTEIIFKIL- 117

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +    F+ ++ L+ QKEV ERI A+KNS  Y +LS+   + +     F +  + F P+P
Sbjct: 118 -ENIQNFYGAI-LMVQKEVAERIEAKKNSSEYSKLSLTCQYYSTTKKEFIVKANSFIPAP 175

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGI 255
           KV S +I    + N +    + +    +  F +RRK L  SLK+       E+   +  +
Sbjct: 176 KVDSAIISLTFNKNRVWN--KEINNFFKLCFLQRRKKLSFSLKQKYSLEKIESSFEKLDL 233

Query: 256 ETNLRAENLSIEDFCRITNILTDNQD 281
            TN R + L +E   ++ N L D ++
Sbjct: 234 TTNTRIQELDLEKVLQLYNYLEDKEN 259


>gi|223938516|ref|ZP_03630408.1| dimethyladenosine transferase [bacterium Ellin514]
 gi|223892778|gb|EEF59247.1| dimethyladenosine transferase [bacterium Ellin514]
          Length = 278

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 12/277 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +K IL+  +I   K +GQNFL D N L++IA+ +       V+EIG G G LT++L
Sbjct: 2   KLTEMKQILASGQIQLTKSLGQNFLHDQNQLRRIADGAELSKSDKVLEIGPGLGPLTELL 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           +   A +V+ IEKD++    L+   +       ++  DAL+    +  + SS  +++ANL
Sbjct: 62  IE-RAGEVLAIEKDRRLVDFLEKRYANTAG-FTLLHQDALEYIRREPQDWSS-WKLVANL 118

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY++ + +L +   +   P     + +  Q EV  R+ AQ +   YG LS+L     +  
Sbjct: 119 PYSVASPILVDLAQSKGCPRM---MVVTLQLEVARRLVAQTDDDDYGVLSLLIQLYYEPQ 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKR 243
             F I    FFP+P V S  +       P+      ++  ++ + A  +RRK + + LK+
Sbjct: 176 GHFKIPSDCFFPAPDVDSACVVLKRREQPLLTSELNDAFARLVKLALSQRRKMMLKLLKQ 235

Query: 244 LGGENLLHQAGIETNL----RAENLSIEDFCRITNIL 276
                 L  A  E  L    RAE +S+E F R+T IL
Sbjct: 236 NWPVEKLTAAFEELQLSPQIRAEKVSLEQFVRLTQIL 272


>gi|116074644|ref|ZP_01471905.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. RS9916]
 gi|116067866|gb|EAU73619.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. RS9916]
          Length = 298

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 116/253 (45%), Gaps = 11/253 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D  +L  I E+SG      V+E+G G G LT+ LL   A  V  +E D+ 
Sbjct: 30  RKRFGQHWLRDERVLDHILEASGLQADDRVLEVGPGRGALTERLLRSPAAAVHAVELDRD 89

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+D       R  + + D L V      +     +++AN+PYNI   L+   I   
Sbjct: 90  LVAGLRDRFGSD-GRFSLREGDVLDVPL-TLPDEGLATKVVANIPYNITGPLMERLIGRL 147

Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             P  P ++ L LL QKEV ERI A+     +  LSV      + + +  + P  F P P
Sbjct: 148 DRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLAQCSTVCPVPPRCFQPPP 207

Query: 200 KVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH----Q 252
           KV S VI   P      P P     ++ + ++AF  RRK LR +L  L     L      
Sbjct: 208 KVQSEVIRLDPLPMQQRPEPALARRVESLLKQAFLARRKMLRNTLAGLCPPEQLQMLAAA 267

Query: 253 AGIETNLRAENLS 265
           AGI+   R + ++
Sbjct: 268 AGIDLQQRPQEVA 280


>gi|167041696|gb|ABZ06440.1| putative ribosomal RNA adenine dimethylase [uncultured marine
           microorganism HF4000_010I05]
          Length = 312

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 19/265 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +I P+K +GQ+FL D  +L +I  ++       V+EIG G G LT+ L+  GA +V+ IE
Sbjct: 35  RIRPRKSLGQHFLADGRVLTRIVNAAEIASQELVLEIGPGQGALTRRLVDRGA-QVVAIE 93

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L D     PN L +++ DA KVD +      +  +++ NLPY     ++  +
Sbjct: 94  LDHHLASTLPDRLGNPPN-LTVVEADARKVDLKSLLGSGAVYKVLGNLPYYAANPIIRRF 152

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           + A   P   + + +  Q+EV   + A       G LSV   +  +  ++  + P  F P
Sbjct: 153 LEAPNQP---QLMVVTLQQEVARSMAAAPGK--MGFLSVAVQYYAETKVVCTVPPRAFRP 207

Query: 198 SPKVTSTVIHFIPHLNPIPCC----LESLKKITQEAFGKRRKTLRQSLKRLGG------E 247
            PKVTS V+     + P+P      +E+   + +  F   RK LR SL    G       
Sbjct: 208 PPKVTSAVVRL--DIRPVPPVDVAEVEAFFALVRAGFASPRKQLRNSLAHGLGVSTVAIA 265

Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272
           +LL    ++ + R   LS+ ++  I
Sbjct: 266 HLLDSLNLDGSRRPATLSMVEWAVI 290


>gi|297157778|gb|ADI07490.1| dimethyladenosine transferase [Streptomyces bingchenggensis BCW-1]
          Length = 301

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL   
Sbjct: 15  IRELAARLGVRPTKQRGQNFVIDANTVRRIVRTADVRPDDVVVEVGPGLGSLTLALLE-A 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V  +E D      L     +      +R E++  DAL +         +P  ++ANL
Sbjct: 74  ADRVTAVEIDDVLAAALPSTVQERLPGRADRFELVHSDALHI---TELPGPAPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  D +P    +L ++ Q EV +R+ A   S  YG  SV   W  +  
Sbjct: 131 PYNVAVPVLLHML--DRFPTIERTL-VMVQAEVADRLAAAPGSKVYGVPSVKAAWYAEVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR----- 238
               I  +VF+P+P V S ++  +    P+      + + ++   AF +RRKTLR     
Sbjct: 188 RAGAIGRNVFWPAPNVDSGLVSLVRRPAPLRTTATKDQVFRVIDAAFAQRRKTLRAALAG 247

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +      E  L  AGI    R E L++E F  I  
Sbjct: 248 WAGSAAAAEAALTAAGISPQARGEALTVEQFAAIAE 283


>gi|221195710|ref|ZP_03568764.1| dimethyladenosine transferase [Atopobium rimae ATCC 49626]
 gi|221184476|gb|EEE16869.1| dimethyladenosine transferase [Atopobium rimae ATCC 49626]
          Length = 328

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 130/305 (42%), Gaps = 37/305 (12%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            + +  L  + +  K  +GQNFL++ NI++KI   +       V+E+G G G LT  +L 
Sbjct: 16  RATRETLEAFGLATKHRLGQNFLVEDNIIRKIIRLAELTSDDVVLEVGPGLGTLTVAMLD 75

Query: 68  LGARKVIVIEKDQQFFPILKDISSQ-HPNRLEIIQDDALKV------------------- 107
              R V  IE D++   +L     + H +   +   DALK                    
Sbjct: 76  Y-VRAVCSIEADRELEGVLAATCKEPHQDSFVLCMGDALKATPQLVGDAYASLGVFADTQ 134

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
             E    +  P + ++NLPY +   L+  +    T     E   ++ Q EV +RI A+  
Sbjct: 135 GKEASGALIGPNKFVSNLPYQVAATLILLFFQEFTT---LEQAVVMVQAEVADRIAAKPG 191

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCC------L 219
           +  YG  +       + +  F+++P  F P P+V S V+     P  +P          L
Sbjct: 192 TKAYGAYTAKLALYAQVSGRFEVAPGNFMPPPRVNSAVVRLERAPMTDPSGTSVLTSEQL 251

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
             + ++   AF +RRKT+R S+   G      E     A IE  +RAE L ++DF R+  
Sbjct: 252 AWVARVIDAAFAQRRKTIRNSMGASGFKKDTLEKAFLAAHIEPTVRAEALGVKDFVRLAM 311

Query: 275 ILTDN 279
            L + 
Sbjct: 312 ALAEG 316


>gi|209526260|ref|ZP_03274790.1| dimethyladenosine transferase [Arthrospira maxima CS-328]
 gi|209493357|gb|EDZ93682.1| dimethyladenosine transferase [Arthrospira maxima CS-328]
          Length = 274

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 135/277 (48%), Gaps = 25/277 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L  I E++    G  ++EIG G G LT+ LL      V+ +E D+
Sbjct: 6   PRKRFAQHWLRSPATLNHILEAADLSLGDRILEIGPGTGILTERLLP-KVSSVVAVEIDR 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRIIANLPYNIGTRL--- 133
                L     +  N L ++Q D L  D   + +      +P +++AN+PYNI   +   
Sbjct: 65  DLCVQLAKKFGKIDNFL-LLQGDILNFDLNGYLSGFPKFQNPNKVVANIPYNITGPIIEG 123

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   I+     PF +++ LL QKEVG R+ A+ +S  +G LSV   +  +   +  +   
Sbjct: 124 LLGTIAKPAVKPF-DAIVLLVQKEVGARLCAKPSSKAFGALSVRVQYLAECDWICHVPAT 182

Query: 194 VFFPSPKVTSTVIHFIPHLNPI------PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            F+P PKV S V+   P   PI      P  LE+L K+    F  RRK LR +LK     
Sbjct: 183 AFYPPPKVDSAVVRLRPR--PIASPAQNPQLLETLVKL---GFSTRRKMLRNNLKSQVEP 237

Query: 248 NLLHQ----AGIETNLRAENLSIEDFCRITNILTDNQ 280
             L+Q      I   +RAE+LS++ + +++N+L   Q
Sbjct: 238 QTLNQLLETLDINPQVRAEDLSLQQWVQLSNLLLAPQ 274


>gi|145590046|ref|YP_001156643.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048452|gb|ABP35079.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 258

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 131/263 (49%), Gaps = 17/263 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQ 80
           +K  GQNFL D  ++  I         + +IEIG G G LT+ +L +L    ++ I++D 
Sbjct: 5   RKRFGQNFLQDQGVIYSIVALINPSPDMHIIEIGPGLGALTRPLLSSLDQLDLLEIDRD- 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSP---IRIIANLPYNIGTRLLFN 136
               ++     ++   L++I+ DALK +F E   N  S     +++ NLPYNI + LLF+
Sbjct: 64  ----LVAYWEKENLKGLKVIEGDALKFNFLEWAQNCDSKKGLCKVVGNLPYNISSPLLFH 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +SA T     +    + Q EV ER+ A   S  + RLSV+   R    ++ ++ P  F 
Sbjct: 120 LVSAATQ---IDEQVFMLQAEVVERMVAPAGSSDFSRLSVMLQARYDMELVLEVPPEAFD 176

Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S V+  IP    +       +L+++   AF +RRK LR +L+       L    
Sbjct: 177 PQPKVNSAVVRMIPRQDFSLTTKQWHALEQVVAAAFSQRRKMLRTNLQVFAER--LKLTD 234

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           IE   RA+++S++ +     +L 
Sbjct: 235 IELKARAQDISVDRYIEWARVLV 257


>gi|298492284|ref|YP_003722461.1| dimethyladenosine transferase ['Nostoc azollae' 0708]
 gi|298234202|gb|ADI65338.1| dimethyladenosine transferase ['Nostoc azollae' 0708]
          Length = 277

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 132/270 (48%), Gaps = 13/270 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L  I +++   +   V+EIG G G LT+ LL L    ++ +E D 
Sbjct: 4   PRKQFAQHWLKSEKALNTIVKAAECQETDRVLEIGPGTGILTRRLLPL-VHSLLAVEIDP 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFN 136
               +L     +  N L ++Q D L ++       F       +++AN+PYNI   ++  
Sbjct: 63  DLCKLLVKQLGERENFL-LLQGDFLTLNVPSQLTAFSKFQKQNKVVANIPYNITGPIIEK 121

Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            +   A   P  ++S+ LL QKEV ER+ A+  S  +G LS+   +     ++  +    
Sbjct: 122 LLGTIASPNPEPYDSIVLLVQKEVAERLYAKPGSRSFGALSLRVQYLADCELICSVPAGA 181

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249
           F+P PKV S V+  +P    IP    + L+ + +  FG +RK LR +L+ +   +    L
Sbjct: 182 FYPPPKVDSAVVRLLPRQIEIPVNDPKKLENLVKLGFGSKRKMLRNNLQSVVDRDRLTQL 241

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L Q  I   +RAE+LS+  +  + N+ T +
Sbjct: 242 LEQLEINPQVRAEDLSVSQWVTLVNLGTGD 271


>gi|87124270|ref|ZP_01080119.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. RS9917]
 gi|86167842|gb|EAQ69100.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. RS9917]
          Length = 280

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 19/257 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D  +L++I +++    G  V+E+G G G LT+ LL      V  +E D+ 
Sbjct: 9   RKRFGQHWLRDDQVLERILQAADLQAGDRVLEVGPGRGALTERLLASPVASVHAVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   +  P R  + + D L V  E      +  +++AN+PYNI   LL   +   
Sbjct: 69  LVVGLRQRFAAEP-RFSLQEGDVLAVALEGPGGCRA-TKVVANIPYNITGPLLERLVGRL 126

Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             P  P ++SL LL QKEV ERI A+     +  LSV        + +  + P  F P P
Sbjct: 127 DRPVDPPYQSLVLLVQKEVAERIRARPGQSSFSALSVRMQLLAYCSSVCPVPPRCFQPPP 186

Query: 200 KVTSTVIHFIPHLNPIPC-------CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251
           KV S V+     L+P+P            ++++ + AF  RRK LR +L  L   + L  
Sbjct: 187 KVQSEVV----RLDPLPADQRLPVELARDVERLLRMAFLARRKMLRNTLAPLAAPDQLQA 242

Query: 252 ---QAGIETNLRAENLS 265
               AGI+   R + ++
Sbjct: 243 LAGAAGIDLQQRPQEIA 259


>gi|310779117|ref|YP_003967450.1| dimethyladenosine transferase [Ilyobacter polytropus DSM 2926]
 gi|309748440|gb|ADO83102.1| dimethyladenosine transferase [Ilyobacter polytropus DSM 2926]
          Length = 263

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 130/266 (48%), Gaps = 21/266 (7%)

Query: 22  KKYMGQNFLLDL-NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL +   +LK+I E SG  +   ++EIG G G LT++LL   + KV  +E D+
Sbjct: 6   KKKFGQNFLTNQGEVLKQIMEVSGVEETDVILEIGPGEGALTELLLE-ASSKVNCVEIDR 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               IL     ++P +  +I  D L VDF+K   I   ++++AN+PY I + ++   I  
Sbjct: 65  DLEKILIKKFDENP-KFNLIMQDVLTVDFDK--QIGEKVKVVANIPYYITSPIINKLIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             +    + + ++ QKEV ERI A K+      L++   +   A  +F I    F P PK
Sbjct: 122 RKY---VDEIYIMVQKEVAERICA-KSGKERSTLTLAVEYFGDAEYLFTIPKEFFQPVPK 177

Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLL 250
           V S  +          +  IP   ++  K  + +F  +RK L  ++  LG         L
Sbjct: 178 VDSAFMSIKLRKDNSRIEEIPE--DTFFKYVKASFSNKRKNLINNISTLGIPKDIVREKL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
            QA I+   RAE LSI++F  +  + 
Sbjct: 236 EQAEIDGKRRAETLSIDEFMNLIKVF 261


>gi|260221806|emb|CBA30735.1| hypothetical protein Csp_C25050 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 728

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 33/247 (13%)

Query: 48  GITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           G  ++EIG G   LTQ L+  LG   VI +++D     + K + S HP +L +I+ D L 
Sbjct: 495 GDPMVEIGPGLAALTQPLVERLGRLTVIELDRD-----LAKRLRS-HP-QLHVIESDVLN 547

Query: 107 VDFEK-------------FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           VDF               F  ++  +R++ NLPYNI T +LF+ +    +    E    +
Sbjct: 548 VDFSSADIAPAAPENAATFATVARKLRVVGNLPYNISTPILFHLLD---YVECIEDQHFM 604

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213
            QKEV +R+ A  +S  + RLSV+  WR     +  + P  F P P+V S V+  +P   
Sbjct: 605 LQKEVIDRMVAPPDSSDFSRLSVMLQWRYAMEDVLFVPPECFDPPPRVNSAVVRMVPLAQ 664

Query: 214 PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG----IETNLRAENLSIEDF 269
           P    +    ++ Q AF +RRK LR +L        L Q G     +   RA+ + +E++
Sbjct: 665 PPVLDVGLFSEMVQVAFSQRRKLLRHTLG-----AWLEQKGFSGQFDVQRRAQEVPVEEY 719

Query: 270 CRITNIL 276
             +   L
Sbjct: 720 VALVQSL 726


>gi|159903252|ref|YP_001550596.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9211]
 gi|226732610|sp|A9B9Y0|RSMA_PROM4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|159888428|gb|ABX08642.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 282

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 124/256 (48%), Gaps = 17/256 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D+ IL+KI E++   +   V+EIG G G LT  LL      V  IE D  
Sbjct: 9   RKRFGQHWLKDVAILEKIVEAAELCENDRVLEIGPGRGALTHKLLNSKVSLVHAIELDTD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++    H  R  +   DALK+       I    +++AN+PYNI + LL   I   
Sbjct: 69  LVVGLRE-RFFHETRFSLKGGDALKISLLPPDGIEVN-KVVANIPYNITSPLLERLIGKL 126

Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            + P   +E L LL QKEV +RI A      +  +SV      K+  + D+SP  F PSP
Sbjct: 127 GFFPETRYERLVLLLQKEVADRILAMPGQSSFSAMSVRVQLLCKSRSVCDVSPKCFKPSP 186

Query: 200 KVTSTVI-----HFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENL 249
           KV S V+      F   LN  I   +ESL    + AF  RRK LR +L  +      E+L
Sbjct: 187 KVHSKVVVIEPFAFSERLNVDIEKRVESL---LRTAFLGRRKKLRNTLASIRPLNQLESL 243

Query: 250 LHQAGIETNLRAENLS 265
             Q GI  N R + +S
Sbjct: 244 ADQLGISLNQRPQEIS 259


>gi|323453421|gb|EGB09293.1| hypothetical protein AURANDRAFT_13505 [Aureococcus anophagefferens]
          Length = 255

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 125/262 (47%), Gaps = 16/262 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           PK+ +GQN+L D N   KI +S G  S  G  V+E+G G G LT++LL     +++ +E 
Sbjct: 3   PKQSLGQNYLSDQNYATKIVDSLGDDSERGRRVVELGPGLGALTRLLLR-QYPEMVAVEI 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137
           D +   +L+     +P    ++  D L VD+ K        + +I NLPY I +++LF  
Sbjct: 62  DGRAVELLEQT---YPAPFTVLHSDVLAVDYTKLAAARGGRLSVIGNLPYYITSQILFCL 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                         +  Q EV  R+ A+  +  YG LSV+     +  + F I    F+P
Sbjct: 119 CDHHAS---VSRAVVTMQHEVALRLVAKPRTKDYGILSVVFQLYAQPKIAFKIPHTAFYP 175

Query: 198 SPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGENLLHQAG 254
            PKVTS +  I F      +P     L+ +   AF +RRK LRQSLK  L G  L  Q  
Sbjct: 176 QPKVTSALVAIDFPEGGVDLPVDPRKLRTVVTTAFRQRRKMLRQSLKGILNGATLPDQFA 235

Query: 255 IETNLRAENLSIEDFCRITNIL 276
            +   R E L+  +F  +T  +
Sbjct: 236 TK---RPEELAPAEFLDLTGAI 254


>gi|292656864|ref|YP_003536761.1| dimethyladenosine transferase [Haloferax volcanii DS2]
 gi|291372487|gb|ADE04714.1| dimethyladenosine transferase [Haloferax volcanii DS2]
          Length = 287

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 22/249 (8%)

Query: 27  QNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           Q+FL+D  ++ +I        D   V+EIG GPG LT  LL + A +V V+E+D+ F   
Sbjct: 34  QHFLVDDRVVDRIPTYLPEEADRSHVLEIGGGPGVLTDRLLGV-ADRVTVVEQDRTFAAH 92

Query: 86  LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+         +RL +++ DAL VD  +F         ++NLPY I + + F  +     
Sbjct: 93  LRREFADEVESDRLTVVEGDALDVDLPEF------TACVSNLPYGISSEISFRLL----- 141

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P  + L L+FQKE GER+ A+  +  YGRLSV T    +  +   +    F P P V S
Sbjct: 142 -PRGKPLVLMFQKEFGERMAAEAGTSEYGRLSVSTQHYGEVELCEHVPREAFDPKPAVQS 200

Query: 204 TVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
            V+   P         E+      +  F +RRKT+R  ++     N  H +G+       
Sbjct: 201 VVVRITPREPEYEVDDEAFFLDFVKALFTQRRKTIRNGIR-----NTAHISGLSDPEAVV 255

Query: 263 NLSIEDFCR 271
             + ED  R
Sbjct: 256 EAADEDVLR 264


>gi|295838307|ref|ZP_06825240.1| dimethyladenosine transferase [Streptomyces sp. SPB74]
 gi|295826962|gb|EFG65164.1| dimethyladenosine transferase [Streptomyces sp. SPB74]
          Length = 301

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++   +  TV+E+G G G+LT  LL + 
Sbjct: 13  IRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPGLGSLTLALLEVA 72

Query: 70  ARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L    +    +   R  ++  DAL+V   +     +P  ++ANL
Sbjct: 73  A-DVTAVEIDGTLAAALPATVAARLPEKAERFRLVHSDALRV---RELPGPAPTALVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  + +P    +L ++ Q EV +R+ A   S  YG  SV   W     
Sbjct: 129 PYNVAVPVLLHML--EHFPSVERTL-VMVQAEVADRLAAPPGSRVYGVPSVKAAWYAHVK 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238
               I   VF+P+P V S ++  +    P+       +   +   AF +RRK LR     
Sbjct: 186 RAGSIGRSVFWPAPNVDSGLVSLVRREEPLTTSASRREVFAVVDAAFAQRRKGLRAALAG 245

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +      E  L  AG+    R E+L++E+F RI  
Sbjct: 246 WAGSAAAAEEALRAAGVSPLARGESLTVEEFARIAE 281


>gi|78212718|ref|YP_381497.1| dimethyladenosine transferase [Synechococcus sp. CC9605]
 gi|119365857|sp|Q3AKE0|RSMA_SYNSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78197177|gb|ABB34942.1| dimethyladenosine transferase [Synechococcus sp. CC9605]
          Length = 274

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 119/253 (47%), Gaps = 11/253 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++LLD ++L++I E++       V+E+G G G LT+ LL  G + V  IE D+ 
Sbjct: 9   RKRFGQHWLLDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+D     P    + Q D L+   E   +     +++AN+PYNI   LL   +   
Sbjct: 69  LVQGLRDRFVVQPG-FSLHQGDVLEAPLE-LSDGRIADKVVANIPYNITGPLLERLVGRL 126

Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             P  P ++ L LL QKEV ERI A+     +  LSV      +   +  + P  F P P
Sbjct: 127 DRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLARCHSVCPVPPRCFQPPP 186

Query: 200 KVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQ 252
           KV S VI   P       +P     ++ + ++AF  RRK LR +L  +   N    L   
Sbjct: 187 KVQSEVICLEPLPASERVMPDLAARVESLLKQAFLARRKMLRNTLAGVAEPNRLKDLAAS 246

Query: 253 AGIETNLRAENLS 265
           AG     R + L+
Sbjct: 247 AGFSLQQRPQELA 259


>gi|150020142|ref|YP_001305496.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429]
 gi|149792663|gb|ABR30111.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429]
          Length = 258

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 118/233 (50%), Gaps = 17/233 (7%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  Y +   K +GQNFL + +I KKI E +   +   V+EIG G G LT+ L+  GA K+
Sbjct: 7   LKEYNVKLLKGLGQNFLTNTHIAKKIVERADINENDVVLEIGPGAGTLTEFLVLTGA-KI 65

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           I +E D++  PIL+  +    + +EII  D LK D      +    +++AN+PY+I   +
Sbjct: 66  IAVEIDKRLKPILERFNKY--DNIEIIFVDFLKFDVS---VLPKGFKVVANIPYSITGMI 120

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR--LSVLTGWRTKATMMFDIS 191
           L   + +D     +    L+ QKEVG+R+      P   R  LSV+    T    +FD+S
Sbjct: 121 LKKILFSD-----FSKAVLMVQKEVGDRLLL---PPGADRNFLSVVVQSYTMVRKVFDVS 172

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
              F P PKV S V+ F          ++       + FG +RKTL+ +LKR 
Sbjct: 173 KGNFVPRPKVDSVVLEF-EKTEDFKYDIKEFWDFVSKCFGAKRKTLQNNLKRF 224


>gi|15679326|ref|NP_276443.1| dimethyladenosine transferase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|27151554|sp|O27381|RSMA_METTH RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|2622432|gb|AAB85804.1| dimethyladenosine transferase [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 273

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 15/232 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  Y +  ++ +GQN+L+D    ++I E +   +   V+EIG G G LT  +  L A
Sbjct: 9   REVLRKYGVRLRRSLGQNYLIDEVKRQRILEYADLREDDRVLEIGPGIGTLTLPMAEL-A 67

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
             V  IE D     IL D      + +++I  DAL+VDF +F       ++++NLPY I 
Sbjct: 68  GHVTAIESDPLIAAILMD--RLQVDNVDVIVGDALRVDFPEFN------KVVSNLPYQIS 119

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + + F  +  D     +E   L++QKE   R+ A+  +  Y RLSV+  +  +  ++  +
Sbjct: 120 SPITFRLLEHD-----FELAVLMYQKEFARRMVAEPGTREYSRLSVMVHFLAEVEIVDYL 174

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL 241
            P  FFP P+V S V+   P     P  LE + + + Q    K  K+LR+S 
Sbjct: 175 KPGCFFPRPRVESAVVTLKPTGFRAPAFLEDVCRALFQHRKKKTSKSLRESF 226


>gi|308807092|ref|XP_003080857.1| Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri]
 gi|116059318|emb|CAL55025.1| Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri]
          Length = 344

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 13/218 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I+  I + +G      V+EIG G GNLT  LL    +KV+ +E D + 
Sbjct: 43  KSFGQHILKNPAIVTAIIDKAGVKSTDVVLEIGPGTGNLTTKLLD-ACKKVVAVEFDPRM 101

Query: 83  FPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              L+      P   ++LEIIQ D LKVD   +F++      +AN+PY I + L+F  ++
Sbjct: 102 VLELRRRVQGDPVWNSKLEIIQGDFLKVDLP-YFDVC-----VANVPYQISSPLIFKLLA 155

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P + S TL+FQ+E   R+ A      Y RLSV T    +   +  +  + F P P
Sbjct: 156 HR---PMFRSATLMFQREFAMRLVAPPGDSLYCRLSVNTQLLARTQHILKVGKNNFRPPP 212

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           KV S+V+   P    IP   +    + +  FG++ KTL
Sbjct: 213 KVDSSVVRLEPRHPQIPVNFKEWDGLVRFCFGRKNKTL 250


>gi|76802475|ref|YP_327483.1| dimethyladenosine transferase [Natronomonas pharaonis DSM 2160]
 gi|119365037|sp|Q3IPM0|RSMA_NATPD RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|76558340|emb|CAI49930.1| probable dimethyladenosine transferase [Natronomonas pharaonis DSM
           2160]
          Length = 274

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 110/234 (47%), Gaps = 22/234 (9%)

Query: 27  QNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           Q+FL+D  +L ++      S D   V+EIG G G LT  LL + A +V VIE+D      
Sbjct: 21  QHFLIDDRVLDRLPGYLPDSADTDHVLEIGGGTGALTDRLLDV-ADRVTVIERDPGLATF 79

Query: 86  LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L D          L +I+ DAL+V    F         ++NLPY + + + F  +     
Sbjct: 80  LTDEFADEIEAGSLTVIEGDALEVPLPDF------TASVSNLPYGVSSEIAFRLL----- 128

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P    L L+FQ+E  ER+ A+  +  YGRLSV  G      ++  +    F P P V S
Sbjct: 129 -PEKRPLVLMFQQEFAERMAAEPGTDEYGRLSVTAGHYADVEVVEPVPKEAFSPPPAVES 187

Query: 204 TVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            V+   P   P     + L  ++ +  F +RRKT+R +++     N  H +GIE
Sbjct: 188 AVVRTTPREPPYEVPDDELFMRLVRAVFTQRRKTMRNAVR-----NTTHISGIE 236


>gi|203284494|ref|YP_002222234.1| dimethyladenosine transferase [Borrelia duttonii Ly]
 gi|201083937|gb|ACH93528.1| dimethyladenosine transferase [Borrelia duttonii Ly]
          Length = 274

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 14/281 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N  +S+K +L +  I P+K  GQN+L++ NI +KI ++        + EIG G G
Sbjct: 1   MNINYNSINSIKNVLKNKNIAPRKIWGQNYLINENIREKIIDALDIKKNEKIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T  LL   A  +   E D ++  IL +   Q  N  ++I+ D LK   ++  +I+   
Sbjct: 61  AMTATLLN-KANFLTAFEIDPKYSEILNEKFGQLKN-FKLIEGDFLKTYKQEKTSIN--- 115

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I++NLPYNI ++++   I  +        +    QKE+ +R+ A++ + +Y   ++L  
Sbjct: 116 KIVSNLPYNIASKVISTLIEDEILT----HMVFTVQKELADRMIAKEGNKNYSSFTILVQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI    F+P PKV ST I   P    I    +   K+ +  F  RRK L+ 
Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTIKLTPCKGNIK-NFQIFNKLIRTVFTSRRKKLKN 230

Query: 240 S-LKRLGGENLLHQAGIETNL--RAENLSIEDFCRITNILT 277
           + +  +  EN+L +  ++  L  R E +S+++F  I N LT
Sbjct: 231 TIINFIKNENILKEDFLKNFLDKRPEEISVKEFITIANKLT 271


>gi|15220982|ref|NP_171690.1| PFC1 (PALEFACE 1); mRNA
           (2'-O-methyladenosine-N6-)-methyltransferase
           [Arabidopsis thaliana]
 gi|3005590|gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana]
 gi|26449914|dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
 gi|28827572|gb|AAO50630.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
 gi|332189223|gb|AEE27344.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
           thaliana]
          Length = 343

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 143/292 (48%), Gaps = 30/292 (10%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           HS    L+     P+K +GQ+++L+ +I  ++A ++   +G  V+EIG G G+LT +L+ 
Sbjct: 58  HSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNVLIN 117

Query: 68  LGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFF-------NISS 117
           LGA  V+ IEKD    P + D+ S+     ++ +++Q+D +K               +S 
Sbjct: 118 LGA-TVLAIEKD----PHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILETRRLSH 172

Query: 118 P----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172
           P     ++++NLP+NI T ++   +        +  + LL Q E   R+      +  Y 
Sbjct: 173 PDSALAKVVSNLPFNISTDVVKLLLPMGD---IFSKVVLLLQDEAALRLVEPALRTSEYR 229

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEA 229
            +++L  + ++    F +    FFP PKV + V+ F    P   P     ++   +   A
Sbjct: 230 PINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKNFFSLVNSA 289

Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           F  +RK LR+SL+ +      E  L  AG+    R E L+++DF ++ N++ 
Sbjct: 290 FNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLDDFVKLHNVIA 341


>gi|14591574|ref|NP_143656.1| dimethyladenosine transferase [Pyrococcus horikoshii OT3]
 gi|3258259|dbj|BAA30942.1| 290aa long hypothetical dimethyladenosine transferase [Pyrococcus
           horikoshii OT3]
          Length = 290

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 127/246 (51%), Gaps = 23/246 (9%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +LS Y I P+  +GQ+FL+  ++++K  E++   +   ++E+G G G LT  L    A+K
Sbjct: 30  LLSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAK-RAKK 88

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE DQ+   ILK   S   N ++IIQ DA++V++ KF       ++++N+PY I + 
Sbjct: 89  VYTIEIDQKIIEILKKEYSW--NNVKIIQGDAVRVEWPKFN------KVVSNIPYKISSP 140

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
             F  +  D     +E   +++Q E   R+ A+  S +Y RLS++        ++  I  
Sbjct: 141 FTFKLLKTD-----FERAVVMYQLEFALRMVAKPGSRNYSRLSLMAQALGNVEIVMKIGK 195

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
             F+P PKV S ++   P  + I       + + +  F  RRKT+ ++LK     + +H 
Sbjct: 196 GAFYPRPKVDSALVLIEPRKDKIVLN----ENLVKALFQHRRKTVPRALK-----DSIHM 246

Query: 253 AGIETN 258
            G+  +
Sbjct: 247 LGVSKD 252


>gi|282865480|ref|ZP_06274531.1| dimethyladenosine transferase [Streptomyces sp. ACTE]
 gi|282559524|gb|EFB65075.1| dimethyladenosine transferase [Streptomyces sp. ACTE]
          Length = 326

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+EIG G G+LT  LL   
Sbjct: 15  IRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPEDVVVEIGPGLGSLTLALLE-A 73

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V+ +E D      L   ++++ P   +R  ++  DA+ V         +P  ++ANL
Sbjct: 74  ADRVVAVEIDDVLAGALPATVAARLPVRADRFALVHSDAMLV---TELPGPAPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L   +  + +P    +L ++ Q EV +R+ A+  +  YG  SV   W     
Sbjct: 131 PYNVAVPVLLTML--ERFPSIERTL-VMVQAEVADRLAAKPGNKVYGVPSVKAAWYADVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238
               I   VF+P+P V S ++  +    PI       +   +   AF +RRKTLR     
Sbjct: 188 RAGSIGRTVFWPAPNVDSGLVSLVRRTEPIRTTASRTEVFAVVDAAFAQRRKTLRAALAG 247

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +      E  L  AG+    R E L++E+F  I  
Sbjct: 248 WAGSAAAAETALVAAGVSPQARGEALTVEEFAAIAE 283


>gi|268323689|emb|CBH37277.1| Probable dimethyladenosine transferase [uncultured archaeon]
          Length = 250

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 134/268 (50%), Gaps = 23/268 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTL 68
           K IL    I   + +GQ FL+D ++  ++ E  S GS D   V+EIGAG G++T+ L   
Sbjct: 4   KRILMDRGIRAVRSLGQYFLVDNDVAARMVEYASVGSED--LVLEIGAGLGSVTEEL-AR 60

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A++V  +EKD++   IL++       ++E+I+ D +K++  +F       +++A++PY+
Sbjct: 61  KAKRVYAVEKDKELCEILREQYVDKKGKIEVIEADIMKLELPEF------DKVVASIPYS 114

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + + + +  +  +     +E   LL+QKE  +++TA+  S  YGRLSV+        ++ 
Sbjct: 115 LSSPITYKLLLHN-----FELAVLLYQKEFAQKMTAEPRSHLYGRLSVIAQALADIEILE 169

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            +    F PSP V + ++ F      +        +    AFG RRK +R   +      
Sbjct: 170 IVHRDAFCPSPPVKTAIVRFTEKKKRLVEDKREFIEFVSFAFGHRRKMMRHIFRTSDALK 229

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
            L +       R E LS E+F R+ +I 
Sbjct: 230 DLAK-------RPEELSPEEFARLFSIF 250


>gi|229816446|ref|ZP_04446747.1| hypothetical protein COLINT_03499 [Collinsella intestinalis DSM
           13280]
 gi|229807988|gb|EEP43789.1| hypothetical protein COLINT_03499 [Collinsella intestinalis DSM
           13280]
          Length = 321

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 134/287 (46%), Gaps = 27/287 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQML 65
           + + +L  + +  K  +GQNFL+D +++++I   AE +GS     V+E+G G G LT  L
Sbjct: 38  ATREMLEAFGLATKHRLGQNFLIDNHVIERIMALAELTGSE---RVLEVGPGIGTLTLAL 94

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIA 123
           +   AR V  IE D +  P+L   +  H N    I  DAL V            P  ++A
Sbjct: 95  VQEAAR-VTSIEMDTELEPVLSAHAMDHSN-FRFIMGDALAVPPVAIAEALDGEPELLVA 152

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   ++  +    T P    ++ ++ QKEV +RI A   +  YG  +V      +
Sbjct: 153 NLPYNVAATIILQFF--QTMPSLRRAVVMV-QKEVADRIAAAPGTKAYGAYTVKLSLYGE 209

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--------LKKITQEAFGKRRK 235
            T  F++ P  F P+P V S V+  I  ++      E         + ++   AF +RRK
Sbjct: 210 VTGRFEVPPRCFMPAPHVDSAVVR-IDRVDVSDAEGEGAAPADAAAVARVVDAAFAQRRK 268

Query: 236 TLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILT 277
           T+R S+   G +           GI    RAE L+ EDF  +   LT
Sbjct: 269 TIRNSMSSNGFDKDALDAAFEACGISPTARAEALTTEDFIALAASLT 315


>gi|257784886|ref|YP_003180103.1| dimethyladenosine transferase [Atopobium parvulum DSM 20469]
 gi|257473393|gb|ACV51512.1| dimethyladenosine transferase [Atopobium parvulum DSM 20469]
          Length = 314

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 132/292 (45%), Gaps = 35/292 (11%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            + K  L  + +  K  +GQNFL+  +I++KI + +       V+E+G G G LT  LL 
Sbjct: 16  RATKETLERFGLATKYRLGQNFLVQDHIIEKIVQLAEVRPTDVVVEVGPGLGTLTVALLD 75

Query: 68  LGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISS-------- 117
             A  V  +E D +   +L D++ +  HP+   ++  DAL +  +K              
Sbjct: 76  -NALAVCSLEADPELEQVL-DVTCKEPHPDSFVLVMGDALAITSQKLAEAYGVLPAVAQS 133

Query: 118 -------PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
                  P + ++NLPY +   L+  +       P  E   ++ Q EV +RI A+ ++  
Sbjct: 134 AIPVTPMPTKFVSNLPYQVAATLILKFFQ---ELPSLERAVVMVQAEVADRIAAKPSTKA 190

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLK----- 223
           YG  +       + T  F++ P  F P P+V S V+        NP+     S +     
Sbjct: 191 YGAYTAKLSLFAQVTGRFEVGPGNFMPPPRVNSAVVRLDRTEARNPLTSEFLSEEELLHA 250

Query: 224 -KITQEAFGKRRKTLRQSLKRLG-GENLLHQA----GIETNLRAENLSIEDF 269
            ++   AF +RRKT+R S+   G  ++ L QA    GI    RAE L+ +DF
Sbjct: 251 MRVIDAAFAQRRKTIRNSMSASGFDKDKLDQAFLATGIAPTARAEVLTSQDF 302


>gi|167754973|ref|ZP_02427100.1| hypothetical protein CLORAM_00477 [Clostridium ramosum DSM 1402]
 gi|237735300|ref|ZP_04565781.1| dimethyladenosine transferase [Mollicutes bacterium D7]
 gi|167705023|gb|EDS19602.1| hypothetical protein CLORAM_00477 [Clostridium ramosum DSM 1402]
 gi|229381045|gb|EEO31136.1| dimethyladenosine transferase [Coprobacillus sp. D7]
          Length = 268

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 135/272 (49%), Gaps = 20/272 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL  Y +   K  GQNFL+D+NI+ KI  S+       VIE+G G G LTQ+L     
Sbjct: 11  KYILEKYHLNALKKYGQNFLIDVNIINKIVTSAKIDQTTAVIEVGPGIGALTQVLGRYSG 70

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            KV   E D++F P+ ++  +Q  + +EII  D ++ D     ++       + ++ANLP
Sbjct: 71  -KVTSFEIDERFMPVYQEFLNQ--DNIEIIFGDFMEQDIKPIVDQLKQRYQKVCLVANLP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I T ++   +  +      + + ++ QKEV  ++T    +P    L ++         
Sbjct: 128 YYITTAIIEKVVLGNFG---IDEMIVMVQKEVALKMTGIYKNP----LLLMIKDMGTIEY 180

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-- 244
           +F ++ +VF P+P V S ++     L   P     L ++    F +RRKT+  +LK+   
Sbjct: 181 LFTVNKNVFMPAPHVDSAILKI--ELKKAPDL--KLYEVLNICFKQRRKTILNNLKQSYE 236

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             E +L Q GIE   R+E L + DF  IT ++
Sbjct: 237 EAEEILLQTGIENRKRSEELELADFKNITKMI 268


>gi|284165664|ref|YP_003403943.1| dimethyladenosine transferase [Haloterrigena turkmenica DSM 5511]
 gi|284015319|gb|ADB61270.1| dimethyladenosine transferase [Haloterrigena turkmenica DSM 5511]
          Length = 284

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 23/237 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFF 83
           Q+FL+D  +L ++      +D  T  V+EIG G G LT  LL +G   KV V+E+D++  
Sbjct: 21  QHFLVDDRVLDRLPTYLQEIDADTDHVLEIGGGTGALTDRLLAMGDEGKVTVVERDRELA 80

Query: 84  PILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L++  +       L +I+ DAL+VD  +F         ++NLPY + + + F  +   
Sbjct: 81  EFLREEFADEIAAGNLTVIEGDALEVDLPEF------TASLSNLPYGVSSEITFRLL--- 131

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P    L L+FQ+E  ER+ A+  +  YGRLSV T       ++  I    F P P V
Sbjct: 132 ---PEGRPLVLMFQREFAERMVAEPGTSEYGRLSVSTQHYAAPEIVETIPKEAFSPPPAV 188

Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            S V+   P         E    +  +  F +RRKT+R +++     N  H  G+E 
Sbjct: 189 ESAVVRLEPRDPDYEVGDEEFFLRFVKALFTQRRKTIRNAIR-----NTAHITGLEA 240


>gi|27151557|sp|O59487|RSMA_PYRHO RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
          Length = 268

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 127/246 (51%), Gaps = 23/246 (9%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +LS Y I P+  +GQ+FL+  ++++K  E++   +   ++E+G G G LT  L    A+K
Sbjct: 8   LLSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAK-RAKK 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE DQ+   ILK   S   N ++IIQ DA++V++ KF       ++++N+PY I + 
Sbjct: 67  VYTIEIDQKIIEILKKEYSW--NNVKIIQGDAVRVEWPKFN------KVVSNIPYKISSP 118

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
             F  +  D     +E   +++Q E   R+ A+  S +Y RLS++        ++  I  
Sbjct: 119 FTFKLLKTD-----FERAVVMYQLEFALRMVAKPGSRNYSRLSLMAQALGNVEIVMKIGK 173

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
             F+P PKV S ++   P  + I       + + +  F  RRKT+ ++LK     + +H 
Sbjct: 174 GAFYPRPKVDSALVLIEPRKDKIVLN----ENLVKALFQHRRKTVPRALK-----DSIHM 224

Query: 253 AGIETN 258
            G+  +
Sbjct: 225 LGVSKD 230


>gi|221060378|ref|XP_002260834.1| dimethyladenosine transferase [Plasmodium knowlesi strain H]
 gi|193810908|emb|CAQ42806.1| dimethyladenosine transferase, putative [Plasmodium knowlesi strain
           H]
          Length = 384

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+ KK+ GQ+ L +  IL KI  ++       V+EIG G GNLT  LL + A+KVI I+ 
Sbjct: 60  ILYKKH-GQHLLKNPGILDKILLAAKIKSSDVVLEIGCGTGNLTVKLLPI-AKKVITIDI 117

Query: 79  DQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D +    + K    +  N LE+ + DA+K  F +F +I +     AN+PY I + L+F  
Sbjct: 118 DARMVSEVKKRCLYEGYNNLEVYEGDAIKTVFPRF-DICT-----ANIPYKISSPLVFKL 171

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I+     P ++   L+FQKE  ER+ A     +Y RL+V      K   + ++    F P
Sbjct: 172 IA---HRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCKVIKICNVDRSSFNP 228

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            PKV S ++  IP  N      +    + +  F ++RKTL    KR    N+L  
Sbjct: 229 PPKVDSVILKLIPKENNFFVNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 283


>gi|212223555|ref|YP_002306791.1| dimethyladenosine transferase [Thermococcus onnurineus NA1]
 gi|226732633|sp|B6YTK7|RSMA_THEON RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|212008512|gb|ACJ15894.1| dimethyladenosine transferase [Thermococcus onnurineus NA1]
          Length = 272

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 16/234 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L +++S Y +     +GQNFL+  +I+++  E +       V+EIG G G LT  L +  
Sbjct: 5   LFSLISKYGLRANSDLGQNFLIVDDIIERNVERAELSGRDVVLEIGPGLGVLTDAL-SKR 63

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A KV  IEKD +   IL+     + + +EII+ DALKVDF +F       +I++NLPY I
Sbjct: 64  AGKVYAIEKDPRLVEILR--KEYNWSNVEIIEGDALKVDFPEFN------KIVSNLPYQI 115

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F ++        +E   L++Q E  +R+ A+    +Y RLS++   ++   ++  
Sbjct: 116 SSPITFRFLGYG-----FERAVLIYQLEFAQRMVARPGDRNYSRLSLMVQAKSYVELVER 170

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           I    F+P PKV S VI   P   P    +E  + + +  F  RR T+  +LK+
Sbjct: 171 IGRGAFYPRPKVDSAVIVLEP--KPKSEVIELNEDLVRALFQHRRSTVAAALKK 222


>gi|318060949|ref|ZP_07979670.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Streptomyces sp. SA3_actG]
 gi|318078811|ref|ZP_07986143.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Streptomyces sp. SA3_actF]
 gi|333026402|ref|ZP_08454466.1| putative dimethyladenosine transferase [Streptomyces sp. Tu6071]
 gi|332746254|gb|EGJ76695.1| putative dimethyladenosine transferase [Streptomyces sp. Tu6071]
          Length = 292

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 128/276 (46%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++   +  TV+E+G G G+LT  LL + 
Sbjct: 13  IRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPGLGSLTLALLEVA 72

Query: 70  ARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L    +    +      ++  DAL+V   +     +P  ++ANL
Sbjct: 73  A-DVTAVEIDDTLAAALPATVAARLPEKAAHFRLVHSDALRV---RELPGPAPTALVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  + +P    +L ++ Q EV +R+ A   S  YG  SV   W     
Sbjct: 129 PYNVAVPVLLHML--EHFPSVERTL-VMVQAEVADRLAAPPGSRVYGVPSVKAAWYAHVK 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR----- 238
               I   VF+P+P V S ++  +    P+       +   +   AF +RRK LR     
Sbjct: 186 RAGSIGRSVFWPAPNVDSGLVSLVRREEPLTTSASRREVFAVVDAAFAQRRKGLRAALAG 245

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +      E  L  AG+    R E+L++E+F RI  
Sbjct: 246 WAGSAAAAEEALRAAGVSPQARGESLTVEEFARIAE 281


>gi|297842936|ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335191|gb|EFH65608.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 342

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 143/292 (48%), Gaps = 30/292 (10%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           HS    L+     P+K +GQ+++L+ +I  ++A ++   +G  V+EIG G G+LT +L+ 
Sbjct: 57  HSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNVLIN 116

Query: 68  LGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFF-------NISS 117
           LGA  V+ IEKD    P + D+ S+     ++ +++Q+D +K               +S 
Sbjct: 117 LGA-TVLAIEKD----PHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILESRRLSH 171

Query: 118 P----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172
           P     ++++NLP+NI T ++   +        +  + LL Q E   R+      +  Y 
Sbjct: 172 PDSSLAKVVSNLPFNISTDVVKLLLPMGD---IFSKVVLLLQDEAALRLVEPALRTSEYR 228

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEA 229
            +++L  + ++    F +    FFP PKV + V+ F    P   P     ++   +   A
Sbjct: 229 PINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPSDYPDVSSTKNFFSLVNSA 288

Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           F  +RK LR+SL+ +      E  L  AG+    R E L+++DF ++ N++ 
Sbjct: 289 FNGKRKMLRKSLQHISSSPEIEKALGVAGLPVTSRPEELTLDDFVKLHNVIA 340


>gi|294660187|ref|NP_852792.2| dimethyladenosine transferase [Mycoplasma gallisepticum str.
           R(low)]
 gi|298286858|sp|Q7NC69|RSMA_MYCGA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|284811837|gb|AAP56360.2| dimethyladenosine transferase [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930252|gb|ADC30191.1| dimethyladenosine transferase [Mycoplasma gallisepticum str.
           R(high)]
          Length = 268

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 127/255 (49%), Gaps = 27/255 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P K  GQNFL+D NI+  + E+   ++   V+EIG G G +++ L+   A     IE D+
Sbjct: 16  PSKQRGQNFLIDQNIINNVVEAVSKINPSKVLEIGPGLGAISEQLIKRFADNYYAIELDK 75

Query: 81  QFF-----PILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLL 134
           + F      +LKD          I+  DAL++D++  F N+     ++ NLPYNI ++L+
Sbjct: 76  KLFHHLNERLLKD---------HILHADALEIDWKSIFDNLGDNPTMVGNLPYNISSKLI 126

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
             +I +      +    ++ QKE+G R+ A+ NS  Y   S L  +    + + +I+   
Sbjct: 127 KKFILST-----YRCAIIMVQKEMGLRLLAKINSKDYSAFSALCQYSLSVSKIIEINETA 181

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253
           F P PKV ST++ F+   +      E  +K  +  F  RRKT+  +LK      L+ Q+ 
Sbjct: 182 FIPQPKVRSTLL-FLEKKD--IAFNEGYEKFLKLIFLSRRKTILNNLKNNYDPKLIIQSL 238

Query: 254 ---GIETNLRAENLS 265
              G +   RA+ LS
Sbjct: 239 VSLGFKKTSRAQELS 253


>gi|82753583|ref|XP_727737.1| dimethyladenosine transferase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483724|gb|EAA19302.1| dimethyladenosine transferase, putative [Plasmodium yoelii yoelii]
          Length = 394

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+ KK+ GQ+ L +  IL KI  ++       V+EIG G GNLT  LL L A+KVI I+ 
Sbjct: 45  ILYKKH-GQHLLKNPGILDKIIMAAKIKSSDIVLEIGCGTGNLTIKLLPL-AKKVITIDI 102

Query: 79  DQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D +    + K    +  N LE+ + DA+K  F KF ++ +     AN+PY I + L+F  
Sbjct: 103 DARMISEVKKRCLYEGYNNLEVYEGDAIKTIFPKF-DVCT-----ANIPYKISSPLIFKL 156

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I+     P ++   L+FQKE  ER+ A     +Y RL+V      +   + ++    F P
Sbjct: 157 IA---HRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCRVIKVCNVDRSSFNP 213

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            PKV S V+  IP  N      +    + +  F ++RKTL    KR    N+L  
Sbjct: 214 PPKVDSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 268


>gi|307596557|ref|YP_003902874.1| dimethyladenosine transferase [Vulcanisaeta distributa DSM 14429]
 gi|307551758|gb|ADN51823.1| dimethyladenosine transferase [Vulcanisaeta distributa DSM 14429]
          Length = 276

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 135/270 (50%), Gaps = 19/270 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L +++   ++ P K + Q+F++D  I++ I        G  V+E+G G G LT  L  + 
Sbjct: 13  LMSLIMRNRLKPIKRLSQHFVVDPTIIRDIVNHIPR--GSKVLEVGTGIGILTYYLARV- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +VI IE D +   I + + S   N + IIQ DAL+V + +   +      ++N+PY+I
Sbjct: 70  ASQVITIEIDGRLVRIAEHVLSGL-NNVSIIQGDALRVPWPQVDAL------VSNVPYSI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + L+   I             L  Q+EV  R+T +  S  YGRLSV+T      +++  
Sbjct: 123 TSPLIMRIIKEGV-----PRALLTIQREVANRLTGEPGSDDYGRLSVITQCNYSVSILNT 177

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247
            +P  F+PSP+V S++I  +    P    +++L+ +T+  F  R + LR  L +  G   
Sbjct: 178 YAPDSFYPSPEVYSSLI-MMSKKEPCYDDMDALESVTKLLFRHRNRVLRWVLNKYLGPSA 236

Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNIL 276
            N +  AGI+ + R   L I +  +IT  L
Sbjct: 237 VNAVVNAGIDVSARVRQLGINELIKITGSL 266


>gi|87307877|ref|ZP_01090020.1| dimethyladenosine transferase [Blastopirellula marina DSM 3645]
 gi|87289491|gb|EAQ81382.1| dimethyladenosine transferase [Blastopirellula marina DSM 3645]
          Length = 303

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 134/284 (47%), Gaps = 39/284 (13%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P    GQNFL+D+N+L  I  S+       V+EIG G G+LT  +    A  VI +E D+
Sbjct: 23  PVSKHGQNFLIDMNLLDMIVSSADLGPQDVVLEIGTGTGSLTTRMAA-AAGHVITVEIDE 81

Query: 81  QFFP------------------ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             F                   +LK+ ++  P  +E I++   ++         S ++++
Sbjct: 82  HLFTLASEELFEFDNVTMLQFDVLKNKNAFRPEVMETIKEKLAEIP-------DSRLKLV 134

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+ T +L N + ++  P    S+T+  QKEV ERI A  ++  YG LS+    + 
Sbjct: 135 ANLPYNVATPILSNLLRSEITP---FSMTVTIQKEVAERIIAVPSTKDYGALSIWMQSQC 191

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLR-- 238
           +  ++  + P VF+P PK+ S +IH      L       E     T+  F  RRK LR  
Sbjct: 192 RCEIVRIMGPGVFWPRPKIDSAIIHLQVDDELRGRIPDREFFHHFTRAIFFHRRKFLRSV 251

Query: 239 ------QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 + L +   + ++ + G++ + RAE  + ++   ++ + 
Sbjct: 252 LMSAFKEQLTKTQVDEVIAENGLQPDARAEQFTPDEVLAMSEMF 295


>gi|15790240|ref|NP_280064.1| dimethyladenosine transferase [Halobacterium sp. NRC-1]
 gi|169235969|ref|YP_001689169.1| dimethyladenosine transferase [Halobacterium salinarum R1]
 gi|27151602|sp|Q9HQH1|RSMA_HALSA RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|226732584|sp|B0R506|RSMA_HALS3 RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|10580702|gb|AAG19544.1| dimethyladenosine transferase [Halobacterium sp. NRC-1]
 gi|167727035|emb|CAP13821.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Halobacterium salinarum
           R1]
          Length = 282

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 21/238 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P     Q+FL+D  +L +I   +   D   V+EIGAG G LT  LL++ A +V  +E+D+
Sbjct: 17  PNPDFDQHFLIDDRVLDRIPTYADGFDRGHVLEIGAGTGALTDRLLSV-ADRVTAVERDE 75

Query: 81  QFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
            +   L++    +     L+++  DAL VD   F         ++NLPY + + + F  +
Sbjct: 76  SYASFLREEFADAIAAGDLDVVAGDALAVDLPAF------TCAVSNLPYGVASEVTFRLL 129

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P  + + L++Q E  ER+ A   +  YGRLSV T      +++  +    F P 
Sbjct: 130 ------PAGKPMVLMYQLEFAERMAADPGTSEYGRLSVATQHYADVSIVETVPAAAFDPQ 183

Query: 199 PKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P+V S V+   P         E+      +  F +RRKT R +++     N  H +G+
Sbjct: 184 PRVESAVVRVTPRDPDYVVADEAFFLSFVKALFTQRRKTTRNAIR-----NTAHISGL 236


>gi|242060710|ref|XP_002451644.1| hypothetical protein SORBIDRAFT_04g005150 [Sorghum bicolor]
 gi|241931475|gb|EES04620.1| hypothetical protein SORBIDRAFT_04g005150 [Sorghum bicolor]
          Length = 359

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 124/268 (46%), Gaps = 20/268 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+ L +  ++  I   +G     TV+EIG G GNLT+ LL  G + V+ +E D +
Sbjct: 31  EKSKGQHILKNPALVDSIVAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVELDPR 90

Query: 82  FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L      HP  +RL++IQ D LK D   +F+I      +AN+PY I + L F  +S
Sbjct: 91  MVLELNRRFQGHPLSSRLKVIQGDVLKCDLP-YFDIC-----VANIPYQISSPLTFKLLS 144

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P +    ++FQ+E   R+ AQ     Y RLSV     ++ + +  +  + F P P
Sbjct: 145 HR---PIFRCAVIMFQREFAMRLVAQPGDTLYCRLSVNVQLLSRVSHLLKVGKNNFRPPP 201

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-------- 251
           KV S+V+   P     P   +    + +  F ++ +TL    K      LL         
Sbjct: 202 KVDSSVVRIEPRKPLPPVSFKEWDGLVRICFNRKNRTLGSLFKTKRVLELLEKNYKTMQS 261

Query: 252 -QAGIETNLRAENLSIEDFCRITNILTD 278
            Q   + ++  + +S +D   + N++ D
Sbjct: 262 LQLTRDADMGEQKMSADDVALLANMVED 289


>gi|239930763|ref|ZP_04687716.1| dimethyladenosine transferase [Streptomyces ghanaensis ATCC 14672]
 gi|291439129|ref|ZP_06578519.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291342024|gb|EFE68980.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 293

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 132/277 (47%), Gaps = 20/277 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL   
Sbjct: 16  VRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 74

Query: 70  ARKVIVIEKDQQFFPILKDISSQH-PNRLE---IIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V  +E D      L    +   P R E   ++  DA+ V         +P  ++ANL
Sbjct: 75  ADRVTAVEIDDVLAAALPATVAARVPGRAERFALVHSDAMHV---TELPGPAPTALVANL 131

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  +T+P    +L ++ Q EV +R+ A   S  YG  SV   W  +  
Sbjct: 132 PYNVAVPVLLHML--ETFPSIERTL-VMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVK 188

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLR---- 238
               I  +VF+P+P V S ++  +    P P    S ++   +   AF +RRKTLR    
Sbjct: 189 RAGAIGRNVFWPAPNVDSGLVSLVRRAEP-PKTTASRREVFAVVDAAFAQRRKTLRAALA 247

Query: 239 -QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
             +      E  L  AG+    R E+L++E+F RI  
Sbjct: 248 GWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAE 284


>gi|163783210|ref|ZP_02178204.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881544|gb|EDP75054.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 247

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 137/259 (52%), Gaps = 18/259 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQ+ L+   +L++IA S+  ++G   V+EIG G GNLT++LL    +++ V+E D 
Sbjct: 5   KKSYGQHLLVSKGVLERIA-SALEIEGKDIVVEIGGGTGNLTRVLLEHPLKRLYVLELDP 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               +++ +S    +RLE+I+ DA K DF    ++   ++++ NLPYN+G+ ++ N +  
Sbjct: 64  D---MVEKLSHIEDSRLEVIRADASKFDF---CSLGEDLKVVGNLPYNVGSLIVENVVFH 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                      L+ QKEV  +++  K S  +  + + T + T+  M   + P  F P PK
Sbjct: 118 HRCVSVA---VLMLQKEVALKLSG-KGSASWLSVFLNTFYETEYVM--SVPPRFFVPPPK 171

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           V S VI  +    P    ++  K    + F  RRK LR+ L     E+ L +AGI    R
Sbjct: 172 VDSGVIRCVRKEAPPELDMKRYKGFLTKLFADRRKMLRKKLP----EDTLSKAGISPKAR 227

Query: 261 AENLSIEDFCRITNILTDN 279
            E LS+EDF R+ N+  + 
Sbjct: 228 VEELSVEDFLRLYNVYEEE 246


>gi|323449377|gb|EGB05265.1| hypothetical protein AURANDRAFT_60268 [Aureococcus anophagefferens]
          Length = 312

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 18/232 (7%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           S + +   K +GQNFL +  I+  I E +      +V+EIG G GNLT  LL   A+K+ 
Sbjct: 19  SSHLLAANKDLGQNFLKNPAIVDAIVERAKLQPTDSVLEIGPGTGNLTVKLLA-QAKKLT 77

Query: 75  VIEKDQQFFPILKDISSQHPN-----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            +E D++   ++++++ +  N     RLE++  D LKV    +F++      +ANLPYNI
Sbjct: 78  CVEFDRR---MVREVAKRVENDPRKHRLEMVHGDVLKVALP-YFDVC-----VANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            +  LF  ++     P + S  ++FQ+E  +R++A+     Y RLSV T    K T +  
Sbjct: 129 SSPFLFKLLAHR---PHFRSAVIMFQEEFAQRLSAKPGDALYCRLSVNTQLLAKVTQLIK 185

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           +  + F P PKV S V+       P P        + +  F ++ KTLR + 
Sbjct: 186 VGRNNFRPPPKVDSRVVKIEVRNPPPPVNFVEWDGLVKLCFNRKNKTLRSTF 237


>gi|317124052|ref|YP_004098164.1| dimethyladenosine transferase [Intrasporangium calvum DSM 43043]
 gi|315588140|gb|ADU47437.1| dimethyladenosine transferase [Intrasporangium calvum DSM 43043]
          Length = 323

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 17/275 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K  GQNF++D N ++KI   +G      V+E+G G G+LT  LL + 
Sbjct: 32  IRELAERLDVRPTKQWGQNFVVDANTVRKIVRVAGVGPEDVVVEVGPGLGSLTLALLPV- 90

Query: 70  ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            R+V  IE D +    L    + +  ++  +L ++  DAL V          P  ++ANL
Sbjct: 91  VRQVTAIEVDPRLAGALEGTVRSLQPENAAKLRLVAADALTV---TRLPGPKPTALVANL 147

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYNI   ++ +++           + ++ Q EV ER+ A+     YG  S+   W     
Sbjct: 148 PYNISVPVVLSFLEQFA---SIRRVLVMVQLEVAERLAAKPGGKIYGVPSLKAAWYADVE 204

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           +   +  +VF+P+P V S ++  +    P      + + +    AF +RRK+LR +L   
Sbjct: 205 LAGRVGRNVFWPAPNVDSGLVSLVRRDPPDTTATRQEVFRCIDAAFLQRRKSLRGALASW 264

Query: 245 GGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274
            G        L  AG++   R E L I  F RI  
Sbjct: 265 AGSPARAEAALLAAGVDPKARGEQLDIVAFARIAE 299


>gi|83319298|ref|YP_424004.1| dimethyladenosine transferase [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|90110032|sp|P43038|RSMA_MYCCT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83283184|gb|ABC01116.1| dimethyladenosine transferase [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 266

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 129/269 (47%), Gaps = 23/269 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KKY GQNF+ DLN++ KI +         +IEIG G G LT+ L+     KV+VIE DQ
Sbjct: 3   AKKYYGQNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGALTKELVK-RFDKVVVIEIDQ 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFNWI 138
               ILK     H N LEIIQ D L++D ++  +      I II+N PY I + +LF  +
Sbjct: 62  DMVEILK-TKFNHSN-LEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFKTL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                         + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+P 
Sbjct: 120 QI---SDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPI 176

Query: 199 PKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGE 247
           PKV S +I       +   +N     +E ++ +    F  +RKT           +    
Sbjct: 177 PKVDSAIISLTFNNIYKKQINDDKKFIEFVRTL----FNNKRKTILNNLNNIIQNKNKAL 232

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             L    I +NLR E L I+++ ++ N++
Sbjct: 233 EYLKMLNISSNLRPEQLDIDEYIKLFNLI 261


>gi|256028569|ref|ZP_05442403.1| dimethyladenosine transferase [Fusobacterium sp. D11]
 gi|289766489|ref|ZP_06525867.1| dimethyladenosine transferase [Fusobacterium sp. D11]
 gi|289718044|gb|EFD82056.1| dimethyladenosine transferase [Fusobacterium sp. D11]
          Length = 264

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 129/264 (48%), Gaps = 17/264 (6%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +KV  IE D+
Sbjct: 6   KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCIEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   S   N   ++  D L+VD +K+ N  +  +++AN+PY I + ++   I +
Sbjct: 65  DLENTLRKKFSSKEN-YTLVMGDVLEVDLKKYINQGT--KVVANIPYYITSPIINKIIES 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K+    G L++   +  +A  +F I    F P P 
Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEAEYLFTIPREFFNPIPN 177

Query: 201 VTSTV--IHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252
           V S    I F           E L  K  + AF  +RK +  +L  LG      + +L+Q
Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEILNQ 237

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
             +  N RAEN+SI+ F  + NI 
Sbjct: 238 IEVSENERAENISIDKFIELINIF 261


>gi|319441627|ref|ZP_07990783.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Corynebacterium variabile DSM 44702]
          Length = 318

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 28/289 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--T 67
           ++ + +   I P K MGQNF++D N +++I  ++       VIE+G G G+LT  LL   
Sbjct: 17  IRALAAELDITPTKKMGQNFVIDPNTVRRIVSAAELSTDDHVIEVGPGLGSLTLALLEQV 76

Query: 68  LGARKVIVIEKDQQFFPIL-KDISSQHPNRLE---IIQDDALKVDFEKF--FNISSPIRI 121
            G   V  +E D++    L + I    P R +   +I  DAL +         + +P  +
Sbjct: 77  GGTGGVTAVELDKRLAARLPRTIVEFAPARADDVTVIDHDALTLTAADLAEAGVPAPTAL 136

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   +L + +    +P     L ++ Q EV +R+ A   S  YG  SV  G+ 
Sbjct: 137 VANLPYNVSVPVLLHLLQ--EFPSIRRVL-VMVQLEVADRLAASPGSKIYGVPSVKAGFY 193

Query: 182 TKATMMFDISPHVFFPSPKVTSTVI---HFIPHLNPIPCCL-----ESLKK----ITQEA 229
              +    I  +VF+P+PK+ S ++    +     P    L     E+L+K    +T  A
Sbjct: 194 GAVSKAGTIGKNVFWPAPKIDSGLVRIDRWTDSDRPWQDALTSHDPETLRKEVFAVTDAA 253

Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           F +RRKTLR +L    G     E +L  AGI+   R E L    F  + 
Sbjct: 254 FLQRRKTLRAALSGHFGSGADAEAVLTAAGIDPKERGEKLDTGSFVDLA 302


>gi|303279442|ref|XP_003059014.1| hypothetical protein MICPUCDRAFT_58407 [Micromonas pusilla
           CCMP1545]
 gi|226460174|gb|EEH57469.1| hypothetical protein MICPUCDRAFT_58407 [Micromonas pusilla
           CCMP1545]
          Length = 380

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 105/217 (48%), Gaps = 12/217 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I+  I E  G      V+EIG G GNLT  LL   A+KVI IE D + 
Sbjct: 32  KSYGQHILKNPMIVNAIVEKGGVKSTDVVLEIGPGTGNLTMRLLET-AKKVIAIEFDPRM 90

Query: 83  FPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L+   S   H + L+II  D LKVD   +F++      IAN PY I + L+F  +S 
Sbjct: 91  VVELERRVSGTPHGHNLKIISGDFLKVDLP-YFDVC-----IANCPYQISSPLVFKLLS- 143

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P + S TL+FQ+E   R+      P Y RLSV      + T +  +  + F P PK
Sbjct: 144 --HRPMFRSATLMFQREFAMRLCVNPGDPLYCRLSVNAQLLARTTHILKVGKNNFRPPPK 201

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           V S+V+   P    I         + +  FG++ KTL
Sbjct: 202 VDSSVVRIEPRSPMIDVNFREWDGLVRLCFGRKNKTL 238


>gi|170077519|ref|YP_001734157.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase
           [Synechococcus sp. PCC 7002]
 gi|226732632|sp|B1XIV9|RSMA_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|169885188|gb|ACA98901.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase
           [Synechococcus sp. PCC 7002]
          Length = 273

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 128/275 (46%), Gaps = 25/275 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQ++L D  IL +I  ++       V+EIG G G LT  LL      ++ +E D+
Sbjct: 3   PRKRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLP-QVEALLSVEIDR 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLLFN 136
                +       PN L +++ D L+ D  +F        +P +++AN+PYNI   +L  
Sbjct: 62  DLCKYMVKNYGDRPNFL-LLEADYLQTDINEFLGDFPQFQNPRKVVANIPYNITGPILEK 120

Query: 137 WISADTWP---PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            +     P   PF ES+ LL QKEVG+R+ A   +  +G L++   +      +  + P 
Sbjct: 121 LLGTIDRPNSNPF-ESIVLLIQKEVGDRLVAHPCTKAFGALTLRVQYLADCETVCVVPPK 179

Query: 194 VFFPSPKVTSTVIHFIPHLNPI------PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            F+P PKV S V+   P   P+      P  L +L K+    F  +RK LR +LK L   
Sbjct: 180 AFYPKPKVESVVVRLRPR--PLAQPAQNPKLLATLIKV---GFASKRKMLRNNLKSLYNP 234

Query: 248 NLLH----QAGIETNLRAENLSIEDFCRITNILTD 278
            +L        I    R E + +  +  +++ L D
Sbjct: 235 EILDPIFADLDISPQARGEEVDLLQWIALSDRLND 269


>gi|115481328|ref|NP_001064257.1| Os10g0183900 [Oryza sativa Japonica Group]
 gi|110288720|gb|ABG65951.1| dimethyladenosine transferase, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113638866|dbj|BAF26171.1| Os10g0183900 [Oryza sativa Japonica Group]
 gi|215704636|dbj|BAG94264.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218184228|gb|EEC66655.1| hypothetical protein OsI_32926 [Oryza sativa Indica Group]
          Length = 364

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 11/218 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+ L +  ++  I E +G     TV+EIG G GNLT+ LL  G + V+ +E D +
Sbjct: 35  EKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVELDPR 94

Query: 82  FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L       P  +RL++IQ D LK D   +F+I      +AN+PY I + L F  +S
Sbjct: 95  MVLELNRRFQGDPLASRLKVIQGDVLKCDLP-YFDIC-----VANIPYQISSPLTFKLLS 148

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P +    ++FQ+E   R+ AQ     Y RLSV     ++ + +  +  + F P P
Sbjct: 149 HR---PIFRCAVIMFQREFAMRLVAQPGDSLYCRLSVNVQLLSRVSHLLKVGRNNFRPPP 205

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           KV S+V+   P     P   +    + +  F ++ KTL
Sbjct: 206 KVDSSVVRIEPRKPLPPVSFKEWDGLVRLCFNRKNKTL 243


>gi|156102204|ref|XP_001616795.1| dimethyladenosine transferase [Plasmodium vivax SaI-1]
 gi|148805669|gb|EDL47068.1| dimethyladenosine transferase, putative [Plasmodium vivax]
          Length = 417

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+ KK+ GQ+ L +  IL KI  ++       V+EIG G GNLT  LL + A+KVI I+ 
Sbjct: 79  ILYKKH-GQHLLKNPGILDKILLAAKIKSSDVVLEIGCGTGNLTVKLLPI-AKKVITIDI 136

Query: 79  DQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D +    + K    +  N LE+ + DA+K  F +F +I +     AN+PY I + L+F  
Sbjct: 137 DARMVSEVKKRCLYEGYNNLEVYEGDAIKTVFPRF-DICT-----ANIPYKISSPLIFKL 190

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I+     P ++   L+FQKE  +R+ A     +Y RL+V      K   + ++    F P
Sbjct: 191 IA---HRPLFKCAVLMFQKEFADRMLANVGDSNYSRLTVNVKLFCKVVKICNVDRSSFNP 247

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            PKV S ++  IP  N      +    + +  F ++RKTL    KR    N+L  
Sbjct: 248 PPKVDSVILKLIPKENNFFINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 302


>gi|118619728|ref|YP_908060.1| dimethyladenosine transferase [Mycobacterium ulcerans Agy99]
 gi|118571838|gb|ABL06589.1| dimethyladenosine transferase KsgA [Mycobacterium ulcerans Agy99]
          Length = 274

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 123/260 (47%), Gaps = 24/260 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           ++K+   SG+     V+E+G G G+LT  LL  GA  V  +E D      L    ++H +
Sbjct: 1   MRKVVAVSGTTRSDQVLEVGPGLGSLTLALLERGA-AVTAVEIDPVLAARLPQTVAEHSD 59

Query: 96  ----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               RL ++  D L +  +   +   P  ++ANLPYN+    L + ++     P    +T
Sbjct: 60  SEIGRLTVVHHDILTLRRQDVAD--QPTAVVANLPYNVAVPALLHLLAEF---PSIRVVT 114

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           ++ Q EV ER+ A+     YG  SV  G+  +      +SP VF+P P+V S ++    H
Sbjct: 115 VMVQAEVAERLAAEPGGKEYGVPSVKVGFYGRVRRCGMVSPTVFWPIPRVYSGLVRIDRH 174

Query: 212 -LNPIPCCLESLKKITQE----AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRA 261
              P P   E+ ++   E    AF +RRKT R +     G      N L  A I+   R 
Sbjct: 175 ETTPWPTD-ENFRRQVFELVDIAFAQRRKTSRNAFLEWAGSGNESANRLLAASIDPARRG 233

Query: 262 ENLSIEDFCRITNILTDNQD 281
           E LSIEDF R   +LT + D
Sbjct: 234 ETLSIEDFVR---LLTRSAD 250


>gi|87302768|ref|ZP_01085579.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. WH 5701]
 gi|87282651|gb|EAQ74609.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. WH 5701]
          Length = 286

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 126/270 (46%), Gaps = 26/270 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D  +L++I  ++    G  V+E+G G G LT+ LL     ++  IE D+ 
Sbjct: 9   RKRFGQHWLTDAAVLERIVAAAELQPGERVLEVGPGRGALTERLLATALGELHAIELDRD 68

Query: 82  FFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L+    QH     R ++++ D L+       N+    +++AN+PYNI   LL   +
Sbjct: 69  LVAGLR----QHFAGDERFQLLEGDVLR------LNLPPADKVVANIPYNITGPLLERLV 118

Query: 139 SADTWP---PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
                P   P+   L LL Q+EVGERI A   S  +  LSV          +  + P  F
Sbjct: 119 GRLDRPLASPY-RRLVLLVQQEVGERIRAVAGSSAFSALSVRLQLLAHCRSVCAVPPRCF 177

Query: 196 FPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL- 250
            PSPKV S VI   P L P     P     L+ + +  F  RRK LR SL  L  E+ L 
Sbjct: 178 QPSPKVMSEVIVIDP-LPPSERLEPELAGRLEGLLKRCFAARRKMLRNSLAGLWPEDELS 236

Query: 251 ---HQAGIETNLRAENLSIEDFCRITNILT 277
               +AG+    R + LS + +  +T  L 
Sbjct: 237 ERAERAGVSLRQRPQELSPQRWVELTRQLC 266


>gi|68071473|ref|XP_677650.1| dimethyladenosine transferase [Plasmodium berghei strain ANKA]
 gi|56497848|emb|CAH94950.1| dimethyladenosine transferase, putative [Plasmodium berghei]
          Length = 381

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+ KK+ GQ+ L +  IL KI  ++       V+EIG G GNLT  LL L ++KVI I+ 
Sbjct: 72  ILYKKH-GQHLLKNPGILDKIIMAAKIKSSDIVLEIGCGTGNLTVKLLPL-SKKVITIDI 129

Query: 79  DQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D +    + K    +  N LE+ + DA+K  F KF ++ +     AN+PY I + L+F  
Sbjct: 130 DARMISEVKKRCLYEGYNNLEVYEGDAIKTIFPKF-DVCT-----ANIPYKISSPLIFKL 183

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I+     P ++   L+FQKE  ER+ A     +Y RL+V      +   + ++    F P
Sbjct: 184 IA---HRPLFKCAVLMFQKEFAERMLANVGDNNYSRLTVNVKLFCRVIKVCNVDRSSFNP 240

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            PKV S V+  IP  N      +    + +  F ++RKTL    KR    N+L  
Sbjct: 241 PPKVDSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 295


>gi|294155309|ref|YP_003559693.1| dimethyladenosine transferase [Mycoplasma crocodyli MP145]
 gi|291600503|gb|ADE19999.1| dimethyladenosine transferase [Mycoplasma crocodyli MP145]
          Length = 255

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 17/263 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +I  KK  GQNFL D NIL KI  S   L    V+EIG G G LT+ +L   A+ +   E
Sbjct: 4   EIFAKKKFGQNFLNDDNILNKIV-SIVDLKNENVLEIGPGRGALTRKILQ-DAKSLTSYE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+    ILK   +Q     ++++ D L  D   +        IIAN+PY I T +LF  
Sbjct: 62  IDRDLVDILKKEFNQK--NFKLVEGDFLNEDISNY----KDTWIIANIPYYITTDILFKI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +   +    ++   L+ QKEV ERI AQKNS  Y +LS+   +       F +    F P
Sbjct: 116 LENISS---FKGAILMVQKEVAERIVAQKNSQDYSKLSITLQYYATVKKEFIVPSKCFNP 172

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQA 253
           +P V S +I      N       +L +  +  F +RRK L  SLK        +++    
Sbjct: 173 APNVDSAIISLKFDKNKKWDI--TLNEFFKLCFLQRRKKLSYSLKTKFKIEKIKSVFETL 230

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
           G + ++R + LS+ED  ++ N L
Sbjct: 231 GFDESIRIQQLSLEDILKLFNKL 253


>gi|296134601|ref|YP_003641843.1| dimethyladenosine transferase [Thiomonas intermedia K12]
 gi|295794723|gb|ADG29513.1| dimethyladenosine transferase [Thiomonas intermedia K12]
          Length = 268

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 130/263 (49%), Gaps = 21/263 (7%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV-IEK 78
           + +K  GQ+FL+D  I+  I +    L G  ++EIG G G LT  LL    R   V I++
Sbjct: 17  VARKRFGQHFLIDQQIIHGIVDCINPLAGERLVEIGPGLGALTLALLQRIPRLAAVEIDR 76

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     +      Q P+++E+I+ DAL  DF  F ++ + +R++ NLPYNI T LLF+ +
Sbjct: 77  D-----LAARWRKQAPDKVELIEADAL--DF-NFASLGTDLRLVGNLPYNISTPLLFHLM 128

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                         + QKEV +R+ A      +GRLSV+  WR +   + D+ P  F P 
Sbjct: 129 EVAEQ---VRDQHFMLQKEVIDRMVAAPGGRDFGRLSVMLQWRYRMVNLLDVPPEAFDPP 185

Query: 199 PKVTSTVIHFIP-HLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--AG 254
           P+V S V+   P  +  +P      L  +   AF +RRK +R SL    G  L  Q  AG
Sbjct: 186 PQVDSAVVRMTPLPVQELPRLDRKLLSALVTAAFSQRRKLMRHSL----GPWLDTQGYAG 241

Query: 255 -IETNLRAENLSIEDFCRITNIL 276
             +   RAE +S  ++  +   L
Sbjct: 242 DFDLQRRAEEVSTAEYIALAQSL 264


>gi|23009722|ref|ZP_00050666.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 364

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 126/278 (45%), Gaps = 19/278 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D   ++KI  ++    G  V+E+G G G+LT  LL  G
Sbjct: 65  IRDLAGRLGVRPTKTLGQNFVHDGGTVRKIVRAADVRPGERVVEVGPGLGSLTLGLLEAG 124

Query: 70  ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V+ +E D      L D    H     +RLE++  DAL+V          P  ++ANL
Sbjct: 125 A-SVVAVEIDPVLARQLPDTVVTHVPDVGDRLEVVGADALEV---TSLPGEPPTALVANL 180

Query: 126 PYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           PYN+   +L  ++   D+     E + ++ Q EV +R+ A   S  YG  SV   W   A
Sbjct: 181 PYNVAVPVLLTFLERFDS----LERVLVMVQAEVADRLAAPPGSRTYGVPSVKAAWYADA 236

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKR 243
                I   VF+P P V S ++       P      E +  +   AF +RRK LR +L  
Sbjct: 237 RRAGTIGRSVFWPVPNVDSALVALDRREPPATAATREQVFAVVDAAFAQRRKMLRSALSG 296

Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L G       +L  A ++   R E L +  F R+   L
Sbjct: 297 LAGSASVAAEVLEAADVDPQARGEVLDVAAFARVAEQL 334


>gi|78184856|ref|YP_377291.1| dimethyladenosine transferase [Synechococcus sp. CC9902]
 gi|119365856|sp|Q3AXF3|RSMA_SYNS9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78169150|gb|ABB26247.1| dimethyladenosine transferase [Synechococcus sp. CC9902]
          Length = 274

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 127/274 (46%), Gaps = 21/274 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D  +L +I E++       V+E+G G G LT+ LL   A ++  IE D+ 
Sbjct: 9   RKRFGQHWLRDARVLDQIVEAARLQQDDCVLEVGPGRGALTERLLASPAAQIHAIELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLLFNW 137
               L D      +R  + + D L+         F N     +++AN+PYNI   LL   
Sbjct: 69  LVRGLHDRFGSE-SRFSLREGDVLEAPLHLVDGGFAN-----KVVANIPYNITGPLLARL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           I     P  P ++ L LL QKEV ERI A+     +  LSV        +++  + P  F
Sbjct: 123 IGRLDRPVEPTYDCLVLLLQKEVAERIRAKPGRSSFSALSVRMQLLADCSLVCPVPPRCF 182

Query: 196 FPSPKVTSTVIHF--IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG----EN 248
            P PKV S VI     P    +P  L S ++ + ++AF  RRK LR +L  +      E 
Sbjct: 183 QPPPKVQSEVILLKPFPPERRLPIDLASRVEALLKQAFQARRKMLRNTLAGVIDPQVLEP 242

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           L    GI    R + ++ E +  +   L  NQD+
Sbjct: 243 LAASVGISLQQRPQEVAAEAWVALARGL--NQDV 274


>gi|14520595|ref|NP_126070.1| dimethyladenosine transferase [Pyrococcus abyssi GE5]
 gi|27151615|sp|Q9V1P8|RSMA_PYRAB RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|5457811|emb|CAB49301.1| ksgA dimethyladenosine transferase [Pyrococcus abyssi GE5]
          Length = 269

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 19/276 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +LS Y I P   +GQ+FL+  +++ K  E +       V+E+G G G LT  L +  A+K
Sbjct: 8   LLSKYGIRPNDRIGQHFLIVKDVIDKAIEVAEVSKSDVVLEVGPGLGFLTDEL-SKRAKK 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   IL++  S   N +EIIQ DA+KV++  F       ++++N+PY I + 
Sbjct: 67  VFTIELDRRIIEILRNEYSW--NNVEIIQGDAVKVEWPSFN------KVVSNIPYQISSP 118

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
             F  +  +     +E   +++Q E   R+TA+    +Y RLS++T       ++  I  
Sbjct: 119 FTFKLLKME-----FERAVVMYQLEFALRMTAKPGDRNYSRLSLMTQALADVEIVMRIGK 173

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
             F+P PKV S ++   P  + I      +K + Q       K LR+S   LG +++   
Sbjct: 174 GAFYPKPKVDSALVLITPKKDRIELNESLVKALFQHRRKVVSKALRESAHMLGIKDVKTV 233

Query: 253 AGI-----ETNLRAENLSIEDFCRITNILTDNQDIA 283
             I      +N R  +L+ E+   I   L +++ I+
Sbjct: 234 KDILSSVPHSNKRVFHLTPEEVKEIEEYLREHRIIS 269


>gi|242247433|ref|NP_001156188.1| dimethyladenosine transferase-like [Acyrthosiphon pisum]
 gi|239790841|dbj|BAH71955.1| ACYPI005364 [Acyrthosiphon pisum]
          Length = 303

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 128/266 (48%), Gaps = 21/266 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+ KK  GQ+ L +  I++ + E S  L   TV+EIG G GNLT  LL    + VI  E 
Sbjct: 18  IMFKKDFGQHILKNPLIIQGMVEKSALLPTDTVLEIGPGTGNLTVKLLE-RVKTVIACEI 76

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    LK   +++ + N+L+I   D LK +   FFN+     ++AN+PY I + L+F 
Sbjct: 77  DVRLVAELKKRVMNTPYQNKLQIRVGDVLKSELP-FFNV-----LVANIPYQISSPLVFK 130

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +  ++  +  + F 
Sbjct: 131 LL---LHRPFFRCAVLMFQREFAYRLVAKPGDKLYCRLSINTQLLARVDLIMKVGKNNFR 187

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P PKV S V+   P   P P        +T+ AF ++ KTL    K    +N +    +E
Sbjct: 188 PPPKVESNVVRIEPRNPPPPINFNEWDGLTRIAFSRKNKTLGAIFK----QNAV-AVTLE 242

Query: 257 TNLRA----ENLSIEDFCRITNILTD 278
            N R     +N  IED   I   L D
Sbjct: 243 KNYRVYCSLKNQKIEDDFDIKQKLDD 268


>gi|124025654|ref|YP_001014770.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL1A]
 gi|166221688|sp|A2C1Z5|RSMA_PROM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|123960722|gb|ABM75505.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. NATL1A]
          Length = 291

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 11/235 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L+ ++ IP+K  GQ++L D  +L +I +++       V+E+G G G LT+ L+   A+ +
Sbjct: 7   LNDFRHIPRKRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQAKFI 66

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALK--VDFEKFFNISSPIRIIANLPYNIGT 131
             IE D+     LK     H N+  + + D L   +D E    I+   +++AN+PYNI  
Sbjct: 67  QAIELDRDLVIGLKK-RFNHQNKFSLREGDILSAPLDAENGVTIN---KVVANIPYNITG 122

Query: 132 RLLFNWISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            LL   I      P   +E+L LL QKEV +R+ A+  + ++  LSV      K   + D
Sbjct: 123 PLLKRLIGELRKAPENSFETLVLLMQKEVAQRLLARPGNSNFSALSVRVQLLAKCQDVCD 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL 241
           +    F P+PKV S V+   P  +  P   E    L+K+ + AF  RRK LR ++
Sbjct: 183 VPSKCFQPAPKVDSKVVMIKPFASIDPDFYEVGNLLEKLLKHAFAGRRKKLRNTI 237


>gi|313664894|ref|YP_004046765.1| dimethyladenosine transferase [Mycoplasma leachii PG50]
 gi|312949380|gb|ADR23976.1| dimethyladenosine transferase [Mycoplasma leachii PG50]
          Length = 266

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 130/269 (48%), Gaps = 23/269 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KKY GQNF+ DLN++ +I +         +IEIG G G LT+ L+     KV+VIE DQ
Sbjct: 3   AKKYYGQNFISDLNLINRIVDVLDQNKNQLIIEIGPGKGALTKELVK-RFNKVVVIEIDQ 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFNWI 138
               ILK  +    + LEIIQ D LK+D ++  +      I II+N PY I + +LF  +
Sbjct: 62  DMVEILK--AKFDYSNLEIIQTDVLKIDLKQLISKYDYEKISIISNTPYYITSEILFKTL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                         + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+P 
Sbjct: 120 QI---SDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNRKMFYPI 176

Query: 199 PKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGE 247
           PKV S +I       +   +N     +E ++ +    F  +RKT           +    
Sbjct: 177 PKVDSAIISLTFNDIYKKQINDDKKFIEFVRIL----FNNKRKTILNNLNNIIQNKNKAL 232

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             L  + I +NLR E L I+++ ++ N++
Sbjct: 233 EYLKISNISSNLRPEQLDIDEYIKLFNLI 261


>gi|42560564|ref|NP_975015.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|62900540|sp|Q6MUM4|RSMA_MYCMS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|42492060|emb|CAE76657.1| Dimethyladenosine transferase KsgA [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320542|gb|ADK69185.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. mycoides
           SC str. Gladysdale]
          Length = 266

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 130/269 (48%), Gaps = 23/269 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KKY GQNF+ DLN++ +I +         +IEIG G G LT+ L+     KV+VIE DQ
Sbjct: 3   AKKYYGQNFISDLNLINRIVDVLDQNKNQLIIEIGPGKGALTKELVK-RFDKVVVIEIDQ 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFNWI 138
               ILK     H N LEIIQ D L++D ++  +      I II+N PY I + +LF  +
Sbjct: 62  DMVEILK-AKFDHSN-LEIIQADVLEIDLKQLISKYDYEKISIISNTPYYITSEILFKTL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                         + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+P 
Sbjct: 120 QI---SDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPI 176

Query: 199 PKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGE 247
           PKV S +I       +   +N     +E ++ +    F  +RKT           +    
Sbjct: 177 PKVDSAIISLTFNDIYKKQINDDKKFIEFVRIL----FNNKRKTILNNLNNIIQNKNKAL 232

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             L+   I +NLR E L I+++ ++ N++
Sbjct: 233 EYLNTLNISSNLRPEQLDIDEYIKLFNLV 261


>gi|110668775|ref|YP_658586.1| dimethyladenosine transferase [Haloquadratum walsbyi DSM 16790]
 gi|118600870|sp|Q18GB5|RSMA_HALWD RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|109626522|emb|CAJ52985.1| dimethyladenosine transferase (rRNA methylation) [Haloquadratum
           walsbyi DSM 16790]
          Length = 296

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 119/261 (45%), Gaps = 25/261 (9%)

Query: 27  QNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           Q+FL+D  +L +I      S D   ++EIGAG G LT  LL +G   V VIE+D      
Sbjct: 43  QHFLIDDRVLDRIPTYLLDSTDTTHILEIGAGTGALTDRLLAVG-DTVTVIERDATLAAF 101

Query: 86  LKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L++  +      RL II+ DAL+V    F         I+NLPY I + +LF  + AD  
Sbjct: 102 LREEFAVMIDDGRLNIIEGDALEVTLPAFTTC------ISNLPYGISSEILFELLPADC- 154

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
                 L ++ Q+E GER+ A   +  YGRLSV         ++  + P  F P P V S
Sbjct: 155 -----PLIVMVQREFGERMAADPGTDAYGRLSVSAQHYATVEVVETVPPTAFAPEPAVDS 209

Query: 204 TVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL--- 259
            +I   P         E+   +  +  F +RRKT+R +++     ++L       N    
Sbjct: 210 ALIRAEPRDPDYTVTDETFFLRFVKAVFTQRRKTVRNAIRNTAHISMLDTPDAVVNAADE 269

Query: 260 -----RAENLSIEDFCRITNI 275
                RA +L+  +F  +  I
Sbjct: 270 ALLSQRAGDLTPSEFAELATI 290


>gi|254384979|ref|ZP_05000314.1| dimethyladenosine transferase dimethyltransferase) [Streptomyces
           sp. Mg1]
 gi|194343859|gb|EDX24825.1| dimethyladenosine transferase dimethyltransferase) [Streptomyces
           sp. Mg1]
          Length = 303

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL   
Sbjct: 25  IRELAAALGVRPTKQKGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLE-A 83

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V  +E D      L   I ++ P   +R  ++  DA+ V         +P  ++ANL
Sbjct: 84  ADRVTAVEIDDILAAALPATIEARMPQRKDRFALVHSDAMLV---TELPGPAPTALVANL 140

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L   +  D +P    +L ++ Q EV +R+ A+  +  YG  SV   W     
Sbjct: 141 PYNVAVPVLLTML--DRFPSIERTL-VMVQAEVADRLAAEPGNKVYGVPSVKANWYAHVK 197

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243
               I   VF+P+P V S ++  +    PI       +   +   AF +RRKTLR +L  
Sbjct: 198 RAGSIGRKVFWPAPNVDSGLVSLVRRAEPIKTSASKAEVFAVVDAAFAQRRKTLRAALAG 257

Query: 244 LGGENLLHQAGIET-----NLRAENLSIEDFCRITN 274
             G     +A +         R E+L++E+F  I  
Sbjct: 258 WAGSAAGAEAALVAAGVSPQARGESLTVEEFAAIAE 293


>gi|116070730|ref|ZP_01467999.1| 16S rRNA dimethylase [Synechococcus sp. BL107]
 gi|116066135|gb|EAU71892.1| 16S rRNA dimethylase [Synechococcus sp. BL107]
          Length = 274

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 126/273 (46%), Gaps = 19/273 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D  +L +I  ++       V+E+G G G LT+ LL   A ++  IE D+ 
Sbjct: 9   RKRFGQHWLRDARVLDQIVSAARLQQDDRVLEVGPGRGALTERLLASAAAQIHAIELDRD 68

Query: 82  FFPILKD---ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L D     S+   R   + D  L +    F N     +++AN+PYNI   LL   I
Sbjct: 69  LVQGLHDRFGAQSRFSLREGDVLDAPLHLGDGGFAN-----KVVANIPYNITGPLLARLI 123

Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                P  P ++ L LL QKEV ERI AQ     +  LSV        +++  + P  F 
Sbjct: 124 GRLDRPVEPTYDCLVLLLQKEVAERIRAQPGRSSFSALSVRMQLLADCSLVCPVPPRCFQ 183

Query: 197 PSPKVTSTVIHF--IPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG----ENL 249
           P PKV S VI     P    +P  L S ++ + ++AF  RRK LR +L  +      E L
Sbjct: 184 PPPKVQSEVILLKPFPPERRLPIDLASRVEALLKQAFQARRKMLRNTLAGVIEPQILEPL 243

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
               GI    R + ++ E +  +   L  NQD+
Sbjct: 244 AASVGISLQQRPQEVAAEAWVALARGL--NQDV 274


>gi|297735070|emb|CBI17432.3| unnamed protein product [Vitis vinifera]
          Length = 383

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 106/222 (47%), Gaps = 12/222 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   S      TV+EIG G GNLT  LL   A++V+ +E D + 
Sbjct: 50  KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQ-AAQRVVAVELDARM 108

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL+   ++H   ++L +I  DALK DF +F        ++AN+PY I + L+   +  
Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               PF  S TLL QKE   R+ A      + RL+V      +   + D+S   F P PK
Sbjct: 163 AN--PF-RSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           V S+V+   P        L      T+  F K+ KTL  + K
Sbjct: 220 VDSSVVTIRPKAEVPDVDLNEWCAFTRTCFSKKNKTLGATFK 261


>gi|297193911|ref|ZP_06911309.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720273|gb|EDY64181.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 286

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 132/276 (47%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+EIG G      + L   
Sbjct: 15  IRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVKPDDVVVEIGPG-LGSLTLGLLEA 73

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V+ +E D      L   ++++ P+   R  ++  DA+ V   +      P  ++ANL
Sbjct: 74  ADRVVAVEIDDVLAGALPATVAARLPDRASRFSLVHSDAMHV---QELPGPPPTALVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  D +P    +L ++ Q EV +R+ A   +  YG  SV   W ++  
Sbjct: 131 PYNVAVPVLLHML--DRFPSIERTL-VMVQAEVADRLAAGPGNKVYGVPSVKANWYSEVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKR 243
               I  +VF+P+P V S ++  +   +P+       +   +   AF +RRKTLR +L  
Sbjct: 188 RAGSIGRNVFWPAPNVDSGLVSLVRRTSPVATTASRAEVFAVVDAAFAQRRKTLRAALAG 247

Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274
             G        L  AG+    R E+L++E+F RI  
Sbjct: 248 WAGSPAAAEAALVAAGVSPQARGESLTVEEFARIAE 283


>gi|254431695|ref|ZP_05045398.1| dimethyladenosine transferase [Cyanobium sp. PCC 7001]
 gi|197626148|gb|EDY38707.1| dimethyladenosine transferase [Cyanobium sp. PCC 7001]
          Length = 300

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 119/265 (44%), Gaps = 18/265 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D  +L +I  ++    G  V+EIG G G LTQ LL   A  V  +E D+ 
Sbjct: 29  RKRFGQHWLTDAAVLDRIVAAAALAPGERVLEIGPGRGALTQRLLASDAAAVAAVELDRD 88

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+    +   R E+ Q DAL         +    +++AN+PYNI   LL   +   
Sbjct: 89  LVAGLQQRFGRD-ARFELHQGDALT------LALPPADKVVANIPYNITGPLLERLVGRL 141

Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             P  P +  L LL Q+EV ERI     S  Y  LSV      +   +  + P  F P P
Sbjct: 142 DHPVQPPYRRLVLLLQREVAERIRCSPGSASYSALSVRMQLLGECRSVCAVPPRCFQPPP 201

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQE----AFGKRRKTLRQSLKRLGGE----NLLH 251
           KV S VI   PH  P      +L + T++    +F  RRK LR SL  L  E     L  
Sbjct: 202 KVQSEVIVIEPH-GPARLPEAALARTTEQLLRRSFAARRKMLRNSLVGLVPEPELQGLAR 260

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
           +AGI    R + +    + R+   L
Sbjct: 261 EAGINLQQRPQEIEPAAWLRLAAGL 285


>gi|320166025|gb|EFW42924.1| dimethyladenosine transferase [Capsaspora owczarzaki ATCC 30864]
          Length = 313

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 12/221 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I+  I E +G  +  TV+EIG G GNLT  LL   ++KV+  E D + 
Sbjct: 32  KSFGQHILKNPLIVNGIIEKAGLRNTDTVLEIGPGTGNLTMKLLE-ASKKVVACEVDVRL 90

Query: 83  FPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L+   + + +   LEI+  D LK D   FF++      +AN+PY I +  +F  +  
Sbjct: 91  VAELQKRVMGTPYQRNLEILVGDVLKADL-PFFDVC-----VANMPYQISSPFVFKLL-- 142

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               PF+    L+FQKE  +R+ A+   P Y RLSV T    +   +  +  + F P P+
Sbjct: 143 -LHRPFFRCAVLMFQKEFAQRLYAKPGDPAYCRLSVNTQLLARVDHLMKVGRNNFRPPPQ 201

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           V S V+   P   P P   +    + +  F ++ KTL  + 
Sbjct: 202 VESAVVRIEPRNPPPPINFQEWDGLVRITFVRKNKTLHAAF 242


>gi|12045322|ref|NP_073133.1| dimethyladenosine transferase [Mycoplasma genitalium G37]
 gi|1346403|sp|P47701|RSMA_MYCGE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|3845058|gb|AAC72483.1| dimethyladenosine transferase [Mycoplasma genitalium G37]
 gi|166078652|gb|ABY79270.1| dimethyladenosine transferase [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 259

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 128/259 (49%), Gaps = 35/259 (13%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKD 79
           P + +GQNF ++L+++K+I     +L+   ++EIG G G LT  LL L    K I I+K 
Sbjct: 6   PSRKLGQNFTVNLSVIKRIFAFVKNLNPQAIVEIGVGKGALTNYLLKLKIPYKGIEIDKR 65

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              + +++ I ++     ++++ D LK DF  FF   SP+ +  N+PY+I + ++  ++ 
Sbjct: 66  LIEYLLVEKILTED----QLVKGDILKKDFNSFFENLSPL-LCGNIPYSITSPIINKFLE 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           +        S  L+ QKE   R+ A+ NS  Y        +    T +F I  H F P P
Sbjct: 121 SK-----LRSFVLMTQKEFANRLLAKVNSSDYSAFGAFCQYYLTITTVFKIDRHAFKPKP 175

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKIT---------QEAFGKRRKTLRQSLKRLGGE--- 247
           KV ST+I            LE  K ++         ++ F +RRK L  +LK        
Sbjct: 176 KVDSTLI-----------LLEKNKSVSYDFKFGLFLKQCFNQRRKMLINNLKHFFAVDYL 224

Query: 248 -NLLHQAGIETNLRAENLS 265
            N++ +  ++T++RA+ LS
Sbjct: 225 LNIIQKQNLKTSIRAQELS 243


>gi|296329439|ref|ZP_06871928.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153448|gb|EFG94278.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 264

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 130/266 (48%), Gaps = 21/266 (7%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +KV  +E D+
Sbjct: 6   KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   S   N   ++  D L+VDF+K+ N  +  +++AN+PY I + ++   I  
Sbjct: 65  DLENTLRKKFSSKEN-YTLVMGDVLEVDFKKYINQGT--KVVANIPYYITSPIINKIIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K+    G L++   +  ++  +F I    F P P 
Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGESEYLFTIPREFFNPIPN 177

Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250
           V S  I         + N I   L    K  + AF  +RK +  +L  LG      + +L
Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           +Q  +  N RAEN+SI+ F  + NI 
Sbjct: 236 NQIEVPENERAENISIDKFIELINIF 261


>gi|225431251|ref|XP_002267827.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 383

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 106/222 (47%), Gaps = 12/222 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   S      TV+EIG G GNLT  LL   A++V+ +E D + 
Sbjct: 50  KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQ-AAQRVVAVELDARM 108

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL+   ++H   ++L +I  DALK DF +F        ++AN+PY I + L+   +  
Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               PF  S TLL QKE   R+ A      + RL+V      +   + D+S   F P PK
Sbjct: 163 AN--PF-RSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           V S+V+   P        L      T+  F K+ KTL  + K
Sbjct: 220 VDSSVVTIRPKAEVPDVDLNEWCAFTRTCFSKKNKTLGATFK 261


>gi|210629940|ref|ZP_03296187.1| hypothetical protein COLSTE_00071 [Collinsella stercoris DSM 13279]
 gi|210160757|gb|EEA91728.1| hypothetical protein COLSTE_00071 [Collinsella stercoris DSM 13279]
          Length = 331

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 135/318 (42%), Gaps = 64/318 (20%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQML 65
           + + IL  + +  K  +GQNFL+D +++++I   AE +GS     V+E+G G G LT + 
Sbjct: 11  ATREILEAFGLATKHRLGQNFLIDNHVIERIMDLAELTGSE---RVLEVGPGIGTLT-LA 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRII 122
           L   A +V  IE D +  P+L   +  HPN    I  DAL V      +     S + ++
Sbjct: 67  LVQAAGRVTSIEMDSELEPVLSAHAIDHPN-FNFIMGDALAVPPAQIAEALGGESEL-LV 124

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++  +    T P    ++ ++ QKEV +RI A   +  YG  +V      
Sbjct: 125 ANLPYNVAATIILQFFQ--TMPSLRRAVVMV-QKEVADRIAAVAGTKVYGAYTVKLSLYG 181

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF-------------------------IPHLNPIPC 217
           + T  F++ P  F P+P V S V+                               + +  
Sbjct: 182 EVTGRFEVPPRCFMPAPHVDSAVVRIDRVGFPGTLSDRRVDAACGTDAPVSTAGSDGVLT 241

Query: 218 C-------------------LESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQA 253
           C                    E + ++   AF +RRKT+R S+   G +         Q 
Sbjct: 242 CDSNGGQDGASVLVLAGAPSAEDIARVVDAAFAQRRKTIRNSMSANGFDKAALDAAFAQC 301

Query: 254 GIETNLRAENLSIEDFCR 271
            I +  RAE LS  +F +
Sbjct: 302 DIASTARAETLSTIEFVQ 319


>gi|18978235|ref|NP_579592.1| dimethyladenosine transferase [Pyrococcus furiosus DSM 3638]
 gi|27151575|sp|Q8TH24|RSMA_PYRFU RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|18894050|gb|AAL81987.1| dimethyladenosine transferase (s-adenosylmethionine-6-n'
           [Pyrococcus furiosus DSM 3638]
          Length = 273

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 16/229 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           LS Y   P+  +GQNFL+  +++ K  E+S       V+E+G G G LT  L +  A KV
Sbjct: 9   LSKYNFSPRDKIGQNFLIMRDVIIKAVETSEIKKSDVVLEVGPGFGFLTDEL-SKRAGKV 67

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             IE D++   IL++    +   +EIIQ DA+K+++ +F       ++++N+PY I +  
Sbjct: 68  YAIELDKRIIEILEN--EYNWENVEIIQGDAVKIEWPEFN------KVVSNIPYQISSPF 119

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            F  +  D     +E   +++Q E  +R+ A+    +Y RLS++      A ++  I   
Sbjct: 120 TFKLLKHD-----FEKAVVMYQLEFAKRMVAKPGDRNYSRLSLMVNALANAKIVMKIGRG 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            F+P PKV S ++  +P   P    +E  + + +  F  RRK + ++LK
Sbjct: 175 AFYPKPKVDSALVLIVP--KPKDERIELNENLVKALFQHRRKLVSKALK 221


>gi|291529852|emb|CBK95437.1| dimethyladenosine transferase [Eubacterium siraeum 70/3]
          Length = 287

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 131/269 (48%), Gaps = 20/269 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL++  +  KIAE  G+   +  IEIG G G LT+ L      KV+ IE D   
Sbjct: 22  KSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGVLTRELAER-CEKVVAIEIDTGL 80

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPYNIGTRLLFNWIS 139
            PIL +   ++ N +E+I  D ++ D  K      P   + + ANLPY I + ++   + 
Sbjct: 81  KPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDMDVIVCANLPYYITSPVIMKLLE 139

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +  P   +++T++ Q E  +RI A   S   G ++    +  K   +F ++   F P+P
Sbjct: 140 -EKLP--IKAITVMVQLEAADRICAAVGSRECGAITASINYYAKPKKLFRVNRGSFMPAP 196

Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL-------KRLGGENL 249
            V S VI    +  P P  +++     ++ ++AF +RRK L   +       K +  E  
Sbjct: 197 NVDSAVISLERYEQP-PYKVDNEPLFFEVIKQAFAQRRKQLANPVSAYFKIPKAVLAEK- 254

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278
           + + GI    RAE L++ +  ++  I+ +
Sbjct: 255 MTEGGIPATARAEQLTMSELVKLYEIINE 283


>gi|260494381|ref|ZP_05814512.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_33]
 gi|260198527|gb|EEW96043.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_33]
          Length = 264

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 128/264 (48%), Gaps = 17/264 (6%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +KV  +E D+
Sbjct: 6   KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               IL+   S   N   ++  D L+VD  ++ N  +  +++AN+PY I + ++   I  
Sbjct: 65  DLENILRKKFSLKEN-YTLVMGDVLEVDLRRYLNQGT--KVVANIPYYITSPIINKIIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K+    G L++   +  +   +F I    F+P P 
Sbjct: 122 ---RDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEVEYLFTIPREFFYPIPN 177

Query: 201 VTSTV--IHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252
           V S    I F           E L  K  + AF  +RK +  +L  LG      + +L+Q
Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEILNQ 237

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
             +  N RAEN+SI+ F  + NI 
Sbjct: 238 IEVSENERAENISIDKFIELINIF 261


>gi|225453766|ref|XP_002270274.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089082|emb|CBI38785.3| unnamed protein product [Vitis vinifera]
          Length = 335

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 138/275 (50%), Gaps = 24/275 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQ+++L+ +I +++A+++   DG  ++EIG G G+LT +LL  GA  V+ IEKD 
Sbjct: 63  PRKSLGQHYMLNSSINEQLADTADIRDGDVILEIGPGTGSLTNVLLDAGA-TVLAIEKDA 121

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFE-KFFNI----------SSPIRIIANLPYNI 129
               ++++  +   +RL+++Q+D +K       F++          S   ++++N+P+NI
Sbjct: 122 HMAALVRERFAV-TDRLKVLQEDFMKCHIHPHLFSLLESKKAKNKESRYAKVVSNIPFNI 180

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMF 188
            T ++   +        +  + LL Q E   R + A   +  Y  +++   + +     F
Sbjct: 181 STDVVKILLPMGD---IFSEVVLLLQDETALRLVEASLRTQEYRPINIFVNFYSDPEYKF 237

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            +    FFP P V + V+ F        P    ++S   +   AF  +RK LR+SL+ + 
Sbjct: 238 KVPRTNFFPQPNVDAAVVVFKLKQAVDYPPVSSIKSFFSLVNSAFNGKRKMLRRSLQHIC 297

Query: 246 G----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                E  L   G+    R E L+++DF R+ N++
Sbjct: 298 TSIEIEEALRNVGLPATSRPEELTLDDFVRLHNLI 332


>gi|34762816|ref|ZP_00143802.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887518|gb|EAA24602.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 264

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 131/266 (49%), Gaps = 21/266 (7%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL +I E S   +   ++EIG G G LT +L+    +KV  +E D+
Sbjct: 6   KKKYGQNFLNNKDEILNRIIEVSNINENDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   S   N + +I  D L+VD  K+ N S+  +++AN+PY I + ++   I  
Sbjct: 65  DLENTLRKKFSSKENYI-LIMGDILEVDLRKYINKST--KVVANIPYYITSPIINKIIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K+    G L++   +  +A  +F I    F P+P 
Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEAEYLFTIPREFFNPTPN 177

Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250
           V S  I         + N I   L    K  + AF  +RK +  +L  LG      + +L
Sbjct: 178 VDSAFISIKFYKDDRYKNKISESL--FFKYVKAAFSNKRKNIVNNLVTLGYSKNKIKEIL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           +Q  +  N RAEN+SI+ F  + NI 
Sbjct: 236 NQIEVPENERAENISIDKFIELINIF 261


>gi|260906056|ref|ZP_05914378.1| dimethyladenosine transferase [Brevibacterium linens BL2]
          Length = 302

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 27/283 (9%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   + P K  GQNF++D N ++ I  S+      +V+EIG G G+LT  LL
Sbjct: 6   ARDIREIAADIGLRPTKQKGQNFVIDPNTVRSIVASAKLQGHSSVVEIGPGLGSLTLGLL 65

Query: 67  TLGARKVIVIEKDQ---QFFPIL------KDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
             G   V  +E D+   Q  P         D +++     E++  DAL+V        ++
Sbjct: 66  EAG-HDVTAVEIDEVLAQRLPATVKKYGHTDDAAEGAANFELVNADALRVTELP----TA 120

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P  ++ANLPYN+   +L +++  + +P   +S+ ++ Q EV ER+ A   S  YG  SV 
Sbjct: 121 PEALVANLPYNVAVPVLLHFL--EIFPSL-KSVLVMVQLEVAERLAAGPGSRTYGVPSVK 177

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRR 234
             W    T+   I  +VF+P+P + S ++H    +      L+  ++   +   AF +RR
Sbjct: 178 AQWYGDVTLAGRIGKNVFWPAPNIDSGLVHI--DVTRTQRDLQQRRRLFSVVDAAFAQRR 235

Query: 235 KTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272
           KTLR +L    G     E  L  AGI+   R E L + DF R+
Sbjct: 236 KTLRAALATWAGSPQQAEECLRAAGIDPKTRGEALGVADFERL 278


>gi|159900605|ref|YP_001546852.1| dimethyladenosine transferase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893644|gb|ABX06724.1| dimethyladenosine transferase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 288

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 138/285 (48%), Gaps = 29/285 (10%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++  L+   + P K MGQNFL+D   LK   E +       V+E+G G G LT  LL   
Sbjct: 10  VRGALNSIGVRPSKSMGQNFLIDPTPLKLALEHAEVNPNDVVVEVGPGLGVLTWELLN-A 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-----SPIRIIAN 124
           A  VI IE D +    L+   ++ P  L I++ D L++        +     +  +++AN
Sbjct: 69  AGHVISIELDPRLAGRLRTEFAERP--LTIVESDVLEIAPSAMLAAAGLPADTSYKLVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT---GWR 181
           +PY I + LL +++  D+ P     + +L Q EV +RITA+      G LS+L       
Sbjct: 127 IPYAITSPLLRHFLEGDSPPSL---MMVLMQWEVADRITAKP-----GDLSILAHSVQLY 178

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQS 240
             A ++  +    F P+P V S ++       N +P   ++L K+ +  F + RK L  S
Sbjct: 179 ATAEIIARVPAASFLPAPAVDSALVLMRRRATNAVPTAPKALFKVIRAGFSQARKKLINS 238

Query: 241 L------KRLGGENLLH---QAGIETNLRAENLSIEDFCRITNIL 276
           L      +  G E +L    QA I+ NLRAE L++E + R+T  L
Sbjct: 239 LAGGLAGQGFGKEQVLAAIVQAEIDPNLRAEVLTLEQWARLTETL 283


>gi|257463687|ref|ZP_05628077.1| dimethyladenosine transferase [Fusobacterium sp. D12]
 gi|317061234|ref|ZP_07925719.1| dimethyladenosine transferase [Fusobacterium sp. D12]
 gi|313686910|gb|EFS23745.1| dimethyladenosine transferase [Fusobacterium sp. D12]
          Length = 268

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 133/270 (49%), Gaps = 29/270 (10%)

Query: 22  KKYMGQNFLL-DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL     IL +I E S       ++EIG G G LT++LL   A+ V+ IE D+
Sbjct: 6   KKKYGQNFLTKQAEILARILEVSEVQKQDNILEIGPGEGALTELLLQ-EAKSVVNIEIDE 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              PIL+     + N   +I  D L+VDF K+  +    +++AN+PY I + ++   I  
Sbjct: 65  DLKPILEKKFGNNEN-YRLIMGDVLEVDFSKY--MEEGTKVVANIPYYITSPIIQKIIEH 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
            +  P   +  L+ QKEVGERI A++       L++   +  +A  +F I    F P PK
Sbjct: 122 RSLIP---AAFLMVQKEVGERICAKRGRERSA-LTLSVEYFARAEYLFTIPKEYFTPVPK 177

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKTLRQSLKRLG------G 246
           V S  I    H+       E  K+I +E F K        +RK L  +   LG       
Sbjct: 178 VDSAFIGI--HMKERE---EIAKQIPEELFFKYVKAGFWNKRKNLVNNFSSLGFSKTEIK 232

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E+L+ + GI  N RAENLS++++  +   L
Sbjct: 233 ESLI-KLGIAENERAENLSLQEWFSVIETL 261


>gi|163841724|ref|YP_001626129.1| dimethyladenosine transferase [Renibacterium salmoninarum ATCC
           33209]
 gi|162955200|gb|ABY24715.1| dimethyladenosine transferase [Renibacterium salmoninarum ATCC
           33209]
          Length = 297

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 24/281 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ + +   + P K +GQNF++D N +++I  ++      TV+EIG G G+LT  LL
Sbjct: 21  AADIRRLAAELDVRPTKTLGQNFVIDGNTIRRIVAAAKIAPSETVLEIGPGLGSLTLGLL 80

Query: 67  TLGARKVIVIEKDQQFFPIL-KDISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRII 122
              A  V+ +E D +    L + IS   P +    +++  DALKV          P  ++
Sbjct: 81  DAAAH-VVAVEIDAKLAARLPQTISEFRPEKSGAFDVVTADALKVTELP----QEPTALV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTG 179
           ANLPYN+   ++ + +       ++ SL    ++ Q EV +R+ A   S  YG  SV   
Sbjct: 136 ANLPYNVAVPVVLHLLE------YFLSLEHGLVMVQDEVADRLAAPPGSKTYGVPSVKAA 189

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLR 238
           W  +      I  +VF+P+PK++S ++ FI    P        +  +   AF +RRKT+R
Sbjct: 190 WYAQVRKAGVIGMNVFWPAPKISSGLVEFIRREPPQTRAERREVFAVIDAAFAQRRKTVR 249

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
            +L    G     E +L  AG++   R E L I  F RI  
Sbjct: 250 AALAGWAGSGADAEQILIAAGVDPRARGEVLDIAAFSRIAE 290


>gi|294338548|emb|CAZ86877.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Thiomonas sp.
           3As]
          Length = 268

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 130/263 (49%), Gaps = 21/263 (7%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV-IEK 78
           + +K  GQ+FL+D  I++ I +         ++EIG G G LT  LL    R   V I++
Sbjct: 17  VARKRFGQHFLIDQQIIQGIVDCINPQADERLVEIGPGLGALTLALLQRIPRLAAVEIDR 76

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     +    S Q P+++E+I+ DAL  DF  F ++ + +R++ NLPYNI T LLF+ +
Sbjct: 77  D-----LAARWSKQAPDKVELIEADAL--DF-NFASLGTDLRLVGNLPYNISTPLLFHLM 128

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                         + QKEV +R+ A      +GRLSV+  WR +   + D+ P  F P 
Sbjct: 129 DVAEQ---VRDQHFMLQKEVIDRMVAAPGGRDFGRLSVMLQWRYRMVNLLDVPPEAFDPP 185

Query: 199 PKVTSTVIHFIP-HLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--AG 254
           PKV S V+   P  +  +P      L  +   AF +RRK +R SL    G  L  Q  AG
Sbjct: 186 PKVNSAVVRMTPLPVQELPRLDRKLLSALVTAAFSQRRKLMRHSL----GPWLDTQGYAG 241

Query: 255 -IETNLRAENLSIEDFCRITNIL 276
             +   RAE +S  ++  +   L
Sbjct: 242 DFDLQRRAEEVSTAEYIALAQSL 264


>gi|291556434|emb|CBL33551.1| dimethyladenosine transferase [Eubacterium siraeum V10Sc8a]
          Length = 287

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 131/269 (48%), Gaps = 20/269 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL++  +  KIAE  G+   +  IEIG G G LT+ L      KV+ IE D   
Sbjct: 22  KSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGVLTRELAK-RCEKVVAIEIDTGL 80

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPYNIGTRLLFNWIS 139
            PIL +   ++ N +E+I  D ++ D  K      P   + + ANLPY I + ++   + 
Sbjct: 81  KPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDMDVIVCANLPYYITSPVIMKLLE 139

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +  P   +++T++ Q E  +RI A   S   G ++    +  K   +F ++   F P+P
Sbjct: 140 -EKLP--IKAITVMVQLEAADRICAAVGSRECGAITASINYYAKPKKLFRVNRGSFMPAP 196

Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL-------KRLGGENL 249
            V S VI    +  P P  +++     ++ ++AF +RRK L   +       K +  E  
Sbjct: 197 NVDSAVISLERYEQP-PYKVDNEPLFFEVIKQAFAQRRKQLANPVSAYFKIPKAVLAEK- 254

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278
           + + GI    RAE L++ +  ++  I+ +
Sbjct: 255 MTEGGIPATARAEQLTMAELVKLYEIIDE 283


>gi|27151613|sp|Q9RED9|RSMA_BURSP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|6687038|emb|CAB64788.1| KsgA, high level kasugamycin resistance protein [Burkholderia sp.]
          Length = 277

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 11/263 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKD 79
           +K  GQ+FL+D  ++  I  +        ++EIG G G LT  LL    GA ++  IE D
Sbjct: 14  RKRFGQHFLIDSAVIDAIVSAIAPAPQDCLVEIGPGLGALTWPLLERLGGAGRLHAIEMD 73

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138
           +     L+ +       L +   DAL+ DF +      + +RI+ NLPYNI + LLF+ +
Sbjct: 74  RDLAAHLQRLGH---ASLILHAGDALRFDFAQLARAEQARLRIVGNLPYNISSPLLFHLL 130

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             D      +    + Q+EV  RI A   S HYGRLSV+   R     +FD+ P  F P 
Sbjct: 131 --DEMNEVVDQ-HFMLQREVAARIAAAPGSAHYGRLSVMLQSRYAVERLFDVPPCAFAPP 187

Query: 199 PKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P V S V+   PH +     L+      + + AF +RRK LR +L            G +
Sbjct: 188 PAVHSAVLRMAPHASRALPQLDWARFAALVRAAFSQRRKILRHTLSVYQKTPDFDALGFD 247

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RA+ + + ++ ++   +  N
Sbjct: 248 HGRRAQEVPVGEYLKLAQHIEQN 270


>gi|213966088|ref|ZP_03394276.1| dimethyladenosine transferase [Corynebacterium amycolatum SK46]
 gi|213951286|gb|EEB62680.1| dimethyladenosine transferase [Corynebacterium amycolatum SK46]
          Length = 301

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 134/292 (45%), Gaps = 32/292 (10%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   I+P K +GQNF+ D N +++I  ++   +    +E+G G G+LT  LL   
Sbjct: 14  VRDLAAQLDIVPTKKLGQNFVHDANTVRRIVAAADLPEDSYPVEVGPGLGSLTLGLLEHC 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            R   V E D +    L    ++      LE+I+ DALKV  E F   ++P  ++ANLPY
Sbjct: 74  GRAAAV-EIDHRLAARLPQTVTERAEGCALELIEKDALKVSREDFQ--TAPDALVANLPY 130

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+   +L + ++     P    + ++ Q EV +R+ AQ  S  YG  SV   +       
Sbjct: 131 NVSVPVLLHMLAEL---PTIRRVLVMVQSEVADRLAAQPGSKIYGVPSVKAAYYGTVRRA 187

Query: 188 FDISPHVFFPSPKVTSTVIHF----------------IPHLNP---IPCCLESLKKITQE 228
             I PHVF+P PKV S ++                   P   P    P     L  +   
Sbjct: 188 GAIGPHVFWPVPKVDSGLVRIDCYARSDAPETSDVSGAPEAAPWEISPQFRARLFPLIDA 247

Query: 229 AFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNI 275
           AF +RRKTLR +L  + G        L  AGI+   R E L I DF R+  +
Sbjct: 248 AFAQRRKTLRAALSGIYGSGAAAEEALMAAGIDPRQRGEKLEIADFVRLAEV 299


>gi|290959782|ref|YP_003490964.1| SAM-binding methyltransferase [Streptomyces scabiei 87.22]
 gi|260649308|emb|CBG72423.1| putative SAM-binding methyltransferase [Streptomyces scabiei 87.22]
          Length = 316

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 16/275 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++      TV+E+G G G+LT  LL   
Sbjct: 14  VRELAAALGVRPTKQRGQNFVIDANTVRRIVRTADVRPQDTVVEVGPGLGSLTLALLETA 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            R   V   D     +   I+++ P   +R  ++  DA++V          P  ++ANLP
Sbjct: 74  DRVTAVEIDDVLAAALPATIAARMPARADRFALVHSDAMQV---TELPGPPPTALVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YN+   +L + +  +T+P    +L ++ Q EV +R+ A   S  YG  SV   W  +   
Sbjct: 131 YNVAVPVLLHML--ETFPSIERTL-VMVQAEVADRLAAGPGSKVYGVPSVKANWYAEVKR 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR-----Q 239
              I  +VF+P+P V S ++  +    P+       +   +   AF +RRKTLR      
Sbjct: 188 AGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTAATRREVFTVVDAAFAQRRKTLRAALAGW 247

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           +      E  L  AG+    R E+L +E+F  I  
Sbjct: 248 AGSAAAAEAALVAAGVSPQARGESLGVEEFAAIAE 282


>gi|58613497|gb|AAW79335.1| chloroplast dimethyladenosine synthase [Heterocapsa triquetra]
          Length = 395

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 136/270 (50%), Gaps = 25/270 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           PK+ + QNFL D N + K+  +    S  G  V+E+G G G LT  L      +++ ++ 
Sbjct: 112 PKQSLSQNFLADPNYVFKMVNAIEDDSPGGKQVLELGPGTGALTSRLHPRFP-EMMAVDL 170

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137
           DQ+   +L    +Q+     +I+ D L +++ K   +   P+ I+ NLPY++ +++LF  
Sbjct: 171 DQRAMRVL----AQNVPGCTVIRSDVLLINYTKLAEVRGGPLTIVGNLPYHVTSQILFTL 226

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
             AD      ++  +  QKEV ERI A+ N+  YG LSV         ++FDI P+ FFP
Sbjct: 227 --ADHAKSVKDA-HVTMQKEVAERIVARPNTKKYGILSVCFQLYADPKILFDIPPNAFFP 283

Query: 198 SPKVTSTVI--HFIP------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE 247
            P V S+ +  +F         LN  P    +L+ +T  AF  RRK L+ SLK L     
Sbjct: 284 RPNVMSSYVKLNFADAEERRLALNVDP---RNLRNVTTRAFRMRRKMLQNSLKNLLDCXX 340

Query: 248 NLLHQAGIE-TNLRAENLSIEDFCRITNIL 276
            L+++   E   LR E +   +F  +T +L
Sbjct: 341 TLINELPEEYAKLRPEQIEPWEFVHLTQLL 370


>gi|194476720|ref|YP_002048899.1| putative rRNA (adenine-N6,N6)- dimethyltransferase [Paulinella
           chromatophora]
 gi|171191727|gb|ACB42689.1| putative rRNA (adenine-N6,N6)- dimethyltransferase [Paulinella
           chromatophora]
          Length = 284

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 136/271 (50%), Gaps = 15/271 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           +K  GQ++L D +IL KI  ++  S D I V+EIG+G G LT+ LL   A   + +E D+
Sbjct: 9   RKDFGQHWLKDKSILNKIILAADLSADDI-VLEIGSGRGALTESLLASSALLTLAVELDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               +L+     H  R  +I+ D L+++F    +  +P +++AN+PYNI   LL   + +
Sbjct: 68  DLASMLRKRLGTH-TRFALIEGDILRINFPNA-STYTPNKVVANIPYNITGPLLKRLLGS 125

Query: 141 DTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              P    ++ + LL Q+EVG+RI A      Y  LSV      +   +  + PH F PS
Sbjct: 126 LNKPLNKPYKKIVLLVQQEVGDRIRANPGHTSYSALSVKMQLLARCYSVCIVPPHCFDPS 185

Query: 199 PKVTSTVIHFIPHLNP----IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250
           P V S VI   P LNP    +P     ++++ +  F  RRK LR SL  L      E ++
Sbjct: 186 PSVVSEVIVLEP-LNPDQHLMPELAIRVEELLKFCFSSRRKMLRNSLTNLVPIKFLEIVI 244

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            ++GI    R + L+   +  +   L+   D
Sbjct: 245 AKSGISLEQRPQELTPSQWVDLAASLSKFSD 275


>gi|157872123|ref|XP_001684610.1| ribosomal RNA adenine dimethylase family protein [Leishmania major
           strain Friedlin]
 gi|68127680|emb|CAJ05804.1| putative ribosomal RNA adenine dimethylase family protein
           [Leishmania major strain Friedlin]
          Length = 374

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 13/231 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S  +KT  S   I+  K  GQ+ L +  ++  I E +       VIEIG G GNLT+ LL
Sbjct: 57  SFGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
              A+KVI  E D +    L       P  ++L+II+ + L+ DF +F       + +AN
Sbjct: 117 QT-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPRF------DKCVAN 169

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV +    + 
Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235
           + +  IS + F P PKV S+VI   P   P     E    + +  F ++ K
Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKYPPPDVDFEEWDGLVKMLFSRKNK 276


>gi|33865586|ref|NP_897145.1| dimethyladenosine transferase [Synechococcus sp. WH 8102]
 gi|62900567|sp|Q7U7D3|RSMA_SYNPX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33632755|emb|CAE07567.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. WH 8102]
          Length = 302

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 15/235 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D  +L +I  ++       V+E+G G G LT+ LL+  A  V  +E D+ 
Sbjct: 9   RKRFGQHWLKDQTVLDRIVAAADLQPSDRVLEVGPGRGALTERLLSSPAAAVQAVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++  +  P R  + Q D L++  +    +++  +++AN+PYNI   LL   +   
Sbjct: 69  LVDGLRERFAGDP-RFSLRQGDVLELPLQLEDGVAA-SKVVANIPYNITGPLLDRLVGRL 126

Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             P  P ++ L LL QK+V ERI A+     +  LSV      + T +  + P  F P P
Sbjct: 127 DRPVEPPYQRLVLLVQKQVAERIRARPGHSSFSALSVRMQLLARCTTVCPVPPRCFQPPP 186

Query: 200 KVTSTVIHFIPHLNPIPC-------CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           KV S VI     ++P+P            ++ + ++AF  RRK LR +L  L  E
Sbjct: 187 KVQSEVI----QIDPLPADKRLPSDIARRVESLLRQAFLARRKMLRNTLASLAPE 237


>gi|229009551|ref|ZP_04166778.1| Dimethyladenosine transferase [Bacillus mycoides DSM 2048]
 gi|229053888|ref|ZP_04195323.1| Dimethyladenosine transferase [Bacillus cereus AH603]
 gi|229131049|ref|ZP_04259962.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST196]
 gi|229165030|ref|ZP_04292826.1| Dimethyladenosine transferase [Bacillus cereus AH621]
 gi|228618415|gb|EEK75444.1| Dimethyladenosine transferase [Bacillus cereus AH621]
 gi|228652386|gb|EEL08310.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST196]
 gi|228721429|gb|EEL72949.1| Dimethyladenosine transferase [Bacillus cereus AH603]
 gi|228751695|gb|EEM01494.1| Dimethyladenosine transferase [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 19/222 (8%)

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A+KV+  E DQ+  PIL +  + + N + +I  D LK D    F + F     + ++ANL
Sbjct: 5   AKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANL 63

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+  
Sbjct: 64  PYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVE 120

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR 243
            +  +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L  
Sbjct: 121 TVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSN 180

Query: 244 LGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                       + +L + GI+   R E LSIE+F  ++N L
Sbjct: 181 NLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 222


>gi|254416619|ref|ZP_05030370.1| dimethyladenosine transferase [Microcoleus chthonoplastes PCC 7420]
 gi|196176585|gb|EDX71598.1| dimethyladenosine transferase [Microcoleus chthonoplastes PCC 7420]
          Length = 283

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 13/267 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K   Q++L     L +I  ++       ++EIG G G LT+ LL      ++ +E D+  
Sbjct: 7   KQFAQHWLRSEKALNQIITAAKLQPRDRLLEIGPGTGVLTRRLLG-EVESLVAVEIDRDL 65

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLFNWI 138
              L     Q+ N L ++Q D L ++  +    F +  SP +++AN+PYNI   +L   +
Sbjct: 66  CQRLVKSLGQNENFL-LLQGDILSLNLAEHLAAFPHFQSPNKVVANIPYNITGPILQTLL 124

Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                P  P +E + LL QKEV +R+ A+  S  +G LSV   +      + D+    F 
Sbjct: 125 GTIAQPITPAFELIVLLVQKEVAQRLCAKPGSKAFGALSVRVQYLADCDWICDVPAIAFS 184

Query: 197 PSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLH 251
           P PKV S V+   P + +P     + L+ + +  F  +RK LR +LK L   +    LL 
Sbjct: 185 PPPKVDSAVVRLRPRIVDPSADNPQQLETLVKLGFASKRKMLRNNLKSLCDRDKINQLLE 244

Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278
           Q       RAE+LS+  +  + N L +
Sbjct: 245 QVDSHPQARAEDLSVSQWVALANRLNE 271


>gi|184201384|ref|YP_001855591.1| dimethyladenosine transferase [Kocuria rhizophila DC2201]
 gi|183581614|dbj|BAG30085.1| dimethyladenosine transferase [Kocuria rhizophila DC2201]
          Length = 396

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 36/285 (12%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     I P K +GQNF++D N +++I  ++       V+E+G G      + L   
Sbjct: 16  IRELAETAGIRPTKTLGQNFVIDPNTIRRIVAAAHLAPEEHVLEVGPG-LGSLTLGLLAA 74

Query: 70  ARKVIVIEKD-----------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118
           +  V  +E D            +FFP   D +     RL +++ DA +V   +    + P
Sbjct: 75  SSAVTAVEIDPPLARQLPETVARFFP---DAAP----RLSVVEADAARV--RELPGGAEP 125

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
             ++ANLPYN+   +L + +  +T+P     L ++ Q EV +R+ A   S  YG  SV  
Sbjct: 126 TALVANLPYNVAVPVLLHIL--ETFPSIRHGL-VMVQDEVADRLAAGPGSRVYGVPSVKA 182

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK----KITQEAFGKRR 234
            W  +      I  +VF+P+PK+ S ++         P   E L+     +   AF +RR
Sbjct: 183 SWYAEVRKAGVIGKNVFWPAPKIASGLVRLERRE---PPAEERLRVPTFAVVDAAFAQRR 239

Query: 235 KTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           KTLR +L    G     E +L  AG++   R E L + DF RI  
Sbjct: 240 KTLRAALSGWAGSGARAEEILRAAGVDPAERGEKLGVADFARIAE 284


>gi|237744029|ref|ZP_04574510.1| dimethyladenosine transferase [Fusobacterium sp. 7_1]
 gi|229431258|gb|EEO41470.1| dimethyladenosine transferase [Fusobacterium sp. 7_1]
          Length = 264

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 17/264 (6%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +KV  +E D+
Sbjct: 6   KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               IL+   S   N   ++  D L+VD  ++ N  +  +++AN+PY I + ++   I  
Sbjct: 65  DLENILRKKFSLKEN-YTLVMGDVLEVDLRRYLNQGT--KVVANIPYYITSPIINKIIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K+    G L++   +  +A  +F I    F P P 
Sbjct: 122 ---RDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEAEYLFTIPREFFNPIPN 177

Query: 201 VTSTV--IHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252
           V S    I F           E L  K  + AF  +RK +  +L  LG      + +L+Q
Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEILNQ 237

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
             +  N RAEN+SI+ F  + NI 
Sbjct: 238 IEVSENERAENISIDKFIELINIF 261


>gi|300711086|ref|YP_003736900.1| dimethyladenosine transferase [Halalkalicoccus jeotgali B3]
 gi|299124769|gb|ADJ15108.1| dimethyladenosine transferase [Halalkalicoccus jeotgali B3]
          Length = 277

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 23/235 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           Q+FL+D  +L ++   + ++D     V+EIGAGPG LT  L  + A +V  +E+D     
Sbjct: 21  QHFLIDDRVLDRLPTYATAIDADLSHVLEIGAGPGALTDRLCRV-ADRVTAVERDPDLVS 79

Query: 85  ILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+   +       L +++ DAL V   +F         ++NLPY + +++ F       
Sbjct: 80  FLRREFADEIADGTLSVVEGDALDVSLPEF------TACLSNLPYGVSSQIAFRLF---- 129

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             P    L L+FQ+E  ER+ A+ N+P YGRLSV         ++  +    F P P V 
Sbjct: 130 --PRKRPLVLMFQREFAERMVAEPNTPEYGRLSVSAQHYADPEIVETVPKEAFSPPPAVE 187

Query: 203 STVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           S ++   P         E+   +  +  F +RRKTLR +++  G     H +G+E
Sbjct: 188 SALVRARPRDPEYTVSDEAFFLRFVKALFTQRRKTLRNAIRNTG-----HISGLE 237


>gi|225714284|gb|ACO12988.1| Probable dimethyladenosine transferase [Lepeophtheirus salmonis]
          Length = 312

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 12/215 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  ++  I E SG     TV+EIG G GNLT  LL    ++VIV E D +   
Sbjct: 33  LGQHILKNPAVVDSIVEESGLRSTDTVLEIGPGTGNLTAKLLE-KVKRVIVCEVDPRMVA 91

Query: 85  ILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+     S + ++L+II  DA+K D   FF++      +AN+PY I + L+F  +    
Sbjct: 92  ELQKHFQHSSYKSKLDIIVGDAIKTDLP-FFDVC-----VANVPYQISSPLVFKLL---L 142

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E  +R+ A      Y RLS+ T   +    +  +  + F P PKV 
Sbjct: 143 HRPFFRVAVLMFQREFAQRLIAPPGDKLYCRLSINTQLLSTVHHLLKVGKNNFRPPPKVE 202

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           S+V+   P   P P   +    +T+  F ++ KTL
Sbjct: 203 SSVVRIEPKNPPPPINFKEWDGLTRICFVRKNKTL 237


>gi|312879958|ref|ZP_07739758.1| dimethyladenosine transferase [Aminomonas paucivorans DSM 12260]
 gi|310783249|gb|EFQ23647.1| dimethyladenosine transferase [Aminomonas paucivorans DSM 12260]
          Length = 287

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 8/259 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +  +GQNFL+D  +++ +  ++       V+E+G G G LT+ LL    RKV  +E D++
Sbjct: 10  RTEIGQNFLVDPKVVRDLVAAAAPDPDTVVLEVGPGKGILTEALLGSPCRKVFSLEIDRR 69

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P L+ + +++  +  ++  DAL+V F+       P  + ANLPY+I T L++ ++   
Sbjct: 70  LEPFLEPLFARYAPKGTLLWGDALRVTFQDLLP-EIPHLVAANLPYHITTPLIWKFLEEL 128

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           T P    +L L+ Q+E   R+ AQ+ S     L +          +  +SP  F P P+V
Sbjct: 129 T-PRGTRTLVLMVQREAAWRLMAQEGSRDRTPLGITLQRMGTLRKVRAVSPGAFRPIPQV 187

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS------LKRLGGENLLHQAGI 255
            ST++       P      S +   + +F +RRKTL  +      L R   E  L    +
Sbjct: 188 ASTILEIRIQREPDLANDPSWRAFVRGSFAQRRKTLVNNWIAGWRLPREEAEGRLAPLAL 247

Query: 256 ETNLRAENLSIEDFCRITN 274
               R E L++  + R+  
Sbjct: 248 PRTARPEELTLPQWIRLAQ 266


>gi|254422682|ref|ZP_05036400.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335]
 gi|196190171|gb|EDX85135.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335]
          Length = 302

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 135/270 (50%), Gaps = 19/270 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L    +L +I  +    +G  V+EIG G G LTQ LL   A KV+ +E D+ 
Sbjct: 30  RKRFGQHWLCSDQVLNQIVRAGELAEGDLVLEIGPGQGVLTQRLLDTSA-KVLAVEIDRD 88

Query: 82  FFPILKD--ISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNIGTRLLFN 136
               L D  I+     +  +I+ D L+++F++    F +  P +++AN+PY I   +L  
Sbjct: 89  LCLQLSDQFIADMASGQFRLIESDFLELNFDQALLDFELDRPNKVVANIPYYITAPILEK 148

Query: 137 WISADTWP-PF-WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            +     P PF + ++ LL QKE+ +R+ AQ  +   G L++   +  +   +  + P  
Sbjct: 149 LLGTMRSPNPFPFSNIVLLVQKEISDRLCAQPGTRANGALTIRVQYLAECEEICLVPPSA 208

Query: 195 FFPSPKVTSTVIHFIPH--LNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-- 248
           F P+PKV S V+   P   L P   P  L  L K+    F ++RK LR +L+ +   +  
Sbjct: 209 FKPTPKVDSAVVRLRPRPFLTPAEDPIFLSQLVKL---GFSQKRKMLRNNLQSIVDRDTL 265

Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNIL 276
             LL    +    RAE L + ++  ++N +
Sbjct: 266 SALLESLSLNPQTRAEGLGVGEWVALSNAV 295


>gi|237742501|ref|ZP_04572982.1| dimethyladenosine transferase [Fusobacterium sp. 4_1_13]
 gi|229430149|gb|EEO40361.1| dimethyladenosine transferase [Fusobacterium sp. 4_1_13]
          Length = 264

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 128/266 (48%), Gaps = 21/266 (7%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + N IL KI E S   D   ++EIG G G LT +L+    +KV  +E D+
Sbjct: 6   KKKYGQNFLNNKNEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   S   N   ++  D L+VD  K+ N  +  +++AN+PY I + ++   I  
Sbjct: 65  DLENTLRKKFSPKEN-YTLVMGDVLEVDLRKYINQGT--KVVANIPYYITSPIINKIIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K+    G L++   +  ++  +F I    F P P 
Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGESEYLFTIPREFFNPIPN 177

Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250
           V S  I         + N I   L    K  + AF  +RK +  +L  LG      + +L
Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           +Q  +  N RAEN+SI+ F  + NI 
Sbjct: 236 NQIEVSENERAENISIDKFIELINIF 261


>gi|119953374|ref|YP_945583.1| dimethyladenosine transferase [Borrelia turicatae 91E135]
 gi|119862145|gb|AAX17913.1| dimethyladenosine transferase [Borrelia turicatae 91E135]
          Length = 278

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 145/284 (51%), Gaps = 14/284 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N  +S+K+ L+   I P+K  GQN+L++ +I +KI ++    +   + EIG G G
Sbjct: 1   MNINYNSINSIKSALASKNIAPRKIWGQNYLINEHIREKIVDTLEIKENENIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL      + V E D ++  IL +   Q  N  ++I+ D LK   ++  NI+   
Sbjct: 61  AMTIILLK-KTNFLTVFEIDPKYSEILNEQFGQFKN-FKLIKGDFLKTYKQERQNIN--- 115

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI +++    IS          +    QKE+ +R+ A++ + +Y   +VL  
Sbjct: 116 KIFSNLPYNIASKV----ISMLIEDGILTHMVFTVQKELADRMLAKEGNKNYSSFTVLVQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI    F+P PKV ST +  IP    I    ++  K+ +  F  RRK L+ 
Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTLKLIPCKRVIK-DFKAFNKLVRTVFISRRKKLKN 230

Query: 240 SLKRLGGE-NLLHQAGIETNL--RAENLSIEDFCRITNILTDNQ 280
           ++     + ++L +  ++  L  R E +S+++F  I+N LT N 
Sbjct: 231 TIINFTKDGSILEEDFLKRFLDKRPEEISVKEFITISNKLTTNH 274


>gi|312194501|ref|YP_004014562.1| ribosomal RNA adenine methylase transferase [Frankia sp. EuI1c]
 gi|311225837|gb|ADP78692.1| ribosomal RNA adenine methylase transferase [Frankia sp. EuI1c]
          Length = 342

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 125/295 (42%), Gaps = 47/295 (15%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P K  GQNFL+D N ++++   +G      V+E+G G G+LT  LL   AR+V+ +E D 
Sbjct: 38  PTKRRGQNFLVDPNTVRRLVRLAGIGPDDVVLEVGPGIGSLTLGLLG-AARRVLAVEVDP 96

Query: 81  QFFPILKD-----ISSQHPNRLEIIQDDALKV-------DFEKFFNISSPIR-------- 120
                L       +      RL ++  DAL++       + ++    + P          
Sbjct: 97  ALAAALPATAAARLDPATAGRLTVLTRDALRLVPADLPGEPDQPIGAAGPASASGVAGPA 156

Query: 121 -----------------IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
                            + ANLPYNI   LL   +  + +P     L ++ Q EV +R+T
Sbjct: 157 SGAGAGSPGGAAGAPTVLAANLPYNIAVPLLLGLL--ERFPSLERGL-VMVQAEVADRLT 213

Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-L 222
           +      YG  SV   W   +     +   VF+P P V S ++ F     P P  L + +
Sbjct: 214 SPPGGRVYGVPSVKLAWYAGSRSAGAVPRSVFWPVPNVDSGLVAFTRRPAPAPSELRADV 273

Query: 223 KKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272
                 AF +RRKTLR +L    G     + L   AG++   R E L I  +CR+
Sbjct: 274 FAAIDAAFAQRRKTLRTALAGWAGSPAAVDRLTRAAGVDPGARGETLDIAAYCRL 328


>gi|224001108|ref|XP_002290226.1| dimethyladenosine transferase [Thalassiosira pseudonana CCMP1335]
 gi|220973648|gb|EED91978.1| dimethyladenosine transferase [Thalassiosira pseudonana CCMP1335]
          Length = 335

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 133/277 (48%), Gaps = 23/277 (8%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           N  + SLK+  ++  I P   +GQ+FL +  ++  I   +G     +++EIG G GN+T 
Sbjct: 35  NEGAASLKSAGTNL-IAPNTSLGQHFLKNPAVVTAIVAKAGLKPTDSILEIGPGTGNMTV 93

Query: 64  MLLTLGARKVIVIEKDQQFF-PILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRI 121
            LL   ++ V+ IE D +    +LK +      R L++IQ DA+K  F  FF++      
Sbjct: 94  PLLQ-QSKSVVAIEYDTRMVREVLKRVEGTSEERKLKVIQGDAIKTRFP-FFDVC----- 146

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +AN+PY I + L+F  +S     P +    ++FQ+E   R+TA+     Y RLSV T   
Sbjct: 147 VANVPYQISSALVFKLLSHR---PMFRCAVMMFQEEFALRLTARPGEALYCRLSVNTQLL 203

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            K   +  +  + F P PKV S V+       P P        + +  F ++ KTLR  L
Sbjct: 204 AKVDQLMKVGRNNFRPPPKVESRVVRIELRNPPPPVNFTEWDGMIRLLFNRKNKTLRSVL 263

Query: 242 K-----RLGGENL-----LHQAGIETNLRAENLSIED 268
                 ++  EN+     L+ A + T  +  +  IED
Sbjct: 264 MTKPTIKMLDENMRTQRALNGASMNTENKTADQIIED 300


>gi|319950588|ref|ZP_08024496.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Dietzia cinnamea P4]
 gi|319435727|gb|EFV90939.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Dietzia cinnamea P4]
          Length = 244

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N ++KI  +SG     TVIE+G G G+LT  LL   
Sbjct: 1   MRALAAELGVTPTKTLGQNFVHDANTVRKIVTASGVGRDDTVIEVGPGLGSLTLPLLDAA 60

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLE----IIQDDALKVDFEKFFNISSPIRIIANL 125
            R V+ +E D      L    ++   RL     ++  DAL V         SP  ++ANL
Sbjct: 61  GR-VVAVEIDPVLAARLPRTVAERAPRLAELLTVVGADALAVSAADLGE-PSPTALVANL 118

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + ++     P   +  ++ Q EV +R+ A   S  YG  SV  G+     
Sbjct: 119 PYNVSVPVLLHLLAEV---PTIRTALVMVQLEVADRLAAAPGSRVYGVPSVKAGFFGTVR 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKK---ITQEAFGKRRKTLRQSL 241
               +  +VF+P P V S ++    +   P     E  ++   +   AF +RRKTLR +L
Sbjct: 176 RTGVVGRNVFWPVPNVESGLVRIDAYPEAPWDLGAEHRRRVFAVVDAAFAQRRKTLRAAL 235

Query: 242 KRLGGEN 248
               G  
Sbjct: 236 SGWAGSG 242


>gi|255541450|ref|XP_002511789.1| dimethyladenosine transferase, putative [Ricinus communis]
 gi|223548969|gb|EEF50458.1| dimethyladenosine transferase, putative [Ricinus communis]
          Length = 338

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 135/277 (48%), Gaps = 26/277 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQ+++L+  + +++  ++   +G  V+EIG G G+LT +LL  GA  V+ IEKD 
Sbjct: 66  PRKSLGQHYMLNSEVNEQLVCAANVEEGDLVLEIGPGTGSLTNLLLDTGA-TVLAIEKDA 124

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----------SPIR--IIANLPYN 128
               I+++  S H +R +++Q+D +K    +F  +S           P R  ++AN+P+N
Sbjct: 125 HMAAIVRERFS-HTDRFKLLQEDFVKCHI-RFHMLSLLENMTSLNEKPRRAKVVANIPFN 182

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMM 187
           I T ++   +           + LL Q+E   R+      +  Y  ++V   + +     
Sbjct: 183 ISTDVVKQLLPMGD---IISEVALLLQEETASRLVESSLRTSEYRPINVFVNFYSDPVYK 239

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           F +    FFP P V + V+ F        P     +S   +   AF  +RK LR+SL+ +
Sbjct: 240 FKVPRSNFFPQPNVDAAVVTFKLKQTADYPAVSSSKSFFSLVNSAFNGKRKMLRRSLQHI 299

Query: 245 GGENLLHQA----GIETNLRAENLSIEDFCRITNILT 277
                + QA    G+    R E L+++DF ++ N++ 
Sbjct: 300 CTSPEIEQALINVGLPATSRPEELTLDDFVKLHNLIA 336


>gi|91790683|ref|YP_551635.1| dimethyladenosine transferase [Polaromonas sp. JS666]
 gi|118600882|sp|Q121Q5|RSMA_POLSJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91699908|gb|ABE46737.1| dimethyladenosine transferase [Polaromonas sp. JS666]
          Length = 330

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 131/317 (41%), Gaps = 72/317 (22%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVI 76
           K IP+K  GQ+FL D  I++ I ++     G  V+EIG G   LTQ L+  LG   VI +
Sbjct: 19  KHIPRKRFGQHFLTDQGIIEGIVQAIAPRAGQAVVEIGPGLAALTQPLVERLGHLTVIEL 78

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPY------- 127
           ++D      L      HP  L +++ D LKVDF +        P+R  A LP        
Sbjct: 79  DRD------LAQQLRAHPQ-LTVVESDVLKVDFRQLAERLQHGPVR-SAGLPQAETAPKG 130

Query: 128 --------NIGTRLLFNWISADTWP-----------------------PFWESLTLLF-- 154
                     G R      +    P                       P+  S  +LF  
Sbjct: 131 LEPAGSSSQQGPRDWLRQTAGAAAPSRGSAVHEVTSVGAHKLRVVGNLPYNISTPILFHL 190

Query: 155 --------------QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                         QKEV +R+ A  ++  YGRLSV+  WR     +  + P  F P P+
Sbjct: 191 LDAVDVIEDQHFMLQKEVIDRMVAAPSTSDYGRLSVMLQWRYAMENVLFVPPQSFDPPPR 250

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---AGIET 257
           V S V+  +PH +P    ++ L ++ Q AF +RRK LR +L    G+ L  +      + 
Sbjct: 251 VDSAVVRMVPHAHPAALDVKLLSQLVQVAFSQRRKLLRHTL----GQWLTARGFPGAFDV 306

Query: 258 NLRAENLSIEDFCRITN 274
             RAE + + ++  +  
Sbjct: 307 QRRAEEVPVAEYVALAQ 323


>gi|153823926|ref|ZP_01976593.1| dimethyladenosine transferase [Vibrio cholerae B33]
 gi|126518553|gb|EAZ75776.1| dimethyladenosine transferase [Vibrio cholerae B33]
          Length = 209

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 11/193 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  VIE D+ 
Sbjct: 12  RKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPV-GREVDKFTVIELDRD 70

Query: 82  FFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               L++    HP   ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F+  
Sbjct: 71  LAERLRN----HPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLF 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F P 
Sbjct: 127 EFHRD---IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPP 183

Query: 199 PKVTSTVIHFIPH 211
           PKV S V+  +P+
Sbjct: 184 PKVDSAVVRLVPY 196


>gi|260434330|ref|ZP_05788300.1| dimethyladenosine transferase [Synechococcus sp. WH 8109]
 gi|260412204|gb|EEX05500.1| dimethyladenosine transferase [Synechococcus sp. WH 8109]
          Length = 274

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 120/253 (47%), Gaps = 11/253 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D ++L++I E++       V+E+G G G LT+ LL  G + V  IE D+ 
Sbjct: 9   RKRFGQHWLRDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++     P    + Q D L+   E   +     +++AN+PYNI   LL   +   
Sbjct: 69  LVDGLQERFEAQPG-FSLHQGDVLEAPME-LSDGRIADKVVANIPYNITGPLLERLVGRL 126

Query: 142 TWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             P  P ++ L LL QKEV ERI A+     +  LSV      +   +  + P  F P P
Sbjct: 127 DRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLARCRSVCPVPPRCFQPPP 186

Query: 200 KVTSTVIHF--IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---- 252
           KV S VI    +P    + P     ++ + ++AF  RRK LR +L  +   + L +    
Sbjct: 187 KVQSEVICLEPLPASERVEPALAARVESLLKQAFLARRKMLRNTLAGVAEPDRLKELAAS 246

Query: 253 AGIETNLRAENLS 265
           AG     R + L+
Sbjct: 247 AGFSLQQRPQELA 259


>gi|237785136|ref|YP_002905841.1| dimethyladenosine transferase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758048|gb|ACR17298.1| dimethyladenosine transferase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 309

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 133/271 (49%), Gaps = 18/271 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL +   KV  +E 
Sbjct: 35  VVPTKKRGQNFVVDPNTVRRIVATADLSPDDHVLEVGPGLGSLTLGLLDV-VSKVTAVEI 93

Query: 79  D----QQFFPILKDISSQHPNRLEIIQDDALKV--DFEKFFNISSPIRIIANLPYNIGTR 132
           D    +Q    + + ++     L++I  DAL +     K    + P   +ANLPYN+   
Sbjct: 94  DTTLAEQLPHTVAEYAATRAENLDVICADALALTGSVAKDLGTNPPTAFVANLPYNVAVP 153

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +L + +  + +P     L ++ Q EV +R+ A+  +  YG  SV   +  +   +  I  
Sbjct: 154 ILLHVL--EIFPTITRVL-VMVQAEVADRLAAEPGNRVYGVPSVKARFYGQVQRVGAIGK 210

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLK-----RL 244
           +VF+P+P V S ++       P P        L  I   AF +RRKTLR +LK       
Sbjct: 211 NVFWPAPNVDSGLVKLTRGTRPWPTDSAARSQLWPIIDAAFAQRRKTLRAALKGHYGNAA 270

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNI 275
             EN L +AGI+   R E LSI++F  +  +
Sbjct: 271 AAENALREAGIDPQRRGETLSIDEFISLAQL 301


>gi|11499372|ref|NP_070611.1| dimethyladenosine transferase (ksgA) [Archaeoglobus fulgidus DSM
           4304]
 gi|27151555|sp|O28491|RSMA_ARCFU RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|2648762|gb|AAB89464.1| dimethyladenosine transferase (ksgA) [Archaeoglobus fulgidus DSM
           4304]
          Length = 244

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 120/258 (46%), Gaps = 26/258 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K +GQ+ L+D  ++ +I   +   +   V+E+G G GNLT  LL   +  V+ IEKD  
Sbjct: 4   RKSLGQHMLVDRRVISRIVGYAELSEDDVVLEVGCGTGNLTSALLRKCS--VVGIEKDPL 61

Query: 82  FFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L++  S      R  +IQ DALKVDF  F       + +AN+PY I + L F  + 
Sbjct: 62  MVKRLRERFSDFIGKGRFRLIQGDALKVDFPYF------TKFVANIPYKISSPLTFKLLK 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D     +    +++Q+E  ER+  + N     RL V++    KA ++  + P  F P P
Sbjct: 116 TD-----FRLAVVMYQREFAERLCGEDN-----RLGVISKTYCKAEILEIVKPSSFNPPP 165

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL----RQSLKRLGGENLLHQAGI 255
           KV S ++  +P         E  +K    AF  RRK +    ++  KR G E  +++   
Sbjct: 166 KVESAIVRIVPEPEVFVENRELFEKFVTFAFSMRRKRMGKIVQEFRKRYGVELAVNKNLA 225

Query: 256 ETNLRAENLSIEDFCRIT 273
           E   R E L    F  I 
Sbjct: 226 EK--RPEELGARKFAEIV 241


>gi|302821163|ref|XP_002992246.1| hypothetical protein SELMODRAFT_186635 [Selaginella moellendorffii]
 gi|300140013|gb|EFJ06743.1| hypothetical protein SELMODRAFT_186635 [Selaginella moellendorffii]
          Length = 312

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 14/218 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I++ I + +G      V+EIG G GNLT  LL + A+KVI +E D + 
Sbjct: 26  KSRGQHILKNPLIVQSIVQKAGLKSTDIVLEIGPGTGNLTVKLLEV-AKKVIAVELDPRM 84

Query: 83  FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L+      P  N L+IIQ D LK +   +F++      +AN+PY I + L F  +S 
Sbjct: 85  VLELQRRVQGTPQANHLQIIQGDVLKTELP-YFDVC-----VANIPYQISSPLTFKLLSH 138

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P + +  ++FQKE   R+ A+   P Y RLSV T    +   +  +  + F P PK
Sbjct: 139 R---PLFRAAVIMFQKEFAMRLVAKPADPLYCRLSVNTQLLARVDHLLKVGKNNFRPPPK 195

Query: 201 VTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTL 237
           V S+V+   P  NP+ P   +    + +  F ++ KTL
Sbjct: 196 VDSSVVRIEPR-NPLPPVSFKEWDGLVRLCFNRKNKTL 232


>gi|157163959|ref|YP_001467822.1| dimethyladenosine transferase [Campylobacter concisus 13826]
 gi|171855081|sp|A7ZGB4|RSMA_CAMC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|112801728|gb|EAT99072.1| dimethyladenosine transferase [Campylobacter concisus 13826]
          Length = 280

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 23/278 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK+ GQNFL D   L KI ++    D   V+EIG G G+LT  LL +   K    E 
Sbjct: 2   IKAKKHFGQNFLQDKATLDKIIQAIPK-DVENVVEIGPGLGDLTFRLLQI--YKTTSFEI 58

Query: 79  DQQFFPILK-DISSQHPN-RLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLF 135
           D++ F ILK   +++  N +L++   DAL+  +++   +SS    ++ANLPY + T+++ 
Sbjct: 59  DRELFQILKVKFANEIQNGQLKLFCKDALE-QWQQEGGLSSENYFLVANLPYYVATKMIL 117

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           N I  +        L ++ QKEV  + +A+     +  LS+L   + +  ++FD+   +F
Sbjct: 118 NAIDDEKCL----GLIVMIQKEVALKFSAKSKDKEFSALSILASLQGRCELLFDVDAKLF 173

Query: 196 FPSPKVTSTVIHF-----IPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLK----R 243
            P PKVTS+VI       I   + I       E+ K   + AF   RKTL ++L     +
Sbjct: 174 NPPPKVTSSVIKLQKTKKIFGKDGIFKDAKQYEAFKAFLRAAFASPRKTLLKNLSTNFDK 233

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
              E +     + TNLR   L ++ + +I  I  ++ +
Sbjct: 234 KALEEIFENMNLATNLRPHELDVDSYLKIFEITKEDNE 271


>gi|167750299|ref|ZP_02422426.1| hypothetical protein EUBSIR_01273 [Eubacterium siraeum DSM 15702]
 gi|167656659|gb|EDS00789.1| hypothetical protein EUBSIR_01273 [Eubacterium siraeum DSM 15702]
          Length = 287

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 130/269 (48%), Gaps = 20/269 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL++  +  KIAE  G+   +  IEIG G G LT+ L      KV  IE D   
Sbjct: 22  KSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGVLTRELAK-RCEKVAAIEIDTGL 80

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPYNIGTRLLFNWIS 139
            PIL +   ++ N +E+I  D ++ D  K      P   + + ANLPY I + ++   + 
Sbjct: 81  KPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDMDVIVCANLPYYITSPVIMKLLE 139

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +  P   +++T++ Q E  +RI A   S   G ++    +  K   +F ++   F P+P
Sbjct: 140 -EKLP--IKAITVMVQLEAADRICAAVGSRECGAITASINYYAKPKKLFRVNRGSFMPAP 196

Query: 200 KVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSL-------KRLGGENL 249
            V S VI    +  P P  +++     ++ ++AF +RRK L   +       K +  E  
Sbjct: 197 NVDSAVISLERYEQP-PYKVDNEPLFFEVIKQAFAQRRKQLANPVSAYFKIPKAVLAEK- 254

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278
           + + GI    RAE L++ +  ++  I+ +
Sbjct: 255 MTEGGIPATARAEQLTMAELVKLYEIIDE 283


>gi|118475585|ref|YP_892919.1| dimethyladenosine transferase [Campylobacter fetus subsp. fetus
           82-40]
 gi|171473008|sp|A0RRT6|RSMA_CAMFF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118414811|gb|ABK83231.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) [Campylobacter fetus subsp. fetus
           82-40]
          Length = 268

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 25/251 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D NI  +I ++  + D   ++EIG G G+LTQ L+ L +  +   E D +
Sbjct: 5   KKKFGQNFLQDENIKNQIIQAIPN-DVKRIVEIGPGLGDLTQKLVKLDSM-IDCFEIDSE 62

Query: 82  FFPILKDI--SSQHPNRLEIIQDDAL----KVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            + IL D   S     +L II  DAL    K+   ++F       ++ANLPY + T ++ 
Sbjct: 63  LYTILLDKFRSELDSGKLNIINSDALNAWDKLSASEYF-------LVANLPYYVATNMIL 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             I         + L ++ Q+EV  + +++     +  L++LT  + K  ++FD+    F
Sbjct: 116 KAIDDKNC----KGLVVMIQREVAIKFSSEAGDKEFSSLAILTWLKGKCELLFDVPSSAF 171

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            P PKV S+VI  I   +  +    ++ K   + AF   RKTL ++L      NL+ +  
Sbjct: 172 NPPPKVISSVIRIIKDRDLSLNLKYDNFKNFLRVAFSAPRKTLLKNL-----SNLVQRDR 226

Query: 255 IETNLRAENLS 265
           +E     ENLS
Sbjct: 227 LEIFFNTENLS 237


>gi|269792402|ref|YP_003317306.1| dimethyladenosine transferase [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100037|gb|ACZ19024.1| dimethyladenosine transferase [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 267

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 124/253 (49%), Gaps = 14/253 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQNFL++  I ++I +++       V+EIG G G LT+ +L    + ++ +E D++   
Sbjct: 12  IGQNFLINRGIAERIVDAAQISPQDIVLEIGPGKGVLTRQILATPCKALVAVELDRRLEE 71

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            L  I+ Q P RL +I  DAL++D  +      P +++ANLPY+I T +++  +  +  P
Sbjct: 72  FLSPIAQQDP-RLSLIWGDALRLDLSRDIPF-HPTKVVANLPYHITTPIVWKLLE-ELAP 128

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSV---LTGWRTKATMMFDISPHVFFPSPKV 201
                + L+ Q+E   R+           L V     GW +KA     + P  F P PKV
Sbjct: 129 LGLVRMVLMVQREAAMRMLQGAKGKDRSPLGVTLEAMGWVSKA---ISVPPGAFRPIPKV 185

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGIE 256
            S+VI      N         +++ + +F +RRK L  + +  G     GE  +   G+ 
Sbjct: 186 NSSVIRIDIDKNRELPTDPRWRRMLKASFSQRRKNLLNNWQAAGIPREEGERRIEALGLM 245

Query: 257 TNLRAENLSIEDF 269
            N RAE L+++ +
Sbjct: 246 ANARAEELTLDQW 258


>gi|269957508|ref|YP_003327297.1| dimethyladenosine transferase [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306189|gb|ACZ31739.1| dimethyladenosine transferase [Xylanimonas cellulosilytica DSM
           15894]
          Length = 303

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 127/274 (46%), Gaps = 17/274 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D   ++KI  ++G   G  V+E+G G G+LT  LL  G
Sbjct: 14  IRELAGRLGVRPTKTLGQNFVHDAGTVRKIVRAAGLRPGQRVVEVGPGLGSLTLGLLEAG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQH-PNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           A  V+ +E D      +     +H P    E++  DAL V   +      P  ++ANLPY
Sbjct: 74  A-SVVAVEIDPVLAGEIPATVQRHLPGADFEVVLSDALDV---RTLPGEPPTALVANLPY 129

Query: 128 NIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           N+   +L   +   D+     ES+ ++ Q EV +RI A   S  YG  SV   W  +A  
Sbjct: 130 NVAVPVLLTMLERFDS----LESVLVMVQAEVADRIAAAPGSKIYGIPSVKAAWYARAWR 185

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLG 245
              +S +VF+P P V S ++       P      E +  +   AF +RRKTLR +L  L 
Sbjct: 186 SLTVSRNVFWPVPNVDSALVALERRDPPTTAATREQVFTVVDAAFAQRRKTLRAALSGLF 245

Query: 246 GEN-----LLHQAGIETNLRAENLSIEDFCRITN 274
           G        L  A ++   R E L +  F RI  
Sbjct: 246 GSGPAAEAALRAADVDPGARGETLDVTAFARIAE 279


>gi|70953687|ref|XP_745929.1| dimethyladenosine transferase [Plasmodium chabaudi chabaudi]
 gi|56526401|emb|CAH78914.1| dimethyladenosine transferase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 379

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 113/231 (48%), Gaps = 11/231 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI  ++       V+EIG G GNLT  LL L A+KVI I+ D + 
Sbjct: 75  KKHGQHLLKNPGILDKIIIAAKIKSSDVVLEIGCGTGNLTIKLLPL-AKKVITIDIDARM 133

Query: 83  FP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              + K    +  + LE+ + DA+K  F +F ++ +     AN+PY I + L+F  I+  
Sbjct: 134 ISEVKKRCLYEGYSNLEVYEGDAIKTIFPRF-DVCT-----ANIPYKISSPLIFKLIA-- 185

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P ++   L+FQKE  ER+ A     +Y RL+V      +   + ++    F P PKV
Sbjct: 186 -HRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCRVIKVCNVDRSSFNPPPKV 244

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S V+  IP  N      +    + +  F ++RKTL    KR    N+L  
Sbjct: 245 DSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 295


>gi|325067303|ref|ZP_08125976.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Actinomyces oris K20]
          Length = 188

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 89/181 (49%), Gaps = 10/181 (5%)

Query: 73  VIVIEKD---QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLP 126
           +I +E D    +  PI + D       RL +IQ DAL +        +   P R++ANLP
Sbjct: 1   MIAVEIDPALARALPITVADRMPPAAGRLTLIQADALSITGPDSLGDAGHPPTRLVANLP 60

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YN+   +L   + A    P  ES+T++ Q EV +R+ A+  S  YG  SV   W   A  
Sbjct: 61  YNVAVPVLLTALEAL---PSLESVTVMVQAEVADRLAAEPGSRTYGVPSVKAAWYAAARR 117

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245
              IS HVF+P P V S ++  +    P      E +  +   AF +RRKTLR++L RL 
Sbjct: 118 TLTISRHVFWPVPNVDSALVELVRRRPPTTRATREQVFAVVDAAFAQRRKTLRKALARLA 177

Query: 246 G 246
           G
Sbjct: 178 G 178


>gi|302800922|ref|XP_002982218.1| hypothetical protein SELMODRAFT_116036 [Selaginella moellendorffii]
 gi|300150234|gb|EFJ16886.1| hypothetical protein SELMODRAFT_116036 [Selaginella moellendorffii]
          Length = 312

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 111/218 (50%), Gaps = 14/218 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +++ I + +G      V+EIG G GNLT  LL + A+KVI +E D + 
Sbjct: 26  KSRGQHILKNPLVVQSIVQKAGLKSTDIVLEIGPGTGNLTVKLLEV-AKKVIAVELDPRM 84

Query: 83  FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L+      P  N L+IIQ D LK +   +F++      +AN+PY I + L F  +S 
Sbjct: 85  VLELQRRVQGTPQANHLQIIQGDVLKTELP-YFDVC-----VANIPYQISSPLTFKLLSH 138

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P + +  ++FQKE   R+ A+   P Y RLSV T    +   +  +  + F P PK
Sbjct: 139 R---PLFRAAVIMFQKEFAMRLVAKPADPLYCRLSVNTQLLARVDHLLKVGKNNFRPPPK 195

Query: 201 VTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTL 237
           V S+V+   P  NP+ P   +    + +  F ++ KTL
Sbjct: 196 VDSSVVRIEPR-NPLPPVSFKEWDGLVRLCFNRKNKTL 232


>gi|291276278|ref|YP_003516050.1| putative dimethyladenosine transferase [Helicobacter mustelae
           12198]
 gi|290963472|emb|CBG39302.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Helicobacter mustelae 12198]
          Length = 260

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 12/256 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL D + + KI +S  ++     ++EIGAG G+L+  LL L   K   I+ D 
Sbjct: 6   KKKFGQNFLKDKDCIHKIIQSIPNIHTDEQIVEIGAGLGDLSDELLKLYPIKAYEIDSDL 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                 K  S+    RL++I  D L +   K +    P  +++NLPY + T ++   +  
Sbjct: 66  CSLLRKKYHSALDSARLKLIHQDVLDLPNSKGWLHQEPYVLVSNLPYYVATHIILKILK- 124

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P  +   ++ QKEV +R  A+    H+  LS+LT    + + +FD+    F P P+
Sbjct: 125 ---DPLCQGFVVMTQKEVAQRFCAKSGESHFCALSILTQTFGQVSYLFDVPAIAFEPVPR 181

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE---- 256
           VTS V  F  ++  I    E++ KI   AF   RK L ++L     + +L +  +E    
Sbjct: 182 VTSAVFSFKKNIAMIDEDFENMLKI---AFCAPRKKLLKNLATHYDKTVLQKVFMELRIP 238

Query: 257 TNLRAENLSIEDFCRI 272
            ++RA  L   ++ +I
Sbjct: 239 LDVRAHQLENSNYHQI 254


>gi|313678187|ref|YP_004055927.1| dimethyladenosine transferase [Mycoplasma bovis PG45]
 gi|312950337|gb|ADR24932.1| dimethyladenosine transferase [Mycoplasma bovis PG45]
          Length = 262

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 124/262 (47%), Gaps = 14/262 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL + +++KKI +     +G  ++EIG G G LT+ L+     K +  E D  
Sbjct: 11  KKKFGQNFLNNADVVKKIIDIINP-EGKKILEIGPGTGALTKFLVD-KCSKYVAFEIDTD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L + +  +    E+I  D L+ D  ++    +   ++ N+PY I + ++   I   
Sbjct: 69  MIAFLNENNYFNLGSTELIHKDFLEADLNQY----ACFEVVGNIPYYITSDIILKIIDNR 124

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                ++  TLL QKEV +RI A  NSP Y +LS+   +  K      +  + F P PKV
Sbjct: 125 F---LFKRATLLVQKEVADRIIATPNSPDYSKLSITCQYVAKVKKELFVGRNNFTPVPKV 181

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIET 257
            S ++ F  + N       +LK   +  F  RRK L  SLK+   +  +  A     I+ 
Sbjct: 182 DSAIVTFDFYQNK-DDNYSNLKPFFKLCFSARRKKLMWSLKQTYNQEKVQNAYKTLNIDE 240

Query: 258 NLRAENLSIEDFCRITNILTDN 279
           N+R + L+++   ++   L  N
Sbjct: 241 NIRIQQLNLDTIIKLYEQLESN 262


>gi|307172086|gb|EFN63666.1| Probable dimethyladenosine transferase [Camponotus floridanus]
          Length = 263

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 12/232 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I++ + E +       V+EIG G GN+T  +L   A+KVI  E D + 
Sbjct: 22  KSKGQHILKNPLIIQSMVEKAALKPTDVVLEIGPGTGNMTVKMLE-KAKKVIACEIDPRM 80

Query: 83  FPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L+     + + ++L+I+  D LK D   FF++      +AN+PY I + L+F  +S 
Sbjct: 81  VAELQKRVQGTVYQSKLQIMVGDVLKSDLP-FFDLC-----VANIPYQISSPLIFKLLSH 134

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P +    L+FQ+E  ER+ A+     Y RLS+ T    +  M+  +  + F P PK
Sbjct: 135 R---PIFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPK 191

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           V S V+   P   P P   +    +T+ AF ++ KTL  + K+     LL +
Sbjct: 192 VESNVVRIEPRNPPPPINYQEWDGLTRIAFIRKNKTLSATFKQTTVITLLEK 243


>gi|268608155|ref|ZP_06141882.1| dimethyladenosine transferase [Ruminococcus flavefaciens FD-1]
          Length = 285

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 134/274 (48%), Gaps = 22/274 (8%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           ++++ IL  +     K +GQNF+++ +I  KIAE   +  G  V+EIG G G LT  L  
Sbjct: 7   NTVRDILERHGFSFSKGLGQNFIINPDICPKIAEMGNAQAGYGVLEIGTGIGVLTAELAK 66

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR-----II 122
             A KV  +E D +  PIL++  S   N ++I  +D +K D +K   I+   +     + 
Sbjct: 67  R-ADKVCAVEIDTRLLPILEETLSDFDN-IKIFNEDIMKCDLQKL--IAEEFQGLHTAVC 122

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I + ++   + +   P   +S+T++ QKE  +R+ A+  +   G ++V   +  
Sbjct: 123 ANLPYYITSPVIMLLLES-KLP--IDSITVMVQKEAAQRLCAKVGTRDSGAITVGVNYYG 179

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFGKRRKTLRQ 239
               +F++S   F P+P V S VI    H +      E  K   K+ +  F +RRKT   
Sbjct: 180 TVKSLFNVSRGSFMPAPNVDSAVIRIDLH-SEHRLSEEDEKFFFKVVKSGFSQRRKTAAN 238

Query: 240 SLKRLGG------ENLLHQAGIETNLRAENLSIE 267
           ++  L G       + L   G+    R E+L ++
Sbjct: 239 AVSSLMGIPKEKVYSALKAVGLPETARIESLDMD 272


>gi|242015107|ref|XP_002428215.1| dimethyladenosine transferase, putative [Pediculus humanus
           corporis]
 gi|212512776|gb|EEB15477.1| dimethyladenosine transferase, putative [Pediculus humanus
           corporis]
          Length = 306

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 12/224 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+ L +  +++ + E +       V+EIG G GN+T  LL   A+KVI  E D +
Sbjct: 24  KKSAGQHILKNPLVIQNMVEKAALKSTDIVLEIGPGTGNMTVKLLD-KAKKVIACEVDVR 82

Query: 82  FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L+      P  ++LEII  D LK +   FFN       +AN+PY I + L+F  + 
Sbjct: 83  MVAELQKRVQCTPYQSKLEIIVGDVLKSELP-FFNAC-----VANIPYQISSPLVFKLL- 135

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                PF+    L+FQKE   R+ A+     Y RLS+ T    +  ++  ++ + F P P
Sbjct: 136 --LHRPFFRCAILMFQKEFAHRLVAKPGDKLYCRLSINTQLLARVDIVMKVAKNNFRPPP 193

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           KV S+V+   P   P P   +    +T+ AF ++ KTL  + ++
Sbjct: 194 KVESSVVRIEPRNPPPPIQFKEWDGLTRIAFLRKNKTLGAAFRQ 237


>gi|296123743|ref|YP_003631521.1| dimethyladenosine transferase [Planctomyces limnophilus DSM 3776]
 gi|296016083|gb|ADG69322.1| dimethyladenosine transferase [Planctomyces limnophilus DSM 3776]
          Length = 314

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 131/294 (44%), Gaps = 38/294 (12%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L  +    +I P+  +GQNFL+D+N+++ +A  +       V+E+G G G LT + L   
Sbjct: 12  LTELFHKLRINPRGDLGQNFLIDINLVELVAREAQLSKDDVVLEVGTGTGGLT-IFLAAE 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK------------VDFEKFFNI 115
           A +V+ IE D     I    + QH   + ++ +  DALK            V+       
Sbjct: 71  AGEVVSIEYDPNMHAI---ATKQHAGLSNVQWVNTDALKNKNQLHPLLVESVNTALARRP 127

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
            S ++++ANLPYNI T ++ + I    WP  W  + +  Q E+  R+ A   S  Y  LS
Sbjct: 128 GSTLKLVANLPYNIATPVI-SMIVGSEWP--WSRMVVTVQWEMAVRMQATPGSSDYSGLS 184

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK------KITQEA 229
           +    +    ++  + P VF+P PK+ S V+     + P P   + +          +  
Sbjct: 185 IWLQSQCDIEILRKLPPDVFWPRPKIDSAVV----LVTPAPARRDRIADPEFFHNYLRAI 240

Query: 230 FGKRRKTLRQSLKRLGGE-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           F  RRK LR  L     +        LL QAGI    RAE L  E    + N+L
Sbjct: 241 FMHRRKLLRGVLCSTYSQVAKPRIDELLQQAGITPQARAEELPTEIHVALANLL 294


>gi|305432594|ref|ZP_07401755.1| dimethyladenosine transferase [Campylobacter coli JV20]
 gi|304444305|gb|EFM36957.1| dimethyladenosine transferase [Campylobacter coli JV20]
          Length = 264

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 22/259 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK+ GQNFL D +IL KI ++    D   ++EIG G G+LTQ LL +   K   I+ D  
Sbjct: 5   KKHYGQNFLNDKSILSKIIQAIPK-DTENIVEIGPGLGDLTQELLKVSHVKAYEIDDD-- 61

Query: 82  FFPILKDISSQHPN--RLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
             PIL+    +  +  +L ++  DA K+   D +K+F       ++ANLPY + + L+  
Sbjct: 62  LIPILRKKFQKELDCGKLNLLHQDASKLACFDEKKYF-------LVANLPYYVASHLILQ 114

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ QKE+  +  A      +  L VL+    +  ++FD+ P  F 
Sbjct: 115 ALEDKNCS----GLIVMVQKEMALKFCAHSGESDFSALGVLSAMICEREILFDVEPECFN 170

Query: 197 PSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQA 253
           P PKV S V+  I        C + + K   ++ F   RK L  +LK  +     L  + 
Sbjct: 171 PPPKVVSAVMKMIKFRAYQDLCEIHAFKAFLKDCFKAPRKQLLGNLKIHKAKLTELFQEL 230

Query: 254 GIETNLRAENLSIEDFCRI 272
            +  NLR   L ++ + +I
Sbjct: 231 KLNLNLRPHELCVDSYLKI 249


>gi|261415778|ref|YP_003249461.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372234|gb|ACX74979.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326044|gb|ADL25245.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 261

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 118/255 (46%), Gaps = 17/255 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL D+     IA    +  G  V+EIG G G LT+ LL  G  ++  +E D+Q
Sbjct: 6   RRKFGQNFL-DVETATAIAGDLPAEAGEFVLEIGPGHGALTEHLLNRGL-ELTAVEIDEQ 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +L +    + N   I+  D LK D + F +  +   +  NLPYN+ T ++     A 
Sbjct: 64  CVEVLNEKFKDYKN-FNIVNIDFLKFDLQAFLDAHAKPWVTGNLPYNVSTAII-----AG 117

Query: 142 TWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             P     +    + Q EV ERI A+  S +YG LSVL        ++  I P  F P P
Sbjct: 118 LMPRLHLTKGFMGMVQLEVAERICAEPCSSNYGSLSVLVSAFANTQILRKIGPEHFTPKP 177

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE--- 256
            V S  +   P  + I    +      + AF ++RKTL  S  R   +  + QA IE   
Sbjct: 178 NVDSATMLLTPREDAIQAP-DGFFDFVRTAFTQKRKTLANSFGRNYDKKKI-QATIELLD 235

Query: 257 --TNLRAENLSIEDF 269
             T +RAE LS E F
Sbjct: 236 WPTTIRAEELSPEQF 250


>gi|164655863|ref|XP_001729060.1| hypothetical protein MGL_3848 [Malassezia globosa CBS 7966]
 gi|159102949|gb|EDP41846.1| hypothetical protein MGL_3848 [Malassezia globosa CBS 7966]
          Length = 330

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 14/228 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A++V+V+E D +    
Sbjct: 53  GQHILKNPLVAQGIVDKANLKPTDTVLEVGPGTGNLTVRILE-KAKRVVVVEMDPRMAAE 111

Query: 86  LKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L       P   +LEI+  D  K D   +F++     +I+N PY I + L+F  +S    
Sbjct: 112 LTKRVQGKPEQRKLEIVIGDVCKTDLP-YFDV-----VISNTPYQISSPLVFKLLSHR-- 163

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P +    L+FQ+E   R+ A+  SP +GRLS       K   +  ++   F P P+V S
Sbjct: 164 -PLFRCAILMFQREFAMRLVARPGSPLWGRLSANVQLYAKVDHIMKVARGSFRPPPQVDS 222

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           +V+  +P   P P   E    +T+  F +R K LR      G   +L 
Sbjct: 223 SVVRIVPLNPPPPIKFEEFDGLTRIVFSRRNKVLRACF--FGARGVLE 268


>gi|72160809|ref|YP_288466.1| dimethyladenosine transferase [Thermobifida fusca YX]
 gi|119365858|sp|Q47SX4|RSMA_THEFY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71914541|gb|AAZ54443.1| dimethyladenosine transferase [Thermobifida fusca YX]
          Length = 287

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 121/277 (43%), Gaps = 21/277 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   I P K +GQNF++D   +++I  ++       V+E+G G G+LT  LL   
Sbjct: 17  VRRLAAQLGIRPTKTLGQNFVIDPGTVRRIVRAAQVSPDDVVVEVGPGLGSLTLALLP-H 75

Query: 70  ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            R V  +E D +    L    + H     +RL ++  DAL++          P  ++ANL
Sbjct: 76  VRHVTAVEIDPRLAEALPGTVADHAPAYAHRLRVVTADALRI---TELPDPQPTALVANL 132

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   ++ + ++        E   ++ Q EV ER+ A+     YG  S    W     
Sbjct: 133 PYNVAVPVVLHLLNLLP---SLEHGLVMVQAEVAERLAARPGDRAYGAPSAKIAWYADVR 189

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLR---- 238
               I   VF+P P V S ++       P P      E +  +   AF +RRKTLR    
Sbjct: 190 RAGAIGRTVFWPVPNVDSGLVAL--RRRPAPPTKASREDVFAVVDAAFAQRRKTLRAALS 247

Query: 239 -QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
             +      E  L  AG++   R E L I DF RI  
Sbjct: 248 SWAGSAAAAEAALRSAGVDPRSRGETLGIADFARIAE 284


>gi|257461216|ref|ZP_05626314.1| dimethyladenosine transferase [Campylobacter gracilis RM3268]
 gi|257441590|gb|EEV16735.1| dimethyladenosine transferase [Campylobacter gracilis RM3268]
          Length = 287

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 11/201 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           I  KK  GQNFL D  +L KI ++  GS+    V+EIGAG G+LT+ LL     ++   E
Sbjct: 2   IRAKKEFGQNFLKDEAVLSKIIQAIPGSVQ--NVVEIGAGLGDLTRKLLEF--YRLKSFE 57

Query: 78  KDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D+  + IL    +Q      LE++  DAL++  E+         ++ANLPY + T+++ 
Sbjct: 58  IDEDLYQILSAKFAQQIASGELELVLGDALRIWQERRGLERGEYFLVANLPYYVATKMIL 117

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             I  +    F     ++ QKEV  +  A+     +  LS+L        ++FD+ P  F
Sbjct: 118 QAIDDELCGGFL----VMIQKEVALKFCARAGQSDFSALSILADLAGGCELLFDVEPDCF 173

Query: 196 FPSPKVTSTVIHFIPHLNPIP 216
            P+PKVTS+VI  I   N  P
Sbjct: 174 EPAPKVTSSVIRLIKGKNFKP 194


>gi|150399067|ref|YP_001322834.1| dimethyladenosine transferase [Methanococcus vannielii SB]
 gi|166221678|sp|A6UP00|RSMA_METVS RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|150011770|gb|ABR54222.1| dimethyladenosine transferase [Methanococcus vannielii SB]
          Length = 267

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 13/185 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ FL D N +KK  +S+   +   V+E+G G G LT+ L  L A+ V VIE D + 
Sbjct: 5   KKLGQCFLKDKNFVKKAIKSADITENDIVLEVGLGEGALTKELAKL-AKFVYVIELDMRL 63

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISAD 141
            P    I S+  N +++I +DALKVD ++  FN     +I+ANLPY I + + F ++  D
Sbjct: 64  EPFANQIMSEFKN-VKVIWNDALKVDLKELGFN-----KIVANLPYQISSPITFKFLEND 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                ++   L++Q E  +R+  + ++  Y RLSV   + +    +  + P  F P P V
Sbjct: 118 -----FDVAVLMYQYEFAKRMIGKPDTDEYSRLSVSIQYNSDVEFICKVPPTAFSPKPDV 172

Query: 202 TSTVI 206
            S ++
Sbjct: 173 NSAIV 177


>gi|57504575|ref|ZP_00370687.1| dimethyladenosine transferase [Campylobacter coli RM2228]
 gi|57019470|gb|EAL56164.1| dimethyladenosine transferase [Campylobacter coli RM2228]
          Length = 263

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 22/259 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK+ GQNFL D +IL KI ++    D   ++EIG G G+LTQ LL +   K   I+ D  
Sbjct: 4   KKHYGQNFLNDKSILSKIIQAIPK-DTENIVEIGPGLGDLTQELLKVSHVKAYEIDDD-- 60

Query: 82  FFPILKDISSQHPN--RLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
             PIL+    +  +  +L ++  DA K+   D +K+F       ++ANLPY + + L+  
Sbjct: 61  LIPILRKKFQKELDCGKLNLLHQDASKLACFDEKKYF-------LVANLPYYVASHLILQ 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ QKE+  +  A      +  L VL+    +  ++FD+ P  F 
Sbjct: 114 ALEDKNCS----GLIVMVQKEMALKFCAHSGESDFSALGVLSAMICEREILFDVEPECFN 169

Query: 197 PSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQA 253
           P PKV S V+  I        C + + K   ++ F   RK L  +LK  +     L  + 
Sbjct: 170 PPPKVVSAVMKMIKFRAYQDLCEIHAFKAFLKDCFKAPRKQLLGNLKIHKAKLTELFQEL 229

Query: 254 GIETNLRAENLSIEDFCRI 272
            +  NLR   L ++ + +I
Sbjct: 230 KLNLNLRPHELCVDSYLKI 248


>gi|315585815|gb|ADU40196.1| dimethyladenosine transferase [Helicobacter pylori 35A]
          Length = 271

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I ++   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRSKLK--AQKKPFTLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L  +P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQVPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|147794654|emb|CAN73506.1| hypothetical protein VITISV_007907 [Vitis vinifera]
          Length = 383

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 105/222 (47%), Gaps = 12/222 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   S      TV+EIG G GNLT  LL   A++V+ +  D + 
Sbjct: 50  KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQ-AAQRVVAVXLDARM 108

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL+   ++H   ++L +I  DALK DF +F        ++AN+PY I + L+   +  
Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               PF  S TLL QKE   R+ A      + RL+V      +   + D+S   F P PK
Sbjct: 163 AN--PF-RSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           V S+V+   P        L      T+  F K+ KTL  + K
Sbjct: 220 VDSSVVTIRPKAEIPDVDLNEWCAFTRTCFSKKNKTLGATFK 261


>gi|322493412|emb|CBZ28699.1| ribosomal RNA adenine dimethylase family protein,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 374

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 13/231 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S  +KT  S   I+  K  GQ+ L +  ++  I E +       VIEIG G GNLT+ LL
Sbjct: 57  SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
              A+KVI  E D +    L       P  ++L+II+ + L+ DF  F       + +AN
Sbjct: 117 QT-AKKVIAFEIDPRMMAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV +    + 
Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235
           + +  IS + F P PKV S+VI   P   P     E    + +  F ++ K
Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPPPDVDFEEWDGLVKMLFSRKNK 276


>gi|284989485|ref|YP_003408039.1| dimethyladenosine transferase [Geodermatophilus obscurus DSM 43160]
 gi|284062730|gb|ADB73668.1| dimethyladenosine transferase [Geodermatophilus obscurus DSM 43160]
          Length = 288

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 127/275 (46%), Gaps = 19/275 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ +    ++ P K +GQNFL D N +++I  ++       V+E+G G      + L  
Sbjct: 17  AIRDLAQQLELRPTKALGQNFLHDANTIRRIVRTAELTREDVVLEVGPG-LGSLTLGLLP 75

Query: 69  GARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            A  V  +E D +   +L + ++ + P   +RL +++ DAL++   +     +P  ++AN
Sbjct: 76  AAAHVTAVEIDPRLAALLPRTVAERAPALADRLTVVEADALRI---REVPGRAPTALVAN 132

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +             +L Q EV ER+ A   SP YG  S    W  + 
Sbjct: 133 LPYNVAVPVLLHLLELLP---TLRRALVLVQAEVAERLAAAPGSPAYGVPSAKAAWYGEV 189

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243
               ++   VF+P P V S ++       P P    +    +   AF  RRK LR +L R
Sbjct: 190 RRAGNVGRRVFWPEPNVDSGLVAL--DRRPPPAGDRAATFTVIDAAFATRRKGLRAALAR 247

Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
             G     E  L  AGI+   R E LS+ DF R+ 
Sbjct: 248 WAGGPAAAEARLRAAGIDPTTRGEQLSVADFARLA 282


>gi|240102961|ref|YP_002959270.1| dimethyladenosine transferase [Thermococcus gammatolerans EJ3]
 gi|259494259|sp|C5A594|RSMA_THEGJ RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|239910515|gb|ACS33406.1| Ribosomal RNA adenine methylase transferase (Dimethyladenosine
           transferase) (ksgA) [Thermococcus gammatolerans EJ3]
          Length = 278

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 16/232 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +I+  Y + P + +GQNFL+  +I+++  + +   +  TV+EIG G G LT  L +  A 
Sbjct: 7   SIIYKYNLRPNRTLGQNFLIVPDIIERNVKRAELSEKDTVLEIGPGLGVLTDEL-SKKAG 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV  IE D +   IL+   S  PN +E+I+ DA+KV++ +F       ++++NLPY I +
Sbjct: 66  KVYAIEADSRMIEILQREYS-WPN-VELIKGDAVKVEWPEFN------KMVSNLPYQISS 117

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            + F  +  +     +E   L++Q E  ER+ A+    +Y RLS++   +    ++  I 
Sbjct: 118 PVTFKLLKHE-----FERAVLIYQLEFAERMIAKPGDRNYSRLSLMVQAKANVELVERIG 172

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
              F+P PKV S V+   P   P    +E  + + +  F  RR T+  +LK+
Sbjct: 173 RGAFWPRPKVDSAVVVLEP--KPEKERIELNENLVKALFQHRRSTVASALKK 222


>gi|221062011|ref|XP_002262575.1| dimethyladenosine transferase [Plasmodium knowlesi strain H]
 gi|193811725|emb|CAQ42453.1| dimethyladenosine transferase, putative [Plasmodium knowlesi strain
           H]
          Length = 519

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  +IE+G G G +++ L     +K+  +E D +   +L   S   P   + I DD L++
Sbjct: 270 GKGIIELGCGLGQISKFLFA-KYKKMTAVEIDSRALSVL---SRTMPG-FDFIHDDVLQI 324

Query: 108 DFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
           +++    +  + + +I NLP+ I +++LF  +    +  + E   +  Q EVG+RI ++ 
Sbjct: 325 NYKDLSKSKGTKLTVIGNLPFYITSQILFCLLD---YHHYIEQAIVTIQYEVGQRIISKP 381

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
           N  +Y  LS+L    T   ++F I    F+P PKV + V+  I   + + C L  LK+I 
Sbjct: 382 NEKNYSILSILFNLYTNPYLLFKIPSSAFYPVPKVEAAVMKIIFKHSNLNCNLLFLKEIL 441

Query: 227 QEAFGKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           + +F +RRK L+ SLKRL      E  L       +LR + L+   F  +TN L
Sbjct: 442 RHSFQQRRKKLKSSLKRLLAKYSTEGNLQLPSSFCDLRPQQLTPLQFVELTNFL 495


>gi|154149286|ref|YP_001407258.1| dimethyladenosine transferase [Campylobacter hominis ATCC BAA-381]
 gi|171769706|sp|A7I417|RSMA_CAMHC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|153805295|gb|ABS52302.1| dimethyladenosine transferase [Campylobacter hominis ATCC BAA-381]
          Length = 269

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 118/262 (45%), Gaps = 16/262 (6%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           I KK  GQNFL D N L KI ES    +   ++EIGAG G+LT  LL     K   I+KD
Sbjct: 3   IAKKKFGQNFLKDKNALNKIIESIPE-NAENIVEIGAGLGDLTYELLRKFKVKSYEIDKD 61

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              F   K        + E++  DALK  F K    +    ++ANLPY + T ++   I 
Sbjct: 62  LIEFLKSKFACELENRKFELVFGDALK--FWKNGLCNKNYFLVANLPYYVATNMILKAID 119

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +    F      + QKEV E+  A+     +G +SVL     K   +F +    F P+P
Sbjct: 120 DELCDGF----VAMVQKEVAEKFCAESGDSEFGGISVLADIFGKCEFLFSVPADSFEPAP 175

Query: 200 KVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--- 251
           KV S VI       I  +       E+ K   +  F   RKT+ ++L     + +L    
Sbjct: 176 KVVSAVIRLKKTRKIDDIFENSVQYENFKNFLKICFSSPRKTIMKNLSTKFDKEILQSIF 235

Query: 252 -QAGIETNLRAENLSIEDFCRI 272
            +  + TNLRA  L+   F +I
Sbjct: 236 EKLDLTTNLRAHELNFTLFFKI 257


>gi|313215231|emb|CBY42886.1| unnamed protein product [Oikopleura dioica]
          Length = 289

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 12/193 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  +++ + E +G L   T++EIG G GN+T  LL    +KVI +E D++    
Sbjct: 27  GQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVAE 85

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           ++      P  ++L II  DALK +   FF++     ++ANLPY I + + F  +     
Sbjct: 86  VQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLL---LH 136

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P +    L+FQKE  +R+ AQ     Y RLSV      +   +  +  + F P PKV S
Sbjct: 137 RPMFRVAVLMFQKEFADRLVAQPGDKIYSRLSVAVQSLARVDRILKVGKNNFKPPPKVES 196

Query: 204 TVIHFIPHLNPIP 216
           TV+   P   P+P
Sbjct: 197 TVVRIEPRRPPLP 209


>gi|196010894|ref|XP_002115311.1| hypothetical protein TRIADDRAFT_29342 [Trichoplax adhaerens]
 gi|190582082|gb|EDV22156.1| hypothetical protein TRIADDRAFT_29342 [Trichoplax adhaerens]
          Length = 280

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 112/231 (48%), Gaps = 14/231 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           MGQ+ L +  I+  I E +      TV+EIG G GNLT  LL   A+KVI  E D +   
Sbjct: 1   MGQHILKNPLIVNSIVEKAAIRSTDTVLEIGPGTGNLTVKLLQ-KAKKVIACEVDPRLAA 59

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P   +L II  D LK +   +F++      +ANLPY I +  +F  +    
Sbjct: 60  ELQKRVQGSPVSTKLHIIVGDVLKTELP-YFDVC-----VANLPYQISSPFVFKLL---L 110

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             P +    L+FQ+E   R+ A+     Y RLS+ T    K   +  +  + F P PKV 
Sbjct: 111 HRPLFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLAKVDHLIKVGKNNFRPPPKVE 170

Query: 203 STVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           S+V+   P +NP+ P   +    +T+  F ++ +TL  S K  G + +L +
Sbjct: 171 SSVVRIEP-INPVPPINFKEWDGLTRIVFARKNRTLSASFKTQGVQTMLEK 220


>gi|168011526|ref|XP_001758454.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690489|gb|EDQ76856.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 318

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 24/281 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQ+++L+  +   + E++    G  V+EIG G G+LT  L+  GA  +I +EKD 
Sbjct: 43  PKKWLGQHYMLNDQVNIDMVEAAKIQPGDLVLEIGPGTGSLTNALVEAGA-DIIAVEKDP 101

Query: 81  QFFPILKDISSQHPNRLEIIQDDALK--------VDFEKFFNISSP---IRIIANLPYNI 129
               ++ +    H  ++EII +D +K            K F  S P    ++IANLP+NI
Sbjct: 102 DMAALITE-RFGHCGQVEIINEDFVKWPAALYMQQALRKRFGESEPPPRAKVIANLPFNI 160

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMF 188
            T+++   +        +  + LL Q E   R + A  ++  Y  +S+L  + +     F
Sbjct: 161 TTQVVKQLLPLGCT---FSHIILLLQDEAAIRLVDASPDAEEYRPISILINFFSVPEYKF 217

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRL- 244
            +    F P PKV + V+ F        P    ++S   +   AF  +RK LR+SL+ L 
Sbjct: 218 RVERDNFLPPPKVDAGVVSFALKQESEYPQVSSIKSFFTMVNSAFNGKRKMLRKSLQHLH 277

Query: 245 ---GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
                ++ L   G+    R E L+++ F  + N L D + I
Sbjct: 278 SPEATKSALTSIGLLETARPEELTLDQFVALHNTLNDPETI 318


>gi|156542231|ref|XP_001600750.1| PREDICTED: similar to ENSANGP00000016944 [Nasonia vitripennis]
          Length = 306

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 12/227 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  I++ + E +       V+E+G G GN+T  +L   ++KVI  E 
Sbjct: 21  IVFNKDFGQHILKNPLIIQSMVEKAALRPTDVVLEVGPGTGNMTVKMLE-RSKKVIACEI 79

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P  ++L+I+  D LK+D   FF++      +AN+PY I + L+F 
Sbjct: 80  DTRMVAELQKRVMGTPIQSKLQIMVGDVLKMDLP-FFDLC-----VANVPYQISSPLVFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  ER+ A+     Y RLSV T    +  M+  +  + F 
Sbjct: 134 LL---LHRPLFRCAVLMFQREFAERLVAKPGDKDYCRLSVNTQLLARVDMLMKVGKNNFR 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           P PKV S V+   P   P P   +    +T+ AF ++ KTL  + K+
Sbjct: 191 PPPKVESNVVRIEPRNPPPPINYQEWDGLTRIAFVRKNKTLSAAFKQ 237


>gi|156539746|ref|XP_001600767.1| PREDICTED: similar to dimethyladenosine transferase [Nasonia
           vitripennis]
          Length = 262

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 17/199 (8%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  Y++   K + QNFL++  +  KI +S G +    V+E+G GPG +T+ +L  
Sbjct: 11  TIRDIIKLYRLSAIKQLSQNFLMNEALTDKIVKSVGKIYNSQVLEVGPGPGGITRSILKK 70

Query: 69  GARKVIVIEKDQQFFPIL---KDISSQHPNRLEIIQDDALKVDFEKFF--------NISS 117
             +K+IV+EKDQ+F PIL   + I S     + +I +D + ++ +  F        N   
Sbjct: 71  NPKKLIVVEKDQRFRPILDLMESIVSASDVDMTLIYNDIMSINTKDVFSFKDKKEWNDEC 130

Query: 118 P-IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           P I I+ NLP++I T L+  W+ A     + W      +TL FQKEV ER+ A       
Sbjct: 131 PNIFIVGNLPFSISTALIIKWLHAISKQKEAWSHGRVRMTLTFQKEVAERLVADVMGNQR 190

Query: 172 GRLSVLTGWRTKATMMFDI 190
            RLSV+    T   + F I
Sbjct: 191 CRLSVMAQTWTLPKLQFII 209


>gi|227504167|ref|ZP_03934216.1| dimethyladenosine transferase [Corynebacterium striatum ATCC 6940]
 gi|227199211|gb|EEI79259.1| dimethyladenosine transferase [Corynebacterium striatum ATCC 6940]
          Length = 284

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 22/281 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     + P K +GQNFL D N +++I  ++       V+E+G G G+LT  LL  
Sbjct: 11  EIRQLAEKLDVTPTKKLGQNFLHDPNTIRRIVAAADLQRDDRVVEVGPGLGSLTLGLLE- 69

Query: 69  GARKVIVIEKDQQFFPILKD-ISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRIIAN 124
               + V+E D +    L D I+ + P +   L +I+ DAL++       +  P  ++AN
Sbjct: 70  AVDDLTVVEIDPRLAAQLPDTIAERAPEQAGNLRLIEKDALRI---APGELGEPTALVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +  + +P     L ++ Q EV ER+ A+  +  YG  SV   +    
Sbjct: 127 LPYNVAVPVLLHLL--ELYPTIRRVLVMV-QLEVAERLAAKPGNKVYGVPSVKASFYGTV 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK-----ITQEAFGKRRKTLRQ 239
                I  +VF+P+P + S ++  I      P  ++   +     +   AF +RRKTLR 
Sbjct: 184 RQAGTIGKNVFWPAPNIESGLVR-IDCFQDAPWPIDDATRKAVFPLVDAAFAQRRKTLRA 242

Query: 240 SLK-RLGG----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           +L    GG    E  L  AGI+  LR E L++EDF R+  I
Sbjct: 243 ALSGHFGGGPAAEEALVAAGIDPRLRGEKLAVEDFVRLAGI 283


>gi|86608465|ref|YP_477227.1| dimethyladenosine transferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|119365854|sp|Q2JMR8|RSMA_SYNJB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|86557007|gb|ABD01964.1| dimethyladenosine transferase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 282

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 128/274 (46%), Gaps = 25/274 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSG------SLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           P+K  GQ++L D  + + I  ++         D   V+EIG G G LT+ LL  G  +V+
Sbjct: 4   PRKRFGQHWLKDPAVHEAILRAAQLNDLERGADPTWVLEIGPGTGQLTRRLLAQGV-QVV 62

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +E D+    +L+   +  P R  +++ D     F +      P  ++AN+PYN+   +L
Sbjct: 63  AVEIDRDLCRLLRKRFADQP-RFHLVEGD-----FLRLPLPPQPRLLVANIPYNLTGSIL 116

Query: 135 FNWISADTWPPF-WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
              + +   P   +E + LL QKE+ ER+ A   S  YG LS+ T +     ++  + P 
Sbjct: 117 EKVLGSPAQPVRQFERIVLLVQKELAERLQAGPGSKAYGALSLRTQYLADCELICRVPPT 176

Query: 194 VFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
            F P+PKV S VI   P   P     PC    L    ++ F  RRK L  +L  L    +
Sbjct: 177 AFKPAPKVESAVIRLTPRPAPTPVRDPCWFNHL---LRQGFSTRRKKLVNALGSLVEREV 233

Query: 250 ----LHQAGIETNLRAENLSIEDFCRITNILTDN 279
               L Q  +  + RAE L +  +  ++++L + 
Sbjct: 234 VAAALAQLRLNPDARAEELDLPHWLALSDLLLEK 267


>gi|116669774|ref|YP_830707.1| dimethyladenosine transferase [Arthrobacter sp. FB24]
 gi|166221643|sp|A0JU87|RSMA_ARTS2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116609883|gb|ABK02607.1| dimethyladenosine transferase [Arthrobacter sp. FB24]
          Length = 295

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 18/284 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     + P K +GQNF++D N +++I  ++      TV+E+G G G+LT  LL
Sbjct: 19  ASDVRRLAEEIGVRPTKTLGQNFVIDGNTIRRIVAAADIHADETVLEVGPGLGSLTLGLL 78

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A+ V+ +E D      L     Q          ++  DA+KV          P  ++
Sbjct: 79  D-AAKSVVAVEIDPVLAAKLPGTVQQWRPGAAKDFHLVLADAMKVTELPV----EPTALV 133

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + +    +P     L ++ Q EV +R+ A   S  YG  SV   W +
Sbjct: 134 ANLPYNVAVPVVLHLL--QHFPSLRHGLVMV-QDEVADRLAAGPGSKTYGVPSVKAAWYS 190

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSL 241
                  I  +VF+P+PK+ S ++ F     P+     E +  +   AF +RRKTLR +L
Sbjct: 191 SMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPVTSATREQVFAVIDAAFAQRRKTLRAAL 250

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
               G     E  L  AG++   R E + I  F RI     D Q
Sbjct: 251 AGWAGSAAEAEQCLLAAGVDPTARGEVIDIAAFARIAEARQDRQ 294


>gi|332021836|gb|EGI62176.1| Putative dimethyladenosine transferase [Acromyrmex echinatior]
          Length = 266

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 25/236 (10%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKV 107
            V+EIG G GN+T  +L   A+KV+  E D +    L+     + H ++L+I+  D LK 
Sbjct: 12  VVLEIGPGTGNMTVKMLE-KAKKVVACEIDPRMIAELQKRVQGTIHQSKLQIVYGDVLKS 70

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   FF++      +AN+PY I + L+F  +S     P +    L+FQ+E  ER+ A+  
Sbjct: 71  DLP-FFDLC-----VANIPYQISSPLVFKLLSHR---PLFRCAVLMFQREFAERLVAKPG 121

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227
              Y RLS+ T    +  M+  +  + F P PKV S V+   P   P P   +    +T+
Sbjct: 122 DKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESNVVRIEPRNPPPPINYQEWDGLTR 181

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN-ILTDNQDI 282
            AF ++ KTL  + K         Q  + T L  +N  I   C + N I++DN DI
Sbjct: 182 IAFVRKNKTLSAAFK---------QTTVVTMLE-KNYKIH--CSLNNKIVSDNFDI 225


>gi|308183524|ref|YP_003927651.1| dimethyladenosine transferase [Helicobacter pylori PeCan4]
 gi|308065709|gb|ADO07601.1| dimethyladenosine transferase [Helicobacter pylori PeCan4]
          Length = 271

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +  ++    LK  + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  NLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMVQKEVALKFCAKDSQ---NALSVLVHAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKESLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|313228791|emb|CBY17942.1| unnamed protein product [Oikopleura dioica]
          Length = 318

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 12/193 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  +++ + E +G L   T++EIG G GN+T  LL    +KVI +E D++    
Sbjct: 38  GQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVAE 96

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           ++      P  ++L II  DALK +   FF++     ++ANLPY I + + F  +     
Sbjct: 97  VQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLL---LH 147

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P +    L+FQKE  +R+ AQ     Y RLSV      +   +  +  + F P PKV S
Sbjct: 148 RPMFRVAVLMFQKEFADRLVAQPGDKIYSRLSVAVQSLARVDRILKVGKNNFKPPPKVES 207

Query: 204 TVIHFIPHLNPIP 216
           TV+   P   P+P
Sbjct: 208 TVVRIEPRRPPLP 220


>gi|147791996|emb|CAN77505.1| hypothetical protein VITISV_017803 [Vitis vinifera]
          Length = 350

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 14/226 (6%)

Query: 16  HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           HY+  +   K  GQ+ L +  ++  I E SG      ++EIG G GNLT+ LL  G + V
Sbjct: 20  HYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KSV 78

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I +E D +    L+      P  NRLE+IQ D L+ D   +F+I      +AN+PY I +
Sbjct: 79  IAVEVDPRMVLELQRRFQGTPLSNRLEVIQGDVLRCDLP-YFDI-----CVANIPYQISS 132

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L F  ++     P +    ++FQ+E   R+ AQ     Y RLSV T    + + +  + 
Sbjct: 133 PLTFKLLA---HRPVFRCAVIMFQREFAMRLVAQPGDNLYCRLSVNTQLLARVSHLLKVG 189

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
            + F P PKV S+V+   P     P   +    + +  F ++ KTL
Sbjct: 190 KNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTL 235


>gi|124360236|gb|ABN08249.1| SAM (and some other nucleotide) binding motif [Medicago truncatula]
 gi|124360864|gb|ABN08836.1| SAM (and some other nucleotide) binding motif [Medicago truncatula]
          Length = 349

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 24/276 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQN++L+ +I +++   +G  +G  V+EIG G G+LT  L+  GA  V+ +EKD+
Sbjct: 77  PKKSLGQNYMLNSDINEQLVGVAGVEEGDVVLEIGPGTGSLTNTLINSGAF-VLAVEKDK 135

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSPIR---IIANLPYNI 129
               ++ +  S    +L+++ +D +K               +I S  R   ++AN+P+ I
Sbjct: 136 HMAALVSERFSS-TGKLKVLNEDIVKCHVRSHISSLVGSTEDIDSDTRKAKVVANIPFYI 194

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMF 188
            T ++   +        +  + LL Q+E   R +     +P Y  +++   + +     F
Sbjct: 195 STDVIKLLLPMGD---IFSEVVLLLQEETALRWVEPSLRTPEYRPINIFVNFYSDPEYKF 251

Query: 189 DISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            ++   FFP P V + V+ F    P   P     +S   +   AF ++RK +R+SL+ + 
Sbjct: 252 KVARTNFFPQPNVDAAVVSFKLKQPSEYPQVSSNKSFFSMVNSAFNEKRKMIRKSLQHIC 311

Query: 246 G----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                E  L   G+ +  R E L+++DF ++ N +T
Sbjct: 312 TSLEIEEALESIGLLSTSRPEELTLDDFVKLHNSIT 347


>gi|183984448|ref|YP_001852739.1| dimethyladenosine transferase KsgA [Mycobacterium marinum M]
 gi|183177774|gb|ACC42884.1| dimethyladenosine transferase KsgA [Mycobacterium marinum M]
          Length = 274

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 122/260 (46%), Gaps = 24/260 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           ++K+   SG      V+E+G G G+LT  LL  GA  V  +E D      L    ++H +
Sbjct: 1   MRKVVTVSGITRSDQVLEVGPGLGSLTLALLERGA-AVTAVEIDPVLAARLPQTVAEHSD 59

Query: 96  ----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               RL ++  D L +  +   +   P  ++ANLPYN+    L + ++     P    +T
Sbjct: 60  SEIGRLTVVHHDILTLRRQDVAD--QPTAVVANLPYNVAVPALLHLLAEF---PSIRVVT 114

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           ++ Q EV ER+ A+     YG  SV  G+  +      +SP VF+P P+V S ++    +
Sbjct: 115 VMVQAEVAERLAAEPGGKEYGVPSVKVGFYGRVRRCGMVSPTVFWPIPRVYSGLVRIDRY 174

Query: 212 -LNPIPCCLESLKKITQE----AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRA 261
              P P   E+ ++   E    AF +RRKT R +     G      N L  A I+   R 
Sbjct: 175 ETTPWPTD-ENFRRQVFELVDIAFAQRRKTSRNAFLEWAGSGNESANRLLAASIDPARRG 233

Query: 262 ENLSIEDFCRITNILTDNQD 281
           E LSIEDF R   +LT + D
Sbjct: 234 ETLSIEDFVR---LLTRSAD 250


>gi|86605619|ref|YP_474382.1| dimethyladenosine transferase [Synechococcus sp. JA-3-3Ab]
 gi|119365853|sp|Q2JVW2|RSMA_SYNJA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|86554161|gb|ABC99119.1| dimethyladenosine transferase [Synechococcus sp. JA-3-3Ab]
          Length = 279

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 125/272 (45%), Gaps = 23/272 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           P+K  GQ++L D  + + I  ++       D   V+EIG G G LTQ LL  G   V+ +
Sbjct: 4   PRKRFGQHWLKDPAVHEAIVRAAQLPPPQRDPAWVLEIGPGTGQLTQRLLAQGV-HVVAV 62

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+    +L+   +  P R  +++ D     F +      P  ++AN+PYN+   +L  
Sbjct: 63  EIDRDLCRLLQKRFADQP-RFHLVEGD-----FLRLPLPPQPRLLVANIPYNLTGPILEK 116

Query: 137 WISADTWPPF-WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            + +   P   +E + L+ QKE+ ER+ A   S  YG LSV   +  +  ++  + P  F
Sbjct: 117 VLGSPAQPVRQFERIVLMVQKELAERLQAGPGSKAYGALSVRVRYLAECELICRVPPSAF 176

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG-------E 247
            P P+V S V+   P   P P        ++  + F  RRK L   +  LGG        
Sbjct: 177 RPPPQVESAVVRLTPRPAPTPARDPRWFSQLVCQGFSARRKQL---VNALGGLVDRQTVA 233

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             L Q  +    RAE L + D+  ++++L + 
Sbjct: 234 AALAQLRLSPTARAEELDLPDWLALSDLLLEQ 265


>gi|282896422|ref|ZP_06304443.1| 16S rRNA dimethylase [Raphidiopsis brookii D9]
 gi|281198710|gb|EFA73590.1| 16S rRNA dimethylase [Raphidiopsis brookii D9]
          Length = 281

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 129/270 (47%), Gaps = 19/270 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L  I +++       ++EIG G G LT+ LL L    ++ +E D+
Sbjct: 4   PQKQFAQHWLRSEKALNSIVKAAECQANDRILEIGPGTGILTKRLLPL-VDSLLAVEIDR 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKV----DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
               +L        N L ++Q D L +        F       +++AN+PYNI   ++  
Sbjct: 63  DLCELLAKKLGARENFL-LLQGDFLTLGIASQLTAFPKFQRQNKVVANIPYNITGPIIEK 121

Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            +   AD  P  ++S+ LL QKEV +R+ A+  S ++G LSV   +  +   +  +    
Sbjct: 122 LLGTIADPNPQPFDSIVLLIQKEVAQRLYAKPGSRNFGALSVRVQYLAECEFICTVPASA 181

Query: 195 FFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLK----RLGG 246
           F+P PKV S V+  +P    I    P  LE++ K+    FG +RK LR +L+    R   
Sbjct: 182 FYPPPKVDSVVVRLLPRNMEIGANDPKLLENMLKL---GFGCKRKMLRNNLQSVIDRESL 238

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             LL    I  ++RAE +S+  +  + N L
Sbjct: 239 TKLLEGLNINPHVRAEEISVSQWVSLVNSL 268


>gi|124087844|ref|XP_001346899.1| Ribosomal RNA adenine dimethylase [Paramecium tetraurelia strain
           d4-2]
 gi|145474821|ref|XP_001423433.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057288|emb|CAH03272.1| Ribosomal RNA adenine dimethylase, putative [Paramecium
           tetraurelia]
 gi|124390493|emb|CAK56035.1| unnamed protein product [Paramecium tetraurelia]
          Length = 353

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 109/209 (52%), Gaps = 13/209 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K  +S   ++  K  GQ+ L++  IL+ I + S       V+EIG G GNLT++LL   
Sbjct: 1   MKNTVSKSNMVFNKSFGQHILINQQILQMIVDKSAIRPTDIVLEIGPGTGNLTELLLQ-R 59

Query: 70  ARKVIVIEKDQQFFPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           A++VI +E D +    L  +   SQ+ ++ ++IQ D L  +   FF++      +AN+PY
Sbjct: 60  AKQVICVEIDPRMVIELTKRFKYSQYSDKFKLIQGDFLTAELP-FFDLC-----VANVPY 113

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + L+F  ++     P W    L+FQ+E   R+ A+  +  Y RLS      ++   +
Sbjct: 114 QISSPLVFKLLAQR---PLWRCAVLMFQQEFAFRLVAKPGNELYCRLSANVQMLSRVDHL 170

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
             +  + F P PKV S+V+   P  NPIP
Sbjct: 171 MKVGKNNFKPPPKVESSVVRIEPK-NPIP 198


>gi|331703024|ref|YP_004399711.1| Dimethyladenosine transferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328801579|emb|CBW53732.1| Dimethyladenosine transferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 266

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 131/270 (48%), Gaps = 25/270 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KKY GQNF+ DLN++ +I +         ++EIG G G LT+ L+     KV+VIE DQ
Sbjct: 3   AKKYYGQNFISDLNLINRIVDVLDQNKDQLIVEIGPGKGALTKELVK-RFDKVVVIEIDQ 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNIGTRLLFNW 137
               ILK     H N LEIIQ D L++D ++    +N  + I II+N PY I + +LF  
Sbjct: 62  DMVEILK-TKFNHSN-LEIIQADVLELDLKQLISKYNYKN-ISIISNTPYYITSEILFKT 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +              + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+P
Sbjct: 119 LQI---SDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYP 175

Query: 198 SPKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGG 246
            PKV S +I       +   +N     ++ ++ +    F  +RKT           +   
Sbjct: 176 IPKVDSAIISLTFNDIYKKQVNNDKKFIDFVRLL----FNNKRKTILNNLNNIIQNKNKA 231

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              L+   I +NLR E L I+ + ++ N++
Sbjct: 232 LEYLNTLNINSNLRPEQLDIDQYIKLFNLI 261


>gi|145545245|ref|XP_001458307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426126|emb|CAK90910.1| unnamed protein product [Paramecium tetraurelia]
          Length = 353

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 109/209 (52%), Gaps = 13/209 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K  +S   ++  K  GQ+ L++  IL+ I + S       V+EIG G GNLT++LL   
Sbjct: 1   MKNTVSKSNMVFNKSFGQHILINQQILQMIVDKSAIRPTDIVLEIGPGTGNLTELLLQ-R 59

Query: 70  ARKVIVIEKDQQFFPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           A++VI +E D +    L  +   SQ+ ++ ++IQ D L  +   FF++      +AN+PY
Sbjct: 60  AKQVICVEIDPRMVIELTKRFKYSQYSDKFKLIQGDFLTAELP-FFDLC-----VANVPY 113

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + L+F  ++     P W    L+FQ+E   R+ A+  +  Y RLS      ++   +
Sbjct: 114 QISSPLVFKLLAQR---PLWRCAVLMFQQEFAFRLVAKPGNELYCRLSANVQMLSRVDHL 170

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
             +  + F P PKV S+V+   P  NPIP
Sbjct: 171 MKVGKNNFKPPPKVESSVVRIEPK-NPIP 198


>gi|256384236|gb|ACU78806.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385069|gb|ACU79638.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455258|gb|ADH21493.1| dimethyladenosine transferase [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 266

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 129/269 (47%), Gaps = 23/269 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KKY GQNF+ DLN++ KI +         +IEIG G G LT+ L+     KV+VIE D+
Sbjct: 3   AKKYYGQNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGALTKELVK-RFDKVVVIEIDK 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFNWI 138
               ILK     H N LEIIQ D L++D ++  +      I II+N PY I + +LF  +
Sbjct: 62  DMVEILK-TKFNHSN-LEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFKTL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                         + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+P 
Sbjct: 120 QI---SDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPI 176

Query: 199 PKVTSTVIH------FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGE 247
           PKV S +I       +   +N     ++ ++ +    F  +RKT           +    
Sbjct: 177 PKVDSAIISLTFNDIYKKQVNNDKKFIDFVRLL----FNNKRKTILNNLNNIIQNKNKAL 232

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             L+   I +NLR E L I+ + ++ N++
Sbjct: 233 EYLNTLNISSNLRPEQLDIDQYIKLFNLI 261


>gi|78499686|gb|ABB45840.1| hypothetical protein [Eutrema halophilum]
          Length = 310

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 102/217 (47%), Gaps = 12/217 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL  I   S      TV+EIG G GNLT  LL   A+ V+ +E D++ 
Sbjct: 49  KSKGQHLLTNNRILDAIVRISDVRPTDTVLEIGPGTGNLTMKLLE-AAQNVVAVEIDKRM 107

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL    + H   ++L IIQ D LK DF +F        ++AN+PYNI + L+   +  
Sbjct: 108 VEILGKRVADHGLEDKLTIIQKDVLKTDFPQF------DLVVANIPYNISSPLVAKLVYG 161

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 + S TLL QKE   R+ A      + RL+V          + D+S   F P PK
Sbjct: 162 SN---AFRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVQFVMDVSKREFVPPPK 218

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           V S+++   P        ++     T+  FG + KTL
Sbjct: 219 VDSSLVIIRPKEVKPDVDVQEWLAFTRTCFGNKNKTL 255


>gi|302534918|ref|ZP_07287260.1| LOW QUALITY PROTEIN: dimethyladenosine transferase [Streptomyces
           sp. C]
 gi|302443813|gb|EFL15629.1| LOW QUALITY PROTEIN: dimethyladenosine transferase [Streptomyces
           sp. C]
          Length = 285

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 13/235 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL   
Sbjct: 25  IRELAAVLGVRPTKQKGQNFVIDANTVRRIVRTADVRPDDVVVEVGPGLGSLTLALLE-A 83

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V  +E D      L   I ++ P   +R  ++  DA+ V         +P  ++ANL
Sbjct: 84  ADRVTAVEIDDILAAALPATIEARMPHKKDRFALVHSDAMLV---TELPGPAPTALVANL 140

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L   +  D +P    +L ++ Q EV +R+ A+  +  YG  SV   W     
Sbjct: 141 PYNVAVPVLLTML--DRFPSIERTL-VMVQSEVADRLAARPGNKVYGVPSVKAAWYADVK 197

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLR 238
               I  +VF+P+P V S ++  +    P+       +   +   AF +RRK LR
Sbjct: 198 RAGAIGRNVFWPAPNVDSGLVSLVRRAEPVKTTASKAEVFAVVDAAFAQRRKGLR 252


>gi|282899539|ref|ZP_06307503.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505]
 gi|281195418|gb|EFA70351.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505]
          Length = 281

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 129/270 (47%), Gaps = 19/270 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L  I +++       ++EIG G G LT+ LL L    ++ +E D+
Sbjct: 4   PQKQFAQHWLRSEKALNSIVKAAECQVNDRILEIGPGTGILTKRLLPL-VDSLLAVEIDR 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKV----DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
               +L        N L ++Q D L +        F       +++AN+PYNI   ++  
Sbjct: 63  DLCELLAKKLGARENFL-LLQGDFLTLGIASQLTAFPKFQRQNKVVANIPYNITGPIIEK 121

Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            +   AD  P  ++S+ LL QKEV +R+ A+  S ++G LSV   +  +   +  +    
Sbjct: 122 LLGTIADPNPQPFDSIVLLIQKEVAQRLYAKPGSRNFGALSVRVQYLAECEFICTVPASA 181

Query: 195 FFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLK----RLGG 246
           F+P PKV S V+  +P    I    P  LE++ K+    FG +RK LR +L+    R   
Sbjct: 182 FYPPPKVDSAVVRLLPRNMEIGANDPKLLENMVKL---GFGCKRKMLRNNLQSVIDRESL 238

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             LL    I  ++RAE +S+  +  + N L
Sbjct: 239 TKLLEGLNINPHVRAEEISVSQWVSLVNSL 268


>gi|307638086|gb|ADN80536.1| Dimethyl adenosine transferase [Helicobacter pylori 908]
 gi|325996687|gb|ADZ52092.1| Dimethyladenosine transferase [Helicobacter pylori 2018]
 gi|325998279|gb|ADZ50487.1| Dimethyladenosine transferase [Helicobacter pylori 2017]
          Length = 271

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVGALSPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  HLCEKMRARLK--AEKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           PSPKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PSPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|308185189|ref|YP_003929322.1| dimethyladenosine transferase [Helicobacter pylori SJM180]
 gi|308061109|gb|ADO03005.1| dimethyladenosine transferase [Helicobacter pylori SJM180]
          Length = 279

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 10  VVAKKSLGQHFLTDESFLDRIINALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTYEIDS 69

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 70  SLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 121

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 122 ALKD----PKCRGLLVMTQKEVALKFCAKGSQ---NALSVLAHTIGDATLLFDVPPSAFS 174

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           PSPKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 175 PSPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 234

Query: 241 LKR 243
           LK+
Sbjct: 235 LKK 237


>gi|15612387|ref|NP_224040.1| dimethyladenosine transferase [Helicobacter pylori J99]
 gi|27151619|sp|Q9ZJI7|RSMA_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|4155935|gb|AAD06902.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacter pylori J99]
          Length = 271

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 118/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL+D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLMDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +  ++    L+  + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  NLCEKMRARLR--AEKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|294784979|ref|ZP_06750267.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_27]
 gi|294486693|gb|EFG34055.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_27]
          Length = 264

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 128/266 (48%), Gaps = 21/266 (7%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL +I E S   D   ++EIG G G LT +L+    +KV  +E D+
Sbjct: 6   KKKYGQNFLNNKDEILNRIIEVSNINDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   S   N   +I  D L++D  ++ N  +  +++AN+PY I + ++   I  
Sbjct: 65  DLENTLRKKFSSKEN-YTLIMGDVLEIDLRRYINQGT--KVVANIPYYITSPIINKIIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K+    G L++   +  +A  +F I    F P P 
Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEAEYLFTIPREFFNPIPN 177

Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250
           V S  I         + N I   L    K  + AF  +RK +  +L  LG      + +L
Sbjct: 178 VDSAFISIKFYKDDRYKNKISESL--FFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEIL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           +Q  +  N RAEN+SI+ F  + NI 
Sbjct: 236 NQIEVPENERAENISIDKFIELINIF 261


>gi|302820073|ref|XP_002991705.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii]
 gi|300140554|gb|EFJ07276.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii]
          Length = 344

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 126/273 (46%), Gaps = 20/273 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PK+++GQN++++ NI  +I  ++    G  V+EIG G G LT  LL  GA  VI +EKD 
Sbjct: 63  PKRWLGQNYMVNSNINDEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAY-VIAVEKDP 121

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSP---IRIIANLPYNIGTR 132
               ++ +    +P    + QDD LK       +     I SP   +++++NLP+NI T 
Sbjct: 122 DMVSLVSERFKDNPRVKVLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVSNLPFNITTD 181

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           ++   +        + ++ LL Q E   R I        Y  +S+   + ++    F + 
Sbjct: 182 VVKKLLPMGD---LFSNVVLLLQDEAAARFIDDSPKGDEYRPISIFIRFFSEMEYKFKVD 238

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGG-- 246
              FFP P V   V+ F    +     ++S+K+   +   AF  +RK LR SL+ L    
Sbjct: 239 RLNFFPPPPVNGAVVSFSLKDSSQYPEVKSVKRFFTLVNSAFTGKRKMLRTSLRHLYSSS 298

Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
             EN L   G+    R   LS   F ++ N L 
Sbjct: 299 EVENALCSIGVIETARPHQLSFSQFVKLHNTLA 331


>gi|163846476|ref|YP_001634520.1| dimethyladenosine transferase [Chloroflexus aurantiacus J-10-fl]
 gi|222524255|ref|YP_002568726.1| dimethyladenosine transferase [Chloroflexus sp. Y-400-fl]
 gi|163667765|gb|ABY34131.1| dimethyladenosine transferase [Chloroflexus aurantiacus J-10-fl]
 gi|222448134|gb|ACM52400.1| dimethyladenosine transferase [Chloroflexus sp. Y-400-fl]
          Length = 290

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 27/288 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++  L    + P + MGQNFLLD  +L  I + +       V+E+G G G LT  L+   
Sbjct: 10  IRAALRALNLRPTRGMGQNFLLDGQVLATIVDEAKLNASDAVVEVGPGLGVLTWELVQRA 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLP 126
            R VI +E D++    L     +  + L +IQ D LKV   D       + P +++AN+P
Sbjct: 70  GR-VICVELDRRLADRLA-AEFRDQSHLYLIQGDVLKVAPSDLLARAAATPPYKLVANIP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I   LL +++ A T P   +   LL Q EV ERI A      Y  L+       + T+
Sbjct: 128 YAITAPLLRHFLEATTPP---DLSILLVQWEVAERICAGPGD--YSVLAHAVQLYAEPTI 182

Query: 187 MFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           +  +    FFP+P V S ++  +  P L      + +L ++ +  F   RK L  +L   
Sbjct: 183 VARVPAASFFPAPAVDSAILRLVRRPQLAVAVDDVNALFRLIKAGFLHARKQLGNALP-- 240

Query: 245 GG-------------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           GG                LH AGI+   RAE +++ ++ ++  +L+++
Sbjct: 241 GGLAALGVTVSREHVVQALHAAGIDPQRRAETVTLAEWAKLLAVLSES 288


>gi|254302694|ref|ZP_04970052.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322886|gb|EDK88136.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 264

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 127/266 (47%), Gaps = 21/266 (7%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +KV  +E D+
Sbjct: 6   KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   S   N + ++  D L+VD  K+ N  +  +++AN+PY I + ++   I  
Sbjct: 65  DLENTLRKKFSSKENYI-LVMGDVLEVDLRKYINQGT--KVVANIPYYITSPIINKIIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K+    G L++   +  +   +F I    F P P 
Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGETEYLFTIPREFFNPIPN 177

Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250
           V S  I         + N I   L    K  + AF  +RK +  +L  LG      + +L
Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYIKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           +Q  +  N RAEN+S + F  + NI 
Sbjct: 236 NQIEVSENERAENISTDKFIELINIF 261


>gi|317506076|ref|ZP_07963904.1| dimethyladenosine transferase [Segniliparus rugosus ATCC BAA-974]
 gi|316255648|gb|EFV14890.1| dimethyladenosine transferase [Segniliparus rugosus ATCC BAA-974]
          Length = 296

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 139/275 (50%), Gaps = 17/275 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D   +++I  ++G     +V+EIG G G+LT  LL + 
Sbjct: 26  VRALAGQLDVRPTKRLGQNFVHDPGTIRRIVAAAGLRPEDSVLEIGPGLGSLTLGLLDV- 84

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           A  V  +E D +    L + I+ + P R   ++  DAL++D       ++P  ++ANLPY
Sbjct: 85  AHDVTAVEVDPKLAEALPRTIAERAPGRQFRLVVKDALQLDAADL--PTAPTALVANLPY 142

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+   +    ++   +P    +L ++ Q EVG+R+ A+  +   G  ++ T +  +A + 
Sbjct: 143 NVAVPVFLRALA--EFPSIRRALVMV-QLEVGQRLAAKPGAREGGVPTLKTAFYGEAELT 199

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPC---CLESLKKITQEAFGKRRKTLRQSLKR 243
             +SP VF+P P V S ++ F    + P P      +++ ++   AF  RRKTL   LK 
Sbjct: 200 NKVSPEVFWPRPNVDSALVRFTRREDSPWPTDEQTRQAVFRLIDAAFASRRKTLGAVLKP 259

Query: 244 LGG--ENL---LHQAGIETNLRAENLSIEDFCRIT 273
             G  E L   L  AG+  + R E L IE F  + 
Sbjct: 260 WAGSPEELRRRLEAAGVPGSARGEELGIEQFVALA 294


>gi|256845838|ref|ZP_05551296.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_36A2]
 gi|256719397|gb|EEU32952.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_36A2]
          Length = 264

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 129/266 (48%), Gaps = 21/266 (7%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL +I E S   D   ++EIG G G LT +L+    +KV  +E D+
Sbjct: 6   KKKYGQNFLNNKDEILNRIIEVSNINDNDEILEIGPGQGALTSLLVE-RVKKVTCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   S   N + +I  D L++D  ++ N  +  +++AN+PY I + ++   I  
Sbjct: 65  DLENTLRKKFSSKENYI-LIMGDVLEIDLRRYINQGT--KVVANIPYYITSPIINKIIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K+    G L++   +  +A  +F I    F P P 
Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGEAEYLFTILREFFNPIPN 177

Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250
           V S  I         + N I   L    K  + AF  +RK +  +L  LG      + +L
Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEIL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           +Q  +  N RAEN+SI+ F  + NI 
Sbjct: 236 NQIEVPENERAENISIDKFIELINIF 261


>gi|297626914|ref|YP_003688677.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922679|emb|CBL57256.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 289

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 120/268 (44%), Gaps = 17/268 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P K +GQNF++D N +++I   +       V+E+G G      + L   A  V  +E D 
Sbjct: 24  PTKTLGQNFVVDANTVRRIVSLADVGPEDEVLEVGPG-LGSLTLGLLASAAGVTAVEIDP 82

Query: 81  QFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                L    ++H      RL ++ DDAL+V+        +P R++ANLPYN+   +L +
Sbjct: 83  VLAAQLPLTVAEHQPDRAGRLRVVTDDALRVES---LPGPAPTRLVANLPYNVAVPVLLH 139

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +        W +  ++ Q EV +R+ A   S  YG  S    W  +A     + P VF+
Sbjct: 140 MLERFA---SWRAGLVMVQLEVADRLVATPGSRTYGVPSAKLAWYAEAHKAGTVPPSVFW 196

Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250
           P P V S ++       P      E +  +   AF +RRK LR +L R+ G        +
Sbjct: 197 PVPNVESGLVAIQRREPPATSASREQVFAVIDAAFAQRRKMLRSALARIVGSSAAASAAI 256

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTD 278
             AGI+  +R E L I  F  I   L +
Sbjct: 257 EAAGIDPTVRGEALDIAAFAAIAEQLPN 284


>gi|217032121|ref|ZP_03437621.1| hypothetical protein HPB128_16g81 [Helicobacter pylori B128]
 gi|298735609|ref|YP_003728134.1| dimethyladenosine transferase [Helicobacter pylori B8]
 gi|216946269|gb|EEC24877.1| hypothetical protein HPB128_16g81 [Helicobacter pylori B128]
 gi|298354798|emb|CBI65670.1| dimethyladenosine transferase [Helicobacter pylori B8]
          Length = 271

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +  ++    LK  + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  NLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L  +P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|108563781|ref|YP_628097.1| dimethyladenosine transferase [Helicobacter pylori HPAG1]
 gi|118600871|sp|Q1CRJ9|RSMA_HELPH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|107837554|gb|ABF85423.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter
           pylori HPAG1]
          Length = 271

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I ++   L+ + ++EIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK    + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRSKLK--VQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L  +P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKESLKEKALASLAQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|115935835|ref|XP_001176419.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 306

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 25/261 (9%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  +++ I   +      TV+E+G G GN+T  +L   A+KV+  E D +   
Sbjct: 27  IGQHILKNPLVIESIISKAALRSTDTVLEVGPGTGNMTVKMLD-KAKKVVACELDPRLVA 85

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P   +L++I  D LK D   FF++      +ANLPY I +  +F  +    
Sbjct: 86  ELQKRVQGTPFAPKLQVIVGDVLKTDLP-FFDVC-----VANLPYQISSPFVFKLL---L 136

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E  +R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 137 HRPFFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVE 196

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S+V+   P   P P   +    + + AF ++ KTL  + +  G   +L     E N R  
Sbjct: 197 SSVVRIEPRNPPPPINFQEWDGLVRIAFVRKNKTLSAAFRNKGVVEML-----EKNYRVH 251

Query: 263 NLSIEDFCRITNI-LTDNQDI 282
                  C + NI + DN D+
Sbjct: 252 -------CSVKNIAIPDNLDM 265


>gi|300681336|emb|CAZ96067.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570]
          Length = 319

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 126/269 (46%), Gaps = 22/269 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           G N++L+  + +++  ++G  +G  V+EIG G G+LT  LL  GA  V  +EKD+    +
Sbjct: 54  GANYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGA-TVFAVEKDKHMATL 112

Query: 86  LKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPIRIIANLPYNIGTRLLFN 136
           +KD       +L++I++D  K            EK+       ++++NLP+N+ T ++  
Sbjct: 113 IKDRFGS-TEQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVSTEVVKL 171

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            +        +  + ++ Q E   R+       P Y  ++V   + +K    F +    F
Sbjct: 172 LLPMGDV---FSVVVIMLQDETAVRLADTSIQIPEYRPINVFVNFYSKPEYKFRVDRDNF 228

Query: 196 FPSPKVTSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGG----EN 248
           FP PKV   VI F + +    P     +S   +   AF  +RK LR+SL+ L      E 
Sbjct: 229 FPQPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRKMLRKSLQHLCSSSEIEA 288

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
            L   G+    R  +L ++DF R+ N LT
Sbjct: 289 ALDNIGLPVTARPSDLILDDFVRLHNHLT 317


>gi|291319987|ref|YP_003515245.1| dimethyladenosine transferase(S adenosylmethionine 6 N', N'
           adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High levelkasugamycin resistance protein
           ksgA) (Kasugamycindimethyltransferase) [Mycoplasma
           agalactiae]
 gi|290752316|emb|CBH40287.1| Dimethyladenosine transferase(S adenosylmethionine 6 N', N'
           adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High levelkasugamycin resistance protein
           ksgA) (Kasugamycindimethyltransferase) [Mycoplasma
           agalactiae]
          Length = 270

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 14/250 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL   +++KKI +   S +G  +IEIG G G LT+ L+     K++  E D  
Sbjct: 19  KKKFGQNFLHSDSVIKKIVDII-SPEGKQIIEIGPGTGALTKHLVN-KCTKLVAFEIDPD 76

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +  +     ++ DD L  + +++    +   ++ N+PY I + ++F  I   
Sbjct: 77  MIKFLNQQNYFNSENNMLVHDDFLNANLDQY----AYFEVVGNIPYYITSEIIFKLIENR 132

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                ++  TLL QKEV +RI A  NS  Y +LS+   +  K      +S + F P PKV
Sbjct: 133 F---LFKRATLLVQKEVADRIVAMPNSYEYSKLSITCQYVAKVKKELFVSKNNFSPVPKV 189

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIET 257
            S ++ F  + +      E LK   +  F  RRK L  SLK++  +  +  A     I  
Sbjct: 190 DSAIVTFDFYQDKND-NYEQLKDFFKLCFSARRKKLIWSLKQVYSQEKILNAYSVLNISE 248

Query: 258 NLRAENLSIE 267
           N+R + L +E
Sbjct: 249 NIRIQQLDLE 258


>gi|154341407|ref|XP_001566655.1| ribosomal RNA adenine dimethylase family protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134063980|emb|CAM40171.1| putative ribosomal RNA adenine dimethylase family protein
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 366

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 13/223 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           S   I+  K  GQ+ L +  ++  I E S       V+EIG G GNLT+ LL   A+KVI
Sbjct: 64  SQSGIVFNKGFGQHILKNPLVIAAIVEKSAIKPTDVVVEIGPGTGNLTEKLLQT-AKKVI 122

Query: 75  VIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
             E D +    L       P  ++L+II+ + L+ DF  F       + +AN+PY I + 
Sbjct: 123 AFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVANVPYAISSA 176

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV +    + + +  IS 
Sbjct: 177 LVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARCSHLMKISR 232

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235
           + F P PKV S+VI   P   P     E    + +  F ++ K
Sbjct: 233 NSFNPPPKVESSVIRLDPKCPPPDVDFEEWDGLVKMLFNRKNK 275


>gi|318041295|ref|ZP_07973251.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Synechococcus sp. CB0101]
          Length = 270

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 18/253 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D  +L +I  ++      TV+E+G G G LT+ LL   A  V  +E D+ 
Sbjct: 9   RKRFGQHWLKDERVLDQILAAAELSAADTVLEVGPGRGALTERLLASPAAAVRAVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++  S  P R ++   D L V   +   +      +AN+PYNI   LL   +   
Sbjct: 69  LVEGLQERFSGDP-RFDLTPGDVLAVPLPEAGIV------VANIPYNITGPLLERLVGRL 121

Query: 142 TWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             P    +  L LL Q+EVGERI A+  S  Y  LSV      + + +  + P  F P P
Sbjct: 122 DRPVAQPYRRLVLLMQQEVGERIRARPGSSAYSALSVRMQLLARCSTVCLVPPRCFQPPP 181

Query: 200 KVTSTVIHFIPHLNP----IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---- 251
           KV S V+   P L P     P    +++ + +  F  RRK LR +L  L   + L     
Sbjct: 182 KVMSEVVAIDP-LPPDQQLDPALARTVETLLRRCFAARRKMLRNTLAGLQPPDQLQALTA 240

Query: 252 QAGIETNLRAENL 264
           +AGI    R + +
Sbjct: 241 EAGIGLEQRPQEV 253


>gi|115757168|ref|XP_779962.2| PREDICTED: similar to putative dimethyladenosine transferase
           [Strongylocentrotus purpuratus]
          Length = 292

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 25/261 (9%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  +++ I   +      TV+E+G G GN+T  +L   A+KV+  E D +   
Sbjct: 13  IGQHILKNPLVIESIISKAALRSTDTVLEVGPGTGNMTVKMLD-KAKKVVACELDPRLVA 71

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P   +L++I  D LK D   FF++      +ANLPY I +  +F  +    
Sbjct: 72  ELQKRVQGTPFAPKLQVIVGDVLKTDLP-FFDVC-----VANLPYQISSPFVFKLL---L 122

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E  +R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 123 HRPFFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVE 182

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S+V+   P   P P   +    + + AF ++ KTL  + +  G   +L     E N R  
Sbjct: 183 SSVVRIEPRNPPPPINFQEWDGLVRIAFVRKNKTLSAAFRNKGVVEML-----EKNYRVH 237

Query: 263 NLSIEDFCRITNI-LTDNQDI 282
                  C + NI + DN D+
Sbjct: 238 -------CSVKNIAIPDNLDM 251


>gi|298706896|emb|CBJ25860.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 310

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 104/193 (53%), Gaps = 12/193 (6%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDIS-SQHPNRLEIIQDDALKVD 108
           V+EIG G GNLT  LL   A++VI +E D +    ++K +  ++    L+IIQ D LKV 
Sbjct: 15  VLEIGPGTGNLTVRLLE-RAKRVIAVELDTRMVREVMKRVEGTEWEKSLQIIQGDVLKVP 73

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
              FF++     ++AN+PYNI + LLF  ++     P +    ++FQ+E  +R+TA+ N+
Sbjct: 74  L-PFFDV-----LVANVPYNISSPLLFKLLAHR---PMFRCAVIMFQEEFAQRLTARPNT 124

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228
             + RLSV T    K   +F ++ + F P PKV S V+       P P        + + 
Sbjct: 125 DMWCRLSVNTQLLAKVDQLFKVNRNNFRPPPKVDSRVVRIELRNPPPPVNFTEWDGMIRV 184

Query: 229 AFGKRRKTLRQSL 241
            F ++ KTLR +L
Sbjct: 185 IFNRKHKTLRATL 197


>gi|148377319|ref|YP_001256195.1| dimethyladenosine transferase(S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA)dimethyltransferase) (16S rRNA
           dimethylase) (high levelkasugamycin resistance protein
           ksgA) (kasugamycindimethyltransferase) [Mycoplasma
           agalactiae PG2]
 gi|148291365|emb|CAL58748.1| Dimethyladenosine transferase(S adenosylmethionine 6 N', N'
           adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High levelkasugamycin resistance protein
           ksgA) (Kasugamycindimethyltransferase) [Mycoplasma
           agalactiae PG2]
          Length = 270

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 119/250 (47%), Gaps = 14/250 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL   +++KKI +   S +G  +IEIG G G LT+ L+     K++  E D  
Sbjct: 19  KKKFGQNFLHSDSVIKKIVDII-SPEGKQIIEIGPGTGALTKHLVN-KCSKLVAFEIDPD 76

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +  +     ++ DD L  + +++        ++ N+PY I + ++F  I   
Sbjct: 77  MIEFLNQQNYFNSENNMLVHDDFLNANLDQYV----YFEVVGNIPYYITSEIIFKLIENR 132

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                ++  TLL QKEV +RI A  NS  Y +LS+   +  K      +S + F P PKV
Sbjct: 133 F---LFKRATLLVQKEVADRIVAAPNSYEYSKLSITCQYVAKVKKELFVSKNNFSPIPKV 189

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIET 257
            S ++ F  + N      E LK   +  F  RRK L  SLK++  +  +  A     I  
Sbjct: 190 DSAIVTFDFYQNHND-NYEQLKDFFKLCFSARRKKLIWSLKQVYSQEKILNAYSLLNISE 248

Query: 258 NLRAENLSIE 267
           N+R + L +E
Sbjct: 249 NIRIQQLDLE 258


>gi|261840104|gb|ACX99869.1| dimethyladenosine transferase [Helicobacter pylori 52]
          Length = 271

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 114/241 (47%), Gaps = 29/241 (12%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
                   K  + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N +
Sbjct: 62  SLCEKTRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLNAL 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F P 
Sbjct: 116 KD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGSATLLFDVPPSAFSPP 168

Query: 199 PKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQSLK 242
           PKV S+V   I           L   P   E+L+K         +  F   RKTL  +LK
Sbjct: 169 PKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNNLK 228

Query: 243 R 243
           +
Sbjct: 229 K 229


>gi|254779942|ref|YP_003058049.1| dimethyladenosine transferase [Helicobacter pylori B38]
 gi|254001855|emb|CAX30105.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Helicobacter
           pylori B38]
          Length = 271

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +  ++    LK  + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  NLCEKMRSKLK--AQKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|304315447|ref|YP_003850594.1| dimethyladenosine transferase [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588906|gb|ADL59281.1| predicted dimethyladenosine transferase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 273

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 117/246 (47%), Gaps = 15/246 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M       + +L  Y +  ++ +GQN+L+D    ++I           V+EIGAG G LT
Sbjct: 1   MTGLYRETRDVLRKYGVRLRRSLGQNYLVDDGKRQRILGYGNLGPDDHVLEIGAGIGTLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             +  L A  V  IE D     IL D      + ++II  DALKVDF  F       +++
Sbjct: 61  LPMAEL-AGHVTAIESDPFIAGILAD--RIKGDNVDIIVGDALKVDFPAFN------KVV 111

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           +NLPY I + + F  +  +     +E   L++QKE   R+ A+  +  Y RLSV+  +  
Sbjct: 112 SNLPYQISSPVTFRLLRHE-----FELGVLMYQKEFAARMVAEPGTRDYSRLSVMLHFLA 166

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL 241
           +  ++  + P  FFP P+V S V+   P    +P   E + + + Q    K  K+LR+S 
Sbjct: 167 EVQIVDYLKPGCFFPRPRVDSAVVTVRPTGFSLPALFEDVCRALFQHRKKKTSKSLRESF 226

Query: 242 KRLGGE 247
             +  +
Sbjct: 227 HEIKAD 232


>gi|188528194|ref|YP_001910881.1| dimethyladenosine transferase [Helicobacter pylori Shi470]
 gi|226732587|sp|B2UVG9|RSMA_HELPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|188144434|gb|ACD48851.1| dimethyladenosine transferase [Helicobacter pylori Shi470]
 gi|308064183|gb|ADO06070.1| dimethyladenosine transferase [Helicobacter pylori Sat464]
          Length = 271

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I ++   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDHYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRSKLK--AQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|302818711|ref|XP_002991028.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii]
 gi|300141122|gb|EFJ07836.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii]
          Length = 344

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 125/273 (45%), Gaps = 20/273 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PK+++GQN++++ NI  +I  ++    G  V+EIG G G LT  LL  GA  VI +EKD 
Sbjct: 63  PKRWLGQNYMVNSNINDEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAY-VIAVEKDP 121

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSP---IRIIANLPYNIGTR 132
               ++ +    +P    + QDD LK       +     I SP   +++++NLP+NI T 
Sbjct: 122 DMVSLVSERFKDNPRVKVLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVSNLPFNITTD 181

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           ++   +        + ++ LL Q E   R I        Y  +S+   + ++    F + 
Sbjct: 182 VVKKLLPMGD---LFSNVVLLLQDEAAARFIDDSPKGDEYRPISIFIRFFSEMEYKFKVD 238

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGG-- 246
              FFP P V   V+ F    +     ++S+K+   +   AF  +RK LR SL+ L    
Sbjct: 239 RLNFFPPPPVNGAVVSFSLKDSSQYPEVKSVKRFFTLVNSAFTGKRKMLRTSLRHLYSSS 298

Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
             EN L   G+    R   LS   F  + N L 
Sbjct: 299 EVENALCSIGVVETARPHQLSFSQFVNLHNTLA 331


>gi|119871918|ref|YP_929925.1| dimethyladenosine transferase [Pyrobaculum islandicum DSM 4184]
 gi|226732612|sp|A1RRK0|RSMA_PYRIL RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|119673326|gb|ABL87582.1| dimethyladenosine transferase [Pyrobaculum islandicum DSM 4184]
          Length = 235

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+   Q+FL D ++ + I E   S  G+ +IE+G G G LT + L   ++ +  IE D  
Sbjct: 3   KRRWSQHFLRDTSVAQFITELVPS--GLDIIEVGPGRGALT-LPLAEKSKTIYAIEIDPT 59

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEK--FFNISSPIRIIANLPYNIGTRLLFNWIS 139
               LK    Q P  + +I  DAL++++ +  FF        ++N+PY+I + LL     
Sbjct: 60  LAEFLK---RQAPPNVVVIVGDALEIEWPRADFF--------VSNIPYSITSPLLLKLAK 108

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                 +     +  QKEV ER+ A   + +YGRL+V         ++  + PHVF P P
Sbjct: 109 ------YRLPAVVTIQKEVAERLVAAPGTENYGRLTVAIRCHYDVEVLRILPPHVFSPPP 162

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE- 256
           KV S V+   P     PC    E+ ++ T   F  RRKTLR+ LK    E  ++Q  +E 
Sbjct: 163 KVYSAVVRLTPRR---PCVEDFENFQRFTARLFSTRRKTLRR-LKLGETEKRVYQLTLEE 218

Query: 257 -TNLRAENLSIEDFCR 271
              L  ++    + CR
Sbjct: 219 IVELYKKHFDTTETCR 234


>gi|195953427|ref|YP_002121717.1| ribosomal RNA adenine methylase transferase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|254807870|sp|B4U9C8|RSMA_HYDS0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|195933039|gb|ACG57739.1| ribosomal RNA adenine methylase transferase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 252

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 117/257 (45%), Gaps = 21/257 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK  GQNFL   NI   I E     +  TVIEIG G G LT+ L     +++I++E D+
Sbjct: 4   PKKTFGQNFLKSKNIAHSIVELLDVKEDDTVIEIGPGLGALTEFLYQKPKKELILVELDK 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             F +L+    ++ N   ++ +DA  VD   + N    ++II NLPYN+   +L N I+ 
Sbjct: 64  DIFGLLE---KKYKNA-TLLNEDASLVDLSSYKN----LKIIGNLPYNMYASILINMINQ 115

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           +        +  + QKEVGER+    +S     L             F +    F P PK
Sbjct: 116 EK---HISKMVFMLQKEVGERLIT--DSKDKSWLWAYANTYFNIHYAFSVPGRFFEPVPK 170

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           VTS V+ F    +      ++     ++ F  RRK L+  L  +  +  L         R
Sbjct: 171 VTSCVLVFDKKEDTPSFEKQNYMDFLKKMFSNRRKMLKHKLNNIEDKYALK--------R 222

Query: 261 AENLSIEDFCRITNILT 277
            E LS+ED   I N L+
Sbjct: 223 VEELSLEDIKYIYNTLS 239


>gi|172040243|ref|YP_001799957.1| dimethyladenosine transferase [Corynebacterium urealyticum DSM
           7109]
 gi|171851547|emb|CAQ04523.1| dimethyladenosine transferase [Corynebacterium urealyticum DSM
           7109]
          Length = 366

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 135/288 (46%), Gaps = 32/288 (11%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D N ++KI  ++       VIE+G G G+LT  LL   
Sbjct: 68  IRQLAEELGVNPTKKLGQNFVHDPNTVRKILHAADVGPQDHVIEVGPGLGSLTLALLG-A 126

Query: 70  ARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFF--NISSPIRIIA 123
             +V  IE D      L    ++H     ++L +I  DALKV    +    +++P  ++A
Sbjct: 127 VGEVTAIEIDPLLAGRLPRTVAEHAAPVADKLHLILRDALKVTAADWAEQGLAAPTALVA 186

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L + +  + +P     L ++ Q EV +R+ A+  S  YG  SV   +   
Sbjct: 187 NLPYNVSVPVLLHLL--EQFPTISRVLVMV-QLEVADRLAAKPGSKIYGVPSVKARYFGD 243

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHF----------IPHLNPIPCCLESLKKITQE----- 228
                 I  +VF+P+PKV S ++             P    +     + + +  E     
Sbjct: 244 TFRAATIGKNVFWPAPKVDSGLVRIDRWGVGDKPAAPWAEAVASSGFAEEVVRGETFALA 303

Query: 229 --AFGKRRKTLRQSLK-RLGG----ENLLHQAGIETNLRAENLSIEDF 269
             AF +RRKTLR +L    GG    E++L  AGI+   R E L  E+F
Sbjct: 304 DAAFLQRRKTLRAALSGHFGGGQQAEDVLRAAGIDPKQRGEKLGAEEF 351


>gi|146093446|ref|XP_001466834.1| ribosomal RNA adenine dimethylase family protein [Leishmania
           infantum JPCM5]
 gi|134071198|emb|CAM69883.1| putative ribosomal RNA adenine dimethylase family protein
           [Leishmania infantum JPCM5]
          Length = 374

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S  +KT  S   I+  K  GQ+ L +  ++  I E +       VIEIG G GNLT+ LL
Sbjct: 57  SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
              A+KVI  E D +    L       P  ++L+II+ + L+ DF  F       + +AN
Sbjct: 117 QT-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV +    + 
Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIP-HLNP 214
           + +  IS + F P PKV S+VI   P H  P
Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPRP 256


>gi|156740307|ref|YP_001430436.1| dimethyladenosine transferase [Roseiflexus castenholzii DSM 13941]
 gi|156231635|gb|ABU56418.1| dimethyladenosine transferase [Roseiflexus castenholzii DSM 13941]
          Length = 302

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 140/307 (45%), Gaps = 45/307 (14%)

Query: 1   MTMNNKSHSL---KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT  N   SL   +  L    + P + MGQNFL+D   L KI  ++      TVIE+G G
Sbjct: 1   MTSANPYLSLARVRAALHALDLRPSRSMGQNFLIDGAALAKIVNAAQLTSDDTVIEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---- 113
            G LT  L+    R VI +E D +    L+       N L IIQ D L++  E       
Sbjct: 61  LGVLTWELMH-RTRAVIAVELDHRLADRLRAEFRAFSN-LAIIQGDVLRLPPEAILAEHD 118

Query: 114 -NISS---PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
            + SS   P +++ANLPY I +  L +++S    P     + +L Q+EV +RI A+    
Sbjct: 119 PDASSGARPYKVVANLPYAITSAALRHFLSNPLRPAL---MVVLVQREVADRICARP--- 172

Query: 170 HYGRLSVLTGW---RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESL 222
             G LSVL        +  ++  I    FFP+P+V STV+     + P P  +    E+L
Sbjct: 173 --GNLSVLAHAVQIYAEPEIIARIPASCFFPTPEVESTVLRL--RIRPQPAVVPDQPEAL 228

Query: 223 KKITQEAFGKRRKTLRQSLKRLGGE-------------NLLHQAGIETNLRAENLSIEDF 269
            ++ +  F   RK L  +L   GG              N L  AGI    RAE ++++++
Sbjct: 229 LRLIKAGFLHPRKQLGNALP--GGMAAMGMKTDKQKILNALTAAGINATRRAETVTLDEW 286

Query: 270 CRITNIL 276
             +   L
Sbjct: 287 GAVYRAL 293


>gi|322500967|emb|CBZ36044.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 374

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S  +KT  S   I+  K  GQ+ L +  ++  I E +       VIEIG G GNLT+ LL
Sbjct: 57  SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
              A+KVI  E D +    L       P  ++L+II+ + L+ DF  F       + +AN
Sbjct: 117 QT-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV +    + 
Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIP-HLNP 214
           + +  IS + F P PKV S+VI   P H  P
Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPRP 256


>gi|47459399|ref|YP_016261.1| dimethyladenosine transferase [Mycoplasma mobile 163K]
 gi|62900531|sp|Q6KH80|RSMA_MYCMO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|47458729|gb|AAT28050.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma
           mobile 163K]
          Length = 254

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 20/248 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL D NI++KI  +   L+   V+EIG G G LT +L+   ++ V+  E D++
Sbjct: 6   KKSLGQNFLQDKNIIEKIV-NFIPLENEDVLEIGPGQGALTNLLVK-KSKNVLAYEIDKE 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALK--VDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             P LK+          +  +D LK  +DF+          IIAN+PY I + +LF    
Sbjct: 64  LIPFLKE--KIKAKNFTLKHEDFLKSEIDFQ------DKKIIIANIPYFITSDILFKIFE 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                 F+    ++ QKE+ +++ A+ N  +YG+LSV + +      + ++    F+P P
Sbjct: 116 NHK---FFTKALIMVQKEIADKLIAKANDSNYGKLSVSSQFFANIKKVINVPRTCFYPQP 172

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            V S V++F    +     +E      +  F ++RK L  +LK     N+     I++ L
Sbjct: 173 NVDSAVVYFEFKNDIENIDIEKFLVFIKTCFSQQRKKLSNNLK-----NVYDLEKIKSVL 227

Query: 260 RAENLSIE 267
           +  NLS E
Sbjct: 228 KKLNLSFE 235


>gi|56751211|ref|YP_171912.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301]
 gi|81299122|ref|YP_399330.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942]
 gi|62900470|sp|Q5N2S8|RSMA_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365855|sp|Q31RH6|RSMA_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56686170|dbj|BAD79392.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301]
 gi|81168003|gb|ABB56343.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942]
          Length = 279

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 129/274 (47%), Gaps = 13/274 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L    IL +I  ++       V+EIG G G LTQ LL      ++ +E D+ 
Sbjct: 4   RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLA-AVDGLVAVELDRD 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLLFNW 137
               L+    Q  N   +++ D L++D+          ++P +++AN+PYNI   +L + 
Sbjct: 63  LIGQLQQRFGQAEN-FCLLEGDILQLDWTAAIADRPRFANPSKVVANIPYNITGPILQSL 121

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     P  P +E L LL Q+EV +R+ A      YG LSV   +      +  + P  F
Sbjct: 122 LGTIAQPRRPAFERLVLLVQQEVADRLCATPGQRAYGALSVRVQYLASCERVCAVPPKSF 181

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253
            P PKV STVI   P   P  C     L+K+  + F  +RK LR +LK L     +  A 
Sbjct: 182 SPPPKVQSTVICLKPRPWPQVCNNPGRLEKLLNQGFSAKRKMLRNNLKSLYSSEQIEAAF 241

Query: 254 ---GIETNLRAENLSIEDFCRITNILTDNQDIAI 284
               I    RAE LSI+ +  +   L D  D AI
Sbjct: 242 AAHQIAPEARAETLSIDQWIGLCTDLGDPTDSAI 275


>gi|315926638|gb|EFV06018.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 254

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 14/225 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   K   I+ D  
Sbjct: 5   KKQYGQNFLIDKSVLAKIIQAIPK-EMNNIIEIGPGLGDLTQELLKISQVKAYEIDND-- 61

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRIIANLPYNIGTRLLFNWI 138
             PILK    +    LE  + + +  D  + FN S    P  ++ANLPY + + ++   +
Sbjct: 62  LIPILK---KKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLVANLPYYVASHIILKAL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      L ++ Q+E+ E+  A++ +  +  L VL+    +  ++FD+ P  F P 
Sbjct: 119 EDKNCL----GLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFNPP 174

Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK 242
           PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK
Sbjct: 175 PKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLK 219


>gi|268678704|ref|YP_003303135.1| dimethyladenosine transferase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616735|gb|ACZ11100.1| dimethyladenosine transferase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 281

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 6/188 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D  ++ KI +S    +   +IEIG G G+LTQ LL +       +++
Sbjct: 2   IEAKKKFGQNFLKDTTVVSKIIQSMPQ-NNRKLIEIGPGLGDLTQALLRVKPVTAYEVDE 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D   +   K  +     +L ++Q D LK  FEK      P  ++ANLPY I T ++   +
Sbjct: 61  DLCVYLRKKYTTKLAEGQLILVQTDVLK-QFEKGSLCEEPYDLVANLPYYIATTIILEAL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    +S+ ++ QKEV E+  A   +  +  L++L      AT++FD+SP  F P 
Sbjct: 120 EDQNC----KSMIVMVQKEVAEKFAALPKTKEFTSLAILAQSIGTATILFDVSPESFEPQ 175

Query: 199 PKVTSTVI 206
           PKV S+++
Sbjct: 176 PKVVSSIL 183


>gi|210135592|ref|YP_002302031.1| dimethyladenosine transferase [Helicobacter pylori P12]
 gi|226732585|sp|B6JNS3|RSMA_HELP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|210133560|gb|ACJ08551.1| 16S rRNA (adenosine-n6,n6)-dimethyltransferase [Helicobacter pylori
           P12]
          Length = 271

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +  ++    LK  + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  NLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +   + +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCTKDSQ---NALSVLVHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L  +P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLTQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|294464127|gb|ADE77582.1| unknown [Picea sitchensis]
          Length = 351

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 32/292 (10%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           HS   +L      P+K +GQ+++L+  I + + + +   +G  V+EIG G G LT  L+ 
Sbjct: 66  HSTLKVLQSRGRFPRKSLGQHYMLNSAINELMVKEAQLKEGDVVLEIGPGTGALTNALVN 125

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-KFFNISSPI------- 119
            GA  V  IEKD     ++ +  + +  +++++Q+D  +   E +  + S+ I       
Sbjct: 126 AGAH-VFAIEKDAHMAMLVSERFNNN-GKVKVVQEDFTRCHIEPQILSFSTSIAPGSNYG 183

Query: 120 ---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLS 175
              ++++NLP+NI T +L   +        +  + LL Q E+  R+      +P Y +++
Sbjct: 184 QMAKVVSNLPFNIATDVLKLLLPMGD---MFSHVVLLLQDEMALRVVGSSPGTPEYRQIN 240

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-------IPHLNPIPCCLESLKKITQE 228
           +   + +     F +    FFP P V + V+ F        PH+       +    +   
Sbjct: 241 IFVNFYSVPEYKFKVQRTNFFPQPNVDAAVVVFKLKQVVDYPHV----ASPKGFFSMVNS 296

Query: 229 AFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           AF  +RK LR+SL+ L      E+ L   G+    R   L ++DF R+ N+L
Sbjct: 297 AFNGKRKMLRKSLQHLCASRDIESALRTLGLPETSRPGELEMDDFVRLYNLL 348


>gi|317178134|dbj|BAJ55923.1| dimethyladenosine transferase [Helicobacter pylori F16]
          Length = 271

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRSKLK--AQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQVIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L  +P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|169154349|emb|CAQ15218.1| novel protein similar to H.sapiens DIMT1L, DIM1 dimethyladenosine
           transferase 1-like (S. cerevisiae) (DIMT1L, zgc:101122)
           [Danio rerio]
          Length = 306

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 17/262 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  ++  I E +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 27  IGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDTRLVA 85

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P  N+L+I+  D LK +   FF++      +ANLPY I +  +F  +    
Sbjct: 86  ELQKRVQCTPMQNKLQILIGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 136

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S+V+   P   P P   ++   + + AF ++ K L  + K    E LL +   + +    
Sbjct: 197 SSVVRIEPKNPPPPVNFQAWDGLVRIAFVRKNKMLSAAFKSAAVEKLLEK-NYKIHCSVH 255

Query: 263 NLSI-EDF---CRITNILTDNQ 280
           N+ I EDF    +I +IL +++
Sbjct: 256 NIEIPEDFNIAPKIESILQESK 277


>gi|313621079|gb|EFR92166.1| dimethyladenosine transferase [Listeria innocua FSL S4-378]
          Length = 162

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 87/154 (56%), Gaps = 10/154 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N + ++ +D LK D      E+F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLPY 131

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            + T ++   +  D  P   +S+T + QKEV +R
Sbjct: 132 YVTTPIILKLLH-DNIP--ADSMTFMLQKEVADR 162


>gi|327398208|ref|YP_004339077.1| dimethyladenosine transferase [Hippea maritima DSM 10411]
 gi|327180837|gb|AEA33018.1| dimethyladenosine transferase [Hippea maritima DSM 10411]
          Length = 241

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 107/221 (48%), Gaps = 14/221 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL++  +  KI E     D   ++EIG G G LT+ L  LG +K +V+E D+ 
Sbjct: 4   KKQLGQHFLINEGVALKITERLKLAD--LIVEIGGGKGALTEKLKELG-KKTVVVELDKD 60

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LKD  S   N + +++ D       +FF +     +  NLPYN+   ++ N++  +
Sbjct: 61  LLTTLKDKISGEDN-IFLVRGDG------RFFKLKKSAWVCGNLPYNVSKAIIKNFVFQN 113

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
               F E +  + QKEV E I A+     + + SVL         +F + P  F P PKV
Sbjct: 114 E---FVEKMVFMVQKEVAETICAKTAQKRFSKFSVLCQLFYDVEKLFLVKPGSFLPQPKV 170

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            S V+ F    N +P   +       + F   RKT++ +L+
Sbjct: 171 DSAVVEFRRKKN-LPNIDKGFFSFLNQLFFFPRKTVKNNLR 210


>gi|283768668|ref|ZP_06341580.1| dimethyladenosine transferase [Bulleidia extructa W1219]
 gi|283105060|gb|EFC06432.1| dimethyladenosine transferase [Bulleidia extructa W1219]
          Length = 249

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 16/256 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D  I K++AE + + DG+ V+E+G G G+LT+ L  + A+KVI  E D     +L D  
Sbjct: 1   MDPVITKRVAEEANA-DGM-VLEVGPGIGSLTEQLAYV-AKKVIAYEIDLGLKKVLTDHF 57

Query: 91  SQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           +   N ++I   D LKVD     E +      + + ANLPY I + +LF   + +     
Sbjct: 58  ASFEN-VDIQFQDFLKVDLHEKVEDWKKQYGKVVVCANLPYYITSAVLFKVFAEEKI--- 113

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            E++T++ QKEVG+R  A  N   Y  LSV      +   +F +    F PSPKV S +I
Sbjct: 114 -ETITVMVQKEVGDRFHAMVNDHEYSALSVEGQSYYEVKKLFTVPGRSFNPSPKVDSVII 172

Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL-KRLGGENL---LHQAGIETNLRAE 262
            F           E+     +  FG+RRKT+R +L K    E +   L +  I+   R +
Sbjct: 173 QFQRKEVTPSFDREAYFGFIRNCFGQRRKTIRNNLQKNFSNEEIDKALQKCEIDPGQRPQ 232

Query: 263 NLSIEDFCRITNILTD 278
           +LS+  +  +  +L +
Sbjct: 233 SLSVLQYQSLFEVLYE 248


>gi|119961382|ref|YP_947119.1| dimethyladenosine transferase [Arthrobacter aurescens TC1]
 gi|166987690|sp|A1R4F7|RSMA_ARTAT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119948241|gb|ABM07152.1| dimethyladenosine transferase [Arthrobacter aurescens TC1]
          Length = 293

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 133/279 (47%), Gaps = 26/279 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF++D N +++I  ++   D  TV+E+G G G+LT  LL   
Sbjct: 20  IRRLAEEIGVRPTKTLGQNFVIDGNTIRRIVAAAAIGDDETVLEVGPGLGSLTLGLLD-A 78

Query: 70  ARKVIVIEKDQQFFPILKD-----ISSQHPNRLE---IIQDDALKVDFEKFFNISSPIRI 121
           A+ V+ +E D    P+L +     + +  P   E   ++  DA+KV          P  +
Sbjct: 79  AKAVVAVEID----PVLAEKLPETVRAWRPGAEENFHLVLSDAMKVTELPL----PPTAL 130

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   ++ + +    +P     L ++ Q EV +R+ A   S  YG  SV   W 
Sbjct: 131 VANLPYNVAVPVVLHLLQ--HFPSLQHGL-VMVQDEVADRLAATPGSKIYGVPSVKAAWY 187

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQS 240
                   I  +VF+P+PK+ S ++ F  H  P      E +  +   AF +RRKTLR +
Sbjct: 188 GHMRKAGVIGMNVFWPAPKIHSGLVAFTRHDPPETHATREQVFAVIDAAFAQRRKTLRAA 247

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           L    G     E  L  AG++   R E L I  + +I  
Sbjct: 248 LAGWAGSASEAERCLVAAGLDPTARGEVLDINAYVKIAE 286


>gi|225437553|ref|XP_002276165.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 350

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 14/226 (6%)

Query: 16  HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           HY+  +   K  GQ+ L +  ++  I E SG      ++EIG G GNLT+ LL  G + V
Sbjct: 20  HYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KSV 78

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I +E D +    L+      P  NRL++IQ D L+ D   +F+I      +AN+PY I +
Sbjct: 79  IAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLP-YFDI-----CVANIPYQISS 132

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L F  ++     P +    ++FQ+E   R+ AQ     Y RLSV T    + + +  + 
Sbjct: 133 PLTFKLLA---HRPVFRCAVIMFQREFAMRLVAQPGDNLYCRLSVNTQLLARVSHLLKVG 189

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
            + F P PKV S+V+   P     P   +    + +  F ++ KTL
Sbjct: 190 KNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTL 235


>gi|42526590|ref|NP_971688.1| dimethyladenosine transferase [Treponema denticola ATCC 35405]
 gi|62900552|sp|Q73NS2|RSMA_TREDE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|41816783|gb|AAS11569.1| dimethyladenosine transferase [Treponema denticola ATCC 35405]
          Length = 293

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 32/286 (11%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAE---SSGSLD-GITVIEIGAGPGNLTQML 65
           LK++L       +K  GQNFL+D    KK  E   S  +LD G  V E+G G G +T +L
Sbjct: 18  LKSLLETLGFAMQKKFGQNFLID----KKTRENLISFLTLDKGTRVWEVGPGLGAMTYLL 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIAN 124
           L  G   +   E D+ F  +LK I  ++  +   +I+ D  K           P     N
Sbjct: 74  LEKGVH-LTAFEIDKGFISLLKKIFLENSKQNFTLIEGDVQKNWLPYLIEHGKPNVFFGN 132

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI + L+ + + A      ++++    QKE  ERITA+  + +Y   SVL     + 
Sbjct: 133 LPYNIASDLIASTVEAGV---VFDTMLFTVQKEAAERITARPGNKNYTAFSVLCSLFYEC 189

Query: 185 TMMFDISPHVFFPSPKVTSTVI------HFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            ++  I    F+P P V S  +       F  + N      +   KI +  F  RRK ++
Sbjct: 190 KIVKTIPASAFWPQPNVESAAVLFKAKKEFAEYKN-----FKLFIKIVKALFSSRRKNIK 244

Query: 239 QSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            +L      N        +L ++G+  NLRAE+L++ DF  +++I+
Sbjct: 245 NNLGSWMKSNGYGDKIDLVLERSGLSGNLRAESLALYDFLLLSDII 290


>gi|152965013|ref|YP_001360797.1| dimethyladenosine transferase [Kineococcus radiotolerans SRS30216]
 gi|259494252|sp|A6W6U4|RSMA_KINRD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|151359530|gb|ABS02533.1| dimethyladenosine transferase [Kineococcus radiotolerans SRS30216]
          Length = 300

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 128/276 (46%), Gaps = 16/276 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     I P K +GQNF++D N +++I   +       V+E+G G G+LT  LL
Sbjct: 15  ARDVRDLADRLSIRPTKTLGQNFVVDANTVRRIVRVADLTPEDVVVEVGPGLGSLTLALL 74

Query: 67  TLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
                +V+ +E D       P       +     E++  DA+++          P  ++A
Sbjct: 75  E-AVDRVVAVEIDPVLAAELPATVAARGRPGTSFEVVLADAVQL---AELPGPPPTALVA 130

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L   ++   +P   + L ++ Q EV +R+ A   S  YG  SV T W   
Sbjct: 131 NLPYNVAVPVLLTMLA--RFPSLRQGL-VMVQSEVADRLVAPPGSRTYGVPSVKTAWYAS 187

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLK 242
           A     + P VF+P P+V S ++ F     P      E +  +   AF +RRKTLR +L 
Sbjct: 188 AKRAGSVPPPVFWPVPRVDSGLVSFTRRPAPETTAGREEVFALVDAAFAQRRKTLRAALA 247

Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
              G        L  AG++ ++R E L + DF RI 
Sbjct: 248 GWAGSPAAAEEALRAAGVDPSVRGEQLGVADFARIA 283


>gi|225709718|gb|ACO10705.1| Probable dimethyladenosine transferase [Caligus rogercresseyi]
          Length = 313

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 124/253 (49%), Gaps = 19/253 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + SG     TV+EIG G GNLT  LL +  ++VIVIE D +   
Sbjct: 34  LGQHILKNPAIVDSIIDKSGLRPTDTVLEIGPGTGNLTAKLLQV-VKRVIVIEVDPRMVS 92

Query: 85  ILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            ++      P+R  LEI+  DA+K D   FF++      +AN+PY I + L+F  +    
Sbjct: 93  EIQKRFQHSPHRPKLEILVGDAIKTDLP-FFDVC-----VANVPYQISSPLVFKLL---I 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+ +  L+FQ+E   R+ A      + RLS+ T   +    +  +  + F P PKV 
Sbjct: 144 HRPFFRAAILMFQREFALRLIAPPGDKLFCRLSINTQLLSTVHHLLKVGRNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGIE 256
           S+V+  I H NP P    +    +T+  F ++ KTL  +  +        +N      ++
Sbjct: 204 SSVVR-IEHKNPPPPINFKEWDGLTRICFVRKNKTLGAAFSQTPVLMTLDKNYRTHLSLK 262

Query: 257 TNLRAENLSIEDF 269
             +  E  SI+D 
Sbjct: 263 EEMVPEEFSIKDL 275


>gi|19703632|ref|NP_603194.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|27151573|sp|Q8R6B1|RSMA_FUSNN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|19713742|gb|AAL94493.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 264

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 128/266 (48%), Gaps = 21/266 (7%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +K+  +E D+
Sbjct: 6   KKKYGQNFLNNKDEILNKIIEVSNIDDNDEILEIGPGQGALTSLLVE-RVKKITCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   S   N   ++ +D L+VD  ++ N  +  +++AN+PY I + ++   I  
Sbjct: 65  DLENTLRKKFSSKEN-YTLVMEDVLEVDLRRYINQGT--KVVANIPYYITSPIINKIIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K+    G L++   +  ++  +F I    F P P 
Sbjct: 122 ---KDLIDEAYIMVQKEVGERICA-KSGKERGILTLAVEYYGESEYLFTIPREFFNPIPN 177

Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250
           V S  I         + N I   L    K  + AF  +RK +  +L  LG      + +L
Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEIL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           +Q  I  N RAEN+SI+ F  +  I 
Sbjct: 236 NQIEISENERAENISIDKFIELIKIF 261


>gi|291235880|ref|XP_002737862.1| PREDICTED: Probable dimethyladenosine transferase-like
           [Saccoglossus kowalevskii]
          Length = 305

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 127/266 (47%), Gaps = 19/266 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+ +GQ+ L +  ++  I E +   +    +E+G G GN+T  LL    +KV+  E D +
Sbjct: 23  KRDLGQHILKNPLVVDGIIEKAALRNTDVALEVGPGTGNMTVKLLD-KVKKVVACELDPR 81

Query: 82  FFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               ++      P+  +L++I  D LK D   FF++      +ANLPY I +  +F  + 
Sbjct: 82  LAAEVQKRVQGTPSQTKLQLIIGDVLKSDLP-FFDVC-----VANLPYQISSPFVFKLL- 134

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                PF+    L+FQ+E  +R+ A+     Y RLS+ T    +  ++  +  + F P P
Sbjct: 135 --LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDLVMKVGKNNFRPPP 192

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-----RLGGENLLHQAG 254
           KV S+V+   P   P P   +    + + AF ++ KTL  + K      +  +N      
Sbjct: 193 KVESSVVRLEPRNPPPPINFQEWDGLVRIAFTRKNKTLSAAFKHNSVLEMLEKNYRIHCS 252

Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280
           ++    A + SI+D  ++  IL DN+
Sbjct: 253 VKNITVATDFSIKD--KLEKILLDNE 276


>gi|317013195|gb|ADU83803.1| dimethyladenosine transferase [Helicobacter pylori Lithuania75]
          Length = 271

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +  ++    LK  + + P +LE+++ DAL      F     P  +I+NLPY I TRL  N
Sbjct: 62  NLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLALN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|18313918|ref|NP_560585.1| dimethyladenosine transferase [Pyrobaculum aerophilum str. IM2]
 gi|27151587|sp|Q8ZTJ4|RSMA_PYRAE RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|18161487|gb|AAL64767.1| dimethyladenosine transferase [Pyrobaculum aerophilum str. IM2]
          Length = 228

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 28/239 (11%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + Q+FL D ++ + IA    S  G+ VIE+G G G LT + L   ++ V  IE D+ 
Sbjct: 3   RRRLAQHFLRDPSVAEYIAGLVPS--GLDVIEVGPGAGALT-IPLAKRSKTVYAIEIDKA 59

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEK--FFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L+ I+   P  + II  DAL+V++ +  FF        ++N+PY+I + LLF  I 
Sbjct: 60  LAERLRGIA---PPNVVIIVGDALEVEWPRADFF--------VSNVPYSITSPLLFKLIR 108

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                       L  Q+EV ER+ A+  S  YGRL+V         ++  + P+VF P P
Sbjct: 109 HRL------PAVLTIQREVAERLVARPGSEDYGRLTVAVQCFYDVEILRVLPPYVFDPPP 162

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           KV S V+  +P     PC    +  +K +   F  RRKTLR+ LK       ++Q  +E
Sbjct: 163 KVYSAVVRLMPK---APCVDNFDEFEKFSAWLFSARRKTLRR-LKLADSTKRVYQLTLE 217


>gi|19074123|ref|NP_584729.1| DIMETHYLADENOSINE TRANSFERASE [Encephalitozoon cuniculi GB-M1]
 gi|19068765|emb|CAD25233.1| DIMETHYLADENOSINE TRANSFERASE [Encephalitozoon cuniculi GB-M1]
          Length = 277

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 105/223 (47%), Gaps = 15/223 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +L ++  I E +      TV+E+G G GNLT  LL   A+KV+  E D + 
Sbjct: 8   KQHGQHILKNLGVIDTIIERARIKPTDTVLEVGGGTGNLTMKLLQ-KAKKVVCYEIDPRL 66

Query: 83  FPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              L    +  P    + ++   DALK DF  F         I NLPY I +  +F  + 
Sbjct: 67  AAELAKKVNGTPGMAQKFQLFVGDALKHDFPHF------DLCITNLPYQISSPFVFKLLK 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D     ++   ++FQKE  +R+ A+  SP Y RLSV      +   +  +S + F P P
Sbjct: 121 YD-----FKCAFIMFQKEFSDRLVARPGSPEYCRLSVGAQILAQIDHVLKVSKNSFVPPP 175

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           KV S+ +   P +   P  L    +  +  F ++ KTLR + K
Sbjct: 176 KVESSFVRIEPRIPRPPIDLGEFDRFLKICFLRKNKTLRANFK 218


>gi|326531118|dbj|BAK04910.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 351

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 19/221 (8%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   +    G  V+E+G G GNLT  LL     +V  +E D + 
Sbjct: 39  KPRGQHLLTNPRVLDAIVRHAALRPGDAVLEVGPGTGNLTARLLAFPVNRVTAVETDPRM 98

Query: 83  FPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFN 136
              +  +  +     +L +IQ DA++ +F +F ++      +AN+PY I +    +LLF 
Sbjct: 99  VDAVTARFGALDMTRKLTVIQGDAMETEFPEF-DV-----CVANIPYGISSPLIAKLLFG 152

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                     + + TLL QKE   R+ A      Y RL+   G      ++ D+S   F 
Sbjct: 153 AY-------HFRTATLLLQKEFARRLVAMPGDSEYNRLAANVGMVADVKLLMDVSKRDFV 205

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           P P+V S+++   P   P    L      T+E FG++ KTL
Sbjct: 206 PMPRVDSSLVEIRPRAAPPEVDLAEWLGFTRECFGQKNKTL 246


>gi|294055275|ref|YP_003548933.1| ribosomal RNA adenine methylase transferase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614608|gb|ADE54763.1| ribosomal RNA adenine methylase transferase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 274

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 10/238 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + +L     +P K +GQNFL+D NI++K  E +   +G +V+E+G G G LT+ +L  
Sbjct: 7   STRELLEALDHLPNKKLGQNFLVDGNIVRKSIELAEIDEGSSVVEVGPGLGTLTRAILGS 66

Query: 69  GARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANL 125
           GA K+  +E+D      L+D +  Q PN  ++ + D L             S  +I+ANL
Sbjct: 67  GA-KLWAVERDSTLAEYLRDKVVPQQPN-FDLTEGDCLDHPRAGLPEELAESGFKIVANL 124

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T     W+ A    P  + + L+ QKE  +R  A     ++G +S+       A 
Sbjct: 125 PYAVST----PWMEAIISGPLPQRMVLMLQKEAADRYIADSGIKNFGAISIFLQAAYHAH 180

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
               +S + F P+PKV S ++      N +    E+ +   +  F +RRK L    K+
Sbjct: 181 SKHLVSANCFHPAPKVDSILLRLDLKENAVQFNAET-RACIRRIFTQRRKQLGALCKK 237


>gi|289642509|ref|ZP_06474653.1| dimethyladenosine transferase [Frankia symbiont of Datisca
           glomerata]
 gi|289507683|gb|EFD28638.1| dimethyladenosine transferase [Frankia symbiont of Datisca
           glomerata]
          Length = 319

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 125/275 (45%), Gaps = 16/275 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +++I +   I P K  GQNFL+D N ++++   +G     TV+EIG G      + L   
Sbjct: 33  VRSISAAVGIRPTKRRGQNFLVDPNTVRRLVRLAGVEPDETVLEIGPG-LGSLTLGLLPA 91

Query: 70  ARKVIVIEKDQQFFPILKDISSQH-----PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           AR+V+ +E D+     L    +         RL ++  D L+++         P  + AN
Sbjct: 92  ARRVVAVELDEALATALPATVTARLGPAVAARLTVLAADGLRLEPADISG-DPPSVLAAN 150

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   LL   +  + +P     L ++ Q EV +R+TA      YG  SV   W   A
Sbjct: 151 LPYNVAVPLLLGVL--ERFPSVRRGL-VMVQAEVADRLTASPGGRVYGVPSVKMAWYASA 207

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
                +   VF+P P V S+++ F  H     P    ++      AF +RRKTLR +L  
Sbjct: 208 RPAGPVPRAVFWPQPNVDSSLVAFSRHDRQGSPRLRRAVFAAVDAAFAQRRKTLRAALSG 267

Query: 244 LGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
             G     E L   AGI+ + R E L +  F R+ 
Sbjct: 268 WAGSADQAERLALAAGIDPSARGEILDVAAFTRLA 302


>gi|308062691|gb|ADO04579.1| dimethyladenosine transferase [Helicobacter pylori Cuz20]
          Length = 279

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 10  VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 69

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 70  SLCEKMRSKLK--AQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 121

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 122 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGDATLLFDVPPSAFS 174

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 175 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 234

Query: 241 LKR 243
           LK+
Sbjct: 235 LKK 237


>gi|217034556|ref|ZP_03439965.1| hypothetical protein HP9810_874g13 [Helicobacter pylori 98-10]
 gi|216942976|gb|EEC22459.1| hypothetical protein HP9810_874g13 [Helicobacter pylori 98-10]
          Length = 271

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRSKLK--AQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|148654432|ref|YP_001274637.1| dimethyladenosine transferase [Roseiflexus sp. RS-1]
 gi|148566542|gb|ABQ88687.1| dimethyladenosine transferase [Roseiflexus sp. RS-1]
          Length = 297

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 143/307 (46%), Gaps = 45/307 (14%)

Query: 1   MTMNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT++N   S   ++  L    + P + MGQNFL+D   L  I  ++      TV+E+G G
Sbjct: 1   MTVSNPYLSRARVRAALHALGLRPSRSMGQNFLIDGAALATIVTAAALTADDTVVEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---- 113
            G LT  L+   AR V+ +E D++    L+      PN L IIQ D L++          
Sbjct: 61  LGVLTWELVQ-RARTVVAVELDRRLAERLRTEFRTFPN-LAIIQGDVLRLPPATILAEHD 118

Query: 114 ----NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
               + + P +++ANLPY I +  L +++S    P     + +L Q+EV  RI A+    
Sbjct: 119 PDAASGARPYKVVANLPYAITSAALRHFLSTPLRPTL---MVVLVQQEVAARICARA--- 172

Query: 170 HYGRLSVLTGW---RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESL 222
             G LSVL        +  ++  +    FFP+P+V S+V+     ++P P  +    E+L
Sbjct: 173 --GDLSVLAHAVQIYAEPEIVARVPASSFFPAPEVDSSVLRL--RIHPQPAVVSDQPEAL 228

Query: 223 KKITQEAFGKRRKTLRQSLKRLGGE-------------NLLHQAGIETNLRAENLSIEDF 269
            ++ +  F   RK L  +L   GG              + L  AGI+   RAE +++E++
Sbjct: 229 LRLIKAGFLHPRKQLGNALP--GGMAAMGMKIDRQRVLDALAAAGIDPTRRAETVTLEEW 286

Query: 270 CRITNIL 276
             +   L
Sbjct: 287 GAVYRAL 293


>gi|91091694|ref|XP_972612.1| PREDICTED: similar to dimethyladenosine transferase [Tribolium
           castaneum]
 gi|270001061|gb|EEZ97508.1| hypothetical protein TcasGA2_TC011352 [Tribolium castaneum]
          Length = 306

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 119/254 (46%), Gaps = 24/254 (9%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  ++  + + +      TV+EIG G GNLT  LL    ++V+  E D + 
Sbjct: 25  KSFGQHILKNPLVITSMLDKAALKPSDTVLEIGPGTGNLTLKLLE-SVKQVVACEIDHRL 83

Query: 83  FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L+      P  ++L+I+  D LK +   FF++      +AN+PY I + L+F  +  
Sbjct: 84  VAELQKRVQNSPFKSKLQILIGDVLKTELP-FFSVC-----VANIPYQISSPLVFKLL-- 135

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               PF+    L+FQKE  +R+ A      Y RLS+ T    +  M+  +  + F P PK
Sbjct: 136 -LHRPFFRCAVLMFQKEFADRLVAVPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPK 194

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           V S V+   P   P P        +T+ AF ++ KTL  + ++      +  A +E N +
Sbjct: 195 VESAVVRIEPRNPPPPISYTEWDGLTRIAFSRKNKTLGAAFRQ-----SVVLATLEKNYK 249

Query: 261 AENLSIEDFCRITN 274
           +       FC + N
Sbjct: 250 S-------FCSVNN 256


>gi|303388914|ref|XP_003072690.1| dimethyladenosine transferase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303301832|gb|ADM11330.1| dimethyladenosine transferase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 277

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 124/269 (46%), Gaps = 35/269 (13%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L ++ ++  I E +      TV+EIG G GNLT  LL   A+KVI  E D + 
Sbjct: 8   KQHGQHILKNMGVIDTIIERAKIKPTDTVLEIGGGTGNLTMKLLQ-KAKKVICYEIDPRL 66

Query: 83  FPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              L    +  P    + ++   DALK DF  F         I+NLPY I +  +F  + 
Sbjct: 67  AAELAKKVNGTPGMAQKFQLFVGDALKHDFPHF------DLCISNLPYQISSPFMFKLLK 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D     ++   ++FQ+E  +R+ A+  S  Y RLSV      +   +  +S + F P P
Sbjct: 121 YD-----FKCAFIMFQREFSDRLVAKPGSSEYCRLSVGAQMLAQVDHVLKVSKNSFVPPP 175

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK------RLGG------- 246
           K+ S+ +   P +   P  LE   +  +  F ++ KTL+ + +      ++ G       
Sbjct: 176 KIESSFVRIEPRIPRPPIDLEEFDRFLKICFLRKNKTLKANFRNSSLVSKVKGNPSFENT 235

Query: 247 ------ENLLHQAGIETNLRAENLSIEDF 269
                 E +L +A ++   RA  +SI+DF
Sbjct: 236 TPEEVFEKVLSRAELD-GARAAKMSIDDF 263


>gi|219115097|ref|XP_002178344.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410079|gb|EEC50009.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 322

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 12/225 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P   +GQ+FL +  ++  I + +G      V+EIG G GN+T  +L   A+KV+ +E 
Sbjct: 37  ISPNTSLGQHFLKNPAVISSIIDKAGLKATDVVLEIGPGTGNMTVPMLQ-RAKKVVALEF 95

Query: 79  DQQFF-PILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +LK        ++L++IQ DA+K  +  FF+      +IANLPY I ++++F 
Sbjct: 96  DSRMVREVLKRTEGTDLAHKLQVIQGDAMKTAWP-FFDC-----MIANLPYQISSQVVFK 149

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S     P +    L+FQ+E   R++A+     Y RLSV T    K   +  +    F 
Sbjct: 150 LLSHR---PMFRCAVLMFQEEFALRLSARPGEALYCRLSVNTQLLAKVDQLLKVGKQNFR 206

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           P PKV S V+       P P        + +  F ++ KTLR  L
Sbjct: 207 PPPKVESRVVRIELKNPPPPVNFTEWDGMIRLLFNRKNKTLRSVL 251


>gi|227832678|ref|YP_002834385.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182836|ref|ZP_06042257.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453694|gb|ACP32447.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 280

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 130/276 (47%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNFL D N +++I  ++       V+E+G G      + L   
Sbjct: 12  IRELAAELDVTPTKKLGQNFLHDPNTIRRIVAAADLSPEDRVVEVGPG-LGSLTLGLLGE 70

Query: 70  ARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              V  +E D +    L D     ++   +RL +++ DAL V+  +   +  P  ++ANL
Sbjct: 71  VEHVTAVEIDPRLAGKLPDTVAARAADFADRLSVVEKDALTVEAGE---LGEPTALVANL 127

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  + +P     L ++ Q EV ER+ A   S  YG  SV   +     
Sbjct: 128 PYNVAVPVLLHLL--EVYPSIRRVLVMV-QLEVAERLAAGPGSKVYGIPSVKASFYGPVR 184

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRL 244
               I  +VF+P+PK+ S ++  I    P    L   L  +   AF +RRKTLR +L   
Sbjct: 185 QAGTIGKNVFWPAPKIESGLVR-IDCTRPFDEALRPRLFALIDAAFAQRRKTLRAALAGF 243

Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
            G     E  L  A I+  LR E L +EDF R+  +
Sbjct: 244 YGSAAAAEEALRTADIDPRLRGEKLGVEDFVRLAEV 279


>gi|148242414|ref|YP_001227571.1| dimethyladenosine transferase [Synechococcus sp. RCC307]
 gi|166221711|sp|A5GTK9|RSMA_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|147850724|emb|CAK28218.1| Dimethyladenosine transferase [Synechococcus sp. RCC307]
          Length = 274

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 122/265 (46%), Gaps = 27/265 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ++L D ++L++I  ++       V+E+G G G LT  LL   A  V  +E D+ 
Sbjct: 9   RKRFGQHWLKDESVLQRIVAAAALQPDDHVLEVGPGRGALTAQLLASPAASVQAVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKV----DFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
               L+   +  P R ++   D L +    D E+      P +++AN+PYNI   LL   
Sbjct: 69  LVAGLQQRFAAEP-RFQLQSGDVLALPQLGDGER-----RPTKVVANIPYNITGPLLERL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     P  P ++ L LL Q+EV  RI+A+     +  LSV          +  + P  F
Sbjct: 123 VGRLDRPVEPPYQRLVLLVQQEVARRISARAGQSSFSALSVRMQLLAHCRSVCPVPPRCF 182

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE-------AFGKRRKTLRQSLKR----L 244
            P PKV S VI     L+P+P      + + ++       AF  RRK +R +L      +
Sbjct: 183 QPPPKVQSEVI----SLDPLPADQRPPQAVAKQVEHLLRLAFSARRKMVRNTLASAAPAV 238

Query: 245 GGENLLHQAGIETNLRAENLSIEDF 269
           G E  L  AG+    R + ++ + +
Sbjct: 239 GLEVWLADAGLTPQQRPQEIAAQQW 263


>gi|327311782|ref|YP_004338679.1| dimethyladenosine transferase [Thermoproteus uzoniensis 768-20]
 gi|326948261|gb|AEA13367.1| dimethyladenosine transferase [Thermoproteus uzoniensis 768-20]
          Length = 228

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 33/225 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           ++ +GQ+ L D    + +AE    L  +G  V+E+GAG G LT + L   A KV  IE D
Sbjct: 2   RRRLGQHMLRD----RSVAEYMAGLVPEGSVVLEVGAGTGTLT-LELAKRASKVYAIELD 56

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGTRLLFNW 137
           +     L   S++ P  +E+I  DAL++++    FF         +N+PY I + LL   
Sbjct: 57  RALAAYL---SARAPPNVEVIVGDALRLEWPPADFFA--------SNIPYYISSPLLLR- 104

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++    P       ++ Q+EV ERI+A+  S +YGRL+V         ++  + P  F P
Sbjct: 105 LAERRMP-----AVVMLQREVAERISAEPGSENYGRLTVAVRCNYDVEVLRTVPPRAFSP 159

Query: 198 SPKVTSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQ 239
            P+V S V+     L P P C++   S +K T   F +RRK  R+
Sbjct: 160 PPQVYSAVV----RLTPRPPCVDDFKSFEKFTAMLFSQRRKLARK 200


>gi|297380589|gb|ADI35476.1| dimethyladenosine transferase [Helicobacter pylori v225d]
          Length = 271

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 115/243 (47%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I ++   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRSKLK--AQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQVRFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|261838704|gb|ACX98470.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter
           pylori 51]
          Length = 271

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRSKLK--AQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGSATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|325179921|emb|CCA14323.1| dimethyladenosine transferase putative [Albugo laibachii Nc14]
          Length = 311

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 12/220 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P   +GQ+FL +  I  +I   +        +E+G G GNLT  +L   A+KVI +E D 
Sbjct: 29  PNTSIGQHFLKNPMIAAQIVSKAALRSTDVCLEVGPGTGNLTMKILN-QAKKVIAVEYDL 87

Query: 81  QFFP-ILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           +    I K + +++H   L++I  D ++V    FF++      IANLPY I +  +F  +
Sbjct: 88  RMIAEIQKRVQNTEHAKHLQVIHGDVIRVQLP-FFDVC-----IANLPYQISSPFVFKLL 141

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +     P +    ++FQ+E  +R++A+     Y RLSV T    K   +  +  + F P 
Sbjct: 142 AHR---PMFRCAVVMFQEEFAKRLSAKPGDQLYCRLSVNTQLLAKVDQLIKVGKNNFRPP 198

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
           PKV S V+   P   P P        + +  F ++ KTLR
Sbjct: 199 PKVESRVVRIEPRNPPPPVNFVEWDGMIKILFNRKNKTLR 238


>gi|167042535|gb|ABZ07259.1| putative ribosomal RNA adenine dimethylase [uncultured marine
           microorganism HF4000_ANIW133F6]
 gi|167043080|gb|ABZ07791.1| putative ribosomal RNA adenine dimethylase [uncultured marine
           microorganism HF4000_ANIW141C7]
          Length = 290

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 126/272 (46%), Gaps = 27/272 (9%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITV----IEIGAGPGNLTQMLLTLGARKVI 74
           I P + +GQ+FLLD  ++ +  E +G    IT     +EIG GPG+LT  LL  GAR V 
Sbjct: 17  IRPDRALGQHFLLDEAVIARAVELAGVDSPITAASHCLEIGPGPGSLTLELLRTGAR-VT 75

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +E D +    L  +      RL + Q DAL+VD+    +IS    I++NLP+ I + +L
Sbjct: 76  ALEVDAEAIAHLGRVFGTADGRLSVQQIDALQVDWPT--DIS---HIVSNLPFQISSPVL 130

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
                     P    + LL Q E  ER+  +  +   G L      +    +   +SP  
Sbjct: 131 DRIQKHHARNPL-SGIVLLVQDEFAERMVMKGGNASRGPLGHSLWLQFDIELDLRVSPSA 189

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK----RLGGEN 248
           F P+P+VTS ++   P        ++    + +    F  RR+ LR +LK    RL   N
Sbjct: 190 FSPAPRVTSRLVALKPATRENTDQIDERLFRLVISSCFANRRRKLRTTLKRPPRRLNRIN 249

Query: 249 LLHQA----GIET------NLRAENLSIEDFC 270
             H+     GIE       +LR ENL+ ED+ 
Sbjct: 250 GWHKERWTRGIERLEPALLDLRPENLTSEDWA 281


>gi|239917075|ref|YP_002956633.1| ksgA dimethyladenosine transferase [Micrococcus luteus NCTC 2665]
 gi|281414463|ref|ZP_06246205.1| dimethyladenosine transferase [Micrococcus luteus NCTC 2665]
 gi|239838282|gb|ACS30079.1| ksgA dimethyladenosine transferase [Micrococcus luteus NCTC 2665]
          Length = 307

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 128/288 (44%), Gaps = 34/288 (11%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ I +   + P K  GQNF++D N +++I +++       V+EIG G G+LT  LL   
Sbjct: 19  VRRIAAELDLRPTKQWGQNFVIDPNTIRRIVQAADVSADEHVLEIGPGLGSLTLGLLDAA 78

Query: 70  ARKVIVIEKD-----------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--- 115
           A  V  +E D            +F P  +D        L ++  DA+ +  +    +   
Sbjct: 79  A-AVTAVEIDPVTAARLPRTAAEFRPGAEDA-------LAVLHADAMTLSEQALAEVRPA 130

Query: 116 ---SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
               SP  ++ANLPYN+   +L + ++    P     L ++ Q+EV +R+ A   S  YG
Sbjct: 131 AAAGSPTALVANLPYNVAVPVLLHALA--VLPGLRHGL-VMVQEEVADRLAAGPGSKVYG 187

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFG 231
             S    W         I   VF+P+P++ S ++ F     P        +  +   AF 
Sbjct: 188 VPSAKAAWYADVRKAGTIGTQVFWPAPRIHSGLVAFTRREPPAGSASRREVFAVVDAAFA 247

Query: 232 KRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           +RRKTLR +L    G     E+ L  AG++   R E L I  F RI  
Sbjct: 248 QRRKTLRAALASWAGSPPAAEDALVAAGVDPRARGEALDIAAFARIAE 295


>gi|332674195|gb|AEE71012.1| dimethyladenosine transferase [Helicobacter pylori 83]
          Length = 271

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 117/243 (48%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I ++   L+ + ++EIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK    + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRSKLK--VQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P+ F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVAFKFCAKDSQ---NALSVLTQAIGNATLLFDVPPNAFS 166

Query: 197 PSPKVTSTVIHFI---------PHLNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKDPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|260889782|ref|ZP_05901045.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254]
 gi|260860388|gb|EEX74888.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254]
          Length = 282

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 19/266 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D N+  +I + +   +   V+EIG G G LT+ L+   ++ +   E D  
Sbjct: 23  KKNNGQNFLNDSNLSDEILDVANIDEKTEVLEIGPGLGFLTEKLIE-NSKFLTAFEIDDD 81

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P L +   ++    ++I  D ++ D +KFF     ++++AN+PY I + ++   +   
Sbjct: 82  LIPFL-NKKFENKQNFKLIHQDFMEADLKKFFEDKKNVKVVANIPYYITSPIINKLLE-- 138

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT---GWRTKATMMFDISPHVFFPS 198
            +    + + L+ QKEV ERI +Q   PH   +S+LT    +  +A  +F +    F P 
Sbjct: 139 -YRENIDEIYLMVQKEVAERIASQ---PHSKNMSLLTHAVQFYAEAEYLFTVPKEKFDPV 194

Query: 199 PKVTSTVIH---FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LL 250
           PKV S  +                E   K  +EAF  +RK++  +L +LG         L
Sbjct: 195 PKVDSAFLGIKILKDKRYESQISEEKYFKYLKEAFSNKRKSIANNLTKLGFSKDVVGTAL 254

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
            + G     R E  S+++F     IL
Sbjct: 255 EKVGKTRLARTEEFSVQEFIDFIEIL 280


>gi|316975090|gb|EFV58549.1| dimethyladenosine transferase [Trichinella spiralis]
          Length = 296

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 122/263 (46%), Gaps = 18/263 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K H  K+ +S  +I  K   GQ+ L +  I+  I E +    G T+ E+G G GNLT + 
Sbjct: 7   KRHIGKSNISRQEIPFKTTYGQHILKNPLIVNSIIEKAAIKQGDTIFEVGPGTGNLTVVA 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
             +  R    + K  Q         S   ++LEI+  DALKV +  FF++      +ANL
Sbjct: 67  CEIDYRLAAELTKRVQ--------GSALQSKLEILPGDALKVQWP-FFDVC-----VANL 112

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           P+ I +  +F  +     PPF     L+FQKE  ER+ A+     Y RLSV      K  
Sbjct: 113 PFQISSPFVFRLLLHR--PPF-RCAVLMFQKEFAERLVAKPGDRLYCRLSVNVQLLAKVN 169

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            +  +  + F P PKV +TV+ F   + P P   +    + + AF ++ K+L  + K   
Sbjct: 170 AVIRVGRNNFRPPPKVDATVVRFELKMPPPPIDFQEWDGLLRIAFLRKNKSLSSAFKFKK 229

Query: 246 GENLLHQAGIETNLRAENLSIED 268
             ++L +     +    N+ IED
Sbjct: 230 VLDMLDK-NYRVHCSVNNIKIED 251


>gi|242063872|ref|XP_002453225.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor]
 gi|241933056|gb|EES06201.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor]
          Length = 261

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 120/247 (48%), Gaps = 18/247 (7%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL  GA  V  +EKD
Sbjct: 1   VPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGA-TVFAVEKD 59

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPIRIIANLPYNIG 130
           +    ++KD       +L++I++D  K            EK+       ++++NLP+N+ 
Sbjct: 60  KHMATLVKD-RFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVS 118

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFD 189
           + ++   +        +  + L+ Q E   R+  A    P Y  ++V   + +K    F 
Sbjct: 119 SEVVKLLLPMGDV---FSVVVLMLQDETAVRLADASIQIPEYRPINVFVNFYSKPEYKFR 175

Query: 190 ISPHVFFPSPKVTSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           +    FFP PKV   VI F + +    P     +S   +   AF  +RK LR+SL+ L  
Sbjct: 176 VDRENFFPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRKMLRKSLQHLCS 235

Query: 247 ENLLHQA 253
            + +  A
Sbjct: 236 SSEIEAA 242


>gi|57525891|ref|NP_001003556.1| probable dimethyladenosine transferase [Danio rerio]
 gi|50417873|gb|AAH78286.1| Zgc:101122 [Danio rerio]
          Length = 306

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 125/262 (47%), Gaps = 17/262 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  ++  I E +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 27  IGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDARLVA 85

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P  N+L+I+  D LK +   FF++      +ANLPY I +  +F  +    
Sbjct: 86  ELQKRVQCTPMQNKLQILIGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 136

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLTKVGKNNFRPPPKVE 196

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S+V+   P   P P   +    + + AF ++ K L  + K    E LL +   + +    
Sbjct: 197 SSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKMLSAAFKSAAVEKLLEK-NYKIHCSVH 255

Query: 263 NLSI-EDF---CRITNILTDNQ 280
           N+ I EDF    +I +IL +++
Sbjct: 256 NIEIPEDFNIAPKIESILQESK 277


>gi|254167515|ref|ZP_04874367.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
 gi|197623778|gb|EDY36341.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
          Length = 238

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 26/251 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL++  I   I + +       V+EIG G G LT  LL     +V  IE D+     
Sbjct: 5   SQNFLINPKIADYIVKEAEIKPDDIVLEIGPGKGILTDKLLEKC--EVYAIEIDKTLCEY 62

Query: 86  LKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L  I   +    RL +I  DALKVDF KF       +I+AN+PY+I + LLF  +  +  
Sbjct: 63  LSIIFQDYIKNGRLHLICGDALKVDFPKFN------KIVANIPYHISSPLLFKILEYE-- 114

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +E   L+ Q E  ER+ A+  S  YGRLSV+  +  +A ++  +    F P P+V S
Sbjct: 115 ---FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFKPVPRVDS 171

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            ++  I   +      + L +  ++ F +RRK +R         N+L +     + R E 
Sbjct: 172 AIVK-ITKKDRFCYDKDKLNEFVRKLFEQRRKKIR---------NILEEVPY-GDSRVEE 220

Query: 264 LSIEDFCRITN 274
           LS E+ C +  
Sbjct: 221 LSPEEICEVVQ 231


>gi|317182633|dbj|BAJ60417.1| dimethyladenosine transferase [Helicobacter pylori F57]
          Length = 271

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + ++EIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRSKLK--AQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|332376340|gb|AEE63310.1| unknown [Dendroctonus ponderosae]
          Length = 306

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 12/223 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  ++  + E S      TV+EIG G GN+T  LL   A+KV+  E D + 
Sbjct: 25  KQFGQHILKNPMVITSMVEKSAIRSTDTVLEIGPGTGNMTVRLLE-KAKKVVACEIDTRL 83

Query: 83  FPIL-KDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L K +   H  ++LEI+  D LK +   FFNI      +AN+PY I + L+F  +  
Sbjct: 84  VAELQKRVQGTHLQSKLEILVGDVLKRELP-FFNIC-----VANIPYQISSPLVFKLL-- 135

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               PF+    ++FQ+E  +R+ A+     Y RLSV T    +  M+  +  + F P PK
Sbjct: 136 -LHRPFFRCAVIMFQREFAQRLVAKPGDKLYCRLSVNTQLLARVDMLMKVGKNNFRPPPK 194

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           V S+V+   P   P P        +T+ AF ++ +TL  + K+
Sbjct: 195 VESSVVRIEPRNPPPPIPYIEWDGLTRIAFTRKNRTLGSAFKQ 237


>gi|193216436|ref|YP_001999678.1| dimethyladenosine transferase [Mycoplasma arthritidis 158L3-1]
 gi|226732598|sp|B3PLS2|RSMA_MYCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|193001759|gb|ACF06974.1| dimethyladenosine transferase [Mycoplasma arthritidis 158L3-1]
          Length = 258

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 16/267 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           ++I KK  GQNFL++  I K I + +  +D   VIEIG G G LT ++  L ++++I  E
Sbjct: 2   EVIAKKRFGQNFLINKAIQKAIVDVA-CVDDENVIEIGPGLGALTDLIKEL-SKELIAYE 59

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D   F  L  + +Q+ N +  I +D L   F++         +I N+PYNI + +LF  
Sbjct: 60  IDNDLFKKLL-VENQNSN-VRFINEDFLNATFDE----KKEWVVIGNIPYNITSEILFKL 113

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I   +     +  TL+ Q EV  R+ A   +  Y +L+V   +       F +    F P
Sbjct: 114 IENHS---ILKKATLMVQDEVANRLVAMPKTKEYSKLTVSVNFVGNVKKHFVVKASNFNP 170

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL----KRLGGENLLHQA 253
           +PKV S +I  I     +P  L+ +    ++ F  +RK L  +L     +      + Q 
Sbjct: 171 APKVDSAIIT-IDFYKSLPYNLKKVLAFIKQIFAFKRKMLINNLVPQWPKADVIWAIEQI 229

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           G +   RAE LS+++  ++  IL +++
Sbjct: 230 GHKQTTRAEELSLQEIMKLYEILVNSK 256


>gi|156937848|ref|YP_001435644.1| dimethyladenosine transferase [Ignicoccus hospitalis KIN4/I]
 gi|156566832|gb|ABU82237.1| dimethyladenosine transferase [Ignicoccus hospitalis KIN4/I]
          Length = 243

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 116/236 (49%), Gaps = 21/236 (8%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K  L+   I P K MGQNF ++  I++       S  G  VIEIGAG G LT  L  + +
Sbjct: 6   KAKLAELGIRPSKKMGQNFTVNPKIIEFFLSEVPS--GEVVIEIGAGLGALTAPLSKV-S 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +KVI IEKD +    LK ++ ++   +E++  DAL+++ +      +P+ ++ +LPY+I 
Sbjct: 63  KKVIAIEKDLRLCNYLKSLNLEN---VEVVCGDALELELD------APV-VVGSLPYSIS 112

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
             LL    +   W         L QKEV ER+ A+  +  YGRL+VL     +A +    
Sbjct: 113 GPLLAKLFTEGRW----NKGVFLLQKEVAERLVAEPGTKEYGRLTVLASLCCEARLGPVW 168

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            P  F+P P+V S  +  I   + +P   +   +     F +R K  R+ L   G 
Sbjct: 169 GPESFYPKPEVLSRHVILIKKRS-VP---KEFSEFLACVFSQRNKKARKVLPSCGA 220


>gi|317010201|gb|ADU80781.1| dimethyladenosine transferase [Helicobacter pylori India7]
          Length = 271

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 114/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRSKLK--AQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLVQVLFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|152989813|ref|YP_001355535.1| dimethyladenosine transferase [Nitratiruptor sp. SB155-2]
 gi|151421674|dbj|BAF69178.1| dimethyladenosine transferase [Nitratiruptor sp. SB155-2]
          Length = 278

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 26/276 (9%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           ++  KK  GQNFL D +++ KI +S  + D + ++EIG G G+LTQ LL    + VI  E
Sbjct: 2   EVAAKKKFGQNFLKDKSVVNKIIQSMPNTDNV-IVEIGPGLGDLTQELLK--KKDVIAFE 58

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKV------DFEKFFNISSPIRIIANLPYNIGT 131
            D     +L++  S      E ++  ALK+      D  K   +     ++ANLPY + T
Sbjct: 59  IDPDLCTLLQEKFS------ESLEKRALKLHCGDVLDRWKQHLVDKEYDLVANLPYYVAT 112

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   +      P  +++ ++ QKEV ++  A+     +  LSVL G   +   +  + 
Sbjct: 113 NIVLRALRD----PNCKNILVMLQKEVADKFCAKPGQREFSALSVLAGSAGEVQRVTVVK 168

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           P+ F P PKV S VI    + +      E+  KI   AF + RKTL ++L +   + LL 
Sbjct: 169 PNSFTPPPKVDSAVILIKKNRSIDDDNFETFLKI---AFRQPRKTLLKNLAQSYPKELLQ 225

Query: 252 Q----AGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           Q     G+ +N+R    S   + R+  +L +  D A
Sbjct: 226 QLFQTLGVASNIRPHEASTSIYHRLYEMLKEKIDGA 261


>gi|171186169|ref|YP_001795088.1| dimethyladenosine transferase [Thermoproteus neutrophilus V24Sta]
 gi|170935381|gb|ACB40642.1| dimethyladenosine transferase [Thermoproteus neutrophilus V24Sta]
          Length = 227

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 36/243 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++   Q+FL D +  + IAE      G+ V+E+G G G LT + L   AR V  IE D++
Sbjct: 3   RRRWSQHFLRDPSAARYIAELVPP--GLDVLEVGPGRGALT-IPLAERARTVYAIEVDRR 59

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEK--FFNISSPIRIIANLPYNIGTRLLFNWIS 139
              +L+  +   P  + +I+ DAL+V++ +  +F        ++N+PY+I + LL   ++
Sbjct: 60  LAELLRKTA---PPNVVVIEGDALEVEWPRADYF--------VSNIPYSITSPLLMK-LA 107

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P       +  Q+EV ER+ A     +YGRL+V      +  ++  + P VF P P
Sbjct: 108 RHRMP-----AVVTVQREVAERLAAAPGGENYGRLTVAVQCHYEVEVLRTLPPRVFQPPP 162

Query: 200 KVTSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQA 253
           +V S V+     L P P C+E     ++ T   F  RRKTLR    RLG   G+  ++Q 
Sbjct: 163 RVYSAVV----RLTPRPPCVEDFDGFQRFTAWLFSARRKTLR----RLGLGEGDRRVYQL 214

Query: 254 GIE 256
            +E
Sbjct: 215 SLE 217


>gi|307107026|gb|EFN55270.1| hypothetical protein CHLNCDRAFT_23464 [Chlorella variabilis]
          Length = 312

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 12/217 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +++ I + +G      V+EIG G GNLT  LL   A+KVI +E D + 
Sbjct: 31  KSKGQHILKNPLVVQSIVDKAGIKSTDVVLEIGPGTGNLTMKLLER-AKKVIAVELDPRM 89

Query: 83  FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L       P  N+L+II  D +KV    +F+I      +AN+PY I + L F  ++ 
Sbjct: 90  VLELTRRVQGTPYQNQLQIIHGDVMKVQLP-YFDIC-----VANIPYQISSPLTFKLLAH 143

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P + +  +++Q E   R+ A+   P Y RL+V T    +   +  +  + F P PK
Sbjct: 144 R---PCFRAAVIMYQHEFAMRLVAKPGDPAYSRLAVNTQLLARVNHLLKVGRNNFRPPPK 200

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           V S+V+   P     P  L     + +  FG++ KTL
Sbjct: 201 VDSSVVRIEPRNPAPPVNLLEWDGLVRLCFGRKNKTL 237


>gi|281204745|gb|EFA78940.1| dimethyladenosine transferase [Polysphondylium pallidum PN500]
          Length = 306

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 12/198 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + ++ H++    K  GQ+ L +  I+  I + S      TV+EIG G GNLT  LL    
Sbjct: 22  QKVVRHHEFQMNKTFGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLE-SC 80

Query: 71  RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI +E D +    L+   +  P  + LEII  D LKVD   +F++      +AN+PY 
Sbjct: 81  KKVIAVEVDPRMAAELQKRVATTPYASHLEIILGDFLKVDLP-YFDVC-----VANVPYQ 134

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L F  ++     P + +  L+FQKE   R+ A      Y RLSV T   +K T + 
Sbjct: 135 ISSPLTFKLLA---HRPVFRTAVLMFQKEFALRLAASPGDSLYCRLSVNTQLLSKVTHLM 191

Query: 189 DISPHVFFPSPKVTSTVI 206
            +  + F P PKV S V+
Sbjct: 192 KVGKNNFLPPPKVESAVV 209


>gi|169628224|ref|YP_001701873.1| dimethyladenosine transferase [Mycobacterium abscessus ATCC 19977]
 gi|169240191|emb|CAM61219.1| Probable dimethyladenosine transferase (16S rRNA dimethylase)
           [Mycobacterium abscessus]
          Length = 301

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 127/272 (46%), Gaps = 33/272 (12%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD- 79
           P K +GQNF+ D N +++I  +SG   G  VIE+G G G+LT  LL  GA  V  +E D 
Sbjct: 36  PTKTLGQNFVHDANTIRRIVSASGVGKGDHVIEVGPGLGSLTLGLLDKGA-AVTAVEVDP 94

Query: 80  ---QQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGT-- 131
              ++    +K+ S    NR  +I  D L +   D +       P  ++ANLPYN+    
Sbjct: 95  VLARRLPTTIKEHSHSEFNRFSVIHQDVLNLTPADIQ-----GEPTAMVANLPYNVAVPA 149

Query: 132 --RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
             R+L  + S  T       + ++ Q EV +R+TA+  S  YG  SV   +  K   +  
Sbjct: 150 LLRILTEFDSVKT-------ILVMVQSEVADRLTAEPGSRIYGVPSVKVRYFGKVKRLGT 202

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRLG 245
           +SP VF+P P+V S ++    H +         +K    +   +F +RRKT R +     
Sbjct: 203 VSPAVFWPIPRVYSGLVRIDRHADAAWPSDAGFRKELFDLIDISFAQRRKTSRNAFAEWA 262

Query: 246 GEN-----LLHQAGIETNLRAENLSIEDFCRI 272
           G        L  A I+   R E L + DF R+
Sbjct: 263 GSGDESARRLLAASIDPARRGETLDVADFARL 294


>gi|15646040|ref|NP_208222.1| dimethyladenosine transferase [Helicobacter pylori 26695]
 gi|27151553|sp|O25972|RSMA_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|2314603|gb|AAD08470.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase (ksgA)
           [Helicobacter pylori 26695]
          Length = 271

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + ++EIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  HLCEKMRSKLK--AQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                   P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 AFKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFEMLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|219849174|ref|YP_002463607.1| dimethyladenosine transferase [Chloroflexus aggregans DSM 9485]
 gi|219543433|gb|ACL25171.1| dimethyladenosine transferase [Chloroflexus aggregans DSM 9485]
          Length = 290

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 134/289 (46%), Gaps = 29/289 (10%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++  L    + P + MGQNFLLD ++L  I   +  +   TVIE+G G G LT  LL   
Sbjct: 10  IRAALRALNLRPTRGMGQNFLLDGSVLATIVAEAALVPADTVIEVGPGLGVLTWELLPRA 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLP 126
            R VI +E D++    L    S   N L ++Q D L +   D       + P +++AN+P
Sbjct: 70  GR-VICVELDRRLADRLAAEFSGRSN-LHLVQGDVLTIAPADLLARAAATPPYKLVANIP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I   LL +++ A T PP  +   LL Q EV +RI A      Y  L+    +  + ++
Sbjct: 128 YAITAPLLRHFLEA-TPPP--DLSVLLVQWEVAQRICAGPGD--YSVLAHAIQFYAEPSI 182

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR 243
           +  +    FFP+P V S ++     L P P  +     L ++ +  F   RK L  +L  
Sbjct: 183 VAHVPASSFFPAPAVDSAILRLQRRLQP-PVTVPDVNMLFRLIKAGFLHARKQLGNALP- 240

Query: 244 LGG-------------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            GG                LH+ GI+   RAE +++ ++  +   L+++
Sbjct: 241 -GGLAALGVTIPREQIMTALHKIGIDPQRRAETVTLAEWANLLAALSES 288


>gi|255636797|gb|ACU18732.1| unknown [Glycine max]
          Length = 308

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 12/217 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  ++  I E +G      ++EIG G GNLT+ LL  G +KVI IE D + 
Sbjct: 30  KSKGQHILKNPLLVDSIVEKAGVKSTDVILEIGPGTGNLTKKLLEAG-KKVIAIEIDPRM 88

Query: 83  FPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L+     + H NRL +IQ D LK +   +F+I      +AN+PY I + L F  +  
Sbjct: 89  VLELQRRFQGTPHSNRLTVIQGDVLKTELP-YFDIC-----VANIPYQISSPLTFKLLKH 142

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           +   P + +  ++FQ+E   R+ AQ     Y RL+V T    +   +  +  + F P PK
Sbjct: 143 E---PAFRAAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARVFHLLKVGRNNFRPPPK 199

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           V S+V+   P    I    +      +  F ++ KTL
Sbjct: 200 VDSSVVRIEPRKPRIEVKQKEWDGFLRICFNRKNKTL 236


>gi|229142847|ref|ZP_04271290.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST24]
 gi|228640610|gb|EEK96997.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST24]
          Length = 220

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 19/218 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + FN        + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYAN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   + +L + GI+   R E LSIE+F  ++N L
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 214


>gi|240047162|ref|YP_002960550.1| dimethyladenosine transferase [Mycoplasma conjunctivae HRC/581]
 gi|239984734|emb|CAT04708.1| Dimethyladenosine transferase [Mycoplasma conjunctivae]
          Length = 260

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 14/263 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K + KK  GQNFL D NI+KKI  +S  +    VIEIG G G LTQ ++      +   E
Sbjct: 3   KFVFKKKYGQNFLKDENIVKKIV-NSVDITNKEVIEIGPGGGALTQEIVK-KCSFLRAYE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      LK   S  P  +EII +D L  + + F   S+   ++ANLPY I + ++F  
Sbjct: 61  IDADLIENLKKKFSSSP--VEIINEDFLDTNLDFF---STKQIVLANLPYYITSNIIFKI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +S       +  + ++ Q EV +RI A+ N+  Y +LS+   +      +  I P  F P
Sbjct: 116 LSHINK---FSEIVIMVQDEVADRIVAKVNTKDYSKLSLSCQYIANVEKILKIPPSAFIP 172

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS----LKRLGGENLLHQA 253
            P V S V+ F    N       +     +++F  +RKTL  +    ++R   + +    
Sbjct: 173 QPSVNSAVVVFRVKENIDQEKFNNFLNFVKKSFAMKRKTLFNNFLTFIERDKIKQIYSLF 232

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
            ++ N+R + +S++ +  I   L
Sbjct: 233 KLDFNVRPQQISLDLYNEIFEFL 255


>gi|317181111|dbj|BAJ58897.1| dimethyladenosine transferase [Helicobacter pylori F32]
          Length = 271

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 116/243 (47%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +  ++    LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  NLCEKMRSKLK--AQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|195503410|ref|XP_002098640.1| GE23825 [Drosophila yakuba]
 gi|194184741|gb|EDW98352.1| GE23825 [Drosophila yakuba]
          Length = 306

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 18/271 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +L   A+KVI  E 
Sbjct: 21  IVFNKDFGQHILKNPLVITSMLEKAALRATDVVLEIGPGTGNMTVPMLE-RAKKVIACEI 79

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P   +L+++  D LK +   FF++      IAN+PY I + L+F 
Sbjct: 80  DTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  ER+ A+     Y RLS+ T    +  M+  +  + F 
Sbjct: 134 LL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFR 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGI 255
           P PKV S+V+   P   P P        +T+ AF ++ KTL  + K      +L +   +
Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSVLEMLEKNYKL 250

Query: 256 ETNLRAENLSIEDFCRITN---ILTDNQDIA 283
             +LR E   +ED  ++ N    + ++QD+A
Sbjct: 251 YRSLRNE--PVEDDFKMQNKVIAILEDQDMA 279


>gi|301110310|ref|XP_002904235.1| dimethyladenosine transferase [Phytophthora infestans T30-4]
 gi|262096361|gb|EEY54413.1| dimethyladenosine transferase [Phytophthora infestans T30-4]
          Length = 312

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 12/219 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P   +GQ+FL +  I+ +I   +        +E+G G GNLT  LL   A++V+ +E D 
Sbjct: 29  PNTNLGQHFLKNPMIVTQIVAKAAIRGTDVCLEVGPGTGNLTVKLLE-QAKRVVAVEFDP 87

Query: 81  QFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           +    L+     ++H N L+II  D ++V    FF++      +ANLPY I +  +F  +
Sbjct: 88  RMVAELQKRIQHTEHINHLQIIHGDVMRVQLP-FFDVC-----VANLPYQISSPFVFKLL 141

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +     P +    ++FQ+E  +R++A+     Y RLSV T    K   +  +  + F P 
Sbjct: 142 AHR---PMFRCAVVMFQEEFAKRLSAKPGDELYCRLSVNTQLLAKVDQLLKVGRNNFRPP 198

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           PKV S V+   P   P P        + +  F ++ KTL
Sbjct: 199 PKVESRVVRIEPRNPPPPVNFTEWDGMIKIIFNRKNKTL 237


>gi|260815743|ref|XP_002602632.1| hypothetical protein BRAFLDRAFT_225323 [Branchiostoma floridae]
 gi|229287943|gb|EEN58644.1| hypothetical protein BRAFLDRAFT_225323 [Branchiostoma floridae]
          Length = 306

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 134/285 (47%), Gaps = 22/285 (7%)

Query: 6   KSHSLKTILSHYKIIPK-----KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           K  S KT  +H ++  +     K  GQ+ L +  ++  + E +      TV+EIG G GN
Sbjct: 3   KVKSAKTSRTHQEVQKQGIGFNKQFGQHILKNPLVVDSMVEKAALRPTDTVLEIGPGTGN 62

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSP 118
           LT M +    +KVI  E D +    L+      P  ++L+++  DALK D   FF+I   
Sbjct: 63  LT-MKMIDRVKKVIACEIDPRLVAELQKRVQGTPSAHKLQMMVGDALKTDLP-FFDIC-- 118

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
              +AN+PY I + L+F  +      PF+    L+FQ+E  +R+ A      Y RLS+  
Sbjct: 119 ---VANIPYQISSPLVFKLL---LHRPFFRCAILMFQREFAQRLVAPPGDKLYCRLSLNV 172

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
               +   +  I  + F P PKV S+V+   P   P P   +    + + AF ++ KTL 
Sbjct: 173 QLLARVDHLMKIGRNNFRPPPKVESSVVRLEPKNPPPPINFQEWDGMVRIAFLRKNKTLG 232

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSI-EDF---CRITNILTDN 279
            + K     +LL +     +    N+ I EDF    ++T+IL  N
Sbjct: 233 AAFKNSKVLSLL-EKNYRIHCSFNNIPISEDFDMKQKVTDILETN 276


>gi|259089147|ref|NP_001158611.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss]
 gi|225705252|gb|ACO08472.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss]
          Length = 306

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 12/230 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  ++  I E +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 27  LGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDGRLVA 85

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P   +L+I+  D LK +   FF++      +ANLPY I +  +F  +    
Sbjct: 86  ELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 136

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           S+V+   P   P P   +    + + AF ++ KTL    K    E LL +
Sbjct: 197 SSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLEK 246


>gi|307152257|ref|YP_003887641.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822]
 gi|306982485|gb|ADN14366.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822]
          Length = 279

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 129/277 (46%), Gaps = 23/277 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L +I +++   +   ++EIG G G LT+ LL      V+ +E D+
Sbjct: 5   PRKRFAQHWLRSEQALSEIIQAAQLKNTDRLLEIGPGTGILTRRLLP-EVESVVAVEIDR 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVD-------FEKF--FNISSPIRIIANLPYNIGT 131
                L     Q  N L ++Q D L +D       F KF  FN     +++AN+PYNI  
Sbjct: 64  DLCKKLVKSLGQLDNFL-LLQGDILSLDLTTELAPFPKFTPFN-----KVVANIPYNITG 117

Query: 132 RLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            +L   +   + P    +E + LL QKEV ER+TA+  +  Y  LS+   +      + +
Sbjct: 118 PILEYLLGTISEPGHQKYELIVLLMQKEVAERLTAKPGTKAYSALSIRVQYLAACEWICE 177

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRL---- 244
           +    F+P PKV S V+   P     P      L  + +  F  RRK L  +LK +    
Sbjct: 178 VPARAFYPPPKVDSAVVRLRPQRVARPANNPRQLDTLVKLGFANRRKMLHNNLKGIIELE 237

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
               LL +  I    RAE LS+E +  ++N LT N +
Sbjct: 238 RLTELLEKLEINPQCRAEELSLEQWIELSNQLTINTN 274


>gi|148233697|ref|NP_001089685.1| DIM1 dimethyladenosine transferase 1-like [Xenopus laevis]
 gi|77748206|gb|AAI06333.1| MGC130862 protein [Xenopus laevis]
          Length = 306

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 124/261 (47%), Gaps = 19/261 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   +++VI  E D +   
Sbjct: 27  LGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KSKRVIACELDTRLVA 85

Query: 85  ILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+     S   ++L+++  D LK D   FF++      +ANLPY I +  +F  +    
Sbjct: 86  ELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISSPFVFKLL---L 136

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGIETNLR- 260
           S+V+   P   P P   +    + + AF ++ KTL  S K    + LL +   I  +L  
Sbjct: 197 SSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAASFKSTAVQELLEKNYRIHCSLHN 256

Query: 261 ---AENLSIEDFCRITNILTD 278
               EN SI +  +I  ILT+
Sbjct: 257 ISVPENFSIAE--KIEGILTE 275


>gi|289450164|ref|YP_003475145.1| putative dimethyladenosine transferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184711|gb|ADC91136.1| putative dimethyladenosine transferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 300

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 27/289 (9%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           +N        LS Y++ P   +GQNF+ D  +L+ +           + EIGAG GNLT 
Sbjct: 7   SNDRKDFANYLSGYRLRPNHNLGQNFIYDKGLLQAMVAEMRLPPKCEIWEIGAGTGNLTA 66

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN------ISS 117
           +L     R V  IE D      L+D  + +P ++ +I  DALK+      N      I  
Sbjct: 67  VLAEQFPR-VTAIEIDPALARPLQDRFTSNP-KVRLIFGDALKLTAADLANSEEENSIID 124

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESL--TLLFQKEVGERITAQKNSPHYGRLS 175
            I ++ NLPY I T+L+ +++       F  +L  + L Q+E  +RI     S +YG L+
Sbjct: 125 NIAVVGNLPYYISTKLIEHFLLH-----FHTALQYSFLVQQEFVDRILTPAGSKNYGPLN 179

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKR 233
           +L    T       ++   F P P V+ST+IH IP  N           +     AF +R
Sbjct: 180 ILLDNFTTIRKGMTLAATDFMPQPSVSSTLIHIIPQPNSQIDKSTWPDYRNFLHLAFAQR 239

Query: 234 RKTLRQSLKRLGGE----------NLLHQAGIETNLRAENLSIEDFCRI 272
           RKT+  +  RL  E            L   G++  +R E ++ E++  +
Sbjct: 240 RKTMHNTYARLQREYPLLNNTNDLEWLAGVGLKLQIRPEAITPENWLTL 288


>gi|325473126|gb|EGC76322.1| dimethyladenosine transferase [Treponema denticola F0402]
          Length = 293

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 32/286 (11%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAE---SSGSLD-GITVIEIGAGPGNLTQML 65
           LK++L       +K  GQNFL+D    KK  E   S  +LD G  V E+G G G +T +L
Sbjct: 18  LKSLLETLGFAMQKKFGQNFLID----KKTRENLISFLTLDKGTRVWEVGPGLGAMTYLL 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIAN 124
           L  G   +   E D+ F  +LK    ++  +   +++ D  K           P     N
Sbjct: 74  LEKGVH-LTAFEIDKGFISLLKKFFLENSKQNFRLVEGDVQKNWLPYLREHGKPDVFFGN 132

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI + L+ + + A      ++++    QKE  ERITA+  + +Y   SVL     + 
Sbjct: 133 LPYNIASDLIASTVEAGV---VFDTMLFTVQKEAAERITARPGNKNYTAFSVLCALFYEC 189

Query: 185 TMMFDISPHVFFPSPKVTSTVI------HFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            ++  I    F+P P V S  +       F  + N      +   KI +  F  RRK ++
Sbjct: 190 KIVKTIPASAFWPQPNVESAAVLFKAKKEFAEYKN-----FKLFIKIVKALFSSRRKNIK 244

Query: 239 QSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            +L      N        +L ++G+  NLRAE+L++ DF  +++I+
Sbjct: 245 NNLGSWMKSNGYGDKIDLVLERSGLSGNLRAESLALYDFLLLSDII 290


>gi|317014800|gb|ADU82236.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Helicobacter pylori Gambia94/24]
          Length = 271

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVGALPPLNSLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    L+  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  GLCEKMRARLR--AEKKPFNLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQ---NALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEIIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|256371337|ref|YP_003109161.1| ribosomal RNA adenine methylase transferase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256007921|gb|ACU53488.1| ribosomal RNA adenine methylase transferase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 279

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 137/282 (48%), Gaps = 24/282 (8%)

Query: 11  KTILSHYKII---PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           + I++H + I   P K +GQNFL D NI +K A  +        +E+G G G+LT  L  
Sbjct: 7   REIVAHLERIGLEPSKALGQNFLTDGNIARKEAALAAEAGLRVAVEVGPGLGSLTVWLAE 66

Query: 68  LGARKVIVIEKDQQFFPILKDI-SSQHPNRLEIIQDDALK--VDFEKFFNISSPIRIIAN 124
               +V+ +E D++  P L ++ +++  + + I   DAL   +  E+      P  ++AN
Sbjct: 67  Y-FDEVVALEADRRLIPALGEVLAARGIDNVRIEHADALADPLPLER-----RPSALVAN 120

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY+ G+++L   +  + W  F E + ++ Q E  +RI A   +     L V       A
Sbjct: 121 LPYHSGSQILVRLVE-EAW--FLERVVVMVQAEFADRIVAAAGTRACSALGVRLALSIDA 177

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQS 240
            +   + P VF P P V S ++       P+    P   ++  +  +  F +RR+ LR++
Sbjct: 178 HVAAKVPPVVFHPQPTVWSKLVVADRRSEPLAVTEPTTFDATVRAIRHGFERRRQMLRRA 237

Query: 241 LKRLGGENL--LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
              LG + L  L   GI+   RAE+L+++++  +   +  ++
Sbjct: 238 ---LGDDELAALDAVGIDPMRRAESLALDEWVALGRAIATSK 276


>gi|47226710|emb|CAG07869.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 311

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 17/235 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  + E +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 27  IGQHILKNPLIVNSVIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDCRLVA 85

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT-----RLLFNW 137
            L+      P  N+L+I+  D LK D   FF++      +ANLPY + T     R++F  
Sbjct: 86  ELQKRVQCTPMQNKLQILVGDVLKTDLP-FFDVC-----VANLPYQVDTFLFRRRIVFKL 139

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      PF+    L+FQ+E   R+ A      Y RLS+ T    +   +  +  + F P
Sbjct: 140 L---LHRPFFRCAVLMFQREFPMRLVAPPGDKLYCRLSINTQLLARVDHLMKVGKNNFRP 196

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            PKV S+V+   P   P P   +    + + AF ++ KTL  + K    E LL +
Sbjct: 197 PPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLEK 251


>gi|66810281|ref|XP_638864.1| dimethyladenosine transferase [Dictyostelium discoideum AX4]
 gi|74854506|sp|Q54QK7|DIMT1_DICDI RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|60467487|gb|EAL65509.1| dimethyladenosine transferase [Dictyostelium discoideum AX4]
          Length = 314

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 99/197 (50%), Gaps = 12/197 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           T   H++    K  GQ+ L +  I+  I + S      TV+EIG G GNLT  LL    +
Sbjct: 20  TAARHHEFQMNKSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLE-NCK 78

Query: 72  KVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           KVI IE D +    L+    +S +   L+II  D LKVD   +F++      +AN+PY I
Sbjct: 79  KVIAIEVDPRMAAELQKRVAASPYAQHLQIILGDFLKVDLP-YFDVC-----VANVPYQI 132

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + L F  ++     P + +  L+FQKE   R+ A+     Y RLSV T   +K T +  
Sbjct: 133 SSPLTFKLLA---HRPIFRTAVLMFQKEFALRLGAKPGDSLYCRLSVNTQLLSKVTHLMK 189

Query: 190 ISPHVFFPSPKVTSTVI 206
           +  + F P PKV S V+
Sbjct: 190 VGKNNFLPPPKVESAVV 206


>gi|312371948|gb|EFR20006.1| hypothetical protein AND_20790 [Anopheles darlingi]
          Length = 294

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           T L    I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +L    +
Sbjct: 2   TCLILLGIVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVKILE-KVK 60

Query: 72  KVIVIEKDQQFFPIL-KDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           KV+  E D +    L K +   H   +L+I+  D LK D   FF+I      +AN+PY I
Sbjct: 61  KVVACEIDPRLVAELQKRVQGTHLQPKLQILIGDVLKTDLP-FFDIC-----VANMPYQI 114

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            +  +F  +      PF+    L+FQ+E  +R+ A+     Y RLS+ T    +  M+  
Sbjct: 115 SSPFVFKLL---LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMK 171

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K+
Sbjct: 172 VGKNNFKPPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLAAAFKQ 225


>gi|58385178|ref|XP_313763.2| AGAP004465-PA [Anopheles gambiae str. PEST]
 gi|55240843|gb|EAA09266.2| AGAP004465-PA [Anopheles gambiae str. PEST]
          Length = 306

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 12/227 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +L    +KV+  E 
Sbjct: 21  IVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVKILE-KVKKVVACEI 79

Query: 79  DQQFFPIL-KDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L K +   H   +L+I+  D LK D   FF+I      +AN+PY I +  +F 
Sbjct: 80  DTRLVAELQKRVQGTHMQPKLQILIGDVLKTDLP-FFDIC-----VANMPYQISSPFVFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      PF+    L+FQ+E  +R+ A+     Y RLS+ T    +  M+  +  + F 
Sbjct: 134 LL---LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFK 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           P PKV S+V+   P   P P        +T+ AF ++ KTL  + K+
Sbjct: 191 PPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLAAAFKQ 237


>gi|317179606|dbj|BAJ57394.1| dimethyladenosine transferase [Helicobacter pylori F30]
          Length = 271

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 115/243 (47%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRSKLK--AQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +   + +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCTKDSQ---NALSVLTQAIGSATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFI---------PHLNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKDPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|170058055|ref|XP_001864755.1| dimethyladenosine transferase [Culex quinquefasciatus]
 gi|167877296|gb|EDS40679.1| dimethyladenosine transferase [Culex quinquefasciatus]
          Length = 306

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 12/240 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   + T ++   I+  K  GQ+ L +  I+  + E +       V+EIG G GN+T  +
Sbjct: 8   KKTRVHTEVAKQGIVFNKDFGQHILKNPLIVTSMLEKAALRPTDVVLEIGPGTGNMTVKI 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L    +KVI  E D +    L+      P  ++L+I+  D LK D   FF+       +A
Sbjct: 68  LE-KVKKVIACEIDPRLVAELQKRVQGTPMQSKLQILIGDVLKADLP-FFDCC-----VA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I +  +F  +      PF+    L+FQ E  +R+ A+     Y RLSV T    +
Sbjct: 121 NMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEFAQRLVAKPGDKLYCRLSVNTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  I  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K+
Sbjct: 178 VDMLMKIGKNNFRPPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLSAAFKQ 237


>gi|213511764|ref|NP_001135031.1| Probable dimethyladenosine transferase [Salmo salar]
 gi|209738164|gb|ACI69951.1| Probable dimethyladenosine transferase [Salmo salar]
          Length = 306

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 12/230 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  ++  I E +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 27  LGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDGRLVA 85

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P   +L+I+  D LK +   FF++      +ANLPY I +  +F  +    
Sbjct: 86  ELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 136

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           S+V+   P   P P   +    + + AF ++ KTL    K    E LL +
Sbjct: 197 SSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVERLLEK 246


>gi|229027888|ref|ZP_04184043.1| Dimethyladenosine transferase [Bacillus cereus AH1271]
 gi|228733402|gb|EEL84229.1| Dimethyladenosine transferase [Bacillus cereus AH1271]
          Length = 220

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 19/218 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D    F + F     + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   + +L + GI+   R E LSIE+F  ++N L
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 214


>gi|229182436|ref|ZP_04309688.1| Dimethyladenosine transferase [Bacillus cereus BGSC 6E1]
 gi|228601016|gb|EEK58584.1| Dimethyladenosine transferase [Bacillus cereus BGSC 6E1]
          Length = 220

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 19/219 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D    F + F     + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL--KKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    + +   ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDEIFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                   + +L + GI+   R E LSIE+F  ++N L 
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 215


>gi|324516507|gb|ADY46552.1| Dimethyladenosine transferase [Ascaris suum]
          Length = 308

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 120/259 (46%), Gaps = 21/259 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  I+  I E S   +  TV+E+G G GNLT  +L   A+KVI  E D +    
Sbjct: 30  GQHILKNPGIVNAIIEKSAIKNTDTVLEVGPGTGNLTVKILE-HAKKVIACEIDTRMIAE 88

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           LK      P   +LE+   D +KV++  FF++      +ANLPY I +  +F  +     
Sbjct: 89  LKKRVLGTPVQQKLEVRPGDVMKVEWP-FFDVC-----VANLPYQISSPFVFKLLLQRPL 142

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P +     L+FQKE  +R+ A+     Y RLSV      K   +  +    F P PKV S
Sbjct: 143 PRYA---VLMFQKEFADRLLAKPCEKSYCRLSVNVQLLAKVEHLMRVKRTEFRPPPKVDS 199

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR--- 260
            V+   P   P P   +    + +  F ++ KTL    K+    +LL     E N R   
Sbjct: 200 AVVRIEPRNPPPPINFQEWDGLLRIVFLRKSKTLLSIFKQKQVCDLL-----EKNYRIVC 254

Query: 261 -AENLSIEDFCRITNILTD 278
            A+N+ ++   +I N L D
Sbjct: 255 SAKNMPLDKSFKIRNKLED 273


>gi|301166053|emb|CBW25627.1| dimethyladenosine transferase [Bacteriovorax marinus SJ]
          Length = 267

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 123/258 (47%), Gaps = 23/258 (8%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ+FL   N++  I       +   +IE+G GPG LT+ L         VIEKD++F
Sbjct: 10  KNLGQHFLRSQNVIDSITNDFKE-EAQAIIEVGPGPGILTEFLAK-HELPFFVIEKDKRF 67

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGTRLLFNWI 138
              L+           I   DAL++  E FF      +  I +++NLPYN+   LL ++I
Sbjct: 68  PEYLEQFIPSE----AITLSDALEIHLEDFFEQKEINNKDIWLVSNLPYNVSVPLLISFI 123

Query: 139 SADTWPPFWESLTLLFQKEVGERITA---QKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            A    P  + +TL+FQ+EV +++ +    K +   G L VL+      +++    P  F
Sbjct: 124 KA----PQIKYMTLMFQREVADKVISFMNPKKNKSMGSLLVLSQTYFDVSVLCQAPPGAF 179

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLK-RLGGENL--- 249
            P PKV STV+ F    NP+    E    +   ++ F  +RK L   LK     E L   
Sbjct: 180 QPPPKVDSTVVSFKRRENPVIALSEFKQFESFLRKLFQFKRKQLGSVLKSHYSPEKLADA 239

Query: 250 LHQAGIETNLRAENLSIE 267
             ++G+    RAE+ S+E
Sbjct: 240 FEKSGVLRTDRAESFSLE 257


>gi|290996728|ref|XP_002680934.1| predicted protein [Naegleria gruberi]
 gi|284094556|gb|EFC48190.1| predicted protein [Naegleria gruberi]
          Length = 308

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 12/218 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+ L++  ++  + E +      TV+EIG G GN+T  LL   A+KVI IE D +
Sbjct: 25  QKSFGQHILINPGVIDHVIEKACIQPTDTVLEIGPGTGNMTVKLLQ-KAKKVIAIEVDPR 83

Query: 82  FFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               LK     +   ++L+II  DALKV+   +F++      IANLPY I + + F  ++
Sbjct: 84  MVVELKKRVQGTALESKLQIIHKDALKVELP-YFDLC-----IANLPYQISSPITFKLLA 137

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P +    L++Q+E  +R+ A+     Y RLSV T    +   +  +S + F P P
Sbjct: 138 HQ---PSFRVAYLMYQREFAQRLVAKPGDNLYCRLSVNTQLLARCDHVVKVSKNSFRPPP 194

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           KV S+++   P   P P        + +  F +R K L
Sbjct: 195 KVESSIVRIEPKNPPPPINFLEWDGLARILFQRRNKQL 232


>gi|262066560|ref|ZP_06026172.1| dimethyladenosine transferase [Fusobacterium periodonticum ATCC
           33693]
 gi|291379742|gb|EFE87260.1| dimethyladenosine transferase [Fusobacterium periodonticum ATCC
           33693]
          Length = 264

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 127/266 (47%), Gaps = 21/266 (7%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL KI E S   +   ++EIG G G LT +L+   A+K+  +E D+
Sbjct: 6   KKKYGQNFLNNKDEILNKIIEVSNIDENDEILEIGPGQGALTNLLVE-RAKKLTCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   S   N   ++  D L+VD  K+ N  +  +++AN+PY I + ++   I  
Sbjct: 65  DLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKGT--KVVANIPYYITSPIINKLIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K       L++   +  +A  +F I    F P P 
Sbjct: 122 ---KELIDEAYIMVQKEVGERICA-KAGKERSILTLAVEYYGEADYLFTIPREFFNPIPN 177

Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250
           V S  I         + N +   L    K  + AF  +RK +  +L  LG      + +L
Sbjct: 178 VDSAFISIKFYKDDRYKNKVSEDL--FFKYIKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           +Q  I  N RAEN+SI+ F  + +I 
Sbjct: 236 NQVEISENERAENISIDKFIELIDIF 261


>gi|228898795|ref|ZP_04063078.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 4222]
 gi|228905838|ref|ZP_04069736.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 200]
 gi|228937344|ref|ZP_04099991.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228950590|ref|ZP_04112725.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228956483|ref|ZP_04118280.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228963140|ref|ZP_04124310.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228970230|ref|ZP_04130890.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976800|ref|ZP_04137213.1| Dimethyladenosine transferase [Bacillus thuringiensis Bt407]
 gi|229039946|ref|ZP_04189711.1| Dimethyladenosine transferase [Bacillus cereus AH676]
 gi|229067806|ref|ZP_04201124.1| Dimethyladenosine transferase [Bacillus cereus F65185]
 gi|229107728|ref|ZP_04237365.1| Dimethyladenosine transferase [Bacillus cereus Rock1-15]
 gi|229125559|ref|ZP_04254592.1| Dimethyladenosine transferase [Bacillus cereus BDRD-Cer4]
 gi|229148451|ref|ZP_04276708.1| Dimethyladenosine transferase [Bacillus cereus m1550]
 gi|229176642|ref|ZP_04304047.1| Dimethyladenosine transferase [Bacillus cereus 172560W]
 gi|229188327|ref|ZP_04315376.1| Dimethyladenosine transferase [Bacillus cereus ATCC 10876]
 gi|228595126|gb|EEK52896.1| Dimethyladenosine transferase [Bacillus cereus ATCC 10876]
 gi|228606809|gb|EEK64225.1| Dimethyladenosine transferase [Bacillus cereus 172560W]
 gi|228634993|gb|EEK91565.1| Dimethyladenosine transferase [Bacillus cereus m1550]
 gi|228657876|gb|EEL13681.1| Dimethyladenosine transferase [Bacillus cereus BDRD-Cer4]
 gi|228675701|gb|EEL30908.1| Dimethyladenosine transferase [Bacillus cereus Rock1-15]
 gi|228715290|gb|EEL67148.1| Dimethyladenosine transferase [Bacillus cereus F65185]
 gi|228727405|gb|EEL78597.1| Dimethyladenosine transferase [Bacillus cereus AH676]
 gi|228782896|gb|EEM31061.1| Dimethyladenosine transferase [Bacillus thuringiensis Bt407]
 gi|228789465|gb|EEM37384.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228796525|gb|EEM43963.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228803173|gb|EEM49994.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228809065|gb|EEM55549.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228822302|gb|EEM68283.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228853778|gb|EEM98537.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 200]
 gi|228860820|gb|EEN05197.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 4222]
          Length = 220

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 19/218 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + FN        + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   + +L + GI+   R E LSIE+F  ++N L
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 214


>gi|300120833|emb|CBK21075.2| unnamed protein product [Blastocystis hominis]
          Length = 314

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 14/219 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K  +GQ+F+ +++++  I E SG      V+EIG G G LT  LL   A+KVI IEKD++
Sbjct: 22  KGGLGQHFIKNISVVHNIIEKSGIKPTDIVLEIGPGAGILTMELLK-KAKKVIAIEKDER 80

Query: 82  FF-PILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               I K +  +++ + LEI+  D LKV+   +F++      ++N+PY I + ++F  + 
Sbjct: 81  MVHEIQKKVQGTEYESHLEIVYGDFLKVEL-PYFDLC-----VSNVPYVISSGVVFKLLQ 134

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P + +  L+FQ+E  +R+ A+     Y R+SV T    +   +  +  + F P P
Sbjct: 135 HR---PIFRAAILMFQEEFTQRLCAKPGDNMYSRISVNTQLLARTQQLLKVGRNNFNPPP 191

Query: 200 KVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTL 237
           KV S V    P LNP P    E    +    F ++ KTL
Sbjct: 192 KVESRVCRIEP-LNPRPEVNFEEWDGLVNICFHRKNKTL 229


>gi|289740727|gb|ADD19111.1| ribosomal RNA adenine dimethylase [Glossina morsitans morsitans]
          Length = 306

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 12/226 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  ++  + E +       ++EIG G GN+T  +L    +KVI  E 
Sbjct: 21  ILFNKEFGQHILKNPLVITSMLEKAAIRSTDVILEIGPGTGNMTVRMLE-RCKKVIACEI 79

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P   +L+I+  D LK D   FF++      IAN+PY I + L+F 
Sbjct: 80  DTRLAAELQKRVQATPMQYKLQILIGDFLKADLP-FFDLC-----IANIPYQISSPLIFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  +R+ A+     Y RLSV T    +  M+  +  + F 
Sbjct: 134 LL---LHRPLFRCAVLMFQREFAQRLVAKPGEKLYCRLSVNTQLLARVDMLMKVGKNNFK 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           P PKV S+V+   P   P P        +T+ AF ++ KTL  + K
Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRVAFLRKNKTLAAAFK 236


>gi|330844811|ref|XP_003294306.1| hypothetical protein DICPUDRAFT_84787 [Dictyostelium purpureum]
 gi|325075260|gb|EGC29171.1| hypothetical protein DICPUDRAFT_84787 [Dictyostelium purpureum]
          Length = 315

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 12/197 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           T   H++    K  GQ+ L +  I+  I E +      TV+EIG G GNLT  LL    +
Sbjct: 21  TAARHHEFQMNKSYGQHLLKNPLIIDSIVEKAQLKSTDTVLEIGPGTGNLTMKLLE-NCK 79

Query: 72  KVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           KVI +E D +    L+    +S +   L+II  D LKVD   +F++      +AN+PY I
Sbjct: 80  KVIAVEVDPRMAAELQKRVAASPYAQHLQIILGDFLKVDLP-YFDVC-----VANVPYQI 133

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + L F  ++     P + +  L+FQ+E   R+ A+     Y RLSV T   +K T +  
Sbjct: 134 SSPLTFKLLA---HRPIFRTAVLMFQREFALRLAAKPGDSLYCRLSVNTQLLSKVTHLMK 190

Query: 190 ISPHVFFPSPKVTSTVI 206
           +  + F P PKV S V+
Sbjct: 191 VGKNNFLPPPKVESAVV 207


>gi|195589589|ref|XP_002084534.1| GD14323 [Drosophila simulans]
 gi|194196543|gb|EDX10119.1| GD14323 [Drosophila simulans]
          Length = 381

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 131/291 (45%), Gaps = 54/291 (18%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ ++  Y++  +K + QNFL+D  +  KI                             
Sbjct: 104 TIRELVKLYRLQARKQLSQNFLMDERLTDKI----------------------------- 134

Query: 69  GARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIAN 124
              +++++EKD +F     +LK+ +S    + +I  DD L+ + E+   + S  I +I N
Sbjct: 135 ---RLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIHLIGN 191

Query: 125 LPYNIGTRLLFNWIS--ADTWPPFWE---SLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           LP+ I TRLL NW+   A     F      +TL FQ+EV ERI A        RLSV++ 
Sbjct: 192 LPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMSQ 251

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKITQEAFGKRRKT 236
             T+  M F I    F P P+V   V+  IP   P   +P  L  ++++ +  F  R+K 
Sbjct: 252 VWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHL--VERVVRHIFSMRQKY 309

Query: 237 LRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            R+    L          + L  +A ++  LR   L++E   R+  + +++
Sbjct: 310 CRRGYGTLLPPEDREEVAQKLFERAEVQDTLRPFELTVEQCLRLAEVYSEH 360


>gi|194906638|ref|XP_001981404.1| GG11635 [Drosophila erecta]
 gi|190656042|gb|EDV53274.1| GG11635 [Drosophila erecta]
          Length = 306

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 16/271 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +L   A+KVI  E 
Sbjct: 21  IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P   +L+++  D LK +   FF++      IAN+PY I + L+F 
Sbjct: 80  DTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  ER+ A+     Y RLS+ T    +  M+  +  + F 
Sbjct: 134 LL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFK 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGI 255
           P PKV S+V+   P   P P        +T+ AF ++ KTL  + K      +L +   +
Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSVLEMLEKNYKL 250

Query: 256 ETNLRAENLSIEDFCRITNILT--DNQDIAI 284
             +LR E +  +DF     +++  + QD+A+
Sbjct: 251 YRSLRNEPVE-DDFKMQDKVISILEEQDMAV 280


>gi|307211915|gb|EFN87842.1| Probable dimethyladenosine transferase [Harpegnathos saltator]
          Length = 306

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 122/263 (46%), Gaps = 25/263 (9%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I++ + E +       ++E+G G GN+T  LL   A+KVI  E D + 
Sbjct: 25  KDFGQHILKNPLIIQNMVEKAALRPTDVILEVGPGTGNMTIKLLE-KAKKVIAYEVDPRL 83

Query: 83  FPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L+     + +  +LEI+  D LK D   FF++      +AN+PY I + L+F  +  
Sbjct: 84  VAELQKRVQGTLYQPKLEIMVGDVLKSDLP-FFDLC-----VANIPYQISSPLVFKLL-- 135

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P +    L+FQ+E  ER+ A+     Y RLS+ T    +  M+  +  + F P PK
Sbjct: 136 -LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFKPPPK 194

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           V S V+   P     P   +    +T+ AF ++ KTL  + K+             T + 
Sbjct: 195 VESNVVRIEPRNPSPPINYQEWDSLTRIAFLRKNKTLSAAFKQ----------NTVTTML 244

Query: 261 AENLSIEDFCRITN-ILTDNQDI 282
            +N  I   C + N +  DN DI
Sbjct: 245 EKNYKIH--CSLNNKVFPDNFDI 265


>gi|225717560|gb|ACO14626.1| Probable dimethyladenosine transferase [Caligus clemensi]
          Length = 313

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 14/216 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  ++  I E SG     TV+EIG G GNLT  LL    ++VIV E D +   
Sbjct: 34  LGQHILKNPAVVDSIIEKSGLRPTDTVLEIGPGTGNLTAKLLD-KVKRVIVCEVDPRMVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P   +LEI+  DA+K +   FF++      +AN+PY I + L+F  +    
Sbjct: 93  ELQKRFQHSPFKPKLEILVGDAIKTELP-FFDVC-----VANVPYQISSPLVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A      Y RLS+ T   +    +  +  + F P PKV 
Sbjct: 144 HRPFFRCAVLMFQREFAMRLIAAPGDKLYCRLSINTQLLSTVHHLLKVGRNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237
           S+V+  I H NP P    +    +T+  F ++ KTL
Sbjct: 204 SSVVR-IEHKNPPPPINFKEWDGLTRICFVRKNKTL 238


>gi|229021649|ref|ZP_04178236.1| Dimethyladenosine transferase [Bacillus cereus AH1272]
 gi|228739652|gb|EEL90061.1| Dimethyladenosine transferase [Bacillus cereus AH1272]
          Length = 220

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 19/219 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D    F + F     + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVKDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                   + +L + GI+   R E LSIE+F  ++N L 
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 215


>gi|291280249|ref|YP_003497084.1| dimethyladenosine transferase [Deferribacter desulfuricans SSM1]
 gi|290754951|dbj|BAI81328.1| dimethyladenosine transferase [Deferribacter desulfuricans SSM1]
          Length = 269

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 125/265 (47%), Gaps = 24/265 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV-IEKD- 79
           KK +GQ+FL + + + +I       +   V+EIG G G LT  +L  G    +V I+ D 
Sbjct: 16  KKSLGQHFLTNKHFISEIVSFLDLKEHDNVVEIGPGCGVLTYEILQKGVNLTVVDIDSDV 75

Query: 80  ----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
                ++    K++   + + +EI +DD               ++   NLPYN+  ++  
Sbjct: 76  CDFLSRYLYYFKNLKIINKDFIEITRDDL----------PDGKLKFAGNLPYNVSVKIFE 125

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +    +    E +T +FQKEV +R+T++  S  Y  LS+   +      + +IS   F
Sbjct: 126 KCVD---FIDDIELMTFMFQKEVADRLTSEPCSKTYSSLSIFAQYYFNIEKIRNISGANF 182

Query: 196 FPSPKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251
           +P+ KVTSTV+ FIP   + N +    +         F  +RKTL+ +L  L  E L   
Sbjct: 183 WPNTKVTSTVLKFIPRERYFNDLN-KEKRFFDFVMSCFKSKRKTLKNNLSYLSKEQLEKI 241

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
                  +RAE LS++DF ++  ++
Sbjct: 242 DKHFGEKIRAEQLSLDDFIKLFEMI 266


>gi|228912781|ref|ZP_04076429.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925295|ref|ZP_04088392.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931544|ref|ZP_04094451.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943848|ref|ZP_04106234.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228983297|ref|ZP_04143511.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089173|ref|ZP_04220455.1| Dimethyladenosine transferase [Bacillus cereus Rock3-42]
 gi|229119704|ref|ZP_04248966.1| Dimethyladenosine transferase [Bacillus cereus 95/8201]
 gi|229136888|ref|ZP_04265516.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST26]
 gi|229153820|ref|ZP_04281951.1| Dimethyladenosine transferase [Bacillus cereus ATCC 4342]
 gi|229194432|ref|ZP_04321236.1| Dimethyladenosine transferase [Bacillus cereus m1293]
 gi|228589022|gb|EEK47036.1| Dimethyladenosine transferase [Bacillus cereus m1293]
 gi|228629624|gb|EEK86320.1| Dimethyladenosine transferase [Bacillus cereus ATCC 4342]
 gi|228646553|gb|EEL02759.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST26]
 gi|228663729|gb|EEL19307.1| Dimethyladenosine transferase [Bacillus cereus 95/8201]
 gi|228694136|gb|EEL47817.1| Dimethyladenosine transferase [Bacillus cereus Rock3-42]
 gi|228776411|gb|EEM24763.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228815805|gb|EEM62040.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828096|gb|EEM73823.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834342|gb|EEM79882.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846841|gb|EEM91845.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 220

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 19/218 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D    F + F     + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   + +L + GI+   R E LSIE+F  ++N L
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 214


>gi|208435299|ref|YP_002266965.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter
           pylori G27]
 gi|226732586|sp|B5Z950|RSMA_HELPG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|208433228|gb|ACI28099.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter
           pylori G27]
          Length = 271

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +  ++    LK  + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  NLCEKMRARLK--AQKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +   + +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCTKDSQ---NALSVLVHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L   P   E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|257792392|ref|YP_003182998.1| ribosomal RNA adenine methylase transferase [Eggerthella lenta DSM
           2243]
 gi|257476289|gb|ACV56609.1| ribosomal RNA adenine methylase transferase [Eggerthella lenta DSM
           2243]
          Length = 347

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 137/335 (40%), Gaps = 82/335 (24%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLG 69
           + +L  + +  K  +GQNFL++  IL+KI   +  +    V+E+G G G LT  LL ++G
Sbjct: 14  RAVLEAHGLSTKYSLGQNFLINDAILQKIVALADLVPDDYVLEVGPGIGTLTVALLKSVG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL---KVDF----------------- 109
             +V+ +E+D     +L +  S   +R  ++  DAL     DF                 
Sbjct: 74  --RVLSVERDPDLPAVLAETLSPWADRFALLNKDALDLCSADFQSAEPLDAAASRGARSR 131

Query: 110 -----------------------EKFFNISSPIRI-----IANLPYNIGTRLLFNWISAD 141
                                  E   +++ P+R+     +ANLPY +   ++ ++    
Sbjct: 132 GEAQGSRTEVRSAFALPTISGTTETLADVAGPMRLLPNKLVANLPYAVAATVVLDYFERF 191

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 ES T++ QKEV +R+ A   + +YG  +V      +    F + P  FFP P+V
Sbjct: 192 AS---LESATVMVQKEVADRMAASPGTKNYGAYTVKLRLYAEPAGRFAVGPGNFFPPPRV 248

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEA-----------FGKRRKTLRQSLKR-LGGEN- 248
            S V+     LN  P   +    +  +A           F  RRKTL  S K    G   
Sbjct: 249 ESAVL----RLNRRPVFDDQGVPLDADAIAAACTMAEAAFATRRKTLSNSCKTYFAGRGP 304

Query: 249 -----------LLHQAGIETNLRAENLSIEDFCRI 272
                      L  +AGI+  LR E L + +F R+
Sbjct: 305 QGAAVIARLPQLFERAGIDPRLRGETLDLPEFVRL 339


>gi|168033422|ref|XP_001769214.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679479|gb|EDQ65926.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 302

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 133/281 (47%), Gaps = 42/281 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD-Q 80
           +K  GQ+ L +  +++ I + +G      V+EIG G GNLT  LL +  +KV+ +E D +
Sbjct: 22  QKSKGQHILKNPLLVQSIVQKAGLKSTDIVLEIGPGTGNLTMKLLEV-CKKVVAVELDPR 80

Query: 81  QFFPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               + + +  + + N+L++IQ D LK +   +F++      +AN+PY I + + F  +S
Sbjct: 81  MVLEVTRRVQGTPYANKLQVIQGDILKTELP-YFDVC-----VANVPYQISSPITFKLLS 134

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P +    ++FQKE  +R+ AQ     + RLSV T    +   +  +  + F P P
Sbjct: 135 HR---PLFRCAVIMFQKEFAQRLVAQPGDSLFCRLSVNTQLLARVFHLLKVGKNNFRPPP 191

Query: 200 KVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLR-------------------Q 239
           KV S+V+   P  NP+P    +    + +  F ++ KTL                    Q
Sbjct: 192 KVDSSVVRIEPR-NPLPPINFKEWDGLIRLCFNRKNKTLGSIFRQKAVLALIEKNYKTFQ 250

Query: 240 SLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRI 272
           +L+  GG          +L + G E   R+  L+ +DF R+
Sbjct: 251 ALQEAGGNTFFKEKCLGVLAEGGYEDK-RSSKLTQDDFLRL 290


>gi|27151490|sp|Q95KJ0|DIMT1_MACFA RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=DIM1 dimethyladenosine transferase 1-like;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|13874484|dbj|BAB46866.1| hypothetical protein [Macaca fascicularis]
          Length = 313

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 121/260 (46%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELRKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E+  R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQRELALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 264 IIIPEDFSIAD--KIQQILT 281


>gi|170016041|ref|NP_001116194.1| DIM1 dimethyladenosine transferase 1-like [Xenopus (Silurana)
           tropicalis]
 gi|169641837|gb|AAI60444.1| LOC779588 protein [Xenopus (Silurana) tropicalis]
          Length = 306

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 19/261 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A++V+  E D +   
Sbjct: 27  LGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRVVACELDTRLVA 85

Query: 85  ILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+     S   ++L+++  D LK D   FF++      +ANLPY I +  +F  +    
Sbjct: 86  ELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISSPFVFKLL---L 136

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 137 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVGKNNFRPPPKVE 196

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGIETNLR- 260
           S+V+   P   P P   +    + + AF ++ KTL  + K    + LL +   I  +L  
Sbjct: 197 SSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLEKNYKIHCSLHN 256

Query: 261 ---AENLSIEDFCRITNILTD 278
               EN SI +  +I  +LT+
Sbjct: 257 ISVPENFSIAE--KIEGVLTE 275


>gi|157103251|ref|XP_001647892.1| dimethyladenosine transferase [Aedes aegypti]
 gi|157126646|ref|XP_001654689.1| dimethyladenosine transferase [Aedes aegypti]
 gi|108873212|gb|EAT37437.1| dimethyladenosine transferase [Aedes aegypti]
 gi|108884724|gb|EAT48949.1| dimethyladenosine transferase [Aedes aegypti]
          Length = 306

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 124/263 (47%), Gaps = 13/263 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +K   + T ++   I+  K  GQ+ L +  I+  + + +G      V+EIG G GN+T  
Sbjct: 7   DKKSRVHTDVAKQGIVFNKDFGQHILKNPLIVTSMLDKAGLRPTDVVLEIGPGTGNMTVK 66

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122
           LL    +KV+  E D +    L+      P  ++L+I+  D LK D   FF+       +
Sbjct: 67  LLE-KVKKVVACEIDPRLVAELQKRVQGTPMQSKLQILIGDVLKADLP-FFDCC-----V 119

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           AN+PY I +  +F  +      PF+    L+FQ E  +R+ A+     Y RLSV T    
Sbjct: 120 ANMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEFAQRLVAKPGDKLYCRLSVNTQLLA 176

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +  M+  +  + F P PKV S+V+   P     P        +T+ AF ++ KTL  + K
Sbjct: 177 RVDMLMKVGKNNFRPPPKVESSVVRIEPRNPSPPINYTEWDGLTRIAFLRKNKTLAAAFK 236

Query: 243 RLGGENLLHQA-GIETNLRAENL 264
           +      L Q   ++ +L+ ++L
Sbjct: 237 QTSVMTALEQNFKMQCSLKNQDL 259


>gi|319789994|ref|YP_004151627.1| dimethyladenosine transferase [Thermovibrio ammonificans HB-1]
 gi|317114496|gb|ADU96986.1| dimethyladenosine transferase [Thermovibrio ammonificans HB-1]
          Length = 250

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 15/257 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+FL D N++++IA++        V+EIG G G LT+ LL    + +  IE D  
Sbjct: 4   KKRYGQHFLKDRNVIRRIADALPITSDDVVVEIGPGGGALTEELLARNPKALYAIEIDPD 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +   LK+   +  +R+ +   DA   DF +   +   ++   NLPYN+ T ++ N ++  
Sbjct: 64  WVDYLKE---RFKDRITVFNADATTFDFSQ---LGRGLKFFGNLPYNVSTAIIRNLLNHR 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +    +     + QKEV  R+TA      +G L  L         +FD+ P  F P PKV
Sbjct: 118 SA---FSGGVFMVQKEVAGRLTATGGK-EFGYLPALLQRFFTVKPLFDVPPGAFKPPPKV 173

Query: 202 TSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-QAGIETNL 259
            STV+   P    +    L   +   + AF  RRK L++++  + GE   H Q  +E   
Sbjct: 174 WSTVVKLEPKEPELSDEELLPFENFLKMAFSHRRKKLKKNIP-VKGELPPHLQPLLEK-- 230

Query: 260 RAENLSIEDFCRITNIL 276
           RAE L+ E    +   L
Sbjct: 231 RAEELTGEQLLELFRAL 247


>gi|294783118|ref|ZP_06748442.1| dimethyladenosine transferase [Fusobacterium sp. 1_1_41FAA]
 gi|294479996|gb|EFG27773.1| dimethyladenosine transferase [Fusobacterium sp. 1_1_41FAA]
          Length = 264

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 127/266 (47%), Gaps = 21/266 (7%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL +I E S   +   ++EIG G G LT +L+   A+K+  +E D+
Sbjct: 6   KKKYGQNFLNNKDEILNQIIEVSNIDENDEILEIGPGQGALTNLLVE-RAKKLTCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   S   N   ++  D L+VD  K+ N  +  +++AN+PY I + ++   I  
Sbjct: 65  DLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKGT--KVVANIPYYITSPIINKLIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K       L++   +  +A  +F I    F P P 
Sbjct: 122 ---KELIDEAYIMVQKEVGERICA-KAGKERSILTLAVEYYGEADYLFTIPREFFNPVPN 177

Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250
           V S  I         + N I   L    K  + AF  +RK +  +L  LG      + +L
Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYIKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           +Q  I  N RAEN+SI+ F  + +I 
Sbjct: 236 NQVEISENERAENISIDKFIELIDIF 261


>gi|228918992|ref|ZP_04082372.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840641|gb|EEM85902.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 220

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 19/219 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + FN        + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVKDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                   + +L + GI+   R E LSIE+F  ++N L 
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 215


>gi|197246216|gb|AAI69134.1| hypothetical protein LOC779588 [Xenopus (Silurana) tropicalis]
          Length = 306

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 19/261 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A++V+  E D +   
Sbjct: 27  LGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRVVACELDTRLVA 85

Query: 85  ILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+     S   ++L+++  D LK D   FF++      +ANLPY I +  +F  +    
Sbjct: 86  ELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISSPFVFKLL---L 136

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 137 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVGKNNFRPPPKVE 196

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGIETNLR- 260
           S+V+   P   P P   +    + + AF ++ KTL  + K    + LL +   I  +L  
Sbjct: 197 SSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLEKNYKIHCSLHN 256

Query: 261 ---AENLSIEDFCRITNILTD 278
               EN SI +  +I  +LT+
Sbjct: 257 ISVPENFSIAE--KIEGVLTE 275


>gi|170595215|ref|XP_001902290.1| Probable dimethyladenosine transferase [Brugia malayi]
 gi|158590104|gb|EDP28858.1| Probable dimethyladenosine transferase, putative [Brugia malayi]
          Length = 306

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 13/193 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  I+  I E S      TV E+G+G GNLT  LL   A+KVI  E D++    
Sbjct: 28  GQHILKNPGIVNAIVEKSAIKSTDTVFEVGSGTGNLTVALLG-KAKKVIACEIDRRMIAE 86

Query: 86  LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           LK   I + +  +LE+ Q D +K ++  FF++      +ANLPY I +  +F  +     
Sbjct: 87  LKKRVIGTSNQQKLEVRQGDVIKTEWP-FFDVC-----VANLPYQISSPFVFKLLLQRPL 140

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P +     L+FQKE  +R+ A+  +  Y RLSV   +  +   +  +    F P PKV S
Sbjct: 141 PRYA---VLMFQKEFADRLLAKPGNKLYCRLSVNVQFLAQVEHLMKVKRTEFRPPPKVDS 197

Query: 204 TVIHFIPHLNPIP 216
            V+   P  NP P
Sbjct: 198 AVVRIAPR-NPPP 209


>gi|156393635|ref|XP_001636433.1| predicted protein [Nematostella vectensis]
 gi|156223536|gb|EDO44370.1| predicted protein [Nematostella vectensis]
          Length = 308

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 12/214 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  + + +G     TV+EIG G GNLT  LL   ++KVI  E D +    
Sbjct: 30  GQHILKNPLVITSLVDKAGLRSTDTVLEIGPGTGNLTVKLLE-QSKKVIACELDPRMVAE 88

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+      P  ++L ++  D LK D   FF++      +ANLPY I +  +F  +     
Sbjct: 89  LQKRVQGTPLQSKLSVMVGDVLKTDLP-FFDVC-----VANLPYQISSPFVFKLL---LH 139

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            PF+    L+FQ+E  +R+ A+     Y RLS+ T    +   +  +  + F P PKV S
Sbjct: 140 RPFFRCAVLMFQREFAQRLIAKPGDKLYCRLSINTQLLARVDHIMKVGKNNFRPPPKVES 199

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           +V+   P   P P   +    + + AF ++ KTL
Sbjct: 200 SVVRIEPKNPPPPVNFKEWDGLVRIAFVRKNKTL 233


>gi|116063351|gb|AAI23078.1| LOC779588 protein [Xenopus (Silurana) tropicalis]
          Length = 304

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 19/261 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A++V+  E D +   
Sbjct: 25  LGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRVVACELDTRLVA 83

Query: 85  ILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+     S   ++L+++  D LK D   FF++      +ANLPY I +  +F  +    
Sbjct: 84  ELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISSPFVFKLL---L 134

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 135 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVGKNNFRPPPKVE 194

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-AGIETNLR- 260
           S+V+   P   P P   +    + + AF ++ KTL  + K    + LL +   I  +L  
Sbjct: 195 SSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLEKNYKIHCSLHN 254

Query: 261 ---AENLSIEDFCRITNILTD 278
               EN SI +  +I  +LT+
Sbjct: 255 ISVPENFSIAE--KIEGVLTE 273


>gi|289704908|ref|ZP_06501325.1| dimethyladenosine transferase [Micrococcus luteus SK58]
 gi|289558404|gb|EFD51678.1| dimethyladenosine transferase [Micrococcus luteus SK58]
          Length = 307

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 34/291 (11%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   + P K  GQNF++D N +++I +++       V+EIG G G+LT  LL
Sbjct: 16  AADVRRIAAELDLRPTKQWGQNFVIDPNTIRRIVQAADVTADEHVLEIGPGLGSLTLGLL 75

Query: 67  TLGARKVIVIEKD-----------QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN- 114
              A  V  +E D            +F P  +D        L ++  DA+ +  +     
Sbjct: 76  DAAA-AVTAVEIDPVTAARLPRTAAEFRPGAEDA-------LAVLHADAMTLSEQALAEV 127

Query: 115 -----ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
                +  P  ++ANLPYN+   +L + ++    P     L ++ Q+EV +R+ A   S 
Sbjct: 128 RPAAAVGGPTALVANLPYNVAVPVLLHALA--VLPGLRHGL-VMVQEEVADRLAAGPGSK 184

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQE 228
            YG  S    W         +   VF+P+P++ S ++ F     P        +  +   
Sbjct: 185 VYGVPSAKAAWYADVRKAGTVGTQVFWPAPRIHSGLVAFTRREPPTGGAPRREVFAVVDA 244

Query: 229 AFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           AF +RRKTLR +L    G     E+ L  AG++   R E L I  F RI  
Sbjct: 245 AFAQRRKTLRAALASWAGSPQAAEDALVAAGVDPRARGEALDIAAFARIAE 295


>gi|21358017|ref|NP_651660.1| CG11837 [Drosophila melanogaster]
 gi|195574637|ref|XP_002105291.1| GD21406 [Drosophila simulans]
 gi|27151493|sp|Q9VAQ5|DIMT1_DROME RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|7301735|gb|AAF56847.1| CG11837 [Drosophila melanogaster]
 gi|16769516|gb|AAL28977.1| LD35950p [Drosophila melanogaster]
 gi|194201218|gb|EDX14794.1| GD21406 [Drosophila simulans]
 gi|220944428|gb|ACL84757.1| CG11837-PA [synthetic construct]
 gi|220954304|gb|ACL89695.1| CG11837-PA [synthetic construct]
          Length = 306

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +L   A+KVI  E 
Sbjct: 21  IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P   +L+++  D LK +   FF++      IAN+PY I + L+F 
Sbjct: 80  DTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  ER+ A+     Y RLS+ T    +  M+  +  + F 
Sbjct: 134 LL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFR 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           P PKV S+V+   P   P P        +T+ AF ++ KTL  + K
Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236


>gi|195394465|ref|XP_002055863.1| GJ10534 [Drosophila virilis]
 gi|194142572|gb|EDW58975.1| GJ10534 [Drosophila virilis]
          Length = 306

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +L   A+KVI  E 
Sbjct: 21  IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P   +L+++  D LK D   FF++      IAN+PY I + L+F 
Sbjct: 80  DTRLAAELQKRVQATPLQPKLQVLIGDFLKADLP-FFDLC-----IANVPYQISSPLIFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  +R+ A+     Y RLS+ T    +  M+  +  + F 
Sbjct: 134 LL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFK 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           P PKV S+V+   P   P P        +T+ AF ++ KTL  + K
Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236


>gi|302830902|ref|XP_002947017.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f.
           nagariensis]
 gi|300268061|gb|EFJ52243.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f.
           nagariensis]
          Length = 463

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 138/336 (41%), Gaps = 73/336 (21%)

Query: 9   SLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           ++ T+ + Y  +I  KK +GQNFL D  +L+ I  ++G      V+E+G G GNLT+ LL
Sbjct: 92  AISTVANLYEDRIKAKKSLGQNFLTDDAVLQDIVAAAGVGPQDLVLEVGPGTGNLTKHLL 151

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------NISSP- 118
             GA  V  +EKD   +  L+      P RL +I  DALKV  E          +   P 
Sbjct: 152 ASGA-GVTAVEKDDTLYGRLQKEYGDVP-RLTLIHGDALKVGLEDIIRGMMLQQDRQDPA 209

Query: 119 --------------------------------------IRIIANLPYNIGTRLLFNWISA 140
                                                 ++++ANLPYNI   LL   +  
Sbjct: 210 ASSESVSSAESALASTSTSGASSRGYKPGSSAAAGGRKVKVVANLPYNITKDLLTLLLPL 269

Query: 141 DTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLT----------GW--RTKATMM 187
             W      L ++ Q E   R+T      P +   ++ T          GW  R ++   
Sbjct: 270 GDW---ISDLHIMIQHEAAVRLTEHTPGGPEWRAANIRTLFYCRPRHGGGWAGRGRSRYR 326

Query: 188 FDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           F IS   + P P V   ++ F    P   P      +   +  +AF +RRK +R SL+ L
Sbjct: 327 FRISRLKYDPVPGVDGALVTFSLIPPSARPAVPSERAFHSLVVKAFSERRKKMRNSLQPL 386

Query: 245 GG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G    E  L + G+  + RA++LS+E F   +  L
Sbjct: 387 YGAEQVEAALSECGLNADSRAQDLSLEQFVAFSRQL 422


>gi|237739754|ref|ZP_04570235.1| dimethyladenosine transferase [Fusobacterium sp. 2_1_31]
 gi|229423362|gb|EEO38409.1| dimethyladenosine transferase [Fusobacterium sp. 2_1_31]
          Length = 264

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 127/266 (47%), Gaps = 21/266 (7%)

Query: 22  KKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL + + IL KI E S   +   ++EIG G G LT +L+   A+K+  +E D+
Sbjct: 6   KKKYGQNFLNNKDEILNKIIEVSNIDENDEILEIGPGQGALTNLLVE-RAKKLTCVEIDK 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   S   N   ++  D L+VD  K+ N  +  +++AN+PY I + ++   I  
Sbjct: 65  DLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKGT--KVVANIPYYITSPIINKLIEN 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                  +   ++ QKEVGERI A K       L++   +  +A  +F I    F P P 
Sbjct: 122 ---KELIDEAYIMVQKEVGERICA-KAGKERSILTLAVEYYGEADYLFTIPREFFNPVPN 177

Query: 201 VTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLL 250
           V S  I         + N I   L    K  + AF  +RK +  +L  LG      + +L
Sbjct: 178 VDSAFISIKFYKDDRYKNKISEDL--FFKYIKAAFSNKRKNIVNNLATLGYSKDKIKEIL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
           ++  I  N RAEN+SI+ F  + +I 
Sbjct: 236 NRVEISENERAENISIDKFIELIDIF 261


>gi|166158346|ref|NP_001099878.2| probable dimethyladenosine transferase [Rattus norvegicus]
 gi|165971279|gb|AAI58730.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Rattus
           norvegicus]
          Length = 313

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 19/261 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPLASKLQVLVGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQREFALRLAAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       ++ 
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQN 263

Query: 258 NLRAENLSIEDFCRITNILTD 278
            +  E+ SI D  +I  ILT+
Sbjct: 264 TVIPEDFSIAD--KIQQILTN 282


>gi|13508418|ref|NP_110368.1| dimethyladenosine transferase [Mycoplasma pneumoniae M129]
 gi|2500512|sp|P75113|RSMA_MYCPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|1673824|gb|AAB95811.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase
           [Mycoplasma pneumoniae M129]
 gi|301633390|gb|ADK86944.1| dimethyladenosine transferase [Mycoplasma pneumoniae FH]
          Length = 263

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 127/257 (49%), Gaps = 17/257 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKD 79
           P + +GQNF +D +++ K      SL+   +IE+G G G LT+ LL L      I ++K 
Sbjct: 6   PSRKLGQNFTVDQSVIAKTCRLIKSLNPTALIEVGPGKGALTKALLKLQLPYHGIELDKR 65

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              + ++ +I ++     ++   DALK + +++F  + P+ +  N+PY+I + L+ N+++
Sbjct: 66  LAEYLLVNEILTEE----QLTIGDALKQNLDQYFPDTIPL-LCGNIPYSISSPLIANFLA 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           +       +   L+ Q E G+R+ A  NSP+Y    V   +  +   +F I    F P P
Sbjct: 121 SK-----LQQFVLVCQWEFGQRLVAPVNSPNYSAFGVFCQYHLQIKSVFKIDKVAFKPKP 175

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGI 255
           +V S ++  +    P         +  ++ F +RRK L  +LK+L       N+L Q  +
Sbjct: 176 QVDSVLM--LLKKKPQVAYEAHFGRFLKQCFHQRRKLLVNNLKQLLPPTLLTNVLQQQDL 233

Query: 256 ETNLRAENLSIEDFCRI 272
              +RA+ L+     R+
Sbjct: 234 AATVRAQELTPTQLFRL 250


>gi|50955322|ref|YP_062610.1| dimethyladenosine transferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|62900513|sp|Q6ADP1|RSMA_LEIXX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|50951804|gb|AAT89505.1| dimethyladenosine transferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 280

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 133/267 (49%), Gaps = 21/267 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P K +GQNF++D N +++I   +G   G  V+E+G G G+LT  LL  GAR V+ +E 
Sbjct: 21  VAPTKRLGQNFVIDANTVRRIVRVAGVEAGEVVVEVGPGLGSLTLGLLEAGAR-VVAVEI 79

Query: 79  DQQF---FPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           D +     P+ +  ++ +   RL ++  DAL V          P R++ANLPYN+   +L
Sbjct: 80  DGRLAERLPLTVAQLAPEAAGRLTVVHSDALAVTELP----ERPGRLVANLPYNVSVPVL 135

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            + +      P   S  ++ Q EVG+RI A   S  YG  SV   W         +S  +
Sbjct: 136 LHLLERV---PSLRSGVVMVQAEVGQRIAAGPGSKVYGAPSVKAAWYGVWRTAGTVSRQI 192

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGE---- 247
           F+P P V S ++ F  H    P   E  K+   +   AF +RRKTLRQSL  + G+    
Sbjct: 193 FWPVPNVDSILVGFERHATE-PGDDELRKRTFALVDAAFQQRRKTLRQSLAPVYGDPAAA 251

Query: 248 -NLLHQAGIETNLRAENLSIEDFCRIT 273
              L  AG+    R E L++ DF R+ 
Sbjct: 252 GAALEAAGVAPRRRGEQLTLADFVRLA 278


>gi|72389977|ref|XP_845283.1| ribosomal RNA adenine dimethylase family protein, conserved
           [Trypanosoma brucei TREU927]
 gi|62359277|gb|AAX79719.1| ribosomal RNA adenine dimethylase family protein, conserved
           [Trypanosoma brucei]
 gi|70801818|gb|AAZ11724.1| ribosomal RNA adenine dimethylase family protein, conserved
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
          Length = 344

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 14/217 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T  +    LKT  S   ++  K  GQ+ L +  ++  I E +       V+EIG G GNL
Sbjct: 43  TKKSAPTGLKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAVKPTDIVLEIGPGTGNL 102

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPI 119
           T+ LL   A+KVI  E D +    L       P   +L++I+ + L  +F  F       
Sbjct: 103 TEKLLQ-AAKKVIAFEVDPRMVAELNKRFQNSPLAPKLQVIRGNCLDHEFPYF------D 155

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           + +AN+PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV + 
Sbjct: 156 KCVANVPYAISSALVFKLLKR----PNFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQ 211

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
              + + +  IS + F P PKV S+VI   P  +P P
Sbjct: 212 LLARCSHLMKISKNSFNPPPKVESSVIRLDPK-HPAP 247


>gi|261328672|emb|CBH11650.1| ribosomal RNA adenine dimethylase family protein,conserved,
           putative [Trypanosoma brucei gambiense DAL972]
          Length = 383

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 14/217 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T  +    LKT  S   ++  K  GQ+ L +  ++  I E +       V+EIG G GNL
Sbjct: 82  TKKSAPTGLKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAVKPTDIVLEIGPGTGNL 141

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPI 119
           T+ LL   A+KVI  E D +    L       P   +L++I+ + L  +F  F       
Sbjct: 142 TEKLLQ-AAKKVIAFEVDPRMVAELNKRFQNSPLAPKLQVIRGNCLDHEFPYF------D 194

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           + +AN+PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV + 
Sbjct: 195 KCVANVPYAISSALVFKLLKR----PNFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQ 250

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
              + + +  IS + F P PKV S+VI   P  +P P
Sbjct: 251 LLARCSHLMKISKNSFNPPPKVESSVIRLDPK-HPAP 286


>gi|229074103|ref|ZP_04207150.1| Dimethyladenosine transferase [Bacillus cereus Rock4-18]
 gi|229094763|ref|ZP_04225769.1| Dimethyladenosine transferase [Bacillus cereus Rock3-29]
 gi|229100830|ref|ZP_04231645.1| Dimethyladenosine transferase [Bacillus cereus Rock3-28]
 gi|228682597|gb|EEL36659.1| Dimethyladenosine transferase [Bacillus cereus Rock3-28]
 gi|228688631|gb|EEL42503.1| Dimethyladenosine transferase [Bacillus cereus Rock3-29]
 gi|228708997|gb|EEL61123.1| Dimethyladenosine transferase [Bacillus cereus Rock4-18]
          Length = 220

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 19/218 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D    F + F     + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+          ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTNETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   + +L + GI+   R E LSIE+F  ++N L
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 214


>gi|21313560|ref|NP_079723.1| probable dimethyladenosine transferase [Mus musculus]
 gi|27151491|sp|Q9D0D4|DIMT1_MOUSE RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=DIM1 dimethyladenosine transferase 1-like;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|12847736|dbj|BAB27687.1| unnamed protein product [Mus musculus]
 gi|18043925|gb|AAH19799.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Mus
           musculus]
 gi|74148362|dbj|BAE36330.1| unnamed protein product [Mus musculus]
 gi|148686528|gb|EDL18475.1| RIKEN cDNA 1500031M22, isoform CRA_b [Mus musculus]
          Length = 313

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPLASKLQVLVGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       ++ 
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 264 TVIPEDFSIAD--KIQQILT 281


>gi|319955820|ref|YP_004167083.1| dimethyladenosine transferase [Nitratifractor salsuginis DSM 16511]
 gi|319418224|gb|ADV45334.1| dimethyladenosine transferase [Nitratifractor salsuginis DSM 16511]
          Length = 286

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 23/271 (8%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           I  K  GQNFL D +++++I +S    D + V+EIG G G+LT+ L+ +  R V   E D
Sbjct: 11  IADKRFGQNFLEDRSVVEQIIQSMPD-DDLPVVEIGPGLGDLTKELVRV--RPVTAFEVD 67

Query: 80  QQFFPIL-KDISSQ-HPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTRLL 134
           ++    L K+ S +    RL +   D L    E++ N   I  P R++ANLPY I T ++
Sbjct: 68  KRLCDYLGKNFSREIADGRLRLECGDVL----ERWKNGSLIDRPYRLVANLPYYIATNII 123

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
              +      P   S   + QKEV E+  A++   ++  LSVL G   +A +   + P  
Sbjct: 124 LKALRD----PHCRSTLTMVQKEVAEKFAAREGDRNFSALSVLAGSVGEARIRLLVPPSA 179

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL---- 250
           F P PKV S V+      N      E+  K    AF + RKTL ++L     ++LL    
Sbjct: 180 FNPPPKVESAVLEIRKEHNLTDGGFEAFLKA---AFRQPRKTLMKNLSAAYPKSLLEPLF 236

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQD 281
               +   LR   +    + R+   LT   D
Sbjct: 237 EALKLGKTLRPHQVGTTLYHRLYQALTKEPD 267


>gi|229159215|ref|ZP_04287240.1| Dimethyladenosine transferase [Bacillus cereus R309803]
 gi|228624230|gb|EEK81031.1| Dimethyladenosine transferase [Bacillus cereus R309803]
          Length = 220

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 21/220 (9%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D    F + F     + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL------ 241
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVADETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
               K L  + +L + GI+   R E LSIE+F  ++N L 
Sbjct: 177 FPKDKELLNQ-ILTEVGIDPKRRGETLSIEEFATLSNALV 215


>gi|149059278|gb|EDM10285.1| similar to RIKEN cDNA 1500031M22 (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 313

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 19/261 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPLASKLQVLVGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       ++ 
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQN 263

Query: 258 NLRAENLSIEDFCRITNILTD 278
            +  E+ SI D  +I  ILT+
Sbjct: 264 TVIPEDFSIAD--KIQQILTN 282


>gi|269114782|ref|YP_003302545.1| Dimethyladenosine transferase [Mycoplasma hominis]
 gi|268322407|emb|CAX37142.1| Dimethyladenosine transferase [Mycoplasma hominis ATCC 23114]
          Length = 257

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 16/250 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL + NI K+I +++  + G  +IEIG G G +T  +  +  R ++ IE D++ 
Sbjct: 6   KSLGQNFLSNKNIQKEIVKAANVV-GKNIIEIGPGMGAITDQMADVVNR-LVCIEFDKRL 63

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
           +  L  +   + + +EI+  D L+ D  K+    +   +I N+PYNI + ++F  +    
Sbjct: 64  YEFL--LQKNYSSNVEILNQDFLQTDLLKY----TDFEVIGNIPYNITSDIIFKLLDN-- 115

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                  +TL+ QKEV +RI     +  Y +L+       +   +F +    F P+PKV 
Sbjct: 116 -AKNINKITLMVQKEVADRICCGAGNSQYSKLAASIQLLYEPKYLFTVKAKEFNPAPKVD 174

Query: 203 STVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENLLHQAGIET 257
           S VI  + I + + I      + K  ++ F  +RKTL  +     +    + L    ++ 
Sbjct: 175 SAVIQLNLIKNNDFIWNNQVEILKFIKQMFQYKRKTLLNNFPSNLKQKISDFLKSNELDL 234

Query: 258 NLRAENLSIE 267
           N+RAE ++ E
Sbjct: 235 NIRAEKITKE 244


>gi|28572717|ref|NP_789497.1| dimethyladenosine transferase [Tropheryma whipplei TW08/27]
 gi|28410849|emb|CAD67235.1| dimethyladenosine transferase [Tropheryma whipplei TW08/27]
          Length = 418

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 9/172 (5%)

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I DDALK+   +   I+ P  ++ANLPYNI   L+ + +      P   S T++ Q EV
Sbjct: 236 LINDDALKL---RALPIT-PKMLVANLPYNIAVPLIMHVLQQF---PSIVSATIMLQSEV 288

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPC 217
            +RI A+  S   G ++    W      +  ++ HVF+P P V S ++ FI    +    
Sbjct: 289 ADRICAKPPSRSAGAVTAKAAWFGHWKKVMKVARHVFYPIPGVDSVIVQFIRDEKSDCEV 348

Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269
             E+   + ++AF KRRK LRQSL+ +   + +  AGI+  LRAENLS+++F
Sbjct: 349 LREATFSLIEDAFSKRRKMLRQSLRYIPQADFV-AAGIDPMLRAENLSVDNF 399



 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
          + +P K  GQ+F+ D NI  KI   +G   G  V+EIG G G LT  L    A  V  +E
Sbjct: 13 RFVPYKRFGQHFVTDPNICNKIVTLAGVAPGDCVLEIGPGFGALTVALAKAKA-TVCGVE 71

Query: 78 KDQQFFPIL 86
           D + F  L
Sbjct: 72 IDTRLFNAL 80


>gi|303275612|ref|XP_003057100.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461452|gb|EEH58745.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 274

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 132/280 (47%), Gaps = 31/280 (11%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++++GQ+FL+D +++    +++    G +++EIG G GNLT  LL+ GA  V  +EKD+ 
Sbjct: 1   RRWLGQHFLVDRSVILDALDAADVRAGDSILEIGPGTGNLTAELLSAGA-VVTAVEKDRN 59

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------NISSPIR--IIANLP 126
               L +    + N L + + D LK +  K F                +P R  ++AN+P
Sbjct: 60  LADKLAETFRGNEN-LTVHEADFLKWNVAKAFPEPTDAAAADAALGDGAPRRAKVVANIP 118

Query: 127 YNIGTRLLFNWIS-ADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKA 184
           YNI T +L   +   DT    +E++  +FQ+EV  R I        Y  +SV   + ++ 
Sbjct: 119 YNITTDILKVLLPMGDT----FENMVFMFQEEVARRLIRDDAGGSDYRPMSVRVRYYSEP 174

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN----PIPCCLESLKKITQEAFGKRRKTLRQS 240
             +  +S   F P P V S +I F P       P+           Q  F ++RK L+ +
Sbjct: 175 YYVRPVSAACFDPPPNVESCLIGFRPRRREEYLPLAGTERQFFAFVQTCFAQKRKMLKNN 234

Query: 241 LKRLGGENLLHQAGIETN----LRAENLSIEDFCRITNIL 276
           ++    ++ +  A    N     RA+ LS+E++  + N +
Sbjct: 235 MRAACDDDTIRDALATLNRPEKTRAQELSMEEYVELFNFV 274


>gi|28493170|ref|NP_787331.1| dimethyladenosine transferase [Tropheryma whipplei str. Twist]
 gi|28476210|gb|AAO44300.1| dimethyladenosine transferase [Tropheryma whipplei str. Twist]
          Length = 448

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 9/172 (5%)

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I DDALK+   +   I+ P  ++ANLPYNI   L+ + +      P   S T++ Q EV
Sbjct: 266 LINDDALKL---RALPIT-PKMLVANLPYNIAVPLIMHVLQ---QFPSIVSATIMLQSEV 318

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPC 217
            +RI A+  S   G ++    W      +  ++ HVF+P P V S ++ FI    +    
Sbjct: 319 ADRICAKPPSRSAGAVTAKAAWFGHWKKVMKVARHVFYPIPGVDSVIVQFIRDEKSDCEV 378

Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269
             E+   + ++AF KRRK LRQSL+ +   + +  AGI+  LRAENLS+++F
Sbjct: 379 LREATFSLIEDAFSKRRKMLRQSLRYIPQADFV-AAGIDPMLRAENLSVDNF 429



 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
          + +P K  GQ+F+ D NI  KI   +G   G  V+EIG G G LT  L    A  V  +E
Sbjct: 13 RFVPYKRFGQHFVTDPNICNKIVTLAGVAPGDCVLEIGPGFGALTVALAKAKA-TVCGVE 71

Query: 78 KDQQFFPIL 86
           D + F  L
Sbjct: 72 IDTRLFNAL 80


>gi|213580131|ref|ZP_03361957.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 120

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 2/114 (1%)

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKI 225
           S  YGRLSV+  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +I
Sbjct: 1   SKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRI 60

Query: 226 TQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           T EAF +RRKT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N
Sbjct: 61  TTEAFNQRRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 114


>gi|71656161|ref|XP_816632.1| ribosomal RNA adenine dimethylase family protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70881773|gb|EAN94781.1| ribosomal RNA adenine dimethylase family protein, putative
           [Trypanosoma cruzi]
          Length = 344

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 14/209 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           LKT  S   ++  K  GQ+ L +  ++  I E +       V+EIG G GNLT+ LL + 
Sbjct: 51  LKTGGSQCGMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQV- 109

Query: 70  ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++KVI  E D +    L       P  ++L++I+ + L  +F  F       + +AN+PY
Sbjct: 110 SKKVIAFEVDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPY 163

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + L+F  +      P ++   L+FQ+E   R+ AQ  +  Y RLSV +    + + +
Sbjct: 164 AISSALVFKLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHL 219

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
             IS + F P PKV S+VI   P  +P P
Sbjct: 220 MKISKNSFNPPPKVESSVIRLDPK-HPAP 247


>gi|255088241|ref|XP_002506043.1| predicted protein [Micromonas sp. RCC299]
 gi|226521314|gb|ACO67301.1| predicted protein [Micromonas sp. RCC299]
          Length = 266

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 136/272 (50%), Gaps = 23/272 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++++GQ+FL+D +++    +++   DG  ++EIG G GNLT  L+  GA  +  +EKD+ 
Sbjct: 1   RRWLGQHFLIDHSVILDALDAAAVTDGDRILEIGPGTGNLTVELVKAGA-VITAVEKDRN 59

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------NISSPIRIIANLPYNIGTRLL 134
               L+       + + + + D LK +  + F         +   +++AN+PYNI T +L
Sbjct: 60  LADKLR-TQYDGDDAVTVHEADFLKWNVAREFEHRGVYPGDAHRAKVVANIPYNITTDIL 118

Query: 135 FNWIS-ADTWPPFWESLTLLFQKEVGERITAQKN-SPHYGRLSVLTGWRTKATMMFDISP 192
              +   DT+      +  +FQ+EV  R+  Q + +  Y  +SV   + ++   +  ++ 
Sbjct: 119 KTLLPMGDTFG----DMVFMFQEEVARRLIRQDSGASDYRPMSVRVHYYSEPYYIRPVTA 174

Query: 193 HVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGEN 248
             F P P V S ++ F P     +P    + K+     Q  F ++RK L+ +L+ +  + 
Sbjct: 175 SCFDPPPNVESCLVGFRPKPRRELPALRGTEKQFFSFVQACFAQKRKMLKNNLRAVCDDE 234

Query: 249 LLHQA----GIETNLRAENLSIEDFCRITNIL 276
           ++  A    G +   RA+ L+++++ R+ N +
Sbjct: 235 VIAAALEDLGRDEKTRAQQLTMDEYVRLFNFV 266


>gi|75753575|gb|ABA26919.1| KsgA [Vibrio harveyi]
          Length = 143

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 2/134 (1%)

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207
           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P PKV S V+ 
Sbjct: 7   QDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPPPKVDSAVVR 66

Query: 208 FIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
            +P+   P P   L  L+++ +E F +RRKT+R   K L    +L + G+  ++R ENL+
Sbjct: 67  LVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKALISAEVLEELGVNPSMRPENLT 126

Query: 266 IEDFCRITNILTDN 279
           ++ F  + N L DN
Sbjct: 127 LQQFVAMANWLADN 140


>gi|288818058|ref|YP_003432406.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6]
 gi|288787458|dbj|BAI69205.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6]
 gi|308751659|gb|ADO45142.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6]
          Length = 249

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 23/257 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+ LL   ++K I E     +G  ++EIG G GNLT+ LL    +K+ +IE D Q
Sbjct: 4   KKRYGQHILLSKGVIKAIVERLSIQEGDILLEIGPGTGNLTRELLNTPLKKLYLIEIDSQ 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LK I     +R+EI   DA + D     ++   ++++ NLPYN+ + ++ N +   
Sbjct: 64  MVHELKKIED---DRVEIFLADATQFD---ICSLGGELKLVGNLPYNVASLIVENTVIHR 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              PF      + QKEV +++      P +    V T +     M   +    FFP PKV
Sbjct: 118 KCIPFA---LFMLQKEVAQKLL---KGPSWLSTFVRTFYDLNYVM--SVPARFFFPKPKV 169

Query: 202 TSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            S ++ F+    P    +E     K+   + +  RRK ++  ++    E++L  A I+  
Sbjct: 170 QSALLEFVR--KPDGEMIEDEKDYKRFLTKLYSMRRKAIKSKIE----EDILKMANIDPL 223

Query: 259 LRAENLSIEDFCRITNI 275
            R E LS+     + N+
Sbjct: 224 KRVEELSVAHVLLLYNL 240


>gi|156095981|ref|XP_001614025.1| dimethyladenosine transferase [Plasmodium vivax SaI-1]
 gi|148802899|gb|EDL44298.1| dimethyladenosine transferase, putative [Plasmodium vivax]
          Length = 522

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 13/234 (5%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  +IE+G G G +++ L     +K+  +E D +   +L   S   P   + I DD L++
Sbjct: 273 GKGIIELGCGLGQISKFLFA-KYKKMTAVEIDSRALSVL---SRTMPG-FDFIHDDVLQI 327

Query: 108 DFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
           +++    + ++ + +I NLP+ I +++LF  +    +  + E   +  Q EVG+RI ++ 
Sbjct: 328 NYKDLSESKATKLTVIGNLPFYITSQILFCLLD---YHHYIEQAIVTIQYEVGQRIVSKV 384

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
           N   Y  LS+L    T   ++F I    F+P PKV + V+  I   + + C L  LK+I 
Sbjct: 385 NEKSYSILSILFNLYTSPYLLFKIPSSAFYPVPKVEAAVMKIIFKQSSLNCNLLFLKEIL 444

Query: 227 QEAFGKRRKTLRQSLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           + +F +RRK L+ SLK L  +      L       +LR + L+   F  +TN L
Sbjct: 445 RHSFQQRRKKLKSSLKPLLAKYSTTKELQLPPSVCHLRPQQLTPPQFVELTNFL 498


>gi|123968460|ref|YP_001009318.1| dimethyladenosine transferase [Prochlorococcus marinus str. AS9601]
 gi|166221691|sp|A2BR00|RSMA_PROMS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|123198570|gb|ABM70211.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. AS9601]
          Length = 274

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 144/281 (51%), Gaps = 25/281 (8%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K+H             KK  GQ++L++  IL+KI E +       ++EIG G G LT
Sbjct: 1   MNSKNHH-----------QKKRFGQHWLVNKKILEKIKEIAVLNQNDFILEIGPGKGALT 49

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RI 121
             LL    +K+  IE D+    +L D    + ++  + Q D L V+ +   +I+  I ++
Sbjct: 50  SKLLDSEIKKLHAIELDKDLINLLND-KFNNNDKFSLQQGDILTVNLD---SINKKITKV 105

Query: 122 IANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           IAN+PYNI   +L  +I     T    +E +  L QK+V +RI +++ SP+ G LSV   
Sbjct: 106 IANIPYNITGPILDIFIGRLGITRNYNYEKIIFLMQKDVVDRILSKEGSPNAGALSVRMQ 165

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKT 236
             +K   + D+ P  F P PKV S+++ F P   HL       +++ K+ + +F  RRK 
Sbjct: 166 LLSKIKKICDVPPSSFSPPPKVFSSLVVFEPIKNHLRLDISIEKNIDKLLRISFNSRRKM 225

Query: 237 LRQSLKR-LGGE---NLLHQAGIETNLRAENLSIEDFCRIT 273
           LR +L   L  E    L   + +  NLR +++SIE + ++ 
Sbjct: 226 LRNTLNSILSNEEINELSESSKVCFNLRPQDISIEQWIKLA 266


>gi|325968329|ref|YP_004244521.1| dimethyladenosine transferase [Vulcanisaeta moutnovskia 768-28]
 gi|323707532|gb|ADY01019.1| dimethyladenosine transferase [Vulcanisaeta moutnovskia 768-28]
          Length = 276

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 139/274 (50%), Gaps = 23/274 (8%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L  ++  Y++  +K + Q+F++D  +++ I  S   L+   V+EIG G G LT  L  
Sbjct: 11  EDLMNLIMKYRLRLRKRLSQHFVVDPMVIRDII-SHVPLNS-NVLEIGTGIGILTYYLAK 68

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + + +VI +E D +   I + + +Q  N + IIQ +AL++ + +  +I     I++N+PY
Sbjct: 69  VTS-QVITVEIDGRLVRIAERVLNQL-NNISIIQGNALEIPWPQV-DI-----IVSNVPY 120

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I + L+   I             L  Q+EV  R+ ++     YGRLS++T      +++
Sbjct: 121 SITSPLIIRIIREGI-----PRALLTIQREVANRLISKPGGDDYGRLSIITQCNYFVSIL 175

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSL-KRL 244
               P  F+PSP++ S+++         PC   +++L+ +T   F  R + LR  L K L
Sbjct: 176 NTYPPDSFYPSPEIYSSLVMMTKKE---PCYGDMKALESVTNVLFRHRNRVLRWVLNKYL 232

Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           G +  N L +A I  N R   L I++  +IT  L
Sbjct: 233 GSDAVNALMKANINVNARVRQLGIDELVKITEYL 266


>gi|167533147|ref|XP_001748254.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773374|gb|EDQ87015.1| predicted protein [Monosiga brevicollis MX1]
          Length = 345

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 117/255 (45%), Gaps = 18/255 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  +++ I + +      TV+EIG G GNLT  LL  G +KV+  E 
Sbjct: 35  IVFNKDFGQHILKNPLVVQGIIDKAAIKSTDTVLEIGPGTGNLTVKLLEKG-KKVVACEV 93

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P   +L ++  D LK D   FF++      +AN+PY I +  +F 
Sbjct: 94  DPRLAAELQKRVMGTPLHRKLHLVMGDVLKADLP-FFDVC-----VANMPYQISSPFVFK 147

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  +R+ A+     Y RLSV T    +   +  +  + F 
Sbjct: 148 IL---LHRPLFRCAVLMFQREFAQRLVAKPGDALYCRLSVNTQLLARVDHVMKVGRNNFR 204

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL------RQSLKRLGGENLL 250
           P PKV S+V+   P   P P   E    + + AF ++ KTL      +  LK L     +
Sbjct: 205 PPPKVESSVVRIEPRNPPPPVDFEEWDGLLRIAFIRKNKTLAACFHSKSVLKLLESNYRI 264

Query: 251 HQAGIETNLRAENLS 265
             A  +   RA+  S
Sbjct: 265 FCAAAQPPRRAQGCS 279


>gi|195108513|ref|XP_001998837.1| GI24187 [Drosophila mojavensis]
 gi|193915431|gb|EDW14298.1| GI24187 [Drosophila mojavensis]
          Length = 306

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +L   A+KVI  E 
Sbjct: 21  IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P   +L+++  D LK D   FF++      IAN+PY I + L+F 
Sbjct: 80  DTRLAAELQKRVQGTPMQPKLQVLIGDFLKADLP-FFDLC-----IANVPYQISSPLIFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  +R+ A+     Y RLS+ T    +  M+  +  + F 
Sbjct: 134 LL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFK 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           P PKV S+V+   P   P P        +T+ AF ++ KTL  + K
Sbjct: 191 PPPKVESSVVRLEPKNPPPPINFTEWDGLTRIAFLRKNKTLAATFK 236


>gi|114051271|ref|NP_001039501.1| probable dimethyladenosine transferase [Bos taurus]
 gi|114149276|sp|Q2KHT8|DIMT1_BOVIN RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=DIM1 dimethyladenosine transferase 1-like;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|86438246|gb|AAI12887.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Bos
           taurus]
 gi|296475843|gb|DAA17958.1| probable dimethyladenosine transferase [Bos taurus]
          Length = 313

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KVI  E D +   
Sbjct: 34  IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPLASKLQVMVGDVLKADLP-FFDAC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 264 IIIPEDFSIAD--KIQQILT 281


>gi|225704090|gb|ACO07891.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss]
          Length = 306

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 12/230 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  ++  I E +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 27  LGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDGRLVA 85

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P   +L+I+  D LK +   FF++      + NLPY I +  +F  +    
Sbjct: 86  ELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VTNLPYQISSPFVFKLL---L 136

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           S+V+   P   P P   +    + + AF ++ KTL    K    E LL +
Sbjct: 197 SSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLEK 246


>gi|33240213|ref|NP_875155.1| dimethyladenosine transferase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|62900571|sp|Q7VCH7|RSMA_PROMA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33237740|gb|AAP99807.1| Dimethyladenosine transferase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 279

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 124/255 (48%), Gaps = 11/255 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +P+K  GQ++L D +IL+KI  ++   +   ++EIG G G LT+ LL    + V  +E D
Sbjct: 7   VPRKRFGQHWLRDDSILEKILLAADLQEEDRILEIGPGRGALTEKLLESNVKLVHGVELD 66

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +    LK   +   +R  + + DAL V       I++  +++AN+PYNI   LL   I 
Sbjct: 67  AELIVGLKQRFAGQ-SRFTLQEGDALSVSLLPHDGIAAN-KVVANIPYNITGPLLERLIG 124

Query: 140 --ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
               +    ++ L LL QKEV +RI A      +  +SV      K   + ++ P  F P
Sbjct: 125 RLGRSSEVKYQRLVLLVQKEVAKRILALPGQSSFSAMSVRLQLLAKCQSVCEVHPSSFSP 184

Query: 198 SPKVTSTVIHFIP--HLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250
            PKV S VI   P      +   +E  +  I Q AF  RRK LR +L ++      E L 
Sbjct: 185 QPKVYSEVIILDPLEKDERLDFLVERRVASIVQIAFLSRRKKLRNTLTKICPLDELEPLA 244

Query: 251 HQAGIETNLRAENLS 265
           ++ GI  N R + L+
Sbjct: 245 YRQGINLNQRPQELA 259


>gi|255576485|ref|XP_002529134.1| dimethyladenosine transferase, putative [Ricinus communis]
 gi|223531413|gb|EEF33247.1| dimethyladenosine transferase, putative [Ricinus communis]
          Length = 350

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 14/201 (6%)

Query: 15  SHYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +HY+  I   K  GQ+ L +  ++  I E SG      ++EIG G GNLT+ LL  G + 
Sbjct: 19  NHYQGGISFHKSKGQHILKNPLLVDTIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KM 77

Query: 73  VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           VI +E D +    L+      P  NRL++IQ D LK D   +F+I      +AN+PY I 
Sbjct: 78  VIAVELDPRMVLELQRRFQGTPMSNRLKVIQGDVLKTDLP-YFDI-----CVANIPYQIS 131

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + L F  ++     P +    ++FQ+E   R+ AQ     Y RLSV T    + + +  +
Sbjct: 132 SPLTFKLLNHQ---PSFRCAIIMFQREFAMRLVAQPGDTLYCRLSVNTQLYARVSHLLKV 188

Query: 191 SPHVFFPSPKVTSTVIHFIPH 211
             + F P PKV S+V+   P 
Sbjct: 189 GKNNFRPPPKVDSSVVRIEPR 209


>gi|158312623|ref|YP_001505131.1| dimethyladenosine transferase [Frankia sp. EAN1pec]
 gi|158108028|gb|ABW10225.1| dimethyladenosine transferase [Frankia sp. EAN1pec]
          Length = 291

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 129/290 (44%), Gaps = 33/290 (11%)

Query: 14  LSHY-KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           L+H   + P K  GQNFL+D N ++++   +        +E+G G G+LT  L+T  A  
Sbjct: 10  LAHALDLRPTKRRGQNFLVDPNTVRRLVRLAAVGPDDVALEVGPGLGSLTLGLVTEAAAV 69

Query: 73  VIVIEKDQQFFPIL---------KDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRII 122
             V        P+L           + +    RL +++ D L+V+       +++P  + 
Sbjct: 70  AAVEVD-----PVLAAALPVTAAARLPAAVAARLHVVEADGLRVEPSDLPPAVAAPTVLA 124

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   LL   +  + +P     L ++ Q EV +R+T+      YG  SV   W  
Sbjct: 125 ANLPYNVAVPLLLGLL--ERFPSIRRGL-VMVQAEVADRLTSPPGGRIYGVPSVKLAWYA 181

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238
           +A     +   VF+P P V S ++ F       P     L++        AF +RRKTLR
Sbjct: 182 QARPAGAVPRPVFWPQPNVDSGLVAFT--RRAAPPADAGLRREVFAAVDAAFAQRRKTLR 239

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN---ILTDNQ 280
            +L    G     E L   AG++   R E L +E F R+     IL  +Q
Sbjct: 240 TALAPWAGSPARAEQLARAAGVDPGARGETLDVEAFARLAQQARILPADQ 289


>gi|194745790|ref|XP_001955370.1| GF16271 [Drosophila ananassae]
 gi|190628407|gb|EDV43931.1| GF16271 [Drosophila ananassae]
          Length = 306

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 12/239 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   + T +    I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +
Sbjct: 8   KKTRIHTEVQKQGIVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVRM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KVI  E D +    L+      P   +L+++  D LK +   FF++      IA
Sbjct: 68  LE-KAKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  +R+ A+     Y RLS+ T    +
Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K
Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236


>gi|195341093|ref|XP_002037146.1| GM12757 [Drosophila sechellia]
 gi|194131262|gb|EDW53305.1| GM12757 [Drosophila sechellia]
          Length = 306

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 12/226 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +L   A+KVI  E 
Sbjct: 21  IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P   +L ++  D LK +   FF++      IAN+PY I + L+F 
Sbjct: 80  DTRLAAELQKRVQATPLQPKLHVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  ER+ A+     Y RLS+ T    +  M+  +  + F 
Sbjct: 134 LL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFR 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           P PKV S+V+   P   P P        +T+ AF ++ KTL  + K
Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236


>gi|322823660|gb|EFZ29364.1| ribosomal RNA adenine dimethylase family protein, putative
           [Trypanosoma cruzi]
          Length = 344

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 14/209 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           LKT  S   ++  K  GQ+ L +  ++  I E +       V+EIG G GNLT+ LL + 
Sbjct: 51  LKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQV- 109

Query: 70  ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++KVI  E D +    L       P  ++L++I+ + L  +F  F       + +AN+PY
Sbjct: 110 SKKVIAFEVDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPY 163

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + L+F  +      P ++   L+FQ+E   R+ AQ  +  Y RLSV +    + + +
Sbjct: 164 AISSALVFKLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHL 219

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
             IS + F P PKV S+VI   P  +P P
Sbjct: 220 MKISKNSFNPPPKVESSVIRLDPK-HPAP 247


>gi|317011563|gb|ADU85310.1| dimethyladenosine transferase [Helicobacter pylori SouthAfrica7]
          Length = 271

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 113/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVSALPPLNSLRLIEIGVGLGDLTLRLLERYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK    + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRERLK--KQKKPFELELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL       +++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVAFKFGAKDSQ---NALSVLAHAIGNVSLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQS 240
           P PKV S+V   I           L P     E+L+K         +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLTPTLSFEEALQKGFEALEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|195036390|ref|XP_001989653.1| GH18676 [Drosophila grimshawi]
 gi|193893849|gb|EDV92715.1| GH18676 [Drosophila grimshawi]
          Length = 306

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +L   A+KVI  E 
Sbjct: 21  IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLE-RAKKVIACEI 79

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P   +L+++  D LK +   FF++      IAN+PY I + L+F 
Sbjct: 80  DTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  +R+ A+     Y RLSV T    +  M+  +  + F 
Sbjct: 134 LL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSVNTQLLARVDMLMKVGKNNFK 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           P PKV S+V+   P   P P        +T+ AF ++ KTL  + K
Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236


>gi|71425341|ref|XP_813086.1| ribosomal RNA adenine dimethylase family protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70877938|gb|EAN91235.1| ribosomal RNA adenine dimethylase family protein, putative
           [Trypanosoma cruzi]
          Length = 344

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 14/209 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           LKT  S   ++  K  GQ+ L +  ++  I E +       V+EIG G GNLT+ LL   
Sbjct: 51  LKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQ-A 109

Query: 70  ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++KVI  E D +    L       P  ++L++I+ + L  +F  F       + +AN+PY
Sbjct: 110 SKKVIAFEVDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPY 163

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + L+F  +      P ++   L+FQ+E   R+ AQ  +  Y RLSV +    + + +
Sbjct: 164 AISSALVFKLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHL 219

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
             IS + F P PKV S+VI   P  +P P
Sbjct: 220 MKISKNSFNPPPKVESSVIRLDPK-HPAP 247


>gi|301761816|ref|XP_002916330.1| PREDICTED: probable dimethyladenosine transferase-like [Ailuropoda
           melanoleuca]
          Length = 313

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KVI  E D +   
Sbjct: 34  IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPLASKLQVLVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 264 IIIPEDFSIAD--KIQQILT 281


>gi|281348842|gb|EFB24426.1| hypothetical protein PANDA_004390 [Ailuropoda melanoleuca]
          Length = 298

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KVI  E D +   
Sbjct: 32  IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACELDPRLVA 90

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 91  ELHKRVQGTPLASKLQVLVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 141

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 142 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 201

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 202 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 261

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 262 IIIPEDFSIAD--KIQQILT 279


>gi|67464821|ref|XP_648602.1| dimethyladenosine transferase [Entamoeba histolytica HM-1:IMSS]
 gi|56464806|gb|EAL43214.1| dimethyladenosine transferase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 295

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 13/248 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I ++I +++       V+EIG G GNLT  +L    +K+I IE D + 
Sbjct: 14  KSEGQHILKNPMIAQQIVDAAELRRTDVVLEIGPGTGNLTMKMLPF-CKKLIAIEIDPRM 72

Query: 83  FPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              LK   S   +  +LEIIQ D LKV+   +F++      ++N PY+I + L+F  ++ 
Sbjct: 73  AAELKKRVSVTDYVKKLEIIQGDFLKVELP-YFDVC-----VSNTPYSISSPLVFKLLNH 126

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P + S  L+FQ+E   R+ A+   P Y RLSV T        +  +  + F P PK
Sbjct: 127 R---PQFRSAVLMFQREFAMRLVAKPGDPLYCRLSVNTQLLADVFHVMKVGRNNFKPPPK 183

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           V S+V+  IP     P  L       +  F ++ KTL  SL R+     + +  +    +
Sbjct: 184 VESSVVRMIPVKPAPPLNLVEFDGFLRICFLRKHKTL-SSLFRISSVLEVMEKNLRIIAK 242

Query: 261 AENLSIED 268
             N+ I++
Sbjct: 243 IRNIPIDE 250


>gi|315274531|ref|ZP_07869435.1| dimethyladenosine transferase [Listeria marthii FSL S4-120]
 gi|313615841|gb|EFR89065.1| dimethyladenosine transferase [Listeria marthii FSL S4-120]
          Length = 167

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 10/157 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +   FL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLXXXFLIDTNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N + ++  D LK D E     +F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNVRVVHGDVLKADVEEVIAQQFAKPELPLKIVANLPY 131

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
            + T ++   +  D  P   +S+T + QKEV +RI+A
Sbjct: 132 YVTTPIILKLLH-DNIP--ADSMTFMLQKEVADRISA 165


>gi|114600099|ref|XP_001136488.1| PREDICTED: dimethyladenosine transferase isoform 2 [Pan
           troglodytes]
          Length = 300

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 264 IIIPEDFSIAD--KIQQILT 281


>gi|126315217|ref|XP_001366147.1| PREDICTED: similar to Dimethyladenosine transferase [Monodelphis
           domestica]
          Length = 309

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 17/260 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 30  LGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 88

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 89  ELHKRVQGTPQASKLQVMVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 139

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 140 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 199

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +     +    
Sbjct: 200 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEK-NYRIHCSVH 258

Query: 263 NLSI-EDFC---RITNILTD 278
           N++I EDF    +I  IL D
Sbjct: 259 NIAIPEDFSIADKIQKILMD 278


>gi|317490258|ref|ZP_07948746.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA]
 gi|325833365|ref|ZP_08165814.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1]
 gi|316910752|gb|EFV32373.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA]
 gi|325485289|gb|EGC87758.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1]
          Length = 347

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 134/334 (40%), Gaps = 80/334 (23%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L  + +  K  +GQNFL++  IL+KI   +       V+E+G G G LT  LL   A
Sbjct: 14  RAVLEAHGLSTKYSLGQNFLINDAILQKIVALADLAPDDYVLEVGPGIGTLTIALLK-SA 72

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL---KVDF------------------ 109
            +V+ +E+D     +L +  +   +R  ++  DAL     DF                  
Sbjct: 73  GRVLSVERDPDLPAVLVETLAPWSDRFALLNKDALDLCSADFQSAEPLDAAASRGARSRG 132

Query: 110 ----------------------EKFFNISSPIRI-----IANLPYNIGTRLLFNWISADT 142
                                 E   +++ P+R+     +ANLPY +   ++ ++     
Sbjct: 133 EAEGSRTEVRSAFALPTISGTTETLADVAGPMRLLPNKLVANLPYAVAATVVLDYFEQFA 192

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                ES T++ QKEV +R+ A   + +YG  +V      +    F + P  FFP P+V 
Sbjct: 193 S---LESATVMVQKEVADRMAASPGTKNYGAYTVKLRLYAEPAGRFAVGPGNFFPPPRVE 249

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEA-----------FGKRRKTLRQSLKR-LGGEN-- 248
           S V+     LN  P   +    +  +A           F  RRKTL  S K    G    
Sbjct: 250 SAVL----RLNRRPVFDDQGVPLDADAIAAACTMAEAAFATRRKTLSNSCKTYFAGRGPQ 305

Query: 249 ----------LLHQAGIETNLRAENLSIEDFCRI 272
                     L  +AGI+  LR E L + +F R+
Sbjct: 306 GAAVIARLPQLFERAGIDPRLRGETLDLPEFVRL 339


>gi|291395424|ref|XP_002714103.1| PREDICTED: dimethyladenosine transferase [Oryctolagus cuniculus]
          Length = 308

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 19/262 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ+ L +  ++  I E +       V+E+G G GN+T  LL   A+KVI  E D + 
Sbjct: 27  KGIGQHILKNPLVVNSIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACELDPRL 85

Query: 83  FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L       P  ++L+++  D LK +   FF+       +ANLPY I +  +F  +  
Sbjct: 86  VAELHKRVQGTPLASKLQVMVGDVLKTELP-FFDTC-----VANLPYQISSPFVFKLL-- 137

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PK
Sbjct: 138 -LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPK 196

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGI 255
           V S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +
Sbjct: 197 VESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSV 256

Query: 256 ETNLRAENLSIEDFCRITNILT 277
              +  E+ SI D  +I  ILT
Sbjct: 257 HNIIIPEDFSIAD--KIQQILT 276


>gi|297675337|ref|XP_002815639.1| PREDICTED: probable dimethyladenosine transferase-like isoform 1
           [Pongo abelii]
          Length = 313

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I +ILT
Sbjct: 264 IIIPEDFSIAD--KIQHILT 281


>gi|159462946|ref|XP_001689703.1| dimethyladenosine transferase [Chlamydomonas reinhardtii]
 gi|158283691|gb|EDP09441.1| dimethyladenosine transferase [Chlamydomonas reinhardtii]
          Length = 352

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 17/240 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +++ I + +G      V+EIG G GNLT  LL   A+KVI +E D + 
Sbjct: 43  KSKGQHILRNPLVVQAIVDKAGVKSTDVVLEIGPGTGNLTVKLLE-KAKKVIAVELDPRM 101

Query: 83  FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L+      P  N L+II  D ++V+   +F++      +AN+PYNI + L F  ++ 
Sbjct: 102 VLELQRRVQGTPYANNLQIIHGDFMRVELP-YFDLC-----VANIPYNISSPLTFKLLAH 155

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P + +  +++Q E   R+ A+     Y RL+V T    + + +  +  + F P PK
Sbjct: 156 R---PAFRAAVIMYQHEFAMRLVAKAGDNLYSRLAVNTQLLARVSHLLKVGKNNFRPPPK 212

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           V S+V+   P   P P        + +  F ++ KTL    K+    N L    +ETN R
Sbjct: 213 VDSSVVRIEPRHPPPPVNFLEWDGLVRLCFSRKNKTLGAIFKQ---TNTLQ--ALETNWR 267


>gi|220912054|ref|YP_002487363.1| dimethyladenosine transferase [Arthrobacter chlorophenolicus A6]
 gi|219858932|gb|ACL39274.1| dimethyladenosine transferase [Arthrobacter chlorophenolicus A6]
          Length = 290

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 126/283 (44%), Gaps = 28/283 (9%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     + P K +GQNF++D N +++I  ++G     TV+E+           L
Sbjct: 15  ASDIRRLAGEIGVRPTKTLGQNFVIDGNTIRRIVAAAGVGADETVLEV-----GPGLGSL 69

Query: 67  TLGARKVIVIEKDQQFFPIL-----KDISSQHP---NRLEIIQDDALKV-DFEKFFNISS 117
           TLG           +  P+L       ++   P       +++ DA+KV D         
Sbjct: 70  TLGLLDAAAAVVAVEIDPVLAAKLPATVAEWRPAAVGNFHLVEADAMKVTDLP-----VE 124

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P  ++ANLPYN+   ++ + +  + +P     L ++ Q EV +R+ A   S  YG  SV 
Sbjct: 125 PTALVANLPYNVAVPVVLHLL--EHFPSLQHGLVMV-QDEVADRLAAGPGSKTYGVPSVK 181

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKT 236
           + W  +      I  +VF+P+PK+ S ++ F     P      + +  +   AF +RRKT
Sbjct: 182 SAWYGQMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPATSATRQQVFAVIDAAFAQRRKT 241

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           LR +L    G     E  L  AG++   R E + I  F RI  
Sbjct: 242 LRAALSGWAGGGAEAERCLVAAGVDPTARGEVIDIAAFARIAE 284


>gi|326934876|ref|XP_003213509.1| PREDICTED: probable dimethyladenosine transferase-like [Meleagris
           gallopavo]
          Length = 385

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 119/260 (45%), Gaps = 19/260 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I E +       V+E+G G GNLT  +L    +KVI  E D +    
Sbjct: 107 GQHILKNPLVVNSIIEKAALRRTDIVLEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 165

Query: 86  LKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+     +   N+LEI   D LK D   FF+       +ANLPY I +  +F  +     
Sbjct: 166 LQKRVQGTCLANKLEIKVGDVLKTDLP-FFDA-----CVANLPYQISSPFVFKLL---LH 216

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            PF+    L+FQ+E   R+ A+  S  Y RLS+ T    +   +  +  + F P PKV S
Sbjct: 217 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVES 276

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL-HQAGIETNLR-- 260
           +V+   P   P P   +    + + AF ++ KTL  + K    E LL H   I  +L   
Sbjct: 277 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDHNYRIHCSLHNA 336

Query: 261 --AENLSIEDFCRITNILTD 278
              EN  I +  +I  +L D
Sbjct: 337 EIPENFKISE--KIQTVLKD 354


>gi|67463766|pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
 gi|67463767|pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
          Length = 285

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 6   IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 64

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 65  ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 115

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 116 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 175

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 176 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 235

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 236 IIIPEDFSIAD--KIQQILT 253


>gi|289596434|ref|YP_003483130.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
 gi|289534221|gb|ADD08568.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
          Length = 243

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 26/249 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNFL++  I   I + +       V+EIG G G LT  LL     +V  IE D+     L
Sbjct: 11  QNFLINPKIADYIVKEAEIKPNDIVLEIGPGKGILTGKLLE--KCEVYAIEIDKTLCEYL 68

Query: 87  KDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
             I        RL +I  DALKV+F KF       +I+AN+PY+I + LLF  +  +   
Sbjct: 69  NIIFQDDIKDGRLHLICGDALKVNFPKFN------KIVANIPYHISSPLLFKILEYE--- 119

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             +E   L+ Q E  ER+ A+  S  YGRLSV+  +  +A ++  +    F P P+V S 
Sbjct: 120 --FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFRPVPRVDSA 177

Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENL 264
           ++  I   +      + L +  ++ F +RRK +R         N+L +     + R E L
Sbjct: 178 IVK-ITKKDRFCYDKDKLNEFVRKLFEQRRKKIR---------NILGEVPY-GDRRVEEL 226

Query: 265 SIEDFCRIT 273
           S E+ C + 
Sbjct: 227 SPEEICEVV 235


>gi|254166890|ref|ZP_04873744.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
 gi|197624500|gb|EDY37061.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
          Length = 238

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 26/249 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNFL++  I   I + +       V+EIG G G LT  LL     +V  IE D+     L
Sbjct: 6   QNFLINPKIADYIVKEAEIKPNDIVLEIGPGKGILTGKLLE--KCEVYAIEIDKTLCEYL 63

Query: 87  KDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
             I        RL +I  DALKV+F KF       +I+AN+PY+I + LLF  +  +   
Sbjct: 64  NIIFQDDIKDGRLHLICGDALKVNFPKFN------KIVANIPYHISSPLLFKILEYE--- 114

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             +E   L+ Q E  ER+ A+  S  YGRLSV+  +  +A ++  +    F P P+V S 
Sbjct: 115 --FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFRPVPRVDSA 172

Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENL 264
           ++  I   +      + L +  ++ F +RRK +R         N+L +     + R E L
Sbjct: 173 IVK-ITKKDRFCYDKDKLNEFVRKLFEQRRKKIR---------NILGEVPY-GDRRVEEL 221

Query: 265 SIEDFCRIT 273
           S E+ C + 
Sbjct: 222 SPEEICEVV 230


>gi|225023525|ref|ZP_03712717.1| hypothetical protein EIKCOROL_00383 [Eikenella corrodens ATCC
           23834]
 gi|224943698|gb|EEG24907.1| hypothetical protein EIKCOROL_00383 [Eikenella corrodens ATCC
           23834]
          Length = 134

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 2/130 (1%)

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
           +  + QKEV ER+ A+  S  +GRLSV+  +  +   + D+ P  F P+PKV S V+  I
Sbjct: 1   MHFMLQKEVVERMVAEPGSNDFGRLSVMLQYFFEMEKLLDVPPEAFSPAPKVDSAVVRLI 60

Query: 210 PHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE 267
           P    I      E    + ++AF +RRKT+R +LK L  +N L  AGI    RAE+++ E
Sbjct: 61  PAKYRIGQAQDFEQFAALVKQAFHQRRKTIRNNLKGLADDNDLQAAGISPQERAEHIAPE 120

Query: 268 DFCRITNILT 277
            +  + N+L 
Sbjct: 121 KYVALANLLA 130


>gi|332233664|ref|XP_003266024.1| PREDICTED: probable dimethyladenosine transferase [Nomascus
           leucogenys]
          Length = 313

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 264 IIIPEDFSIAD--KIQQILT 281


>gi|125774831|ref|XP_001358667.1| GA11224 [Drosophila pseudoobscura pseudoobscura]
 gi|195145334|ref|XP_002013651.1| GL24250 [Drosophila persimilis]
 gi|54638406|gb|EAL27808.1| GA11224 [Drosophila pseudoobscura pseudoobscura]
 gi|194102594|gb|EDW24637.1| GL24250 [Drosophila persimilis]
          Length = 306

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +L   A+KVI  E 
Sbjct: 21  IVFNKDFGQHILKNPLVITTMLEKAALRPTDVVLEIGPGTGNMTVRMLE-KAKKVIACEI 79

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P   +L+I+  D LK +   FF++      IAN+PY I + L+F 
Sbjct: 80  DTRLAAELQKRVQATPMQPKLQILIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  +R+ A+     Y RLS+ T    +  M+  +  + F 
Sbjct: 134 LL---LHRPIFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFR 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           P PKV S+V+   P   P P        +T+ AF ++ KTL  + K
Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236


>gi|148907015|gb|ABR16651.1| unknown [Picea sitchensis]
          Length = 346

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 111/219 (50%), Gaps = 14/219 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+ L +  +++ I + +G      V+EIG G GNLT  LL + A+KVI +E D +
Sbjct: 24  QKSKGQHILKNPMLVQTIVQKAGIKSTDIVLEIGPGTGNLTMKLLEV-AKKVIAVELDPR 82

Query: 82  FFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L+     +    RL++IQ D LK +   +F++      +AN+PY I + L F  +S
Sbjct: 83  MVLELQRRVQGTSSAIRLQVIQGDVLKSELP-YFDVC-----VANIPYQISSPLTFKLLS 136

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P +    ++FQ+E   R+ A+     Y RLSV T    + + +  +  + F P P
Sbjct: 137 ---HRPIFRCAIIMFQREFAMRLVAKPGDNLYCRLSVNTQLLARVSHLLKVGKNNFRPPP 193

Query: 200 KVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTL 237
           KV S+V+   P  NP+ P   +    + +  F ++ KTL
Sbjct: 194 KVDSSVVRIEPR-NPLPPISFKEWDGMVRLCFNRKNKTL 231


>gi|302844675|ref|XP_002953877.1| hypothetical protein VOLCADRAFT_106150 [Volvox carteri f.
           nagariensis]
 gi|300260689|gb|EFJ44906.1| hypothetical protein VOLCADRAFT_106150 [Volvox carteri f.
           nagariensis]
          Length = 384

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 12/217 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +++ I + +G      V+EIG G GNLT  LL   A+KVI IE D + 
Sbjct: 37  KSKGQHILKNPLVVQAIVDKAGVKSTDVVLEIGPGTGNLTVKLLE-KAKKVIAIELDPRM 95

Query: 83  FPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L+     + + N L+II  D ++V+   +F++      +AN+PYNI + L F  ++ 
Sbjct: 96  VLELQRRVQGTAYANNLQIIHGDFMRVELP-YFDLC-----VANIPYNISSPLTFKLLAH 149

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P + +  +++Q E   R+ A+     Y RL+V T    + + +  +  + F P PK
Sbjct: 150 R---PAFRAAVIMYQHEFAMRLVAKPGDQLYSRLAVNTQLLARVSHLLKVGKNNFRPPPK 206

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           V S+V+   P   P P        + +  F ++ KTL
Sbjct: 207 VDSSVVRIEPRHPPPPVNFLEWDGLVRLCFSRKNKTL 243


>gi|7657198|ref|NP_055288.1| probable dimethyladenosine transferase [Homo sapiens]
 gi|114600097|ref|XP_517743.2| PREDICTED: probable dimethyladenosine transferase isoform 3 [Pan
           troglodytes]
 gi|27151492|sp|Q9UNQ2|DIMT1_HUMAN RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=DIM1 dimethyladenosine transferase 1-like;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|4050050|gb|AAC97955.1| putative dimethyladenosine transferase [Homo sapiens]
 gi|14790071|gb|AAH10874.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Homo
           sapiens]
 gi|119571770|gb|EAW51385.1| dimethyladenosine transferase, isoform CRA_b [Homo sapiens]
 gi|123981158|gb|ABM82408.1| dimethyladenosine transferase [synthetic construct]
 gi|123995987|gb|ABM85595.1| dimethyladenosine transferase [synthetic construct]
 gi|123996331|gb|ABM85767.1| dimethyladenosine transferase [synthetic construct]
 gi|307684642|dbj|BAJ20361.1| DIM1 dimethyladenosine transferase 1-like [synthetic construct]
          Length = 313

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 264 IIIPEDFSIAD--KIQQILT 281


>gi|149732873|ref|XP_001493943.1| PREDICTED: similar to Dimethyladenosine transferase [Equus
           caballus]
          Length = 313

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 118/260 (45%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KVI  E D +   
Sbjct: 34  IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPLAGKLQVMVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQRLLEKNYRIHCSVHN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 264 IIIPEDFSIAD--KIQQILT 281


>gi|296194498|ref|XP_002806669.1| PREDICTED: LOW QUALITY PROTEIN: probable dimethyladenosine
           transferase-like [Callithrix jacchus]
          Length = 313

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 264 IIIPEDFSIAD--KIQQILT 281


>gi|326433493|gb|EGD79063.1| dimethyladenosine transferase [Salpingoeca sp. ATCC 50818]
          Length = 310

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 128/281 (45%), Gaps = 36/281 (12%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  ++  I + +      TV+EIG G GNLT  LL   A K+I  E D + 
Sbjct: 32  KDFGQHILKNPLVVTGIIDKANIRSSDTVLEIGPGTGNLTIKLLE-KAGKLIAYEVDSRL 90

Query: 83  F-PILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              ++K +S + + ++L ++  DA+K     F         +AN+PY I +  +F  +  
Sbjct: 91  ADELVKRVSKTMYKSKLHLVLGDAIKNPLPAF------DVCVANMPYQISSPFVFKILK- 143

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P +    L+FQ+E   R+ A+    HY RLSV     +    +  +S + F P PK
Sbjct: 144 --HRPLFRCAVLMFQREFALRLVAKPGEEHYCRLSVNAQLLSNIEHVMKVSKNNFRPPPK 201

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR-------------QSLKRLGGE 247
           V S+V+  +PH       L     + + AF ++ +TL              Q+ K+LGGE
Sbjct: 202 VESSVVRIVPHRPAPDVDLSEFDGLLRIAFERKNRTLAAAFKKKGVVALLLQNFKQLGGE 261

Query: 248 ----------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                     ++L ++   +  R + L++ DF R+     D
Sbjct: 262 PPEDFKQFIVDVLTESDYASK-RPQQLAVADFLRLLKAFND 301


>gi|254456784|ref|ZP_05070212.1| dimethyladenosine transferase [Campylobacterales bacterium GD 1]
 gi|207085576|gb|EDZ62860.1| dimethyladenosine transferase [Campylobacterales bacterium GD 1]
          Length = 258

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 124/257 (48%), Gaps = 18/257 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK  GQNFL D  +L+KI E+    D   V+EIG G G+LT+ L+ +  + V   E 
Sbjct: 6   VVAKKKFGQNFLKDEAVLRKIIEAMPKSDN-KVVEIGPGLGDLTKYLVDV--KSVEAFEV 62

Query: 79  DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D     +L+    +     RL I   D L+        I  P  ++ANLPY I T ++  
Sbjct: 63  DTDLCKLLQSTFKEEIATKRLHINCGDVLQAWQSSL--IDEPYDLVANLPYYIATNIILK 120

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++     P  +++ ++ Q EV E+  A +    +G LSV+T    +A ++  + P  F 
Sbjct: 121 ALA----DPMCKNILVMVQLEVAEKFCAHEGEKVFGSLSVITQSVGEAHIVMQVPPTAFE 176

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P PK+ S V     + +      E L ++   AF + RKTL ++L     +++L +   E
Sbjct: 177 PPPKIDSAVFLIRKNADRSDEDFEGLLRV---AFKQPRKTLMKNLSANYEKSILQEVFNE 233

Query: 257 TNL----RAENLSIEDF 269
            +L    R   +S +D+
Sbjct: 234 LSLALTIRPHQVSTQDY 250


>gi|291453553|ref|ZP_06592943.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           albus J1074]
 gi|291356502|gb|EFE83404.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           albus J1074]
          Length = 287

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 131/276 (47%), Gaps = 18/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL   
Sbjct: 14  IRELATALGVRPTKQRGQNFVIDANTVRRIIRTADVRADDVVVEVGPGLGSLTLGLLET- 72

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A+ V  +E D      L   + ++ P R     ++  DAL+V         +P  ++ANL
Sbjct: 73  AQHVTAVEIDDTLAAALPATVEARLPARAAHFALVHSDALRV---TELPGPAPTALVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  + +P    +L ++ Q EV +R+ A   S  YG  SV   W  +  
Sbjct: 130 PYNVAVPVLLHML--EHFPTIERTL-VMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVK 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLK- 242
               I  +VF+P+P V S ++  +    P       E +  +   AF +RRKTLR +L  
Sbjct: 187 RAGAIGRNVFWPAPNVDSGLVSLVRRDGPPATTATREQVFAVVDAAFAQRRKTLRAALSG 246

Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
                   E  L  AG+    R E+L++E+F  I  
Sbjct: 247 WAGSAAAAEAALVAAGVSPQARGESLTVEEFAAIAE 282


>gi|257466334|ref|ZP_05630645.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917491|ref|ZP_07913731.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691366|gb|EFS28201.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 271

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 124/267 (46%), Gaps = 23/267 (8%)

Query: 22  KKYMGQNFLL-DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL     IL KI E S       ++EIG G G LT++LL   A+ V+ IE D+
Sbjct: 6   KKKYGQNFLTRQTEILAKIMEVSEVNSEDCILEIGPGEGALTELLLQ-EAKSVLNIEIDE 64

Query: 81  QFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              PIL K   +    RL  +  D L+V+F ++  +    +++AN+PY I + ++   I 
Sbjct: 65  DLKPILQKKFGNIEKYRL--VMGDVLEVNFAEY--MQERTKVVANIPYYITSPIIQKIIE 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             +     ++  L+ QKEVGERI A+K       L++   +  K   +F I    F P P
Sbjct: 121 NRS---LIQAAFLMVQKEVGERICAKKGKERSA-LTLSVEYFAKPEYLFTIPKEYFTPIP 176

Query: 200 KVTSTVIHFIPH-----LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENL 249
           KV S  I             +P  L    K  +  F  +RK L  +   LG      +  
Sbjct: 177 KVDSAFIGIRMKKEEEIAKQVPETL--FFKYVKAGFFNKRKNLANNFLALGFTKAEIKEK 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L   GI    RAENLS+ED+  +   L
Sbjct: 235 LATLGISETERAENLSLEDWFSVIKAL 261


>gi|328774301|gb|EGF84338.1| hypothetical protein BATDEDRAFT_22291 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 306

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 12/222 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ+ L +  ++  I + +       V+E+G G GN+T  +L   A+K IV+E D + 
Sbjct: 23  KSLGQHILKNPLVVNGIVDKACIKATDVVLEVGPGTGNVTVKILE-KAKKTIVVEMDPRL 81

Query: 83  FPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L  +   +    +LE+I  D LKVD   +F+I      I+N PY I + L F  +  
Sbjct: 82  AAELTKRVRGTAEQRKLEVIVGDFLKVDLP-YFDIC-----ISNTPYQISSSLTFKLLQH 135

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P W    L+FQ+E   R+ A+     Y RLS       K   +  +  + F P PK
Sbjct: 136 R---PLWRCSILMFQREFALRLVAKPGDALYCRLSANVQLLAKVDHVMKVGKNNFRPPPK 192

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           V S+V+   PH  P P   +    + +  FG++ +T+  + K
Sbjct: 193 VESSVVRIEPHNPPPPVNFDEWDGLLRILFGRKNRTVAANFK 234


>gi|304372921|ref|YP_003856130.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma
           hyorhinis HUB-1]
 gi|304309112|gb|ADM21592.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma
           hyorhinis HUB-1]
 gi|330723491|gb|AEC45861.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Mycoplasma hyorhinis MCLD]
          Length = 257

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 128/265 (48%), Gaps = 15/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D  ++ KI E + S D    +EIG G G +T  LL   A+ ++  E 
Sbjct: 4   IQAKKKFGQNFLKDDFVINKIIELANSQDE-DALEIGPGTGAITIPLLE-SAKSLLAYEI 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L++      ++  +  +D L+ D +     ++P  ++ANLPY I +++LF   
Sbjct: 62  DKDLIVCLEN--KIKSSKFMLKNEDFLEADLD----FTTPKILVANLPYYITSQILFKVF 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   ++S+ ++ Q+EV +RI A++ +  + +LS+             I P  F P 
Sbjct: 116 ENVNK---FKSMLIMVQEEVADRIVAKEKTSAFSKLSLACQLVADVKKELKILPSSFSPQ 172

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           PKV S ++ F    N  P  ++     T++ F  +RKT   +L     +  + +  ++ N
Sbjct: 173 PKVNSALVSFKFKKNLNPEYIKGFLDFTKKCFSMKRKTFYNNLSTFLNQEKIKELYVKFN 232

Query: 259 L----RAENLSIEDFCRITNILTDN 279
           L    R + +S+  + +I + + ++
Sbjct: 233 LNYNIRPQQISLNQYIQIYDFIKNS 257


>gi|257126070|ref|YP_003164184.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b]
 gi|257050009|gb|ACV39193.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b]
          Length = 287

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 125/271 (46%), Gaps = 24/271 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D N+   I + +   +   V+EIG G G LT+ L+   ++ +   E D  
Sbjct: 23  KKKYGQNFLNDSNLSDDILDVANIDEKTEVLEIGPGLGFLTEKLIE-NSKFLTAFEIDDD 81

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSP-IRIIANLPYNIGTRLLFN 136
             P L +   Q     ++I  D ++VD ++FF    N S   ++++AN+PY I + ++  
Sbjct: 82  LIPFL-NKKFQKKENFKLIHQDFMEVDLKEFFENEENKSKKNVKVVANIPYYITSPIINK 140

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT---GWRTKATMMFDISPH 193
            +    +    + + L+ QKEV ERI +Q   PH   +S+LT    +  +   +F +   
Sbjct: 141 LLE---YRENIDEIYLMVQKEVAERIASQ---PHSKNMSLLTHAVQFYAETEYLFTVPKE 194

Query: 194 VFFPSPKVTSTVIH---FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--- 247
            F P PKV S  +                E   K  +EAF  +RK++  +L +LG     
Sbjct: 195 KFDPVPKVDSAFLGIKILKDKRYESQISEEKYFKYLKEAFSNKRKSIANNLMKLGFSKDV 254

Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             N L + G     R E  S+++F     IL
Sbjct: 255 VGNALEKVGKTRLARTEEFSVQEFIDFIGIL 285


>gi|242210765|ref|XP_002471224.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729783|gb|EED83652.1| predicted protein [Postia placenta Mad-698-R]
          Length = 322

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 117/256 (45%), Gaps = 13/256 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           +H  I   +  GQ+ L +    + I +++       V+E+G G GNLT  +L   A+ V 
Sbjct: 33  AHNPIFNTERFGQHILKNPQTAQSIVDTANLRPTDKVLEVGPGTGNLTVRILE-KAKHVT 91

Query: 75  VIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            +E D +    L       P   +LEI+  D +K     +F++      I+N PY I + 
Sbjct: 92  AVEMDPRMAAELTKRVQGKPEQRKLEIMIGDFVKATL-PYFDVC-----ISNTPYQISSP 145

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           L+F  +S     P + +  L+FQ+E   R+ A+  S  + RLS       K  ++  +S 
Sbjct: 146 LIFRLLSHR---PLFRTAILMFQREFAMRLVARPGSEMWSRLSANVQLYAKVDLVMHVSK 202

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           + F P PKV S+VI  +P   P P        + +  FG+R K +  + +  G   +L +
Sbjct: 203 NNFRPPPKVESSVIRLVPRDPPPPVEFGEFDGLARIVFGRRNKMIHANFQAKGVMEML-E 261

Query: 253 AGIETNLRAENLSIED 268
           +   T     N+ IED
Sbjct: 262 SNWRTWASVNNVMIED 277


>gi|170097177|ref|XP_001879808.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645211|gb|EDR09459.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 290

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 13/253 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84
           GQ+ L +    +KI +++       V+E+G G GNLT  +L   A+ V  +E D +    
Sbjct: 12  GQHILKNPATAQKIVDAANLKPTDKVMEVGPGTGNLTVKILE-KAKHVTAVEMDPRMAAE 70

Query: 85  ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           ++K +      R LE+I  D +KVD   +F +      I+N PY I + L+F  +S    
Sbjct: 71  VIKRVQGTPEQRKLEVIIGDFVKVDM-PYFEVC-----ISNTPYQISSPLVFRLLSHR-- 122

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P +    L+FQ+E   R+ A+  +  + RLS       K   + ++S + F P P+V S
Sbjct: 123 -PLFRVAILMFQREFAMRLVARPGTALWSRLSANVQLYAKVDNIINVSRNDFRPPPQVES 181

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           +VI  +P   P P   E    + +  F +  KT+R + +  G   +L Q    T L  ++
Sbjct: 182 SVIRLVPIDPPPPVKFEEFDGLNRIIFSRPNKTVRGNFQAKGVMKMLEQ-NRRTWLAMQD 240

Query: 264 LSIEDFCRITNIL 276
           + ++D   I  +L
Sbjct: 241 MPVDDTTSINTLL 253


>gi|296140913|ref|YP_003648156.1| dimethyladenosine transferase [Tsukamurella paurometabola DSM
           20162]
 gi|296029047|gb|ADG79817.1| dimethyladenosine transferase [Tsukamurella paurometabola DSM
           20162]
          Length = 310

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 130/283 (45%), Gaps = 26/283 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D N ++KI  ++G       +E+G G G+LT  LL   
Sbjct: 18  IRGLAGQLSVRPTKQLGQNFVHDPNTVRKIVAAAGVRPDDIALEVGPGLGSLTLALLDA- 76

Query: 70  ARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-----SPIR 120
           A  V  +E D    QQ    + D + +    L +I +DALKV  E+    +     +P  
Sbjct: 77  AAAVTAVEIDPVLAQQLPQTVGDRAPELAGNLTVIGEDALKVTGEQLVAATGRDRGAPTV 136

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+   +L + ++     P   ++ ++ Q EV +R+ A   S  YG  SV   +
Sbjct: 137 LVANLPYNVAVPVLLHLLAEV---PTLRTVLVMVQLEVADRLAAGPGSRVYGVPSVKAAY 193

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-----IPCCLESLKKITQEAFGKRRK 235
                    +   VF+P P V S ++    H +P     +P     L      AF +RRK
Sbjct: 194 YGAVRKAGTVGRAVFWPEPNVESGLVRIDLH-DPADRPDVPRA--DLWAAIDGAFAQRRK 250

Query: 236 TLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           TLR +L    G        L  AG++   R E L+++ F  I 
Sbjct: 251 TLRAALSGWAGSPALAEEALVAAGVDPRERGEKLTVDQFAAIA 293


>gi|225717294|gb|ACO14493.1| Probable dimethyladenosine transferase [Esox lucius]
          Length = 306

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 12/230 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  ++  I E +       V+E+G G GN+T  LL   A+KV+    D +   
Sbjct: 27  LGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACGLDGRLVA 85

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P   +L+I+  D LK +   FF++      +ANLPY I +  +F  +    
Sbjct: 86  ELQKRVQCTPMQAKLQILVGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 136

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 137 HRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 196

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           S+V+   P   P P   +    + + AF ++ KTL    K    E LL +
Sbjct: 197 SSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLEK 246


>gi|312085450|ref|XP_003144684.1| hypothetical protein LOAG_09107 [Loa loa]
 gi|307760150|gb|EFO19384.1| hypothetical protein LOAG_09107 [Loa loa]
          Length = 276

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 12/190 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKV 107
           TV E+G+G GNLT +L+   A+KVI  E D++    LK   I + H  +LE+ Q D +K+
Sbjct: 22  TVFEVGSGTGNLTVVLME-KAKKVIACEIDRRMIAELKKRVIGTSHQQKLEMKQGDVIKM 80

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           ++  FF++      IANLPY I +  +F  +     P +     L+FQKE  +R+ A+  
Sbjct: 81  EWP-FFDVC-----IANLPYQISSPFVFRMLLQRPLPRY---AVLMFQKEFADRLLAKPG 131

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227
           S  Y RLSV   +  +   +  +    F P PKV S V+   P   P     +    + +
Sbjct: 132 SKLYCRLSVNVQFLAQVEHLMKVKRTEFRPPPKVDSAVVRIAPRNPPPQINFQEWDNLLR 191

Query: 228 EAFGKRRKTL 237
             F ++ KTL
Sbjct: 192 IVFLRKNKTL 201


>gi|109946738|ref|YP_663966.1| dimethyladenosine transferase [Helicobacter acinonychis str.
           Sheeba]
 gi|122973457|sp|Q17ZF9|RSMA_HELAH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|109713959|emb|CAJ98967.1| dimethyladenosine transferase [Helicobacter acinonychis str.
           Sheeba]
          Length = 271

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVSALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTYEIDS 61

Query: 79  D--QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++    LK    + P  LE+ + DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 62  SLCEKMRERLK--KQKKPFELELAEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                   P    L ++ QKEV  +   + +      LSVL       T++FD+ P  F 
Sbjct: 114 AFKD----PKCRGLLVMTQKEVALKFCTKDSQ---NALSVLAHAIGNVTLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIH-------------FIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQS 240
           PSPKV S++                IP L+    +    E+L+   +  F   RKTL  +
Sbjct: 167 PSPKVFSSMFEVIKEPLKEKALASLIPTLSFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|296394635|ref|YP_003659519.1| dimethyladenosine transferase [Segniliparus rotundus DSM 44985]
 gi|296181782|gb|ADG98688.1| dimethyladenosine transferase [Segniliparus rotundus DSM 44985]
          Length = 285

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 134/276 (48%), Gaps = 17/276 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +    ++ P K +GQNF+ D   +++I  ++G     +V+EIG G G+LT  LL + 
Sbjct: 15  IRELAERLEVRPTKRLGQNFVHDPGTIRRIVAAAGLRPQDSVLEIGPGLGSLTLGLLDV- 73

Query: 70  ARKVIVIEKDQQFFPILKD-ISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           A  V  +E D +    L   I+++ P R   +++ DAL +        ++P  ++ANLPY
Sbjct: 74  AHDVTAVEVDGKLADALSSTIAARAPGRQFHLVEKDALGLTGADL--PAAPTALVANLPY 131

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+   +    ++     P  ++  ++ Q EVG+R+ A+  +   G  ++ T +   A + 
Sbjct: 132 NVAVPVFLRALAEL---PSIDNALVMVQLEVGQRLAAKPGAREGGVPTLKTAFYGHAELA 188

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQSLKR 243
             ISP VF+P P V S ++ F    +      E  ++    +   AF  RRKTL   LK 
Sbjct: 189 GKISPEVFWPQPNVDSALVRFTRRADSPWATDEHTRRAVFALIDAAFASRRKTLGAVLKG 248

Query: 244 LGG--ENL---LHQAGIETNLRAENLSIEDFCRITN 274
             G  E L   L  AG+  + R E L I  F  + +
Sbjct: 249 WAGSPEELRRRLEAAGVPGSARGEELHIGQFVALAS 284


>gi|34556519|ref|NP_906334.1| dimethyladenosine transferase [Wolinella succinogenes DSM 1740]
 gi|34482233|emb|CAE09234.1| PUTATIVE DIMETHYLADENOSINE TRANSFERASE 16S RRNA DIMETHYLASEEC 2.1.1
           [Wolinella succinogenes]
          Length = 239

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 15/234 (6%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALK 106
           + V+E+G G G+LT  LL  G   V+  E D    P L+    +  +  R EI   D ++
Sbjct: 1   MGVVEVGPGLGDLTNKLL--GFWDVLAFEVDTDLRPHLEKRFQKELSIGRFEIRFGDVME 58

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
              EK   I  P  +++NLPY + T ++   +      P   SL ++ QKEV E+  A+ 
Sbjct: 59  EWREKRSLIPRPYVLVSNLPYYVATAIILKALK----DPMCHSLVVMVQKEVAEKFCARS 114

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
               +  LSV+T    ++ ++F++ P  F P+PKVTS V   + H   +   LE L ++ 
Sbjct: 115 GESDFSALSVITESYGESELLFEVPPQAFEPAPKVTSAVFRVVKHHGEVAEGLEELLRL- 173

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL----RAENLSIEDFCRITNIL 276
             AF   RK + ++L      + L +A    NL    RA  L    + R+  IL
Sbjct: 174 --AFSAPRKKVLKNLASGYETSRLKEAFGALNLKEEARAHELETSHYHRLLKIL 225


>gi|257051708|ref|YP_003129541.1| dimethyladenosine transferase [Halorhabdus utahensis DSM 12940]
 gi|256690471|gb|ACV10808.1| dimethyladenosine transferase [Halorhabdus utahensis DSM 12940]
          Length = 292

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 118/267 (44%), Gaps = 36/267 (13%)

Query: 27  QNFLLDLNILKKIA--ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           Q+FL+D  +L +I    +   +D   V+EIGAG G LT  LL + A  V  +E+D     
Sbjct: 34  QHFLVDDRVLDRIPTYATEAGIDLGHVLEIGAGNGALTDRLLAV-ADWVTAVERDPDLAA 92

Query: 85  ILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+     +    RL +I+ DAL+VD   +         I+NLPY   + +LF  +    
Sbjct: 93  FLRTEFADAIEAGRLTVIEGDALEVDLPDY------TASISNLPYGASSEILFRLL---- 142

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             P  + L  + Q E  +R+ A   S  YGRLSV  G      ++  + P  F P P V 
Sbjct: 143 --PAGKPLIAMVQAEFADRMAADPGSDDYGRLSVTAGHYADVEVVEPVPPEAFSPPPAVD 200

Query: 203 STVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET---- 257
           S ++  +P   N      +      +  F +RRKT+R  ++     N  H +G++     
Sbjct: 201 SALVRALPREPNYTVPDDDFFLGFVKAVFTQRRKTVRNGIR-----NTAHISGLDDPDAV 255

Query: 258 ---------NLRAENLSIEDFCRITNI 275
                      RA +LS  DF  + ++
Sbjct: 256 VDAADEELLRKRAGDLSPTDFAELASL 282


>gi|118103858|ref|XP_424746.2| PREDICTED: similar to DIMT1L protein [Gallus gallus]
          Length = 259

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 110/237 (46%), Gaps = 13/237 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I E +       V+E+G G GNLT  +L    +KVI  E D +    
Sbjct: 23  GQHILKNPLVVNSIIEKAALRRTDVVLEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 81

Query: 86  LKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+     +   N+LEI   D LK +   FF+       +ANLPY I +  +F  +     
Sbjct: 82  LQKRVQGTCLANKLEIKVGDVLKTELP-FFDAC-----VANLPYQISSPFVFKLL---LH 132

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            PF+    L+FQ+E   R+ A+  S  Y RLS+ T    +   +  +  + F P PKV S
Sbjct: 133 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVES 192

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL-HQAGIETNL 259
           +V+   P   P P   +    + + AF ++ KTL  + K    E LL H   I  +L
Sbjct: 193 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDHNYRIHCSL 249


>gi|222480514|ref|YP_002566751.1| dimethyladenosine transferase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453416|gb|ACM57681.1| dimethyladenosine transferase [Halorubrum lacusprofundi ATCC 49239]
          Length = 303

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 112/260 (43%), Gaps = 32/260 (12%)

Query: 27  QNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTL-----------GARKVI 74
           Q+FL+D  +L +I        D   ++EIG G G LT  LL                 + 
Sbjct: 34  QHFLVDDRVLDRIPGYLPDDADTSHLLEIGGGAGALTDRLLAAITSSADTDTAPAPGHLS 93

Query: 75  VIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           VIE+D  F   L++   ++     L++I+ DAL VD   F         +ANLPY + + 
Sbjct: 94  VIERDGTFADFLREEFATAIDDGLLDVIEGDALDVDLPDF------TACVANLPYGVSSE 147

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           + F  +      P  + L L+FQ E  ER+ A      YGRLSV         ++  +  
Sbjct: 148 IAFRLL------PEGKPLVLMFQAEFAERMVASAGESEYGRLSVSAQHYAAVEIVERVPK 201

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
             F P P V S V+  +P         E+   +  +  F +RRKT+R +++  G     H
Sbjct: 202 EAFDPQPAVESAVVRCLPRDPDYEVGDEAFFLRFVKALFTQRRKTVRNAIRNTG-----H 256

Query: 252 QAGIETNLRAENLSIEDFCR 271
            +G++      + + ED  R
Sbjct: 257 ISGLDDPEAVVDAADEDLLR 276


>gi|223038498|ref|ZP_03608792.1| dimethyladenosine transferase [Campylobacter rectus RM3267]
 gi|222880355|gb|EEF15442.1| dimethyladenosine transferase [Campylobacter rectus RM3267]
          Length = 287

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 130/277 (46%), Gaps = 23/277 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D   L KI ++    D   ++EIGAG G+LT  +L +    V   E 
Sbjct: 4   IKAKKRFGQNFLQDEATLNKIIQAIPK-DTQNIVEIGAGLGDLTFRILRICG--VTSYEI 60

Query: 79  DQQFFPIL-KDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D + F +L K  +++  N RL++   DAL V +++      P  + ANLPY + T+++ +
Sbjct: 61  DTELFALLQKKFANEIQNGRLKLFCKDAL-VQWDESGLSDEPYFLAANLPYYVATKMILS 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +  +        + ++ QKEV  + +A+     +  L++L   +    ++FD+    F 
Sbjct: 120 AVEDERC----RGMVVMIQKEVALKFSAKSGDRDFSSLAILASLQGSCELLFDVDASCFN 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCC--------LESLKKITQEAFGKRRKT----LRQSLKRL 244
           P PKVTS+VI      N I            E  K   + AF   RKT    L Q  ++ 
Sbjct: 176 PPPKVTSSVIKLQKSKNLIGETGVFKSEFEYEKFKIYLKIAFNAPRKTLMRNLSQGFEKP 235

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRI-TNILTDNQ 280
             E +     +  N+R   L+++ +  I  N+  DN+
Sbjct: 236 KIERIFSLLNLSANIRPHELNVDLYLEIFKNLKEDNE 272


>gi|157736324|ref|YP_001489007.1| dimethyladenosine transferase [Arcobacter butzleri RM4018]
 gi|315635457|ref|ZP_07890723.1| dimethyladenosine transferase [Arcobacter butzleri JV22]
 gi|166987689|sp|A8EQW4|RSMA_ARCB4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157698178|gb|ABV66338.1| dimethyladenosine transferase [Arcobacter butzleri RM4018]
 gi|315480215|gb|EFU70882.1| dimethyladenosine transferase [Arcobacter butzleri JV22]
          Length = 265

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 16/247 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK  GQNFL D  IL KI +S  + +   ++EIG G G+LT+ L+    + +   E
Sbjct: 3   KVKAKKQYGQNFLKDSTILDKIIQSMPNNNN-HIVEIGPGLGDLTKNLVKY--KDLTAYE 59

Query: 78  KDQQFFPILKD---ISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRL 133
            D     ILK    I  +  N L++I  D L+  ++K  N+      +IANLPY I T +
Sbjct: 60  VDTDLIGILKSKFAIEIEKGN-LKLIHTDVLEA-WDKLKNLHDGKYDLIANLPYYIATNI 117

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW-RTKATMMFDISP 192
           +      +      E + ++ QKEV E+ TA+ N   Y  L ++T      + ++FD+  
Sbjct: 118 ILRAFEDE----LCEHIIVMVQKEVAEKFTAKTNDKEYSSLGIITELISINSKILFDVPA 173

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
             F P PKVTS++++    ++      +   K  +  F + RK L ++L  +  +N++ +
Sbjct: 174 EAFDPPPKVTSSILYIKKDMS--KSLDKDFNKFLKACFIQPRKKLSKNLTTIFDKNIIFE 231

Query: 253 AGIETNL 259
              E N+
Sbjct: 232 IYKELNI 238


>gi|269120656|ref|YP_003308833.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386]
 gi|268614534|gb|ACZ08902.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386]
          Length = 276

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 124/272 (45%), Gaps = 23/272 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL +  IL++I   +      TVIEIG G G LT+ L    A +V   E D  
Sbjct: 15  KKKYGQNFLENKVILEEIFSYADINKTDTVIEIGPGLGFLTESLAE-KAGQVYAFEIDDD 73

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              IL +  S+  N L+II  D +  D  +       I+++AN+PY I + ++   I   
Sbjct: 74  LVKILSEKFSKVEN-LKIIHTDFMDYDLSEIVEKEKNIKVVANIPYYITSPIVGKLIK-- 130

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +    + + ++ QKEV ERI+A   S     L+    +   A  +F +   +F P PKV
Sbjct: 131 -YRDSIDEIYIMVQKEVAERISAVSPSSDISLLTHAVQFFGNAEYLFTVKKELFNPVPKV 189

Query: 202 TSTVI--------HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----N 248
            S  +         +   ++          K  + AF  +RK+L  ++K LG +     +
Sbjct: 190 DSAFLGIKLYKDREYEKQIDEAEYF-----KYLKAAFSNKRKSLGNNMKNLGYDKQQTGS 244

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            L + G +   RAE  S+++F    N L D +
Sbjct: 245 ALEKTGKKPLARAEEFSVQEFIDFINALKDEK 276


>gi|224128336|ref|XP_002320304.1| predicted protein [Populus trichocarpa]
 gi|222861077|gb|EEE98619.1| predicted protein [Populus trichocarpa]
          Length = 353

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 14/200 (7%)

Query: 15  SHYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +HY+  I   K  GQ+ L +  ++  I + SG      V+EIG G GNLT+ LL  G + 
Sbjct: 20  NHYQGGISFHKSKGQHILKNPLLVDSIVQKSGIKSTDVVLEIGPGTGNLTKKLLEAG-KM 78

Query: 73  VIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           V+ IE D +    L+     +   NRL++IQ D LK D   +F+I      +AN+PY I 
Sbjct: 79  VVAIELDPRMVLELQRRFQGTAFSNRLKVIQGDVLKTDLP-YFDI-----CVANIPYQIS 132

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + L F  ++     P +    ++FQ+E   R+ AQ     Y RLSV T    + + +  +
Sbjct: 133 SPLTFKLLNHQ---PSFRCAIIMFQREFAMRLVAQPGDTLYCRLSVNTQLYARVSHLLKV 189

Query: 191 SPHVFFPSPKVTSTVIHFIP 210
             + F P PKV S+V+   P
Sbjct: 190 GKNNFRPPPKVDSSVVRIEP 209


>gi|313157110|gb|EFR56540.1| dimethyladenosine transferase [Alistipes sp. HGB5]
          Length = 383

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 22/247 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISSQHPN-RL 97
           A+++G  D   V+E+G G G LTQ LL    R+  ++    +  P  ++ + + +P    
Sbjct: 152 AKAAGRCD---VLEVGCGMGVLTQFLL----RRDDIVTYGAEIDPESVEYLHAHYPEFTP 204

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            +++ D LK++  + F     ++II N PYNI +++ F  +      P       + QKE
Sbjct: 205 RLMEGDFLKMNLRELF--PGGLKIIGNFPYNISSQIFFKVLENRDLVP---ECVGMIQKE 259

Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC 217
           V  R+     S  YG LSVL         +F ++  VF P PKV S VI    +      
Sbjct: 260 VAVRLAEPPGSKEYGILSVLLQAWYDIEYLFTVNETVFNPPPKVKSAVIRLRRNGVERLA 319

Query: 218 CLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL---RAENLSIEDFCRIT 273
           C E+L  K+ + +FG+RRK +R SL+ + G    +  G E      RAE LS+ DF  +T
Sbjct: 320 CDETLFVKVVKASFGQRRKMIRNSLRSVFG----NFGGAEHPFFTQRAEQLSVADFVELT 375

Query: 274 NILTDNQ 280
           + +  N+
Sbjct: 376 DWVAANR 382


>gi|226480668|emb|CAX73431.1| DIM1 dimethyladenosine transferase 1-like protein [Schistosoma
           japonicum]
          Length = 313

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 16/227 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  + E SG     +V+EIG+G GNLT  LL  G RKV   E D +    
Sbjct: 25  GQHILKNPLVITTMIEKSGIKSTDSVLEIGSGTGNLTVKLLEKG-RKVYAFEIDPRLVSE 83

Query: 86  LKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+    +S H ++LEI+  DA+K      F++      +ANLPY I +  +   I A   
Sbjct: 84  LQKRVQTSPHRSKLEILVGDAVKATSWPKFDLC-----VANLPYKISSPFIQRLIHAGRG 138

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              + +  ++FQKE  +R+TA+     Y RLS    +  K   +  IS + F P P+V S
Sbjct: 139 ---FRAAVVMFQKEFADRLTAKPGDKVYCRLSASAQFHFKIEQLMKISRNSFRPPPRVDS 195

Query: 204 TVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENL 249
            V+   P  +P+P  + S    + +  F ++ KT+  +   LGG+++
Sbjct: 196 AVVRIEPR-HPLPPVMHSEWDGLLRLVFARKNKTIGAN---LGGKSI 238


>gi|195449214|ref|XP_002071976.1| GK22567 [Drosophila willistoni]
 gi|194168061|gb|EDW82962.1| GK22567 [Drosophila willistoni]
          Length = 306

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 12/226 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I+  K  GQ+ L +  I+  + E +       V+EIG G GN+T  +L   ++KVI  E 
Sbjct: 21  IVFNKDFGQHILKNPLIITAMLEKAALRPTDVVLEIGPGTGNMTVRILE-KSKKVIACEI 79

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+      P   +L+++  D LK +   FF++      IAN+PY I + L+F 
Sbjct: 80  DTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IANVPYQISSPLIFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    L+FQ+E  +R+ A+     Y RLS+ T    +  M+  +  + F 
Sbjct: 134 LL---LHRPLFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFR 190

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           P PKV S+V+   P   P P        +T+ AF ++ KTL  + K
Sbjct: 191 PPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFK 236


>gi|212278079|gb|ACJ23054.1| KsgA [Neisseria gonorrhoeae]
          Length = 226

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 115/260 (44%), Gaps = 46/260 (17%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-A 140
               LK +     ++L I + D L+ DF     IS   +I+ NLPYNI T LLF     A
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---GISGKKKIVGNLPYNISTPLLFKLAEVA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        +  + QKEV ER+ A                                 +PK
Sbjct: 121 DDVA----DMHFMLQKEVVERMVA---------------------------------APK 143

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           + S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI   
Sbjct: 144 IDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGISPQ 203

Query: 259 LRAENLSIEDFCRITNILTD 278
            RAE+++ E +  ++N L D
Sbjct: 204 DRAEHIAPEKYVALSNYLAD 223


>gi|239981691|ref|ZP_04704215.1| dimethyladenosine transferase [Streptomyces albus J1074]
          Length = 267

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 126/265 (47%), Gaps = 18/265 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL   A+ V  +E D 
Sbjct: 5   PTKQRGQNFVIDANTVRRIIRTADVRADDVVVEVGPGLGSLTLGLLET-AQHVTAVEIDD 63

Query: 81  QFFPIL-KDISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                L   + ++ P R     ++  DAL+V         +P  ++ANLPYN+   +L +
Sbjct: 64  TLAAALPATVEARLPARAAHFALVHSDALRV---TELPGPAPTALVANLPYNVAVPVLLH 120

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +  + +P    +L ++ Q EV +R+ A   S  YG  SV   W  +      I  +VF+
Sbjct: 121 ML--EHFPTIERTL-VMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVKRAGAIGRNVFW 177

Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLK-----RLGGENL 249
           P+P V S ++  +    P       E +  +   AF +RRKTLR +L          E  
Sbjct: 178 PAPNVDSGLVSLVRRDGPPATTATREQVFAVVDAAFAQRRKTLRAALSGWAGSAAAAEAA 237

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
           L  AG+    R E+L++E+F  I  
Sbjct: 238 LVAAGVSPQARGESLTVEEFAAIAE 262


>gi|257076452|ref|ZP_05570813.1| dimethyladenosine transferase [Ferroplasma acidarmanus fer1]
          Length = 239

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 17/226 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KKY GQ FL D NI  K     G   G  V+EIG G G LT +LL+    K+  IE D +
Sbjct: 7   KKY-GQVFLNDKNIAAKEVRLLGIEPGDHVLEIGPGHGILTGILLSEPV-KLTAIEPDHR 64

Query: 82  FFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           F+  LK     H    +  II++  L  +   +F+      II N+PYNI + +LF  + 
Sbjct: 65  FYESLKISYHDHIVSGKFNIIKESFLDTE-PSYFD-----HIIGNIPYNISSPVLFKILD 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +     ++S  L+ QKE   R+ A+  +  Y R+++ T  R+   ++F+++  VF P P
Sbjct: 119 FN-----FKSSILMVQKEFARRLVARPGTKEYSRITINTSVRSTIKILFNVTRKVFSPVP 173

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            V S VI  +     +   L +  K   + F  RRK L   L   G
Sbjct: 174 DVDSAVISIMK--KDVDIDLANFDKFIAKIFSMRRKKLSTILNYNG 217


>gi|158258883|dbj|BAF85412.1| unnamed protein product [Homo sapiens]
          Length = 313

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 119/260 (45%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A++V+  E D +   
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKEVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 264 IIIPEDFSIAD--KIQQILT 281


>gi|288921307|ref|ZP_06415589.1| ribosomal RNA adenine methylase transferase [Frankia sp. EUN1f]
 gi|288347281|gb|EFC81576.1| ribosomal RNA adenine methylase transferase [Frankia sp. EUN1f]
          Length = 247

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 15/189 (7%)

Query: 95  NRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            RL +++ D L+V        +++P  + ANLPYN+   LL   +  + +P     L ++
Sbjct: 50  QRLHVVEADGLRVRPADLPAELAAPTVLAANLPYNVAVPLLLGLL--ERFPTIRRGLVMV 107

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213
            Q EV ER+TA      YG  SV   W   A +   +   VF+P P V S ++ F  +  
Sbjct: 108 -QAEVAERLTAPPGGRIYGVPSVKLAWYADARLAGAVPRPVFWPQPNVDSALVAF--NRR 164

Query: 214 PIPCCLESLK----KITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENL 264
           P P   +S +     +   AF +RRK LR +L    G     E ++  AG++   R E L
Sbjct: 165 PAPPGDDSARAEVFALVDAAFAQRRKMLRTALASWAGSAQRAEQIIRAAGVDPGARGETL 224

Query: 265 SIEDFCRIT 273
            +E + R+ 
Sbjct: 225 DVEAYARVA 233


>gi|74222329|dbj|BAE26964.1| unnamed protein product [Mus musculus]
          Length = 313

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 119/260 (45%), Gaps = 19/260 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+    D +   
Sbjct: 34  IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACGLDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPLASKLQVLVGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIET 257
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +       ++ 
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQN 263

Query: 258 NLRAENLSIEDFCRITNILT 277
            +  E+ SI D  +I  ILT
Sbjct: 264 TVIPEDFSIAD--KIQQILT 281


>gi|327348821|gb|EGE77678.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 383

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 22/251 (8%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+EIG G GNLT  +L   A+KVI +E D +   
Sbjct: 38  IGQHILKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAA 96

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            +       P   RLE++  D +K D   +F++      I+N PY I + L F  ++ D 
Sbjct: 97  EVTKRVQGKPEQKRLEVLLGDVIKTDLP-YFDV-----CISNTPYQISSPLTFKLLAIDP 150

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      +   +  +  + F P P V 
Sbjct: 151 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVE 207

Query: 203 STVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
           S+V+  +P  NP P    +    + + AF ++ KT+R S   LG  ++L    +E+N R 
Sbjct: 208 SSVVRIVPK-NPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLDM--LESNYRT 262

Query: 262 ----ENLSIED 268
                N+ +ED
Sbjct: 263 WCAQNNIPVED 273


>gi|198436563|ref|XP_002125054.1| PREDICTED: similar to GF16271, partial [Ciona intestinalis]
          Length = 381

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 122/262 (46%), Gaps = 18/262 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  + E +      TV+EIG G GN+T  +L     KVI  E D +   
Sbjct: 27  VGQHILKNPLIINGMVEKAALKATDTVLEIGPGTGNMTVKMLE-KVNKVIACEIDPRMSA 85

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+      P   +L ++  D LK++   FFN+      +ANLPY I + ++F  +    
Sbjct: 86  ELQKRVCGTPLQKKLHLMVGDVLKLESLPFFNVC-----VANLPYQISSPIVFKLL---L 137

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             P +    L+FQ+E  +R+ A+     Y RLS+ T    +  ++  +  + F P PKV 
Sbjct: 138 HRPLFRCAVLMFQREFAQRLVAKPGEKLYCRLSINTQLLARVDLLMKVGKNNFKPPPKVE 197

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGIETNLR 260
           S+V+   P   P P        + + AF ++ KTL   L R     E L     I  +L 
Sbjct: 198 SSVVRIEPRNPPPPINFTEWDGLVRIAFLRKNKTL-SGLFRTSSVLEMLEKNYRIHCSLN 256

Query: 261 AENLSIEDFC---RITNILTDN 279
            E +  +D C   ++ +IL +N
Sbjct: 257 NETVP-DDLCMKTKVCSILEEN 277


>gi|330508534|ref|YP_004384962.1| dimethyladenosine transferase [Methanosaeta concilii GP-6]
 gi|328929342|gb|AEB69144.1| dimethyladenosine transferase [Methanosaeta concilii GP-6]
          Length = 247

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 22/245 (8%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+FL+D +I+  I   +       V+EIG G G LT+ L     R V  +E D     
Sbjct: 3   LGQHFLIDRSIVDSIVSHADLGLEDWVLEIGPGEGILTRELAARAGR-VYAVEIDPD--- 58

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +   + +  PN + +I  DAL V   ++       +I++NLPYNI +++ +  +S     
Sbjct: 59  LAASLCNTAPNVM-VIHADALTVRLPQYN------KIVSNLPYNISSKITYRLLSR---- 107

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
           PF +   L+FQKE  +R+ A+  S  YGRL ++ G+ +   ++ ++S   F P P V S 
Sbjct: 108 PF-DLAVLMFQKEFAQRLKAEPASKIYGRLGMVAGFFSHIEILQNVSRKAFRPVPDVDSA 166

Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLR 260
           ++   P          +  ++    F  RRK +++ L   G + +    L Q+ I  N+R
Sbjct: 167 IVRLRPRTERPQVDPRAFMRLADILFRNRRKKVKKGLAAYGVDKMTLAELDQSLI--NMR 224

Query: 261 AENLS 265
            E L+
Sbjct: 225 PEELT 229


>gi|328866316|gb|EGG14701.1| dimethyladenosine transferase [Dictyostelium fasciculatum]
          Length = 319

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 92/187 (49%), Gaps = 12/187 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I+  I E +      TV+EIG G GNLT  LL    +KVI +E D + 
Sbjct: 37  KAYGQHLLKNPLIIDAIVEKAQLKSTDTVLEIGPGTGNLTMKLLE-SCKKVIAVEVDPRM 95

Query: 83  FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L    S  P  + L+II  D LK D   +F++      +AN+PY I + L F  ++ 
Sbjct: 96  AAELHKRVSTTPYASHLQIILGDFLKADLP-YFDVC-----VANVPYQISSPLTFKLLA- 148

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P + S  L+FQ E   R+ A+     Y RLSV T    K T + ++  + F P PK
Sbjct: 149 --HRPVFRSAVLMFQLEFAARLAARPGDSLYCRLSVNTQLLGKVTKLMNVGKNNFLPPPK 206

Query: 201 VTSTVIH 207
           V S V+ 
Sbjct: 207 VESAVVR 213


>gi|58259713|ref|XP_567269.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Cryptococcus neoformans
           var. neoformans JEC21]
 gi|134116780|ref|XP_773062.1| hypothetical protein CNBJ3380 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255682|gb|EAL18415.1| hypothetical protein CNBJ3380 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229319|gb|AAW45752.1| rRNA (adenine-N6,N6-)-dimethyltransferase, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 325

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 12/229 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  + + I + +       V+E+G G GNLT  +L    RKV+ +E D +    
Sbjct: 47  GQHILTNPLVAQGIVDKANLKPTDVVLEVGPGTGNLTVRILP-ACRKVVAVEMDPRMAAE 105

Query: 86  LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           ++   +      +LE+I  D +K D   +F++     +I+N PY I + L+F  +S    
Sbjct: 106 VQKRVLGKPEQKKLELIVGDFVKADLP-YFDV-----LISNTPYQISSPLVFKLLSQRPI 159

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P       L+FQ+E   R+ A  N+  +GRL+       +   +  +    F P P+V S
Sbjct: 160 P---RCAVLMFQREFALRLVATPNTKLWGRLAANVQLYARVEHVMKVGKGNFRPPPQVES 216

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           +V+  +P   P P   E    + +  F +  KTLR   K  G   LL +
Sbjct: 217 SVVRIMPRDPPPPVKFEEFDGLNRIIFSRANKTLRAGFKAKGVVELLEK 265


>gi|167394422|ref|XP_001733536.1| dimethyladenosine transferase [Entamoeba dispar SAW760]
 gi|165894697|gb|EDR22603.1| dimethyladenosine transferase, putative [Entamoeba dispar SAW760]
          Length = 252

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 13/196 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I ++I +++       V+EIG G GNLT  +L    +K+I IE D + 
Sbjct: 14  KSEGQHILKNPMIAQQIVDAAELRRTDVVLEIGPGTGNLTMKMLPF-CKKLIAIEIDPRM 72

Query: 83  FPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              LK   S   +  +LEIIQ D LKV+   +F++      ++N PY+I + L+F  ++ 
Sbjct: 73  AAELKKRVSVTDYVKKLEIIQGDFLKVELP-YFDVC-----VSNTPYSISSPLVFKLLNH 126

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P + S  L+FQ+E   R+ A+   P Y RLSV T        +  +  + F P PK
Sbjct: 127 R---PQFRSAVLMFQREFAMRLVAKPGDPLYCRLSVNTQLLADVFHVMKVGRNNFKPPPK 183

Query: 201 VTSTVIHFIPHLNPIP 216
           V S+V+  IP + P P
Sbjct: 184 VESSVVRMIP-VKPAP 198


>gi|119719407|ref|YP_919902.1| ribosomal RNA adenine methylase transferase [Thermofilum pendens
           Hrk 5]
 gi|119524527|gb|ABL77899.1| dimethyladenosine transferase [Thermofilum pendens Hrk 5]
          Length = 270

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 102/190 (53%), Gaps = 14/190 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+ +GQ+FL+D  +  +IA     ++G  V E+G G G+LT + L+  +  V   EKD+ 
Sbjct: 16  KRRLGQHFLVDDTVASRIA---SFVNGEDVYEVGCGLGSLT-LPLSERSAYVFCCEKDEA 71

Query: 82  FFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               L +++  +    ++I+  DAL++D  +  ++     +++N P+NI ++L+      
Sbjct: 72  LALFLSRELYRRGIGNVDIMVGDALRIDLSRSSHL-----VVSNTPFNISSQLVVKLCYD 126

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           +     +  L    Q+EV ER+ A+  +  YGRLSV++        +FD+ P+ F P PK
Sbjct: 127 EGLLKAYLGL----QREVAERLYAKPGTREYGRLSVISQLCFSIERLFDVPPNAFLPPPK 182

Query: 201 VTSTVIHFIP 210
           V ++ +  +P
Sbjct: 183 VFTSFVRLVP 192


>gi|229113716|ref|ZP_04243152.1| Dimethyladenosine transferase [Bacillus cereus Rock1-3]
 gi|228669713|gb|EEL25119.1| Dimethyladenosine transferase [Bacillus cereus Rock1-3]
          Length = 220

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 19/218 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D    F + F     + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +  +  P       ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+          ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTNETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   + +L +  I+   R E LSIE+F  ++N L
Sbjct: 177 FPKDKELLDRILTEVEIDPKRRGETLSIEEFATLSNAL 214


>gi|321258494|ref|XP_003193968.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Cryptococcus gattii
           WM276]
 gi|317460438|gb|ADV22181.1| rRNA (adenine-N6,N6-)-dimethyltransferase, putative [Cryptococcus
           gattii WM276]
          Length = 324

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 12/229 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  + + I + +       V+E+G G GNLT  +L    RKV+ +E D +    
Sbjct: 46  GQHILTNPLVAQGIVDKANLKPTDVVLEVGPGTGNLTVRILP-ACRKVVAVEMDPRMAAE 104

Query: 86  LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           ++   +      +LE+I  D +K D   +F++     +I+N PY I + L+F  +S    
Sbjct: 105 VQKRVLGKPEQKKLELIVGDFVKADLP-YFDV-----LISNTPYQISSPLVFKLLSQRPI 158

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P       L+FQ+E   R+ A  N+  +GRL+       +   +  +    F P P+V S
Sbjct: 159 P---RCAVLMFQREFALRLVATPNTKLWGRLAANVQLYARVEHVMKVGKGNFRPPPQVES 215

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           +V+  +P   P P   E    + +  F +  KTLR   K  G   LL +
Sbjct: 216 SVVRIMPRDPPPPVKFEEFDGLNRIIFSRANKTLRAGFKAKGVVELLEK 264


>gi|114600101|ref|XP_001136315.1| PREDICTED: dimethyladenosine transferase isoform 1 [Pan
           troglodytes]
 gi|297675339|ref|XP_002815640.1| PREDICTED: probable dimethyladenosine transferase-like isoform 2
           [Pongo abelii]
 gi|12803983|gb|AAH02841.1| DIMT1L protein [Homo sapiens]
          Length = 275

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 115/255 (45%), Gaps = 24/255 (9%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLLLHR- 145

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 146 --PFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL     E N R  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLL-----EKNYRIH 258

Query: 263 NLSIEDFCRITNILT 277
                  C + NI++
Sbjct: 259 -------CSVHNIVS 266


>gi|327262970|ref|XP_003216295.1| PREDICTED: probable dimethyladenosine transferase-like [Anolis
           carolinensis]
          Length = 328

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 115/257 (44%), Gaps = 22/257 (8%)

Query: 33  LNILKKIAESSGSLDGI---------TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           LN LK   +S+ S  G+          V+E+G G GN+T  +L    ++V+  E D +  
Sbjct: 48  LNWLKDTTKSNPSSAGMKHASLYPTDVVLEVGPGTGNMTVKMLE-KVKRVVACEVDVKLA 106

Query: 84  PILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L+      P  N+LEI   D LK D   FF+       +ANLPY I +  +F  +   
Sbjct: 107 GELQKRVQGTPLANKLEIKIGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLLLHR 160

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              PF+    L+FQ+E   R+ A+  SP Y RLSV T    +   +  +  + F P PKV
Sbjct: 161 ---PFFRCAVLMFQREFALRLVAKPGSPLYCRLSVNTQLLARVDHLMKVGKNNFKPPPKV 217

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S+V+   P   P P   +    + +  F ++ KTL         + LL Q     +   
Sbjct: 218 ESSVVRIEPKNPPPPINFQEWDGLLRIVFVRKNKTLAAVFNSTAVKRLLEQ-NYRIHCSQ 276

Query: 262 ENLSIEDFCRITNILTD 278
            NL I +   I N++ +
Sbjct: 277 NNLEIPENFNIGNLIHE 293


>gi|224373783|ref|YP_002608155.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) [Nautilia profundicola AmH]
 gi|223588383|gb|ACM92119.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) [Nautilia profundicola AmH]
          Length = 219

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 96/191 (50%), Gaps = 15/191 (7%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           VIEIG G G+LT+ LL    R+V   E D+    ILK    + PN L +   D L+   E
Sbjct: 8   VIEIGPGLGDLTEKLLE--KRRVTAYEIDKDLCEILK---KKFPN-LNLKCGDVLEFWQE 61

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              N      +IANLPY I T ++   +         +++ +L QKEV ++ +A+    +
Sbjct: 62  TLEN--EKYDLIANLPYYIATNIILKALKDKNA----KNILVLIQKEVADKFSAKAGDKN 115

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF 230
           Y  L++L     K   +FDI P  F P+PKVTS+VI F    N      E   K  + AF
Sbjct: 116 YSSLAILAQSVAKVKKLFDIPPGAFVPAPKVTSSVILFEKFENSFD---EEFAKFLKVAF 172

Query: 231 GKRRKTLRQSL 241
              RKTL+++L
Sbjct: 173 ANPRKTLKKNL 183


>gi|257452467|ref|ZP_05617766.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R]
 gi|317059008|ref|ZP_07923493.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R]
 gi|313684684|gb|EFS21519.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R]
          Length = 271

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 123/269 (45%), Gaps = 27/269 (10%)

Query: 22  KKYMGQNFLL-DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  GQNFL     IL KI E S       ++EIG G G LT++LL   A+ V+ IE D+
Sbjct: 6   KKKYGQNFLTRQTEILAKIMEVSEVNSEDCILEIGPGEGALTELLLQ-EAKSVLNIEIDE 64

Query: 81  QFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              PIL K   +    RL  +  D L+V+F ++  +    +++AN+PY I + ++   I 
Sbjct: 65  DLKPILQKKFGNIEKYRL--VMGDVLEVNFAEY--MQEGTKVVANIPYYITSPIIQKIIE 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             +     ++  L+ QKEVGERI A+K       L++   +  K   +F I    F P P
Sbjct: 121 NRS---LIQAAFLMVQKEVGERICAKKGKER-SALTLSVEYFAKPEYLFTIPKEYFTPIP 176

Query: 200 KVTSTVIHF-------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----E 247
           KV S  I         I    P         K  +  F  +RK L  +   LG      +
Sbjct: 177 KVDSAFIGIRMKKEEEIAKQAPETLFF----KYVKAGFFNKRKNLANNFLALGFTKAEIK 232

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             L   GI    RAENLS+ED+  +   L
Sbjct: 233 EKLAILGISETERAENLSLEDWFSVIKAL 261


>gi|125600382|gb|EAZ39958.1| hypothetical protein OsJ_24395 [Oryza sativa Japonica Group]
          Length = 358

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 19/221 (8%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   +    G  V+E+G G GNLT  LL   A +V  +E D   
Sbjct: 39  KPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVEID--- 95

Query: 83  FPILKDISSQH------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            P + D  +         ++L +I+ DA++ +F +F ++      +AN+PY I + L+  
Sbjct: 96  -PRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF-DV-----CVANIPYGISSPLIAK 148

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +     P  + + TLL QKE   R+ A      Y RL+        A ++ D+S   F 
Sbjct: 149 LLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFV 205

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           P PKV S+++   P        L      T+  FG++ KTL
Sbjct: 206 PMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTL 246


>gi|125558476|gb|EAZ04012.1| hypothetical protein OsI_26151 [Oryza sativa Indica Group]
          Length = 358

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 19/221 (8%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   +    G  V+E+G G GNLT  LL   A +V  +E D   
Sbjct: 39  KPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVEID--- 95

Query: 83  FPILKDISSQH------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            P + D  +         ++L +I+ DA++ +F +F ++      +AN+PY I + L+  
Sbjct: 96  -PRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF-DV-----CVANIPYGISSPLIAK 148

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +     P  + + TLL QKE   R+ A      Y RL+        A ++ D+S   F 
Sbjct: 149 LLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFV 205

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           P PKV S+++   P        L      T+  FG++ KTL
Sbjct: 206 PMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTL 246


>gi|119571771|gb|EAW51386.1| dimethyladenosine transferase, isoform CRA_c [Homo sapiens]
          Length = 266

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 115/255 (45%), Gaps = 24/255 (9%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S+V+   P   P P   +    + +  F ++ KTL  + K    + LL     E N R  
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLL-----EKNYRIH 258

Query: 263 NLSIEDFCRITNILT 277
                  C + NI++
Sbjct: 259 -------CSVHNIVS 266


>gi|222622078|gb|EEE56210.1| hypothetical protein OsJ_05183 [Oryza sativa Japonica Group]
          Length = 314

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 119/255 (46%), Gaps = 40/255 (15%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++++ S  + +P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL  
Sbjct: 60  TIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLDA 119

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPI 119
           GA  V  +EKD+    ++ D       +L+II++D  K +          EK  +     
Sbjct: 120 GA-TVFAVEKDKHMATLVNDRFGS-TEQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKYA 177

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLT 178
           ++++NLP+N+ T ++   +        +  + LL Q E   R   A   +P Y  ++V  
Sbjct: 178 KVVSNLPFNVSTEVVKLLLP---MGDVFSVMVLLLQDETALRFADASIQTPEYRPINVFV 234

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            + ++    F +    FFP PKV S                         AF  +RK LR
Sbjct: 235 NFYSEPEYKFKVERTNFFPQPKVNS-------------------------AFNGKRKMLR 269

Query: 239 QSLKRLGGENLLHQA 253
           +SL+ L   + +  A
Sbjct: 270 KSLQHLCSSSEIEAA 284


>gi|159107917|ref|XP_001704233.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803]
 gi|157432290|gb|EDO76559.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803]
          Length = 316

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 14/220 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  ++K I E +      TV+EIG G GNLT  LL   AR VI IE D + 
Sbjct: 8   KQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KARHVIAIEIDPRM 66

Query: 83  FPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLFNW 137
              LK   +  P    +  II  D  K+   +   F++      ++N PYNI + ++F  
Sbjct: 67  VSELKKRIAAIPEYRGKFTIIHKDFTKMPPSEIPPFDLC-----VSNCPYNISSGIVFRL 121

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +     P       L+FQ E  +R+ A+     Y RL+V T   +K  ++  +S + F P
Sbjct: 122 LEIQPLP---RKFVLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRNSFKP 178

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
            P V S V+   P   P    L+    +T+  F K+ KTL
Sbjct: 179 PPNVDSAVVEMYPVGPPPGLDLDEFNGLTRILFSKKNKTL 218


>gi|33862894|ref|NP_894454.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9313]
 gi|62900570|sp|Q7V7W0|RSMA_PROMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33634810|emb|CAE20796.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 280

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 13/254 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K   Q++L+D  +L +I +++       ++E+G G G LT+ LL   A  V  +E D+ 
Sbjct: 9   RKRFAQHWLIDAAVLTQILDAADVQPDDRLLEVGPGRGALTERLLASSASAVHAVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LK   +    R  + + D L V      +  +  +++AN+PYNI   LL   +   
Sbjct: 69  LVSGLKQRFADQ-ARFSLQEGDVLSVPL-TLADGRAATKVVANIPYNITGPLLERLLGRL 126

Query: 142 TWP---PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             P   P+ + L LL QKEV +RI A      +  LSV      + T +  + P  F P 
Sbjct: 127 DRPVDHPY-QRLVLLLQKEVAQRIRALPGQSCFSALSVRLQLLARCTTVCPVPPRSFKPP 185

Query: 199 PKVTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE--NLLH 251
           PKV S VI      P     P   + ++ + ++AF  RRK LR +L ++    E   L  
Sbjct: 186 PKVHSEVILIEPLAPEQRLEPLLAKRVESLLRQAFLARRKMLRNTLAKVLPAAELNALAD 245

Query: 252 QAGIETNLRAENLS 265
             GI    R + LS
Sbjct: 246 DLGISLQQRPQELS 259


>gi|115472299|ref|NP_001059748.1| Os07g0509600 [Oryza sativa Japonica Group]
 gi|113611284|dbj|BAF21662.1| Os07g0509600 [Oryza sativa Japonica Group]
          Length = 347

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 19/221 (8%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   +    G  V+E+G G GNLT  LL   A +V  +E D   
Sbjct: 28  KPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVEID--- 84

Query: 83  FPILKDISSQH------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            P + D  +         ++L +I+ DA++ +F +F ++      +AN+PY I + L+  
Sbjct: 85  -PRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF-DV-----CVANIPYGISSPLIAK 137

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +     P  + + TLL QKE   R+ A      Y RL+        A ++ D+S   F 
Sbjct: 138 LLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFV 194

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           P PKV S+++   P        L      T+  FG++ KTL
Sbjct: 195 PMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTL 235


>gi|308448554|ref|XP_003087684.1| hypothetical protein CRE_15249 [Caenorhabditis remanei]
 gi|308253631|gb|EFO97583.1| hypothetical protein CRE_15249 [Caenorhabditis remanei]
          Length = 131

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 2/125 (1%)

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
            + QKEV +RITA  N+  YGRLSV+  +  K T +F++ P  F P PKVTS V    P+
Sbjct: 3   FMLQKEVVDRITASPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNPPPKVTSAVFRLEPY 62

Query: 212 LN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269
              PI    E +L ++    F +RRKTLR SLK +  E+    AG++   R E L++  F
Sbjct: 63  ATKPIVAKSEKALARLVSHVFTQRRKTLRNSLKGMLLEDGFENAGVDPMARPETLTLAQF 122

Query: 270 CRITN 274
             +++
Sbjct: 123 VALSD 127


>gi|224090635|ref|XP_002188905.1| PREDICTED: putative putative dimethyladenosine transferase
           [Taeniopygia guttata]
          Length = 305

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 119/277 (42%), Gaps = 40/277 (14%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I + +       ++E+G G GNLT  +L    +KVI  E D +    
Sbjct: 27  GQHILKNPLVVNSIIDKAALRRTDVILEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 85

Query: 86  LKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+     +   N+LEI   D LK D   FF+       +ANLPY I +  +F  +     
Sbjct: 86  LQKRVQGTCLANKLEIKVGDILKTDLP-FFDAC-----VANLPYQISSPFVFKLL---LH 136

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            PF+    L+FQ+E   R+ A+  S  Y RLS+ T    +   +  +  + F P PKV S
Sbjct: 137 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVES 196

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----------LHQA 253
           +V+   P   P P   +    + + AF ++ KTL  + K    E L          LH  
Sbjct: 197 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDRNYQVHCSLHNT 256

Query: 254 GIETNL------------------RAENLSIEDFCRI 272
            I  N                   RA ++ I+DF R+
Sbjct: 257 EIPENFKIAEKIQTVLKDTGYSEKRARSMDIDDFIRL 293


>gi|262037354|ref|ZP_06010819.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264]
 gi|261748611|gb|EEY35985.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264]
          Length = 278

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 123/269 (45%), Gaps = 13/269 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K I KK  GQNFL D  +  +I E +       V+EIG G G LT+ L+   ++ +   E
Sbjct: 11  KNIAKKKYGQNFLTDGELSDRILEEADIDKNTEVVEIGPGLGFLTEKLIE-KSKHLTAFE 69

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D    P+L        N L ++  D L+++  ++      I+++AN+PY I + ++   
Sbjct: 70  IDDDLIPVLNKKFKDKDNFL-LVHKDFLEINLGEYLEDRENIKVVANIPYYITSPIINRL 128

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I    +      + L+ QKEV ERI+++  S +   L+    +  +   +F +    F P
Sbjct: 129 IE---FRDNISEIYLMVQKEVAERISSKPRSKNMSILTHAVQFFAETEYLFTVPKEKFDP 185

Query: 198 SPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GEN----L 249
            PKV S  +  +             E   K  ++AF  +RK++  +L  LG G+     +
Sbjct: 186 VPKVDSAFLKIVLLKDKRYESQISEEKYFKYLKKAFSNKRKSISNNLSELGFGKEKISGV 245

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278
           L + G  +  R E  S+++F     IL +
Sbjct: 246 LQKVGKTSLARTEEFSVQEFIDFIKILEN 274


>gi|313888579|ref|ZP_07822244.1| putative dimethyladenosine transferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845308|gb|EFR32704.1| putative dimethyladenosine transferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 223

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 28/220 (12%)

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNI---SSPIR 120
           L L A+KV+ +E D++    L+D+  +  +   +++I  D L++D EK           +
Sbjct: 5   LALRAKKVVAVEIDEK----LRDLHKETLDIENVKVIYGDFLELDLEKIVEEEFGDEGFK 60

Query: 121 IIANLPYNIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           ++ANLPY + T    +LL + ++         S+T++ QKEV +R+ AQ  +  YG LSV
Sbjct: 61  VVANLPYYVTTPIIEKLLLSKVN-------LISITVMVQKEVAKRLAAQPGNKDYGSLSV 113

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
              + T     F +   VF P P V S V++ +          + L KI + AF  RRKT
Sbjct: 114 FINYYTDCKYKFQVPSSVFMPKPNVDSAVVN-LKMKEREDLDTDFLFKIVRAAFTTRRKT 172

Query: 237 LRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDF 269
           L  S    G        +  L  +GI+   RAE LS+E+F
Sbjct: 173 LLNSFSNSGLPYSKDDIKRALELSGIDGGRRAETLSLEEF 212


>gi|299137112|ref|ZP_07030295.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX8]
 gi|298601627|gb|EFI57782.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX8]
          Length = 295

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 121/286 (42%), Gaps = 29/286 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA----------- 70
           K  +GQNFL+D +   +I+ES G     TV+EIG G G +T +L    A           
Sbjct: 4   KPKLGQNFLVDESACLRISESLGDTRARTVVEIGPGHGAITDLLAPRCALLHCIEFDPAL 63

Query: 71  -RKVIVIEKDQQFFPI---------LKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPI 119
            R++    ++     I         L  + SQ+ N   E    +   +  E   + ++ +
Sbjct: 64  ARELAFRFRNDPHVTIHNADILQTDLSQLESQNSNLEAESSSLNPSSLLAEPTPSPAATL 123

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            +I NLPY I + +L +   A        ++ L+ Q+EV ERI +   S  YG LS  T 
Sbjct: 124 DVIGNLPYYITSDILLHLFVAARKGILARAV-LMMQREVAERIASAPGSSDYGALSAFTQ 182

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
                T +F + P  F P P V STV+   F P    +    E      +  F ++RKTL
Sbjct: 183 LHAHVTNLFTLPPEAFSPPPDVYSTVLRLDFAPRFTELGVEPEGFNSFLRSTFAQKRKTL 242

Query: 238 RQSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILTDN 279
             +L+  G  +     +    I    R+E + +E    +   L+ N
Sbjct: 243 ANNLRVAGYSSAQLTSVWPTSIPAQARSEAVPLEAMAELYRALSTN 288


>gi|331229364|ref|XP_003327348.1| dimethyladenosine transferase dimethyltransferase [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309306338|gb|EFP82929.1| dimethyladenosine transferase dimethyltransferase [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 341

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 109/225 (48%), Gaps = 20/225 (8%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-- 82
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L    + + V+E D +   
Sbjct: 51  LGQHILKNPLVAQTIVDKANLKTTDKVLEVGPGTGNLTVKILEKNCKSLTVVEMDPRMAF 110

Query: 83  -----FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                F   KD++ +   +LEII  D LK +   +F++      I+N PY I + L+F  
Sbjct: 111 ELSKRFQNAKDLNFKR--KLEIIVGDFLKTELP-YFDV-----CISNTPYQISSPLVFKL 162

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P +    L+FQKE G R++A+  S  + RLSV     +K T + ++    F P
Sbjct: 163 LEHR---PLFRVAILMFQKEFGLRLSARPGSKLWSRLSVNVQLYSKVTHLMNVGKANFRP 219

Query: 198 SPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241
            P V S V+   P LNP P         +T+  F +R KT+R S 
Sbjct: 220 PPLVESCVVKIEP-LNPPPNIAFNEFDGLTRICFNRRNKTVRASF 263


>gi|325093055|gb|EGC46365.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces
           capsulatus H88]
          Length = 384

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 22/251 (8%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+EIG G GNLT  +L   A+KVI +E D +   
Sbjct: 38  IGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAA 96

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            +       P   RLE++  D +K D   +F++      I+N PY I + L F  ++ + 
Sbjct: 97  EVTKRVQGKPEQKRLEVLLGDVIKTDL-PYFDV-----CISNTPYQISSPLTFKLLATNP 150

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      +   +  +  + F P P V 
Sbjct: 151 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVE 207

Query: 203 STVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
           S+V+  +P  NP P    +    + + AF ++ KT+R S   LG  ++L+   +E+N R 
Sbjct: 208 SSVVRIVPK-NPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLNM--LESNYRT 262

Query: 262 ----ENLSIED 268
                N+ +ED
Sbjct: 263 WCAQNNIPVED 273


>gi|256389803|ref|YP_003111367.1| dimethyladenosine transferase [Catenulispora acidiphila DSM 44928]
 gi|256356029|gb|ACU69526.1| dimethyladenosine transferase [Catenulispora acidiphila DSM 44928]
          Length = 306

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 25/281 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF++D N +++I  +        V+E+G G G+LT  LL + 
Sbjct: 27  VRRLAEKLGVSPTKKLGQNFVIDPNTIRRIVRAGDVTAEDVVVEVGPGLGSLTLGLLDV- 85

Query: 70  ARKVIVIEKDQQFFPILKDISSQ-HPN------RLEIIQDDALKVDFEKFFNISSPIRII 122
           AR+V+ +E D      L D  ++  P         E+++ DAL++        S P  ++
Sbjct: 86  ARRVVAVEIDPVLAAALPDTLAEFAPGIAAGQAEFELVRADALRI---AELPGSPPTALV 142

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +  + +P    +L ++ Q EV +R+ A+     YG  SV   W  
Sbjct: 143 ANLPYNVAVPVLLHML--ERFPSIERTL-IMVQSEVADRLAAEPGGRVYGVPSVKARWYA 199

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238
                  I   VF+P+P V S ++        +P   ++ ++        AF +RRKTLR
Sbjct: 200 DVKRAGAIGRSVFWPAPNVDSGLVRL--DRRAVPPSTKAGRRDVFAAVDAAFAQRRKTLR 257

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274
            +L    G        L  AGI  + R E L++E+F R+  
Sbjct: 258 SALSGWAGSPAAAETALTAAGINPSARGETLTVEEFARLAE 298


>gi|255323625|ref|ZP_05364755.1| dimethyladenosine transferase [Campylobacter showae RM3277]
 gi|255299339|gb|EET78626.1| dimethyladenosine transferase [Campylobacter showae RM3277]
          Length = 287

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 129/277 (46%), Gaps = 23/277 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D   L KI ++    D   ++EIG G G+LT  +L +    V   E 
Sbjct: 4   IKAKKCFGQNFLHDEATLNKIIQAIPK-DTQNIVEIGPGLGDLTFRILRICG--VTSYEI 60

Query: 79  DQQFFPIL-KDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D + F +L K  +++  N RL++   DAL    E   +   P  + ANLPY + T+++ N
Sbjct: 61  DTELFALLQKKFANEIQNGRLKLFCKDALDQWSEDGLSYE-PYFLAANLPYYVATKMILN 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I  +        L ++ QKEV  + +A+     +  L++L   +    ++FD++   F 
Sbjct: 120 AIEDEKC----RGLVVMIQKEVALKFSAKSGDRDFSSLAILASLQGGCELLFDVAASCFN 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCC--------LESLKKITQEAFGKRRKTLRQSL----KRL 244
           P PKVTS+VI      N I            E  K   +  F   RKTL ++L    +R 
Sbjct: 176 PPPKVTSSVIKLQKSKNLIGETGVFKSKFEYEKFKTYLKIVFSAPRKTLMKNLSSSYERP 235

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRI-TNILTDNQ 280
             E +     +  ++R   L+++ +  +  N+  DN+
Sbjct: 236 EIERIFSMLNLSAHIRPHELNVDLYLEVFKNLKEDNE 272


>gi|126696263|ref|YP_001091149.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9301]
 gi|166221687|sp|A3PCS3|RSMA_PROM0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|126543306|gb|ABO17548.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 274

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 14/262 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL    +K+  IE D+ 
Sbjct: 9   KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTSKLLNSEIKKLHAIELDKD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS- 139
              +L D    + ++  + Q D L V+ +   +I+  I ++IAN+PYNI   +L  +I  
Sbjct: 69  LINLLND-KFNNNDKFSLQQGDILSVNLD---SINKKITKVIANIPYNITGPILDIFIGR 124

Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   +E +  L QK+V +RI +++ SP+ G LS+     +K   + D+ P  F P 
Sbjct: 125 LGIIRKYNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKRICDVPPSSFSPP 184

Query: 199 PKVTSTVIHFIPHLNP--IPCCLES-LKKITQEAFGKRRKTLRQSLKR-LGGE---NLLH 251
           PKV S+++ F P  N   +   LE  + K+ + +F  RRK LR +L   L  E    L  
Sbjct: 185 PKVFSSLVVFEPIKNDLRLDISLEKYIDKLLRISFNSRRKMLRNTLNTILSNEEINELSE 244

Query: 252 QAGIETNLRAENLSIEDFCRIT 273
            + +  NLR +++SI+ + ++ 
Sbjct: 245 SSKVCFNLRPQDISIDQWIKLA 266


>gi|331087257|ref|ZP_08336327.1| hypothetical protein HMPREF0987_02630 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408943|gb|EGG88404.1| hypothetical protein HMPREF0987_02630 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 211

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 17/174 (9%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y    +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 5   TLGNPQNTI-AVLQKYNFSFQKKFGQNFLIDTHVLDKIIRSAEITKDDFVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ  L   AR+V+ +E D+   PIL+D  S + N + +I +D LK+D  K     N   P
Sbjct: 64  TQ-YLACAAREVVAVEIDKALIPILEDTLSSYDN-VTVINEDVLKLDIVKLAQERNGGKP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           I+++ANLPY I T ++     +    P  +S+T++ QK  G R       PH G
Sbjct: 122 IKVVANLPYYITTPIIMGLFESHV--PV-QSITVMVQKR-GRR-------PHAG 164


>gi|237751435|ref|ZP_04581915.1| dimethyladenosine transferase [Helicobacter bilis ATCC 43879]
 gi|229372801|gb|EEO23192.1| dimethyladenosine transferase [Helicobacter bilis ATCC 43879]
          Length = 313

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 127/271 (46%), Gaps = 28/271 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAES-----SGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIV 75
           KK +GQ+FL D  IL +I +S     +  +D  + +IE+G G G+LT+ LL+  +     
Sbjct: 45  KKSLGQHFLHDSVILDRIFQSIPHDIAAEIDKSVRLIEVGIGLGDLTKRLLSKYSLLAYE 104

Query: 76  IEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I+ D     I +   + H     NRL+++Q D LKV     + +SS   +++NLPY I T
Sbjct: 105 IDYD----LITQAEKNYHHEIETNRLQLVQADVLKVRHNDSYLLSSDYFLVSNLPYYIAT 160

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   +       F     ++ QKEV ++  A++    Y  LS+L       + +F + 
Sbjct: 161 AIILQALKDTHCKGFL----VMTQKEVAQKFCAKQKDSTYCSLSLLAQSFGDISYLFSVP 216

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----- 246
              F P PKV S V  F          LESL      AF   RK L  +L +        
Sbjct: 217 KEAFNPPPKVESAVFCFKRGKCHYTQDLESLLHF---AFLAPRKKLFSNLMQYDKLRDKA 273

Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNI 275
             +++     ++ N+RA  + ++++C + +I
Sbjct: 274 MLKHIFQTMQLDENVRAHEVGLQEYCDMLHI 304


>gi|42522227|ref|NP_967607.1| dimethyladenosine transferase [Bdellovibrio bacteriovorus HD100]
 gi|62900539|sp|Q6MQ47|RSMA_BDEBA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|39574758|emb|CAE78600.1| dimethyladenosine transferase [Bdellovibrio bacteriovorus HD100]
          Length = 274

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 131/277 (47%), Gaps = 21/277 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+     L+       I  KK +GQNFL+   ++ +I +   +     ++E+G GPG LT
Sbjct: 1   MSYSRERLQRAQEAMGIAAKKSLGQNFLVSDTVINRIIDQVKAFAPEELVEVGPGPGALT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            +LL L    + +IE D       ++        L +I+ DAL++D+++F+     +  +
Sbjct: 61  DLLLEL-NLPLQLIELDSAIAAYWRE------KGLTVIEQDALRLDWKQFYT-GKRVVFV 112

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           +NLPY I + ++   I          ++ L+FQKEV ++I    +S  YG LSV      
Sbjct: 113 SNLPYQISSSIV---IERSLENEGVAAMVLMFQKEVAQKIRGTVDSDLYGLLSVYAQAFW 169

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL- 241
           K   + D  P  F P PKV S V+ F   +       ++     + AF +RRK L+++L 
Sbjct: 170 KIETVTDAGPRDFQPPPKVASRVLSF-ERIESEVKNRKAFLTFVKCAFAQRRKLLKKNLS 228

Query: 242 -----KRLGGENL---LHQAGIETNLRAENLSIEDFC 270
                K+L  E +   L + G +   RAE LS + F 
Sbjct: 229 GLLSQKKLTEEQMVGWLAELGFKETARAEELSPKQFV 265


>gi|145591594|ref|YP_001153596.1| dimethyladenosine transferase [Pyrobaculum arsenaticum DSM 13514]
 gi|145283362|gb|ABP50944.1| dimethyladenosine transferase [Pyrobaculum arsenaticum DSM 13514]
          Length = 228

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 30/239 (12%)

Query: 23  KYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           + + Q+FL D ++ + I     G LD   VIE+G G G LT   L   ++ V  IE D+ 
Sbjct: 3   RRLSQHFLRDRSVAEFIVGLVPGGLD---VIEVGPGTGALT-FPLAEKSKTVYAIELDKS 58

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEK--FFNISSPIRIIANLPYNIGTRLLFNWIS 139
              + + + ++ P  + +I  DAL+V++ K  FF        ++N+PY+I + LL   ++
Sbjct: 59  ---LAEQLRARAPPNVVVIWGDALQVEWPKADFF--------VSNMPYSITSPLLLK-LA 106

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P       +  Q+EV ER+ A   +  YGRL+V      +  ++  + P VF P P
Sbjct: 107 RHRLP-----AVVTVQREVAERMAAVPGTEEYGRLTVAIQCMYEVEVVRVLPPRVFSPPP 161

Query: 200 KVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           KV S V+   P     PC    E+ ++ T + F  RRKTLR+ LK    +  ++Q  +E
Sbjct: 162 KVYSAVVTLRPK---APCVDDFEAFERFTAKLFSARRKTLRR-LKLAQSDKRVYQLTVE 216


>gi|225563099|gb|EEH11378.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces
           capsulatus G186AR]
 gi|240279925|gb|EER43430.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces
           capsulatus H143]
          Length = 384

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 120/251 (47%), Gaps = 22/251 (8%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+EIG G GNLT  +L   A+KVI +E D +   
Sbjct: 38  IGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAA 96

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            +       P   RLE++  D +K D   +F++      I+N PY I + L F  ++ + 
Sbjct: 97  EVTKRVQGKPEQKRLEVLLGDVIKTDL-PYFDV-----CISNTPYQISSPLTFKLLATNP 150

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      +   +  +  + F P P V 
Sbjct: 151 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVE 207

Query: 203 STVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
           S+V+  +P  NP P    +    + + AF ++ KT+R S   LG  ++L    +E+N R 
Sbjct: 208 SSVVRIVPK-NPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLDM--LESNYRT 262

Query: 262 ----ENLSIED 268
                N+ +ED
Sbjct: 263 WCAQNNIPVED 273


>gi|154174948|ref|YP_001407358.1| dimethyladenosine transferase [Campylobacter curvus 525.92]
 gi|171769251|sp|A7GVW6|RSMA_CAMC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|112802443|gb|EAT99787.1| dimethyladenosine transferase [Campylobacter curvus 525.92]
          Length = 285

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 35/283 (12%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK+ GQNFL D  +L KI ++    D   ++EIG G G+LT  +L + +  V   E 
Sbjct: 2   IRAKKHFGQNFLQDEAVLNKIIQAIPK-DTQNIVEIGPGLGDLTFKILQICS--VTAYEI 58

Query: 79  DQQFFPIL-KDISSQHPN-RLEIIQDDALK------VDFEKFFNISSPIRIIANLPYNIG 130
           D + F +L K  + +  N RL++   DAL+      V  + +F       ++ANLPY + 
Sbjct: 59  DSELFALLGKKFAKEVQNGRLKLFCKDALEKWDEGGVSEQGYF-------LVANLPYYVA 111

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T+++ + I  +        L ++ Q+EV  + +A+     +  L++L   +    ++FD+
Sbjct: 112 TKMILSAIDDEKC----RGLVVMIQREVALKFSAKSGESEFSSLAILANLQGSCELLFDV 167

Query: 191 SPHVFFPSPKVTSTVIHFIPH--------LNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           S   F P PKV S+VI             +       E  K   + AF   RKTL ++L 
Sbjct: 168 SAQCFNPPPKVVSSVIKIQKSKILLGESGIFKDKFEYEKFKIFLKIAFASPRKTLMKNLS 227

Query: 243 ----RLGGENLLHQAGIETNLRAENLSIEDFCRI-TNILTDNQ 280
               +     L  +  +   +R   L++E + +I  N+  DN+
Sbjct: 228 AKFDKFELNTLFAELNLSPAIRPHELNVELYLKIFENLKEDNE 270


>gi|269860446|ref|XP_002649944.1| dimethyladenosine transferase [Enterocytozoon bieneusi H348]
 gi|220066631|gb|EED44106.1| dimethyladenosine transferase [Enterocytozoon bieneusi H348]
          Length = 275

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 17/225 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK   Q+ L++ N++  I + +       V+EIGAG GN+T  LL   A+KVI  EKD++
Sbjct: 6   KKSESQHMLVNNNLIDVIIDKAKIKHTDIVLEIGAGTGNITMKLLP-KAKKVIAYEKDKK 64

Query: 82  FF-PILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               I   + +Q     +L +IQDD L+ +   F       + I+N+P+NI   ++   +
Sbjct: 65  LANEIQNKLYTQKLLKAKLHLIQDDVLENNLPHF------DKCISNIPFNISLPIILKLM 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           ++      +++  +L QKE  +R+T++  S  Y RLSV+     K   +  +  + F P 
Sbjct: 119 NS-----HFKNAFILVQKEFADRLTSRPGSKDYSRLSVIVQLFAKVECVLKVKKNNFIPQ 173

Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK 242
           PKV +  I   P + P P   L     + +  F ++ KTL  +LK
Sbjct: 174 PKVDTCFIKIEPKV-PRPSLDLTEFDNLLKICFSRKNKTLMSNLK 217


>gi|242045762|ref|XP_002460752.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor]
 gi|241924129|gb|EER97273.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor]
          Length = 356

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 25/224 (11%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   +    G  ++E+G G GNLT  LL   A +V+ +E D + 
Sbjct: 46  KPRGQHLLTNPRVLDAIVRRAAISSGDAILEVGPGTGNLTARLLASHAARVVAVEIDPR- 104

Query: 83  FPILKDISSQH-----PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RL 133
             +++ ++++       ++L +I  DA++V+F + F++      +AN+PY I +    +L
Sbjct: 105 --MVESVTARAAALGLADKLTVIAGDAVEVEFPE-FDV-----CVANIPYGISSPLIAKL 156

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF        P  + + TLL QKE   R+ A      Y RL+          ++ D+S  
Sbjct: 157 LFG-------PYRFRTATLLLQKEFARRLVATPGDGEYNRLAANVRLVADVRLLMDVSKR 209

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
            F P P+V S+++   P        +      T+  FG++ KTL
Sbjct: 210 DFVPMPRVDSSLVEIRPRGIAPGVDVSEWLAFTRACFGQKNKTL 253


>gi|170291019|ref|YP_001737835.1| ribosomal RNA adenine methylase transferase [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175099|gb|ACB08152.1| ribosomal RNA adenine methylase transferase [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 243

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 113/218 (51%), Gaps = 16/218 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ ++    +K IA+    + G  VIE+GAG GNL++ +L+   RK+I++EKD++F  
Sbjct: 5   LGQHMMVSRKWIKLIADLL-DVRGDEVIELGAGTGNLSEEILSRDPRKLILVEKDERFVD 63

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           IL++       R+EI     L+ D  +   +    +I +N PY + ++L+     ++   
Sbjct: 64  ILRE-KFGGDERVEI-----LRADIRELLPLRVE-KIASNPPYYLSSQLIIGLARSE--- 113

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             +    L  QKE  ER+ A+  +  YG LSV+     K +++  +    F P PKV S 
Sbjct: 114 --FRRAVLTLQKEFAERLIAKPGTEKYGSLSVIASLLLKVSLVSIVDRRSFNPVPKVDSA 171

Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           ++   P  + +    + + K  +  F +R++ L+ SLK
Sbjct: 172 ILVIEPKQDELR---DQILKYCKLIFSRRKRELKNSLK 206


>gi|25146882|ref|NP_496061.2| hypothetical protein E02H1.1 [Caenorhabditis elegans]
 gi|27808654|sp|Q09522|DIMT1_CAEEL RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|20803714|emb|CAA87382.2| C. elegans protein E02H1.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 308

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 12/214 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I E S      TV+E+G G GNLT  +L + A+ VI  E D +    
Sbjct: 29  GQHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEV-AKTVIACEIDPRMIAE 87

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           +K      P  N+L++   D +K+++  FF++      +ANLPY I +  +   +     
Sbjct: 88  VKKRVMGTPLQNKLQVNGGDVMKMEWP-FFDVC-----VANLPYQISSPFVQKLLLHRPL 141

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P +     L+FQKE  +R+ A+     Y RLSV      K  M+  +    F P PKV S
Sbjct: 142 PRYA---VLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDS 198

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
            V+   P   P P      + + +  F ++ KTL
Sbjct: 199 AVVRIAPKNPPPPVNFVEWEGLLRLCFMRKNKTL 232


>gi|253745520|gb|EET01398.1| Dimethyladenosine transferase [Giardia intestinalis ATCC 50581]
          Length = 319

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 14/220 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  ++K I E +      TV+EIG G GNLT  LL   A+ VI IE D + 
Sbjct: 8   KQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KAKHVIAIEIDPRM 66

Query: 83  FPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLFNW 137
              LK   +  P    +  II  D  K+   +   F++      ++N PYNI + ++F  
Sbjct: 67  VSELKKRIAAIPEYRGKFTIIHKDFTKMPATEIPTFDLC-----VSNCPYNISSGIVFRL 121

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P      L+FQ E  +R+ A+     Y RL+V T   +K  ++  +S + F P
Sbjct: 122 LEIQ---PLPRKFVLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRNSFKP 178

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
            P V S V+   P   P    L+    +T+  F K+ KTL
Sbjct: 179 PPNVDSAVVEMYPIGPPPGLDLDEFNGLTRILFSKKNKTL 218


>gi|256085330|ref|XP_002578875.1| dimethyladenosine transferase [Schistosoma mansoni]
 gi|238664262|emb|CAZ35113.1| dimethyladenosine transferase, putative [Schistosoma mansoni]
          Length = 313

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 109/219 (49%), Gaps = 13/219 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+ L +  ++  + E SG     +++EIG+G GNLT  LL  G RKV   E D +
Sbjct: 21  QKTKGQHILKNPLVINTMVEKSGIKSTDSLLEIGSGTGNLTVKLLEKG-RKVYAFEIDPR 79

Query: 82  FFPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L+    +S H  +LEI+  DA+K      F++      IANLPY I +  +   IS
Sbjct: 80  MVSELQKRVQTSLHRTKLEILVGDAIKAKSWPKFDL-----CIANLPYKISSPFIQRLIS 134

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A      + +  ++ QKE  +R+TA+     Y RLS    +  K   +  I+ + F P P
Sbjct: 135 AGHG---FRAAVVMLQKEFADRLTAKSGDKLYCRLSASAQFHFKIEQLMKINRNSFRPPP 191

Query: 200 KVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTL 237
           +V S V+   P  +P+P  + S    + +  F ++ KT+
Sbjct: 192 RVDSAVVRIEPR-HPLPPVMHSEWDGLLRLVFARKNKTI 229


>gi|189218276|ref|YP_001938918.1| Dimethyladenosine transferase (rRNA methylation) [Methylacidiphilum
           infernorum V4]
 gi|189185134|gb|ACD82319.1| Dimethyladenosine transferase (rRNA methylation) [Methylacidiphilum
           infernorum V4]
          Length = 271

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 20/246 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI----TVIEIGAGPGNLTQML 65
           +K++LS   + P K +GQNFL+D N+ K I   +  L+G+     + EIG G G+LT+  
Sbjct: 6   IKSLLSSNHLSPSKKLGQNFLIDQNLAKFIVRET--LEGVPLPQEIYEIGPGLGSLTEFF 63

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L      +  IE D+ F  +L +  S +P R E+IQ +AL   F +  +    I ++ NL
Sbjct: 64  LQQNVF-LKAIEIDRGFCKVLLERFSANP-RFELIQANALDFSFPQ--STHGKI-LVGNL 118

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + LL          PF   +    Q+EV  R+ A+  +  +G LSVL  +  +  
Sbjct: 119 PYTISSPLLAKLALLAV--PF-PRMIFTLQQEVASRLMAKTRTKDFGALSVLMQYFFEIK 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            M  +   VF+P PK+ S V+ F P        +++ +K +  AF   R+   Q  K+LG
Sbjct: 176 KMRKVPKEVFYPVPKIESAVVFFEPKNTAF--RMDAPEKYSFYAFV--RRCFSQRRKKLG 231

Query: 246 GENLLH 251
              +LH
Sbjct: 232 --KILH 235


>gi|308160049|gb|EFO62557.1| Dimethyladenosine transferase [Giardia lamblia P15]
          Length = 319

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 115/261 (44%), Gaps = 27/261 (10%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  ++K I E +      TV+EIG G GNLT  LL   A+ VI +E D + 
Sbjct: 8   KQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KAKHVIAVEIDPRM 66

Query: 83  FPILKDISSQHP---NRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLFNW 137
              LK   +  P    +  +I  D  K+   +   F++      ++N PYNI + ++F  
Sbjct: 67  VSELKKRIAAIPEYRGKFTVIHKDFTKMPPNEIPPFDLC-----VSNCPYNISSGIVFRL 121

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +     P       L+FQ E  +R+ A+     Y RL+V T   +K  ++  +S + F P
Sbjct: 122 LEIQPLP---RKFVLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRNSFKP 178

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT-------------LRQSLKRL 244
            P V S V+   P   P    L+    +T+  F K+ KT             L  ++ RL
Sbjct: 179 PPNVDSAVVEMYPVGPPPGLDLDEFNGLTRILFSKKNKTLGAIFKTRSLLNDLASNIARL 238

Query: 245 GGENLLHQAGIETNLRAENLS 265
              N LH+        + NLS
Sbjct: 239 DEINRLHKPAQPHQYESSNLS 259


>gi|260655277|ref|ZP_05860765.1| dimethyladenosine transferase [Jonquetella anthropi E3_33 E1]
 gi|260629725|gb|EEX47919.1| dimethyladenosine transferase [Jonquetella anthropi E3_33 E1]
          Length = 278

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 117/258 (45%), Gaps = 13/258 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           + + +  +GQNFL +  ++ +    +   +  TV+EIGAG G LT  LL   AR V   E
Sbjct: 20  RFVHRTQLGQNFLANGAVIDRAVARAELREDETVLEIGAGQGVLTSALLASPARFVHSFE 79

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D++    L  +     +RL +   D +     +   +  P  ++AN+PY+I T L++  
Sbjct: 80  IDRRLEQWLAPLEC---SRLALHWGDVMSFPLAELDPL--PTAVVANIPYHITTPLIWK- 133

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  +  P     L LL QKE  ER+ A   +     L V       A     +SP  F P
Sbjct: 134 VLEELAPRGLTRLVLLVQKEAAERLCAPPRTKARYPLGVTIEAMGNAETFMKVSPGSFVP 193

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG-----GENLLH 251
            PKV S ++H I  +      L +L +++ ++AF +RRK    SL+  G           
Sbjct: 194 PPKVWSALVH-IQLVRRHELALNALWRRLLRDAFAQRRKKALNSLEAAGRNKEETARAFQ 252

Query: 252 QAGIETNLRAENLSIEDF 269
              I  N RAE L+ + +
Sbjct: 253 DCSISPNARAEELTTDQW 270


>gi|325962647|ref|YP_004240553.1| dimethyladenosine transferase [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468734|gb|ADX72419.1| dimethyladenosine transferase [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 290

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 128/278 (46%), Gaps = 18/278 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     I P K +GQNF++D N +++I  ++      TV+E+G G G+LT  LL
Sbjct: 15  ASDIRRLAEEIGIRPTKTLGQNFVIDGNTIRRIVAAADIGPDETVLEVGPGLGSLTLGLL 74

Query: 67  TLGARKVIVIEKD----QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A  V+ +E D     +    +K+          ++  DA+KV          P  ++
Sbjct: 75  DAAA-SVVAVEIDPVLAAKLPETVKEWRPGAAGNFHLVHADAMKVTELPV----QPTALV 129

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + +    +P     L ++ Q EV +R+ A   S  YG  SV   W +
Sbjct: 130 ANLPYNVAVPVVLHLLQ--YFPSLRHGLVMV-QDEVADRLAAGPGSKTYGVPSVKAAWYS 186

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSL 241
           +      I  +VF+P+PK+ S ++ F     P      E +  +   AF +RRKTLR +L
Sbjct: 187 QMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPATTATREQVFAVVDAAFAQRRKTLRAAL 246

Query: 242 KRLG-----GENLLHQAGIETNLRAENLSIEDFCRITN 274
                     E  L  AG++   R E + I  F +I  
Sbjct: 247 AGWAGGAPEAERCLVAAGVDPTARGEVIDIGAFAKIAE 284


>gi|124806998|ref|XP_001350883.1| apicoplast dimethyladenosine synthase, putative [Plasmodium
           falciparum 3D7]
 gi|23497013|gb|AAN36563.1| apicoplast dimethyladenosine synthase, putative [Plasmodium
           falciparum 3D7]
          Length = 639

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 14/194 (7%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           DG  VIE+G G G +++ L +   + +  IE D +   I   IS   P   + I DD L+
Sbjct: 387 DGNGVIELGCGLGQISKYLFS-KYKNMTGIEIDSRALSI---ISRTMPG-FDFIHDDVLQ 441

Query: 107 VDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
           +++++   N  + + II NLP+ I +++LF  +    +  + E   +  Q EVGERI A+
Sbjct: 442 INYKELSINKKTKLTIIGNLPFYITSQILFCLLD---FHKYIEQAIVTIQYEVGERIVAK 498

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-----PHLNPIPCCLE 220
            N  +Y  LS+L    T   ++F I    F+P PKV + V+  I      +   I C L 
Sbjct: 499 PNQKNYSILSILFHLFTYPYLLFKIPSKAFYPVPKVQAAVMKIIFKNHESYYKHINCNLL 558

Query: 221 SLKKITQEAFGKRR 234
            LKKI + +F +RR
Sbjct: 559 FLKKILKYSFQQRR 572


>gi|15811125|gb|AAL08808.1|AF308662_1 hypothetical dimethyl adenosine transferase [Ehrlichia ruminantium]
          Length = 124

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 4/124 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           +Y I PKK + Q F+   +I  KI   +G++   ++IEIG G G +T  +L    +K+I 
Sbjct: 4   NYMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLIS 63

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           IEKD +  PI   I  +   + E I  DAL +D     NI+  P+++IANLPY+I T LL
Sbjct: 64  IEKDSRLLPIHDKIIKEFQGKYEFILSDALDIDLR---NIAKPPVKVIANLPYSIATLLL 120

Query: 135 FNWI 138
             WI
Sbjct: 121 IKWI 124


>gi|297824837|ref|XP_002880301.1| hypothetical protein ARALYDRAFT_904217 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326140|gb|EFH56560.1| hypothetical protein ARALYDRAFT_904217 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 352

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 14/201 (6%)

Query: 15  SHYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +HY+  I   K  GQ+ L +  ++  I + +G      ++EIG G GNLT+ LL  G ++
Sbjct: 20  NHYQGGISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KE 78

Query: 73  VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           VI +E D +    L+      P  NRL++IQ D LK +  +F +I      +AN+PY I 
Sbjct: 79  VIAVELDSRMVLELQRRFQGTPYSNRLKVIQGDVLKTELPRF-DI-----CVANIPYQIS 132

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + L F  +     P  +    +++Q+E   R+ AQ     Y RLSV T    + + +  +
Sbjct: 133 SPLTFKLL---FHPTSFRCAVIMYQREFAMRLVAQPGDNLYCRLSVNTQLYARVSHLLKV 189

Query: 191 SPHVFFPSPKVTSTVIHFIPH 211
             + F P PKV S+V+   P 
Sbjct: 190 GKNNFRPPPKVDSSVVRIEPR 210


>gi|313681244|ref|YP_004058982.1| dimethyladenosine transferase [Sulfuricurvum kujiense DSM 16994]
 gi|313154104|gb|ADR32782.1| dimethyladenosine transferase [Sulfuricurvum kujiense DSM 16994]
          Length = 259

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 123/266 (46%), Gaps = 24/266 (9%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           I KK  GQNFL D  +L +I +S        + EIG G G+LT+ L+ + +     ++ D
Sbjct: 8   IAKKKFGQNFLKDEAVLAQIIQSMPDTPH-RIAEIGPGLGDLTKYLVDVKSVTAFEVDTD 66

Query: 80  QQFFPILKDISSQHP-----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
                + K ++ Q       N L +   D L  +  K   +  P  ++ANLPY I T ++
Sbjct: 67  -----LCKHLTHQFADAIATNALTLRCGDVL--EHWKSELLDEPYDLVANLPYYIATNII 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
              ++     P   +L ++ Q+EV E+ +A      +G LSV+     +A ++  + P  
Sbjct: 120 LKALA----DPACRNLLVMIQREVAEKFSAAPGERAFGALSVIAQSVGEAEIVLHVPPTA 175

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253
           F P+PKV S V+      N      E  +   + AF + RKTL ++L       +L QA 
Sbjct: 176 FEPAPKVDSCVLLISKRTNRND---EGFEDFLRTAFTQPRKTLHKNLSSRYDGTVLSQAF 232

Query: 254 ---GIETNLRAENLSIEDFCRITNIL 276
               +E ++R   L   DF R+  ++
Sbjct: 233 ETLELERSIRPHQLDTSDFHRLYTLI 258


>gi|207092922|ref|ZP_03240709.1| dimethyladenosine transferase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 261

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 109/234 (46%), Gaps = 33/234 (14%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPI 85
           +FL D + L +I  +   L+ + +IEIG G G+LT  LL     K   I+ +  ++    
Sbjct: 1   HFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTYEIDSNLCEKMRSK 60

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           LK  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N +      P
Sbjct: 61  LK--AQKKPFELELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLNALKD----P 108

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
               L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F P PKV S+V
Sbjct: 109 KCRGLLVMTQKEVALKFCARDSQ---NALSVLAHAIGDATLLFDVPPSAFSPPPKVFSSV 165

Query: 206 IHFIPH---------LNPIPCCLESLKK-------ITQEAFGKRRKTLRQSLKR 243
              I           L   P   ESL+K         +  F   RKTL  +LK+
Sbjct: 166 FEVIKEPLKEKALASLAQAPFFEESLQKGFETLEDFLKACFSSPRKTLSNNLKK 219


>gi|15226591|ref|NP_182264.1| dimethyladenosine transferase, putative [Arabidopsis thaliana]
 gi|2529685|gb|AAC62868.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
 gi|14532650|gb|AAK64053.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
 gi|21280901|gb|AAM44912.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
 gi|330255745|gb|AEC10839.1| dimethyladenosine transferase [Arabidopsis thaliana]
          Length = 353

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 14/201 (6%)

Query: 15  SHYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +HY+  I   K  GQ+ L +  ++  I + +G      ++EIG G GNLT+ LL  G ++
Sbjct: 20  NHYQGGISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KE 78

Query: 73  VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           VI +E D +    L+      P  NRL++IQ D LK +  +F +I      +AN+PY I 
Sbjct: 79  VIAVELDSRMVLELQRRFQGTPFSNRLKVIQGDVLKTELPRF-DI-----CVANIPYQIS 132

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + L F  +     P  +    +++Q+E   R+ AQ     Y RLSV T    + + +  +
Sbjct: 133 SPLTFKLL---FHPTSFRCAVIMYQREFAMRLVAQPGDNLYCRLSVNTQLYARVSHLLKV 189

Query: 191 SPHVFFPSPKVTSTVIHFIPH 211
             + F P PKV S+V+   P 
Sbjct: 190 GKNNFRPPPKVDSSVVRIEPR 210


>gi|78779250|ref|YP_397362.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9312]
 gi|119365046|sp|Q31B19|RSMA_PROM9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78712749|gb|ABB49926.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9312]
          Length = 276

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 137/262 (52%), Gaps = 14/262 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL    +K+  IE D+ 
Sbjct: 9   KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTSKLLDSEIKKLHAIELDKD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS- 139
              +L D    + ++  + Q D L V+ +   +I+  I ++IAN+PYNI   +L  +I  
Sbjct: 69  LINLLND-KFNNNDKFSLQQGDILSVNLD---SINKKITKVIANIPYNITGPILDIFIGR 124

Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   +E +  L QK+V +RI +++ SP+ G LS+     +K   + D+ P  F P 
Sbjct: 125 LGIIRNYNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRIQLLSKIKRICDVPPSSFSPP 184

Query: 199 PKVTSTVIHFIPHLNP--IPCCLES-LKKITQEAFGKRRKTLRQSLKR-LGGE---NLLH 251
           PKV S+++ F P  N   +   LE  + K+ + +F  RRK LR +L   L  E    L  
Sbjct: 185 PKVFSSLVVFEPIKNDLRLDISLEKYIDKLLRISFNSRRKMLRNTLNSILSNEEINELSE 244

Query: 252 QAGIETNLRAENLSIEDFCRIT 273
            + +  NLR +++SI  + ++ 
Sbjct: 245 SSKVCFNLRPQDISIHQWIKLA 266


>gi|255948106|ref|XP_002564820.1| Pc22g08040 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591837|emb|CAP98092.1| Pc22g08040 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 386

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 123/265 (46%), Gaps = 18/265 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           + KT  +H        +GQ+ L +  I   I E +       V+EIG G GNLT  +L  
Sbjct: 21  AAKTKAAHSIFKMNTDIGQHVLKNPGIAAAIVEKAELKQSDVVLEIGPGTGNLTAKILE- 79

Query: 69  GARKVIVIEKDQQFFP-ILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            A+K I +E D +    + K   S+ +  RLE+I  D +K +   +F++      I+N P
Sbjct: 80  KAKKCIAVELDPRMAAEVTKRFQSTPYQKRLEVILGDVMKTELP-YFDV-----CISNTP 133

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I + L F  ++    P    S  L+FQ+E   R+ A+     Y RLSV      K   
Sbjct: 134 YQISSPLTFKLLATSPAP---RSCILMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDH 190

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           +  +  + F P P+V S+VI  +P  NP P    E    + +  F ++ KTLR S   +G
Sbjct: 191 IMKVGKNNFKPPPQVESSVIRMVPK-NPRPQVNYEEWDGLLRIVFVRKNKTLRSSF--IG 247

Query: 246 GENLLH--QAGIETNLRAENLSIED 268
             +++   +A   T     ++ +ED
Sbjct: 248 TSSIMELLEANYRTWCAQNDIPVED 272


>gi|149194711|ref|ZP_01871806.1| dimethyladenosine transferase [Caminibacter mediatlanticus TB-2]
 gi|149135134|gb|EDM23615.1| dimethyladenosine transferase [Caminibacter mediatlanticus TB-2]
          Length = 233

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 15/191 (7%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           VIEIG G G+LT+ LL    R+V+  E D++   ILK    + PN L +   D L+   E
Sbjct: 8   VIEIGPGLGDLTEKLLE--KRQVLAYEIDRELCEILK---KKFPN-LNLKCGDVLEYWQE 61

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              N  +   +IANLPY I T ++   +         +++ +L QKEV ++ +A+     
Sbjct: 62  SLAN--TKYDLIANLPYYIATNIILRALKDKNA----QNILVLIQKEVADKFSAKVGDKI 115

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF 230
           YG LS+L         +FDI P  F P+PKV S+VI F    +      E   K  + AF
Sbjct: 116 YGSLSILASQVANVKKLFDIPPGAFVPAPKVMSSVILFEKFKDSYN---EDFAKFLKIAF 172

Query: 231 GKRRKTLRQSL 241
              RKTL ++L
Sbjct: 173 ANPRKTLNKNL 183


>gi|300932590|ref|ZP_07147846.1| dimethyladenosine transferase [Corynebacterium resistens DSM 45100]
          Length = 256

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 34/246 (13%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKF 112
           G G+LT  LL      V  +E D +    L +  + +      +L +I+ DALKV    F
Sbjct: 6   GWGSLTLALLE-AVETVTAVEIDSRLAQKLPETVAHYAAGAGEKLGVIEMDALKVTRADF 64

Query: 113 FNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              S P+   ++ANLPYN+   +L + +      P  + + ++ Q EV +R+ AQ  S  
Sbjct: 65  EAASRPLPTALVANLPYNVSVPVLLHLLEEF---PTIDRVLVMVQLEVADRLAAQPGSKI 121

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-------------IPHLNPIPC 217
           YG  SV   +    +    I  +VF+P+PK+ S ++                P L+    
Sbjct: 122 YGVPSVKASYYGNVSRAATIGKNVFWPAPKIDSGLVRIDRYRAAERPWAEGAPELH--TS 179

Query: 218 CLESLKK----ITQEAFGKRRKTLRQSLK-RLGG----ENLLHQAGIETNLRAENLSIED 268
             +SL+K    +   AF +RRKTLR +L    GG    E  L  AGI+   R E LS+ D
Sbjct: 180 AEQSLRKETFALADAAFLQRRKTLRAALSGHFGGAPQAEAALLAAGIDPKQRGEKLSVVD 239

Query: 269 FCRITN 274
           F R+  
Sbjct: 240 FVRLAT 245


>gi|310793644|gb|EFQ29105.1| dimethyladenosine transferase [Glomerella graminicola M1.001]
          Length = 378

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 37/282 (13%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGI----------TVIEIGAGPGNLTQMLLTLGA 70
           P +     F  + N+ + I ++ G  D I          TV+EIG G GNLT  +L   +
Sbjct: 22  PSQKTNNVFKFNTNVGQHILKNPGVADAIVHKAELKPTDTVLEIGPGTGNLTVRILE-KS 80

Query: 71  RKVIVIEKDQQFFP-ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +K+I IE D +    + K +      R LE++  DA+KVD+  F        +I+N PY 
Sbjct: 81  KKLIAIEFDPRMAAEVTKRVQGTPEQRKLEVMLGDAIKVDWVPF------DVLISNTPYQ 134

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L+F  ++    P       L+FQ E G+R+ A+     YGRLSV   +    + + 
Sbjct: 135 ISSPLVFKMLAMPKPP---RQAILMFQLEFGQRLVAKPGDKLYGRLSVNANFWATCSNVM 191

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            +S   F P P+V S V+  +P           E    + +  F ++ +T+R S   LG 
Sbjct: 192 KVSKANFRPPPQVDSCVVRIVPKQGAERPTIAFEEFDGLLRICFNRKNRTMRASW--LGT 249

Query: 247 ENLLHQAGIETNLRA----ENLSIEDFCRITNILTDNQDIAI 284
           + +L    +E N R      N+ ++D      ++ D++D A+
Sbjct: 250 KEVLQM--LEKNYRTWAAMNNVPLDD-----TLVEDDEDEAM 284


>gi|122937785|gb|ABM68619.1| AAEL010575-PA [Aedes aegypti]
          Length = 266

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 13/218 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
            V+EIG G GN+T  LL    +KV+  E D +    L+      P  ++L+I+  D LK 
Sbjct: 12  VVLEIGPGTGNMTVKLLE-KVKKVVACEIDPRLVAELQKRVQGTPMQSKLQILIGDVLKA 70

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   FF+       +AN+PY I +  +F  +      PF+    L+FQ E  +R+ A+  
Sbjct: 71  DLP-FFDCC-----VANMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEFAQRLVAKPG 121

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227
              Y RLSV T    +  M+  +  + F P PKV S+V+   P     P        +T+
Sbjct: 122 DKLYCRLSVNTQLLARVDMLMKVGKNNFRPPPKVESSVVRIEPRNPSPPINYTEWDGLTR 181

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQA-GIETNLRAENL 264
            AF ++ KTL  + K+      L Q   ++ +L+ ++L
Sbjct: 182 IAFLRKNKTLAAAFKQTSVMTALEQNFKMQCSLKNQDL 219


>gi|194388854|dbj|BAG61444.1| unnamed protein product [Homo sapiens]
          Length = 243

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 12/220 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQISSPFVFKLLLHR- 145

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV 
Sbjct: 146 --PFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           S+V+   P   P P   +    + +  F ++ KTL  + K
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243


>gi|289548364|ref|YP_003473352.1| dimethyladenosine transferase [Thermocrinis albus DSM 14484]
 gi|289181981|gb|ADC89225.1| dimethyladenosine transferase [Thermocrinis albus DSM 14484]
          Length = 247

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 117/259 (45%), Gaps = 18/259 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+ L+   +LKKI E  G  +G  V+EIG G GNLT +LL     ++  IE D  
Sbjct: 4   KKQYGQHLLVSTGVLKKIVEELGVEEGDKVVEIGPGTGNLTLLLLQTPLAELHAIELDPD 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              IL+ +  +   RL++   DA +       ++   ++++ NLPYN+ + ++ N +   
Sbjct: 64  MLKILQRVEDK---RLQLHHADASRF---PLCSLGENLKVVGNLPYNVASLIVENTVLHH 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P       + QKEVGE++    +      LS           +  + P  F P PKV
Sbjct: 118 RCIPLA---LYMVQKEVGEKLQEGASW-----LSFFVRTFYDVFYIMSVPPQFFRPPPKV 169

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S ++  +         L   KK     F  RRK L+  L+     ++L + G++  LR 
Sbjct: 170 NSALVKLVRKDTLPQLDLFEYKKFLDILFSHRRKALKNKLE----SSILEKVGVDPMLRV 225

Query: 262 ENLSIEDFCRITNILTDNQ 280
           E L +    R+  +  D++
Sbjct: 226 EQLDLNTVLRLFAVWLDSK 244


>gi|309798999|ref|ZP_07693256.1| dimethyladenosine transferase [Streptococcus infantis SK1302]
 gi|308117403|gb|EFO54822.1| dimethyladenosine transferase [Streptococcus infantis SK1302]
          Length = 145

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 75/134 (55%), Gaps = 6/134 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + +IEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNIIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD  K    F N   PI+++ANLP
Sbjct: 70  -EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAKHIQNFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISA 140
           Y I T +L + I +
Sbjct: 128 YYITTPILMHLIES 141


>gi|242309135|ref|ZP_04808290.1| dimethyladenosine transferase [Helicobacter pullorum MIT 98-5489]
 gi|239524176|gb|EEQ64042.1| dimethyladenosine transferase [Helicobacter pullorum MIT 98-5489]
          Length = 242

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 124/252 (49%), Gaps = 20/252 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--IS 90
           L I++ I + +  L+   +IEIGAG G+LT  LL LG   +   E D++  P LK+    
Sbjct: 3   LQIVQSIPKEALDLE---LIEIGAGLGDLTNKLLGLG--NITAYEVDEELLPYLKERFKK 57

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +    +LE+   D +++ ++       P  +I+NLPY I T L+   I      P  +  
Sbjct: 58  ALESKQLELKIGDVMEI-WKGNSLRDKPYFLISNLPYYIATLLVIKAIKD----PLCKGC 112

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
            ++ QKEV  +  A +N   +  LSVLT    +A ++F++ P  F P PKVTS V  F+ 
Sbjct: 113 VVMTQKEVALKFCASENQSDFSALSVLTQSVGEAKLLFEVPPIAFVPQPKVTSAV--FLI 170

Query: 211 HLNPI-PC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENL 264
             N I P   LE+L+ + + +F   RKT+  +L +   +     +L    I  N R   +
Sbjct: 171 QKNQILPSDFLEALEGLLKISFNAPRKTIFNNLSKNYSKQKVLEVLEDLQITPNKRPHEI 230

Query: 265 SIEDFCRITNIL 276
               + R+  IL
Sbjct: 231 DTATYHRLLKIL 242


>gi|149174955|ref|ZP_01853579.1| dimethyladenosine transferase [Planctomyces maris DSM 8797]
 gi|148846292|gb|EDL60631.1| dimethyladenosine transferase [Planctomyces maris DSM 8797]
          Length = 306

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 135/280 (48%), Gaps = 34/280 (12%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+  +GQNFL+DLNI++ + E         V+E+G G G +T  +    A  VI +E D+
Sbjct: 23  PRSDLGQNFLIDLNIIEYVVEHGHIQPNDIVLEVGTGTGGMTTFMAQQAAH-VITVEYDR 81

Query: 81  QFFPILKDISSQHPNRLEIIQDDALK------------VDFEKFFNISSPIRIIANLPYN 128
               + ++ + ++ N + ++  DALK            +  +   +  S ++++ANLPYN
Sbjct: 82  NMHTLAQEATQKYDN-ITLLNCDALKNKNHMSPIVLDEIAAQLEAHPGSQLKLVANLPYN 140

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + T ++ N +++D     W  + +  Q E+G ++  +  S +YG LSV    +    ++ 
Sbjct: 141 VATPIISNIVASDLP---WNRMVVTIQYELGLKMACKPTSSNYGALSVWLQSQCFVKLLK 197

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI-----TQEAFGKRRKTLRQSLKR 243
            + P VF+P P V S ++   P  NP P   + + ++      +  F  RRK +R +L  
Sbjct: 198 KLGPTVFWPRPGVDSAIVQLTP--NP-PLKQKIVDRVFFQDFLRRVFQHRRKLMRSTLVG 254

Query: 244 LGGENL--------LHQAGIETN-LRAENLSIEDFCRITN 274
           +  + L        L   GI+    RAE L++ +   + N
Sbjct: 255 MYSKQLPKADVDAILLSHGIDKEKTRAEELNVPELIELAN 294


>gi|302519786|ref|ZP_07272128.1| dimethyladenosine transferase [Streptomyces sp. SPB78]
 gi|302428681|gb|EFL00497.1| dimethyladenosine transferase [Streptomyces sp. SPB78]
          Length = 284

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K  GQNF++D N +++I  ++   +  TV+E+G G G+LT  LL + 
Sbjct: 13  IRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPGLGSLTLALLEVA 72

Query: 70  ARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A  V  +E D      L    +    +      ++  DAL+V   +     +P  ++ANL
Sbjct: 73  A-DVTAVEIDDTLAAALPATVAARLPEKAAHFRLVHSDALRV---RELPGPAPTALVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + +  + +P    +L ++ Q EV +R+ A   S  YG  SV   W     
Sbjct: 129 PYNVAVPVLLHML--EHFPSVERTL-VMVQAEVADRLAAPPGSRVYGVPSVKAAWYAHVK 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFI 209
               I   VF+P+P V S ++  +
Sbjct: 186 RAGSIGRSVFWPAPNVDSGLVSLV 209


>gi|323445795|gb|EGB02231.1| hypothetical protein AURANDRAFT_35437 [Aureococcus anophagefferens]
          Length = 192

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 18/186 (9%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           S + +   K +GQNFL +  I+  I E +      +V+EIG G GNLT  LL   A+K+ 
Sbjct: 19  SSHLLAANKDLGQNFLKNPAIVDAIVERAKLQPTDSVLEIGPGTGNLTVKLLA-QAKKLT 77

Query: 75  VIEKDQQFFPILKDISSQHPN-----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            +E D++   ++++++ +  N     RLE++  D LKV    +F++      +ANLPYNI
Sbjct: 78  CVEFDRR---MVREVAKRVENDPRKHRLEMVHGDVLKVALP-YFDVC-----VANLPYNI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            +  LF  ++     P + S  ++FQ+E  +R++A+     Y RLSV T    K T +  
Sbjct: 129 SSPFLFKLLA---HRPHFRSAVIMFQEEFAQRLSAKPGDALYCRLSVNTQLLAKVTQLIK 185

Query: 190 ISPHVF 195
           +  + F
Sbjct: 186 VGRNNF 191


>gi|321479018|gb|EFX89974.1| hypothetical protein DAPPUDRAFT_205158 [Daphnia pulex]
          Length = 308

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I++ + E +      TV+EIG G GN+T  LL   +++V+  E D +   
Sbjct: 29  LGQHILKNPKIVESMVEKAALRSTDTVLEIGPGTGNMTVKLLE-RSKRVVACEVDPRMVA 87

Query: 85  ILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+   + +    +L I+  D LK +   FF++      +ANLPY I +  +F  +    
Sbjct: 88  ELQKRVLGTHLQPKLHIMVGDVLKTELP-FFDVC-----VANLPYQISSPFVFKLL---L 138

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             P +    L+FQ+E  ER+ A+     Y RLSV T    K   +  +  + F P PKV 
Sbjct: 139 HRPMFRCALLMFQREFAERLIAKPGDKLYCRLSVNTQLLAKVDHVLKVGKNNFRPPPKVE 198

Query: 203 STVIHFIPHLNPIP 216
           S+V+   P  NP P
Sbjct: 199 SSVVRIEPK-NPAP 211


>gi|255513974|gb|EET90238.1| ribosomal RNA adenine methylase transferase [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 277

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 17/193 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           I PK+ +GQNFL       KIAE  +G  DG   +E+GAG G LT+ L  + A  V+ +E
Sbjct: 19  IRPKRKLGQNFLKS----PKIAEFEAGYADGKNALELGAGLGVLTRKLCEV-ANSVVAVE 73

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           KD+  F  LK   + H   L++I  D   +D E F        +++N+PYNI +++L  W
Sbjct: 74  KDKALFDRLKMNLAFH--NLKLINADFFDLDPEVFKKCDI---MVSNIPYNISSKVLM-W 127

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +S            L  Q+E  + I A+  S  Y +LSV +    +   +  +S   F+P
Sbjct: 128 LSEHKM-----QAVLCLQREFVDHIIARPGSRKYSKLSVFSQLNFRIYPIKRVSRLSFYP 182

Query: 198 SPKVTSTVIHFIP 210
           +PKV S++I   P
Sbjct: 183 APKVDSSIILLDP 195


>gi|218189952|gb|EEC72379.1| hypothetical protein OsI_05650 [Oryza sativa Indica Group]
          Length = 603

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 40/246 (16%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++++ S  + +P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL  
Sbjct: 60  TIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLDA 119

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF---------EKFFNISSPI 119
           GA  V  +EKD+    ++ D       +L+II++D  K +          EK  +     
Sbjct: 120 GA-TVFAVEKDKHMATLVNDRFGS-TEQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKYA 177

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLT 178
           ++++NLP+N+ T ++   +        +  + LL Q E   R   A   +P Y  ++V  
Sbjct: 178 KVVSNLPFNVSTEVVKLLLPMGD---VFSVMVLLLQDETALRFADASIQTPEYRPINVFV 234

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            + ++    F +    FFP PKV S                         AF  +RK LR
Sbjct: 235 NFYSEPEYKFKVERTNFFPQPKVNS-------------------------AFNGKRKMLR 269

Query: 239 QSLKRL 244
           +SL+ L
Sbjct: 270 KSLQHL 275


>gi|297526046|ref|YP_003668070.1| ribosomal RNA adenine methylase transferase [Staphylothermus
           hellenicus DSM 12710]
 gi|297254962|gb|ADI31171.1| ribosomal RNA adenine methylase transferase [Staphylothermus
           hellenicus DSM 12710]
          Length = 268

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 138/270 (51%), Gaps = 31/270 (11%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  + + P+K + QNF+++  I+    +    L   T++EIGAG G+L+  L    ++ 
Sbjct: 19  ILRKHGVRPRKKLSQNFIVNPRIIHDFLKHV--LPNKTLLEIGAGIGSLSYYLSRKVSKY 76

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            + IE D++   I +D+ S    R  +I  +AL +D+       S  ++ +N PY+I + 
Sbjct: 77  SVFIEIDERLSRICRDLISP---RGILINGNALDLDW-------SVEQVFSNAPYHITSD 126

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS- 191
           ++     +++     E    +FQK+V +R+ A+  +  YGR++VLT       ++FDI  
Sbjct: 127 IIVKTARSNSV----EYAVFVFQKDVVDRLLARPGTKEYGRITVLT------RLVFDIER 176

Query: 192 -----PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
                P  F+P P+V+S +I  +         +  ++++T+  F KRRK   +++ R  G
Sbjct: 177 GPTYPPVFFYPRPEVSSQMI-ILKRKRRYDEVISRVEEVTRLLFSKRRKKALKTIMRELG 235

Query: 247 ENL--LHQAGIETNLRAENLSIEDFCRITN 274
            ++  + + G++   R  +LS E F ++  
Sbjct: 236 LSIDDVRRLGVDEKARVYDLSPEVFLKLAE 265


>gi|239610737|gb|EEQ87724.1| dimethyladenosine transferase [Ajellomyces dermatitidis ER-3]
          Length = 330

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 22/226 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKV 107
           TV+EIG G GNLT  +L   A+KVI +E D +    +       P   RLE++  D +K 
Sbjct: 10  TVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAAEVTKRVQGKPEQKRLEVLLGDVIKT 68

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   +F++      I+N PY I + L F  ++ D  P       L+FQ+E   R+ A+  
Sbjct: 69  DLP-YFDVC-----ISNTPYQISSPLTFKLLAIDPAP---RVCILMFQREFAMRLFAKPG 119

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKIT 226
              Y RLSV      +   +  +  + F P P V S+V+  +P  NP P    +    + 
Sbjct: 120 DKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVESSVVRIVPK-NPRPQISYDEWDGLL 178

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA----ENLSIED 268
           + AF ++ KT+R S   LG  ++L    +E+N R      N+ +ED
Sbjct: 179 RVAFVRKNKTMRSSF--LGTTSVLDM--LESNYRTWCAQNNIPVED 220


>gi|147864926|emb|CAN81538.1| hypothetical protein VITISV_011853 [Vitis vinifera]
          Length = 336

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 28/226 (12%)

Query: 16  HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           HY+  +   K  GQ+ L +  ++  I E SG      ++EIG G GNLT+ LL  G + V
Sbjct: 20  HYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KSV 78

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I +E D +    L+      P  NRL++IQ D L+ D   +F+I      +AN+PY I +
Sbjct: 79  IAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLP-YFDI-----CVANIPYQISS 132

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L F  ++     P +    ++FQ+E   R+ AQ     Y RLSV               
Sbjct: 133 PLTFKLLA---HRPVFRCAVIMFQREFAMRLVAQPGDNLYCRLSV--------------G 175

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
            + F P PKV S+V+   P     P   +    + +  F ++ KTL
Sbjct: 176 KNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTL 221


>gi|126465678|ref|YP_001040787.1| dimethyladenosine transferase [Staphylothermus marinus F1]
 gi|126014501|gb|ABN69879.1| dimethyladenosine transferase [Staphylothermus marinus F1]
          Length = 268

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 138/270 (51%), Gaps = 31/270 (11%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  + I P+K + QNF+++  I+    +    L   T++EIGAG G+L+  L    ++ 
Sbjct: 19  LLRKHGIRPRKKLSQNFIVNPRIIHDFLKHV--LPNKTLLEIGAGIGSLSYYLSRKASKY 76

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            + IE D++   I +D+ S    R  +I  +AL +D+       S  ++I+N PY+I + 
Sbjct: 77  SVFIEIDERLSRICRDLISP---RGILINGNALDLDW-------SVEQVISNAPYHITSD 126

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS- 191
           ++     +++          +FQK+V +R+ A+  +  YGR++VLT       ++FDI  
Sbjct: 127 IIVKTARSNS----VGYAVFVFQKDVVDRLLARPGTKEYGRITVLT------RLVFDIEK 176

Query: 192 -----PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR-KTLRQSLKRLG 245
                P  F+P P+V+S +I  +         +  ++++T+  F KRR K L+  +  LG
Sbjct: 177 GPVYPPIFFYPRPEVSSQMI-ILKRKRRYDEVISRVEEVTRLLFSKRRKKALKTIMSELG 235

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITN 274
              +++ + GI+   R  +LS E F ++  
Sbjct: 236 LNIDVIRRLGIDDKARVYDLSPEVFLKLAE 265


>gi|124023319|ref|YP_001017626.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9303]
 gi|166221689|sp|A2CA51|RSMA_PROM3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|123963605|gb|ABM78361.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 280

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 115/254 (45%), Gaps = 13/254 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K   Q++L+D  +L +I +++       ++E+G G G LT+ LL   A  V  +E D+ 
Sbjct: 9   RKRFAQHWLIDAAVLTQILDAADVQPDDRLLEVGPGRGALTERLLASSASAVHAVELDRD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   +    R  + + D L V      +  +  +++AN+PYNI   LL   +   
Sbjct: 69  LVSGLRQRFADQ-ARFSLQEGDVLSVPL-TLADGRAANKVVANIPYNITGPLLERLLGRL 126

Query: 142 TWP---PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             P   P+ + L LL QKEV +RI A      +  LSV        T +  + P  F P 
Sbjct: 127 DRPVDHPY-QRLVLLLQKEVAQRIRALPGQSCFSALSVRLQLLAHCTTVCPVPPRSFKPP 185

Query: 199 PKVTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE--NLLH 251
           PKV S VI      P     P   + ++ + ++AF  RRK LR +L ++    E   L  
Sbjct: 186 PKVHSEVILIEPLAPEQRLEPLLAKRVESLLRQAFLARRKMLRNTLAKVLPAAELNALAD 245

Query: 252 QAGIETNLRAENLS 265
             GI    R + LS
Sbjct: 246 DLGISLQQRPQELS 259


>gi|315453543|ref|YP_004073813.1| putative dimethyladenosine transferase [Helicobacter felis ATCC
           49179]
 gi|315132595|emb|CBY83223.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Helicobacter felis ATCC 49179]
          Length = 292

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 125/278 (44%), Gaps = 40/278 (14%)

Query: 25  MGQNFLLDLNILKKIAES---SGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQ 80
           +GQ+FL D   L +I +S       + + ++EIG G G+LT  LL  LG++ +I  E D+
Sbjct: 4   LGQHFLHDAFYLDQILQSIPYEHFNNEVQLVEIGVGLGDLTTRLLDRLGSKTLIAYEVDR 63

Query: 81  QFFPILKD-ISSQHPNRLEIIQDDA------------------LKVDFEKFFNISSPIRI 121
                LK  +S     RLE++  D                   L+V    F     P  +
Sbjct: 64  ALAIGLKSRLSPASWARLELVVGDVMERKGVGNGTYDVLANTRLRVPRVGFL-CDRPYFL 122

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           ++NLPY I T ++   +           + ++ Q EVG +  A   S  YG LSVL G  
Sbjct: 123 VSNLPYYIATPIIARALRDS----LCVGMVVMTQLEVGLKFCAHVGSKDYGALSVLAGLT 178

Query: 182 -TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT-----QEAFGKRRK 235
            T+  + F++    F P PKV S+VI  I H  P+  C  SL+ I      ++ F   RK
Sbjct: 179 CTRRELCFEVPKEAFNPPPKVRSSVIALIKH--PLQDCAPSLEVIELETALKQCFQANRK 236

Query: 236 TLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDF 269
           TL  +LK +      +  L + G++   R   LS  D+
Sbjct: 237 TLSNNLKGICSPEVLQTFLSRHGLKPQARPHELSPTDY 274


>gi|283780372|ref|YP_003371127.1| dimethyladenosine transferase [Pirellula staleyi DSM 6068]
 gi|283438825|gb|ADB17267.1| dimethyladenosine transferase [Pirellula staleyi DSM 6068]
          Length = 308

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 149/303 (49%), Gaps = 32/303 (10%)

Query: 3   MNNKSHSLKTILSHYK---IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +   ++  + S ++   I P+   GQNFL+DLN+L  +A+++   +   V+E+G G G
Sbjct: 1   MTSARQTVSYLTSRFREAGIRPEIRHGQNFLVDLNLLDLLADAAQITEDDVVLEVGTGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK---------VDFE 110
           +LT  L    A +V+ IE D++   + ++      N + ++  DAL+         +D  
Sbjct: 61  SLTSRLAERAA-EVVTIEIDERLAAMAEEELEDFDN-VTLVLRDALESKHKLSTEVMDIV 118

Query: 111 KFFNISSPIR---IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           +     +P R   + ANLPYN+ T ++ N +++D  P    S+T+  QKE+ +RI A   
Sbjct: 119 RAKLAEAPGRRFKLAANLPYNVATLIISNLLASDPCPV---SMTVTIQKELADRIVAPHG 175

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKK 224
           +  Y  LS+    + +A ++  I P VF+P PKV S ++H + H   +   L        
Sbjct: 176 TKDYSGLSIWVQSQCEAKIVRIIPPQVFWPPPKVHSAILH-LEHSQALASQLRDPAYFHS 234

Query: 225 ITQEAFGKRRKTLRQSLKRL-GGE---NLLHQAGIETNL----RAENLSIEDFCRITNIL 276
             +  F  RRK LR  L +L  G+   N + Q  +E  L    RAE L +     +++ L
Sbjct: 235 FIRAIFLHRRKFLRGVLAKLFDGQLTKNDIDQLFVEKQLTPETRAEELPVATLVELSHWL 294

Query: 277 TDN 279
            D 
Sbjct: 295 LDR 297


>gi|255023855|ref|ZP_05295841.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-208]
          Length = 143

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 7/131 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A +
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAK-TANE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPY 127
           V+  E DQ+  PIL D  S + N ++++  D LK D      E+F     P++I+ANLPY
Sbjct: 73  VVAFEIDQRLLPILDDTLSAY-NNVQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLPY 131

Query: 128 NIGTRLLFNWI 138
            + T ++   +
Sbjct: 132 YVTTPIILKLL 142


>gi|149003647|ref|ZP_01828512.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69]
 gi|147758379|gb|EDK65379.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69]
          Length = 146

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 6/134 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A
Sbjct: 10  KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA 69

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N + ++ +D LKVD     + F N + PI+++ANLP
Sbjct: 70  -QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLP 127

Query: 127 YNIGTRLLFNWISA 140
           Y I T +L + I +
Sbjct: 128 YYITTPILMHLIES 141


>gi|126459717|ref|YP_001055995.1| dimethyladenosine transferase [Pyrobaculum calidifontis JCM 11548]
 gi|126249438|gb|ABO08529.1| dimethyladenosine transferase [Pyrobaculum calidifontis JCM 11548]
          Length = 230

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 34/242 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           ++   Q+FL      +++AE    L   G+ V+E+G G G LT + L   +R V  IE D
Sbjct: 4   RRRFSQHFLKS----REVAEFIVGLVPPGLDVLEVGPGRGALT-IPLAEKSRVVYAIEID 58

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGTRLLFNW 137
           +    + +++    P  + +I  DAL+V++   ++F        ++N+PY I + LL   
Sbjct: 59  RG---LAEELRRAAPPNVVVIVGDALEVEWPPAQYF--------VSNVPYEITSPLLLK- 106

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++    P       +  QKEV +R+ A+  +  YGRL+V         ++  + PH F P
Sbjct: 107 LARHRLP-----AVVTVQKEVADRLAAEPGTEEYGRLTVAVRCHYDVEVVRVLPPHAFSP 161

Query: 198 SPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            PKV S V+     L P P C+   E  ++ T   F  RRKTLR+ LK    E  + Q  
Sbjct: 162 PPKVYSAVV----RLTPRPPCIEDFEGFQRFTAALFSARRKTLRR-LKLADSEKRIFQLS 216

Query: 255 IE 256
           +E
Sbjct: 217 LE 218


>gi|327400294|ref|YP_004341133.1| Ribosomal RNA small subunit methyltransferase A [Archaeoglobus
           veneficus SNP6]
 gi|327315802|gb|AEA46418.1| Ribosomal RNA small subunit methyltransferase A [Archaeoglobus
           veneficus SNP6]
          Length = 250

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 16/217 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ ++   I ++IA  +      TV+E+G G G LT +LL   A KV  IE D +F
Sbjct: 5   KSKGQH-IVSKAIARRIAGYAELSKKDTVLEVGCGTGVLTSVLLE-RAGKVYGIEIDARF 62

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +L++  ++     R  +I  DA+KV+F  F       + ++N+PY I + L F  +  
Sbjct: 63  VKLLQEKFAKEIDEGRFILIHGDAMKVEFPPFN------KFVSNIPYFISSPLTFKLLRH 116

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D     ++   +++Q+E  ER+ A+K   +YGRLSV+     K  ++  +S   F P P 
Sbjct: 117 D-----FDVAVVMYQREFAERLVARKGE-NYGRLSVVVKAYAKPEIVEYVSRKAFRPPPS 170

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           V S V+  I         L+  + + +  F +RRK L
Sbjct: 171 VDSAVVRLIKKPEIEVENLQIFEDLVRYCFSRRRKQL 207


>gi|30698221|ref|NP_201437.2| ribosomal RNA adenine dimethylase family protein [Arabidopsis
           thaliana]
 gi|21539437|gb|AAM53271.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana]
 gi|31711838|gb|AAP68275.1| At5g66360 [Arabidopsis thaliana]
 gi|332010820|gb|AED98203.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
           thaliana]
          Length = 352

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL  I  SS      TV+EIG G GNLT  LL   A+ V+ +E D++ 
Sbjct: 65  KSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLE-AAQNVVAVELDKRM 123

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL+   S H   ++L IIQ D LK DF  F        ++AN+PYNI + L+   +  
Sbjct: 124 VEILRKRVSDHGFADKLTIIQKDVLKTDFPHF------DLVVANIPYNISSPLVAKLVYG 177

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
                 + S TLL QKE   R+ A      + RL+V
Sbjct: 178 SNT---FRSATLLLQKEFSRRLLANPGDSDFNRLAV 210


>gi|328855713|gb|EGG04838.1| hypothetical protein MELLADRAFT_49047 [Melampsora larici-populina
           98AG31]
          Length = 333

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 15/221 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L    +KV+V+E D +   
Sbjct: 51  LGQHILKNPLVAQSIVDKANLKTTDQVLEVGPGTGNLTVKILE-KCKKVLVVEMDPRMAS 109

Query: 85  ILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
            L       P    +L+I+  D LK D   +F++      I+N PY I + L+F  ++  
Sbjct: 110 ELSKRFQGKPQEMKKLDILVGDFLKTDLP-YFDV-----CISNTPYQISSPLVFKLLAHR 163

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P +    L+FQ+E   R+ A+  S  + RLSV     +K   +  +    F P P V
Sbjct: 164 ---PIFRVAVLMFQREFALRLCARPGSSLWCRLSVNVQLYSKVNHLMKVGKANFRPPPLV 220

Query: 202 TSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241
            S+VI   P +NP P    E    +T+  F +R KT+R S 
Sbjct: 221 ESSVIKLEP-INPPPAIKFEEFDGLTRICFNRRNKTIRASF 260


>gi|78778284|ref|YP_394599.1| dimethyladenosine transferase [Sulfurimonas denitrificans DSM 1251]
 gi|119365861|sp|Q30NR7|RSMA_SULDN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78498824|gb|ABB45364.1| dimethyladenosine transferase [Sulfurimonas denitrificans DSM 1251]
          Length = 267

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 18/258 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI+ KK  GQNFL D ++L+KI E+  + D   ++EIG G G+LT+ L+ +  + V   E
Sbjct: 3   KIVAKKKFGQNFLKDESVLQKIIEAMPNNDN-KIVEIGPGLGDLTKFLVDV--KSVDAFE 59

Query: 78  KDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D     +L++   +     +L I   D L     +   I     ++ANLPY I T ++ 
Sbjct: 60  VDTDLCKVLQNKFEREIATKQLRIHCGDVLTAWKSEL--IEESYDLVANLPYYIATNIIL 117

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             ++     P  +++ ++ Q EV E+  A      +G LS++T    +A ++ ++ P  F
Sbjct: 118 KALA----DPKCKNILVMVQLEVAEKFCANDGDKVFGSLSIITQSVGEAHIVVNVPPSAF 173

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA-- 253
            P PK+ S V       +      E + ++   AF + RKTL ++L     + +L +   
Sbjct: 174 EPQPKINSAVFLIQKKSDRSDKDFEDMLRV---AFTQPRKTLMKNLSSTYDKAMLQEIFE 230

Query: 254 --GIETNLRAENLSIEDF 269
              +   +R   +S  D+
Sbjct: 231 KLSLAQTIRPHQVSTNDY 248


>gi|268529208|ref|XP_002629730.1| Hypothetical protein CBG00961 [Caenorhabditis briggsae]
 gi|187038646|emb|CAP22289.1| hypothetical protein CBG_00961 [Caenorhabditis briggsae AF16]
          Length = 308

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 99/214 (46%), Gaps = 12/214 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I E S      TV+E+G G GNLT  +L + A+ VI  E D +    
Sbjct: 29  GQHILKNPGVVNAIVEKSALKSTDTVLEVGPGTGNLTVKMLEV-AKTVIACEIDPRMIAE 87

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           +K      P   +L++   D +K ++  FF++      +ANLPY I +  +   +     
Sbjct: 88  VKKRVMGTPLQTKLQVNGGDVMKQEWP-FFDVC-----VANLPYQISSPFVQKLLLHRPL 141

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P +     L+FQKE  +R+ A+     Y RLSV      K  M+  +    F P PKV S
Sbjct: 142 PRYA---VLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDS 198

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
            V+   P   P P      + + +  F ++ KTL
Sbjct: 199 AVVRIAPKNPPPPVNFVEWEGLLRLCFMRKNKTL 232


>gi|307722062|ref|YP_003893202.1| dimethyladenosine transferase [Sulfurimonas autotrophica DSM 16294]
 gi|306980155|gb|ADN10190.1| dimethyladenosine transferase [Sulfurimonas autotrophica DSM 16294]
          Length = 271

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 14/230 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++   ++ KK  GQNFL D ++L++I E+    D   ++EIG G G+LT+ L+ +  + V
Sbjct: 1   MNRESVVAKKKFGQNFLKDQSVLRQIVEAMPKNDN-KIVEIGPGLGDLTKFLVDV--KSV 57

Query: 74  IVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
              E D     +L+    +     RL I   D L+    +   +S P  ++ANLPY I T
Sbjct: 58  EAFEVDTDLCKLLQSTFKEEIATKRLHINCGDVLEAWQSEL--VSEPYDLVANLPYYIAT 115

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   ++     P  +++ ++ Q EV E+  A      +G L V+      A ++  + 
Sbjct: 116 NIILKALA----DPMCKNILVMVQLEVAEKFCASSGEKVFGSLGVIAQSVGTAQIVVKVP 171

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           P  F P PKV S V       +      E + ++   AF + RKTL ++L
Sbjct: 172 PTAFDPQPKVDSAVFLIQKKRDRNDKEFEDMLRV---AFSQPRKTLVKNL 218


>gi|302421778|ref|XP_003008719.1| dimethyladenosine transferase [Verticillium albo-atrum VaMs.102]
 gi|261351865|gb|EEY14293.1| dimethyladenosine transferase [Verticillium albo-atrum VaMs.102]
          Length = 346

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 12/188 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  +   I   +G     TV+EIG G GNLT  +L   A+K+I IE D +   
Sbjct: 35  VGQHILKNPGVADAIVAKAGLKPTDTVLEIGPGTGNLTVRILE-NAKKLIAIEFDPRMAA 93

Query: 85  -ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            + K +      R LE++  DA+KVD+  F        +I+N PY I + L+F  ++   
Sbjct: 94  EVTKRVQGTPEQRKLEVMLGDAIKVDWVPF------DVLISNTPYQISSPLVFKMLAMPK 147

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ E G+R+ A+     YGRLSV   +    + +  +S   F P P+V 
Sbjct: 148 PP---RQAILMFQLEFGQRLVAKPGDKLYGRLSVNANFWATCSNVMKVSKANFRPPPQVD 204

Query: 203 STVIHFIP 210
           S V+  +P
Sbjct: 205 SCVVRIVP 212


>gi|315050182|ref|XP_003174465.1| dimethyladenosine transferase dimethyltransferase [Arthroderma
           gypseum CBS 118893]
 gi|311339780|gb|EFQ98982.1| dimethyladenosine transferase dimethyltransferase [Arthroderma
           gypseum CBS 118893]
          Length = 377

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 12/219 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A+KVI +E D +   
Sbjct: 39  IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   RLE++  D +K +   +F++      I+N PY I + L F  ++   
Sbjct: 98  ELTKRVQGKPEQKRLEVLLGDVMKTEVP-YFDV-----CISNTPYQISSPLTFKLLATTP 151

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 152 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 208

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           S+V+  +P +       E    + + AF ++ KTLR S 
Sbjct: 209 SSVVRIVPKVPRPDISYEEWDGLLRIAFVRKNKTLRSSF 247


>gi|296813149|ref|XP_002846912.1| dimethyladenosine transferase dimethyltransferase [Arthroderma otae
           CBS 113480]
 gi|238842168|gb|EEQ31830.1| dimethyladenosine transferase dimethyltransferase [Arthroderma otae
           CBS 113480]
          Length = 376

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 12/219 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A+KVI +E D +   
Sbjct: 39  IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   RLE++  D +K +   +F++      I+N PY I + L F  ++   
Sbjct: 98  ELTKRVQGKPEQKRLEVLLGDVMKTEVP-YFDVC-----ISNTPYQISSPLTFKLLATTP 151

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 152 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 208

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           S+V+  +P +       E    + + AF ++ KTLR S 
Sbjct: 209 SSVVRIVPKVPRPDISYEEWDGLLRIAFVRKNKTLRSSF 247


>gi|47219520|emb|CAG09874.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 286

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 39/161 (24%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y +  +K + QNFLLDL +  KI   +G L G  V E+G GPG LT+ +L  GA  ++V+
Sbjct: 25  YNLRAEKQLSQNFLLDLKLTDKIVRQAGCLKGAHVCEVGPGPGGLTRSILNAGAADLLVV 84

Query: 77  EKDQQF------------------------------FPILKDISSQHPNRLEIIQDDALK 106
           EKD +F                               P+L+ +S   P RL I+  D L 
Sbjct: 85  EKDSRFIPGLKVKLAAGTASSRLFVQPSRCDGVAFNIPVLQLLSEAAPGRLRIVHGDILT 144

Query: 107 VDFEK-FFNISSP--------IRIIANLPYNIGTRLLFNWI 138
              ++ F  ++S         + +I NLP+N+ T L+  W+
Sbjct: 145 YRMDRGFLGMTSKTWQEDPPNLHVIGNLPFNVSTPLIIKWL 185


>gi|221485301|gb|EEE23582.1| dimethyladenosine transferase, putative [Toxoplasma gondii GT1]
          Length = 494

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 13/224 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+ L +  +L KI +++      TV+EIG G GNLT  LL + AR+V+ ++ D +
Sbjct: 171 QKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALDVDAR 229

Query: 82  FFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               +K   IS+   N L +   DAL+ D    F++ +     ANLPY I +  L   ++
Sbjct: 230 MVNEVKKRAISNGFMN-LAVRHGDALRSDL-GVFDVCA-----ANLPYQISSHFLLRLLA 282

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               PPF     L+FQKE GER+ AQ    +Y RL+           +  +    F P P
Sbjct: 283 HR--PPF-RCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVDAKHFTPPP 339

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           KV S V+  +P  N I    +    + +  FG++ +TL    +R
Sbjct: 340 KVDSVVVKVVPRPNLIDVDFKEWDGLMRICFGRKNRTLHALFRR 383


>gi|123966249|ref|YP_001011330.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9515]
 gi|166221690|sp|A2BWR2|RSMA_PROM5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|123200615|gb|ABM72223.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 276

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 135/263 (51%), Gaps = 16/263 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL     ++  +E D+ 
Sbjct: 9   KKRFGQHWLVNNLILEKIKEVAELDEKDFILEIGPGKGALTSKLLDSKISRLHAVELDKD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS- 139
              +L +   ++  +  + Q D L  + +   +I+  I ++IAN+PYNI   +L  +I  
Sbjct: 69  LIDLLNN-KFRNDKKFSLQQGDILSTNLD---SINKKITKVIANIPYNITGPILDIFIGR 124

Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   ++ +  L QK+V +RI ++++S + G +SV     +    + D+ P  F P 
Sbjct: 125 LGIVSKNNYKKIIFLMQKDVVDRILSKESSKNAGAMSVRMQLISNIKRICDVPPSSFNPP 184

Query: 199 PKVTSTVIHFIPHLNP---IPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGEN----LL 250
           PKV S+++ F P L P   +   LE  + K+ Q +F  RRK +R +L  +  E+    L 
Sbjct: 185 PKVFSSLVVFEP-LRPEKRLDIKLERYIDKLLQISFNSRRKMIRNTLNSILSEDEIKKLA 243

Query: 251 HQAGIETNLRAENLSIEDFCRIT 273
             + I  N R +++SI  + ++ 
Sbjct: 244 ELSEICFNSRPQDISINKWIKLA 266


>gi|327303040|ref|XP_003236212.1| dimethyladenosine transferase dimethyltransferase [Trichophyton
           rubrum CBS 118892]
 gi|326461554|gb|EGD87007.1| dimethyladenosine transferase dimethyltransferase [Trichophyton
           rubrum CBS 118892]
          Length = 377

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 12/219 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A+KVI +E D +   
Sbjct: 39  IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   RLE++  D +K +   +F++      I+N PY I + L F  ++ + 
Sbjct: 98  ELTKRVQGKPEQKRLEVLLGDVMKTEVP-YFDVC-----ISNTPYQISSPLTFKLLATNP 151

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 152 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 208

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           S+V+  +P +       +    + + AF ++ KTLR S 
Sbjct: 209 SSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247


>gi|237835739|ref|XP_002367167.1| dimethyladenosine transferase, putative [Toxoplasma gondii ME49]
 gi|211964831|gb|EEB00027.1| dimethyladenosine transferase, putative [Toxoplasma gondii ME49]
 gi|221506158|gb|EEE31793.1| dimethyladenosine transferase, putative [Toxoplasma gondii VEG]
          Length = 494

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 13/224 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+ L +  +L KI +++      TV+EIG G GNLT  LL + AR+V+ ++ D +
Sbjct: 171 QKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALDVDAR 229

Query: 82  FFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               +K   IS+   N L +   DAL+ D    F++ +     ANLPY I +  L   ++
Sbjct: 230 MVNEVKKRAISNGFMN-LAVRHGDALRSDL-GVFDVCA-----ANLPYQISSHFLLRLLA 282

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               PPF     L+FQKE GER+ AQ    +Y RL+           +  +    F P P
Sbjct: 283 HR--PPF-RCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVDAKHFTPPP 339

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           KV S V+  +P  N I    +    + +  FG++ +TL    +R
Sbjct: 340 KVDSVVVKVVPRPNLIDVDFKEWDGLMRICFGRKNRTLHALFRR 383


>gi|319777610|ref|YP_004137261.1| dimethyladenosine transferase [Mycoplasma fermentans M64]
 gi|238810000|dbj|BAH69790.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038685|gb|ADV34884.1| Dimethyladenosine transferase [Mycoplasma fermentans M64]
          Length = 258

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 12/224 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK  GQNFL D N++ KI E      G  ++EIG G G LT+ +L   A++    E
Sbjct: 6   KLKAKKRYGQNFLKDQNVINKIIELIKP-QGEKILEIGPGRGALTK-ILNQQAKEFTAFE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            DQ     L+   +   N+ +I+Q D L  D +K+        ++ N+PY I + ++F  
Sbjct: 64  IDQDMVDYLQ--KNNILNQNQIVQGDFLIADLKKY----KSYVVVGNIPYYITSDIIFKL 117

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +   ++   L+ Q EV +R+ A+ N   Y +LS+   +         +    F P
Sbjct: 118 LD---YRHNFKKAILMVQNEVAQRLVAKPNQNDYSKLSITVQYCADVKKELFVKKTYFDP 174

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            PKV S ++  I   N      E+LK   +  F  RRK L  +L
Sbjct: 175 VPKVDSAIVS-ITFKNEANDNYENLKDFFKLCFLARRKKLSFAL 217


>gi|317505059|ref|ZP_07963006.1| dimethyladenosine transferase [Prevotella salivae DSM 15606]
 gi|315663837|gb|EFV03557.1| dimethyladenosine transferase [Prevotella salivae DSM 15606]
          Length = 209

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 9/186 (4%)

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           R  II +D L++D  K F+   P  +  N PY+I +++ F  +      P     T + Q
Sbjct: 22  RDNIIGEDFLRMDLCKVFS-HEPFVLTGNYPYDISSQIFFKMLDNKDLIP---CCTGMIQ 77

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNP 214
           +EV  R+ A   S  YG LSVL         +F +   VF P PKV S VI  +   +N 
Sbjct: 78  REVALRMAAGPGSKAYGILSVLVQAWYDVEYLFTVDESVFNPPPKVKSAVIRMMRNQVNE 137

Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET----NLRAENLSIEDFC 270
           + C     K++ +  F +RRK LR S+K++  +     A   T      R E LS++ F 
Sbjct: 138 LGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEQPASAEFFTLEMMTKRPEQLSVQQFV 197

Query: 271 RITNIL 276
            +TN++
Sbjct: 198 ELTNLV 203


>gi|326479389|gb|EGE03399.1| dimethyladenosine transferase dimethyltransferase [Trichophyton
           equinum CBS 127.97]
          Length = 378

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 12/219 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A+KVI +E D +   
Sbjct: 39  IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   RLE++  D +K +   +F++      I+N PY I + L F  ++ + 
Sbjct: 98  ELTKRVQGKPEQKRLEVLLGDVMKTEVP-YFDV-----CISNTPYQISSPLTFKLLATNP 151

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 152 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 208

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           S+V+  +P +       +    + + AF ++ KTLR S 
Sbjct: 209 SSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247


>gi|326471294|gb|EGD95303.1| dimethyladenosine transferase dimethyltransferase [Trichophyton
           tonsurans CBS 112818]
          Length = 378

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 12/219 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A+KVI +E D +   
Sbjct: 39  IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   RLE++  D +K +   +F++      I+N PY I + L F  ++ + 
Sbjct: 98  ELTKRVQGKPEQKRLEVLLGDVMKTEVP-YFDV-----CISNTPYQISSPLTFKLLATNP 151

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 152 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 208

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           S+V+  +P +       +    + + AF ++ KTLR S 
Sbjct: 209 SSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247


>gi|68304920|gb|AAY89931.1| predicted dimethyladenosine transferase NMA0902 [uncultured
           bacterium BAC13K9BAC]
          Length = 141

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 2/124 (1%)

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
            + QKEV +RI ++ N   YGRLSV+T        +F+IS +VF P PKV S+ I  +P 
Sbjct: 12  FMLQKEVVDRIISKPNIKVYGRLSVMTQAYFNTKKLFNISENVFTPKPKVKSSFIRLLPR 71

Query: 212 LNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269
            +        E    I + AF  RRKT+RQSL +    +      I + LRAENL+++D+
Sbjct: 72  KSIFKNSNHEEVFYNIVKSAFEGRRKTIRQSLSKYLSHDDYDNVNISSTLRAENLTVDDY 131

Query: 270 CRIT 273
             I+
Sbjct: 132 LLIS 135


>gi|307213901|gb|EFN89152.1| Dimethyladenosine transferase 1, mitochondrial [Harpegnathos
           saltator]
          Length = 294

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 72  KVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSP-I 119
           +++++EKD++F P   IL D  +    +++II DD ++   E  F        N   P +
Sbjct: 7   RIVLVEKDKRFEPTLDILADSFAMINRKVDIIFDDIMRAHIESLFPKEKKMNWNDKPPDL 66

Query: 120 RIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
            +I NLP+N+ T L+  W+ +       W      +TL FQKEV ER+ A ++S    RL
Sbjct: 67  FLIGNLPFNVSTPLIIQWLHSIAERRGAWAFGRTKMTLTFQKEVAERLVAPESSEQRCRL 126

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK---KITQEAFG 231
           SV+    T   + F I  HVF P P V   V+ F P     PC     K   KI +  F 
Sbjct: 127 SVMAQAWTFPVLRFVIPGHVFVPQPDVDVGVVSFTPLTK--PCTQHDFKFFEKIVRHVFS 184

Query: 232 KRRK 235
            R+K
Sbjct: 185 FRQK 188


>gi|332671564|ref|YP_004454572.1| dimethyladenosine transferase [Cellulomonas fimi ATCC 484]
 gi|332340602|gb|AEE47185.1| dimethyladenosine transferase [Cellulomonas fimi ATCC 484]
          Length = 329

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 128/299 (42%), Gaps = 37/299 (12%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     + P K +GQNF+LD   ++KI   +    G  V+E+G G G+LT  LL
Sbjct: 27  AGEIRALAERAGVRPTKTLGQNFVLDAGTVRKIVRQADVAAGERVVEVGPGLGSLTLGLL 86

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----------------------PNRLEIIQDDA 104
             GA  V+ +E D     +L +  + H                       +RL ++  DA
Sbjct: 87  EAGA-DVVAVEIDPVLARLLPETVASHVPGLVRVDGPPDGPVVLRDAGGRDRLTVVLRDA 145

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERIT 163
           L+V+         P+ ++ANLPYN+   +L  ++   D+     E   ++ Q EV +R+ 
Sbjct: 146 LEVE---ELPGPPPVALVANLPYNVSVPVLLTFLERFDS----LERALVMVQAEVADRLA 198

Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESL 222
           A   S  YG  S    W   A     +   VF+P P V S ++       P+     E +
Sbjct: 199 APPGSRTYGVPSAKAAWYAHARRTATVGRSVFWPVPNVDSALVRLDRREPPVTTATREQV 258

Query: 223 KKITQEAFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +   AF +RRK LR      +      E  L  AG++   R E L +E F RI   L
Sbjct: 259 FTVVDAAFAQRRKMLRPALATLAGSAAAAEAALVAAGVDPQARGERLDVEAFARIAEHL 317


>gi|221480961|gb|EEE19375.1| ribosomal RNA adenine dimethylase domain-containing protein,
           putative [Toxoplasma gondii GT1]
          Length = 914

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 132/272 (48%), Gaps = 23/272 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           PK+ +GQNFL D NI + IA S    S  G+ V+E+G G G +T+ LL    R +  +E 
Sbjct: 610 PKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPR-MSAVET 668

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNW 137
           D +   +L    S+    L II  D L+V +        + + +  NLP+ + ++LL   
Sbjct: 669 DPRAVSLL----SRRLPTLNIIHGDVLQVSWPDLAQERGTRLSVAGNLPFYLTSQLLCCL 724

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  D+W  F +   +  Q E+ ER+TA+     Y RLSV+        ++  +   VF+P
Sbjct: 725 L--DSWR-FIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKLPRSVFYP 781

Query: 198 SPKVTSTVIHFIPHLNPIPCCL-----ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            PKV + ++H      P+   L        + +   AFG+RRK LR SLK +    L H 
Sbjct: 782 VPKVDAALVHIKFRQEPLEKILCGVDPRQFRNVLHAAFGQRRKMLRSSLKPV----LPHS 837

Query: 253 AGIE---TNLRAENLSIEDFCRITNILTDNQD 281
             +     +LR + LS  DF  +T  +  ++D
Sbjct: 838 GAVPERFASLRPQQLSPTDFLELTEAIFPSKD 869


>gi|167470555|ref|ZP_02335259.1| dimethyladenosine transferase [Yersinia pestis FV-1]
          Length = 160

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 88/177 (49%), Gaps = 24/177 (13%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116
           +    + AR   + VIE D+     L    + HP   ++L I Q DA+KV+F +      
Sbjct: 53  E---PVAARMDHMTVIELDRDLAARL----ASHPQLKDKLTIHQQDAMKVNFSELSEQAG 105

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGR
Sbjct: 106 QPLRVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVRRLVAGPNSKTYGR 159


>gi|71013449|ref|XP_758591.1| hypothetical protein UM02444.1 [Ustilago maydis 521]
 gi|46098249|gb|EAK83482.1| hypothetical protein UM02444.1 [Ustilago maydis 521]
          Length = 334

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 14/219 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+K  V+E D +    
Sbjct: 56  GQHILKNPLVAQGIVDKANLKPTDMVLEVGPGTGNLTVRILE-KAKKTTVVEMDPRMAAE 114

Query: 86  LKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L       P   +L+I+  D  K D   +F++      I+N PY I + L+F  +S    
Sbjct: 115 LSKRVQGKPEQRKLDIMLGDFCKTDLP-YFDVC-----ISNTPYQISSPLVFKLLSHR-- 166

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P +    L+FQ+E   R+ A+     + RLS      +K   +  +S + F P P+V S
Sbjct: 167 -PLFRCAILMFQREFALRLIARPGDNLWCRLSANVQLYSKVDHIMKVSRNSFRPPPQVES 225

Query: 204 TVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241
           +V+   P LNP P    E    +T+  F +R KT+R S 
Sbjct: 226 SVVRITP-LNPPPAIPFEEFDGLTRIVFSRRNKTVRASF 263


>gi|300707711|ref|XP_002996053.1| hypothetical protein NCER_100912 [Nosema ceranae BRL01]
 gi|239605315|gb|EEQ82382.1| hypothetical protein NCER_100912 [Nosema ceranae BRL01]
          Length = 278

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 17/219 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ+ L ++  +  I E +       ++EIG G GNLT  ++    +K+I  E D + 
Sbjct: 8   KDLGQHILKNMGAIDTILEKAKIKPTDVILEIGGGTGNLTLKMIP-KCKKLICYEMDPRL 66

Query: 83  FP-ILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              ++K I++  ++ N+ ++   DA+K DF  +F++      I+NLPY I +  +F  ++
Sbjct: 67  ASELVKKINANREYANKFQLFIGDAMKHDFP-YFDMC-----ISNLPYQISSPFIFKLLT 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +     ++   ++FQKE  +R+ A+  S  Y RLSV      +   +  I  + F P P
Sbjct: 121 YN-----FKCAYIMFQKEFADRLIARPGSQDYCRLSVSVQLLAQVDHILKIKKNSFVPPP 175

Query: 200 KVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237
           KV S V+   P + P P    E    + +  F ++ KTL
Sbjct: 176 KVESAVVRIEPKI-PKPVINFEDFDALLKICFLRKNKTL 213


>gi|325177054|emb|CCA21009.1| dimethyladenosine transferase putative [Albugo laibachii Nc14]
          Length = 323

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 36/249 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSG--SL-----------DGITVIEIGAGPGNLTQMLLTL 68
           K+++GQ+ L+  +++  I +++   SL             I V+EIG+G GNLT  LL +
Sbjct: 17  KRHLGQHLLVSNDVIASIIKAADFPSLLLQKAGNQTEERRIRVLEIGSGTGNLTAALLDV 76

Query: 69  GAR-KVIVIEKDQQFFPILKDI------SSQ---HPNRLEIIQDDALKVDFEKFFNISSP 118
               +V  +E D      L+D       +SQ   H NR+E       K+     F+ S  
Sbjct: 77  DPTIQVHGVECDASMVKSLEDRFPSQLRTSQLQLHVNRIE-------KLRLSDLFSSSQG 129

Query: 119 I--RIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +   ++AN+PY + + ++   +S    +P   + + LL Q+E  +R+ A  ++ +YGRL+
Sbjct: 130 LIDAVVANIPYQLSSLIIARLVSYLHKYPGSVKCIILLLQEEFAQRMLATPHNQNYGRLA 189

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGK 232
           V T        +  + P VF P P+V S VI   PH       P  L     + +  F +
Sbjct: 190 VNTSLVGHVDALLKVGPEVFIPRPQVDSRVIKVTPHFPRFIRDPSFLREFDALLRICFLR 249

Query: 233 RRKTLRQSL 241
           + KTLR  L
Sbjct: 250 KNKTLRALL 258


>gi|261194984|ref|XP_002623896.1| dimethyladenosine transferase [Ajellomyces dermatitidis SLH14081]
 gi|239587768|gb|EEQ70411.1| dimethyladenosine transferase [Ajellomyces dermatitidis SLH14081]
          Length = 330

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 22/226 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKV 107
           TV+EIG G GNLT  +L   A+KVI +E D +    +       P   RLE++  D +K 
Sbjct: 10  TVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAAEVTKRVQGKPEQKRLEVLLGDVIKT 68

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   +F++      I+N PY I + L F  ++ +  P       L+FQ+E   R+ A+  
Sbjct: 69  DLP-YFDVC-----ISNTPYQISSPLTFKLLAINPAP---RVCILMFQREFAMRLFAKPG 119

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKIT 226
              Y RLSV      +   +  +  + F P P V S+V+  +P  NP P    +    + 
Sbjct: 120 DKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVESSVVRIVPK-NPRPQISYDEWDGLL 178

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA----ENLSIED 268
           + AF ++ KT+R S   LG  ++L    +E+N R      N+ +ED
Sbjct: 179 RVAFVRKNKTMRSSF--LGTTSVLDM--LESNYRTWCAQNNIPVED 220


>gi|308190242|ref|YP_003923173.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma
           fermentans JER]
 gi|307624984|gb|ADN69289.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma
           fermentans JER]
          Length = 258

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 12/224 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK  GQNFL D N++ KI E      G  ++EIG G G LT+ +L   A++    E
Sbjct: 6   KLKAKKRYGQNFLKDQNVISKIIELIKP-QGEKILEIGPGRGALTK-ILNQQAKEFTAFE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   +   N+ +I+Q D L  D EK+        ++ N+PY I + ++F  
Sbjct: 64  IDRDMVDYLQ--KNNILNQNQIVQGDFLIADLEKY----KDYVVVGNIPYYITSDIIFKL 117

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +   ++   L+ Q EV +R+ A+ N   Y +LS+   +         +    F P
Sbjct: 118 LD---YRHNFKKAILMVQNEVAQRLVAKPNQNDYSKLSITVQYCADVKKELFVKKTYFDP 174

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            PKV S ++  I   N      E+LK   +  F  RRK L  +L
Sbjct: 175 VPKVDSAIVS-ITFKNEENDNYENLKDFFKLCFLARRKKLSFAL 217


>gi|296271693|ref|YP_003654324.1| dimethyladenosine transferase [Arcobacter nitrofigilis DSM 7299]
 gi|296095868|gb|ADG91818.1| dimethyladenosine transferase [Arcobacter nitrofigilis DSM 7299]
          Length = 270

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 22/265 (8%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI  KK  GQNFL D  +L  I +S  + +   ++EIG G G+LT+ L+    + V   E
Sbjct: 3   KIKAKKKYGQNFLKDDTVLSMIIQSMPNNNN-HIVEIGPGLGDLTKNLVK--CKDVTAYE 59

Query: 78  KDQQFFPILKD-----ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            D   F ILK      I S     L +I  D L+   ++    +S   +IANLPY I T 
Sbjct: 60  VDTDLFAILKTKFAIPIDS---GSLTLIHADVLESWTKQKSLHNSKYDLIANLPYYIATN 116

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT-KATMMFDIS 191
           ++      +      E + ++ QKEV E+ +A +    +  L V++   + ++ ++FD+ 
Sbjct: 117 IILRAFEDEAC----EHIIVMVQKEVAEKFSANEGDKEFSALGVISKLCSIESKILFDVP 172

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE---- 247
           P  F P PKVTS++++    ++      ++     +  F + RK L +++  +  +    
Sbjct: 173 PESFDPPPKVTSSILYIKKDMS--KTMDKNFNSFLKACFQQPRKKLSKNVSSIVPKETIS 230

Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272
           +L  +  I  N+R   LS   + +I
Sbjct: 231 SLFEELEISDNIRPHELSASLYSQI 255


>gi|148699068|gb|EDL31015.1| RIKEN cDNA D530005L17 [Mus musculus]
          Length = 1620

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 19/234 (8%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVD 108
           V+E+G G GN+T  LL   A+KV+  E D +    L       P  ++L+++  D LK D
Sbjct: 163 VLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVAELHKRVQGTPLASKLQVLVGDVLKSD 221

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
              FF+       +ANLPY I +  +F  +      PF+    L+FQ+E   R+ A+   
Sbjct: 222 L-PFFDAC-----VANLPYQISSPFVFKLL---LHRPFFRCAILMFQREFALRLVAKPGD 272

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228
             Y RLS+ T        +  +  + F   PKV S+V+   P   P P   +    + + 
Sbjct: 273 KLYCRLSINTQLLAHVDHLMKVGKNNFRLPPKVESSVVRIEPKNPPPPINFQEWDDLVRI 332

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIEDFCRITNILT 277
            F ++ KTL  + K    + LL +       ++  + +E+ SI D  +I +ILT
Sbjct: 333 TFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVISEDFSIAD--KIQHILT 384


>gi|154151411|ref|YP_001405029.1| dimethyladenosine transferase [Candidatus Methanoregula boonei 6A8]
 gi|153999963|gb|ABS56386.1| dimethyladenosine transferase [Methanoregula boonei 6A8]
          Length = 254

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 113/265 (42%), Gaps = 32/265 (12%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D N +++IA     +    V+EIG G G LT+ LL  GA  V  +E D+     L
Sbjct: 7   QHFLIDKNAIERIA-GCADVKEKEVLEIGPGNGALTRALLDRGA-IVHAVELDRILCDEL 64

Query: 87  KD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            D          L +   DA K     F  +      ++NLPY+  +++ F  +      
Sbjct: 65  ADRFFEEIQKGTLTVTHGDATKCPLPPFEMV------VSNLPYSASSKITFRLLDLG--- 115

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             +    L++Q+E  ER+ A   +   GRLS++          F + P  F P P+V S 
Sbjct: 116 --FSVAVLMYQQEFAERMAAPAGTKDCGRLSIMVQTYATVQRCFTLPPACFSPKPQVHSM 173

Query: 205 VIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQA-------- 253
           V+  +P   P    +   K+   + +  F  RRKT+R  L+  G   +L           
Sbjct: 174 VVKIVPR--PPIFGVNDRKRYADVVRALFTHRRKTVRNGLR--GSSGILAPEWTKRVIDA 229

Query: 254 --GIETNLRAENLSIEDFCRITNIL 276
             G     R E L +EDF  I N +
Sbjct: 230 LPGEILQSRPEELYLEDFATIANFV 254


>gi|152993938|ref|YP_001359659.1| dimethyladenosine transferase [Sulfurovum sp. NBC37-1]
 gi|151425799|dbj|BAF73302.1| dimethyladenosine transferase [Sulfurovum sp. NBC37-1]
          Length = 284

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 123/268 (45%), Gaps = 23/268 (8%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQNFL     L++I ++  + DG+ V EIG G G+LT+ L+   AR V   E D++ 
Sbjct: 12  KKFGQNFLKSDYYLQQIIQAMPN-DGLRVAEIGPGLGDLTKELVK--ARNVTAFEVDKRL 68

Query: 83  FPILKDISSQ--HPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTRLLFNW 137
              L     +  H    E+   D L    E++ +   +  P  ++ANLPY I T ++   
Sbjct: 69  CEHLTSEFEEPIHNGSFELRCGDVL----ERWASGSLLDEPYHLVANLPYYIATNIILKA 124

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  +       S+ ++ QKEV  +  A+     +  LSVL     KAT+ F++    F P
Sbjct: 125 LKDE----HCRSVLVMVQKEVAVKFAAEAGEKAFSALSVLASTVGKATLCFEVEREAFVP 180

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE- 256
            P VTS V+    + +      E+  KI   AF + RK L ++L     ++L+ +   E 
Sbjct: 181 PPNVTSAVLLIEKNRSFDDEKFEAFLKI---AFSQPRKKLSKNLMTAFPKDLVKKTFAEL 237

Query: 257 ---TNLRAENLSIEDFCRITNILTDNQD 281
              + +R        +  + N L DN D
Sbjct: 238 ELPSTMRPHEAGTSIYHHLYNELKDNLD 265


>gi|296241774|ref|YP_003649261.1| ribosomal RNA adenine methylase transferase [Thermosphaera
           aggregans DSM 11486]
 gi|296094358|gb|ADG90309.1| ribosomal RNA adenine methylase transferase [Thermosphaera
           aggregans DSM 11486]
          Length = 249

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 30/227 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P K + QNF+++  ++  I   + + D    IEIG G G LT  L+    R +  IE 
Sbjct: 6   IRPSKKLSQNFVVNPRLITSILSLTSNED---TIEIGCGIGTLTIFLVN-RVRSLACIEY 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++   I+ +I  + P R   ++ DAL         +  P ++++NLPY+I + +L   I
Sbjct: 62  DERMIKIVSNIV-RSP-RFIPVKGDALTT------GVGRP-QVVSNLPYHITSDILI-MI 111

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS------P 192
           + D          L  QKEVGER+ A+  +  YGRL+V+      A ++F+I       P
Sbjct: 112 ARDNS---ISKAVLTLQKEVGERLVAKAGTESYGRLTVI------AQLLFNIRITGVYPP 162

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
             F P PKV S+++  +  +      +E ++ +T+  F +RR+  R+
Sbjct: 163 SSFIPRPKVESSLV-LLERIRDYDKVVEKVEHVTRALFSQRRRNARR 208


>gi|33861490|ref|NP_893051.1| dimethyladenosine transferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|62900569|sp|Q7V1E1|RSMA_PROMP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33634067|emb|CAE19392.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 277

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 24/267 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL     ++  IE D+ 
Sbjct: 9   KKRFGQHWLVNNLILEKIKEVAELEEKDFILEIGPGRGALTSKLLDSKISRLHAIELDED 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLL------ 134
              +L +      N   + Q D L  + +   +I+  I ++IAN+PYNI   +L      
Sbjct: 69  LIDLLNNKFRNDKN-FSLQQGDILSTNLD---SINKKITKVIANIPYNITGPILDIFVGR 124

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
              IS + +      +  L QK+V +RI A+  + + G +SV     +    + D+ P  
Sbjct: 125 LGIISKNNY----NKIIFLMQKDVVDRILAKDGNTNAGAMSVRMQLISNIRRICDVPPSS 180

Query: 195 FFPSPKVTSTVIHFIPHLNP---IPCCLES-LKKITQEAFGKRRKTLRQSLKRLGG---- 246
           F P PKV ST++ F P L P   +   LE  L K+ + +F  RRK +R +L  +      
Sbjct: 181 FDPPPKVFSTLVVFEP-LRPEMRLDIKLEKYLDKLLRISFNSRRKMIRNTLNSILSAEEI 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRIT 273
           E L   + I  N R +++SI  + ++ 
Sbjct: 240 EKLSESSQICFNSRPQDISINKWIKLA 266


>gi|187251110|ref|YP_001875592.1| dimethyladenosine transferase [Elusimicrobium minutum Pei191]
 gi|186971270|gb|ACC98255.1| Dimethyladenosine transferase [Elusimicrobium minutum Pei191]
          Length = 261

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 118/259 (45%), Gaps = 22/259 (8%)

Query: 22  KKYMGQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +KY GQ+FL++  ++ KI     ++        +IEIG G G LT  LL  G + + +IE
Sbjct: 2   QKY-GQHFLVNEGVIDKIVNAVVDARARHPKARIIEIGPGKGALTLRLLDKGIKDLKLIE 60

Query: 78  KDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D    PI+ D +    P+ +EIIQ D L  D        + +  ++NLPY     +L  
Sbjct: 61  ID----PIMVDHLRGVLPSGVEIIQSDFLDTDLSLLS--ENGVIFVSNLPYINAAEILNK 114

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++   +     S   +FQ+E  +RI A +    Y  +S+ +        +  +SP  F 
Sbjct: 115 VLNYKNFL----SAVFMFQREQAQRIKAGEGDTFYSPISLTSQIAADIKSLCRVSPGSFN 170

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN------LL 250
           P PKV S V+ F  ++      L       Q AF  +RK +  S+     ++      LL
Sbjct: 171 PPPKVESEVLCFERNIKIQEDLLNGFTLAVQAAFAYKRKNVLNSISEYFKKDKKEIFSLL 230

Query: 251 HQAGIETNLRAENLSIEDF 269
             + I  N RA+NL+  D+
Sbjct: 231 ESSKISPNCRAQNLTQTDY 249


>gi|258574477|ref|XP_002541420.1| dimethyladenosine transferase [Uncinocarpus reesii 1704]
 gi|237901686|gb|EEP76087.1| dimethyladenosine transferase [Uncinocarpus reesii 1704]
          Length = 349

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 16/236 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+KV+ +E D +   
Sbjct: 38  IGQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVVAVELDPRMAA 96

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            +       P   RLE++  D +K D   +F++      I+N PY I + L F  ++   
Sbjct: 97  EVTKRVQGTPEQKRLEVLLGDVIKTDLP-YFDV-----CISNTPYQISSPLTFKLLATTP 150

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 151 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 207

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           S+V+  +P +       +    + + AF ++ KTLR S   LG  ++L+   +E+N
Sbjct: 208 SSVVRIVPKVPRPDISYDEWDGLLRVAFVRKNKTLRSSF--LGTSSVLNM--LESN 259


>gi|237844915|ref|XP_002371755.1| dimethyladenosine synthase, putative [Toxoplasma gondii ME49]
 gi|211969419|gb|EEB04615.1| dimethyladenosine synthase, putative [Toxoplasma gondii ME49]
          Length = 908

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 133/272 (48%), Gaps = 23/272 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           PK+ +GQNFL D NI + IA S    S  G+ V+E+G G G +T+ LL    R +  +E 
Sbjct: 604 PKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPR-MSAVET 662

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNW 137
           D +   +L    S+    L II  D L+V +        + + +  NLP+ + ++LL   
Sbjct: 663 DPRAVSLL----SRRLPTLNIIHGDVLQVSWPDLARERGTRLSVAGNLPFYLTSQLLCCL 718

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  D+W  F +   +  Q E+ ER+TA+     Y RLSV+        ++  +   VF+P
Sbjct: 719 L--DSWR-FIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKLPRSVFYP 775

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESL-----KKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            PKV + ++H      P+   L  +     + +   AFG+RRK LR SLK +    L H 
Sbjct: 776 VPKVDAALVHIKFRQEPLEKILRGVDPRQFRNVLHAAFGQRRKMLRSSLKPV----LPHG 831

Query: 253 AGIE---TNLRAENLSIEDFCRITNILTDNQD 281
             +     +LR + LS  DF  +T  +  ++D
Sbjct: 832 GAVPERFASLRPQQLSPTDFLELTEAIFPSKD 863


>gi|21228641|ref|NP_634563.1| dimethyladenosine transferase [Methanosarcina mazei Go1]
 gi|20907141|gb|AAM32235.1| Dimethyladenosine transferase [Methanosarcina mazei Go1]
          Length = 209

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 25/217 (11%)

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           +I +E D     +L D      N +EII  DALKVDF +F       ++++NLPY+I + 
Sbjct: 1   MIAVELDPALVSVLHDRFDAAEN-IEIIAGDALKVDFPEF------DKVVSNLPYSISSE 53

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           + F  +        ++   L++Q E   R+ +      Y RL++ T +   A+++  +  
Sbjct: 54  ITFKLLRHK-----FKLGVLMYQYEFAVRMVSPPGCKDYSRLTIDTCYFADASIVMKVPK 108

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
             F P+P+V S VI  IP   P     E+   +     F +RRK LR ++  L   +LL 
Sbjct: 109 GAFQPAPEVDSAVIKLIPRPAPFEVRDETFFLQFVAAVFSQRRKKLRNAI--LNTSSLLK 166

Query: 252 QAGIE----------TNLRAENLSIEDFCRITNILTD 278
              I+           N RAE+L+ E+   + N++ D
Sbjct: 167 IPDIKEIVSQLPEDFMNKRAEDLTPEELASVANMIFD 203


>gi|46121341|ref|XP_385225.1| hypothetical protein FG05049.1 [Gibberella zeae PH-1]
          Length = 346

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 121/263 (46%), Gaps = 17/263 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I   I   +      TV+EIG G G LT  +L   A+ V  +E D +   
Sbjct: 32  IGQHILKNPGIADTIVAKAYLKPTDTVLEIGPGTGVLTTRILE-QAKAVKAVELDTRMAA 90

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141
            L       P   +LEII  D  K+D  +      PI + I+N PY I + ++   IS  
Sbjct: 91  ELTKRVQGGPLQQKLEIIMGDFAKLDVVQAL---PPIDVCISNTPYQISSIIVSKLISMP 147

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P       L+ Q+E G R+ A+     Y RLSV T + +K +M+  +  + F P P+V
Sbjct: 148 KPPRVS---ILMVQREFGLRLCARAGDSLYSRLSVNTQFTSKVSMVAKVGKNNFSPPPEV 204

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-TNLR 260
            S V+   P  +     LE L  + +  F ++ KTLR S   L    +  +  I  T++ 
Sbjct: 205 ESVVVRIEPRTDVPAVGLEELDGVLRICFSRKNKTLRASF--LDSHEICERNWITWTSMY 262

Query: 261 AENLSIEDFCRITNILTDNQDIA 283
            + +S +D     ++L D+ D A
Sbjct: 263 PDKVSEKDL----DLLRDSMDTA 281


>gi|229083358|ref|ZP_04215712.1| Dimethyladenosine transferase [Bacillus cereus Rock3-44]
 gi|228699951|gb|EEL52582.1| Dimethyladenosine transferase [Bacillus cereus Rock3-44]
          Length = 185

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 14/183 (7%)

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
           F + F     + ++ANLPY + T +LF  +  +  P       ++ QKEVG+R+ A+  +
Sbjct: 5   FGEQFEEGQDVMVVANLPYYVTTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGT 61

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKIT 226
             YG LS+   + T+   +  +   VF P P V S VI  +    PI    +     ++ 
Sbjct: 62  KDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRILKRPQPIVEVTDEKFFFEVV 121

Query: 227 QEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           + +F +RRKTL  +L              E +L + GI+   R E LSIE+F  ++N L 
Sbjct: 122 RASFAQRRKTLMNNLSNNLNGFPKDKELLERILTEVGIDPKRRGETLSIEEFAVLSNALV 181

Query: 278 DNQ 280
            ++
Sbjct: 182 SHK 184


>gi|19112914|ref|NP_596122.1| 18S rRNA dimethylase [Schizosaccharomyces pombe 972h-]
 gi|26556992|sp|Q9USU2|DIM1_SCHPO RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|6048291|emb|CAB58154.1| 18S rRNA dimethylase [Schizosaccharomyces pombe]
          Length = 307

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 12/222 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  + + I + +      TV+E+G G GNLT  +L   ARKVI +E D + 
Sbjct: 26  KDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLE-KARKVIAVEMDPRM 84

Query: 83  FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +       P   +L+++  D +K D   +F++      ++N PY I + L+F  +  
Sbjct: 85  AAEITKRVQGTPKEKKLQVVLGDVIKTDLP-YFDVC-----VSNTPYQISSPLVFKLLQQ 138

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              P    +  L+FQ+E   R+ A+   P Y RLS           +  +  + F P P 
Sbjct: 139 RPAP---RAAILMFQREFALRLVARPGDPLYCRLSANVQMWAHVKHIMKVGKNNFRPPPL 195

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           V S+V+   P   P P   E    + +  F ++ KT+    K
Sbjct: 196 VESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFK 237


>gi|258545947|ref|ZP_05706181.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826]
 gi|258518825|gb|EEV87684.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826]
          Length = 136

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + QKEV +RITA   S  YGRLS++     + T +FDI P  F P PKV S V+  +P  
Sbjct: 4   MLQKEVVDRITAAPGSKTYGRLSLMAQLWCETTALFDIPPDAFDPPPKVDSAVVRLVPR- 62

Query: 213 NPIPCC----LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIED 268
            P P      L + ++  + AF +RRK LR++         L    I+   RAE L    
Sbjct: 63  -PAPAWQIDDLATFEETVRLAFAQRRKMLRKTFAHWMNAAALEALDIDPTARAETLDGAA 121

Query: 269 FCRITN 274
           F R+ N
Sbjct: 122 FARLAN 127


>gi|303312255|ref|XP_003066139.1| dimethyladenosine transferase, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240105801|gb|EER23994.1| dimethyladenosine transferase, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320040136|gb|EFW22070.1| dimethyladenosine transferase [Coccidioides posadasii str.
           Silveira]
          Length = 379

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 14/228 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+KVI +E D +   
Sbjct: 38  IGQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 96

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            +       P   RLE++  D +K D   +F++      I+N PY I + L F  ++   
Sbjct: 97  EVTKRVQGKPEQKRLEVLLGDVIKTDLP-YFDV-----CISNTPYQISSPLTFKLLATTP 150

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 151 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 207

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           S+V+  +P         +    + + AF ++ KTLR S   LG  ++L
Sbjct: 208 SSVVRIVPKTPRPDISYDEWDGLLRIAFVRKNKTLRSSF--LGTSSVL 253


>gi|119193222|ref|XP_001247217.1| hypothetical protein CIMG_00988 [Coccidioides immitis RS]
          Length = 346

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 14/228 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+KVI +E D +   
Sbjct: 5   IGQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 63

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            +       P   RLE++  D +K D   +F++      I+N PY I + L F  ++   
Sbjct: 64  EVTKRVQGKPEQKRLEVLLGDVIKTDLP-YFDVC-----ISNTPYQISSPLTFKLLATTP 117

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 118 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 174

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           S+V+  +P         +    + + AF ++ KTLR S   LG  ++L
Sbjct: 175 SSVVRIVPKTPRPDISYDEWDGLLRIAFVRKNKTLRSSF--LGTSSVL 220


>gi|325123521|gb|ADY83044.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 160

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 7/146 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E D+ 
Sbjct: 17  RKRFGQNFLHDQRVIAKIVRSVSPRTGDNIVEIGPGLAALTSPLIG-ECDALTVVELDRD 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L +    HP RL II+ DALK DF +      P+R++ NLPYNI T LLF+ +   
Sbjct: 76  LAAGLPE-RVPHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHLLEFG 134

Query: 142 TWPPFWESLTLLFQKEVGERITAQKN 167
           +     + +  + QK +  RI  QKN
Sbjct: 135 SK---VKDMHFMLQKVLLNRI--QKN 155


>gi|56807419|ref|ZP_00365386.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Streptococcus pyogenes M49 591]
          Length = 136

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 6/128 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    A
Sbjct: 10  KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAE-NA 68

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLP 126
            +V+  E D +  PIL D      N ++++  D LK D     ++F N   PI+++ANLP
Sbjct: 69  AEVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIQQFKNPDLPIKVVANLP 127

Query: 127 YNIGTRLL 134
           Y I T +L
Sbjct: 128 YYITTPIL 135


>gi|217073100|gb|ACJ84909.1| unknown [Medicago truncatula]
          Length = 225

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 11/180 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD-QQ 81
           K  GQ+ L +  ++  I + SG      V+EIG G GNLT+ LL  G +KVI +E D + 
Sbjct: 28  KSKGQHILKNPLLVDTIVQKSGIKTTDVVLEIGPGTGNLTKKLLEAG-KKVIAVEIDPRM 86

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              + K       +RL +IQ D LK +   +F+I      +AN+PY I + L F  +   
Sbjct: 87  VLELNKRFQGTPSSRLTVIQGDVLKTELP-YFDIC-----VANIPYQISSPLTFKLLKHQ 140

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P +    ++FQ+E   R+ AQ     Y RL+V T    + + +  +  + F P PK+
Sbjct: 141 ---PAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARISHLLKVGRNNFTPPPKL 197


>gi|67525711|ref|XP_660917.1| hypothetical protein AN3313.2 [Aspergillus nidulans FGSC A4]
 gi|40744101|gb|EAA63281.1| hypothetical protein AN3313.2 [Aspergillus nidulans FGSC A4]
 gi|259485718|tpe|CBF82976.1| TPA: dimethyladenosine transferase (AFU_orthologue; AFUA_7G04860)
           [Aspergillus nidulans FGSC A4]
          Length = 403

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 11/217 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I   I + +      TV+E+G GPG LT  +L   A+KV+ +E D +   
Sbjct: 43  LGQHILKNGAIADNIVDKANVQPSQTVLEVGPGPGILTTRILE-KAKKVVAVEFDPRMAA 101

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141
            L       P   +L+I+  D +K D  K      P ++ I+N PY I + L+F  +S  
Sbjct: 102 ELTKRVQATPMEKKLQIVLGDFIKTDLSKL----PPFQVCISNTPYQISSPLIFKLLSMP 157

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P   +   L+ Q+E   R+ A+     Y RLSV   + +K + +  +  + F P P+V
Sbjct: 158 NPP---KMCVLMVQREFALRLLARPGDALYSRLSVNVQFFSKVSHIMKVGRNNFRPPPQV 214

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            S+V+   P L       +    + +  F ++ KTLR
Sbjct: 215 ESSVVRIEPKLGKPEISWDEWDGMLRICFVRKNKTLR 251


>gi|307069663|ref|YP_003878140.1| putative dimethyladenosine transferase [Candidatus Zinderia
           insecticola CARI]
 gi|306482923|gb|ADM89794.1| putative dimethyladenosine transferase [Candidatus Zinderia
           insecticola CARI]
          Length = 254

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 88/163 (53%), Gaps = 16/163 (9%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G GNLT+ L+      +  IE D++ +   K++  ++ N++ +   + LK + +
Sbjct: 34  ILEIGFGNGNLTKYLIKYKIF-LFAIEIDKKLY---KNLKIKYKNKINLFNYNILKFNIK 89

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLFQKEVGERITAQKN 167
            F   +   RII NLPYNI  +++  +I       F++++    ++ QKE  ++I A   
Sbjct: 90  IF---NKKFRIIGNLPYNISKKIILYFIK------FYKNIKDIYVMLQKEFVKKINANYG 140

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
           +  + ++S+LT  +    ++ +IS   F+P PKV S  I  IP
Sbjct: 141 NKKFSKISILTQIKFNIIILLNISKKNFYPIPKVNSYFIKMIP 183


>gi|156055498|ref|XP_001593673.1| hypothetical protein SS1G_05101 [Sclerotinia sclerotiorum 1980]
 gi|154702885|gb|EDO02624.1| hypothetical protein SS1G_05101 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 383

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 118/264 (44%), Gaps = 25/264 (9%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A+KVI +E D + 
Sbjct: 32  KDYGQHILKNPGVAEAIVKKANLKPTDTVLEVGPGTGNLTVRILE-SAKKVIAVEVDPRM 90

Query: 83  FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +       P   RLE++  D +K +    F++      I+N PY I + L+F  +S 
Sbjct: 91  AAEVTKRVQGKPEQKRLEVLLGDVIKTEL-PHFDV-----CISNTPYQISSPLVFKLLSL 144

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              P       L+FQ+E   R+TA+     Y RLSV   +  K T +  +  + F P P+
Sbjct: 145 PNPP---RCSVLMFQREFALRLTARPGDSLYCRLSVNAQFFAKITHIMKVGKNNFRPPPQ 201

Query: 201 VTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S+V+   P           E    + +  F ++ +T+R S   LG + +L  A  E N
Sbjct: 202 VESSVVRIEPKTGKERPGVSWEEWDGMLRICFVRKNRTMRASW--LGMKQVL--AMCERN 257

Query: 259 LRAENLSIEDFCRITNILTDNQDI 282
            R        +C   NI  D   +
Sbjct: 258 YRV-------YCSTNNIALDETPV 274


>gi|121711417|ref|XP_001273324.1| dimethyladenosine transferase [Aspergillus clavatus NRRL 1]
 gi|119401475|gb|EAW11898.1| dimethyladenosine transferase [Aspergillus clavatus NRRL 1]
          Length = 393

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 11/217 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I   I + +      TV+E+G GPG LT  +L   A+KV+ +E D +   
Sbjct: 40  IGQHILKNPTIADAIVDKANIQPSQTVLEVGPGPGILTTRILQ-KAKKVVAVELDPRMAA 98

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141
            L       P   +L+I+  D +K D  K      P +I I+N PY I + L+F  +S  
Sbjct: 99  ELTKTVQATPAEKKLQIVLGDFVKTDLSKL----PPFQICISNTPYQISSPLIFKLLSMP 154

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P   ++  L+ Q+E   R+ A+     Y RLSV   + ++ + +  +  + F P P+V
Sbjct: 155 NPP---KTCVLMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHIMKVGKNNFRPPPQV 211

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            S+V+   P  +      +    + +  F ++ KTLR
Sbjct: 212 ESSVVRVEPKADRPDISWDEWDGMLRICFVRKNKTLR 248


>gi|169765912|ref|XP_001817427.1| dimethyladenosine transferase [Aspergillus oryzae RIB40]
 gi|238482523|ref|XP_002372500.1| dimethyladenosine transferase [Aspergillus flavus NRRL3357]
 gi|83765282|dbj|BAE55425.1| unnamed protein product [Aspergillus oryzae]
 gi|220700550|gb|EED56888.1| dimethyladenosine transferase [Aspergillus flavus NRRL3357]
          Length = 392

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 11/217 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I   I + +    G TV+E+G GPG LT  +L   A+KV+ +E D +   
Sbjct: 39  LGQHILKNGAIADAIVDKANIQQGQTVLEVGPGPGVLTNRILA-KAKKVVAVEVDPRMAA 97

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141
            L       P   +L+I+  D +K D  +      P +I I+N PY I + L+F  +S  
Sbjct: 98  ELTKNVQGTPAEKKLQIVLGDFVKTDLSQL----PPFQICISNTPYQISSPLIFKLLSMP 153

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P   +   L+ Q+E   R+ A+     Y RLSV   + ++   +  +  + F P P+V
Sbjct: 154 NPP---KMCVLMVQREFALRLVARPGDSLYSRLSVNVQFFSRVQHIMKVGRNNFRPPPQV 210

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            S+V+   P  +      +    + +  F ++ KTLR
Sbjct: 211 ESSVVRVEPKSDRPAISWDEWDGMLRICFVRKNKTLR 247


>gi|229170892|ref|ZP_04298495.1| Dimethyladenosine transferase [Bacillus cereus MM3]
 gi|228612558|gb|EEK69777.1| Dimethyladenosine transferase [Bacillus cereus MM3]
          Length = 183

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 14/179 (7%)

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
           F + F     + ++ANLPY I T +LF  +  +  P       ++ QKEVG+R+ A+  +
Sbjct: 2   FSEQFEEGQDVMVVANLPYYITTPILFKLLE-EKLP--VRGFVVMMQKEVGDRLAAKPGT 58

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKIT 226
             YG LS+   + T+   +  +   VF P P V S +I  +    P+    +     ++ 
Sbjct: 59  KEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVV 118

Query: 227 QEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           + +F +RRKTL  +L              + +L + GI+   R E LSIE+F  ++N L
Sbjct: 119 RASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 177


>gi|221501682|gb|EEE27446.1| riboxomal RNA adenine dimethylase domain-containing protein,
           putative [Toxoplasma gondii VEG]
          Length = 912

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 130/277 (46%), Gaps = 28/277 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGAR-----KV 73
           PK+ +GQNFL D NI + IA S    S  G+ V+E+G G G +T+ LL    R      +
Sbjct: 603 PKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPRMSDFVDL 662

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTR 132
              E D    P    +S   P  L II  D L+V +        + + +  NLP+ + ++
Sbjct: 663 CSCETD----PRAVSLSRASPT-LNIIHGDVLQVSWPDLARERGTRLSVAGNLPFYLTSQ 717

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           LL   +  D+W  F +   +  Q E+ ER+TA+     Y RLSV+        ++  +  
Sbjct: 718 LLCCLL--DSWR-FIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKLPR 774

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCL-----ESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            VF+P PKV + ++H      P+   L        + +   AFG+RRK LR SLK +   
Sbjct: 775 SVFYPVPKVDAALVHIKFRQEPLEKILCGVDPRQFRNVLHAAFGQRRKMLRSSLKPV--- 831

Query: 248 NLLHQAGIE---TNLRAENLSIEDFCRITNILTDNQD 281
            L H   +     +LR + LS  DF  +T  +  ++D
Sbjct: 832 -LPHSGAVPERFASLRPQQLSPTDFLELTEAIFPSKD 867


>gi|317027289|ref|XP_001400595.2| dimethyladenosine transferase [Aspergillus niger CBS 513.88]
          Length = 387

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 18/249 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + ++I + +       V+EIG G GNLT  +L   A+KVI +E D +   
Sbjct: 38  LGQHILKNPGVAQRIVDKAELKQSDVVLEIGPGTGNLTVKILE-QAKKVIAVELDPRMAA 96

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            +       P   RL++I  D +K D   +F++      I+N PY I + L F  ++   
Sbjct: 97  EVTKRVQGTPAQKRLDVILGDVIKTDLP-YFDVC-----ISNTPYQISSPLTFKLLATSP 150

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 151 APRI---CVLMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPLVE 207

Query: 203 STVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--QAGIETNL 259
           S+V+  +P  NP P    +    + +  F ++ KT+R S   LG   ++   +A   T  
Sbjct: 208 SSVVRLVPK-NPRPQINYDEWDGLLRILFVRKNKTIRSSF--LGKSTVMDMLEANYRTWC 264

Query: 260 RAENLSIED 268
              ++ +ED
Sbjct: 265 AQNDIPVED 273


>gi|322710252|gb|EFZ01827.1| dimethyladenosine transferase dimethyltransferase [Metarhizium
           anisopliae ARSEF 23]
          Length = 388

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 117/257 (45%), Gaps = 25/257 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84
           GQ+ L +  +   I E +      TV+EIG G GNLT  +L   A+K I +E D +    
Sbjct: 43  GQHILKNPGVSDAIVEKAYLKPTDTVLEIGPGTGNLTVRILER-AKKCICVELDPRMAAE 101

Query: 85  ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           + K +      R LE+I  D +K +  +F         I+N PY I + L+F  ++    
Sbjct: 102 VTKRVQGTPEQRKLEVILGDVIKTELPQF------DVCISNTPYQISSPLVFKLLAMPNP 155

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P    +  L+FQ+E   R+TA+   P Y R+SV   +  K T +  +  + F P P+V S
Sbjct: 156 P---RTSVLMFQREFALRLTARPGEPLYSRISVNAQFWAKITHIMKVGKNNFRPPPQVES 212

Query: 204 TVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
           +V+   P +  +      +    + +  F ++ KTLR S   LG   +L    +E N R 
Sbjct: 213 SVVRIEPKVGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTREVLTM--VEKNYRT 268

Query: 262 ENLSIEDFCRITNILTD 278
                  +C +  +  D
Sbjct: 269 -------WCAMNGVAVD 278


>gi|134057541|emb|CAK48895.1| unnamed protein product [Aspergillus niger]
          Length = 319

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 18/239 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + ++I + +       V+EIG G GNLT  +L   A+KVI +E D +   
Sbjct: 38  LGQHILKNPGVAQRIVDKAELKQSDVVLEIGPGTGNLTVKILE-QAKKVIAVELDPRMAA 96

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            +       P   RL++I  D +K D   +F++      I+N PY I + L F  ++   
Sbjct: 97  EVTKRVQGTPAQKRLDVILGDVIKTDLP-YFDVC-----ISNTPYQISSPLTFKLLATSP 150

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 151 AP---RICVLMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPLVE 207

Query: 203 STVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           S+V+  +P  NP P    +    + +  F ++ KT+R S   LG   ++    +E N R
Sbjct: 208 SSVVRLVPK-NPRPQINYDEWDGLLRILFVRKNKTIRSSF--LGKSTVMDM--LEANYR 261


>gi|321311060|ref|YP_004193389.1| rRNA small subunit methyltransferase A [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802904|emb|CBY93550.1| rRNA small subunit methyltransferase A [Mycoplasma haemofelis str.
           Langford 1]
          Length = 263

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 14/255 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ FL +  I ++IAE    LD   ++E+G G G +TQ +    +RK  ++E D  
Sbjct: 5   KKRWGQVFLKNKRIQERIAEYINLLDAKNLLEVGPGEGAITQYI-NYESRKFSLVEIDSY 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +L++   ++P+ + II  D L +D E  F+    + +  N+PY I + +L  +  + 
Sbjct: 64  LVGLLRE---RYPD-INIIFGDFLNLDLENLFSEREGL-VFGNIPYYITSPILRKFSESK 118

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           ++         + QKEV E IT+     +Y   +V          +F +    F P PKV
Sbjct: 119 SF----SQAVFMVQKEVFESITSPPKGKNYTSFAVFLQTINDIRKVFYVGKENFVPVPKV 174

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLHQAGIET 257
            S VIH +     I   L       +++F   RK L  + K+       E +  +  ++ 
Sbjct: 175 DSAVIHLVKKNTKILPYLNEYSLFLKKSFFMPRKKLVNNWKKFLSSEAIEEIFEEHNMDN 234

Query: 258 NLRAENLSIEDFCRI 272
           ++R + +S + + +I
Sbjct: 235 SVRPDEISSDLYEKI 249


>gi|322699660|gb|EFY91420.1| dimethyladenosine transferase dimethyltransferase [Metarhizium
           acridum CQMa 102]
          Length = 390

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 117/257 (45%), Gaps = 25/257 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84
           GQ+ L +  +   I E +      TV+EIG G GNLT  +L   A+K I +E D +    
Sbjct: 43  GQHILKNPGVSDAIVEKAYLKPTDTVLEIGPGTGNLTVRILER-AKKCICVELDPRMAAE 101

Query: 85  ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           + K +      R LE++  D +K +  +F         I+N PY I + L+F  ++    
Sbjct: 102 VTKRVQGTPEQRKLEVVLGDVIKTELPQF------DVCISNTPYQISSPLVFKLLAMPNP 155

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P    +  L+FQ+E   R+TA+   P Y R+SV   +  K T +  +  + F P P+V S
Sbjct: 156 P---RTSVLMFQREFALRLTARPGDPLYSRISVNAQFWAKITHIMKVGKNNFRPPPQVES 212

Query: 204 TVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
           +V+   P +  +      +    + +  F ++ KTLR S   LG   +L    +E N R 
Sbjct: 213 SVVRIEPKVGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTREVLTM--VEKNYRT 268

Query: 262 ENLSIEDFCRITNILTD 278
                  +C +  +  D
Sbjct: 269 -------WCAMNGVAVD 278


>gi|111225627|ref|YP_716421.1| dimethyladenosine transferase [Frankia alni ACN14a]
 gi|111153159|emb|CAJ64908.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) [Frankia alni ACN14a]
          Length = 274

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 106/231 (45%), Gaps = 18/231 (7%)

Query: 50  TVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILK-----DISSQHPNRLEIIQDD 103
           TV+EIG G G++T  LL T GA  V+ +E D      L       + ++   RL ++  D
Sbjct: 15  TVLEIGPGLGSMTLGLLGTAGA--VVAVEVDPPLAAALPVTVAARLPAEAAARLHVVLAD 72

Query: 104 ALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
            L++        + +P  + ANLPYNI   LL   +  +  P     L ++ Q EV +R+
Sbjct: 73  GLRLGPADLPAGVPAPDVLAANLPYNIAVPLLLGVL--ERLPSLRRGL-VMVQAEVADRL 129

Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES- 221
           TA   S  YG  SV   W  ++     +   VF+P P V S ++ F     P P  L + 
Sbjct: 130 TAPPGSRVYGAPSVKLAWYARSRPAGGVPRPVFWPQPNVDSGLVAFTRRTPPAPAELRAE 189

Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIE 267
           +      AF +RRKTLR +L    G       L   AG++   R E L +E
Sbjct: 190 VFAAVDAAFAQRRKTLRTALVPWAGSRDAATALAEAAGVDPGARGETLDVE 240


>gi|301101445|ref|XP_002899811.1| dimethyladenosine transferase, putative [Phytophthora infestans
           T30-4]
 gi|262102813|gb|EEY60865.1| dimethyladenosine transferase, putative [Phytophthora infestans
           T30-4]
          Length = 349

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 31/241 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSG----SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVI 76
           K+ +GQ+ L+   IL +I  +S       D + V+EIG G GNLT  LL +  + +V  +
Sbjct: 37  KRKLGQHLLVSDGILDQIVAASELSDICSDTVRVLEIGPGTGNLTSTLLQVSPKMQVHAV 96

Query: 77  EKDQQFFPILK-----DISS-----QHPN--RLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           E D +    LK     +I S     +H +      + D   + + EK FN       +AN
Sbjct: 97  EFDPRMVEQLKLRFPTEIESGSLVLEHSDFEDFRFVPDQKQETNQEKIFNA-----CVAN 151

Query: 125 LPYNIGTRL---LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +PY + + +   L N++    +P  ++   LL Q+E   R+ A+  +  Y RLS  T   
Sbjct: 152 IPYQLSSIVVSRLSNYM--HRFPKTFKCAVLLVQEEFASRLLAEPGNKSYSRLSANTALV 209

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTL 237
              T +  +    F P PKV S VI  +P    +P       +    + +  F ++ KTL
Sbjct: 210 ANVTSVAKVPREHFLPPPKVDSRVIKLVPRAAALPSHDEQFFQKFDALLRLCFERKNKTL 269

Query: 238 R 238
           R
Sbjct: 270 R 270


>gi|157413292|ref|YP_001484158.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9215]
 gi|166987696|sp|A8G4P1|RSMA_PROM2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157387867|gb|ABV50572.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 274

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 16/263 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL    +K+  +E D  
Sbjct: 9   KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTAKLLDSKIKKLHAVELDND 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS- 139
              +L D    + ++  +   D L V+ +   +I+  I ++IAN+PYNI   +L  +I  
Sbjct: 69  LINLLND-KFNNNDKFSLQHGDILSVNLD---SINKKITKVIANIPYNITGPILDIFIGR 124

Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   +E +  L QK+V +RI +++ SP+ G LS+     +K   + D+ P  F P 
Sbjct: 125 LGIIRNCNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKKICDVPPSSFSPP 184

Query: 199 PKVTSTVIHFIPHLNP---IPCCLES-LKKITQEAFGKRRKTLRQSLKR-LGGE---NLL 250
           PKV S+++ F P +N    +   LE  + K+ + +F  RRK LR +L   L  E    L 
Sbjct: 185 PKVFSSLVVFEP-INDNLRLDISLEKYIDKLLRISFNSRRKMLRNTLNSILSNEEMNELS 243

Query: 251 HQAGIETNLRAENLSIEDFCRIT 273
             + +   LR +++SI  + ++ 
Sbjct: 244 ESSKVCFKLRPQDISINQWIKLA 266


>gi|48477458|ref|YP_023164.1| dimethyladenosine transferase [Picrophilus torridus DSM 9790]
 gi|48430106|gb|AAT42971.1| dimethyladenosine transferase [Picrophilus torridus DSM 9790]
          Length = 239

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 117/248 (47%), Gaps = 28/248 (11%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +KY GQ FL +LNI K          G  V+EIG G G LT +++      + V+E D +
Sbjct: 5   RKY-GQVFLKNLNIAKIEVNLLNLSPGERVLEIGPGHGILTSIIMEKNV-NLTVVEPDHR 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           F+    +I  + P  L  I++  L +      N  +  +II N+PYNI ++++F     D
Sbjct: 63  FY---NEIILRFPG-LNAIKNSFLDL------NPGAYDKIIGNIPYNISSQIIFKLYDFD 112

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                ++   L+ Q+E  ER+ A   + +Y RLS  +  R     + D+S   F+P P+V
Sbjct: 113 -----FKLALLMVQREFAERLVASPGNKNYSRLSASSKLRFDIKKVMDVSRKNFYPVPEV 167

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S++I    +   IPC  + + K+   AF  +RK +    K   G     + G       
Sbjct: 168 DSSIIIIKKNNKKIPCNPDDIIKM---AFSMKRKKISSIFKNYDGPLKYKRPG------- 217

Query: 262 ENLSIEDF 269
            +LS EDF
Sbjct: 218 -DLSPEDF 224


>gi|302543001|ref|ZP_07295343.1| dimethyladenosine transferase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460619|gb|EFL23712.1| dimethyladenosine transferase [Streptomyces himastatinicus ATCC
           53653]
          Length = 174

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           +P  ++ANLPYN+   +L N ++     P  E   ++ Q EV +R+ A   S  YG  SV
Sbjct: 10  APTALVANLPYNVAVPVLLNMLARF---PTIERTLVMVQSEVADRLAAPPGSKVYGVPSV 66

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRR 234
              W         I  +VF+P+P V S ++  +    P+      E +  +   AF +RR
Sbjct: 67  KAAWYAHVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPLTTTASREEVFAVVDAAFAQRR 126

Query: 235 KTLRQSLK-----RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           KTLR +L          E  L  AGI    R E+L++EDF  I  
Sbjct: 127 KTLRAALSGWAGSAPAAEAALTAAGISPQARGESLTVEDFAAIAE 171


>gi|309792566|ref|ZP_07687028.1| dimethyladenosine transferase [Oscillochloris trichoides DG6]
 gi|308225380|gb|EFO79146.1| dimethyladenosine transferase [Oscillochloris trichoides DG6]
          Length = 285

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 130/286 (45%), Gaps = 28/286 (9%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             ++  L    + P + MGQNFL+D   L  I +++       V+E+G G G LT  L+ 
Sbjct: 9   QRVRAALRTLDLRPTRGMGQNFLIDQLALDTIVQAAELTPDDLVVEVGPGLGVLTWELVR 68

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLP 126
           +   +V+ +E D++    L +  +  P  L IIQ D L+        +++ P +++ANLP
Sbjct: 69  VAR-QVVAVELDRRLAARLHEEFATAP--LRIIQADVLRTPPAAILDDLAPPYKLVANLP 125

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW---RTK 183
           Y I   +L +++     P   + + +L Q EV ERI AQ      G LSVL       T+
Sbjct: 126 YAITAPVLRHFLEGQPPP---DVMVVLVQWEVAERICAQP-----GDLSVLAHAVQIYTQ 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTL---- 237
             ++  +    F P+P V S ++     P L      + +L +I +  F + RK L    
Sbjct: 178 PEIIARVPASSFHPAPAVDSAILRMRRRPQLAVAVDDVAALFRIIKAGFLQPRKQLGNAL 237

Query: 238 -------RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                    SL R      LH A I+   RAE L++ ++  I   L
Sbjct: 238 PGGLAAIGSSLPRDEVVAALHSANIDPKRRAETLTLHEWATIYQAL 283


>gi|169625150|ref|XP_001805979.1| hypothetical protein SNOG_15844 [Phaeosphaeria nodorum SN15]
 gi|111055562|gb|EAT76682.1| hypothetical protein SNOG_15844 [Phaeosphaeria nodorum SN15]
          Length = 378

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 117/280 (41%), Gaps = 23/280 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K  S K   +H      K +GQ+ L +  +   I + +       V+E+G G GNLT ++
Sbjct: 19  KPTSAKASAAHSIFKMDKDLGQHILKNPGVASAIVQKAFLKQSDHVLEVGPGTGNLTVLI 78

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+ V  +E D +    L       P   RL+++  D +K +   F         I+
Sbjct: 79  LK-AAKAVTAVEMDPRMAAELTKRVQGTPEAKRLKVMLGDVIKTELPHF------DVCIS 131

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N PY I + L+F  +S  + P    S  L+FQ+E   R+ A+     Y RLSV      K
Sbjct: 132 NTPYQISSPLVFKLLSLPSPP---RSCILMFQREFAMRLFAKPGEKLYSRLSVNVQMWAK 188

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            + +  +  + F P P V S V+   P         E    + + AF ++ +TLR S   
Sbjct: 189 VSHIMKVGRNNFNPPPLVESNVVRIEPKFPRPQIAYEEWDGLLRIAFVRKNRTLRAS--- 245

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                 L  A +   L A N  +  FC   NI  D+  + 
Sbjct: 246 -----FLGTAAV-VELLASNYRL--FCAQNNIELDDSPVG 277


>gi|4572637|emb|CAA92585.1| dimethylase [Schizosaccharomyces pombe]
          Length = 315

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 12/222 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  + + I + +      TV+E+G G GNLT  +L   ARKVI +E D + 
Sbjct: 26  KDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLE-KARKVIAVEMDPRM 84

Query: 83  FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +       P   +L+++  D +K D   +F++      ++N PY I + L+F  +  
Sbjct: 85  AAEITKRVQGTPKEKKLQVVLGDVIKTDLP-YFDVC-----VSNTPYQISSPLVFKLLQQ 138

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              P       L+FQ+E   R+ A+   P Y RL            +  +  + F P P 
Sbjct: 139 RPAP---RGAILMFQREFALRLVARPGDPLYCRLPANVQMWAHVKHIMKVGKNNFRPPPL 195

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           V S+V+   P   P P   E    + +  F ++ KT+    K
Sbjct: 196 VESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFK 237


>gi|305663450|ref|YP_003859738.1| ribosomal RNA adenine methylase transferase [Ignisphaera aggregans
           DSM 17230]
 gi|304378019|gb|ADM27858.1| ribosomal RNA adenine methylase transferase [Ignisphaera aggregans
           DSM 17230]
          Length = 288

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 30/241 (12%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI----TVIEIGAGPGNLTQMLLTLG 69
           L  Y I  KK + Q  LL+   L+KIA     L  I    +VIEIG+GPG LT  +    
Sbjct: 20  LRVYGIKLKKRLSQVILLNEKTLEKIARMLKELSIIHRFSSVIEIGSGPGTLTLYVAKEC 79

Query: 70  AR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
               +I IE D++F  IL++I     N ++II  DA+++      N++     I NLPY+
Sbjct: 80  TNLYIIAIEIDKRFSAILREIQEYFWN-VDIIIGDAIQLIDVIRSNVA-----IGNLPYH 133

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + +L             +   +  QK+VG +I ++  S  YG++S+L        ++F
Sbjct: 134 ITSDILIEI------AKHIDIALITVQKDVGMKIISKPGSKSYGKISILL------QLLF 181

Query: 189 DIS-----PHVFF-PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           DI      P  FF P PKV S+++  +         +E ++++T+  F  RRK + ++LK
Sbjct: 182 DIKYVGGIPSKFFRPKPKVDSSILLLVRK-RIYDKTIERIEEMTKCLFSYRRKHVYKALK 240

Query: 243 R 243
           R
Sbjct: 241 R 241


>gi|254525470|ref|ZP_05137522.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9202]
 gi|221536894|gb|EEE39347.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9202]
          Length = 274

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 134/262 (51%), Gaps = 14/262 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL    +K+  +E D  
Sbjct: 9   KKRFGQHWLVNKIILEKIKEIAVLNENDFILEIGPGKGALTAKLLDSKIKKLHAVELDND 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWIS- 139
              +L D  + +  +  +   D L V+ +   +I+  I ++IAN+PYNI   +L  +I  
Sbjct: 69  LINLLNDKFNNNA-KFSLQHGDILSVNLD---SINKKITKVIANIPYNITGPILDIFIGR 124

Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   +E +  L QK+V +RI +++ SP+ G LS+     +K   + D+ P  F P 
Sbjct: 125 LGIIRNCNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKKICDVPPSSFSPP 184

Query: 199 PKVTSTVIHFIPHLN--PIPCCLES-LKKITQEAFGKRRKTLRQSLKR-LGGE---NLLH 251
           PKV S+++ F P  +   +   LE  + K+ + +F  RRK LR SL   L  E    L  
Sbjct: 185 PKVFSSLVVFEPIKDNLRLDISLEKYIDKLLRISFNSRRKMLRNSLNSILSNEEINELSE 244

Query: 252 QAGIETNLRAENLSIEDFCRIT 273
            + +   LR +++SI  + ++ 
Sbjct: 245 SSKVCFKLRPQDISINQWIKLA 266


>gi|84996089|ref|XP_952766.1| rDNA dimethyladenosine transferase [Theileria annulata strain
           Ankara]
 gi|65303763|emb|CAI76140.1| rDNA dimethyladenosine transferase, putative [Theileria annulata]
          Length = 569

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 101/235 (42%), Gaps = 56/235 (23%)

Query: 26  GQNFLLDLNILKKIAES-----SGSLDGITVIEIGAGPGNLTQMLL-------------- 66
           G NF+ DLN++ K+  S       S DG  VIE+G G G+LT +L               
Sbjct: 138 GGNFITDLNLMYKMCNSLQHYSEDSGDGSQVIELGCGIGSLTHILYKKYKNMTGTVLDFY 197

Query: 67  ----------------------------TLGARKVIVIEKDQQFFPI----LKDISSQHP 94
                                       TL   ++  + +  +   I    +  +S   P
Sbjct: 198 NYIAIRPKGTSNYTAIHFKYLVSSLSRSTLCNHRISSLSRSTKRIEIDSRAVSQLSRTLP 257

Query: 95  NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           N L II  D L++D+++  N I   + II NLP+ I +++L   +    +  + +   + 
Sbjct: 258 N-LNIINQDVLQMDYKELSNRIGKKLWIIGNLPFYITSQILMCLLD---YRKYIDRAVIT 313

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
            Q EV ER+ A   S  Y  LSVLT   T   ++F +S +VF+P PKV S  IH 
Sbjct: 314 AQWEVAERLVAPVGSKQYSILSVLTQMFTTPKILFKLSNNVFYPKPKVQSACIHL 368


>gi|296128713|ref|YP_003635963.1| dimethyladenosine transferase [Cellulomonas flavigena DSM 20109]
 gi|296020528|gb|ADG73764.1| dimethyladenosine transferase [Cellulomonas flavigena DSM 20109]
          Length = 319

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 125/301 (41%), Gaps = 42/301 (13%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+LD   ++KI   +  + G  V+E+G G G+LT  LL   
Sbjct: 12  IRALAERAGVRPTKTLGQNFVLDAGTVRKIVRQADVVAGERVVEVGPGLGSLTLGLLEAD 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQH-------PN--------------------RLEIIQD 102
              V+ +E D     +L    + H       P+                    RL ++  
Sbjct: 72  V-DVVAVEIDPVLAALLPQTVAAHVPGLAVDPHAGTENTDARTVVLRDTAGRARLTVVTQ 130

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGER 161
           DAL V          P  ++ANLPYN+   +L  ++   DT     E   ++ Q EV +R
Sbjct: 131 DALTV---TALPGPPPTALVANLPYNVSVPVLLTFLERFDT----LERGLVMVQAEVADR 183

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LE 220
           + A   S  YG  S    W   A     +   VF+P+P V S ++      +P      +
Sbjct: 184 LAAPPGSRTYGVPSAKVAWYASARRTATVGRAVFWPAPHVDSALVRLDRRAHPAAGVPRQ 243

Query: 221 SLKKITQEAFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
            +  +   AF +RRK LR      +      E+ +  AG++  +R E + +  F RI   
Sbjct: 244 EVFAVVDAAFAQRRKMLRSALAGLAGSSAAAEDAVRAAGLDPQVRGEQVDVVGFARIAEA 303

Query: 276 L 276
           L
Sbjct: 304 L 304


>gi|312221933|emb|CBY01873.1| similar to dimethyladenosine transferase dimethyltransferase
           [Leptosphaeria maculans]
          Length = 379

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 25/263 (9%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ+ L +  +   I + +       V+E+G G GNLT ++L   A+ V  +E D + 
Sbjct: 36  KDLGQHILKNPGVASAIVQKAYLKQSDHVLEVGPGTGNLTVLILK-AAKAVTAVEMDPRM 94

Query: 83  FPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L  +   +    RL+++  D +K +   F         I+N PY I + L+F  +S 
Sbjct: 95  AAELTKRVQGTAEAKRLKVMLGDVIKTELPHF------DVCISNTPYQISSPLVFKLLSL 148

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
            + P    S  L+FQ+E   R+ A+     Y RLSV      K + +  +  + F P P+
Sbjct: 149 PSPP---RSCILMFQREFAMRLFAKPGEKLYSRLSVNVQMWAKVSHIMKVGRNNFNPPPQ 205

Query: 201 VTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S V+   P  +P P    +    + + AF ++ +TLR S         L  A +   L
Sbjct: 206 VESNVVRIEPK-HPRPQIAYDEWDGLLRIAFVRKNRTLRAS--------FLGTAAV-VEL 255

Query: 260 RAENLSIEDFCRITNILTDNQDI 282
            A N  +  FC   +IL D+  I
Sbjct: 256 LASNYRL--FCAQNDILLDDSPI 276


>gi|302914906|ref|XP_003051264.1| hypothetical protein NECHADRAFT_41763 [Nectria haematococca mpVI
           77-13-4]
 gi|256732202|gb|EEU45551.1| hypothetical protein NECHADRAFT_41763 [Nectria haematococca mpVI
           77-13-4]
          Length = 332

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 119/259 (45%), Gaps = 25/259 (9%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            GQ+ L +  +   I E +      TV+E+G G GNLT  +L   A+K I +E D +   
Sbjct: 43  FGQHILKNPGVSDAIVEKAFLKPTDTVLEVGPGTGNLTVRILER-AKKCICVEVDPRMAA 101

Query: 85  -ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            + K +      R LE++  D +K +  +F         I+N PY I + L+F  +S   
Sbjct: 102 EVTKRVQGTPEQRKLEVLLGDVIKTELPQF------DVCISNTPYQISSPLVFKLLSLPN 155

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            PP   +  L+FQ+E   R+TA+     Y RLSV   +  K T +  +  + F P P+V 
Sbjct: 156 -PP--RTSVLMFQREFALRLTARPGDALYCRLSVNAQFWAKITHIMKVGKNNFRPPPQVE 212

Query: 203 STVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           S+V+   P    +      +    + +  F ++ KTLR S   LG + +L  A +E N R
Sbjct: 213 SSVVRIEPKTGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTKEVL--AMVERNYR 268

Query: 261 AENLSIEDFCRITNILTDN 279
                   +C +  +  D+
Sbjct: 269 T-------WCAMNGVPVDD 280


>gi|156087991|ref|XP_001611402.1| dimethyladenosine transferase [Babesia bovis T2Bo]
 gi|154798656|gb|EDO07834.1| dimethyladenosine transferase, putative [Babesia bovis]
          Length = 246

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 97  LEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           L++I DD L+VD++         + II NLP+ I +++LF  +    +    ++  +  Q
Sbjct: 21  LDVIHDDVLQVDYDAVSKAKGCKLWIIGNLPFYITSQILFCLVD---YKRVIDTAVVTAQ 77

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLN 213
            EV +RI A+ N   Y  LSV+     K ++ F I  + F+P PKV S VI   F    N
Sbjct: 78  WEVAQRIVARPNQFEYSILSVVLQLYAKPSLCFKIPNYAFYPVPKVDSGVIRLEFKNKTN 137

Query: 214 PIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           P  C    LK+I +++F +RRK L+ SL+
Sbjct: 138 P-ECAPLVLKRILRDSFNQRRKMLKTSLR 165


>gi|297743975|emb|CBI36945.3| unnamed protein product [Vitis vinifera]
          Length = 284

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 16  HYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           HY+  +   K  GQ+ L +  ++  I E SG      ++EIG G GNLT+ LL  G + V
Sbjct: 20  HYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KSV 78

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I +E D +    L+      P  NRL++IQ D L+ D   +F+I      +AN+PY I +
Sbjct: 79  IAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLP-YFDIC-----VANIPYQISS 132

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            L F  ++     P +    ++FQ+E   R+ AQ     Y RLSV
Sbjct: 133 PLTFKLLAHR---PVFRCAVIMFQREFAMRLVAQPGDNLYCRLSV 174


>gi|189192010|ref|XP_001932344.1| dimethyladenosine transferase dimethyltransferase [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187973950|gb|EDU41449.1| dimethyladenosine transferase dimethyltransferase [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 380

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 118/274 (43%), Gaps = 25/274 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S K   +H      K +GQ+ L +  +   I + +       V+E+G G GNLT ++L  
Sbjct: 24  SAKASAAHSIFKMDKDLGQHILKNPGVATAIVQKAHLKQSDHVLEVGPGTGNLTVLILK- 82

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            A++V  +E D +    L       P   RL I   D +K +  +F         I+N P
Sbjct: 83  AAKQVTAVEMDPRMAAELTKRVQGSPEEKRLTIRLGDVIKAELPRF------DVCISNTP 136

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I + L+F  ++    P       L+FQ+E   R+ A+     Y RLSV     +K + 
Sbjct: 137 YQISSPLVFKLLALQHPP---RCCILMFQREFAMRLFARPGEKLYSRLSVNVQMWSKVSH 193

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           +  +  + F P P+V S V+   P  NP P    E    + +  F ++ +TLR S   LG
Sbjct: 194 VMKVGRNNFNPPPQVESNVVRIEPK-NPRPQIAYEEWDGLLRICFVRKNRTLRASF--LG 250

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              +L        L A N  +  FC   +I  D+
Sbjct: 251 TAAVLE-------LLASNYRL--FCAQNDIPVDD 275


>gi|195493555|ref|XP_002094468.1| GE21840 [Drosophila yakuba]
 gi|194180569|gb|EDW94180.1| GE21840 [Drosophila yakuba]
          Length = 207

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 18/182 (9%)

Query: 114 NISSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNS 168
           + S  I +I NLP+ I TRLL NW+         +      +TL FQKEV +RI A    
Sbjct: 7   DTSQRIHLIGNLPFAISTRLLINWLEDLSCRRGAFRRIDTCMTLTFQKEVADRICAPVGG 66

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP---IPCCLESLKKI 225
               RLSV++   T+  M F I    F P P+V   V+  IP   P   +P  L  ++++
Sbjct: 67  EQRCRLSVMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFPL--VERV 124

Query: 226 TQEAFGKRRKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            +  F  R+K  R+    L          + L  +A ++  LR+  L++E   R+  + +
Sbjct: 125 VRHIFSMRQKYCRRGFGTLLPPEDREDVTQKLFQRAEVQDTLRSFELTVEQCLRLAEVYS 184

Query: 278 DN 279
           ++
Sbjct: 185 EH 186


>gi|330912552|ref|XP_003295983.1| hypothetical protein PTT_04321 [Pyrenophora teres f. teres 0-1]
 gi|311332221|gb|EFQ95920.1| hypothetical protein PTT_04321 [Pyrenophora teres f. teres 0-1]
          Length = 380

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 118/274 (43%), Gaps = 25/274 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S K   +H      K +GQ+ L +  +   I + +       V+E+G G GNLT ++L  
Sbjct: 24  SAKASAAHSIFKMDKDLGQHILKNPGVATAIVQKAHLKQSDHVLEVGPGTGNLTVLILK- 82

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            A++V  +E D +    L       P   RL I   D +K +  +F         I+N P
Sbjct: 83  AAKQVTAVEMDPRMAAELTKRVQGSPEEKRLTIRLGDVIKAELPRF------DVCISNTP 136

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I + L+F  ++    P       L+FQ+E   R+ A+     Y RLSV     +K + 
Sbjct: 137 YQISSPLVFKLLALQHPP---RCCILMFQREFAMRLFARPGEKLYSRLSVNVQMWSKVSH 193

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           +  +  + F P P+V S V+   P  NP P    E    + +  F ++ +TLR S   LG
Sbjct: 194 VMKVGRNNFNPPPQVESNVVRIEPK-NPRPQIAYEEWDGLLRICFVRKNRTLRASF--LG 250

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              +L        L A N  +  FC   +I  D+
Sbjct: 251 TAAVLE-------LLASNYRL--FCAQNDIPVDD 275


>gi|302682452|ref|XP_003030907.1| hypothetical protein SCHCODRAFT_56433 [Schizophyllum commune H4-8]
 gi|300104599|gb|EFI96004.1| hypothetical protein SCHCODRAFT_56433 [Schizophyllum commune H4-8]
          Length = 329

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 12/229 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I   +  GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+ V  +E 
Sbjct: 36  IFKTERFGQHILNNPLVAQGIVDKANLKPTDNVLEVGPGTGNLTVRILD-KAKHVTAVEM 94

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +L+II  D +K D   +F++      I+N PY I + L+F 
Sbjct: 95  DPRMAAELTKRVQGKPEQRKLDIIIGDFVKADLP-YFDVC-----ISNTPYQISSPLVFR 148

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S    P       L+FQ+E   R+ A+  +  + RLS       K   +  ++   F 
Sbjct: 149 LLSHRPLP---RVCILMFQREFALRLVARPGTEFWSRLSANVQLYAKVDHVMKVAKSCFR 205

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           P P V S+V+  +P   P P   E    +T+  F +  K +  + +  G
Sbjct: 206 PPPMVESSVVRIVPLDPPPPVRFEEFDGLTRIIFARPNKVVHANFQARG 254


>gi|118388069|ref|XP_001027135.1| dimethyladenosine transferase family protein [Tetrahymena
           thermophila]
 gi|89308905|gb|EAS06893.1| dimethyladenosine transferase family protein [Tetrahymena
           thermophila SB210]
          Length = 345

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 90/194 (46%), Gaps = 31/194 (15%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            ++ L++  +L  I E S       V+EIG G GNLT +LL   A+KVI +E D +    
Sbjct: 14  NKHILVNPQMLHSIVEKSAIRPTDIVLEIGPGTGNLTALLLE-KAKKVIAVEIDPRMVAE 72

Query: 86  LKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L      SQH ++ E+IQ DA+  +F  FF++      +AN PY I + L+F  +S    
Sbjct: 73  LNKRFKYSQHAHKFELIQGDAISTEFP-FFDVC-----VANTPYQISSPLVFKLLSHR-- 124

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P +    L+FQ                  LSV     +K   +  +  + F P PKV S
Sbjct: 125 -PLFRHAVLMFQ------------------LSVNVQLLSKCDHLIKVGKNNFKPPPKVES 165

Query: 204 TVIHFIPHLNPIPC 217
           +VI   P  NP P 
Sbjct: 166 SVIRIEPK-NPAPV 178


>gi|70987085|ref|XP_749024.1| dimethyladenosine transferase [Aspergillus fumigatus Af293]
 gi|66846654|gb|EAL86986.1| dimethyladenosine transferase [Aspergillus fumigatus Af293]
 gi|159123206|gb|EDP48326.1| dimethyladenosine transferase [Aspergillus fumigatus A1163]
          Length = 392

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 11/217 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I   I + +      TV+E+G G G LT  +L   A+KVI +E D +   
Sbjct: 38  IGQHILKNPTIADAIVDKANVQPSQTVLEVGPGTGILTTRILE-KAKKVIAVELDPRMAA 96

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141
            +       P   +L++I  D +K D  K      P +I I+N PY I + L+F  +S  
Sbjct: 97  EVTKTVQGTPAEKKLQVILGDFVKTDLSKL----PPFQICISNTPYQISSPLIFKLLSMP 152

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P   ++  L+ Q+E   R+ A+     Y RLSV   + ++ + +  +  + F P P+V
Sbjct: 153 NPP---KTCILMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHIMKVGKNNFRPPPQV 209

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            S+V+   P  +      +    + +  F ++ KTLR
Sbjct: 210 ESSVVRIEPKADRPNISWDEWDGMLRICFVRKNKTLR 246


>gi|325973708|ref|YP_004250772.1| dimethyladenosine transferase [Mycoplasma suis str. Illinois]
 gi|323652310|gb|ADX98392.1| dimethyladenosine transferase [Mycoplasma suis str. Illinois]
          Length = 259

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 13/249 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+ + Q FL + NI K+IA +  S     ++EIG G G +TQ +  L  +  + +E D  
Sbjct: 4   KRELSQVFLRNKNIQKRIANAINSSGYKFLLEIGPGCGQITQYI-ELEEKVYLGVEVDS- 61

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              +   ++S+      I+  D L +  E  + FN    + +  N+PY+I T++L  ++ 
Sbjct: 62  --SLCSHLTSKFTTA-NILNKDFLLLQEEDIQLFN-EQKVLLFGNIPYSISTKILLKFLY 117

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            + +    E   L+ QKE  E I+A+ N+  Y  L+V        + +F+I+   F+P P
Sbjct: 118 INHF----EESFLMIQKEFFESISAKCNTKQYSSLAVFLQSFCDISKLFEINRLNFYPKP 173

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           KV S               L+      ++ F   RK L  +L+++  EN+L +   + NL
Sbjct: 174 KVDSIFFSIKKKEKYSEIFLKEYFDFIKKCFFSPRKILWNNLRKIYEENILEELFYKNNL 233

Query: 260 RAENLSIED 268
             +N+ I++
Sbjct: 234 -LKNIRIQE 241


>gi|325990151|ref|YP_004249850.1| ribosomal RNA small subunit methyltransferase A [Mycoplasma suis
           KI3806]
 gi|323575236|emb|CBZ40901.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma suis]
          Length = 262

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 13/252 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  K+ + Q FL + NI K+IA +  S     ++EIG G G +TQ +  L  +  + +E 
Sbjct: 4   IKQKRELSQVFLRNKNIQKRIANAINSSGYKFLLEIGPGCGQITQYI-ELEEKVYLGVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIRIIANLPYNIGTRLLFN 136
           D     +   ++S+      I+  D L +  E  + FN    + +  N+PY+I T++L  
Sbjct: 63  DS---SLCSHLTSKFTTA-NILNKDFLLLQEEDIQLFN-EQKVLLFGNIPYSISTKILLK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           ++  +    F ES  L+ QKE  E I+A+ N+  Y  L+V        + +F+I+   F+
Sbjct: 118 FLYIN---HFEESF-LMIQKEFFESISAKCNTKQYSSLAVFLQSFCDISKLFEINRLNFY 173

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P PKV S               L+      ++ F   RK L  +L+++  EN+L +   +
Sbjct: 174 PKPKVDSIFFSIKKKEKHSEIFLKEYFDFIKKCFFSPRKILWNNLRKIYEENILEELFYK 233

Query: 257 TNLRAENLSIED 268
            NL  +N+ I++
Sbjct: 234 NNL-LKNIRIQE 244


>gi|119482754|ref|XP_001261405.1| dimethyladenosine transferase [Neosartorya fischeri NRRL 181]
 gi|119409560|gb|EAW19508.1| dimethyladenosine transferase [Neosartorya fischeri NRRL 181]
          Length = 393

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 11/217 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I   I + +      TV+E+G G G LT  +L   A+KVI +E D +   
Sbjct: 39  IGQHILKNPTIADAIVDKANVQPSQTVLEVGPGTGILTTRILE-KAKKVIAVELDPRMAA 97

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISAD 141
            +       P   +L++I  D +K D  K      P +I I+N PY I + L+F  +S  
Sbjct: 98  EVTKTVQGTPAEKKLQVILGDFVKTDLSKL----PPFQICISNTPYQISSPLIFKLLSMP 153

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P   ++  L+ Q+E   R+ A+     Y RLSV   + ++ + +  +  + F P P+V
Sbjct: 154 NPP---KTCILMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHVMKVGKNNFRPPPQV 210

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            S+V+   P  +      +    + +  F ++ KTLR
Sbjct: 211 ESSVVRIEPKADRPNISWDEWDGMLRICFVRKNKTLR 247


>gi|302348251|ref|YP_003815889.1| dimethyladenosine transferase [Acidilobus saccharovorans 345-15]
 gi|302328663|gb|ADL18858.1| dimethyladenosine transferase [Acidilobus saccharovorans 345-15]
          Length = 250

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 123/254 (48%), Gaps = 16/254 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ FL++ + +    E     +G+ V+E+G G G LT  +  + AR+V+ +E D++   
Sbjct: 7   LGQRFLVNKDGVSLFLEGLSGFEGLDVLEVGPGEGQLTVSIANV-ARRVLAVEFDRE--- 62

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +   + ++ P  + ++  D  +          SP+ +++N P+ + + ++ N    +   
Sbjct: 63  LAARLVARVPYNVSVVVGDGARYALIA----RSPV-LVSNTPFYLSSSIITNAARNNN-- 115

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF-PSPKVTS 203
              E + L  Q EV +R+TA+  S  YGRLSV++    + T +  + P  +F P PKV +
Sbjct: 116 --LELMVLGLQLEVAKRVTARPGSELYGRLSVISQAYFR-TQIIGVMPSSWFKPRPKVDA 172

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            V+  +      P   E+L+K+T+  F  R K + ++  R  G        + ++ R  +
Sbjct: 173 AVVRMVRIRRWDPTG-EALEKVTRCLFSYRNKLVTKAALRCLGSVPEDFKSLPSSTRVRD 231

Query: 264 LSIEDFCRITNILT 277
           L+ E    +   L+
Sbjct: 232 LAPEQLIGVAKWLS 245


>gi|328785046|ref|XP_624425.2| PREDICTED: probable dimethyladenosine transferase-like [Apis
           mellifera]
          Length = 280

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 16/191 (8%)

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           + + ++L+I+  D LK D   FF++      +AN+PY I + L+F  +      P +   
Sbjct: 68  TAYQSKLQIMIGDVLKTDLP-FFDLC-----VANIPYQISSPLVFKLL---LHRPMFRCA 118

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
            L+FQ+E  ER+ A+     Y RLS+ T    +  ++  +  + F P PKV S V+   P
Sbjct: 119 ILMFQREFAERLVAKPGDKLYCRLSINTQLLARVDLLMKVGKNNFRPPPKVESNVVRIEP 178

Query: 211 HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLS 265
              P P   +    +T+ AF ++ KTL  + K+     +L +       +   +  E  +
Sbjct: 179 RNPPPPINYQEWDGLTRIAFVRKNKTLSAAFKQTTVLTMLEKNYKLHCSLNNKIITEGFN 238

Query: 266 IEDFCRITNIL 276
           I+D   I++IL
Sbjct: 239 IKDM--ISDIL 247


>gi|47157009|gb|AAT12376.1| putative dimethyladenosine transferase-like protein [Antonospora
           locustae]
          Length = 219

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 29/216 (13%)

Query: 72  KVIVIEKDQQFFP-ILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           K++  EKD +    ++K +S++H  ++ E+   DAL+  F  F         I+N+PY I
Sbjct: 1   KLVCYEKDTRLAAELVKKVSARHLSHKFELNVGDALRATFPPF------DMCISNIPYQI 54

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF  +  D     ++   ++FQ+E  +R+ A+     Y RLSV      K   + +
Sbjct: 55  SSPLLFKLLQED-----FKCAYIMFQREFAQRLIARPGCSEYSRLSVAVQLLAKVHNVMN 109

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR--------RKTLRQSL 241
           +S + F P P V S+V+   P +   P  +E   ++ +  F ++        ++T+ Q +
Sbjct: 110 VSRNSFVPPPMVDSSVVRIEPRVPRPPINIEEFNRLLKICFLRKNKRLSGIFKRTVIQDM 169

Query: 242 KRLGGENLLHQ-----AGIETNL---RAENLSIEDF 269
           +++     L +      GI   L   RA  + IEDF
Sbjct: 170 QKVNKAYTLQEIEKKTTGILRKLGADRAAKMDIEDF 205


>gi|315301058|ref|ZP_07872369.1| dimethyladenosine transferase [Listeria ivanovii FSL F6-596]
 gi|313630573|gb|EFR98395.1| dimethyladenosine transferase [Listeria ivanovii FSL F6-596]
          Length = 128

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 7/117 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A++
Sbjct: 14  ILKKYGFLFKKSLGQNFLIDSNILTRITDTAEINKETNVIEIGPGIGALTEQLAK-AAKE 72

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFNISSPIRIIAN 124
           V+  E DQ+  PIL D  S + N ++++  D LK + E     +F +   P++I+AN
Sbjct: 73  VVAFEIDQRLLPILDDTLSAYDN-IKVVHGDVLKANVEEVISTQFTHPELPLKIVAN 128


>gi|289670944|ref|ZP_06492019.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 152

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72
           S +    KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL    RK  
Sbjct: 3   SSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL----RKHG 58

Query: 73  -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            + VIE D+     L + ++     L II  D L VDF    +  +PIR++ NLPYNI +
Sbjct: 59  ALTVIEFDRDLIAPLTEAAAP-IGALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISS 116

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
            +LF+ +           +  + QKEV +R+ A   SP
Sbjct: 117 PILFHALDHAAA---VADMHFMLQKEVVDRMAAGPGSP 151


>gi|148686526|gb|EDL18473.1| RIKEN cDNA 1500031M22, isoform CRA_a [Mus musculus]
 gi|148686527|gb|EDL18474.1| RIKEN cDNA 1500031M22, isoform CRA_a [Mus musculus]
          Length = 236

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 16/188 (8%)

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           ++L+++  D LK D   FF+       +ANLPY I +  +F  +      PF+    L+F
Sbjct: 28  SKLQVLVGDVLKSDLP-FFDAC-----VANLPYQISSPFVFKLL---LHRPFFRCAILMF 78

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           Q+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV S+V+   P   P
Sbjct: 79  QREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPP 138

Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIEDF 269
            P   +    + +  F ++ KTL  + K    + LL +       ++  +  E+ SI D 
Sbjct: 139 PPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVIPEDFSIAD- 197

Query: 270 CRITNILT 277
            +I  ILT
Sbjct: 198 -KIQQILT 204


>gi|320583126|gb|EFW97342.1| dimethyladenosine transferase [Pichia angusta DL-1]
          Length = 319

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 11/220 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I + I + +       V+EIG G GNLT  +L   ARKVI  E D +   
Sbjct: 30  LGQHILKNPLIAQGIVDKAEIRPSDVVLEIGPGTGNLTVRILE-KARKVIASEVDPKMAA 88

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEII  D +K++   +F++      I+N PY I + ++F  +S   
Sbjct: 89  ELTKRVQGTPYEKKLEIIMGDFMKLETLPYFDVC-----ISNTPYQISSGIVFKLLSMPR 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E    +TA+     Y RLS           +  +  + F P PKV 
Sbjct: 144 PP---RIAVLMFQREFAMNLTARPGDALYNRLSANAQMWANVKHVMKVGKNNFRPPPKVE 200

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           S+V+   P +            + +  F ++ KTL  + +
Sbjct: 201 SSVVKVEPKIPRPNLDYNEWDGLLRFCFNRKNKTLNATFR 240


>gi|297294370|ref|XP_001085304.2| PREDICTED: probable dimethyladenosine transferase [Macaca mulatta]
          Length = 284

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 18/213 (8%)

Query: 72  KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           KV+  E D +    L       P  ++L+++  D LK D   FF+       +ANLPY I
Sbjct: 51  KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQI 104

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            +  +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  
Sbjct: 105 SSPFVFKLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMK 161

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +  + F P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + L
Sbjct: 162 VGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQL 221

Query: 250 LHQ-----AGIETNLRAENLSIEDFCRITNILT 277
           L +       +   +  E+ SI D  +I  ILT
Sbjct: 222 LEKNYRIHCSVHNIIIPEDFSIAD--KIQQILT 252


>gi|289757093|ref|ZP_06516471.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289712657|gb|EFD76669.1| predicted protein [Mycobacterium tuberculosis T85]
          Length = 207

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 14/178 (7%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           +L +D E     ++P  ++ANLPYN+    L + +      P    +T++ Q EV ER+ 
Sbjct: 6   SLALDREDL--AAAPTAVVANLPYNVAVPALLHLLVEF---PSIRVVTVMVQAEVAERLA 60

Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESL 222
           A+  S  YG  SV   +  +      +SP VF+P P+V S ++    +  +P P      
Sbjct: 61  AEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFR 120

Query: 223 KKITQE---AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
           +++ +    AF +RRKT R +  +  G      N L  A I+   R E LSI+DF R+
Sbjct: 121 RRVFELVDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 178


>gi|316973725|gb|EFV57284.1| putative C2 domain protein [Trichinella spiralis]
          Length = 1392

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 118  PIRIIANLPYNIGTRLLFNWISADTW--PPFWES---LTLLFQKEVGERITAQKNSPHYG 172
            P+ +I NLP+N+ T L+  W+ A +    PF      LTL FQKEVG R+ A   + H  
Sbjct: 1171 PVHVIGNLPFNVSTYLIIKWLRAMSLHEGPFVYGRTLLTLTFQKEVGLRMLAPIFNRHRC 1230

Query: 173  RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFG 231
            RLSV+  + +     F I      PSP V   V+ F P + P IP   + ++K  +  F 
Sbjct: 1231 RLSVMCQYLSDVKRKFTIPGRACVPSPDVDVAVMQFRPKVTPVIPHHFDLVEKFCRHVFH 1290

Query: 232  KRRKTLRQS--------LKRLGGENLLHQAGIETNLRAENLSIE---DFCRI 272
             R K   +         LK+     +L  A +   L    L+IE   D C+I
Sbjct: 1291 YRNKYCIRGIETLFPDFLKKDFSHEILRFARVSPKLAPPALAIEEIRDMCKI 1342


>gi|299740974|ref|XP_001834135.2| rRNA (adenine-N6,N6-)-dimethyltransferase [Coprinopsis cinerea
           okayama7#130]
 gi|298404496|gb|EAU87730.2| rRNA (adenine-N6,N6-)-dimethyltransferase [Coprinopsis cinerea
           okayama7#130]
          Length = 318

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 12/229 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84
           GQ+ L +    +KI +++       V+E+G G GNLT  +L   A+ V  +E D +    
Sbjct: 39  GQHILKNTQTAQKIVDAANLKPTDKVLEVGPGTGNLTVKILE-KAKHVTAVEMDPRMAAE 97

Query: 85  ILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           +LK +      R LE+I  D +K +   +F +      I+N PY I + L+F  +S    
Sbjct: 98  VLKRVQGTPEQRKLEVIIGDFVKAEI-PYFEVC-----ISNTPYQISSPLVFRLLSHR-- 149

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P +    L+FQ+E   R+ A+  +  + RLS       K   +  ++ + F P P+V S
Sbjct: 150 -PLFRVAILMFQREFALRLVARPGTSLWSRLSANVQLYAKVDNIMHVNRNDFRPPPQVES 208

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           +VI  +P   P P   E    + +  F +  KT+R + +  G   +L Q
Sbjct: 209 SVIRLVPLDPPPPVKFEEFDGLNRIIFSRPNKTVRGNFQAKGVMKMLEQ 257


>gi|215445160|ref|ZP_03431912.1| dimethyladenosine transferase [Mycobacterium tuberculosis T85]
          Length = 209

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 14/178 (7%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           +L +D E     ++P  ++ANLPYN+    L + +      P    +T++ Q EV ER+ 
Sbjct: 8   SLALDREDL--AAAPTAVVANLPYNVAVPALLHLLVEF---PSIRVVTVMVQAEVAERLA 62

Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESL 222
           A+  S  YG  SV   +  +      +SP VF+P P+V S ++    +  +P P      
Sbjct: 63  AEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFR 122

Query: 223 KKITQE---AFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
           +++ +    AF +RRKT R +  +  G      N L  A I+   R E LSI+DF R+
Sbjct: 123 RRVFELVDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 180


>gi|115630|sp|P13079|CARB_STRTH RecName: Full=rRNA methyltransferase; AltName:
           Full=Carbomycin-resistance protein
 gi|99022|pir||A26512 carB protein - Streptomyces sp
 gi|153200|gb|AAC32026.1| carbomycin resistance protein [Streptomyces thermotolerans]
          Length = 299

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 17/225 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL+D   +++    +    G  V+E+GAG G +T+ L  L  R+V+  E D+ 
Sbjct: 49  RRVHGQNFLVDRETVQRFVRFADPDPGEVVLEVGAGNGAITRELARL-CRRVVAYEIDRH 107

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-ISA 140
           F   L++ +++ P R+E++  D LK    K      P  ++ N+P+   T  + +W ++A
Sbjct: 108 FADRLREATAEDP-RIEVVAGDFLKTSQPKV-----PFSVVGNIPFG-NTADIVDWCLNA 160

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                   + TL+ Q E   + T       + RL+V T    +  M   IS   F P P 
Sbjct: 161 RR----LRTTTLVTQLEYARKRTGGYR--RWSRLTVATWPEVEWRMGERISRRWFRPVPA 214

Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243
           V S V+       P+  P  +   + + +  F  +  +L  SL+R
Sbjct: 215 VDSAVLRLERRPVPLIPPGLMHDFRDLVETGFTGKGGSLDASLRR 259


>gi|154310501|ref|XP_001554582.1| hypothetical protein BC1G_07171 [Botryotinia fuckeliana B05.10]
 gi|150851502|gb|EDN26695.1| hypothetical protein BC1G_07171 [Botryotinia fuckeliana B05.10]
          Length = 214

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A+KVI +E D + 
Sbjct: 32  KDYGQHILKNPGVAEAIVKKANLKPTDTVLEVGPGTGNLTVRILE-SAKKVIAVEVDPRM 90

Query: 83  FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +       P   RLE++  D +K +    F++      I+N PY I + L+F  +S 
Sbjct: 91  AAEVTKRVQGKPEQKRLEVLLGDVIKTELP-HFDV-----CISNTPYQISSPLVFKLLSL 144

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              P       ++FQ+E   R+TA+     Y RLSV   +  K T +  +  + F P P+
Sbjct: 145 PNPP---RCSVVMFQREFALRLTARPGDSLYCRLSVNAQFFAKITPIMKVGKNNFRPPPQ 201

Query: 201 VTSTVIHFIP 210
             S V    P
Sbjct: 202 GESCVGRIEP 211


>gi|50551823|ref|XP_503386.1| YALI0E00770p [Yarrowia lipolytica]
 gi|52782774|sp|Q6C7H6|DIM1_YARLI RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49649255|emb|CAG78965.1| YALI0E00770p [Yarrowia lipolytica]
          Length = 317

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + S      TV+E+G G GNLT  +L   ARKVI +E D +   
Sbjct: 34  LGQHILKNPLVAQGIVDKSDIKPSDTVLEVGPGTGNLTVRILE-KARKVIAVEMDPRMAA 92

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K +   +F++      I+N PY I + L+F  ++   
Sbjct: 93  ELTKRVQGKPEQKKLEIMLGDCIKTELP-YFDVC-----ISNTPYQISSPLVFKLLNQPR 146

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ E   R+ A+     Y RLSV      K + +  +    F P P V 
Sbjct: 147 PP---RVSVLMFQHEFAMRLLARPGDSLYCRLSVNVQMWAKVSHVMKVGRGNFRPPPNVE 203

Query: 203 STVIHFIPHLNPIP 216
           S+V+  I   NP P
Sbjct: 204 SSVVK-IEVKNPRP 216


>gi|168702403|ref|ZP_02734680.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246]
          Length = 261

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 17/214 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L  +   + + PK  +GQNFL+DLN+L  I  ++       V+E+G G G+LT  L    
Sbjct: 26  LHRLFEAHGLSPKSKLGQNFLIDLNLLDLIVRTAELDKSDAVLEVGTGTGSLTAKLAD-P 84

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----------- 118
           A  V+ +E D+   P+ K+I     N +  +  DAL    E   ++ S            
Sbjct: 85  AGVVVTVEVDRSIQPVAKEIVGGRSN-VRFVFGDALAKKSELNPDMLSTWDAAAKEVGCT 143

Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             +++ANLPY I T L+ N +      P  E + ++ Q E+ ER+ A  N+  Y  LSVL
Sbjct: 144 RKKLVANLPYVIATPLISNLLIGH---PEIERMVVMVQWEIAERMKAVPNTKDYNALSVL 200

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
                    +  ++P  F P PKV S ++   P+
Sbjct: 201 VQSVADVETVRKVAPTNFHPRPKVDSAIVLIKPN 234


>gi|254568850|ref|XP_002491535.1| Essential 18S rRNA dimethylase (dimethyladenosine transferase)
           [Pichia pastoris GS115]
 gi|238031332|emb|CAY69255.1| Essential 18S rRNA dimethylase (dimethyladenosine transferase)
           [Pichia pastoris GS115]
 gi|328351956|emb|CCA38355.1| dimethyladenosine transferase [Pichia pastoris CBS 7435]
          Length = 328

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   ARKVI  E D +   
Sbjct: 39  LGQHILKNPLVAQGIVDKANIRPSDTVLEVGPGTGNLTMRILQ-KARKVIASEMDPRMAA 97

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +L+II  D +K D   +F+I      I+N PY I + L+F  ++   
Sbjct: 98  ELTKRVQGKPEQKKLDIILGDFIKQDLP-YFDIC-----ISNTPYQISSPLVFKLLNQPK 151

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV        T +  +  + F P P+V 
Sbjct: 152 PP---RVAILMFQREFALRLLARPGDSLYCRLSVNVQMWANVTHIMKVGRNNFRPPPQVE 208

Query: 203 STVIHFIPHLNPIP 216
           S+V+  I   NP P
Sbjct: 209 SSVVR-IEVKNPRP 221


>gi|86742643|ref|YP_483043.1| dimethyladenosine transferase [Frankia sp. CcI3]
 gi|86569505|gb|ABD13314.1| dimethyladenosine transferase [Frankia sp. CcI3]
          Length = 251

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 16/229 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHP----NRLEIIQDDA 104
           TV+EIG G G++T + L   A+ V+ +E D+     L   ++++ P     RL ++  D 
Sbjct: 12  TVLEIGPGLGSMT-LGLVEAAKAVVAVEVDRPLAAALPVTVAARLPADVAERLRVVAADG 70

Query: 105 LKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           L+V       ++++P  + ANLPYNI   LL   +      P      ++ Q EV +R+T
Sbjct: 71  LRVTLADLPADVAAPGVLAANLPYNIAVPLLLGLLERL---PSLRRGLVMVQAEVADRLT 127

Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-L 222
           A   S  YG  SV   W   A     +   VF+P P V S ++ F     P P  L + +
Sbjct: 128 APPGSRVYGAPSVKLAWYAHARPAGAVPRPVFWPQPNVDSGLVAFARRPLPGPARLRADV 187

Query: 223 KKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-----IETNLRAENLSI 266
                 AF +RRKTLR +L    G             ++   R E L I
Sbjct: 188 FAAIDAAFAQRRKTLRTALAPWAGSPAAAGDLARAAEVDPGARGETLDI 236


>gi|68467333|ref|XP_722328.1| likely dimethyladenosine transferase [Candida albicans SC5314]
 gi|68467562|ref|XP_722214.1| likely dimethyladenosine transferase [Candida albicans SC5314]
 gi|46444170|gb|EAL03447.1| likely dimethyladenosine transferase [Candida albicans SC5314]
 gi|46444295|gb|EAL03571.1| likely dimethyladenosine transferase [Candida albicans SC5314]
 gi|238878254|gb|EEQ41892.1| dimethyladenosine transferase [Candida albicans WO-1]
          Length = 326

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI +E D +   
Sbjct: 36  LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-KARKVIAVEMDPRMAA 94

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K D   +F+I      I+N PY I + L+F  ++   
Sbjct: 95  ELTKRVHGTPQEKKLEILLGDFMKTDLP-YFDIC-----ISNTPYQISSPLVFKLLNQPR 148

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E  +R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 149 PP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 205

Query: 203 STVIHFIPHLNPIP 216
           S+V+  I   NP P
Sbjct: 206 SSVVR-IEIKNPRP 218


>gi|56759186|gb|AAW27733.1| SJCHGC05919 protein [Schistosoma japonicum]
          Length = 289

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 14/170 (8%)

Query: 114 NISSP-IRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKN 167
           NI+SP + +I NLP++I T L+  W+         W     SLTL FQKEV ER+ A   
Sbjct: 58  NINSPRMFVIGNLPFSISTPLISRWLHDIAERRGIWRYGRVSLTLTFQKEVAERLAADVW 117

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKIT 226
                RLS+++        M DI    F P PKV   V+   P   P IP     ++K+ 
Sbjct: 118 DEQRSRLSIMSQAYCDVKYMKDIPGTAFVPPPKVDVGVVRLTPLKEPLIPVPYPYVEKLV 177

Query: 227 QEAFGKRRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDF 269
           ++AF  R+K + + L+ L   +       L  +AG++   +   L++ +F
Sbjct: 178 RQAFHFRQKQIIRCLETLFPSDRPELVIQLFKEAGVQPVKQCIQLTMPEF 227


>gi|241950377|ref|XP_002417911.1| 18S rRNA dimethylase, putative; S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase, putative;
           dimethyladenosine transferase, putative [Candida
           dubliniensis CD36]
 gi|223641249|emb|CAX45629.1| 18S rRNA dimethylase, putative [Candida dubliniensis CD36]
          Length = 330

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI +E D +   
Sbjct: 36  LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-KARKVIAVEMDPRMAA 94

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K D   +F+I      I+N PY I + L+F  ++   
Sbjct: 95  ELTKRVHGTPQEKKLEILLGDFMKTDLP-YFDIC-----ISNTPYQISSPLVFKLLNQPR 148

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E  +R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 149 PP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 205

Query: 203 STVIHFIPHLNPIP 216
           S+V+  I   NP P
Sbjct: 206 SSVVR-IEVKNPRP 218


>gi|296420592|ref|XP_002839853.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636059|emb|CAZ84044.1| unnamed protein product [Tuber melanosporum]
          Length = 294

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 12/154 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I   +G      V+E+G G GNLT  +L   ARKVI +E D +   
Sbjct: 41  LGQHILKNPGVAQAIVNKAGLKQSDVVLEVGPGTGNLTVKILE-QARKVIAVEMDPRMAA 99

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   R+EI+  D +K +   +F++      I+N PY I + L+F  ++   
Sbjct: 100 ELTKRVQGKPEQTRVEILLGDVIKTEL-PYFDVC-----ISNTPYQISSPLVFKLLALSP 153

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P    +  L+FQ+E   R+ AQ     Y RLSV
Sbjct: 154 AP---RTCILMFQREFAMRVVAQPGDTLYCRLSV 184


>gi|149239484|ref|XP_001525618.1| dimethyladenosine transferase [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451111|gb|EDK45367.1| dimethyladenosine transferase [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 329

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 23/264 (8%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI  E D +   
Sbjct: 36  LGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILE-QARKVIASEMDPRMAA 94

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K +   +F+I      I+N PY I + L+F  ++   
Sbjct: 95  ELTKRVHGTPQEKKLEILLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLLNQPN 148

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P PKV 
Sbjct: 149 PP---RVSILMFQREFAMRLVARPGDELYCRLSANVQMWANVTHIMKVGKNNFRPPPKVE 205

Query: 203 STVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---------Q 252
           S+V+  I   NP P         + +  F ++ KT+    K L   ++L          Q
Sbjct: 206 SSVVR-IEIKNPRPNIDFNEWDGLLRIVFVRKNKTIAAGFKSLNVIDILEKNYKTWLATQ 264

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
           AGIE       + ++D   + +++
Sbjct: 265 AGIEGLQEDATMIVDDKAGLKDVV 288


>gi|1169553|sp|P45438|ERMK_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|143195|gb|AAA22595.1| erythromycin-inducible 23S ribosomal RNA methylase [Bacillus
           licheniformis]
          Length = 287

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 36/195 (18%)

Query: 24  YMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           + GQ+ + +  ++++I + +  S+D  TV+E+GAG G LT ML +  A KV+ +E D +F
Sbjct: 21  FSGQHLMHNKKLIEEIVDRANISIDD-TVLELGAGKGALTTML-SQKAGKVLAVENDSKF 78

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGT---RLLFNW 137
             IL   ++QHPN  +II  D +K+    EKF        +++N+PY I T   ++L N 
Sbjct: 79  VAILTRKTAQHPN-TKIIHQDIMKIHLPKEKFV-------VVSNIPYAITTPIMKMLLNN 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------IS 191
            ++      ++   ++ +K   +R T++     + + S +  WR    M FD      IS
Sbjct: 131 PASG-----FQKGIIVMEKGAAKRFTSK-----FIKNSYVLAWR----MWFDIGIVREIS 176

Query: 192 PHVFFPSPKVTSTVI 206
              F P PKV S ++
Sbjct: 177 KEHFSPPPKVDSAMV 191


>gi|221091001|ref|XP_002169774.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 175

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y +  KK + QNF+LDLN+  KIA  +   D   VIE+G+GPG+L++ LL  G R +  +
Sbjct: 23  YGLRAKKQLSQNFILDLNVTDKIARKADVFD-CNVIEVGSGPGSLSRSLLNAGLRHLYAV 81

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           E D++F P L+ +       + I   D LK D  K
Sbjct: 82  EIDKRFLPSLELLQDASDGHMSIYHADILKFDMVK 116


>gi|313141396|ref|ZP_07803589.1| dimethyladenosine transferase dimethyltransferase [Helicobacter
           canadensis MIT 98-5491]
 gi|313130427|gb|EFR48044.1| dimethyladenosine transferase dimethyltransferase [Helicobacter
           canadensis MIT 98-5491]
          Length = 152

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 12/158 (7%)

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +PY I T L+   I      P  +   ++ QKEV  +  A +N   +  LSVL     +A
Sbjct: 1   MPYYIATLLVIKAIKD----PLCKGCVVMTQKEVALKFCAIQNQSDFSALSVLAQSVGEA 56

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLK 242
            M+F++ P  F P PKVTS V  F+   N IP    L  L+++ + AF   RKTL  +L 
Sbjct: 57  KMLFEVPPSAFVPQPKVTSAV--FLIEKNHIPSSDFLVKLEELLKIAFSAPRKTLFNNLS 114

Query: 243 RLGGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           ++  +      L   GI +N R   +   D+ R+  +L
Sbjct: 115 KVYSKEKIMETLETLGIVSNKRPHEIDTTDYHRLLKLL 152


>gi|302509638|ref|XP_003016779.1| hypothetical protein ARB_05072 [Arthroderma benhamiae CBS 112371]
 gi|291180349|gb|EFE36134.1| hypothetical protein ARB_05072 [Arthroderma benhamiae CBS 112371]
          Length = 364

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 26/219 (11%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A+KVI +E D +   
Sbjct: 39  IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   RLE++  D +K +      ISSP              L F  ++ + 
Sbjct: 98  ELTKRVQGKPEQKRLEVLLGDVMKTE------ISSP--------------LTFKLLATNP 137

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 138 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 194

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           S+V+  +P +       +    + + AF ++ KTLR S 
Sbjct: 195 SSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 233


>gi|302654957|ref|XP_003019274.1| hypothetical protein TRV_06678 [Trichophyton verrucosum HKI 0517]
 gi|291182988|gb|EFE38629.1| hypothetical protein TRV_06678 [Trichophyton verrucosum HKI 0517]
          Length = 364

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 26/219 (11%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A+KVI +E D +   
Sbjct: 39  IGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAA 97

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   RLE++  D +K +      ISSP              L F  ++ + 
Sbjct: 98  ELTKRVQGKPEQKRLEVLLGDVMKTE------ISSP--------------LTFKLLATNP 137

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 138 AP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVE 194

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           S+V+  +P +       +    + + AF ++ KTLR S 
Sbjct: 195 SSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 233


>gi|255728801|ref|XP_002549326.1| dimethyladenosine transferase [Candida tropicalis MYA-3404]
 gi|240133642|gb|EER33198.1| dimethyladenosine transferase [Candida tropicalis MYA-3404]
          Length = 324

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKV+ +E D +   
Sbjct: 36  LGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILE-KARKVVAVEMDPRMAA 94

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K +   +F+I      I+N PY I + L+F  ++   
Sbjct: 95  ELTKRVHGTPQEKKLEILLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLLNQPR 148

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E  +R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 149 PP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 205

Query: 203 STVIHFIPHLNPIP 216
           S+V+  I   NP P
Sbjct: 206 SSVVR-IEVKNPRP 218


>gi|242788270|ref|XP_002481185.1| dimethyladenosine transferase [Talaromyces stipitatus ATCC 10500]
 gi|218721332|gb|EED20751.1| dimethyladenosine transferase [Talaromyces stipitatus ATCC 10500]
          Length = 421

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 19/216 (8%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +L ++   +IA++        + ++G G G LT+ +L   A+    IE D +    L  +
Sbjct: 68  MLSISCKTRIAQAD------NIAQVGPGTGVLTRRILA-KAKSCTAIELDPRMAAELTKM 120

Query: 90  SSQHP--NRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
               P   +L+II  D +KVD ++   F++      I+N PY I + L+F  + A   PP
Sbjct: 121 VQGTPMQRKLKIILGDFIKVDLKEIGHFDV-----FISNTPYQISSPLVFKLL-AMPRPP 174

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
                 L+ Q+E  +R+ A+     Y RLSV   +    + +  +  + F P P+V S+V
Sbjct: 175 --RVSILMVQREFAQRLIARPGDAMYSRLSVNAQFHAICSHILKVGKNNFSPPPQVESSV 232

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           +   P  +      E L  + +  F ++ KTLR S 
Sbjct: 233 VRIEPRPDRPDISWEELDGMLRICFNRKNKTLRSSF 268


>gi|320100239|ref|YP_004175831.1| ribosomal RNA adenine methylase transferase [Desulfurococcus
           mucosus DSM 2162]
 gi|319752591|gb|ADV64349.1| ribosomal RNA adenine methylase transferase [Desulfurococcus
           mucosus DSM 2162]
          Length = 278

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 25/243 (10%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S +L+ + SH  + P++ + QNF++D  +LK    +   LD     EIG G G LT M L
Sbjct: 17  SWTLRVLQSH-GLKPRRRLSQNFIVDPALLKGFTRNVEYLD---TFEIGCGIGTLT-MSL 71

Query: 67  TLGARKVIVIEKDQQFF-PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIA 123
           +    ++I +E D +     +++I + +   + ++  DA          + +P   +++ 
Sbjct: 72  SRFVPRLICVEIDWRLLEAAVENIDAAN---VVLVNADA---------TVYTPPSKQVVG 119

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY+I + +L      +T            Q++V ERITA      YGR+++L     +
Sbjct: 120 NIPYHITSEILTGVARLNTV----TRAVFTVQRDVAERITAAPGDRRYGRITILLNALFE 175

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             +        F+P P V  ++I  +    P    +E+L+ +T+  F +RR+   + L+R
Sbjct: 176 IKVAGTYGSSSFYPEPGVEHSIIVMVRR-APFNRDVEALEALTRAVFTQRRRIALRVLER 234

Query: 244 LGG 246
           + G
Sbjct: 235 VLG 237


>gi|167042718|gb|ABZ07438.1| putative ribosomal RNA adenine dimethylase [uncultured marine
           crenarchaeote HF4000_ANIW133O4]
          Length = 233

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 23/226 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            +K +GQ+FL    I K I  S+       V+EIG G G L   L    A++V  IEKDQ
Sbjct: 3   KRKNLGQHFLKSKTIAKSIVSSANITRNDFVLEIGTGYGILIPYLCK-NAKQVFSIEKDQ 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWIS 139
                 K     + N         L +++   FN      + ++NLPY+  +R    W+ 
Sbjct: 62  NLHLSAKSNFHDYTN---------LVLEYGDGFNSDHNFSVFVSNLPYS-KSRFAIEWLL 111

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +        ++ QKE  E++++  N  H   +SVL  +  +   + ++    FFP P
Sbjct: 112 QKKFSR----AVIMVQKEFSEKLSS--NEKHMA-ISVLANYGFRIKFLMNVKKSNFFPMP 164

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           KV S VI            + ++K+I    F  RRKTL+  LK+ G
Sbjct: 165 KVDSVVILLEQKRIISKVLISTVKRI----FSYRRKTLQNILKQFG 206


>gi|126276136|ref|XP_001387199.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (18S rRNA
           dimethylase) [Scheffersomyces stipitis CBS 6054]
 gi|126213068|gb|EAZ63176.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (18S rRNA
           dimethylase) [Pichia stipitis CBS 6054]
          Length = 323

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 12/185 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +G      V+E+G G GNLT  +L   ARKV+ +E D +   
Sbjct: 36  LGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILE-QARKVVAVEMDPRMAA 94

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K D   +F++      I+N PY I + L+F  ++   
Sbjct: 95  ELTKRVHGTPQQKKLEILLGDFMKTDLP-YFDVC-----ISNTPYQISSPLVFKLLNQPR 148

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 149 PP---RVSILMFQREFALRLLARPGDGLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 205

Query: 203 STVIH 207
           S+V+ 
Sbjct: 206 SSVVR 210


>gi|85099447|ref|XP_960790.1| dimethyladenosine transferase [Neurospora crassa OR74A]
 gi|28922314|gb|EAA31554.1| dimethyladenosine transferase [Neurospora crassa OR74A]
          Length = 398

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 13/219 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I   I + +       V+E+G G GN+T   L   A+KVI IE D + 
Sbjct: 39  KDFGQHILKNPGISDAIVDKAFLKPTDVVVEVGPGTGNITVRALE-KAKKVIAIELDPRM 97

Query: 83  FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +       P   +LE+I  D +K+       +     +I+N PY I + L+F  ++ 
Sbjct: 98  GAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFKMLAM 152

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              P       L+FQ+E  +R+ A+     Y RLSV   +      +  +    F P PK
Sbjct: 153 PNPP---RVAVLMFQREFAKRLVARPGDALYSRLSVNVNFWATCKHIMKVGKQNFKPPPK 209

Query: 201 VTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTL 237
           V S V+   P +         E    + + AF ++ KTL
Sbjct: 210 VESDVVRIEPLVGSARPNIAFEEFDGLLRIAFNRKNKTL 248


>gi|307092008|gb|ADN28339.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 113

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 12/115 (10%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  I+ +I E+S  + G TV+EIG G G LTQ L+  GA KVI +E D    P L++   
Sbjct: 2   DEGIVAEIIEASAIVKGETVLEIGPGTGVLTQALVEAGA-KVIAVEADPDLIPALEE--- 57

Query: 92  QHPNRLEIIQDDALKVDFE--KFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
              +R+E+++ D L+ + +  K F      +++AN+PYNI + +L   ++ D+ P
Sbjct: 58  TFGDRIELVESDVLETNLKLPKLF------KLVANIPYNITSDVLHRSLTGDSRP 106


>gi|50420303|ref|XP_458685.1| DEHA2D05038p [Debaryomyces hansenii CBS767]
 gi|52782772|sp|Q6BSY5|DIM1_DEBHA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49654352|emb|CAG86824.1| DEHA2D05038p [Debaryomyces hansenii]
          Length = 327

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +G      V+E+G G GNLT  +L   ARKVI  E D +   
Sbjct: 36  LGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILE-QARKVIASEMDPRMAA 94

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       PN  +L+I+  D +K +   +F++      I+N PY I + L+F  ++   
Sbjct: 95  ELTKRVHGTPNQKKLDILLGDFIKTELP-YFDVC-----ISNTPYQISSPLVFKLLNQPR 148

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +S + F P P+V 
Sbjct: 149 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVSKNNFRPPPQVE 205

Query: 203 STVIH 207
           S+V+ 
Sbjct: 206 SSVVR 210


>gi|218884716|ref|YP_002429098.1| Probable dimethyladenosine transferase [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766332|gb|ACL11731.1| Probable dimethyladenosine transferase [Desulfurococcus
           kamchatkensis 1221n]
          Length = 278

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 122/242 (50%), Gaps = 26/242 (10%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +IL  + + P++ + QNF++D  +++        ++     EIG G G LT + L+    
Sbjct: 21  SILREHGLRPRRKLSQNFIVDPRLIRDFISH---VNHAETTEIGCGLGTLT-IPLSRVVP 76

Query: 72  KVIVIEKDQQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++I IE D++   I +K++++   N L I  D      F +        +++ N+PY++ 
Sbjct: 77  RLICIEIDEKLLGIAVKNLNTS--NTLFINADATKYTVFSR--------QVVGNIPYHVT 126

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL--TGWRTKATMMF 188
           + +L +   ++      E +    QK+V ER+ A+  S  YGR+++L  T +  + T ++
Sbjct: 127 SNILVSIARSNNV----ERVVFTLQKDVAERLVAKPGSKQYGRITILLNTLFNIEITGIY 182

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK-TLRQSLKRLG-G 246
              P  F+P PKV   +I  +         + +L+K+T+  F +RR+  LR   K LG G
Sbjct: 183 --GPSSFYPEPKVGHAIIT-LTRRRVFNQDVFALEKLTRLLFTQRRRIALRVLTKSLGIG 239

Query: 247 EN 248
           E+
Sbjct: 240 ED 241


>gi|581699|emb|CAA55770.1| lmrB [Streptomyces lincolnensis]
 gi|159796252|gb|ABX00620.1| LmrB [Streptomyces lincolnensis]
          Length = 279

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 29/230 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ +GQNFL+D +I+K I  ++   +G  ++++GAG G LT  L  LG R V  +E D +
Sbjct: 8   RQELGQNFLVDPDIIKLIRRAAERTEG-PIVDLGAGDGALTLPLSRLG-RPVTAVELDPR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               +K +S++ P  ++++ +D L     +F   + P  ++ N+P+++ T  +   + A 
Sbjct: 66  R---VKRLSARAPENVKVVGEDIL-----RFRLPTVPHTVVGNIPFHVTTATMRRILVA- 116

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS-----PH-VF 195
              P W S  L+ Q EV  R          G  S++T    ++   FD S     P   F
Sbjct: 117 ---PAWVSAVLVVQWEVARRRAG------IGGCSLVT---AESWPWFDFSVLKRVPRFAF 164

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            P+P V   ++       P+       +   ++ F  R   LR+ L+R+G
Sbjct: 165 RPAPSVDGGILVIERRPEPLVRERREYQDFVRQVFTGRGHGLREILQRIG 214


>gi|212543995|ref|XP_002152152.1| dimethyladenosine transferase [Penicillium marneffei ATCC 18224]
 gi|210067059|gb|EEA21152.1| dimethyladenosine transferase [Penicillium marneffei ATCC 18224]
          Length = 401

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 22/239 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLN------ILKKIAESSGSLDGITVIE---IGAGPGNLTQMLL 66
           + K +P   + +N +   N      ILK    +   +D   + E   +G G G LT+ +L
Sbjct: 18  YTKNMPSGSLKKNPIFKFNTDIGQHILKNPGIADAIVDKANIKEHEVVGPGTGVLTRRIL 77

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKF--FNISSPIRII 122
              A+    IE D +    L  +    P   +L II  D +KVD ++   F++      I
Sbjct: 78  A-KAKSCTAIELDPRMAAELTKMVQGTPMQKKLRIILGDFIKVDLKEIGHFDV-----FI 131

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           +N PY I + L+F  ++    P       L+ Q+E  +R+ A+     Y RLSV   +  
Sbjct: 132 SNTPYQISSPLVFKLLAMPRPP---RVSVLMVQREFAQRLIARPGDAMYSRLSVNAQFHA 188

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
             + +  +  + F P P+V S+V+   P  +      E L  + +  F ++ KTLR S 
Sbjct: 189 ICSHILKVGKNNFSPPPQVESSVVKIEPRPDRPDISWEELDGMLRICFNRKNKTLRSSF 247


>gi|50306253|ref|XP_453098.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|52788270|sp|P78697|DIM1_KLULA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49642232|emb|CAH00194.1| KLLA0D00594p [Kluyveromyces lactis]
          Length = 320

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+EIG G GNLT  +L   ARKV+ +E D +   
Sbjct: 35  LGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILE-QARKVVAVEFDPRMAA 93

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K +   +F++      I+N PY I + L+F  I+   
Sbjct: 94  ELTKRVHGTPVEKKLEILLGDFMKTELP-YFDVC-----ISNTPYQISSPLVFKLINQPK 147

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P PKV 
Sbjct: 148 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPKVE 204

Query: 203 STVIHFIPHLNPIP 216
           S+V+  I   NP P
Sbjct: 205 SSVVR-IEIKNPRP 217


>gi|28210013|ref|NP_780957.1| dimethyladenosine transferase [Clostridium tetani E88]
 gi|28202448|gb|AAO34894.1| dimethyladenosine transferase [Clostridium tetani E88]
          Length = 136

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + QKEVGER++A+  +  YG LS+L  +     ++  +SP  F P PKV S +I      
Sbjct: 1   MIQKEVGERMSAKPKAKEYGSLSLLVQYYCDINIIRRVSPSSFIPRPKVDSVIIKLDKLQ 60

Query: 213 NPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGG------ENLLHQAGIETNLRAENL 264
            P       E   KI + AF  RRKT+   +K L        E     + I+   R E L
Sbjct: 61  KPRVSVKDEELFFKIIRSAFNMRRKTMWNVIKSLSNLDKEIIEKAFRVSNIDPKRRGETL 120

Query: 265 SIEDFCRITNILTDN 279
           S+E+F     IL+D+
Sbjct: 121 SVEEFA----ILSDS 131


>gi|168705823|ref|ZP_02738100.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246]
          Length = 165

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 13/167 (7%)

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T L+ N +      P  E + ++ Q E+ ER+ A  N+  Y  LSVL  
Sbjct: 1   KLVANLPYVIATPLISNLLIGH---PEIERMVVMVQWEIAERMKAVPNTKDYNALSVLVQ 57

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTL 237
                  +  ++P  F P PKV S ++   P+        + +K     ++ +  RRK L
Sbjct: 58  SVADVETVRKVAPTNFHPRPKVDSAIVLIKPNAEKRAKVGDVMKFRIFLRDLYVHRRKNL 117

Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RQ+L        ++   +  L + GI+  LR+E L IE   R+  + 
Sbjct: 118 RQALVGWPTGPREKKDVDAKLAELGIDGTLRSEALDIEQHLRLAAVF 164


>gi|213581623|ref|ZP_03363449.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 152

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H   + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ-----GH---LARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSPI 119
           +    +G R  K+ VIE D+     L+      P +L I Q DA+ ++F E    +  P+
Sbjct: 53  E---PVGERLDKLTVIELDRDLAARLQTHPFLGP-KLTIYQQDAMTMNFGELSAQLGQPL 108

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A
Sbjct: 109 RVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVA 150


>gi|309798998|ref|ZP_07693255.1| dimethyladenosine transferase [Streptococcus infantis SK1302]
 gi|308117402|gb|EFO54821.1| dimethyladenosine transferase [Streptococcus infantis SK1302]
          Length = 140

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 11/135 (8%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + QKEV +RI+A+ N+  YG LS+   +   A + F +   VF P+P V S ++  +   
Sbjct: 1   MMQKEVADRISAKPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRLP 60

Query: 213 NPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRA 261
            P     +     K+++ +F  RRKTL  +L    G+           L QAG+  ++R 
Sbjct: 61  EPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEIKDKLTKALDQAGLSPSVRG 120

Query: 262 ENLSIEDFCRITNIL 276
           E L +E+F  + + L
Sbjct: 121 EALGLEEFASLADAL 135


>gi|289618785|emb|CBI54610.1| unnamed protein product [Sordaria macrospora]
          Length = 401

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 13/219 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I   I + +       V+EIG G GN+T   L   A+KVI I+ D + 
Sbjct: 41  KDYGQHILKNPGISDAIVDKAFLKPTDVVVEIGPGTGNITVRALE-KAKKVIAIDIDPRM 99

Query: 83  FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +       P   +LE+I  D +K+       +     +I+N PY I + L+F  ++ 
Sbjct: 100 GAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFKMLAM 154

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              P       L+FQ+E  +R+ A+     Y RLSV   +      +  +    F P PK
Sbjct: 155 PNPP---RVAVLMFQREFAKRLVARPGDALYSRLSVNVNFWATCKHIMKVGKQNFKPPPK 211

Query: 201 VTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTL 237
           V S V+   P +         E    + + AF ++ KTL
Sbjct: 212 VESDVVRIEPLIGSARPNIAFEEFDGLLRIAFNRKNKTL 250


>gi|330719898|gb|EGG98373.1| Dimethyladenosine transferase [gamma proteobacterium IMCC2047]
          Length = 155

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D NI++ I  S        + EIG G G +T+ LL      + V+E D+ 
Sbjct: 10  RKRFGQNFLQDQNIIRNILLSINPKADDNIAEIGPGLGAITEHLLKATNGHLNVVEIDRD 69

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLLF 135
              +LK     +P  L I Q DALK DF +      + +  +RI+ NLPYNI T L+F
Sbjct: 70  LVQVLKTQFFNYP-ELNIHQGDALKFDFSQLVASDQSDTQKLRIVGNLPYNISTPLIF 126


>gi|168705804|ref|ZP_02738081.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246]
          Length = 208

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 13/167 (7%)

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T L+ N +      P  E + ++ Q E+ ER+ A  N+  Y  LSVL  
Sbjct: 44  KLVANLPYVIATPLISNLLIGH---PEIERMVVMVQWEIAERMKAVPNTKDYNALSVLVQ 100

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTL 237
                  +  ++P  F P PKV S ++   P+        + +K     ++ +  RRK L
Sbjct: 101 SVADVETVRKVAPTNFHPRPKVDSAIVLIKPNAEKRAKVGDVMKFRIFLRDLYVHRRKNL 160

Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RQ+L        ++   +  L + GI+  LR+E L IE   R+  + 
Sbjct: 161 RQALVGWPTGPREKKDVDAKLAELGIDGTLRSEALDIEQHLRLAAVF 207


>gi|50293399|ref|XP_449111.1| hypothetical protein [Candida glabrata CBS 138]
 gi|52782776|sp|Q6FKY3|DIM1_CANGA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49528424|emb|CAG62081.1| unnamed protein product [Candida glabrata]
          Length = 317

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKV+ +E D +   
Sbjct: 34  LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-QARKVVAVEMDPRMAA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K +   +F+I      I+N PY I + L+F  I+   
Sbjct: 93  ELTKRVHGTPAEKKLEIMLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLINQPR 146

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 147 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGRNNFRPPPQVE 203

Query: 203 STVIHFIPHLNPIP 216
           S+V+  I   NP P
Sbjct: 204 SSVVR-IEIKNPRP 216


>gi|156838911|ref|XP_001643153.1| hypothetical protein Kpol_449p12 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113749|gb|EDO15295.1| hypothetical protein Kpol_449p12 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 319

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKV+ +E D +   
Sbjct: 35  LGQHILKNPLVAQGIVDKANIKPSDIVLEVGPGTGNLTVRILE-QARKVVAVEMDPRMAA 93

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K +   +F+I      I+N PY I + L+F  I+   
Sbjct: 94  ELTKRVHGTPAEKKLEIMLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLINQPR 147

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 148 PP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGRNNFRPPPQVE 204

Query: 203 STVIHFIPHLNPIP 216
           S+V+  I   NP P
Sbjct: 205 SSVVR-IEIKNPRP 217


>gi|290559679|gb|EFD93005.1| ribosomal RNA adenine methylase transferase [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 262

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 19/187 (10%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL D ++  KI ++S       ++EIG+G G LT+ + TL  +KV  IE D   +   + 
Sbjct: 7   FLKDESVFNKIIKASELKKDDIILEIGSGDGRLTKRIATL-VKKVYAIEIDTNLYDSART 65

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTW 143
           +     + +E I  DAL ++F +  N     +II+NLPY I + +    I       D +
Sbjct: 66  LVEN--DNIEFINADALSIEFPENAN-----KIISNLPYAISSPITEKIIYFLNKKRDGF 118

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
                   L++Q E G R+ A      Y  +SV   +      + ++S + F P P V S
Sbjct: 119 A------VLMYQLEFGNRMLAFPGIRDYSMISVFAQYTCDVKHISNVSKNSFRPKPAVES 172

Query: 204 TVIHFIP 210
            ++  IP
Sbjct: 173 IILKLIP 179


>gi|260943356|ref|XP_002615976.1| dimethyladenosine transferase [Clavispora lusitaniae ATCC 42720]
 gi|238849625|gb|EEQ39089.1| dimethyladenosine transferase [Clavispora lusitaniae ATCC 42720]
          Length = 322

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 12/185 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKV+ +E D +   
Sbjct: 34  LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-QARKVVAVEMDPRMAA 92

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K D   +F++      I+N PY I + L+F  ++   
Sbjct: 93  ELTKRVHGTPQQKKLEILLGDFMKTDLP-YFDVC-----ISNTPYQISSPLVFKLLNQPK 146

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 147 PP---RVSILMFQREFALRLLARPGDGLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 203

Query: 203 STVIH 207
           S+V+ 
Sbjct: 204 SSVVR 208


>gi|153006650|ref|YP_001380975.1| dimethyladenosine transferase [Anaeromyxobacter sp. Fw109-5]
 gi|152030223|gb|ABS27991.1| dimethyladenosine transferase [Anaeromyxobacter sp. Fw109-5]
          Length = 356

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 4/101 (3%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + +L  Y +  KK  GQNFL D  IL  IA  +    G  V+E+GAG G+LT  LL  
Sbjct: 14  SPRALLDKYGLRAKKSWGQNFLGDEAILDDIARLAAPRPGDPVVELGAGLGHLTARLLAR 73

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           GA +VI +E+D+    +L+    +  +RL +++ DA ++D+
Sbjct: 74  GA-EVIAVERDRDMVRVLR---GELGDRLRLLEADAARLDY 110



 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I ++ NLPY++ + +LF+ +              L Q+EV ER+ A   S  +G  SVL 
Sbjct: 191 IAVVGNLPYHLTSPILFSLLDQLE---HVSRAVFLLQREVAERLAAPPGSRDWGVASVLL 247

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRK 235
                 ++   +    F P P V S V+  I   P            +++ +  F +RRK
Sbjct: 248 QREADVSVERIVPSGAFVPPPNVDSAVLCAIFRPPGEGLAVADPGRFRRLVKAGFAQRRK 307

Query: 236 TLRQSL---KRLGGENL---LHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L   K +  E L   L  AG++   R E L++E++  +   L
Sbjct: 308 TLGNALRAGKVVPEEALSRALQAAGLDPGRRGETLTVEEWAALDRAL 354


>gi|118575664|ref|YP_875407.1| dimethyladenosine transferase (rRNA methylation) [Cenarchaeum
           symbiosum A]
 gi|118194185|gb|ABK77103.1| dimethyladenosine transferase (rRNA methylation) [Cenarchaeum
           symbiosum A]
          Length = 221

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 22/213 (10%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           ++IA+S+G   G TV+E+G G G LT+ L   GAR +I +E++ + +   +  +S H   
Sbjct: 8   RRIADSAGISPGDTVLEVGTGLGALTRELCGRGAR-IISVERNGRLYG--EASASLHCEG 64

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           LE+ + D   V  E  F++      ++NLPY+  +R    W+       F   +  + QK
Sbjct: 65  LELRRGDGFAV--EDGFDV-----FVSNLPYSQ-SRRAVEWL---VQRDFARGIVTV-QK 112

Query: 157 EVGERITAQKNSPHYGR-LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           E   ++   +  P   R + VL G   +  ++F ++   F P P+V S V+  +     I
Sbjct: 113 EFAAKL--MEADPRRRRAIGVLAGHCFEMRVLFPVARSCFDPPPRVDSVVVE-LAKRRTI 169

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           P     + +     F  RRKT+R  +K+ G E 
Sbjct: 170 P---GGVVRAVNGIFSYRRKTMRGIMKQFGREG 199


>gi|124028496|ref|YP_001013816.1| dimethyladenosine transferase [Hyperthermus butylicus DSM 5456]
 gi|123979190|gb|ABM81471.1| Dimethyladenosine transferase [Hyperthermus butylicus DSM 5456]
          Length = 251

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 30/268 (11%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ +GQ+FL+   + +  A  +       ++E+G G G LT  +L   + ++  +E D +
Sbjct: 5   RRELGQHFLVARWVARIFAGWACRFR--RLLEVGVGQGFLTSTILRSCSVEIAGLELDLR 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L  IS      + +I D       E    +     +  ++PYNI   LL   +   
Sbjct: 63  LVGELASISFYFTGFMPVIADAV-----EPPLRLGGVDAVYGSIPYNITGPLLSLLVVEA 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS------PHVF 195
             P       LL Q+EV +R+ A+  +  YGR++VL        +++D+       P  F
Sbjct: 118 RKPAL-----LLLQREVVDRLAAKPGTASYGRITVLV------RLVYDVKPGPVVPPSAF 166

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            P PKV S ++  +P  + P P  L  ++++T+  F +R K   +   +  G  L    G
Sbjct: 167 RPRPKVYSRIVELVPRPDAPSPDMLRRVEELTKCMFSERNKRAAKVAAKCIGIELSKIEG 226

Query: 255 -IETNLRAENLSIEDFCRITNILTDNQD 281
            +  ++R   L  E F +    L D+Q+
Sbjct: 227 LVGRDIRVYQLEPEKFIQ----LLDSQN 250


>gi|269986492|gb|EEZ92777.1| ribosomal RNA adenine methylase transferase [Candidatus
           Parvarchaeum acidiphilum ARMAN-4]
          Length = 264

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 18/187 (9%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL D  + +KI ++S       VIEIG+G G LT+ +     +KV  IE D   F   + 
Sbjct: 7   FLRDEKVFQKIIQASDLNSEDVVIEIGSGDGRLTKHIAPY-VKKVYAIELDTNLFDSART 65

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTW 143
           +   + N +E I  DAL ++F    N     +II+NLPY I + +    I       D  
Sbjct: 66  LLEDNKN-IEFINGDALDLEFPDDAN-----KIISNLPYAISSPITEKIIYFLNNKKDGL 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
                   L++Q E GER+ A      Y  +SV T +     ++  +S + F P P V S
Sbjct: 120 A------VLMYQLEFGERMLAFPGIRDYSMISVFTQYTCNIKLVSMVSKNAFRPRPAVES 173

Query: 204 TVIHFIP 210
            ++   P
Sbjct: 174 ILLKVTP 180


>gi|146414153|ref|XP_001483047.1| dimethyladenosine transferase [Meyerozyma guilliermondii ATCC 6260]
          Length = 497

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI  E D +   
Sbjct: 213 LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-QARKVIASEMDPRMAA 271

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K D   +F++      I+N PY I + L+F  ++   
Sbjct: 272 ELTKRVHGTPQQKKLEILLGDFIKTDLP-YFDVC-----ISNTPYQISSPLVFKLLNQPR 325

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 326 PP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 382

Query: 203 STVIHFIPHLNPIP 216
           S+V+  I   NP P
Sbjct: 383 SSVVR-IEIKNPRP 395


>gi|159041898|ref|YP_001541150.1| ribosomal RNA adenine methylase transferase [Caldivirga
           maquilingensis IC-167]
 gi|157920733|gb|ABW02160.1| ribosomal RNA adenine methylase transferase [Caldivirga
           maquilingensis IC-167]
          Length = 273

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 24/259 (9%)

Query: 28  NFLLD---LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +F++D   LN + ++A+         V+E+G G   LT  L    A+ V   + +     
Sbjct: 34  HFMVDPVYLNTIAQLAKDE------KVLEVGFGLSYLTHYLAKY-AQHVFACDVNPMMIK 86

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            +K I     N  ++   DAL       +     + +++N+PY+I T  L   +  D   
Sbjct: 87  AIKAIGLSEVNA-DLFICDALT------YKPPIELTVVSNIPYSI-TSRLLLRLLTDYGA 138

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
                L L  Q+EV  R+ A+  S  YGRLSV+T   +   ++  + P  F+P PKV S 
Sbjct: 139 ---RKLILTLQREVALRLAAKPGSTDYGRLSVITQCLSLVKVIKHVPPWAFWPRPKVYSA 195

Query: 205 VIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           ++   P   P PC  + +L+ +T + F +  K   + +K+  G           N R   
Sbjct: 196 IVELKPL--PKPCVDVRALESLTSKLFTQPNKKAIKVIKQFYGLREGEAPSYLLNKRVRE 253

Query: 264 LSIEDFCRITNILTDNQDI 282
           LS+ +   + N+L +   I
Sbjct: 254 LSVNEVAELVNVLINMGKI 272


>gi|190348449|gb|EDK40904.2| dimethyladenosine transferase [Meyerozyma guilliermondii ATCC 6260]
          Length = 497

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI  E D +   
Sbjct: 213 LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-QARKVIASEMDPRMAA 271

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K D   +F++      I+N PY I + L+F  ++   
Sbjct: 272 ELTKRVHGTPQQKKLEILLGDFIKTDLP-YFDV-----CISNTPYQISSPLVFKLLNQPR 325

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 326 PP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 382

Query: 203 STVIHFIPHLNPIP 216
           S+V+  I   NP P
Sbjct: 383 SSVVR-IEIKNPRP 395


>gi|221122621|ref|XP_002168090.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 479

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           N+L +I  D LK +   +F+       +ANLPY I +  +F  +      PF+    L+F
Sbjct: 4   NKLHLIVGDVLKSEL-PYFDCC-----VANLPYQISSPFVFKLL---LHRPFFRCAVLMF 54

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           Q+E  +R+ A+     Y RLS+ T    +   +  +  + F P PKV S+V+   P   P
Sbjct: 55  QREFAQRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPP 114

Query: 215 IPCCLESLKKITQEAFGKRRKTL 237
            P   +    + + AF ++ KTL
Sbjct: 115 PPINFQEWDGLVRIAFVRKNKTL 137


>gi|255712883|ref|XP_002552724.1| KLTH0C11704p [Lachancea thermotolerans]
 gi|238934103|emb|CAR22286.1| KLTH0C11704p [Lachancea thermotolerans]
          Length = 322

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 12/186 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI +E D +   
Sbjct: 35  LGQHILKNPLVAQGIVDKAQIKPSDVVLEVGPGTGNLTVRILE-QARKVIAVEMDPRMGA 93

Query: 85  IL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L  +   +    +L+I+  D +K D   +F+I      I+N PY I + L+F  I+   
Sbjct: 94  ELTKRVHGTAGEKKLDILLGDFMKTDLP-YFDIC-----ISNTPYQISSPLVFKLINQPK 147

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 148 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 204

Query: 203 STVIHF 208
           S+V+  
Sbjct: 205 SSVVRL 210


>gi|290559283|gb|EFD92620.1| ribosomal RNA adenine methylase transferase [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 262

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 31/219 (14%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFF 83
           GQNFL+D N+L+     +  +   T+++IGAG G++     T  ++K  VI IE+D + +
Sbjct: 24  GQNFLVDENVLEIEINEAHLVSEDTILDIGAGFGSIE----TKASKKCHVIAIERDIKCY 79

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L D    + N ++I+  DAL + + +F       +I++N PYNI  R+    I   + 
Sbjct: 80  SYLIDKYEINAN-IQIVNADALNMIYPEF------TKIVSNPPYNIADRI----IEKISH 128

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
             F +S+ +L +    E  + Q ++      S +     +   + ++    FFP P+VTS
Sbjct: 129 YNFADSIMILPKTMADELCSIQSHTS----FSAINKLFMEFYKIMEVERTSFFPEPRVTS 184

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            ++      N           I Q+ F +R  TL+ +++
Sbjct: 185 VMVRIKKKEN----------NILQDTFRRREMTLKNAIR 213


>gi|325120439|emb|CBZ55993.1| putative dimethyladenosine transferase [Neospora caninum Liverpool]
          Length = 367

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 23/224 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQ+ L +  +L KI +++      TV+EIG G GNLT  LL + AR+V+ ++ D +
Sbjct: 52  QKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALDVDAR 110

Query: 82  FFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               +K   IS+   N L +   DAL+ D   F     P++                   
Sbjct: 111 MVSEVKKRAISNGFMN-LVVRHGDALRSDLGTFDAQQPPLQ------------------E 151

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            DT         L+FQKE GER+ AQ    +Y RL+           +  +    F P P
Sbjct: 152 RDT-STVTRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVEAKHFTPPP 210

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           KV S V+  +P  N +    +    + +  FG++ +TL    +R
Sbjct: 211 KVDSVVVKVVPRPNLLDVDFKEWDGLMRICFGRKNRTLHALFRR 254


>gi|134097339|ref|YP_001103000.1| N-6-aminoadenine-N-methyltransferase,erythromycin resistance
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291009285|ref|ZP_06567258.1| rRNA (adenine-N(6)-)-methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|150421549|sp|P07287|ERME_SACEN RecName: Full=rRNA adenine N-6-methyltransferase; Short=NMT;
           AltName: Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|6224590|emb|CAB60001.1| N-6-aminoadenine-N-methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909962|emb|CAM00074.1| N-6-aminoadenine-N-methyltransferase,erythromycinresistance
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 381

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 29/218 (13%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL D   + +IAE++     + V+E G G G LT+ L    AR+V   E D +
Sbjct: 36  RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPGEGLLTRELADR-ARQVTSYEIDPR 94

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++  S HPN +E++  D L  +         P   +  +PY I T  + +W    
Sbjct: 95  LAKSLREKLSGHPN-IEVVNADFLTAE-----PPPEPFAFVGAIPYGI-TSAIVDWCLE- 146

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT-------GWRTKATMMFDISPHV 194
              P  E+ T++ Q E      A+K +  YGR S LT        W      +  +   +
Sbjct: 147 --APTIETATMVTQLEF-----ARKRTGDYGRWSRLTVMTWPLFEW----EFVEKVDRRL 195

Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAF 230
           F P PKV S ++       P+     LE  + + +  F
Sbjct: 196 FKPVPKVDSAIMRLRRRAEPLLEGAALERYESMVELCF 233


>gi|116330394|ref|YP_800112.1| dimethyladenosine transferase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116124083|gb|ABJ75354.1| Dimethyladenosine transferase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 301

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 125/299 (41%), Gaps = 44/299 (14%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGIT-VIEIGAGPGNLT 62
           K   ++  L      P K  GQNFL+D N ++ I    SS  L  I  ++EIG G G ++
Sbjct: 10  KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILNCLSSDLLSTIDRILEIGPGLGAIS 69

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             LL    + V + E D    P+      ++    EI + +AL  DF   ++ +S   + 
Sbjct: 70  HGLLDF-QKPVTLFEID----PVYAHWLREYLPEFEIREGNAL--DFLHEYSQNS-TYLF 121

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPY I + L  + +         +    L QKE  +RI+++ +S  +  LS    W  
Sbjct: 122 GNLPYYISSELTLSSVKNLKE---LKGAAFLVQKEFAKRISSEPSSIQF-YLSAYGNWSL 177

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           K     D+    F+P P V S+++ +   P        + +L+ + + AF  +RK L  S
Sbjct: 178 KK----DVKAGAFYPRPNVDSSILEYKSCPVFEKQSGFI-ALECLCRTAFWGKRKKLTSS 232

Query: 241 LKR----------LGGENL------------LHQAGIETNLRAENLSIEDFCRITNILT 277
           L+           +  EN             L  AGI+ N R E L   DF      L+
Sbjct: 233 LRNAPIASLPVEVVSSENFSEEQFRNESVQSLENAGIDLNKRPEELRTADFYEAAQSLS 291


>gi|254583294|ref|XP_002497215.1| ZYRO0F00308p [Zygosaccharomyces rouxii]
 gi|238940108|emb|CAR28282.1| ZYRO0F00308p [Zygosaccharomyces rouxii]
          Length = 319

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+E+G G GNLT  +L    RK   +E D +   
Sbjct: 35  LGQHILKNPLVAQGIVDKAQLRPSDTVLEVGPGTGNLTVRILE-QVRKAYAVEMDPRMAA 93

Query: 85  IL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L K +      R LEI+  D +K D   +F++      I+N PY I + L+F  I+   
Sbjct: 94  ELTKRVRGTDGERKLEILLGDFIKTDLP-YFDVC-----ISNTPYQISSPLVFKLINQPR 147

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS           +  +S + F P P+V 
Sbjct: 148 PP---RVAVLMFQREFAMRLVARPGDALYCRLSANVQMWANVVHIMKVSKNNFRPPPQVE 204

Query: 203 STVIHF 208
           S+V+  
Sbjct: 205 SSVVRL 210


>gi|34394642|dbj|BAC83949.1| Ribosomal RNA adenine dimethylase-like protein [Oryza sativa
           Japonica Group]
          Length = 261

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           ++L +I+ DA++ +F +F ++      +AN+PY I + L+   +     P  + + TLL 
Sbjct: 16  HKLTVIRADAVEAEFPEF-DV-----CVANIPYGISSPLIAKLL---FGPYRFRAATLLL 66

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           QKE   R+ A      Y RL+        A ++ D+S   F P PKV S+++   P    
Sbjct: 67  QKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFVPMPKVDSSLVEIRPRAAE 126

Query: 215 IPCCLESLKKITQEAFGKRRKTL 237
               L      T+  FG++ KTL
Sbjct: 127 PNVDLAEWLAFTRSCFGQKNKTL 149


>gi|238593367|ref|XP_002393175.1| hypothetical protein MPER_07142 [Moniliophthora perniciosa FA553]
 gi|215460264|gb|EEB94105.1| hypothetical protein MPER_07142 [Moniliophthora perniciosa FA553]
          Length = 228

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 9/142 (6%)

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           RLEI+  D +K D   +F++      I+N PY I + L+F  +S    P       L+FQ
Sbjct: 21  RLEIMIGDFVKADL-PYFDVC-----ISNTPYQISSPLIFRLLSQRPLP---RICILMFQ 71

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           +E   R+ A+  S  + RLS       K   +  +  + F P PKV S+V+   P   P 
Sbjct: 72  REFALRLIAKAGSELWSRLSANVQLYAKVDYLMHVGKNNFRPPPKVESSVVRIAPRDPPP 131

Query: 216 PCCLESLKKITQEAFGKRRKTL 237
           P   E    + +  F +R KT+
Sbjct: 132 PVKFEEFDGLGRIVFSRRNKTI 153


>gi|213406479|ref|XP_002174011.1| dimethyladenosine transferase [Schizosaccharomyces japonicus
           yFS275]
 gi|212002058|gb|EEB07718.1| dimethyladenosine transferase [Schizosaccharomyces japonicus
           yFS275]
          Length = 307

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  + + I + S      TV+E+G G GNLT  +L    +KV  +E D + 
Sbjct: 26  KDFGQHILKNPLVAQGIVDKSDLKQSDTVLEVGPGTGNLTVRILE-KVKKVTAVEMDPRM 84

Query: 83  FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L       P   +L I+  D +K +   +F++      I+N PY I + L+F  +  
Sbjct: 85  AAELTKRVQGTPQEKKLNILLGDVIKTELP-YFDVC-----ISNTPYQISSPLVFKLLKH 138

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              P       L+FQ+E   R+ A+   P Y RLS           +  +  + F P P+
Sbjct: 139 RPAPRL---AVLMFQREFALRLVAKPGDPLYCRLSANVQMWAHVKHIMKVGKNNFRPPPQ 195

Query: 201 VTSTVI 206
           V S+V+
Sbjct: 196 VESSVV 201


>gi|332969210|gb|EGK08240.1| rRNA (adenine-N(6)-)-methyltransferase [Desmospora sp. 8437]
          Length = 283

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 18/186 (9%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           + GQ+ + +  ++K++ + S       V+EIGAG GNLT M L   ++KV+ +E D  F 
Sbjct: 26  FPGQHLMHNKGLIKELVKISEVNRQDLVLEIGAGTGNLT-MPLAEKSKKVLAVENDPVFA 84

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L+       N +E+IQ D L+++  +      P  ++AN+PY+I T +L       T 
Sbjct: 85  ERLQRKIESVSN-IEVIQQDFLQMNLPRV-----PFSVVANIPYSITTPILGKLFDRPTV 138

Query: 144 PPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRT--KATMMFDISPHVFFPSPK 200
           P       L+ +K   +R TA    +P       +  WR   +  M   I PH F P P+
Sbjct: 139 P--IRRAVLVMEKGAAKRFTADPITNPR------ILKWRMWFEMKMGRTIPPHHFSPPPR 190

Query: 201 VTSTVI 206
           V S ++
Sbjct: 191 VDSAIL 196


>gi|54024690|ref|YP_118932.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia
           farcinica IFM 10152]
 gi|54016198|dbj|BAD57568.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia
           farcinica IFM 10152]
          Length = 269

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 19/192 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNFL D +I ++I  S+G   G  V+EIG G G LT  LL +  R V+  E D ++   L
Sbjct: 19  QNFLADADIARRIVRSAGVGAGDLVLEIGPGDGMLTAQLLGVAGR-VLAYEIDARYAARL 77

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           +   +  P R+          DF        P  ++AN+P+   T ++   ++A      
Sbjct: 78  QARYAHDP-RIHCYHK-----DFRDAPLPDEPFGVVANVPFGSTTDIVRWCLAARQ---- 127

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF---DISPHVFFPSPKVTS 203
             S TLL Q+E      A+K++  YGR S LT      T M     I    F P P+V  
Sbjct: 128 LTSATLLTQREF-----ARKHTGDYGRWSKLTVTHWPTTTMHLGARIDRRHFRPVPRVDG 182

Query: 204 TVIHFIPHLNPI 215
            ++H     +P+
Sbjct: 183 ALLHLRRRPDPL 194


>gi|116328998|ref|YP_798718.1| dimethyladenosine transferase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116121742|gb|ABJ79785.1| Dimethyladenosine transferase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 301

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 125/299 (41%), Gaps = 44/299 (14%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGIT-VIEIGAGPGNLT 62
           K   ++  L      P K  GQNFL+D N ++ I    SS  L  I  ++EIG G G ++
Sbjct: 10  KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILNCLSSDLLSTIDRILEIGPGLGAIS 69

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             LL    + V + E D    P+      ++    EI + +AL  DF   ++ +S   + 
Sbjct: 70  HGLLDF-QKPVTLFEID----PVYAHWLREYLPEFEIREGNAL--DFLHEYSQNS-TYLF 121

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPY I + L  + +         +    L QKE  +RI+++ +S  +  LS    W  
Sbjct: 122 GNLPYYISSELTLSSVKNLKE---LKGAAFLVQKEFAKRISSEPSSIQF-YLSAYGNWSL 177

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           K     D+    F+P P V S+++ +   P        + +L+ + + AF  +RK L  S
Sbjct: 178 KK----DVKAGAFYPRPNVDSSILEYKSCPVFEKQSGFI-ALECLCRTAFWGKRKKLTSS 232

Query: 241 LKR----------LGGENL------------LHQAGIETNLRAENLSIEDFCRITNILT 277
           L+           +  EN             L  AGI+ N R E L   DF      L+
Sbjct: 233 LRNAPIASLPVEVVSSENFSEEQFRNESVQSLENAGIDLNKRPEELRTADFHEAAQSLS 291


>gi|45656257|ref|YP_000343.1| dimethyladenosine transferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|294827644|ref|NP_710586.2| dimethyladenosine transferase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45599491|gb|AAS68980.1| dimethyladenosine transferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|293385487|gb|AAN47604.2| dimethyladenosine transferase [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 301

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 127/300 (42%), Gaps = 46/300 (15%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT----VIEIGAGPGNL 61
           K   ++  L      P K  GQNFL+D N ++ I +   + D ++    ++EIG G G +
Sbjct: 10  KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILDCL-NFDLLSTIDRILEIGPGLGAI 68

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           +  LL    + V + E D    PI  +   ++    E+ + +AL  DF   ++  S   +
Sbjct: 69  SHGLLDF-KKPVTLFEID----PIYSNWLREYLPEFELKEGNAL--DFLSEYSQDS-TYL 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPY I + L  N +         +  T L QKE  +RI+A+ +S  +  LS    W 
Sbjct: 121 FGNLPYYISSELTLNSVKNLKG---LKGATFLVQKEFAKRISAEPSSIQF-YLSAYGNWS 176

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
            K     DI    F+P P V S+++ +  +P        + +L+ I + AF  +RK L  
Sbjct: 177 LKK----DIKAGAFYPKPNVDSSILEYKSLPVFKNESGFI-ALECICRTAFWGKRKKLTS 231

Query: 240 SLKRLGGENL----------------------LHQAGIETNLRAENLSIEDFCRITNILT 277
           S +    E+L                      L    I+ + R E L  +DF     IL+
Sbjct: 232 SFRDAPIESLPLEVYSSENFSEKTFRTECLKALKSVNIDLDKRPEELKSKDFHEAAKILS 291


>gi|329766403|ref|ZP_08257949.1| ribosomal RNA adenine methylase transferase [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137172|gb|EGG41462.1| ribosomal RNA adenine methylase transferase [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 235

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 21/235 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +I +K +GQ+FL    I + I   +       V E+G G G LT  LL   A+KVI I+ 
Sbjct: 1   MIKRKRLGQHFLTSNTIAQSIVSEANISGNDIVFELGTGLGILTP-LLCEKAKKVISIDA 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNW 137
           D++ +   K       +R   I  D L V+F   F       I ++NLPY+  ++    W
Sbjct: 60  DRELYENAK-------SRFSHI--DNLTVEFGDGFQKQDKFSIFVSNLPYS-KSKEAIEW 109

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++     PF   + ++ QKE  E++   K++ +   +S++  +  +     ++  + F P
Sbjct: 110 LAI---TPFSHGI-IMVQKEFAEKLLT-KSTKNRRSVSIIANYVFEIEKFLNVGKNNFSP 164

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            PKV S V+      +     +  L K+    F  RRKT++   K+ G E L+ +
Sbjct: 165 PPKVDSVVLKITKKKSIEKDIINVLNKM----FSYRRKTIQNIFKQFGKETLMDK 215


>gi|45185713|ref|NP_983429.1| ACR026Wp [Ashbya gossypii ATCC 10895]
 gi|52782780|sp|Q75C90|DIM1_ASHGO RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|44981468|gb|AAS51253.1| ACR026Wp [Ashbya gossypii ATCC 10895]
          Length = 319

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 12/185 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKV+ +E D +   
Sbjct: 34  LGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-QARKVVAVEFDPRMAA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K +   +F+I      I+N PY I + L+F  I+   
Sbjct: 93  ELTKRVHGTPAEKKLEIMLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLINQPR 146

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 147 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHVMKVGRNNFRPPPQVE 203

Query: 203 STVIH 207
           S+V+ 
Sbjct: 204 SSVVR 208


>gi|730032|sp|Q04720|ERMJ_BACAN RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|143198|gb|AAA22597.1| rRNA methyltransferase [Bacillus anthracis]
          Length = 287

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 101/195 (51%), Gaps = 36/195 (18%)

Query: 24  YMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           + GQ+ + +  ++++I + +  S+D  TV+E+GAG G LT  +L+  A KV+ +E D +F
Sbjct: 21  FSGQHLMHNKKLIEEIVDRANISIDD-TVLELGAGKGALT-TVLSQKAGKVLAVENDSKF 78

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGT---RLLFNW 137
             IL   ++QH N  +II  D +K+    EKF        +++N+PY I T   ++L N 
Sbjct: 79  VDILTRKTAQHSN-TKIIHQDIMKIHLPKEKFV-------VVSNIPYAITTPIMKMLLNN 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------IS 191
            ++      ++   ++ +K   +R T++     + + S +  WR    M FD      IS
Sbjct: 131 PASG-----FQKGIIVMEKGAAKRFTSK-----FIKNSYVLAWR----MWFDIGIVREIS 176

Query: 192 PHVFFPSPKVTSTVI 206
              F P PKV S ++
Sbjct: 177 KEHFSPPPKVDSAMV 191


>gi|1169552|sp|Q03986|ERMD_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|143201|gb|AAA22599.1| macrolide-lincosamide-streptogramin B resistance methylase
           [Bacillus licheniformis]
          Length = 287

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 101/195 (51%), Gaps = 36/195 (18%)

Query: 24  YMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           + GQ+ + +  ++++I + +  S+D  TV+E+GAG G LT  +L+  A KV+ +E D +F
Sbjct: 21  FSGQHLMHNKKLIEEIVDRANISIDD-TVLELGAGKGALT-TVLSQKAGKVLAVENDSKF 78

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGT---RLLFNW 137
             IL   ++QH N  +II  D +K+    EKF        +++N+PY I T   ++L N 
Sbjct: 79  VDILTRKTAQHSN-TKIIHQDIMKIHLPKEKFV-------VVSNIPYAITTPIMKMLLNN 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------IS 191
            ++      ++   ++ +K   +R T++     + + S +  WR    M FD      IS
Sbjct: 131 PASG-----FQKGIIVMEKGAAKRFTSK-----FIKNSYVLAWR----MWFDIGIVREIS 176

Query: 192 PHVFFPSPKVTSTVI 206
              F P PKV S ++
Sbjct: 177 KEHFSPPPKVDSAMV 191


>gi|320590414|gb|EFX02857.1| dimethyladenosine transferase [Grosmannia clavigera kw1407]
          Length = 318

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 14/187 (7%)

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNIS 116
           GN+T  +L   ARK I IE D +    +       P   +LE++  DA+K +F  F ++ 
Sbjct: 55  GNITTRILE-KARKCIAIELDPRMAAEVTKRVQGGPLQKKLEVLLGDAIKTEFPPF-DV- 111

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
                I+N PY I + L+F  +S    P    +  L+FQKE  +R+ A+     Y RLSV
Sbjct: 112 ----CISNTPYQISSPLVFKLLSLPNPP---RTAVLMFQKEFAQRLVARPGDTLYCRLSV 164

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234
              +  +   +  +    F P P+V S V+   P             +  + + AF ++ 
Sbjct: 165 NAQFFARIAHVLKVGKANFNPPPQVESAVVRITPKTGSERPKFNFSEMDGMLRVAFNRKN 224

Query: 235 KTLRQSL 241
           +T+R S 
Sbjct: 225 RTMRASF 231


>gi|261886276|ref|ZP_06010315.1| dimethyladenosine transferase [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 168

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%)

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY + T ++   I         + L ++ Q+EV  + +++     +  L++LT  
Sbjct: 1   MVANLPYYVATNMILKAIDDKNC----KGLVVMIQREVAIKFSSEAGDKEFSSLAILTWL 56

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239
           + K  ++FD+    F P PKV S+VI  I   +  +    ++ K   + AF   RKTL +
Sbjct: 57  KGKCELLFDVPSSAFNPPPKVISSVIRIIKDRDLSLNLKYDNFKNFLRVAFSAPRKTLLK 116

Query: 240 SLKRLGGENLLHQAGIETNLRAENLS 265
           +L      NL+ +  +E     ENLS
Sbjct: 117 NL-----SNLVQRDRLEIFFNTENLS 137


>gi|330721180|gb|EGG99294.1| Dimethyladenosine transferase [gamma proteobacterium IMCC2047]
          Length = 112

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCC-LESLKKITQEAFGKRR 234
           +  +  +   +F + P  F P PKV S ++   P+  P IP    + L  +   AF +RR
Sbjct: 1   MVQYHCQVESLFKVPPTAFDPQPKVDSAIVRLTPYDKPPIPALDHKQLSSVVTTAFNQRR 60

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KT+R +LK+L     L   GI+  LR E L++++F  I++ LT
Sbjct: 61  KTIRNNLKKLISTEQLEALGIDPGLRPEKLTLQNFVAISDTLT 103


>gi|269986904|gb|EEZ93180.1| ribosomal RNA adenine methylase transferase [Candidatus
           Parvarchaeum acidiphilum ARMAN-4]
          Length = 263

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 105/218 (48%), Gaps = 31/218 (14%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFF 83
           GQNFL+D ++L +  E++       V++IGAG G++  ++    ++K  +I IEK+ + +
Sbjct: 24  GQNFLVDEDVLAEEIENAKLEPSDIVLDIGAGFGSIESVV----SKKCHIIAIEKEIKCY 79

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L D     PN ++II  DAL++ + KF       +II+N PYNI  R++    S D +
Sbjct: 80  SYLIDKYEIDPN-VQIINADALEMIYPKFN------KIISNPPYNITDRIIDKLSSYDFY 132

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
                S  ++    + +++ + KN   +  +  +     + T   ++    F+P P+VTS
Sbjct: 133 -----SGVMIIPNTISKQLLSDKNETKFSSIEKIFFKFEEIT---EVKKESFYPVPRVTS 184

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            +I      N           I QE F +R   L+ + 
Sbjct: 185 RMIKITKKKND----------IFQEIFRRREMLLKNAF 212


>gi|153824301|ref|ZP_01976968.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) [Vibrio cholerae B33]
 gi|126518177|gb|EAZ75402.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) [Vibrio cholerae B33]
          Length = 108

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237
           +  K   + ++ P  F P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+
Sbjct: 2   YYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTV 61

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           R   K L     L   GI   +R ENL++  F  + N L
Sbjct: 62  RNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWL 100


>gi|224130164|ref|XP_002320768.1| predicted protein [Populus trichocarpa]
 gi|222861541|gb|EEE99083.1| predicted protein [Populus trichocarpa]
          Length = 210

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 16/153 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQ+++L+  I +++  S+   +G  ++EIG G G+LT +L+  GA  V+ IEKD 
Sbjct: 42  PRKSLGQHYMLNDEINEQLVASANVEEGDLILEIGPGTGSLTNVLIDAGA-TVLAIEKDA 100

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVD--------FEKFFNISSPIR---IIANLPYNI 129
               ++++  +   NR +++Q+D +K           E   ++S   R   ++AN+P+NI
Sbjct: 101 HMAALVRERFAD-TNRFKVLQEDFIKCHIRSHMLSMLESMGSLSEKPRYAKVVANIPFNI 159

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
            T ++   +   T   F E + LL Q E   R+
Sbjct: 160 STDVIKQLLP--TGDIFSE-IVLLLQDETALRL 189


>gi|18390036|gb|AAL68827.1|AF462611_2 23S ribosomal RNA methyltransferase ErmML [Micrococcus luteus]
          Length = 281

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 34/262 (12%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D   + +++   G   G  ++EIG G G LT+ L  LG R +  +E D +    
Sbjct: 12  GQNFLTDHTTIDRLSRLVGDSTG-PIVEIGPGQGRLTRELQKLG-RSLTAVEIDSRLADR 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   S     +   +    +  DF  +   ++P  ++ N+P+++ T +L   +       
Sbjct: 70  LASASQFREQKHVTV----VNADFLHWPLPTTPYVVVGNVPFHLTTAILRRLLHDGA--- 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH------VFFPSP 199
            W  + LL Q EV  R          G  S++T    +     D S H       F P+P
Sbjct: 123 -WTQVVLLVQWEVARRRAG------IGGSSMMT---AQWWPWIDFSLHGRVPRSAFKPAP 172

Query: 200 KVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ-------SLKRLGGENLL 250
            V   ++      +P+  P   ES ++   + F  R + + +       SL + G   LL
Sbjct: 173 SVDGGLLEMTRRPDPLLSPDARESYRQFVHDVFTSRGRGIGEILANVSSSLGKRGALQLL 232

Query: 251 HQAGIETNLRAENLSIEDFCRI 272
              GI ++   ++LS E + R+
Sbjct: 233 KSEGIRSSSLPKDLSAEQWARL 254


>gi|15612943|ref|NP_241246.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125]
 gi|5822819|dbj|BAA83962.1| ERMK [Bacillus halodurans]
 gi|10172993|dbj|BAB04099.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125]
          Length = 284

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 32/205 (15%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P  + GQ+ + +  +L++I + +      TV+E+GAG G LT   L+  A++V+ +E DQ
Sbjct: 18  PPNFSGQHLMHNKKLLQEIVDQAKVSKKDTVLELGAGKGALT-TFLSERAKRVLAVEYDQ 76

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFN 136
            F  +L +    H     II +D +++   K         +++N+PY+I T    +LL N
Sbjct: 77  TFIQVL-NRKMAHAANTTIIHEDIMRIHLPK-----GEFVVVSNIPYSITTPIMKKLLSN 130

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------I 190
            +S       ++   ++ +K   +R T    SP      VL  WR    M FD      I
Sbjct: 131 PVSG------FQRGVIVMEKGAAKRFT----SPFIKNAYVL-AWR----MWFDLEYVKGI 175

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPI 215
           S   F P PKV S ++      +PI
Sbjct: 176 SRECFSPPPKVDSAMVFISRKPDPI 200


>gi|294936255|ref|XP_002781681.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239892603|gb|EER13476.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 913

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDISSQHPNRLEIIQDDALKVD 108
           TV+E+G G GN++  L  L A +V+ +E ++     + +    +  + +E++  D  ++ 
Sbjct: 548 TVLEMGPGTGNMSVKLSEL-ANRVVAMEVNEGLAKEVERRAEMKGASNMEVVTGDFKRLA 606

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
             +F        +IANLPY++ T  L   +      PF   + +L Q E G+++ A    
Sbjct: 607 LPRF------DVVIANLPYHLATGFLLKLMGH----PFRTGIIML-QHEFGKKLLADPGE 655

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228
             Y RLS+      KA  +  +    FFP P+ TS +I   P +            + + 
Sbjct: 656 KIYSRLSLNMRMFFKAERICKVPGRAFFPQPQTTSVIIRLTPRVPAPKVDFAEWDAMIRI 715

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQ 252
           AF ++ + + +  KRL   N+L  
Sbjct: 716 AFFRKNQDVFKMFKRLTVLNMLEH 739


>gi|38261101|ref|NP_940746.1| Erm(X) [Arcanobacterium pyogenes]
 gi|37993856|gb|AAR07014.1| Erm(X) [Arcanobacterium pyogenes]
          Length = 284

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 31/256 (12%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTDHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAYLG-RAITAVEVDAKLAAK 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   +S     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    P
Sbjct: 70  LTQETSS--AAVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA----P 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRTKATMMFD--ISPHVFFPSPKVT 202
            W    LL Q EV  R          G  +++T  W    T      +    F P P V 
Sbjct: 119 AWTDAVLLMQWEVARRRAG------VGASTMMTAQWSPWFTFHLGSRVPRSAFRPQPNVD 172

Query: 203 STVIHFIPHLNP-IPC-CLESLKKITQEAFGKRRKTLRQSLKRLG-------GENLLHQA 253
             ++      +P IP    ++ + +    F  R + +R+ L+R G        ++ LH  
Sbjct: 173 GGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIREILRRAGLFSSRSETQSWLHSR 232

Query: 254 GIETNLRAENLSIEDF 269
           GI+       L   D+
Sbjct: 233 GIDPATLPPRLHTSDW 248


>gi|307329006|ref|ZP_07608174.1| rRNA (adenine-N(6)-)-methyltransferase [Streptomyces violaceusniger
           Tu 4113]
 gi|306885368|gb|EFN16386.1| rRNA (adenine-N(6)-)-methyltransferase [Streptomyces violaceusniger
           Tu 4113]
          Length = 297

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 114/271 (42%), Gaps = 26/271 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M    H L T     +   ++  GQNFL+D   + ++  ++    G  ++E+GAG G LT
Sbjct: 1   MARNRHQLPTPRRTERDRARRAYGQNFLVDPGAVARVVRAARPGPGDLLVEVGAGKGVLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + L     R++I  E D+   P L++  +++P  + ++  D L     +      P  ++
Sbjct: 61  EALAPR-CRELISYEIDRHLIPGLRERLARYPQ-VRVVHQDFLDAAPPR-----EPFALV 113

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT--GW 180
            N+PY     ++   + A    P   S TLL Q E      A+K +  YGR S+LT   W
Sbjct: 114 GNVPYARTAEIVAWALRAA---PRLTSATLLTQAEY-----ARKRTGDYGRWSLLTVRSW 165

Query: 181 -RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKT 236
              +  +   ++   F P P V   ++       P+   P    +   + +  F     +
Sbjct: 166 PEVEWRLCGRVARAAFRPVPAVDGGILRLTRRPRPLLTDPVARSAYADLVELGFTGLGGS 225

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIE 267
           L  SL+R+     L +A      RA  L  E
Sbjct: 226 LHASLRRICPARALDRA-----FRAAGLGRE 251


>gi|6324989|ref|NP_015057.1| Dim1p [Saccharomyces cerevisiae S288c]
 gi|1169344|sp|P41819|DIM1_YEAST RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|601876|gb|AAA57357.1| dimethyladenosine transferase [Saccharomyces cerevisiae]
 gi|1370549|emb|CAA98001.1| DIM1 [Saccharomyces cerevisiae]
 gi|151942536|gb|EDN60882.1| dimethyladenosine transferase [Saccharomyces cerevisiae YJM789]
 gi|190407700|gb|EDV10965.1| dimethyladenosine transferase [Saccharomyces cerevisiae RM11-1a]
 gi|256271159|gb|EEU06250.1| Dim1p [Saccharomyces cerevisiae JAY291]
 gi|259149891|emb|CAY86694.1| Dim1p [Saccharomyces cerevisiae EC1118]
 gi|285815278|tpg|DAA11170.1| TPA: Dim1p [Saccharomyces cerevisiae S288c]
 gi|323302623|gb|EGA56429.1| Dim1p [Saccharomyces cerevisiae FostersB]
 gi|323306894|gb|EGA60178.1| Dim1p [Saccharomyces cerevisiae FostersO]
 gi|323331103|gb|EGA72521.1| Dim1p [Saccharomyces cerevisiae AWRI796]
 gi|323335244|gb|EGA76533.1| Dim1p [Saccharomyces cerevisiae Vin13]
 gi|323346064|gb|EGA80354.1| Dim1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323351899|gb|EGA84438.1| Dim1p [Saccharomyces cerevisiae VL3]
          Length = 318

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+ V+ +E D +   
Sbjct: 34  LGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILE-QAKNVVAVEMDPRMAA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K +   +F+I      I+N PY I + L+F  I+   
Sbjct: 93  ELTKRVRGTPVEKKLEIMLGDFMKTELP-YFDIC-----ISNTPYQISSPLVFKLINQPR 146

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P P+V 
Sbjct: 147 PP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVE 203

Query: 203 STVIHF 208
           S+V+  
Sbjct: 204 SSVVRL 209


>gi|225680654|gb|EEH18938.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb03]
          Length = 291

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 19/178 (10%)

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           RLE++  D +K D   +F++      I+N PY I + L F  ++ +  P       L+FQ
Sbjct: 17  RLEVLLGDVIKTDL-PYFDV-----CISNTPYQISSPLTFKLLATNPAP---RVCILMFQ 67

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           +E   R+ A+     Y RLSV      +   +  +  + F P P V S+V+  +P  NP 
Sbjct: 68  REFAMRLFAKPGDKLYNRLSVNAQMWARIDHIMKVGKNNFKPPPAVESSVVRIVPK-NPR 126

Query: 216 P-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA----ENLSIED 268
           P    +    + + AF ++ KT+R S   LG  ++L    +E+N R      N+ +ED
Sbjct: 127 PQISYDEWDGLLRIAFVRKNKTIRSSF--LGTTSVLDM--LESNYRTWCAQNNIPVED 180


>gi|242045760|ref|XP_002460751.1| hypothetical protein SORBIDRAFT_02g034340 [Sorghum bicolor]
 gi|241924128|gb|EER97272.1| hypothetical protein SORBIDRAFT_02g034340 [Sorghum bicolor]
          Length = 396

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 23/193 (11%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--- 79
           K  GQ+ L +  +L  I   +    G  V+E+G G GNLT  LL   A  V  +E D   
Sbjct: 36  KRRGQHLLTNPRVLDAIVRRAAIRPGDAVLEVGPGTGNLTVRLLASPAASVAAVEIDPRM 95

Query: 80  -QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLL 134
                   +D+   H  +L +   DA+KVDF +F         ++N+PY I +    +LL
Sbjct: 96  AAAVAARARDLGLAH--KLTVTTGDAMKVDFPEFDA------CVSNIPYAISSPLTAKLL 147

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F           + + TLL Q+E   R+        +  L+         +++ D+S + 
Sbjct: 148 FGSYR-------FRTATLLVQREFARRLVGAPGHGEHNHLATNVRLVAHVSLLMDVSKND 200

Query: 195 FFPSPKVTSTVIH 207
           F P P V S+++ 
Sbjct: 201 FVPVPGVDSSLVE 213


>gi|145611616|ref|XP_368993.2| hypothetical protein MGG_00251 [Magnaporthe oryzae 70-15]
 gi|145018882|gb|EDK03161.1| hypothetical protein MGG_00251 [Magnaporthe oryzae 70-15]
          Length = 364

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+ L +  I ++I + +      TV+E+G G GNL+  +L   A+K+I +E D +
Sbjct: 43  KKDYGQHILKNPGIAEEIVKKAYLRPTDTVLEVGPGTGNLSVKILER-AQKLIAVELDPR 101

Query: 82  FFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L       P   +LE+I  D +K D   F        +I+N PY I + L+F  ++
Sbjct: 102 MGAELTKRVQGKPEQRKLEVILGDVIKADLPPF------DVLISNTPYQISSPLVFKMLA 155

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
               P     + L+FQ+E   R+TA+     Y RL
Sbjct: 156 LPNPP---RCMVLMFQREFSSRLTARPGEALYSRL 187


>gi|8570453|gb|AAF76480.1|AC020622_14 Identical to dimethyladenosine transferase (PFC1) from Arabidopsis
           thaliana gb|AF051326 and contains a Ribosomal RNA
           Adenine Dimethylases PF|00398 domain. This gene may be
           cut off
          Length = 239

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 22/169 (13%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           HS    L+     P+K +GQ+++L+ +I  ++A ++   +G  V+EIG G G+LT +L+ 
Sbjct: 58  HSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNVLIN 117

Query: 68  LGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFF-------NISS 117
           LGA  V+ IEKD    P + D+ S+     ++ +++Q+D +K               +S 
Sbjct: 118 LGA-TVLAIEKD----PHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILETRRLSH 172

Query: 118 P----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           P     ++++NLP+NI T ++   +        +  + LL Q E   R+
Sbjct: 173 PDSALAKVVSNLPFNISTDVVKLLL---PMGDIFSKVVLLLQDEAALRL 218


>gi|16082608|ref|NP_394755.1| rRNA dimethyladenosine transferase [Thermoplasma acidophilum DSM
           1728]
          Length = 239

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 32/259 (12%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           K MGQ FL      ++IAE    L G   TV+EIG G G LT++L+  G  K+  +EKD+
Sbjct: 5   KRMGQVFLQS----RRIAEYEVDLLGEPGTVLEIGPGHGVLTKILVERGF-KITAVEKDR 59

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             F  L+ + + +   L +I  D L +         S   II N+PY+I + ++F     
Sbjct: 60  YIFGELQSLRAAN---LNLINMDFLDM------APGSYDYIIGNIPYSISSPIVFKLYEF 110

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           +     +    ++ QKE  E+I    +     RL V    R    +   +S   F P P+
Sbjct: 111 E-----FRRSVIMVQKEFAEKIAFPDDM---SRLYVNAHVRYNVELKRYVSRKNFNPQPE 162

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           V S ++         P  LE L  +  + F K+RK L  ++  +  E+L        + R
Sbjct: 163 VDSAILVLEKKKYEEPYPLEFLDGVLVQMFSKKRKKL-SNIFDICPEDL-------ADKR 214

Query: 261 AENLSIEDFCRITNILTDN 279
             NL++ +   +  +L D+
Sbjct: 215 PSNLTVSEILGLARLLFDS 233


>gi|71028132|ref|XP_763709.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350663|gb|EAN31426.1| hypothetical protein TP04_0074 [Theileria parva]
          Length = 285

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 107 VDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
           +D+++  N +   + II NLPY I +++L   +    +  + +   +  Q EV ER+ A 
Sbjct: 1   MDYKELSNRVGRKLWIIGNLPYYITSQILMCLLD---YRKYIDRAVITAQLEVAERLVAP 57

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
             S HY  LSVL    T+  ++F +S HVF+P PKV S  I  
Sbjct: 58  VGSKHYSMLSVLIQMFTRPKILFKLSNHVFYPKPKVQSACIKL 100


>gi|260170953|ref|ZP_05757365.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D2]
 gi|265755244|ref|ZP_06090014.1| clindamycin resistance determinant [Bacteroides sp. 3_1_33FAA]
 gi|298482352|ref|ZP_07000538.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D22]
 gi|315919274|ref|ZP_07915514.1| clindamycin resistance determinant [Bacteroides sp. D2]
 gi|317477408|ref|ZP_07936637.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA]
 gi|325299659|ref|YP_004259576.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides salanitronis
           DSM 18170]
 gi|263234386|gb|EEZ19976.1| clindamycin resistance determinant [Bacteroides sp. 3_1_33FAA]
 gi|298271331|gb|EFI12906.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D22]
 gi|313693149|gb|EFS29984.1| clindamycin resistance determinant [Bacteroides sp. D2]
 gi|316906427|gb|EFV28152.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA]
 gi|324319212|gb|ADY37103.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides salanitronis
           DSM 18170]
          Length = 266

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 12/190 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE
Sbjct: 4   KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L+ + S   N         +  DF  F     P ++++N+PY I T  +F  
Sbjct: 63  NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  ++   F    +++ Q E  +++ ++K    Y   +V         +++++ P  FFP
Sbjct: 116 LMFESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFFP 171

Query: 198 SPKVTSTVIH 207
            P V S +++
Sbjct: 172 PPTVKSALLN 181


>gi|224417853|ref|ZP_03655859.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491]
 gi|253827192|ref|ZP_04870077.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491]
 gi|253510598|gb|EES89257.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491]
          Length = 128

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           QKEV  +  A +N   +  LSVL     +A M+F++ P  F P PKVTS V  F+   N 
Sbjct: 3   QKEVALKFCAIQNQSDFSALSVLAQSVGEAKMLFEVPPSAFVPQPKVTSAV--FLIEKNH 60

Query: 215 IPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQAGIETNLRAENLSIED 268
           IP    L  L+++ + AF   RKTL  +L ++  +      L   GI +N R   +   D
Sbjct: 61  IPSSDFLVKLEELLKIAFSAPRKTLFNNLSKVYSKEKIMETLETLGIVSNKRPHEIDTTD 120

Query: 269 FCRITNIL 276
           + R+  +L
Sbjct: 121 YHRLLKLL 128


>gi|255548465|ref|XP_002515289.1| dimethyladenosine transferase, putative [Ricinus communis]
 gi|223545769|gb|EEF47273.1| dimethyladenosine transferase, putative [Ricinus communis]
          Length = 177

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 12/158 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  ++  I + SG      ++EIG G GNLT+ LL  G + V+++     +
Sbjct: 26  KSKGQHILKNPLLVDTIVQKSGIKSTYVILEIGPGTGNLTKKLLEAG-KMVLLLNLILVW 84

Query: 83  FPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           F        +   P  L +IQ D LK D   +++I      +AN+PY I + L F  ++ 
Sbjct: 85  FSSSSAAFRAPLCPIELLVIQGDVLKTDLP-YYDIC-----VANIPYQISSPLTFKLLNH 138

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
               P +    ++FQ+E   R  AQ     Y RLSV T
Sbjct: 139 Q---PSFRCAIIMFQREFAMRFVAQPGDTLYCRLSVNT 173


>gi|10640644|emb|CAC12422.1| rRNA (adenine-N6, N6-)-dimethyltransferase (DIM1, yeast) related
           protein [Thermoplasma acidophilum]
          Length = 233

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 32/257 (12%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           MGQ FL      ++IAE    L G   TV+EIG G G LT++L+  G  K+  +EKD+  
Sbjct: 1   MGQVFLQS----RRIAEYEVDLLGEPGTVLEIGPGHGVLTKILVERGF-KITAVEKDRYI 55

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
           F  L+ + + +   L +I  D L +         S   II N+PY+I + ++F     + 
Sbjct: 56  FGELQSLRAAN---LNLINMDFLDM------APGSYDYIIGNIPYSISSPIVFKLYEFE- 105

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
               +    ++ QKE  E+I    +     RL V    R    +   +S   F P P+V 
Sbjct: 106 ----FRRSVIMVQKEFAEKIAFPDDM---SRLYVNAHVRYNVELKRYVSRKNFNPQPEVD 158

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S ++         P  LE L  +  + F K+RK L  ++  +  E+L        + R  
Sbjct: 159 SAILVLEKKKYEEPYPLEFLDGVLVQMFSKKRKKL-SNIFDICPEDL-------ADKRPS 210

Query: 263 NLSIEDFCRITNILTDN 279
           NL++ +   +  +L D+
Sbjct: 211 NLTVSEILGLARLLFDS 227


>gi|322379602|ref|ZP_08053939.1| dimethyladenosine transferase [Helicobacter suis HS1]
 gi|322380213|ref|ZP_08054444.1| dimethyladenosine transferase [Helicobacter suis HS5]
 gi|321147379|gb|EFX42048.1| dimethyladenosine transferase [Helicobacter suis HS5]
 gi|321147996|gb|EFX42559.1| dimethyladenosine transferase [Helicobacter suis HS1]
          Length = 292

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 52/258 (20%)

Query: 25  MGQNFLLDLNILKKIAES---SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKD 79
           +GQ+FL D + L +I +S       D I ++EIG G G+LT  LL      + ++  E D
Sbjct: 4   LGQHFLHDAHYLGQILQSIPYEHFKDWIQLVEIGVGLGDLTTRLLNKLESPKSLLAYEVD 63

Query: 80  ----QQFFPILKDISSQHPNRLEIIQDDALKVD----------------------FEKFF 113
               Q+ +  L  +S     RLE++  D ++                         E  F
Sbjct: 64  PGLAQRLYHKLGPLS----ERLELVVGDVMQYKGINGADRQVCIQTADRDIRLSVSETGF 119

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P  +++NLPY I T +    I+          + ++ Q EV ++  A  +S +YG 
Sbjct: 120 LCQKPYFLVSNLPYYIATPI----ITRALRDALCIGMAVMVQLEVADKFCAPVHSSNYGA 175

Query: 174 LSVLTG---WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI------PCCLESLKK 224
           LSVL     W+    ++F ++   F P PKV S  +  +    P+         L+SL+ 
Sbjct: 176 LSVLADSLCWQRH--LLFKVNKEAFNPPPKVQSAFMRLLK--KPLVERETKGWDLKSLEH 231

Query: 225 ITQEAFGKRRKTLRQSLK 242
           + +  F   RKTL  +LK
Sbjct: 232 LLKICFKANRKTLYNNLK 249


>gi|284041860|ref|YP_003392200.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM
           14684]
 gi|283946081|gb|ADB48825.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM
           14684]
          Length = 256

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 9/115 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +  + QNF++D   L+ + ++   LD     V+++GAG G +T  L    AR V+ +E+D
Sbjct: 10  RSALAQNFIVDERALRTLLDAV-PLDAARDVVVDLGAGRGAVTAQLAPRAAR-VLAVERD 67

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
             +   L+  +++    +E+++ DA  V F      S+P +++ANLP+N GT L+
Sbjct: 68  PAWAHELRTRAAREWRNVEVVEGDARAVAFP-----SAPFKVVANLPFNAGTGLV 117


>gi|330997743|ref|ZP_08321583.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569940|gb|EGG51696.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella
           xylaniphila YIT 11841]
          Length = 285

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 12/187 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D 
Sbjct: 26  PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 84

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+ + S   N         +  DF  F     P ++++N+PY I T  +F  +  
Sbjct: 85  ALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKILMF 137

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           ++   F    +++ Q E  +++ ++K    Y   +V         +++++ P  FFP P 
Sbjct: 138 ESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFFPPPT 193

Query: 201 VTSTVIH 207
           V S +++
Sbjct: 194 VKSALLN 200


>gi|237713154|ref|ZP_04543635.1| ErmF [Bacteroides sp. D1]
 gi|237721691|ref|ZP_04552172.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_2_4]
 gi|262409455|ref|ZP_06085997.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22]
 gi|229446812|gb|EEO52603.1| ErmF [Bacteroides sp. D1]
 gi|229449487|gb|EEO55278.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_2_4]
 gi|262352667|gb|EEZ01765.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22]
          Length = 266

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 12/189 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P ++ GQ+F +D  ++K   + +      TV++IGAG G +T  LL     KV+ IE
Sbjct: 4   KKLPVRFTGQHFTIDKVLIKDAIKQANITQQDTVLDIGAGKGFITVHLLK-NVNKVVAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D   +   K +  +  N   +     +  DF KF     P ++++N+PY I T  +F  
Sbjct: 63  NDLVLY---KHLCKRFNNAQNV---QVVGCDFRKFTVPLLPFKVVSNIPYGI-TSDIFRI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  D    F    +++ Q E  +++ + K    Y   +V          +++ISP  F P
Sbjct: 116 LMFDNVELFLGG-SIVLQSEPAKKLVSSKV---YNPYTVFYHTFYDLEFLYEISPGSFLP 171

Query: 198 SPKVTSTVI 206
            P V S ++
Sbjct: 172 PPTVKSALL 180


>gi|224750|prf||1112175A transferase,N-Me
          Length = 370

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL D   + +IAE++     + V+E G G G LT+ L    AR+V   E D +
Sbjct: 36  RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPGEGLLTRELADR-ARQVTSYEIDPR 94

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++  S HPN +E++  D L  +         P   +  +PY I T  + +W    
Sbjct: 95  LAKSLREKLSGHPN-IEVVNADFLTAE-----PPPEPFAFVGAIPYGI-TSAIVDWCLE- 146

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
              P  E+ T++ Q E      A+K +  YGR S LT
Sbjct: 147 --APTIETATMVTQLEF-----ARKRTGDYGRWSRLT 176


>gi|196007440|ref|XP_002113586.1| hypothetical protein TRIADDRAFT_57156 [Trichoplax adhaerens]
 gi|190583990|gb|EDV24060.1| hypothetical protein TRIADDRAFT_57156 [Trichoplax adhaerens]
          Length = 330

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 110/285 (38%), Gaps = 39/285 (13%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L++     K+A+S G L    +IE   GPG LT+ LL  G  +++ +E +Q+F  +LK++
Sbjct: 35  LINPQTADKVAKSFGDLHKYVIIEKDPGPGVLTKALLNAGCTQLVALESNQKFLSVLKEL 94

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPI----------------------RIIANLPY 127
            +    RL+    D  K+D    +    P                       R+I     
Sbjct: 95  ENDSDGRLKAYYSDINKLDLIPLYQGYIPPVYQSGDILGHIKPKSWDDDIVGRVIGVANN 154

Query: 128 NIGTRLLFNWI-------SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
            +G R   +++           W   W+ +   + ++    + A   +P YGR++VL+  
Sbjct: 155 TMGHRFTISYLIRLIERSGLHRWGR-WQHIA-YYTEKTARALYAHVGTPIYGRITVLSNI 212

Query: 181 RTKATMMFDISPHVFFPSP-KVTSTVIHFI-----PHLNPIPCCLESLKKITQEAFGKRR 234
               + +       FFP    +    +  I      H       L+ L  I Q+ F  RR
Sbjct: 213 LCNISTLSKDHIDEFFPRGMAIKGNSMELICLETKKHCELSDEALKFLDPILQQVFAARR 272

Query: 235 KTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           + L   L+ +  G   +L +  I     A N+S  DF  +    +
Sbjct: 273 QPLLNRLESIAPGSYTVLEKLKIPPRKCASNMSPMDFVELAEAFS 317


>gi|238060827|ref|ZP_04605536.1| rRNA (adenine-N(6)-)-methyltransferase [Micromonospora sp. ATCC
           39149]
 gi|237882638|gb|EEP71466.1| rRNA (adenine-N(6)-)-methyltransferase [Micromonospora sp. ATCC
           39149]
          Length = 263

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 21/227 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + QNFL D   + +I  ++    G  ++E+GAG G LT+ L     R ++  E D  
Sbjct: 15  RRVLSQNFLADPAAVARIVGAARPAPGDLLLEVGAGRGRLTRALAARCGR-LVAYEVDPV 73

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L    +  P  + + + D L  D         P  ++ N+P+++   ++   ++AD
Sbjct: 74  AAADLAVTCAGLPG-VSLRRADFLAADAP-----DEPFAVVGNIPWSLTAAVVRWCLAAD 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT--GWRTKATMMFDISPHVFF-PS 198
                  S TLL Q E      A+K + H GR S LT   W   A  +    P   F P 
Sbjct: 128 R----LRSATLLTQLEY-----ARKRTGHAGRWSRLTVLTWPEYAWRLAGTVPRTAFRPV 178

Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243
           P+V + ++       P+  P  L + ++  +  FG     +  SL R
Sbjct: 179 PRVDAGILRLDRRAEPLLPPGDLPAYRRFVEVGFGGSGGCVAASLSR 225


>gi|15072727|emb|CAC47934.1| rRNA adenine-N6 methyltransferase [Bacteroides thetaiotaomicron]
          Length = 266

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE
Sbjct: 4   KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L+ + S   N         +  DF  F     P ++++N+PY I T  +F  
Sbjct: 63  NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  +    F    +++ Q E  +++ ++K    Y   +V         +++++ P  F P
Sbjct: 116 LMFENLENFLGG-SIVLQFEPTQKLFSRK---LYNPYTVFCHTFFDLKLVYEVGPESFLP 171

Query: 198 SPKVTSTVIH 207
            P V S +++
Sbjct: 172 PPTVKSALLN 181


>gi|221140091|ref|ZP_03564584.1| rRNA methylase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|14021039|dbj|BAB47663.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|27529888|dbj|BAC53825.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|282167041|gb|ADA81057.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|302750710|gb|ADL64887.1| rRNA adenine N-6-methyltransferase, ErmA [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|302751482|gb|ADL65659.1| rRNA adenine N-6-methyltransferase, ErmA [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 243

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 30/253 (11%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I   +       VIEIG+G G+ T+ L+ + +R VI IE D     + 
Sbjct: 10  QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVIAIEIDGGLCQVT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K+  +   N +++IQ D LK  F K  N     +I  N+PYNI T +    +   T+   
Sbjct: 69  KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDI----VKRITFESQ 119

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            +   L+ +K   +R+   + +     L +L        M+  + P  F P P V S +I
Sbjct: 120 AKYSYLIVEKGFAKRLQNLQRA-----LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174

Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRAE 262
               H  P+         I+++ + K R    K + +  + L  +N   QA    N+   
Sbjct: 175 VLERH-QPL---------ISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNI 224

Query: 263 N-LSIEDFCRITN 274
           N LS E F  I N
Sbjct: 225 NKLSKEQFLSIFN 237


>gi|307091880|gb|ADN28275.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G G LT++LL  GA KV  IEKD++F   L+D  +  P+  E++QDDAL    E
Sbjct: 21  ILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRFATFPD-FELLQDDALAYLKE 78

Query: 111 KFFNISSPIRIIANLPYNIGTRLL 134
           K  + S   ++I+NLPY++ + +L
Sbjct: 79  KDRDWSD-WKLISNLPYSVASSIL 101


>gi|228470626|ref|ZP_04055482.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3]
 gi|288801882|ref|ZP_06407324.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica D18]
 gi|299143035|ref|ZP_07036156.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735]
 gi|319641873|ref|ZP_07996549.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A]
 gi|228307634|gb|EEK16613.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3]
 gi|288335924|gb|EFC74357.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica D18]
 gi|298575486|gb|EFI47371.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735]
 gi|317386505|gb|EFV67408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 266

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE
Sbjct: 4   KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L+ + S   N         +  DF  F     P ++++N+PY I T  +F  
Sbjct: 63  NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  ++   F    +++ Q E  +++ ++K    Y   +V         +++++ P  F P
Sbjct: 116 LMFESLGNFLGG-SIILQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171

Query: 198 SPKVTSTVIH 207
            P V S +++
Sbjct: 172 PPTVKSALLN 181


>gi|416234|dbj|BAA03626.1| kasugamycin dimethyltransferase [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 204

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 21/197 (10%)

Query: 93  HPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           H N LEIIQ D L++D ++  +      I II+N PY I + +LF  +            
Sbjct: 11  HSN-LEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFKTLQI---SDLLTKA 66

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH--- 207
             + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+P PKV S +I    
Sbjct: 67  VFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPIPKVDSAIISLTF 126

Query: 208 ---FIPHLNPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENLLHQAGIETNL 259
              +   +N     +E ++ +    F  +RKT           +      L    I +NL
Sbjct: 127 NNIYKKQINDDKKFIEFVRTL----FNNKRKTILNNLNNIIQNKNKALEYLKMLNISSNL 182

Query: 260 RAENLSIEDFCRITNIL 276
           R E L I+++ ++ N++
Sbjct: 183 RPEQLDIDEYIKLFNLI 199


>gi|115949552|ref|XP_001179159.1| PREDICTED: similar to transcription factor B1, mitochondrial,
           partial [Strongylocentrotus purpuratus]
          Length = 86

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 45/76 (59%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           KI   +G+L G  V E+G GPG +T+ ++  G + ++VIEKD +F P L+ ++     R+
Sbjct: 1   KIVRQAGNLQGAHVCEVGPGPGGITRSIINQGVQDLLVIEKDTRFIPSLEMLTEATEGRV 60

Query: 98  EIIQDDALKVDFEKFF 113
            +  DD L+V+    F
Sbjct: 61  RVACDDILRVNLADAF 76


>gi|255012163|ref|ZP_05284289.1| rRNA adenine N-6-methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313150007|ref|ZP_07812200.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|154893|gb|AAA27431.1| clindamycin resistance determinant (ermFS) [Bacteroides fragilis]
 gi|6979874|gb|AAF34636.1| ErmF [Shuttle vector pHS17]
 gi|313138774|gb|EFR56134.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 266

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE
Sbjct: 4   KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L+ + S   N         +  DF  F     P ++++N+PY I T  +F  
Sbjct: 63  NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  ++   F    +++ Q E  +++ ++K    Y   +V         +++++ P  F P
Sbjct: 116 LMFESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171

Query: 198 SPKVTSTVIH 207
            P V S +++
Sbjct: 172 PPTVKSALLN 181


>gi|7715978|gb|AAF68230.1|AF203972_3 ErmF [Shuttle vector pBA]
          Length = 266

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE
Sbjct: 4   KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L+ + S   N         +  DF  F     P ++++N+PY I T  +F  
Sbjct: 63  NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  ++   F    +++ Q E  +++ ++K    Y   +V         +++++ P  F P
Sbjct: 116 LMFESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171

Query: 198 SPKVTSTVIH 207
            P V S +++
Sbjct: 172 PPTVKSALLN 181


>gi|329944089|ref|ZP_08292348.1| ribosomal RNA adenine dimethylase family protein [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328530819|gb|EGF57675.1| ribosomal RNA adenine dimethylase family protein [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 267

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 14/136 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D +I+  I     + +G  ++EIG G G LT  L  LG R V  IE D +   +
Sbjct: 12  GQNFLTDQSIIATITRLVVATEG-PIVEIGPGDGALTIPLARLG-RPVTAIEIDAR---L 66

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            + +S + P+ ++++ DD L      + ++     ++ NLP++  T +L   + A    P
Sbjct: 67  ARCLSERLPSHVDVVSDDFLIYRLPTYPHV-----LVGNLPFHQTTAMLRRMLHA----P 117

Query: 146 FWESLTLLFQKEVGER 161
            W +  LL Q EV  R
Sbjct: 118 VWTNAILLVQWEVARR 133


>gi|299148760|ref|ZP_07041822.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23]
 gi|301311645|ref|ZP_07217571.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3]
 gi|313886992|ref|ZP_07820692.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|298513521|gb|EFI37408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23]
 gi|300830386|gb|EFK61030.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3]
 gi|312923518|gb|EFR34327.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 266

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE
Sbjct: 4   KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L+ + S   N         +  DF  F     P ++++N+PY I T  +F  
Sbjct: 63  NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  +    F    +++ Q E  +++ ++K    Y   +V         +++++ P  F P
Sbjct: 116 LMFENLENFLGG-SIVLQFEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171

Query: 198 SPKVTSTVIH 207
            P V S +++
Sbjct: 172 PPTVKSALLN 181


>gi|127196|sp|P10337|ERMF_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|150541|gb|AAA98217.1| macrolide-lincosamide-streptogramin B-resistance protein
           [Bacteroides fragilis]
 gi|154890|gb|AAA88675.1| macrolide-lincosamide-streptogramin-resistance protein [Bacteroides
           fragilis]
 gi|853782|emb|CAA60706.1| ermF [Bacteroides sp.]
 gi|1016682|gb|AAB39962.1| rRNA methyltransferase [Cloning vector pFD288]
          Length = 266

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE
Sbjct: 4   KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L+ + S   N         +  DF  F     P ++++N+PY I T  +F  
Sbjct: 63  NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  ++   F    +++ Q E  +++ ++K    Y   +V         +++++ P  F P
Sbjct: 116 LMFESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171

Query: 198 SPKVTSTVIH 207
            P V S +++
Sbjct: 172 PPTVKSALLN 181


>gi|189910634|ref|YP_001962189.1| dimethyladenosine transferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775310|gb|ABZ93611.1| Dimethyladenosine transferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
          Length = 292

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 19/206 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLL 66
           +++      I  +K  GQNFL+D NI++ I   +  L     +T+ EIG G G LT  +L
Sbjct: 11  IQSFFEEKGIRAQKKFGQNFLIDQNIVEYIVNVAKPLFSEGDVTLAEIGIGLGTLTYPIL 70

Query: 67  TLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIAN 124
            L  ++  + E D  +  + KD I  + P+ + +   DAL    E  F+I    + +  N
Sbjct: 71  CL-EKETDLFEIDHAYIQLAKDEILPKFPHAI-LHAGDAL----ENLFHIYPKKVFVFGN 124

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY++ T ++   I        ++    + QKE  ER+  + +S     LSV      + 
Sbjct: 125 LPYHLTTEIINTLIINCR---HFQGGIFMVQKEFAERLVKETSS-----LSVFLSAFCEI 176

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIP 210
             +  +  + FFP PK+ S ++   P
Sbjct: 177 KFLKTVHKNCFFPIPKIHSALLLLTP 202


>gi|116197625|ref|XP_001224624.1| hypothetical protein CHGG_06968 [Chaetomium globosum CBS 148.51]
 gi|88178247|gb|EAQ85715.1| hypothetical protein CHGG_06968 [Chaetomium globosum CBS 148.51]
          Length = 371

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 10/192 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  I   I + +       V+E+G G GN+T   L    +    +E D + 
Sbjct: 36  KDFGQHILKNPGISDAIVDKAYLKPTDVVVEVGPGTGNITVRALDKAKKLTRAVELDPRM 95

Query: 83  FPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +       P   +LE+I  D +K+       +     +I+N PY I + L+F  ++ 
Sbjct: 96  GAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFKMLAM 150

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              P       L+FQ+E  +R+ A+     Y RLSV   +      +  +    F P PK
Sbjct: 151 PNPP---RVAVLMFQREFAKRLVAKPGDALYSRLSVNVNFWATCKHIMKVGKQNFKPPPK 207

Query: 201 VTSTVIHFIPHL 212
           V S V +  P +
Sbjct: 208 VESDVANPYPGV 219


>gi|400267|sp|Q02607|ERMU_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|143943|gb|AAA63165.1| methyltransferase [Bacteroides fragilis]
          Length = 266

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE
Sbjct: 4   KKLPLRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L+ + S   N         +  DF  F     P ++++N+PY I T  +F  
Sbjct: 63  NDTALVEHLRKLFSDARNV------QVVGCDFRNFAVPKFPFKVVSNIPYGI-TSDIFKI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  +    F    +++ Q E  +++ ++K    Y   +V         +++++ P  F P
Sbjct: 116 LMFENLENFLGG-SIVLQFEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLP 171

Query: 198 SPKVTSTVIH 207
            P V S +++
Sbjct: 172 PPTVKSALLN 181


>gi|167044871|gb|ABZ09538.1| putative ribosomal RNA adenine dimethylase [uncultured marine
           crenarchaeote HF4000_APKG8D22]
          Length = 217

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 23/196 (11%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           V+EIG G G L   L    A++V  IEKDQ      K     + N         L +++ 
Sbjct: 17  VLEIGTGYGILIPYLCK-NAKQVFSIEKDQNLHLSAKSNFHDYTN---------LVLEYG 66

Query: 111 KFFNISSPIRI-IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
             FN      + ++NLPY+  +R    W+    +        ++ QKE  E++++  N  
Sbjct: 67  DGFNSDHNFSVFVSNLPYS-KSRFAIEWLLQKKFS----RAVIMVQKEFSEKLSS--NEK 119

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229
           H   +SVL  +  +   + ++    FFP PKV S VI            + ++K+I    
Sbjct: 120 HMA-ISVLANYGFRIKFLMNVKKSNFFPMPKVDSVVILLEQKRIISKVLISTVKRI---- 174

Query: 230 FGKRRKTLRQSLKRLG 245
           F  RRKTL+  LK+ G
Sbjct: 175 FSYRRKTLQNILKQFG 190


>gi|294776564|ref|ZP_06742037.1| ribosomal RNA adenine dimethylase family protein [Bacteroides
           vulgatus PC510]
 gi|294449620|gb|EFG18147.1| ribosomal RNA adenine dimethylase family protein [Bacteroides
           vulgatus PC510]
          Length = 261

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 93/188 (49%), Gaps = 12/188 (6%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D
Sbjct: 1   MPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLRI-ANNVVAIEND 59

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 L+ + S   N ++++  D    +  KF     P ++++N+PY I T  +F  + 
Sbjct: 60  TALVEHLRKLFSDARN-VQVVGCDFRNFEVPKF-----PFKVVSNIPYGI-TSDIFKILM 112

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            ++   F    +++ Q E  +++ ++K    Y   +V         +++++ P  F P P
Sbjct: 113 FESLGNFLGG-SIVLQLEPTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLPPP 168

Query: 200 KVTSTVIH 207
            V S +++
Sbjct: 169 TVKSALLN 176


>gi|1171091|sp|P43433|MYRB_MICGR RecName: Full=Mycinamicin-resistance protein myrB
 gi|286054|dbj|BAA03402.1| myrB [Micromonospora griseorubida]
          Length = 311

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +  +GQNFL+D  +  +IAE   S     V+E+GAG G +T+ L+      V  +E D +
Sbjct: 21  RHELGQNFLVDRGVCTRIAEVVSSTTAHPVLELGAGDGAITRALVAANL-PVTALELDPR 79

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               ++ +     + + ++  D L+ DF  +     P  +++ +P++I T LL   I   
Sbjct: 80  R---VRRLQRTFADGVTVVHGDMLRYDFGPY-----PHHVVSTVPFSITTPLLRRLIGQR 131

Query: 142 TWPPFWESLTLLFQKEVGER 161
               FW +  LL Q EV  +
Sbjct: 132 ----FWHTAVLLVQWEVARK 147


>gi|73993434|ref|XP_535250.2| PREDICTED: similar to Probable dimethyladenosine transferase
           (S-adenosylmethionine-6-N,N-adenosyl(rRNA)
           dimethyltransferase) (18S rRNA dimethylase) (HUSSY-05)
           [Canis familiaris]
          Length = 201

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 12/154 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF- 83
           +GQ+ L +  ++  I + +       V+E+G G GN+T  LL    +KVI  E D +   
Sbjct: 34  IGQHILKNPLVVNSIIDKAALGPTDVVLEVGPGTGNMTVELLE-KVKKVIARELDPRLVA 92

Query: 84  -PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            P  +   +   ++L+++  D LK D   FF+       +ANLPY I +  +F  +    
Sbjct: 93  EPHKRVQGTPLASKLQVLVGDVLKTDLP-FFDAC-----VANLPYQISSPFVFKLL---L 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             PF+    L+FQ+E   R+ A      Y RLS+
Sbjct: 144 HRPFFRCAVLMFQREFALRLVAMPGDKLYCRLSI 177


>gi|313228792|emb|CBY17943.1| unnamed protein product [Oikopleura dioica]
          Length = 193

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 9/115 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  +++ + E +G L   T++EIG G GN+T  LL    +KVI +E D++    
Sbjct: 38  GQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVAE 96

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           ++      P  ++L II  DALK +   FF++     ++ANLPY I + + F  +
Sbjct: 97  VQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLL 145


>gi|307091914|gb|ADN28292.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 119

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D + L  I  ++    G +V+E+G G G +TQ LL  GA KV  +E D+   P+L+   
Sbjct: 1   VDEDALDAILGAAEIQPGESVVEVGPGAGVVTQRLLAAGA-KVTAVELDEALAPLLEKRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             +PN   ++Q D L    E      +P +++ANLPY I
Sbjct: 60  GGNPN-FHLVQGDILHTPREDLLGADAPAKLVANLPYYI 97


>gi|307092006|gb|ADN28338.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 10/112 (8%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV---IEKDQQFFPILKD 88
           D+N+ + I        G  V+EIG G G LT++L+    R+ I+   IEKDQ+    L++
Sbjct: 2   DMNLARWIVGQLRVRSGEHVVEIGPGLGALTELLV----REDILLTLIEKDQRMVKWLRE 57

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +    R+E+   DAL  D    +  S PI+II NLPY + T L+  +ISA
Sbjct: 58  RFAS--PRVELFHIDALDFDLRTLYG-SGPIKIIGNLPYYVATALIAKYISA 106


>gi|307091956|gb|ADN28313.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G G LT++LLT GA KV  IEKD++    L+D  +  PN  E++QDDAL    E
Sbjct: 21  ILEIGPGLGPLTELLLTSGA-KVFAIEKDRRLIDFLRDRFAPFPN-FELLQDDALAYLKE 78

Query: 111 KFFNISSPIRIIANLPYNIGTRLL 134
           K  + +   ++I+NLPY++ + +L
Sbjct: 79  KDRDWTD-WKLISNLPYSVASPIL 101


>gi|195506441|ref|XP_002087207.1| GE14674 [Drosophila yakuba]
 gi|194186922|gb|EDX00506.1| GE14674 [Drosophila yakuba]
          Length = 160

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 13/141 (9%)

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
           +TL FQKEV +RI A        RLSV++   T+  M F I    F P P+V   V+  I
Sbjct: 1   MTLTFQKEVADRICAPVGGEQRCRLSVMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLI 60

Query: 210 PHLNP---IPCCLESLKKITQEAFGKRRKTLRQSLKRL--------GGENLLHQAGIETN 258
           P   P   +P  L  ++++ +  F  R+K  R+    L          + L  +A ++  
Sbjct: 61  PLKRPKTQLPFPL--VERVVRHIFSMRQKYCRRGFGTLLPPEDREDVTQKLFQRAEVQDT 118

Query: 259 LRAENLSIEDFCRITNILTDN 279
           LR+  L++E   R+  + +++
Sbjct: 119 LRSFELTVEQCLRLAEVYSEH 139


>gi|312109334|ref|YP_003987650.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1]
 gi|311214435|gb|ADP73039.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1]
          Length = 284

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 32/193 (16%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           + GQ+ L +  I+  + + +      TV+++GAG G LT   +   A KVI +E D +F 
Sbjct: 20  FSGQHLLHNKRIINDLIQIANLTSNDTVLDLGAGKGALT-FPVAEKAGKVIAVEYDPRFV 78

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT---RLLFNWISA 140
            ILK  +  +PN +++IQ D LK+   K      P  ++A +PY I T   ++L +  + 
Sbjct: 79  EILKKKAEAYPN-IKVIQQDILKLRLPK-----EPFIVVAGIPYAITTPIMKMLLHQPAN 132

Query: 141 DTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMMFD------ISPH 193
                  +   L+ +K   +R T+    +P      ++  WR    M FD      IS  
Sbjct: 133 SL-----QRAVLVMEKGAAKRFTSYPITNP------LILKWR----MWFDLGYVREISRE 177

Query: 194 VFFPSPKVTSTVI 206
            F P PKV S ++
Sbjct: 178 NFSPPPKVDSAIL 190


>gi|1169554|sp|P45439|ERMS_STRFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|153253|gb|AAA26742.1| ribosomal RNA N-methyltransferase [Streptomyces fradiae]
          Length = 319

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 108/251 (43%), Gaps = 30/251 (11%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + QNFL    + +++A       G  ++E+GAG G LT+ L     R ++  E D +
Sbjct: 60  RRELSQNFLARRAVAERVARLVRPAPGGLLLEVGAGRGVLTEALAPYCGR-LVAHEIDPR 118

Query: 82  FFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-IS 139
             P L+D     H   + I   D L     +      P  +  N+PY+  T  + +W + 
Sbjct: 119 LLPALRDRFGGPHHAHVRISGGDFLAAPVPR-----EPFALAGNIPYSR-TAGIVDWALR 172

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT--GW-RTKATMMFDISPHVFF 196
           A T      S T + Q E      A+K +  YGR S+LT   W R +  ++  +S   F 
Sbjct: 173 ART----LTSATFVTQLEY-----ARKRTGDYGRWSLLTVRTWPRHEWRLLGRVSRREFR 223

Query: 197 PSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P P+V S ++       P+     L    ++ +  F     +L  SL+R       H+AG
Sbjct: 224 PVPRVDSGILRIERRERPLLPSAALGDYHRMVELGFSGVGGSLYASLRR------AHRAG 277

Query: 255 -IETNLRAENL 264
            ++   RA  L
Sbjct: 278 PLDAAFRAARL 288


>gi|119558|sp|P09891|ERMA_ARTS3 RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|80586|pir||A24026 erythromycin resistance protein - Arthrobacter sp
 gi|142204|gb|AAA22075.1| erythromycin resistance (ermA) protein [Arthrobacter sp.]
 gi|53794569|gb|AAU93796.1| ribosomal RNA methyltransferase [Aeromicrobium erythreum]
          Length = 340

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 23/199 (11%)

Query: 22  KKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           ++ +GQNFL D   +++IA+++    DG+ V+E G G G LT+ L     R V   E DQ
Sbjct: 32  RRVLGQNFLRDPATIRRIADAADVDPDGL-VVEAGPGEGLLTRELARRAGR-VRTYELDQ 89

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-IS 139
           +    L    +Q  + +E++       DF    +   P + +  +PY I T  + +W ++
Sbjct: 90  RLARRLSTDLAQETS-IEVVH-----ADFLTAPHPEEPFQFVGAIPYGI-TSAIVDWCLT 142

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL--TGWRT-KATMMFDISPHVFF 196
           A    P   S TL+ Q+E      A+K +  YGR + L  T W T +   +  +   +F 
Sbjct: 143 A----PTLTSATLVTQQEF-----ARKRTGDYGRWTALTVTTWPTFEWQYVAKVDRTLFT 193

Query: 197 PSPKVTSTVIHFIPHLNPI 215
           P P+V S ++       P+
Sbjct: 194 PVPRVHSAIMRLRRRPQPL 212


>gi|32479370|ref|NP_862223.1| ErmCX [Corynebacterium striatum]
 gi|709806|gb|AAC95475.1| 23S rRNA methyltransferase [Corynebacterium striatum]
 gi|9945783|gb|AAG03357.1| ErmCX [Corynebacterium striatum]
          Length = 253

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84
           GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           I ++ SS     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    
Sbjct: 70  ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117

Query: 145 PFWESLTLLFQKEVGER 161
           P W    LL Q EV  R
Sbjct: 118 PAWTDAVLLMQWEVARR 134


>gi|15923042|ref|NP_370576.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15924645|ref|NP_372179.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925755|ref|NP_373288.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315]
 gi|15926492|ref|NP_374025.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315]
 gi|15927234|ref|NP_374767.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|15927723|ref|NP_375256.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|15928177|ref|NP_375710.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|49482298|ref|YP_039522.1| rRNA adenine N-6-methyltransferase 1 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49483899|ref|YP_041123.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|57865851|ref|YP_190052.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis
           RP62A]
 gi|57867109|ref|YP_188794.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|57867248|ref|YP_188915.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|148266484|ref|YP_001245427.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|148268136|ref|YP_001247079.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392517|ref|YP_001315192.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150394203|ref|YP_001316878.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156978382|ref|YP_001440641.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|156979973|ref|YP_001442232.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663980|ref|ZP_05143452.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|255006441|ref|ZP_05145042.2| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257428438|ref|ZP_05604836.1| rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431607|ref|ZP_05607975.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257793731|ref|ZP_05642710.1| rRNA methylase Erm [Staphylococcus aureus A9781]
 gi|258422472|ref|ZP_05685383.1| rRNA methylase Erm(A) [Staphylococcus aureus A9719]
 gi|258447341|ref|ZP_05695487.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|258448318|ref|ZP_05696443.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A6224]
 gi|258451920|ref|ZP_05699937.1| rRNA methylase [Staphylococcus aureus A5948]
 gi|258454555|ref|ZP_05702521.1| rRNA methylase Erm(A) [Staphylococcus aureus A5937]
 gi|262053220|ref|ZP_06025373.1| rRNA methylase [Staphylococcus aureus 930918-3]
 gi|282929822|ref|ZP_06336965.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A10102]
 gi|293503531|ref|ZP_06667378.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|294617324|ref|ZP_06696964.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679]
 gi|295407727|ref|ZP_06817512.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8819]
 gi|295429344|ref|ZP_06821965.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297246800|ref|ZP_06930609.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8796]
 gi|304378949|ref|ZP_07361713.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|60389641|sp|Q6GKQ0|ERMA_STAAR RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|60392246|sp|P0A0H1|ERMA_STAAM RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|60392247|sp|P0A0H2|ERMA_STAAN RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|60392248|sp|P0A0H3|ERMA_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|43731|emb|CAA26964.1| S-adenosyl-methionine dependent methylase [Staphylococcus aureus]
 gi|5360835|dbj|BAA82205.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|13699967|dbj|BAB41266.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315]
 gi|13700706|dbj|BAB42003.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315]
 gi|13701452|dbj|BAB42746.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|13701943|dbj|BAB43235.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|13702548|dbj|BAB43689.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|14245819|dbj|BAB56214.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|14247427|dbj|BAB57817.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|28465856|dbj|BAC57474.1| rRNA methylase [Staphylococcus aureus]
 gi|49240427|emb|CAG39078.1| rRNA adenine N-6-methyltransferase 1 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49242028|emb|CAG40727.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|57636509|gb|AAW53297.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis
           RP62A]
 gi|57637767|gb|AAW54555.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|57637906|gb|AAW54694.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|62815916|emb|CAH17569.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|70568192|dbj|BAE06289.1| rRNA methylase [Staphylococcus aureus]
 gi|147739553|gb|ABQ47851.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|147741205|gb|ABQ49503.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149944969|gb|ABR50905.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|149946655|gb|ABR52591.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156720517|dbj|BAF76934.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|156722108|dbj|BAF78525.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|195963189|emb|CAQ43014.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|221327661|gb|ACM17505.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|238773849|dbj|BAH66412.1| rRNA methylase [Staphylococcus aureus]
 gi|255914597|emb|CBA13539.1| adenine methylase [Staphylococcus rostri]
 gi|257275279|gb|EEV06766.1| rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277661|gb|EEV08345.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257787703|gb|EEV26043.1| rRNA methylase Erm [Staphylococcus aureus A9781]
 gi|257841538|gb|EEV65976.1| rRNA methylase Erm(A) [Staphylococcus aureus A9719]
 gi|257853867|gb|EEV76824.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|257858413|gb|EEV81291.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A6224]
 gi|257860403|gb|EEV83234.1| rRNA methylase [Staphylococcus aureus A5948]
 gi|257863282|gb|EEV86044.1| rRNA methylase Erm(A) [Staphylococcus aureus A5937]
 gi|259158881|gb|EEW43972.1| rRNA methylase [Staphylococcus aureus 930918-3]
 gi|269939564|emb|CBI47925.1| rRNA adenine N-6-methyltransferase ErmA1 [Staphylococcus aureus
           subsp. aureus TW20]
 gi|269941138|emb|CBI49525.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282589029|gb|EFB94134.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A10102]
 gi|285815777|gb|ADC36264.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus 04-02981]
 gi|285817338|gb|ADC37825.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus 04-02981]
 gi|291095197|gb|EFE25462.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291596433|gb|EFF27686.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679]
 gi|294967403|gb|EFG43447.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8819]
 gi|295126722|gb|EFG56367.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297176351|gb|EFH35626.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8796]
 gi|299758060|dbj|BAJ10035.1| 23S rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|304342469|gb|EFM08344.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312828687|emb|CBX33529.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycinresistance protein)
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128354|gb|EFT84366.1| rRNA methylase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195559|gb|EFU25946.1| rRNA methylase [Staphylococcus aureus subsp. aureus CGS00]
 gi|329727340|gb|EGG63796.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus 21172]
 gi|224805|prf||1202257A gene ermA
          Length = 243

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 110/253 (43%), Gaps = 30/253 (11%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I   +       VIEIG+G G+ T+ L+ + +R V  IE D     + 
Sbjct: 10  QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K+  +   N +++IQ D LK  F K  N     +I  N+PYNI T +    +   T+   
Sbjct: 69  KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDI----VKRITFESQ 119

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            +   L+ +K   +R+   + +     L +L        M+  + P  F P P V S +I
Sbjct: 120 AKYSYLIVEKGFAKRLQNLQRA-----LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174

Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRAE 262
               H  P+         I+++ + K R    K + +  + L  +N   QA    N+   
Sbjct: 175 VLERH-QPL---------ISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNI 224

Query: 263 N-LSIEDFCRITN 274
           N LS E F  I N
Sbjct: 225 NKLSKEQFLSIFN 237


>gi|14600800|ref|NP_147322.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase
           [Aeropyrum pernix K1]
 gi|27151617|sp|Q9YEM5|RSMA_AERPE RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|5104206|dbj|BAA79521.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase
           [Aeropyrum pernix K1]
          Length = 277

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 17/237 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGI-TVIEIGAGPGNLTQMLL 66
           ++ +L    + P   +GQ+FL+D   + +  +     + +GI   +EIG G G++T    
Sbjct: 17  VREVLGLAGLRPSDRLGQHFLIDDRAVGEFLKPLEKAAAEGIREALEIGPGAGSITLPAA 76

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +  R ++ +E D +    L  ++   P R+ +I  D +          S    + +N P
Sbjct: 77  EVLDR-IVAVELDNRLASALSRLA---PARVAVITGDGVS-----HAAASQAPLVFSNTP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           +N+   +    + A        +  L  Q EV  R+TA+  S  Y RLSVL      A +
Sbjct: 128 FNLSPAI----VEALAVNNRVAAAVLGVQYEVARRMTARPGSRDYSRLSVLVSLVFHAEL 183

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
              + P  ++P P+V + V+              +L ++   AF +R K   + L+R
Sbjct: 184 AGVVRPQAYYPRPQVLTAVVTLRRRRRWRSLYARAL-ELAGCAFTQRNKKASKVLRR 239


>gi|119559|sp|P16898|ERMA_CORDI RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|15778309|gb|AAL07369.1|AF411029_2 ErmX [Propionibacterium acnes]
 gi|40437|emb|CAA35836.1| unnamed protein product [Corynebacterium diphtheriae]
 gi|45564|emb|CAA40590.1| erythromycin methyltransferase [Corynebacterium diphtheriae]
          Length = 253

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84
           GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           I ++ SS     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    
Sbjct: 70  ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117

Query: 145 PFWESLTLLFQKEVGER 161
           P W    LL Q EV  R
Sbjct: 118 PAWTDAVLLMQWEVARR 134


>gi|1806115|emb|CAA92586.1| dimethylase [Kluyveromyces lactis]
          Length = 320

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 13/194 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +       V+EIG G GNLT  +L   ARKV+       +  
Sbjct: 35  LGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILEQ-ARKVVRRGVRSSYGS 93

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
                    P   +LEI+  D +K +   +F++      I+N PY I + L+F  I+   
Sbjct: 94  GRTKRVHGTPVEKKLEILLGDFMKTELP-YFDVC-----ISNTPYQISSPLVFKLINQPK 147

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLS         T +  +  + F P PKV 
Sbjct: 148 PP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPKVE 204

Query: 203 STVIHFIPHLNPIP 216
           S+V+  I   NP P
Sbjct: 205 SSVVR-IEIKNPRP 217


>gi|13517632|gb|AAK28910.1|AF338706_1 ErmX [Corynebacterium jeikeium]
          Length = 284

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 13/136 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTDHKIINSIVDLVKQTSG-PIIEIGPGSGALTHPISHLG-RAITAVEVDAKLAAK 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   ++     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    P
Sbjct: 70  LTKKTAS--ASVEVVHD-----DFLNFPLPATPCVIVGNIPFHLTTAILRKLLHA----P 118

Query: 146 FWESLTLLFQKEVGER 161
            W    LL Q EV  R
Sbjct: 119 AWTDAVLLMQWEVARR 134


>gi|150238|gb|AAA98484.1| erythromycin resistance protein [Plasmid pNG2]
          Length = 284

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84
           GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           I ++ SS     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    
Sbjct: 70  ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117

Query: 145 PFWESLTLLFQKEVGER 161
           P W    LL Q EV  R
Sbjct: 118 PAWTDAVLLMQWEVARR 134


>gi|307091944|gb|ADN28307.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++F   L+D  +
Sbjct: 2   DANQLARIAALGELSTADKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              N  +++QDDAL    EK  + S   ++I+NLPY++ + +L
Sbjct: 61  NLSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPIL 101


>gi|13517628|gb|AAK28907.1|AF338705_1 ErmX [Corynebacterium jeikeium]
          Length = 284

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84
           GQNF  +  I+K I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFFTNHKIIKSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           I ++ SS     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    
Sbjct: 70  ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117

Query: 145 PFWESLTLLFQKEVGER 161
           P W    LL Q EV  R
Sbjct: 118 PAWTDAVLLMQWEVARR 134


>gi|282877321|ref|ZP_06286149.1| ribosomal RNA adenine dimethylase family protein [Prevotella
           buccalis ATCC 35310]
 gi|288926425|ref|ZP_06420346.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17]
 gi|281300560|gb|EFA92901.1| ribosomal RNA adenine dimethylase family protein [Prevotella
           buccalis ATCC 35310]
 gi|288336798|gb|EFC75163.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17]
          Length = 266

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 12/187 (6%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +P +Y GQ+F +D  ++    + +   +  TVI+IGAG G LT  L+      +I IE D
Sbjct: 6   LPVRYTGQHFTIDKVLIDDAIKIAKINESDTVIDIGAGKGFLTVHLVR-QCTNIIAIEND 64

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    ILK+  S + N ++II       DF  +       ++++N+P+ I + +L   + 
Sbjct: 65  KSLLSILKNKFSNNTN-VKIID-----CDFRCYTIPKRNFKVVSNIPFRITSEIL-KSLM 117

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D+   F    +L+ Q E  +++ ++K    Y    V         +M++IS   F P P
Sbjct: 118 FDSVEHFMGG-SLIMQLEPAQKLFSKKVFNPY---IVFYHTFFDLKLMYEISHESFLPPP 173

Query: 200 KVTSTVI 206
           KV S ++
Sbjct: 174 KVKSALL 180


>gi|161528889|ref|YP_001582715.1| ribosomal RNA adenine methylase transferase [Nitrosopumilus
           maritimus SCM1]
 gi|160340190|gb|ABX13277.1| ribosomal RNA adenine methylase transferase [Nitrosopumilus
           maritimus SCM1]
          Length = 234

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 20/234 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +I +K +GQ+FL    I + I   +       V EIG G G LT  LL   A+KVI ++ 
Sbjct: 1   MIKRKLLGQHFLNSQLIAESIVSEAKITKNDIVYEIGTGLGVLTP-LLCKKAKKVISVDA 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+      K+  S   N +    D   K D    F        ++NLPY+  ++    W+
Sbjct: 60  DENLIKKAKNTFSDIDNLVLKSGDGFKKKDTFSVF--------VSNLPYS-KSKDAIEWL 110

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +  T+        ++ QKE  +++ A+  S     +S++         + +++ + F P 
Sbjct: 111 AQRTFSHG----VIMVQKEFAQKLVAK--SKDRKAISIIATHAFDIEKISNVNKNNFSPP 164

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           PKV S V+      +     + ++     E F  RRKT++  LK+   E+ L +
Sbjct: 165 PKVDSVVLKITKKTDMDKTLISTI----NEIFSYRRKTVKNILKQFHKESDLEK 214


>gi|188593342|emb|CAO72206.1| ErmX protein [Bifidobacterium thermophilum]
          Length = 284

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 13/136 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   +S     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    P
Sbjct: 70  LTQETSS--AAVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA----P 118

Query: 146 FWESLTLLFQKEVGER 161
            W    LL Q EV  R
Sbjct: 119 AWTDAVLLMQWEVARR 134


>gi|188593350|emb|CAO72212.1| ErmX protein [Bifidobacterium thermophilum]
          Length = 284

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 13/136 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   +S     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    P
Sbjct: 70  LTQETSS--AAVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA----P 118

Query: 146 FWESLTLLFQKEVGER 161
            W    LL Q EV  R
Sbjct: 119 AWTDAVLLMQWEVARR 134


>gi|3800832|gb|AAC69327.1| rRNA methyltransferase PikR2 [Streptomyces venezuelae]
          Length = 322

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 30/249 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +  +GQNFL+D +++ +I        G  ++EIG G G LT + L+   R +  +E D +
Sbjct: 9   RHELGQNFLVDRSVIDEIDGLVARTKG-PILEIGPGDGALT-LPLSRHGRPITAVELDGR 66

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                + + ++ P  + ++  D L+    +     +P  ++ N+P+++ T ++   + A 
Sbjct: 67  R---AQRLGARTPGHVTVVHHDFLQYPLPR-----NPHVVVGNVPFHLTTAIMRRLLDAQ 118

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT-GWRTKATMMFDISPHV----FF 196
                W +  LL Q EV  R      S      ++LT GW       FD+   V    F 
Sbjct: 119 ----HWHTAVLLVQWEVARRRAGVGGS------TLLTAGW--APWYEFDLHSRVPARAFR 166

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P V   V+       P+   +++ +   ++ F  +   L++ L+R G    + Q  + 
Sbjct: 167 PMPGVDGGVLAIRRRSAPLVGQVKTYQDFVRQVFTGKGNGLKEILRRTG---RISQRDLA 223

Query: 257 TNLRAENLS 265
           T LR   +S
Sbjct: 224 TWLRRNEIS 232


>gi|325120060|emb|CBZ55612.1| putative dimethyladenosine synthase [Neospora caninum Liverpool]
          Length = 195

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 12/130 (9%)

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
           +R+TA+     Y RLSV+        ++  +   VF+P PKV + ++H       +   L
Sbjct: 23  QRLTARPGERQYSRLSVVFALYGSCRIVKKLPSSVFYPVPKVDAALVHIAFRQASLREIL 82

Query: 220 E-----SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE---TNLRAENLSIEDFCR 271
                   + +   AFG+RRK LR SLK +    L H A +     +LR + LS EDF  
Sbjct: 83  RGADPHQFRTVLHAAFGQRRKMLRSSLKPI----LPHPAALPEHFASLRPQQLSPEDFLD 138

Query: 272 ITNILTDNQD 281
           +TN +  + D
Sbjct: 139 LTNAIFSSPD 148


>gi|227487333|ref|ZP_03917649.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227543276|ref|ZP_03973325.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227092759|gb|EEI28071.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227180946|gb|EEI61918.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 284

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84
           GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           I ++ SS     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    
Sbjct: 70  ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117

Query: 145 PFWESLTLLFQKEVGER 161
           P W    LL Q EV  R
Sbjct: 118 PAWTDAVLLMQWEVARR 134


>gi|32470494|ref|NP_863178.1| Erm(X) [Corynebacterium diphtheriae]
 gi|172041601|ref|YP_001801315.1| 23S rRNA adenine N-6-methyltransferase [Corynebacterium urealyticum
           DSM 7109]
 gi|296285265|ref|YP_003657307.1| erythromycin resistance protein [Corynebacterium resistens DSM
           45100]
 gi|300932440|ref|ZP_07147696.1| erythromycin resistance protein [Corynebacterium resistens DSM
           45100]
 gi|20149029|gb|AAM12763.1|AF492560_4 Erm(X) [Corynebacterium diphtheriae]
 gi|109158265|gb|ABG26481.1| ErmX [Corynebacterium urealyticum DSM 7109]
 gi|171852905|emb|CAQ05881.1| 23S rRNA adenine N-6-methyltransferase [Corynebacterium urealyticum
           DSM 7109]
 gi|296172995|emb|CBL95077.1| erythromycin resistance protein [Corynebacterium resistens DSM
           45100]
          Length = 284

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84
           GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           I ++ SS     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    
Sbjct: 70  ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117

Query: 145 PFWESLTLLFQKEVGER 161
           P W    LL Q EV  R
Sbjct: 118 PAWTDAVLLMQWEVARR 134


>gi|188593347|emb|CAO72210.1| ErmX protein [Bifidobacterium thermophilum]
 gi|188593353|emb|CAO72214.1| ErmX protein [Bifidobacterium thermophilum]
          Length = 255

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 13/136 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   +S     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    P
Sbjct: 70  LTQETSS--AAVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA----P 118

Query: 146 FWESLTLLFQKEVGER 161
            W    LL Q EV  R
Sbjct: 119 AWTDAVLLMQWEVARR 134


>gi|168064371|ref|XP_001784136.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664336|gb|EDQ51060.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 274

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 19/165 (11%)

Query: 59  GNLTQMLLTLGARKVIVIEKD-QQFFPILKDI-SSQHPNRLEI-----IQDDALKVDFEK 111
           GNLT  LL +   KVI +E D +    + + +  +   N+L++     IQ   LK +   
Sbjct: 115 GNLTMKLLEVC--KVIAVELDPRMVLEVTRRVQGTPCANKLQVWMLAVIQCYILKTELP- 171

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           +F++      +AN+PY I + + F  +S    PP      +LFQ+E  + + AQ     +
Sbjct: 172 YFDVC-----VANVPYMISSPITFKLLSH---PPLVRCAVILFQEEFAQHLVAQPGDSLF 223

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            RLS  T    +   +  +  +   P PKV S+V+   P  NP+P
Sbjct: 224 CRLSANTQLLARVFHLLKVGKNNLRPPPKVDSSVVRIEPR-NPLP 267


>gi|329314329|gb|AEB88742.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 191

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I   +       VIEIG+G G+ T+ L+ + +R V  IE D     + 
Sbjct: 10  QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K+  +   N +++IQ D LK  F K  N     +I  N+PYNI T    + +   T+   
Sbjct: 69  KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNIST----DIVKRITFESQ 119

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            +   L+ +K   +R+   + +     L +L        M+  + P  F P P V S +I
Sbjct: 120 AKYSYLIVEKGFAKRLQNLQRA-----LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174


>gi|188593358|emb|CAO72217.1| ErmX protein [Bifidobacterium thermophilum]
          Length = 251

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 13/136 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   +S     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    P
Sbjct: 70  LTQETSS--AAVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA----P 118

Query: 146 FWESLTLLFQKEVGER 161
            W    LL Q EV  R
Sbjct: 119 AWTDAVLLMQWEVARR 134


>gi|37359459|gb|AAP74657.1| ribosomal methylase Erm34 [Bacillus clausii]
          Length = 281

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 34/206 (16%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P  + GQ+F+ +  +LK+I + +      TV+E+GAG G LT  +L+  A +V+ +E DQ
Sbjct: 18  PPNFSGQHFMHNKRLLKEIVDKADVSVRDTVLELGAGKGALT-TILSERADRVLAVEYDQ 76

Query: 81  QFFPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT---RLLF 135
           +    L  K + S++   + I+  D +KV        + P  +++N+PY+I T   ++L 
Sbjct: 77  KCIEALQWKLVGSKN---VSILHQDIMKVALP-----TEPFVVVSNIPYSITTAIMKMLL 128

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------ 189
           N           +   ++ +K   +R T+      Y     +  W     M FD      
Sbjct: 129 NNPKNKL-----QRGAIVMEKGAAKRFTSVSPKDAY-----VMAWH----MWFDIHYERG 174

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI 215
           IS   F P PKV S ++  +   +P+
Sbjct: 175 ISRSSFSPPPKVDSALVRIVRKQHPL 200


>gi|188593360|emb|CAO72218.1| ErmX protein [Bifidobacterium animalis]
          Length = 255

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP- 84
           GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +    
Sbjct: 12  GQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAKLAAK 69

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           I ++ SS     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A    
Sbjct: 70  ITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA---- 117

Query: 145 PFWESLTLLFQKEVGER 161
           P W    LL Q EV  R
Sbjct: 118 PAWTDAVLLMQWEVARR 134


>gi|146302849|ref|YP_001190165.1| dimethyladenosine transferase [Metallosphaera sedula DSM 5348]
 gi|145701099|gb|ABP94241.1| dimethyladenosine transferase [Metallosphaera sedula DSM 5348]
          Length = 217

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 31/181 (17%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL+D  I+ +I   +  L  +  IEIG G GNL++ L        + IE D +  P 
Sbjct: 4   SQNFLVDQEIISRIVGYASELRPL--IEIGCGKGNLSRFL-----NPDVCIELDSRLLPF 56

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   S  +P     +Q DA K+   +        +I+++LPY+I +         D++P 
Sbjct: 57  L---SQYNP-----VQGDARKLPVSRG-------QIVSSLPYSITSDFFVEVSRLDSFP- 100

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
               L L+ Q++   +I    + P +  LS L  +  + + +  I P  F P PKV S++
Sbjct: 101 ---RLLLVLQEDFVNKIL---DYPTF--LSFLLNYYYRISELMVIPPKAFRPVPKVFSSL 152

Query: 206 I 206
           +
Sbjct: 153 V 153


>gi|157695030|gb|ABV66104.1| dimethyladenosine transferase [Rickettsiella melolonthae]
          Length = 119

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 7/113 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           ++F++D  IL+ IA          +IEIG G G LT+ LL    + + VIE D+   P L
Sbjct: 2   ESFVID-KILQAIAPHKTD----HMIEIGPGLGALTERLLP-HLKSLTVIELDKDLIPFL 55

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +   +     L + Q D LK+DF          R++ NLPYNI T LLF+ + 
Sbjct: 56  QKKCAA-LGELIVYQGDVLKIDFHTLSKTEQVWRLVGNLPYNISTPLLFHCLE 107


>gi|294868|gb|AAA26492.1| N-6-amino adenine-N-methyl transferase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 370

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL D   + +IAE++     + V+E G   G LT+ L    AR+V   E D +
Sbjct: 36  RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPVEGLLTRELADR-ARQVTSYEIDPR 94

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++  S HPN +E++  D L  +         P   +  +PY I T  + +W    
Sbjct: 95  LAKSLREKLSGHPN-IEVVNADFLTAE-----PPPEPFAFVGAIPYGI-TSAIVDWCLE- 146

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
              P  E+ T++ Q E      A+K +  YGR S LT
Sbjct: 147 --APTIETATMVTQLEF-----ARKRTGDYGRWSRLT 176


>gi|1927195|gb|AAB51440.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces
           viridochromogenes]
          Length = 259

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 19/224 (8%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITV---IEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           + + QNFL D     ++A  +    G+ V   +E+GAG G LT+ LL    R ++  E D
Sbjct: 9   RALSQNFLADRAAAGQLARLAAP-HGLPVPLLLEVGAGKGALTE-LLAPRCRSLLAYEID 66

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +  P+L+   +  P+ + ++ +D L+    +     +P  +  N+P++    ++   + 
Sbjct: 67  PRLVPVLRSRFADAPH-VRVLGEDFLRARAPR-----TPFSVAGNVPFSRTAAVVAWCLR 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A    P     TLL Q E   R T    S  + RL+VLT  R +  +   +    F P P
Sbjct: 121 A----PHLTDATLLTQLEYARRRTGDYGS--WTRLTVLTWPRHEWRLAGRVGRRSFRPVP 174

Query: 200 KVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL 241
           +V + ++       P+  P      +++    F     +L  SL
Sbjct: 175 RVDAGIVRIERRRTPLLAPGADAGWRELVDLGFSGAGGSLHASL 218


>gi|73487015|gb|AAZ76628.1| Erm(40)wo [Mycobacterium wolinskyi]
          Length = 246

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 27/254 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D  ++  I E      G  ++EIGAG G LT  L  LG R +  IE D +
Sbjct: 8   RHEFGQNFLCDRRVVADIVEIISRTTG-PIVEIGAGDGALTVPLQWLG-RPLTAIEIDSR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +S           + +  DF +F    +P  I+ NLP+++ T +L   +   
Sbjct: 66  RAERLAGHTSA----------EVVATDFLRFRLPRTPHVIVGNLPFHLTTAMLRRLLHG- 114

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRT--KATMMFDISPHVFFPS 198
              P W    LL Q EV  R          G  +++T  W    +  +   +S + F P 
Sbjct: 115 ---PGWTDAVLLVQWEVARRRAG------VGGATMMTAQWWPWFEFGLARKVSANAFRPR 165

Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P V + ++      +P+         + +  + F  R + + Q + R    + L   GI 
Sbjct: 166 PTVDAGLLTITRRAHPMIDAADRRRYQALVHQVFTGRGRGIAQIIGRRVPRHWLRDNGIN 225

Query: 257 TNLRAENLSIEDFC 270
                ++L+   + 
Sbjct: 226 PAALPKDLTATQWA 239


>gi|115400783|ref|XP_001215980.1| hypothetical protein ATEG_06802 [Aspergillus terreus NIH2624]
 gi|114191646|gb|EAU33346.1| hypothetical protein ATEG_06802 [Aspergillus terreus NIH2624]
          Length = 287

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 15/176 (8%)

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           RL++I  D +K +   +F++      I+N PY I + L F  ++    P       L+FQ
Sbjct: 17  RLDVILGDFMKTELP-YFDVC-----ISNTPYQISSPLTFKLLATTPAP---RVCILMFQ 67

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           +E   R+ A+     Y RLSV      K   +  +  + F P P V S+V+  +P  NP 
Sbjct: 68  REFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPLVDSSVVRLVPK-NPR 126

Query: 216 P-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--QAGIETNLRAENLSIED 268
           P    E    + +  F ++ KT+R S   LG   ++   +A   T     ++ +ED
Sbjct: 127 PQINYEEWDGLLRICFVRKNKTIRSSF--LGKHTVMDLLEANYRTWCAQNDIPVED 180


>gi|260577655|ref|ZP_05845591.1| mycinamicin-resistance protein MyrB [Corynebacterium jeikeium ATCC
           43734]
 gi|258604201|gb|EEW17442.1| mycinamicin-resistance protein MyrB [Corynebacterium jeikeium ATCC
           43734]
          Length = 284

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 21/140 (15%)

Query: 26  GQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           GQNFL D  I+  I     ESSG      +IEIG G G LT  L  LG R +  +E D +
Sbjct: 12  GQNFLTDHKIINSIVDLVKESSGP-----IIEIGPGSGALTHPLSRLG-RPITAVEVDAK 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   ++     +E++       DF  F   ++P  I+ N+P+++ T +L   + A 
Sbjct: 66  LAAKLTKKTAS--ASVEVVHG-----DFLNFPLPATPCVIVGNIPFHLTTAILRELLHA- 117

Query: 142 TWPPFWESLTLLFQKEVGER 161
              P W    LL Q EV  R
Sbjct: 118 ---PAWTDAVLLMQWEVARR 134


>gi|73487007|gb|AAZ76622.1| Erm(39)ho [Mycobacterium houstonense]
          Length = 246

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 34/251 (13%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D  ++  IA+      G  ++E+GAG G LT  L  L  R +  IE D++
Sbjct: 8   RHETGQNFLCDRRVVADIADIVARTTG-PIVEVGAGDGALTLPLQRLN-RPLTAIEIDRR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L + +S           + +  DF ++    +P  ++ NLP+++ T +L   + A 
Sbjct: 66  RATRLAERTSA----------EVVSADFLRYRLPRTPHVVVGNLPFHLTTAILRRLLHA- 114

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG----WRTKATMMFDISPHVFFP 197
              P W    L+ Q EV  R  A       G  +++T     W  +  +   IS   F P
Sbjct: 115 ---PGWTDAVLVVQWEVARRRAA------VGGATMMTAQWWPW-FEFGLARKISAESFRP 164

Query: 198 SPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSL-----KRLGGENLL 250
            P V + ++       P+      +  + +    F  R + L Q L     +R  G N +
Sbjct: 165 RPSVDAGLLTITRRTEPLVDWADRQRYQSLVHRVFTGRGRGLGQILRPHVDRRWLGANRV 224

Query: 251 HQAGIETNLRA 261
           H   +   L A
Sbjct: 225 HPHALPRELTA 235


>gi|307091974|gb|ADN28322.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 4/114 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++    L+D  +
Sbjct: 2   DANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
              N L+++QDDAL    EK  + S   ++++NLPY++ + +L   ++  + PP
Sbjct: 61  TFSN-LDLLQDDALAYLKEKDRDWSD-WKLVSNLPYSVASPILVE-LALGSHPP 111


>gi|307091948|gb|ADN28309.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G G LT++LL  GA KV  IEKD++F   L+D  +   +  E++QDDAL    E
Sbjct: 21  ILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRFATFSD-FELLQDDALAYLKE 78

Query: 111 KFFNISSPIRIIANLPYNIGTRLL 134
           K  + S   ++I+NLPY++ + +L
Sbjct: 79  KDRDWSD-WKLISNLPYSVASPIL 101


>gi|291402058|ref|XP_002717677.1| PREDICTED: transcription factor B2, mitochondrial [Oryctolagus
           cuniculus]
          Length = 397

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLD--LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +  +++ PK+Y+    L +  + IL+   +   SL     +E   GPG LTQ LL  GA 
Sbjct: 61  VCKHRLDPKRYVSSRGLAETLVQILRGSQKDPRSL----FLECNPGPGVLTQALLETGA- 115

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV+ +E D+ F P L+ + +    +LE++  D  K+D  K   +  PI I   L  N+G 
Sbjct: 116 KVVALESDRNFIPRLESLGNNLDGKLEVVYCDFFKLDPRKCGLVRPPIMISHVLFQNLGI 175

Query: 132 RLL 134
           + L
Sbjct: 176 KAL 178


>gi|56965270|ref|YP_177002.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16]
 gi|56911514|dbj|BAD66041.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16]
          Length = 281

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 34/206 (16%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P  + GQ+F+ +  +LK+I + +      TV+E+GAG G LT  +L+  A +V+ +E DQ
Sbjct: 18  PPNFSGQHFMHNKRLLKEIVDKADVSVRDTVLELGAGKGALT-TILSERADRVLAVEFDQ 76

Query: 81  QFFPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT---RLLF 135
           +    L  K + S++   + I+  D +KV        + P  +++N+PY I T   ++L 
Sbjct: 77  KCVEALQWKLVGSKN---VSILHQDIMKVTLP-----TEPFVVVSNIPYAITTAIMKMLL 128

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------ 189
           N           +   ++ +K   +R T+      Y     +  W     M FD      
Sbjct: 129 NNPKNKL-----QRGAIVMEKGAAKRFTSVSPKDAY-----VMAWH----MWFDIHYERG 174

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI 215
           IS   F P PKV S ++  +   +P+
Sbjct: 175 ISRSAFSPPPKVDSALVRIVRKQHPL 200


>gi|326513775|dbj|BAJ87906.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 227

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +L+  + +++  ++G   G  V+EIG G G+LT  LL      V+ +EKD+    +++D 
Sbjct: 1   MLNARVNEELVAAAGVEVGDVVLEIGPGTGSLTAALLAA-GATVVAVEKDKHMATLVRD- 58

Query: 90  SSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRIIANLPYNIGTRLLFNWISA 140
                 +L++I++D  K      F               +++ANLP+N+ T ++   +  
Sbjct: 59  RFGSTEQLKVIEEDITKFHVHSHFLPILDEKSRGTKKYAKVVANLPFNVSTEVVKQILPM 118

Query: 141 DTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                 +  + L+ Q E   R+  A   +P Y  ++V   + ++    F +    FFP P
Sbjct: 119 GD---VFSVMVLMLQDEAALRLANASIQTPEYRPINVFVNFYSEPEYKFKVERANFFPQP 175

Query: 200 KVTSTVIHF 208
            V   VI F
Sbjct: 176 TVDGGVIRF 184


>gi|307091942|gb|ADN28306.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 71/121 (58%), Gaps = 5/121 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++I ++    DG  ++EIG G G LT +LL   A++V+ +EKD +    L+    
Sbjct: 2   DHNQLQRIVQAGDVKDGDLILEIGPGLGPLTSLLLG-HAKRVLAVEKDPRLVTFLRKKFE 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
           +  N LE++  DAL  ++ +  +  +  ++I+NLPY++G+ +L + ++    PP   ++T
Sbjct: 61  KEAN-LELVHADAL--EYLRAPHDWTNWKMISNLPYSVGSPILVD-LANTAKPPERMTVT 116

Query: 152 L 152
           L
Sbjct: 117 L 117


>gi|307091876|gb|ADN28273.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N+ + I +  G   G  ++EIG G G LT  L    AR + ++EKD +    L     
Sbjct: 2   DKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDAR-LTLVEKDGRMIQWLG--QQ 58

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +R+E+   DAL  D    +    P+RII NLPY + T L+  + +A
Sbjct: 59  FRSDRVELFHIDALDFDLRTLYG-RGPVRIIGNLPYYVSTPLIAKYTAA 106


>gi|307091980|gb|ADN28325.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D + L+ IA +  +  G T++EIG G G LT +L   G   +I IE D+     L++  
Sbjct: 1   VDRSALEAIAGAVVAGSGDTIVEIGPGRGALTDILAARG-NPLIAIEIDRALSEKLRERY 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             +P R+ I++ D L+ D       + P  ++ N+PY I T +LF+ +     PPF  S 
Sbjct: 60  GSNP-RVTIVERDVLETDVAAL--AAGPFVVVGNVPYYITTPILFHVLR----PPFPRSA 112

Query: 151 TLL 153
             L
Sbjct: 113 VFL 115


>gi|307091958|gb|ADN28314.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N + +IA          ++EIG G G LT+ LL  GA KV+ IEKD++    L+D  +
Sbjct: 2   DANQIARIAALGELSASDKILEIGTGLGPLTEFLLAYGA-KVLAIEKDRRLVDFLRDRFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
              N  +++QDDAL    EK  + S   ++I+NLPY++ + +L   ++  + PP
Sbjct: 61  TFSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPILVE-LALGSHPP 111


>gi|307091902|gb|ADN28286.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 3/113 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++IA       G  V+EIG G G LT +LL  GA +V+ IEKDQ+   +L++  +
Sbjct: 2   DQNQLQRIAAFGELKPGDRVLEIGPGLGPLTAVLLAGGA-QVLAIEKDQRLCEVLRERFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
             P R E++  DAL+   ++     +  ++I+NLP+++ + LL     A+  P
Sbjct: 61  AEP-RFELLHADALEF-LKRERRDWTGWKLISNLPFSVASPLLVEMAFAEKPP 111


>gi|307091964|gb|ADN28317.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++F   L+D  +
Sbjct: 2   DANQLARIAVLGELSASDKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              N  +++QDDAL    EK  +     ++I+NLPY++ + +L
Sbjct: 61  TFSN-FDLLQDDALAYLREKDRDWGD-WKLISNLPYSVASPIL 101


>gi|307091938|gb|ADN28304.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307091976|gb|ADN28323.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N+ + I +  G   G  ++EIG G G LT  L    AR + ++EKD +    L     
Sbjct: 2   DKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDAR-LTLVEKDGRMIQWLG--QQ 58

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +R+E+   DAL  D    +    P+RII NLPY + T L+  + +A
Sbjct: 59  FRSDRVELFHIDALDFDLRTLYG-RGPVRIIGNLPYYVSTPLIAKYTAA 106


>gi|68536522|ref|YP_251227.1| 23S rRNA methyltransferase [Corynebacterium jeikeium K411]
 gi|68264121|emb|CAI37609.1| 23S rRNA methyltransferase [Corynebacterium jeikeium K411]
          Length = 284

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D  I+  I +      G  +IEIG G G LT  L  LG R +  +E D +    
Sbjct: 12  GQNFLTDHKIINSIVDLVKQSSG-PIIEIGPGSGALTHPLSRLG-RPITAVEVDAKLAAK 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   ++     +E++       DF  F   ++P  I+ N+P+++ T +L   + A    P
Sbjct: 70  LTKKTAS--ASVEVVHG-----DFLNFPLPATPCVIVGNIPFHLTTAILRKLLHA----P 118

Query: 146 FWESLTLLFQKEVGER 161
            W    LL Q EV  R
Sbjct: 119 AWTDAVLLMQWEVARR 134


>gi|159232386|emb|CAM96571.1| 23S rRNA methyltransferase [Streptomyces ambofaciens]
          Length = 282

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 111/269 (41%), Gaps = 43/269 (15%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDG-----------ITVIEIGAGPGNLTQMLLTLGA 70
           ++  GQNF             S  LDG           +  +EIGAG G +T++L + G 
Sbjct: 23  RREWGQNFF---RTAAAACRFSAQLDGSDTIPPDSPNDLMTVEIGAGSGRVTKVLASPGT 79

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
             ++ +E D ++    + ++++    + ++ +D L +          P+R+I NLP+  G
Sbjct: 80  -PLLAVEIDPRW---ARRLAAESLPDVTVVNEDFLTLQLP-----GQPVRLIGNLPFVTG 130

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKE-VGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           TR+L   +  D  P        L Q+E VG+R  A      +G       W  +    FD
Sbjct: 131 TRMLRRCL--DMGPARMRQGVFLLQREYVGKRTGA------WGGNLFNAQW--EPWYSFD 180

Query: 190 ----ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLK- 242
                S   F P P+  +  +   PH  P     E  + ++  Q  F   + T+  + + 
Sbjct: 181 RGLAFSRQDFTPVPRADTQTLMVAPHRRPSVPWREKAAYQRFVQRVFDTGQMTVGDAARK 240

Query: 243 --RLGGENLLHQAGIETNLRAENLSIEDF 269
             R G    +  AG+    R ++L++ ++
Sbjct: 241 VLRRGHAQFVRGAGVRPADRVKDLTVPEW 269


>gi|188593355|emb|CAO72215.1| ErmX protein [Bifidobacterium thermophilum]
          Length = 284

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E + +
Sbjct: 8   RHEYGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVNAK 65

Query: 82  FFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               I ++ SS     +E++ D     DF  F   ++P  I+ N+P+++ T +L   + A
Sbjct: 66  LAAKITQETSSA---AVEVVHD-----DFLNFRLPATPCVIVGNIPFHLTTAILRKLLHA 117

Query: 141 DTWPPFWESLTLLFQKEVGER 161
               P W    LL Q EV  R
Sbjct: 118 ----PAWTDAVLLMQWEVARR 134


>gi|329930026|ref|ZP_08283651.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. HGF5]
 gi|328935425|gb|EGG31897.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. HGF5]
          Length = 288

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 34/224 (15%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P  +  Q+ L+   ++  + + +      TV++IGAG G LT + L   A  V+ IE D 
Sbjct: 15  PSNFSAQHLLISKRLIHDMIDLAQIRSTDTVLDIGAGTGALT-LPLAEKAGHVLAIETDP 73

Query: 81  QFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            F   L    KD S+     + + Q D L++   +     +P  ++AN+PY+I T ++  
Sbjct: 74  AFVDKLLGKMKDSSN-----IRVKQSDFLEIPLPR-----NPFAVVANIPYSITTPIMGK 123

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMMFDI----- 190
            +     P   +   LL +    +R TA     P       +  WR    M +DI     
Sbjct: 124 LLECPGLP--LQRAALLVEMGASKRFTAVPIQDPR------ILSWR----MQYDIRLVRT 171

Query: 191 -SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233
            SPH F P P+V S ++       P+       K     A+G R
Sbjct: 172 VSPHHFAPPPQVDSAILTIHRRKKPLIAASSQPKFTALAAYGLR 215


>gi|322779454|gb|EFZ09646.1| hypothetical protein SINV_04081 [Solenopsis invicta]
          Length = 148

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           +FQ+E  ER+ A+     Y RLS+ T    +  M+  +  + F P PKV S V+   P  
Sbjct: 1   MFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESNVVRIEPRN 60

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P P   +    +T+ AF ++ KTL  + K+     +L +
Sbjct: 61  PPPPINYQEWDSLTRIAFMRKNKTLSAAFKQTTVVTMLEK 100


>gi|258411260|ref|ZP_05681537.1| rRNA methylase Erm [Staphylococcus aureus A9763]
 gi|257839989|gb|EEV64456.1| rRNA methylase Erm [Staphylococcus aureus A9763]
          Length = 221

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 30/229 (13%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           VIEIG+G G+ T+ L+ + +R V  IE D     + K+  +   N +++IQ D LK  F 
Sbjct: 12  VIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVTKEAVNPSEN-IKVIQTDILKFSFP 69

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
           K  N     +I  N+PYNI T +    +   T+    +   L+ +K   +R+   + +  
Sbjct: 70  KHIN----YKIYGNIPYNISTDI----VKRITFESQAKYSYLIVEKGFAKRLQNLQRA-- 119

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF 230
              L +L        M+  + P  F P P V S +I    H  P+         I+++ +
Sbjct: 120 ---LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERH-QPL---------ISKKDY 166

Query: 231 GKRR----KTLRQSLKRLGGENLLHQAGIETNLRAEN-LSIEDFCRITN 274
            K R    K + +  + L  +N   QA    N+   N LS E F  I N
Sbjct: 167 KKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFN 215


>gi|271965962|ref|YP_003340158.1| rRNA (adenine-N(6)-)-methyltransferase [Streptosporangium roseum
           DSM 43021]
 gi|270509137|gb|ACZ87415.1| rRNA (adenine-N(6)-)-methyltransferase [Streptosporangium roseum
           DSM 43021]
          Length = 275

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 31/193 (16%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80
           ++ + QNF++D + + +I E++G  D   V+E GAG G LT+ L  T G  +V+  E D 
Sbjct: 30  RRTLSQNFIVDPDAVARIVEAAGPHD--LVLEPGAGEGVLTRALAGTCG--QVVGYEVD- 84

Query: 81  QFFPILKD---ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
              P+L       ++   R+ +++ D L     +      P  ++ N+PY+I ++++   
Sbjct: 85  ---PLLAGRLAARTRDDARIRVVRGDFLAARAPR-----EPFAVVGNIPYSITSKIVDWC 136

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT----GWRTKATMMFDISPH 193
           + A    P   S TL  Q E      A+K +  +GR S+LT     W +   ++  +S  
Sbjct: 137 LRA----PDLTSATLTTQLEY-----ARKRTGDFGRWSMLTVQTWPWYSW-ELLGHLSRE 186

Query: 194 VFFPSPKVTSTVI 206
           VF P P V S ++
Sbjct: 187 VFRPIPAVDSAIL 199


>gi|284518868|gb|ADB92556.1| Ccr1 [Streptomyces caelestis]
          Length = 341

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 23/255 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNF      +++     G+++G+  +EIG G G +T+ L   G   + V+E D Q
Sbjct: 58  RRVWGQNFFKSKAAVRRFTAQIGAVEGLPTVEIGPGSGMITKELAKSG-EPLTVVEIDDQ 116

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +  +L +   + P+ + ++ +D L    E     +   R++ NLP+   T +L   +   
Sbjct: 117 WARLLAE---ELPSHVTMVNEDFLSWGPE-----TECFRMVGNLPFGASTEILRTCLGYG 168

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT--MMFDISPHVFFPSP 199
             P  +     L Q E      A+K +  +G       W    T  M  +   H F P P
Sbjct: 169 --PDRFLEGVFLVQLEF-----ARKRAGAWGGNLFNAQWSPWFTFHMGHEFPRHCFRPVP 221

Query: 200 KVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQAG 254
           K  +  +   P  +P+    E  + +++    F   + T+ ++ +R+      + L +A 
Sbjct: 222 KTDTATLFVDPRRDPLLPWRERVAYQELVSAVFNTGQLTVGEAAQRVNVRKPADWLRRAE 281

Query: 255 IETNLRAENLSIEDF 269
           +    R ++L  ED+
Sbjct: 282 VFPETRVKDLDAEDW 296


>gi|296138265|ref|YP_003645508.1| rRNA (adenine-N(6)-)-methyltransferase [Tsukamurella paurometabola
           DSM 20162]
 gi|296026399|gb|ADG77169.1| rRNA (adenine-N(6)-)-methyltransferase [Tsukamurella paurometabola
           DSM 20162]
          Length = 253

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 23/140 (16%)

Query: 26  GQNFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           GQNFL D     +IL  IAES G      ++EIG G G LT  L  LG R + V+E D++
Sbjct: 12  GQNFLTDRRIIASILNIIAESDGP-----ILEIGPGAGALTVPLANLG-RPLTVVEIDEK 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +          H  R   +    +  DF +      P  ++ NLP+++ T +L   + A 
Sbjct: 66  YV---------HALRRTRLDATIVHGDFLRHRLPDEPATVVGNLPFHLTTAILRKLLHA- 115

Query: 142 TWPPFWESLTLLFQKEVGER 161
              P W    L+ Q EV  R
Sbjct: 116 ---PHWTDAVLITQWEVARR 132


>gi|307092002|gb|ADN28336.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++    L+D  +
Sbjct: 2   DANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              N  +++QDDAL    EK  + S   ++++NLPY++ + +L
Sbjct: 61  TFSN-FDLLQDDALAYLKEKDRDWSD-WKLVSNLPYSVASPIL 101


>gi|155965924|gb|ABU40944.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 193

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           VIEIG+G G+ T+ L+ + +R V  IE D+    + K+  +   N +++IQ D LK  F 
Sbjct: 16  VIEIGSGKGHFTKELVKM-SRSVTAIEIDEGLCQVTKEAVNPSEN-IKVIQTDILKFSFP 73

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
           K  N     +I  N+PYNI T +    +   T+    +   L+ +K   +R+   + +  
Sbjct: 74  KHIN----YKIYGNIPYNISTDI----VKRITFESQAKYSYLIVEKGFAKRLQNLQRA-- 123

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
              L +L        M+  + P  F P P V S +I
Sbjct: 124 ---LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 156


>gi|307103105|gb|EFN51369.1| hypothetical protein CHLNCDRAFT_141143 [Chlorella variabilis]
          Length = 388

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 17/164 (10%)

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTG 179
           ++ANLPY I    L   +          +L  + Q EVG R+T +   +  +  ++++T 
Sbjct: 198 VVANLPYYITKDCLAQMLPLGG---RVAALYFMLQHEVGVRLTQEDPGASDWRAMNLVTQ 254

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP------IPCCLESLKKITQEAFGKR 233
           + ++A  +F+I    + PSPKV   V+ F   L P      +P   + LK I ++AF +R
Sbjct: 255 YYSQAQYLFEIDRRKYHPSPKVNGAVVRFA--LTPPSQRLAVPSEPDFLKLI-KKAFSQR 311

Query: 234 RKTLRQSLKRLGGENLL----HQAGIETNLRAENLSIEDFCRIT 273
           RK +R +L+ L     +      AG+  + RA++L++  F  + 
Sbjct: 312 RKVVRNALRPLYEPGQVAAALAAAGLSEDARAQDLTLLQFGELA 355


>gi|13541146|ref|NP_110834.1| rRNA dimethyladenosine transferase [Thermoplasma volcanium GSS1]
 gi|14324532|dbj|BAB59459.1| dimethyladenosine transferase [Thermoplasma volcanium GSS1]
          Length = 237

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 98/221 (44%), Gaps = 30/221 (13%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           K +GQ FL      ++IAE    L     G +V+EIG G G LT +LL  G   V  +EK
Sbjct: 5   KRLGQVFLRS----RRIAEYEVDLLNGHPGDSVLEIGPGHGILTSILLDRGYY-VTAVEK 59

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D+  +  L  I +++ N   ++ +     K DF           II N+PY I + ++F 
Sbjct: 60  DRFVYNELLSIKNKNLNLFNMDFLDMPPQKYDF-----------IIGNIPYYISSDVIFK 108

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
               +     + +  ++ QKE  +++T  K+S    RL V    R +  +   +    F 
Sbjct: 109 LYDFE-----FSASVIMVQKEFADKLTNVKDS---SRLYVNAYVRYEIDLKRYVGRKNFN 160

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           P PKV S ++        +   L+ L    +  F K+RK +
Sbjct: 161 PQPKVDSAILLLKKKKINLDIPLDYLDSKLKVMFSKKRKMI 201


>gi|289670945|ref|ZP_06492020.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 89

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGEN 248
           P  F P PKV S V+  +P  +P    +   ++   + +  FG+RRKTLR +L  +    
Sbjct: 1   PGAFRPPPKVDSAVVRLVPR-DPATVQINDRRRFADVVRAGFGQRRKTLRNALSTVCEPA 59

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNI 275
               A +  + RAE L + DF R+ N+
Sbjct: 60  HFEAAQVRPDARAEQLEVADFIRLANV 86


>gi|73486998|gb|AAZ76615.1| Erm(39)bo [Mycobacterium boenickei]
          Length = 246

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 103/254 (40%), Gaps = 27/254 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D  ++  I +      G  ++EIGAG G LT  L  L  R++  IE D+ 
Sbjct: 8   RHEYGQNFLCDRRVVADIVKIVSHTTG-PIVEIGAGDGALTLPLQRLN-RQLTAIEIDRX 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L D +S           + +  DF ++   ++P  ++ NLP+++ T  L       
Sbjct: 66  RARRLADRTSA----------EVVGADFLQYRLPTTPHVVVGNLPFHLTTAXLRRLXHG- 114

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRT--KATMMFDISPHVFFPS 198
              P W    LL Q EV  R          G  +++T  W    + ++   +S   F P 
Sbjct: 115 ---PGWTDAVLLMQWEVARRXAG------VGGATMMTAQWWPWFEFSLAXKVSADAFRPR 165

Query: 199 PKVTSTVIHFIPHLNP-IPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P V + ++       P +P       + +  E F  R + L Q L+R      L   GI 
Sbjct: 166 PGVDAGLLTITRRREPLVPTADRRRYQALAHEVFTGRGRGLAQILRRHVDRRWLQANGIH 225

Query: 257 TNLRAENLSIEDFC 270
            +    +LS + + 
Sbjct: 226 PSALPRDLSAQQWA 239


>gi|34733387|gb|AAN86837.2| Erm(38) [Mycobacterium smegmatis]
          Length = 386

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 6/143 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +  +GQNFL D  ++  I E     +G  +IEIGAG G LT  L  L AR +  +E D +
Sbjct: 8   RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTAVEVDAR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +++          + +  DF ++    SP  ++ NLP+++ T +L   +   
Sbjct: 66  RARRLAQRTARSAPGPASRPTEVVAADFLRYPLPRSPHVVVGNLPFHLTTAILRRLLHG- 124

Query: 142 TWPPFWESLTLLFQKEVGERITA 164
              P W +  LL Q EV  R  A
Sbjct: 125 ---PGWTTAVLLMQWEVARRRAA 144


>gi|118471619|ref|YP_886024.1| ribosomal RNA adenine dimethylase family protein [Mycobacterium
           smegmatis str. MC2 155]
 gi|118172906|gb|ABK73802.1| ribosomal RNA adenine dimethylase family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 386

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 6/143 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +  +GQNFL D  ++  I E     +G  +IEIGAG G LT  L  L AR +  +E D +
Sbjct: 8   RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTAVEVDAR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +++          + +  DF ++    SP  ++ NLP+++ T +L   +   
Sbjct: 66  RARRLAQRTARSAPGPASRPTEVVAADFLRYPLPRSPHVVVGNLPFHLTTAILRRLLHG- 124

Query: 142 TWPPFWESLTLLFQKEVGERITA 164
              P W +  LL Q EV  R  A
Sbjct: 125 ---PGWTTAVLLMQWEVARRRAA 144


>gi|307092004|gb|ADN28337.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N + +IA          ++EIG G G LT+ LL  GA KV  IEKD++    L+D  +
Sbjct: 2   DANQIARIAALGELSASDKILEIGPGLGPLTEFLLAYGA-KVFAIEKDRRLVDFLRDRFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              N  +++QDDAL    EK  + S   ++I+NLPY++ + +L
Sbjct: 61  TFSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPIL 101


>gi|207109769|ref|ZP_03243931.1| dimethyladenosine transferase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 157

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 60/135 (44%), Gaps = 23/135 (17%)

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +PY I TRL+ N +      P    L ++ QKEV  +  A+ +      LSVL      A
Sbjct: 1   MPYYIATRLVLNALKD----PKCRGLLVMTQKEVALKFCARDSQ---NALSVLAHAIGDA 53

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH---------LNPIPCCLESLKK-------ITQE 228
           T++FD+ P  F P PKV S+V   I           L   P   ESL+K         + 
Sbjct: 54  TLLFDVPPSAFSPPPKVFSSVFEVIKEPLKEKALASLAQAPFFEESLQKGFETLEDFLKA 113

Query: 229 AFGKRRKTLRQSLKR 243
            F   RKTL  +LK+
Sbjct: 114 CFSSPRKTLSNNLKK 128


>gi|18542252|gb|AAL75499.1| ErmA [Staphylococcus aureus]
 gi|18542254|gb|AAL75500.1| ErmA [Staphylococcus aureus]
          Length = 180

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           VIEIG+G G+ T+ L+ + +R V  IE D     + K+  +   N +++IQ D LK  F 
Sbjct: 22  VIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVTKEAVNPSEN-IKVIQTDILKFSFP 79

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
           K  N     +I  N+PYNI T    + +   T+    +   L+ +K   +R+   + +  
Sbjct: 80  KHIN----YKIYGNIPYNIST----DIVKRITFESQAKYSYLIVEKGFAKRLQNLQRA-- 129

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
              L +L        M+  + P  F P P V S +I
Sbjct: 130 ---LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 162


>gi|291386470|ref|XP_002709749.1| PREDICTED: transcription factor B2, mitochondrial-like [Oryctolagus
           cuniculus]
          Length = 392

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLD--LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +  +++ PK+Y+    L +  + IL+   +   SL      E   GPG LTQ LL  GA 
Sbjct: 56  VCKHRLDPKRYVSSRGLAETLVPILRGSQKDPRSL----FSECNPGPGVLTQALLETGA- 110

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV+ +E D+ F P L+ + +    +LE++  D  K+D  K   +  PI I   L  N+G 
Sbjct: 111 KVVALESDRNFIPRLESLGNNLDGKLEVVYCDFFKLDPRKCGLVRPPIMISHVLFQNLGI 170

Query: 132 RLL 134
           + L
Sbjct: 171 KAL 173


>gi|45826066|gb|AAS77676.1| ErmB [Shuttle vector pELS100]
 gi|45826074|gb|AAS77683.1| ErmB [Shuttle vector pELS200]
 gi|45826081|gb|AAS77689.1| ErmB [Shuttle vector pLPV111]
 gi|47420452|gb|AAT27432.1| 23S rRNA methylase [Lactobacillus reuteri]
          Length = 245

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PYN+ T+++   +    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYNLSTQIIKKVVFESR 118

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
               + ++   F K   +          +  L +L   +     +  +    F P PKV 
Sbjct: 119 ASDIYLTVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|307091946|gb|ADN28308.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N+ + I +  G   G  ++EIG G G LT  L     R + ++EKD +    L     
Sbjct: 2   DKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDVR-LTLVEKDGRMIQWLG--QQ 58

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +R+E+   DAL  D    +    P+RII NLPY + T L+  + +A
Sbjct: 59  FRSDRVELFHIDALNFDLRTLYG-RGPVRIIGNLPYYVSTPLIAKYTAA 106


>gi|5123863|emb|CAA66307.2| 23S rRNA methyltransferase [Streptomyces fradiae]
          Length = 291

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 112/270 (41%), Gaps = 33/270 (12%)

Query: 22  KKYMGQNFLLDLNILKKIA------ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           ++  GQNF       ++ A      ES+G+ D +TV E+G G G +T+ L+  G   ++ 
Sbjct: 28  RRVWGQNFFRSAGSARRFARQLTGAESAGN-DSVTV-EVGPGAGRITKELVRDG-HPIVA 84

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D  +   L ++  + PN L ++ DD     F  +     P+R I NLP+  GTR+L 
Sbjct: 85  VEVDPHWADRLAEL--ELPN-LTVVNDD-----FTTWPLPDGPLRFIGNLPFGTGTRMLR 136

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS-PHV 194
             ++    P        L QK+       +K +  YG       W    T    +  P  
Sbjct: 137 RCLALG--PDRCREGVFLLQKQY-----TRKRTGAYGGNLFNAQWEPWYTFRRGLGFPRQ 189

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES----LKKITQEAFGKRRKTLRQ---SLKRLGGE 247
            F +P   S     +    P P    S     ++  ++ F   R T+ +   +L R  G 
Sbjct: 190 EF-APVPGSDTETLLVRSRPRPLAPWSRHAAYQRFVEDVFNTSRLTIGEAARALDRRAGP 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             L  A +   LR ++++ E +  + +  T
Sbjct: 249 GWLRGARVPPGLRVKDITAEQWADLFHACT 278


>gi|156365624|ref|XP_001626744.1| predicted protein [Nematostella vectensis]
 gi|156213632|gb|EDO34644.1| predicted protein [Nematostella vectensis]
          Length = 368

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 43/211 (20%)

Query: 9   SLKTILSHYKIIPKKYMGQNF--LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S  T++  Y + P+ Y  +N+  + D ++ +++A+   ++ G  VIE   GPG LT+ ++
Sbjct: 34  SRATLIEKYNLKPRSYTVKNYKYITDRDLAERVAKVL-NVQGHCVIEASPGPGMLTRAMI 92

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             GA++VI +E D+ F   L+ + S+   +   +  D  K+D     + S     I   P
Sbjct: 93  DSGAKQVIGLEPDKIFMEDLRSLQSETNGKFTPLFGDFGKIDPHLVHDESDTKARICRAP 152

Query: 127 YNIGTRLLFNWISADTWP-------------------------------PFWES------ 149
             I ++ LF  IS   W                                P  ES      
Sbjct: 153 -AIASKDLFKGISPVEWESDETPVKFVGIEGGKTLASTTKILMSYLARVPGKESIFKIGR 211

Query: 150 --LTLLFQKEVGERITAQKNSPHYGRLSVLT 178
             L   +  +  ER+ AQ  + +Y RLS++ 
Sbjct: 212 CELLFFYTHDRAERLLAQPGTKYYNRLSIMA 242


>gi|296271439|ref|YP_003654071.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobispora bispora DSM
           43833]
 gi|296094226|gb|ADG90178.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobispora bispora DSM
           43833]
          Length = 278

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 27/229 (11%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + QNF++D   + ++ +++       V+E GAG G LT + L    R+VI  E D  
Sbjct: 28  RRALSQNFMIDPRAVARVVDAARLSPDDLVVEPGAGYGALT-LALARTCRRVIAYEIDPV 86

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +   P  + ++  D L+    +      P  ++ N+PY++ T  + +W    
Sbjct: 87  AAGRLAARTRGDPA-VHVVAGDFLRARPPR-----EPFAVVGNIPYHL-TSPIVDWCLRA 139

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV----FFP 197
              P   + TL+ Q E      A+K +  YGR S++T  RT    ++ I+  +    F P
Sbjct: 140 ---PALSAATLVTQAEY-----ARKRTGGYGRWSLVTV-RTWPGFIWRIAGRIDRSAFRP 190

Query: 198 SPKVTSTVIHFIPHLNPIP----CCLESLKKITQEAFGKRRKTLRQSLK 242
            P + S ++       P P      L   + + +  F  R  +L  SL+
Sbjct: 191 MPSIDSAILRI--ERRPAPLVPVSALREYRAMVELGFRGRGGSLYASLR 237


>gi|307091966|gb|ADN28318.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 4/114 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++    L+D  +
Sbjct: 2   DANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIEFLRDRFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
              N  +++QDDAL    EK  +     ++++NLPY++ + +L   ++  + PP
Sbjct: 61  TFSN-FDLLQDDALAYLKEKDRDWRD-WKLVSNLPYSVASPILVE-LALGSHPP 111


>gi|90901924|gb|ABE01848.1| Erm(39)po [Mycobacterium porcinum]
          Length = 246

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 27/250 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D  ++  I        G  +IEIGAG G LT  L  L  R++  IE D++    
Sbjct: 12  GQNFLCDRRVIADIVTIVSRTTG-PIIEIGAGDGALTLPLQRLN-RQLTAIEIDRRRARR 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L D +S           + +  DF K+   ++P  ++ NLP+++ T +L   +      P
Sbjct: 70  LADRTSA----------EVVSADFLKYRLPTAPHVVVGNLPFHLTTAMLRRLLHG----P 115

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRT--KATMMFDISPHVFFPSPKVT 202
            W    LL Q EV  R  A       G  +++T  W    +  +   +S   F P P V 
Sbjct: 116 GWTDAVLLMQWEVARRRAA------IGGATMMTAQWWPWFEFGLARKVSADAFRPRPGVD 169

Query: 203 STVIHFIPHLNP-IPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           + ++       P +P       + +  E F  R   + Q L+       L   GI  +  
Sbjct: 170 AGLLTITRRGEPLVPTADRRRYQALAHEVFTGRGHGMAQILRHHVDRRWLQANGIHPSAL 229

Query: 261 AENLSIEDFC 270
             +LS + + 
Sbjct: 230 PRDLSAQQWA 239


>gi|296119337|ref|ZP_06837905.1| rRNA adenine N-6-methyltransferase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967729|gb|EFG80986.1| rRNA adenine N-6-methyltransferase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 264

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 94/234 (40%), Gaps = 45/234 (19%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D  I K + +   +  G  +IEIG G G LT  L TL  R +  +E D      
Sbjct: 12  GQNFLNDKTIQKAVIDRVKATAG-PIIEIGPGAGALTNHLSTLD-RPLTAVEIDGSLVHH 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           LK     HP   EI+  D L     +     +P  I+ NLP++  T +L + + A    P
Sbjct: 70  LKQ--HLHPG-AEIVHGDFLHYRLPE-----TPFVIVGNLPFHQITAMLRHILHA----P 117

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM-------FD------ISP 192
            W    L+ Q EV  R           R S+       ATMM       FD      +  
Sbjct: 118 RWTHAVLIVQWEVASR-----------RASI-----GGATMMTAQWWPWFDFELGQRVPA 161

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRL 244
           H F P+P V   ++       P+    E  + + +  + F  R + + Q   R+
Sbjct: 162 HSFTPAPSVDGGLLTIARRTRPLLPRQERKAFQSMVHKVFTGRGRGIVQIASRM 215


>gi|325104371|ref|YP_004274025.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM
           12145]
 gi|324973219|gb|ADY52203.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM
           12145]
          Length = 270

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +P ++ GQ+F +D  ++      +    G  V++IGAG G LT  L+   +  VI IE D
Sbjct: 6   LPVRFTGQHFTIDTILINDAIRLAEIQKGDVVLDIGAGSGFLTVHLVK-HSTNVIAIEND 64

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +    L+     + N + II      +D+ KF       ++++N+P+ + + +L + + 
Sbjct: 65  NRLVSELRSKFRVNKN-VTIIG-----LDYRKFSVPQKNFKVVSNIPFALTSEILKSLMY 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +    F++   L+ Q E  +++  +K   ++   +V      +   +++I+P  F P P
Sbjct: 119 TNI--EFFKQGCLIMQFESAKKLVRKK---YFNPYTVFYHTFFEVRFIYEINPESFMPPP 173

Query: 200 KVTSTVI 206
            V S ++
Sbjct: 174 TVKSALV 180


>gi|307092000|gb|ADN28335.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 4/114 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++    L+D  +
Sbjct: 2   DANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
              N  +++QDDAL    EK  +     ++++NLPY++ + +L   ++  + PP
Sbjct: 61  TFSN-FDLLQDDALAYLKEKDRD-RRDWKLVSNLPYSVASPILVE-LALGSHPP 111


>gi|33243437|gb|AAQ01499.1| erythromycin resistance protein [Lactobacillus crispatus]
 gi|329666418|gb|AEB92366.1| N-methyltransferase [Lactobacillus johnsonii DPC 6026]
          Length = 245

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PYN+ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYNLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|325123520|gb|ADY83043.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 91

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKVTS V   +P+   PI    E +L ++    F +RRKTLR SLK +  E+   +
Sbjct: 6   FNPPPKVTSAVFRLVPYDQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMIAEDGFEK 65

Query: 253 AGIETNLRAENLSIEDFCRITN 274
           AG++   R E L++  F  + +
Sbjct: 66  AGVDPMARPETLTLAQFVALAD 87


>gi|333031235|ref|ZP_08459296.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides coprosuis DSM
           18011]
 gi|18652656|gb|AAK07612.2|AF319779_1 macrolide-lincosamide-streptogramin B resistance protein
           [Bacteroides coprosuis DSM 18011]
 gi|332741832|gb|EGJ72314.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides coprosuis DSM
           18011]
          Length = 266

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 18/192 (9%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P ++ GQ+F +D  ++K   + S      TV++IGAG G LT  LL     KVI IE
Sbjct: 4   KKLPVRFTGQHFTIDKVLIKDAIKESNINQHDTVLDIGAGKGFLTVHLLK-NVDKVIAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNIGTRLL 134
            D           SQH  R + I    ++V   D+  F     P ++++N+P+ I + + 
Sbjct: 63  NDVAL--------SQHL-RKKFIHAQNVQVVSCDYRNFVVPKVPFKVVSNIPFGITSDIF 113

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            + +  +    ++   +++ Q E  +++ + K    Y  L+VL         +++I+P  
Sbjct: 114 SSLMFENV--EYFLCGSIILQSEPAKKLFSSKV---YNPLTVLYHTYYDLKFLYEINPES 168

Query: 195 FFPSPKVTSTVI 206
           F P P V S ++
Sbjct: 169 FLPPPTVKSALL 180


>gi|73487002|gb|AAZ76618.1| Erm(38)go [Mycobacterium goodii]
          Length = 377

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 103/257 (40%), Gaps = 28/257 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +  +GQNFL D  ++  I E      G  +IEIGAG G LT  L  L  R +  IE D +
Sbjct: 8   RHELGQNFLSDRRVIADIVEIVSHTTG-PIIEIGAGDGALTVPLQGL-VRPLTAIEVDAR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +++     EI+       DF +     SP  ++ NLP+++ T +L   +   
Sbjct: 66  RAHRLAQRTAK---STEIV-----VADFLRHPLPHSPHVVVGNLPFHLTTAILRRLLHG- 116

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRT--KATMMFDISPHVFFPS 198
              P W +  L+ Q EV  R  A       G  +++T  W    +  +   I    F P 
Sbjct: 117 ---PGWTTAVLVVQWEVARRRAA------VGGATMMTAQWWPWFEFALAQKIPASSFRPR 167

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK--KITQEAFGKRRKTLRQSLKRLGG---ENLLHQA 253
           P V + ++       P+    +  +   +    F  R + + Q L+RL      N L   
Sbjct: 168 PAVDAGLLTITRRNRPLVDSADRARYQALVHRVFTGRGRGMAQILRRLPTPVPRNWLRAN 227

Query: 254 GIETNLRAENLSIEDFC 270
           G+  N     LS   + 
Sbjct: 228 GVAPNALPRQLSAAQWA 244


>gi|307091962|gb|ADN28316.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N + +IA          ++EIG G G LT+ LL  GA KV  IEKD++    L+D  +
Sbjct: 2   DANQIARIAALGELSASDKILEIGPGLGPLTEFLLAYGA-KVFAIEKDRRLVDFLRDRFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              N  +++QDDAL    EK  + S   ++I++LPY++ + +L
Sbjct: 61  TFSN-FDLLQDDALAYLKEKDRDWSD-WKLISDLPYSVASPIL 101


>gi|307091882|gb|ADN28276.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L +IA          ++EIG G G LT+ LL  GA KV  IEKD++    L+D   
Sbjct: 2   DANQLARIAALGELSASDKILEIGPGLGPLTEFLLASGA-KVFAIEKDRRLIDFLRDRFV 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              N  +++QDDAL    EK  + S   ++I+NLPY++ + +L
Sbjct: 61  SVSN-FDLLQDDALAYLNEKDSDWSD-WKLISNLPYSVASPIL 101


>gi|307092012|gb|ADN28341.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 5/114 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++IA ++G      ++EIG G G LT  L+  GA  V+ IE+D++    L+ +  
Sbjct: 2   DQNQLRRIAAAAGLKPEDNILEIGPGLGPLTAFLVESGA-NVLAIERDRRLCECLERVFP 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           Q   + +++ DDAL  D+ K     +  +++ANLPY+  + +L   ++    PP
Sbjct: 61  QS-AKFKLLHDDAL--DYVKKNRDWAGWKLVANLPYSAASPILVE-LAGAAMPP 110


>gi|262203305|ref|YP_003274513.1| rRNA (adenine-N(6)-)-methyltransferase [Gordonia bronchialis DSM
           43247]
 gi|262086652|gb|ACY22620.1| rRNA (adenine-N(6)-)-methyltransferase [Gordonia bronchialis DSM
           43247]
          Length = 253

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 34/230 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +  +GQNFL+    +++I +   + DG  ++EIG+G G LT  L  L  R +  I+ D +
Sbjct: 10  RHELGQNFLVHQPTIQRIVDLIDATDG-PILEIGSGGGALTAHLAALD-RPLTAIDIDAR 67

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                      H  R      +AL  D      I +P+ ++ N+P+++ + +L   +  D
Sbjct: 68  LI---------HSLRQRFPHINALHADVLTHV-IDAPV-VVGNIPFHLTSAILRRLLGHD 116

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH------VF 195
           T    W    LL Q EV  R          G  +++T    +A   FD + H       F
Sbjct: 117 T----WTDSVLLVQWEVARRRAG------VGGATMMT---AQAAPWFDFALHGRVPARAF 163

Query: 196 FPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243
            P+P V   ++       P+  P      ++   + F  R + +   L+R
Sbjct: 164 RPAPTVDGGILTIARRRRPLIDPRDRRRYERFVGDVFTGRGRGIAAILRR 213


>gi|20069865|ref|NP_613080.1| rRNA methylase [Lactobacillus reuteri]
 gi|27753648|ref|NP_776205.1| erm44 [Lactobacillus reuteri]
 gi|27656765|gb|AAO20906.1|AF205068_1 erm44 [Lactobacillus reuteri]
 gi|1230606|gb|AAC45607.1| rRNA methylase [Lactobacillus fermentum]
 gi|19918894|gb|AAL99232.1| rRNA methylase [Lactobacillus reuteri]
          Length = 250

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 29/254 (11%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S +I    H   +P     L K     +  R        ++L  +N  HQA    + +  
Sbjct: 170 SVLIKLTRHTTDVPDKYWKLYKYFVSKWVNR------EYRQLFTKNQFHQAM--KHAKVN 221

Query: 263 NLSIEDFCRITNIL 276
           NLS   + ++ +I 
Sbjct: 222 NLSTITYEQVLSIF 235


>gi|307091992|gb|ADN28331.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++I  ++   D   V+EI  G G LT++LL   AR V+ IEKD++    L++   
Sbjct: 2   DANQLRRIVAAAELTDDDRVLEISPGLGPLTEVLLAKVAR-VLAIEKDRRLIEFLRERFR 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
              N LE++ DDAL+       +  S   +++NLPY++ + +L     A+  P
Sbjct: 61  AGGN-LELLHDDALRY-LRAQDSDWSDWTVVSNLPYSVASPILVELAQAEKGP 111


>gi|25052799|gb|AAN65178.1| putative methyl transferase [Neisseria gonorrhoeae]
          Length = 135

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E D+ 
Sbjct: 7   RKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAE-KVNRLHVVEIDRD 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
               LK +     ++L I + D L+ DF    NI     I+ NLPYNI T LLF
Sbjct: 66  IVCRLKTLP--FADKLVIHEGDVLQFDFN---NIEGKKEIVGNLPYNISTPLLF 114


>gi|296230789|ref|XP_002760889.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like
           [Callithrix jacchus]
          Length = 398

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 113/284 (39%), Gaps = 53/284 (18%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD--- 108
           +E   GPG LTQ LL +GA KV+ +E D+ F P L+ +      +L +I  D  ++D   
Sbjct: 101 LECNPGPGILTQALLEVGA-KVVALESDKTFLPHLESLGKNLDGKLRVIYCDFFRMDPKG 159

Query: 109 --------------FEKF------FNISSPIRIIANLP----YNIGTRLLFNWISADTWP 144
                         F+        +    P+++I  LP      I  +L+ N  S  +  
Sbjct: 160 TGAIKPPAMASQDLFQTLGLEVVPWKAGIPLKVIGALPIRSERKILWKLIHNLYSCTSIY 219

Query: 145 PFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            +   E   L+++KE  + +    N   Y  LSVL        ++  +S  + F      
Sbjct: 220 KYGRIELNVLIYEKEFQKLMADPGNPDLYQVLSVLWQVACDIKVLHKVSKILLFKKEFCL 279

Query: 203 STVIH------------FI---PHLNPI-----PCCLESLKKITQEAFGKRRKTL---RQ 239
            T  H            FI   P+ N       P   +    + +  FGKR+  L    +
Sbjct: 280 ETESHSELLEPSQEKLYFIQITPYRNLFTDNLTPMSYQVFIHMVKHCFGKRKCRLIDHLR 339

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           SL  L  +++L Q G +   +  NL  +DF ++   +  ++D A
Sbjct: 340 SLTPLDAKDILRQIGKKKEDKVTNLYPQDFKQLFETIQSSKDYA 383


>gi|15920668|ref|NP_376337.1| dimethyladenosine transferase [Sulfolobus tokodaii str. 7]
 gi|15621451|dbj|BAB65446.1| 220aa long hypothetical rRNA adenine N-6-methyltransferase
           [Sulfolobus tokodaii str. 7]
          Length = 220

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 32/184 (17%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+FL++   +K+   S   L    +IEIG G GN+T+ +     +  +VIE D++F  
Sbjct: 3   LGQHFLVNEETIKRFV-SYVDLSFRPIIEIGGGKGNITKYI-----KPDVVIEIDKRFSS 56

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            L+++       L +I+                  +I+++LPY I        I  D   
Sbjct: 57  YLRNLVIADARFLPVIRG-----------------QIVSSLPYYITYEFFEEIIRIDQI- 98

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
              + L L+ Q +  ++I    N P Y  +S +  +  K  +  +I P  F P P+V ST
Sbjct: 99  ---KKLILILQYDFVKKIL---NEPTY--ISFILNYYYKIDVKENIPPWFFKPKPRVYST 150

Query: 205 VIHF 208
           ++ F
Sbjct: 151 IVLF 154


>gi|261405179|ref|YP_003241420.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261281642|gb|ACX63613.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. Y412MC10]
          Length = 290

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 93/224 (41%), Gaps = 34/224 (15%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P  +  Q+ L+   ++  + + +      TV++IGAG G LT + L   A  V+ IE D 
Sbjct: 15  PSNFSAQHLLISKRLIHDMIDLARIRSTDTVLDIGAGTGALT-LPLAEKAGHVLAIETDP 73

Query: 81  QFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            F   L    KD S+     + + Q D L++   +     +P  ++AN+PY+I T ++  
Sbjct: 74  AFVDKLLGKMKDSSN-----IRVKQSDFLEIPLPR-----NPFAVVANIPYSITTPIMGK 123

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMMFDI----- 190
            +     P   +   LL +    +R TA     P       +  WR    M +DI     
Sbjct: 124 LLECPGLP--LQRAVLLVEMGAAKRFTAVPIQDPR------ILSWR----MQYDIRLVRT 171

Query: 191 -SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233
            SP  F P P+V S ++       P+       K     A+G R
Sbjct: 172 VSPRHFAPPPQVDSAILTIHRRKKPLIAASHQPKFTALAAYGLR 215


>gi|1185588|gb|AAB40318.1| erythromycin resistance; erythromycin resistance determinant
           [Cloning vector pDG1663]
 gi|1185596|gb|AAB40325.1| erythromycin resistance; erythromycin resistance determinant
           [Cloning vector pDG1664]
 gi|1277133|gb|AAC53690.1| erythromycin-resistance protein [Cloning vector pFW15]
 gi|23986284|gb|AAN05740.1| rRNA methylase [Expression vector pLIV1]
          Length = 245

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL +  +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|581701|emb|CAA44667.1| methyltransferase [Streptomyces lincolnensis]
          Length = 278

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 35/237 (14%)

Query: 20  IPKKY-----MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           +P +Y     +GQNFL+D +I+K I  +       ++I      G++T  L  LG R V 
Sbjct: 1   MPSRYGSRQDLGQNFLVDPDIIKLIRRAPNERKVPSLIWRRR--GHVTLPLSRLG-RPVT 57

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +E D +    +K +S++ P  ++++ +D L     +F   + P  ++ N+P+++ T  +
Sbjct: 58  AVELDPRR---VKRLSARAPENVKVVGEDIL-----RFRLPTVPHTVVGNIPFHVTTATM 109

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS--- 191
              + A    P W S  L+ Q EV  R          G  S++T    ++   FD S   
Sbjct: 110 RRILVA----PAWVSAVLVVQWEVARRRAG------IGGCSLVT---AESWPWFDFSVLK 156

Query: 192 --PH-VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
             P   F P+P V   ++       P+       +   ++ F  R   LR+ L+R+G
Sbjct: 157 RVPRFAFRPAPSVDGGILVIERRPEPLVRERREYQAFVRQVFTGRGHGLREILQRIG 213


>gi|307091906|gb|ADN28288.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 14/126 (11%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK---VIVIEKDQQFFPILK 87
           +D + L+ IA +  +  G T++EIG G G LT +L    AR+   +I IE D+     L+
Sbjct: 1   VDQSALESIANAVVAWPGDTIVEIGPGRGALTDIL----ARRDNTLIAIEIDKALSEKLR 56

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           +  + + +R+ I+++D L+ +  +   ++ P  ++ N+PY I T +LF  +     PPF 
Sbjct: 57  ERYASN-SRVTIVENDVLETNVAEL--VAGPFVVVGNVPYYITTPILFRVLR----PPFP 109

Query: 148 ESLTLL 153
            S   L
Sbjct: 110 RSAVFL 115


>gi|228860921|ref|YP_002842047.1| ErmB [Lactobacillus plantarum]
 gi|253755557|ref|YP_003028697.1| rRNA adenine N-6-methyltransferase [Streptococcus suis BM407]
 gi|314943583|ref|ZP_07850342.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133C]
 gi|59938856|gb|AAX12187.1| erythromycin ribosome methylase [Enterococcus faecium]
 gi|219523816|gb|ACL14885.1| ErmB [Lactobacillus plantarum]
 gi|251818021|emb|CAZ55805.1| rRNA adenine N-6-methyltransferase [Streptococcus suis BM407]
 gi|290770977|emb|CBK33767.1| MLS methylase [Streptococcus suis]
 gi|290770984|emb|CBK33773.1| MLS methylase [Streptococcus pyogenes]
 gi|309385833|gb|ADO66761.1| ErmB [Enterococcus faecium]
 gi|313575405|emb|CBR26934.1| MLS methylase [Streptococcus phage phi-SsUD.1]
 gi|313597730|gb|EFR76575.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133C]
 gi|319757842|gb|ADV69784.1| ErmB [Streptococcus suis JS14]
 gi|321156819|emb|CBW38806.1| ermB [Streptococcus pneumoniae]
 gi|321157419|emb|CBW39398.1| rRNA methylase [Streptococcus pneumoniae]
          Length = 245

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|256412|gb|AAB23456.1| lincomycin-resistance determinant LmrB=23S rRNA
           adenine(2058)-N-methyltransferase homolog [Streptomyces
           lincolnensis, 78-11, Peptide, 278 aa]
          Length = 278

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 35/237 (14%)

Query: 20  IPKKY-----MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           +P +Y     +GQNFL+D +I+K I  +       ++I      G++T  L  LG R V 
Sbjct: 1   MPSRYGSRQDLGQNFLVDPDIIKLIRRAPNERKVPSLIWRRR--GHVTLPLSRLG-RPVT 57

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +E D +    +K +S++ P  ++++ +D L     +F   + P  ++ N+P+++ T  +
Sbjct: 58  AVELDPRR---VKRLSARAPENVKVVGEDIL-----RFRLPTVPHTVVGNIPFHVTTATM 109

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS--- 191
              + A    P W S  L+ Q EV  R          G  S++T    ++   FD S   
Sbjct: 110 RRILVA----PAWVSAVLVVQWEVARRRAG------IGGCSLVT---AESWPWFDFSVLK 156

Query: 192 --PH-VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
             P   F P+P V   ++       P+       +   ++ F  R   LR+ L+R+G
Sbjct: 157 RVPRFAFRPAPSVDGGILVIERRPEPLVRERREYQDFVRQVFTGRGHGLREILQRIG 213


>gi|63022016|ref|YP_232761.1| N-methyltransferase [Streptococcus pyogenes]
 gi|496516|emb|CAA47093.1| erm2 [Streptococcus pyogenes]
 gi|3127117|gb|AAC16049.1| erythromycin resistance determinant [Tn917 delivery vector pAJ005]
 gi|13549399|gb|AAK27828.1| rRNA methylase [TnphoZ mutagenesis vector pMHL120]
 gi|38707215|gb|AAR27225.1| N-methyltransferase [Streptococcus pyogenes]
          Length = 253

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL +  +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 16  SQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 72

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 73  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 122

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 123 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 177

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 178 SVLIKLTRHTTDVP 191


>gi|307092036|gb|ADN28353.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 119

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKD 88
           +D   +++IA S G L G TV+EIG G G +T    TL AR   V+ IE D      L+ 
Sbjct: 1   IDAQAIERIAASLGDLHGHTVVEIGPGAGAITG---TLAARADHVLAIELDNGLAAHLR- 56

Query: 89  ISSQHP-NRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWISA 140
             +Q P +++ ++Q D L  DF      +   + +  NLPY I +++L    ++
Sbjct: 57  --TQFPADKVTVLQQDVLNFDFAAASAAAGERLAVAGNLPYGITSQILLKLAAS 108


>gi|256395256|ref|YP_003116820.1| rRNA (adenine-N(6)-)-methyltransferase [Catenulispora acidiphila
           DSM 44928]
 gi|256361482|gb|ACU74979.1| rRNA (adenine-N(6)-)-methyltransferase [Catenulispora acidiphila
           DSM 44928]
          Length = 263

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 111/269 (41%), Gaps = 34/269 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ +GQNFL D  ++ +I           +IE+GAG G LT  L  L  R V  +E D +
Sbjct: 17  RQELGQNFLADPALIAEIQRLVREQTQGPIIELGAGDGALTGPLSRLN-RPVTALEIDPR 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               ++ +  +   R ++++ D L+  F    +      I+ N+P+++ T ++   +S  
Sbjct: 76  R---VRRLQERFGGRADVVRADVLRYRFPAAEHT-----IVGNIPFHLTTAIIRKLLSER 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG----WRTKATMMFDISPHVFFP 197
                W S  L+ Q EV  R          G  S+LT     W     ++  I    F P
Sbjct: 128 G----WSSAVLIVQWEVARRRAG------VGGASMLTASWWPW-YDFGLVRRIPASAFRP 176

Query: 198 SPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG------ENL 249
            P V + ++       P+P   E    +   ++ F    + + + + R G          
Sbjct: 177 VPSVDAGLLTM--WRRPVPLVEERSGYQTFVKQVFQAPGRGVEEMIARTGRVRRAELREW 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTD 278
           +  + I      ++L+ ED+ R+  ++ D
Sbjct: 235 VRWSRIPVRALPKDLAAEDWARLWELVRD 263


>gi|59938858|gb|AAX12188.1| erythromycin ribosome methylase [Enterococcus faecium]
          Length = 243

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 6   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 62

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 63  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 112

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 113 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 167

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 168 SVLIKLTRHTTDVP 181


>gi|26347035|dbj|BAC37166.1| unnamed protein product [Mus musculus]
          Length = 160

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           +FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV S+V+   P  
Sbjct: 1   MFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKN 60

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIE 267
            P P   +    + +  F ++ KTL  + K    + LL +       ++  +  E+ SI 
Sbjct: 61  PPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVIPEDFSIA 120

Query: 268 DFCRITNILT 277
           D  +I  ILT
Sbjct: 121 D--KIQQILT 128


>gi|307091990|gb|ADN28330.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N+ + I +  G   G  ++EIG G G LT  L     R + ++EKD +    L     
Sbjct: 2   DKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDVR-LTLVEKDGRMIQWLG--QQ 58

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +R+E+   DAL  D    +    P+RII NLP+ + T L+  + +A
Sbjct: 59  FRSDRVELFHIDALDFDLRTLYG-RGPVRIIGNLPHYVSTPLIAKYTAA 106


>gi|302527546|ref|ZP_07279888.1| dimethyladenosine transferase [Streptomyces sp. AA4]
 gi|302436441|gb|EFL08257.1| dimethyladenosine transferase [Streptomyces sp. AA4]
          Length = 260

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 20/157 (12%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             ++T++S      +  +GQNFL D  ++  +  ++    G  ++E+ AG G LT  L  
Sbjct: 2   RGVRTLMSAQSFGGRHELGQNFLADPAVIAAVCTAAARTTG-PLVELAAGDGALTVPLSR 60

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            G R +  +E D +    L   +  H   +++++ D L+    +  ++  P  ++ NLP+
Sbjct: 61  TG-RPLTAVELDPRRARRLAQRTGGH---VQVVRGDLLR---HRLPDV--PHTVVGNLPF 111

Query: 128 NIGT---RLLFNWISADTWPPFWESLTLLFQKEVGER 161
           ++ T   R LF         P WE   LL Q EV  R
Sbjct: 112 HLTTATLRRLFR-------QPHWELAVLLVQWEVARR 141


>gi|149748941|ref|XP_001490604.1| PREDICTED: similar to transcription factor B2, mitochondrial [Equus
           caballus]
          Length = 398

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 7/123 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLD--LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           ++  ++ P++Y+    L +  + +L+   E +  L     +E   GPG LTQ LL  GAR
Sbjct: 64  VTKCRLEPRRYITSPRLAETLVQVLRGGREKTCQL----FLECNPGPGILTQALLENGAR 119

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            VI +E D+ F P L+ +      +LE++  D  K+D      +  PI +   L  N+G 
Sbjct: 120 -VIALESDRTFIPHLESLGKNLNGKLEVVHCDFFKLDPTNCGTVKPPIMVSKMLFQNLGI 178

Query: 132 RLL 134
           + L
Sbjct: 179 QAL 181


>gi|325955700|ref|YP_004286328.1| erythromycin resistance protein [Lactobacillus acidophilus 30SC]
 gi|325334486|gb|ADZ08234.1| erythromycin resistance protein [Lactobacillus acidophilus 30SC]
          Length = 245

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PYN+ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYNLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|186909909|gb|ACC94310.1| ErmB [uncultured Enterococcus sp.]
          Length = 248

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 10  SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 66

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 67  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 116

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 117 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 171

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 172 SVLIKLTRHTTDVP 185


>gi|29377810|ref|NP_816938.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis V583]
 gi|187729653|ref|YP_001798654.1| rRNA adenine N-6-methyltransferase [Lactococcus garvieae]
 gi|227518295|ref|ZP_03948344.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecalis
           TX0104]
 gi|228477694|ref|ZP_04062323.1| rRNA adenine N-6-methyltransferase [Streptococcus salivarius SK126]
 gi|255976304|ref|ZP_05426890.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis T2]
 gi|256852580|ref|ZP_05557955.1| rRNA methylase [Enterococcus faecalis T8]
 gi|256959519|ref|ZP_05563690.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|257080187|ref|ZP_05574548.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|292493937|ref|YP_003533080.1| rRNA methyltransferase [Bacillus sp. BS-01]
 gi|293384636|ref|ZP_06630499.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis R712]
 gi|293389670|ref|ZP_06634121.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis S613]
 gi|307273762|ref|ZP_07554987.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0855]
 gi|307283567|ref|ZP_07563750.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0860]
 gi|307288935|ref|ZP_07568906.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0109]
 gi|309803307|ref|ZP_07697404.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV
           11V1-d]
 gi|309808536|ref|ZP_07702434.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV
           01V1-a]
 gi|312907858|ref|ZP_07766843.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis DAPTO 512]
 gi|312978967|ref|ZP_07790690.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis DAPTO 516]
 gi|317495460|ref|ZP_07953828.1| ribosomal RNA adenine dimethylase [Gemella moribillum M424]
 gi|322392769|ref|ZP_08066227.1| rRNA adenine N-6-methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|331267237|ref|YP_004326867.1| erythromycin resistance protein; ribosomal RNA adenine
           N-6-methyltransferaseadenine dimethylase family protein
           [Streptococcus oralis Uo5]
 gi|30179806|sp|P20173|ERMB_ENTFA RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|19568826|gb|AAL91926.1|AF480455_1 ErmB [Bacillus cereus]
 gi|19568828|gb|AAL91927.1|AF480456_1 ErmB [Bacillus cereus]
 gi|19568830|gb|AAL91928.1|AF480457_1 ErmB [Bacillus cereus]
 gi|19568832|gb|AAL91929.1|AF480458_1 ErmB [Bacillus cereus]
 gi|19568836|gb|AAL91931.1|AF480460_1 ErmB [Bacillus cereus]
 gi|456370|emb|CAA45935.1| erm2 [Streptococcus pyogenes]
 gi|1532095|gb|AAC44378.1| adenine methylase [Staphylococcus lentus]
 gi|1835782|gb|AAC71783.1| adenine methylase [Enterococcus faecalis]
 gi|6273679|emb|CAA73921.1| rRNA methylase [Staphylococcus aureus]
 gi|21492653|gb|AAA27452.2| Erm(B) [Enterococcus faecalis]
 gi|29345262|gb|AAO83009.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis V583]
 gi|31442295|dbj|BAC77345.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|51493758|gb|AAU04869.1| rRNA methylase [Bursa aurealis delivery vector pBursa]
 gi|67511466|emb|CAI99370.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae]
 gi|67511470|emb|CAI99372.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae]
 gi|67511474|emb|CAI99374.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes]
 gi|87042724|gb|ABD16369.1| rRNA methylase [Streptococcus agalactiae]
 gi|110556100|dbj|BAE98119.1| rRNA methylase [Enterococcus faecalis]
 gi|134269486|emb|CAL69907.1| rRNA methylase [Streptococcus pyogenes]
 gi|145974706|gb|ABQ00061.1| ErmB [Staphylococcus aureus]
 gi|158148992|dbj|BAF82031.1| rRNA methylase [Staphylococcus aureus]
 gi|171854437|dbj|BAG16444.1| putative rRNA adenine N-6-methyltransferase [Lactococcus garvieae]
 gi|227074249|gb|EEI12212.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecalis
           TX0104]
 gi|228250583|gb|EEK09794.1| rRNA adenine N-6-methyltransferase [Streptococcus salivarius SK126]
 gi|255969176|gb|EET99798.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis T2]
 gi|256712127|gb|EEU27160.1| rRNA methylase [Enterococcus faecalis T8]
 gi|256950015|gb|EEU66647.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|256988217|gb|EEU75519.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|281334214|gb|ADA61298.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) [Staphylococcus aureus]
 gi|291078052|gb|EFE15416.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis R712]
 gi|291081011|gb|EFE17974.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis S613]
 gi|291276226|gb|ADD91314.1| rRNA methyltransferase [Bacillus sp. BS-01]
 gi|306500112|gb|EFM69458.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0109]
 gi|306503591|gb|EFM72832.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0860]
 gi|306509563|gb|EFM78608.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0855]
 gi|308164815|gb|EFO67065.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV
           11V1-d]
 gi|308168213|gb|EFO70333.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV
           01V1-a]
 gi|310626139|gb|EFQ09422.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis DAPTO 512]
 gi|311288232|gb|EFQ66788.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis DAPTO 516]
 gi|315154402|gb|EFT98418.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0031]
 gi|315160679|gb|EFU04696.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0645]
 gi|315163599|gb|EFU07616.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX1302]
 gi|316914274|gb|EFV35752.1| ribosomal RNA adenine dimethylase [Gemella moribillum M424]
 gi|316980281|emb|CBL58180.1| rRNA methylase [Staphylococcus aureus]
 gi|321144347|gb|EFX39750.1| rRNA adenine N-6-methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321157439|emb|CBW39418.1| rRNA methylase [Streptococcus pneumoniae]
 gi|326683909|emb|CBZ01527.1| erythromycin resistance protein; ribosomal RNA adenine
           N-6-methyltransferaseadenine dimethylase family protein
           [Streptococcus oralis Uo5]
 gi|739954|prf||2004266G erm2 protein
          Length = 245

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|2623780|gb|AAB86539.1| erythromycin resistance determinant [Lactobacillus reuteri]
          Length = 248

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTKI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|182683142|ref|YP_001834889.1| rRNA methylase [Streptococcus pneumoniae CGSP14]
 gi|182628476|gb|ACB89424.1| rRNA methylase [Streptococcus pneumoniae CGSP14]
          Length = 245

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|314993276|ref|ZP_07858648.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133B]
 gi|313592239|gb|EFR71084.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133B]
          Length = 249

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 12  SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 68

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 69  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 118

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 119 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 173

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 174 SVLIKLTRHTTDVP 187


>gi|309777023|ref|ZP_07671992.1| putative rRNA (adenine-N(6)-)-methyltransferase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915233|gb|EFP61004.1| putative rRNA (adenine-N(6)-)-methyltransferase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 274

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 12/183 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL++  +++++   S       VIEIG G G +T  +L+  A +V+ +E DQ+ +  
Sbjct: 7   SQNFLVNKKLVERLISKSNIDVTDYVIEIGPGKGIITD-VLSQHAGEVVAVEYDQELYNN 65

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           L    S H N   I  D      F K+   ++   +I +N+P+ I T  +   ++ D  P
Sbjct: 66  LVRYHS-HDNVTYIFGD------FLKYKLPLNRRYKIFSNIPFQI-TADIIRKLTDDVNP 117

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
           P    + ++ Q+E  ++        + G  + +   + K  +        FFPSP V + 
Sbjct: 118 P--SDINIIIQREAAKKNCGIPLQKYEGFRAAIIKAQYKVEITHSFKRSDFFPSPNVDTV 175

Query: 205 VIH 207
           ++H
Sbjct: 176 MLH 178


>gi|182684293|ref|YP_001836040.1| erythromycin ribosome methylase [Streptococcus pneumoniae CGSP14]
 gi|182629627|gb|ACB90575.1| erythromycin ribosome methylase [Streptococcus pneumoniae CGSP14]
          Length = 261

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|167470195|ref|ZP_02334899.1| dimethyladenosine transferase [Yersinia pestis FV-1]
          Length = 81

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%)

Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L +IT +AF +RRKT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 19  LSRITTQAFNQRRKTVRNSLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 74


>gi|84000229|ref|NP_001033216.1| dimethyladenosine transferase 2, mitochondrial [Bos taurus]
 gi|122138757|sp|Q32LD4|TFB2M_BOVIN RecName: Full=Dimethyladenosine transferase 2, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 2;
           AltName: Full=Mitochondrial transcription factor B2;
           Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 2; Flags:
           Precursor
 gi|81673681|gb|AAI09635.1| Transcription factor B2, mitochondrial [Bos taurus]
 gi|296479265|gb|DAA21380.1| dimethyladenosine transferase 2, mitochondrial [Bos taurus]
          Length = 394

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  ++E   GPG LT+ LL  GAR VI +E D+ F P LK + +    RLE+I  D  K+
Sbjct: 95  GQLILECNPGPGVLTRALLESGAR-VIALESDKNFIPELKSLGNSVNGRLEVIYCDFFKL 153

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           D      ++ P+         + + +LF ++     P
Sbjct: 154 DPRNHGMVTPPV---------MTSDMLFQYLGVKAHP 181


>gi|59938862|gb|AAX12190.1| erythromycin ribosome methylase [Enterococcus faecium]
          Length = 243

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 35/201 (17%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 6   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 62

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T    +++F   
Sbjct: 63  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQIIKKVVFESR 116

Query: 139 SADTWPPFWESL---TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           ++D +    E     TL   + +G                +L   +     +  +    F
Sbjct: 117 ASDIYLIVEEGFYKRTLDIHRTLG----------------LLLHTQVSIQQLLKLPAECF 160

Query: 196 FPSPKVTSTVIHFIPHLNPIP 216
            P PKV S +I    H   +P
Sbjct: 161 HPKPKVNSVLIKLTRHTTDVP 181


>gi|307091870|gb|ADN28270.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D  +L+ I+ S       TVIEIG G G LT+ LL+ GA  VI IEKD  +   L    
Sbjct: 1   IDEGVLEFISNSLDFKKDETVIEIGPGLGFLTRFLLSHGAS-VIAIEKDPAYVEFLTHYY 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
                +  I+  D LK    +  +   P+++  N+PYNI + +L  W+
Sbjct: 60  KN--KKFRIVASDVLKTKISELTS-GDPVKVCGNIPYNITSPIL-EWL 103


>gi|145596181|ref|YP_001160478.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora tropica
           CNB-440]
 gi|145305518|gb|ABP56100.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora tropica
           CNB-440]
          Length = 265

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 29/231 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + QNFL+D   + ++  ++       ++E+GAG G LT+ LL   +R +I  E D  
Sbjct: 15  RRVLSQNFLVDPAAVNRLTRAAQPDPDRLLLEVGAGRGQLTR-LLAARSRHLIAYEVDPV 73

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L    +  P           + DF       +P  ++ N+P+++ T  +  W  A 
Sbjct: 74  NAAELARSCAGLPT------VTCRQADFLTASPPRAPFDVVGNIPWSL-TSAVVRWCLAA 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT-------GWRTKATMMFDISPHV 194
              P   + TLL Q E      A+K S  YGR + LT        WR    +   +    
Sbjct: 127 ---PGLRAATLLTQLEY-----ARKRSGDYGRWTRLTVRSWPEFSWR----LAGRVPRTA 174

Query: 195 FFPSPKVTSTVIHFIPHLNP-IP-CCLESLKKITQEAFGKRRKTLRQSLKR 243
           F P+P+V + ++       P +P   L + +++ +  F     +L  SL R
Sbjct: 175 FRPTPRVDAGILRIERRREPLLPVAALPAYRRMVELGFDGVGGSLAASLGR 225


>gi|47217190|emb|CAG11026.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 478

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 8/118 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           ++F++D ++ K + +     +  T+I +   GPG LT+ LL  G +KV+ +E ++ F P 
Sbjct: 154 RHFIVDPDLAKLVTQHLQPDNATTIIFDCNPGPGVLTRTLLNSGIQKVVALEGEKFFLPE 213

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+D+  Q   +LE++  D  K+D     N+  P      L  ++G       IS  +W
Sbjct: 214 LQDLEIQLDGQLEVVHCDFFKLDPIGSGNLKPPAMFTDKLFTDLG-------ISEASW 264


>gi|223932186|ref|ZP_03624190.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus suis 89/1591]
 gi|294623170|ref|ZP_06702052.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium U0317]
 gi|59938860|gb|AAX12189.1| erythromycin ribosome methylase [Enterococcus faecium]
 gi|223899167|gb|EEF65524.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus suis 89/1591]
 gi|291597422|gb|EFF28591.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium U0317]
 gi|295980968|emb|CBJ57216.1| erythromycin ribosome methylase [Streptococcus pneumoniae]
          Length = 245

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|307092022|gb|ADN28346.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307092026|gb|ADN28348.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307092028|gb|ADN28349.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307092044|gb|ADN28357.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 16/109 (14%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++I +++G      V+EIG G G LT++LL  G R+V+ IEKD +    L++   
Sbjct: 2   DQNQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLVEFLRE--R 58

Query: 92  QHPNRLEIIQDDAL------KVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              ++LE++  DAL      K D+  +       ++++NLPY++ + +L
Sbjct: 59  FQNSKLELLHADALEFLKSEKRDWNDW-------KVVSNLPYSVASPIL 100


>gi|305678698|ref|YP_003864117.1| erythromycin ribosome methylase [Enterococcus faecalis]
 gi|304324949|gb|ADM24829.1| erythromycin ribosome methylase [Enterococcus faecalis]
 gi|304324991|gb|ADM24870.1| erythromycin ribosome methylase [Enterococcus faecalis]
 gi|304325033|gb|ADM24911.1| erythromycin ribosome methylase [Enterococcus faecalis]
          Length = 245

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIKQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SALIKLTRHTTDVP 183


>gi|127203|sp|P06573|ERM_STRSA RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|150491|gb|AAA25527.1| adenine methylase [Plasmid pAM77]
          Length = 245

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL +  +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      S     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRS-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|10956213|ref|NP_053005.1| MSL methylase [Streptococcus agalactiae]
 gi|115534816|ref|YP_783898.1| MLS methylase [Enterococcus faecalis]
 gi|169833871|ref|YP_001694729.1| rRNA adenine N-6-methyltransferase
           (macrolide-lincosamide-streptogramin B resistance
           protein) [Streptococcus pneumoniae Hungary19A-6]
 gi|194398695|ref|YP_002037949.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae
           G54]
 gi|293569556|ref|ZP_06680835.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1071]
 gi|298229341|ref|ZP_06963022.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255910|ref|ZP_06979496.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503699|ref|YP_003725639.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|307127298|ref|YP_003879329.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|312904689|ref|ZP_07763842.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0635]
 gi|313247840|ref|YP_004033002.1| erythromycin resistance protein [Enterococcus faecalis]
 gi|322388219|ref|ZP_08061823.1| rRNA adenine N-6-methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|157834333|pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
           That Confers Macrolide-Lincosamide-Streptogramin
           Antibiotic Resistance, Nmr, Minimized Average Structure
 gi|511078|emb|CAA50902.1| MSL methylase [Streptococcus agalactiae]
 gi|886483|emb|CAA58028.1| adenine methylase [Enterococcus sp.]
 gi|12956999|emb|CAC29169.1| MLS methylase [Enterococcus faecalis]
 gi|33357431|gb|AAQ16568.1| macrolide resistance determining protein [Streptococcus
           hyointestinalis]
 gi|67043689|gb|AAY63932.1| MLS methylase [Streptococcus cristatus]
 gi|84616745|emb|CAJ53870.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae]
 gi|102231548|gb|ABF70488.1| erythromycin and macrolide resistance protein [Lactobacillus
           johnsonii]
 gi|156788912|gb|ABU96031.1| Erm(B) methylase [Streptococcus pneumoniae]
 gi|168996373|gb|ACA36985.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) [Streptococcus pneumoniae Hungary19A-6]
 gi|169636215|dbj|BAG12485.1| MLS methylase [Streptococcus pneumoniae]
 gi|169636245|dbj|BAG12514.1| MLS methylase [Streptococcus pneumoniae]
 gi|169636260|dbj|BAG12527.1| MLS methylase [Streptococcus pneumoniae]
 gi|194358362|gb|ACF56810.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae
           G54]
 gi|291587734|gb|EFF19603.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1071]
 gi|298239294|gb|ADI70425.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|306484360|gb|ADM91229.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|310631974|gb|EFQ15257.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0635]
 gi|312837007|dbj|BAJ34893.1| erythromycin resistance protein [Enterococcus faecalis]
 gi|321140891|gb|EFX36392.1| rRNA adenine N-6-methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321156829|emb|CBW38816.1| erm(b) methylase; subname: full=mls methylase; subname: full=rrna
           adenine n-6-methyltransferase; ec=2.1.1.48; subname:
           full=erm(b) methylase; subname: full=mls methylase;
           subname: full=rRNA adenine N-6-methyltransferase;
           ec=2.1.1.48 [Streptococcus pneumoniae]
 gi|321156886|emb|CBW38874.1| rRNA methylase [Streptococcus pneumoniae]
 gi|321157364|emb|CBW39344.1| rRNA methylase [Streptococcus pneumoniae]
 gi|321157384|emb|CBW39363.1| rRNA methylase [Streptococcus pneumoniae]
 gi|321157409|emb|CBW39387.1| rRNA methylase [Streptococcus pneumoniae]
 gi|321157455|emb|CBW39433.1| rRNA methylase [Streptococcus pneumoniae]
          Length = 245

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|270593172|ref|ZP_06221463.1| dimethyladenosine transferase [Haemophilus influenzae HK1212]
 gi|270318418|gb|EFA29543.1| dimethyladenosine transferase [Haemophilus influenzae HK1212]
          Length = 66

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           L ++  +AF +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+ N
Sbjct: 11  LNRVCSQAFNQRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARLAN 63


>gi|291300090|ref|YP_003511368.1| rRNA (adenine-N(6)-)-methyltransferase [Stackebrandtia nassauensis
           DSM 44728]
 gi|290569310|gb|ADD42275.1| rRNA (adenine-N(6)-)-methyltransferase [Stackebrandtia nassauensis
           DSM 44728]
          Length = 278

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 25/193 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + QNFL +  +   +   SG      V+EIG G G LTQ +     R V+  E D  
Sbjct: 13  RRRLSQNFLTEPRVAAAVVRLSGVTRADLVVEIGPGRGILTQAIARKAGR-VLAYELD-- 69

Query: 82  FFPIL-KDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
             P+L K +++++ +  R+  +  D L     +      P  I+AN+PY   + ++   +
Sbjct: 70  --PVLAKRLAARYGDDPRVHCVHRDFLSTSPPR-----EPFSIVANIPYARTSAIVEWCL 122

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT--GW-RTKATMMFDISPHVF 195
            A       ++ TL+ Q E      A+K S  YGR S +T   W R +  ++  +  + F
Sbjct: 123 KARE----LDAATLITQLEY-----ARKRSGDYGRWSQVTVESWPRFEWRLLGRVDRYKF 173

Query: 196 FPSPKVTSTVIHF 208
            P P+V S ++  
Sbjct: 174 DPVPRVDSGILRL 186


>gi|310286444|ref|YP_003937705.1| rRNA adenine N-6-methyltransferase [Escherichia coli]
 gi|308826773|emb|CBX36034.1| rRNA adenine N-6-methyltransferase [Escherichia coli]
          Length = 245

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P P+V 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPRVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|59938866|gb|AAX12192.1| erythromycin ribosome methylase [Enterococcus faecium]
          Length = 243

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 6   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 62

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 63  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 112

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 113 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIKQLLKLPAECFHPKPKVN 167

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 168 SALIKLTRHTTDVP 181


>gi|190410490|ref|YP_001965493.1| putative erythromycin methylase B protein [Pediococcus
           acidilactici]
 gi|81176611|gb|ABB59539.1| putative erythromycin methylase B protein [Pediococcus
           acidilactici]
          Length = 245

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIKQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SALIKLTRHTTDVP 183


>gi|113196886|gb|ABI31743.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196894|gb|ABI31747.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196896|gb|ABI31748.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196898|gb|ABI31749.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
          Length = 219

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|22164060|dbj|BAC07277.1| 23S rRNA methylase [Escherichia coli]
          Length = 245

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDNHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P P+V 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPRVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|33468439|emb|CAD89787.1| ErmG [Bacteroides ovatus]
          Length = 244

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 15/181 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK  F       +P +I  ++PYNI T ++   +   + P 
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIVFESSAPI 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K + +   +         L++L       +++  I  + F P PKV S +
Sbjct: 123 SYLIVEYGFAKMLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173

Query: 206 I 206
           I
Sbjct: 174 I 174


>gi|225573472|ref|ZP_03782227.1| hypothetical protein RUMHYD_01664 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039163|gb|EEG49409.1| hypothetical protein RUMHYD_01664 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|294617740|ref|ZP_06697358.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679]
 gi|291595986|gb|EFF27261.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679]
          Length = 245

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|15127842|gb|AAK84314.1|AF368302_1 ErmB [Enterococcus faecium]
          Length = 237

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|317505058|ref|ZP_07963005.1| dimethyladenosine transferase [Prevotella salivae DSM 15606]
 gi|315663836|gb|EFV03556.1| dimethyladenosine transferase [Prevotella salivae DSM 15606]
          Length = 70

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 34/46 (73%)

Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
          KK++GQ+FL DLNI K+IA++  +   I ++EIG G G LTQ L+T
Sbjct: 7  KKHLGQHFLTDLNIAKRIADTVDACPAIPILEIGPGMGVLTQYLVT 52


>gi|307092064|gb|ADN28367.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++I  ++       V+EIG G G LT++LL   A +V+ IE D +    L++   
Sbjct: 2   DQNQLRRIVAAAELTPADKVLEIGPGLGPLTELLLE-NAGEVLAIEMDGRLVEYLRE--- 57

Query: 92  QHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           + PN RLE++  DALK+         S  +++ANLPY++ + +L  
Sbjct: 58  RFPNPRLELLHADALKI-LRHVPRDWSDWKLVANLPYSVASPILVE 102


>gi|322801725|gb|EFZ22327.1| hypothetical protein SINV_09620 [Solenopsis invicta]
          Length = 155

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           T ++   I+  K  GQ+ L +  +++ + E +       V+EIG G GN+T  +L   A+
Sbjct: 14  TEVARQGILFNKDKGQHILKNPLVIQTMVEKAALRATDVVLEIGPGTGNMTVKMLD-KAK 72

Query: 72  KVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           KVI  E D +    L+     + + ++L+I+  D LK D   FF++      +AN+PY I
Sbjct: 73  KVIACEIDPRMVAELQKRVQGTVYQSKLQIVLGDVLKSDLP-FFDLC-----VANIPYQI 126

Query: 130 GTRLLFNWIS 139
            + L+F  +S
Sbjct: 127 SSPLVFKLLS 136


>gi|70606438|ref|YP_255308.1| dimethyladenosine transferase [Sulfolobus acidocaldarius DSM 639]
 gi|68567086|gb|AAY80015.1| ribosomal RNA adenine dimethylase [Sulfolobus acidocaldarius DSM
           639]
          Length = 222

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 34/189 (17%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           K  +GQ+FL D++I+KK+      +D  T  VIEIG+G G +T+ L     +  I IE D
Sbjct: 2   KNKLGQHFLNDISIIKKLI---SLVDHSTRPVIEIGSGNGVITKFL-----KPDIAIEID 53

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                        H    ++I  D   +        ++  +++++LPY I T      I 
Sbjct: 54  VSLI--------NHLRNYQLIIGDGRYLP-------TTRGQVVSSLPYYITTDFFHEAIK 98

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D        L L+ QK+  ++IT++  S     +S L  +  K ++   + P  F P+P
Sbjct: 99  LDN----IRKLVLIVQKDFIDKITSKSTS-----ISYLLNYYYKISLFDIVPPSAFSPNP 149

Query: 200 KVTSTVIHF 208
           KV S ++ F
Sbjct: 150 KVFSQLVVF 158


>gi|127199|sp|P10738|ERMB_ECOLX RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|150715|gb|AAA25634.1| 23S rRNA methylase [Plasmid pIP1527]
          Length = 245

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKSNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P P+V 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPRVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|127197|sp|P06571|ERMG_BACSH RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|142884|gb|AAA22419.1| rRNA methyltransferase [Lysinibacillus sphaericus]
          Length = 244

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK  F       +P +I  ++PYNI T ++   +       
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIV------- 115

Query: 146 FWESLT---LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           F  S T   L+ +    +R+     S     L++L       +++  I  + F P PKV 
Sbjct: 116 FESSATISYLIVEYGFAKRLLDTNRS-----LALLLMAEVDISILAKIPRYYFHPKPKVD 170

Query: 203 STVI 206
           S +I
Sbjct: 171 SALI 174


>gi|138752661|emb|CAM32752.1| MLS methylase [Streptococcus pneumoniae]
          Length = 245

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|3411260|gb|AAC31204.1| rRNA methylase [Lactobacillus reuteri]
          Length = 250

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|307092054|gb|ADN28362.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 16/109 (14%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++I +++G      V+EIG G G LT++LL  G R+V+ IEKD +    L++   
Sbjct: 2   DQNQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLAEFLRE--R 58

Query: 92  QHPNRLEIIQDDAL------KVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              ++LE++  DAL      K D+  +       ++++NLPY++ + +L
Sbjct: 59  FQNSKLELLHADALEFLKSEKRDWNDW-------KVVSNLPYSVASPIL 100


>gi|7595746|gb|AAF64431.1|AF229200_4 erythromycin resistance methylase [Enterococcus faecium]
 gi|9246953|gb|AAF86219.1|AF242872_2 ErmB [Enterococcus faecium]
          Length = 248

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PYN+ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYNLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|182684297|ref|YP_001836044.1| rRNA methylase [Streptococcus pneumoniae CGSP14]
 gi|182629631|gb|ACB90579.1| rRNA methylase [Streptococcus pneumoniae CGSP14]
          Length = 245

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|255690866|ref|ZP_05414541.1| rRNA adenine N-6-methyltransferase [Bacteroides finegoldii DSM
           17565]
 gi|260623500|gb|EEX46371.1| rRNA adenine N-6-methyltransferase [Bacteroides finegoldii DSM
           17565]
          Length = 244

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 15/181 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK  F       +P +I  N+PYNI T ++   +       
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGNIPYNISTNIIRKIV------- 115

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
           F  S T+ +   + E   A+        L++L       +++  I  + F P PKV S +
Sbjct: 116 FESSATISYL--IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173

Query: 206 I 206
           I
Sbjct: 174 I 174


>gi|189466914|ref|ZP_03015699.1| hypothetical protein BACINT_03296 [Bacteroides intestinalis DSM
           17393]
 gi|189435178|gb|EDV04163.1| hypothetical protein BACINT_03296 [Bacteroides intestinalis DSM
           17393]
          Length = 244

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 15/181 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK  F       +P +I  N+PYNI T ++   +       
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGNIPYNISTNIIRKIV------- 115

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
           F  S T+ +   + E   A+        L++L       +++  I  + F P PKV S +
Sbjct: 116 FESSATISYL--IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSVL 173

Query: 206 I 206
           I
Sbjct: 174 I 174


>gi|171694431|ref|XP_001912140.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947164|emb|CAP73969.1| unnamed protein product [Podospora anserina S mat+]
          Length = 386

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 10/148 (6%)

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           +LE+I  D +K+       +     +I+N PY I + L+F  ++    P       L+FQ
Sbjct: 100 KLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFKMLAMPNPP---RVAVLMFQ 151

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           +E  +R+ A+     Y RLSV   +      +  +    F P PKV S V+   P +   
Sbjct: 152 REFAKRLVAKPGDALYSRLSVNVNFWATCKHIMKVGKQNFKPPPKVESDVVRIEPLIGSA 211

Query: 216 P--CCLESLKKITQEAFGKRRKTLRQSL 241
                 +    + + AF ++ KTL  S 
Sbjct: 212 RPNIAFDEFDGLLRIAFNRKNKTLNASF 239


>gi|45758647|gb|AAS76623.1| Erm(40) [Mycobacterium mageritense]
          Length = 251

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 24/143 (16%)

Query: 26  GQNFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           GQNFL D     +I+K ++ ++GS     ++EIGAG G LT  +  LG R +  IE D++
Sbjct: 12  GQNFLCDRRVVADIVKIVSHTTGS-----IVEIGAGDGALTVPMQRLG-RPLTAIEIDRR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   ++ H           +  DF ++    +   ++ NLP+++ T +L   + + 
Sbjct: 66  RAERLARRTTAH----------VVTADFLRYRLPPTEHVVVGNLPFHLTTAILRRLLHS- 114

Query: 142 TWPPFWESLTLLFQKEVGERITA 164
              P W    LL Q EV  R  A
Sbjct: 115 ---PAWTDAVLLMQWEVARRRAA 134


>gi|2924303|emb|CAA57314.1| adenine methylase [Enterococcus hirae]
          Length = 245

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL +  +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|315645554|ref|ZP_07898678.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus vortex V453]
 gi|315279032|gb|EFU42342.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus vortex V453]
          Length = 287

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 17/185 (9%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           +  QN ++   ++  + + +      TV++IGAG G LT   L   A KV+ IE D    
Sbjct: 18  FPSQNMIISKRLIHDMIDLARIHPHETVLDIGAGAGALT-FPLAEKAAKVLAIEIDSVLI 76

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L D   +  N +E+ Q D L+         S P  ++AN+PY+I T +    +     
Sbjct: 77  HKLLDKMGERGN-IEVKQCDFLETSLP-----SKPFVVVANIPYSITTPIFGKLLHPAV- 129

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT--MMFDISPHVFFPSPKV 201
            P   ++ L+      E+  A+  + H  R   +  WR +    ++  +SP  F P PKV
Sbjct: 130 -PMQRAVILV------EKGAAKGFTSHSIRNPRILNWRMQYEIRLVRTVSPDHFAPPPKV 182

Query: 202 TSTVI 206
            S ++
Sbjct: 183 DSAIL 187


>gi|159039573|ref|YP_001538826.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora arenicola
           CNS-205]
 gi|157918408|gb|ABV99835.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora arenicola
           CNS-205]
          Length = 269

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 29/231 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + QNFL+D   + ++  ++       ++E+GAG G LT+ LL   +R++I  E D  
Sbjct: 15  RRVLSQNFLVDPAAVDRLIRAARPDPNRLLLEVGAGRGQLTR-LLAARSRRLIAYEVDPV 73

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L    +  P           + DF        P  ++ N+P+++ T  +  W  A 
Sbjct: 74  AGAELARTCADLPT------VTCRRADFLTAPPPRVPYDVVGNIPWSL-TSAVVRWCLAA 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT-------GWRTKATMMFDISPHV 194
           +      + TLL Q E      A+K S  YGR + LT        WR    +   +    
Sbjct: 127 S---GLRAATLLTQLEY-----ARKRSGAYGRWTRLTVLNWPEFSWR----LAGRVPRTA 174

Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243
           F P P+V + ++       P+     L + +++ +  F     +L  SL R
Sbjct: 175 FRPVPRVNAGILRIERRREPLLPGAALPAYRRMVELGFDGAGGSLAASLGR 225


>gi|392560|gb|AAA73396.1| adenine methylase [Streptococcus agalactiae]
 gi|30314839|emb|CAD70614.1| adenine methylase [Plasmid pIlo8]
          Length = 244

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  +   K + IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTIELDSHLF-- 63

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 64  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 113

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 114 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 168

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 169 SVLIKLTRHTTDVP 182


>gi|297561218|ref|YP_003680192.1| rRNA (adenine-N(6)-)-methyltransferase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845666|gb|ADH67686.1| rRNA (adenine-N(6)-)-methyltransferase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 266

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 14/208 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++   QNFL D    +++   SG      V+E+G G G LT+  L   AR+V+  E D +
Sbjct: 16  RRRFSQNFLADPGAARRVVAVSGIGPADLVVEVGPGEGALTR-FLAPAARRVLAYEIDPR 74

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L     +  + + ++     + DF +         ++ N+PY     ++   + A 
Sbjct: 75  LAERLSARYREPASGVRVV-----RADFTRVRPPRGEFHLVGNIPYARTADIVRWCLDAR 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                  S TL+ Q E   + T       + RL+VLT      ++   I    F P P+V
Sbjct: 130 G----LASATLVTQLEYARKRTGGFG--RWSRLTVLTWPEWSWSLAGRIDRQRFRPVPRV 183

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQ 227
            S ++       P+  P  +   +++ +
Sbjct: 184 DSGILVLRRRRTPLVDPGRMNGYRRLVE 211


>gi|253571409|ref|ZP_04848815.1| rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|251838617|gb|EES66702.1| rRNA methyltransferase [Bacteroides sp. 1_1_6]
          Length = 244

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 15/181 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK  F       +P +I  ++PYNI T ++   +       
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIV------- 115

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
           F  S T+ +   + E   A+        L++L       +++  I  + F P PKV ST+
Sbjct: 116 FESSATISYL--IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173

Query: 206 I 206
           I
Sbjct: 174 I 174


>gi|3800833|gb|AAC69328.1| rRNA methyltransferase PikR1 [Streptomyces venezuelae]
          Length = 336

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 30/212 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ +GQNFL D   ++ +  +    DG  V+EIG G G +T+ L+      V V+E D  
Sbjct: 17  RRELGQNFLQDDRAVRNLV-THVEGDGRNVLEIGPGKGAITEELVR-SFDTVTVVEMDPH 74

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +   ++        R+ + Q D L  DF    +I +   ++ N+P+ I T++L + + + 
Sbjct: 75  WAAHVR--RKFEGERVTVFQGDFL--DFRIPRDIDT---VVGNVPFGITTQILRSLLEST 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH------VF 195
                W+S  L+ Q EV     A+K +   G   + T W       ++ + H       F
Sbjct: 128 N----WQSAALIVQWEV-----ARKRAGRSGGSLLTTSW----APWYEFAVHDRVRASSF 174

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227
            P P+V   V+       P P   ES  +  Q
Sbjct: 175 RPMPRVDGGVLTI--RRRPQPLLPESASRAFQ 204


>gi|79946|pir||A27507 DNA adenine methylase (EC 2.1.1.-), ORF2 and ORF3 - Enterococcus
           faecalis plasmid pAMbeta1 (fragments)
          Length = 286

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|297720837|ref|NP_001172781.1| Os02g0122900 [Oryza sativa Japonica Group]
 gi|255670560|dbj|BAH91510.1| Os02g0122900 [Oryza sativa Japonica Group]
          Length = 131

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++++ S  + +P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL  
Sbjct: 51  TIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLDA 110

Query: 69  GARKVIVIEK 78
           GA  V  +EK
Sbjct: 111 GA-TVFAVEK 119


>gi|854706|gb|AAC37034.1| rRNA methyltransferase [Bacteroides thetaiotaomicron]
          Length = 244

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 15/181 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK  F       +P +I  ++PYNI T ++   +   +   
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIVFESS--- 119

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
              +++ L  +    ++    N      L++L       +++  I  + F P PKV ST+
Sbjct: 120 --ATISYLIVEYGFAKMLLDTNRS----LALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173

Query: 206 I 206
           I
Sbjct: 174 I 174


>gi|167521732|ref|XP_001745204.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776162|gb|EDQ89782.1| predicted protein [Monosiga brevicollis MX1]
          Length = 229

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
           ++TL+FQ+E GER+ A  NS H  ++S         +  + +  +VF P P+V + V+H 
Sbjct: 82  AMTLIFQREYGERLFAPPNSLHRAKISAFVQQYCNVSPGYLLPRNVFVPEPRVDTMVVHL 141

Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS--I 266
                P        + + +  F   R+ LR  ++ L G     +A    ++ A +L    
Sbjct: 142 ESKPEPPAVDPAVFEDVLRHLFTTPRRLLRNGMQPLLGVATCAEA---DDVMAAHLPWFD 198

Query: 267 EDFCRITNILTDN-QDIAI 284
            D CR  ++  D   D+A+
Sbjct: 199 RDNCRPKSVHNDQLTDLAL 217



 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 9  SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           L  +L  + +  KK + QNF+L      K   ++G L    V+EIG GPG+LT+ +L  
Sbjct: 10 GLPELLRIFNVRAKKKLSQNFILHQPCADKFVRAAGDLRDRVVVEIGGGPGSLTRAILEA 69

Query: 69 GARK 72
            R+
Sbjct: 70 ARRE 73


>gi|323142569|ref|ZP_08077385.1| rRNA adenine N-6-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322413002|gb|EFY03905.1| rRNA adenine N-6-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 262

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 25  SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 81

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 82  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 131

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 132 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 186

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 187 SVLIKLTRHTTDVP 200


>gi|307092024|gb|ADN28347.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307092058|gb|ADN28364.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 4/105 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++I  ++       V+EIG G G LT++LL   A +V+ IE D +    L++  S
Sbjct: 2   DQNQLRRIVAAAELTPADKVLEIGPGLGPLTELLLE-NAGEVLAIEMDGRLVEYLRERFS 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
               RLE++  DALK+   +  + S   +++ANLPY++ + +L  
Sbjct: 61  N--PRLELLHADALKILRHEPRDWSD-WKLVANLPYSVASPILVE 102


>gi|155965920|gb|ABU40942.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 231

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 5   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 61

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 62  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 111

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 112 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 166

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 167 SVLIKLTRHTTDVP 180


>gi|134285024|gb|ABO69573.1| rRNA methyltransferase [pGERM gene disruption vector]
          Length = 244

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 22/250 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAGLVK-RCNFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK  F       +P +I  ++PYNI T ++   +   +   
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIVFESS--- 119

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
              +++ L  +    ++    N      L++L       +++  I  + F P PKV ST+
Sbjct: 120 --ATISYLIVEYGFAKMLLDTNRS----LALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264
           I  +    P     +  KK   E F    K + +  ++L  +N  ++A     +    N+
Sbjct: 174 I--VLKRKPAKMAFKERKK--YETFV--MKWVNKEYEKLFTKNQFNKALKHARIYDINNI 227

Query: 265 SIEDFCRITN 274
           S E F  + N
Sbjct: 228 SFEQFVSLFN 237


>gi|187729640|ref|YP_001798641.1| rRNA adenine N-6-methyltransferase [Lactococcus garvieae]
 gi|222142618|ref|YP_002559373.1| rRNA adenine N-6-methyltransferase [Macrococcus caseolyticus
           JCSC5402]
 gi|256959343|ref|ZP_05563514.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis DS5]
 gi|257086939|ref|ZP_05581300.1| rRNA methylase [Enterococcus faecalis D6]
 gi|261209325|ref|ZP_05923706.1| rRNA methylase [Enterococcus faecium TC 6]
 gi|269124242|ref|YP_003305352.1| AM7 [Enterococcus faecalis]
 gi|289567334|ref|ZP_06447709.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium D344SRF]
 gi|296450891|ref|ZP_06892640.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296878629|ref|ZP_06902634.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile
           NAP07]
 gi|307268297|ref|ZP_07549679.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX4248]
 gi|313247831|ref|YP_004032993.1| erythromycin resistance protein [Enterococcus faecalis]
 gi|61223741|sp|P0A4D5|ERM1_ENTFA RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|61223742|sp|P0A4D6|ERM1_CLOPE RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|14211231|gb|AAK57385.1|AF372620_1 ribosomal RNA methylase [glnQ allelic exchange vector pAG101]
 gi|15384305|gb|AAK96238.1|AF406971_3 erythromycin resistance methylase [Enterococcus hirae]
 gi|19568834|gb|AAL91930.1|AF480459_1 ErmB [Bacillus cereus]
 gi|20522042|gb|AAM26278.1|AF435436_1 Erm(B) [Cloning vector pAM434]
 gi|22595310|gb|AAN02496.1|AF405696_4 erythromycin resistance protein [Reporter vector pALH109]
 gi|22595315|gb|AAN02500.1|AF405697_4 erythromycin resistance protein [Reporter vector pALH122]
 gi|22595320|gb|AAN02504.1|AF405698_4 erythromycin resistance protein [Reporter vector pVA838]
 gi|40558|emb|CAA41221.1| ribosomal RNA methylase [Clostridium perfringens]
 gi|47020|emb|CAA68299.1| unnamed protein product [Enterococcus faecalis]
 gi|144783|gb|AAC36955.1| RNA methylase [Shuttle vector pJIR751]
 gi|208134|gb|AAA73116.1| RNA methylase [unidentified cloning vector]
 gi|220962|dbj|BAA14385.1| MLS resistance protein [synthetic construct]
 gi|841202|gb|AAC43480.1| ErmBP [Clostridium perfringens]
 gi|2745828|gb|AAB94755.1| adenine methylase [Cloning vector pIL252]
 gi|2773394|gb|AAB96789.1| adenine methylase [Cloning vector pIL253]
 gi|3132863|gb|AAC16408.1| erythromycin resistance gene [Shuttle vector pJIR1457]
 gi|3138989|gb|AAD11463.1| rRNA adenine N-6-methyltransferase [synthetic construct]
 gi|3320598|gb|AAC83650.1| adenine methylase [Integrational vector pMUTIN2]
 gi|5459333|emb|CAB50726.1| adenin-N6-methylase [Expression vector pERM-ex1]
 gi|5459338|emb|CAB50711.1| adenin-N6-methylase [Cloning vector pAMY-em1]
 gi|6979875|gb|AAF34637.1| ErmAM [Shuttle vector pHS17]
 gi|9963916|gb|AAG09762.1| erythromycin resistance methylase [Staphylococcus intermedius]
 gi|13442778|dbj|BAB39762.1| Erm [Shuttle vector pVA838]
 gi|15986369|emb|CAC82333.1| erythromycin methylase [Clostridium difficile]
 gi|25900787|emb|CAD57776.1| erythromycin resistance protein [Thermosensitive cloning vector
           pTN1]
 gi|31322220|gb|AAN87035.1| erythromycin-resistant methylase [Streptococcus gallolyticus]
 gi|31873066|gb|AAP60029.1| Erm [Cloning vector pMSP3535]
 gi|34558744|gb|AAQ75101.1| Erm [Shuttle vector pMSP3535-FT]
 gi|34558751|gb|AAQ75107.1| Erm [Shuttle vector pMSP3535-RT]
 gi|37595571|gb|AAQ94627.1| 23S rRNA methylase [Arcanobacterium pyogenes]
 gi|50593498|gb|AAT79488.1| ErmAM [Mutagenesis vector pCAM45]
 gi|51890404|dbj|BAD42832.1| erythromycin resistance gene [Shuttle vector pUCYIT356N]
 gi|57547343|gb|AAW52436.1| adenine methylase [plasmid vector pKS1]
 gi|67511472|emb|CAI99373.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes]
 gi|73665560|gb|AAZ79487.1| erythromycin resistance protein [Mutagenesis vector pNZ5319]
 gi|78482803|emb|CAI91552.1| rRNA methyltransferase [Clostridium difficile]
 gi|93007463|gb|ABE97201.1| ribosomal RNA adenine N-6-methyltransferase [Streptococcus
           thermophilus]
 gi|134269470|emb|CAL69877.1| Erm(B) [Streptococcus pyogenes]
 gi|146188922|emb|CAJ21502.1| ErmB protein [Clostridium difficile]
 gi|158421230|gb|ABW37926.1| Erm [Cloning vector pAMS749-12]
 gi|159023682|gb|ABW87265.1| ribosomal RNA adenine dimethylase [Insertion vector pGh9:ISS1]
 gi|171854424|dbj|BAG16431.1| putative rRNA adenine N-6-methyltransferase [Lactococcus garvieae]
 gi|222121387|dbj|BAH18720.1| rRNA adenine N-6-methyltransferase [Macrococcus caseolyticus
           JCSC5402]
 gi|222478234|gb|ACM62691.1| ErmC [Shuttle vector pMSP3535H3]
 gi|225631881|emb|CAR79030.1| adenine methylase [Cloning shuttle vector pA13]
 gi|226442583|dbj|BAH56452.1| MLS resistance protein [Shuttle vector pLES003]
 gi|237857402|gb|ACR23640.1| rRNA methylase [synthetic construct]
 gi|238481675|gb|ACR43891.1| MLS resistance protein [Shuttle vector pMTL82254]
 gi|256949839|gb|EEU66471.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis DS5]
 gi|256994969|gb|EEU82271.1| rRNA methylase [Enterococcus faecalis D6]
 gi|260076697|gb|EEW64443.1| rRNA methylase [Enterococcus faecium TC 6]
 gi|260161316|emb|CAZ39284.1| MLS methylase [Streptococcus suis]
 gi|267822506|gb|ACY79534.1| AM7 [Enterococcus faecalis]
 gi|289160874|gb|EFD08799.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium D344SRF]
 gi|290791122|gb|ADD63342.1| rRNA adenine N-6-methyltransferase [Cloning vector pAE1]
 gi|296260263|gb|EFH07109.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296430436|gb|EFH16278.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile
           NAP07]
 gi|299892748|gb|ADJ57693.1| ErmAM [Expression vector pT1NX]
 gi|306515387|gb|EFM83920.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX4248]
 gi|312836998|dbj|BAJ34884.1| erythromycin resistance protein [Enterococcus faecalis]
 gi|314912611|gb|ADT64003.1| erythromycin resistance protein [Group II intron-based directed
           mutagenesis plasmid pMTL007C-E2]
 gi|315026359|gb|EFT38291.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX2137]
 gi|323650671|gb|ADX97419.1| Erm resistance protein [Clostridium acetobutylicum]
 gi|324029109|gb|ADY16710.1| erythromycin resistance protein [Clostridium acetobutylicum]
          Length = 245

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|314953278|ref|ZP_07856210.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133A]
 gi|313594677|gb|EFR73522.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133A]
          Length = 249

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 12  SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 68

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 69  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 118

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 119 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 173

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 174 SVLIKLTRHTTDVP 187


>gi|322495324|emb|CBZ30628.1| putative rRNA dimethyltransferase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 464

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 17  YKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           YK+    ++    Q F+L+L     ++  ++ ++ +     ++E+G G G+LT+ LLT  
Sbjct: 39  YKVPHAGFLAKYDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGSLTRSLLTRP 98

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              V+ IE D++F P L+ I +   N+ + +  D LKVD  +  N + P  + AN+
Sbjct: 99  CVGVLGIEVDERFNPHLEQIRNYTNNKFQWVTADVLKVDELELLNSAFPHFVKANV 154



 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 15/174 (8%)

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWP-----PFWESLTLLF-QKEVGERITAQKN 167
           N ++ + +IANLP+ I T LL  + +AD         F      +F Q+EV ERI A   
Sbjct: 255 NGNAKVEVIANLPFEIITELLMRY-AADCSQHRGLFAFGRVPVHVFTQREVAERILAPAG 313

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227
           S  + RLSVL        +        ++P  +V   ++   P   P+   L++   I  
Sbjct: 314 SVQFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAHGLDASTLIHF 373

Query: 228 EAF----GKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRIT 273
                  G R  T+ +SL R     L    L +  ++  +   +LS+ +  R+ 
Sbjct: 374 TNLLMKPGLRAATVHKSLSRFAPAELVQYMLQELRMDGAMTVLDLSVVEVTRLA 427


>gi|307091984|gb|ADN28327.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 114

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V+EIGAGPG +T  L   G R +I IE D ++   L++   +HP R+ I+  D L +
Sbjct: 17  GDLVVEIGAGPGAITFALARRGLR-IIAIEPDPEWAKRLRERVGEHP-RIRIVNADFLSI 74

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLL 134
           +       + P R++ +LP+   T +L
Sbjct: 75  ELP-----AEPFRVVGSLPFGRTTDML 96


>gi|146100568|ref|XP_001468894.1| rRNA dimethyltransferase [Leishmania infantum]
 gi|134073263|emb|CAM71986.1| putative rRNA dimethyltransferase [Leishmania infantum JPCM5]
          Length = 463

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 17  YKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           YK+    ++    Q F+L+L     ++  ++ ++ +     ++E+G G G+LT+ LLT  
Sbjct: 38  YKVPHAGFLAKYDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGSLTRSLLTRP 97

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              V+ IE D++F P L+ I S   N+ + +  D LKVD  +    + P  + AN+
Sbjct: 98  CVGVLGIEVDERFSPHLEQIRSYTSNKFQWVTADVLKVDELELLKSAFPHFVKANI 153



 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 9/147 (6%)

Query: 114 NISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWE----SLTLLFQKEVGERITAQKNS 168
           N ++ + +IANLP+ I T LL  + +        +      + +  Q+EV ERI A   S
Sbjct: 254 NGNAKVEVIANLPFEIITELLMRYAVDCSQHRGLFAFGRVPVHVFTQREVAERILAPAGS 313

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228
             + RLSVL        +        ++P  +V   ++   P   P+   L++   I   
Sbjct: 314 VQFSRLSVLCQCFFHVRLKQTFLDQTYYPRTEVEGAMLTLEPRSVPLAHGLDASTLIHFT 373

Query: 229 AF----GKRRKTLRQSLKRLGGENLLH 251
                 G R  T+ +SL R     L+H
Sbjct: 374 NLLMKPGLRAATVHKSLSRFAPAELVH 400


>gi|322502902|emb|CBZ37984.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 463

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 17  YKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           YK+    ++    Q F+L+L     ++  ++ ++ +     ++E+G G G+LT+ LLT  
Sbjct: 38  YKVPHAGFLAKYDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGSLTRSLLTRP 97

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              V+ IE D++F P L+ I S   N+ + +  D LKVD  +    + P  + AN+
Sbjct: 98  CVGVLGIEVDERFSPHLEQIRSYTSNKFQWVTADVLKVDELELLKSAFPHFVKANI 153



 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 9/147 (6%)

Query: 114 NISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWE----SLTLLFQKEVGERITAQKNS 168
           N ++ + +IANLP+ I T LL  + +        +      + +  Q+EV ERI A   S
Sbjct: 254 NGNAKVEVIANLPFEIITELLMRYAVDCSQHRGLFAFGRVPVHVFTQREVAERILAPAGS 313

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228
             + RLSVL        +        ++P  +V   ++   P   P+   L++   I   
Sbjct: 314 VQFSRLSVLCQCFFHVRLKQTFLDQTYYPRTEVEGAMLTLEPRSVPLAHGLDASTLIHFT 373

Query: 229 AF----GKRRKTLRQSLKRLGGENLLH 251
                 G R  T+ +SL R     L+H
Sbjct: 374 NLLMKPGLRAATVHKSLSRFAPAELVH 400


>gi|307092062|gb|ADN28366.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++IA ++       ++EIG G G LT  L+  GA  V+ IE+D++    L+    
Sbjct: 2   DQNQLRRIAAAAELKPEDNILEIGPGLGPLTAFLVESGA-NVLAIERDRRLCECLERAFP 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           Q   + +++ DDAL  D+ K     +  +++ANLPY++ + +L   ++    PP
Sbjct: 61  QS-AKFKLLHDDAL--DYVKKNRDWAGWKLVANLPYSVASPILVE-LAGAAMPP 110


>gi|156633671|gb|ABU90832.1| rRNA adenine N-6-methyltransferase [Shuttle vector pMTL007]
          Length = 257

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 20  SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 76

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 77  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 126

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 127 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 181

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 182 SVLIKLTRHTTDVP 195


>gi|157363926|ref|YP_001470693.1| ribosomal RNA adenine methylase transferase [Thermotoga lettingae
           TMO]
 gi|157314530|gb|ABV33629.1| ribosomal RNA adenine methylase transferase [Thermotoga lettingae
           TMO]
          Length = 248

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 14/183 (7%)

Query: 26  GQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           GQ+FL D +   K+ E  S  +    V+EIGAG G +T  LL  G + V+  E DQ+   
Sbjct: 5   GQHFLNDKSTAIKLVELISHDVSNRRVVEIGAGKGFITGFLLQAGFQ-VLAYEIDQK--- 60

Query: 85  ILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           + K +  +  +  L++   D L+   E+  NI+     I ++PY I ++++   I     
Sbjct: 61  LAKQLCQKFASPGLKVYVKDFLQSTPEEIENIN---LCIGSIPYQISSKIIIKLIELG-- 115

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              ++ + L+ QKE  E++ A+     Y  ++VL         + ++    F P+PKV S
Sbjct: 116 ---FQKVVLIVQKEFAEKLVAEPGEKRYSFITVLAQSFYDVQKVSNLPKSCFSPAPKVDS 172

Query: 204 TVI 206
            ++
Sbjct: 173 AIL 175


>gi|31321898|gb|AAK68630.1| erythromycin resistance protein [synthetic construct]
          Length = 251

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 103/254 (40%), Gaps = 29/254 (11%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S +I    H   +P     L       +  R        ++L  +N  HQA    + +  
Sbjct: 170 SVLIKLTRHTTDVPDKYWKLYTYFVSKWVNR------EYRQLFTKNQFHQAM--KHAKVN 221

Query: 263 NLSIEDFCRITNIL 276
           NLS   + ++ +I 
Sbjct: 222 NLSTVTYEQVLSIF 235


>gi|32470479|ref|NP_863164.1| erythromycin resistance transferase [Enterococcus faecium]
 gi|69244936|ref|ZP_00603126.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecium DO]
 gi|257880618|ref|ZP_05660271.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,230,933]
 gi|257883423|ref|ZP_05663076.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,502]
 gi|257892145|ref|ZP_05671798.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,410]
 gi|257895032|ref|ZP_05674685.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,408]
 gi|258615894|ref|ZP_05713664.1| erythromycin resistance transferase [Enterococcus faecium DO]
 gi|260558614|ref|ZP_05830804.1| rRNA methylase [Enterococcus faecium C68]
 gi|309775385|ref|ZP_07670389.1| rRNA adenine N-6-methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|314940046|ref|ZP_07847232.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133a04]
 gi|314948330|ref|ZP_07851721.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0082]
 gi|319935238|ref|ZP_08009677.1| rRNA adenine N-6-methyltransferase [Coprobacillus sp. 29_1]
 gi|320152807|ref|YP_004172630.1| ErmB [Enterococcus faecium]
 gi|11991160|gb|AAG42227.1|AF299292_1 erythromycin resistance methylase [Staphylococcus intermedius]
 gi|21886748|gb|AAM77891.1|AF516335_11 ermB methylase [Enterococcus faecium]
 gi|9963914|gb|AAG09761.1| erythromycin resistance methylase [Staphylococcus intermedius]
 gi|28849340|gb|AAO52847.1| erythromycin resistance transferase [Enterococcus faecium]
 gi|68196102|gb|EAN10533.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecium DO]
 gi|257814846|gb|EEV43604.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,230,933]
 gi|257819081|gb|EEV46409.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,502]
 gi|257828505|gb|EEV55131.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,410]
 gi|257831411|gb|EEV58018.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,408]
 gi|260075352|gb|EEW63664.1| rRNA methylase [Enterococcus faecium C68]
 gi|281336200|gb|ADA62749.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) [Enterococcus faecium]
 gi|308916861|gb|EFP62597.1| rRNA adenine N-6-methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|313640723|gb|EFS05303.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133a04]
 gi|313645247|gb|EFS09827.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0082]
 gi|319739759|gb|ADV60077.1| ErmB [Enterococcus faecium]
 gi|319809888|gb|EFW06276.1| rRNA adenine N-6-methyltransferase [Coprobacillus sp. 29_1]
 gi|323464898|gb|ADX77051.1| rRNA adenine N-6-methyltransferase [Staphylococcus pseudintermedius
           ED99]
          Length = 245

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|314997282|ref|ZP_07862255.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133a01]
 gi|313588632|gb|EFR67477.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133a01]
          Length = 249

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 12  SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 68

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 69  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 118

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 119 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 173

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 174 SVLIKLTRHTTDVP 187


>gi|113196880|gb|ABI31740.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196884|gb|ABI31742.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196888|gb|ABI31744.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196892|gb|ABI31746.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
          Length = 219

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|40807669|gb|AAR92235.1| Erm(39) [Mycobacterium fortuitum]
          Length = 246

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 27/222 (12%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D  ++  I        G  ++EIGAG G LT  L  LG R +  IE D      
Sbjct: 12  GQNFLRDRRVVGDIVRMVSHTAG-PIVEIGAGDGALTLPLQRLG-RPLTAIEIDLHRARR 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L D ++      E+I  D L+    +     +P  ++ NLP+++ T +L   +  +    
Sbjct: 70  LADRTTA-----EVIATDFLRYRLPR-----TPHVVVGNLPFHLTTAILRRLLHENG--- 116

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG-WRT--KATMMFDISPHVFFPSPKVT 202
            W    LL Q EV  R          G  +++T  W    +  +   +S   F P P V 
Sbjct: 117 -WTDAILLVQWEVARRRAG------VGGATMMTAQWWPWFEFGLARKVSADAFRPRPSVD 169

Query: 203 STVIHFIPHLNP-IPCC-LESLKKITQEAFGKRRKTLRQSLK 242
           + ++       P +P     + + +    F  R + L Q L+
Sbjct: 170 AGLLTIQRRAEPLLPWADRRAYQALVHRVFTGRGRGLAQILR 211


>gi|127202|sp|P21236|ERM_STRPN RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=ErmAM; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|133919252|emb|CAL92507.1| MLS methylase [Streptococcus pneumoniae]
 gi|162286810|emb|CAP17168.1| erythromycin ribosome methylase [Streptococcus pneumoniae]
          Length = 245

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|239928180|ref|ZP_04685133.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291436510|ref|ZP_06575900.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339405|gb|EFE66361.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces ghanaensis ATCC
           14672]
          Length = 259

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 17/187 (9%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITV---IEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           + + QNFL D    ++ A  +    G  V   +E+GAG G LT +L  L  R++   E D
Sbjct: 9   RALSQNFLADRATARRFARLAVP-HGEPVPLLLEVGAGKGALTDVLAPL-CRELHAYEID 66

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +  P L+   S  P+ + ++       DF       +P  +  N+P++  T  + +W  
Sbjct: 67  PRLVPTLRGRFSGTPH-VRVV-----GADFLAAHPPRTPFAVAGNVPFS-RTAAVVDWCL 119

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     TLL Q E   + T       + RL+VLT  R +  ++  +    F P P
Sbjct: 120 RA---PRLTDATLLTQLEYARKRTGDHG--RWTRLTVLTWPRHEWRLLARVDRRSFRPVP 174

Query: 200 KVTSTVI 206
           +V + V+
Sbjct: 175 RVDAGVV 181


>gi|67511468|emb|CAI99371.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae]
          Length = 245

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|113196878|gb|ABI31739.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
          Length = 219

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SALIKLTRHTTDVP 183


>gi|126699621|ref|YP_001088518.1| rRNA adenine N-6-methyltransferase [Clostridium difficile 630]
 gi|126699626|ref|YP_001088523.1| rRNA adenine N-6-methyltransferase [Clostridium difficile 630]
 gi|5019745|gb|AAD37840.1|AF109075_2 rRNA methyltransferase Erm1B [Clostridium difficile]
 gi|5019748|gb|AAD37843.1|AF109075_5 rRNA methyltransferase Erm2B [Clostridium difficile]
 gi|15986374|emb|CAC82337.1| erythromycin methylase [Clostridium difficile]
 gi|115251058|emb|CAJ68889.1| ribosomal RNA adenine N-6-methyltransferase [Clostridium difficile]
 gi|115251063|emb|CAJ68894.1| ribosomal RNA adenine N-6-methyltransferase [Clostridium difficile]
          Length = 245

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIKQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SALIKLTRHTTDVP 183


>gi|59938864|gb|AAX12191.1| erythromycin ribosome methylase [Enterococcus faecium]
          Length = 243

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 6   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 62

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 63  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 112

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 113 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 167

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 168 SVLIKLTRHTTDVP 181


>gi|113196882|gb|ABI31741.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196890|gb|ABI31745.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
          Length = 219

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|23098376|ref|NP_691842.1| erythromycin resistance protein [Oceanobacillus iheyensis HTE831]
 gi|22776602|dbj|BAC12877.1| erythromycin resistance protein [Oceanobacillus iheyensis HTE831]
          Length = 244

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 15/180 (8%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I + +       VIEIG+G G+ T+ L+ + +R V  IE D+    + 
Sbjct: 10  QNFITSKKHVKEILDHTSINKQDNVIEIGSGKGHFTKELVKM-SRWVHSIEIDEDLCQVT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           +       N +++I  D LK +F K    +   +I  N+P+NI T ++   I++++   F
Sbjct: 69  QKAVKPFQN-IKVIHTDILKFNFHK----NKDYKIFGNIPFNISTDIV-KKIASESQSKF 122

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
                L+ +K   +R+   K +     L +L        ++  +    F P P V S +I
Sbjct: 123 S---YLIVEKGFAKRLQNTKRA-----LGLLLMVEMDIKILTKVPRTYFHPRPSVDSVLI 174


>gi|307092040|gb|ADN28355.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 16/111 (14%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D   L++I +++G      V+EIG G G LT++LL  G R+V+ IEKD +    L++   
Sbjct: 2   DQTQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLVEFLRE--R 58

Query: 92  QHPNRLEIIQDDAL------KVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++LE++  DAL      K D+  +       ++++NLPY++ + +L  
Sbjct: 59  FQNSKLELLHADALEFLKSEKRDWNDW-------KVVSNLPYSVASPILVE 102


>gi|149003646|ref|ZP_01828511.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69]
 gi|147758378|gb|EDK65378.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69]
          Length = 73

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + QKEV +RI+AQ N+  YG LS+   +   A + F +   VF P+P V S ++  +   
Sbjct: 1   MMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRP 60

Query: 213 NP 214
            P
Sbjct: 61  EP 62


>gi|297156444|gb|ADI06156.1| rRNA-adenine-N6-methyltransferase [Streptomyces bingchenggensis
           BCW-1]
          Length = 277

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 34/246 (13%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           + ++ + QNFL+D   + ++  ++       ++E+G G G LT+ L     R++I  E D
Sbjct: 22  LARRTLSQNFLVDPAAVARVVRAARPRHDGLLVEVGMGKGALTEALAPR-CRELIGYEID 80

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR---IIANLPYNIGTRLLFN 136
           +   P L         RL +     ++V  + F     P+    ++ N+PY   + ++  
Sbjct: 81  RHLIPGL---------RLRLAAHSHVRVVHQDFLTARPPLEPFAVVGNVPYARTSEIVDW 131

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------I 190
            + A    P   S T L Q E      A+K +  YGR S+LT    ++   FD      +
Sbjct: 132 CLRA----PRLTSATFLTQLEY-----ARKRTGDYGRWSLLT---VRSWPDFDWQLCGRV 179

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
               F P P+V S ++       P+        + +++ +  F     TL  SL+R    
Sbjct: 180 PRGAFRPVPRVDSGILRLTRRPRPLLTGAAERAAYERMVELGFSGVGGTLYASLRRAHPA 239

Query: 248 NLLHQA 253
             L +A
Sbjct: 240 RRLDRA 245


>gi|237710832|ref|ZP_04541313.1| rRNA methylase [Bacteroides sp. 9_1_42FAA]
 gi|317474076|ref|ZP_07933354.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA]
 gi|229455554|gb|EEO61275.1| rRNA methylase [Bacteroides sp. 9_1_42FAA]
 gi|316909759|gb|EFV31435.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 245

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T    +++F   
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQIIKKVVFESH 118

Query: 139 SADTWPPFWESL---TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           ++D +    E     TL   + +G                +L   +     +  +    F
Sbjct: 119 ASDIYLIVAEGFYKGTLDIHRTLG----------------LLLHTQVSIQQLLKLPAECF 162

Query: 196 FPSPKVTSTVIHFIPHLNPIP 216
            P PKV S +I    H   +P
Sbjct: 163 HPKPKVNSVLIKLTRHTTDVP 183


>gi|237725694|ref|ZP_04556175.1| erythromycin resistance determinant [Bacteroides sp. D4]
 gi|298385271|ref|ZP_06994830.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 1_1_14]
 gi|229435502|gb|EEO45579.1| erythromycin resistance determinant [Bacteroides dorei 5_1_36/D4]
 gi|298262415|gb|EFI05280.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 1_1_14]
          Length = 253

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 16  SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 72

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T    +++F   
Sbjct: 73  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQIIKKVVFESH 126

Query: 139 SADTWPPFWESL---TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           ++D +    E     TL   + +G                +L   +     +  +    F
Sbjct: 127 ASDIYLIVEEGFYKGTLDIHRTLG----------------LLLHTQVSIQQLLKLPAECF 170

Query: 196 FPSPKVTSTVIHFIPHLNPIP 216
            P PKV S +I    H   +P
Sbjct: 171 HPKPKVNSVLIKLTRHTTDVP 191


>gi|87159879|ref|YP_492693.1| rRNA adenine N-6-methyltransferase
           (macrolide-lincosamide-streptogramin B resistance
           protein) [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87125853|gb|ABD22972.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
          Length = 244

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 24/251 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ + E  +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYEFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I     LN     +    K     F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226

Query: 264 LSIEDFCRITN 274
           +S E F  + N
Sbjct: 227 ISFEQFLSLFN 237


>gi|307091950|gb|ADN28310.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 119

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 4/115 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDI 89
           +D N+ +KIA+S        V+EIG G G LT+ L     R+++++E D +    ++++ 
Sbjct: 1   IDPNLQRKIADSIAPTADDEVLEIGPGRGALTRHLAP-RVRRLVLVELDNELARRLIEEY 59

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +S   + + ++    L +  E   +  + +++I N+PYNI T ++F+ +     P
Sbjct: 60  ASD--DAVHVVHGSVLDIALEDVSSDPARLKVIGNIPYNITTPIIFHLLEHRPRP 112


>gi|37962668|gb|AAR05653.1| ErmB [Bacteroides uniformis]
          Length = 245

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T    +++F   
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQIIKKVVFESH 118

Query: 139 SADTWPPFWESL---TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           ++D +    E     TL   + +G                +L   +     +  +    F
Sbjct: 119 ASDIYLIVEEGFYKGTLDIHRTLG----------------LLLHTQVSIQQLLKLPAECF 162

Query: 196 FPSPKVTSTVIHFIPHLNPIP 216
            P PKV S +I    H   +P
Sbjct: 163 HPKPKVNSVLIKLTRHTTDVP 183


>gi|82749774|ref|YP_415516.1| rRNA methylase [Staphylococcus saprophyticus]
 gi|82653299|emb|CAJ43792.1| rRNA methylase [Staphylococcus saprophyticus]
          Length = 244

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 23/185 (12%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T    +++F  I+ +
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKVVFESIADE 122

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           ++        L+ + E  +R+   K S     L++L       +++  +    F P PKV
Sbjct: 123 SY--------LIVEYEFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169

Query: 202 TSTVI 206
            S++I
Sbjct: 170 NSSLI 174


>gi|307092048|gb|ADN28359.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 16/109 (14%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++I +++G      V+EIG G G LT++L   G R+V+ IEKD +    L++   
Sbjct: 2   DQNQLRRIVDAAGLPQTDKVLEIGPGLGPLTELLPENG-REVLAIEKDARLVEFLRERFQ 60

Query: 92  QHPNRLEIIQDDAL------KVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              ++LE++  DAL      K D+  +       ++++NLPY++ + +L
Sbjct: 61  N--SKLELLHADALEFLKSEKRDWNDW-------KVVSNLPYSVASPIL 100


>gi|119571769|gb|EAW51384.1| dimethyladenosine transferase, isoform CRA_a [Homo sapiens]
          Length = 152

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 13/123 (10%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +   
Sbjct: 34  IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVA 92

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P  ++L+++  D LK D   FF+       +ANLPY +     + ++S   
Sbjct: 93  ELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQV----CYTYVSKRI 142

Query: 143 WPP 145
            PP
Sbjct: 143 CPP 145


>gi|23499331|gb|AAN37395.1| erythromycin-resistant methylase [Streptococcus pyogenes]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I + +       +IEIG+G G+ T+ L+ +  R V  IE D+      
Sbjct: 10  QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K       N +++I +D LK  F K    ++  +I  N+PYNI T ++   I+ D+   +
Sbjct: 69  KKAVESFQN-IKVIHEDILKFSFPK----NTDYKIFGNIPYNISTDIV-KKIAFDSQAKY 122

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
                L+ ++   +R+   + +     L +L        ++  +    F P P V S +I
Sbjct: 123 S---YLIVERGFAKRLQNTQRA-----LGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174


>gi|269839605|ref|YP_003324297.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791335|gb|ACZ43475.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 331

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 107/252 (42%), Gaps = 19/252 (7%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           ++ QNFL    ++  + +SS       V EIG G G +T+ L     R+V+ IEKD    
Sbjct: 48  FLSQNFLRSRQLVDYLLQSSDIGPEDIVYEIGPGRGIITERLARR-CREVVAIEKDPSLV 106

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L+   +  PN L +++ D L+ D  +     S  ++ +N P++I  +++     A   
Sbjct: 107 ARLRTELADLPNVL-VLEGDFLEHDLPR-----SRYKVFSNPPFSITAQIVQKLTGAPRP 160

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P   E   L+ Q+E   R      +P     SVL       ++ +      F P P V  
Sbjct: 161 P---EDTYLIVQQEAAWRYLG---TPRETLSSVLLKADFVPSITYRFRREDFHPHPGVEV 214

Query: 204 TVIHFI-PHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL----KRLGGENLLHQAGIET 257
            ++  +    +P+P  +  + +      F   R +L+++L     R G + L  +  +  
Sbjct: 215 VMLRLLRREADPLPSGMRQVYRDFVTYGFTAWRPSLKETLGPLFARSGVDRLWKRLDLRP 274

Query: 258 NLRAENLSIEDF 269
           +    +L+ E +
Sbjct: 275 DATPTSLAFEQW 286


>gi|149409344|ref|XP_001510710.1| PREDICTED: similar to mitochondrial transcription factor b1,
           partial [Ornithorhynchus anatinus]
          Length = 156

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCL 219
           R+TA   S    RLS++  +       F I    F P P+V   VIHF P + P I    
Sbjct: 1   RLTASTGSRQRSRLSIMAQYLCNVQNCFTIPGRAFLPKPEVDVGVIHFTPLVEPQISQPF 60

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDF 269
           + ++K+ Q  F  RRK   + +  L          + +L  A ++  LR   LSI  F
Sbjct: 61  KLVEKVVQNVFQFRRKYCYKGVGNLFPNTQRLERTKEMLMVADVDPTLRPGQLSILQF 118


>gi|307092060|gb|ADN28365.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++IA ++       ++EIG G G LT  L+  GA  V+ IE+D++    L+ +  
Sbjct: 2   DQNQLQRIAAAAELKPEDNILEIGPGLGPLTAFLVESGA-NVLAIERDRRLCECLERVFP 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           Q   + +++ DDA   D+ K     +  +++ANLPY++ + +L   ++    PP
Sbjct: 61  QS-AKFKLLHDDA--PDYVKKNRDWAGWKLVANLPYSVASPILVE-LAGAAMPP 110


>gi|330835850|ref|YP_004410578.1| dimethyladenosine transferase [Metallosphaera cuprina Ar-4]
 gi|329567989|gb|AEB96094.1| dimethyladenosine transferase [Metallosphaera cuprina Ar-4]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 37/186 (19%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL+D ++++KI+++  +     +IEIG G GNL++++        + IE DQ+    
Sbjct: 4   SQNFLVDKDVIRKISDNIST--ERPLIEIGCGKGNLSEVV-----SPDLCIEIDQRLLSF 56

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI---RIIANLPYNIGTRLLFNWISADT 142
           LK+ +         IQ DA K+          P+   +II++LPY+I        I  + 
Sbjct: 57  LKNYNP--------IQGDARKL----------PVLRGQIISSLPYSITYDFFMEIIKING 98

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                  L L+ Q++   ++    + P +  +S +  +  +   +F I P  F P+P++ 
Sbjct: 99  ----ISRLLLILQEDFVNKVI---DYPTF--ISFILNYYFEINKLFVIPPSSFRPAPRIF 149

Query: 203 STVIHF 208
           S ++  
Sbjct: 150 SALVSL 155


>gi|224026271|ref|ZP_03644637.1| hypothetical protein BACCOPRO_03027 [Bacteroides coprophilus DSM
           18228]
 gi|224019507|gb|EEF77505.1| hypothetical protein BACCOPRO_03027 [Bacteroides coprophilus DSM
           18228]
          Length = 244

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 15/181 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK  F       +P +I  ++PYNI T ++   +       
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIV------- 115

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
           F  S T+ +   + E   A+        L++L       +++  I  + F P PKV S +
Sbjct: 116 FESSATISYL--IVEYGFAKGLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173

Query: 206 I 206
           I
Sbjct: 174 I 174


>gi|317480612|ref|ZP_07939700.1| ribosomal RNA adenine dimethylase [Bacteroides sp. 4_1_36]
 gi|316903238|gb|EFV25104.1| ribosomal RNA adenine dimethylase [Bacteroides sp. 4_1_36]
          Length = 244

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 15/181 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK  F       +P +I  ++PYNI T ++   +   +   
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFTFPS----HNPYKIFGSIPYNISTNIIRKIVFESS--- 119

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
              +++ L  +    ++    N      L++L       +++  I  + F P PKV S +
Sbjct: 120 --ATISYLIVEYGFAKMLLDTNRS----LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173

Query: 206 I 206
           I
Sbjct: 174 I 174


>gi|307091988|gb|ADN28329.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 7/107 (6%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++IA++        V+EIG G G LT++LL   A +VI IEKD +   +L++  +
Sbjct: 2   DQNQLRRIADAGVLAKTDRVLEIGPGLGPLTELLLE-RAGQVIAIEKDLRLVTVLRERFA 60

Query: 92  QHPNRLEIIQDDALKV--DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              N LE+   DAL V  D  + ++     +++ANLPY++ + +L  
Sbjct: 61  STGN-LELQHADALVVVKDHTRDWH---DWKLVANLPYSVASPILVE 103


>gi|307091908|gb|ADN28289.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 18/128 (14%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-- 88
           +D ++ ++IA + G+  G  V+++GAG G LT  L   GAR V+ +E D    PI  D  
Sbjct: 1   VDRSLARRIAATVGA--GEVVLDLGAGTGALTIPLARAGAR-VVAVEAD----PIWADRL 53

Query: 89  ----ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
               + +     +E++  D L+V        S P R+++N PY I T LL   +      
Sbjct: 54  SGRLVGAGLSGTVELVVGDILEVPLP-----SEPYRVVSNPPYGITTELLRRLLERPELG 108

Query: 145 PFWESLTL 152
           P+   L L
Sbjct: 109 PYRADLLL 116


>gi|307092010|gb|ADN28340.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 6/104 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++I +++G      V+EIG G G LT++LL   A +V+ IEKD +    L+    
Sbjct: 2   DQNQLRRIVDAAGLSANDKVLEIGPGLGPLTEILLE-KANEVLAIEKDTRLVEFLRG-HF 59

Query: 92  QHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134
           Q+P +L++   DAL  DF K      S  ++++NLPY++ + +L
Sbjct: 60  QNP-KLQLHHADAL--DFLKSEGHDWSDWKVVSNLPYSVASPIL 100


>gi|212694246|ref|ZP_03302374.1| hypothetical protein BACDOR_03772 [Bacteroides dorei DSM 17855]
 gi|212662747|gb|EEB23321.1| hypothetical protein BACDOR_03772 [Bacteroides dorei DSM 17855]
          Length = 218

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 15/156 (9%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           + EIGAG G+ T  L+      V  IE D +   + ++    +PN  +I+ DD LK  F 
Sbjct: 8   IFEIGAGKGHFTAELVK-RCNFVTAIEIDSKLCEVTRNKLLNYPN-YQIVNDDILKFTFP 65

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
                 +P +I  N+PYNI T ++   +       F  S T+ +   + E   A+     
Sbjct: 66  S----HNPYKIFGNIPYNISTNIIRKIV-------FESSATISYL--IVEYGFAKSLLDT 112

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
              L++L       +++  I  + F P PKV S +I
Sbjct: 113 NRSLALLLMAEVDISILAKIPRYYFHPKPKVDSALI 148


>gi|94995100|ref|YP_603198.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|282882751|ref|ZP_06291358.1| rRNA adenine N-6-methyltransferase [Peptoniphilus lacrimalis 315-B]
 gi|304439175|ref|ZP_07399093.1| rRNA adenine N-6-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|307067521|ref|YP_003876487.1| dimethyladenosine transferase [Streptococcus pneumoniae AP200]
 gi|313892158|ref|ZP_07825751.1| rRNA adenine N-6-methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|326802744|ref|YP_004320562.1| rRNA adenine N-6-methyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|2190972|gb|AAB60941.1| erythromycin resistance methylase [Streptococcus pyogenes]
 gi|94548608|gb|ABF38654.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|215263203|emb|CAQ56289.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes]
 gi|281297412|gb|EFA89901.1| rRNA adenine N-6-methyltransferase [Peptoniphilus lacrimalis 315-B]
 gi|304372307|gb|EFM25895.1| rRNA adenine N-6-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|306409058|gb|ADM84485.1| Dimethyladenosine transferase (rRNA methylation) [Streptococcus
           pneumoniae AP200]
 gi|313119296|gb|EFR42495.1| rRNA adenine N-6-methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|326650330|gb|AEA00513.1| rRNA adenine N-6-methyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I + +       +IEIG+G G+ T+ L+ +  R V  IE D+      
Sbjct: 10  QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K       N +++I +D LK  F K    ++  +I  N+PYNI T ++   I+ D+   +
Sbjct: 69  KKAVEPFQN-IKVIHEDILKFSFPK----NTDYKIFGNIPYNISTDIV-KKIAFDSQAKY 122

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
                L+ ++   +R+   + +     L +L        ++  +    F P P V S +I
Sbjct: 123 S---YLIVERGFAKRLQNTQRA-----LGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174


>gi|307091920|gb|ADN28295.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 122

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           IL +I E++      TV E+G G G +T  LL    R VI +E D+     L++      
Sbjct: 5   ILDRIVEAADLSPSSTVAEVGPGLGVVTTELLQRTGR-VIAVEIDENLCRHLEERFGDRE 63

Query: 95  NRLEIIQDDALKVDFEKFFNISS---PIRIIANLPYNIGTRLLFNWISADTWPP 145
           N L ++ +D LK+   +  +      P  ++ NLPY I   +L +++ +D  PP
Sbjct: 64  N-LNLVCNDILKISPREILDAGDAEQPYTLVGNLPYYITAPILRHFLESDCQPP 116


>gi|330938462|gb|EGH42069.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 90

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ V
Sbjct: 4   QYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLDV 62

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           +E D+   PIL    +  PN   + Q DA
Sbjct: 63  VELDKDLIPILNGQFASKPN-FNLHQGDA 90


>gi|307092046|gb|ADN28358.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++IA ++       ++EIG G G LT  L+  GA  V+ IE+D++    L+ +  
Sbjct: 2   DQNQLRRIAAAAELKPEDNILEIGPGLGPLTAFLVESGA-NVLAIERDRRLCECLERVFP 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           Q   + ++  DDAL  D+ K     +  +++ NLPY++ + +L   ++    PP
Sbjct: 61  QS-AKFKLPHDDAL--DYVKKNRDWAGWKLVVNLPYSVASPILVE-LAGTAMPP 110


>gi|67974731|gb|AAY84558.1| erythromycin resistance methylase [Helcococcus kunzii]
          Length = 176

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I + +       +IEIG+G G+ T+ L+ +  R V  IE D+      
Sbjct: 4   QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 62

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K       N +++I +D LK  F K    ++  +I  N+PYNI T ++   I+ D+   +
Sbjct: 63  KKAVEPFQN-IKVIHEDILKFSFPK----NTDYKIFGNIPYNISTDIV-KKIAFDSQAKY 116

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
                L+ ++   +R+   + +     L +L        ++  +    F P P V S +I
Sbjct: 117 S---YLIVERGFAKRLQNTQRA-----LGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 168


>gi|256784390|ref|ZP_05522821.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces
           lividans TK24]
 gi|289768269|ref|ZP_06527647.1| lincomycin resistance methylase [Streptomyces lividans TK24]
 gi|153346|gb|AAA26779.1| lincomycin resistance methylase [Streptomyces lividans]
 gi|289698468|gb|EFD65897.1| lincomycin resistance methylase [Streptomyces lividans TK24]
          Length = 260

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 21/190 (11%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           + + QNFL D    +++A  +    G    ++E+GAG G LT+ L    +R++   E D 
Sbjct: 9   RTLSQNFLADRATAERVARLAVPDRGRPPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +  P L+   ++ P+ + ++  D L     +     +P  +  N+P++  T  + +W   
Sbjct: 68  RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSR-TADIVDWCLT 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197
               P     TLL Q E      A+K +  YGR   L+VLT  R +  ++  +    F P
Sbjct: 121 A---PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172

Query: 198 SPKVTSTVIH 207
           +P+V + ++ 
Sbjct: 173 APRVDAGILR 182


>gi|221120384|ref|XP_002166686.1| PREDICTED: similar to Probable dimethyladenosine transferase [Hydra
           magnipapillata]
          Length = 298

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 98/249 (39%), Gaps = 52/249 (20%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K   GQ+ L +  I+  I + +      TV+E+G G GN++  +L   A+K+I  E D +
Sbjct: 24  KHEFGQHILKNPLIVNAIIDKAAIKSTDTVLEVGPGTGNMSVKILE-KAKKLIACELDPR 82

Query: 82  FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               ++      P  N+L +I  D LK +   +F+       +ANLPY I +  +F  + 
Sbjct: 83  MASEIQKRVQGSPEANKLHLIVGDVLKSELP-YFDCC-----VANLPYQISSPFVFKLL- 135

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                PF+             R    KN+                          F P P
Sbjct: 136 --LHRPFF-------------RFLVGKNN--------------------------FRPPP 154

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           KV S+V+   P   P P   +    + + AF ++ KTL          ++L +   + + 
Sbjct: 155 KVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAACFSSKAVIDMLEK-NYKIHC 213

Query: 260 RAENLSIED 268
              N+ +ED
Sbjct: 214 SINNIIVED 222


>gi|21224418|ref|NP_630197.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces
           coelicolor A3(2)]
 gi|13276816|emb|CAC33934.1| putative antibiotic resistance rRNA adenine methyltransferase
           [Streptomyces coelicolor A3(2)]
          Length = 260

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 21/189 (11%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           + + QNFL D    +++A  +    G    ++E+GAG G LT+ L    +R++   E D 
Sbjct: 9   RTLSQNFLADRATAERVAHLAVPDRGRRPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +  P L+   ++ P+ + ++  D L     +     +P  +  N+P++  T  + +W   
Sbjct: 68  RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSR-TADIVDWCLT 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197
               P     TLL Q E      A+K +  YGR   L+VLT  R +  ++  +    F P
Sbjct: 121 A---PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172

Query: 198 SPKVTSTVI 206
           +P+V + ++
Sbjct: 173 APRVDAGIL 181


>gi|58613499|gb|AAW79336.1| chloroplast dimethyladenosine synthase [Isochrysis galbana]
          Length = 176

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 13/123 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITV----IEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+ +GQNFL+D ++ + +    G+L+   V    +E G G G LT +LL     +++ +E
Sbjct: 48  KQSLGQNFLVDESMSRGMV---GALEACRVGDRLVEFGPGQGALTALLLE-AHPQMLAVE 103

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFN 136
            DQ+   +L++   +HP  L + + D L++D           +++I N P+ + +  LF 
Sbjct: 104 LDQRMEAVLRE---EHPQ-LALRRGDMLEIDLADLSAERGGSLQLITNTPFYLTSPFLFK 159

Query: 137 WIS 139
            + 
Sbjct: 160 LLG 162


>gi|73487011|gb|AAZ76625.1| Erm(39)ne [Mycobacterium neworleansense]
          Length = 246

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 24/143 (16%)

Query: 26  GQNFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           GQNF  D     +I+K +A ++G      +IEIGAG G LT  L  L  R +  IE D++
Sbjct: 12  GQNFXRDRRVVADIVKIVARTTGP-----IIEIGAGDGALTLPLQRLD-RPLTAIEIDRR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +S           + +  DF ++    +P  ++ NLP+++ T +L   +   
Sbjct: 66  RAGRLAARTSA----------EVVGTDFLRYRLPPTPHVVVGNLPFHLTTAILRRLLHG- 114

Query: 142 TWPPFWESLTLLFQKEVGERITA 164
              P W    LL Q EV  R  A
Sbjct: 115 ---PGWTDAVLLMQWEVARRRAA 134


>gi|159161780|gb|ABW95883.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 29/174 (16%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISADTWPPFWESLTLLFQKEVGERI 162
             F          +I+ N+PY++ T    +++F   ++D +    E     +++ +G   
Sbjct: 73  FQFPN----KQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGF---YKRTLGIHR 125

Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           T          L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 126 T----------LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|226292329|gb|EEH47749.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb18]
          Length = 310

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 13/146 (8%)

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I + L F  ++ +  P       L+FQ+E   R+ A+     Y RLSV      +   +
Sbjct: 62  DISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYNRLSVNAQMWARIDHI 118

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
             +  + F P P V S+V+  +P  NP P    +    + + AF ++ KT+R S   LG 
Sbjct: 119 MKVGKNNFKPPPAVESSVVRIVPK-NPRPQISYDEWDGLLRIAFVRKNKTIRSSF--LGT 175

Query: 247 ENLLHQAGIETNLRA----ENLSIED 268
            ++L    +E+N R      N+ +ED
Sbjct: 176 TSVLDM--LESNYRTWCAQNNIPVED 199


>gi|167947426|ref|ZP_02534500.1| HAD-superfamily hydrolase subfamily IA, variant 3 [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 86

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+     L D S      L I   DALK DF    +   P+R++ NLPYNI T LL
Sbjct: 10  VVELDRDLIGPLAD-SCATLGELTIHSADALKFDFTALASPERPLRVVGNLPYNISTPLL 68

Query: 135 FNWIS 139
           F+ +S
Sbjct: 69  FHLLS 73


>gi|225350652|gb|ACN88190.1| adenine-N6 methyltransferase [Streptococcus pyogenes]
 gi|225350654|gb|ACN88191.1| adenine-N6 methyltransferase [Streptococcus pyogenes]
          Length = 180

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 29/193 (15%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T    +++F   
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQIIKKVVFESR 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           ++D +    E                ++    +  L +L   +     +  +    F P 
Sbjct: 119 ASDIYLIVEEGF-------------YKRTLDIHRTLGLLLHTQVSIQQLLKLPAECFHPK 165

Query: 199 PKVTSTVIHFIPH 211
           PKV S +I    H
Sbjct: 166 PKVNSVLIKLTRH 178


>gi|257056840|ref|YP_003134672.1| dimethyladenosine transferase (rRNA methylation) [Saccharomonospora
           viridis DSM 43017]
 gi|256586712|gb|ACU97845.1| dimethyladenosine transferase (rRNA methylation) [Saccharomonospora
           viridis DSM 43017]
          Length = 269

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           G +FL+  ++L  +  +        V+++GAGPG +T  L    AR V+ +E+D +F   
Sbjct: 18  GVHFLVSKDVLDTLVRTCTPGPDDLVLDLGAGPGVVTAALARTHAR-VLAVERDPEFVRT 76

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           L     +H +R+ +IQ D   V   +   +     ++AN PY++ T
Sbjct: 77  LNS-RFRHNDRVRVIQADIRTVALPRRDFL-----VVANPPYSLST 116


>gi|227327729|ref|ZP_03831753.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 116

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 21/125 (16%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H       H+    +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ-----GHFA---RKRFGQNFLNDHFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF-NIS 116
                +G R  +  VIE D+     L+     HP   ++L IIQ DA+ +DF        
Sbjct: 53  ---APVGDRMDRFTVIELDRDLAARLE----THPTLKDKLTIIQQDAMTIDFAALAEQAG 105

Query: 117 SPIRI 121
            P+R+
Sbjct: 106 QPLRV 110


>gi|159161813|gb|ABW95899.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + ++ V  IE D   F    ++SS+     +R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKHVTSIELDSHLF----NLSSEKLKLNSRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PYN+ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGNIPYNLSTKI----IKKVVFESHASDIYLVVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|295673178|ref|XP_002797135.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb01]
 gi|226282507|gb|EEH38073.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb01]
          Length = 309

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 13/146 (8%)

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I + L F  ++ +  P       L+FQ+E   R+ A+     Y RLSV      +   +
Sbjct: 62  DISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYNRLSVNAQMWARIDHI 118

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
             +  + F P P V S+V+  +P  NP P    +    + + AF ++ KT+R S   LG 
Sbjct: 119 MKVGKNNFKPPPAVESSVVRIVPK-NPRPQISYDEWDGLLRIAFVRKNKTIRSSF--LGT 175

Query: 247 ENLLHQAGIETNLRA----ENLSIED 268
            ++L    +E+N R      N+ +ED
Sbjct: 176 TSVLDM--LESNYRTWCAQNNIPVED 199


>gi|72547154|ref|XP_843186.1| rRNA dimethyltransferase [Leishmania major strain Friedlin]
 gi|323363700|emb|CBZ12705.1| putative rRNA dimethyltransferase [Leishmania major strain
           Friedlin]
          Length = 464

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 17  YKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           YK+    ++    Q F+L+L     ++  ++ ++ +     ++E+G G G+LT+ LLT  
Sbjct: 39  YKVPHAGFLAKYDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGSLTRSLLTRP 98

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              V+ IE D++F P L+ I +   N+ + +  D LKVD  +    + P  + AN+
Sbjct: 99  CVGVLGIEVDERFNPHLEQIRNYTNNKFQWVTADVLKVDELELLKSAFPHFVKANI 154



 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 15/186 (8%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP-----PFWESLTLLF-QKE 157
           A  V   ++ N ++ + +IANLP+ I T LL  + +AD         F      +F Q+E
Sbjct: 245 AFDVTNHRWSNGNAKVEVIANLPFEIITELLMRY-AADCSQHRGLFAFGRVPIHVFTQRE 303

Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC 217
           V ERI A   S  + RLSVL        +        ++P  +V   ++   P   P+  
Sbjct: 304 VAERILAPAGSVQFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAH 363

Query: 218 CL--ESLKKITQEAF--GKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENLSIEDF 269
            L   SL   T      G R  T+ +SL R     L    L +  ++  +   +LS+ + 
Sbjct: 364 GLSASSLIHFTNLLMKPGLRAATVHKSLSRFAPAELVQYMLQELRMDGAMTVLDLSVVEV 423

Query: 270 CRITNI 275
            R+  +
Sbjct: 424 TRLACL 429


>gi|117558557|gb|AAI27364.1| tfb2m protein [Xenopus (Silurana) tropicalis]
          Length = 323

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +G  ++E   GPG LTQ LL  GAR V+ +E ++ F P L+ + +    +LE++  D  K
Sbjct: 109 NGPIILECDPGPGILTQTLLAAGAR-VVALESNKDFLPSLQLLENNMDGQLEVVHCDFFK 167

Query: 107 VD 108
           +D
Sbjct: 168 LD 169


>gi|9507389|ref|NP_040475.1| 23S RNA methylase [Plasmid pT48]
 gi|253730996|ref|ZP_04865161.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253735006|ref|ZP_04869171.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|127195|sp|P13978|ERMC3_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|455358|gb|AAA20192.1| 23S RNA methylase [Plasmid pT48]
 gi|253725266|gb|EES93995.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253727019|gb|EES95748.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH130]
          Length = 244

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 24/251 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I     LN     +    K     F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226

Query: 264 LSIEDFCRITN 274
           +S E F  + N
Sbjct: 227 ISFEQFLSLFN 237


>gi|301603803|ref|XP_002931532.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Xenopus
           (Silurana) tropicalis]
          Length = 414

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +G  ++E   GPG LTQ LL  GAR V+ +E ++ F P L+ + +    +LE++  D  K
Sbjct: 109 NGPIILECDPGPGILTQTLLAAGAR-VVALESNKDFLPSLQLLENNMDGQLEVVHCDFFK 167

Query: 107 VD 108
           +D
Sbjct: 168 LD 169


>gi|307092018|gb|ADN28344.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 115

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I ++ G L   TV+EIG G G LT  LL   A+ VI +E D          +S   N 
Sbjct: 7   RAIVDALGDLSQATVLEIGPGRGVLTG-LLAARAKHVIAVELDAAL------AASLQGNS 59

Query: 97  LEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134
           +E++  D LKVD         + + +I NLPY I + +L
Sbjct: 60  VEVLCQDILKVDLTGLAVQHGTRLFVIGNLPYYISSPIL 98


>gi|32455918|ref|NP_862543.1| methylase ermT [Plasmid p121BS]
 gi|11527994|gb|AAG37071.1|AF310974_2 methylase ermT [Plasmid p121BS]
          Length = 244

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 22/250 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + +I  +        +IEIG+G G+ T + L      V  IE D +   I
Sbjct: 9   SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFT-LELAKRCNYVTAIEIDPKLCRI 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            K+   ++ N  ++I  D L+  F K    +   +I  N+PYNI T ++   +   T   
Sbjct: 68  TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +    L+ +    +R+     S     L++        +++  I    F P P+V S++
Sbjct: 123 SY----LIVEYGFAKRLLNTNRS-----LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA-ENL 264
           I    H  P    L+  K+          K + +  ++L  +N  +QA     +    N+
Sbjct: 174 IVLKRH--PSKISLKDRKQYENFVM----KWVNKEYRKLFSKNQFYQALKYARIDDLNNI 227

Query: 265 SIEDFCRITN 274
           S E F  + N
Sbjct: 228 SFEQFLSLFN 237


>gi|307092020|gb|ADN28345.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L++I+E S       V+EIG G G +T+  L  G   V  IE D+    +L+   S   N
Sbjct: 14  LEEISEVS------QVVEIGPGMGAITEFFLA-GGTAVTAIEVDKGLAEVLRARFSGD-N 65

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +  +++ D LKV+            ++ NLPY I T L+  W+     P
Sbjct: 66  KFHLVEGDVLKVEMSPLIMARV---VVGNLPYYISTPLIARWMECPQPP 111


>gi|228994|prf||1815179A rRNA methyltransferase
          Length = 260

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 21/190 (11%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           + + QNF+ D    +++A  +    G    ++E+GAG G LT+ L    +R++   E D 
Sbjct: 9   RTLSQNFIADRATAERVARLAVPDRGRPPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +  P L+   ++ P+ + ++  D L     +     +P  +  N+P++  T  + +W   
Sbjct: 68  RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSR-TADIVDWCLT 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197
               P     TLL Q E      A+K +  YGR   L+VLT  R +  ++  +    F P
Sbjct: 121 A---PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172

Query: 198 SPKVTSTVIH 207
           +P+V + ++ 
Sbjct: 173 APRVDAGILR 182


>gi|269124773|ref|YP_003298143.1| rRNA (adenine-N(6)-)-methyltransferase [Thermomonospora curvata DSM
           43183]
 gi|268309731|gb|ACY96105.1| rRNA (adenine-N(6)-)-methyltransferase [Thermomonospora curvata DSM
           43183]
          Length = 313

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 92/229 (40%), Gaps = 25/229 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           ++ + QNFL D   + +     +     G  V+E+GAG G +T+ L    A  VI  E D
Sbjct: 19  RRSLSQNFLADPAAIGRYVRVVTRDLPGGALVVEVGAGDGRITRALAAH-AGAVIAYEID 77

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               P+L      H     +     +  DF      + P  +  ++PY   +R++ +W  
Sbjct: 78  ----PVLA--GRLHAACRPLGNVRCVPGDFLSARPPARPFHLTGSIPYAATSRIM-DWAL 130

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT----GWRTKATMMFDISPHVF 195
           A        S TL+ Q E   + T       + RL+VLT     WR    +   I    F
Sbjct: 131 AAP---SLASATLITQLEYALKRTGGYR--RWSRLTVLTWPVFTWR----LAGRIDRRAF 181

Query: 196 FPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLK 242
            P P+V S ++       P+  P      ++  +  FG R  TL  SL+
Sbjct: 182 RPVPRVDSAILRIERRERPLLPPGLPAGYRRCVEIGFGGRGGTLHASLR 230


>gi|113196900|gb|ABI31750.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
          Length = 219

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 21/194 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  I  D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIALDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ ++PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 STVIHFIPHLNPIP 216
           S +I    H   +P
Sbjct: 170 SVLIKLTRHTTDVP 183


>gi|72528309|gb|AAZ73008.1| ribosomal methylase Erm34 [Bacillus clausii]
          Length = 240

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 34/193 (17%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KDISS 91
            +LK+I + +      TV+E+GAG G LT  +L+  A +V+ +E DQ+    L  K + S
Sbjct: 2   RLLKEIVDKADVSVRDTVLELGAGKGALTT-ILSERADRVLAVEYDQKCIEALQWKLVGS 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT---RLLFNWISADTWPPFWE 148
           ++   + ++  D +KV        + P  +++N+PY I T   ++L N           +
Sbjct: 61  KN---VSVLHQDIMKVALP-----TEPFVVVSNIPYAITTAIMKMLLNNPKNKL-----Q 107

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD------ISPHVFFPSPKVT 202
              ++ +K   +R T+      Y     +  W     M FD      IS   F P PKV 
Sbjct: 108 RGAIVMEKGAAKRFTSVSPKDAY-----VMAWH----MWFDIHYERGISRSSFSPPPKVD 158

Query: 203 STVIHFIPHLNPI 215
           S ++  +   +P+
Sbjct: 159 SALVRIVRKQHPL 171


>gi|183220525|ref|YP_001838521.1| putative dimethyladenosine transferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778947|gb|ABZ97245.1| Putative dimethyladenosine transferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 256

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 16/174 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRL 97
           +A+   S   +T+ EIG G G LT  +L L  ++  + E D  +  + KD I  + P+ +
Sbjct: 7   VAKPLFSEGDVTLAEIGIGLGTLTYPILCL-EKETDLFEIDHAYIQLAKDEILPKFPHAI 65

Query: 98  EIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
            +   DAL    E  F+I    + +  NLPY++ T ++   I        ++    + QK
Sbjct: 66  -LHAGDAL----ENLFHIYPKKVFVFGNLPYHLTTEIINTLIINCR---HFQGGIFMVQK 117

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
           E  ER+  + +S     LSV      +   +  +  + FFP PK+ S ++   P
Sbjct: 118 EFAERLVKETSS-----LSVFLSAFCEIKFLKTVHKNCFFPIPKIHSALLLLTP 166


>gi|307092066|gb|ADN28368.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L +I  ++G     +++EIG G G LT +L+   A KV+ IEKD +    L +   
Sbjct: 2   DQNPLLRIVAAAGLSKSDSILEIGPGLGPLTDLLIA-NAAKVMAIEKDARLLAFLGEKYQ 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           Q    L+++  DAL+   +      S  ++++NLPY++ + +L  
Sbjct: 61  Q--TSLDLVYADALEF-LQTEQRDWSDWKVVSNLPYSVASPILVE 102


>gi|307565863|ref|ZP_07628323.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307345401|gb|EFN90778.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 477

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           S  G T++E  AG GN+   L   GA +VI  EKD+    +L D       + +II DD 
Sbjct: 26  SFVGKTILEPSAGKGNIVDWLKANGAGRVIACEKDENLKKLLTD-------KCDIIADDF 78

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTR 132
           L V  E+   IS    I+ N P++ G +
Sbjct: 79  LSVSSEQ---ISHVDYIVMNPPFSEGAK 103


>gi|300912862|ref|ZP_07130301.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|300885836|gb|EFK81042.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 182

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 15/181 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 I 206
           I
Sbjct: 174 I 174


>gi|307092042|gb|ADN28356.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L +I  ++G     +++EIG G G LT +L+   A KV+ IEKD +    L +   
Sbjct: 2   DQNQLLRIVAAAGLSKSDSILEIGPGLGPLTDLLIA-NAAKVMAIEKDARLLAFLGEKYQ 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           Q    L+++  DAL+   +      S  ++++NLPY++ + +L  
Sbjct: 61  Q--TSLDLVYADALEF-LQTEQRDWSDWKVVSNLPYSVASPILVE 102


>gi|307092034|gb|ADN28352.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307092056|gb|ADN28363.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 115

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I ++ G L   TV+EIG G G LT  LL   A+ VI +E D      L+       N 
Sbjct: 7   RAIVDALGDLSQATVLEIGPGRGVLTG-LLAARAKHVIAVELDAALAVSLQG------NS 59

Query: 97  LEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134
           +E++  D LKVD         + + +I NLPY I + +L
Sbjct: 60  VEVLCQDILKVDLTGLAVQHGTRLLVIGNLPYYISSPIL 98


>gi|73960781|ref|XP_537224.2| PREDICTED: similar to transcription factor B2, mitochondrial
           isoform 1 [Canis familiaris]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 30/171 (17%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I E+        ++E   GPG LT+ LL   A KVI +E ++ F P L+ +  +   
Sbjct: 84  LAHILENERKTPDKLLLECNPGPGILTEALLKSKA-KVIALESNRNFLPHLQSLRKKVDG 142

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRI---------IANLPYNIGT--------------- 131
            LE+I  D  K+D   F  +  PI I         IA +P++  T               
Sbjct: 143 ELEVIYCDFFKMDPRNFGIVKPPIMISETLFQHLGIAAVPWSEDTPLRVVGIFPAKNEKK 202

Query: 132 ---RLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPH-YGRLSVL 177
              +LL++  S+ +   +    L +   +   E++ A   +PH Y  LSVL
Sbjct: 203 ILWKLLYDLYSSTSVYSYGRVQLNMFITEREYEKLVASPETPHLYQVLSVL 253


>gi|68535048|ref|YP_254597.1| hypothetical protein pSHaeB01 [Staphylococcus haemolyticus
           JCSC1435]
 gi|68448409|dbj|BAE05991.1| ermC [Staphylococcus haemolyticus JCSC1435]
          Length = 244

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGDFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I     LN     +    K     F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226

Query: 264 LSIEDFCRITN 274
           +S E F  + N
Sbjct: 227 ISFEQFLSLFN 237


>gi|28373207|ref|NP_783844.1| erythromycin resistance protein [Lactobacillus fermentum]
 gi|28273050|emb|CAD32685.1| erythromycin resistance protein [Lactobacillus fermentum]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 15/191 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + +I  +        +IEIG+G G+ T   L      V  IE D +   I
Sbjct: 8   SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFT-FELAKRCNYVTAIEIDPKLCRI 66

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            K+   ++ N  ++I  D L+  F K    +   +I  ++PYNI T ++   +   T   
Sbjct: 67  TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIFGSIPYNISTDIIRKIVFESTATE 121

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +    L+ +    +R+     S     L++        +++  I    F P PKV S +
Sbjct: 122 SY----LIVEYGFAKRLLNTNRS-----LALFLMTEVDISILSKIPREYFHPKPKVNSVL 172

Query: 206 IHFIPHLNPIP 216
           I    H   +P
Sbjct: 173 IKLTRHTTDVP 183


>gi|256965588|ref|ZP_05569759.1| N-methyltransferase [Enterococcus faecalis HIP11704]
 gi|256956084|gb|EEU72716.1| N-methyltransferase [Enterococcus faecalis HIP11704]
          Length = 171

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 35/188 (18%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWI 138
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T    +++F   
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQIIKKVVFESR 118

Query: 139 SADTWPPFWESL---TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           ++D +    E     TL   + +G                +L   +     +  +    F
Sbjct: 119 ASDIYLIVEEGFYKRTLDIHRTLG----------------LLLHTQVSIKQLLKLPAECF 162

Query: 196 FPSPKVTS 203
            P PKV S
Sbjct: 163 HPKPKVNS 170


>gi|213620904|ref|ZP_03373687.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 53

 Score = 45.4 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           RRKT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N
Sbjct: 1   RRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSEN 47


>gi|307091872|gb|ADN28271.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 14/123 (11%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +DLN++  I  ++       V+E+G G G+LT  L+   A +++ IE D  F P+ + + 
Sbjct: 1   IDLNLIDLIGTTAELTSADAVLEVGTGTGSLTARLVK-EAGQIVSIEIDTAFAPVARQVV 59

Query: 91  SQHPNRLEIIQDDALKVDFE------KFFNISS------PIRIIANLPYNIGTRLLFNWI 138
            +  N ++ +Q D L    E      K ++ ++        +++ANLPY I   L+ N +
Sbjct: 60  GEREN-VKYLQGDCLAKKSELNPAMLKAWDAAARKPGITTRKLVANLPYVIAMPLISNLL 118

Query: 139 SAD 141
            +D
Sbjct: 119 CSD 121


>gi|157058876|gb|ABV03165.1| ErmC [Cloning vector pJL-ES]
 gi|157058879|gb|ABV03167.1| ErmC [Cloning vector pJL-proES]
          Length = 244

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I     LN     +    K     F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKKYKKIFTKNQFNNSLKHAGIDD---LNN 226

Query: 264 LSIEDFCRITN 274
           +S E F  + N
Sbjct: 227 ISFEQFLSLFN 237


>gi|159161826|gb|ABW95905.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 27/207 (13%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+     +R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNSRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHVSDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
            +     L +L   +     +  +    F P PKV S +I    H   +P     L    
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253
              + KR        ++L  +N  HQA
Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200


>gi|70944826|ref|XP_742302.1| dimethyladenosine transferase [Plasmodium chabaudi chabaudi]
 gi|56521203|emb|CAH74779.1| dimethyladenosine transferase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           DG  +IE+G G G L++ L     + +  IE D +   I   IS   P   + I DD L+
Sbjct: 45  DGKGIIELGCGLGQLSKYLFK-KYKNMTAIEIDSRALAI---ISRTMPG-FDFIHDDVLQ 99

Query: 107 VDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +++++   N ++ + +I NLP+ I +++LF  +    +  + E   +  Q EV
Sbjct: 100 INYKELSINKNTKLSVIGNLPFYITSQILFCLLD---FYKYIEQAVVTIQYEV 149


>gi|256964193|ref|ZP_05568364.1| rRNA methylase [Enterococcus faecalis HIP11704]
 gi|256954689|gb|EEU71321.1| rRNA methylase [Enterococcus faecalis HIP11704]
          Length = 171

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 21/181 (11%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             ++SS+      R+ +I  D L+  F          +I+ N+PY++ T++    I    
Sbjct: 65  --NLSSEKLKLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVV 114

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      + L+ ++   +R      +     L +L   +     +  +    F P PKV 
Sbjct: 115 FESHASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVN 169

Query: 203 S 203
           S
Sbjct: 170 S 170


>gi|195054200|ref|XP_001994014.1| GH22567 [Drosophila grimshawi]
 gi|193895884|gb|EDV94750.1| GH22567 [Drosophila grimshawi]
          Length = 473

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           TV+EI  GPG+ T+ LL   +  R++I+IE+ + F P L+++ + +P+R+++ Q D + +
Sbjct: 86  TVLEINPGPGHFTRHLLDRESQFRRLILIEQMEHFMPRLQELHALYPDRVKVRQGDFIGI 145


>gi|9507309|ref|NP_040407.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid
           pIM13]
 gi|15676003|ref|NP_273130.1| rRNA adenine N-6-methyltransferase [Neisseria meningitidis MC58]
 gi|60677343|ref|YP_209657.1| rRNA methylase [Staphylococcus lentus]
 gi|188039007|ref|YP_001901404.1| ErmC [Staphylococcus aureus]
 gi|188039010|ref|YP_001901402.1| ErmC [Staphylococcus aureus]
 gi|253316335|ref|ZP_04839548.1| ErmC [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|258420075|ref|ZP_05683031.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus A9719]
 gi|258445548|ref|ZP_05693733.1| MlsR [Staphylococcus aureus A6300]
 gi|282929333|ref|ZP_06336901.1| rRNA (adenine-N6-)-methyltransferase [Staphylococcus aureus A9765]
 gi|127198|sp|P13956|ERM_BACSU RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|11256781|pir||A81241 rRNA adenine N-6-methyltransferase NMB0066 [imported] - Neisseria
           meningitidis (strain MC58 serogroup B)
 gi|4699789|pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
 gi|4699790|pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
 gi|7546361|pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 gi|7546362|pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 gi|7546363|pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 gi|7546364|pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 gi|149052|gb|AAA98136.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid
           pIM13]
 gi|7225287|gb|AAF40534.1| rRNA adenine N-6-methyltransferase; foreign cassette inserted to
           disrupt SiaD (NMB0067) to reduce virulence [Neisseria
           meningitidis MC58]
 gi|14324127|gb|AAK58461.1| ErmC [Cloning vector pIDN4]
 gi|28412258|gb|AAO39978.1| MlsR [Shuttle vector pSOS96]
 gi|28412265|gb|AAO39984.1| MlsR [Shuttle vector pSOS94]
 gi|28412272|gb|AAO39990.1| MlsR [Shuttle vector pSOS95]
 gi|33520710|gb|AAQ21191.1| MlsR [Reporter vector pGUSA]
 gi|60416749|emb|CAI59792.1| rRNA methylase [Staphylococcus lentus]
 gi|164416076|gb|ABY53434.1| ErmC [Staphylococcus aureus]
 gi|164416079|gb|ABY53436.1| ErmC [Staphylococcus aureus]
 gi|257843938|gb|EEV68331.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus A9719]
 gi|257855644|gb|EEV78574.1| MlsR [Staphylococcus aureus A6300]
 gi|270055323|gb|ACZ58816.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein)
           [Staphylococcus aureus]
 gi|270300163|gb|ACZ68969.1| rRNA adenine N-6-methyltransferase,
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein)
           [Staphylococcus aureus]
 gi|282591833|gb|EFB96884.1| rRNA (adenine-N6-)-methyltransferase [Staphylococcus aureus A9765]
 gi|291032710|gb|ADD71856.1| dimethyladenosine transferase [Staphylococcus aureus]
 gi|304389165|gb|ADM29196.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
          Length = 244

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I     LN     +    K     F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226

Query: 264 LSIEDFCRITN 274
           +S E F  + N
Sbjct: 227 ISFEQFLSLFN 237


>gi|220897976|gb|ACL81266.1| erythromycin resistance protein [Lactobacillus reuteri]
          Length = 244

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 15/181 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T +    I    +  
Sbjct: 68  TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKVVFES 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++L       +++  +    F P PKV S +
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSAL 173

Query: 206 I 206
           I
Sbjct: 174 I 174


>gi|282165916|gb|ADA79936.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein)
           [Staphylococcus aureus]
          Length = 244

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 23/185 (12%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVKRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T    +++F+ I+ +
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIVFDSIANE 122

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +        L+ +    +R+   K S     L++L       +++  +    F P PKV
Sbjct: 123 IY--------LIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169

Query: 202 TSTVI 206
            S++I
Sbjct: 170 NSSLI 174


>gi|293367853|ref|ZP_06614498.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318022|gb|EFE58423.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 244

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 23/185 (12%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T    +++F  I+ +
Sbjct: 68  TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKVVFESIADE 122

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           ++        L+ +    +R+   K S     L++L       +++  +    F P PKV
Sbjct: 123 SY--------LIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169

Query: 202 TSTVI 206
            S++I
Sbjct: 170 NSSLI 174


>gi|2326851|emb|CAA70207.1| adenine methylase [Staphylococcus haemolyticus]
          Length = 244

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVKRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I     LN     +    K     F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226

Query: 264 LSIEDFCRITN 274
           +S E F  + N
Sbjct: 227 ISFEQFLSLFN 237


>gi|34147928|gb|AAQ62542.1| erythromycin resistance methylase [Streptococcus sp. 'group G']
          Length = 184

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I + +       +IEIG+G G+ T+ L+ +  R V  IE D+      
Sbjct: 10  QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K       N +++I +D LK  F K    ++  +I  ++PYNI T ++   I+ D+   +
Sbjct: 69  KKAVEPFQN-IKVIHEDILKFSFPK----NTDYKIFGSIPYNISTDIV-KKIAFDSQAKY 122

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
                L+ ++   +R+   + +     L +L        ++  +    F P P V S +I
Sbjct: 123 S---YLIVERGFAKRLQNTQRA-----LGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174


>gi|159161788|gb|ABW95887.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSERL 57

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + 
Sbjct: 58  KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164

Query: 212 LNPIP 216
              +P
Sbjct: 165 TTDVP 169


>gi|159161822|gb|ABW95903.1| ErmB [uncultured bacterium]
 gi|159161828|gb|ABW95906.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 27/207 (13%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PYN+ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYNLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
            +     L +L   +     +  +    F P PKV S +I    H   +P     L    
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253
              + KR        ++L  +N  HQA
Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200


>gi|49489776|ref|YP_025321.1| hypothetical protein pE194p5 [Staphylococcus aureus]
 gi|127193|sp|P02979|ERMC1_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|16902901|gb|AAL30371.1|AF424805_2 adenine methylase [Transposon mutagenesis vector pRL692]
 gi|46558|emb|CAA24591.1| unnamed protein product [Staphylococcus aureus]
 gi|209127|gb|AAA72303.1| erythromycin resistance determinant [unidentified cloning vector]
 gi|1185576|gb|AAB40308.1| erythromycin resistance; erythromycin resistance determinant
           [Cloning vector pDG1728]
 gi|1185582|gb|AAB40313.1| erythromycin resistance; erythromycin resistance determinant
           [Cloning vector pDG1730]
 gi|1185608|gb|AAB40336.1| erythromycin resistance; erythromycin resistance determinant
           [Cloning vector pDG1729]
 gi|1185616|gb|AAB40343.1| erythromicin resistance; erythromycin resistance determinant
           [Cloning vector pDG1731]
 gi|1638844|emb|CAA57985.1| adenine methylase [Staphylococcus equorum subsp. equorum]
 gi|5327232|emb|CAB46341.1| adenine methylase [Staphylococcus aureus]
 gi|11545512|gb|AAG37883.1| erythromycin resistance [Tn10 delivery vector pHV1248]
 gi|11545518|gb|AAG37888.1| erythromycin resistance [Tn10 delivery vector pHV1249]
 gi|37496520|emb|CAD50595.1| adenine methylase [Cloning vector pUvBBAC]
 gi|50345956|gb|AAT74896.1| erythromycin-resistance protein [Anabaena transfer vector pRL2665b]
 gi|50949217|emb|CAF31657.1| rRNA adenine N-6-methyltransferase [Cloning vector pGID052]
 gi|83659404|gb|ABC40606.1| adenine methylase [Cloning vector pHP13]
 gi|156523812|gb|ABU68999.1| Erm [Cloning vector pHB518]
          Length = 244

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 23/185 (12%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVKRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T    +++F+ I+ +
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIYGNIPYNISTDIIRKIVFDSIANE 122

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +        L+ +    +R+   K S     L++L       +++  +    F P PKV
Sbjct: 123 IY--------LIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169

Query: 202 TSTVI 206
            S++I
Sbjct: 170 NSSLI 174


>gi|159161731|gb|ABW95859.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 27/207 (13%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PYN+ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYNLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
            +     L +L   +     +  +    F P PKV S +I    H   +P     L    
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253
              + KR        ++L  +N  HQA
Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200


>gi|332236391|ref|XP_003267387.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Nomascus
           leucogenys]
          Length = 396

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++E   GPG LTQ LL  GA KV+ +E D+ F P L+ +      +L +I  D  K+D  
Sbjct: 99  LLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLESLGRNLDGKLRVIHCDFFKIDPR 157

Query: 111 KFFNISSPIRIIANLPYNIG 130
               I  P      L  N+G
Sbjct: 158 SGGLIKPPAMSSRGLFKNLG 177


>gi|159161816|gb|ABW95900.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 27/207 (13%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PYN+ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYNLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
            +     L +L   +     +  +    F P PKV S +I    H   +P     L    
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253
              + KR        ++L  +N  HQA
Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200


>gi|159161762|gb|ABW95874.1| ErmB [uncultured bacterium]
 gi|159161790|gb|ABW95888.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + 
Sbjct: 58  KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164

Query: 212 LNPIP 216
              +P
Sbjct: 165 TTDVP 169


>gi|93213580|gb|ABF02183.1| erythromycin-resistance protein [Streptococcus pyogenes]
          Length = 198

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 11  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 66  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162


>gi|26224788|gb|AAN76364.1| putative adenine rRNA methylase [Mycobacterium microti]
          Length = 146

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V +IGAG G LT  L+  GAR V+ +E   +   +L++   + P  + ++  DA  +
Sbjct: 3   GELVFDIGAGEGALTAHLVRAGAR-VVAVELHPRRVGVLRE---RFPG-ITVVHADAASI 57

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
                     P R++AN PY I +RLL   ++ ++
Sbjct: 58  RLP-----GRPFRVVANPPYGISSRLLRTVVAPNS 87


>gi|254232160|ref|ZP_04925487.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C]
 gi|124601219|gb|EAY60229.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C]
          Length = 150

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 25/159 (15%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V +IGAG G LT  L+  GAR V+ +E   +   +L++   + P  + ++  DA  +
Sbjct: 4   GELVFDIGAGEGALTAHLVRAGAR-VVAVELHPRRVGVLRE---RFPG-ITVVHADAASI 58

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
                     P R++AN PY I +RLL   ++ ++      +  L+ Q+ +  +  A +N
Sbjct: 59  RLP-----GRPFRVVANPPYGISSRLLRTLLAPNSG---LVAADLVLQRALVCKF-ASRN 109

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
           +            R   T+   +    F P P V S V+
Sbjct: 110 A-----------RRFTLTVGLMLPRRAFLPPPHVDSAVL 137


>gi|71558999|ref|YP_271816.1| ErmC [Staphylococcus aureus]
 gi|68270937|gb|AAY88963.1| ErmC [Staphylococcus aureus]
          Length = 244

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I     LN     +    K     F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVDKEYKKIFTKNQFNNSLKHAGIDD---LNN 226

Query: 264 LSIEDFCRITN 274
           +S E F  + N
Sbjct: 227 ISFEQFLSLFN 237


>gi|159161759|gb|ABW95873.1| ErmB [uncultured bacterium]
 gi|159161776|gb|ABW95881.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|159161782|gb|ABW95884.1| ErmB [uncultured bacterium]
 gi|159161784|gb|ABW95885.1| ErmB [uncultured bacterium]
 gi|159161805|gb|ABW95895.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + 
Sbjct: 58  KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164

Query: 212 LNPIP 216
              +P
Sbjct: 165 TTDVP 169


>gi|11641289|ref|NP_071761.1| dimethyladenosine transferase 2, mitochondrial [Homo sapiens]
 gi|74752681|sp|Q9H5Q4|TFB2M_HUMAN RecName: Full=Dimethyladenosine transferase 2, mitochondrial;
           AltName: Full=Hepatitis C virus NS5A-transactivated
           protein 5; Short=HCV NS5A-transactivated protein 5;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 2;
           AltName: Full=Mitochondrial transcription factor B2;
           Short=h-mtTFB; Short=h-mtTFB2; Short=hTFB2M;
           Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 2; Flags:
           Precursor
 gi|10439783|dbj|BAB15566.1| unnamed protein product [Homo sapiens]
 gi|13097249|gb|AAH03383.1| Transcription factor B2, mitochondrial [Homo sapiens]
 gi|33328300|gb|AAQ09600.1| NS5ATP5 [Homo sapiens]
 gi|55959218|emb|CAI16399.1| transcription factor B2, mitochondrial [Homo sapiens]
 gi|119597558|gb|EAW77152.1| transcription factor B2, mitochondrial, isoform CRA_d [Homo
           sapiens]
 gi|167773225|gb|ABZ92047.1| transcription factor B2, mitochondrial [synthetic construct]
 gi|261858246|dbj|BAI45645.1| transcription factor B2, mitochondrial [synthetic construct]
          Length = 396

 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++E   GPG LTQ LL  GA KV+ +E D+ F P L+ +      +L +I  D  K+D  
Sbjct: 99  LLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLESLGKNLDGKLRVIHCDFFKLDPR 157

Query: 111 KFFNISSPIRIIANLPYNIG 130
               I  P      L  N+G
Sbjct: 158 SGGVIKPPAMSSRGLFKNLG 177


>gi|15609125|ref|NP_216504.1| methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|15841466|ref|NP_336503.1| rRNA adenine N-6-methyltransferase, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|31793167|ref|NP_855660.1| methyltransferase [Mycobacterium bovis AF2122/97]
 gi|148661799|ref|YP_001283322.1| putative rRNA adenine N-6-methyltransferase [Mycobacterium
           tuberculosis H37Ra]
 gi|148823202|ref|YP_001287956.1| methyltransferase [Mycobacterium tuberculosis F11]
 gi|167970487|ref|ZP_02552764.1| hypothetical methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|215404208|ref|ZP_03416389.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|215411680|ref|ZP_03420476.1| methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|215427345|ref|ZP_03425264.1| methyltransferase [Mycobacterium tuberculosis T92]
 gi|215430906|ref|ZP_03428825.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|215446198|ref|ZP_03432950.1| methyltransferase [Mycobacterium tuberculosis T85]
 gi|218753706|ref|ZP_03532502.1| methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|219557950|ref|ZP_03537026.1| methyltransferase [Mycobacterium tuberculosis T17]
 gi|224990365|ref|YP_002645052.1| methyltransferase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798962|ref|YP_003031963.1| methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|254364806|ref|ZP_04980852.1| hypothetical methyltransferase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551011|ref|ZP_05141458.1| methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186962|ref|ZP_05764436.1| methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|260201089|ref|ZP_05768580.1| methyltransferase [Mycobacterium tuberculosis T46]
 gi|260205267|ref|ZP_05772758.1| methyltransferase [Mycobacterium tuberculosis K85]
 gi|289443479|ref|ZP_06433223.1| methyltransferase [Mycobacterium tuberculosis T46]
 gi|289447606|ref|ZP_06437350.1| methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289554234|ref|ZP_06443444.1| methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289570086|ref|ZP_06450313.1| methyltransferase [Mycobacterium tuberculosis T17]
 gi|289574662|ref|ZP_06454889.1| methyltransferase [Mycobacterium tuberculosis K85]
 gi|289746067|ref|ZP_06505445.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289750568|ref|ZP_06509946.1| methyltransferase [Mycobacterium tuberculosis T92]
 gi|289754091|ref|ZP_06513469.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289758101|ref|ZP_06517479.1| methyltransferase [Mycobacterium tuberculosis T85]
 gi|289762144|ref|ZP_06521522.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294996920|ref|ZP_06802611.1| methyltransferase [Mycobacterium tuberculosis 210]
 gi|297634559|ref|ZP_06952339.1| methyltransferase [Mycobacterium tuberculosis KZN 4207]
 gi|297731547|ref|ZP_06960665.1| methyltransferase [Mycobacterium tuberculosis KZN R506]
 gi|298525486|ref|ZP_07012895.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776222|ref|ZP_07414559.1| methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|306780003|ref|ZP_07418340.1| methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|306784753|ref|ZP_07423075.1| methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|306789110|ref|ZP_07427432.1| methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|306793444|ref|ZP_07431746.1| methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|306797828|ref|ZP_07436130.1| methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|306803708|ref|ZP_07440376.1| methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|306808282|ref|ZP_07444950.1| methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|306968106|ref|ZP_07480767.1| methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|306972331|ref|ZP_07484992.1| methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|307080041|ref|ZP_07489211.1| methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|307084616|ref|ZP_07493729.1| methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|313658880|ref|ZP_07815760.1| methyltransferase [Mycobacterium tuberculosis KZN V2475]
 gi|1403467|emb|CAA98396.1| PROBABLE METHYLTRANSFERASE [Mycobacterium tuberculosis H37Rv]
 gi|13881706|gb|AAK46317.1| rRNA adenine N-6-methyltransferase, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|31618759|emb|CAD96863.1| PROBABLE METHYLTRANSFERASE [Mycobacterium bovis AF2122/97]
 gi|134150320|gb|EBA42365.1| hypothetical methyltransferase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505951|gb|ABQ73760.1| putative rRNA adenine N-6-methyltransferase [Mycobacterium
           tuberculosis H37Ra]
 gi|148721729|gb|ABR06354.1| hypothetical methyltransferase [Mycobacterium tuberculosis F11]
 gi|224773478|dbj|BAH26284.1| methyltransferase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320465|gb|ACT25068.1| methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|289416398|gb|EFD13638.1| methyltransferase [Mycobacterium tuberculosis T46]
 gi|289420564|gb|EFD17765.1| methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289438866|gb|EFD21359.1| methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289539093|gb|EFD43671.1| methyltransferase [Mycobacterium tuberculosis K85]
 gi|289543840|gb|EFD47488.1| methyltransferase [Mycobacterium tuberculosis T17]
 gi|289686595|gb|EFD54083.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289691155|gb|EFD58584.1| methyltransferase [Mycobacterium tuberculosis T92]
 gi|289694678|gb|EFD62107.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289709650|gb|EFD73666.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713665|gb|EFD77677.1| methyltransferase [Mycobacterium tuberculosis T85]
 gi|298495280|gb|EFI30574.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308215334|gb|EFO74733.1| methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308327107|gb|EFP15958.1| methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308330486|gb|EFP19337.1| methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308334320|gb|EFP23171.1| methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308338121|gb|EFP26972.1| methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308341814|gb|EFP30665.1| methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308345301|gb|EFP34152.1| methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308349603|gb|EFP38454.1| methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308354231|gb|EFP43082.1| methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308358209|gb|EFP47060.1| methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308362140|gb|EFP50991.1| methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308365794|gb|EFP54645.1| methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|323719477|gb|EGB28604.1| methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|326903599|gb|EGE50532.1| methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328458717|gb|AEB04140.1| methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 179

 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V +IGAG G LT  L+  GAR V+ +E   +   +L++   + P  + ++  DA  +
Sbjct: 33  GELVFDIGAGEGALTAHLVRAGAR-VVAVELHPRRVGVLRE---RFPG-ITVVHADAASI 87

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLL 134
                     P R++AN PY I +RLL
Sbjct: 88  RLP-----GRPFRVVANPPYGISSRLL 109


>gi|330948591|gb|EGH48851.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 74

 Score = 44.7 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           PN   + Q DALK DF         +R++ NLPYNI T L+F+ +   +       +  +
Sbjct: 2   PN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNAS---LIRDMHFM 57

Query: 154 FQKEVGERITA 164
            QKEV ER+ A
Sbjct: 58  LQKEVVERMAA 68


>gi|159161778|gb|ABW95882.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + 
Sbjct: 58  KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IRKVVFESHASDIY 109

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164

Query: 212 LNPIP 216
              +P
Sbjct: 165 TTDVP 169


>gi|90762292|gb|ABD97884.1| erythromycin resistant protein [Streptococcus pyogenes]
          Length = 198

 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 11  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 66  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162


>gi|55590166|ref|XP_514318.1| PREDICTED: transcription factor B2, mitochondrial isoform 2 [Pan
           troglodytes]
 gi|114573580|ref|XP_001139400.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial isoform 1
           [Pan troglodytes]
          Length = 393

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++E   GPG LTQ LL  GA KV+ +E D+ F P L+ +      +L +I  D  K+D  
Sbjct: 96  LLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLESLGKNLDGKLRVIHCDFFKLDPR 154

Query: 111 KFFNISSPIRIIANLPYNIG 130
               I  P      L  N+G
Sbjct: 155 SGGVIKPPAMSSRGLFKNLG 174


>gi|154281463|ref|XP_001541544.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411723|gb|EDN07111.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 142

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 9/105 (8%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + +      TV+EIG G GNLT  +L   A+KVI +E D +   
Sbjct: 38  IGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAA 96

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            +       P   RLE++  D +K D   +F++      I+N PY
Sbjct: 97  EVTKRVQGKPEQKRLEVLLGDVIKTDLP-YFDVC-----ISNTPY 135


>gi|93213584|gb|ABF02185.1| erythromycin-resistance protein [Streptococcus pyogenes]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|159161755|gb|ABW95871.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PYN+ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYNLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|159161722|gb|ABW95855.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57

Query: 95  N---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + 
Sbjct: 58  KLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKEVVFESHASDIY 109

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164

Query: 212 LNPIP 216
              +P
Sbjct: 165 TTDVP 169


>gi|159161798|gb|ABW95892.1| ErmB [uncultured bacterium]
 gi|159161811|gb|ABW95898.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57

Query: 95  N---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + 
Sbjct: 58  KLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164

Query: 212 LNPIP 216
              +P
Sbjct: 165 TTDVP 169


>gi|284033869|ref|YP_003383800.1| ribosomal RNA adenine methylase transferase [Kribbella flavida DSM
           17836]
 gi|283813162|gb|ADB35001.1| ribosomal RNA adenine methylase transferase [Kribbella flavida DSM
           17836]
          Length = 182

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           LD    +++ +++G   G  V+++GAG G LT  L+  GA  V+ +E        L+   
Sbjct: 16  LDSRWAQRVVDAAGVRPGDLVLDVGAGLGALTAPLVRAGA-DVVAVELHPHRADRLRRRF 74

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +  P R  +++ DA  +        + P R++++ PY I T LL   +S  +      S 
Sbjct: 75  ADAPVR--VVRADAADLRLP-----TRPFRVVSSPPYGISTELLKRLLSPRS---RLVSA 124

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
            L+ Q++V  R      +P   R S         ++   +    F P P V S V+  
Sbjct: 125 DLVLQRQVVNRWV-DGRAPGRARWSRY----YDTSIGIRLPRKAFTPPPHVDSAVLRI 177


>gi|159161824|gb|ABW95904.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57

Query: 95  N---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + 
Sbjct: 58  KLNIRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164

Query: 212 LNPIP 216
              +P
Sbjct: 165 TTDVP 169


>gi|127194|sp|P13957|ERMC2_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|8927568|gb|AAF82122.1|AF276982_3 erythromycin resistance [Integrative vector pNLE1]
 gi|153065|gb|AAA98228.1| ermC [Plasmid pE5]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P P+V S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPRVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I     LN     +    K     F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226

Query: 264 LSIEDFCRITN 274
           +S E F  + N
Sbjct: 227 ISFEQFLSLFN 237


>gi|154344495|ref|XP_001568189.1| rRNA dimethyltransferase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065526|emb|CAM43293.1| putative rRNA dimethyltransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 469

 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 7/116 (6%)

Query: 17  YKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           YK+    ++    Q F+L+L     ++  ++ ++ +     ++E+G G G LT+ LLT  
Sbjct: 40  YKVPHAGFLAKYDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGTLTRSLLTRP 99

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              V+ +E D++F P L+ I +    + + +  D LKVD  +    + P  + AN+
Sbjct: 100 CVGVLGVEVDERFNPHLEQIRNYTNQKFQWVTADVLKVDELELLRSAFPHFVKANM 155



 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 15/176 (8%)

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWP-----PFWESLTLLF-QKEVGERITAQKN 167
           N ++ + +IANLP+ I T LL  + + D         F      +F Q+EV ERI A   
Sbjct: 256 NGNAKVEVIANLPFAIITELLMRY-AVDCAQHRGLFAFGRVPVHIFAQREVAERILAPAG 314

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227
           S  + RLSVL        +        ++P  +V   ++   P   P+   L++   I  
Sbjct: 315 SVEFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAHDLDASTLIHF 374

Query: 228 EAF----GKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNI 275
                  G R  T+ +SL R     L    L +  ++  +   +LS+ +  R+ ++
Sbjct: 375 TNLLMKPGLRAATVHKSLSRFAPAELVQYMLQELRMDGAMTVLDLSVVEVTRLASL 430


>gi|164604803|gb|ABY61962.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 229

 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 1   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 55

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + 
Sbjct: 56  KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIY 107

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 108 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 162

Query: 212 LNPIP 216
              +P
Sbjct: 163 TTDVP 167


>gi|332158500|ref|YP_004423779.1| methyltransferase related protein [Pyrococcus sp. NA2]
 gi|331033963|gb|AEC51775.1| methyltransferase related protein [Pyrococcus sp. NA2]
          Length = 204

 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           +A S G ++G  + ++GAG G L+   L LGA+KV  +E D +   ILK+   +   + E
Sbjct: 41  LAYSLGDIEGKVIADLGAGTGVLSYGALLLGAKKVYAVEIDSEAVEILKENLKEFKGKFE 100

Query: 99  IIQDDA----LKVD 108
           +   D     +KVD
Sbjct: 101 VFLGDVSSFKVKVD 114


>gi|5668894|gb|AAD46055.1|AF076212_5 adenine methylase [Promoter screenings vector pMM223]
 gi|5668900|gb|AAD46060.1|AF076213_5 adenine methylase [Promoter screenings vector pMM225]
          Length = 244

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 23/185 (12%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVKRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141
            ++    H N  +++  D ++  F K    +   +I  N+PYNI T    +++F+ I+ +
Sbjct: 68  TENKLVDHDN-FQVLNKDIMQFKFPK----NQSYKIYGNIPYNISTDIIRKIVFDSIANE 122

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +        L+ +    +R+   K S     L++L       +++  +    F P PKV
Sbjct: 123 IY--------LIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169

Query: 202 TSTVI 206
            S++I
Sbjct: 170 NSSLI 174


>gi|89243240|gb|ABD64776.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|126693559|gb|ABO26569.1| ErmB [Streptococcus uberis]
          Length = 198

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 11  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 65

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 66  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162


>gi|159161809|gb|ABW95897.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PYN+ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYNLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|164604805|gb|ABY61963.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 229

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 1   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 55

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + 
Sbjct: 56  KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIY 107

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 108 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 162

Query: 212 LNPIP 216
              +P
Sbjct: 163 TTDVP 167


>gi|124365213|gb|ABN09638.1| ErmB [Streptococcus pyogenes]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|414445|gb|AAC43194.1| Homologous to Swiss-Prot Accession Number P06992, 16S rRNA
           methyltransferase [Mycoplasma genitalium]
          Length = 112

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 24/117 (20%)

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220
           R+ A+ NS  Y        +    T +F I  H F P PKV ST+I            LE
Sbjct: 1   RLLAKVNSSDYSAFGAFCQYYLTITTVFKIDRHAFKPKPKVDSTLI-----------LLE 49

Query: 221 SLKKIT---------QEAFGKRRKTLRQSLKRLGGE----NLLHQAGIETNLRAENL 264
             K ++         ++ F +RRK L  +LK         N++ +  ++T++RA+ L
Sbjct: 50  KNKSVSYDFKFGLFLKQCFNQRRKMLINNLKHFFAVDYLLNIIQKQNLKTSIRAQEL 106


>gi|224770|prf||1112181A gene ermE
          Length = 133

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL D   + +IAE++     + V+E G   G LT+ L    AR+V   E D +
Sbjct: 36  RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPVEGLLTRELADR-ARQVTSYEIDPR 94

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVD 108
               L++  S HPN +E++  D L  +
Sbjct: 95  LAKSLREKLSGHPN-IEVVNADFLTAE 120


>gi|93213582|gb|ABF02184.1| erythromycin-resistance protein [Streptococcus pyogenes]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|281347296|gb|EFB22880.1| hypothetical protein PANDA_013195 [Ailuropoda melanoleuca]
          Length = 396

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 30/156 (19%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-- 108
           ++E   GPG LTQ LL   A KVI +E ++ F P L+ +  +   +LE++  D  K+D  
Sbjct: 97  ILECNPGPGILTQALLESKA-KVIALESNRTFLPHLESLREKVNGKLEVVYCDFFKMDPR 155

Query: 109 ---------------FEKF------FNISSPIRIIANLPY----NIGTRLLFNWISADTW 143
                          F  F      ++  +P+R+I   P      I  +LL++  S+ + 
Sbjct: 156 NSGIAKPPIMISETLFHHFGIKAVPWSEDTPLRVIGIFPAKNEKKILWKLLYDIYSSTSV 215

Query: 144 PPFWE-SLTLLFQKEVGERITAQKNSPH-YGRLSVL 177
             +    L +   +   E++ A   +PH Y  LSVL
Sbjct: 216 YSYGRVELNMFVTEREYEKLVASPQNPHLYQALSVL 251


>gi|89242973|gb|ABD64742.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|89243237|gb|ABD64775.1| erythromycin resistance protein [Streptococcus pyogenes]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|301777091|ref|XP_002923964.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like
           [Ailuropoda melanoleuca]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 30/156 (19%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-- 108
           ++E   GPG LTQ LL   A KVI +E ++ F P L+ +  +   +LE++  D  K+D  
Sbjct: 97  ILECNPGPGILTQALLESKA-KVIALESNRTFLPHLESLREKVNGKLEVVYCDFFKMDPR 155

Query: 109 ---------------FEKF------FNISSPIRIIANLPY----NIGTRLLFNWISADTW 143
                          F  F      ++  +P+R+I   P      I  +LL++  S+ + 
Sbjct: 156 NSGIAKPPIMISETLFHHFGIKAVPWSEDTPLRVIGIFPAKNEKKILWKLLYDIYSSTSV 215

Query: 144 PPFWE-SLTLLFQKEVGERITAQKNSPH-YGRLSVL 177
             +    L +   +   E++ A   +PH Y  LSVL
Sbjct: 216 YSYGRVELNMFVTEREYEKLVASPQNPHLYQALSVL 251


>gi|159161820|gb|ABW95902.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + 
Sbjct: 58  KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIY 109

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164

Query: 212 LNPIP 216
              +P
Sbjct: 165 TTDVP 169


>gi|159161818|gb|ABW95901.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 27/207 (13%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTAKLAKI-SKQVTSIESDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
            +     L +L   +     +  +    F P PKV S +I    H   +P     L    
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253
              + KR        ++L  +N  HQA
Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200


>gi|9507371|ref|NP_040462.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid
           pNE131]
 gi|127201|sp|P06572|ERMM_STAEP RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|150831|gb|AAA98296.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid
           pNE131]
          Length = 244

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 99/251 (39%), Gaps = 24/251 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S      ++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----FALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I     LN     +    K     F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226

Query: 264 LSIEDFCRITN 274
           +S E F  + N
Sbjct: 227 ISFEQFLSLFN 237


>gi|93213586|gb|ABF02186.1| erythromycin-resistance protein [Streptococcus pyogenes]
 gi|126693553|gb|ABO26568.1| ErmB [Streptococcus agalactiae]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|34328034|ref|NP_899170.1| rRNA methylase [Staphylococcus sciuri]
 gi|21953224|emb|CAC86410.1| adenine methylase [Staphylococcus sciuri]
 gi|33352204|emb|CAE18145.1| rRNA methylase [Staphylococcus sciuri]
          Length = 243

 Score = 43.9 bits (102), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 30/254 (11%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKRNIDKIMTNISLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +    I  N+PYNI T +    +   T+  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYNIFGNIPYNISTDI----VKRITFES 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             +   L+ +K   +R+   + +     L +L        M+  + P  F P P V S +
Sbjct: 119 QAKYSYLIVEKGFAKRLQNLQRA-----LGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRA 261
           I    H  P+         I+++ + K R    K + +  + L  +N   QA    N+  
Sbjct: 174 IVLERH-QPL---------ISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTN 223

Query: 262 EN-LSIEDFCRITN 274
            N LS E F  I N
Sbjct: 224 INKLSKEQFLSIFN 237


>gi|34147930|gb|AAQ62543.1| erythromycin resistance methylase [Streptococcus sp. 'group G']
          Length = 219

 Score = 43.9 bits (102), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|126693577|gb|ABO26572.1| ErmB [Streptococcus agalactiae]
          Length = 191

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|159161786|gb|ABW95886.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAGCFHPKPKVNSVLIKLTRHTTDVP 169


>gi|126693566|gb|ABO26570.1| ErmB [Streptococcus uberis]
          Length = 191

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|126583369|gb|ABO21678.1| ErmB [Streptococcus uberis]
          Length = 191

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|307092052|gb|ADN28361.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 43.5 bits (101), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 5/106 (4%)

Query: 32  DLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           D N L++I  S+ +L G   V+EIG G G LT++LLT  A  V+ I+ D++    LK+  
Sbjct: 2   DGNQLRRIV-SAAALKGTDKVLEIGPGLGPLTELLLT-EAGSVLAIDLDRRLVDFLKERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           ++  N   ++ DDAL     +  +     +++ANLPY++ + +L  
Sbjct: 60  AETKNP-TLLHDDALGY-LRRGPHDWHDWKLVANLPYSVASPILVE 103


>gi|90103246|gb|ABD85468.1| erythromycin resistance methylase [Streptococcus pneumoniae]
          Length = 191

 Score = 43.5 bits (101), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|159466026|ref|XP_001691210.1| ribosomal RNA adenine methylase transferase [Chlamydomonas
           reinhardtii]
 gi|158279182|gb|EDP04943.1| ribosomal RNA adenine methylase transferase [Chlamydomonas
           reinhardtii]
          Length = 203

 Score = 43.5 bits (101), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 34/166 (20%)

Query: 85  ILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           IL+DI ++     L+++  DA+K         +  ++++ANLPYNI   LL   +     
Sbjct: 56  ILRDIVAAAAVPELQLVHGDAVK---------AKRVKVVANLPYNITKELLQLLLPLGG- 105

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
                 L L+ Q E GER+T  + +P         G R      F IS   + P P V  
Sbjct: 106 --LVSDLHLMLQHEAGERLT--ERTP---------GGR---EYRFRISRFKYDPVPGVDG 149

Query: 204 TVIHFIPHLNPIPCCL-----ESLKKITQEAFGKRRKTLRQSLKRL 244
            ++ F   L P    L     ++L ++  +AF +RRK +R SL  L
Sbjct: 150 ALVTFA--LRPPGARLQVPSEQALMELVDKAFSERRKKMRNSLSPL 193


>gi|307092014|gb|ADN28342.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 43.5 bits (101), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++I  ++       V+EIG G G LT++LL   A  V+ IE D++    L++  +
Sbjct: 2   DGNQLRRIVGAAALQPTDKVLEIGPGLGPLTELLLA-EAGTVLAIEMDRRLMDYLRERFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++L ++ DDAL     +  +     +++ANLPY++ + +L  
Sbjct: 61  NQ-SQLTLLHDDALGY-LRRGPHDWHDWKLVANLPYSVASPILVE 103


>gi|212722044|ref|NP_001131280.1| hypothetical protein LOC100192593 [Zea mays]
 gi|194691072|gb|ACF79620.1| unknown [Zea mays]
          Length = 159

 Score = 43.5 bits (101), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  IA  +    G  V+E+G G GNLT  LL   A +V  +E D   
Sbjct: 50  KPRGQHLLTNPRVLDAIARHAAISPGDAVLEVGPGTGNLTARLLASQAARVTAVEID--- 106

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
                      P  +E +   A  +     F +  P R
Sbjct: 107 -----------PRMVEAVTARAAALGLAHKFKVRPPAR 133


>gi|3294231|emb|CAA11706.1| mono-methyl transferase [Streptomyces ambofaciens]
          Length = 259

 Score = 43.5 bits (101), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 29/202 (14%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           V+E+GAG G LT+ L    +R++   E D +  P L+   +  P+ + ++  D L     
Sbjct: 39  VLEVGAGKGALTEPLARR-SRELHAYEIDSRLVPGLRTRFAAAPH-VRVVAGDFLAARPP 96

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
           +     +P  +  N+P++  T  + +W       P     TL+ Q E      A+K +  
Sbjct: 97  R-----TPFSVAGNVPFSR-TADIVDWCLGA---PALTDATLITQLEY-----ARKRTGD 142

Query: 171 YGRLSVLT-------GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLES 221
           YGR ++LT        WR    ++  +S + F P+P+V + V+       P+        
Sbjct: 143 YGRWTLLTVRTWPHHEWR----LVGRVSRYGFRPAPRVDAGVLRIERRATPLLTGAAQHG 198

Query: 222 LKKITQEAFGKRRKTLRQSLKR 243
            + + +  F     +L  SL+R
Sbjct: 199 WRDLVELGFSGVGGSLHASLRR 220


>gi|307091896|gb|ADN28283.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 43.5 bits (101), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KD 88
           +D ++ +++A + G+  G  V ++GAG G LT  L   GAR V+ +E D  +   L  + 
Sbjct: 1   VDRSLARRMAATVGA--GELVFDLGAGTGALTIPLARAGAR-VVSVEADPTWADRLLGRL 57

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           + +     +E++  D L V        S P R+++N PY I T LL   +      P+  
Sbjct: 58  VGAGLSGNVELVVGDILDVPLP-----SEPYRVVSNPPYGITTALLRRLLERPERGPYRA 112

Query: 149 SLTL 152
            L L
Sbjct: 113 DLLL 116


>gi|307092016|gb|ADN28343.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 43.5 bits (101), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 32  DLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           D N L++I  S+ +L G   V+EIG G G LT++LLT  A  V+ I+ DQ+    LK+  
Sbjct: 2   DGNQLRRIV-SAAALKGTDKVLEIGPGLGPLTELLLT-EAGSVLAIDLDQRLVDFLKERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           ++  N L +  DDA      +  +     +++ANLPY++ + +L  
Sbjct: 60  AETKN-LTLPHDDAPGY-LRRGPHDWHDWKLVANLPYSVASPILVE 103


>gi|306834410|ref|ZP_07467525.1| rRNA adenine N-6-methyltransferase [Streptococcus bovis ATCC
           700338]
 gi|62467678|gb|AAX84025.1| erythromycin ribosome methylase [Streptococcus pasteurianus]
 gi|288856432|emb|CAY48681.1| 23S rRNA methylase [Staphylococcus aureus subsp. aureus ST398]
 gi|296777676|gb|ADH43093.1| erythromycin rRNA methylase protein [uncultured bacterium MID12]
 gi|304423439|gb|EFM26590.1| rRNA adenine N-6-methyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 244

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 22/250 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + +I  +        +IEIG+G G+ T   L      V  IE D +   I
Sbjct: 9   SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFT-FELAKRCNYVTAIEIDPKLCRI 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            K+   ++ N  ++I  D L+  F K    +   +I  N+PYNI T ++   +   T   
Sbjct: 68  TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +    L+ +    +R+     S     L++        +++  I    F P P+V S++
Sbjct: 123 SY----LIVEYGFAKRLLNTNRS-----LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA-ENL 264
           I    H  P    L+  K+          K + +   +L  +N  +QA     +    N+
Sbjct: 174 IVLKRH--PSKISLKDRKQYENFVM----KWVNKEYIKLFSKNQFYQALKYARIDDLNNI 227

Query: 265 SIEDFCRITN 274
           S E F  + N
Sbjct: 228 SFEQFLSLFN 237


>gi|164604807|gb|ABY61964.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 228

 Score = 43.1 bits (100), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 15  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 69

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 70  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 121

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 122 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 166


>gi|159161735|gb|ABW95861.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|2317796|gb|AAC45552.1| rRNA N-6-methyltransferase [Staphylococcus chromogenes]
          Length = 244

 Score = 43.1 bits (100), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+ YNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIRYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I     LN     +    K     F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226

Query: 264 LSIEDFCRITN 274
           +S E F  + N
Sbjct: 227 ISFEQFLSLFN 237


>gi|159161757|gb|ABW95872.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 27/207 (13%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
            +     L +L   +     +  +    F P PKV S +I    H   +P     L    
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYF 179

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQA 253
              + KR        ++L  +N  HQA
Sbjct: 180 VSKWVKR------EYRQLFTKNQFHQA 200


>gi|2764999|emb|CAA70208.1| adenine methylase [Staphylococcus hyicus]
          Length = 244

 Score = 43.1 bits (100), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 23/185 (12%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISAD 141
            ++    H N  +++  D L+  F K    +   +I  ++PYNI T    +++F  I+ +
Sbjct: 68  TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGSIPYNISTDIIRKVVFESIADE 122

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           ++        L+ +    +R+   K S     L++L       +++  +    F P PKV
Sbjct: 123 SY--------LIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKV 169

Query: 202 TSTVI 206
            S++I
Sbjct: 170 NSSLI 174


>gi|256825598|ref|YP_003149558.1| dimethyladenosine transferase (rRNA methylation) [Kytococcus
           sedentarius DSM 20547]
 gi|256688991|gb|ACV06793.1| dimethyladenosine transferase (rRNA methylation) [Kytococcus
           sedentarius DSM 20547]
          Length = 244

 Score = 43.1 bits (100), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            + DG  +IEIG G G LT  L  LG R V  +E D +    L +    H   +E++ DD
Sbjct: 2   AATDG-PIIEIGPGDGALTSPLAQLG-RPVTAVEIDTRLAQRLAERLGPH---VEVVADD 56

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            L        ++     ++ NLP++  T +L   + +    P W    +L Q EV  R
Sbjct: 57  FLAYRLPTSAHV-----LVGNLPFHQTTAMLRQILHS----PAWTDAIVLVQWEVARR 105


>gi|83702392|gb|ABC41552.1| erythromycin ribosome methylase [Gemella morbillorum]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 15/182 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L +I +     +  T  EIG G G+LT  L  + +++V  IE D   F +  D   +  
Sbjct: 3   VLNQIIKQLNLKETDTFYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSD-KLKLN 60

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
            R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + L+ 
Sbjct: 61  IRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIV 112

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           ++   +R      +     L +L   +     +  +    F P PKV+S +I    H   
Sbjct: 113 EEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVSSVLIKLTRHTTD 167

Query: 215 IP 216
           +P
Sbjct: 168 VP 169


>gi|2326854|emb|CAA70206.1| adenine methylase [Staphylococcus hominis]
          Length = 244

 Score = 42.7 bits (99), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 89/227 (39%), Gaps = 24/227 (10%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            + EIG+G G+ T + L      V  IE D +     +     H N  +++  D L+  F
Sbjct: 33  NIFEIGSGKGDFT-LELVQRCNFVTAIEIDHKLCKTTEKKLVDHDN-FQVLNKDILQFKF 90

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
            K    +   +I  N+PYNI T +    I    +    + + L+ +    +R+   K S 
Sbjct: 91  PK----NQSYKIFGNIPYNISTDI----IRKIVFDSIADEIYLIVEYGFAKRLLNTKRS- 141

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229
               L++        +++  +    F P PKV S++I     LN     +    K     
Sbjct: 142 ----LALFLMAEVDISILSMVPREYFHPKPKVNSSLI----RLNRKKSRISHKDKQKYNY 193

Query: 230 FGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           F  +   K  ++   +    N L  AGI+      N+S E F  + N
Sbjct: 194 FVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNNISFEQFLSLFN 237


>gi|124365209|gb|ABN09636.1| ErmB [Streptococcus pyogenes]
          Length = 198

 Score = 42.7 bits (99), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 11  TVFEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 66  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162


>gi|159161716|gb|ABW95852.1| ErmB [uncultured bacterium]
 gi|159161739|gb|ABW95863.1| ErmB [uncultured bacterium]
 gi|159161747|gb|ABW95867.1| ErmB [uncultured bacterium]
 gi|159161753|gb|ABW95870.1| ErmB [uncultured bacterium]
 gi|159161772|gb|ABW95879.1| ErmB [uncultured bacterium]
 gi|159161800|gb|ABW95893.1| ErmB [uncultured bacterium]
 gi|159161803|gb|ABW95894.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|322820265|gb|EFZ26937.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi]
          Length = 482

 Score = 42.7 bits (99), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 13/170 (7%)

Query: 117 SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           + + ++ANLP+++ T LL  +        + +      L +  QKE+ ERI A   S H+
Sbjct: 281 AKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEIAERIIAPAGSIHF 340

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF- 230
            RLSVL        M        ++P  +V   ++   P   P+   +++   I      
Sbjct: 341 SRLSVLCQCFFHVQMRQTFKEMTYYPKTEVLGAMLTLQPRSVPLVPGMDAATLIHFTDLL 400

Query: 231 ---GKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
              G+R  T+ ++L +       + +L +  ++  L   +L+ E+ C++ 
Sbjct: 401 MKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEICKLA 450



 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGP 58
           K+  LK +   +K+    Y+    Q F+L+L     I+  ++ ++       ++E+G G 
Sbjct: 70  KAEGLKHL---FKVPHAGYLAKYDQRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGT 126

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G LT+ LLT     V+ IE D++F   L+ I      +   +  D L+V+
Sbjct: 127 GALTRSLLTRPCVAVLGIEADERFNAHLEQIRQYTDGKFHWVNADVLRVN 176


>gi|159161718|gb|ABW95853.1| ErmB [uncultured bacterium]
 gi|159161726|gb|ABW95857.1| ErmB [uncultured bacterium]
 gi|159161743|gb|ABW95865.1| ErmB [uncultured bacterium]
 gi|159161749|gb|ABW95868.1| ErmB [uncultured bacterium]
 gi|159161770|gb|ABW95878.1| ErmB [uncultured bacterium]
 gi|159161796|gb|ABW95891.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|307091878|gb|ADN28274.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 42.7 bits (99), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 12/122 (9%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +DLN++  I  ++       V+E+G G G+LT  + +  A  ++ +E D+ F P+ +++ 
Sbjct: 1   IDLNLIDLIGRTAELSKADAVLEVGTGTGSLTARMAS-EAGMIVTVEIDRSFAPVAQEVI 59

Query: 91  SQHPNRLEIIQD-----DALKVDFEKFFNISSPI------RIIANLPYNIGTRLLFNWIS 139
            +  N   +  D       L       ++ ++ +      +++ANLPY I T L+ N + 
Sbjct: 60  GRRGNVRHVFGDCLAKKSELNPSMLAAWDEAAKLPGIKHRKLVANLPYVIATPLISNLLC 119

Query: 140 AD 141
           +D
Sbjct: 120 SD 121


>gi|332796502|ref|YP_004458002.1| rRNA adenine methylase transferase [Acidianus hospitalis W1]
 gi|332694237|gb|AEE93704.1| rRNA adenine methylase transferase [Acidianus hospitalis W1]
          Length = 218

 Score = 42.7 bits (99), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 30/185 (16%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           + QNFL+D   + K +    + D   V+E+G G GN+++++        + IE D +F  
Sbjct: 3   LSQNFLIDKFFIFKFSSYVKN-DIKPVVEVGCGKGNISKVI-----NPDLCIEIDDKFIK 56

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            LK  +        +I  DA      +F  I    +I+++LPY+I           D   
Sbjct: 57  YLKSYN--------LIIADA------RFLPIKRG-QIVSSLPYSITEDFFLEVSKLDQVI 101

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
               SL L+ QK+  ++I    N   Y  +S L  +         I P  F PSPKV S 
Sbjct: 102 ----SLVLILQKDFIDKIL---NYATY--ISFLLNYIFDIKTHEVIPPSAFTPSPKVYSI 152

Query: 205 VIHFI 209
           ++ F+
Sbjct: 153 IVTFM 157


>gi|3646270|emb|CAA08815.1| putative dimethyladenosine transferase [Homo sapiens]
          Length = 157

 Score = 42.7 bits (99), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220
           R+ A+     Y RLS+ T    +   +  +  + F P PKV S+V+   P   P P   +
Sbjct: 6   RLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQ 65

Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIEDFCRITNI 275
               + +  F ++ KTL  + K    + LL +       +   +  E+ SI D  +I  I
Sbjct: 66  EWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHNIIIPEDFSIAD--KIQQI 123

Query: 276 LT 277
           LT
Sbjct: 124 LT 125


>gi|82698219|gb|ABB89115.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|91983298|gb|ABE68714.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|126583349|gb|ABO21677.1| ErmB [Streptococcus uberis]
          Length = 198

 Score = 42.7 bits (99), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 11  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 66  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162


>gi|307091998|gb|ADN28334.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 114

 Score = 42.7 bits (99), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D ++  ++A +  +  G  V+++GAG G LT  +   GAR V+ +E D  +   L    
Sbjct: 1   VDRSVAARMAATVTA--GELVLDLGAGTGALTVPMAEAGAR-VVAVEADPVWAEKLAGRL 57

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           ++    +E++  D L V        S P R++AN P+ + T LL   +      P+   L
Sbjct: 58  AKSGLTVEVVAGDILAVPLP-----SEPYRVVANPPFGVTTALLRRLLDQPERGPYQADL 112

Query: 151 TL 152
            L
Sbjct: 113 LL 114


>gi|2245604|gb|AAB62551.1| adenine N-6-methyltransferase [Enterococcus faecalis]
          Length = 219

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 6   TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 60

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 61  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 112

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV   +I    H   +P
Sbjct: 113 RT-----LGLLLHTQVSIQQLLKLPXECFHPKPKVNGVLIKLTRHTTDVP 157


>gi|159161728|gb|ABW95858.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQI----IKEVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|18657023|gb|AAL78110.1|AC093568_20 Putative dimethyladenosine transferse [Oryza sativa]
 gi|21321757|gb|AAM47292.1|AC122146_11 Putative dimethyladenosine transferse [Oryza sativa Japonica
          Group]
          Length = 120

 Score = 42.4 bits (98), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
          +K  GQ+ L +  ++  I E +G     TV+EIG G GNLT+ LL  G + V+ +E D
Sbjct: 35 EKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVELD 92


>gi|81174759|gb|ABB58921.1| ErmA [Streptococcus pyogenes]
 gi|81174761|gb|ABB58922.1| ErmB [Streptococcus pyogenes]
 gi|82698215|gb|ABB89113.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|82698217|gb|ABB89114.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|124365205|gb|ABN09634.1| ErmB [Streptococcus pneumoniae]
 gi|124365211|gb|ABN09637.1| ErmB [Streptococcus pneumoniae]
 gi|126693546|gb|ABO26567.1| ErmB [Streptococcus agalactiae]
          Length = 198

 Score = 42.4 bits (98), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 11  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 66  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162


>gi|159161733|gb|ABW95860.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ ++PY++ T++    I    +      + 
Sbjct: 58  KLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIY 109

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164

Query: 212 LNPIP 216
              +P
Sbjct: 165 TTNVP 169


>gi|159161737|gb|ABW95862.1| ErmB [uncultured bacterium]
 gi|159161745|gb|ABW95866.1| ErmB [uncultured bacterium]
 gi|159161768|gb|ABW95877.1| ErmB [uncultured bacterium]
 gi|159161794|gb|ABW95890.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|159161751|gb|ABW95869.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L         +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTHVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|124365203|gb|ABN09633.1| ErmB [Streptococcus pyogenes]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|90660160|gb|ABD97341.1| erythromycin resistance protein [Streptococcus pneumoniae]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|159161720|gb|ABW95854.1| ErmB [uncultured bacterium]
 gi|159161724|gb|ABW95856.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVDSVLIKLTRHTTDVP 169


>gi|307091940|gb|ADN28305.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 42.4 bits (98), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 16/123 (13%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDI 89
           +DLN+L+ I  ++       V+E+G G G+LT Q+ L  GA  V  +E D    P+ + I
Sbjct: 1   IDLNLLELIVRTAELDSSDAVLEVGTGTGSLTSQLALRSGA--VCTVEIDTGLAPVARQI 58

Query: 90  SSQHPNRLEIIQDDALKVD-------FEKFFNISSPIR-----IIANLPYNIGTRLLFNW 137
             +  N +  +  D L             +  +++  R     ++ANLPY+I T L+ N 
Sbjct: 59  VGESHN-VRFVHADCLSKKSLLNPEMLTAWDEVAAKHRCTRRKLVANLPYSIATPLISNL 117

Query: 138 ISA 140
           + A
Sbjct: 118 LVA 120


>gi|159161764|gb|ABW95875.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGRGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|89242975|gb|ABD64743.1| erythromycin resistance protein [Streptococcus pyogenes]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|90994360|gb|ABE03746.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes]
          Length = 198

 Score = 42.4 bits (98), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 11  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQ 65

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 66  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 117

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162


>gi|90103248|gb|ABD85469.1| erythromycin resistance methylase [Streptococcus pyogenes]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 12  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 66

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 67  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIH 118

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 119 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|730033|sp|Q00014|ERMG_LACRE RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|148728|gb|AAA98096.1| methylase [Plasmid pGT633]
          Length = 244

 Score = 42.4 bits (98), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 22/250 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + +I  +        +IEIG+G G+ +   L      V  IE D +   I
Sbjct: 9   SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFS-FELAKRCNYVTAIEIDPKLCRI 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            K+   ++ N  ++I  D L+  F K    +   +I  N+PYNI T ++   +   T   
Sbjct: 68  TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIFGNIPYNISTDIIRKIVFESTATE 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +    L+ +    +R+     S     L++        +++  I    F P P+V S++
Sbjct: 123 SY----LIVEYGFAKRLLNTNRS-----LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA-ENL 264
           I    H  P    L+  K+          K + +   +L  +N  +QA     +    N+
Sbjct: 174 IVLKRH--PSKISLKDRKQYENFVM----KWVNKEYIKLFSKNQFYQALKYARIDDLNNI 227

Query: 265 SIEDFCRITN 274
           S E F  + N
Sbjct: 228 SFEQFLSLFN 237


>gi|195394850|ref|XP_002056052.1| GJ10435 [Drosophila virilis]
 gi|194142761|gb|EDW59164.1| GJ10435 [Drosophila virilis]
          Length = 471

 Score = 42.4 bits (98), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           G     TV+E+  GPG  T+ LL      RK+I+IE  + F P L+++ + +P+R+++  
Sbjct: 79  GQTKCDTVLELNPGPGYFTKHLLDRETQFRKIILIESMEHFMPRLQELHALYPDRVKVRH 138

Query: 102 DD 103
            D
Sbjct: 139 GD 140


>gi|14521938|ref|NP_127415.1| methyltransferase related protein [Pyrococcus abyssi GE5]
 gi|5459158|emb|CAB50644.1| Methyltransferase related protein [Pyrococcus abyssi GE5]
          Length = 208

 Score = 42.0 bits (97), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           +A + G ++G  + ++GAG G L+   L+LGA+KV  +E D+    ILK    +   + E
Sbjct: 39  MAYTLGDIEGKVIADLGAGTGVLSYGALSLGAKKVYAVEVDEDAVEILKTNLKKFEGKFE 98

Query: 99  IIQDD 103
           +   D
Sbjct: 99  VFIGD 103


>gi|159161807|gb|ABW95896.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T+++   +        +ES   +    V E    + 
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQIIKKVV--------FESHASVIYLIVEEGFYKRT 120

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
              H   L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 121 LDIH-RTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|109019771|ref|XP_001088795.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Macaca
           mulatta]
 gi|90085601|dbj|BAE91541.1| unnamed protein product [Macaca fascicularis]
          Length = 396

 Score = 42.0 bits (97), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++E   GPG LT+ LL  GA  V+ +E D+ F P L+ +      +L +I  D  ++D  
Sbjct: 99  LLECNPGPGILTEALLEAGA-TVVALESDKTFIPHLESLGKNLDGKLRVIHCDFFRIDPR 157

Query: 111 KFFNISSPIRIIANLPYNIGT 131
               I  P      L  N+G 
Sbjct: 158 SGGAIKPPAMSSEGLFKNLGV 178


>gi|124365207|gb|ABN09635.1| ErmB [Streptococcus pyogenes]
          Length = 191

 Score = 42.0 bits (97), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV 107
           V EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+ 
Sbjct: 13  VYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQF 67

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
            F          +I+ N+PY++ T++    I    +      + L+ ++   +R      
Sbjct: 68  QFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIHR 119

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 120 T-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 163


>gi|307092030|gb|ADN28350.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 42.0 bits (97), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++I  ++       V+EIG G G LT++LL   A  V+ IE D++    L++  +
Sbjct: 2   DGNQLRRIVGAAALQPTDKVLEIGPGLGPLTELLLA-EAGTVLAIEMDRRLMDYLRERFA 60

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              ++L ++ DDAL     +  +     +++ANLPY++ + +L  
Sbjct: 61  NL-SQLTLLHDDALGY-LRRGPHDWHDWKLVANLPYSVASPILVE 103


>gi|2407671|gb|AAC33146.1| rRNA N-6-methyltransferase [Staphylococcus simulans]
          Length = 244

 Score = 42.0 bits (97), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 99/251 (39%), Gaps = 24/251 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T + L      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+ YNI T +    I    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIRYNISTDI----IRKIVFDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I     LN     +    K     F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 I----RLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDD---LNN 226

Query: 264 LSIEDFCRITN 274
           +S E F  + N
Sbjct: 227 ISFEQFLSLFN 237


>gi|78066348|ref|YP_369117.1| ribosomal RNA adenine methylase transferase [Burkholderia sp. 383]
 gi|77967093|gb|ABB08473.1| ribosomal RNA adenine methylase transferase [Burkholderia sp. 383]
          Length = 238

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           DG TVIE+GAG G  T+ LL  G  + +++++E D  F   L+    Q P  L I+Q DA
Sbjct: 41  DGATVIELGAGTGVFTRALLARGVASDRLVLVEADPAFANTLRH---QFPA-LRIMQMDA 96

Query: 105 LKVDFE-KFFNISSPIRIIANLP 126
           + +     FF  +    +++ LP
Sbjct: 97  VHLGMTGDFFGGARADAVVSGLP 119


>gi|84663565|gb|ABC60096.1| erythromycin ribosome methylase [Gemella haemolysans]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ N+PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFSKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F   PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIQQLLKLPAECFHLKPKVNSVLIKLTRHTTDVP 169


>gi|159161792|gb|ABW95889.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 18  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 72

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 73  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 124

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 125 RT-----LGLLLHTQVSIKQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 169


>gi|55378762|ref|YP_136612.1| hypothetical protein rrnAC2049 [Haloarcula marismortui ATCC 43049]
 gi|55231487|gb|AAV46906.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 261

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
           ++G   +E GAG GN T  LL  GA++V  +  D      ++D I  ++ +RL +I+ D
Sbjct: 37  VEGRVCLEAGAGVGNTTAGLLAAGAKRVYAVTNDADHAATVRDRIGDRNADRLAVIEAD 95


>gi|315607569|ref|ZP_07882564.1| possible DNA-methyltransferase [Prevotella buccae ATCC 33574]
 gi|315250752|gb|EFU30746.1| possible DNA-methyltransferase [Prevotella buccae ATCC 33574]
          Length = 477

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G T++E  AG GN+   L   GA KVI  EKD     +L         + +II DD L V
Sbjct: 29  GKTILEPSAGKGNIVDWLKKNGAGKVIACEKDTNIKKLLN-------GKCDIIADDFLTV 81

Query: 108 DFEKFFNISSPIRIIANLPYNIGTR 132
             E+   IS    I+ N P++ G +
Sbjct: 82  SSEQ---ISHVDYIVMNPPFSEGAK 103


>gi|33413476|gb|AAM97535.1| ErmC [Trypanosoma brucei]
          Length = 467

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)

Query: 119 IRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
           + +IANLP+NI T LL  +        + +      L +  Q+EV E I A   S H+ R
Sbjct: 281 LEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEVAECIIAPAGSIHFSR 340

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF--- 230
           LSVL        ++       ++P   V   +I   P   P+   L  L   T   F   
Sbjct: 341 LSVLCQCFFHTQLLRTFREMTYYPKTAVLGALITLQPRAVPL---LPGLDAATLIHFTDL 397

Query: 231 ----GKR----RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G+R     K L+Q +     + +L +   +  L   +L+ E+ C++  +
Sbjct: 398 LMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTTEEVCKLATL 450



 Score = 39.3 bits (90), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYM---GQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGP 58
           K+  LK +   +K+    Y+   GQ F+L+L +  ++A     ++       ++E+G G 
Sbjct: 49  KAEGLKQL---FKVPHAGYLAKYGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGA 105

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G LT+ LLT     V+ IE+D++F   L+ I      + +    D L+++
Sbjct: 106 GALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTSGKFQWTNGDVLRIN 155


>gi|299141639|ref|ZP_07034775.1| conserved hypothetical protein [Prevotella oris C735]
 gi|298576975|gb|EFI48845.1| conserved hypothetical protein [Prevotella oris C735]
          Length = 477

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G T++E  AG GN+   L   GA KVI  EKD     +L         + +II DD L V
Sbjct: 29  GKTILEPSAGKGNIVDWLKKNGAGKVIACEKDTNIKKLLN-------GKCDIIADDFLTV 81

Query: 108 DFEKFFNISSPIRIIANLPYNIGTR 132
             E+   IS    I+ N P++ G +
Sbjct: 82  SSEQ---ISHVDYIVMNPPFSEGAK 103


>gi|126693572|gb|ABO26571.1| ErmB [Streptococcus agalactiae]
          Length = 198

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 11  TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 65

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F          +I+ ++PY++ T++    I    +      + L+ ++   +R     
Sbjct: 66  FQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIH 117

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
            +     L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 118 RT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 162


>gi|71747126|ref|XP_822618.1| rRNA dimethyltransferase [Trypanosoma brucei TREU927]
 gi|70832286|gb|EAN77790.1| rRNA dimethyltransferase, putative [Trypanosoma brucei]
          Length = 467

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)

Query: 119 IRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
           + +IANLP+NI T LL  +        + +      L +  Q+EV E I A   S H+ R
Sbjct: 281 LEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEVAECIIAPAGSIHFSR 340

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF--- 230
           LSVL        ++       ++P   V   +I   P   P+   L  L   T   F   
Sbjct: 341 LSVLCQCFFHTQLLRTFREMTYYPKTAVLGALITLQPRAVPL---LPGLDAATLIHFTDL 397

Query: 231 ----GKR----RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G+R     K L+Q +     + +L +   +  L   +L+ E+ C++  +
Sbjct: 398 LMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTTEEVCKLATL 450



 Score = 38.9 bits (89), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYM---GQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGP 58
           K+  LK +   +K+    Y+   GQ F+L+L +  ++A     ++       ++E+G G 
Sbjct: 49  KAEGLKQL---FKVPHAGYLAKYGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGA 105

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G LT+ LLT     V+ IE+D++F   L+ I      + +    D L+++
Sbjct: 106 GALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTNGKFQWTNGDVLRIN 155


>gi|159161774|gb|ABW95880.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ N+PY++ T++    I    +      + 
Sbjct: 58  KLNTRVTLIHQDILQFQFPN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIY 109

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P P V S +I    H
Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPIVNSVLIKLTRH 164

Query: 212 LNPIP 216
              +P
Sbjct: 165 TTDVP 169


>gi|207340778|gb|EDZ69021.1| YPL266Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 204

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           I+N PY I + L+F  I+    P       L+FQ+E   R+ A+     Y RLS      
Sbjct: 12  ISNTPYQISSPLVFKLINQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMW 68

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHF 208
              T +  +  + F P P+V S+V+  
Sbjct: 69  ANVTHIMKVGKNNFRPPPQVESSVVRL 95


>gi|169883510|gb|ACA97850.1| putative dimethyladenosine transferase [VK grapevine yellows
           phytoplasma type A]
          Length = 396

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 47  DGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD-------ISSQHPNRLE 98
           DG  ++E+GAG GN+T+ L+   G + VI +E D     +L+D       I     N ++
Sbjct: 282 DGEKILELGAGSGNVTKYLIKKFGVKNVIALEYDNHLCQVLRDKYKGLQVIEGDACNFIK 341

Query: 99  IIQDDALKVD 108
           ++QD  + +D
Sbjct: 342 LLQDKNVGID 351


>gi|149040853|gb|EDL94810.1| transcription factor B2, mitochondrial [Rattus norvegicus]
          Length = 367

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           ++E   GPG LT  LL  GAR V+  E ++ F P L+ +       L+++  D  K+D
Sbjct: 99  ILECNPGPGILTGALLKAGAR-VVAFESEKMFIPHLESLRKNADGELQVVHCDFFKID 155


>gi|164687690|ref|ZP_02211718.1| hypothetical protein CLOBAR_01332 [Clostridium bartlettii DSM
           16795]
 gi|457208|gb|AAC36915.1| 23S rRNA methlyase [Clostridium perfringens]
 gi|164603464|gb|EDQ96929.1| hypothetical protein CLOBAR_01332 [Clostridium bartlettii DSM
           16795]
 gi|1092864|prf||2102192A 23S rRNA methylase
          Length = 257

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 11/184 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           + QNF+   N + K+ + +       VIEIG G G++T+ L    +  V  IE D+  + 
Sbjct: 16  VSQNFITSKNTIYKLIKKTNISKNDFVIEIGPGKGHITEALCE-KSYWVTAIELDRSLYG 74

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            L +   +  N + +I  D L     K        ++ +N+P+ I T+++   +  +   
Sbjct: 75  NLIN-KFKSKNNVTLINKDFLNWKLPK----KREYKVFSNIPFYITTKIIKKLLLEELNS 129

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
           P    + L+ +K   +R       P   +LS+L   +    ++   +   F P P V   
Sbjct: 130 P--TDMWLVMEKGSAKRFMG---IPRESKLSLLLKTKFDIKIVHYFNREDFHPMPSVDCV 184

Query: 205 VIHF 208
           +++F
Sbjct: 185 LVYF 188


>gi|307091866|gb|ADN28268.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 16/128 (12%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +DLN+L  I  ++G      VIE+G+G G LT   +   A  V+ +E D  F+ + ++ +
Sbjct: 1   IDLNLLDVIINAAGLSKDDLVIEVGSGTGGLTARHVE-EAGAVLSVEIDPAFYQLTQE-T 58

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSP------------IRIIANLPYNIGTRLLFNWI 138
            +   R+ +I  D L+   +    +  P            ++++ANLPY + T ++ N++
Sbjct: 59  IRESERVVLINADVLETKNKLNPEVLEPLARLRESSGLKRLKLVANLPYAVATPVISNFL 118

Query: 139 SADTWPPF 146
             D   PF
Sbjct: 119 LTDL--PF 124


>gi|307091864|gb|ADN28267.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 4/105 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D + L++I E +       V+EIG G G LT++L+   A  V+ IE D++   IL+  S 
Sbjct: 2   DAHQLRRIIELARLQPDDFVLEIGPGLGPLTELLVEKSAH-VLAIELDRRLIEILE--SH 58

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
               +L+I+  D L    +K  + S+  ++++NLPY++ + +L  
Sbjct: 59  LQSPKLKIVHGDGLGYVRDKTRDWSN-WKLVSNLPYSVASPILVE 102


>gi|56605644|ref|NP_001008294.1| dimethyladenosine transferase 2, mitochondrial [Rattus norvegicus]
 gi|81883501|sp|Q5U2T7|TFB2M_RAT RecName: Full=Dimethyladenosine transferase 2, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 2;
           AltName: Full=Mitochondrial transcription factor B2;
           Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 2; Flags:
           Precursor
 gi|55249767|gb|AAH85870.1| Transcription factor B2, mitochondrial [Rattus norvegicus]
          Length = 397

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           ++E   GPG LT  LL  GAR V+  E ++ F P L+ +       L+++  D  K+D
Sbjct: 99  ILECNPGPGILTGALLKAGAR-VVAFESEKMFIPHLESLRKNADGELQVVHCDFFKID 155


>gi|164653711|gb|ABY65241.1| erythromycin resistance methylase [Streptococcus suis]
 gi|164653713|gb|ABY65242.1| erythromycin resistance methylase [Streptococcus suis D9]
          Length = 198

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            VIEIG+G G+ T+ L+ + +R V  IE D+    + + +     N +++I  D LK +F
Sbjct: 2   NVIEIGSGKGHFTKELVKM-SRWVDSIEIDEDLCQVTQKVVKPFQN-IKVIHTDILKFNF 59

Query: 110 EKFFNISSPIRIIANLPYNIGTRLL 134
            K    +   +I  N+P+NI T ++
Sbjct: 60  PK----NKDYKIFGNIPFNISTDIV 80


>gi|311894003|dbj|BAJ26411.1| hypothetical protein KSE_05680 [Kitasatospora setae KM-6054]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ +GQ+FL    I  ++ E +G   G  V+E+GAG G L+  +   G R +  +EKD +
Sbjct: 27  RRDLGQHFLRSPGIATRLLELAGLHAGDAVLEVGAGLGTLSAAVARAGHR-IWAVEKDPR 85

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
               L      +  R   +  D   VD ++   + +
Sbjct: 86  VAEALCAALEPYGERARPLLSDVRAVDLDRELPVGT 121


>gi|155965922|gb|ABU40943.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            VIEIG+G G+ T+ L+ + +R V  IE D+    + + +     N +++I  D LK +F
Sbjct: 20  NVIEIGSGKGHFTKELVKM-SRWVDSIEIDEDLCQVTQKVVKPFQN-IKVIHTDILKFNF 77

Query: 110 EKFFNISSPIRIIANLPYNIGTRLL 134
            K    +   +I  N+P+NI T ++
Sbjct: 78  PK----NKDYKIFGNIPFNISTDIV 98


>gi|218473458|emb|CAV31168.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 21/167 (12%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDF 109
           EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+  F
Sbjct: 1   EIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQFQF 55

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
                     +I+ N+PY++ T++    I    +      + L+ ++   +R      + 
Sbjct: 56  PN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIHRT- 106

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
               L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 107 ----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 149


>gi|261332379|emb|CBH15374.1| rRNA dimethyltransferase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 467

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 19/173 (10%)

Query: 119 IRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
           + +IANLP+NI T LL  +        + +      L +  Q+EV E I A   S H+ R
Sbjct: 281 LEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEVAECIIAPAGSIHFSR 340

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF--- 230
           LSVL        ++       ++P   V   ++   P   P+   L  L   T   F   
Sbjct: 341 LSVLCQCFFHTQLLRTFREMTYYPKTAVLGALVTLQPRAVPL---LPGLDAATLIHFTDL 397

Query: 231 ----GKR----RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G+R     K L+Q +     + +L +   +  L   +L+ E+ C++  +
Sbjct: 398 LMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTAEEVCKLATL 450



 Score = 39.3 bits (90), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYM---GQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGP 58
           K+  LK +   +K+    Y+   GQ F+L+L +  ++A     ++       ++E+G G 
Sbjct: 49  KAEGLKQL---FKVPHAGYLAKYGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGA 105

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G LT+ LLT     V+ IE+D++F   L+ I      + +    D L+++
Sbjct: 106 GALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTSGKFQWTNGDVLRIN 155


>gi|213626131|gb|AAI71547.1| Transcription factor B2, mitochondrial [Danio rerio]
          Length = 437

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 47  DGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
           DG  VI E   GPG LT+ LL  GA++V+ +E D  F P L ++ S+   +L+++  D  
Sbjct: 132 DGKAVIFECNPGPGVLTRALLNRGAQRVVALESDANFLPELLELESRLEGQLDVVHCDFF 191

Query: 106 KVD 108
           K+D
Sbjct: 192 KLD 194


>gi|159161766|gb|ABW95876.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 29/189 (15%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----RLLFNWISADTWPPFW 147
               R+ +I  D L+  F          +I+ ++PY++ T    +++F   ++D +    
Sbjct: 58  KLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQIIKKVVFESRASDIYL--- 110

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207
                     V E    ++    +  L +L   +     +  +    F P PKV S +I 
Sbjct: 111 ----------VVEEGFYKRTLDIHRTLGLLLHPQVSIQQLLKLPAECFHPKPKVNSVLIK 160

Query: 208 FIPHLNPIP 216
              H   +P
Sbjct: 161 LTRHTTDVP 169


>gi|165972415|ref|NP_001107089.1| dimethyladenosine transferase 2, mitochondrial [Danio rerio]
 gi|159155139|gb|AAI54810.1| Tfb2m protein [Danio rerio]
          Length = 437

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 47  DGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
           DG  VI E   GPG LT+ LL  GA++V+ +E D  F P L ++ S+   +L+++  D  
Sbjct: 132 DGKAVIFECNPGPGVLTRALLNRGAQRVVALESDANFLPELLELESRLEGQLDVVHCDFF 191

Query: 106 KVD 108
           K+D
Sbjct: 192 KLD 194


>gi|326392388|ref|ZP_08213803.1| ribosomal RNA adenine methylase transferase [Thermoanaerobacter
          ethanolicus JW 200]
 gi|325991572|gb|EGD50149.1| ribosomal RNA adenine methylase transferase [Thermoanaerobacter
          ethanolicus JW 200]
          Length = 59

 Score = 41.2 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
          GQNF+ D NIL KI  +SG      V+EIG G G LT+ L
Sbjct: 13 GQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEEL 52


>gi|307091926|gb|ADN28298.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +DLN++  I+ ++       V+E+G G G+LT   L   A +V+ IE D+ F P+ +   
Sbjct: 1   IDLNLIDLISRTAEPSKADAVLEVGTGTGSLTAR-LAAEAGQVVTIEIDRTFQPVAQQTV 59

Query: 91  SQHPNRLEIIQDDALK---VDFEKFFNISSPI--------RIIANLPYNIGTRLLFNWIS 139
               N   ++ D   K   ++ E                 +++ANLPY I T L+ N + 
Sbjct: 60  GPRENMTYLLGDCLAKKSELNPEMLATWDEAAAKPGITTRKLVANLPYVIATPLISNLLC 119

Query: 140 AD 141
           ++
Sbjct: 120 SE 121


>gi|146285381|gb|ABQ18266.1| ribosomal methylase [Streptococcus uberis]
          Length = 174

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 21/167 (12%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDF 109
           EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+  F
Sbjct: 1   EIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQFQF 55

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
                     +I+ N+PY++ T++    I    +      + L+ ++   +R      + 
Sbjct: 56  PN----KQRYKIVGNIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIHRT- 106

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
               L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 107 ----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 149


>gi|195572095|ref|XP_002104032.1| GD18660 [Drosophila simulans]
 gi|194199959|gb|EDX13535.1| GD18660 [Drosophila simulans]
          Length = 457

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           TV+E+ +GPG  T+ LL   +  R++I++E    F P ++++ + +P R+++ Q D
Sbjct: 72  TVMELNSGPGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGD 127


>gi|307091874|gb|ADN28272.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 40.8 bits (94), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 14/105 (13%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD----QQFFPIL 86
           +D  + +++ E+ G+  G  V+++GAG G LT  L   GAR V+ +E D    ++ F  L
Sbjct: 1   VDRFLARRMVETVGA--GELVLDLGAGTGALTIPLAQAGAR-VVAVEADPVWAERLFGQL 57

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
             + +     +E++  D L+V        S P R+++N PY I T
Sbjct: 58  --VGAGLSGMVELVVGDMLEVPLP-----SEPYRVVSNPPYGITT 95


>gi|169883512|gb|ACA97851.1| putative dimethyladenosine transferase [VK grapevine yellows
           phytoplasma type B]
          Length = 394

 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA- 104
           DG  ++E+GAG GN+T+ L+   G + VI +E D     +L+D        L++I+ DA 
Sbjct: 280 DGEKILELGAGSGNVTKYLIHKFGVKNVIALEYDNHLCQVLRD----KYEGLQVIEGDAC 335

Query: 105 --LKVDFEKFFNISSPIRIIANLPYNIGT 131
             +K+  +K   I     I++ LP ++ T
Sbjct: 336 NFIKLLKDKKVGIDKIKGIVSTLPLSVFT 364


>gi|307091972|gb|ADN28321.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 114

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V+++GAG G LT  L   GAR V+ +E D  +   L    +     +E++  D L V
Sbjct: 16  GELVLDLGAGTGALTIPLAEAGAR-VVAVEADPVWAEKLAGRLAGSSLTVEVVAGDILAV 74

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
                   S P R+ AN P+ + T LL   +      P+   L L
Sbjct: 75  PLP-----SEPFRVAANPPFGVTTALLRRLLDQPERGPYQADLLL 114


>gi|71411035|ref|XP_807784.1| rRNA dimethyltransferase [Trypanosoma cruzi strain CL Brener]
 gi|70871858|gb|EAN85933.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi]
          Length = 482

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 13/170 (7%)

Query: 117 SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           + + ++ANLP+++ T LL  +        + +      L +  QKE+ ERI A   S H+
Sbjct: 281 AKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEIAERIIAPAGSIHF 340

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF- 230
            RLSVL        +        ++P  +V   ++   P   P+   +++   I      
Sbjct: 341 SRLSVLCQCFFHVQVRQTFREMTYYPKTEVLGAMLTLQPRSVPLVPGMDAATLIHFTDLL 400

Query: 231 ---GKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
              G+R  T+ ++L +       + +L +  ++  L   +L+ E+ C++ 
Sbjct: 401 MKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEICKLA 450



 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGP 58
           K+  LK +   +K+    Y+    Q F+L+L     I+  ++ ++       ++E+G G 
Sbjct: 70  KAEGLKHL---FKVPHAGYLAKYDQRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGT 126

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G LT+ LLT     V+ IE D++F   L+ I      +   +  D L+V+
Sbjct: 127 GALTRSLLTRPCVAVLGIEADERFNAHLEQIRQYTDGKFHWVNADVLRVN 176


>gi|307091910|gb|ADN28290.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 136

 Score = 40.8 bits (94), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 21/121 (17%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDIS 90
           D N L +I  ++       V+EIG G G LT++L    A KV+ IEKD++    L K   
Sbjct: 2   DGNQLCRIIAAAELTGSDKVLEIGPGLGALTELLWA-QAGKVLAIEKDRRLIEFLQKRFG 60

Query: 91  SQH-----------------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           S+                  PN  +++ DDALK   ++     S  +++ANLPY++ + +
Sbjct: 61  SEFRLQPVGHTRAEPPKGGTPN-FQLLHDDALKF-LKREQRDWSDWKLVANLPYSVASPI 118

Query: 134 L 134
           L
Sbjct: 119 L 119


>gi|71400767|ref|XP_803154.1| rRNA dimethyltransferase [Trypanosoma cruzi strain CL Brener]
 gi|70865852|gb|EAN81708.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi]
          Length = 482

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 13/170 (7%)

Query: 117 SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           + + ++ANLP+++ T LL  +        + +      L +  QKE+ ERI A   S H+
Sbjct: 281 AKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEIAERIIAPAGSIHF 340

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF- 230
            RLSVL        +        ++P  +V   ++   P   P+   +++   I      
Sbjct: 341 SRLSVLCQCFFHVQVRQTFREMTYYPKTEVLGAMLTLQPRSVPLVPGMDAATLIHFTDVL 400

Query: 231 ---GKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
              G+R  T+ ++L +       + +L +  ++  L   +L+ E+ C++ 
Sbjct: 401 MKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEICKLA 450



 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMG---QNFLLDL----NILKKIAESSGSLDGITVIEIGAGP 58
           K+  LK +   +K+    Y+    Q F+L+L     I+  ++ ++       ++E+G G 
Sbjct: 70  KAEGLKHL---FKVPHAGYLAKYDQRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGT 126

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G LT+ LLT     V+ IE D++F   L+ I      +   +  D L+V+
Sbjct: 127 GALTRSLLTRPCVAVLGIEADERFNAHLEQIRQYTDGKFHWVNADVLRVN 176


>gi|146271005|gb|ABQ17973.1| ribosomal methylase [Streptococcus uberis]
 gi|146285379|gb|ABQ18265.1| ribosomal methylase [Streptococcus uberis]
          Length = 174

 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 21/167 (12%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDF 109
           EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+  F
Sbjct: 1   EIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQFQF 55

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
                     +I+ N+PY++ T++    I    +      + L+ ++   +R      + 
Sbjct: 56  PN----KQRYKIVGNIPYHLSTQI----IKKVVFESRASDIYLIVEEGFYKRTLDIHRT- 106

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
               L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 107 ----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 149


>gi|229820415|ref|YP_002881941.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae
           DSM 12333]
 gi|229566328|gb|ACQ80179.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae
           DSM 12333]
          Length = 196

 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           F L  +    + + +G   G TV+++GAG G LT  L+  GAR VI +E+       L++
Sbjct: 13  FRLSPDWASTLVDRAGVEHGDTVLDLGAGAGALTGPLVDRGAR-VIALERHAGRVQRLRE 71

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                  R +      ++ D       + P R++AN P+++   ++ + + A
Sbjct: 72  -------RFDGRSVSVVEADIRDLRLPARPFRVVANPPFHLARPIVADLLGA 116


>gi|206560044|ref|YP_002230808.1| putative methyltransferase [Burkholderia cenocepacia J2315]
 gi|198036085|emb|CAR51980.1| putative methyltransferase [Burkholderia cenocepacia J2315]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           DG +VIE+GAG G  T+ LL  G  + +++++E D  F   L+    Q P  L ++Q DA
Sbjct: 41  DGASVIELGAGTGVFTRALLARGVASDRLVLVEADPAFANALRH---QFPA-LRVMQMDA 96

Query: 105 LKVDFE-KFFNISSPIRIIANLP 126
            ++     FF       I++ LP
Sbjct: 97  AQLGMTGDFFGGERAHAIVSGLP 119


>gi|307091982|gb|ADN28326.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +DLN++  +  S+       V+EIG G G+LT  L  L A  V+ +E D  F  + K+  
Sbjct: 1   IDLNLVDFVVRSAELDRSDLVLEIGTGTGSLTAHLARL-AGSVLSVEIDPSFHQLAKETI 59

Query: 91  SQHPNRLEIIQDDALK----------VDFEKFFNISSP--IRIIANLPYNIGTRLLFNWI 138
            +  + + +I  D L+              +  +   P  ++++ANLPY + T ++ N +
Sbjct: 60  GE-TSHVRLIHADVLENKNHLNPEVLTALREMMDTYQPQRLKLVANLPYAVATPVIANLL 118

Query: 139 SAD 141
             D
Sbjct: 119 MTD 121


>gi|149513367|ref|XP_001516033.1| PREDICTED: similar to transcription factor b1, partial
           [Ornithorhynchus anatinus]
          Length = 87

 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 14/86 (16%)

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFF--------NISSP-IRIIANLPYNIGTRLLFNW-- 137
           +S   P +L I+  D L  + EK F        +   P I II NLP+++ T L+  W  
Sbjct: 2   LSEAAPGKLRIVHGDVLTFNVEKAFPRSLRREWDADPPNIHIIGNLPFSVSTPLIIKWLE 61

Query: 138 -ISADTWPPFW--ESLTLLFQKEVGE 160
            IS    P  +    +TL FQKEV E
Sbjct: 62  NISRKDGPFIYGRTQMTLTFQKEVAE 87


>gi|14591689|ref|NP_143777.1| hypothetical protein PH1948 [Pyrococcus horikoshii OT3]
 gi|3258392|dbj|BAA31075.1| 207aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 207

 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           +A S G ++G  V ++GAG G L+   L LGA++VI +E D++   +L +   +   + +
Sbjct: 41  LAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFK 100

Query: 99  IIQDDA 104
           +   D 
Sbjct: 101 VFIGDV 106


>gi|85543921|pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
           Ph1948 From Pyrococcus Horikoshii
 gi|85543922|pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
           Ph1948 From Pyrococcus Horikoshii
 gi|85543923|pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
           Ph1948 From Pyrococcus Horikoshii
 gi|85543924|pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
           Ph1948 From Pyrococcus Horikoshii
          Length = 207

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           +A S G ++G  V ++GAG G L+   L LGA++VI +E D++   +L +   +   + +
Sbjct: 41  LAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFK 100

Query: 99  IIQDD 103
           +   D
Sbjct: 101 VFIGD 105


>gi|148704851|gb|EDL36798.1| mCG124508 [Mus musculus]
          Length = 398

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 24/124 (19%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           N+++ + E       I ++E   GPG LT  LL  GAR V+  E ++ F P L+ +    
Sbjct: 84  NLVRDLLEHQNPSRQI-ILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRNM 141

Query: 94  PNRLEIIQDDALKVD----------------FEKF------FNISSPIRIIANLPYNIGT 131
              L+++  D  K+D                F+        ++   PI++   LPY    
Sbjct: 142 DGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHER 201

Query: 132 RLLF 135
           R+L+
Sbjct: 202 RILW 205


>gi|307091860|gb|ADN28265.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L++I + +      +V+EIG G G LT++L+      V+ IE D++    L+  S 
Sbjct: 2   DANQLRRIVDLARLNPDDSVLEIGPGLGPLTELLVE-KVGHVLAIELDRRLVEFLE--SH 58

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
               +L+I+  D L    +K  + S+  +++ANLPY++ + +L     +   P
Sbjct: 59  LQSPKLKILHGDGLGYVRDKTRDWSN-WKLVANLPYSVASPILVELAESPNAP 110


>gi|193871|gb|AAA37817.1| house-keeping protein [Mus musculus]
          Length = 396

 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 23/107 (21%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-- 108
           ++E   GPG LT  LL  GAR V+  E ++ F P L+ +       L+++  D  K+D  
Sbjct: 98  ILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRNMDGELQVVHCDFFKMDPR 156

Query: 109 --------------FEKF------FNISSPIRIIANLPYNIGTRLLF 135
                         F+        ++   PI++   LPY    R+L+
Sbjct: 157 YQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHERRILW 203


>gi|26354937|dbj|BAC41095.1| unnamed protein product [Mus musculus]
          Length = 396

 Score = 40.0 bits (92), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 24/124 (19%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           N+++ + E       I ++E   GPG LT  LL  GAR V+  E ++ F P L+ +    
Sbjct: 82  NLVRDLLEHQNPSRQI-ILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRNM 139

Query: 94  PNRLEIIQDDALKVD----------------FEKF------FNISSPIRIIANLPYNIGT 131
              L+++  D  K+D                F+        ++   PI++   LPY    
Sbjct: 140 DGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHER 199

Query: 132 RLLF 135
           R+L+
Sbjct: 200 RILW 203


>gi|84490373|ref|NP_032275.2| dimethyladenosine transferase 2, mitochondrial [Mus musculus]
 gi|123796604|sp|Q3TL26|TFB2M_MOUSE RecName: Full=Dimethyladenosine transferase 2, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 2;
           AltName: Full=Mitochondrial transcription factor B2;
           Short=mTFB2M; Short=mtTFB2; AltName:
           Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase 2; Flags: Precursor
 gi|74138927|dbj|BAE27262.1| unnamed protein product [Mus musculus]
 gi|74139560|dbj|BAE40917.1| unnamed protein product [Mus musculus]
 gi|74177744|dbj|BAE38967.1| unnamed protein product [Mus musculus]
 gi|74204361|dbj|BAE39934.1| unnamed protein product [Mus musculus]
 gi|74223284|dbj|BAE40774.1| unnamed protein product [Mus musculus]
 gi|148681221|gb|EDL13168.1| transcription factor B2, mitochondrial [Mus musculus]
 gi|187953023|gb|AAI38837.1| Transcription factor B2, mitochondrial [Mus musculus]
 gi|187954085|gb|AAI38838.1| Transcription factor B2, mitochondrial [Mus musculus]
          Length = 396

 Score = 40.0 bits (92), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 24/124 (19%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           N+++ + E       I ++E   GPG LT  LL  GAR V+  E ++ F P L+ +    
Sbjct: 82  NLVRDLLEHQNPSRQI-ILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRNM 139

Query: 94  PNRLEIIQDDALKVD----------------FEKF------FNISSPIRIIANLPYNIGT 131
              L+++  D  K+D                F+        ++   PI++   LPY    
Sbjct: 140 DGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHER 199

Query: 132 RLLF 135
           R+L+
Sbjct: 200 RILW 203


>gi|297203193|ref|ZP_06920590.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083]
 gi|197717356|gb|EDY61390.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083]
          Length = 258

 Score = 40.0 bits (92), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 21/198 (10%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++E+GAG G LT+ LL    R ++  E D++  P+L    S  P  + +I  D L     
Sbjct: 38  LLEVGAGKGALTE-LLAPRCRTLLAYEIDERLVPVLAARFSGTPQ-VRVIGGDFLAARPP 95

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
           +     +   +  N+P++  T  + +W       P     TLL Q E      A+K +  
Sbjct: 96  R-----TAFSVAGNVPFSR-TAAIVDWCLRA---PALTDATLLTQVEY-----ARKRTGD 141

Query: 171 YGRLSVLT--GW-RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKI 225
           YG  ++LT   W R +  +   +    F P P+V + ++       P+  P  L   + +
Sbjct: 142 YGSWTLLTVLNWPRYEWRLAGLVGRRSFRPVPRVDAGILRIERRGVPLLPPGALPGWRHL 201

Query: 226 TQEAFGKRRKTLRQSLKR 243
            +  F     +L  SL R
Sbjct: 202 VELGFSGVGGSLHASLCR 219


>gi|149641645|ref|XP_001513371.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 295

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           GPG LT+ LL  GAR V+ +E D  F P L+ + +    +LE++  D   +D
Sbjct: 7   GPGILTRALLQTGAR-VVALESDAAFLPHLQSLKNSLDGQLEVVHCDFFALD 57


>gi|159161741|gb|ABW95864.1| ErmB [uncultured bacterium]
          Length = 213

 Score = 40.0 bits (92), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           +L +I +     +  TV EIG   G+LT  L  + +++V  IE D   F    ++SS+  
Sbjct: 3   VLNQIIKQLNLKETDTVYEIGTSKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKL 57

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
               R+ +I  D L+  F          +I+ ++PY++ T++    I    +      + 
Sbjct: 58  KLNTRVTLIHQDILQFQFPN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIY 109

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L+ ++   +R      +     L +L   +     +  +    F P PKV S +I    H
Sbjct: 110 LIVEEGFYKRTLDIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 164

Query: 212 LNPIP 216
              +P
Sbjct: 165 TTDVP 169


>gi|114452118|gb|ABI75033.1| erythromycin resistance protein [uncultured bacterium]
          Length = 121

 Score = 40.0 bits (92), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 2   TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 56

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLL 134
             F          +I  N+PYN+ T+++
Sbjct: 57  FQFPN----KQRYKIFGNIPYNLSTKII 80


>gi|226876711|gb|ACO89576.1| Erm(41) [Mycobacterium abscessus]
          Length = 173

 Score = 40.0 bits (92), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 27/187 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  G   L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E    
Sbjct: 7   RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVE---- 60

Query: 82  FFPILKDISSQHPNRLEIIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L    ++H  R    ++D    + D   F     P R++A+ PY + + L+ + ++
Sbjct: 61  ----LHPGRARH-LRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLT 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            ++         LL    V +R    K++    + +++  W  +A +    S   F   P
Sbjct: 116 PES--------RLLAADLVLQRGAVHKHA----KRALVRHWTLRAGITLPRS--AFHHPP 161

Query: 200 KVTSTVI 206
           +V S+V+
Sbjct: 162 QVDSSVL 168


>gi|170780459|ref|YP_001716198.1| hypothetical protein pRW35_1 [Streptococcus pyogenes]
 gi|158523369|gb|ABW70817.1| ermT [Streptococcus pyogenes]
          Length = 242

 Score = 40.0 bits (92), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 24/250 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + +I  +        +IEIG+G G+ T   L      V  IE D +   I
Sbjct: 9   SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFT-FELAKRCNYVTAIEIDPKLCRI 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            K+   ++    ++I  D L+  F K    +   +I  N+PYNI T ++   +   T   
Sbjct: 68  TKNKLIEN---FQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 120

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +    L+ +    +R+     S     L++        +++  I    F P P+V S++
Sbjct: 121 SY----LIVEYGFAKRLLNTNRS-----LALFLMTEVDISILSKIPREYFHPKPRVNSSL 171

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA-ENL 264
           I    H  P    L+  K+          K + +   +L  +N  +QA     +    N+
Sbjct: 172 IVLKRH--PSKISLKDRKQYENFVM----KWVNKEYIKLFSKNQFYQALKYARIDDLNNI 225

Query: 265 SIEDFCRITN 274
           S E F  + N
Sbjct: 226 SFEQFLSLFN 235


>gi|195109498|ref|XP_001999321.1| GI23134 [Drosophila mojavensis]
 gi|193915915|gb|EDW14782.1| GI23134 [Drosophila mojavensis]
          Length = 471

 Score = 40.0 bits (92), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           TV+E+  GPG+ T+ LL      RK+I++E  + F P L+++ + +P R+++   D
Sbjct: 85  TVMELNPGPGHFTRHLLDRETQFRKIILMESMEYFMPRLQELHALYPERVKVRYGD 140


>gi|197112113|gb|ACH43059.1| ribosome methyltransferase [Mycobacterium abscessus]
          Length = 173

 Score = 40.0 bits (92), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 27/187 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  G   L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E    
Sbjct: 7   RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVE---- 60

Query: 82  FFPILKDISSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L    ++H  R    ++D    + D   F     P R++A+ PY + + L+ + ++
Sbjct: 61  ----LHPGRARH-LRSRFAEEDVRIAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLT 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            ++         LL    V +R    K++    + +++  W  +A +    S   F   P
Sbjct: 116 PES--------RLLAADLVLQRGAVHKHA----KRALVRHWTLRAGITLPRS--AFHHPP 161

Query: 200 KVTSTVI 206
           +V S+V+
Sbjct: 162 QVDSSVL 168


>gi|226876715|gb|ACO89578.1| Erm(41) [Mycobacterium abscessus]
          Length = 173

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 26/171 (15%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           +I   SG   G  V+++GAG G LT  L+  GAR V+ +E        L    ++H  R 
Sbjct: 22  RIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVE--------LHPGRARH-LRS 71

Query: 98  EIIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
              ++D    + D   F     P R++A+ PY + + L+ + ++ ++         LL  
Sbjct: 72  RFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPES--------RLLAA 123

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
             V +R    K++    + +++  W  +A +    S   F   P+V S+V+
Sbjct: 124 DLVLQRGAVHKHA----KRALVRHWTLRAGITLPRS--AFHHPPQVDSSVL 168


>gi|226876713|gb|ACO89577.1| Erm(41) [Mycobacterium abscessus]
          Length = 173

 Score = 39.7 bits (91), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 26/171 (15%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           +I   SG   G  V+++GAG G LT  L+  GAR V+ +E        L    ++H  R 
Sbjct: 22  RIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVE--------LHPGRARH-LRS 71

Query: 98  EIIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
              ++D    + D   F     P R++A+ PY + + L+ + ++ ++         LL  
Sbjct: 72  RFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPES--------RLLAA 123

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
             V +R    K++    + +++  W  +A +    S   F   P+V S+V+
Sbjct: 124 DLVLQRGAVHKHA----KRALVRHWTLRAGITLPRS--AFHHPPQVDSSVL 168


>gi|229822130|ref|YP_002883656.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
 gi|229568043|gb|ACQ81894.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
          Length = 266

 Score = 39.7 bits (91), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          +  ++ E  G   G    EIG GPG  T  LL LGA  ++ +E D +    L++     P
Sbjct: 33 VYDELVERCGLRPGTATFEIGPGPGTATGRLLELGADPLVAVEPDARLATFLRERFPDAP 92


>gi|46445793|ref|YP_007158.1| hypothetical protein pc0159 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399434|emb|CAF22883.1| hypothetical protein pc0159 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 392

 Score = 39.7 bits (91), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI----IQDDA 104
           + V++IG+GPG  +   L  GAR+VI ++K+Q    +  D+  ++   L I    +++D 
Sbjct: 99  VRVLDIGSGPGAFSFAALHHGAREVIALDKNQTALQLAADVCGRYGYPLTIRRHDLKNDD 158

Query: 105 LKVD 108
           L VD
Sbjct: 159 LPVD 162


>gi|207108392|ref|ZP_03242554.1| dimethyladenosine transferase [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 78

 Score = 39.7 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
          ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL
Sbjct: 2  VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLL 49


>gi|325569975|ref|ZP_08145934.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156942|gb|EGC69111.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 12/91 (13%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            +L +IAE +G     +V+E G+G GNLTQ LLT G + V+ IE      P ++ I+   
Sbjct: 36  QLLAEIAEKAGR----SVVEFGSGTGNLTQALLTQG-KNVLAIEPS----PEMRRIAKSK 86

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           P+  ++   D    D E F  I+  I  I +
Sbjct: 87  PSLSKVTFVDG---DMEVFPEITDVIDTIVS 114


>gi|298246976|ref|ZP_06970781.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297549635|gb|EFH83501.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score = 39.3 bits (90), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 12/102 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-----VIVIEKDQQFFPILK-DI 89
           L++I E +G   G+ V+EIG GPG+ T +L    A +     V  +E   +    L+  +
Sbjct: 81  LEQIVERAGVTPGMRVLEIGPGPGHFTTLLARRVAEQGKQGSVTCVELQPEMIARLRQQL 140

Query: 90  SSQHPNRLEIIQDDA-----LKVDFEKFFNISSPIRIIANLP 126
             +  N +EI+Q DA     L   F+  F +++ I  + ++P
Sbjct: 141 HREQVNNVEIVQGDAQQLPLLSASFDMVF-LATVIGEVPDMP 181


>gi|242398066|ref|YP_002993490.1| Predicted DNA methylase [Thermococcus sibiricus MM 739]
 gi|242264459|gb|ACS89141.1| Predicted DNA methylase [Thermococcus sibiricus MM 739]
          Length = 205

 Score = 39.3 bits (90), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
          +A S G ++G  + ++GAG G L+     +GA+KV  +EKD++   I K+
Sbjct: 39 LAHSMGDIEGKIIADLGAGTGVLSIGASLMGAKKVYAVEKDKKALEIAKE 88


>gi|260831178|ref|XP_002610536.1| hypothetical protein BRAFLDRAFT_65703 [Branchiostoma floridae]
 gi|229295903|gb|EEN66546.1| hypothetical protein BRAFLDRAFT_65703 [Branchiostoma floridae]
          Length = 448

 Score = 39.3 bits (90), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           K  +   ++LD  +   + +  G L  +   + E+  GPG +T+ LL  GA +++++E D
Sbjct: 113 KSRIKNKYILDPALAAVVVDHLGDLSENKQWIFELNPGPGVVTRELLAAGASRILILEND 172

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           + F P    ++            D + V +  FF I      +   P  I +  LFN I 
Sbjct: 173 RVFLPYSMALAKH--------VRDIVHVKYADFFRIDPMGDGVIKQP-AISSVELFNKIQ 223

Query: 140 ADTW 143
              W
Sbjct: 224 PAHW 227


>gi|146271003|gb|ABQ17972.1| ribosomal methylase [Streptococcus uberis]
          Length = 174

 Score = 38.9 bits (89), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 21/167 (12%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDF 109
           EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+  F
Sbjct: 1   EIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQFQF 55

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
                     +I+ ++PY++ T++    I    +      + L+ ++   +R      + 
Sbjct: 56  PN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIHRT- 106

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
               L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 107 ----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 149


>gi|114332454|ref|YP_748676.1| 3-demethylubiquinone-9 3-methyltransferase [Nitrosomonas eutropha
           C91]
 gi|114309468|gb|ABI60711.1| 3-demethylubiquinone-9 3-methyltransferase [Nitrosomonas eutropha
           C91]
          Length = 252

 Score = 38.9 bits (89), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-FPILKDI 89
           L LN + +IA     LDG TV+++G G G L++ +   GAR   +   D+      L  +
Sbjct: 57  LRLNYIDEIA----GLDGKTVVDVGCGGGILSESMAARGARVTGIDLSDKALKVAKLHLL 112

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            S H      I  +AL V+  + ++I + + ++ ++P
Sbjct: 113 ESGHQVDYRKITVEALAVELPQHYDIVTCMEMLEHVP 149


>gi|194742245|ref|XP_001953616.1| GF17852 [Drosophila ananassae]
 gi|190626653|gb|EDV42177.1| GF17852 [Drosophila ananassae]
          Length = 454

 Score = 38.9 bits (89), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           TV+E+  G G+ T+ LL      R++I++E    F P L+++ S +P R+++ Q D
Sbjct: 72  TVMELNPGTGHFTRHLLDRETQFRRIILLESMDHFMPRLQELHSLYPERVKVRQGD 127


>gi|307568926|emb|CBX23404.1| ErmF protein [Bacteroides fragilis]
          Length = 68

 Score = 38.9 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
          K +P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE
Sbjct: 4  KKLPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIE 62

Query: 78 KD 79
           D
Sbjct: 63 ND 64


>gi|146271001|gb|ABQ17971.1| ribosomal methylase [Streptococcus uberis]
          Length = 174

 Score = 38.9 bits (89), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 21/167 (12%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDF 109
           EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+  F
Sbjct: 1   EIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNIRVTLIHQDILQFQF 55

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
                     +I+ ++PY++ T++    I    +      + L+ ++   +R      + 
Sbjct: 56  PN----KQRYKIVGSIPYHLSTQI----IKKVVFESHASDIYLIVEEGFYKRTLDIHRT- 106

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
               L +L   +     +  +    F P PKV S +I    H   +P
Sbjct: 107 ----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVP 149


>gi|229077320|ref|ZP_04209997.1| Dimethyladenosine transferase [Bacillus cereus Rock4-2]
 gi|228705976|gb|EEL58287.1| Dimethyladenosine transferase [Bacillus cereus Rock4-2]
          Length = 106

 Score = 38.9 bits (89), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG----- 246
           VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L          
Sbjct: 7   VFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKD 66

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
               + +L + GI+   R E LSIE+F  ++N L
Sbjct: 67  KELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 100


>gi|330813693|ref|YP_004357932.1| peptidyl-tRNA hydrolase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486788|gb|AEA81193.1| peptidyl-tRNA hydrolase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 185

 Score = 38.9 bits (89), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILK---KIAESSGSLDGITVIEIGAGPG 59
           MNN    ++ I  +YKIIPK     +  LDL I K   K+  SSG  +GI  IE   GP 
Sbjct: 65  MNNSGTCIREIQDYYKIIPKNVFVFHDDLDLEIGKIRCKVGGSSGGHNGIKSIEDAIGP- 123

Query: 60  NLTQMLLTLG 69
           N  ++ + +G
Sbjct: 124 NFYRIRVGIG 133


>gi|224004112|ref|XP_002295707.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585739|gb|ACI64424.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF- 109
           V++IG G G LT+ L  LGA  V+ ++   +   + K  SS   +RLE   DD+      
Sbjct: 77  VLDIGCGGGLLTESLSRLGASLVVGVDASPKVVDVAKMHSSHEYSRLEHDVDDSTTNQHH 136

Query: 110 -EKFFNISSPIRIIANLP 126
             + F+I + + +I ++P
Sbjct: 137 DHELFDIVTALEVIEHVP 154


>gi|312100661|ref|XP_003149435.1| hypothetical protein LOAG_13883 [Loa loa]
 gi|307755400|gb|EFO14634.1| hypothetical protein LOAG_13883 [Loa loa]
          Length = 120

 Score = 38.9 bits (89), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I E S      TV E+G+G GNLT +L+   A+KVI  E D++    
Sbjct: 54  GQHILKNPGVVNAIVEKSAIKATDTVFEVGSGTGNLTVVLME-KAKKVIACEIDRRMIAE 112

Query: 86  LK 87
           LK
Sbjct: 113 LK 114


>gi|226304595|ref|YP_002764553.1| hypothetical protein RER_11060 [Rhodococcus erythropolis PR4]
 gi|226183710|dbj|BAH31814.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 270

 Score = 38.5 bits (88), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 15/110 (13%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLT 62
            +S  L +   H +  P  + G      + ++  + E  +  SLDG+TV+++G GPG   
Sbjct: 31  KRSFGLLSDFRHEQSAPDIFYGALARDSVELISDLHEGHTGRSLDGLTVLDVGGGPGYFA 90

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI---IQDDALKVDF 109
           ++    GAR          + P+  D S  H   L +   ++   L + F
Sbjct: 91  EVFQAAGAR----------YIPVEPDPSEMHAAGLTVGGAVRGSGLALPF 130


>gi|307091936|gb|ADN28303.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDAL 105
           G  V+++GAG G LT  L   GAR V+ +E D  +   L      ++    +E++  D L
Sbjct: 16  GELVLDLGAGTGALTIPLARAGAR-VVAVEADPVWAEKLSGRLAGARLSGTVELVVGDIL 74

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
           ++        S P R+++N P+ + T LL   +      P+   L L
Sbjct: 75  ELSLP-----SEPYRVVSNPPFGVTTALLRRLLEPPERGPYRADLLL 116


>gi|315453006|ref|YP_004073276.1| N-6 adenine methyltransferase [Helicobacter felis ATCC 49179]
 gi|315132058|emb|CBY82686.1| N-6 adenine methyltransferase [Helicobacter felis ATCC 49179]
          Length = 194

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 18/136 (13%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---- 88
           LN+L+ I  +S        +E+  G G++    L+ GA++ +  E+D++ F +L++    
Sbjct: 41  LNVLRPIIATSA------FVEVFGGSGSVGLEALSCGAQEALFFEQDREVFTLLQENIRL 94

Query: 89  --ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL--PYNIGTRLLFNWISADTWP 144
                + P + + IQ D+LK+   ++ +  S  +II  L  P+N+  +  F  +     P
Sbjct: 95  FQKRLKQPLKAQAIQGDSLKL-LPQYLHSLSAAQIILYLDPPFNMPLQACFVCLENVQIP 153

Query: 145 PFWESLTLLFQKEVGE 160
           P   S  ++F+ +  E
Sbjct: 154 P---SSVIIFEHQSQE 166


>gi|227827664|ref|YP_002829444.1| dimethyladenosine transferase [Sulfolobus islandicus M.14.25]
 gi|229584868|ref|YP_002843370.1| dimethyladenosine transferase [Sulfolobus islandicus M.16.27]
 gi|238619835|ref|YP_002914661.1| dimethyladenosine transferase [Sulfolobus islandicus M.16.4]
 gi|227459460|gb|ACP38146.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           M.14.25]
 gi|228019918|gb|ACP55325.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           M.16.27]
 gi|238380905|gb|ACR41993.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           M.16.4]
 gi|323474722|gb|ADX85328.1| rRNA adenine methylase transferase [Sulfolobus islandicus REY15A]
          Length = 198

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 35/161 (21%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G GN+T+ L        I IE D++    LKD +        ++  DA  +   
Sbjct: 8   ILEIGCGKGNITKFL-----EPDICIELDEKMTDYLKDYN--------LVIADARYL--- 51

Query: 111 KFFNISSPI---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
                  PI   +++++LPY I +      +  D        L L+ QK+  ++I    N
Sbjct: 52  -------PILRGQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKIL---N 97

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
            P Y  +S L  +         I P  F P PKV S +  F
Sbjct: 98  DPTY--ISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVF 136


>gi|315426853|dbj|BAJ48474.1| dimethyladenosine rRNA methyltransferase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 248

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 12/109 (11%)

Query: 23  KYMGQNFLLDLNILKK--IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           + M Q+FL+D  ++    +A   GS D   V+++GAG G L        ARKV  +E+D 
Sbjct: 5   RLMDQHFLVDRAVVMHLVVAAELGSED--VVLDVGAGTGVLAFEAAKF-ARKVYAVERDP 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             +  L + + ++ N +E ++ + L++    +       +I+AN P+++
Sbjct: 62  ILYKTLSEKAKEYGN-VEPVRGNILRLRLPAY------TKIVANPPFSL 103


>gi|229494375|ref|ZP_04388138.1| methyltransferase type 11 [Rhodococcus erythropolis SK121]
 gi|229318737|gb|EEN84595.1| methyltransferase type 11 [Rhodococcus erythropolis SK121]
          Length = 256

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 15/110 (13%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLT 62
            +S  L +   H +  P  + G      + ++  + E  +  SLDG+TV+++G GPG   
Sbjct: 17  KRSFGLLSDFRHEQSAPDIFYGALARDSVELISDLHEGHTGRSLDGLTVLDVGGGPGYFA 76

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI---IQDDALKVDF 109
           ++    GAR          + P+  D S  H   L +   ++   L + F
Sbjct: 77  EVFQAAGAR----------YIPVEPDPSEMHAAGLTVGGAVRGSGLALPF 116


>gi|291190262|ref|NP_001167350.1| phosphoethanolamine N-methyltransferase 3 [Salmo salar]
 gi|223649374|gb|ACN11445.1| phosphoethanolamine N-methyltransferase 3 [Salmo salar]
          Length = 495

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 88/211 (41%), Gaps = 28/211 (13%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           SL G  V+E+GAG G  T  LLTL A  V  ++  + F    +  +S + N    +Q D 
Sbjct: 48  SLSGQRVLELGAGIGRYTSHLLTL-ASHVTAVDFMESFVEKNRQDNSHYSN-ASFLQADV 105

Query: 105 LKVDFEK-FFNI---SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
            K+DF K  F+I   +  +  +++      T  +  W+S   +  F ES    +Q    +
Sbjct: 106 TKLDFPKNSFDIIFSNWLLMYLSDEELTSLTERMLGWLSPGGYLFFRESCN--YQSGDFK 163

Query: 161 RI---TAQKNSPHYGRLSVLT-----GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           R    T  ++S HY  L   T         K    FDI  +      K   T I    + 
Sbjct: 164 RTFNPTHYRSSAHYSHLMTTTLREESEGAEKQVFGFDIVLN------KTVQTYIKMKKNQ 217

Query: 213 NPIPCCLESLKKIT--QEAFGKRRKTLRQSL 241
           N +   LE + + T  QE F    +T +Q L
Sbjct: 218 NQVCWLLEKVGRDTACQEGF----RTFQQFL 244


>gi|170571310|ref|XP_001891678.1| hypothetical protein [Brugia malayi]
 gi|158603678|gb|EDP39514.1| conserved hypothetical protein [Brugia malayi]
          Length = 219

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           IL  +AE  G +DG TV ++G GPG L    + LGA   + IE D++   I ++ + +  
Sbjct: 36  ILNAVAEE-GCMDGCTVADLGCGPGILLLGAVKLGASYGLGIEIDEEAINICRN-NIERC 93

Query: 95  NRLEIIQDDALKVDFEKFFNISSPI--RIIANLPY----NIGTRLLF 135
           +   ++  D + +D  K  +   PI   +I N P+    N G  L F
Sbjct: 94  DLGNVV--DVICLDVTKNISALKPIFDTVIMNPPFGTKNNAGMDLRF 138


>gi|189424829|ref|YP_001952006.1| methyltransferase [Geobacter lovleyi SZ]
 gi|189421088|gb|ACD95486.1| methyltransferase [Geobacter lovleyi SZ]
          Length = 189

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRL 97
           +S+G LDG+ V+++ AG G+L    L+ GA +V  IEKD+     L+ ++  H    +R 
Sbjct: 37  DSAGRLDGMRVLDLFAGSGSLGIEALSRGAEQVTFIEKDRHALESLR-LNLGHTGFSDRA 95

Query: 98  EIIQDDALKV 107
           E++  D L+ 
Sbjct: 96  EVLPFDCLQA 105


>gi|39938792|ref|NP_950558.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M]
 gi|39721901|dbj|BAD04391.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M]
          Length = 455

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           + +G   G  ++E+GAG GN+T+ L+   GA+ VI +E D++   +L++   + P  L +
Sbjct: 291 QDTGLKTGEKILELGAGSGNVTKYLVQKFGAQNVITLEYDKELCNVLRN---KFPG-LTV 346

Query: 100 IQDDA 104
           I+ DA
Sbjct: 347 IEGDA 351


>gi|198431339|ref|XP_002123350.1| PREDICTED: similar to LOC495955 protein [Ciona intestinalis]
          Length = 338

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 35/172 (20%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQ----NFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           N    ++  IL    +IPK Y G        LDL    +  E+   L G  V+E+G G G
Sbjct: 88  NLADKAIPNILDTSDLIPKVYEGGLKLWESCLDLVHFLEKQENKELLQGKHVMEVGCGFG 147

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPI----------------LKDISSQHPNRLEIIQDD 103
               + +  GA+KV+   +D   F I                + D ++  P RL+   D+
Sbjct: 148 LPGILAVKCGAKKVVF--QDYNHFVIFNATGPSVFLNECKTKVSDDATPEPKRLKTEDDN 205

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            +   FEKF            L  +I T   +++IS D W    +++ + F+
Sbjct: 206 DVMDSFEKF------------LETDIKTECQYSFISGD-WGEVAQNVDIKFE 244


>gi|114452124|gb|ABI75036.1| erythromycin resistance protein [uncultured bacterium]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           +IEIG+G G+ T   L      V  IE D +   I K+   ++ N  ++I  D L+  F 
Sbjct: 17  IIEIGSGKGHFT-FELAKRCNYVTAIEIDPKLCRITKNKLIEYEN-FQVINKDILQFKFP 74

Query: 111 KFFNISSPIRIIANLPYNIGTRLL 134
           K    +   +I  N+PYNI T ++
Sbjct: 75  K----NKSYKIFGNIPYNISTDII 94


>gi|307091898|gb|ADN28284.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  ++  + E     DG  ++E+GAG G LT  L  LG R +  IE D +    L   +S
Sbjct: 2   DRGVVDTLVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRTS 59

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
                        +  DF ++    +P  I+ NLPY++ T +L   +    W
Sbjct: 60  A--------SSRVVDADFLQYRLPHAPHVIVGNLPYHLTTAMLRRLLHGPGW 103


>gi|268553797|ref|XP_002634885.1| Hypothetical protein CBG10553 [Caenorhabditis briggsae]
          Length = 251

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y    +K++G++ L+   I K I      L+G  V+++G G G+ +   L  GA +V+ I
Sbjct: 9   YTEAQQKWLGRDHLITPTIKKAIGNV---LEGKKVLDVGCGNGHYSFDFLQWGADEVVGI 65

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANL 125
           +   +   I +D   + P   +I   ++   DF  +K F++++   ++  L
Sbjct: 66  DNSPEMIQICQDSQKKLPESSKIDFHESNITDFSLQKHFDVATAFFVLQFL 116


>gi|315425087|dbj|BAJ46759.1| dimethyladenosine transferase [Candidatus Caldiarchaeum
           subterraneum]
 gi|315428047|dbj|BAJ49635.1| dimethyladenosine rRNA methyltransferase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 242

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 25  MGQNFLLDLNILKK--IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           M Q+FL+D  ++    +A   GS D   V+++GAG G L        ARKV  +E+D   
Sbjct: 1   MDQHFLVDRAVVMHLVVAAELGSED--VVLDVGAGTGVLAFEAAKF-ARKVYAVERDPIL 57

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +  L + + ++ N +E ++ + L++    +       +I+AN P+++
Sbjct: 58  YKTLSEKAKEYGN-VEPVRGNILRLRLPAY------TKIVANPPFSL 97


>gi|307091912|gb|ADN28291.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  ++  + E     DG  ++E+GAG G LT  L  LG R +  IE D +    L   +S
Sbjct: 2   DRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLGKRTS 59

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
                        +  DF ++    +P  I+ NLP+++ T +L   +    W
Sbjct: 60  ASTR--------VVDADFLQYRLPRAPHVIVGNLPFHLTTAMLRRILHGPAW 103


>gi|325299742|ref|YP_004259659.1| hypothetical protein Bacsa_2652 [Bacteroides salanitronis DSM
          18170]
 gi|324319295|gb|ADY37186.1| Conserved hypothetical protein CHP00095 [Bacteroides salanitronis
          DSM 18170]
          Length = 177

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
          DGIT +++ AG G+++  L++ G  KV+ +EKD Q +  +
Sbjct: 44 DGITALDLFAGTGSISLELISRGCEKVVSVEKDPQHYAFI 83


>gi|319784639|ref|YP_004144115.1| methyltransferase type 11 [Mesorhizobium ciceri biovar biserrulae
          WSM1271]
 gi|317170527|gb|ADV14065.1| Methyltransferase type 11 [Mesorhizobium ciceri biovar biserrulae
          WSM1271]
          Length = 294

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          V+EIGAGPG++ + L+ L   +V  +E D    PILK
Sbjct: 37 VLEIGAGPGSIAKPLIALNGCRVTALEYDPNCIPILK 73


>gi|307092032|gb|ADN28351.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 130

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 13/114 (11%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D N L KI  ++       V+EIG G G LT++LL   A +V  IE D++    L +   
Sbjct: 2   DQNQLHKIVAAAEIGPDDKVLEIGPGLGPLTELLLE-KAGEVFAIETDERLVDFLCERFG 60

Query: 92  QHPNR-----------LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              N            L ++ DDAL    ++     S  +++ANLPY++ + +L
Sbjct: 61  LRANESAGAKETPAHNLCLLHDDALAF-IKRERRDWSDWKLVANLPYSVASPIL 113


>gi|307091954|gb|ADN28312.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307091968|gb|ADN28319.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307091970|gb|ADN28320.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDAL 105
           G  V+++GAG G LT  L   GAR V+ +E D  +   L      ++    +E++  D L
Sbjct: 16  GELVLDLGAGTGALTIPLARAGAR-VVAVEADPVWAEKLSGRLAGARLSGTVELVVRDIL 74

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
           ++        S P R+++N P+ + T L+   +      P+   L L
Sbjct: 75  ELSLP-----SEPYRVVSNPPFGVTTALMRRLLEPSERGPYRADLLL 116


>gi|307091986|gb|ADN28328.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 108

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           D   ++E+GAG G +T  L   G R V  +E D      L+    +HP R  ++  D L 
Sbjct: 16  DSAPILELGAGDGAVTWALFQAG-RAVTAVELDSNRVAALR---RRHP-RAIVVAGDMLD 70

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           +  E   +      +++N+P+ I T LL + +    W
Sbjct: 71  IRLESDHH------VVSNVPFGITTPLLRHLLPQQHW 101


>gi|41615127|ref|NP_963625.1| hypothetical protein NEQ337 [Nanoarchaeum equitans Kin4-M]
 gi|40068851|gb|AAR39186.1| NEQ337 [Nanoarchaeum equitans Kin4-M]
          Length = 193

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 50 TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKD 88
          T++EIG G G+LT  L  L    K+IV EKD ++ PILK+
Sbjct: 42 TIVEIGPGSGSLTMYLAYLVYPNKIIVYEKDDRWIPILKE 81


>gi|298249778|ref|ZP_06973582.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297547782|gb|EFH81649.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARK----VIVIEKDQQFFPILKD-IS 90
           + I E +G   G+ V+EIG GPG  T +L   + A K    V  +E   +   +L+  + 
Sbjct: 62  EHIVERAGVALGMRVLEIGPGPGLFTTVLARRVAAGKSSGSVTCVEVQSKMIELLRQRLE 121

Query: 91  SQHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNI 129
            +    +EIIQ D   +   E  F++   + ++  LPY +
Sbjct: 122 REEVGNVEIIQADGCHMPLPEGSFDMIFLVTVVGELPYPV 161


>gi|312068607|ref|XP_003137293.1| hypothetical protein LOAG_01707 [Loa loa]
 gi|307767542|gb|EFO26776.1| hypothetical protein LOAG_01707 [Loa loa]
          Length = 219

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
          IL  IAE  G +DG TV ++G GPG L    + LGA   + +E D++   I ++
Sbjct: 36 ILNAIAEE-GYIDGCTVADLGCGPGILLLGAVKLGASYGLGVEIDEEVIKICQN 88


>gi|325688980|gb|EGD30988.1| methyltransferase domain protein [Streptococcus sanguinis SK115]
          Length = 228

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 13/117 (11%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQ-NFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M M N +     + S Y  +     G+ ++LLD      + +S      ++ ++IG G G
Sbjct: 1   MFMENITEQFNAVASEYDWVTTLLEGKPDYLLD-----NLPDSR-----VSALDIGCGGG 50

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNI 115
           N T + L+   + V  I+    F  I KD +  +    +E++QDD L   FEK F+ 
Sbjct: 51  N-TCIFLSSYFQHVTGIDLSADFLQIAKDKVEKEDLQNVELLQDDFLTAVFEKQFDF 106


>gi|293333490|ref|NP_001168088.1| hypothetical protein LOC100381822 [Zea mays]
 gi|223945939|gb|ACN27053.1| unknown [Zea mays]
          Length = 170

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 4/100 (4%)

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNS 168
           EK+       ++ +NLP+N+ T ++   +        +  + L+ Q E   R+  A   S
Sbjct: 3   EKYGATKKLAKVASNLPFNVSTEVVKLLLPMGD---VFSVVVLMLQDETAVRLADASIQS 59

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
           P Y  ++V   + ++    F +    FFP PKV   VI F
Sbjct: 60  PEYRSINVFVDFYSEPEYKFRVDRENFFPRPKVDGAVISF 99


>gi|307091994|gb|ADN28332.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 108

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           D   ++E+GAG G +T  LL    R V  +E D      L+    +HP R  ++  D L 
Sbjct: 16  DSAPILELGAGDGAVTWALLQ-ADRAVTAVELDSNRVAALR---RRHP-RAMVVAGDMLD 70

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           +  E   +      +++N+P+ I T LL + +    W
Sbjct: 71  IRLESNHH------VVSNVPFGITTPLLRHLLPQQHW 101


>gi|310814902|ref|YP_003962866.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare
          Y25]
 gi|308753637|gb|ADO41566.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare
          Y25]
          Length = 328

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
          G G  T+ LL  GA KVI I++D   FP+  D  +  P+R+++
Sbjct: 32 GAGGYTRDLLAAGADKVIGIDRDPSVFPLSADWRAAMPDRVDL 74


>gi|77458233|ref|YP_347738.1| hypothetical protein Pfl01_2006 [Pseudomonas fluorescens Pf0-1]
 gi|77382236|gb|ABA73749.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 268

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           + L+ + E  G +DG  V+++    G  +  L +LGAR V+ I++   F    ++++ + 
Sbjct: 47  DTLRGLLEQVG-VDGKDVVQLCCNNGRESLSLFSLGARSVVGIDQSSAFLEQARELNKRS 105

Query: 94  PNRLEIIQDD 103
           P+  E I+ D
Sbjct: 106 PHNAEFIEAD 115


>gi|251781572|ref|YP_002995873.1| adenine-specific methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390200|dbj|BAH80659.1| adenine-specific methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|323126365|gb|ADX23662.1| adenine-specific methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 317

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQ 92
           IL  + E     D + V+EIG+G GNL Q LL   ++K+  + IE D     +   I+  
Sbjct: 97  ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKKLDYVGIELDDLLIDLSASIAEV 156

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    IQ+DA++    K  ++     +I++LP
Sbjct: 157 MDSSARFIQEDAVRPQLLKESDV-----VISDLP 185


>gi|255652853|ref|NP_001157460.1| protein arginine N-methyltransferase 6 [Danio rerio]
          Length = 355

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPN 95
           I ++S S++G  V+++GAG G L+      GARKV  +E      Q   I+K   +Q  +
Sbjct: 53  IFKNSKSIEGKVVLDVGAGTGVLSLFCAQAGARKVYAVEASSIADQAVKIVK--LNQMED 110

Query: 96  RLEIIQ 101
           R+E+I+
Sbjct: 111 RIEVIK 116


>gi|224025726|ref|ZP_03644092.1| hypothetical protein BACCOPRO_02467 [Bacteroides coprophilus DSM
          18228]
 gi|224018962|gb|EEF76960.1| hypothetical protein BACCOPRO_02467 [Bacteroides coprophilus DSM
          18228]
          Length = 188

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 30/46 (65%)

Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          DG+T +++ AG G+++  L++ G  +VI +EKD Q +  ++ +  +
Sbjct: 44 DGVTALDLFAGTGSISIELVSRGCDRVISVEKDPQHYAFIRKVMEE 89


>gi|45709074|gb|AAH67600.1| Prmt6 protein [Danio rerio]
          Length = 354

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPN 95
           I ++S S++G  V+++GAG G L+      GARKV  +E      Q   I+K   +Q  +
Sbjct: 52  IFKNSKSIEGKVVLDVGAGTGVLSLFCAQAGARKVYAVEASSIADQAVKIVK--LNQMED 109

Query: 96  RLEIIQ 101
           R+E+I+
Sbjct: 110 RIEVIK 115


>gi|309361314|emb|CAP29948.2| CBR-PRMT-6 protein [Caenorhabditis briggsae AF16]
          Length = 228

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y    +K++G++ L+   I K I      L+G  V+++G G G+ +   L  GA +V+ I
Sbjct: 9   YTEAQQKWLGRDHLITPTIKKAIGNV---LEGKKVLDVGCGNGHYSFDFLQWGADEVVGI 65

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISSPIRII 122
           +   +   I +D   + P   +I   ++   DF  +K F++++   ++
Sbjct: 66  DNSPEMIQICQDSQKKLPESSKIDFHESNITDFSLQKHFDVATAFFVL 113


>gi|301300206|ref|ZP_07206418.1| dimethyladenosine transferase domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852147|gb|EFK79819.1| dimethyladenosine transferase domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 136

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           D + VIEIG   G LT+  LT  A +V+  E D +  PIL D      N + ++ +D LK
Sbjct: 8   DQVNVIEIGPDIGALTE-FLTERAAEVMAFEIDYRLVPILADTLRDFDNVI-VVNEDILK 65

Query: 107 VDFEKFFNIS 116
           VD      ++
Sbjct: 66  VDLAAEMGVT 75


>gi|86604368|gb|ABD13962.1| erythromycin resistance protein [Shuttle vector pBK638]
 gi|112941720|gb|ABI26288.1| ermAM [Promoter reporter vector pBKGT]
 gi|112941749|gb|ABI26293.1| ErmAM [Promoter rescue vector pBK]
          Length = 207

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-- 64

Query: 86  LKDISSQH---PNRLEIIQDDALKVDF 109
             ++SS+      R+ +I  D L+  F
Sbjct: 65  --NLSSEKLKLNTRVTLIHQDILQFQF 89


>gi|34849512|gb|AAH58308.1| Prmt6 protein [Danio rerio]
          Length = 347

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPN 95
           I ++S S++G  V+++GAG G L+      GARKV  +E      Q   I+K   +Q  +
Sbjct: 45  IFKNSKSIEGKVVLDVGAGTGVLSLFCAQAGARKVYAVEASSIADQAVKIVK--LNQMED 102

Query: 96  RLEIIQ 101
           R+E+I+
Sbjct: 103 RIEVIK 108


>gi|239977077|sp|Q6NWG4|ANM6_DANRE RecName: Full=Protein arginine N-methyltransferase 6; AltName:
           Full=Histone-arginine N-methyltransferase PRMT6
          Length = 349

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPN 95
           I ++S S++G  V+++GAG G L+      GARKV  +E      Q   I+K   +Q  +
Sbjct: 47  IFKNSKSIEGKVVLDVGAGTGVLSLFCAQAGARKVYAVEASSIADQAVKIVK--LNQMED 104

Query: 96  RLEIIQ 101
           R+E+I+
Sbjct: 105 RIEVIK 110


>gi|195330205|ref|XP_002031795.1| GM23852 [Drosophila sechellia]
 gi|194120738|gb|EDW42781.1| GM23852 [Drosophila sechellia]
          Length = 454

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           TV+E+ +G G  T+ LL   +  R++I++E    F P ++++ + +P R+++ Q D
Sbjct: 72  TVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGD 127


>gi|27436726|gb|AAN86836.1| adenine rRNA methylase [Mycobacterium smegmatis str. MC2 155]
          Length = 100

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
          +  +GQNFL D  ++  I E     +G  +IEIGAG G LT  L  L AR +  +E D
Sbjct: 8  RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTAVEVD 63


>gi|194902568|ref|XP_001980721.1| GG17302 [Drosophila erecta]
 gi|190652424|gb|EDV49679.1| GG17302 [Drosophila erecta]
          Length = 454

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           TV+E+ +G G  T+ LL   +  R++I++E    F P ++++ + +P R+++ Q D
Sbjct: 72  TVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPRIQELHALYPERVKVRQGD 127


>gi|21356125|ref|NP_649971.1| mitochondrial transcription factor B2 [Drosophila melanogaster]
 gi|74869054|sp|Q9VH38|TFB2M_DROME RecName: Full=Dimethyladenosine transferase 2, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 2;
           AltName: Full=Mitochondrial transcription factor B2;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 2; AltName:
           Full=d-mtTFB2; Flags: Precursor
 gi|16767892|gb|AAL28164.1| GH04071p [Drosophila melanogaster]
 gi|23170866|gb|AAF54482.2| mitochondrial transcription factor B2 [Drosophila melanogaster]
 gi|46394833|gb|AAS91579.1| mitochondrial transcription factor B2 [Drosophila melanogaster]
 gi|220946652|gb|ACL85869.1| mtTFB2-PA [synthetic construct]
 gi|220956302|gb|ACL90694.1| mtTFB2-PA [synthetic construct]
          Length = 452

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           TV+E+ +G G  T+ LL   +  R++I++E    F P ++++ + +P R+++ Q D
Sbjct: 70  TVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGD 125


>gi|149179371|ref|ZP_01857929.1| hypothetical protein PM8797T_10439 [Planctomyces maris DSM 8797]
 gi|148841807|gb|EDL56212.1| hypothetical protein PM8797T_10439 [Planctomyces maris DSM 8797]
          Length = 245

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 40/76 (52%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E +G   G++V+++  G G  T+ML   GA  V+ I+  Q    + +   +Q+   +E I
Sbjct: 31  ELAGDPQGLSVLDVACGEGFYTRMLRERGATHVMGIDLSQGMIELAQRQEAQNQQGIEFI 90

Query: 101 QDDALKVDFEKFFNIS 116
             DA ++   + F+++
Sbjct: 91  VGDARELPVSEQFDLA 106


>gi|323477450|gb|ADX82688.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           HVE10/4]
          Length = 198

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 35/161 (21%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G GN+T+ L        I IE D++    LK+ +        ++  DA  +   
Sbjct: 8   ILEIGCGKGNITKFL-----EPDICIELDEKMIDYLKNYN--------LVIADARYL--- 51

Query: 111 KFFNISSPI---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
                  PI   +++++LPY I +      +  D        L L+ QK+  ++I    N
Sbjct: 52  -------PILRGQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKIL---N 97

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
            P Y  +S L  +         I P  F P PKV S +  F
Sbjct: 98  DPTY--ISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVF 136


>gi|118088134|ref|XP_419535.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 392

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +GS     V+E   GPG LT+ LL  G R V+ +E    F   L+ + +    +L++I  
Sbjct: 85  AGSGPQPVVLECAPGPGVLTRTLLNAGVR-VVALESHPAFLSKLQSLENSLDGQLKVIYG 143

Query: 103 DALKVD 108
           D  ++D
Sbjct: 144 DFFRLD 149


>gi|257865929|ref|ZP_05645582.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30]
 gi|257872262|ref|ZP_05651915.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10]
 gi|257799863|gb|EEV28915.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30]
 gi|257806426|gb|EEV35248.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10]
          Length = 214

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            +L +IAE +G     +V+E G+G GNLTQ LL  G + V+ IE      P ++ I+   
Sbjct: 36  QLLAEIAEKAGQ----SVVEFGSGTGNLTQALLDQG-KNVLAIEPS----PEMRRIAKSK 86

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           P+  ++   D    D E F  I+  I  I +
Sbjct: 87  PSLSKVTFVDG---DMEVFPEITDVIDTIVS 114


>gi|257875556|ref|ZP_05655209.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20]
 gi|257809722|gb|EEV38542.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20]
          Length = 214

 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            +L +IAE +G     +V+E G+G GNLTQ LL  G + V+ IE      P ++ I+   
Sbjct: 36  QLLAEIAEKAGQ----SVVEFGSGTGNLTQALLDQG-KNVLAIEPS----PEMRRIAKSK 86

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           P+  ++   D    D E F  I+  I  I +
Sbjct: 87  PSLSKVTFVDG---DMEVFPEITDVIDTIVS 114


>gi|167032125|ref|YP_001667356.1| peptidase M22 glycoprotease [Pseudomonas putida GB-1]
 gi|166858613|gb|ABY97020.1| peptidase M22 glycoprotease [Pseudomonas putida GB-1]
          Length = 224

 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           + SHY++IP+  M    LL + I + +AES  +L+ +  I  G GPG  T + + +G  +
Sbjct: 24  VTSHYEVIPR--MHAQKLLPM-IKQLLAESGVALNALDAIAFGRGPGAFTGVRIAIGVVQ 80

Query: 73  VIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVD 108
            +    ++   P+    + +Q   R + +Q  A  +D
Sbjct: 81  GLAFALERPVLPVSNLAALAQGALREQGVQQVAAAID 117


>gi|323453370|gb|EGB09242.1| hypothetical protein AURANDRAFT_10333 [Aureococcus anophagefferens]
          Length = 542

 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           Y  G R+L+NW  ++TW P W   T  +++ +G R+ A  N P++  +S L
Sbjct: 186 YTEGQRVLWNWELSETWYPDWRRQTRRWREALGARVLAYAN-PYFTNVSHL 235


>gi|227830361|ref|YP_002832141.1| dimethyladenosine transferase [Sulfolobus islandicus L.S.2.15]
 gi|284997867|ref|YP_003419634.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           L.D.8.5]
 gi|227456809|gb|ACP35496.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           L.S.2.15]
 gi|284445762|gb|ADB87264.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           L.D.8.5]
          Length = 198

 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 35/161 (21%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G GN+T+ L        I IE D++    LK+ +        ++  DA  +   
Sbjct: 8   ILEIGCGKGNITKFL-----EPDICIELDEKMTDYLKNYN--------LVIADARYL--- 51

Query: 111 KFFNISSPI---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
                  PI   +++++LPY I +      +  D        L L+ QK+  ++I    N
Sbjct: 52  -------PILRGQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKIL---N 97

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
            P Y  +S L  +     +   I P  F P PKV S +  F
Sbjct: 98  DPTY--ISFLLNYVFDIQIKDIIPPRCFSPRPKVYSIITVF 136


>gi|307091884|gb|ADN28277.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 107

 Score = 37.4 bits (85), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 61/108 (56%), Gaps = 13/108 (12%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           + ++ +   S DG T +EIGAG G LT  L +LG R+++ ++ D +    L+    + P+
Sbjct: 6   IDRMVDLVRSTDGPT-LEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLR---RRLPS 60

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
            +++ + DAL++  ++      P+ ++ N+P++I T +L   ++   W
Sbjct: 61  -VDVRRADALQIRLDR------PV-VVGNIPFHITTPVLRRLLATGEW 100


>gi|304396992|ref|ZP_07378872.1| ribosomal protein L11 methyltransferase [Pantoea sp. aB]
 gi|304355788|gb|EFM20155.1| ribosomal protein L11 methyltransferase [Pantoea sp. aB]
          Length = 293

 Score = 37.4 bits (85), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII-- 100
            LDG TVI+ G G G L    L LGA + I I+ D Q     +D + ++   +RL +   
Sbjct: 156 DLDGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQASRDNAERNGVSDRLSLYLP 215

Query: 101 --QDDALKVDFEKFFNISSPIRIIANL 125
             Q D L+ D      ++ P+R +A L
Sbjct: 216 HQQPDNLQADVVVANILAGPLRELAPL 242


>gi|195499664|ref|XP_002097046.1| GE26003 [Drosophila yakuba]
 gi|194183147|gb|EDW96758.1| GE26003 [Drosophila yakuba]
          Length = 454

 Score = 37.4 bits (85), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           TV+E+ +G G  T+ LL   +  R++I++E    F P ++++ + +P R+++ Q D
Sbjct: 72  TVMELNSGAGYFTRHLLDRESQFRRIILLETMDHFMPKIQELHALYPERVKVRQGD 127


>gi|257054996|ref|YP_003132828.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
 gi|256584868|gb|ACU96001.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
          Length = 189

 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 30/47 (63%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          E++G LDG+ V+++ +G G L    L+ GAR+ + +E D+    +L+
Sbjct: 37 EAAGELDGVRVLDLYSGSGALGLEALSRGAREAMFVEADRTAVEVLR 83


>gi|77457298|ref|YP_346803.1| peptidase M22, glycoprotease [Pseudomonas fluorescens Pf0-1]
 gi|77381301|gb|ABA72814.1| putative glycoprotease-family protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 224

 Score = 37.4 bits (85), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 37/200 (18%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           + SHY++IP+ +  +  LL + I + +A++  +L  +  I  G GPG  T + + +G  +
Sbjct: 24  VTSHYEVIPRLHAQK--LLPM-IQQLLADAGTTLQAVDAIAFGRGPGAFTGVRIAIGVVQ 80

Query: 73  VIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVD-------FEKFFNISSPIRI--- 121
            +    D+   P+    + +Q   R   +   A  +D       +  +   +  +R+   
Sbjct: 81  GLAFALDRPVLPVSNLAVLAQRAYREHGVSQVAAAIDARMDEVYWGCYRETAGEMRLVGA 140

Query: 122 -------IANLP-------------YNIGTRLLFNWISADTWP-PFWESLTLL--FQKEV 158
                  +A LP             +  G R+  N   +D    P  E L  L  F  E 
Sbjct: 141 EAVLPPEVAALPDDASGDWFGAGTGWGYGERIAVNLSGSDAGMLPHAEDLLTLARFAWER 200

Query: 159 GERITAQKNSPHYGRLSVLT 178
           GE I A    P Y R  V T
Sbjct: 201 GEAIPADDAQPVYLRDKVAT 220


>gi|258545948|ref|ZP_05706182.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826]
 gi|258518826|gb|EEV87685.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826]
          Length = 248

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQ 81
           K++GQ+FL D  ++ ++     +  G  ++EIG G G LT  +L   GA  +  +E D +
Sbjct: 8   KHLGQHFLRDEAVIARLLAVINAKAGERILEIGPGLGALTLPLLRQTGA--MTAVEYDPR 65

Query: 82  FF-PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118
              P+ K  ++     L +I  D L +DF +      P
Sbjct: 66  VLAPLAKKAATL--GTLHLIHADILTIDFGELLAKQPP 101


>gi|224370439|ref|YP_002604603.1| putative SAM-dependent methyltransferase [Desulfobacterium
           autotrophicum HRM2]
 gi|223693156|gb|ACN16439.1| putative SAM-dependent methyltransferase [Desulfobacterium
           autotrophicum HRM2]
          Length = 288

 Score = 37.0 bits (84), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 41  ESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ---HPNR 96
           E +G+L  G  +++IG+GPGN    ++ +GA +V+ +E       ILK+  +    H ++
Sbjct: 64  EDAGALQAGNRILDIGSGPGNWAIPMVEMGA-EVVAVEPSGGMVKILKEKMAAKGIHSDQ 122

Query: 97  LEIIQDDALKVDFEK 111
           L I Q     VD EK
Sbjct: 123 LRIDQRAWQDVDVEK 137


>gi|218264183|ref|ZP_03478067.1| hypothetical protein PRABACTJOHN_03757 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222229|gb|EEC94879.1| hypothetical protein PRABACTJOHN_03757 [Parabacteroides johnsonii
           DSM 18315]
          Length = 205

 Score = 37.0 bits (84), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++E+G+G G++T +L  L    +I  EKD+Q   I +       NR  I+ ++     F 
Sbjct: 47  ILEVGSGLGDITAILCYLDFTNIIAFEKDEQICHIAQRRLKDMFNRENIVYNEK----FP 102

Query: 111 KFFNISSPIRIIANLPY 127
              N SS + ++ N  Y
Sbjct: 103 NRQNYSSDVLVLVNCAY 119


>gi|149910033|ref|ZP_01898681.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36]
 gi|149806901|gb|EDM66862.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36]
          Length = 293

 Score = 37.0 bits (84), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD------ISSQHPNRLE 98
            L G TV++ G G G L    L LGA++VI ++ D Q     +D      ++ Q    L 
Sbjct: 156 DLTGKTVVDFGCGSGILAIAALKLGAKRVIGVDIDPQAILASRDNAERNGVADQIELYLP 215

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANL 125
             Q D +K D      +++P+R ++ L
Sbjct: 216 ADQPDGIKADIVVANILAAPLRELSGL 242


>gi|313681823|ref|YP_004059561.1| methyltransferase [Sulfuricurvum kujiense DSM 16994]
 gi|313154683|gb|ADR33361.1| methyltransferase [Sulfuricurvum kujiense DSM 16994]
          Length = 195

 Score = 37.0 bits (84), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDAL 105
           ++E+ +G G++    L+ GA+K+I +EKD+     L++ I+   P+  E+I+ D+ 
Sbjct: 53  LVEVFSGSGSIGLEALSRGAKKIIFMEKDRDAIRTLRENIAQTDPSACEVIEGDSF 108


>gi|307091930|gb|ADN28300.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 37.0 bits (84), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  ++  + E     DG  ++E+GAG G LT  L  LG R +  IE D +    L   +S
Sbjct: 2   DRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRTS 59

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
                        +  DF ++    +P  I+ NLP+++ T +L   +    W
Sbjct: 60  ASTR--------VVDADFLQYRLPRAPHVIVGNLPFHLTTAMLRRILHGPAW 103


>gi|238794626|ref|ZP_04638232.1| Ribosomal protein L11 methyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238726015|gb|EEQ17563.1| Ribosomal protein L11 methyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 293

 Score = 37.0 bits (84), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII-- 100
           SLDG TVI+ G G G L    L LGA + I I+ D Q     +D + ++    RLE+   
Sbjct: 156 SLDGKTVIDFGCGSGILAIAALKLGATRAIGIDIDPQAIQASRDNAQRNGVSERLELYLA 215

Query: 101 --QDDALKVDFEKFFNISSPIRIIANL 125
             Q   L  D      ++ P+R +A L
Sbjct: 216 KDQPADLSADVVVANILAGPLRELAPL 242


>gi|152002559|dbj|BAF73583.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-W]
          Length = 455

 Score = 37.0 bits (84), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           + +G   G  ++E+GAG GN+T+ L+   G + VI +E D++   +L++   + P  L +
Sbjct: 291 QDTGLKTGEKILELGAGSGNVTKYLVQKFGTQNVIALEYDKELCNVLRN---KFPG-LTV 346

Query: 100 IQDDA 104
           I+ DA
Sbjct: 347 IEGDA 351


>gi|307595611|ref|YP_003901928.1| methyltransferase [Vulcanisaeta distributa DSM 14429]
 gi|307550812|gb|ADN50877.1| methyltransferase small [Vulcanisaeta distributa DSM 14429]
          Length = 214

 Score = 36.6 bits (83), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 27  QNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           + ++ D NI+      A     L    V+++G G G        +GAR+VI ++ D +  
Sbjct: 33  EQYITDANIVAVAIWDAYMRNYLTNARVLDLGCGTGRFAIAAALMGARQVICVDIDPEAL 92

Query: 84  PILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            I K+ +S++  N ++ + +D   +     FN+     I  N P+ I
Sbjct: 93  TIAKESASEYGLNNVDFVTNDVRNMAITGKFNV-----IFQNPPFGI 134


>gi|322410938|gb|EFY01846.1| adenine-specific methyltransferase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 317

 Score = 36.6 bits (83), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQ 92
           IL  + E     D + V+EIG+G GNL Q LL    +K+  + IE D     +   I+  
Sbjct: 97  ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTIKKLDYVGIELDDLLIDLSASIAEV 156

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    IQ+DA++    K  ++     +I++LP
Sbjct: 157 MDSSARFIQEDAVRPQLLKESDV-----VISDLP 185


>gi|114452116|gb|ABI75032.1| erythromycin resistance protein [uncultured bacterium]
          Length = 121

 Score = 36.6 bits (83), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALK 106
           TV EIG G G+LT  L  + +++V  IE D   F    ++SS+      R+ +I  D L+
Sbjct: 2   TVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF----NLSSEKLKLNTRVTLIHQDILQ 56

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLL 134
             F          +I+ ++PY++ T+++
Sbjct: 57  FQFPN----KQRYKIVGSIPYHLSTQII 80


>gi|198450471|ref|XP_001357992.2| GA17767 [Drosophila pseudoobscura pseudoobscura]
 gi|198131051|gb|EAL27128.2| GA17767 [Drosophila pseudoobscura pseudoobscura]
          Length = 452

 Score = 36.6 bits (83), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           TV+E+  G G+ T+ LL      RK+I++E  + F P L ++ + +P R+++   D
Sbjct: 74  TVLELNPGAGHFTRHLLDRETQFRKIILLESMEYFMPRLHELHTLYPERVKVRHGD 129


>gi|12081903|dbj|BAB20748.1| ErmGM [Staphylococcus aureus]
 gi|57207872|dbj|BAD86539.1| ermGM [Staphylococcus aureus]
          Length = 244

 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 15/182 (8%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
             QNF+     + KI  +        V EIG+G G+ T + L      V VIE D     
Sbjct: 8   FSQNFITSKRHINKIMSNLELNRNDNVFEIGSGKGHFT-LELVQKCNYVTVIEIDSNLCI 66

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
             ++  + + N   II  D L+  F      +   +I  N+PY I T ++   +      
Sbjct: 67  QTQNKVTNYDN-FRIINKDILQFKFPN----NKAYKIYGNIPYYISTDIVRKIVFESEAT 121

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             +    L+ ++   +R+     S     L++L       +++  I    F P PK+ S+
Sbjct: 122 VSY----LIVEEGFAKRLLNTNRS-----LALLLMTEVDISILSKIPKEYFHPKPKINSS 172

Query: 205 VI 206
           +I
Sbjct: 173 LI 174


>gi|229579179|ref|YP_002837577.1| dimethyladenosine transferase [Sulfolobus islandicus Y.G.57.14]
 gi|229582069|ref|YP_002840468.1| dimethyladenosine transferase [Sulfolobus islandicus Y.N.15.51]
 gi|228009893|gb|ACP45655.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012785|gb|ACP48546.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           Y.N.15.51]
          Length = 198

 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 35/161 (21%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G GN+T+ L        I IE D++    LK+ +        ++  DA  +   
Sbjct: 8   ILEIGCGKGNITKFL-----EPDICIELDEKMTDYLKNYN--------LVIADARYL--- 51

Query: 111 KFFNISSPI---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
                  PI   +++++LPY I +      +  D        L L+ QK+  ++I    N
Sbjct: 52  -------PILRGQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKIL---N 97

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
            P Y  +S L  +         I P  F P PKV S +  F
Sbjct: 98  DPTY--ISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVF 136


>gi|85057695|ref|YP_456611.1| dimethyladenosine transferase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789800|gb|ABC65532.1| dimethyladenosine transferase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 450

 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 39  IAESSGSLD---GITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHP 94
           + E    LD   G  ++E+GAG GN+T+ L+   G + VI +E D++   +L++   + P
Sbjct: 279 VFEEKQDLDSKTGEKILELGAGSGNVTKYLVQKFGVKNVIALEFDKELCNVLRN---KFP 335

Query: 95  NRLEIIQDDA 104
           + L +I+ DA
Sbjct: 336 D-LTVIEGDA 344


>gi|256394693|ref|YP_003116257.1| methyltransferase type 12 [Catenulispora acidiphila DSM 44928]
 gi|256360919|gb|ACU74416.1| Methyltransferase type 12 [Catenulispora acidiphila DSM 44928]
          Length = 257

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           N + DL     +AE  G   G+ V+EIGAG G  T  LL  GA  V V   +     +  
Sbjct: 19  NIVFDL-----LAERCGLKPGVRVLEIGAGSGLATGPLLAAGAHVVAVEPGESLAALLAA 73

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           D +    +RL I   D    D    F+++     +  L     T+ +   +  D W   W
Sbjct: 74  DHAC---DRLHITVSDFETADLSPGFDLAVAASALHWLDPATSTQRIATLVRPDGWLAAW 130


>gi|304391527|ref|ZP_07373469.1| putative methylase [Ahrensia sp. R2A130]
 gi|303295756|gb|EFL90114.1| putative methylase [Ahrensia sp. R2A130]
          Length = 227

 Score = 36.6 bits (83), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN-RLEIIQD 102
           G++ G+ V++IGAG G LT  L  LGAR V      +     +K   ++HP+ R      
Sbjct: 18  GNIAGLDVLDIGAGSGRLTHRLSNLGARAVGAEPNPEA----VKAAQAKHPDIRFVTAPT 73

Query: 103 DALKVDFEKF 112
           +AL  D   F
Sbjct: 74  EALPFDAATF 83


>gi|119597557|gb|EAW77151.1| transcription factor B2, mitochondrial, isoform CRA_c [Homo
           sapiens]
          Length = 295

 Score = 36.6 bits (83), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           ++E   GPG LTQ LL  GA KV+ +E D+ F P L+ + +   N
Sbjct: 99  LLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLEKLMADPGN 142


>gi|153870300|ref|ZP_01999730.1| hypothetical protein BGP_0907 [Beggiatoa sp. PS]
 gi|152073233|gb|EDN70269.1| hypothetical protein BGP_0907 [Beggiatoa sp. PS]
          Length = 86

 Score = 36.6 bits (83), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
          G  ++E+GAG G+ +Q+LL      +  IE  Q  FP+L +     P+
Sbjct: 37 GSHLLEVGAGTGDFSQLLLQTQPTSLTTIEPSQNMFPLLDEKLKNEPH 84


>gi|307091886|gb|ADN28278.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307091904|gb|ADN28287.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 107

 Score = 36.6 bits (83), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 27/115 (23%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           + ++ +   S DG  ++EIGAG G LT  L +LG R+++ +           DI  +H +
Sbjct: 6   IDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAV-----------DIDGRHVD 52

Query: 96  RLE-------IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           RL        + + DAL++  ++      P+ ++ N+P++I T +L   ++   W
Sbjct: 53  RLRRRLPSVVVRRADALQIRLDR------PV-VVGNIPFHITTPILRRLLATGEW 100


>gi|302348992|ref|YP_003816630.1| Predicted RNA methylase [Acidilobus saccharovorans 345-15]
 gi|302329404|gb|ADL19599.1| Predicted RNA methylase [Acidilobus saccharovorans 345-15]
          Length = 200

 Score = 36.6 bits (83), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          G +DG TV ++G+G   +    L LGAR+ I ++ D +F  I K
Sbjct: 37 GLIDGATVADLGSGTCRIAIASLLLGARRAIAVDYDYRFGSICK 80


>gi|94993496|ref|YP_601594.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|94547004|gb|ABF37050.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 332

 Score = 36.6 bits (83), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92
           IL  + E     D + V+EIG+G GNL Q LL  T  +   + IE D     +   I+  
Sbjct: 112 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 171

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    IQ+DA++    K  +I     +I++LP
Sbjct: 172 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 200


>gi|312886401|ref|ZP_07746010.1| methyltransferase [Mucilaginibacter paludis DSM 18603]
 gi|311301029|gb|EFQ78089.1| methyltransferase [Mucilaginibacter paludis DSM 18603]
          Length = 180

 Score = 36.6 bits (83), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            +G+ V+++ +G GN++    + GAR+V+ +++       +KD + QH  ++E I     
Sbjct: 42  FEGLNVLDLFSGTGNISLEFASRGARQVVAVDRSVHCINYVKDTARQH--KVEDIV--TY 97

Query: 106 KVDFEKFFNISSPIR--IIANLPYNI 129
           K D  K+  + +     I A+ PY++
Sbjct: 98  KADVFKYLEMETEQYDLIFADPPYDL 123


>gi|307091894|gb|ADN28282.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 107

 Score = 36.6 bits (83), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 27/115 (23%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           + ++ +   S DG  ++EIGAG G LT  L +LG R+++ +           DI  +H +
Sbjct: 6   IDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAV-----------DIDGRHVD 52

Query: 96  RLE-------IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           RL        + + DAL++  ++      P+ ++ N+P++I T +L   ++   W
Sbjct: 53  RLRRRLPSVVVRRADALQIRLDR------PV-VVGNIPFHITTPILRRLLTTGEW 100


>gi|306828212|ref|ZP_07461473.1| adenine-specific methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304429590|gb|EFM32638.1| adenine-specific methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 332

 Score = 36.6 bits (83), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92
           IL  + E     D + V+EIG+G GNL Q LL  T  +   + IE D     +   I+  
Sbjct: 112 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 171

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    IQ+DA++    K  +I     +I++LP
Sbjct: 172 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 200


>gi|156972541|ref|YP_001443448.1| ribosomal protein L11 methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|166223500|sp|A7MXI3|PRMA_VIBHB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|156524135|gb|ABU69221.1| hypothetical protein VIBHAR_00173 [Vibrio harveyi ATCC BAA-1116]
          Length = 295

 Score = 36.6 bits (83), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII-- 100
            L G TVI+ G G G L    + LGA KVI I+ D Q     +D + ++   N+LE+   
Sbjct: 157 DLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQASRDNAERNGVANQLEVFLP 216

Query: 101 --QDDALKVDFEKFFNISSPIRIIA 123
             Q + L  D      ++ P+R +A
Sbjct: 217 QNQPEGLIADVVVANILAGPLRELA 241


>gi|71902757|ref|YP_279560.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|94989604|ref|YP_597704.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|71801852|gb|AAX71205.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|94543112|gb|ABF33160.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 332

 Score = 36.6 bits (83), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92
           IL  + E     D + V+EIG+G GNL Q LL  T  +   + IE D     +   I+  
Sbjct: 112 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 171

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    IQ+DA++    K  +I     +I++LP
Sbjct: 172 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 200


>gi|94987725|ref|YP_595826.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94991593|ref|YP_599692.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94541233|gb|ABF31282.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94545101|gb|ABF35148.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 332

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92
           IL  + E     D + V+EIG+G GNL Q LL  T  +   + IE D     +   I+  
Sbjct: 112 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 171

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    IQ+DA++    K  +I     +I++LP
Sbjct: 172 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 200


>gi|307092050|gb|ADN28360.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           VIEIG G G L++ +   G   + +IE   +   +L+D   +    + +I  D L +   
Sbjct: 21  VIEIGPGLGILSEAIFRHGVHSLTMIELVMRLATVLQD-RMRDRRGVNVINADFLDL--- 76

Query: 111 KFFNISSPIRIIANLPYNIGTRLL 134
           +      P++++ANLP+N+ + +L
Sbjct: 77  RGLPGDGPLKVVANLPFNVASAIL 100


>gi|302793634|ref|XP_002978582.1| hypothetical protein SELMODRAFT_233156 [Selaginella moellendorffii]
 gi|300153931|gb|EFJ20568.1| hypothetical protein SELMODRAFT_233156 [Selaginella moellendorffii]
          Length = 215

 Score = 36.2 bits (82), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 36/164 (21%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF-------PIL 86
            KK   S   LDG+T++++G G G L + L  +GA    +  +E++ +         P+ 
Sbjct: 17  FKKDPISPRPLDGLTILDVGCGGGLLCEPLARMGAHVTGIDAVEENIEVAKLHAAKDPLT 76

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
             I  QH    +++Q+       ++ F+I + + +I ++P  +                F
Sbjct: 77  ATILYQHTTAEQLVQE-------KQQFDIVAALEVIEHVPDPMD---------------F 114

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLT-----GWRTKAT 185
            +SL+LL +++    I+    SP    L++       GW  K T
Sbjct: 115 LQSLSLLTKQDGAVVISTLNRSPTSYSLAIFAAEYILGWLPKGT 158


>gi|15674331|ref|NP_268505.1| hypothetical protein SPy_0108 [Streptococcus pyogenes M1 GAS]
 gi|71909907|ref|YP_281457.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|13621415|gb|AAK33226.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|71852689|gb|AAZ50712.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS5005]
          Length = 317

 Score = 36.2 bits (82), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92
           IL  + E     D + V+EIG+G GNL Q LL  T  +   + IE D     +   I+  
Sbjct: 97  ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 156

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    IQ+DA++    K  +I     +I++LP
Sbjct: 157 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 185


>gi|56808822|ref|ZP_00366535.1| COG0827: Adenine-specific DNA methylase [Streptococcus pyogenes M49
           591]
 gi|209558673|ref|YP_002285145.1| Adenine-specific methyltransferase [Streptococcus pyogenes NZ131]
 gi|209539874|gb|ACI60450.1| Adenine-specific methyltransferase [Streptococcus pyogenes NZ131]
          Length = 317

 Score = 36.2 bits (82), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92
           IL  + E     D + V+EIG+G GNL Q LL  T  +   + IE D     +   I+  
Sbjct: 97  ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 156

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    IQ+DA++    K  +I     +I++LP
Sbjct: 157 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 185


>gi|325294970|ref|YP_004281484.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065418|gb|ADY73425.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 193

 Score = 36.2 bits (82), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ---HPNRLEIIQD 102
           L+G+  +++ AG GN+    ++ GA+KV+ +E D++F  ++++   +      + EII D
Sbjct: 44  LEGVKFLDLFAGTGNVGIEAISRGAKKVVFVENDKRFCNLIEENLRKLGVERGKYEIICD 103

Query: 103 D 103
           D
Sbjct: 104 D 104


>gi|307091892|gb|ADN28281.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 107

 Score = 36.2 bits (82), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 27/115 (23%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           + ++ +   S DG  ++EIGAG G LT  L +LG R+++ +           DI  +H +
Sbjct: 6   IDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAV-----------DIDGRHVD 52

Query: 96  RLE-------IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           RL        + + DAL++  ++      P+ ++ N+P++I T +L   ++   W
Sbjct: 53  RLRRRLPSVVVRRADALQIRLDR------PV-VVGNIPFHITTPILRRLLATGEW 100


>gi|19745287|ref|NP_606423.1| hypothetical protein spyM18_0110 [Streptococcus pyogenes MGAS8232]
 gi|139472971|ref|YP_001127686.1| hypothetical protein SpyM50091 [Streptococcus pyogenes str.
           Manfredo]
 gi|19747385|gb|AAL96922.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|134271217|emb|CAM29433.1| conserved hypothetical protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 317

 Score = 36.2 bits (82), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92
           IL  + E     D + V+EIG+G GNL Q LL  T  +   + IE D     +   I+  
Sbjct: 97  ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 156

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    IQ+DA++    K  +I     +I++LP
Sbjct: 157 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 185


>gi|242242868|ref|ZP_04797313.1| methyltransferase [Staphylococcus epidermidis W23144]
 gi|242233681|gb|EES35993.1| methyltransferase [Staphylococcus epidermidis W23144]
 gi|319400927|gb|EFV89146.1| methyltransferase domain protein [Staphylococcus epidermidis
           FRI909]
          Length = 239

 Score = 36.2 bits (82), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           D   +++IG G GNLTQ+L +LG    + I  D      +  I+SQ  N+++ I+ +   
Sbjct: 34  DSHDLLDIGCGTGNLTQLLTSLGEVTGMDISVD------MLSIASQKTNQVKWIEGNMTH 87

Query: 107 VDFEKFFNI 115
            +  K FN+
Sbjct: 88  FNLNKKFNM 96


>gi|260912006|ref|ZP_05918569.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633884|gb|EEX52011.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 482

 Score = 36.2 bits (82), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  ++E  AG GN+ + L   GA +VI  EKD+    +L           +++ +D L V
Sbjct: 29  GKVILEPSAGSGNIVRWLKNNGAGEVIACEKDKHLQKLL-------AGECQLLAEDFLSV 81

Query: 108 DFEKFFNISSPIRIIANLPYNIGTR 132
             E+   +S    I+ N P++ G R
Sbjct: 82  TAEQ---VSHIDYIVMNPPFSEGIR 103


>gi|552002|gb|AAA26876.1| ermAM protein A [Plasmid pAM-beta-1]
          Length = 94

 Score = 36.2 bits (82), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           KY  QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   
Sbjct: 6   KY-SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHL 63

Query: 83  FPILKDISSQH---PNRLEIIQDDALKVDF 109
           F    ++SS+      R+ +I  D L+  F
Sbjct: 64  F----NLSSEKLKLNTRVTLIHQDILQFQF 89


>gi|190346593|gb|EDK38715.2| hypothetical protein PGUG_02814 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 447

 Score = 36.2 bits (82), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKV 107
           +V+  G G G L Q+++ + + K+  +EK+ Q   ILK+ ++    +R+EI+  DA +V
Sbjct: 293 SVLVAGPGRGPLLQIVVEMSSAKITGVEKNPQCIDILKERNAHEWQDRVEIVHKDAREV 351


>gi|226304682|ref|YP_002764640.1| methyltransferase [Rhodococcus erythropolis PR4]
 gi|226183797|dbj|BAH31901.1| putative methyltransferase [Rhodococcus erythropolis PR4]
          Length = 250

 Score = 36.2 bits (82), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 49  ITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
            TV+++  GPG+L+  +L       V+ I+ D     + +  S++  +RL+++  D L  
Sbjct: 43  FTVVDLACGPGSLSARILEKFKHASVVGIDYDPMLLEVARQSSTRFGDRLQLVDADLLST 102

Query: 108 DFEKFFNISSPIRIIAN 124
           D+    ++++P++ I +
Sbjct: 103 DWPT--SVTAPVQAIVS 117


>gi|151301132|ref|NP_001093089.1| methyltransferase [Bombyx mori]
 gi|87248173|gb|ABD36139.1| S-adenosylmethionine-dependent methyltransferase [Bombyx mori]
 gi|95102706|gb|ABF51291.1| methyltransferase [Bombyx mori]
          Length = 214

 Score = 36.2 bits (82), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHP 94
           L  I    G L+   +++ G GPGNL+   + LGA  V  +E D     + ++ I     
Sbjct: 41  LYTIQTQFGDLEDKLILDAGCGPGNLSIGAVLLGAGFVTSVEIDADALEVFQENIQEMEI 100

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
             ++I+Q D L   + ++ N+     +I N P+  GT+
Sbjct: 101 ENIDIVQCDFLSESYFRWENMFDT--VIMNPPF--GTK 134


>gi|21909621|ref|NP_663889.1| hypothetical protein SpyM3_0085 [Streptococcus pyogenes MGAS315]
 gi|28894998|ref|NP_801348.1| hypothetical protein SPs0086 [Streptococcus pyogenes SSI-1]
 gi|21903803|gb|AAM78692.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28810243|dbj|BAC63181.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 317

 Score = 36.2 bits (82), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92
           IL  + E     D + V+EIG+G GNL Q LL  T  +   + IE D     +   I+  
Sbjct: 97  ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 156

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    IQ+DA++    K  +I     +I++LP
Sbjct: 157 MDSSAHFIQEDAVRPQLLKESDI-----VISDLP 185


>gi|18542240|gb|AAL75493.1| ErmC [Staphylococcus aureus]
 gi|18542242|gb|AAL75494.1| ErmC [Staphylococcus aureus]
 gi|18542244|gb|AAL75495.1| ErmC [Staphylococcus aureus]
 gi|18542246|gb|AAL75496.1| ErmC [Staphylococcus aureus]
          Length = 127

 Score = 36.2 bits (82), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           + EIG+G G+ T + L      V  IE D +     ++    H N  +++  D L+  F 
Sbjct: 5   IFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQFKFP 62

Query: 111 KFFNISSPIRIIANLPYNIGT----RLLFNWISADTW 143
           K    +   +I  N+PYNI T    +++F+ I+ + +
Sbjct: 63  K----NQSYKIFGNIPYNISTDIIRKIVFDSIADEIY 95


>gi|313500268|gb|ADR61634.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 224

 Score = 35.8 bits (81), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           + SHY++IP+  M    LL + I + +A+S  +L+ +  I  G GPG  T + + +G  +
Sbjct: 24  VTSHYEVIPR--MHAQKLLPM-IKQLLADSGVALNALDAIAFGRGPGAFTGVRIAIGVVQ 80

Query: 73  VIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVD 108
            +    ++   P+    + +Q   R + +Q  A  +D
Sbjct: 81  GLAFALERPVLPVSNLAALAQGALREQGVQQVAAAID 117


>gi|269966803|ref|ZP_06180876.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus 40B]
 gi|269828470|gb|EEZ82731.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus 40B]
          Length = 295

 Score = 35.8 bits (81), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99
            S  L G TVI+ G G G L    + LGA KVI I+ D Q     KD + ++   ++LE+
Sbjct: 154 ESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAERNGVADKLEV 213

Query: 100 I----QDDALKVDFEKFFNISSPIRIIA 123
                Q + L  D      ++ P+R +A
Sbjct: 214 YLPQNQPEGLVADVVVANILAGPLRELA 241


>gi|15897649|ref|NP_342254.1| dimethyladenosine transferase [Sulfolobus solfataricus P2]
 gi|284174975|ref|ZP_06388944.1| dimethyladenosine transferase [Sulfolobus solfataricus 98/2]
 gi|6015727|emb|CAB57554.1| rRNA N-6 methyl transferase [Sulfolobus solfataricus P2]
 gi|13813916|gb|AAK41044.1| rRNA adenine N-6-methyltransferase (erm/ksgA) [Sulfolobus
           solfataricus P2]
 gi|261602418|gb|ACX92021.1| ribosomal RNA adenine methylase transferase [Sulfolobus
           solfataricus 98/2]
          Length = 194

 Score = 35.8 bits (81), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 39/198 (19%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G GN+T+ L        I IE D +    LK+ +        ++  DA  +   
Sbjct: 8   ILEIGCGKGNITRFL-----EPDICIELDDKMIEYLKNFN--------LVIADARYL--- 51

Query: 111 KFFNISSPI---RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
                  P+   +++++LPY I +      I  +        LTL+ QK+  ++I    N
Sbjct: 52  -------PVLRGQLVSSLPYQITSDFFKEVIKLNN----IRKLTLILQKDFVDKIF---N 97

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227
              Y  +S L  +     +   I P  F P PKV S +  F    N I    + +  I  
Sbjct: 98  DSTY--ISFLLNYIYNIQIKDIIPPSCFSPRPKVYSIITIF----NRIREYDKEVDSILS 151

Query: 228 EAFGKRRKTLRQSLKRLG 245
                R KTLR++ K  G
Sbjct: 152 CISRYRNKTLRKASKLCG 169


>gi|146418237|ref|XP_001485084.1| hypothetical protein PGUG_02814 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 447

 Score = 35.8 bits (81), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKV 107
           +V+  G G G L Q+++ + + K+  +EK+ Q   ILK+ ++    +R+EI+  DA +V
Sbjct: 293 SVLVAGPGRGPLLQIVVEMSSAKITGVEKNPQCIDILKERNAHEWQDRVEIVHKDAREV 351


>gi|50913487|ref|YP_059459.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|50902561|gb|AAT86276.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 332

 Score = 35.8 bits (81), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92
           IL  + E     D + V+EIG+G GNL Q LL  T  +   + IE D     +   I+  
Sbjct: 112 ILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEI 171

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    +Q+DA++    K  +I     +I++LP
Sbjct: 172 MDSSAHFVQEDAVRPQLLKESDI-----VISDLP 200


>gi|8671851|gb|AAF78414.1|AC009273_20 Identical to dimethyladenosine transferase from Arabidopsis
           thaliana gb|AF051326. It contains ribosomal RNA adenine
           dimethylases PF|00398. This gene is cut off
          Length = 87

 Score = 35.8 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 225 ITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +   AF  +RK LR+SL+ +      E  L  AG+    R E L+++DF ++ N++
Sbjct: 29  LVNSAFNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLDDFVKLHNVI 84


>gi|18542234|gb|AAL75490.1| ErmC [Staphylococcus aureus]
 gi|18542236|gb|AAL75491.1| ErmC [Staphylococcus aureus]
 gi|18542238|gb|AAL75492.1| ErmC [Staphylococcus aureus]
          Length = 127

 Score = 35.8 bits (81), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           + EIG+G G+ T + L      V  IE D +     ++    H N  +++  D L+  F 
Sbjct: 5   IFEIGSGKGHFT-LELVQRCNFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQFKFP 62

Query: 111 KFFNISSPIRIIANLPYNIGT----RLLFNWISADTW 143
           K    +   +I  N+PYNI T    +++F+ I+ + +
Sbjct: 63  K----NQSYKIFGNIPYNISTDIIRKIVFDSIADEIY 95


>gi|307091900|gb|ADN28285.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 35.8 bits (81), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  ++  + E     DG  ++E+GAG G LT  L  LG R +  IE D +    L   +S
Sbjct: 2   DRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRTS 59

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
                        +  D+ ++    +P  I+ NLP+++ T +L   +    W
Sbjct: 60  ASTR--------VVDTDYLQYRLPRAPHVIVGNLPFHLTTAMLRRILHGPAW 103


>gi|328956907|ref|YP_004374293.1| putative AdoMet-dependent methyltransferase [Carnobacterium sp.
          17-4]
 gi|328673231|gb|AEB29277.1| putative AdoMet-dependent methyltransferase [Carnobacterium sp.
          17-4]
          Length = 214

 Score = 35.8 bits (81), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 4/36 (11%)

Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
          NILK+I + SG    + V+E G G GNLTQ LL+ G
Sbjct: 36 NILKEIVQRSG----MNVLEFGIGTGNLTQRLLSSG 67


>gi|91228891|ref|ZP_01262793.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus
           12G01]
 gi|91187556|gb|EAS73886.1| ribosomal protein L11 methyltransferase [Vibrio alginolyticus
           12G01]
          Length = 295

 Score = 35.8 bits (81), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99
            S  L G TVI+ G G G L    + LGA KVI I+ D Q     KD + ++   ++LE+
Sbjct: 154 ESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAERNGVADKLEV 213

Query: 100 I----QDDALKVDFEKFFNISSPIRIIA 123
                Q + L  D      ++ P+R +A
Sbjct: 214 YLPQNQPEGLVADVVVANILAGPLRELA 241


>gi|225869590|ref|YP_002745537.1| hypothetical protein SEQ_0117 [Streptococcus equi subsp. equi 4047]
 gi|225698994|emb|CAW92070.1| conserved hypothetical protein [Streptococcus equi subsp. equi
           4047]
          Length = 317

 Score = 35.8 bits (81), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQ 92
           I+  I E+  S + + V+EIG+G GNL Q +L    + +  + IE D     +   I+  
Sbjct: 97  IMLYILETLSSQESLDVLEIGSGTGNLAQTILNHSHKSIDYLGIELDDLLIDLSASIAEI 156

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +  + IQ+DA++    K  ++     II++LP
Sbjct: 157 MGSSAQFIQEDAIRPQLLKESDL-----IISDLP 185


>gi|225851286|ref|YP_002731520.1| hypothetical protein PERMA_1756 [Persephonella marina EX-H1]
 gi|225645830|gb|ACO04016.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 152

 Score = 35.8 bits (81), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 13/104 (12%)

Query: 36  LKKIAESSGSLD-----------GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +KKI  +SG +            G + +++ AG G +    +  GA +VI +EKD++   
Sbjct: 1   MKKIRPTSGKVKQALFNILYDITGESFLDLFAGTGEIGLTAVKKGASQVIFVEKDRKRAE 60

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            +K   S++    ++I  DA+K  F K +   +   I A+ PY+
Sbjct: 61  QIKKKVSKYTQNFKVITADAIK--FLKNYKKEAFDIIFADPPYD 102


>gi|158341221|ref|YP_001522415.1| hypothetical protein AM1_F0111 [Acaryochloris marina MBIC11017]
 gi|158311462|gb|ABW33073.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 274

 Score = 35.8 bits (81), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++ ++ E +   +G  ++EIG GPG  T     LG   ++ +E +  F+ I +   S +P
Sbjct: 41  LISRVVELTQLENGSRILEIGCGPGTATVSFANLGF-SMLCLEPNPDFYEIARRNCSHYP 99

Query: 95  NRLEI 99
           N LEI
Sbjct: 100 N-LEI 103


>gi|195166002|ref|XP_002023824.1| GL27200 [Drosophila persimilis]
 gi|194105984|gb|EDW28027.1| GL27200 [Drosophila persimilis]
          Length = 452

 Score = 35.8 bits (81), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           TV+E+  G G+ T+ LL      RK+I++E    F P L ++ + +P R+++   D
Sbjct: 74  TVLELNPGAGHFTRHLLDRETQFRKIILLESMDYFMPRLHELHTLYPERVKVRHGD 129


>gi|15922284|ref|NP_377953.1| hypothetical protein ST1967 [Sulfolobus tokodaii str. 7]
 gi|15623073|dbj|BAB67062.1| 244aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 244

 Score = 35.8 bits (81), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
           ++ G  V++IGAG G+ +    T+GA++V+ +E D++   ++++ + +   N + ++   
Sbjct: 100 NVKGKRVLDIGAGVGDSSIYFSTMGAKEVVAVEIDKKKIELMRENLRTNGINNVIVVDKG 159

Query: 104 ALKVDFEKFFNISSPIR 120
              VD E F +    I+
Sbjct: 160 VGTVDNENFISWERLIK 176


>gi|158340651|ref|YP_001521819.1| hypothetical protein AM1_D0008 [Acaryochloris marina MBIC11017]
 gi|158310892|gb|ABW32505.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 275

 Score = 35.8 bits (81), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++ ++ E +   +G  ++EIG GPG  T     LG   ++ +E +  F+ I +   S +P
Sbjct: 42  LISRVVELTQLENGSRILEIGCGPGTATVSFANLGF-SMLCLEPNPDFYEIARRNCSHYP 100

Query: 95  NRLEI 99
           N LEI
Sbjct: 101 N-LEI 104


>gi|310657947|ref|YP_003935668.1| methyltransferase [Clostridium sticklandii DSM 519]
 gi|308824725|emb|CBH20763.1| putative methyltransferase [Clostridium sticklandii]
          Length = 250

 Score = 35.8 bits (81), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++E+G G GN+T+ LL +G  +V+ I+  +Q   +  +    + +++ +++ D  ++DFE
Sbjct: 41  ILELGCGSGNITKHLLDMGY-EVVGIDISEQMLELAHEKLKDYEDKVILMEQDIRELDFE 99

Query: 111 KF 112
            +
Sbjct: 100 IY 101


>gi|28899657|ref|NP_799262.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153839616|ref|ZP_01992283.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|260361497|ref|ZP_05774544.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|260878172|ref|ZP_05890527.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260895468|ref|ZP_05903964.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|260903324|ref|ZP_05911719.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|38605240|sp|Q87KU2|PRMA_VIBPA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|28807909|dbj|BAC61146.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149746855|gb|EDM57843.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|308088059|gb|EFO37754.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308094108|gb|EFO43803.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308109531|gb|EFO47071.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308112847|gb|EFO50387.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|328472221|gb|EGF43091.1| ribosomal protein L11 methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 295

 Score = 35.8 bits (81), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99
            S  L G TVI+ G G G L    + LGA KVI I+ D Q     KD + ++   ++LE+
Sbjct: 154 ESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAERNGVADKLEV 213

Query: 100 I----QDDALKVDFEKFFNISSPIRIIA 123
                Q + L  D      ++ P+R +A
Sbjct: 214 YLPQNQPEGLIADVVVANILAGPLRELA 241


>gi|170047169|ref|XP_001851106.1| methyltransferase [Culex quinquefasciatus]
 gi|167869669|gb|EDS33052.1| methyltransferase [Culex quinquefasciatus]
          Length = 215

 Score = 35.8 bits (81), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 21  PKKYMGQNFL---LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           PK Y+ Q      +  + L  I  + G L+   V+++G GPG L+     LGA+ V+ IE
Sbjct: 22  PKVYLEQYVTPSHIAAHALYTIETNYGDLENKLVLDLGCGPGMLSIGAALLGAQHVVGIE 81

Query: 78  KDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            D     + ++ +       ++ +Q D L +D    ++I     ++ N P+  GT+
Sbjct: 82  IDLDAIKVFQENVQGFELENVDCVQWDVLNLD--GLYDILKFDTVLMNPPF--GTK 133


>gi|195977274|ref|YP_002122518.1| adenine-specific methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195973979|gb|ACG61505.1| adenine-specific methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 317

 Score = 35.8 bits (81), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQ 92
           I+  I E+  S + + V+EIG+G GNL Q +L    + +  + IE D     +   I+  
Sbjct: 97  IMLYILETLSSQESLDVLEIGSGTGNLAQTILNHSHKSIDYLGIELDDLLIDLSASIAEI 156

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +  + IQ+DA++    K  ++     II++LP
Sbjct: 157 MGSSAQFIQEDAVRPQLLKESDL-----IISDLP 185


>gi|324998303|ref|ZP_08119415.1| rRNA (adenine-N(6)-)-methyltransferase [Pseudonocardia sp. P1]
          Length = 294

 Score = 35.4 bits (80), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D  +   +A  +       ++E+GAG G LT  LL LG R V  +E D      
Sbjct: 17  GQNFLADPAVPAALAAVAAGWPPRPLLELGAGDGALTAALLDLG-RPVTAVELDPYR--- 72

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
              +  +    +++   D ++    +  +      +++N+PY + T LL   ++A    P
Sbjct: 73  ASRLGERFGTAVDVRHGDLVREPLGRAVD------VVSNVPYALTTPLLRRLLAA----P 122

Query: 146 FWESLTLLFQKEVGERITA 164
            W    LL Q EV  +  A
Sbjct: 123 RWGHALLLLQWEVARKRAA 141


>gi|163803827|ref|ZP_02197677.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4]
 gi|159172370|gb|EDP57247.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4]
          Length = 295

 Score = 35.4 bits (80), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99
            S  L G TVI+ G G G L    + LGA KVI I+ D Q     +D + ++   ++LE+
Sbjct: 154 ESKDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQASRDNAERNGVADQLEV 213

Query: 100 I----QDDALKVDFEKFFNISSPIRIIA 123
                Q + L  D      ++ P+R +A
Sbjct: 214 YLPQNQPEGLLADVVVANILAGPLRELA 241


>gi|297717878|gb|ADI50082.1| S-adenosyl-methyltransferase MraW [Candidatus Odyssella
           thessalonicensis L13]
          Length = 314

 Score = 35.4 bits (80), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 36/67 (53%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +LK++ E+    DG   I+   G G  T+ +L     +VI +++D +     + + +Q+P
Sbjct: 6   LLKEMQEALAIRDGALYIDATFGGGGYTRAILEQANCQVIAVDRDPEAIQRAEQLKAQYP 65

Query: 95  NRLEIIQ 101
           +RL + Q
Sbjct: 66  DRLFVFQ 72


>gi|325290428|ref|YP_004266609.1| methyltransferase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965829|gb|ADY56608.1| methyltransferase [Syntrophobotulus glycolicus DSM 8271]
          Length = 186

 Score = 35.4 bits (80), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
          V+++ AG GNL    L+ GA+KV+++EKD   + I+KD
Sbjct: 45 VLDLFAGTGNLGLEALSRGAQKVVLVEKDPMAWNIIKD 82


>gi|262392969|ref|YP_003284823.1| ribosomal protein L11 methyltransferase [Vibrio sp. Ex25]
 gi|262336563|gb|ACY50358.1| ribosomal protein L11 methyltransferase [Vibrio sp. Ex25]
          Length = 295

 Score = 35.4 bits (80), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99
            S  L G TVI+ G G G L    + LGA KVI I+ D Q     KD + ++   ++LE+
Sbjct: 154 ESMDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAERNGVADKLEV 213

Query: 100 I----QDDALKVDFEKFFNISSPIRIIA 123
                Q + L  D      ++ P+R +A
Sbjct: 214 YLPQNQPEGLIADVVVANILAGPLRELA 241


>gi|312878182|ref|ZP_07738111.1| Methyltransferase type 11 [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795046|gb|EFR11446.1| Methyltransferase type 11 [Caldicellulosiruptor lactoaceticus 6A]
          Length = 199

 Score = 35.4 bits (80), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 17/89 (19%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIV--------IEKDQQFFPIL 86
           LKKI + +   +G TV+++G G G L   LL  +G    IV        IEK +Q F   
Sbjct: 25  LKKIIDMTDIKEGDTVLDVGCGTGVLEGYLLKKVGKSGKIVAVDISEKMIEKAKQKF--- 81

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNI 115
           KD S+     +  +  DAL +DFE++F++
Sbjct: 82  KDASN-----ITFLCADALCLDFEEYFDV 105


>gi|325278138|ref|ZP_08143648.1| peptidase M22 glycoprotease [Pseudomonas sp. TJI-51]
 gi|324096737|gb|EGB95073.1| peptidase M22 glycoprotease [Pseudomonas sp. TJI-51]
          Length = 224

 Score = 35.4 bits (80), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           + SHY++IP+  M    LL + I + +A+S  +L+ +  I  G GPG  T + + +G  +
Sbjct: 24  VTSHYEVIPR--MHAQKLLPM-IKQLLADSGVALNALDAIAFGRGPGAFTGVRIAIGVVQ 80

Query: 73  VIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVD 108
            +    ++   P+    + +Q   R + +Q  A  +D
Sbjct: 81  GLAFALERPVLPVSNLAALAQGALREQGVQQVAAAID 117


>gi|194336451|ref|YP_002018245.1| phospholipid N-methyltransferase [Pelodictyon phaeoclathratiforme
          BU-1]
 gi|194308928|gb|ACF43628.1| phospholipid N-methyltransferase [Pelodictyon phaeoclathratiforme
          BU-1]
          Length = 179

 Score = 35.4 bits (80), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 10/62 (16%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-------FPILKDI 89
          K + +S   LD   VIEIGAG G +T+ + +L     +++E DQ+F       FP LK +
Sbjct: 37 KAMFKSIKELDDTAVIEIGAGTGAITKHISSLNP---LLVEIDQEFCAVLRKNFPHLKTV 93

Query: 90 SS 91
          +S
Sbjct: 94 NS 95


>gi|308188308|ref|YP_003932439.1| ribosomal protein L11 methyltransferase [Pantoea vagans C9-1]
 gi|308058818|gb|ADO10990.1| ribosomal protein L11 methyltransferase [Pantoea vagans C9-1]
          Length = 293

 Score = 35.4 bits (80), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII-- 100
            L+G TVI+ G G G L    L LGA + I I+ D Q     +D + ++   +RL +   
Sbjct: 156 DLEGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQASRDNAKRNGVSDRLSLYLP 215

Query: 101 --QDDALKVDFEKFFNISSPIRIIANL 125
             Q D L+ D      ++ P+R +A L
Sbjct: 216 HQQPDNLQADVVVANILAGPLRELAPL 242


>gi|288904317|ref|YP_003429538.1| hypothetical protein GALLO_0094 [Streptococcus gallolyticus UCN34]
 gi|306830347|ref|ZP_07463517.1| adenine-specific methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325977312|ref|YP_004287028.1| site-specific DNA-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731042|emb|CBI12586.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|304427372|gb|EFM30474.1| adenine-specific methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325177240|emb|CBZ47284.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 318

 Score = 35.4 bits (80), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           D I ++EIG+G GNL Q LL   ++++  + IE D     +   I+    +  + IQ+DA
Sbjct: 109 DKIDLLEIGSGTGNLAQTLLNNSSKELNYLGIEVDDLLIDLSASIAEVMDSDAQFIQEDA 168

Query: 105 LKVDFEKFFNISSPIRIIANLP 126
           ++    K  ++     II++LP
Sbjct: 169 VRPQILKESDV-----IISDLP 185


>gi|295681385|ref|YP_003609959.1| NLPA lipoprotein [Burkholderia sp. CCGE1002]
 gi|295441280|gb|ADG20448.1| NLPA lipoprotein [Burkholderia sp. CCGE1002]
          Length = 275

 Score = 35.4 bits (80), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           HY+I+P   +G  ++  + +  +  +S  +L     I +   P N  + LL L A  +I 
Sbjct: 99  HYQIVP---VGYTYVQPIGLYSRKVKSVAALPQNATIGVPNDPSNEGRALLLLQANGLIK 155

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           +  D +  P  +DI+  +P  ++I + DA
Sbjct: 156 LRPDVRLLPTARDIAD-NPKHIQIKELDA 183


>gi|307721507|ref|YP_003892647.1| methyltransferase [Sulfurimonas autotrophica DSM 16294]
 gi|306979600|gb|ADN09635.1| methyltransferase [Sulfurimonas autotrophica DSM 16294]
          Length = 199

 Score = 35.4 bits (80), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAES----------SGSLDGITVIEIGAGPGNLTQMLLT 67
           KII  KY G+  LL      + ++S             +     +E+ +G G++    L+
Sbjct: 9   KIIAGKYKGKTLLLPSKTTTRSSKSIVLESFFNTLQFDIVDANFVEVFSGSGSIGLEALS 68

Query: 68  LGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDAL 105
            GA+K+  +EKD      LK +I+   PN  E+   D+ 
Sbjct: 69  RGAKKIYFMEKDSNAVKTLKQNIAQTDPNACEVFAGDSF 107


>gi|224372530|ref|YP_002606902.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
 gi|223589616|gb|ACM93352.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
          Length = 192

 Score = 35.4 bits (80), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 11/103 (10%)

Query: 15  SHYKIIPKKYMGQNFLLD--------LNILKKIAESS--GSLDGITVIEIGAGPGNLTQM 64
           S+ KII  KY G+   +          NILK+   ++    +   T +E+ +G G++   
Sbjct: 4   SNIKIIGGKYRGKKLYMGDKEVTRSTKNILKESVFNTLQWEVPDSTWVEMFSGVGSIGLE 63

Query: 65  LLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALK 106
            ++ GA+K   +EKD +   +L K+I S  P + EII  D+ +
Sbjct: 64  AISRGAKKAYFLEKDPEAARVLKKNIDSMDPEKCEIILGDSFE 106


Searching..................................................done


Results from round 2




>gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040075|gb|ACT56871.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 284

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN
Sbjct: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR
Sbjct: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW
Sbjct: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS
Sbjct: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284
           LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI
Sbjct: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284


>gi|15888443|ref|NP_354124.1| dimethyladenosine transferase [Agrobacterium tumefaciens str. C58]
 gi|27151578|sp|Q8UGD5|RSMA_AGRT5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|15156135|gb|AAK86909.1| rRNA-adenine N6,N6-dimethyltransferase [Agrobacterium tumefaciens
           str. C58]
          Length = 276

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 146/276 (52%), Positives = 198/276 (71%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  KK +GQNFL DLN+ +KIA ++G LDG+TVIE+G GPG 
Sbjct: 1   MAAIDGLPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L+LGA+KVI +E+D +  P+L +I + +P RLE+I+ DALK DFE       P+R
Sbjct: 61  LTRAILSLGAKKVIAVERDSRCLPVLAEIEAHYPGRLEVIEGDALKTDFEALVPAGEPVR 120

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW S+TL+FQKEVG+RI A++   HYGRL VL GW
Sbjct: 121 IIANLPYNVGTQLLVNWLLPREWPPFWLSMTLMFQKEVGQRIVAEEGDNHYGRLGVLAGW 180

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT + M FD+ P  F P PKVTSTV+H +P   P+PC +  L+++T+ AFG+RRK LRQS
Sbjct: 181 RTVSEMAFDVPPQAFSPPPKVTSTVVHLLPKDKPLPCDVAKLERVTEAAFGQRRKMLRQS 240

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +K LGGE LL +AGI+   RAE LS+E+F  + N L
Sbjct: 241 VKSLGGETLLEKAGIDPTRRAETLSVEEFVTLANCL 276


>gi|315122190|ref|YP_004062679.1| dimethyladenosine transferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495592|gb|ADR52191.1| dimethyladenosine transferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 283

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 217/283 (76%), Positives = 249/283 (87%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   NK +SLK ILS Y I+P K MGQNFL D+N+LKKIA +SGSL+G+T IEIG GPGN
Sbjct: 1   MISKNKKNSLKNILSRYDIVPHKNMGQNFLFDINLLKKIATTSGSLNGVTAIEIGPGPGN 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LTQ+LL LGA+KVIV+EKD QF PIL +IS Q+PNRLEIIQ DALK+DF++  +I +PIR
Sbjct: 61  LTQILLELGAQKVIVVEKDPQFLPILNNISLQYPNRLEIIQGDALKIDFKELSHIPAPIR 120

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           II+NLPYNIGTRLLFNWI++ TWPPFWESLTLLFQKEVG+RITAQKN PHYGRLS+LT W
Sbjct: 121 IISNLPYNIGTRLLFNWITSSTWPPFWESLTLLFQKEVGKRITAQKNDPHYGRLSILTSW 180

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKA +MFDI PHVFFP PK+TSTV+HF PHLNPIPCCLESLKKITQEAFGKRRKTLRQS
Sbjct: 181 RTKAKIMFDIPPHVFFPKPKITSTVVHFTPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           LK L GENLL QAGIE++LRAENLSIEDFCRITNI ++N +++
Sbjct: 241 LKPLEGENLLRQAGIESSLRAENLSIEDFCRITNIFSENNNVS 283


>gi|325292482|ref|YP_004278346.1| dimethyladenosine transferase [Agrobacterium sp. H13-3]
 gi|325060335|gb|ADY64026.1| dimethyladenosine transferase [Agrobacterium sp. H13-3]
          Length = 276

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 148/276 (53%), Positives = 197/276 (71%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  KK +GQNFL DLN+ +KIA ++G LDG+TVIE+G GPG 
Sbjct: 1   MAAIDGLPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L+LGA+KVI IE+D +  P L +I + +P RLE+I+ DALK DFE       P+R
Sbjct: 61  LTRAILSLGAKKVIAIERDSRCLPALAEIEAHYPGRLEVIEGDALKTDFEALVPAGEPVR 120

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW S+TL+FQKEVG+RI A++   HYGRL VL GW
Sbjct: 121 IIANLPYNVGTQLLVNWLLPKEWPPFWLSMTLMFQKEVGQRIVAEEGDNHYGRLGVLAGW 180

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT + M FD+ P  F P PKVTSTV+H +P   P+PC +  L+K+T+ AFG+RRK LRQS
Sbjct: 181 RTVSEMAFDVPPQAFSPPPKVTSTVVHLLPKEKPLPCDVAKLEKVTEAAFGQRRKMLRQS 240

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +K LGGE LL +AGI+   RAE LS+E+F  + N L
Sbjct: 241 VKSLGGEVLLEKAGIDATRRAETLSVEEFVTLANCL 276


>gi|307317707|ref|ZP_07597145.1| dimethyladenosine transferase [Sinorhizobium meliloti AK83]
 gi|306896469|gb|EFN27217.1| dimethyladenosine transferase [Sinorhizobium meliloti AK83]
          Length = 274

 Score =  351 bits (900), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 151/276 (54%), Positives = 197/276 (71%), Gaps = 2/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGA+KV+ IE+D +  P L +I + +P RL+II+ DALKVDFE       P+R
Sbjct: 61  LTRAILALGAKKVVAIERDSRCLPALAEIGAHYPGRLDIIEGDALKVDFEALA--GGPVR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+S+TL+FQ+EVG RI A  +  HYGRL VL GW
Sbjct: 119 IIANLPYNVGTQLLVNWLLPGHWPPFWQSMTLMFQREVGLRIVAGADDDHYGRLGVLCGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKA + FD+ P  F P PKVTSTV+H  P   PIPC    L+K+TQ AFG+RRK LRQS
Sbjct: 179 RTKARLAFDVPPQAFTPPPKVTSTVVHLEPVEAPIPCSPAVLEKVTQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE LL +AGI+   RAE L++E+FCR+ N L
Sbjct: 239 LKPLGGEALLAKAGIDPQRRAETLTVEEFCRLANCL 274


>gi|218673561|ref|ZP_03523230.1| dimethyladenosine transferase [Rhizobium etli GR56]
          Length = 275

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 155/276 (56%), Positives = 202/276 (73%), Gaps = 1/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G+L+  TVIE+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEETTVIEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGARKVI IE+D +  P L +I+  +P RLE+I+ DALK DFE       P++
Sbjct: 61  LTRAILALGARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAPEG-PVK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GW
Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLCGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A M FD+SP  F P PKVTSTV+H  P  NPIPC + +L+K+TQ AFG+RRK LRQS
Sbjct: 180 RTEARMAFDVSPQAFTPPPKVTSTVVHLTPRENPIPCSVANLEKVTQAAFGQRRKMLRQS 239

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE+LL +AGI+   RAE LS+E+FC + N L
Sbjct: 240 LKPLGGESLLVKAGIDPARRAETLSVEEFCLLANSL 275


>gi|150395984|ref|YP_001326451.1| dimethyladenosine transferase [Sinorhizobium medicae WSM419]
 gi|166221706|sp|A6U7I6|RSMA_SINMW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|150027499|gb|ABR59616.1| dimethyladenosine transferase [Sinorhizobium medicae WSM419]
          Length = 274

 Score =  350 bits (898), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 151/276 (54%), Positives = 200/276 (72%), Gaps = 2/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  KK +GQNFLLDLN+ +KIA ++G L+G+TVIE+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEGVTVIEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGA+KV+ IE+D +  P L +I + +P RL++++ DALKVDFE   +   P+R
Sbjct: 61  LTRAILALGAKKVVAIERDSRCLPALAEIGAHYPERLDVVEGDALKVDFEALAD--GPVR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+S+TL+FQ+EVG RI A  +  HYGRL VL GW
Sbjct: 119 IIANLPYNVGTQLLVNWLLPGRWPPFWQSMTLMFQREVGLRIVASPDDDHYGRLGVLCGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKA++ FD+ P  F P PKVTSTV+H  P   PIPC    L+K+TQ AFG+RRK LRQS
Sbjct: 179 RTKASLAFDVPPQAFTPPPKVTSTVVHLEPIEVPIPCSPAVLEKVTQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE LL +AGI+   RAE LS+E+FCR+ N L
Sbjct: 239 LKPLGGEALLAKAGIDPKRRAETLSVEEFCRLANCL 274


>gi|227821471|ref|YP_002825441.1| dimethyladenosine transferase [Sinorhizobium fredii NGR234]
 gi|254807879|sp|C3M9C2|RSMA_RHISN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|227340470|gb|ACP24688.1| dimethyladenosine transferase [Sinorhizobium fredii NGR234]
          Length = 296

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 150/276 (54%), Positives = 202/276 (73%), Gaps = 2/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGARKV+ IE+D +  P L +IS+ +P RL++++ DALKVDFE+      P+R
Sbjct: 61  LTRAILALGARKVVAIERDPRCLPALAEISAHYPGRLDVVEGDALKVDFERLAE--GPVR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+  + WPPFW+S+TL+ Q+EVG RI A  +  HYGRL VL GW
Sbjct: 119 IIANLPYNVGTQLLVNWLLPERWPPFWQSMTLMIQREVGLRIVAGADDDHYGRLGVLCGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKA + FD+ P  F P PKVTSTV+H  P  NPIPC + +L+K+TQ AFG+RRK LRQS
Sbjct: 179 RTKARLAFDVPPQAFTPPPKVTSTVVHLEPIDNPIPCAVSALEKVTQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK +GGE LL +AGI+   RAE L++E+FCR+ N L
Sbjct: 239 LKSIGGEALLGKAGIDPQRRAETLTVEEFCRLANCL 274


>gi|15964902|ref|NP_385255.1| dimethyladenosine transferase [Sinorhizobium meliloti 1021]
 gi|307300972|ref|ZP_07580741.1| dimethyladenosine transferase [Sinorhizobium meliloti BL225C]
 gi|27151590|sp|Q92QZ1|RSMA_RHIME RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|15074081|emb|CAC45728.1| Putative dimethyladenosine transferase [Sinorhizobium meliloti
           1021]
 gi|306903927|gb|EFN34513.1| dimethyladenosine transferase [Sinorhizobium meliloti BL225C]
          Length = 274

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 152/276 (55%), Positives = 199/276 (72%), Gaps = 2/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  KK +GQNFLLDLN+ +KIA ++G L+ +TVIE+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGA+KV+ IE+D +  P L +I + +P RL+II+DDALKVDFE   +   P+R
Sbjct: 61  LTRAILALGAKKVVAIERDSRCLPALAEIGAHYPGRLDIIEDDALKVDFEALAD--GPVR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+S+TL+FQ+EVG RI A  +  HYGRL VL GW
Sbjct: 119 IIANLPYNVGTQLLVNWLLPGLWPPFWQSMTLMFQREVGLRIVAGADDDHYGRLGVLCGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKA + FD+ P  F P PKVTSTV+H  P   PIPC    L+K+TQ AFG+RRK LRQS
Sbjct: 179 RTKARLAFDVPPQAFTPPPKVTSTVVHLEPVEAPIPCSPAVLEKVTQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE LL +AGI+   RAE L++E+FCR+ N L
Sbjct: 239 LKPLGGEALLAKAGIDPQRRAETLTVEEFCRLANCL 274


>gi|319784428|ref|YP_004143904.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170316|gb|ADV13854.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 279

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 139/280 (49%), Positives = 190/280 (67%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT+ +    L+ ++  + +  KK +GQNFLLDLN+  KIA ++G L   TVIE+G GPG 
Sbjct: 1   MTI-DGLPPLREVIERHGLQAKKALGQNFLLDLNLTGKIARTAGDLSDATVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----IS 116
           LT+ LL  GAR+VI IE+D++    L ++S  +P RLE++  DALK DF           
Sbjct: 60  LTRALLANGARQVIAIERDERCLAALAEVSGHYPGRLEVVSGDALKTDFTGLAGRATGNG 119

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P++I+ANLPYNIGT LL  W++   WPPF+ S+TL+FQ+EV ERI A   S  YGRL V
Sbjct: 120 GPVKIVANLPYNIGTELLVRWLTVSDWPPFYTSMTLMFQREVAERIVAPAGSDSYGRLGV 179

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           L GWRT+A + FD+ P  F P PKVTS+V+H +P   P+P  ++ L ++T+ AFG+RRK 
Sbjct: 180 LAGWRTEARIAFDVPPQAFTPPPKVTSSVVHLVPRPMPLPTEVKKLGRVTEAAFGQRRKM 239

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LRQS+K LGGE LL +AGI+   RAE LS+E+F R+TN +
Sbjct: 240 LRQSVKSLGGEALLDRAGIDPTRRAETLSVEEFVRLTNAV 279


>gi|241203944|ref|YP_002975040.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857834|gb|ACS55501.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 275

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 153/276 (55%), Positives = 202/276 (73%), Gaps = 1/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G+LD  T++E+G GPG 
Sbjct: 1   MAPLDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGTLDEATIVEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGARKVI IE+D +  P L +I+  +P RLE+I+ DALK+DFE       P++
Sbjct: 61  LTRAILALGARKVIAIERDPRCLPALAEIADHYPGRLEVIEGDALKIDFETLVPEG-PVK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GW
Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A M FD+ P  F P PKVTSTV+H IP   PIPC + +L+K+TQ AFG+RRK LRQS
Sbjct: 180 RTEARMAFDVPPQAFTPPPKVTSTVVHLIPRDTPIPCAVANLEKVTQAAFGQRRKMLRQS 239

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE+LL +AGI+   RAE LS+E+FC + N L
Sbjct: 240 LKPLGGESLLVKAGIDPARRAETLSVEEFCLLANSL 275


>gi|222085448|ref|YP_002543978.1| dimethyladenosine transferase [Agrobacterium radiobacter K84]
 gi|221722896|gb|ACM26052.1| dimethyladenosine transferase [Agrobacterium radiobacter K84]
          Length = 276

 Score =  344 bits (884), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 153/276 (55%), Positives = 201/276 (72%), Gaps = 1/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  +K +GQNFLLDLN+ +K+A ++GSL+G+TV E+G GPG 
Sbjct: 2   MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGSLEGVTVFEVGPGPGG 61

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGA KVI IE+D +  P L +I+  +P RLE+I+ DALK DF    +   P++
Sbjct: 62  LTRAILALGAAKVIAIERDARCLPALAEIADHYPGRLEVIEGDALKTDFAGMASEG-PVK 120

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVG+RI A ++  HYGRL VL GW
Sbjct: 121 IIANLPYNVGTQLLVNWLLPGHWPPFWQSLTLMFQKEVGQRIVADEDDDHYGRLGVLCGW 180

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A M FDISP  F P PKVTSTV+H  P  NPIPC ++ L+K+TQ AFG+RRK LRQS
Sbjct: 181 RTQAHMAFDISPQAFSPPPKVTSTVVHLTPRENPIPCSVDKLEKVTQAAFGQRRKMLRQS 240

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE LL +A I+   RAE LS+E+FCR+ N L
Sbjct: 241 LKPLGGETLLQKADIDPQRRAETLSVEEFCRLANCL 276


>gi|209548666|ref|YP_002280583.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226732614|sp|B5ZWD8|RSMA_RHILW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|209534422|gb|ACI54357.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 275

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 151/276 (54%), Positives = 197/276 (71%), Gaps = 1/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G+L+  T+ E+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEEATIFEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGARKVI +E+D +  P L +I+  +P RLE+I+ DALK DFE       PI+
Sbjct: 61  LTRAILALGARKVIAVERDTRCLPALAEIADHYPGRLEVIEGDALKTDFEALA-PDGPIK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GW
Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVASEDDDHYGRLGVLCGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+  M FD+ P  F P PKVTSTV+H  P  NPIPC +  L+K+TQ AFG+RRK LRQS
Sbjct: 180 RTQTRMAFDVPPQAFTPPPKVTSTVVHLTPRENPIPCAVGDLEKVTQAAFGQRRKMLRQS 239

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE LL +AGI+   RAE LS+E+FC + N L
Sbjct: 240 LKPLGGERLLVKAGIDPARRAETLSVEEFCLLANSL 275


>gi|116251330|ref|YP_767168.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|118600891|sp|Q1MJ01|RSMA_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115255978|emb|CAK07059.1| putative dimethyladenosine transferase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 275

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 152/276 (55%), Positives = 198/276 (71%), Gaps = 1/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G+L+  TV E+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEDATVFEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGARKVI IE+D +  P L +I+  +P RLE+I+ DALK DFE       PI+
Sbjct: 61  LTRAILALGARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFETLAPQG-PIK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GW
Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A M FD+ P  F P PKVTSTV+   P  NPIPC + +L+K+TQ AFG+RRK LRQS
Sbjct: 180 RTEARMAFDVPPQAFTPPPKVTSTVVQLTPRENPIPCAVSNLEKVTQAAFGQRRKMLRQS 239

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE LL +AGI+   RAE LS+++FC + N L
Sbjct: 240 LKPLGGERLLVKAGIDPARRAETLSVKEFCLLANSL 275


>gi|327188008|gb|EGE55238.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Rhizobium etli CNPAF512]
          Length = 275

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 151/276 (54%), Positives = 201/276 (72%), Gaps = 1/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGA+KV+ +E+D +  P L +I+  +P RLE+I+ DALK DFE       P++
Sbjct: 61  LTRAILALGAKKVVAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFESQAPEG-PVK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GW
Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVANEDDDHYGRLGVLCGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKA M FD+ P  F P PKVTSTV+H  P  NPIPC + +L+K+TQ AFG+RRK LRQS
Sbjct: 180 RTKARMAFDVPPQAFTPPPKVTSTVVHLTPRENPIPCSVANLEKVTQAAFGQRRKMLRQS 239

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE+LL +AGI+   RAE LS+E+FC + N L
Sbjct: 240 LKPLGGESLLVKAGIDPARRAETLSVEEFCLLANSL 275


>gi|190891131|ref|YP_001977673.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Rhizobium etli CIAT 652]
 gi|218515820|ref|ZP_03512660.1| dimethyladenosine transferase [Rhizobium etli 8C-3]
 gi|226732613|sp|B3PUU6|RSMA_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|190696410|gb|ACE90495.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Rhizobium etli CIAT 652]
          Length = 275

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 150/276 (54%), Positives = 201/276 (72%), Gaps = 1/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGA+KVI +E+D +  P L +I+  +P RLE+I+ DALK DFE      + ++
Sbjct: 61  LTRAILALGAKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKADFESLAPEGA-VK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GW
Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATEDDDHYGRLGVLCGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A M FD+ P  F P PKVTSTV+H  P  NPIPC + +L+K+TQ AFG+RRK LRQS
Sbjct: 180 RTEARMAFDVPPQAFTPPPKVTSTVVHLTPRKNPIPCSVANLEKVTQAAFGQRRKMLRQS 239

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE+LL +AGI+   RAE LS+E+FC + N L
Sbjct: 240 LKPLGGESLLVKAGIDPARRAETLSVEEFCLLANSL 275


>gi|260466951|ref|ZP_05813133.1| dimethyladenosine transferase [Mesorhizobium opportunistum WSM2075]
 gi|259029248|gb|EEW30542.1| dimethyladenosine transferase [Mesorhizobium opportunistum WSM2075]
          Length = 274

 Score =  342 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 138/276 (50%), Positives = 191/276 (69%), Gaps = 2/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  +++  KK +GQNFLLDLN+  KIA ++G L   T+IE+G GPG 
Sbjct: 1   MSI-DGLPPLRDVIERHELQAKKALGQNFLLDLNLTSKIARAAGDLTNTTIIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+VI IE+D++    L ++S  +P RLEII  DALK DF       +P +
Sbjct: 60  LTRALLFNGARRVIAIERDERCLAALAEVSEHYPGRLEIIAGDALKTDFAALA-AGAPTK 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNIGT LL  W++   WPPF+ S+TL+FQ+EV +RI A   S  YGRL VL GW
Sbjct: 119 IVANLPYNIGTELLIRWLTVTDWPPFYASMTLMFQREVAQRIVAAPGSDAYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKVTS+V+H  P   P+P  ++ L ++T+ AFG+RRK LRQS
Sbjct: 179 RTQARIAFDVPPQAFTPPPKVTSSVVHLEPRATPLPADVKKLGRVTEAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +K LGGE LL +AGI+   RAE LS+E+F R+TN++
Sbjct: 239 VKSLGGETLLERAGIDPTRRAETLSVEEFVRLTNLV 274


>gi|110634113|ref|YP_674321.1| dimethyladenosine transferase [Mesorhizobium sp. BNC1]
 gi|118600875|sp|Q11HG9|RSMA_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|110285097|gb|ABG63156.1| dimethyladenosine transferase [Chelativorans sp. BNC1]
          Length = 275

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 133/276 (48%), Positives = 192/276 (69%), Gaps = 1/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+M +    L+ ++  + +  +K +GQNFLLDLN+ ++IA ++G LD  TV+E+G GPG 
Sbjct: 1   MSM-DGLPPLRDVIERHGLFARKALGQNFLLDLNLTRRIARTAGGLDNATVLEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IE+D++    L++I++ +P RLEI+  DA+K DF      S  ++
Sbjct: 60  LTRALLMEGARRVVAIERDERCIAALEEIAAHYPGRLEIVAGDAMKADFAALAGNSGDVK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNIGT LL  W++  TWPPF+ES+TL+FQ+EV ERI A+  S HYGRL VL GW
Sbjct: 120 IVANLPYNIGTELLIRWLTPQTWPPFYESMTLMFQREVAERIVAKPGSSHYGRLGVLAGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKV S+V+  +P  +P+   +  L + T+ AFG+RRK LRQS
Sbjct: 180 RTEARIAFDVPPQAFTPPPKVISSVVKIVPRADPLTVEVGRLARTTEAAFGQRRKMLRQS 239

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L+ +GGE LL +AGI+   RAE LS+E+F R+   +
Sbjct: 240 LRSVGGEALLEKAGIDGTRRAETLSVEEFVRLAREI 275


>gi|86357087|ref|YP_468979.1| dimethyladenosine transferase [Rhizobium etli CFN 42]
 gi|119365052|sp|Q2KA84|RSMA_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|86281189|gb|ABC90252.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Rhizobium etli CFN 42]
          Length = 275

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 148/276 (53%), Positives = 199/276 (72%), Gaps = 1/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  +K +GQNFLLDLN+ +K+A ++G+L+  TV E+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGALEETTVFEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGA+KVI +E+D +  P L +I+  +P RLE+I+ DALK DFE       P++
Sbjct: 61  LTRAILALGAKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFEALAPEG-PVK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GW
Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLCGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT A M FD+ P  F P PKVTSTV+H +P  NP+ C + +L+K+TQ AFG+RRK LRQS
Sbjct: 180 RTDARMAFDVPPQAFTPPPKVTSTVVHLLPRENPVQCAVANLEKVTQAAFGQRRKMLRQS 239

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE+LL +AGI+   RAE LS+E+FC + N L
Sbjct: 240 LKPLGGESLLVKAGIDPARRAETLSVEEFCLLANNL 275


>gi|222148148|ref|YP_002549105.1| dimethyladenosine transferase [Agrobacterium vitis S4]
 gi|254807854|sp|B9JUV4|RSMA_AGRVS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|221735136|gb|ACM36099.1| rRNA-adenine N6N6-dimethyltransferase [Agrobacterium vitis S4]
          Length = 275

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 153/276 (55%), Positives = 198/276 (71%), Gaps = 1/276 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  KK +GQNFLLDLNI +K+A ++G L   TV E+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNITQKVARTAGDLTNATVFEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL LGA+KVI IE+D +  P L +IS  +P RLE+I+ DALK DFE       P++
Sbjct: 61  LTRALLALGAKKVIAIERDSRCLPALAEISDHYPGRLEVIEGDALKTDFEAMA-PDGPVK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVG+RI A+ +  HYGRL VL GW
Sbjct: 120 IVANLPYNVGTQLLINWLMPRQWPPFWDSLTLMFQKEVGQRIVAEADDDHYGRLGVLCGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A M FD+SP  F P PKVTSTV+H  P   PIPC +  L+K+TQ AFG+RRK LR S
Sbjct: 180 RTEAHMAFDLSPQAFTPPPKVTSTVVHLTPRPAPIPCEIAKLEKLTQAAFGQRRKMLRAS 239

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LGGE LL++A I+ + RAE LS+E+FCRI N+L
Sbjct: 240 LKPLGGEALLNRAEIDPSRRAETLSVEEFCRIANLL 275


>gi|62289644|ref|YP_221437.1| dimethyladenosine transferase [Brucella abortus bv. 1 str. 9-941]
 gi|81309439|sp|Q57E58|RSMA_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62195776|gb|AAX74076.1| KsgA, dimethyladenosine transferase [Brucella abortus bv. 1 str.
           9-941]
          Length = 276

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 136/275 (49%), Positives = 184/275 (66%), Gaps = 2/275 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG 
Sbjct: 1   MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKV S+V+H +P   P+PC  E+L +ITQ AFG+RRK LRQS
Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK +GG  LL + GI+   RAE LS+E+F  + N 
Sbjct: 239 LKSIGGAALLEKMGIDGTRRAETLSVEEFVALANA 273


>gi|23501569|ref|NP_697696.1| dimethyladenosine transferase [Brucella suis 1330]
 gi|82699572|ref|YP_414146.1| dimethyladenosine transferase [Brucella melitensis biovar Abortus
           2308]
 gi|148560508|ref|YP_001258664.1| dimethyladenosine transferase [Brucella ovis ATCC 25840]
 gi|161618651|ref|YP_001592538.1| dimethyladenosine transferase [Brucella canis ATCC 23365]
 gi|189023894|ref|YP_001934662.1| dimethyladenosine transferase [Brucella abortus S19]
 gi|225627179|ref|ZP_03785217.1| dimethyladenosine transferase [Brucella ceti str. Cudo]
 gi|225852202|ref|YP_002732435.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457]
 gi|237815135|ref|ZP_04594133.1| dimethyladenosine transferase [Brucella abortus str. 2308 A]
 gi|254688954|ref|ZP_05152208.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870]
 gi|254693436|ref|ZP_05155264.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya]
 gi|254697088|ref|ZP_05158916.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701465|ref|ZP_05163293.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513]
 gi|254704012|ref|ZP_05165840.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686]
 gi|254707614|ref|ZP_05169442.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10]
 gi|254709803|ref|ZP_05171614.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
 gi|254713807|ref|ZP_05175618.1| dimethyladenosine transferase [Brucella ceti M644/93/1]
 gi|254717135|ref|ZP_05178946.1| dimethyladenosine transferase [Brucella ceti M13/05/1]
 gi|254729984|ref|ZP_05188562.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292]
 gi|256031294|ref|ZP_05444908.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1]
 gi|256113218|ref|ZP_05454086.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159408|ref|ZP_05457186.1| dimethyladenosine transferase [Brucella ceti M490/95/1]
 gi|256254702|ref|ZP_05460238.1| dimethyladenosine transferase [Brucella ceti B1/94]
 gi|256257202|ref|ZP_05462738.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68]
 gi|256264290|ref|ZP_05466822.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369117|ref|YP_003106625.1| dimethyladenosine transferase [Brucella microti CCM 4915]
 gi|260168433|ref|ZP_05755244.1| dimethyladenosine transferase [Brucella sp. F5/99]
 gi|260545604|ref|ZP_05821345.1| dimethyladenosine transferase [Brucella abortus NCTC 8038]
 gi|260566739|ref|ZP_05837209.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40]
 gi|260754443|ref|ZP_05866791.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870]
 gi|260757662|ref|ZP_05870010.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292]
 gi|260761489|ref|ZP_05873832.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883472|ref|ZP_05895086.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68]
 gi|261213689|ref|ZP_05927970.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya]
 gi|261218950|ref|ZP_05933231.1| dimethyladenosine transferase [Brucella ceti M13/05/1]
 gi|261221882|ref|ZP_05936163.1| dimethyladenosine transferase [Brucella ceti B1/94]
 gi|261315104|ref|ZP_05954301.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10]
 gi|261317341|ref|ZP_05956538.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
 gi|261321551|ref|ZP_05960748.1| dimethyladenosine transferase [Brucella ceti M644/93/1]
 gi|261752008|ref|ZP_05995717.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513]
 gi|261754667|ref|ZP_05998376.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686]
 gi|261757895|ref|ZP_06001604.1| dimethyladenosine transferase [Brucella sp. F5/99]
 gi|265988379|ref|ZP_06100936.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1]
 gi|265994629|ref|ZP_06107186.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|265997845|ref|ZP_06110402.1| dimethyladenosine transferase [Brucella ceti M490/95/1]
 gi|297248052|ref|ZP_06931770.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196]
 gi|33516941|sp|Q8G1N0|RSMA_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122064285|sp|Q2YN15|RSMA_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221650|sp|A5VPL7|RSMA_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028802|sp|A9MA55|RSMA_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729760|sp|B2S4U1|RSMA_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807862|sp|C0RI23|RSMA_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|23347481|gb|AAN29611.1| dimethyladenosine transferase [Brucella suis 1330]
 gi|82615673|emb|CAJ10660.1| SAM (and some other nucleotide) binding motif:Ribosomal RNA adenine
           dimethylase [Brucella melitensis biovar Abortus 2308]
 gi|148371765|gb|ABQ61744.1| dimethyladenosine transferase [Brucella ovis ATCC 25840]
 gi|161335462|gb|ABX61767.1| dimethyladenosine transferase [Brucella canis ATCC 23365]
 gi|189019466|gb|ACD72188.1| SAM (and some other nucleotide) binding motif [Brucella abortus
           S19]
 gi|225618014|gb|EEH15058.1| dimethyladenosine transferase [Brucella ceti str. Cudo]
 gi|225640567|gb|ACO00481.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457]
 gi|237789972|gb|EEP64182.1| dimethyladenosine transferase [Brucella abortus str. 2308 A]
 gi|255999277|gb|ACU47676.1| dimethyladenosine transferase [Brucella microti CCM 4915]
 gi|260097011|gb|EEW80886.1| dimethyladenosine transferase [Brucella abortus NCTC 8038]
 gi|260156257|gb|EEW91337.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40]
 gi|260667980|gb|EEX54920.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292]
 gi|260671921|gb|EEX58742.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674551|gb|EEX61372.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870]
 gi|260873000|gb|EEX80069.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68]
 gi|260915296|gb|EEX82157.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya]
 gi|260920466|gb|EEX87119.1| dimethyladenosine transferase [Brucella ceti B1/94]
 gi|260924039|gb|EEX90607.1| dimethyladenosine transferase [Brucella ceti M13/05/1]
 gi|261294241|gb|EEX97737.1| dimethyladenosine transferase [Brucella ceti M644/93/1]
 gi|261296564|gb|EEY00061.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
 gi|261304130|gb|EEY07627.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10]
 gi|261737879|gb|EEY25875.1| dimethyladenosine transferase [Brucella sp. F5/99]
 gi|261741761|gb|EEY29687.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513]
 gi|261744420|gb|EEY32346.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686]
 gi|262552313|gb|EEZ08303.1| dimethyladenosine transferase [Brucella ceti M490/95/1]
 gi|262765742|gb|EEZ11531.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094550|gb|EEZ18359.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264660576|gb|EEZ30837.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1]
 gi|297175221|gb|EFH34568.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196]
 gi|326408701|gb|ADZ65766.1| SAM (and some other nucleotide) binding motif protein [Brucella
           melitensis M28]
 gi|326538425|gb|ADZ86640.1| dimethyladenosine transferase [Brucella melitensis M5-90]
          Length = 276

 Score =  338 bits (867), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 136/275 (49%), Positives = 184/275 (66%), Gaps = 2/275 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG 
Sbjct: 1   MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKV S+V+H +P   P+PC  E+L +ITQ AFG+RRK LRQS
Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK +GG  LL + GI+   RAE LS+E+F  + N 
Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALANA 273


>gi|306845283|ref|ZP_07477859.1| dimethyladenosine transferase [Brucella sp. BO1]
 gi|306274442|gb|EFM56249.1| dimethyladenosine transferase [Brucella sp. BO1]
          Length = 276

 Score =  337 bits (865), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 2/275 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG 
Sbjct: 1   MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKV S+V+H +P   P+PC  E L +ITQ AFG+RRK LRQS
Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEKLGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK +GG  LL + GI+   RAE LS+E+F  + N 
Sbjct: 239 LKSVGGAALLEKTGIDGTRRAETLSVEEFVALANA 273


>gi|163842952|ref|YP_001627356.1| dimethyladenosine transferase [Brucella suis ATCC 23445]
 gi|189028803|sp|B0CL06|RSMA_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|163673675|gb|ABY37786.1| dimethyladenosine transferase [Brucella suis ATCC 23445]
          Length = 276

 Score =  337 bits (865), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 136/275 (49%), Positives = 184/275 (66%), Gaps = 2/275 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG 
Sbjct: 1   MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKV S+V+H +P   P+PC  E+L +ITQ AFG+RRK LRQS
Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK +GG  LL + GI+   RAE LS+E+F  + N 
Sbjct: 239 LKSIGGGALLEKTGIDGTRRAETLSVEEFVALANA 273


>gi|306842053|ref|ZP_07474726.1| dimethyladenosine transferase [Brucella sp. BO2]
 gi|306287894|gb|EFM59314.1| dimethyladenosine transferase [Brucella sp. BO2]
          Length = 276

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 2/275 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG 
Sbjct: 1   MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPEPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKV S+V+H +P   P+PC  E L +ITQ AFG+RRK LRQS
Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEKLGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK +GG  LL + GI+   RAE LS+E+F  + N 
Sbjct: 239 LKSVGGAALLEKTGIDGTRRAETLSVEEFVALANA 273


>gi|254718818|ref|ZP_05180629.1| dimethyladenosine transferase [Brucella sp. 83/13]
 gi|265983803|ref|ZP_06096538.1| dimethyladenosine transferase [Brucella sp. 83/13]
 gi|306838740|ref|ZP_07471574.1| dimethyladenosine transferase [Brucella sp. NF 2653]
 gi|264662395|gb|EEZ32656.1| dimethyladenosine transferase [Brucella sp. 83/13]
 gi|306406142|gb|EFM62387.1| dimethyladenosine transferase [Brucella sp. NF 2653]
          Length = 276

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 137/275 (49%), Positives = 183/275 (66%), Gaps = 2/275 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+++N    L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG 
Sbjct: 1   MSIDN-LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ EV ERI A+ +S HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQCEVAERIVAKPDSDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKV S+V+H +P   P+PC  E L +ITQ AFG+RRK LRQS
Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPREAPLPCRAEKLGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK +GG  LL + GI+   RAE LS+E+F  + N 
Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALANA 273


>gi|256060807|ref|ZP_05450967.1| dimethyladenosine transferase [Brucella neotomae 5K33]
 gi|261324799|ref|ZP_05963996.1| dimethyladenosine transferase [Brucella neotomae 5K33]
 gi|261300779|gb|EEY04276.1| dimethyladenosine transferase [Brucella neotomae 5K33]
          Length = 276

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 135/275 (49%), Positives = 182/275 (66%), Gaps = 2/275 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG 
Sbjct: 1   MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGAY-VTAIERDDRCLEALTEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S  YGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDRYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKV S+V+H +P   P PC  E+L +ITQ AFG+RRK LRQS
Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPPPCRAEALGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK +GG  LL + GI+   RAE LS+E+F  + N 
Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALANA 273


>gi|13476521|ref|NP_108091.1| dimethyladenosine transferase [Mesorhizobium loti MAFF303099]
 gi|27151594|sp|Q984S7|RSMA_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|14027282|dbj|BAB54236.1| dimethyladenosine transferase [Mesorhizobium loti MAFF303099]
          Length = 279

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 137/280 (48%), Positives = 192/280 (68%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + +  KK +GQNFLLDLN+  KIA S+G L    VIE+G GPG 
Sbjct: 1   MSI-DGLPPLRDVIERHGLQAKKALGQNFLLDLNLTGKIARSAGDLTNTAVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--- 117
           LT+ LL+ GAR+V+ IE+D++    L ++S+ +P RLE++  DALK DF    + +    
Sbjct: 60  LTRALLSNGARRVVAIERDERCLAALAEVSAHYPGRLEVVSGDALKTDFAALASAAGGAS 119

Query: 118 -PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +RI+ANLPYNIGT LL  W++   WPPF+ S+TL+FQ+EV +RI A+  S  YGRL V
Sbjct: 120 GQVRIVANLPYNIGTELLVRWLTVVDWPPFYASMTLMFQREVAQRIVAEPGSDAYGRLGV 179

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           L GWRTKA + FD+ P  F P PKVTS+V+H  P   P+P  ++ L ++T+ AFG+RRK 
Sbjct: 180 LAGWRTKARIAFDVPPQAFTPPPKVTSSVVHLEPRATPLPADVKKLGRVTEAAFGQRRKM 239

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LRQS+K LGGE LL +AGI+   RAE LS+E+F R+TN +
Sbjct: 240 LRQSVKSLGGEALLERAGIDPTRRAETLSVEEFVRLTNSV 279


>gi|294852044|ref|ZP_06792717.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026]
 gi|294820633|gb|EFG37632.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026]
          Length = 276

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 135/275 (49%), Positives = 183/275 (66%), Gaps = 2/275 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + ++PKK +GQNFL DLN+  KI   +G L    VIE+G GPG 
Sbjct: 1   MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKITRQAGDLRDQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIVGDALEQDFTALFPEGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKPDSDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKV S+V+H +P   P+PC  E+L +ITQ AFG+RRK LRQS
Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK +GG  LL + GI+   RAE LS+E+F  + N 
Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALANA 273


>gi|17987550|ref|NP_540184.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|256044375|ref|ZP_05447279.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260563727|ref|ZP_05834213.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|265990793|ref|ZP_06103350.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|27151583|sp|Q8YG94|RSMA_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|17983253|gb|AAL52448.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|260153743|gb|EEW88835.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|263001577|gb|EEZ14152.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 276

 Score =  334 bits (858), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 136/275 (49%), Positives = 184/275 (66%), Gaps = 2/275 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + ++PKK +GQNFL DLN+  KIA  +G L    VIE+G GPG 
Sbjct: 1   MSI-DSLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D +    L +I++ +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGAY-VTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A+ +S HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKLDSDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A + FD+ P  F P PKV S+V+H +P   P+PC  E+L +ITQ AFG+RRK LRQS
Sbjct: 179 RTQAKIAFDVPPQAFTPPPKVMSSVVHIVPRETPLPCRAEALGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK +GG  LL + GI+   RAE LS+E+F  + N 
Sbjct: 239 LKSIGGAALLEKTGIDGTRRAETLSVEEFVALANA 273


>gi|307946738|ref|ZP_07662073.1| dimethyladenosine transferase [Roseibium sp. TrichSKD4]
 gi|307770402|gb|EFO29628.1| dimethyladenosine transferase [Roseibium sp. TrichSKD4]
          Length = 280

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 148/281 (52%), Positives = 192/281 (68%), Gaps = 3/281 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ + +  KK +GQNFLLDLN+  +IA S+G L+G+TV+E+G GPG 
Sbjct: 1   MAQIDTLPPLREVIATHGLDAKKSLGQNFLLDLNLTSRIARSAGDLNGVTVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L  GA +VI IEKD +  P L +IS+ +  +LE+I +DALK+D      IS PI+
Sbjct: 61  LTRAILAAGADRVIAIEKDTRCLPALAEISNHYDGKLEVISEDALKIDPTSL-GISGPIK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NWI+ + WPPFW SLTLLFQKEVGERI A+  S  YGRL VL  W
Sbjct: 120 IIANLPYNVGTQLLINWITTENWPPFWTSLTLLFQKEVGERIVAKPGSKAYGRLGVLASW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R ++ M+FDI P  F P PKVTS V+H +P  +P+PC L  L+KIT  AFG+RRK LR S
Sbjct: 180 RCQSGMLFDIGPQAFTPPPKVTSAVVHLVPTHSPLPCDLNILEKITAAAFGQRRKMLRAS 239

Query: 241 LKRLG--GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           LK LG   E LL  AGIE   RAE + +E F RI N    +
Sbjct: 240 LKSLGKPPEPLLETAGIEPTTRAEQVDVEGFVRIANAYAAS 280


>gi|153009933|ref|YP_001371148.1| dimethyladenosine transferase [Ochrobactrum anthropi ATCC 49188]
 gi|166221683|sp|A6X265|RSMA_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|151561821|gb|ABS15319.1| dimethyladenosine transferase [Ochrobactrum anthropi ATCC 49188]
          Length = 278

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 136/277 (49%), Positives = 183/277 (66%), Gaps = 2/277 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + ++PKK +GQNFL DLN+  KIA  +G+L    VIE+G GPG 
Sbjct: 1   MSI-DGLPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGNLQDQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D++    L +I + +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGAY-VTAIERDERCLDALAEIEAHYPGRLRIISGDALEQDFSALFPDGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A  +S HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVATPDSDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT + + FD+ P  F P PKV S+V+H IP  NP+PC   +L +ITQ AFG+RRK LRQS
Sbjct: 179 RTVSKISFDVPPQAFTPPPKVMSSVVHIIPRENPLPCNANALGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LK +GG  LL + GI+   RAE LS+E+F  + N   
Sbjct: 239 LKPVGGAELLEKTGIDGTRRAETLSVEEFVALANAYR 275


>gi|304392010|ref|ZP_07373952.1| dimethyladenosine transferase [Ahrensia sp. R2A130]
 gi|303296239|gb|EFL90597.1| dimethyladenosine transferase [Ahrensia sp. R2A130]
          Length = 279

 Score =  331 bits (850), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 131/277 (47%), Positives = 180/277 (64%), Gaps = 3/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  +++  KK +GQNFLLDLNI  KIA ++G L   TV+EIG GPG 
Sbjct: 1   MSHIDDLPPLREVIDRHELATKKSLGQNFLLDLNITMKIARAAGDLTRHTVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           LT+ LL  GA+ V+ IE+D +  P+L +IS  +P RL +I+ DAL ++ E+       S 
Sbjct: 61  LTRALLASGAKHVVAIERDARCIPVLAEISDAYPGRLTVIEGDALALNHEQVLADAGASG 120

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P++I ANLPYNI T L   WI+   WPPFW  +TL+FQ+EV +RI A+     +GRL VL
Sbjct: 121 PVKIAANLPYNIATPLFTGWITGTNWPPFWNGMTLMFQREVAQRICAEPGDKAWGRLGVL 180

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
            GWR+ A + FD+SP  F+P PKVTS+V+   P   P+P  +  L+KITQ AFG+RRK L
Sbjct: 181 AGWRSHADIAFDLSPQAFWPPPKVTSSVVMVQPRAEPLPVAVSDLEKITQAAFGQRRKML 240

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           RQSLK + G + L   GIE   RAE L++EDF  + N
Sbjct: 241 RQSLKSMNGASRLEATGIEGTKRAEELAVEDFVALAN 277


>gi|154246772|ref|YP_001417730.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2]
 gi|226732642|sp|A7IJ80|RSMA_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|154160857|gb|ABS68073.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2]
          Length = 288

 Score =  331 bits (849), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 139/285 (48%), Positives = 189/285 (66%), Gaps = 3/285 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+  +IA +SG L+G TV+E+G GPG 
Sbjct: 1   MSALDDLPPLRDVIRRHGLSAQKSLGQNFLLDLNLTGRIARASGPLEGATVVEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL LGAR+VI IE+DQ+    L ++S  +P RLE+I  DALKVD          +R
Sbjct: 61  LTRALLALGARRVIAIERDQRCLDALAEVSDHYPGRLEVISGDALKVDVRPLVGDGE-VR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYNI T LL  W+S D WPP++ SLTL+FQKEV ERI A   S  YGRL+VL GW
Sbjct: 120 VVANLPYNIATLLLIGWLSTDPWPPWFSSLTLMFQKEVAERIVAAPGSKAYGRLAVLAGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT A + FD++P  F P PKVTS+V+H +P   P+PC L +L+K+T+ AFG+RRK LRQS
Sbjct: 180 RTTARIAFDVAPSAFVPPPKVTSSVVHLVPRSEPLPCALSALEKVTEAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           LK LG +   LL   G+E   RAE + ++ F R+ N     +  A
Sbjct: 240 LKSLGVDTAALLKATGVEETARAEEIDVDGFVRLANTFAQLKSGA 284


>gi|163759131|ref|ZP_02166217.1| dimethyladenosine transferase [Hoeflea phototrophica DFL-43]
 gi|162283535|gb|EDQ33820.1| dimethyladenosine transferase [Hoeflea phototrophica DFL-43]
          Length = 276

 Score =  331 bits (849), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 135/272 (49%), Positives = 190/272 (69%), Gaps = 1/272 (0%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L+ I++ Y + P+K +GQNFL DLN+  KIA ++G L+G T+ EIG GPG LT+ 
Sbjct: 6   DGLPPLRDIVATYGLAPRKALGQNFLFDLNLTGKIARAAGPLEGFTIFEIGPGPGGLTRA 65

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL  GA +V+ IE+DQ+  P+L++IS+ +P +LE+++ DAL VD       +   +I+AN
Sbjct: 66  LLEQGAERVVAIERDQRCLPVLEEISAHYPGKLEVVEADALDVDLAALAGGAP-AKIVAN 124

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+GT+LL NW++ +   PFW S+TL+FQKEVG+RI A   S H+GRL VL GW T A
Sbjct: 125 LPYNVGTQLLINWLTVNPKAPFWTSMTLMFQKEVGQRIIAAPGSNHFGRLGVLAGWLTHA 184

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            ++FD+ P  F P PKVTS+V+  +P  +P+PC L  L+++TQ AFG+RRK LRQSLK L
Sbjct: 185 DILFDVPPQAFTPPPKVTSSVVQLVPRADPLPCELAKLERVTQAAFGQRRKMLRQSLKPL 244

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           GGE LL   GI+   RAE LS+E+FC +   +
Sbjct: 245 GGEALLESVGIDPARRAETLSVEEFCALARAI 276


>gi|90419497|ref|ZP_01227407.1| dimethyladenosine transferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336434|gb|EAS50175.1| dimethyladenosine transferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 279

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 138/278 (49%), Positives = 186/278 (66%), Gaps = 2/278 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +L  + + PK+ +GQNFLLDLN+  +IA  +  L+G T++EIG GPG 
Sbjct: 1   MSPIDSLPPLRAVLEEHGLDPKRSLGQNFLLDLNLTGRIARQALPLEGATIVEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP 118
           LT+ LL  GA  V+V+EKD +  P L+ I++ +P RL+I + DAL  D  +    + +  
Sbjct: 61  LTRALLAEGASHVVVVEKDSRCIPALEAIAAHYPGRLDIRRADALDFDLAEVAHPDGADA 120

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++I+ANLPYN+GT+LL NWI+   WPP W SLTL+FQ+EV ERI A   S HYGRL VL 
Sbjct: 121 LKIVANLPYNVGTQLLLNWIATPQWPPVWSSLTLMFQREVAERIVAVPGSKHYGRLGVLA 180

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
           GWRT+A ++FD+ P  F P PKVTS+VI   P   P P  L +L+++T  AFG+RRK LR
Sbjct: 181 GWRTQAKILFDVPPEAFTPPPKVTSSVIQLRPRAEPEPASLAALERVTATAFGQRRKMLR 240

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           QSLK LGGE LL  A I+   RAE LSI +F R+ N L
Sbjct: 241 QSLKSLGGEALLVAADIDPQRRAETLSISEFVRLANGL 278


>gi|239831516|ref|ZP_04679845.1| dimethyladenosine transferase [Ochrobactrum intermedium LMG 3301]
 gi|239823783|gb|EEQ95351.1| dimethyladenosine transferase [Ochrobactrum intermedium LMG 3301]
          Length = 278

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 136/277 (49%), Positives = 184/277 (66%), Gaps = 2/277 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+++N    L+ ++  + ++PKK +GQNFL DLN+  KIA  +GSL    VIE+G GPG 
Sbjct: 1   MSIDN-LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGSLQEQPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  V  IE+D++    L +I + +P RL II  DAL+ DF   F      R
Sbjct: 60  LTRALLAQGAY-VTAIERDERCLDALAEIEAHYPGRLRIISGDALEQDFSALFPDGPKPR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+  + WPPF+ S+TL+FQ+EV ERI A  ++ HYGRL VL GW
Sbjct: 119 IVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVATPDTDHYGRLGVLAGW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT + + FD+ P  F P PKV S+V+H IP  +P+PC   +L +ITQ AFG+RRK LRQS
Sbjct: 179 RTVSKISFDVPPQAFTPPPKVMSSVVHIIPREDPLPCDANALGQITQAAFGQRRKMLRQS 238

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LK +GG  LL + GI+   RAE LS+E+F  + N   
Sbjct: 239 LKPVGGAELLAKTGIDGTRRAETLSVEEFVALANAYR 275


>gi|158425944|ref|YP_001527236.1| dimethyladenosine transferase [Azorhizobium caulinodans ORS 571]
 gi|172047844|sp|A8HVI9|RSMA_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|158332833|dbj|BAF90318.1| rRNA 16S rRNA dimethylase [Azorhizobium caulinodans ORS 571]
          Length = 291

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 137/278 (49%), Positives = 191/278 (68%), Gaps = 3/278 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+  +IA  SG L+G TV+E+G GPG 
Sbjct: 1   MSAIDDLPPLREVIRAHGLSAQKSLGQNFLLDLNLTARIARGSGPLEGATVVEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL LGARKVI IE+D +    L +I++ +P RLEII+ DALKVD     + +   R
Sbjct: 61  LTRALLALGARKVIAIERDHRCIAALNEIAAAYPGRLEIIEGDALKVDVRPHLDGAE-AR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+GT+LL  W+S D WPP++ SLTL+FQ+EV ERI A  +S  YGRL+VLTGW
Sbjct: 120 VVANLPYNVGTQLLVGWLSTDPWPPWFSSLTLMFQREVAERIVAGPDSKAYGRLAVLTGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +A ++FD++P  F P PKVTS+VIH +P   P+PC L  L+++T+ AFG+RRK LRQS
Sbjct: 180 RAQARILFDVAPSAFVPPPKVTSSVIHVVPRAEPVPCALRDLERVTEAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK LG +   LL + GI+   RAE + +  F  + N  
Sbjct: 240 LKSLGVDPLALLSETGIDETARAEEIDVAGFLALANAF 277


>gi|328544016|ref|YP_004304125.1| ribosomal RNA small subunit methyltransferase A [polymorphum gilvum
           SL003B-26A1]
 gi|326413760|gb|ADZ70823.1| Ribosomal RNA small subunit methyltransferase A [Polymorphum gilvum
           SL003B-26A1]
          Length = 283

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 130/279 (46%), Positives = 183/279 (65%), Gaps = 3/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+  +IA ++  LD  TV+EIG GPG 
Sbjct: 1   MSRIDDLPPLREVIRAHGLDARKSLGQNFLLDLNLTSRIARAAAPLDACTVVEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA +VI IEKD++  P L +I+ ++P RL +++ DAL++D         P++
Sbjct: 61  LTRALLAAGAGRVIAIEKDRRCLPALAEIADRYPGRLTVVEGDALEIDAATLA-AGEPVK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NWI+   WPPFW SLTL+FQ+EV ERI A      YGRL VL GW
Sbjct: 120 IVANLPYNVGTQLLINWITTPGWPPFWSSLTLMFQREVAERIVAAPGDKAYGRLGVLAGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+A ++FDISP  F P PKVTS V+  +P + P+PC L++L+++T  AFG+RRK LR S
Sbjct: 180 RTQARILFDISPQAFTPPPKVTSAVVQLVPRVEPLPCSLKALERVTAAAFGQRRKMLRAS 239

Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LK L    E L+ +AG+    RAE + I  F  +     
Sbjct: 240 LKTLDPQAERLIEEAGLIPTARAEEIDIAGFVALAERFA 278


>gi|254504321|ref|ZP_05116472.1| dimethyladenosine transferase [Labrenzia alexandrii DFL-11]
 gi|222440392|gb|EEE47071.1| dimethyladenosine transferase [Labrenzia alexandrii DFL-11]
          Length = 283

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 139/278 (50%), Positives = 183/278 (65%), Gaps = 3/278 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ + +  KK +GQNFLLDLN+  +IA S+GSL+  T++EIG GPG 
Sbjct: 1   MAQIDDLPPLRDVIAAHGLNAKKSLGQNFLLDLNLTSRIARSAGSLEDHTILEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA+KV+ IEKD +  P L +I+  +P RLE+I+ DAL++D          +R
Sbjct: 61  LTRALLAAGAKKVVAIEKDSRCLPALAEIAYHYPGRLEVIEGDALEIDPVAITG-GGKVR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT+LL NWI+   WPPFW SLTL+FQKEVGERI A   S  YGRL VL GW
Sbjct: 120 IAANLPYNVGTQLLINWITTPDWPPFWSSLTLMFQKEVGERIAAAPGSKAYGRLGVLAGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R    ++FDISP  F P PKVTS V+H  P+  P+PC L SL+K+T  AFG+RRK LR S
Sbjct: 180 RCNGGILFDISPKAFTPPPKVTSAVVHLTPNPAPLPCNLSSLEKLTAAAFGQRRKMLRAS 239

Query: 241 LKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK L    E L+ +AG++   RAE + I  F  + N  
Sbjct: 240 LKSLSPDAERLIEKAGLKPTARAEEIDIAGFVNLANTF 277


>gi|114766148|ref|ZP_01445152.1| dimethyladenosine transferase [Pelagibaca bermudensis HTCC2601]
 gi|114541608|gb|EAU44650.1| dimethyladenosine transferase [Roseovarius sp. HTCC2601]
          Length = 278

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 128/280 (45%), Positives = 179/280 (63%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  KK +GQNFLLDLN+  KIA  +G L G+ V+EIG GPG 
Sbjct: 1   MSAIDGLPPLREVIASHDLSAKKSLGQNFLLDLNLTAKIARQAGDLSGMDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GARKV+ IEKD +  P L +I+  +P+RLE+I  DAL++D     +++ PI 
Sbjct: 61  LTRGLLAEGARKVLAIEKDTRCLPALAEIAGAYPDRLEVISGDALQID--PLAHLTPPIA 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++ + WPPFW++LTL+FQ+EV ERI AQ  S  YGRL+VL  W
Sbjct: 119 ICANLPYNVGTELLVRWLTPEDWPPFWQTLTLMFQREVAERIVAQPGSKAYGRLAVLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           RT+A ++  + P  F P PKV+S V+H      P  P    +L+++   AF +RRK LR 
Sbjct: 179 RTEARIVLSLPPGAFTPPPKVSSAVMHLRALPEPRFPAERAALERVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK L    E+ L  AGI    RAE +S+E FC +   L 
Sbjct: 239 ALKGLAPDIEDRLEAAGIAPTERAEQVSLEQFCALARALA 278


>gi|119383648|ref|YP_914704.1| dimethyladenosine transferase [Paracoccus denitrificans PD1222]
 gi|166221685|sp|A1B0G4|RSMA_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119373415|gb|ABL69008.1| dimethyladenosine transferase [Paracoccus denitrificans PD1222]
          Length = 282

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 130/280 (46%), Positives = 175/280 (62%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  KK +GQNFLLDLN+  KIA ++G L G  VIE+G GPG 
Sbjct: 1   MSAIDGLPPLREVIARHDLRAKKQLGQNFLLDLNLTAKIARAAGDLTGCDVIEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR V+ IEKD +  P L +I++ +P RLE+I  DAL++D     +++ PIR
Sbjct: 61  LTRGLLAEGARHVLAIEKDARALPALAEIATAYPGRLEVIHGDALEID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W++   WPPFW+SLTL+FQKEV ERI AQ     YGRL+VL  W
Sbjct: 119 IVANLPYNVGTELLIRWLTPAAWPPFWQSLTLMFQKEVAERIVAQPGGKAYGRLAVLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           RT+A ++  + P  F P+PKV S V+H      P  P     L ++    F +RRK LR 
Sbjct: 179 RTEARIVMTLPPEAFVPAPKVHSAVVHLTALPGPRYPADPAVLNRVVAAGFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L    E LL QAGI    RAE + +E FC +   L 
Sbjct: 239 SLKGLHPEIEALLIQAGIAPTARAEEIGLEQFCALARGLA 278


>gi|114704784|ref|ZP_01437692.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Fulvimarina pelagi HTCC2506]
 gi|114539569|gb|EAU42689.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
           [Fulvimarina pelagi HTCC2506]
          Length = 277

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 140/275 (50%), Positives = 190/275 (69%), Gaps = 1/275 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  ++   L+T+++ + ++P+K +GQNFLLDLN+  KIA  +  L+   V+E+G GPG 
Sbjct: 1   MSTIDELPPLRTVIAEHDLVPRKQLGQNFLLDLNLTSKIARQAAPLEDCIVVEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA +V+  EKD +  P+L+DI+ ++P RLE+ Q DAL +D E        ++
Sbjct: 61  LTRALLANGASRVVAAEKDPRCVPVLEDIAKRYPGRLEVRQMDALDLDVESIAE-DRTLK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT+LL NW+S + WPP W+SLTL+FQKEV ERI A  +S HYGRL+VL G 
Sbjct: 120 IVANLPYNVGTQLLVNWLSVEAWPPRWQSLTLMFQKEVAERIVALPSSSHYGRLAVLAGC 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKA ++FDI    F P PKVTS V+   P   P+P  L +L+K+T  AFG+RRK LRQS
Sbjct: 180 RTKARILFDIPRQAFTPPPKVTSAVVQLTPRDAPLPVSLAALEKVTLTAFGQRRKMLRQS 239

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK LGGE LL+  GI+   RAE LSIE+F  I N 
Sbjct: 240 LKPLGGEALLNAVGIDPQRRAETLSIEEFVAIANA 274


>gi|83952311|ref|ZP_00961043.1| dimethyladenosine transferase [Roseovarius nubinhibens ISM]
 gi|83837317|gb|EAP76614.1| dimethyladenosine transferase [Roseovarius nubinhibens ISM]
          Length = 280

 Score =  325 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 125/280 (44%), Positives = 184/280 (65%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + ++ +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MSTIDNLPPLRQVINDHDLVARKSLGQNFLLDLNLTAKIARQAGDLSTADVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L +I++ +P RLE+I  DAL+VD     +++ PI 
Sbjct: 61  LTRGLLAEGARRVLAIEKDSRCLPALAEIAAAYPGRLEVINGDALEVD--PLAHLTPPIH 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERITA+  S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPQEWPPFWQSLTLMFQREVAERITAKPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +A ++  + P  F P+PKV+S V+H      P  P   + L+++  +AF +RRK LR 
Sbjct: 179 RAEARIVMSLPPEAFTPAPKVSSAVVHLRALPEPRFPADPKMLERVVAQAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK +    E+ L+ AGIE   RAE LS+E+FC +  +++
Sbjct: 239 ALKSMAPDIEDRLNAAGIEPTRRAETLSLEEFCALARVMS 278


>gi|154253780|ref|YP_001414604.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1]
 gi|154157730|gb|ABS64947.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1]
          Length = 281

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 126/277 (45%), Positives = 180/277 (64%), Gaps = 5/277 (1%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               L+ +++ Y + P+K +GQNFLLDLN+  +IA ++G LDG  V+E+G GPG LT+ L
Sbjct: 7   PLPPLREVIARYGLAPQKSLGQNFLLDLNLTGRIARAAGVLDGYDVVEVGPGPGGLTRAL 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L  GAR+VI IE+D++    L++IS+ +P RL I++ DAL+VD +    ++SP RI+ANL
Sbjct: 67  LDNGARRVIAIERDRRCIAALEEISAAYPGRLVIVEGDALEVDMKSL--VTSPARIVANL 124

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+GT LL  W+  + WP +++SLTL+FQ+EV ERI AQ     YGRL+VL  WR KA 
Sbjct: 125 PYNVGTPLLVGWLQTEPWPAWFDSLTLMFQREVAERIVAQPGGKAYGRLAVLAQWRAKAQ 184

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           ++FD+    F P P VTS+V+  IP   P+       L+ +   AFG+RRK LR SL+ L
Sbjct: 185 ILFDVDRRAFTPPPSVTSSVVELIPRAVPLAEANPRVLEAVVAAAFGQRRKMLRSSLRTL 244

Query: 245 GGEN--LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              +  LL +AGI+   RAE LS+E FC +     + 
Sbjct: 245 TPHSLPLLEKAGIDPTQRAEELSVEQFCALARAFAEK 281


>gi|118588149|ref|ZP_01545559.1| dimethyladenosine transferase [Stappia aggregata IAM 12614]
 gi|118439771|gb|EAV46402.1| dimethyladenosine transferase [Stappia aggregata IAM 12614]
          Length = 274

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 140/275 (50%), Positives = 189/275 (68%), Gaps = 3/275 (1%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +++ + +  KK +GQNFLLDLN+  +IA S+GSL+  TV+E+G GPG LT+ LL  G
Sbjct: 1   MRDVIAEHGLNAKKSLGQNFLLDLNLTSRIARSAGSLEDCTVLEVGPGPGGLTRALLAAG 60

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++VI IEKD +  P L +IS+ +P RLE+I+ DAL++D          +RI ANLPYN+
Sbjct: 61  AKRVIAIEKDSRCLPALAEISAHYPGRLEVIEGDALEIDPVALTG-GDKVRIAANLPYNV 119

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT+LL NWI+   WPPFW SLTL+FQKEVGERI+A   S  YGRL+VL GWR K  ++FD
Sbjct: 120 GTQLLINWITTPDWPPFWSSLTLMFQKEVGERISASPGSKAYGRLAVLAGWRCKGGILFD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GE 247
           ISP  F P PKVTS V+H  P+ +P+PC L++L+KIT  AFG+RRK LR SLK L    E
Sbjct: 180 ISPKAFTPPPKVTSAVVHLEPNASPLPCDLKALEKITAAAFGQRRKMLRASLKSLSADAE 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            L+ +AG++   RAE + I  F  + N     Q +
Sbjct: 240 ELVTKAGLKPTARAEEIDIAGFVDLANTFRAAQAV 274


>gi|159043734|ref|YP_001532528.1| dimethyladenosine transferase [Dinoroseobacter shibae DFL 12]
 gi|189028806|sp|A8LI73|RSMA_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157911494|gb|ABV92927.1| dimethyladenosine transferase [Dinoroseobacter shibae DFL 12]
          Length = 280

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 127/280 (45%), Positives = 173/280 (61%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ +K+  KK +GQNFLLDLN+  +IA   G L G  V+E+G GPG 
Sbjct: 1   MAQIDGLPPLREVIAAHKLSAKKSLGQNFLLDLNLTARIARVPGDLSGADVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GARKV+ IEKD +  P L+ I++ +P RLE+I+ DAL+VD   +   S PI 
Sbjct: 61  LTRGLLAEGARKVLAIEKDARCLPALQQIAAAYPGRLEVIEGDALEVDATAYL--SPPIH 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW +LTL+FQ+EV ERI A+  S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPPDWPPFWRTLTLMFQREVAERIVAKPGSKAYGRLAILAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +A +   + P  F P+PKV S V+H      P  P     L ++   AF +RRK LR 
Sbjct: 179 RAEAEIALTLPPQAFIPAPKVHSAVVHLRARTEPRYPADAAVLSRVVATAFNQRRKMLRA 238

Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L  G E+ L   GI+   RAE LS+E+FC +   + 
Sbjct: 239 SLKGLTPGIEDHLAAVGIDPTRRAETLSLEEFCALARQIA 278


>gi|163868023|ref|YP_001609227.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476]
 gi|189028801|sp|A9IRW8|RSMA_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|161017674|emb|CAK01232.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476]
          Length = 276

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 145/278 (52%), Positives = 194/278 (69%), Gaps = 3/278 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M ++N    L+ ++  Y +   K +GQNFL DLN+  KIA  +G+++G  V+EIG GPG 
Sbjct: 1   MPIDN-LPPLREVIDTYGLQAHKSLGQNFLFDLNLTSKIAHQAGTIEGKPVLEIGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119
           LT+ LL  GA  V  IE+D++  P L +I   +PN+L++I +DALK DF K F  S    
Sbjct: 60  LTRALLAKGA-IVTAIERDERCIPALLEIEKHYPNQLKLICNDALKQDFSKLFGSSPEKP 118

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RIIANLPYNIGT+LL NW+  + WPPF+ES+TL+FQ+EV +RITA+  S HYGRLSVLTG
Sbjct: 119 RIIANLPYNIGTQLLLNWLLVEPWPPFYESMTLMFQREVAKRITAKPQSSHYGRLSVLTG 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           WRT A + FD+ P  F P+PKVTS+V+H IP   P+ C  + L  IT+ AFG+RRK LRQ
Sbjct: 179 WRTIAKIAFDVPPQAFIPAPKVTSSVVHIIPRAQPLVCSAQKLSLITKTAFGQRRKMLRQ 238

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK LGGE +L +AGI+   RAE LSI +F  + N++T
Sbjct: 239 NLKTLGGEIILEKAGIDGTRRAETLSISEFVTLANLIT 276


>gi|99080785|ref|YP_612939.1| dimethyladenosine transferase [Ruegeria sp. TM1040]
 gi|118600897|sp|Q1GI39|RSMA_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|99037065|gb|ABF63677.1| dimethyladenosine transferase [Ruegeria sp. TM1040]
          Length = 280

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 128/280 (45%), Positives = 180/280 (64%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L G  V+EIG GPG 
Sbjct: 1   MSAIDNLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GARK++ IEKDQ+  P L+DI++ +P RLE+I  DAL++D     +++ PIR
Sbjct: 61  LTRGLLSEGARKILAIEKDQRCLPALEDIAAAYPGRLEVINGDALEID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  S  YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPKEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +A +   + P  F P PKV+S V+H      P  P     L ++   AF +RRK LR 
Sbjct: 179 RAEARIALSLPPGAFTPPPKVSSAVVHLTALPEPRYPADAAILSRVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +    E+ L+ AGI    RAE +S+EDFC +   L 
Sbjct: 239 SLKGVSPQIEDHLNAAGIPPTERAEQVSVEDFCALARSLE 278


>gi|259418690|ref|ZP_05742607.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B]
 gi|259344912|gb|EEW56766.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B]
          Length = 280

 Score =  325 bits (833), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 129/280 (46%), Positives = 177/280 (63%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L G  V+EIG GPG 
Sbjct: 1   MSAIDNLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GARKV+ IEKDQ+  P L +I+  HP RLE+I  DALK+D     +++ PIR
Sbjct: 61  LTRGLLSEGARKVLAIEKDQRCLPALAEIAEAHPGRLEVINGDALKID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  S  YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPKDWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +A +   + P  F P PKV+S V+H      P  P     L ++   AF +RRK LR 
Sbjct: 179 RAEAKIALSLPPGAFTPPPKVSSAVVHLTALPEPRFPADAAILSRVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +    E+ L+ AGI    RAE +S+E FC +   L 
Sbjct: 239 SLKGVSPQIEDHLNAAGIPPTERAEQVSLEGFCALARSLA 278


>gi|254473433|ref|ZP_05086830.1| dimethyladenosine transferase [Pseudovibrio sp. JE062]
 gi|211957549|gb|EEA92752.1| dimethyladenosine transferase [Pseudovibrio sp. JE062]
          Length = 279

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 125/281 (44%), Positives = 178/281 (63%), Gaps = 4/281 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ + +  +K +GQNFLLDLN+  +IA S+G L   TV+E+G GPG 
Sbjct: 1   MAQIDDLPPLREVIAEHGLDARKSLGQNFLLDLNLTSRIARSAGDLSDCTVVEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA+KVI IEKD +  P L  IS  +  +LE+I+ DALK +  +  +   PI+
Sbjct: 61  LTRALLAAGAKKVIAIEKDTRCLPALAQISEHYNGKLEVIEGDALKYNPAELAD--GPIK 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL  W++ + WPPFW SLTL+FQKEVG+RI A+     YGRL VL  W
Sbjct: 119 IIANLPYNVGTQLLLGWLTTEEWPPFWSSLTLMFQKEVGQRIVAETGDKAYGRLGVLANW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R    ++FD++P  F P PKVTS V+   P   P+ C L++L+++T  AFG+RRK LR S
Sbjct: 179 RCHTDILFDLNPKAFTPPPKVTSAVVQLHPREKPLDCPLKALERVTAHAFGQRRKMLRAS 238

Query: 241 LKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           LK L    E  +  AG++   RAE + +  F  + +    +
Sbjct: 239 LKGLKPNAEARIEAAGLKPTARAEEIDVTGFVALAHAFDKD 279


>gi|27379213|ref|NP_770742.1| dimethyladenosine transferase [Bradyrhizobium japonicum USDA 110]
 gi|33516930|sp|Q89MU0|RSMA_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|27352364|dbj|BAC49367.1| rRNA-adenine N6,N6-dimethyltransferase [Bradyrhizobium japonicum
           USDA 110]
          Length = 284

 Score =  321 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 124/280 (44%), Positives = 183/280 (65%), Gaps = 3/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+  +IA ++  LD  T++EIG GPG 
Sbjct: 1   MSAIDDLPPLREVIRQHALSARKSLGQNFLLDLNLTARIARAAAPLDNSTIVEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL LGAR+V+ IE D++  P L+DIS+++P RLEI+  DA+  D     N     +
Sbjct: 61  LTRALLALGARRVVAIEHDERAIPALQDISARYPGRLEIVHGDAMTFDPRPLLN-GESAK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T+LL NW++ + WPP+++ + L+FQ+EVGERI A+++   YGRL VL  W
Sbjct: 120 IVANLPYNIATQLLINWLTTEPWPPWYDMMVLMFQREVGERIVAREDEEAYGRLGVLANW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  ++FDI+P  F P PKVTS+V+  +P   P+PC  + L+++   AFG+RRK LRQS
Sbjct: 180 RCETKILFDIAPSAFVPPPKVTSSVVRLVPRAEPLPCDRKMLEQVAAAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK LG +   L   AG++   RAE + I  F  +   L D
Sbjct: 240 LKSLGVDPARLAQAAGVDATRRAETIPISGFVAMARELAD 279


>gi|299133709|ref|ZP_07026903.1| dimethyladenosine transferase [Afipia sp. 1NLS2]
 gi|298591545|gb|EFI51746.1| dimethyladenosine transferase [Afipia sp. 1NLS2]
          Length = 283

 Score =  321 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 127/280 (45%), Positives = 181/280 (64%), Gaps = 3/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  Y + P+K +GQNFL DLN+  +IA ++G LD  TVIEIG GPG 
Sbjct: 1   MSQIDDLPPLREVIRKYDLAPRKSLGQNFLFDLNLTARIARAAGPLDDATVIEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA++VI +E+D +  P L+DI+  +P RLEI+  DA+  D     +  +  R
Sbjct: 61  LTRALLATGAKRVIAVERDDRAIPALEDIARHYPGRLEIVHGDAIDFDPTTMLD-GARAR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W++AD WPP+++ + L+FQ+EV ERI AQ+N   YGRL VL  W
Sbjct: 120 IVANLPYNIATLLLTGWLTADPWPPWFDMMVLMFQREVAERIVAQENDDAYGRLGVLANW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RT+  ++FDI+P  F P PKVTS+V+  +P   P+ C   +L+++   AF +RRK LRQS
Sbjct: 180 RTETKILFDIAPGAFVPPPKVTSSVVRLVPRAKPLSCSRRALEQVAAAAFNQRRKMLRQS 239

Query: 241 LKRLGGENLL--HQAGIETNLRAENLSIEDFCRITNILTD 278
           LK LG +  L    A I+   RAE +SI  F  + N L++
Sbjct: 240 LKPLGVDPALLTEAARIDPTRRAETVSIAGFVAMANRLSE 279


>gi|254477153|ref|ZP_05090539.1| dimethyladenosine transferase [Ruegeria sp. R11]
 gi|214031396|gb|EEB72231.1| dimethyladenosine transferase [Ruegeria sp. R11]
          Length = 282

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 122/280 (43%), Positives = 176/280 (62%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  ++++ +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MSAIDSLPPLREVIETHQLLARKSLGQNFLLDLNLTAKIARQAGDLTDCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GARKV+ +EKD +  P L ++++ +P +LE+I+ DAL+V+     +++ PIR
Sbjct: 61  LTRGLLAEGARKVLAVEKDSRCIPALAEVAAAYPGKLEVIEGDALEVN--PLTHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  +  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAQPGTKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV S V+H      P  P    +L K+   AF +RRK LR 
Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLTALEEPRFPADPGTLNKVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +    E+ L+ AGI    RAE +S+E FC +   + 
Sbjct: 239 SLKSVSPDIEDHLNAAGIPPTERAEQVSLEAFCALARSVK 278


>gi|149914652|ref|ZP_01903182.1| dimethyladenosine transferase [Roseobacter sp. AzwK-3b]
 gi|149811445|gb|EDM71280.1| dimethyladenosine transferase [Roseobacter sp. AzwK-3b]
          Length = 279

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 120/281 (42%), Positives = 174/281 (61%), Gaps = 5/281 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  +K +GQNFLLDLN+  KIA ++G L G  V+EIG GPG 
Sbjct: 1   MSAIDTLPPLRDVIAQHGLSARKALGQNFLLDLNLTSKIARAAGDLTGSDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR V+ IEKD +  P L +I+  +P RL ++  DAL+VD     +++ PI+
Sbjct: 61  LTRGLLAEGARHVLAIEKDARCLPALDEIAQAYPGRLTVLNADALQVD--PLAHLTPPIK 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+GT LL  W++   WPP W+SLTL+FQ+EV ERI A   S  YGRL++L  W
Sbjct: 119 VVANLPYNVGTELLIRWLTPADWPPVWDSLTLMFQREVAERIVATPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +A ++  + P  F P PKV+S V+H      P  P     L+++  +AF +RRK LR 
Sbjct: 179 RCEARIVMHLPPSAFTPPPKVSSAVVHITALPEPRYPADPVLLERLVAKAFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +LK L    E+ L  AGI+   RAE + +E FC +   L  
Sbjct: 239 ALKGLAPDLEDRLLAAGIQPTDRAETVGLEQFCALARSLKS 279


>gi|115525299|ref|YP_782210.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53]
 gi|122295624|sp|Q07LF4|RSMA_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115519246|gb|ABJ07230.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53]
          Length = 287

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 124/280 (44%), Positives = 176/280 (62%), Gaps = 3/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+  +IA ++G L+  TVIE+G GPG 
Sbjct: 1   MSTIDDLPPLREVIQRHDLSARKSLGQNFLLDLNLTTRIARAAGPLEDSTVIEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL LGA++VI IE+D++    L +IS+ +P RL+I+  DA+  D        +  +
Sbjct: 61  LTRALLALGAKRVIAIERDERALGALAEISAHYPGRLDIVCADAMTYDPRPLLG-GARAK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+  D WPP+++ L L+FQ+EV ERI A ++   YGRL VL  W
Sbjct: 120 IVANLPYNIATPLLIGWLETDPWPPWYDCLVLMFQREVAERIVATEDDEAYGRLGVLANW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  M+FDISP  F P PKVTS+V+  IP   P PC    L+++T  AFG+RRK LRQS
Sbjct: 180 RAQTKMLFDISPAAFVPPPKVTSSVVRLIPRDEPEPCNRRMLEQVTAAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK LG +   L   AG+E   RAE + +  F  +   L +
Sbjct: 240 LKSLGVDPARLAAAAGVEPTRRAETIPVAGFVAMARELAN 279


>gi|49475334|ref|YP_033375.1| dimethyladenosine transferase [Bartonella henselae str. Houston-1]
 gi|62900526|sp|Q6G438|RSMA_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49238140|emb|CAF27348.1| Dimethyladenosine transferase [Bartonella henselae str. Houston-1]
          Length = 276

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 142/274 (51%), Positives = 191/274 (69%), Gaps = 2/274 (0%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
            +    L+ +++ Y +   K +GQNFL DLN+  KIA  +G+++G  VIE+G GPG LT+
Sbjct: 3   IDSLPPLREVINTYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTR 62

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRII 122
            LL  GA  V  IE+D++  P L +I   +P +L+II +DALK DF K F IS    RII
Sbjct: 63  ALLAKGA-IVTAIERDERCIPALLEIEKHYPQKLKIICNDALKQDFSKLFEISPEKPRII 121

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYNIGT+LL NW+ A+ WPPF+ES+TL+FQ+EV +RITA+  S HYGRLSVLTGWRT
Sbjct: 122 ANLPYNIGTQLLLNWLLAEPWPPFYESMTLMFQREVAQRITAKPQSAHYGRLSVLTGWRT 181

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            A + FD+ P  F P+PK+TS+V+H IP   P+ C  + L  +T+ AFG+RRK LRQ+LK
Sbjct: 182 IAKIAFDVPPQAFIPAPKITSSVVHIIPRTQPLTCSAQKLSFVTKTAFGQRRKMLRQNLK 241

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            LGGE LL +AGI+   RAE L I +F  + N++
Sbjct: 242 TLGGEVLLEKAGIDETRRAETLEISEFVTLANLV 275


>gi|209885479|ref|YP_002289336.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5]
 gi|226732605|sp|B6JGM4|RSMA_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|209873675|gb|ACI93471.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5]
          Length = 282

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/280 (43%), Positives = 176/280 (62%), Gaps = 3/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  Y +  +K +GQNFL DLN+  +IA ++G LD +TVIEIG GPG 
Sbjct: 1   MSQIDDLPPLREVIRKYDLFARKSLGQNFLFDLNLTARIARAAGPLDDVTVIEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA++VI +E+D++  P L++I+ ++P RLEII  DA   D           R
Sbjct: 61  LTRALLATGAKRVIAVERDERAIPALEEIARRYPGRLEIIHGDATTFDPTPLLQ-GERAR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+S + WPP+++ + L+FQ+EV ERI A +N   YGRL VL  W
Sbjct: 120 IVANLPYNIATLLLTGWLSVEPWPPWFDMMVLMFQREVAERIVATENDEAYGRLGVLANW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  ++FDI+P  F P PKV S+V+   P   P+ C   +L+++T  AF +RRK LRQS
Sbjct: 180 RAETKILFDIAPGAFVPPPKVMSSVVRLAPRAAPLACSRRALEQVTAAAFNQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK LG +   L   AG++   RAE +SI  F  + N L +
Sbjct: 240 LKALGVDPAALAEAAGVDPTRRAETVSIAGFVAMANRLIE 279


>gi|254465027|ref|ZP_05078438.1| dimethyladenosine transferase [Rhodobacterales bacterium Y4I]
 gi|206685935|gb|EDZ46417.1| dimethyladenosine transferase [Rhodobacterales bacterium Y4I]
          Length = 280

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 125/280 (44%), Positives = 173/280 (61%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L G  V+EIG GPG 
Sbjct: 1   MSAIDSLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L++I+  +P R E+I  DAL++D     +++ PIR
Sbjct: 61  LTRGLLAEGARRVLAIEKDTRCLPALQEIADAYPGRFEVINGDALEID--PLEHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPPFWESLTL+FQ+EV ERI AQ  S  YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPKEWPPFWESLTLMFQREVAERIVAQPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV+S V+H      P  P     L ++   AF +RRK LR 
Sbjct: 179 RADARIVLSLPPGAFTPPPKVSSAVVHLDALPEPRFPADAAILSRVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +    E  L  AGI    RAE +S+E FC +   L 
Sbjct: 239 SLKGISPDIEAHLTAAGIPPTERAEQVSLEAFCALARELA 278


>gi|294678211|ref|YP_003578826.1| dimethyladenosine transferase [Rhodobacter capsulatus SB 1003]
 gi|294477031|gb|ADE86419.1| dimethyladenosine transferase [Rhodobacter capsulatus SB 1003]
          Length = 280

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/280 (44%), Positives = 179/280 (63%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ ++++ KK +GQNFLLDLN+  KIA ++G L G  V+E+G GPG 
Sbjct: 1   MAAIDGLPPLREVIATHELVAKKALGQNFLLDLNLTAKIARAAGDLTGCDVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ +EKD +  P L +I++ +P RLE+I  DAL VD     +++ PIR
Sbjct: 61  LTRGLLAEGARRVLAVEKDSRCLPALAEIAAHYPGRLEVINGDALAVDV--LAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQKEV ERI A+  + HYGRL++L  W
Sbjct: 119 IAANLPYNVGTELLIRWLTPAVWPPFWQSLTLMFQKEVAERIVAKPGTDHYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +A ++  + P  F P+PKV S V+H      P  P     L+++    F +RRK LR 
Sbjct: 179 RAEAKIVMVLPPEAFTPAPKVHSAVVHLTALPAPRYPADPAVLERVVAAGFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +    + LL +AGI    RAE +S+E FC +  ++ 
Sbjct: 239 SLKGVHPRIDALLEEAGIPPTERAERVSLEQFCHLARLVA 278


>gi|310816142|ref|YP_003964106.1| dimethyladenosine transferase [Ketogulonicigenium vulgare Y25]
 gi|308754877|gb|ADO42806.1| dimethyladenosine transferase [Ketogulonicigenium vulgare Y25]
          Length = 281

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 128/280 (45%), Positives = 180/280 (64%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ + +  KK +GQNFLLDLN+  KIA  +G L G  V+EIG GPG 
Sbjct: 1   MAAIDNLPPLREVIATHGLSAKKALGQNFLLDLNLTAKIARQAGDLSGSDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD++  P L++I+  +P R   IQ DAL+VD     +++ PIR
Sbjct: 61  LTRGLLAEGARRVLSIEKDERCIPALEEIADAYPGRFSYIQGDALQVD--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYNIGT LL  W++   WPPFW+SLTL+FQ+EV ERITA+  S HYGRL++L+ W
Sbjct: 119 VAANLPYNIGTELLIRWLTPPQWPPFWQSLTLMFQREVAERITAKPGSNHYGRLAILSQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++ D+ P  F P PKV+S V+H      P  P  L+ L+++T  AFG+RRK LR 
Sbjct: 179 RADARIVLDLPPQAFTPPPKVSSAVVHLTALPAPRFPADLKVLERVTAAAFGQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SL+ L    E++L    I+   RAE + +E FC +   + 
Sbjct: 239 SLRGLAPDIEDILTSVDIKPTERAEQIDLEHFCALARAIA 278


>gi|148255223|ref|YP_001239808.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1]
 gi|166221648|sp|A5EIA8|RSMA_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146407396|gb|ABQ35902.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1]
          Length = 286

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 124/283 (43%), Positives = 183/283 (64%), Gaps = 3/283 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  +++  +K +GQNFLLDLN+  +IA ++G L+  TV+EIG GPG 
Sbjct: 1   MSAIDDLPPLREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL LGAR VI +E D++  P L+ I+ ++P RLEI+  DA   D   +   S+  +
Sbjct: 61  LTRALLALGARHVIAVEHDERAIPALQAIAERYPGRLEIVCTDARTFDVRPYLG-STKAK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+SA+ WPP+++ + L+FQ+EV ERI A++N   YGRL VL  W
Sbjct: 120 IVANLPYNIATHLLIGWLSAEPWPPWYDMMVLMFQREVAERIVARENEEAYGRLGVLANW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  ++FDISP  F P PKVTS+V+  +P   P PC   +L+++   AFG+RRK LRQS
Sbjct: 180 RCETKILFDISPSAFVPPPKVTSSVVRLVPRTAPEPCDRRALEQVAAAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           LK L  +   L   AG++   RAE + +  F  +   LT+++D
Sbjct: 240 LKSLPTDPARLAAAAGVDPTRRAETIPVSGFVAMARELTNSRD 282


>gi|254462138|ref|ZP_05075554.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2083]
 gi|206678727|gb|EDZ43214.1| dimethyladenosine transferase [Rhodobacteraceae bacterium HTCC2083]
          Length = 280

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 119/282 (42%), Positives = 179/282 (63%), Gaps = 5/282 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT  +    L+ ++  +++  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MTTIDPLPPLRDVIERHELSARKSLGQNFLLDLNLTAKIARQAGDLSQCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GARKV+ IEKD +  P L +I+  +PNRL +I+ DAL +D     +++ PIR
Sbjct: 61  LTRGLLSEGARKVLAIEKDARCLPALDEIAQAYPNRLHVIEGDALGLD--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + +NLPYN+GT LL  W++   WPP+W+SLTL+FQ+EV +RI A+  S  YGRL++L  W
Sbjct: 119 VASNLPYNVGTELLIRWLTPKQWPPYWQSLTLMFQREVAQRIVAEPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++ ++ P  F P PKV+S V+H      P  P   ++L+++   AF +RRK LR 
Sbjct: 179 RCDARIVINLPPEAFSPPPKVSSAVVHLTALSEPRFPADFKTLERLVATAFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SLK +    E+ L  AG+++  RAE + +E FC +   +  +
Sbjct: 239 SLKSVSPDIEDHLRAAGLKSTERAEQIPLEGFCALAREVAKS 280


>gi|240850227|ref|YP_002971620.1| dimethyladenosine transferase [Bartonella grahamii as4aup]
 gi|240267350|gb|ACS50938.1| dimethyladenosine transferase [Bartonella grahamii as4aup]
          Length = 276

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 141/277 (50%), Positives = 190/277 (68%), Gaps = 3/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M ++N    L+ ++    +   K +GQNFL DLN+  KIA  +G+++G  V+EIG GPG 
Sbjct: 1   MPIDN-LPPLREVIDICGLQAHKSLGQNFLFDLNLTSKIAHHAGNIEGKPVLEIGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119
           LT+ LL  GA  V  IE+D++  P L +I   +P +L+II +DALK DF K F  S    
Sbjct: 60  LTRALLAKGA-IVTAIERDERCIPALLEIEKHYPKKLKIICNDALKQDFSKLFETSPEKP 118

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RIIANLPYNIGT+LL NW+  + WPPF+ES+TL+FQ+EV +RITA+  S HYGRLSVLTG
Sbjct: 119 RIIANLPYNIGTQLLLNWLLTEPWPPFYESMTLMFQREVAKRITAKPQSTHYGRLSVLTG 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           WRT A + FD+ P  F P PKVTS+V+H IP   P+ C  + L  +T+ AFG+RRK LRQ
Sbjct: 179 WRTTAKIAFDVPPQAFIPIPKVTSSVVHIIPRTQPLACSAQKLSLVTKTAFGQRRKMLRQ 238

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +LK LGGE LL +AGI+   RAE LS+ +F  + +++
Sbjct: 239 NLKTLGGEVLLEKAGIDGTRRAETLSVSEFVTLAHLV 275


>gi|114768929|ref|ZP_01446555.1| dimethyladenosine transferase [alpha proteobacterium HTCC2255]
 gi|114549846|gb|EAU52727.1| dimethyladenosine transferase [alpha proteobacterium HTCC2255]
          Length = 280

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 130/281 (46%), Positives = 176/281 (62%), Gaps = 7/281 (2%)

Query: 1   MTMN--NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           M++N  +    L+ I++ Y++  KK +GQNFLLDLN+  KIA  +G L   TV+EIG GP
Sbjct: 1   MSLNTLDGLPPLREIINEYQLSAKKSLGQNFLLDLNLTNKIARMAGDLTNHTVLEIGPGP 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118
           G LT+ LL  GA+KV+ IE+D++  P L  I     NRLE+   DAL  + E + N   P
Sbjct: 61  GGLTRALLNSGAKKVLAIERDERLIPALNQIKEHFDNRLEVKYTDALNENIEAYLN--GP 118

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPYNIGT LL  W++   WPP+WESLTL+FQKEV +RI A   S  YGRL++L 
Sbjct: 119 VKVVANLPYNIGTELLVRWLTPSEWPPYWESLTLMFQKEVAKRIVATPGSKAYGRLALLV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTL 237
            WR  A ++ +ISP  F P PKVTS V+H     NP      + L+KI   AF +RRK L
Sbjct: 179 QWRCNAKIVMEISPQAFTPPPKVTSAVVHIERLTNPRFEADGKVLEKIVAAAFNQRRKML 238

Query: 238 RQSLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           R SLK      E++L   GI+   RAE +S+E FC +  +L
Sbjct: 239 RVSLKAFSPIIEDILIDVGIKPTQRAEEISLEQFCALARVL 279


>gi|126739404|ref|ZP_01755097.1| dimethyladenosine transferase [Roseobacter sp. SK209-2-6]
 gi|126719504|gb|EBA16213.1| dimethyladenosine transferase [Roseobacter sp. SK209-2-6]
          Length = 291

 Score =  318 bits (815), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 124/280 (44%), Positives = 175/280 (62%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  +++  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 11  MSTIDNLPPLREVIETHQLSARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGG 70

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ +EKD +  P L +IS+ +P +LE+I  DAL+VD     +++ P+R
Sbjct: 71  LTRGLLAEGARRVLAVEKDARCMPALAEISTAYPGQLEVINGDALEVD--ALAHLTPPVR 128

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  S  YGRL++L  W
Sbjct: 129 IAANLPYNVGTELLVRWLTPKEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLALLAQW 188

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV S V+H      P  P    +L ++   AF +RRK LR 
Sbjct: 189 RADARIVLALPPEAFSPPPKVHSAVVHLTALAEPRYPADAATLSRVIAAAFNQRRKMLRA 248

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +    E+ L  AGI+   RAE +S+E+FC +   L 
Sbjct: 249 SLKSVAPNIEDHLIAAGIKPTERAEQVSLEEFCALARSLK 288


>gi|300023222|ref|YP_003755833.1| dimethyladenosine transferase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525043|gb|ADJ23512.1| dimethyladenosine transferase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 290

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 122/279 (43%), Positives = 177/279 (63%), Gaps = 3/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT  +    L+ ++  + +  KK +GQNFLLDLN+ +KIA ++G +   TV+EIG GPG 
Sbjct: 4   MTTADGLPPLRDVIERHGLAAKKSLGQNFLLDLNLTRKIARAAGDISKSTVVEIGPGPGG 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA+ VI IE+D +    L +I +++P RL +   DALK D+ +    + P+ 
Sbjct: 64  LTRALLIEGAKNVIAIERDDRCLAALDEIVARYPGRLRVHAGDALKTDWTELIAGAHPVT 123

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYNI + LL +W+  + WPP+++ + L+FQ+EV ERI A   +  YGRLSVL  +
Sbjct: 124 IAANLPYNIASVLLVDWLETEPWPPWFDRMVLMFQREVAERIIAAPRTKAYGRLSVLAQY 183

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239
           RT+A +  ++ P  F P PKV+S V+ F P   P P C + +L ++T  AFG+RRK LR 
Sbjct: 184 RTEARIAINLPPEAFTPPPKVSSAVVDFRPIAEPEPRCRVSTLARVTAAAFGQRRKMLRS 243

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           SLK+L    E LL + GI    RAE+LS+E+F R+  I 
Sbjct: 244 SLKQLTPMAELLLREGGIAPERRAEDLSVEEFARLAAIF 282


>gi|182677647|ref|YP_001831793.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633530|gb|ACB94304.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 297

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 122/274 (44%), Positives = 165/274 (60%), Gaps = 4/274 (1%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L+ +++ Y +  KK +GQNFL DLN+  +IA ++       ++EIG GPG LT+ 
Sbjct: 11  DDLPPLREVVATYGLAAKKALGQNFLFDLNLTGRIARAADPSKTALIVEIGPGPGGLTRA 70

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL  GA KVI IE+D++  P L +I++ +P RLE++  DAL  D         P RI AN
Sbjct: 71  LLAEGAPKVIAIEQDERCLPALAEIAAHYPGRLEVVAGDALTTDLGLLVASYRPARICAN 130

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTGWRTK 183
           LPYNIGT LL  WI  + WPP+++ L L+FQ+EV ERI A       YGRL+VL  WR +
Sbjct: 131 LPYNIGTALLTRWIETEPWPPWFDRLVLMFQREVAERIVATPAQRADYGRLAVLCNWRCE 190

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             ++FD+SP  F P PKVTS V+  +P   P+ C  E L  +TQ AFG+RRK LRQSLK 
Sbjct: 191 TRILFDVSPSAFTPPPKVTSAVVELVPRAEPLTCDREKLSAVTQAAFGQRRKMLRQSLKS 250

Query: 244 L---GGENLLHQAGIETNLRAENLSIEDFCRITN 274
           L   G   L+  AG+   LRAE + I  F  +  
Sbjct: 251 LLGGGTSALIEAAGLAPTLRAEEVDIAGFVALAR 284


>gi|319408315|emb|CBI81968.1| dimethyladenosine transferase [Bartonella schoenbuchensis R1]
          Length = 276

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 138/277 (49%), Positives = 190/277 (68%), Gaps = 3/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M ++N    L+ +++ Y +   K +GQNFL DLN+  KIA+ +G++ G  VIE+G GPG 
Sbjct: 1   MPIDN-LPPLREVINTYGLQANKSLGQNFLFDLNLTSKIAQQAGNIAGKPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119
           LT+ LL  GA  V  IE+D++    L DI   +P +L++I +DALK +F + F       
Sbjct: 60  LTRALLAKGA-IVTAIERDERCLQALLDIEKHYPQKLKVICNDALKQNFSEIFEAYPEKP 118

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            IIANLPYNIGT+LL NWI  + WPPF++S+TL+FQ+EV +RITA  +SPHYGRLSVL G
Sbjct: 119 HIIANLPYNIGTQLLLNWILTEPWPPFYKSMTLMFQREVAKRITATPHSPHYGRLSVLIG 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           WR  A + FD+SP  F P PKVTS+V+H IP   P+PC  + L  +T+ AFG++RK LRQ
Sbjct: 179 WRAIAKIAFDVSPKAFTPIPKVTSSVVHIIPRPQPLPCSTQKLSLVTKAAFGQKRKMLRQ 238

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           SLK +GGE LL ++GI+   RAE LSI +F  + N++
Sbjct: 239 SLKTIGGEMLLEKSGIDGTRRAETLSISEFVSLANLV 275


>gi|83953609|ref|ZP_00962330.1| dimethyladenosine transferase [Sulfitobacter sp. NAS-14.1]
 gi|83841554|gb|EAP80723.1| dimethyladenosine transferase [Sulfitobacter sp. NAS-14.1]
          Length = 280

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 118/280 (42%), Positives = 176/280 (62%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  +K +GQNFLLDLN+  KIA  +G +    V+EIG GPG 
Sbjct: 1   MSTIDNLPPLREVINTHDLKARKSLGQNFLLDLNLTAKIARQAGDMTECDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GAR+V+ IEKD++  P L +I+  +P+RL +I+ DAL++D     +++ PIR
Sbjct: 61  LTRGLLSEGARRVLAIEKDKRCLPALAEIAEAYPDRLTVIEGDALEID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI A+  S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPQEWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++ ++ P  F P PKV+S V+H      P  P   + L ++   AF +RRK LR 
Sbjct: 179 RADARIVLNLPPEAFTPPPKVSSAVVHLTALPEPRFPADPDVLNRVVAAAFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK      E+ L  AG++   RAE + +E FC +   + 
Sbjct: 239 ALKGTAPDIEDRLRAAGLKPTERAEQVPLEGFCALAREIA 278


>gi|163746453|ref|ZP_02153811.1| dimethyladenosine transferase [Oceanibulbus indolifex HEL-45]
 gi|161380338|gb|EDQ04749.1| dimethyladenosine transferase [Oceanibulbus indolifex HEL-45]
          Length = 287

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 117/280 (41%), Positives = 173/280 (61%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ +++  +K +GQNFLLDLN+  KIA  +G +    V+EIG GPG 
Sbjct: 8   MSTIDNLPPLREVINTHELAARKSLGQNFLLDLNLTAKIARQAGDMADCDVLEIGPGPGG 67

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR V+ IEKD++  P L +++  +P RL +I+ DAL++D     +++ PIR
Sbjct: 68  LTRGLLAEGARHVLAIEKDRRCLPALAEVAEHYPGRLTVIEGDALEID--PLSHLTPPIR 125

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI A   S  YGRL+VL  W
Sbjct: 126 VAANLPYNVGTELLVRWLTPPQWPPFWQSLTLMFQREVAERIVATPGSKAYGRLAVLAQW 185

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R+ A ++  + P  F P PKV+S+V+H      P  P     L ++   AF +RRK LR 
Sbjct: 186 RSDARIVMQLPPGAFTPPPKVSSSVVHLTALPEPRYPADPAVLSRVVAMAFNQRRKMLRS 245

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK      E+ L  AG++   RAE + +E FC +   + 
Sbjct: 246 ALKGAAPDIEDRLIAAGLKPTDRAEQVPLEGFCALAREIA 285


>gi|298291091|ref|YP_003693030.1| dimethyladenosine transferase [Starkeya novella DSM 506]
 gi|296927602|gb|ADH88411.1| dimethyladenosine transferase [Starkeya novella DSM 506]
          Length = 283

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 135/277 (48%), Positives = 190/277 (68%), Gaps = 3/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++++    L+ ++  + +   K +GQNFLLDLN+  KIA ++G L+G+TVIE+G GPG 
Sbjct: 1   MSVDD-LPPLREVIREHGLSALKSLGQNFLLDLNLTSKIARTAGKLEGLTVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL LG  KVI IE+D++    L ++++ +P RLE+++ DAL  D+      S+   
Sbjct: 60  LTRALLALGTDKVIAIERDRRCIAALAEVAAHYPGRLEVVEGDALAADYAALIPASTRAA 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+++D WPP++ESLTL+FQ+EV ERI A   S HYGRL+VLTGW
Sbjct: 120 IVANLPYNIATPLLVGWLTSDPWPPWYESLTLMFQREVAERIVAASGSDHYGRLAVLTGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R  A + FD+    F P PKVTS+V+H +P   P+PC L++L+K+T+ AFG+RRK LRQS
Sbjct: 180 RANARIAFDVPASAFVPPPKVTSSVVHIVPREKPLPCELKALEKVTEAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK LG +   LL  AGIE   RAE + +E F  + N 
Sbjct: 240 LKSLGVDAGKLLAAAGIEPTERAERIPVEGFVALANA 276


>gi|83942389|ref|ZP_00954850.1| dimethyladenosine transferase [Sulfitobacter sp. EE-36]
 gi|83846482|gb|EAP84358.1| dimethyladenosine transferase [Sulfitobacter sp. EE-36]
          Length = 280

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 118/280 (42%), Positives = 176/280 (62%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  +K +GQNFLLDLN+  KIA  +G +    V+EIG GPG 
Sbjct: 1   MSTIDNLPPLREVINTHDLKARKSLGQNFLLDLNLTAKIARQAGDMTECDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GAR+V+ IEKD++  P L +I+  +P+RL +I+ DAL++D     +++ PIR
Sbjct: 61  LTRGLLSEGARRVLAIEKDKRCLPALAEIAEAYPDRLTVIEGDALEID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI A+  S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPQEWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++ ++ P  F P PKV+S V+H      P  P   + L ++   AF +RRK LR 
Sbjct: 179 RADARIVLNLPPEAFTPPPKVSSAVVHLTALPQPRFPADPDVLNRVVAAAFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK      E+ L  AG++   RAE + +E FC +   + 
Sbjct: 239 ALKGTAPDIEDRLLAAGLKPTERAEQVPLEGFCALAREIA 278


>gi|86138688|ref|ZP_01057261.1| dimethyladenosine transferase [Roseobacter sp. MED193]
 gi|85824748|gb|EAQ44950.1| dimethyladenosine transferase [Roseobacter sp. MED193]
          Length = 281

 Score =  315 bits (807), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 120/280 (42%), Positives = 173/280 (61%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  ++++ +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MSAIDSLPPLREVIDTHQLLARKSLGQNFLLDLNLTSKIARQAGDLSECDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ +EKD +  P L +I+  +P RL++I  DAL +D     +++ P+R
Sbjct: 61  LTRGLLAEGARRVLAVEKDSRCMPALAEIAEAYPGRLQLINGDALDID--PLEHLTPPVR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  +  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAQPGTKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV S V+H      P  P    +L ++    F +RRK LR 
Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLTALQEPRFPADAATLSRVIAAGFNQRRKMLRA 238

Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +  G E+ L  AGI    RAE +S+E+FC +   + 
Sbjct: 239 SLKSVTPGIEDHLKAAGIAPTERAEQVSLEEFCALARSIK 278


>gi|255262783|ref|ZP_05342125.1| dimethyladenosine transferase [Thalassiobium sp. R2A62]
 gi|255105118|gb|EET47792.1| dimethyladenosine transferase [Thalassiobium sp. R2A62]
          Length = 282

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 121/280 (43%), Positives = 170/280 (60%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L  ++  + +  KK +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MSQIDGLPPLSEVIQTHGLAAKKSLGQNFLLDLNLTAKIARQAGDLSDCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L +IS  +PNRL +I+ DAL +D     +++ PIR
Sbjct: 61  LTRGLLAEGARRVLAIEKDPRCLPALDEISQAYPNRLHVIEGDALDID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPPFWESLTL+FQ+EV +RI A+  S  YGRL++L  W
Sbjct: 119 VSANLPYNVGTELLVRWLTPRDWPPFWESLTLMFQREVAQRIVAEPGSKAYGRLAILAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++ ++ P  F P PKV+S V+H      P  P    +L +I    F +RRK LR 
Sbjct: 179 RADARIVINLPPEAFSPPPKVSSAVVHLTALAEPRYPADAATLNRIVAAGFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +    +  +  AG+    RAE +S+E FC +   + 
Sbjct: 239 SLKGVAPNIQGYIEAAGLRPTDRAEQISLEGFCALARQIK 278


>gi|49474096|ref|YP_032138.1| dimethyladenosine transferase [Bartonella quintana str. Toulouse]
 gi|62900523|sp|Q6G052|RSMA_BARQU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49239600|emb|CAF25957.1| Dimethyladenosine transferase [Bartonella quintana str. Toulouse]
          Length = 276

 Score =  314 bits (806), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 140/277 (50%), Positives = 192/277 (69%), Gaps = 3/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M ++N    L+ ++  Y +   K +GQNFL DLN+  KIA  +G+++G  VIE+G GPG 
Sbjct: 1   MPIDN-LPPLREVIDIYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119
           LT+ LL  GA  VI IE+D++  P L  I   +P +L++I +DALK +F K F       
Sbjct: 60  LTRALLAKGAL-VIAIERDERCIPALLAIEKHYPKKLKLICNDALKQNFSKLFETYPEKP 118

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RIIANLPYNIGT+LL NW+  + WPPF+ES+TL+FQ+EV +RITA+  S +YGRLSVLTG
Sbjct: 119 RIIANLPYNIGTQLLLNWLLVEPWPPFYESMTLMFQREVAKRITAKPQSAYYGRLSVLTG 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           WRT A + FD+ P  F P+PK+TS+V+H IP + P+ C  + L  +T+ AFG+RRK LRQ
Sbjct: 179 WRTTAKIAFDVPPQAFIPAPKITSSVVHIIPRIQPLTCSAQKLSFVTKTAFGQRRKMLRQ 238

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +LK LGGE LL +AGI+   RAE LSI +F  + N++
Sbjct: 239 NLKTLGGEMLLAKAGIDGTRRAETLSISEFVTLANLV 275


>gi|316933703|ref|YP_004108685.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1]
 gi|315601417|gb|ADU43952.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1]
          Length = 287

 Score =  314 bits (806), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 125/282 (44%), Positives = 185/282 (65%), Gaps = 3/282 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+  +IA ++G LDG+TV+EIG GPG 
Sbjct: 1   MSAIDDLPPLREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLDGVTVVEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA++VI IE+D++    L++I++ +P RLEI+  DA++ D     N     R
Sbjct: 61  LTRALLATGAKRVIAIERDERALGALEEIAAHYPGRLEIVSGDAMEFDPRPLLN-GERAR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+ A+ WPP++E + L+FQ+EV +RI A ++   YGRL+VL  W
Sbjct: 120 IVANLPYNIATPLLIGWLCAEPWPPWYEMMVLMFQREVAQRIVAHQDDDAYGRLAVLANW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  M+FDISP  F P PKVTS+V+  +P   P PC   +L+++   AFG+RRK LRQS
Sbjct: 180 RAETQMLFDISPSAFVPPPKVTSSVVRLVPRAQPEPCDRAALEQVAAAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK LG +   L   AGI+   RAE + +  F  + N L++++
Sbjct: 240 LKSLGVDPAQLTAAAGIDPARRAETVPVSGFVAMANELSNSR 281


>gi|163735800|ref|ZP_02143229.1| dimethyladenosine transferase [Roseobacter litoralis Och 149]
 gi|161390886|gb|EDQ15226.1| dimethyladenosine transferase [Roseobacter litoralis Och 149]
          Length = 280

 Score =  314 bits (806), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 124/280 (44%), Positives = 177/280 (63%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT  +    L++++  + +  +K MGQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MTTIDNLPPLRSVIRDHDLSARKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L +I++ +P RLE++  DAL++D      ++ PIR
Sbjct: 61  LTRGLLAQGARRVLAIEKDARCLPALAEIAAAYPGRLEVVNGDALEID--PLSALTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++ +TWPP+W+SLTL+FQ+EV ERI A+  S  YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPETWPPYWQSLTLMFQREVAERIVAKPGSKAYGRLAILAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV+S+V+H      P  P     L K+   AF +RRK LR 
Sbjct: 179 RADAQIVMQLPPEAFTPPPKVSSSVVHITALPAPRYPADANVLSKVVAMAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK LG   E+ L  AGI+   RAE +S++ FC +   + 
Sbjct: 239 ALKGLGPDIEDRLQAAGIKPTERAERVSLQGFCALARAVA 278


>gi|254509515|ref|ZP_05121582.1| dimethyladenosine transferase [Rhodobacteraceae bacterium KLH11]
 gi|221533226|gb|EEE36214.1| dimethyladenosine transferase [Rhodobacteraceae bacterium KLH11]
          Length = 280

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 121/281 (43%), Positives = 174/281 (61%), Gaps = 5/281 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MNTIDTLPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTECDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GARKV+ +EKD +    L DI++ +P RLE+I  DAL++D     +++ PIR
Sbjct: 61  LTRGLLSEGARKVVALEKDTRCIAALNDIAAAYPGRLEVINGDALEID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  S  YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A +   + P  F P PKV+S V+H      P  P    +L ++   AF +RRK LR 
Sbjct: 179 RADAHIAMSLPPGAFTPPPKVSSAVVHLSALPQPRYPADAATLSRVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           SL+ +    E+ L  AGI+   RAE + +E FC +  ++  
Sbjct: 239 SLRGIAPDIEDRLIAAGIKPTDRAEQIPLESFCGLARMVKS 279


>gi|56697309|ref|YP_167675.1| dimethyladenosine transferase [Ruegeria pomeroyi DSS-3]
 gi|62900467|sp|Q5LQN0|RSMA_SILPO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56679046|gb|AAV95712.1| dimethyladenosine transferase [Ruegeria pomeroyi DSS-3]
          Length = 279

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 121/280 (43%), Positives = 173/280 (61%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MSAIDTLPPLREVIASHQLSARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L +I++ +  RLE+I  DAL++D     +++ PIR
Sbjct: 61  LTRGLLAEGARRVLAIEKDARCLPALAEIAAAYSGRLEVINGDALEID--PLAHMTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI A+  S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPRDWPPFWQSLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +A ++  + P  F P PKV+S V+H      P  P     L ++   AF +RRK LR 
Sbjct: 179 RAEARIVMSLPPEAFTPPPKVSSAVVHLTALPEPRFPADAAILSRVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK      E+ L  AGI+   RAE + +E FC +   L 
Sbjct: 239 ALKGQAPDIEDRLLAAGIKPTERAEQVPLEAFCALARELA 278


>gi|126725345|ref|ZP_01741187.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150]
 gi|126704549|gb|EBA03640.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150]
          Length = 280

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 119/282 (42%), Positives = 174/282 (61%), Gaps = 5/282 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L  ++  + +  +K +GQNFLLDLN+  KIA  +G L G  V+EIG GPG 
Sbjct: 1   MAQIDNLPPLSDVIETHGLAARKSLGQNFLLDLNLTSKIARQAGDLRGSDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +    L +I+S +PN+L+ I  DAL+ +     ++ +PI+
Sbjct: 61  LTRGLLAEGARRVLAIEKDTRCIAALDEIASAYPNQLKTINGDALEAN--PLEHLQAPIK 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV  RI A+     YGRL++L  W
Sbjct: 119 VVANLPYNVGTELLIRWLTPAEWPPFWDSLTLMFQREVAHRIVAKPGDKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +  ++ ++ P  F P+PKV+S V+H      P  P     L ++TQ AFG+RRK LR 
Sbjct: 179 RAEPRIVMELPPEAFTPAPKVSSAVVHLTALAEPRFPASGPHLSRVTQAAFGQRRKMLRA 238

Query: 240 SLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SLK +  +   +L   GI+   RAE + +E FC +  +L  N
Sbjct: 239 SLKGIFKDPTAVLESVGIDPTARAEVIGLEQFCALARVLKGN 280


>gi|146340299|ref|YP_001205347.1| dimethyladenosine transferase [Bradyrhizobium sp. ORS278]
 gi|166221649|sp|A4YT90|RSMA_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146193105|emb|CAL77116.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium
           sp. ORS278]
          Length = 286

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 125/283 (44%), Positives = 181/283 (63%), Gaps = 3/283 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  +++  +K +GQNFLLDLN+  +IA ++G L+  TV+EIG GPG 
Sbjct: 1   MSAIDDLPPLREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL LGAR VI +E D++  P L+ I+ ++P RLEI+  DA   D   +   S+  +
Sbjct: 61  LTRALLALGARHVIAVEHDERAIPALRTIADRYPGRLEIVYTDARTFDVRPYLG-STKAK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+SA+ WPP++E + L+FQ+EV ERI A +N   YGRL VL  W
Sbjct: 120 IVANLPYNIATHLLIGWLSAEPWPPWYEMMVLMFQREVAERIVATENEEAYGRLGVLANW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  ++FDISP  F P PKVTS+V+  +P   P PC   +L+++   AFG+RRK LRQS
Sbjct: 180 RCETKILFDISPSAFVPPPKVTSSVVRLVPRPAPEPCDRRALEQVAAAAFGQRRKMLRQS 239

Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           LK L      L   AGI+   RAE + +  F  +   LT++++
Sbjct: 240 LKSLPADPARLAAAAGIDPTRRAETIPVSGFVAMARELTNSRN 282


>gi|84500985|ref|ZP_00999220.1| dimethyladenosine transferase [Oceanicola batsensis HTCC2597]
 gi|84391052|gb|EAQ03470.1| dimethyladenosine transferase [Oceanicola batsensis HTCC2597]
          Length = 279

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 122/280 (43%), Positives = 174/280 (62%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ + +  +K +GQNFLLDLN+  KIA  +G L G  V+EIG GPG 
Sbjct: 1   MATIDGLPPLREVIATHGLAARKSLGQNFLLDLNLTAKIARQAGDLSGCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L +I++ +P RLE++  DAL+VD      ++ PIR
Sbjct: 61  LTRGLLAEGARRVLAIEKDARCLPALAEIAAAYPRRLEVVNGDALEVD--PLTRLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W++ D WPP+W+SLTL+FQ+EV ERI A+     YGRL++L  W
Sbjct: 119 IVANLPYNVGTELLVRWLTPDRWPPYWDSLTLMFQREVAERIVARPGGKAYGRLALLASW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +A +   + P  F P PKV+S V+H      P  P     L+++   AF +RRK LR 
Sbjct: 179 RAEARITLSLPPEAFTPPPKVSSAVVHLTALPEPRYPADPRVLERVVAMAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK L    E+ L  A I    RAE +S+E FC +   ++
Sbjct: 239 ALKGLAPDIEDRLRAASIAPTDRAETVSLEQFCALARAVS 278


>gi|90423811|ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
 gi|119365055|sp|Q215S4|RSMA_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|90105825|gb|ABD87862.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
          Length = 286

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 126/280 (45%), Positives = 182/280 (65%), Gaps = 3/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+L +IA ++G LDG TVIEIG GPG 
Sbjct: 1   MSGIDDLPPLRDVIKRHDLSARKSLGQNFLLDLNLLTRIARAAGPLDGATVIEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL LGA KVI IE+D++    L++I++ +P RLEI+  DA   D        +  +
Sbjct: 61  LTRALLALGAAKVIAIERDERALGALQEIAAHYPGRLEIVCADATIYDPRPLLG-GARAK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+S + WPP+++++ L+FQ+EV ERI A+++   YGRL+VL  W
Sbjct: 120 IVANLPYNIATPLLIGWLSIEPWPPWYDTMVLMFQREVAERIVAREDDEAYGRLAVLANW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  ++FDISP  F P PKVTS+V+  +P   P PC    L+++   AFG+RRK LRQS
Sbjct: 180 RAETKLLFDISPAAFVPQPKVTSSVVRLVPRETPEPCDRRMLEQVAAAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK LG +   L   AG++   RAE +++  F  +   LTD
Sbjct: 240 LKPLGVDPARLAAAAGVDPTRRAETIAVSGFVAMARELTD 279


>gi|39936129|ref|NP_948405.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009]
 gi|192291847|ref|YP_001992452.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1]
 gi|62900541|sp|Q6N5B4|RSMA_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732615|sp|B3Q9S4|RSMA_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|39649983|emb|CAE28507.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009]
 gi|192285596|gb|ACF01977.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1]
          Length = 287

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 125/284 (44%), Positives = 184/284 (64%), Gaps = 3/284 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+  +IA ++G L+G+TV+EIG GPG 
Sbjct: 1   MSAIDDLPPLREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLEGVTVVEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA++VI IE+D++    L++I++ +P RL+II  DA++ D     N     R
Sbjct: 61  LTRALLATGAKRVIAIERDERALGALEEIAAHYPGRLDIISGDAMEFDPRPLLN-GDRAR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+ A+ WPP++E + L+FQ+EV +RI A  +   YGRL+VL  W
Sbjct: 120 IVANLPYNIATPLLIGWLCAEPWPPWYEMMVLMFQREVAQRIVAHHDDDAYGRLAVLANW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  M+FDISP  F P PKVTS+V+  +P   P PC   +L+++   AFG+RRK LRQS
Sbjct: 180 RAETQMLFDISPSAFVPPPKVTSSVVRLVPRAQPEPCDRAALEQVAAAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           LK LG +   L   AGI+   RAE + +  F  + N L +++ I
Sbjct: 240 LKSLGVDPAQLTAAAGIDPARRAETVPVSGFVAMANELANSRAI 283


>gi|319407063|emb|CBI80700.1| dimethyladenosine transferase [Bartonella sp. 1-1C]
          Length = 276

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 142/276 (51%), Positives = 191/276 (69%), Gaps = 2/276 (0%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + +    L+ I++ YK+   K +GQNF+ DLN+  KIA  +G+++G  V+EIG GPG LT
Sbjct: 2   LIDNLPPLRNIINKYKLQANKSLGQNFIFDLNLTAKIAHQAGNIEGKPVLEIGPGPGGLT 61

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121
           + LL  GA  V  IE+D++  P L +I   +P +L++I +DALK DF K F       RI
Sbjct: 62  RALLAKGA-IVTAIERDERCMPALLEIEEHYPQKLKLIFNDALKQDFPKLFEAYPEKPRI 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           IANLPYNIGT+LL NW+    WPPF+ES+TL+FQ+EV +RITA   SP+YGRLS+LTGWR
Sbjct: 121 IANLPYNIGTQLLLNWLLTKAWPPFYESMTLMFQREVAKRITATSQSPYYGRLSILTGWR 180

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           + A + FDI P  F P PKVTS+V+H IP L P+ C  + L  +T+ AFG+RRK LRQSL
Sbjct: 181 SIAKIAFDIPPQAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSL 240

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           K +GGE LL +AGI+   RAE LSI +F  + N++T
Sbjct: 241 KTIGGETLLEKAGIDGTRRAETLSISEFVTLANLIT 276


>gi|149186122|ref|ZP_01864436.1| dimethyladenosine transferase [Erythrobacter sp. SD-21]
 gi|148830153|gb|EDL48590.1| dimethyladenosine transferase [Erythrobacter sp. SD-21]
          Length = 273

 Score =  312 bits (799), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 114/271 (42%), Positives = 165/271 (60%), Gaps = 3/271 (1%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+ +++ + +   K +GQNFL D  +L +IA   G+L G  V+EIG GPG LT+ LL 
Sbjct: 5   PPLREVIARHGLSASKALGQNFLFDQQLLDRIAALPGALAGRRVLEIGPGPGGLTRALLK 64

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GA +V  IE D++  P L ++   +P +LE+I+ DALK+D +       P  I++NLPY
Sbjct: 65  AGA-EVTAIEMDERCLPALAELGEAYPGKLEVIRGDALKLDHDAIMG-GEPYAILSNLPY 122

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+GT L   W+  + WPP W SLTL+FQ+EV +RI A+  +  YGRLSVL  WR +A + 
Sbjct: 123 NVGTALFTRWMGGEAWPPLWTSLTLMFQQEVAQRIVAKSGTSAYGRLSVLAQWRAQAKLA 182

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
             +    F P PKV S ++H  P   P     + L+++T+ +FG+RRK LRQSLK + G 
Sbjct: 183 MKVHRSAFTPPPKVMSAIVHVEPGAMPEGVSAKVLERLTETSFGQRRKMLRQSLKGVAGA 242

Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNILT 277
            + L   GI++  RAE LSIE+F  +   LT
Sbjct: 243 VDTLETLGIDSQRRAETLSIEEFVALARALT 273


>gi|254488687|ref|ZP_05101892.1| dimethyladenosine transferase [Roseobacter sp. GAI101]
 gi|214045556|gb|EEB86194.1| dimethyladenosine transferase [Roseobacter sp. GAI101]
          Length = 280

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 120/280 (42%), Positives = 171/280 (61%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  +K +GQNFLLDLN+  +IA  +G L    V+EIG GPG 
Sbjct: 1   MSTIDSLPPLRDVINTHDLKARKSLGQNFLLDLNLTARIARHAGDLTACDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GAR V+ IEKD +  P L +I+  +P RL +I+ DAL +D     ++  PIR
Sbjct: 61  LTRALLSEGARHVLAIEKDARCLPALAEIADAYPGRLTVIEGDALDID--PLAHLKPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFWESLTL+FQ+EV ERI A+  S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPPDWPPFWESLTLMFQREVAERIVAKPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P+PKV+S V+H      P  P     L +I   AF +RRK LR 
Sbjct: 179 RADARIVMHLPPEAFTPAPKVSSAVVHLTALPEPRFPADPAILSRIVATAFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK +    E+ L  AG++   RAE + +E FC +   + 
Sbjct: 239 ALKGVAPDIEDRLIAAGLKPTDRAEQIPLEGFCALAREIA 278


>gi|319404051|emb|CBI77639.1| dimethyladenosine transferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 276

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 142/276 (51%), Positives = 192/276 (69%), Gaps = 2/276 (0%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + +    L+ ++S YK+   K +GQNF+ DLN+  KIA  +G+++G  V+EIG GPG LT
Sbjct: 2   LIDNLPPLRNVISKYKLQANKSLGQNFIFDLNLTAKIAHQAGNIEGKPVLEIGPGPGGLT 61

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121
           + LL  GA  V  IE+D++  P L +I   +P +L++I +DALK DF K F       RI
Sbjct: 62  RALLAKGA-IVTAIERDERCMPALLEIEEHYPQKLKLIFNDALKQDFPKLFEAYPEKPRI 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           IANLPYNIGT+LL NW+   +WPPF+ES+TL+FQ+EV +RITA   SP+YGRLS+LTGWR
Sbjct: 121 IANLPYNIGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATAQSPYYGRLSILTGWR 180

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           + A + FDI P  F P PKVTS+V+H IP L P+ C  + L  +T+ AFG+RRK LRQSL
Sbjct: 181 SIAKIAFDIPPRAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSL 240

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           K +GGE LL +AGI+   RAE LSI +F  + N++T
Sbjct: 241 KTIGGETLLEKAGIDGTRRAETLSISEFVTLANLIT 276


>gi|220925669|ref|YP_002500971.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060]
 gi|219950276|gb|ACL60668.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060]
          Length = 283

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 125/279 (44%), Positives = 183/279 (65%), Gaps = 5/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + ++P+K +GQNFL DLN+  +IA ++G LDG+TV+E+G GPG 
Sbjct: 1   MS-TDGLPPLREVVRAHDLMPRKALGQNFLFDLNLTGRIARAAGPLDGVTVVEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA +VI IE+D +  P L +I++ +P RL +++ DAL  D         P R
Sbjct: 60  LTRALLAEGAARVIAIERDPRALPALAEIAAHYPGRLTVVEADALAFDPRPLVG-GGPAR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTG 179
           I+ANLPYN+GT LL  W++ + WPP+W+SLTL+FQ+EV ERI A ++   +YGRL VL G
Sbjct: 119 IVANLPYNVGTPLLTGWLAGEDWPPWWDSLTLMFQREVAERIVADEHDRANYGRLGVLCG 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           WR +A ++FD+ P  F P PKVTS+V+  +P  +P+PC + +L+ IT  AFG+RRK LRQ
Sbjct: 179 WRAQARILFDVPPSAFVPPPKVTSSVVRLVPRPSPLPCRVGALEAITGAAFGQRRKMLRQ 238

Query: 240 SLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           SL+    +   LL  AGI    RAE + +  F  +   L
Sbjct: 239 SLRAATPDPAPLLAAAGIPETARAEEVPVAGFVAMAQAL 277


>gi|85706337|ref|ZP_01037431.1| dimethyladenosine transferase [Roseovarius sp. 217]
 gi|85669110|gb|EAQ23977.1| dimethyladenosine transferase [Roseovarius sp. 217]
          Length = 283

 Score =  311 bits (798), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 117/279 (41%), Positives = 168/279 (60%), Gaps = 5/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+       L  +++ + +  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MSPLESLPPLARVIAAHGLSARKSLGQNFLLDLNLTSKIARQAGDLTTCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR V+ IEKD +  P L +I+   P RL ++  DAL +D     +++ PIR
Sbjct: 61  LTRGLLMEGARHVLAIEKDARCLPALHEIAEAAPGRLTVLNADALDLD--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +++NLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI A   S  YGRL++L  W
Sbjct: 119 VVSNLPYNVGTELLIRWLTPPDWPPFWQSLTLMFQREVAERIVATPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R    ++  + P  F P PKV+S V+H      P  P   + L+++   AF +RRK LR 
Sbjct: 179 RATPRIVMHLPPGAFTPPPKVSSAVVHLTALSEPRYPADPKILERVVARAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +LK      E+ L  AGI+   RAE +S+E FC +  ++
Sbjct: 239 ALKGAAPDIEDRLLAAGIQPTDRAETVSLEQFCALARVM 277


>gi|84516318|ref|ZP_01003678.1| dimethyladenosine transferase [Loktanella vestfoldensis SKA53]
 gi|84510014|gb|EAQ06471.1| dimethyladenosine transferase [Loktanella vestfoldensis SKA53]
          Length = 281

 Score =  311 bits (797), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 122/280 (43%), Positives = 174/280 (62%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ Y + PKK +GQNFLLDLN+  +IA  +G L G  V+EIG GPG 
Sbjct: 1   MSGIDDLPPLREVIARYDLAPKKSLGQNFLLDLNLTARIARLAGDLAGADVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L +I+++ P RL++I+ DAL +D  ++    +PI+
Sbjct: 61  LTRGLLASGARRVLAIEKDPRCLPALAEIAARFPGRLQVIEGDALAIDPLEYLQ--APIK 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ     YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPQVWPPFWDSLTLMFQREVAERIVAQPGGKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++ ++ P VF P PKV S V+H      P  P     L  +   AF +RRK LR 
Sbjct: 179 RADAKIVMNLPPEVFSPPPKVHSAVVHLTALPAPRYPADPAVLNMVVAAAFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK +    E+ L + GI+   RAE + +E FC +   L 
Sbjct: 239 ALKSVSPAIEDHLQEVGIKPTERAEQVGLEAFCALARSLK 278


>gi|163739709|ref|ZP_02147117.1| dimethyladenosine transferase [Phaeobacter gallaeciensis BS107]
 gi|163743158|ref|ZP_02150540.1| dimethyladenosine transferase [Phaeobacter gallaeciensis 2.10]
 gi|161383575|gb|EDQ07962.1| dimethyladenosine transferase [Phaeobacter gallaeciensis 2.10]
 gi|161386939|gb|EDQ11300.1| dimethyladenosine transferase [Phaeobacter gallaeciensis BS107]
          Length = 281

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 122/280 (43%), Positives = 172/280 (61%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  ++++ +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MSAIDSLPPLREVIETHQLLARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ +EKD +  P L +IS  +P RL++I+ DAL+V+     +++ PIR
Sbjct: 61  LTRGLLAEGARRVLAVEKDSRCIPALAEISDAYPGRLQVIEGDALEVN--PLTHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI A   S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAVPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV S V+H      P  P    +L K+   AF +RRK LR 
Sbjct: 179 RADARIVLSLPPEAFSPPPKVHSAVVHLKALEAPRYPADAGTLNKVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +    E+ L+  GI    RAE + +E FC +   L 
Sbjct: 239 SLKSVSPDIEDHLNAVGIPPTERAEQVGLEAFCALARSLK 278


>gi|118600872|sp|Q28RD6|RSMA_JANSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 289

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 118/281 (41%), Positives = 177/281 (62%), Gaps = 5/281 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ + +  +K +GQNFLLDLN+  KIA  +G L  + V+E+G GPG 
Sbjct: 1   MVAIDGLPPLRDVIAAHGLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ +EKD +  P+L +I + +P RL+++  DAL++D+    ++ +P +
Sbjct: 61  LTRGLLAEGARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALELDWA--ADLQAPRK 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W++  +WPP WESLTL+FQ+EV ERI AQ  S  YGRL++L+ W
Sbjct: 119 IVANLPYNVGTELLVRWLTPASWPPPWESLTLMFQREVAERIVAQPGSKTYGRLAILSQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R    ++  + P  F P PKV S V+HF     P  P     L ++   AFG+RRK LR 
Sbjct: 179 RADPRIVMGLPPEAFTPPPKVHSAVVHFTALPAPRFPADARVLTRVVAAAFGQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +LK L    E+ L  AG++   RAE + +E FC +  ++ D
Sbjct: 239 ALKGLAPDIEDRLVAAGLKPTDRAEQVPLEGFCALARVMED 279


>gi|85710400|ref|ZP_01041464.1| dimethyladenosine transferase [Erythrobacter sp. NAP1]
 gi|85687578|gb|EAQ27583.1| dimethyladenosine transferase [Erythrobacter sp. NAP1]
          Length = 275

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 112/270 (41%), Positives = 160/270 (59%), Gaps = 3/270 (1%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             ++  ++ + +   K +GQNFLLD  +L +IA   G L G  V+E+G GPG LT+ LL 
Sbjct: 5   PPIRETIAKHGLSASKALGQNFLLDEQLLDRIAALPGDLSGARVLEVGPGPGGLTRALLR 64

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GAR V  IE D++  P L+++S   P +L +I+ DA+K+D     +   P  +++NLPY
Sbjct: 65  AGAR-VTAIEMDRRCLPALEELSEAFPGQLTVIEGDAMKLDHGAIMD-GEPFHVLSNLPY 122

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+GT L   W+S   WPP W SLTL+FQ+EV ERI AQ     YGRL+VL  WR KA + 
Sbjct: 123 NVGTALFVKWLSGQDWPPQWLSLTLMFQREVAERIVAQPGGSAYGRLAVLAQWRAKAKLA 182

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GG 246
             +    F P PKV S ++H  P   P      +L+++T+ AFG+RRK LRQSLK + G 
Sbjct: 183 MKVHRSAFTPPPKVMSAIVHVTPAEAPADVSSRTLERLTEAAFGQRRKMLRQSLKSVPGA 242

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            + L   GIE   RAE +S+ +F  +   +
Sbjct: 243 LDALQSVGIEETRRAETVSVAEFVALAKAV 272


>gi|260433483|ref|ZP_05787454.1| dimethyladenosine transferase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417311|gb|EEX10570.1| dimethyladenosine transferase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 280

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/280 (44%), Positives = 176/280 (62%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT  +    L+ +++ +++  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MTAIDTLPPLREVIARHQLSARKSLGQNFLLDLNLTAKIARQAGDLTQCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GARKV+ +EKD +    L++I++ +P RLEII  DAL++D     +++ PIR
Sbjct: 61  LTRGLLAEGARKVVAVEKDTRCIAALEEIAAAYPGRLEIINGDALEID--PLEHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ  S  YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGSKAYGRLAILAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R +A +   + P  F P PKV+S V+H      P  P    +L ++   AF +RRK LR 
Sbjct: 179 RAQAQIAMSLPPGAFTPPPKVSSAVVHLTALPEPRFPAEAGTLSRVVAAAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK L    E+ L  AGI+   RAE +S+E FC +   L 
Sbjct: 239 ALKGLAPDIEDRLTAAGIKPTERAEQVSLEAFCALARELR 278


>gi|146277163|ref|YP_001167322.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025]
 gi|166221694|sp|A4WRK3|RSMA_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|145555404|gb|ABP70017.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025]
          Length = 278

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 129/280 (46%), Positives = 175/280 (62%), Gaps = 6/280 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  KK +GQNFLLDLN+  KIA  +G L G  V+E+G GPG 
Sbjct: 1   MAAIDGLPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLKGSDVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L ++++  P RLE++  DAL+VD      ++ PIR
Sbjct: 61  LTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVA--ARLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W+S+  WPPFWESLTL+FQKEV ERI A+  S  YGRL++L+ W
Sbjct: 119 IVANLPYNVGTELLTRWLSSG-WPPFWESLTLMFQKEVAERIVARPGSKAYGRLALLSQW 177

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           RT+  ++  + P  F P P + S V+HF     P  P     L ++T  AF +RRK LR 
Sbjct: 178 RTEPKIVLTLPPEAFTPPPAIHSAVVHFTRLAGPRYPADAAVLSRVTAMAFNQRRKMLRS 237

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L    E +L  AGIE   RAE LS+E FC +   + 
Sbjct: 238 SLKGLAPDIETVLRDAGIEPTQRAEELSLEAFCALARRVA 277


>gi|75675874|ref|YP_318295.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255]
 gi|119365042|sp|Q3SRZ8|RSMA_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|74420744|gb|ABA04943.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255]
          Length = 287

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/280 (44%), Positives = 176/280 (62%), Gaps = 3/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+M +    L+ ++  + +  +K +GQNFLLDLN+  +IA ++G L   TV+EIG GPG 
Sbjct: 1   MSMIDDLPPLRDVIKRHALSARKSLGQNFLLDLNLTSRIARAAGPLQDATVVEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL +GA+ VI IE+D++    L++IS ++P RL II  DA   D       +   +
Sbjct: 61  LTRALLAVGAKHVIAIERDERALGALEEISDRYPGRLTIINADATDFDPRPLLGTTR-AK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+S + WPP+++ + L+FQ+EV ERI A++N   YGRL VL+ W
Sbjct: 120 IVANLPYNIATALLIRWLSIEPWPPWYDVMVLMFQREVAERIVARENEDAYGRLGVLSNW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  ++FDISP  F P P+VTS+V+  IP  NP PC   SL+++   AFG RRK LRQS
Sbjct: 180 RAETKILFDISPAAFVPQPQVTSSVVRLIPRYNPEPCDRRSLEQVAAAAFGHRRKMLRQS 239

Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK L     +L   AGI+   RAE +SI  F  +   L  
Sbjct: 240 LKSLPADPASLAAAAGIDPTRRAETVSISGFAAMARELAS 279


>gi|89070361|ref|ZP_01157668.1| dimethyladenosine transferase [Oceanicola granulosus HTCC2516]
 gi|89044008|gb|EAR50183.1| dimethyladenosine transferase [Oceanicola granulosus HTCC2516]
          Length = 281

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 122/280 (43%), Positives = 167/280 (59%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ + +  KK +GQNFLLDLN+  KIA ++G L    V+EIG GPG 
Sbjct: 1   MAGIDDLPPLREVIATHGLSAKKALGQNFLLDLNLTAKIARAAGDLTAADVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR V+ IEKD +  P L +I++ +P RL +++ DAL  D     +++ P R
Sbjct: 61  LTRGLLASGARHVVAIEKDPRCLPALAEIAAAYPGRLTVLEGDALATDAT--VHLTPPYR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++  +WPP WESLTL+FQKEV +RI A+  S  YGRL++L  W
Sbjct: 119 IAANLPYNVGTELLVRWLTPPSWPPAWESLTLMFQKEVAQRIVARPGSKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV+S V+       P  P    +L +IT  AF +RRK LR 
Sbjct: 179 RADAQIVMSLPPGAFTPPPKVSSAVVRLDALPQPRYPADAATLSRITATAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L    E  L   GI    RAE + +E FC +   L 
Sbjct: 239 SLKGLAPDIERHLEAVGIAPTDRAEQIDLERFCALARRLA 278


>gi|89054300|ref|YP_509751.1| dimethyladenosine transferase [Jannaschia sp. CCS1]
 gi|88863849|gb|ABD54726.1| dimethyladenosine transferase [Jannaschia sp. CCS1]
          Length = 305

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 118/281 (41%), Positives = 177/281 (62%), Gaps = 5/281 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ + +  +K +GQNFLLDLN+  KIA  +G L  + V+E+G GPG 
Sbjct: 17  MVAIDGLPPLRDVIAAHGLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGG 76

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ +EKD +  P+L +I + +P RL+++  DAL++D+    ++ +P +
Sbjct: 77  LTRGLLAEGARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALELDWA--ADLQAPRK 134

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W++  +WPP WESLTL+FQ+EV ERI AQ  S  YGRL++L+ W
Sbjct: 135 IVANLPYNVGTELLVRWLTPASWPPPWESLTLMFQREVAERIVAQPGSKTYGRLAILSQW 194

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R    ++  + P  F P PKV S V+HF     P  P     L ++   AFG+RRK LR 
Sbjct: 195 RADPRIVMGLPPEAFTPPPKVHSAVVHFTALPAPRFPADARVLTRVVAAAFGQRRKMLRA 254

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +LK L    E+ L  AG++   RAE + +E FC +  ++ D
Sbjct: 255 ALKGLAPDIEDRLVAAGLKPTDRAEQVPLEGFCALARVMED 295


>gi|84684875|ref|ZP_01012775.1| dimethyladenosine transferase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667210|gb|EAQ13680.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2654]
          Length = 280

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 124/279 (44%), Positives = 176/279 (63%), Gaps = 5/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + ++ KK +GQNFLLDLN+  KIA  +G L    V+E+G GPG 
Sbjct: 1   MSAIDGLPPLREVIATHGLVAKKSLGQNFLLDLNLTAKIARQAGDLSACDVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ +EKD +    L +IS  +P RLE++  DAL++D     +++ PIR
Sbjct: 61  LTRGLLAEGARRVLAVEKDARAMSALAEISEAYPGRLEVLNADALEID--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W++  TWPP W SLTL+FQKEV ERI A+  S  YGRL++L+ W
Sbjct: 119 IVANLPYNVGTELLTRWLTPPTWPPAWSSLTLMFQKEVAERIVAKPKSKAYGRLAILSQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           RT A ++ ++ P  F P PK+ S V+H      P  P    +L+++T  AF +RRK LR 
Sbjct: 179 RTDARIVMELPPEAFTPPPKIRSAVVHLTALPEPRYPANAATLQRVTATAFQQRRKMLRA 238

Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           SLK L  G E LL    I+   RAE + +E FC +   L
Sbjct: 239 SLKGLAPGIEALLESVDIKPTARAEEIDLEHFCALARAL 277


>gi|332558339|ref|ZP_08412661.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Rhodobacter sphaeroides WS8N]
 gi|332276051|gb|EGJ21366.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Rhodobacter sphaeroides WS8N]
          Length = 278

 Score =  309 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 128/280 (45%), Positives = 175/280 (62%), Gaps = 6/280 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  KK +GQNFLLDLN+  KIA  +G L    V+E+G GPG 
Sbjct: 1   MASIDGLPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L ++++  P RLE++  DAL+VD      ++ PIR
Sbjct: 61  LTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVA--ARLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W+S+D WPPFWESLTL+FQKEV ERI A+  S  YGRL++L+ W
Sbjct: 119 IVANLPYNVGTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQW 177

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239
           RT   ++  + P  F P P + S V+HF     P  P   + L ++T  AF +RRK LR 
Sbjct: 178 RTDPKIVLTLPPEAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRS 237

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L    E +L +AGIE   RAE + +E FC +   L 
Sbjct: 238 SLKGLVPDIETVLREAGIEPTQRAEEIPLEGFCALARRLA 277


>gi|77463462|ref|YP_352966.1| dimethyladenosine transferase [Rhodobacter sphaeroides 2.4.1]
 gi|119365057|sp|Q3J2B9|RSMA_RHOS4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|77387880|gb|ABA79065.1| dimethyladenosine transferase [Rhodobacter sphaeroides 2.4.1]
          Length = 278

 Score =  309 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 128/280 (45%), Positives = 175/280 (62%), Gaps = 6/280 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  KK +GQNFLLDLN+  KIA  +G L    V+E+G GPG 
Sbjct: 1   MASIDGLPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L ++++  P RLE++  DAL+VD      ++ PIR
Sbjct: 61  LTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVA--ARLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W+S+D WPPFWESLTL+FQKEV ERI A+  S  YGRL++L+ W
Sbjct: 119 IVANLPYNVGTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQW 177

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239
           RT   ++  + P  F P P + S V+HF     P  P   + L ++T  AF +RRK LR 
Sbjct: 178 RTDPKIVLTLPPDAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRS 237

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L    E +L +AGIE   RAE + +E FC +   L 
Sbjct: 238 SLKGLVPDIETVLREAGIEPTQRAEEIPLEGFCALARRLA 277


>gi|221639320|ref|YP_002525582.1| dimethyladenosine transferase [Rhodobacter sphaeroides KD131]
 gi|254807881|sp|B9KST5|RSMA_RHOSK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|221160101|gb|ACM01081.1| Dimethyladenosine transferase [Rhodobacter sphaeroides KD131]
          Length = 278

 Score =  308 bits (790), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 128/280 (45%), Positives = 175/280 (62%), Gaps = 6/280 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  KK +GQNFLLDLN+  KIA  +G L    V+E+G GPG 
Sbjct: 1   MASIDGLPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L ++++  P RLE++  DAL+VD      ++ PIR
Sbjct: 61  LTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDLA--ARLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W+S+D WPPFWESLTL+FQKEV ERI A+  S  YGRL++L+ W
Sbjct: 119 IVANLPYNVGTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQW 177

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239
           RT   ++  + P  F P P + S V+HF     P  P   + L ++T  AF +RRK LR 
Sbjct: 178 RTDPKIVLTLPPEAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRS 237

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L    E +L +AGIE   RAE + +E FC +   L 
Sbjct: 238 SLKGLVPDIETVLREAGIEPTQRAEEIPLEGFCALARRLA 277


>gi|296282381|ref|ZP_06860379.1| dimethyladenosine transferase [Citromicrobium bathyomarinum JL354]
          Length = 274

 Score =  308 bits (790), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 113/278 (40%), Positives = 159/278 (57%), Gaps = 6/278 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT       L+ +++ + +   K +GQNFL D  +L +IA   G L G  V+E+G GPG 
Sbjct: 1   MT---DLPPLREVIAAHGLSASKALGQNFLFDEQLLARIAAVPGDLSGRNVLEVGPGPGG 57

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA KV  IE D++  P L ++    P +L +I+ DALK+D +  F+   P  
Sbjct: 58  LTRALLRAGA-KVTAIEMDRRCLPALAELGDAFPGQLTVIEGDALKIDHDAIFD-GEPYA 115

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I++NLPYN+GT L   W+  + WPP W SLTL+FQ+EV +RI AQ     YGRL+VL  W
Sbjct: 116 ILSNLPYNVGTALFTRWMGGEAWPPNWTSLTLMFQQEVAQRIVAQPGGSAYGRLAVLAQW 175

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R  A +   +    F P PKV S ++H  P   P       L+++T  AFG+RRK LRQS
Sbjct: 176 RGTAKLAMKVHRSAFTPPPKVMSAIVHVTPAAMPDGVSAAKLEQVTAAAFGQRRKMLRQS 235

Query: 241 LKRL-GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LK + G  + L   GI+   RAE L + +F  +   L+
Sbjct: 236 LKGVPGALDALETLGIDPQRRAETLDVGEFVVLARALS 273


>gi|260576766|ref|ZP_05844751.1| dimethyladenosine transferase [Rhodobacter sp. SW2]
 gi|259021018|gb|EEW24329.1| dimethyladenosine transferase [Rhodobacter sp. SW2]
          Length = 280

 Score =  308 bits (790), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 124/280 (44%), Positives = 177/280 (63%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ + ++ KK +GQNFLLDLN+  +IA ++G L G  V+E+G GPG 
Sbjct: 1   MAAIDGLPPLRAVIAAHDLVAKKQLGQNFLLDLNLTARIARAAGDLSGCDVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ +EKD +  P L +I++ +P RLE++Q DAL +D     ++  PI+
Sbjct: 61  LTRGLLAEGARRVLAVEKDARCLPALAEIAAAYPGRLEVMQGDALALDVA--AHLVPPIK 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W++   WPPFW+SLTL+FQKEV ERI A+     YGRL++L+ W
Sbjct: 119 IVANLPYNVGTELLIRWLTPAHWPPFWDSLTLMFQKEVAERIVAKPGPKAYGRLALLSQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQ 239
           R    ++  + P  F P+PKV S V+HF     P     E+ L ++T  AF +RRK LR 
Sbjct: 179 RADPKIVLTLPPEAFTPAPKVHSAVVHFRRLDAPRFAADEAVLGRVTAMAFNQRRKMLRS 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L    E  L  AGIE   RAE +S+E FC +   + 
Sbjct: 239 SLKALAPDIEVRLRAAGIEPTARAEEISLEGFCALAREVA 278


>gi|170746986|ref|YP_001753246.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM
           2831]
 gi|226732597|sp|B1LVB8|RSMA_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|170653508|gb|ACB22563.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM
           2831]
          Length = 292

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 124/283 (43%), Positives = 180/283 (63%), Gaps = 4/283 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + + PKK +GQNFL DLN+  +IA ++G L G+TV+E+G GPG 
Sbjct: 1   MSAGDGLPPLREVVARHGLEPKKALGQNFLYDLNLTGRIARAAGPLAGVTVVEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA +V+ IE+D +  P L +I++ +P RLE++  DAL  D        +P R
Sbjct: 61  LTRALLAEGAARVVAIERDPRALPALAEIAAHYPGRLEVVDADALAFDPRPLVG-DAPAR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTG 179
           I+ANLPYN+GT LL  W+  + WPP+W+   L+FQ+EV ERI A       YGRL VL G
Sbjct: 120 IVANLPYNVGTALLTGWLDGEAWPPWWDQAVLMFQREVAERIVAGPEERADYGRLGVLCG 179

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           WRT+A ++FD+SP  F P PKVTS+V+  +P   P+PC   +L+ +T+ AFG+RRK LRQ
Sbjct: 180 WRTEAEILFDVSPSAFVPPPKVTSSVVRLVPRAQPLPCRAGALEAVTRAAFGQRRKMLRQ 239

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           SLK L     +LL  AG+    RAE + +  F  + N    ++
Sbjct: 240 SLKALTPAAGDLLAAAGLSETARAEEIPVAGFVDLANRWDAHR 282


>gi|86749595|ref|YP_486091.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2]
 gi|119365054|sp|Q2IX80|RSMA_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|86572623|gb|ABD07180.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2]
          Length = 287

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 124/283 (43%), Positives = 183/283 (64%), Gaps = 3/283 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+  +IA ++G LD +TV+EIG GPG 
Sbjct: 1   MSAIDGLPPLRDVIKRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+VI IE+D++    L++I++ +P RLEI+  DA++ D        +  R
Sbjct: 61  LTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMEFDPRPLLG-GARAR 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+ A+ WPP+++ + L+FQ+EV +RI A ++   YGRL+VL+ W
Sbjct: 120 IVANLPYNIATPLLIGWLCAEPWPPWYDMMVLMFQREVAQRIVACEDDDAYGRLAVLSNW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R    M+FDI+P  F P PKVTS+V+  +P   P PC   +L+++   AFG+RRK LRQS
Sbjct: 180 RCDTGMLFDIAPSAFVPQPKVTSSVVRLVPRSAPEPCNRAALEQVAAAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           LK LG +   L   AGI+   RAE + +  F  + N L D +D
Sbjct: 240 LKALGVDPARLAAAAGIDPTRRAETVPVSGFVAMANELIDIRD 282


>gi|332185231|ref|ZP_08386980.1| dimethyladenosine transferase [Sphingomonas sp. S17]
 gi|332014955|gb|EGI57011.1| dimethyladenosine transferase [Sphingomonas sp. S17]
          Length = 274

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 115/277 (41%), Positives = 160/277 (57%), Gaps = 5/277 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        L+ +++ + +   K +GQNFL D  +L +IA   G L    V+EIG GPG 
Sbjct: 1   MDPITPLPPLRDVIARHGLSASKSLGQNFLFDGQLLARIAAIPGDLTDQEVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  G R V  IE+D++  P L ++S   P RL +I+ DAL+V+  + F       
Sbjct: 61  LTRALLMAGGR-VTAIERDRRCIPALAELSEAFPGRLRVIEGDALRVNAPELFEGKP--H 117

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I++NLPYN+GT LL  W+S   W P+W+S TL+FQKEV ERI A  +   YGRL+VLT W
Sbjct: 118 IVSNLPYNVGTPLLVGWLSGA-WLPWWQSCTLMFQKEVAERIVAAADQSAYGRLAVLTQW 176

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R++A +   +    F P PKV S V+H  P   P      +L+++T  AFG+RRK LRQS
Sbjct: 177 RSQARIAMPVHRSAFTPPPKVMSAVVHITPAPAPEGVTFRTLERLTAAAFGQRRKMLRQS 236

Query: 241 LKRL-GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK + G    L   GI+   RAE LS+ +F  +   L
Sbjct: 237 LKPIPGAVEALESIGIDPARRAETLSVAEFVALARAL 273


>gi|254437873|ref|ZP_05051367.1| dimethyladenosine transferase [Octadecabacter antarcticus 307]
 gi|198253319|gb|EDY77633.1| dimethyladenosine transferase [Octadecabacter antarcticus 307]
          Length = 279

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 125/280 (44%), Positives = 173/280 (61%), Gaps = 6/280 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT+ +   +LK ++  + +  +K +GQNFLLDLN+  KIA  SG  +   V+EIG GPG 
Sbjct: 1   MTI-DSLPTLKQVIDSHGLAARKSLGQNFLLDLNLTAKIARLSGRNEDHDVLEIGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GAR V+ IEKD +  P L +I S +P+RL ++  DAL  D     +++ PIR
Sbjct: 60  LTRGLLSEGARHVLAIEKDDRCLPALAEIQSAYPDRLTVLCGDAL--DINPLDHLTPPIR 117

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYNIGT LL  W++   WPP+W+SLTL+FQ+EV +RITA   S  YGRL++L  W
Sbjct: 118 VAANLPYNIGTELLIRWLTPQDWPPYWDSLTLMFQREVAQRITAAPGSKAYGRLAILCQW 177

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           RT A ++ ++ P  F P PKV+S V+H      P  P     L+ IT  AF +RRK LR 
Sbjct: 178 RTDAQIVMNLPPEAFSPPPKVSSAVVHLTALAKPRFPADANMLQHITATAFNQRRKMLRS 237

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L    E+ L  A I+   RAE + ++ FC +   L 
Sbjct: 238 SLKGLSPDIEDHLIAADIKPTDRAEQIDVQRFCALARSLK 277


>gi|87198908|ref|YP_496165.1| dimethyladenosine transferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|119365043|sp|Q2G9Z2|RSMA_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|87134589|gb|ABD25331.1| dimethyladenosine transferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 273

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/278 (43%), Positives = 162/278 (58%), Gaps = 7/278 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT       L+ +++ + +   K +GQNFL D  +L +IA   G L G  V+E+G GPG 
Sbjct: 1   MT---DLPPLRDVVNRHGLYATKALGQNFLFDEQLLDRIARVPGKLKGENVLEVGPGPGG 57

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA KV  IE D++  P L +++   P +L +I+ DA K+  E  F+   P  
Sbjct: 58  LTRALLRAGA-KVTAIEMDKRCLPALAELADAFPGQLTVIEGDATKIAPETLFD--GPWH 114

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT+L   W+S   WPP W+SLTL+FQ EV ERI AQ  +  YGRL+VL  W
Sbjct: 115 VAANLPYNVGTQLFTGWLSGQDWPPQWKSLTLMFQLEVAERIVAQPGTDAYGRLAVLAQW 174

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R    +   +    F P PKV S +IH  P   P       L+++T+ AFG+RRK LRQS
Sbjct: 175 RATPRIATRVHRSAFTPPPKVMSAIIHVEPAAMPEGVSARMLERVTEAAFGQRRKMLRQS 234

Query: 241 LKRL-GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LK L G  + L   GI+   RAE LS+EDF  I  +LT
Sbjct: 235 LKGLPGALDALETLGIDPQRRAETLSVEDFVAIARLLT 272


>gi|319898726|ref|YP_004158819.1| dimethyladenosine transferase [Bartonella clarridgeiae 73]
 gi|319402690|emb|CBI76236.1| dimethyladenosine transferase [Bartonella clarridgeiae 73]
          Length = 276

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 137/276 (49%), Positives = 190/276 (68%), Gaps = 2/276 (0%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + +    L+ +++ +K+   K +GQNF+ DLN+  KIA  +G+++G  ++EIG GPG LT
Sbjct: 2   LIDNLPPLRNVINTHKLQANKSLGQNFIFDLNLTTKIAHQAGNIEGKPILEIGPGPGGLT 61

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121
           + LL  GA  V  IE+D++  P L +I   +P +L++I +DALK DF K F       RI
Sbjct: 62  RALLAKGA-IVTAIERDERCMPALLEIEKHYPQKLKLIFNDALKQDFSKLFEAYPEKPRI 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           IANLPYNIGT+LL NW+   +WPPF+ES+TL+FQ+EV +RITA   SP+Y RLS+LTGWR
Sbjct: 121 IANLPYNIGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATSQSPYYSRLSILTGWR 180

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           + A + FDI P  F P PKVTS+V+H IP L P+ C  + L  +T+ AFG+RRK LRQS 
Sbjct: 181 SIAKIAFDIPPQAFIPEPKVTSSVVHIIPRLQPLACSTQKLSLVTKIAFGQRRKMLRQSF 240

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           K +GGE LL +AGI+   RAE LSI +F  + N++T
Sbjct: 241 KTIGGETLLEKAGIDGTRRAETLSISEFVTLANLIT 276


>gi|319405488|emb|CBI79107.1| dimethyladenosine transferase [Bartonella sp. AR 15-3]
          Length = 276

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 139/276 (50%), Positives = 192/276 (69%), Gaps = 2/276 (0%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + +    L+ +++ YK+   K +GQNF+L+LN+  KIA  +G+++G  V+EIG GPG LT
Sbjct: 2   LIDNLPPLRNVINKYKLQANKSLGQNFILNLNLTTKIAHQAGNIEGKPVLEIGPGPGGLT 61

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121
           + LL  GA  V  IE+D++  P L +I   +P +L++I +DALK DF K F       RI
Sbjct: 62  RALLAKGA-IVTAIERDERCMPALLEIKEHYPQKLKLIFNDALKEDFSKLFEAYPEKPRI 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           IANLPYNIGT+LL NW+   +WPPF+ES+TL+FQ+EV +RITA   SP+YGRLS+LTGWR
Sbjct: 121 IANLPYNIGTQLLLNWLLTKSWPPFYESMTLMFQREVAKRITATSQSPYYGRLSILTGWR 180

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           + A + FDI P  F P PKVTS+V+H IP   P+ C  + L  +T+ AFG+RRK LRQSL
Sbjct: 181 SIAKIAFDIPPQAFIPEPKVTSSVVHIIPRSQPLACSTKKLSLVTKIAFGQRRKMLRQSL 240

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           K +GG+ LL +AGI+   RAE LSI +F  + N++T
Sbjct: 241 KTIGGKTLLEKAGIDGTRRAETLSIFEFVTLANLIT 276


>gi|110680311|ref|YP_683318.1| dimethyladenosine transferase [Roseobacter denitrificans OCh 114]
 gi|118600895|sp|Q164G1|RSMA_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|109456427|gb|ABG32632.1| dimethyladenosine transferase, putative [Roseobacter denitrificans
           OCh 114]
          Length = 280

 Score =  307 bits (786), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/280 (43%), Positives = 174/280 (62%), Gaps = 5/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L++++  + +  +K MGQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MSTIDHLPPLRSVIRDHDLSARKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L +I++ +P RLE++  DAL++D      ++ PIR
Sbjct: 61  LTRGLLAQGARRVLAIEKDARCLPALAEIAAVYPGRLEVMNGDALEID--PLSALTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYN+GT LL  W++   WPP+W+SLTL+FQ+EV ERI A+  S  YGRL++L  W
Sbjct: 119 VAANLPYNVGTELLVRWLTPQIWPPYWQSLTLMFQREVAERIVARPGSKAYGRLAILAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R  A ++  + P  F P PKV+S+V+       P  P     L K+   AF +RRK LR 
Sbjct: 179 RADARIVMQLPPDAFTPPPKVSSSVVQITALPAPRYPADPYVLSKVVAMAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK LG   E+ L  AGIE   RAE +S+E FC +   + 
Sbjct: 239 ALKGLGPDIEDRLLAAGIEPTERAERVSLEGFCALARAVA 278


>gi|288958701|ref|YP_003449042.1| dimethyladenosine transferase [Azospirillum sp. B510]
 gi|288911009|dbj|BAI72498.1| dimethyladenosine transferase [Azospirillum sp. B510]
          Length = 291

 Score =  307 bits (786), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/277 (43%), Positives = 167/277 (60%), Gaps = 6/277 (2%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+ +++ + +  +K +GQNFLLDLN+  +IA S+    G T IE+G GPG LT+ LL 
Sbjct: 9   PPLRDVIARFGLEARKALGQNFLLDLNLTGRIARSANLPAGTTAIEVGPGPGGLTRALLA 68

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             A KVI IE+D++F   L+D+      RL I++ DAL VD E+     +P  I+ANLPY
Sbjct: 69  TNAVKVIAIERDRRFIEALQDVIEAAQGRLSIVEADALTVDPEELA--PAPRAIVANLPY 126

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+ T LL  W++       + SLTL+FQKEV +R+ A+  S  YGRLSV+T WR+ A ++
Sbjct: 127 NVATPLLLGWLAR---IDAYVSLTLMFQKEVADRLVAKPGSKAYGRLSVITQWRSDARVL 183

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-G 246
           F++ P  F P PKV STV+H  P  NP P    +L+++T  AFG+RRK LRQSLK LG  
Sbjct: 184 FNLPPRAFTPPPKVESTVVHLTPRANPEPADWRALEQVTAAAFGQRRKMLRQSLKSLGNA 243

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           E LL + GI    RAE + +  F  +          A
Sbjct: 244 EALLEETGIAPTARAEEIDVAGFAALARAFRSWTPAA 280


>gi|254452280|ref|ZP_05065717.1| dimethyladenosine transferase [Octadecabacter antarcticus 238]
 gi|198266686|gb|EDY90956.1| dimethyladenosine transferase [Octadecabacter antarcticus 238]
          Length = 279

 Score =  307 bits (786), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 124/280 (44%), Positives = 172/280 (61%), Gaps = 6/280 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT+ +   +LK ++  + +  +K +GQNFLLDLN+  KIA  SG  +   ++EIG GPG 
Sbjct: 1   MTI-DSLPTLKQVIDSHGLAARKSLGQNFLLDLNLTAKIARLSGRNEDHDILEIGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR ++ IEKD +  P L DI + +P+RL ++  DAL  D     +++ PIR
Sbjct: 60  LTRGLLAEGARHILAIEKDDRCLPALADIQAAYPDRLTVLCGDAL--DINPLDHLTPPIR 117

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + ANLPYNIGT LL  W++   WPP+W+SLTL+FQ+EV +RITA   S  YGRL++L  W
Sbjct: 118 VAANLPYNIGTELLVRWLTPQDWPPYWDSLTLMFQREVAQRITAAPGSKAYGRLAILCQW 177

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           RT A ++ ++ P  F P PKV+S V+H      P  P     L+ IT  AF +RRK LR 
Sbjct: 178 RTDAQIVMNLPPEAFSPPPKVSSAVVHLTALAEPRFPADANMLQHITATAFNQRRKMLRS 237

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L    E+ L  A I+   RAE + +E FC +   L 
Sbjct: 238 SLKGLSPDIEDHLIAANIKPTDRAEQIDVERFCALARSLK 277


>gi|170743207|ref|YP_001771862.1| dimethyladenosine transferase [Methylobacterium sp. 4-46]
 gi|168197481|gb|ACA19428.1| dimethyladenosine transferase [Methylobacterium sp. 4-46]
          Length = 285

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 123/276 (44%), Positives = 181/276 (65%), Gaps = 4/276 (1%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L+ ++  + ++P+K +GQNFL DLN+  +IA ++G L G+TV+E+G GPG LT+ 
Sbjct: 9   DGLPPLREVVRAHDLMPRKALGQNFLFDLNLTGRIARAAGPLAGVTVVEVGPGPGGLTRA 68

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL  GA +V+ IE+D++  P L +I++ +P RL ++Q DAL  D         P RI+AN
Sbjct: 69  LLAEGAARVVAIERDERALPALAEIAAHYPGRLTVVQADALAFDPRPLVGAG-PARIVAN 127

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTGWRTK 183
           LPYN+GT LL  W++A+ WPP+++SLTL+FQ+EV ERI A +    +YGRL VL GWRT+
Sbjct: 128 LPYNVGTALLTGWLAAEAWPPWFDSLTLMFQREVAERIVADERDRANYGRLGVLCGWRTQ 187

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           A ++FD+ P  F P PKVTS+V+  +P   P+PC + +L+ +T  AFG+RRK LRQSL+ 
Sbjct: 188 ARILFDVPPSAFVPPPKVTSSVVRLVPRAAPLPCRVRALEAVTGAAFGQRRKMLRQSLRA 247

Query: 244 LGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT 277
              +   LL  AGI    RAE + +  F  +   L 
Sbjct: 248 ATPDPGPLLAAAGIPETARAEEVPVAGFVAMARALA 283


>gi|126462317|ref|YP_001043431.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17029]
 gi|166221693|sp|A3PJZ3|RSMA_RHOS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|126103981|gb|ABN76659.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17029]
          Length = 278

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 127/280 (45%), Positives = 175/280 (62%), Gaps = 6/280 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  K+ +GQNFLLDLN+  KIA  +G L    V+E+G GPG 
Sbjct: 1   MASIDGLPPLREVIRAHGLSAKRQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +  P L ++++  P RLE++  DAL+VD      ++ PIR
Sbjct: 61  LTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVA--ARLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYN+GT LL  W+S+D WPPFWESLTL+FQKEV ERI A+  S  YGRL++L+ W
Sbjct: 119 IVANLPYNVGTELLTRWLSSD-WPPFWESLTLMFQKEVAERIVAKPGSKAYGRLALLSQW 177

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239
           RT   ++  + P  F P P + S V+HF     P  P   + L ++T  AF +RRK LR 
Sbjct: 178 RTDPKIVLTLPPDAFTPPPSIHSAVVHFTRLEAPRHPADPKVLARVTAMAFNQRRKMLRS 237

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK L    E +L +AGIE   RAE + +E FC +   L 
Sbjct: 238 SLKGLVPDIETVLREAGIEPTQRAEEIPLEGFCALARRLA 277


>gi|126736396|ref|ZP_01752138.1| dimethyladenosine transferase [Roseobacter sp. CCS2]
 gi|126714217|gb|EBA11086.1| dimethyladenosine transferase [Roseobacter sp. CCS2]
          Length = 278

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/280 (43%), Positives = 170/280 (60%), Gaps = 5/280 (1%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M +    L+ +++ + +  KK +GQNFLLDLN+  KIA  +G L G  V+EIG GPG LT
Sbjct: 1   MIDDLPPLREVIATHDLAAKKSLGQNFLLDLNLTAKIARLAGDLSGADVLEIGPGPGGLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL  GAR+V+ IEKD +  P L DI++++P RL+ I  DAL V+     ++S PI+I 
Sbjct: 61  RGLLAEGARRVLAIEKDPRCMPALADIAARYPGRLQTINGDALTVN--PLEHLSQPIKIA 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+GT LL  W++   WPPFW+ LTL+FQ+EV +RI A   S  YGRL++L  WRT
Sbjct: 119 ANLPYNVGTELLVRWLTPPEWPPFWDCLTLMFQREVAQRIVATPGSKAYGRLALLAQWRT 178

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSL 241
              ++ D+ P  F P PKV S V+H      P       +L K+   AF +RRK LR +L
Sbjct: 179 DPKIVMDLPPEAFSPPPKVNSAVVHLTALPAPRFAADPGTLNKVVAAAFNQRRKMLRSAL 238

Query: 242 KRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           K +    E+ L   GI+   RAE + +E FC +   L  +
Sbjct: 239 KSVSPDIEDHLIATGIKPTERAEQVGLEAFCALARQLNAH 278


>gi|121602690|ref|YP_988818.1| dimethyladenosine transferase [Bartonella bacilliformis KC583]
 gi|166221646|sp|A1US65|RSMA_BARBK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120614867|gb|ABM45468.1| dimethyladenosine transferase [Bartonella bacilliformis KC583]
          Length = 276

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 140/278 (50%), Positives = 189/278 (67%), Gaps = 3/278 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M ++N    L+ +++ Y +   K +GQNFL DLN+  KIA  +G+++G  VIEIG GPG 
Sbjct: 1   MPIDN-LPPLREVINAYGLQANKSLGQNFLFDLNLTSKIARQAGNIEGKPVIEIGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PI 119
           LT+ LL  GA  V VIE+D++  P L +I   +P +L +I DDALK D  K         
Sbjct: 60  LTRALLAKGA-IVTVIERDKRCLPALLEIEKHYPKKLNLIFDDALKQDLSKLSETYPEKP 118

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RIIANLPYNIGT+LL NW+   +WPPF+ES+TL+FQ+EV +RITA   SPHY RLSVL G
Sbjct: 119 RIIANLPYNIGTQLLLNWLLTTSWPPFYESMTLMFQREVAKRITATPQSPHYSRLSVLAG 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           WRT A + FD+ P  F P+PKVTS+VI+ IP   P+ C ++ L  +T+ AFG++RK LRQ
Sbjct: 179 WRTIAKIAFDVPPQAFIPAPKVTSSVINIIPRPQPLACSVQKLSLVTKVAFGEKRKMLRQ 238

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +GG+ LL +AGI+   RAE L I +F  + N++T
Sbjct: 239 SLKTIGGKELLEKAGIDETRRAETLLIPEFITLANLMT 276


>gi|126728792|ref|ZP_01744607.1| dimethyladenosine transferase [Sagittula stellata E-37]
 gi|126710722|gb|EBA09773.1| dimethyladenosine transferase [Sagittula stellata E-37]
          Length = 279

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/279 (43%), Positives = 171/279 (61%), Gaps = 5/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ +++  KK +GQNFLLDLN+  +IA   G L  + V+E+G GPG 
Sbjct: 1   MSQIDNLPPLREVIATHQLSAKKALGQNFLLDLNLTARIARIPGDLSQMDVLEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GAR+V+ IEKD +  P L +I+  +P RLE+I+ DAL++D     ++  PI 
Sbjct: 61  LTRGLLSGGARRVLAIEKDARCLPALAEIADAYPGRLEVIEGDALQID--PLAHLEPPIA 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I ANLPYN+GT LL  W++   WPP W SLTL+FQKEV ERI AQ     YGRL++L+ W
Sbjct: 119 ICANLPYNVGTELLTRWLTPPEWPPVWSSLTLMFQKEVAERIVAQPGGKAYGRLAILSQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           RT A +   + P  F P PKV+S V+H      P  P   ++L++I   AF +RRK LR 
Sbjct: 179 RTDARIALTLPPGAFTPPPKVSSAVVHLTALPAPRYPANPKTLERIVAMAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +LK      E+ L   GI    RAE +S+E FC +    
Sbjct: 239 ALKGAAPDIEDRLRSVGIPPTERAEQVSLEAFCALARTF 277


>gi|217978375|ref|YP_002362522.1| dimethyladenosine transferase [Methylocella silvestris BL2]
 gi|217503751|gb|ACK51160.1| dimethyladenosine transferase [Methylocella silvestris BL2]
          Length = 288

 Score =  305 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 125/281 (44%), Positives = 172/281 (61%), Gaps = 4/281 (1%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
            +    L+ I++ + +  KK +GQNFL DLN+  +IA ++G  D   ++E+G GPG LT+
Sbjct: 5   TDDLPPLREIVAAFGLDAKKSLGQNFLFDLNLTGRIARAAGPQDAALILEVGPGPGGLTR 64

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
            LLT GARKVI IE+D++  P L+ I+  +P RLEII  DAL  D       + P RI A
Sbjct: 65  ALLTEGARKVIAIERDERCLPALRQIADHYPGRLEIIAGDALGADVAALAGDARPARICA 124

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTGWRT 182
           NLPYN+ T LL  WI ++ WPP+++ L L+FQ+EV ERI A       YGRL+VL  WR 
Sbjct: 125 NLPYNVATALLTRWIESEPWPPWFDRLILMFQREVAERIVATPAQRAAYGRLAVLCNWRC 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +  ++FD+SP  F P PKVTS+V+   P   P+ C    L  +TQ AFG+RRK LRQSLK
Sbjct: 185 ETRILFDVSPSAFTPPPKVTSSVVELRPRAAPLACEARLLSLVTQAAFGQRRKMLRQSLK 244

Query: 243 RLG---GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            LG      +L  AG++   RAE + IE F  +   L + +
Sbjct: 245 SLGADDAAAILAAAGVDPTARAEEIDIEGFAALARALGERR 285


>gi|149201838|ref|ZP_01878812.1| dimethyladenosine transferase [Roseovarius sp. TM1035]
 gi|149144886|gb|EDM32915.1| dimethyladenosine transferase [Roseovarius sp. TM1035]
          Length = 283

 Score =  305 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 118/279 (42%), Positives = 167/279 (59%), Gaps = 5/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        L  +++ + +  +K +GQNFLLDLN+  KIA  +G L    V+EIG GPG 
Sbjct: 1   MRALEDLPPLAKVIAAHGLSARKSLGQNFLLDLNLTSKIARQAGDLGDCDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR V+ IEKD +  P L++I+   P RL ++  DAL +D     +++ PIR
Sbjct: 61  LTRGLLMEGARHVLAIEKDSRCLPALQEIADAAPGRLTVLNADALDLD--PLAHLTPPIR 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +++NLPYN+GT LL  W++   WPPFW+SLTL+FQ+EV ERI AQ     YGRL++L  W
Sbjct: 119 VVSNLPYNVGTELLIRWLTPPEWPPFWQSLTLMFQREVAERIVAQPGGKAYGRLALLAQW 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           R    +M  + P  F P PKV+S V+H      P  P   + L+++   AF +RRK LR 
Sbjct: 179 RAVPRIMMHLPPGAFTPPPKVSSAVVHLTALPEPRYPADPKILERVVARAFNQRRKMLRA 238

Query: 240 SLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +LK      E+ L  AGI+   RAE +S+E FC +   +
Sbjct: 239 ALKGAAPDIEDRLLSAGIKPTDRAETVSLEQFCALARRM 277


>gi|296447968|ref|ZP_06889875.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b]
 gi|296254535|gb|EFH01655.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b]
          Length = 287

 Score =  305 bits (782), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 124/285 (43%), Positives = 175/285 (61%), Gaps = 9/285 (3%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M +    L+ +++ + ++  K +GQNFL DLN+  +IA ++G L+G T++EIG GPG LT
Sbjct: 1   MIDDLPPLREVVAKHGLMASKALGQNFLFDLNLTARIARAAGPLEGATIVEIGPGPGGLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           + LL  GA +VI +E+D +  P L++I +++P RL I++ DAL  D  +      +  P 
Sbjct: 61  RALLAEGAGRVIAVERDARCMPALREIEARYPGRLVIVEGDALAADPAQLVREHGLGGPA 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLT 178
           RI ANLPYNI T LL  WI A+ WP  ++   L+FQ+EV  RI A       YGRL+VL 
Sbjct: 121 RICANLPYNIATELLARWIEAEPWPSVFDRYVLMFQREVALRIVATPAQRADYGRLAVLC 180

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
           GWRT+A ++FD+SP  F P PKVTS+V+  +P+  P  C    L ++T+ AFG+RRK LR
Sbjct: 181 GWRTRARILFDLSPSAFTPPPKVTSSVVELVPNATPAACEPRLLSQVTKAAFGQRRKMLR 240

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           QSLK L        +LL  AGIE   RAE + I  F  +   L D
Sbjct: 241 QSLKSLPFPGLDVGSLLTAAGIEETRRAEEIDIGGFVALAQALAD 285


>gi|91977439|ref|YP_570098.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5]
 gi|123735336|sp|Q135P2|RSMA_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91683895|gb|ABE40197.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5]
          Length = 287

 Score =  305 bits (782), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 120/280 (42%), Positives = 180/280 (64%), Gaps = 3/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+  +IA ++G LD +TV+EIG GPG 
Sbjct: 1   MSAIDGLPPLRDVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+VI IE+D++    L++I++ +P RLEI+  DA+  D           +
Sbjct: 61  LTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMDFDPTPLLG-GERAK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+  + WPP+++ + L+FQ+EV +RI A+++   YGRL+VL+ W
Sbjct: 120 IVANLPYNIATPLLIGWLCTEPWPPWYDMMVLMFQREVAQRIVAREDDDAYGRLAVLSNW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  M+FDI+P  F P PKVTS+V+   P   P PC   +L+++   AFG+RRK LRQS
Sbjct: 180 RCETNMLFDIAPSAFVPQPKVTSSVVRLAPRAAPEPCNRAALEQVAAAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK LG +   L   AGI+   RAE +++  F  + N L +
Sbjct: 240 LKSLGVDPARLAAAAGIDPTRRAETVAVSGFVAMANELNN 279


>gi|148977505|ref|ZP_01814094.1| dimethyladenosine transferase [Vibrionales bacterium SWAT-3]
 gi|145963300|gb|EDK28566.1| dimethyladenosine transferase [Vibrionales bacterium SWAT-3]
          Length = 271

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 93/269 (34%), Positives = 142/269 (52%), Gaps = 7/269 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++      ++L I + DA+K DFE+    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PDLADKLTIHEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K T + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVTPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+   P+   P P   L+ L ++ +E F +RRKT+R   K L  +++L + 
Sbjct: 181 VPPPKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKDVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDI 282
           GI  ++R ENL+++ F  + N L DN + 
Sbjct: 241 GINPSMRPENLTLQQFVDMANWLHDNHNA 269


>gi|104779701|ref|YP_606199.1| dimethyladenosine transferase [Pseudomonas entomophila L48]
 gi|95108688|emb|CAK13382.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Pseudomonas entomophila L48]
          Length = 266

 Score =  304 bits (780), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 92/268 (34%), Positives = 145/268 (54%), Gaps = 7/268 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            HY+   +K  GQNFL D  I+ +I  +  +  G  ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EHYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL+   +   N   + Q DALK DF +       ++++ NLPYNI T L+
Sbjct: 62  VVELDKDLVPILQHKFAGRGN-FRLHQGDALKFDFNQLGVPERSLKVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ ++          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLAHAN---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH   P P      L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDPLLLERVVREAFNQRRKTLRNTLKGLLDSQAIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280
           AG++ +LR E L +  F R+ + L + Q
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADKLAEQQ 265


>gi|326386744|ref|ZP_08208365.1| dimethyladenosine transferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208797|gb|EGD59593.1| dimethyladenosine transferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 281

 Score =  304 bits (780), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 113/270 (41%), Positives = 156/270 (57%), Gaps = 4/270 (1%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+ +++ + +  +K +GQNFL D  +L +IA   G L G  V+E+G GPG LT+ LL 
Sbjct: 7   PPLRDVVARHGLSAQKSLGQNFLFDEQLLDRIAAVPGKLAGADVLEVGPGPGGLTRALLR 66

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GAR V  IE D++  P L ++    P +L +I+ DA+K+  E  F       I ANLPY
Sbjct: 67  AGAR-VTAIEMDRRCLPALAELGEAFPGQLRVIEGDAMKIAPETLFEGE--WHIAANLPY 123

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+GT L   W+S   WPP W SLTL+FQ EV ERI A+  S  YGRL++L+ WR    + 
Sbjct: 124 NVGTGLFTGWLSGQAWPPRWRSLTLMFQLEVAERIVAKTGSDAYGRLAILSQWRATPRIA 183

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GG 246
             +    F P PKV S ++H  P   P      +L+++T+ AFG+RRK LRQSLK L G 
Sbjct: 184 MKVHRSAFTPPPKVMSAIVHVEPAEMPDGVSARTLERVTEAAFGQRRKMLRQSLKGLPGA 243

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            + L   GI+   RAE L + DF  I  I+
Sbjct: 244 LDALETLGIDPQRRAETLDVADFVAIARIM 273


>gi|227552435|ref|ZP_03982484.1| dimethyladenosine transferase [Enterococcus faecium TX1330]
 gi|257888325|ref|ZP_05667978.1| dimethyladenosine transferase [Enterococcus faecium 1,141,733]
 gi|257896785|ref|ZP_05676438.1| dimethyladenosine transferase [Enterococcus faecium Com12]
 gi|293378583|ref|ZP_06624746.1| dimethyladenosine transferase [Enterococcus faecium PC4.1]
 gi|227178447|gb|EEI59419.1| dimethyladenosine transferase [Enterococcus faecium TX1330]
 gi|257824379|gb|EEV51311.1| dimethyladenosine transferase [Enterococcus faecium 1,141,733]
 gi|257833350|gb|EEV59771.1| dimethyladenosine transferase [Enterococcus faecium Com12]
 gi|292642912|gb|EFF61059.1| dimethyladenosine transferase [Enterococcus faecium PC4.1]
          Length = 294

 Score =  304 bits (779), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 154/289 (53%), Gaps = 20/289 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L 
Sbjct: 10  PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A++V+  E D +  P+L D    + N + II  D LK D      + F+   P++++
Sbjct: 70  MH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFHEELPLKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +D      + L ++ QKEV +RI+A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S ++       P       ++  ++T+ AF +RRKTL  +
Sbjct: 185 EASLAFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           L+   G++          L  AGI+   R E LS+++F  ++N +++N+
Sbjct: 245 LQHSYGKDDQTKTWLSKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293


>gi|170723958|ref|YP_001751646.1| dimethyladenosine transferase [Pseudomonas putida W619]
 gi|169761961|gb|ACA75277.1| dimethyladenosine transferase [Pseudomonas putida W619]
          Length = 266

 Score =  304 bits (779), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 91/268 (33%), Positives = 145/268 (54%), Gaps = 7/268 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            HY+   +K  GQNFL D  I+ +I  +  +  G  ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EHYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL+   +   N   + Q DALK DF +    +  ++++ NLPYNI T L+
Sbjct: 62  VVELDKDLVPILQHKFAGRDN-FRLHQGDALKFDFNQLGVPARSLKVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH        +   L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDHLLLERVVREAFNQRRKTLRNTLKGLLDSQAIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280
           AG++ +LR E L +  F R+ + L + Q
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLANQQ 265


>gi|83648741|ref|YP_437176.1| dimethyladenosine transferase [Hahella chejuensis KCTC 2396]
 gi|119365027|sp|Q2S9C3|RSMA_HAHCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83636784|gb|ABC32751.1| dimethyladenosine transferase [Hahella chejuensis KCTC 2396]
          Length = 273

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 90/264 (34%), Positives = 140/264 (53%), Gaps = 7/264 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ +I  S        ++EIG G G LT+ LL  G   V  +E
Sbjct: 9   GHQARKRFGQNFLHDQGVIDRIVRSINPKSDQNLVEIGPGLGALTEELLKSGG-SVTAVE 67

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+   PIL+     +P +  +I+ DALK DF +      P+R+I NLPYNI T L+F+ 
Sbjct: 68  LDRDLTPILRTKFFNYP-QFNVIEADALKFDFTQLATPERPMRLIGNLPYNISTPLIFHL 126

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +   T+    + +  + QKEV +R+ A+     YGRL V+  +  K   +F++ P  F P
Sbjct: 127 L---TFRGLVQDMYFMLQKEVVDRLAAKPGEDAYGRLGVMAQYYCKVESLFNVGPGAFQP 183

Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S ++   P+  P   C +   L  + ++AF  RRKTLR +LK+L   + L    I
Sbjct: 184 APKVWSAIVRLTPYTEPPLACKDVATLTTVVRQAFAMRRKTLRNTLKQLITVDALQSLDI 243

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
           +  +R E L + +F RI + + D+
Sbjct: 244 DPQIRPERLGLPEFVRIADYVYDH 267


>gi|254562982|ref|YP_003070077.1| dimethyladenosine transferase [Methylobacterium extorquens DM4]
 gi|254270260|emb|CAX26254.1| dimethyladenosine transferase [Methylobacterium extorquens DM4]
          Length = 296

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 128/290 (44%), Positives = 191/290 (65%), Gaps = 10/290 (3%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
            +    L+ ++  + + PKK +GQNFL DLN+  +IA S+G+L+G+TV+E+G GPG LT+
Sbjct: 8   TDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTR 67

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
            LL  GA++V+ IE+D +  P L +I++ +P RL++I  DA+  D         P+RI+A
Sbjct: 68  ALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGEG-PVRIVA 126

Query: 124 NLPYNIGTRLLFNWISADT----WPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLT 178
           NLPYN+ T LL  W+ ADT    WPP+W+S TL+FQ+EV ERI A ++   +YGRL VL 
Sbjct: 127 NLPYNVATVLLTGWLGADTRDEAWPPWWDSATLMFQREVAERIVADESDRANYGRLGVLC 186

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
           GWRT+AT++FD++P  F P PKVTS+V+H  P   P+PC +  L+++T+ AFG+RRK LR
Sbjct: 187 GWRTQATILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLR 246

Query: 239 QSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT--DNQDIAI 284
           QSLK    +   LL  AG+    RAE + +  F  +   L   ++++ A+
Sbjct: 247 QSLKAATPDPIRLLTAAGLPETARAEEIPVAGFVAMARALEAGESRESAL 296


>gi|323135841|ref|ZP_08070924.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242]
 gi|322398932|gb|EFY01451.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242]
          Length = 300

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 178/301 (59%), Gaps = 25/301 (8%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGS----------------- 45
           M++    L+ +++ + +  KK +GQNFL DLN+  +IA ++G                  
Sbjct: 1   MSDALPPLRDVVARHGLDAKKTLGQNFLFDLNLTARIARAAGPFTHAAEKSSDFSDKSMH 60

Query: 46  -LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                TV+EIG GPG LT+ LL  GAR VI +E+D +  P L +I++ +P RL +++ DA
Sbjct: 61  DETATTVVEIGPGPGGLTRALLAQGAR-VIAVERDARCLPALAEIAAHYPGRLTVVEGDA 119

Query: 105 LKVDFEKF---FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
           L++D  +         P RI ANLPYN+ T LL  WI A+ WP  ++   L+FQKEV  R
Sbjct: 120 LEIDAAELVRAHGAGGPARICANLPYNVATALLTRWIEAEPWPSVFDRYVLMFQKEVALR 179

Query: 162 ITAQKNSP-HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220
           I A       YGRL+VL GWRTKA ++FD+SP  F P PKVTS+V+  +P+ +P+ C   
Sbjct: 180 IVATPAQRADYGRLAVLCGWRTKARILFDVSPAAFTPPPKVTSSVVELVPNPSPLACDPR 239

Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +L ++TQ AFG+RRK LRQSL+ LG +   LL  AGIE   RAE + +  F  + N L  
Sbjct: 240 ALFRVTQAAFGQRRKMLRQSLRTLGVDASALLAAAGIEETKRAEEIDVPGFVALANALAS 299

Query: 279 N 279
           +
Sbjct: 300 H 300


>gi|269960921|ref|ZP_06175291.1| dimethyladenosine transferase [Vibrio harveyi 1DA3]
 gi|269834361|gb|EEZ88450.1| dimethyladenosine transferase [Vibrio harveyi 1DA3]
          Length = 269

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 87/266 (32%), Positives = 137/266 (51%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L  L+++ +E F +RRKT+R   K L    +L + 
Sbjct: 181 VPPPKVDSAVVRLVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKSLLSTEVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           GI  ++R ENL+++ F  + N L DN
Sbjct: 241 GINPSMRPENLTLQQFVAMANWLADN 266


>gi|91227108|ref|ZP_01261592.1| dimethyladenosine transferase [Vibrio alginolyticus 12G01]
 gi|254229739|ref|ZP_04923147.1| dimethyladenosine transferase [Vibrio sp. Ex25]
 gi|262392439|ref|YP_003284293.1| dimethyladenosine transferase [Vibrio sp. Ex25]
 gi|269964664|ref|ZP_06178902.1| dimethyladenosine transferase [Vibrio alginolyticus 40B]
 gi|91188760|gb|EAS75047.1| dimethyladenosine transferase [Vibrio alginolyticus 12G01]
 gi|151937706|gb|EDN56556.1| dimethyladenosine transferase [Vibrio sp. Ex25]
 gi|262336033|gb|ACY49828.1| dimethyladenosine transferase [Vibrio sp. Ex25]
 gi|269830563|gb|EEZ84784.1| dimethyladenosine transferase [Vibrio alginolyticus 40B]
          Length = 269

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 87/266 (32%), Positives = 135/266 (50%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L+    +  ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLR-THPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L  L ++ +E F +RRKT+R   K L    +L + 
Sbjct: 181 VPPPKVDSAVVRLVPYEELPCPAKDLRLLDRVCREGFNQRRKTVRNCYKSLLSTEVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G+  ++R ENL++E F  + N L DN
Sbjct: 241 GVNPSMRPENLTLEQFVAMANWLADN 266


>gi|293573156|ref|ZP_06684093.1| dimethyladenosine transferase [Enterococcus faecium E980]
 gi|291606794|gb|EFF36179.1| dimethyladenosine transferase [Enterococcus faecium E980]
          Length = 294

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 154/289 (53%), Gaps = 20/289 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L 
Sbjct: 10  PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A++V+  E D +  P+L D    + N + II  D LK D      + F+   P++++
Sbjct: 70  MH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFHEELPLKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +D      + L ++ QKEV +RI+A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S ++       P       ++  ++T+ AF +RRKTL  +
Sbjct: 185 EASLAFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           L+   G++          L  AGI+   R E LS+++F  ++N +++N+
Sbjct: 245 LQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293


>gi|317046866|ref|YP_004114514.1| dimethyladenosine transferase [Pantoea sp. At-9b]
 gi|316948483|gb|ADU67958.1| dimethyladenosine transferase [Pantoea sp. At-9b]
          Length = 274

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 140/281 (49%), Gaps = 16/281 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  I+  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHYARKRFGQNFLNDQYIIDSIVSAIHPQKGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           + +      ++ V+E D+     L+        +L I Q DA+  DF         P+R+
Sbjct: 53  EPVGERL-DELTVVELDRDLAARLQ-THPFLGPKLTIFQQDAMTFDFSALAREKGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   S  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +P+  P      +  L +IT EAFG+RRKTLR 
Sbjct: 168 CQVIPVLEVPPQSFTPPPKVDSAVVRLVPYAQPQHPVSDVRLLSRITTEAFGQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           SL  L     L    I+ +LRAEN+S+  +C++ N L ++Q
Sbjct: 228 SLGHLFAAGALDALNIDASLRAENVSVAQYCQLANWLGNHQ 268


>gi|167031448|ref|YP_001666679.1| dimethyladenosine transferase [Pseudomonas putida GB-1]
 gi|166857936|gb|ABY96343.1| dimethyladenosine transferase [Pseudomonas putida GB-1]
          Length = 266

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/268 (33%), Positives = 143/268 (53%), Gaps = 7/268 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  +  +  G  ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL+   +   N   + Q DALK DF +       ++++ NLPYNI T L+
Sbjct: 62  VVELDKDLVPILQHKFADRGN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH          + L+++ +EAF +RRKTLR ++K L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDAKLLEQVVREAFNQRRKTLRNTMKGLLDSAAIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280
           AG++ +LR E L +  F R+ + L D Q
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLADQQ 265


>gi|257899761|ref|ZP_05679414.1| dimethyladenosine transferase [Enterococcus faecium Com15]
 gi|257837673|gb|EEV62747.1| dimethyladenosine transferase [Enterococcus faecium Com15]
          Length = 294

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 153/289 (52%), Gaps = 20/289 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L 
Sbjct: 10  PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A++V+  E D +  P+L D    + N + II  D LK D      + F    P++++
Sbjct: 70  MH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIIHQDILKTDLSTAVRETFQEELPLKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +D      + L ++ QKEV +RI+A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S ++       P       ++  ++T+ AF +RRKTL  +
Sbjct: 185 EASLAFIVPKTVFVPQPNVDSAILKLTRRDTPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           L+   G++          L  AGI+   R E LS+++F  ++N +++N+
Sbjct: 245 LQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSENK 293


>gi|240140378|ref|YP_002964857.1| dimethyladenosine transferase [Methylobacterium extorquens AM1]
 gi|240010354|gb|ACS41580.1| dimethyladenosine transferase [Methylobacterium extorquens AM1]
          Length = 296

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 128/281 (45%), Positives = 186/281 (66%), Gaps = 8/281 (2%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
            +    L+ ++  + + PKK +GQNFL DLN+  +IA S+G+L+G+TV+E+G GPG LT+
Sbjct: 8   TDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTR 67

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
            LL  GA++V+ IE+D +  P L +I++ +P RL++I  DA+  D         P+RI+A
Sbjct: 68  ALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGDG-PVRIVA 126

Query: 124 NLPYNIGTRLLFNWISADT----WPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLT 178
           NLPYN+ T LL  W+ ADT    WPP+WES TL+FQ+EV ERI A ++   +YGRL VL 
Sbjct: 127 NLPYNVATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLC 186

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
           GWRT+AT++FD++P  F P PKVTS+V+H  P   P+PC +  L+++T+ AFG+RRK LR
Sbjct: 187 GWRTQATILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLR 246

Query: 239 QSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           QSLK    +   LL  AG+    RAE + +  F  +  +L 
Sbjct: 247 QSLKAATPDPIRLLTAAGLPETARAEEIPVAGFVAMARVLE 287


>gi|229548872|ref|ZP_04437597.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200]
 gi|255971386|ref|ZP_05421972.1| dimethyladenosine transferase [Enterococcus faecalis T1]
 gi|257421180|ref|ZP_05598170.1| dimethyladenosine transferase dimethyltransferase [Enterococcus
           faecalis X98]
 gi|312952797|ref|ZP_07771659.1| dimethyladenosine transferase [Enterococcus faecalis TX0102]
 gi|229305893|gb|EEN71889.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200]
 gi|255962404|gb|EET94880.1| dimethyladenosine transferase [Enterococcus faecalis T1]
 gi|257163004|gb|EEU92964.1| dimethyladenosine transferase dimethyltransferase [Enterococcus
           faecalis X98]
 gi|310629313|gb|EFQ12596.1| dimethyladenosine transferase [Enterococcus faecalis TX0102]
 gi|315153008|gb|EFT97024.1| dimethyladenosine transferase [Enterococcus faecalis TX0031]
 gi|315155239|gb|EFT99255.1| dimethyladenosine transferase [Enterococcus faecalis TX0043]
 gi|315157566|gb|EFU01583.1| dimethyladenosine transferase [Enterococcus faecalis TX0312]
          Length = 295

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 149/291 (51%), Gaps = 20/291 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  Y    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+ L 
Sbjct: 10  PSRTKEILKKYGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++
Sbjct: 70  MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +         + ++ QKEV +RI A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S +I       P       +   K+T+ +F  RRKTL  +
Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           L    G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|329850882|ref|ZP_08265727.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19]
 gi|328841197|gb|EGF90768.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19]
          Length = 275

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/274 (42%), Positives = 164/274 (59%), Gaps = 7/274 (2%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            +L+  L  + ++ KK  GQ+FLLDLNI +KI    G  DG TVIE+G GPG LT+ LL 
Sbjct: 5   PTLRESLEQHGLMAKKAFGQHFLLDLNITRKIVRLGGPFDGDTVIEVGPGPGGLTRALLE 64

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRIIAN 124
             A  VI +EKD +F  +L +++    +R E+I+ DALKVD  +      +S    I++N
Sbjct: 65  SEAAHVIAVEKDSRFLELLGELNEVFGDRFEVIEGDALKVDEAQLLADRKLSPQAHIVSN 124

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+GT LL  W++    P   +SLTL+FQ EV  R+ A      YGRLSV++     A
Sbjct: 125 LPYNVGTPLLIKWLTGPWRP---KSLTLMFQLEVALRVVAPVGDDDYGRLSVISQILCDA 181

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           + + D+    F P P+V S V+  IP    P P  +++L+K+T  AFG+RRK LR SLK 
Sbjct: 182 SKIMDLPARAFTPPPRVDSAVVRLIPKADRPAPAVIKNLEKVTAAAFGQRRKMLRSSLKS 241

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LGGE LL +A I+  LRAE +  + F R+   L+
Sbjct: 242 LGGEVLLDKAAIDATLRAEQVGPDGFLRLATALS 275


>gi|26987143|ref|NP_742568.1| dimethyladenosine transferase [Pseudomonas putida KT2440]
 gi|33516928|sp|Q88QT6|RSMA_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|24981775|gb|AAN66032.1|AE016232_5 dimethyladenosine transferase [Pseudomonas putida KT2440]
 gi|313496767|gb|ADR58133.1| KsgA [Pseudomonas putida BIRD-1]
          Length = 267

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 92/268 (34%), Positives = 144/268 (53%), Gaps = 7/268 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  I+ +I  +  +  G  ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL+   +   N   + Q DALK DF +       ++++ NLPYNI T L+
Sbjct: 62  VVELDKDLVPILQHKFADRSN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH   P P      L+++ +EAF +RRKTLR ++K L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280
           AG++ +LR E L +  F R+ + L D Q
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLADQQ 265


>gi|229546781|ref|ZP_04435506.1| dimethyladenosine transferase [Enterococcus faecalis TX1322]
 gi|256854221|ref|ZP_05559585.1| dimethyladenosine transferase [Enterococcus faecalis T8]
 gi|307290952|ref|ZP_07570842.1| dimethyladenosine transferase [Enterococcus faecalis TX0411]
 gi|229308130|gb|EEN74117.1| dimethyladenosine transferase [Enterococcus faecalis TX1322]
 gi|256709781|gb|EEU24825.1| dimethyladenosine transferase [Enterococcus faecalis T8]
 gi|306498022|gb|EFM67549.1| dimethyladenosine transferase [Enterococcus faecalis TX0411]
 gi|315029806|gb|EFT41738.1| dimethyladenosine transferase [Enterococcus faecalis TX4000]
          Length = 295

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 150/291 (51%), Gaps = 20/291 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+ L 
Sbjct: 10  PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++
Sbjct: 70  MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +         + ++ QKEV +RI A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S +I    H  P       +   K+T+ +F  RRKTL  +
Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRHATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           L    G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 245 LTHFYGKDEQTVAWLKVSLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|37524611|ref|NP_927955.1| dimethyladenosine transferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|62900562|sp|Q7N8V7|RSMA_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|36784035|emb|CAE12904.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 272

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 97/283 (34%), Positives = 151/283 (53%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  IA +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLTDQFVIDSIAAAINPQPGQAVLEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +      K+ V+E D+     L+ +  Q  ++L IIQ DA+ V+F +       P+R+
Sbjct: 53  EPVGER-MDKMTVVELDRDLAARLQ-VHPQLKDKLTIIQQDAMTVNFGELSQQRGKPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A   S  +GRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPGSKTFGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH + P P   +  L +IT +AF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPTAFTPAPKVDSAVVRLVPHKSIPHPVKNIRMLSRITTQAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L     L + GI+ + RAEN+S+E +C++ N L++  ++
Sbjct: 228 SLGDLFTVEQLTELGIDPSTRAENISVEQYCKMANWLSEQPEM 270


>gi|257081179|ref|ZP_05575540.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol]
 gi|256989209|gb|EEU76511.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol]
 gi|323480116|gb|ADX79555.1| dimethyladenosine transferase [Enterococcus faecalis 62]
          Length = 295

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 149/291 (51%), Gaps = 20/291 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+ L 
Sbjct: 10  PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++
Sbjct: 70  MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +         + ++ QKEV +RI A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S +I       P       +   K+T+ +F  RRKTL  +
Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAMTVTNEKEFFKLTKASFQLRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           L    G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|149191630|ref|ZP_01869874.1| dimethyladenosine transferase [Vibrio shilonii AK1]
 gi|148834530|gb|EDL51523.1| dimethyladenosine transferase [Vibrio shilonii AK1]
          Length = 268

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 83/268 (30%), Positives = 137/268 (51%), Gaps = 7/268 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  ++  I  +     G  ++EIG G G +T+ +      K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYVIDGIVSAINPRPGQNLVEIGPGLGAITEPVGKE-VDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++      ++L I + DA++ DF +  N ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PDLGDKLTIHEGDAMRFDFTQLVNPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L+ L ++ ++ F +RRKT+R   K L     L + 
Sbjct: 181 VPPPKVDSAVVRLVPYEELPYPATSLKWLDRVCRDGFNQRRKTVRNCYKSLMSAETLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQD 281
           G+  ++R ENL+++ F  + N L +N +
Sbjct: 241 GVNPSMRPENLTLQQFVAMANWLDENHN 268


>gi|29375520|ref|NP_814674.1| dimethyladenosine transferase [Enterococcus faecalis V583]
 gi|227517856|ref|ZP_03947905.1| dimethyladenosine transferase [Enterococcus faecalis TX0104]
 gi|227555047|ref|ZP_03985094.1| dimethyladenosine transferase [Enterococcus faecalis HH22]
 gi|255974004|ref|ZP_05424590.1| dimethyladenosine transferase [Enterococcus faecalis T2]
 gi|256617805|ref|ZP_05474651.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200]
 gi|256761690|ref|ZP_05502270.1| dimethyladenosine transferase [Enterococcus faecalis T3]
 gi|256957208|ref|ZP_05561379.1| dimethyladenosine transferase [Enterococcus faecalis DS5]
 gi|257077820|ref|ZP_05572181.1| dimethyladenosine transferase [Enterococcus faecalis JH1]
 gi|257083847|ref|ZP_05578208.1| dimethyladenosine transferase [Enterococcus faecalis Fly1]
 gi|257086272|ref|ZP_05580633.1| dimethyladenosine transferase [Enterococcus faecalis D6]
 gi|257089346|ref|ZP_05583707.1| dimethyladenosine transferase [Enterococcus faecalis CH188]
 gi|257415498|ref|ZP_05592492.1| dimethyladenosine transferase [Enterococcus faecalis AR01/DG]
 gi|257418530|ref|ZP_05595524.1| dimethyladenosine transferase [Enterococcus faecalis T11]
 gi|293383814|ref|ZP_06629721.1| dimethyladenosine transferase [Enterococcus faecalis R712]
 gi|293388710|ref|ZP_06633203.1| dimethyladenosine transferase [Enterococcus faecalis S613]
 gi|294780523|ref|ZP_06745886.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1]
 gi|300859868|ref|ZP_07105956.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11]
 gi|307268011|ref|ZP_07549399.1| dimethyladenosine transferase [Enterococcus faecalis TX4248]
 gi|307275353|ref|ZP_07556496.1| dimethyladenosine transferase [Enterococcus faecalis TX2134]
 gi|307278369|ref|ZP_07559444.1| dimethyladenosine transferase [Enterococcus faecalis TX0860]
 gi|307286744|ref|ZP_07566830.1| dimethyladenosine transferase [Enterococcus faecalis TX0109]
 gi|312901521|ref|ZP_07760795.1| dimethyladenosine transferase [Enterococcus faecalis TX0470]
 gi|312904496|ref|ZP_07763655.1| dimethyladenosine transferase [Enterococcus faecalis TX0635]
 gi|312906970|ref|ZP_07765966.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512]
 gi|312978773|ref|ZP_07790500.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516]
 gi|33516925|sp|Q837A7|RSMA_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|29342980|gb|AAO80744.1| dimethyladenosine transferase [Enterococcus faecalis V583]
 gi|227074699|gb|EEI12662.1| dimethyladenosine transferase [Enterococcus faecalis TX0104]
 gi|227175834|gb|EEI56806.1| dimethyladenosine transferase [Enterococcus faecalis HH22]
 gi|255966876|gb|EET97498.1| dimethyladenosine transferase [Enterococcus faecalis T2]
 gi|256597332|gb|EEU16508.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200]
 gi|256682941|gb|EEU22636.1| dimethyladenosine transferase [Enterococcus faecalis T3]
 gi|256947704|gb|EEU64336.1| dimethyladenosine transferase [Enterococcus faecalis DS5]
 gi|256985850|gb|EEU73152.1| dimethyladenosine transferase [Enterococcus faecalis JH1]
 gi|256991877|gb|EEU79179.1| dimethyladenosine transferase [Enterococcus faecalis Fly1]
 gi|256994302|gb|EEU81604.1| dimethyladenosine transferase [Enterococcus faecalis D6]
 gi|256998158|gb|EEU84678.1| dimethyladenosine transferase [Enterococcus faecalis CH188]
 gi|257157326|gb|EEU87286.1| dimethyladenosine transferase [Enterococcus faecalis ARO1/DG]
 gi|257160358|gb|EEU90318.1| dimethyladenosine transferase [Enterococcus faecalis T11]
 gi|291078890|gb|EFE16254.1| dimethyladenosine transferase [Enterococcus faecalis R712]
 gi|291081867|gb|EFE18830.1| dimethyladenosine transferase [Enterococcus faecalis S613]
 gi|294452350|gb|EFG20789.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1]
 gi|300850686|gb|EFK78435.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11]
 gi|306502222|gb|EFM71506.1| dimethyladenosine transferase [Enterococcus faecalis TX0109]
 gi|306504875|gb|EFM74070.1| dimethyladenosine transferase [Enterococcus faecalis TX0860]
 gi|306507987|gb|EFM77114.1| dimethyladenosine transferase [Enterococcus faecalis TX2134]
 gi|306515652|gb|EFM84179.1| dimethyladenosine transferase [Enterococcus faecalis TX4248]
 gi|310626955|gb|EFQ10238.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512]
 gi|310632194|gb|EFQ15477.1| dimethyladenosine transferase [Enterococcus faecalis TX0635]
 gi|311288480|gb|EFQ67036.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516]
 gi|311291421|gb|EFQ69977.1| dimethyladenosine transferase [Enterococcus faecalis TX0470]
 gi|315027121|gb|EFT39053.1| dimethyladenosine transferase [Enterococcus faecalis TX2137]
 gi|315032435|gb|EFT44367.1| dimethyladenosine transferase [Enterococcus faecalis TX0017]
 gi|315034331|gb|EFT46263.1| dimethyladenosine transferase [Enterococcus faecalis TX0027]
 gi|315145777|gb|EFT89793.1| dimethyladenosine transferase [Enterococcus faecalis TX2141]
 gi|315148093|gb|EFT92109.1| dimethyladenosine transferase [Enterococcus faecalis TX4244]
 gi|315149696|gb|EFT93712.1| dimethyladenosine transferase [Enterococcus faecalis TX0012]
 gi|315165204|gb|EFU09221.1| dimethyladenosine transferase [Enterococcus faecalis TX1302]
 gi|315167928|gb|EFU11945.1| dimethyladenosine transferase [Enterococcus faecalis TX1341]
 gi|315172038|gb|EFU16055.1| dimethyladenosine transferase [Enterococcus faecalis TX1342]
 gi|315173444|gb|EFU17461.1| dimethyladenosine transferase [Enterococcus faecalis TX1346]
 gi|315574151|gb|EFU86342.1| dimethyladenosine transferase [Enterococcus faecalis TX0309B]
 gi|315577282|gb|EFU89473.1| dimethyladenosine transferase [Enterococcus faecalis TX0630]
 gi|315581706|gb|EFU93897.1| dimethyladenosine transferase [Enterococcus faecalis TX0309A]
 gi|327534516|gb|AEA93350.1| dimethyladenosine transferase [Enterococcus faecalis OG1RF]
          Length = 295

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 149/291 (51%), Gaps = 20/291 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+ L 
Sbjct: 10  PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++
Sbjct: 70  MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +         + ++ QKEV +RI A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S +I       P       +   K+T+ +F  RRKTL  +
Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           L    G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|92117868|ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
 gi|119365039|sp|Q1QKW0|RSMA_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91800762|gb|ABE63137.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
          Length = 287

 Score =  302 bits (774), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 121/280 (43%), Positives = 178/280 (63%), Gaps = 3/280 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ ++  + +  +K +GQNFLLDLN+  +IA ++G L+  TVIEIG GPG 
Sbjct: 1   MSTIDDLPPLRDVIKRHALSARKSLGQNFLLDLNLTARIARAAGPLEDATVIEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL +GA++VI IE+D +    L++IS ++P RL I+  DA + D       +   +
Sbjct: 61  LTRALLAMGAQRVIAIERDARALGALEEISGRYPGRLTIVNADATQFDSRPLLGTTR-AK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL +W+S + WPP+++++ L+FQ+EV ERI A++N   YGRL+VL+ W
Sbjct: 120 IVANLPYNIATALLIDWLSVEPWPPWYDTMVLMFQREVAERIVARENEEAYGRLAVLSNW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  ++FDISP  F P PK+TS+V+  +P   P  C    L+++   AFG+RRK LRQS
Sbjct: 180 RAETKILFDISPAAFVPQPKITSSVVRLVPRDKPETCERRLLEQVAAAAFGQRRKMLRQS 239

Query: 241 LKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK L  +   L   AGIE   RAE + I  F  +   L D
Sbjct: 240 LKSLPADPARLTAAAGIEPTQRAETVPISGFAAMARELAD 279


>gi|153834241|ref|ZP_01986908.1| dimethyladenosine transferase [Vibrio harveyi HY01]
 gi|148869429|gb|EDL68435.1| dimethyladenosine transferase [Vibrio harveyi HY01]
          Length = 269

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 136/266 (51%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P      L+++ +E F +RRKT+R   K L    +L + 
Sbjct: 181 VPPPKVDSAVVRLVPYEELPHPAKDFRLLERVCREGFNQRRKTVRNCYKALISAEVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G+  ++R ENL+++ F  + N L DN
Sbjct: 241 GVNPSMRPENLTLQQFVAMANWLADN 266


>gi|148545687|ref|YP_001265789.1| dimethyladenosine transferase [Pseudomonas putida F1]
 gi|148509745|gb|ABQ76605.1| dimethyladenosine transferase [Pseudomonas putida F1]
          Length = 267

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 92/268 (34%), Positives = 143/268 (53%), Gaps = 7/268 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  I+ +I  +  +  G  ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +   N   + Q DALK DF +       ++++ NLPYNI T L+
Sbjct: 62  VVELDKDLVPILHHKFADRSN-FRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH   P P      L+++ +EAF +RRKTLR ++K L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280
           AG++ +LR E L +  F R+ + L D Q
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLADQQ 265


>gi|257880094|ref|ZP_05659747.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933]
 gi|257882326|ref|ZP_05661979.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502]
 gi|257885523|ref|ZP_05665176.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501]
 gi|257891185|ref|ZP_05670838.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410]
 gi|258614573|ref|ZP_05712343.1| dimethyladenosine transferase [Enterococcus faecium DO]
 gi|260560297|ref|ZP_05832473.1| dimethyladenosine transferase [Enterococcus faecium C68]
 gi|293563099|ref|ZP_06677565.1| dimethyladenosine transferase [Enterococcus faecium E1162]
 gi|293567525|ref|ZP_06678870.1| dimethyladenosine transferase [Enterococcus faecium E1071]
 gi|294623379|ref|ZP_06702238.1| dimethyladenosine transferase [Enterococcus faecium U0317]
 gi|314940231|ref|ZP_07847404.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04]
 gi|314941710|ref|ZP_07848589.1| dimethyladenosine transferase [Enterococcus faecium TX0133C]
 gi|314947646|ref|ZP_07851055.1| dimethyladenosine transferase [Enterococcus faecium TX0082]
 gi|314950632|ref|ZP_07853712.1| dimethyladenosine transferase [Enterococcus faecium TX0133A]
 gi|314992501|ref|ZP_07857922.1| dimethyladenosine transferase [Enterococcus faecium TX0133B]
 gi|314996345|ref|ZP_07861398.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01]
 gi|257814322|gb|EEV43080.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933]
 gi|257817984|gb|EEV45312.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502]
 gi|257821379|gb|EEV48509.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501]
 gi|257827545|gb|EEV54171.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410]
 gi|260073642|gb|EEW61968.1| dimethyladenosine transferase [Enterococcus faecium C68]
 gi|291589768|gb|EFF21571.1| dimethyladenosine transferase [Enterococcus faecium E1071]
 gi|291597226|gb|EFF28418.1| dimethyladenosine transferase [Enterococcus faecium U0317]
 gi|291605013|gb|EFF34481.1| dimethyladenosine transferase [Enterococcus faecium E1162]
 gi|313589488|gb|EFR68333.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01]
 gi|313592961|gb|EFR71806.1| dimethyladenosine transferase [Enterococcus faecium TX0133B]
 gi|313597179|gb|EFR76024.1| dimethyladenosine transferase [Enterococcus faecium TX0133A]
 gi|313599482|gb|EFR78325.1| dimethyladenosine transferase [Enterococcus faecium TX0133C]
 gi|313640551|gb|EFS05131.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04]
 gi|313645887|gb|EFS10467.1| dimethyladenosine transferase [Enterococcus faecium TX0082]
          Length = 294

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 153/288 (53%), Gaps = 20/288 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L 
Sbjct: 10  PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A++V+  E D +  P+L D    + N + I+  D LK D      + F+   P++++
Sbjct: 70  KH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +D      + L ++ QKEV +RI+A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S ++       P       ++  ++T+ AF +RRKTL  +
Sbjct: 185 EASLAFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+   G++          L  AGI+   R E LS+++F  ++N +++N
Sbjct: 245 LQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSEN 292


>gi|83312817|ref|YP_423081.1| dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
 gi|119365030|sp|Q2W0V3|RSMA_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|82947658|dbj|BAE52522.1| Dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
          Length = 281

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 121/271 (44%), Positives = 169/271 (62%), Gaps = 7/271 (2%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+ +++ + +  +K +GQ+FL DLN+  +IA ++G L   +VIEIG GPG LT+ LL 
Sbjct: 5   PPLREVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLTVGSVIEIGPGPGGLTRALLD 64

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GAR+VI IE+D +   I  +I+  +P RLEI+  DA+ VD  +   +  P RI+ANLPY
Sbjct: 65  AGARQVIAIERDDRAIAIQNEIAEAYPGRLEIMAADAMTVDAAELGEV--PRRIVANLPY 122

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI T LL  W+        +E L L+FQKEV +R+ A   S HYGRLSV+T WR +   +
Sbjct: 123 NISTALLLGWLRRADA---FERLVLMFQKEVVDRLAAPPRSEHYGRLSVITQWRCEVRPL 179

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           F++    F P P VTSTV+  IP   P+ P   E+L+++T  AFG+RRK LR SLK LGG
Sbjct: 180 FNVDRRAFTPPPAVTSTVVDLIPRAEPLAPARFETLERVTAAAFGQRRKMLRSSLKSLGG 239

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            E+LL + GI    RAE + +E FC +   L
Sbjct: 240 AEDLLERTGILPTARAEEIPVEGFCALARAL 270


>gi|23015617|ref|ZP_00055388.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 276

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 122/275 (44%), Positives = 167/275 (60%), Gaps = 7/275 (2%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+ +++ + +  +K +GQ+FL DLN+  +IA ++G L   TVIEIG GPG LT+ LL 
Sbjct: 5   PPLRDVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLSVGTVIEIGPGPGGLTRALLD 64

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GAR VI IE+D +   I  +I+  +P RLEII  DA+ +D      +  P RI+ANLPY
Sbjct: 65  AGARHVIAIERDDRAIAIQNEIAEAYPGRLEIIAADAMTIDAAGLGEM--PRRIVANLPY 122

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI T LL  W+        +E L L+FQKEV +R+ A   S HYGRLSV+T W  +   +
Sbjct: 123 NISTALLLGWLRRAQA---FERLILMFQKEVVDRLAAAPRSDHYGRLSVITQWLCEVRPL 179

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           F++    F P P VTSTV+  IP   P+ P   E+L+++T  AFG+RRK LR SLK LGG
Sbjct: 180 FNVDRRAFTPPPAVTSTVVDLIPRSQPLAPARFETLERVTAAAFGQRRKMLRSSLKPLGG 239

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            E LL + GI    RAE + +E FC +   L + Q
Sbjct: 240 AEELLERTGILPTARAEEIPVEGFCALARALDERQ 274


>gi|163797528|ref|ZP_02191479.1| 16S rRNA dimethylase [alpha proteobacterium BAL199]
 gi|159177277|gb|EDP61836.1| 16S rRNA dimethylase [alpha proteobacterium BAL199]
          Length = 283

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 121/275 (44%), Positives = 169/275 (61%), Gaps = 6/275 (2%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+  ++      KK +GQNFLLD+N+ ++IA ++G+L+  T IEIG GPG LT+ LL 
Sbjct: 13  PPLREAIATANFSAKKSLGQNFLLDINLTRRIARAAGALETGTTIEIGPGPGGLTRALLI 72

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GA  +I IE+D +    L  +      RL +++DDA +VD       ++P R++ANLPY
Sbjct: 73  EGAVDLIAIERDSRAAEALAPLVQAAEGRLRLVEDDATEVDVSSL--GAAPRRVVANLPY 130

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+ TRLL  W++    P  +ESLTL+FQKEV +R+ A   S  YGRLSV   W      +
Sbjct: 131 NVATRLLLGWLAT---PTSFESLTLMFQKEVADRLLAAPGSDAYGRLSVFVQWLCTVRRV 187

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            D+ P  F P PKV S+V+   P   P+ P    +L+++T+ AFG+RRK LRQSLK LGG
Sbjct: 188 TDLPPSAFTPPPKVWSSVVRLEPRAEPLHPADRRTLERVTEAAFGQRRKMLRQSLKGLGG 247

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           + LL  AGIE   R E LSI +FCR+ N L+D + 
Sbjct: 248 DALLIAAGIEPTERPERLSIAEFCRLANALSDRES 282


>gi|86148123|ref|ZP_01066423.1| dimethyladenosine transferase [Vibrio sp. MED222]
 gi|218708408|ref|YP_002416029.1| dimethyladenosine transferase [Vibrio splendidus LGP32]
 gi|254808268|sp|B7VIE2|RSMA_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|85834110|gb|EAQ52268.1| dimethyladenosine transferase [Vibrio sp. MED222]
 gi|218321427|emb|CAV17379.1| Dimethyladenosine transferase [Vibrio splendidus LGP32]
          Length = 271

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 91/269 (33%), Positives = 139/269 (51%), Gaps = 7/269 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++       +L I + DA+K DFE+    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PDLAEKLTIYEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K T + ++ P  F
Sbjct: 124 HLFEFHK---DVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVTPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+   P+   P P   L+ L ++ +E F +RRKT+R   K L  + +L + 
Sbjct: 181 VPPPKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKEVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDI 282
           G+   +R ENL++E F  + N L D+ + 
Sbjct: 241 GVNPGMRPENLTLEQFVDMANWLHDSHNA 269


>gi|330448803|ref|ZP_08312450.1| dimethyladenosine transferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492994|dbj|GAA06947.1| dimethyladenosine transferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 274

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 89/266 (33%), Positives = 135/266 (50%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +   L G  ++EIG G G +T+ +  L   K  V
Sbjct: 7   HLGHRARKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTV 65

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++      ++L I Q DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 66  IELDRDLAERLENH-PDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  +   + ++ P  F
Sbjct: 125 HIFEFHK---DVQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESF 181

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S V+   P+   P PC  L+ L ++ +E F +RRKT+R   K L     L   
Sbjct: 182 VPAPKVDSAVVRLTPYETLPYPCTSLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEAL 241

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           GI  + R EN+++E F  + N L  N
Sbjct: 242 GINPSHRPENITVEQFVAMANWLDAN 267


>gi|242238054|ref|YP_002986235.1| dimethyladenosine transferase [Dickeya dadantii Ech703]
 gi|242130111|gb|ACS84413.1| dimethyladenosine transferase [Dickeya dadantii Ech703]
          Length = 272

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 99/280 (35%), Positives = 143/280 (51%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIYPQSGQALVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
             +      +  V+E D+     L +      ++L IIQ DA+ VDF         P+R+
Sbjct: 53  VPVGER-IDRFTVVELDRDLAARL-ETHPTLKDKLTIIQQDAMTVDFTALAQQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTHSIRDMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH   P P      L +IT EAF +RRKTLR 
Sbjct: 168 CQVIPVLEVPPSAFKPAPKVDSAVVRLVPHTTSPYPTVDTRMLGRITTEAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L     L + GI+ N RAEN+++E +C++ N LT++
Sbjct: 228 SLGNLFTPEQLTEQGIDPNARAENVTVEQYCQLANWLTEH 267


>gi|28897110|ref|NP_796715.1| dimethyladenosine transferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838977|ref|ZP_01991644.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ3810]
 gi|260361684|ref|ZP_05774711.1| dimethyladenosine transferase [Vibrio parahaemolyticus K5030]
 gi|260878023|ref|ZP_05890378.1| dimethyladenosine transferase [Vibrio parahaemolyticus AN-5034]
 gi|260896918|ref|ZP_05905414.1| dimethyladenosine transferase [Vibrio parahaemolyticus Peru-466]
 gi|260903390|ref|ZP_05911785.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ4037]
 gi|31340184|sp|Q87ST6|RSMA_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|28805319|dbj|BAC58599.1| dimethyladenosine transferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747565|gb|EDM58497.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ3810]
 gi|308088709|gb|EFO38404.1| dimethyladenosine transferase [Vibrio parahaemolyticus Peru-466]
 gi|308090066|gb|EFO39761.1| dimethyladenosine transferase [Vibrio parahaemolyticus AN-5034]
 gi|308109049|gb|EFO46589.1| dimethyladenosine transferase [Vibrio parahaemolyticus AQ4037]
 gi|308115492|gb|EFO53032.1| dimethyladenosine transferase [Vibrio parahaemolyticus K5030]
 gi|328471908|gb|EGF42785.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio parahaemolyticus 10329]
          Length = 269

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 135/266 (50%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++      ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PDLADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L  L ++ +E F +RRKT+R   K L    +L + 
Sbjct: 181 VPPPKVDSAVVRLVPYEELPCPAKDLRLLDRVCREGFNQRRKTVRNCYKSLLSAEVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G+  ++R ENL+++ F  + N L DN
Sbjct: 241 GVNPSMRPENLTLQQFVAMANWLADN 266


>gi|304396533|ref|ZP_07378414.1| dimethyladenosine transferase [Pantoea sp. aB]
 gi|304356042|gb|EFM20408.1| dimethyladenosine transferase [Pantoea sp. aB]
          Length = 273

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 140/281 (49%), Gaps = 16/281 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  I+  I  +        ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHYARKRFGQNFLNDQYIIDSIVSAIHPQRDEALVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +      K+ VIE D+     L +       +L I Q DA+  DF         P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARL-ETHPFLGPKLTIFQQDAMTFDFAALAQERGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   +  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGNKTYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ PH F P PKV S V+  +P+  P      +  L +IT EAFG+RRKTLR 
Sbjct: 168 CQIIPVLEVPPHSFTPPPKVDSAVVRLVPYAEPPYPVSDVRILSRITTEAFGQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           SL  +     L +  I+  LRAEN+S+  +C++ N L ++Q
Sbjct: 228 SLSHMVAAGALEELSIDPTLRAENVSVAQYCQLANWLANHQ 268


>gi|88797588|ref|ZP_01113177.1| dimethyladenosine transferase [Reinekea sp. MED297]
 gi|88779760|gb|EAR10946.1| dimethyladenosine transferase [Reinekea sp. MED297]
          Length = 262

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 135/264 (51%), Gaps = 6/264 (2%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D NI+ +I  S        ++EIG G G +T+ LL      + V+E 
Sbjct: 2   HKARKRFGQNFLHDQNIIDRIVGSIMPKPDQHMVEIGPGRGAITEPLLEATDGHLDVVEL 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   P+L+    ++   L I + DAL+ DF        P+R++ NLPYNI T L+F+ +
Sbjct: 62  DRDLIPMLRAQFFRYEG-LTIHEADALQFDFGSLATDDRPLRLVGNLPYNISTPLMFHLL 120

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S   +    + +  + QKEV +R+ A      YGRL ++  +  +A  +F + P  F P+
Sbjct: 121 S---YSDVIKDMHFMLQKEVVQRLCAAPGDNAYGRLGIMMQYHCEARYLFTVPPGAFSPA 177

Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S ++   P   P       E   K+ + +F +RRKTL+ +LK L   +     GI+
Sbjct: 178 PKVESAIVRLTPRKAPKREATNYELFAKVVKASFAQRRKTLKNNLKDLLDGDGFEALGIQ 237

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
              RAE L I+DF RI N +   Q
Sbjct: 238 PGARAETLPIDDFVRIANYVDSVQ 261


>gi|188583141|ref|YP_001926586.1| dimethyladenosine transferase [Methylobacterium populi BJ001]
 gi|179346639|gb|ACB82051.1| dimethyladenosine transferase [Methylobacterium populi BJ001]
          Length = 291

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 126/280 (45%), Positives = 185/280 (66%), Gaps = 8/280 (2%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L+ ++  + + PKK +GQNFL DLN+  +IA S+G+L+G+TV+E+G GPG LT+ 
Sbjct: 9   DGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTRA 68

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL  GA++V+ IE+D +  P L +I++ +P RL++I  DA+  D         P+RI+AN
Sbjct: 69  LLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGDG-PVRIVAN 127

Query: 125 LPYNIGTRLLFNWISA----DTWPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTG 179
           LPYN+ T LL  W+ A    + WPP+WES TL+FQ+EV ERI A ++   +YGRL VL G
Sbjct: 128 LPYNVATVLLTGWLGAETRDERWPPWWESATLMFQREVAERIVADESDRANYGRLGVLCG 187

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           WRT+AT++FD++P  F P PKVTS+++H  P   P+PC + +L++IT+ AFG+RRK LRQ
Sbjct: 188 WRTQATILFDVAPSAFVPPPKVTSSIVHLRPRPEPLPCRIAALERITRAAFGQRRKMLRQ 247

Query: 240 SLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK    +   LL  AG+    RAE + +  F  +   L 
Sbjct: 248 SLKAATPDPARLLAAAGLPETARAEEIPVAGFVALARALE 287


>gi|253689996|ref|YP_003019186.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259494254|sp|C6DEY6|RSMA_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|251756574|gb|ACT14650.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 272

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 100/280 (35%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
             +     R   VIE D+     L +      ++L IIQ DA+ +DF         P+R+
Sbjct: 53  APVGERMDR-FTVIELDRDLAARL-ETHPTLKDKLTIIQQDAMTIDFAALAEQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  +GRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF +RRKTLR 
Sbjct: 168 CQVIPVLEVPPEAFKPAPKVDSAVVRLVPHTEIPYPVSDIRVLSRITTEAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L   ++L + GI+   RAEN+S+E +CR+ N L+++
Sbjct: 228 SLGNLFTPDVLAELGIDATSRAENVSVEQYCRLANWLSEH 267


>gi|258623405|ref|ZP_05718409.1| dimethyladenosine transferase [Vibrio mimicus VM573]
 gi|262172456|ref|ZP_06040134.1| dimethyladenosine transferase [Vibrio mimicus MB-451]
 gi|258584371|gb|EEW09116.1| dimethyladenosine transferase [Vibrio mimicus VM573]
 gi|261893532|gb|EEY39518.1| dimethyladenosine transferase [Vibrio mimicus MB-451]
          Length = 272

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 86/270 (31%), Positives = 134/270 (49%), Gaps = 7/270 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   
Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEAL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283
           GI   +R ENL++  F  + N L      A
Sbjct: 241 GINPGMRPENLTLAQFVALANWLDAQHQKA 270


>gi|315163005|gb|EFU07022.1| dimethyladenosine transferase [Enterococcus faecalis TX0645]
          Length = 295

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 149/291 (51%), Gaps = 20/291 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+ L 
Sbjct: 10  PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++
Sbjct: 70  MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +         + ++ QKEV +RI A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S +I       P       +   K+T+ +F  RRKTL  +
Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTCRATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           L    G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|253988048|ref|YP_003039404.1| dimethyladenosine transferase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779498|emb|CAQ82659.1| dimethyladenosine transferase [Photorhabdus asymbiotica]
          Length = 272

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 151/285 (52%), Gaps = 16/285 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLTDQFVIDSIVAAINPQPGQAVLEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121
           + +      K+ V+E D+     L+ +  Q  ++L IIQ DA+ V+F +       P+R+
Sbjct: 53  EPVGER-MDKMTVVELDRDLAARLQ-VHPQLKDKLTIIQQDAMTVNFGELSQQRGLPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A   S  +GRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPGSKAFGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  IPH + P P   +  L +IT +AF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPTAFTPAPKVDSAVVRLIPHKSIPYPVKNIRMLSRITTQAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284
           SL  L     L + GI+ + RAEN+S+E +C++ N L++  ++ +
Sbjct: 228 SLGDLFTVEQLTEFGIDPSTRAENISVEQYCKMANYLSEQPEMQL 272


>gi|153827422|ref|ZP_01980089.1| dimethyladenosine transferase [Vibrio cholerae MZO-2]
 gi|149738665|gb|EDM53008.1| dimethyladenosine transferase [Vibrio cholerae MZO-2]
          Length = 282

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 140/275 (50%), Gaps = 8/275 (2%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           NN   +++  + H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+
Sbjct: 6   NNLEKTMRNDV-HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITE 64

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
             +     K  VIE D+     L++   +  ++L I + DA++ DF++    ++ +R+  
Sbjct: 65  P-VGREVDKFTVIELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFG 122

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYNI T L+F+           + +  + QKEV  R+ A   +  YGRL+V+  +  K
Sbjct: 123 NLPYNISTPLMFHLFEFHR---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCK 179

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSL 241
              + ++ P+ F P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   
Sbjct: 180 VVPVLEVPPNAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCY 239

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           K L     L   GI   +R ENL++  F  + N L
Sbjct: 240 KGLAEPETLETLGINPGMRPENLTLAQFVALANWL 274


>gi|156973129|ref|YP_001444036.1| dimethyladenosine transferase [Vibrio harveyi ATCC BAA-1116]
 gi|166221714|sp|A7MWC6|RSMA_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|156524723|gb|ABU69809.1| hypothetical protein VIBHAR_00808 [Vibrio harveyi ATCC BAA-1116]
          Length = 269

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 137/266 (51%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L  L+++ +E F +RRKT+R   K L    +L + 
Sbjct: 181 VPPPKVDSAVVRLVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKALISAEVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G+  ++R ENL+++ F  + N L DN
Sbjct: 241 GVNPSMRPENLTLQQFVAMANWLADN 266


>gi|84393695|ref|ZP_00992445.1| dimethyladenosine transferase [Vibrio splendidus 12B01]
 gi|84375694|gb|EAP92591.1| dimethyladenosine transferase [Vibrio splendidus 12B01]
          Length = 271

 Score =  301 bits (771), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 91/265 (34%), Positives = 138/265 (52%), Gaps = 7/265 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGKL-VDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++      ++L I + DA+K DFE+    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PDLADKLTIYEGDAMKFDFEQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K T + ++ P  F
Sbjct: 124 HLFEFHK---DVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVTPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+   P+   P P   L+ L ++ +E F +RRKT+R   K L  + +L + 
Sbjct: 181 VPPPKVDSAVVRLQPYEVLPYPAKDLKWLDRVCREGFNQRRKTVRNCYKSLIDKEVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G+   +R ENL++E F  + N L D
Sbjct: 241 GVNPGMRPENLTLEQFVDMANWLYD 265


>gi|163853045|ref|YP_001641088.1| dimethyladenosine transferase [Methylobacterium extorquens PA1]
 gi|163664650|gb|ABY32017.1| dimethyladenosine transferase [Methylobacterium extorquens PA1]
          Length = 296

 Score =  301 bits (771), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 128/281 (45%), Positives = 185/281 (65%), Gaps = 8/281 (2%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
            +    L+ ++  + + PKK +GQNFL DLN+  +IA S+G+L+G+TV+E+G GPG LT+
Sbjct: 8   TDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTR 67

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
            LL  GA++V+ IE+D +  P L +I++ +P RL++I  DA+  D         P+RI+A
Sbjct: 68  ALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGDG-PVRIVA 126

Query: 124 NLPYNIGTRLLFNWISADT----WPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLT 178
           NLPYN+ T LL  W+ ADT    WPP+WES TL+FQ+EV ERI A ++   +YGRL VL 
Sbjct: 127 NLPYNVATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLC 186

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
           GWRT+AT++FD++P  F P PKVTS+V+H  P   P+PC +  L+++T+ AFG+RRK LR
Sbjct: 187 GWRTQATILFDVAPSAFVPPPKVTSSVVHLRPRPEPLPCRIADLERVTRAAFGQRRKMLR 246

Query: 239 QSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           QSLK    +   LL  AG+    RAE + +  F  +   L 
Sbjct: 247 QSLKAATPDPIRLLTAAGLPETARAEEIPVVGFVAMARALE 287


>gi|261493820|ref|ZP_05990334.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495045|ref|ZP_05991512.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309287|gb|EEY10523.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310523|gb|EEY11712.1| dimethyladenosine transferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 288

 Score =  301 bits (771), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 148/285 (51%), Gaps = 18/285 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  N          H     +K  GQNFL D+NI+  I  +    +G  ++EIG G G 
Sbjct: 1   MSSTNSK-------KHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFLLEIGPGLGA 53

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----S 116
           LT+ +  L   K+ V+E D+     L+        +L II+ DAL+ +   +FN      
Sbjct: 54  LTEPVAEL-VDKLTVVEIDRDLAERLRHH-PFLNQKLTIIEQDALRFNVRDYFNQLNLDE 111

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +R+  NLPYNI T L+F+ +   T+    + +  + QKEV +R+ A  NS  YGRL++
Sbjct: 112 DSVRVFGNLPYNISTPLIFHLL---TFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTI 168

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P+PKV S V+  +P+   P P   +  L ++T +AF +RR
Sbjct: 169 MAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNRVTTQAFNQRR 228

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KTLR +L  L     L   G++   RAENL+I D+ R+ N L DN
Sbjct: 229 KTLRNALSTLFSAEQLEALGVDLTARAENLTIADYVRLANWLHDN 273


>gi|114328859|ref|YP_746016.1| dimethyladenosine transferase [Granulibacter bethesdensis CGDNIH1]
 gi|114317033|gb|ABI63093.1| dimethyladenosine transferase [Granulibacter bethesdensis CGDNIH1]
          Length = 286

 Score =  301 bits (771), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 110/269 (40%), Positives = 163/269 (60%), Gaps = 6/269 (2%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+ +++ + +  +K +GQ+FLLD +++ +I   +G + G T IEIG GPG LT+ LL 
Sbjct: 17  PPLRDVIARHGLEARKALGQHFLLDPHLMARIVREAGPMQGRTAIEIGPGPGGLTRALLE 76

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             A +V+ IE D +  P L++++  +P+RL +++ DA++ D       + P RI+ANLPY
Sbjct: 77  TAAERVVAIELDHRAIPALEELAGFYPDRLTVLEADAMRADLGTL--TTGPRRIVANLPY 134

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+GT LL  W+        +ES+TL+FQ+EV ERI A   S  YGRL VL  W  +  M+
Sbjct: 135 NVGTPLLVGWLRQAA---LFESMTLMFQQEVAERICAAPGSDAYGRLGVLAQWTCRVEML 191

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
             + P  F P PKV S V    P    P P    +++++T  AFG+RRK LR +LK LGG
Sbjct: 192 MSVPPGAFHPPPKVYSAVAALWPREEQPSPALFTAMERVTAAAFGQRRKMLRGALKSLGG 251

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           E LL +AGI  + RAE L+IE+F R+   
Sbjct: 252 EGLLSRAGIAGDRRAETLTIEEFDRLART 280


>gi|302384604|ref|YP_003820426.1| dimethyladenosine transferase [Clostridium saccharolyticum WM1]
 gi|302195232|gb|ADL02803.1| dimethyladenosine transferase [Clostridium saccharolyticum WM1]
          Length = 289

 Score =  301 bits (771), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 89/293 (30%), Positives = 150/293 (51%), Gaps = 19/293 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N   ++  I+  Y+   +K  GQNFL+D ++L KI  ++G      V+EIG G G +
Sbjct: 3   TLGNPQKTI-EIIQKYEFAFQKKFGQNFLIDTHVLDKIITAAGVTKDDCVLEIGPGIGTM 61

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118
           TQ L    AR V+ +E D    PILK+  + + N + +I DD LKVD  +    +N   P
Sbjct: 62  TQYLAE-NARHVVAVEIDSNLIPILKETLTDYEN-VTVIHDDILKVDINQIAEQYNGGRP 119

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++      +      +++T++ QKEV +R+     S  YG LS+  
Sbjct: 120 IKVVANLPYYITTPIIMGLFENNVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAV 176

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236
            +  +  ++ ++ P+ F P P V S VI    H  P     ++  + ++ + +F +RRKT
Sbjct: 177 QYYAQPYIVANVPPNCFMPRPNVGSAVIRLTRHKEPAVKAEDAGLMFRLIRASFNQRRKT 236

Query: 237 LRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           L+  L         R      +   G+  ++R E L++E F  ++N  T  +D
Sbjct: 237 LQNGLNNSPEIPYSREQIAEAVESLGLGPSIRGEALTLEQFASLSNYFTKMKD 289


>gi|270263922|ref|ZP_06192190.1| dimethyladenosine transferase [Serratia odorifera 4Rx13]
 gi|270042115|gb|EFA15211.1| dimethyladenosine transferase [Serratia odorifera 4Rx13]
          Length = 272

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 99/280 (35%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNNK H             +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNKVHQ--------GHFARKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +     R + VIE D+     L +   Q  ++L I Q DA+ V+F +       P+R+
Sbjct: 53  EPVGARMDR-MTVIELDRDLAARLANH-PQLKDKLTIHQQDAMTVNFAEMAEQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S          +  + QKEV  R+ A  NS  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  +PH  NP P   +  L +IT +AF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPTSFTPAPKVDSAVVRLVPHQVNPNPVGDVRMLSRITTQAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L     L + G++  LRAEN+S+  +C++ N L+ N
Sbjct: 228 SLGDLFTPEQLTELGVDPTLRAENISVAQYCKLANWLSAN 267


>gi|260775525|ref|ZP_05884422.1| dimethyladenosine transferase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608706|gb|EEX34871.1| dimethyladenosine transferase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 268

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 86/267 (32%), Positives = 132/267 (49%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L+    +   +L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLR-THPELAEKLTIHEGDAMRFDFTQLVKPNNRLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEYHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L  L ++ ++ F +RRKT+R   K L    +L Q 
Sbjct: 181 VPPPKVDSAVVRLVPYETLPYPATSLNWLDRVCRDGFNQRRKTVRNCYKSLVNAEILEQL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI   +R ENL++E F  + N L  N 
Sbjct: 241 GINPGMRPENLTLEQFVDLANWLDANH 267


>gi|114048606|ref|YP_739156.1| dimethyladenosine transferase [Shewanella sp. MR-7]
 gi|123131134|sp|Q0HS06|RSMA_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|113890048|gb|ABI44099.1| dimethyladenosine transferase [Shewanella sp. MR-7]
          Length = 268

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D N++ +I  +    +   ++EIG G G LT+ + T     + V
Sbjct: 6   HLGHTARKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L++      ++L I Q DAL+ DF +       +++  NLPYNI T L+F
Sbjct: 65  VELDRDLVERLQNH-PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E++  + QKEV  R++A   +  YGRL+V+  +  +   + ++ PH F
Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P PC  +  L+++   AF  RRKTLR +LK++  +    Q 
Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+ NLR E +S+E +  + N++ D Q
Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267


>gi|134297956|ref|YP_001111452.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
 gi|134050656|gb|ABO48627.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
          Length = 293

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 99/298 (33%), Positives = 145/298 (48%), Gaps = 22/298 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        +K I++ Y    +K +GQNFL+D NI+ KI  ++    G  V EIG G G 
Sbjct: 1   MRELTSPSVVKDIINTYGFRVRKALGQNFLMDANIIDKIVNAAELTPGDLVFEIGPGLGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116
           LTQ L    A KVI +E D+   PIL +  +   N  +++  DALKVDF++         
Sbjct: 61  LTQRLA-RSAGKVIAVEIDKNLLPILTETLTDFDNA-QVVHADALKVDFDRLAAEHTEGG 118

Query: 117 -----SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
                   +++ANLPY I T +L + +++      ++ L ++ QKEV ER+ A      Y
Sbjct: 119 FGKGAKSFKLVANLPYYITTPILMHLLTS---GFNFDCLVVMMQKEVAERLQASPGGKDY 175

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEA 229
           G LS+   + T   ++  +   VFFP+P V S VI       P       E   K+ + A
Sbjct: 176 GSLSIAVQYYTVPEIVTRVPKTVFFPAPDVESAVIQLTRRKRPPVTLESEEVFFKVVRAA 235

Query: 230 FGKRRKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           FG+RRKTL  SL   G         +L +A I+   R E L+IEDF  + N     Q+
Sbjct: 236 FGQRRKTLLNSLTGSGLAEKETWIKILEEAAIDPTRRGETLTIEDFANLANTYHRYQE 293


>gi|15640470|ref|NP_230097.1| dimethyladenosine transferase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121729955|ref|ZP_01682375.1| dimethyladenosine transferase [Vibrio cholerae V52]
 gi|153830829|ref|ZP_01983496.1| dimethyladenosine transferase [Vibrio cholerae 623-39]
 gi|227080654|ref|YP_002809205.1| dimethyladenosine transferase [Vibrio cholerae M66-2]
 gi|254292213|ref|ZP_04962980.1| dimethyladenosine transferase [Vibrio cholerae AM-19226]
 gi|297580583|ref|ZP_06942509.1| dimethyladenosine transferase [Vibrio cholerae RC385]
 gi|298501025|ref|ZP_07010826.1| dimethyladenosine transferase [Vibrio cholerae MAK 757]
 gi|9654867|gb|AAF93616.1| dimethyladenosine transferase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121628295|gb|EAX60805.1| dimethyladenosine transferase [Vibrio cholerae V52]
 gi|148873688|gb|EDL71823.1| dimethyladenosine transferase [Vibrio cholerae 623-39]
 gi|150421870|gb|EDN13850.1| dimethyladenosine transferase [Vibrio cholerae AM-19226]
 gi|227008542|gb|ACP04754.1| dimethyladenosine transferase [Vibrio cholerae M66-2]
 gi|227012297|gb|ACP08507.1| dimethyladenosine transferase [Vibrio cholerae O395]
 gi|297534999|gb|EFH73834.1| dimethyladenosine transferase [Vibrio cholerae RC385]
 gi|297540273|gb|EFH76333.1| dimethyladenosine transferase [Vibrio cholerae MAK 757]
          Length = 282

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 139/275 (50%), Gaps = 8/275 (2%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           NN   +++  + H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+
Sbjct: 6   NNLEKTMRNDV-HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITE 64

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
             +     K  VIE D+     L++   +  ++L I + DA++ DF++    ++ +R+  
Sbjct: 65  P-VGREVDKFTVIELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFG 122

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYNI T L+F+           + +  + QKEV  R+ A   +  YGRL+V+  +  K
Sbjct: 123 NLPYNISTPLMFHLFEFHR---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCK 179

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSL 241
              + ++ P  F P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   
Sbjct: 180 VVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCY 239

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           K L     L   GI   +R ENL++  F  + N L
Sbjct: 240 KGLAEPETLETLGINPGMRPENLTLAQFVALANWL 274


>gi|325276041|ref|ZP_08141856.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas sp. TJI-51]
 gi|324098826|gb|EGB96857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas sp. TJI-51]
          Length = 267

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 142/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  I+ +I  +  +  G  ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGIIDRILRAIHAKPGEHLLEIGPGQGALTEGLLGSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL+   +   N   + Q DALK DF +       ++++ NLPYNI T L+
Sbjct: 62  VVELDKDLVPILQHKFADRSN-FRLHQGDALKFDFNRLGVPPRSLKVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLSHAG---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH          + L+++ ++AF +RRKTLR ++K L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHEVLPHPAKDAQLLERVVRDAFNQRRKTLRNTMKGLLDSAAIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           AG++ +LR E L +  F R+ + L D 
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLADQ 264


>gi|145300235|ref|YP_001143076.1| dimethyladenosine transferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853007|gb|ABO91328.1| dimethyladenosine transferase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 275

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 145/281 (51%), Gaps = 11/281 (3%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M++K  S K    H     +K  GQNFL D  ++ +I  +     G  ++EIG G   LT
Sbjct: 1   MSSKVQSNKV---HMGHTARKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALT 57

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRI 121
           + +      K+ V+E D+     L++      ++L +I+ DA++ DF         P+RI
Sbjct: 58  EPVA-SQMDKMTVVELDRDLAARLREH-PTLKDKLTVIEADAMRFDFGTLMGEGKGPLRI 115

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+      +    E +  + QKEV  R++A   S  YGRLSV+  + 
Sbjct: 116 FGNLPYNISTPLIFHLCD---FADRVEDMHFMLQKEVVLRMSAGPGSKAYGRLSVMVQYY 172

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH NP  +   +  L ++  E FG+RRKT+R 
Sbjct: 173 CQVIPVLEVGPGAFKPAPKVDSAVVRLVPHKNPTIVAKDIRCLSRVCTEGFGQRRKTIRN 232

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           S      +  L + GI+ NLR ENLS+E F  I N L D Q
Sbjct: 233 SFANFITDAQLTELGIDGNLRPENLSLEQFVMIANWLADQQ 273


>gi|15595789|ref|NP_249283.1| dimethyladenosine transferase [Pseudomonas aeruginosa PAO1]
 gi|27151603|sp|Q9I5U5|RSMA_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|9946464|gb|AAG03981.1|AE004495_5 rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           PAO1]
          Length = 268

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + 
Sbjct: 3   ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE DQ   P+LK +     +R  + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +      P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLEHA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++   P   P       + L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           A ++  LR E L +  F R+ N L +
Sbjct: 238 AEVDPTLRPEQLDLAAFVRLANQLAE 263


>gi|256964244|ref|ZP_05568415.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704]
 gi|307271936|ref|ZP_07553204.1| dimethyladenosine transferase [Enterococcus faecalis TX0855]
 gi|256954740|gb|EEU71372.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704]
 gi|306511442|gb|EFM80444.1| dimethyladenosine transferase [Enterococcus faecalis TX0855]
          Length = 295

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 149/291 (51%), Gaps = 20/291 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+ L 
Sbjct: 10  PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++
Sbjct: 70  MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +         + ++ QKEV +RI A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESSL---DLAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S +I       P       +   K+T+ +F  RRKTL  +
Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKVSFQLRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           L    G++          L +A I+ + R E LS+E+F R++N L  N+ +
Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV 295


>gi|50086027|ref|YP_047537.1| dimethyladenosine transferase [Acinetobacter sp. ADP1]
 gi|62900521|sp|Q6F8A0|RSMA_ACIAD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49532003|emb|CAG69715.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter sp. ADP1]
          Length = 274

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 92/262 (35%), Positives = 138/262 (52%), Gaps = 7/262 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
                  +K  GQNFL D  ++ KI  S     G  V+EIG G   LT  L+      + 
Sbjct: 14  KEEGHKARKRFGQNFLHDQRVIAKIVRSVNPRPGDNVVEIGPGLAALTSPLIGEC-DALT 72

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+     L D    HP RL I++ DALK DF +     SP+R++ NLPYNI T LL
Sbjct: 73  VVELDRDLAAGLPDRV-PHPERLTIVEADALKYDFSQLATQESPLRVVGNLPYNISTPLL 131

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +    +    + +  + QKEV +RITA+ N+  YGRLSV+  +  + T +F++    
Sbjct: 132 FHLLE---FGDKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYFCQPTFLFEVPAGA 188

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKVTS V   +P+          ++L ++    F +RRKTLR SLK +  ++   +
Sbjct: 189 FNPPPKVTSAVFRLVPYKEKPIVAKDEKALSRLVGHVFTQRRKTLRNSLKGMLADDAFDK 248

Query: 253 AGIETNLRAENLSIEDFCRITN 274
           AGI+   R E L++  F  +++
Sbjct: 249 AGIDPMARPETLTLAQFVALSD 270


>gi|255319639|ref|ZP_05360849.1| dimethyladenosine transferase [Acinetobacter radioresistens SK82]
 gi|262379013|ref|ZP_06072170.1| dimethyladenosine transferase [Acinetobacter radioresistens SH164]
 gi|255303323|gb|EET82530.1| dimethyladenosine transferase [Acinetobacter radioresistens SK82]
 gi|262300298|gb|EEY88210.1| dimethyladenosine transferase [Acinetobacter radioresistens SH164]
          Length = 270

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 93/259 (35%), Positives = 138/259 (53%), Gaps = 7/259 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  +++KI  S     G  ++EIG G   LT  L+      + V+E
Sbjct: 13  GHKARKRFGQNFLHDQRVIEKIVRSVNPQPGDNIVEIGPGLAALTAPLIAEC-EALTVVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L      +P RL II+ DALK DF + F    P+R + NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLPGRV-PYPERLTIIESDALKYDFSQLFKEGQPLRAVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV +RITA+ N+  YGRLSV+  +  K T +F++ P  F P
Sbjct: 131 LE---FGDKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCKPTYLFEVPPGSFNP 187

Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKVTS V    P+ +        ++L ++    F +RRKTLR SLK +  EN   +AG+
Sbjct: 188 PPKVTSAVFRLEPYKDKPIVAQNEKALARLVSHVFTQRRKTLRNSLKGMLAENGFEKAGV 247

Query: 256 ETNLRAENLSIEDFCRITN 274
               R E L++ +F  +++
Sbjct: 248 NPMARPETLTLAEFVALSD 266


>gi|254362983|ref|ZP_04979047.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Mannheimia haemolytica
           PHL213]
 gi|153094639|gb|EDN75443.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Mannheimia haemolytica
           PHL213]
          Length = 288

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 149/285 (52%), Gaps = 18/285 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  N          H     +K  GQNFL D+NI+  I  +    +G  ++EIG G G 
Sbjct: 1   MSSTNSK-------KHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFLLEIGPGLGA 53

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----S 116
           LT+ +  L   K+ V+E D+     L+        +L II+ DAL+ +F  +FN      
Sbjct: 54  LTEPVAEL-VDKLTVVEIDRDLAERLRHH-PFLNQKLTIIEQDALRFNFRDYFNQLNLDE 111

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +R+  NLPYNI T L+F+ +   T+    + +  + QKEV +R+ A  NS  YGRL++
Sbjct: 112 DSVRVFGNLPYNISTPLIFHLL---TFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTI 168

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P+PKV S V+  +P+   P P   +  L ++T +AF +RR
Sbjct: 169 MAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNRVTTQAFNQRR 228

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KTLR +L  L     L   G++   RAENL+I D+ R+ N L DN
Sbjct: 229 KTLRNALSTLFSAEQLDALGVDLTARAENLTIADYVRLANWLHDN 273


>gi|258627053|ref|ZP_05721851.1| dimethyladenosine transferase [Vibrio mimicus VM603]
 gi|258580727|gb|EEW05678.1| dimethyladenosine transferase [Vibrio mimicus VM603]
          Length = 272

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/270 (31%), Positives = 134/270 (49%), Gaps = 7/270 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVRPNNKLRVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   
Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEAL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283
           GI   +R ENL++  F  + N L      A
Sbjct: 241 GINPGMRPENLTLAQFVALANWLDAQHQKA 270


>gi|262275064|ref|ZP_06052875.1| dimethyladenosine transferase [Grimontia hollisae CIP 101886]
 gi|262221627|gb|EEY72941.1| dimethyladenosine transferase [Grimontia hollisae CIP 101886]
          Length = 268

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/268 (32%), Positives = 140/268 (52%), Gaps = 7/268 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G LT+ +      K+ V
Sbjct: 6   HLGHRARKRFGQNFLNDPYIIDGIVSAINPQPGENLVEIGPGLGALTEPVA-REVDKLSV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L++   +  ++L I + DA+K DF +  +   P+RI  NLPYN+ T L+F
Sbjct: 65  VELDRDLAERLRNH-PELADKLTIYEGDAMKFDFTQLSSDDKPLRIFGNLPYNVSTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +  S   +    + +  + QKEV  R+ A  NS  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFS---FAGKVKDMHFMLQKEVVNRLAAGPNSKAYGRLTVMAQYYCKVVPVLEVPPSAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S V+  +PH   P P   L+ L+++ +E F +RRKT+R   K L   + +   
Sbjct: 181 KPAPKVDSAVVRLVPHKELPHPTTSLKWLERVCREGFNQRRKTVRNCYKSLIDADTMESL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQD 281
           GI+ + R E+L++  F  + N +  N  
Sbjct: 241 GIDPSARPESLTLAQFVALANWMDANHP 268


>gi|85374607|ref|YP_458669.1| dimethyladenosine transferase [Erythrobacter litoralis HTCC2594]
 gi|122544064|sp|Q2N8W9|RSMA_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|84787690|gb|ABC63872.1| dimethyladenosine transferase [Erythrobacter litoralis HTCC2594]
          Length = 281

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 110/277 (39%), Positives = 164/277 (59%), Gaps = 4/277 (1%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+ +++ + +   K +GQNFL D  +L +IA   G L+   V+EIG GPG LT+ LL 
Sbjct: 5   PPLRDVIAKHGLSASKALGQNFLFDAQLLDRIAGIPGGLENRAVLEIGPGPGGLTRALLK 64

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GAR V  IE D++  P L ++S  +P +L +I  DA+K+D  +      P  ++ANLPY
Sbjct: 65  AGAR-VTAIEMDRRCLPALAELSEVYPGKLSVIHGDAMKLDHAELM--GEPFAVVANLPY 121

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+GT L   W+  +TWPP W SLTL+FQ+EV +RI +   +  YGRL+VL  WR+ A+M 
Sbjct: 122 NVGTALFVRWLGGETWPPQWTSLTLMFQQEVAQRIVSTPGTSAYGRLAVLAQWRSAASMP 181

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GG 246
             +    F P PKV S ++H  P   P      +L+++T+ AFG+RRK LRQSLK + G 
Sbjct: 182 MKVHRSAFTPPPKVMSAIVHVTPDEMPEGVSARTLERLTEAAFGQRRKMLRQSLKGVPGA 241

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
              L +  IE   RAE +++E+F  +   L  ++  +
Sbjct: 242 VETLAEVAIEETRRAETVTVEEFVALARRLGASRPSS 278


>gi|59710893|ref|YP_203669.1| dimethyladenosine transferase [Vibrio fischeri ES114]
 gi|197334233|ref|YP_002155045.1| dimethyladenosine transferase [Vibrio fischeri MJ11]
 gi|62900449|sp|Q5E865|RSMA_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732638|sp|B5FGG5|RSMA_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|59478994|gb|AAW84781.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Vibrio fischeri ES114]
 gi|197315723|gb|ACH65170.1| dimethyladenosine transferase [Vibrio fischeri MJ11]
          Length = 272

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 137/269 (50%), Gaps = 7/269 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  ++  I  +   L G  ++EIG G G +T+  +     K  V
Sbjct: 8   HLGHKARKRFGQNFLNDPYVIDGIVSAINPLPGQNLVEIGPGLGAITEP-VGREVDKFTV 66

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 67  IELDRDLAERLRNH-PELGSKLTIHEGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMF 125

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 126 HLFEFHK---DVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVMPVLEVPPTAF 182

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L+ L ++ +E F +RRKT+R   K L  +  L + 
Sbjct: 183 VPPPKVDSAVVRLVPYETLPYPATNLKWLDRVCREGFNQRRKTVRNCYKALLTKEQLEEL 242

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDI 282
           GI  ++R ENL++E F  + N L  N   
Sbjct: 243 GINPSMRPENLTLEQFVNMANWLDANHSA 271


>gi|116054320|ref|YP_788765.1| dimethyladenosine transferase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889333|ref|YP_002438197.1| dimethyladenosine transferase [Pseudomonas aeruginosa LESB58]
 gi|254237194|ref|ZP_04930517.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           C3719]
 gi|296387098|ref|ZP_06876597.1| dimethyladenosine transferase [Pseudomonas aeruginosa PAb1]
 gi|115589541|gb|ABJ15556.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169125|gb|EAZ54636.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           C3719]
 gi|218769556|emb|CAW25316.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           LESB58]
          Length = 268

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + 
Sbjct: 3   ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE DQ   P+LK +     +R  + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +      P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLEHA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++   P   P       + L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           A ++  LR E L +  F R+ N L +
Sbjct: 238 AEVDPTLRPEQLDLAAFVRLANRLAE 263


>gi|27364120|ref|NP_759648.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio vulnificus CMCP6]
 gi|37678662|ref|NP_933271.1| dimethyladenosine transferase [Vibrio vulnificus YJ016]
 gi|320157505|ref|YP_004189884.1| dimethyladenosine transferase [Vibrio vulnificus MO6-24/O]
 gi|31340188|sp|Q8DED2|RSMA_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900560|sp|Q7MP86|RSMA_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|27360238|gb|AAO09175.1| dimethyladenosine transferase [Vibrio vulnificus CMCP6]
 gi|37197402|dbj|BAC93242.1| dimethyladenosine transferase [Vibrio vulnificus YJ016]
 gi|319932817|gb|ADV87681.1| dimethyladenosine transferase [Vibrio vulnificus MO6-24/O]
          Length = 268

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/267 (32%), Positives = 136/267 (50%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HMGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L+    +  ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLR-THPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L+ L+++ +E F +RRKT+R   K L  E +L + 
Sbjct: 181 VPPPKVDSAVVRLVPYETLPHPANNLQWLERVCREGFNQRRKTVRNCYKSLMSEQVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           G+   +R ENL+++ F  + N L  N 
Sbjct: 241 GVNPGMRPENLTLQQFVAMANWLDANH 267


>gi|209693971|ref|YP_002261899.1| dimethyladenosine transferase [Aliivibrio salmonicida LFI1238]
 gi|226729749|sp|B6EL48|RSMA_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|208007922|emb|CAQ78053.1| dimethyladenosine transferase [Aliivibrio salmonicida LFI1238]
          Length = 277

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/266 (32%), Positives = 134/266 (50%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     KK  GQNFL D  ++  I  +   L G  ++EIG G G +T+  +     K  V
Sbjct: 8   HLGHKAKKRFGQNFLNDPYVIDGIVSAINPLPGQNLVEIGPGLGAITEP-VGREIDKFTV 66

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L+    +  ++L I + DA++ DF +     + +RI  NLPYNI T L+F
Sbjct: 67  IELDRDLAARLR-THPELGSKLTIYEGDAMRFDFTQLIQEGNKLRIFGNLPYNISTPLMF 125

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 126 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVMPVLEVPPTAF 182

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L+ L ++ +E F +RRKT+R   K L  +  L   
Sbjct: 183 VPPPKVDSAVVRLVPYEVLPFPAKNLKWLDRVCREGFNQRRKTVRNCFKALLTKEQLEAL 242

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G+  + R ENL++E F  + N L DN
Sbjct: 243 GVNPSHRPENLTLEQFVIMANWLNDN 268


>gi|85716334|ref|ZP_01047307.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
 gi|85696850|gb|EAQ34735.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
          Length = 284

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 122/279 (43%), Positives = 177/279 (63%), Gaps = 3/279 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+ ++  + +  +K +GQNFLLDLN+  KIA ++G L G TVIEIG GPG 
Sbjct: 1   MSVIDDLPPLRDVIKRHALSARKSLGQNFLLDLNLTAKIARAAGQLQGATVIEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA+ VI IE+D++    L++IS ++P+RL I+  DA   D +     +   +
Sbjct: 61  LTRALLAAGAKHVIAIERDERALGPLEEISDRYPDRLTIVNGDATNFDPQPLLGTTR-AK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPYNI T LL  W+S + WPP+++++ L+FQ+EV ERI A++N   YGRL+VL+ W
Sbjct: 120 IVANLPYNIATALLIRWLSIEPWPPWYDAMVLMFQREVAERIVARENDEAYGRLAVLSNW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           R +  ++F ISP  F P P+VTS+V+  IP  +P PC    L+++   AFG RRK LRQS
Sbjct: 180 RAETKILFHISPAAFVPQPQVTSSVVRLIPRESPEPCDRRLLEQVAAAAFGHRRKMLRQS 239

Query: 241 LKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           LK L     +L   AGI+   RAE + I  F  +   L 
Sbjct: 240 LKSLPADPASLAAAAGIDPARRAETVPISGFVAMARELA 278


>gi|313111762|ref|ZP_07797555.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           39016]
 gi|310884057|gb|EFQ42651.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           39016]
          Length = 268

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + 
Sbjct: 3   ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE DQ   P+LK +     +R  + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFTSLVESGEKLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +      P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLEHA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++   P   P       + L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           A ++  LR E L +  F R+ N L +
Sbjct: 238 AEVDPTLRPEQLDLAAFVRLANRLAE 263


>gi|261208234|ref|ZP_05922907.1| dimethyladenosine transferase [Enterococcus faecium TC 6]
 gi|289565965|ref|ZP_06446404.1| dimethyladenosine transferase [Enterococcus faecium D344SRF]
 gi|294615973|ref|ZP_06695800.1| dimethyladenosine transferase [Enterococcus faecium E1636]
 gi|294617634|ref|ZP_06697262.1| dimethyladenosine transferase [Enterococcus faecium E1679]
 gi|260077491|gb|EEW65209.1| dimethyladenosine transferase [Enterococcus faecium TC 6]
 gi|289162249|gb|EFD10110.1| dimethyladenosine transferase [Enterococcus faecium D344SRF]
 gi|291591159|gb|EFF22841.1| dimethyladenosine transferase [Enterococcus faecium E1636]
 gi|291596098|gb|EFF27363.1| dimethyladenosine transferase [Enterococcus faecium E1679]
          Length = 294

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 152/288 (52%), Gaps = 20/288 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L 
Sbjct: 10  PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A++V+  E D +  P+L D    + N + I+  D LK D      + F+   P++++
Sbjct: 70  KH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +D      + L ++ QKEV +RI+A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           +A + F +   VF P P V S ++       P       ++  ++T+ AF +RRKTL  +
Sbjct: 185 EANLAFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+   G++          L  AGI+   R E LS+++F  ++N +++N
Sbjct: 245 LQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNAMSEN 292


>gi|262189700|ref|ZP_06048068.1| dimethyladenosine transferase [Vibrio cholerae CT 5369-93]
 gi|262034420|gb|EEY52792.1| dimethyladenosine transferase [Vibrio cholerae CT 5369-93]
          Length = 271

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 133/263 (50%), Gaps = 7/263 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   
Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETL 240

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
           GI   +R ENL++  F  + N L
Sbjct: 241 GINPGMRPENLTLAQFVALANWL 263


>gi|261209782|ref|ZP_05924087.1| dimethyladenosine transferase [Vibrio sp. RC341]
 gi|260841172|gb|EEX67685.1| dimethyladenosine transferase [Vibrio sp. RC341]
          Length = 271

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 133/263 (50%), Gaps = 7/263 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   
Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLECLDRVVREGFNQRRKTVRNCYKGLAEPETLEAL 240

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
           GI   +R ENL++  F  + N L
Sbjct: 241 GINPGMRPENLTLAQFVALANWL 263


>gi|107099578|ref|ZP_01363496.1| hypothetical protein PaerPA_01000591 [Pseudomonas aeruginosa PACS2]
 gi|254243686|ref|ZP_04937008.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           2192]
 gi|126197064|gb|EAZ61127.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
           2192]
          Length = 268

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + 
Sbjct: 3   ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE DQ   P+LK +     +R  + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +      P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLEYA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++   P   P       + L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           A ++  LR E L +  F R+ N L +
Sbjct: 238 AEVDPTLRPEQLDLAAFVRLANRLAE 263


>gi|260752282|ref|YP_003225175.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551645|gb|ACV74591.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 278

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 119/265 (44%), Positives = 166/265 (62%), Gaps = 4/265 (1%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L+ +++ + +   K +GQNFLLD  +L +IA   G L   TV E+G GPG LT+ LL  
Sbjct: 8   PLRAVIARHGLSADKRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALLKA 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GA KV  +E+D++  P L ++S+  P++L++I  DA+++D          + I+ANLPYN
Sbjct: 68  GA-KVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAVL--GEHVHIVANLPYN 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           +GT LL  W++A TW P+W SLTL+FQKEV ERITA+  +PHYGRLSVL  WR++A + F
Sbjct: 125 VGTALLIRWLTAKTWQPWWSSLTLMFQKEVAERITAKVGTPHYGRLSVLAQWRSEAKLSF 184

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-E 247
            +    F P PKV S V+H  P   P    L +L+KIT  AF +RRK LRQSLK +    
Sbjct: 185 PVHRSAFVPPPKVMSAVVHLTPKDQPEGVSLGTLEKITAAAFNQRRKMLRQSLKNIEHMM 244

Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272
             L  AGI+   R E +S+ +F  I
Sbjct: 245 EALELAGIDATRRPETVSVAEFIAI 269


>gi|329574115|gb|EGG55692.1| dimethyladenosine transferase [Enterococcus faecalis TX1467]
          Length = 295

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 150/291 (51%), Gaps = 20/291 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+ L 
Sbjct: 10  PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++
Sbjct: 70  MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQAFQEKYPIKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +         + ++ QKEV +RI A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S +I       P       +   K+T+ +F  RRKTL  +
Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           L    G++          L +A I+++ R E LS+E+F R++N L  N+ +
Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDSSRRGETLSLEEFARLSNALEKNKPV 295


>gi|295401992|ref|ZP_06811954.1| dimethyladenosine transferase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294975994|gb|EFG51610.1| dimethyladenosine transferase [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 295

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 23/296 (7%)

Query: 1   MTMNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M  N    +    + IL  Y    KK +GQNFL+D NIL+KI + +G       IEIG G
Sbjct: 1   MNTNKDIATPGRTREILEKYGFSFKKSLGQNFLIDTNILRKIVDVAGLSRETGAIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----F 113
            G LT+ L    A+KV+  E DQ+  PIL+D  S + N + II  D LK D  +     F
Sbjct: 61  IGALTEQLARR-AKKVVAFEIDQRLLPILEDTLSPYEN-VRIIHQDVLKADIHRVIAEEF 118

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
             +S I ++ANLPY + T ++   ++ +        + ++ QKEV +RI+AQ  +  YG 
Sbjct: 119 TDASDIMVVANLPYYVTTPIIMKLLTDNLP---IRGIVVMLQKEVADRISAQPGTKDYGS 175

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFG 231
           LS+   + T+A  +  +   VF P P V S VI  I    P     +     ++ + +F 
Sbjct: 176 LSIAIQYYTEAEKIMTVPRTVFIPQPNVDSAVIRLIKRKQPPVDVDDESFFFQVVRASFA 235

Query: 232 KRRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +RRKT+  +L         ++   E +L + GI+   R E L++E+F  ++N L +
Sbjct: 236 QRRKTILNNLISNLPNGKARKEKIERILTENGIDPRRRGETLTMEEFAALSNALRE 291


>gi|113969249|ref|YP_733042.1| dimethyladenosine transferase [Shewanella sp. MR-4]
 gi|123325289|sp|Q0HLT2|RSMA_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|113883933|gb|ABI37985.1| dimethyladenosine transferase [Shewanella sp. MR-4]
          Length = 268

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D N++ +I  +    +   ++EIG G G LT+ + T     + V
Sbjct: 6   HLGHTARKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L++      ++L I Q DAL+ DF +       +++  NLPYNI T L+F
Sbjct: 65  VELDRDLVERLQNH-PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E++  + QKEV  R++A   +  YGRL+V+  +  +   + ++ PH F
Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P PC  +  L+++   AF  RRKTLR +LK++  +    Q 
Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDAEFEQL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+ NLR E +S+E +  + N++ D Q
Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267


>gi|121591750|ref|ZP_01678961.1| dimethyladenosine transferase [Vibrio cholerae 2740-80]
 gi|147673129|ref|YP_001218711.1| dimethyladenosine transferase [Vibrio cholerae O395]
 gi|153217221|ref|ZP_01950985.1| dimethyladenosine transferase [Vibrio cholerae 1587]
 gi|153803545|ref|ZP_01958131.1| dimethyladenosine transferase [Vibrio cholerae MZO-3]
 gi|153820212|ref|ZP_01972879.1| dimethyladenosine transferase [Vibrio cholerae NCTC 8457]
 gi|229507082|ref|ZP_04396588.1| dimethyladenosine transferase [Vibrio cholerae BX 330286]
 gi|229508763|ref|ZP_04398255.1| dimethyladenosine transferase [Vibrio cholerae B33]
 gi|229512627|ref|ZP_04402096.1| dimethyladenosine transferase [Vibrio cholerae TMA 21]
 gi|229519750|ref|ZP_04409193.1| dimethyladenosine transferase [Vibrio cholerae RC9]
 gi|229519987|ref|ZP_04409416.1| dimethyladenosine transferase [Vibrio cholerae TM 11079-80]
 gi|229525136|ref|ZP_04414541.1| dimethyladenosine transferase [Vibrio cholerae bv. albensis VL426]
 gi|229530287|ref|ZP_04419675.1| dimethyladenosine transferase [Vibrio cholerae 12129(1)]
 gi|229606262|ref|YP_002876910.1| dimethyladenosine transferase [Vibrio cholerae MJ-1236]
 gi|254850674|ref|ZP_05240024.1| dimethyladenosine transferase [Vibrio cholerae MO10]
 gi|255743826|ref|ZP_05417783.1| dimethyladenosine transferase [Vibrio cholera CIRS 101]
 gi|262147179|ref|ZP_06027985.1| dimethyladenosine transferase [Vibrio cholerae INDRE 91/1]
 gi|262167593|ref|ZP_06035297.1| dimethyladenosine transferase [Vibrio cholerae RC27]
 gi|27151608|sp|Q9KUS2|RSMA_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732637|sp|A5F8N2|RSMA_VIBC3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|121546388|gb|EAX56639.1| dimethyladenosine transferase [Vibrio cholerae 2740-80]
 gi|124113744|gb|EAY32564.1| dimethyladenosine transferase [Vibrio cholerae 1587]
 gi|124120912|gb|EAY39655.1| dimethyladenosine transferase [Vibrio cholerae MZO-3]
 gi|126509241|gb|EAZ71835.1| dimethyladenosine transferase [Vibrio cholerae NCTC 8457]
 gi|146315012|gb|ABQ19551.1| dimethyladenosine transferase [Vibrio cholerae O395]
 gi|229332060|gb|EEN97548.1| dimethyladenosine transferase [Vibrio cholerae 12129(1)]
 gi|229338717|gb|EEO03734.1| dimethyladenosine transferase [Vibrio cholerae bv. albensis VL426]
 gi|229342936|gb|EEO07925.1| dimethyladenosine transferase [Vibrio cholerae TM 11079-80]
 gi|229344439|gb|EEO09414.1| dimethyladenosine transferase [Vibrio cholerae RC9]
 gi|229350304|gb|EEO15255.1| dimethyladenosine transferase [Vibrio cholerae TMA 21]
 gi|229354166|gb|EEO19097.1| dimethyladenosine transferase [Vibrio cholerae B33]
 gi|229355827|gb|EEO20747.1| dimethyladenosine transferase [Vibrio cholerae BX 330286]
 gi|229368917|gb|ACQ59340.1| dimethyladenosine transferase [Vibrio cholerae MJ-1236]
 gi|254846379|gb|EET24793.1| dimethyladenosine transferase [Vibrio cholerae MO10]
 gi|255738575|gb|EET93963.1| dimethyladenosine transferase [Vibrio cholera CIRS 101]
 gi|262023929|gb|EEY42626.1| dimethyladenosine transferase [Vibrio cholerae RC27]
 gi|262031384|gb|EEY49992.1| dimethyladenosine transferase [Vibrio cholerae INDRE 91/1]
 gi|327483299|gb|AEA77706.1| Dimethyladenosine transferase [Vibrio cholerae LMA3894-4]
          Length = 271

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 133/263 (50%), Gaps = 7/263 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   
Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETL 240

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
           GI   +R ENL++  F  + N L
Sbjct: 241 GINPGMRPENLTLAQFVALANWL 263


>gi|144897574|emb|CAM74438.1| Ribosomal RNA adenine methylase transferase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 279

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 124/281 (44%), Positives = 169/281 (60%), Gaps = 7/281 (2%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M +    L+ +L+ + +  +K +GQ+FLLDLN+  +IA ++G+L   T IEIG GPG LT
Sbjct: 1   MADLLPPLRDVLNAHGLTARKSLGQHFLLDLNLTGRIARAAGNLATGTTIEIGPGPGGLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   AR VI IE+D +   I  +I + +P RLEII  DAL+V+        +P RI+
Sbjct: 61  RALLDNDARHVIAIERDDRAIAIQNEIMAAYPGRLEIIAADALEVEAATL--GEAPRRIV 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYNI T LL  W+        +ESLTL+FQKEV +R+ A   SP YGRLSV+T W  
Sbjct: 119 ANLPYNISTVLLLAWL---RRIDAFESLTLMFQKEVVDRLAAAPRSPDYGRLSVITQWLC 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
               +F++    F P P V STV+  IP   P+ P  +E+L+K+T  AFG+RRK LR SL
Sbjct: 176 DVRPLFNVDKRAFTPPPNVMSTVVQLIPRSQPLAPARMETLEKVTAAAFGQRRKMLRSSL 235

Query: 242 KRLGG-ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           K LG  E++L   GI    RAE L++  FC +   L   Q 
Sbjct: 236 KSLGPVEDMLAATGIAGTARAEELTVSQFCTLAEYLDRQQP 276


>gi|238918639|ref|YP_002932153.1| dimethyladenosine transferase [Edwardsiella ictaluri 93-146]
 gi|238868207|gb|ACR67918.1| dimethyladenosine transferase, putative [Edwardsiella ictaluri
           93-146]
          Length = 267

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 97/267 (36%), Positives = 139/267 (52%), Gaps = 8/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   + +K  GQNFL D  ++  I  +   L G  V+EIG G G LT+ +      K+ V
Sbjct: 2   HQGHLARKRFGQNFLTDQFVIDSIVSAINPLPGQAVVEIGPGLGALTEPVADR-MDKMTV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLL 134
           +E D+     L         +L I Q DA+ VDF +       P+R+  NLPYNI T L+
Sbjct: 61  VELDRDLAERLS-THPFISRKLTIRQQDAMTVDFSEMAREAGQPLRVFGNLPYNISTPLM 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+  S  +       +  + QKEV  R+ A  +S  YGRLSV+  +  +   + ++ P  
Sbjct: 120 FHLFSYASA---ISDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVVPVLEVPPSA 176

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S V+  IPH   P P   +  L +IT EAF +RRKT+R SL  L   + L  
Sbjct: 177 FRPAPKVDSAVVRLIPHRELPYPVSDVRVLSRITTEAFNQRRKTIRNSLGHLFSADQLSA 236

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
            GI+   RAE LS+ D+CR+ N L ++
Sbjct: 237 LGIDPARRAETLSVADYCRLANWLCEH 263


>gi|308185629|ref|YP_003929760.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Pantoea vagans C9-1]
 gi|308056139|gb|ADO08311.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Pantoea vagans C9-1]
          Length = 273

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 139/281 (49%), Gaps = 16/281 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  I+  I  +        ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHYARKRFGQNFLNDQYIINSIVSAIHPQRDEALVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +      K+ VIE D+     L +       +L I Q DA+  DF         P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARL-ETHPFLGPKLTIFQQDAMTFDFAALAQERGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   S  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ PH F P PKV S V+  +P   P      +  L +IT EAFG+RRKTLR 
Sbjct: 168 CQVIPVLEVPPHSFTPPPKVDSAVVRLVPFAEPPHPVSDVRILSRITTEAFGQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           SL  +     L +  I+  LRAEN+S+  +C++ N L ++Q
Sbjct: 228 SLSHMVAAGALEELSIDPTLRAENVSVAQYCQLANWLANHQ 268


>gi|260554070|ref|ZP_05826333.1| dimethyladenosine transferase [Acinetobacter sp. RUH2624]
 gi|260404809|gb|EEW98316.1| dimethyladenosine transferase [Acinetobacter sp. RUH2624]
          Length = 270

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/259 (34%), Positives = 137/259 (52%), Gaps = 7/259 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E
Sbjct: 13  GHKARKRFGQNFLHDQRVIAKIVRSVNPRPGDNIVEIGPGLAALTSPLIGEC-EALTVVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L +    HP RL I++ DALK DF +      P+R++ NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLPERV-PHPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV ERITA+ N+  YGRLSV+  +  + T +F++    F P
Sbjct: 131 LE---FGSQVKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNP 187

Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKVTS V   +P+          ++L ++    F +RRKTLR SLK +  E+   +AG+
Sbjct: 188 PPKVTSAVFRLVPYEQKPIVAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGV 247

Query: 256 ETNLRAENLSIEDFCRITN 274
           +   R E L++ +F  + +
Sbjct: 248 DPMARPETLTLAEFVALAD 266


>gi|117921647|ref|YP_870839.1| dimethyladenosine transferase [Shewanella sp. ANA-3]
 gi|166221704|sp|A0L064|RSMA_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|117613979|gb|ABK49433.1| dimethyladenosine transferase [Shewanella sp. ANA-3]
          Length = 268

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D N++ +I  +    +   ++EIG G G LT+ + T     + V
Sbjct: 6   HLGHTARKRFGQNFLTDDNVINRIVGAIVPDNDHVMVEIGPGLGALTEPVAT-AIDNLTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L++      ++L I Q DAL+ DF +       +++  NLPYNI T L+F
Sbjct: 65  VELDRDLVERLQNH-PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E++  + QKEV  R++A   +  YGRL+V+  +  +   + ++ PH F
Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQVVPVLEVPPHSF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P PC  +  L+++   AF  RRKTLR +LK++  +    Q 
Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+ NLR E +S+E +  + N++ D Q
Sbjct: 241 GIDPNLRPEQISVEQYVAMANMVCDKQ 267


>gi|212711197|ref|ZP_03319325.1| hypothetical protein PROVALCAL_02269 [Providencia alcalifaciens DSM
           30120]
 gi|212686365|gb|EEB45893.1| hypothetical protein PROVALCAL_02269 [Providencia alcalifaciens DSM
           30120]
          Length = 269

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 101/279 (36%), Positives = 147/279 (52%), Gaps = 16/279 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  I+  I ++     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLTDQFIIDSIVDAMHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + + +    K+ V+E D+     L  +  Q  ++L IIQ DA+ VDF +       PIR+
Sbjct: 53  EPVGSR-MDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPIRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+     T+      +  + QKEV  R+ A   S  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLF---TFTNQISDMNFMLQKEVVNRLVAGPGSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  IPH  NP P   ++ L +IT +AF +RRKT+R 
Sbjct: 168 CNVVPVLEVPPTAFAPPPKVDSAVVRLIPHKENPYPVKDIKVLSRITTQAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           SL  L     L + GI+   RAEN+S+E +C++ N L +
Sbjct: 228 SLGDLFSVEQLTELGIDPGTRAENISVEHYCKMANYLCN 266


>gi|293557287|ref|ZP_06675834.1| dimethyladenosine transferase [Enterococcus faecium E1039]
 gi|291600574|gb|EFF30879.1| dimethyladenosine transferase [Enterococcus faecium E1039]
          Length = 294

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/288 (30%), Positives = 153/288 (53%), Gaps = 20/288 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++   +   VIE+G G G LT+ L 
Sbjct: 10  PSRTKEILLKHGFSFKKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A++V+  E D +  P+L D    + N + I+  D LK D      + F+   P++++
Sbjct: 70  KH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLSTAVRETFHEELPLKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ ++      + L ++ QKEV +RI+A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESNL---VVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S ++       P       ++  ++T+ AF +RRKTL  +
Sbjct: 185 EASLAFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFRLTKAAFQQRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+   G++          L  AGI+   R E LS+++F  ++N +++N
Sbjct: 245 LQHSYGKDDQTKAWLAKSLGTAGIDPKRRGETLSLQEFAALSNAMSEN 292


>gi|312109189|ref|YP_003987505.1| dimethyladenosine transferase [Geobacillus sp. Y4.1MC1]
 gi|311214290|gb|ADP72894.1| dimethyladenosine transferase [Geobacillus sp. Y4.1MC1]
          Length = 295

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 150/296 (50%), Gaps = 23/296 (7%)

Query: 1   MTMNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M  N    +    + IL  Y    KK +GQNFL+D NIL+KI + +G       IEIG G
Sbjct: 1   MNTNKDIATPGRTREILEKYGFSFKKSLGQNFLIDTNILRKIVDVAGLSRETGAIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----F 113
            G LT+ L    A+KV+  E DQ+  PIL+D  S + N + II  D LK D  +     F
Sbjct: 61  IGALTEQLARR-AKKVVAFEIDQRLLPILEDTLSPYEN-VRIIHQDVLKADIHRVIAEEF 118

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
             ++ I ++ANLPY + T ++   ++ +        + ++ QKEV +RI+AQ  +  YG 
Sbjct: 119 TDAADIMVVANLPYYVTTPIIMKLLTDNLP---IRGIVVMLQKEVADRISAQPGTKDYGS 175

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFG 231
           LS+   + T+A  +  +   VF P P V S VI  I    P     +     ++ + +F 
Sbjct: 176 LSIAIQYYTEAEKIMTVPRTVFIPQPNVDSAVIRLIKRKQPPVDVDDESFFFQVVRASFA 235

Query: 232 KRRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +RRKT+  +L         ++   E +L + GI+   R E L++E+F  ++N L +
Sbjct: 236 QRRKTILNNLISNLPNGKARKEKIERILTENGIDPRRRGETLTMEEFAALSNALRE 291


>gi|262371641|ref|ZP_06064920.1| dimethyladenosine transferase [Acinetobacter junii SH205]
 gi|262311666|gb|EEY92751.1| dimethyladenosine transferase [Acinetobacter junii SH205]
          Length = 270

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 94/259 (36%), Positives = 138/259 (53%), Gaps = 7/259 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E
Sbjct: 13  GHQARKRFGQNFLHDQRVIAKIVRSVNPRAGDNIVEIGPGLAALTSPLIGEC-DALTVVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L      HP RL I++ DALK DF + F    P+R++ NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLPGRV-PHPERLTIVEADALKYDFTQLFQEGRPLRVVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV +RITA+ N+  YGRLSV+  +  K T +F++ P  F P
Sbjct: 131 LE---FGDKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCKPTFLFEVPPGSFNP 187

Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKVTS V    P+          ++L ++    F +RRKTLR SLK +  E+   +AG+
Sbjct: 188 PPKVTSAVFRLEPYETKPIIAKNEKALARLVGHVFTQRRKTLRNSLKGMLAEDGFEKAGV 247

Query: 256 ETNLRAENLSIEDFCRITN 274
           +   R E LS+ DF  +++
Sbjct: 248 DPMARPETLSLADFVALSD 266


>gi|90580799|ref|ZP_01236602.1| dimethyladenosine transferase [Vibrio angustum S14]
 gi|90438067|gb|EAS63255.1| dimethyladenosine transferase [Vibrio angustum S14]
          Length = 274

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 134/266 (50%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  V
Sbjct: 7   HLGHRARKRFGQNFLKDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTV 65

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++      ++L I Q DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 66  IELDRDLAERLENH-PDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           E +  + QKEV  R+ A   S  YGRL+V+  +  +   + ++ P  F
Sbjct: 125 HIFEFHK---DVEDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESF 181

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S V+   P+   P PC  L+ L ++ +E F +RRKT+R   K L     L   
Sbjct: 182 VPAPKVDSAVVRLTPYETLPYPCTSLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEAL 241

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G+    R EN+++E F  + N L  N
Sbjct: 242 GVNPGNRPENITVEQFVAMANWLDAN 267


>gi|118445093|ref|YP_879149.1| dimethyladenosine transferase [Clostridium novyi NT]
 gi|118135549|gb|ABK62593.1| dimethyladenosine transferase [Clostridium novyi NT]
          Length = 281

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 99/278 (35%), Positives = 145/278 (52%), Gaps = 13/278 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           + K ++  Y     K +GQNFL D N+L  I   S   +   VIEIG G G LT+ LL  
Sbjct: 5   TTKDVVQKYNFKFTKSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLK- 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A+KV  +E D +  PIL +     PN  E+I  DALKVDF +       ++++ANLPY 
Sbjct: 64  KAKKVCAVELDSELIPILTEELKDFPN-FELIHKDALKVDFNELIGEEKSVKVVANLPYY 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + T ++   +        ++SLT++ QKEV ERI ++ N   YG LS+L  +     ++ 
Sbjct: 123 VTTPIIARLLKE---GYKFKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTEILR 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            + P  F P PKV S +I       P       E   KI +++F  RRKTLR ++K LG 
Sbjct: 180 KVPPTCFIPQPKVDSIIIKLDRLDEPRVKVKDEELFFKIVRQSFNMRRKTLRNAIKSLGD 239

Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 E + + AGI+   R E LSIE+F ++ + + D
Sbjct: 240 VSGDHIEKVFNDAGIDPRRRGETLSIEEFGKLADSIYD 277


>gi|269137958|ref|YP_003294658.1| dimethyladenosine transferase (rRNA methylation) [Edwardsiella
           tarda EIB202]
 gi|267983618|gb|ACY83447.1| dimethyladenosine transferase (rRNA methylation) [Edwardsiella
           tarda EIB202]
 gi|304558006|gb|ADM40670.1| Dimethyladenosine transferase [Edwardsiella tarda FL6-60]
          Length = 267

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/267 (36%), Positives = 139/267 (52%), Gaps = 8/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   + +K  GQNFL D  ++  I  +   L G  V+EIG G G LT+ +      K+ V
Sbjct: 2   HQGHLARKRFGQNFLTDQFVIDSIVSAINPLPGQAVVEIGPGLGALTEPVADR-MDKMTV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLL 134
           IE D+     L         +L I Q DA+ VDF +       P+R+  NLPYNI T L+
Sbjct: 61  IELDRDLAERLS-THPFISRKLTIRQQDAMTVDFSEMAREAGQPLRVFGNLPYNISTPLM 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+  S  +       +  + QKEV  R+ A  +S  YGRLSV+  +  +   + ++ P  
Sbjct: 120 FHLFSYASA---IGDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVIPVLEVPPSA 176

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S V+  IPH   P P   +  L +IT EAF +RRKT+R SL  L   + L  
Sbjct: 177 FRPAPKVDSAVVRLIPHRELPYPVSDVRVLSRITTEAFNQRRKTVRNSLGHLFSADQLSA 236

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
            GI+   RAE LS+ D+CR+ N L ++
Sbjct: 237 LGIDPARRAETLSVADYCRLANWLCEH 263


>gi|308051068|ref|YP_003914634.1| dimethyladenosine transferase [Ferrimonas balearica DSM 9799]
 gi|307633258|gb|ADN77560.1| dimethyladenosine transferase [Ferrimonas balearica DSM 9799]
          Length = 269

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 82/266 (30%), Positives = 135/266 (50%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D++++ +I  +    +   ++EIG G G LT+ +       + V
Sbjct: 6   HLGHRARKRFGQNFLHDMSVIDRIVAAIRPDNDHIMVEIGPGLGALTEPVADQ-VEHLNV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+    +   +L I + DALK DF +       +++  NLPYNI T L+F
Sbjct: 65  VELDRDLAERLRH-QPRWGQKLTIHEGDALKFDFNQLAEPGKRMKVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           ES+  + QKEV ER+ A     +YGRLSV+  +  +   + ++ P  F
Sbjct: 124 HLFET---VDSVESMHFMLQKEVVERLCAGPGHKNYGRLSVMAQYYCQCIPVLEVPPGCF 180

Query: 196 FPSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +PH   P P   + +L+K+   AF  RRKTLR + K    ++     
Sbjct: 181 TPPPKVDSAVVRLVPHVEKPYPATNVATLEKVVATAFTMRRKTLRNNFKGQLNDDDFAAL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           GI+  LR E +S+ ++  + N +++ 
Sbjct: 241 GIDPTLRPERISLPEYVAMANYISER 266


>gi|302185943|ref|ZP_07262616.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae
           642]
          Length = 268

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNSQFAGKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|262403931|ref|ZP_06080488.1| dimethyladenosine transferase [Vibrio sp. RC586]
 gi|262349893|gb|EEY99029.1| dimethyladenosine transferase [Vibrio sp. RC586]
          Length = 272

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/270 (31%), Positives = 135/270 (50%), Gaps = 7/270 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT+R   K L     L   
Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLVEPETLEAL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283
           GI + +R ENL++  F  + N L      A
Sbjct: 241 GINSGMRPENLTLAQFVALANWLDAQHQKA 270


>gi|56552210|ref|YP_163049.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761717|ref|ZP_04759804.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|62900473|sp|Q5NMX2|RSMA_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56543784|gb|AAV89938.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241374025|gb|EER63558.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 278

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 119/265 (44%), Positives = 166/265 (62%), Gaps = 4/265 (1%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L+ +++ + +   K +GQNFLLD  +L +IA   G L   TV E+G GPG LT+ LL  
Sbjct: 8   PLRAVIARHGLSADKRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALLKA 67

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GA KV  +E+D++  P L ++S+  P++L++I  DA+++D          + I+ANLPYN
Sbjct: 68  GA-KVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAVL--GEHVHIVANLPYN 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           +GT LL  W++A TW P+W SLTL+FQKEV ERITA+  +PHYGRLSVL  WR++A + F
Sbjct: 125 VGTALLIRWLTAKTWQPWWSSLTLMFQKEVAERITAKVGTPHYGRLSVLAQWRSEAKLSF 184

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-E 247
            +    F P PKV S V+H  P   P    L +L+KIT  AF +RRK LRQSLK +    
Sbjct: 185 PVHRSAFVPPPKVMSAVVHLTPKDQPEGLSLGTLEKITAAAFNQRRKMLRQSLKNIEHMM 244

Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272
             L  AGI+   R E +S+ +F  I
Sbjct: 245 EALELAGIDATRRPETVSVAEFIAI 269


>gi|169634292|ref|YP_001708028.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter baumannii SDF]
 gi|169794673|ref|YP_001712466.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter baumannii AYE]
 gi|184159517|ref|YP_001847856.1| dimethyladenosine transferase [Acinetobacter baumannii ACICU]
 gi|213157955|ref|YP_002320753.1| dimethyladenosine transferase [Acinetobacter baumannii AB0057]
 gi|239504128|ref|ZP_04663438.1| dimethyladenosine transferase [Acinetobacter baumannii AB900]
 gi|260558120|ref|ZP_05830330.1| dimethyladenosine transferase [Acinetobacter baumannii ATCC 19606]
 gi|301345850|ref|ZP_07226591.1| dimethyladenosine transferase [Acinetobacter baumannii AB056]
 gi|301512166|ref|ZP_07237403.1| dimethyladenosine transferase [Acinetobacter baumannii AB058]
 gi|301595546|ref|ZP_07240554.1| dimethyladenosine transferase [Acinetobacter baumannii AB059]
 gi|332851556|ref|ZP_08433533.1| dimethyladenosine transferase [Acinetobacter baumannii 6013150]
 gi|332867755|ref|ZP_08437827.1| dimethyladenosine transferase [Acinetobacter baumannii 6013113]
 gi|332873490|ref|ZP_08441441.1| dimethyladenosine transferase [Acinetobacter baumannii 6014059]
 gi|169147600|emb|CAM85461.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter baumannii AYE]
 gi|169153084|emb|CAP02154.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter baumannii]
 gi|183211111|gb|ACC58509.1| Dimethyladenosine transferase (rRNA methylation) [Acinetobacter
           baumannii ACICU]
 gi|193078414|gb|ABO13399.2| S-adenosylmethionine-6-N'N'-adenosyl [Acinetobacter baumannii ATCC
           17978]
 gi|213057115|gb|ACJ42017.1| dimethyladenosine transferase [Acinetobacter baumannii AB0057]
 gi|260408393|gb|EEX01701.1| dimethyladenosine transferase [Acinetobacter baumannii ATCC 19606]
 gi|322509429|gb|ADX04883.1| dimethyladenosine transferase [Acinetobacter baumannii 1656-2]
 gi|323519450|gb|ADX93831.1| dimethyladenosine transferase [Acinetobacter baumannii TCDC-AB0715]
 gi|332729901|gb|EGJ61233.1| dimethyladenosine transferase [Acinetobacter baumannii 6013150]
 gi|332733761|gb|EGJ64913.1| dimethyladenosine transferase [Acinetobacter baumannii 6013113]
 gi|332738315|gb|EGJ69191.1| dimethyladenosine transferase [Acinetobacter baumannii 6014059]
          Length = 270

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/259 (34%), Positives = 137/259 (52%), Gaps = 7/259 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E
Sbjct: 13  GHKARKRFGQNFLHDQRVIAKIVRSVNPRTGDNIVEIGPGLAALTSPLIGEC-DALTVVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L +    HP RL I++ DALK DF +      P+R++ NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLPERV-PHPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV ERITA+ N+  YGRLSV+  +  + T +F++    F P
Sbjct: 131 LE---FGSQVKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNP 187

Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKVTS V   +P+          ++L ++    F +RRKTLR SLK +  E+   +AG+
Sbjct: 188 PPKVTSAVFRLVPYEQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGV 247

Query: 256 ETNLRAENLSIEDFCRITN 274
           +   R E L++ +F  + +
Sbjct: 248 DPMARPETLTLAEFVALAD 266


>gi|329890126|ref|ZP_08268469.1| dimethyladenosine transferase [Brevundimonas diminuta ATCC 11568]
 gi|328845427|gb|EGF94991.1| dimethyladenosine transferase [Brevundimonas diminuta ATCC 11568]
          Length = 268

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 119/278 (42%), Positives = 168/278 (60%), Gaps = 11/278 (3%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT+     SL+  L  + +  KK  GQ+FLLDLN+ +KI   +G  DG  VIE+G GPG 
Sbjct: 1   MTL----PSLRETLDAHGLSAKKSFGQHFLLDLNVTRKIVRYAGPFDGRAVIEVGPGPGG 56

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL   A KV+++EKD +F P+L ++      RL I++ DALKV   +   +  P  
Sbjct: 57  LTRALLESDAGKVVLVEKDPRFIPLLSEL-DDGSGRLTIVEADALKVKEAEL--VEGPAH 113

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +++NLPYN+GT LL  W++    P    +LTL+FQKEV ER+ AQ     YGRL+V++  
Sbjct: 114 LVSNLPYNVGTPLLIKWLTGPWTP---CALTLMFQKEVAERVVAQPGEDAYGRLAVISQA 170

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQ 239
             +A ++  +    F P PKV S V+H IP    P P  L+ L+++T  AFG+RRK LR 
Sbjct: 171 VAEARIVMHLPAAAFTPPPKVASAVVHLIPLAERPAPDRLKRLERVTAAAFGQRRKMLRS 230

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK+LGG  L   AGIE + RAE + +  F R+ + LT
Sbjct: 231 SLKQLGGAALCEAAGIEPDARAETIDVAGFLRLADALT 268


>gi|117618457|ref|YP_855484.1| dimethyladenosine transferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166221642|sp|A0KGT8|RSMA_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|117559864|gb|ABK36812.1| dimethyladenosine transferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 271

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 94/268 (35%), Positives = 138/268 (51%), Gaps = 8/268 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  ++ +I  +     G  ++EIG G   LT+ +      K+ V
Sbjct: 7   HMGHTARKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALTEPVA-SQMDKMTV 65

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLL 134
           +E D+     L++       +L +I+ DA++ DF         P+RI  NLPYNI T L+
Sbjct: 66  VELDRDLAARLREH-PTLKEKLTVIEADAMRFDFGTLMGEGKGPLRIFGNLPYNISTPLI 124

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+      +    E +  + QKEV  R+ A   S  YGRLSV+T +  +   + ++ P  
Sbjct: 125 FHLCE---FADRVEDMHFMLQKEVVLRLAAGPGSKAYGRLSVMTQYYCQVVPVLEVGPGA 181

Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S V+  IPH NP  +   +  L ++  E FG+RRKT+R S      +  L +
Sbjct: 182 FKPAPKVDSAVVRLIPHKNPTIVAKDIRCLNRVCTEGFGQRRKTIRNSFSNFITDAQLTE 241

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280
            GI+ NLR ENLS+E F  I N L D Q
Sbjct: 242 LGIDGNLRPENLSLEQFVMIANWLADQQ 269


>gi|294634975|ref|ZP_06713492.1| dimethyladenosine transferase [Edwardsiella tarda ATCC 23685]
 gi|291091574|gb|EFE24135.1| dimethyladenosine transferase [Edwardsiella tarda ATCC 23685]
          Length = 271

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 95/270 (35%), Positives = 137/270 (50%), Gaps = 8/270 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   + +K  GQNFL D  ++  I  +     G  V+EIG G G LT+ +      K+ V
Sbjct: 6   HQGHLARKRFGQNFLTDQFVIDSIVSAINPQPGQAVVEIGPGLGALTEPVADR-MDKMTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGTRLL 134
           IE D+     L         +L I Q DA+ VDF E       P+R+  NLPYNI T L+
Sbjct: 65  IELDRDLAERLS-THPFISRKLTIRQQDAMSVDFGEMAREAGQPLRVFGNLPYNISTPLM 123

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+  S  +       +  + QKEV  R+ A  +S  YGRLSV+  +  +   + ++ P  
Sbjct: 124 FHLFSYASA---IGDMHFMLQKEVVNRLVAGPDSKTYGRLSVMAQYYCQVIPVLEVPPSA 180

Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S V+  IPH         +  L +IT EAF +RRKT+R SL  L     L +
Sbjct: 181 FRPAPKVDSAVVRLIPHRELPHSVSDVRVLSRITTEAFNQRRKTIRNSLGHLFSAEQLSE 240

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDI 282
            GI+   RAE LS+ ++CR+ N L ++  +
Sbjct: 241 LGIDPARRAETLSVAEYCRLANWLCEHPPV 270


>gi|291616236|ref|YP_003518978.1| KsgA [Pantoea ananatis LMG 20103]
 gi|291151266|gb|ADD75850.1| KsgA [Pantoea ananatis LMG 20103]
 gi|327392687|dbj|BAK10109.1| Dimethyladenosine transferase KsgA [Pantoea ananatis AJ13355]
          Length = 273

 Score =  299 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 142/282 (50%), Gaps = 16/282 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  I+  I  +        ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHYARKRFGQNFLNDQYIIDSIVSAIHPQRDQAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +       + V+E D+     L+        +L I Q DA+  DF         P+R+
Sbjct: 53  EPVGERL-DSLTVVELDRDLAARLQ-THPFLGPKLTIFQQDAMTFDFAALAKEKGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +    + +  + QKEV  R+ A   S  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNRLVAGPGSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ PH F P PKV S V+  +P++ P      +  L +IT EAFG+RRKTLR 
Sbjct: 168 CQVIPVLEVPPHSFTPPPKVDSAVVRLVPYMTPPHPVKDVRILSRITTEAFGQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           SL  +     L +  I+T+LRAEN+S+  +C++ N L D+ D
Sbjct: 228 SLSHMVVAGALDELEIDTSLRAENVSVAQYCQLANWLADHLD 269


>gi|291520367|emb|CBK75588.1| dimethyladenosine transferase [Butyrivibrio fibrisolvens 16/4]
          Length = 284

 Score =  299 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 97/288 (33%), Positives = 148/288 (51%), Gaps = 15/288 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +     K +L  +    +K  GQNFL+D N+L  I +++G      V+EIG G G 
Sbjct: 1   MAYLSNPTYTKAVLEAHGFSFQKKYGQNFLIDGNVLDNIIDAAGITKDDFVLEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           +TQ L    AR+V+ +E D+   PIL D  S + N   +I  D LKVD +   +      
Sbjct: 61  MTQRLCEE-AREVVAVEIDKTLIPILDDTLSTYKNW-TVINQDILKVDIKALADEKNGGK 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T ++     +       ES+T++ QKEV +R+     S  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPIIMGLFESHVP---LESITIMVQKEVADRMQEGPGSKEYGALSLA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKT 236
             + +   ++ ++ P  F P PKV STVI    H  P   C E  L +I + +F +RRKT
Sbjct: 176 VQYYSNPEIVCEVPPSCFMPQPKVASTVITLKCHEKPPVECDEKLLFQIIRASFNQRRKT 235

Query: 237 LRQSL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L+  L       +      + +AG    +R E LS+E+F ++TNIL +
Sbjct: 236 LQNGLGNGLHYSKEQIAEAISKAGYSPTIRGEALSLEEFAKLTNILKE 283


>gi|152987663|ref|YP_001346131.1| dimethyladenosine transferase [Pseudomonas aeruginosa PA7]
 gi|150962821|gb|ABR84846.1| dimethyladenosine transferase [Pseudomonas aeruginosa PA7]
          Length = 268

 Score =  299 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 95/268 (35%), Positives = 141/268 (52%), Gaps = 7/268 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + 
Sbjct: 3   ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE DQ   P+LK      P R  + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VIELDQDLIPLLKLKFGLEP-RFSLHQGDALKFDFASLVESDEKLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +      P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLEHA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++   P   P       + L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280
           A ++  LR E L +  F R+ N L + Q
Sbjct: 238 AAVDPTLRPEQLDLAAFVRLANRLAELQ 265


>gi|22127557|ref|NP_670980.1| dimethyladenosine transferase [Yersinia pestis KIM 10]
 gi|45443419|ref|NP_994958.1| dimethyladenosine transferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108810076|ref|YP_653992.1| dimethyladenosine transferase [Yersinia pestis Antiqua]
 gi|108810531|ref|YP_646298.1| dimethyladenosine transferase [Yersinia pestis Nepal516]
 gi|145600397|ref|YP_001164473.1| dimethyladenosine transferase [Yersinia pestis Pestoides F]
 gi|150260471|ref|ZP_01917199.1| dimethyladenosine transferase [Yersinia pestis CA88-4125]
 gi|162421183|ref|YP_001605347.1| dimethyladenosine transferase [Yersinia pestis Angola]
 gi|165928081|ref|ZP_02223913.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937777|ref|ZP_02226338.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008750|ref|ZP_02229648.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212108|ref|ZP_02238143.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401583|ref|ZP_02307077.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422020|ref|ZP_02313773.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167426031|ref|ZP_02317784.1| dimethyladenosine transferase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|218927690|ref|YP_002345565.1| dimethyladenosine transferase [Yersinia pestis CO92]
 gi|229836925|ref|ZP_04457090.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis Pestoides A]
 gi|229840380|ref|ZP_04460539.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842460|ref|ZP_04462615.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900719|ref|ZP_04515843.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis Nepal516]
 gi|270487910|ref|ZP_06204984.1| dimethyladenosine transferase [Yersinia pestis KIM D27]
 gi|294502587|ref|YP_003566649.1| dimethyladenosine transferase [Yersinia pestis Z176003]
 gi|27151586|sp|Q8ZIK5|RSMA_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600905|sp|Q1C0H5|RSMA_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600906|sp|Q1CMT2|RSMA_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221716|sp|A4TQD8|RSMA_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732644|sp|A9QZZ0|RSMA_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21960661|gb|AAM87231.1|AE013971_7 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis KIM 10]
 gi|45438288|gb|AAS63835.1| dimethyladenosine transferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774179|gb|ABG16698.1| dimethyladenosine transferase [Yersinia pestis Nepal516]
 gi|108781989|gb|ABG16047.1| dimethyladenosine transferase [Yersinia pestis Antiqua]
 gi|115346301|emb|CAL19172.1| dimethyladenosine transferase [Yersinia pestis CO92]
 gi|145212093|gb|ABP41500.1| dimethyladenosine transferase [Yersinia pestis Pestoides F]
 gi|149289879|gb|EDM39956.1| dimethyladenosine transferase [Yersinia pestis CA88-4125]
 gi|162353998|gb|ABX87946.1| dimethyladenosine transferase [Yersinia pestis Angola]
 gi|165914189|gb|EDR32805.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165919942|gb|EDR37243.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992089|gb|EDR44390.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206854|gb|EDR51334.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960157|gb|EDR56178.1| dimethyladenosine transferase [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048965|gb|EDR60373.1| dimethyladenosine transferase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054954|gb|EDR64754.1| dimethyladenosine transferase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229682058|gb|EEO78150.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis Nepal516]
 gi|229690770|gb|EEO82824.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229696746|gb|EEO86793.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229705868|gb|EEO91877.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Yersinia pestis Pestoides A]
 gi|262360617|gb|ACY57338.1| dimethyladenosine transferase [Yersinia pestis D106004]
 gi|262364563|gb|ACY61120.1| dimethyladenosine transferase [Yersinia pestis D182038]
 gi|270336414|gb|EFA47191.1| dimethyladenosine transferase [Yersinia pestis KIM D27]
 gi|294353046|gb|ADE63387.1| dimethyladenosine transferase [Yersinia pestis Z176003]
 gi|320016863|gb|ADW00435.1| dimethyladenosine transferase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 272

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 144/278 (51%), Gaps = 16/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +       + VIE D+     L     Q  ++L I Q DA+KV+F +       P+R+
Sbjct: 53  EPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFSELSEQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKTYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  IPH+  P P   +  L +IT +AF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDVRMLSRITTQAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 228 SLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 265


>gi|330891196|gb|EGH23857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 268

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 89/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL       PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|172056080|ref|YP_001812540.1| dimethyladenosine transferase [Exiguobacterium sibiricum 255-15]
 gi|171988601|gb|ACB59523.1| dimethyladenosine transferase [Exiguobacterium sibiricum 255-15]
          Length = 292

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 154/291 (52%), Gaps = 20/291 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M      H  K IL+ +    KK +GQNFL+DLN+L  I  ++       V+EIG G G+
Sbjct: 1   MKDIATLHRTKEILAKHGFSFKKSLGQNFLIDLNVLGNIVGAANLTPDSGVLEIGPGIGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116
           LT+      A+KV+ +E DQ+  PIL+D  + +P+ +++I  DAL++D E   +      
Sbjct: 61  LTEQSAKQ-AKKVVALEIDQRLLPILEDSLAPYPH-VKVIHGDALELDLETIVDEEFTQQ 118

Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
             + + ++ANLPY + T ++   + A T    + +L ++ QKEV ERI AQ  +  YG L
Sbjct: 119 GITDLAVVANLPYYVTTPIIMRILEARTP---FRTLIMMIQKEVAERIGAQPGTKAYGSL 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGK 232
           S+   +  +A + F +   VF P+P V S VI       P       +   ++T+ +F +
Sbjct: 176 SIAIQYYAEAEVCFTVPKQVFIPAPNVDSAVIRLNIRKEPAVKTLDEKLFFEVTRASFAQ 235

Query: 233 RRKTLRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RRKT+  +L    G       E  LH+AGI+   R E LS+++F ++ + L
Sbjct: 236 RRKTILNNLSSHFGKAEKEAVEAALHEAGIDPRRRGETLSLQEFAQLADAL 286


>gi|221234694|ref|YP_002517130.1| dimethyladenosine transferase [Caulobacter crescentus NA1000]
 gi|220963866|gb|ACL95222.1| dimethyladenosine transferase [Caulobacter crescentus NA1000]
          Length = 281

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 112/276 (40%), Positives = 168/276 (60%), Gaps = 8/276 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+  L  + ++ +K  GQ+FLLDLN+ +KIA  +   +G TV+E+G GPG 
Sbjct: 6   MSLAD-LPPLREALERHDLMARKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGG 64

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR V+ IEKD +F P+L +++     RLE+++ DALKVD  +      P  
Sbjct: 65  LTRALLETGAR-VVAIEKDSRFLPLLAEVAEVAEGRLELVEGDALKVDAAQAA--GGPAH 121

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +++NLPYN+GT+LL NW++    P    S+TL+FQKEV +RI AQ     YGRL+V+   
Sbjct: 122 VVSNLPYNVGTQLLINWLTGPFRP---LSMTLMFQKEVADRIVAQPGDDAYGRLAVIAQT 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQ 239
             +A  + D+    F P PKV S V+  +P   P P   + +L+++T  AFG+RRK LR 
Sbjct: 179 LCEARTVMDLPAKAFTPPPKVASAVVRLVPKAEPPPAEVVAALERVTAAAFGQRRKMLRS 238

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           SLK LGG +L  +AG+  + RAE + +  F  +   
Sbjct: 239 SLKALGGADLCERAGVSPDARAEVIDLAGFLDLARA 274


>gi|312883920|ref|ZP_07743637.1| dimethyladenosine transferase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368378|gb|EFP95913.1| dimethyladenosine transferase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 268

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 7/263 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGKE-VDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++       +L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PDLGEKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVMPVLEVPPSAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+   P+ + P P   L+ L ++ +E F +RRKT+R   K L   ++L + 
Sbjct: 181 VPPPKVDSAVVRLTPYEDLPHPVADLKWLDRVCREGFNQRRKTVRNCYKGLLDTDVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
           GI  ++R ENL++E F  + N L
Sbjct: 241 GINPSMRPENLTLEQFVSMANWL 263


>gi|157368969|ref|YP_001476958.1| dimethyladenosine transferase [Serratia proteamaculans 568]
 gi|166987697|sp|A8G9P0|RSMA_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157320733|gb|ABV39830.1| dimethyladenosine transferase [Serratia proteamaculans 568]
          Length = 272

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 100/280 (35%), Positives = 146/280 (52%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNNK H             +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNKVHQ--------GHFARKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +     R + VIE D+     L +   Q  ++L I Q DA+ V+F +       P+R+
Sbjct: 53  EPVGARMDR-MTVIELDRDLAARLANH-PQLKDKLTIHQQDAMTVNFAEMAEQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S          +  + QKEV  R+ A  NS  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  +PH +NP P   +  L +IT +AF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPTSFTPAPKVDSAVVRLVPHLVNPNPVGDVRMLSRITTQAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L     L + GI+  LRAEN+S+  +C++ N L+ N
Sbjct: 228 SLGDLFTPEQLTELGIDPILRAENISVAQYCKLANWLSAN 267


>gi|289676165|ref|ZP_06497055.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae
           FF5]
          Length = 268

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|89101161|ref|ZP_01173994.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911]
 gi|89084129|gb|EAR63297.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911]
          Length = 293

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 142/285 (49%), Gaps = 20/285 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL  Y    KK +GQNFL+D NIL +I + +   +G   IEIG G G LT+ L    
Sbjct: 11  TRAILEKYGFSFKKSLGQNFLIDTNILNRIVDHAELREGSGAIEIGPGIGALTEQLAKR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           + KV+  E DQ+  PILK+  + +PN  E+I  D LK D     E+ F     + ++ANL
Sbjct: 70  SEKVVAFEIDQRLLPILKETLAPYPNA-EVIHQDVLKADVKTTIEERFAPGQDLMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   +           +  + QKEV +RI+A+  S  YG LS+   + T+A 
Sbjct: 129 PYYVTTPIIMKLLEEKLP---IRGIVCMLQKEVADRISAKPGSKDYGSLSIAVQYYTEAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241
            +  +   VF P P V S VI       P     +     ++T+ +F +RRKT+  +L  
Sbjct: 186 TVMIVPKTVFVPQPNVDSAVIRLTRREQPPVLVKDEAFFFQVTKASFAQRRKTILNNLTS 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                  K+      L  AGIE + R E LSI +F R+++ L  +
Sbjct: 246 QLHEGKQKKEAILAALETAGIEPSRRGETLSIGEFGRLSDELYPH 290


>gi|83591771|ref|YP_425523.1| dimethyladenosine transferase [Rhodospirillum rubrum ATCC 11170]
 gi|119365056|sp|Q2RXA9|RSMA_RHORT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83574685|gb|ABC21236.1| dimethyladenosine transferase [Rhodospirillum rubrum ATCC 11170]
          Length = 288

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 114/270 (42%), Positives = 166/270 (61%), Gaps = 7/270 (2%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T  +    L+ +++ + +  ++ +GQNFL DLN+  +IA + G +D  TVIEIG GPG L
Sbjct: 11  TPGDGLPPLREVIATHGLDARRSLGQNFLFDLNLTGRIARAGGEIDQGTVIEIGPGPGGL 70

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           T+ LL  GAR+VI IE+D +   +L +I++  P RLE I+ DAL +D        +P R+
Sbjct: 71  TRALLGAGARRVIAIERDSRCRGVLAEIAAVWPGRLETIEGDALDIDVAAL--GEAPRRV 128

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           IANLPYN+ T LL  W+   +    +E   L+FQKEV +R+ A+  +  YGRLSV+T W 
Sbjct: 129 IANLPYNVATPLLIGWLRHASA---FERFVLMFQKEVVDRLAARPGTKDYGRLSVITQWL 185

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQS 240
            +   +FD++P  F P PKV STV+   P   P+ P  +E+L+++T  AFG+RRK LR S
Sbjct: 186 CEVRPLFDVNPRAFTPPPKVVSTVVRIDPRPQPLAPARMETLERVTAAAFGQRRKMLRAS 245

Query: 241 LKRLGGENLL-HQAGIETNLRAENLSIEDF 269
           LK LG    L   AG++   RAE + +E F
Sbjct: 246 LKALGDAEGLCAAAGLDPTARAETIPVEGF 275


>gi|71735918|ref|YP_272932.1| dimethyladenosine transferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257483106|ref|ZP_05637147.1| dimethyladenosine transferase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|118600884|sp|Q48NT7|RSMA_PSE14 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71556471|gb|AAZ35682.1| dimethyladenosine transferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320326009|gb|EFW82067.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320332056|gb|EFW87992.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881716|gb|EGH15865.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330985796|gb|EGH83899.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011661|gb|EGH91717.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 268

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 89/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL       PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|330970842|gb|EGH70908.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 268

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|330830999|ref|YP_004393951.1| ribosomal RNA small subunit methyltransferase A [Aeromonas veronii
           B565]
 gi|328806135|gb|AEB51334.1| Ribosomal RNA small subunit methyltransferase A [Aeromonas veronii
           B565]
          Length = 264

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 93/266 (34%), Positives = 138/266 (51%), Gaps = 8/266 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ +I  +     G  ++EIG G   LT+ +      K+ V+E
Sbjct: 2   GHTARKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALTEPVAAQ-MDKMTVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFN 136
            D+     L++      ++L +I+ DA++ DF         P+RI  NLPYNI T L+F+
Sbjct: 61  LDRDLAARLREH-PTLKDKLTVIEADAMRFDFGTLMGEGKGPLRIFGNLPYNISTPLIFH 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                 +    E +  + QKEV  R+ A   S  YGRLSV+T +  +   + ++ P  F 
Sbjct: 120 LCE---FADRVEDMHFMLQKEVVLRLAAGPGSKAYGRLSVMTQYYCQVVPVLEVGPGAFK 176

Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P+PKV S V+  IPH NP  +   +  L ++  E FG+RRKT+R S      +  L + G
Sbjct: 177 PAPKVDSAVVRLIPHKNPTIVAKDIRCLNRVCTEGFGQRRKTIRNSFSNFITDAQLTELG 236

Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280
           I+ NLR ENLS+E F  I N L D Q
Sbjct: 237 IDGNLRPENLSLEQFVMIANWLADQQ 262


>gi|24375138|ref|NP_719181.1| dimethyladenosine transferase [Shewanella oneidensis MR-1]
 gi|33516936|sp|Q8EB93|RSMA_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|24349908|gb|AAN56625.1|AE015799_12 dimethyladenosine transferase [Shewanella oneidensis MR-1]
          Length = 268

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D N++ +I  +    +   ++EIG G G LT+ + T     + V
Sbjct: 6   HLGHTARKRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVAT-AIDNLTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L++      ++L I Q DAL+ DF +       +++  NLPYNI T L+F
Sbjct: 65  VELDRDLVERLQNH-PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E++  + QKEV  R++A   +  YGRL+V+  +  +   + ++ PH F
Sbjct: 124 HLFE---FAEQIETMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYFCQVVPVLEVPPHSF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P PC  +  L+++   AF  RRKTLR +LK++  +    Q 
Sbjct: 181 APPPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNNLKQVLSDEEFEQL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+ NLR E +S+E +  + N++ D Q
Sbjct: 241 GIDQNLRPEQISVEQYVAMANMVCDKQ 267


>gi|51594984|ref|YP_069175.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP
           32953]
 gi|153948384|ref|YP_001402399.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP
           31758]
 gi|170025788|ref|YP_001722293.1| dimethyladenosine transferase [Yersinia pseudotuberculosis YPIII]
 gi|186893985|ref|YP_001871097.1| dimethyladenosine transferase [Yersinia pseudotuberculosis PB1/+]
 gi|62900509|sp|Q66EQ8|RSMA_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166987698|sp|A7FMC1|RSMA_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732643|sp|B2K487|RSMA_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732645|sp|B1JKY3|RSMA_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|51588266|emb|CAH19873.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase;
           kasugamycin resistance [Yersinia pseudotuberculosis IP
           32953]
 gi|152959879|gb|ABS47340.1| dimethyladenosine transferase [Yersinia pseudotuberculosis IP
           31758]
 gi|169752322|gb|ACA69840.1| dimethyladenosine transferase [Yersinia pseudotuberculosis YPIII]
 gi|186697011|gb|ACC87640.1| dimethyladenosine transferase [Yersinia pseudotuberculosis PB1/+]
          Length = 272

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 144/278 (51%), Gaps = 16/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +       + VIE D+     L     Q  ++L I Q DA+KV+F +       P+R+
Sbjct: 53  EPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFSELSEQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  IPH+  P P   +  L +IT +AF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDVRMLSRITTQAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 228 SLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 265


>gi|329296587|ref|ZP_08253923.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Plautia stali symbiont]
          Length = 274

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 137/281 (48%), Gaps = 16/281 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  I+  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHYARKRFGQNFLNDQYIIDSIVSAIHPQKGEAMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +       + V+E D+     L+        +L I Q DA+  DF         P+R+
Sbjct: 53  EPVGERL-DALTVVELDRDLAARLQ-THPFLGPKLTIYQQDAMTFDFSALSKEQGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +    + +  + QKEV   + A   S  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTGSIKDMHFMLQKEVVNHLVACPGSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +P   P      +  L +IT EAFG+RRKTLR 
Sbjct: 168 CQVIPVLEVPPQSFTPPPKVDSAVVRLLPFTQPPYPVSDVRLLGRITTEAFGQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           SL  L     L +  I+ +LRAEN+++  +C++ N L  +Q
Sbjct: 228 SLGHLFTAGALDELNIDASLRAENVTVAQYCQLANWLGHHQ 268


>gi|298485300|ref|ZP_07003392.1| Dimethyladenosine transferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160150|gb|EFI01179.1| Dimethyladenosine transferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 268

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL       PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPHSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|240949660|ref|ZP_04753995.1| dimethyladenosine transferase [Actinobacillus minor NM305]
 gi|240295918|gb|EER46594.1| dimethyladenosine transferase [Actinobacillus minor NM305]
          Length = 289

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 97/289 (33%), Positives = 150/289 (51%), Gaps = 19/289 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  N          H     +K  GQNFL D+N++  I  +    +G  ++EIG G G 
Sbjct: 1   MSHINSK-------KHLGHTARKRFGQNFLHDMNVIHGIVSAINPRNGQYLLEIGPGLGA 53

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----I 115
           LT+ +  L   K+ V+E D+     L+       ++L II+ DAL+ +F ++F       
Sbjct: 54  LTEPVAEL-VDKLTVVELDRDLAERLRHH-PFLNHKLTIIEQDALRFNFREYFESLDLKE 111

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +  +R+  NLPYNI T L+F+           + +  + QKEV +R+ A  NS  YGRL+
Sbjct: 112 NEGVRVFGNLPYNISTPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLT 168

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKR 233
           ++  +  +   + ++ P  F P+PKV S V+  +PH   P P   +  L ++T +AF +R
Sbjct: 169 IMAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPHKQIPHPVKDVYWLNRVTTQAFNQR 228

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           RKTLR +L  L     L   GI+ N RAENLSI D+ R+ N L DN  +
Sbjct: 229 RKTLRNALSTLFSAEQLEALGIDLNARAENLSIADYARLANWLCDNPPL 277


>gi|294012542|ref|YP_003546002.1| dimethyladenosine transferase [Sphingobium japonicum UT26S]
 gi|292675872|dbj|BAI97390.1| dimethyladenosine transferase [Sphingobium japonicum UT26S]
          Length = 280

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 113/273 (41%), Positives = 164/273 (60%), Gaps = 5/273 (1%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   L+ +++ + +   K +GQNFLLD  +L +IA   G L+G    E+G GPG LT+ +
Sbjct: 8   KLPPLREVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGPLEGQPAFEVGPGPGGLTRAI 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L  GA K++ +E+D++  P L ++ +  P +L ++  DA++VD            IIANL
Sbjct: 68  LRAGA-KLVAVERDRRCLPALAELDAAFPGQLRVLSGDAMEVDAR--AEAGEGAHIIANL 124

Query: 126 PYNIGTRLLFNWISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           PYN+GT LL  W+SA+  P P+W +LTL+FQ EV ERI A+    HYGRL+VL+ WR+ A
Sbjct: 125 PYNVGTALLIGWLSAEWSPLPWWSTLTLMFQMEVAERIVAKPGGDHYGRLAVLSQWRSDA 184

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            +   +    F P PKV S V+H  P   P    L+ L+++T  AFG+RRK LRQSLK L
Sbjct: 185 RIAMKVHRSAFTPPPKVMSAVVHITPRPAPEGVQLKHLERLTATAFGQRRKMLRQSLKGL 244

Query: 245 -GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G    L   GI+   RAE +S+E+F  +  +L
Sbjct: 245 PGALEALEAVGIDPQRRAETVSVEEFVEVARVL 277


>gi|70732937|ref|YP_262708.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf-5]
 gi|118600886|sp|Q4K4X5|RSMA_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|68347236|gb|AAY94842.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf-5]
          Length = 270

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 137/267 (51%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  S  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRMLEIGPGQGALTEGLLGSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +   N   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNTLGAAPGSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +           +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAG---LIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH            L++I +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHRLLERIVREAFNQRRKTLRNTLKALLSSAEIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           AG++ +LR E L +  F R+ + L D 
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLADQ 264


>gi|66047854|ref|YP_237695.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae
           B728a]
 gi|75500351|sp|Q4ZMG5|RSMA_PSEU2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|63258561|gb|AAY39657.1| RRNA 16S rRNA dimethylase [Pseudomonas syringae pv. syringae B728a]
          Length = 268

 Score =  298 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGADPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|157374103|ref|YP_001472703.1| dimethyladenosine transferase [Shewanella sediminis HAW-EB3]
 gi|189028819|sp|A8FRV2|RSMA_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157316477|gb|ABV35575.1| dimethyladenosine transferase [Shewanella sediminis HAW-EB3]
          Length = 267

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 148/280 (52%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDGNVINRIVGAIAPDNDHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +   G  K+ V+E D+     LK+      ++L+I Q DALK DF +       +++ 
Sbjct: 53  EPVA-NGIDKLTVVELDKDLVERLKEH-PTLKHKLDIHQGDALKFDFSQLVEEGRQMKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+      +    E++  + QKEV  R++A   +  YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ PH F P+PKV S V+  +P+   P PC  ++ L+ +T  AF  RRKTLR +
Sbjct: 168 QVMPVLEVPPHSFTPAPKVDSAVVRLVPYKTKPWPCKDVDQLRHLTTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK +  +      GI+  LR E ++++ +  + N++ D +
Sbjct: 228 LKHMISDEEFAALGIDATLRPEQITVQQYVAMANLVIDKK 267


>gi|327479273|gb|AEA82583.1| dimethyladenosine transferase [Pseudomonas stutzeri DSM 4166]
          Length = 264

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 94/268 (35%), Positives = 148/268 (55%), Gaps = 7/268 (2%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y+   +K  GQNFL D  ++ +I  +  +  G  ++EIG G G LT+ LL  GA  +
Sbjct: 1   MSDYQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLDSGAH-L 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            V+E D    PIL+   ++  N   + Q DALK DF +     + +RI+ NLPYNI T L
Sbjct: 60  DVVELDLDLIPILQSRFAERSN-FALHQGDALKFDFAQLSREPASLRIVGNLPYNISTPL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+ +           +  + QKEV ER+ AQ     +GRLS++  +  +   +F++ P 
Sbjct: 119 IFHLLEHAG---LIRDMHFMLQKEVVERLAAQPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P+PKV S ++  +PH   P P      L+++ +EAF +RRKTLR +LK L     + 
Sbjct: 176 AFNPAPKVDSAIVRLVPHETLPHPARDHRQLERVVREAFNQRRKTLRNTLKGLLDGEAIE 235

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
            AG++ +LR E L +  F R+++ LT+ 
Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLSDQLTER 263


>gi|89075559|ref|ZP_01161964.1| dimethyladenosine transferase [Photobacterium sp. SKA34]
 gi|89048699|gb|EAR54271.1| dimethyladenosine transferase [Photobacterium sp. SKA34]
          Length = 274

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 134/266 (50%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  V
Sbjct: 7   HLGHRARKRFGQNFLKDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEQVGKL-VDKFTV 65

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++      ++L I Q DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 66  IELDRDLAERLENH-PDLASKLTIHQGDAMRFDFTQLIKENNKLRIFGNLPYNISTPLMF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           E +  + QKEV  R+ A   S  YGRL+V+  +  +   + ++ P  F
Sbjct: 125 HIFEFHK---DVEDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCRVMPVLEVPPESF 181

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S V+   P+   P PC  L+ L ++ +E F +RRKT+R   K L     L   
Sbjct: 182 VPAPKVDSAVVRLTPYEVLPFPCTNLKWLDRVCREGFNQRRKTIRNCYKALFTAEQLEAL 241

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G+    R EN+++E F  + N L  N
Sbjct: 242 GVNPGHRPENITVEQFVAMANWLDAN 267


>gi|125974582|ref|YP_001038492.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405]
 gi|256004056|ref|ZP_05429041.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360]
 gi|281419107|ref|ZP_06250124.1| dimethyladenosine transferase [Clostridium thermocellum JW20]
 gi|125714807|gb|ABN53299.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405]
 gi|255991979|gb|EEU02076.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360]
 gi|281407256|gb|EFB37517.1| dimethyladenosine transferase [Clostridium thermocellum JW20]
 gi|316941700|gb|ADU75734.1| dimethyladenosine transferase [Clostridium thermocellum DSM 1313]
          Length = 284

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 145/283 (51%), Gaps = 14/283 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K ++  Y +   K +GQNFL+D NI+K+I + +   +   VIEIG G G++T  L    
Sbjct: 5   TKKLIQKYNLKLTKSLGQNFLIDDNIVKRIVDVAEITEKDLVIEIGPGVGSMTVELAKR- 63

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A KV+ +E D++  P L+D   +  N ++II  D + V+  +F   S  ++++ANLPY I
Sbjct: 64  AGKVVAVEIDKRLIPALEDNLGEFSN-VDIINKDIMDVNINEFRGESGNVKVVANLPYYI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   +  +      + +  + QKEV +R+ A      YG LSV   + TK    FD
Sbjct: 123 TTPIIMKLLEENN--DNIDIMVFMVQKEVAQRMVASPGKKDYGALSVAVQYYTKPEKAFD 180

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
           + PH F P P+V STVI    +  P       +    + + AFG+RRKTL  +L      
Sbjct: 181 VPPHCFVPQPEVDSTVIKLKVNETPPVKLMDKDYFFTVVKAAFGQRRKTLVNALHNFKAL 240

Query: 247 -------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
                  + +L + GI+ N R E LSI  F  ++N+L  +  I
Sbjct: 241 GKSKEEIKEILKKLGIDENARGETLSITQFAELSNLLFRSSQI 283


>gi|332160258|ref|YP_004296835.1| dimethyladenosine transferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664488|gb|ADZ41132.1| dimethyladenosine transferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863032|emb|CBX73164.1| dimethyladenosine transferase [Yersinia enterocolitica W22703]
          Length = 272

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 147/278 (52%), Gaps = 16/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +       + VIE D+     L     Q  ++L I Q+DA+K++F +   +   P+R+
Sbjct: 53  EPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKINFSELAELAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S  +       +  + QKEV  R+ A  NS  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFSYTSA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  IPH+N P P   +  L +IT +AF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 228 SLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265


>gi|291533505|emb|CBL06618.1| dimethyladenosine transferase [Megamonas hypermegale ART12/1]
          Length = 287

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 14/283 (4%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ NK  + + IL  + I   K +GQNFL+D NI++ I +++   +   V+EIG G G L
Sbjct: 5   TIANKKVT-RYILQRFGIHMSKRLGQNFLIDANIVQGIVDAANVQENDRVLEIGPGIGTL 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           TQ L   GA +V  +E D++   +L      + N + +IQ D LKV+  +      P ++
Sbjct: 64  TQALAETGA-EVTCVELDKRLPEVLAHTLDAYDN-VRVIQGDILKVNIPEIMG-DKPFKV 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++   +           + ++ QKEV ER+ AQ     YG LSV   + 
Sbjct: 121 VANLPYYITTPIIMALLEKHLP---ITDIVVMVQKEVAERMAAQPGGKTYGALSVAVQYY 177

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQ 239
           T   +   + P  F P P+V S V++      P       +   ++ + AFG+RRKTL  
Sbjct: 178 TVPEIALYVPPRSFMPPPEVDSVVVNCKVRQTPAVELIDEKMFFRVVKAAFGQRRKTLNN 237

Query: 240 SLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +LK +G +     ++L +AGIE   R E L++E+F  I NIL 
Sbjct: 238 ALKSMGVDKNIIADVLDKAGIEATRRGETLTMEEFGAIANILA 280


>gi|289649007|ref|ZP_06480350.1| dimethyladenosine transferase [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 268

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL       PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|255527800|ref|ZP_05394651.1| dimethyladenosine transferase [Clostridium carboxidivorans P7]
 gi|255508513|gb|EET84902.1| dimethyladenosine transferase [Clostridium carboxidivorans P7]
          Length = 278

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 100/279 (35%), Positives = 146/279 (52%), Gaps = 12/279 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S K I+  Y     K +GQNFL+D ++L+ I ++S       VIEIG G G LT+ LL  
Sbjct: 5   STKDIVKKYGFKFSKSLGQNFLIDNSVLQDIVDNSNVSKDDLVIEIGPGVGTLTKELLK- 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A+KV  IE D    PIL +   +  N  E++  DALKVDF +        +++ANLPY 
Sbjct: 64  KAKKVYAIELDSDLIPILNEELKEF-NNFELVHKDALKVDFNELIGEEKSTKVVANLPYY 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + T ++   +  +     +ESLT++ QKEVGERI A+ ++  YG LS+L  +     ++ 
Sbjct: 123 VTTPIISKLLKENYK---FESLTIMIQKEVGERIAAKPSTKEYGALSILVQYYCDVEIVR 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG- 245
            +S   F P PKV S VI     L P       E   K+ + +F  RRKTL   LK LG 
Sbjct: 180 KVSCDSFVPRPKVDSIVIKLTKLLEPKVKVKSKELFFKVVRSSFNMRRKTLWNGLKSLGM 239

Query: 246 ----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                E     A I+   R E LS+E+F ++++ + + Q
Sbjct: 240 KKESLEKAFIDANIDLKRRGETLSLEEFAKLSDCIYELQ 278


>gi|194017982|ref|ZP_03056589.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061]
 gi|194010319|gb|EDW19894.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061]
          Length = 292

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 97/283 (34%), Positives = 141/283 (49%), Gaps = 20/283 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL  Y    KK +GQNFL+D NIL +I + +   D   VIEIG G G LT+ L    
Sbjct: 11  TKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAKR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A+KV   E DQ+  PIL D  S + N + II  D LK D     E+ F     + ++ANL
Sbjct: 70  AKKVTAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVGKVIEENFADCKEVMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   +  +      + + ++ QKEV +R+ A  +S  Y  LS+   + T+A 
Sbjct: 129 PYYVTTPIIMKLLEENLP---LKGIVVMLQKEVADRMAAVPSSKEYNSLSIAVQYYTEAK 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL-- 241
            +  +   VF P P V S VI       P       E   ++ + +FG+RRKTL  +L  
Sbjct: 186 TVMVVPKTVFVPQPNVDSAVIKLTVRETPAVSVENDEFFFQLIRASFGQRRKTLMNNLMN 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                   ++  E  L  A I+   R E+LSIE+F R+ N+L 
Sbjct: 246 NLPDGKQHKVIIEEALQTADIDGKRRGESLSIEEFARLANVLQ 288


>gi|163802665|ref|ZP_02196556.1| dimethyladenosine transferase [Vibrio sp. AND4]
 gi|159173553|gb|EDP58373.1| dimethyladenosine transferase [Vibrio sp. AND4]
          Length = 270

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 136/266 (51%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +   L G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFSQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYFCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+         L  L+++ +E F +RRKT+R   K L    +L + 
Sbjct: 181 VPPPKVDSAVVRLMPYDVLPHPAKDLRLLERVCREGFNQRRKTVRNCYKSLLSTEVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G+  ++R ENL+++ F  + N L DN
Sbjct: 241 GVNPSMRPENLTLQQFVAMANWLADN 266


>gi|323493620|ref|ZP_08098741.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio brasiliensis LMG 20546]
 gi|323312143|gb|EGA65286.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio brasiliensis LMG 20546]
          Length = 268

 Score =  297 bits (762), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 86/267 (32%), Positives = 134/267 (50%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +      K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGKE-VDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++      ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PDLGDKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+ N P P   L+ L ++ +E F +RRKT+R   K L     L + 
Sbjct: 181 VPPPKVDSAVVRLVPYENLPHPATSLKWLDRVCREGFNQRRKTVRNCYKALLSTETLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           G+   +R ENL++E F  + N L  N 
Sbjct: 241 GVNPGMRPENLTLEQFVAMANWLDANH 267


>gi|226325806|ref|ZP_03801324.1| hypothetical protein COPCOM_03619 [Coprococcus comes ATCC 27758]
 gi|225205930|gb|EEG88284.1| hypothetical protein COPCOM_03619 [Coprococcus comes ATCC 27758]
          Length = 294

 Score =  297 bits (762), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 152/293 (51%), Gaps = 19/293 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  IL  Y    +K  GQNFL+D ++L KI  ++       V+EIG G G +
Sbjct: 5   TLGNPQNTI-EILQKYNFNFQKKFGQNFLIDEHVLDKIIRAAEITKDDYVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    AR+V  +E D+   PIL+D   ++ N + II +D LKVD        N   P
Sbjct: 64  TQYLAC-AAREVTAVEIDRALIPILEDTLKEYDN-VSIINEDILKVDIAALAKEKNGGRP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +       ES+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---LESITVMVQKEVADRMQVGPGTKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236
            +  +  ++ ++ P+ F P P V S VI    H  P       + + ++ + +F +RRKT
Sbjct: 179 QYYAEPYIVANVPPNCFMPRPAVGSAVIRLTRHQKPPVEVMDEKLMFRLIRASFNQRRKT 238

Query: 237 LRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           L   LK  G  NL        + + G  +++R E L +E+F R+TNI+ +  +
Sbjct: 239 LANGLKNSGELNLSKEVITAAIEKLGKGSSVRGEALDLEEFARLTNIIKEEME 291


>gi|256960062|ref|ZP_05564233.1| dimethyladenosine transferase [Enterococcus faecalis Merz96]
 gi|256950558|gb|EEU67190.1| dimethyladenosine transferase [Enterococcus faecalis Merz96]
          Length = 292

 Score =  297 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 20/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  +    KK +GQNFL + NIL+KI E++G      V+E+G G G LT+ L 
Sbjct: 10  PSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A +V+  E D +  P+L D  S++ N + ++  D LK D      + F    PI+++
Sbjct: 70  MNAA-QVVAFEIDDRLIPVLADTLSRYDN-VTVVHQDVLKADLVETTNQVFQEKYPIKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +         + ++ QKEV +RI A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESSL---DVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQYFM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P P V S +I       P       +   K+T+ +F  RRKTL  +
Sbjct: 185 EASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILT 277
           L    G++          L +A I+ + R E LS+E+F R++N L 
Sbjct: 245 LTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALR 290


>gi|268590578|ref|ZP_06124799.1| dimethyladenosine transferase [Providencia rettgeri DSM 1131]
 gi|291313966|gb|EFE54419.1| dimethyladenosine transferase [Providencia rettgeri DSM 1131]
          Length = 269

 Score =  297 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 152/282 (53%), Gaps = 16/282 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  I+  I ++   L G +++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLTDQFIIDSIVDAMNPLPGQSIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + + +    K+ V+E D+     L  +  Q  ++L IIQ DA+ VDF +       P+R+
Sbjct: 53  EPVGSR-IDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+     T+      +  + QKEV  R+ A   S  +GRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLF---TFTNSISDMNFMLQKEVVNRLVAGPGSKAFGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S ++  IPH  NP P   ++ L +IT +AF +RRKT+R 
Sbjct: 168 CNVVPVLEVPPTAFTPAPKVDSAIVRLIPHRENPYPVKDIKFLSRITTQAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           SL  L     L + GI+ + RAEN+S+E +C++ N L++  +
Sbjct: 228 SLGDLFSVEELTELGIDLSTRAENISVEQYCKMANYLSNRSE 269


>gi|295108631|emb|CBL22584.1| dimethyladenosine transferase [Ruminococcus obeum A2-162]
          Length = 290

 Score =  297 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 94/296 (31%), Positives = 151/296 (51%), Gaps = 22/296 (7%)

Query: 1   MT---MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT   + N  +++  +L  Y  + +K  GQNFL+D ++L +I ++S       V+EIG G
Sbjct: 1   MTRPYLGNPKYTI-EVLQKYGFVFQKRFGQNFLIDTHVLDRIIQASEITKDDFVLEIGPG 59

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-- 115
            G +TQ L    AR+V  +E D    PILKD   +  N + +I  D LK D  K  +   
Sbjct: 60  IGTMTQYLADS-AREVTAVEIDDALIPILKDTLKEWDN-VNVIHGDILKTDIRKIADEKN 117

Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
              PI+++ANLPY I T ++     +       +S+T++ QKEV +R+     S  YG L
Sbjct: 118 QGRPIKVVANLPYYITTPIIMGLFESHVP---VDSITVMVQKEVADRMQTGPGSKDYGAL 174

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGK 232
           S+   +  K  ++ ++ P+ F P PKV S VI    H NP       + + +I + +F +
Sbjct: 175 SLAVQYYAKPEIVANVPPNCFMPRPKVGSAVIRLTRHQNPPVTAKDEKLMFRIIRASFNQ 234

Query: 233 RRKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           RRKTL   LK            E  + + G+  N+R E L++E F ++++I  D +
Sbjct: 235 RRKTLANGLKNSQELNYTKEQVEAAITECGLPLNIRGEALTLEQFAKLSDIFFDMK 290


>gi|262377470|ref|ZP_06070692.1| dimethyladenosine transferase [Acinetobacter lwoffii SH145]
 gi|262307526|gb|EEY88667.1| dimethyladenosine transferase [Acinetobacter lwoffii SH145]
          Length = 270

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/259 (36%), Positives = 138/259 (53%), Gaps = 7/259 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E
Sbjct: 13  GHQARKRFGQNFLHDQRVIAKIVRSVNPRPGQNILEIGPGLAALTSPLIGEC-DALTVLE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L      HP RL II+ DAL+ D+ + F    P+R++ NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLSGRV-PHPERLTIIEADALRYDYSQLFQEDRPLRVVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV +RITA  N+  YGRLSV+  +  K T +F++ P  F P
Sbjct: 131 LE---FGDKVQDMHFMLQKEVVDRITASPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNP 187

Query: 198 SPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKVTS V    P+   PI     ++L ++    F +RRKTLR SLK +  E    +AG+
Sbjct: 188 PPKVTSAVFRLEPYKVKPIVAKNEKALARLVSHVFTQRRKTLRNSLKGMLVEEGFEKAGV 247

Query: 256 ETNLRAENLSIEDFCRITN 274
           +   R E L++E F  +++
Sbjct: 248 DPMARPETLTLEQFVALSD 266


>gi|329925506|ref|ZP_08280380.1| dimethyladenosine transferase [Paenibacillus sp. HGF5]
 gi|328939789|gb|EGG36129.1| dimethyladenosine transferase [Paenibacillus sp. HGF5]
          Length = 294

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 145/287 (50%), Gaps = 19/287 (6%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
            +     K I+S +    KK +GQNFL+D NIL KI E++G  +    +EIG G G LT+
Sbjct: 7   ISTPRRTKEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTE 66

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPI 119
            L    A  V  +E DQ+  PILK++   + N + +   D LKVD  + F       S +
Sbjct: 67  KLAQT-AGTVTAVEIDQRLIPILKEVLEPYGN-VRVHHGDVLKVDLHELFRQDFGDVSKV 124

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            ++ANLPY + T +L   +         E++ ++ QKEV ER+ A   S  YG LS+   
Sbjct: 125 SVVANLPYYVTTPILMKLLEEKLP---LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQ 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           + ++  ++  +   VF P P V S VI       P           ++ Q +F +RRKT+
Sbjct: 182 YYSEPKLVCIVPHTVFIPQPNVESAVIRLAVREQPPVRVEDERFFFEVVQASFAQRRKTI 241

Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +LK            E LL +AGIE + R E LSIE++ R++N+L
Sbjct: 242 ANNLKSRFFPGEGRERLEQLLQEAGIEPSRRGETLSIEEYARLSNVL 288


>gi|226954480|ref|ZP_03824944.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|294651496|ref|ZP_06728809.1| dimethyladenosine transferase [Acinetobacter haemolyticus ATCC
           19194]
 gi|226834829|gb|EEH67212.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|292822646|gb|EFF81536.1| dimethyladenosine transferase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 270

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/259 (36%), Positives = 137/259 (52%), Gaps = 7/259 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E
Sbjct: 13  GHQARKRFGQNFLHDQRVIAKIVRSVNPRAGENIVEIGPGLAALTSPLIGEC-DALTVVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L      HP RL II+ DALK DF + F    P+R++ NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLPGRV-PHPERLTIIEADALKYDFTQLFQDGRPLRVVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV +RITA  N+  YGRLSV+  +  K T +F++ P  F P
Sbjct: 131 LE---FGDKVKDMHFMLQKEVVDRITAVPNTKEYGRLSVMIQYYCKPTFLFEVPPGSFNP 187

Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKVTS V    P+          ++L ++    F +RRKTLR SLK +  ++   +AG+
Sbjct: 188 PPKVTSAVFRLEPYETKPIVAKDEKALARLVSHVFTQRRKTLRNSLKGMLADDGFEKAGV 247

Query: 256 ETNLRAENLSIEDFCRITN 274
           +   R E LS+ DF  +++
Sbjct: 248 DPMARPETLSLADFVALSD 266


>gi|330963845|gb|EGH64105.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 268

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             ++   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQFQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNSQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLEQVVREAFNQRRKTLRNTLKLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|262281588|ref|ZP_06059366.1| dimethyladenosine transferase [Acinetobacter calcoaceticus RUH2202]
 gi|262256964|gb|EEY75704.1| dimethyladenosine transferase [Acinetobacter calcoaceticus RUH2202]
          Length = 270

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 91/259 (35%), Positives = 136/259 (52%), Gaps = 7/259 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ KI  S     G  V+EIG G   LT  L+      + V+E
Sbjct: 13  GHKARKRFGQNFLHDQRVIAKIVRSVNPRAGENVVEIGPGLAALTSPLIGEC-DALTVVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L +    HP RL II+ DALK DF +      P+R++ NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLPERV-PHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV +RITA+ N+  YGRLSV+  +  + T +F++    F P
Sbjct: 131 LE---FGSKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNP 187

Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKVTS V   +P+          ++L ++    F +RRKTLR SLK +  E+   +AG+
Sbjct: 188 PPKVTSAVFRLVPYEQKPIIAKDEKALARLVGHVFTQRRKTLRNSLKGMIAEDGFEKAGV 247

Query: 256 ETNLRAENLSIEDFCRITN 274
           +   R E L++  F  + +
Sbjct: 248 DPMARPETLTLTQFVALAD 266


>gi|302130722|ref|ZP_07256712.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 268

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             ++   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQFQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|318607172|emb|CBY28670.1| dimethyladenosine transferase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 272

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 147/278 (52%), Gaps = 16/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +       + VIE D+     L     Q  ++L I Q+DA+K++F +   +   P+R+
Sbjct: 53  EPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKINFSELAELAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S  +       +  + QKEV  R+ A  NS  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFSYTSA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  IPH+N P P   +  L +IT +AF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 228 SLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265


>gi|293611446|ref|ZP_06693741.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826230|gb|EFF84600.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 270

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 90/259 (34%), Positives = 136/259 (52%), Gaps = 7/259 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E
Sbjct: 13  GHKARKRFGQNFLHDQRVIAKIVRSVSPRTGDNIVEIGPGLAALTSPLIGEC-DALTVVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L +    HP RL II+ DALK DF +      P+R++ NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLPERV-PHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV +RITA+ N+  YGRLSV+  +  + T +F++    F P
Sbjct: 131 LE---FGSKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNP 187

Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKVTS V   +P+          ++L ++    F +RRKTLR SLK +  E+   +AG+
Sbjct: 188 PPKVTSAVFRLVPYDQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMIAEDGFEKAGV 247

Query: 256 ETNLRAENLSIEDFCRITN 274
           +   R E L++  F  + +
Sbjct: 248 DPMARPETLTLAQFVALAD 266


>gi|153811992|ref|ZP_01964660.1| hypothetical protein RUMOBE_02385 [Ruminococcus obeum ATCC 29174]
 gi|149831891|gb|EDM86977.1| hypothetical protein RUMOBE_02385 [Ruminococcus obeum ATCC 29174]
          Length = 290

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/296 (31%), Positives = 148/296 (50%), Gaps = 22/296 (7%)

Query: 1   MT---MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT   + N  +++  +L  Y  + +K  GQNFL+D  +L +I E+S       V+EIG G
Sbjct: 1   MTRPYLGNPKYTI-EVLQKYGFVFQKRFGQNFLIDTRVLDRIIEASEITKDDFVLEIGPG 59

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-- 115
            G +TQ L    AR+V  +E D    PIL+D   +  N + +I  D LK D  K  +   
Sbjct: 60  IGTMTQYLAD-AAREVTAVEIDDALIPILQDTLKEWDN-VSVIHGDILKTDIRKIADEKN 117

Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
              PI+++ANLPY I T ++     +       +S+T++ QKEV +R+     S  YG L
Sbjct: 118 QGRPIKVVANLPYYITTPIIMGLFESHVP---VDSITVMVQKEVADRMQTGPGSKDYGAL 174

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGK 232
           S+   +  K  ++ ++ P+ F P PKV S VI    H NP       + + +I + +F +
Sbjct: 175 SLAVQYYAKPEIVANVPPNCFMPRPKVGSAVIRLTRHQNPPVQAKDEKLMFRIIRASFNQ 234

Query: 233 RRKTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           RRKTL   LK            E  + + G+  N+R E L++E F  + +I  D +
Sbjct: 235 RRKTLANGLKNSQELQFTKEQVEQAITECGLPLNIRGEALTLEQFAALADIFVDMK 290


>gi|295689681|ref|YP_003593374.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756]
 gi|295431584|gb|ADG10756.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756]
          Length = 272

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/276 (40%), Positives = 169/276 (61%), Gaps = 8/276 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ +    L+  L  + ++ +K  GQ+FLLDLN+ +KIA  +   +G TV+E+G GPG 
Sbjct: 1   MSLAD-LPPLREALERHDLMARKSFGQHFLLDLNVTRKIARLAQIGEGDTVVEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR V+ IEKD +F P+L +++     RLE+++ DALKVD  +      P  
Sbjct: 60  LTRALLETGAR-VVAIEKDSRFLPLLSEVAEVADGRLELVEGDALKVDAAQAA--GGPAH 116

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +++NLPYN+GT+LL NW++    P    S+TL+FQKEV +RI AQ +   YGRL+V+   
Sbjct: 117 VVSNLPYNVGTQLLINWLTGPFRP---LSMTLMFQKEVADRIVAQPDDDAYGRLAVIAQT 173

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQ 239
             +A  + D+    F P PKV S V+  +P  +P P  +  +L+++T  AFG+RRK LR 
Sbjct: 174 LCEAKTVMDLPAKAFTPPPKVASAVVRLVPRQDPPPAEIVAALERVTAAAFGQRRKMLRS 233

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           SLK LGG  L  +AGI  + RAE + +  F  +   
Sbjct: 234 SLKALGGGELCEKAGISPDARAEVIDLAGFLALAKA 269


>gi|229592954|ref|YP_002875073.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25]
 gi|229364820|emb|CAY52848.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25]
          Length = 270

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 141/265 (53%), Gaps = 7/265 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            HY+   +K  GQNFL D  ++ +I  S  +     ++EIG G G LTQ LL  G  ++ 
Sbjct: 3   EHYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGG-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF       + +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNQQFAGMPN-FNLHQGDALKFDFNTLNAAPNSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ ++          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH          + L+++ +EAF +RRKTLR +LK L  +  +  
Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHKLLERVVREAFNQRRKTLRNTLKALLSQAEIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
           AG++ +LR E L +  F R+ + L 
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLA 262


>gi|148378088|ref|YP_001252629.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
           3502]
 gi|148287572|emb|CAL81637.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
           3502]
          Length = 278

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 102/283 (36%), Positives = 153/283 (54%), Gaps = 14/283 (4%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN   + K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT
Sbjct: 1   MNNM--NTKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLT 58

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A++V  IE D    PIL++   ++ N   +I  DALK+DF +       I+++
Sbjct: 59  KELLER-AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLV 116

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   ++       ++SLT++ QKEV ERI A+ N   YG L+VL  +  
Sbjct: 117 ANLPYYVTTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYC 173

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQS 240
              ++  +SP+ F P PKV S VI       P       +    + + +F  RRKTL  S
Sbjct: 174 NTKIIRKVSPNSFIPRPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNS 233

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK L       EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 234 LKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 276


>gi|28867779|ref|NP_790398.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|33516927|sp|Q88A46|RSMA_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|28851014|gb|AAO54093.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331017631|gb|EGH97687.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 268

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             ++   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQFQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|49082884|gb|AAT50842.1| PA0592 [synthetic construct]
          Length = 269

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 92/266 (34%), Positives = 140/266 (52%), Gaps = 7/266 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  +  + +G  ++EIG G G LT+ LL  GAR + 
Sbjct: 3   ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGAR-LD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE DQ   P+LK +     +R  + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +      P  E +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLEHA---PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++   P   P       + L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
           A ++  L  E L +  F R+ N L +
Sbjct: 238 AEVDPTLHPEQLDLAAFVRLANQLAE 263


>gi|315644358|ref|ZP_07897498.1| dimethyladenosine transferase [Paenibacillus vortex V453]
 gi|315280235|gb|EFU43527.1| dimethyladenosine transferase [Paenibacillus vortex V453]
          Length = 294

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/289 (32%), Positives = 147/289 (50%), Gaps = 19/289 (6%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
            +     K I+S +    KK +GQNFL+D NIL KI E++G  +    +EIG G G LT+
Sbjct: 7   ISTPRRTKEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTE 66

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPI 119
            L    A  V  IE DQ+  PIL+++   + N +++   D LKVD  + F       S +
Sbjct: 67  KLAQT-AGTVTAIEIDQRLIPILREVLEPYEN-VKVHHGDVLKVDLHELFQQDFGGVSKV 124

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            ++ANLPY + T +L   +         E++ ++ QKEV ER+ A   S  YG LS+   
Sbjct: 125 SVVANLPYYVTTPILMKLLEEKLP---LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQ 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTL 237
           + ++  ++  +   VF P P V S VI       P     +     ++ Q +F +RRKT+
Sbjct: 182 YYSEPKLVCIVPHTVFIPQPNVASAVIRLAVREEPPVSVEDEGFFFEVVQASFAQRRKTI 241

Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             +LK            E LL +AGI  + R E LSIE++ +++N+L +
Sbjct: 242 ANNLKSRFFAGEGRERLEQLLQEAGIVPSRRGETLSIEEYAKLSNVLYN 290


>gi|219870955|ref|YP_002475330.1| dimethyladenosine transferase [Haemophilus parasuis SH0165]
 gi|219691159|gb|ACL32382.1| dimethyladenosine transferase [Haemophilus parasuis SH0165]
          Length = 286

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 146/285 (51%), Gaps = 19/285 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+ N+K         H     +K  GQNFL D N++  I  +        ++EIG G G 
Sbjct: 1   MSSNSK--------KHLGHTARKRFGQNFLHDQNVIHNIVAAINPQQNQFLLEIGPGLGA 52

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----S 116
           LT+ +  L    + V+E D+     L+     H  +L +I+ DAL+ DF  +F+      
Sbjct: 53  LTEPVADL-VDHLTVVELDRDLAERLRHHPFLHQ-KLTVIEQDALRFDFRAYFDSLALNG 110

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +++  NLPYNI T L+F+           + +  + QKEV +R+ A  NS  YGRL++
Sbjct: 111 KAVKVFGNLPYNISTPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTI 167

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P+PKV S V+  +P+   P P   +  L ++T +AF +RR
Sbjct: 168 MAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPYKTLPYPVKDIYWLNRVTTQAFNQRR 227

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KTLR +L  L     L   G++ N RAENLS+ D+ R+ N L DN
Sbjct: 228 KTLRNALATLFSVEQLEALGVDLNARAENLSLADYARLANWLCDN 272


>gi|259907385|ref|YP_002647741.1| dimethyladenosine transferase [Erwinia pyrifoliae Ep1/96]
 gi|224963007|emb|CAX54490.1| Dimethyladenosine transferase [Erwinia pyrifoliae Ep1/96]
 gi|283477218|emb|CAY73125.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Erwinia pyrifoliae DSM 12163]
          Length = 275

 Score =  297 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 92/267 (34%), Positives = 138/267 (51%), Gaps = 8/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  V+EIG G G LT+ +       + V
Sbjct: 6   HQGHFARKRFGQNFLNDRYIIDSIVNAIHPQRGEAVVEIGPGLGALTEPVGERL-DSMTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134
           +E D+     L+        +L I Q DA+  DF         P+R+  NLPYNI T L+
Sbjct: 65  VELDRDLAARLQ-THPFLGPKLTIFQQDAMTFDFATLAQEKGQPLRVFGNLPYNISTPLM 123

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+  S   +    + +  + QKEV  R+ A   S  YGRL+V+  +  +   + ++ P  
Sbjct: 124 FHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYYCQVIPVLEVPPES 180

Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S V+  +P+  P      + +L +IT EAFGKRRKTLR SL  L   ++L +
Sbjct: 181 FTPAPKVDSAVVRLMPYAQPPHPVDDIRALSRITTEAFGKRRKTLRNSLGHLFTTDVLAE 240

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
             I+  LRAEN+++  +C++ N LT +
Sbjct: 241 MNIDPTLRAENITVAQYCQLANWLTAH 267


>gi|254420085|ref|ZP_05033809.1| dimethyladenosine transferase [Brevundimonas sp. BAL3]
 gi|196186262|gb|EDX81238.1| dimethyladenosine transferase [Brevundimonas sp. BAL3]
          Length = 269

 Score =  297 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 116/278 (41%), Positives = 165/278 (59%), Gaps = 10/278 (3%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT      SL+  L  + ++ KK  GQ+FLLDLN+ +KI   +G  +G  VIE+G GPG 
Sbjct: 1   MT---DLPSLRETLDAHGLLAKKSFGQHFLLDLNVTRKIVRLAGPFEGRAVIEVGPGPGG 57

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL   A  V+++EKD +F P+L ++      RL I++ DALKV       +S P  
Sbjct: 58  LTRALLESDAGPVVLVEKDPRFIPLLSEL-DDGSGRLTIVEADALKVKEADL--VSGPAH 114

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +++NLPYN+GT LL  W++    P    SLTL+FQKEV ER+ A      YGRL+V++  
Sbjct: 115 MVSNLPYNVGTALLIKWLTGPWLPH---SLTLMFQKEVAERVAAGPGDDAYGRLAVISQA 171

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQ 239
              A ++  +    F P PKV S V+H +P    P P  L+ L+++T  AFG+RRK LR 
Sbjct: 172 VCTARIVMHLPAAAFTPPPKVASAVVHLVPLDERPSPERLKKLERVTAAAFGQRRKMLRS 231

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK+LGG  L   AGIE ++RAE + +  F R+ + L 
Sbjct: 232 SLKQLGGAELCEAAGIEPDVRAETVDVAGFLRLADALA 269


>gi|315639886|ref|ZP_07895017.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952]
 gi|315484311|gb|EFU74776.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952]
          Length = 295

 Score =  297 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/290 (30%), Positives = 147/290 (50%), Gaps = 21/290 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + IL+ +    KK +GQNFL D NIL+ I  +        VIE+G G G LT+ L 
Sbjct: 10  PSRTREILAKHGFTFKKSLGQNFLTDPNILRNIVAAGDIDQDTNVIEVGPGIGALTEYLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL-----KVDFEKFFNISSPIRI 121
              A +V+  E D +  P+L D  S + N + +I  D L      V  E+F N   P+++
Sbjct: 70  -RAAHQVVAFEIDDRLLPVLADTLSPYDN-VSVIHQDILQARIDHVLQEQFTNDGRPVKV 127

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++ +++ +         + ++ QKEV +RI+A+  +  YG LS+   + 
Sbjct: 128 VANLPYYITTPIMMHFLDSKV---EIAEMIVMMQKEVADRISAKPGTKAYGSLSIAVQYY 184

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            +A++ F +   VF P P V S ++       P       ++   +T+ AF +RRKT   
Sbjct: 185 MEASVAFIVPKTVFVPQPNVDSAILKLTRRPQPAVDVINEKAFFGLTKAAFLQRRKTFWN 244

Query: 240 SLKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +L+   G++          L +A I+   R E LS+E+F R++N++  N+
Sbjct: 245 NLQSYYGKDEATKAWLQQSLKEAEIDPIRRGETLSLEEFARLSNVMEANK 294


>gi|330505265|ref|YP_004382134.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01]
 gi|328919551|gb|AEB60382.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01]
          Length = 269

 Score =  297 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 92/266 (34%), Positives = 146/266 (54%), Gaps = 7/266 (2%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y+   +K  GQNFL D  ++ +I  +  + +   ++EIG G G +T+ LL  GA ++
Sbjct: 1   MSEYQHRARKRFGQNFLHDAGVIDRILRAIRAKEDERLLEIGPGQGAITEGLLGSGA-QL 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D    PIL++    +P R  + Q DALK DF +       +R++ NLPYNI T L
Sbjct: 60  DVIELDLDLIPILQNKFGANP-RFRLNQGDALKFDFARLEAAPRSLRVVGNLPYNISTPL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+ +      P    +  + QKEV ER+ A      +GRLS++  +  +   +F++ P 
Sbjct: 119 IFHLLDNA---PLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P PKV S ++  +PH   P P      L+++ +EAF +RRKTLR +LK+L     + 
Sbjct: 176 AFNPPPKVDSAIVRLVPHETLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLPAEAIE 235

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
            AG++ +LR E L +  F R+ + L 
Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLADQLA 261


>gi|85711795|ref|ZP_01042851.1| dimethyladenosine transferase [Idiomarina baltica OS145]
 gi|85694410|gb|EAQ32352.1| dimethyladenosine transferase [Idiomarina baltica OS145]
          Length = 269

 Score =  297 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 149/267 (55%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D +I++ I ++     G  ++EIG G   LT+ +     +++ V
Sbjct: 5   HLGHRARKRFGQNFLNDEHIIESIVDAIHPQPGENLVEIGPGLAALTEPVAERC-QQLRV 63

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L +        L++I+ DA+K+DF+ F +    +R+  NLPYNI T L+F
Sbjct: 64  VELDRDLADRL-ETHPFLSQHLDVIRGDAMKIDFKAFASPEQKLRVFGNLPYNISTPLIF 122

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +    +  + E +  + QKEV +R+TA+  S  YGR++V    R +   + D+ P  F
Sbjct: 123 HLLK---FSDYVEDMHFMLQKEVVDRLTAEPGSKTYGRITVSVQQRCEVQKVLDVPPEAF 179

Query: 196 FPSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+   P+  +P P   ++ L+ +   AF +RRKT++ +LK+L  +  L   
Sbjct: 180 TPPPKVESAVVRLRPYVKSPTPVKDVQQLQSLCLTAFNQRRKTIKNNLKKLIDDTQLEAL 239

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI  + R E L++ D+CRI++ LTDNQ
Sbjct: 240 GINPSARPETLTVADYCRISDWLTDNQ 266


>gi|58038777|ref|YP_190741.1| dimethyladenosine transferase [Gluconobacter oxydans 621H]
 gi|62900455|sp|Q5FU61|RSMA_GLUOX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|58001191|gb|AAW60085.1| Putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Gluconobacter oxydans 621H]
          Length = 303

 Score =  297 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 117/271 (43%), Positives = 165/271 (60%), Gaps = 6/271 (2%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              SL+  +  + +  KK +GQ+FLLD  I  +IA   G L G +V+EIG GPG LT+ L
Sbjct: 33  SLPSLRDTIQAHGLDAKKSLGQHFLLDPGICARIAALGGDLTGRSVVEIGPGPGGLTRAL 92

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   A +V V+E D++ +P+L ++++ +P+RL +++ DALK+D        +P +IIANL
Sbjct: 93  LDTPASRVDVVEIDERAWPLLDELATYYPDRLHVVRQDALKLDAATLA--PAPRQIIANL 150

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+ T LL  W+   +    WE L+L+FQ EV ERI A   S  YGRL+VL+ W    +
Sbjct: 151 PYNVATPLLVGWLRQASQ---WERLSLMFQLEVAERICAAPGSSAYGRLAVLSQWCASCS 207

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           +   I P  F P PKV S V   IPH   P P    +++++T  AFG+RRK LR SLK +
Sbjct: 208 VALRIPPAAFSPPPKVHSAVAVIIPHAEQPSPQLFRAMEQVTAAAFGQRRKMLRSSLKSI 267

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           GGE LL QA IE   RAE LS+ +F R+  +
Sbjct: 268 GGERLLEQAEIEPTRRAETLSVAEFARLAEL 298


>gi|146281120|ref|YP_001171273.1| dimethyladenosine transferase [Pseudomonas stutzeri A1501]
 gi|145569325|gb|ABP78431.1| dimethyladenosine transferase [Pseudomonas stutzeri A1501]
          Length = 264

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/268 (35%), Positives = 148/268 (55%), Gaps = 7/268 (2%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y+   +K  GQNFL D  ++ +I  +  +  G  ++EIG G G LT+ LL  GA ++
Sbjct: 1   MSDYQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLHSGA-QL 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            V+E D    PIL+   +   N   + Q DALK DF +     + +RI+ NLPYNI T L
Sbjct: 60  DVVELDLDLIPILQAKFAGREN-FNLNQGDALKFDFSRLSQEPASLRIVGNLPYNISTPL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+ +           +  + QKEV ER+ AQ     +GRLS++  +  +   +F++ P 
Sbjct: 119 IFHLLEHAQ---LIRDMHFMLQKEVVERLAAQPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P+PKV S ++  +PH   P P      L+++ +EAF +RRKTLR +LK L     + 
Sbjct: 176 AFNPAPKVDSAIVRLVPHETLPHPARDHRQLERVVREAFNQRRKTLRNTLKGLLDAEAIE 235

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
            AG++ +LR E L +  F R+++ LT+ 
Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLSDQLTER 263


>gi|187777327|ref|ZP_02993800.1| hypothetical protein CLOSPO_00879 [Clostridium sporogenes ATCC
           15579]
 gi|187774255|gb|EDU38057.1| hypothetical protein CLOSPO_00879 [Clostridium sporogenes ATCC
           15579]
          Length = 278

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 103/283 (36%), Positives = 153/283 (54%), Gaps = 14/283 (4%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN   + K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT
Sbjct: 1   MNNM--NTKEIVNKYEFKFNKNLGQNFLVDESVLEDIIEGAEISKEDTVIEIGPGVGTLT 58

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A++V  IE D    PILK+   ++ N   +I  DALK+DF         I+++
Sbjct: 59  KELLE-KAKEVYSIELDGDLIPILKEELKEY-NNFTLIHKDALKIDFNGLMENKDSIKLV 116

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   ++       ++SLT++ QKEV ERI A+ N   YG L+VL  +  
Sbjct: 117 ANLPYYVTTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYC 173

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
              ++  +SP+ F P PKV S VI       P       +    + + +F  RRKTL  S
Sbjct: 174 DTKIIRKVSPNCFIPRPKVDSIVIKLDKLSEPRVKVKSEKLFFNVVRSSFNMRRKTLWNS 233

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK L       EN   +AGI++  R E LSIE+F ++++ + D
Sbjct: 234 LKSLNIDKENMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 276


>gi|227114236|ref|ZP_03827892.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 272

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/280 (35%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
             +     R   VIE D+     L +      ++L IIQ DA+ +DF         P+R+
Sbjct: 53  APVGERMDR-FTVIELDRDLAARL-ETHPTLKDKLTIIQQDAMTIDFAALAEQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+     T+      +  + QKEV  R+ A  NS  +GRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF +RRKTLR 
Sbjct: 168 CQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAEIPYPVSDIRVLSRITTEAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L    +L + GI+ + RAEN+++E +CR+ N L+++
Sbjct: 228 SLGNLFTPEILTELGIDVSSRAENVTVEQYCRLANWLSEH 267


>gi|167854678|ref|ZP_02477458.1| dimethyladenosine transferase [Haemophilus parasuis 29755]
 gi|167854215|gb|EDS25449.1| dimethyladenosine transferase [Haemophilus parasuis 29755]
          Length = 286

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 146/285 (51%), Gaps = 19/285 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+ N+K         H     +K  GQNFL D N++  I  +        ++EIG G G 
Sbjct: 1   MSSNSK--------KHLGHTARKRFGQNFLHDQNVIHNIVAAINPQQNQFLLEIGPGLGA 52

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----S 116
           LT+ +  L    + V+E D+     L+     H  +L +I+ DAL+ DF  +F+      
Sbjct: 53  LTEPVADL-VDHLTVVELDRDLAERLRHHPFLHQ-KLTVIEQDALRFDFRAYFDSLALNG 110

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +++  NLPYNI T L+F+           + +  + QKEV +R+ A  NS  YGRL++
Sbjct: 111 KAVKVFGNLPYNISTPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTI 167

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P+PKV S V+  +P+   P P   +  L ++T +AF +RR
Sbjct: 168 MAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPYKTLPYPVKDIYWLNRVTTQAFNQRR 227

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KTLR +L  L     L   G++ N RAENLS+ D+ R+ N L DN
Sbjct: 228 KTLRNALATLFNVEQLEALGVDLNARAENLSLADYARLANWLCDN 272


>gi|156124974|gb|ABU50801.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Acinetobacter venetianus]
          Length = 270

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/259 (36%), Positives = 137/259 (52%), Gaps = 7/259 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E
Sbjct: 13  GHQARKRFGQNFLHDQRVIAKIVRSVNPRAGENIVEIGPGLAALTSPLIGEC-DALTVVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L      HP RL I++ DALK DF + F    P+R++ NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLPGRV-PHPERLTIVEADALKYDFTQLFQEGRPLRVVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV +RITA  N+  YGRLSV+  +  K T +F++ P  F P
Sbjct: 131 LE---FGDKVKDMHFMLQKEVVDRITATPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNP 187

Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKVTS V    P+          ++L ++    F +RRKTLR SLK +  E+   +AG+
Sbjct: 188 PPKVTSAVFRLEPYETKPIVAKDEKALARLVGHVFTQRRKTLRNSLKGMLAEDGFEKAGV 247

Query: 256 ETNLRAENLSIEDFCRITN 274
           +   R E LS+ DF  +++
Sbjct: 248 DPMARPETLSLADFVALSD 266


>gi|261250207|ref|ZP_05942783.1| dimethyladenosine transferase [Vibrio orientalis CIP 102891]
 gi|260939323|gb|EEX95309.1| dimethyladenosine transferase [Vibrio orientalis CIP 102891]
          Length = 268

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 135/266 (50%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  S     G  ++EIG G G +T+ +      K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSSINPKPGQNLVEIGPGLGAITEPVGKE-VDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELGDKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYFCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L+ L ++ +E F +RRKT+R   K L    +L + 
Sbjct: 181 VPPPKVDSAVVRLVPYEEIPHPVSDLKYLDRVCREGFNQRRKTVRNCYKGLLSAEVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           GI  ++R ENL++  F  + N L  N
Sbjct: 241 GINPSMRPENLTLVQFVEMANWLAAN 266


>gi|317493320|ref|ZP_07951742.1| dimethyladenosine transferase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918713|gb|EFV40050.1| dimethyladenosine transferase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 270

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 147/282 (52%), Gaps = 16/282 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLTDQYVIDSIVSAIHPMPGQAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      K+ VIE D+     L        ++L I Q DA+ VDF +    +  P+R+
Sbjct: 53  EPVADR-MDKMTVIELDRDLAARLA-THPFISSKLNIRQQDAMTVDFGELSQELGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+     T+      +  + QKEV  R+ A  NS  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLF---TYTGAISDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  IPH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPTAFRPAPKVDSAVVRLIPHATIPHPVKDIRVLSRITTEAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           SL  L     L + GI+  LRAEN+S+E++C++ N L +   
Sbjct: 228 SLGHLFTPEQLTELGIDPALRAENISVENYCKLANWLCEKSP 269


>gi|293392900|ref|ZP_06637217.1| dimethyladenosine transferase [Serratia odorifera DSM 4582]
 gi|291424434|gb|EFE97646.1| dimethyladenosine transferase [Serratia odorifera DSM 4582]
          Length = 272

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 139/278 (50%), Gaps = 16/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLTDQFVIDSIVSAIHPQPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +     R + VIE D+     L     Q  ++L I Q DA+ V+F +       P+R+
Sbjct: 53  EPVGARMDR-MTVIELDRDLAARLASH-PQLKDKLTIHQQDAMTVNFSEMAEQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S          +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH+        +  L +IT +AF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPTAFAPPPKVDSAVVRLVPHVLMPHTVSDVRMLSRITTQAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SL  L     L + G++  LRAEN+S+  +C++ N L+
Sbjct: 228 SLGDLFTPEQLSELGVDPTLRAENISVAQYCQLANWLS 265


>gi|292489394|ref|YP_003532281.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Erwinia amylovora CFBP1430]
 gi|292898387|ref|YP_003537756.1| dimethyladenosine transferase [Erwinia amylovora ATCC 49946]
 gi|291198235|emb|CBJ45341.1| dimethyladenosine transferase [Erwinia amylovora ATCC 49946]
 gi|291554828|emb|CBA22688.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Erwinia amylovora CFBP1430]
 gi|312173559|emb|CBX81813.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 275

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/267 (34%), Positives = 139/267 (52%), Gaps = 8/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  V+EIG G G LT+ +       + V
Sbjct: 6   HQGHFARKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALTEPVGERL-DSMTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134
           +E D+     L+      P +L I Q DA+  DF         P+R+  NLPYNI T L+
Sbjct: 65  VELDRDLAARLQSHPFLGP-KLTIFQQDAMTFDFAALAQEKGQPLRVFGNLPYNISTPLM 123

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+  S   +    + +  + QKEV  R+ A   S  YGRL+V+  +  +   + ++ P  
Sbjct: 124 FHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYYCQVIPVLEVPPES 180

Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S V+  +P+  P      + +L +IT EAFGKRRKTLR SL  L   ++L +
Sbjct: 181 FTPAPKVDSAVVRLMPYAQPLHPVDDIRALSRITTEAFGKRRKTLRNSLGHLFTTDVLAE 240

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
             I+  LRAEN+++  +C++ N LT +
Sbjct: 241 MNIDPTLRAENITVAQYCQLANWLTAH 267


>gi|123440993|ref|YP_001004982.1| dimethyladenosine transferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166221715|sp|A1JJF4|RSMA_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122087954|emb|CAL10742.1| dimethyladenosine transferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 272

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 147/278 (52%), Gaps = 16/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +       + VIE D+     L     Q  ++L I Q+DA+K++F +   +   P+R+
Sbjct: 53  EPVAAR-MDHMTVIELDRDLADRLASH-PQLKDKLTIHQEDAMKINFSELAELAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S  +       +  + QKEV  R+ A  NS  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFSYTSA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  IPH+N P P   +  L +IT +AF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNTPNPVGDVRMLSRITTQAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 228 SLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 265


>gi|307294656|ref|ZP_07574498.1| dimethyladenosine transferase [Sphingobium chlorophenolicum L-1]
 gi|306879130|gb|EFN10348.1| dimethyladenosine transferase [Sphingobium chlorophenolicum L-1]
          Length = 280

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 110/275 (40%), Positives = 161/275 (58%), Gaps = 5/275 (1%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
             K   L+ +++ + +   K +GQNFLLD  +L +IA   G +      E+G GPG LT+
Sbjct: 6   GTKLPPLREVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGPIKDRPAFEVGPGPGGLTR 65

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
            +L  GA K++ +E+D +  P L ++ +  P +L +I  DA++VD            IIA
Sbjct: 66  AILRAGA-KLVAVERDHRCLPALAELDTAFPGQLRVISGDAMEVDAR--AEAGEGAHIIA 122

Query: 124 NLPYNIGTRLLFNWISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           NLPYN+GT LL  W+S +  P P+W SLTL+FQ EV ERI A+    HYGRL++L+ WR+
Sbjct: 123 NLPYNVGTALLIGWLSTNWTPLPWWSSLTLMFQMEVAERIVAKPGGDHYGRLAILSQWRS 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            A +   +    F P PKV S V+H  P   P    L+ L+++T  AFG+RRK LRQSLK
Sbjct: 183 DARIAMKVHRSAFTPPPKVMSAVVHITPKRAPEGVQLKHLERLTAAAFGQRRKMLRQSLK 242

Query: 243 RL-GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            L G  + L   GI+   RAE +S+E+F  +  ++
Sbjct: 243 GLPGALDALEAVGIDPQRRAETVSVEEFVAVARVM 277


>gi|188532871|ref|YP_001906668.1| dimethyladenosine transferase [Erwinia tasmaniensis Et1/99]
 gi|226732581|sp|B2VGP6|RSMA_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|188027913|emb|CAO95770.1| Dimethyladenosine transferase [Erwinia tasmaniensis Et1/99]
          Length = 273

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/267 (34%), Positives = 138/267 (51%), Gaps = 8/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  V+EIG G G LT+ +       + V
Sbjct: 6   HQGHFARKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALTEPVGERL-DNMTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134
           +E D+     L+        +L I Q DA+  DF         P+R+  NLPYNI T L+
Sbjct: 65  VELDRDLAARLQ-THPFLGPKLTIFQQDAMTFDFAALAQEKGQPLRVFGNLPYNISTPLM 123

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+  S   +    + +  + QKEV  R+ A   S  YGRL+V+  +  +   + ++ P  
Sbjct: 124 FHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYYCQVIPVLEVPPES 180

Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S V+  +P+  P      + +L +IT EAFGKRRKTLR SL  L   ++L +
Sbjct: 181 FTPAPKVDSAVVRLMPYAQPPHPVNDIRALSRITTEAFGKRRKTLRNSLGHLFTVDVLAE 240

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
             I+  LRAEN+++  +C++ N LT +
Sbjct: 241 MNIDPTLRAENITVAQYCQLANWLTAH 267


>gi|330955094|gb|EGH55354.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae Cit 7]
          Length = 268

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R+  NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNGQFANKPN-FNLHQGDALKFDFNTLGAEPRSLRVGGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHHVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|146309027|ref|YP_001189492.1| dimethyladenosine transferase [Pseudomonas mendocina ymp]
 gi|145577228|gb|ABP86760.1| dimethyladenosine transferase [Pseudomonas mendocina ymp]
          Length = 269

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/266 (34%), Positives = 144/266 (54%), Gaps = 7/266 (2%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y+   +K  GQNFL D  ++ +I  +  + DG  ++EIG G G +T+ LL  GA ++
Sbjct: 1   MSEYQHRARKRFGQNFLHDAGVIDRILRAIRAKDGERLLEIGPGQGAITEGLLGSGA-QL 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D    PIL+     +P R  + Q DALK DF +       +R++ NLPYNI T L
Sbjct: 60  DVIELDLDLIPILQGKFGDNP-RFRLNQGDALKFDFARLEAAPGSLRVVGNLPYNISTPL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F+ +      P    +  + QKEV ER+ A      +GRLS++  +  +   +F++ P 
Sbjct: 119 IFHLLDNA---PLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPG 175

Query: 194 VFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P PKV S ++  +PH            L+++ +EAF +RRKTLR +LK+L     + 
Sbjct: 176 AFNPPPKVDSAIVRLVPHEVLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLPAEAIE 235

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
            AG++ +LR E L +  F R+ + L 
Sbjct: 236 AAGVDGSLRPEQLDLAAFVRLADQLA 261


>gi|213967675|ref|ZP_03395822.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato T1]
 gi|301382735|ref|ZP_07231153.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063470|ref|ZP_07255011.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato K40]
 gi|213927451|gb|EEB60999.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato T1]
          Length = 268

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/267 (33%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             ++   +K  GQNFL D  +L KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQFQHRARKRFGQNFLHDAGVLDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L+++ +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|254509385|ref|ZP_05121470.1| dimethyladenosine transferase [Vibrio parahaemolyticus 16]
 gi|219547693|gb|EED24733.1| dimethyladenosine transferase [Vibrio parahaemolyticus 16]
          Length = 268

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 132/267 (49%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEYHK---DVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L  L ++ +E F +RRKT+R   K L     L   
Sbjct: 181 VPPPKVDSAVVRLVPYEELPYPATNLNWLDRVCREGFNQRRKTVRNCYKGLVDAETLESL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
            I   +R ENL+++ F  + N L  N+
Sbjct: 241 DINPGMRPENLTLKQFVDLANWLDANR 267


>gi|323495829|ref|ZP_08100897.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio sinaloensis DSM 21326]
 gi|323319045|gb|EGA71988.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Vibrio sinaloensis DSM 21326]
          Length = 268

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 132/267 (49%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPRPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEYHK---DVQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L  L ++ +E F +RRKT+R   K L     L   
Sbjct: 181 VPPPKVDSAVVRLVPYEELPYPATSLNWLDRVCREGFNQRRKTVRNCYKGLVDAETLESL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
            I   +R ENL+++ F  + N L  N+
Sbjct: 241 DINPGMRPENLTLKQFVDLANWLDANR 267


>gi|157690824|ref|YP_001485286.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032]
 gi|166987691|sp|A8F909|RSMA_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157679582|gb|ABV60726.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032]
          Length = 292

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/283 (34%), Positives = 141/283 (49%), Gaps = 20/283 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL  Y    KK +GQNFL+D NIL +I + +   D   VIEIG G G LT+ L    
Sbjct: 11  TKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAKR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A+KV   E DQ+  PIL D  S + N + II  D LK D     E+ F     + ++ANL
Sbjct: 70  AKKVTAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVGKVIEENFADCKEVMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   +  +      + + ++ QKEV +R+ A  +S  Y  LS+   + T+A 
Sbjct: 129 PYYVTTPIIMKLLEENLP---LKGIVVMLQKEVADRMAAIPSSKEYNSLSIAVQYYTEAK 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL-- 241
            +  +   VF P P V S VI       P       E   ++ + +FG+RRKTL  +L  
Sbjct: 186 TVMVVPKTVFVPQPNVDSAVIKLTVRETPAVSVENDEFFFQLIRASFGQRRKTLMNNLMN 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                   +   E  L  A I+   R E+LSIE+F R++N+L 
Sbjct: 246 NLPDGKQHKAIIEEALQTADIDGKRRGESLSIEEFARLSNVLQ 288


>gi|197301323|ref|ZP_03166408.1| hypothetical protein RUMLAC_00054 [Ruminococcus lactaris ATCC
           29176]
 gi|197299641|gb|EDY34156.1| hypothetical protein RUMLAC_00054 [Ruminococcus lactaris ATCC
           29176]
          Length = 297

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 19/292 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y  + +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 11  TLGNPQNTI-EVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDVVLEIGPGIGTM 69

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    A+KVI +E D+   PIL+D  S++ N + +I  D LKVD  K     N   P
Sbjct: 70  TQYLAC-AAKKVIAVEIDKALIPILEDTLSEYEN-VRVINHDVLKVDIAKLAEEENGGKP 127

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++             +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 128 IKVVANLPYYITTPIIMGLFENHVP---IKSITVMVQKEVADRMQVGPGTKDYGALSLAV 184

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236
            +  K  ++ ++ P+ F P PKV S VI    + NP       + + ++ + +F +RRKT
Sbjct: 185 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERYENPPVTVKDEKLMFRLIRASFNQRRKT 244

Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           L   LK            E  +   G   ++R E L++E+F ++ ++L++ +
Sbjct: 245 LANGLKNSPELDYTKEEIEAAIEALGRGASIRGEALTLEEFAKLADLLSECR 296


>gi|261403903|ref|YP_003240144.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10]
 gi|261280366|gb|ACX62337.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10]
          Length = 294

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/287 (33%), Positives = 145/287 (50%), Gaps = 19/287 (6%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
            +     K I+S +    KK +GQNFL+D NIL KI E++G  +    +EIG G G LT+
Sbjct: 7   ISTPRRTKEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTE 66

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPI 119
            L    A  V  +E DQ+  PIL+++   + N + +   D LKVD  + F       S +
Sbjct: 67  KLAQT-AGTVTAVEIDQRLIPILREVLEPYGN-VRVHHGDVLKVDLHELFRQDFADVSKV 124

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            ++ANLPY + T +L   +         E++ ++ QKEV ER+ A   S  YG LS+   
Sbjct: 125 SVVANLPYYVTTPILMKLLEEKLP---LENIVVMIQKEVAERMAAAPGSKDYGSLSIAVQ 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           + ++  ++  +   VF P P V S VI       P           ++ Q +F +RRKT+
Sbjct: 182 YYSEPKLVCIVPHTVFIPQPNVESAVIRLAVREQPPVRVEDERFFFEVVQASFAQRRKTI 241

Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +LK            E LL +AGIE + R E LSIE++ R++N+L
Sbjct: 242 ANNLKSRFFPGEGRERLEQLLQEAGIEPSRRGETLSIEEYARLSNVL 288


>gi|330812131|ref|YP_004356593.1| dimethyladenosine transferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380239|gb|AEA71589.1| putative dimethyladenosine transferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 272

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/267 (33%), Positives = 140/267 (52%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  S  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDRILRSIRAKPDDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +   N   + Q DALK DF       + +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLVPILNQQFAGRSN-FSLHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +S          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLSNAG---LIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH            L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHRMLERVVREAFNQRRKTLRNTLKLLLSSAEIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           AG++ +LR E L +  F R+ + L++ 
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADKLSEQ 264


>gi|312113661|ref|YP_004011257.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218790|gb|ADP70158.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100]
          Length = 287

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/278 (40%), Positives = 168/278 (60%), Gaps = 3/278 (1%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               L+ I+    +  +K +GQNF+LDLN+ ++IA ++G L+G TV+EIG GPG LT+ L
Sbjct: 8   SLPPLREIIKDASLSARKSLGQNFILDLNVTRRIARAAGPLNGATVLEIGPGPGGLTRAL 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L  GA   I IE+D++F P L  I+    +R  +   DA+ +D+  F   +   R++ANL
Sbjct: 68  LIEGASGAIAIERDERFRPALDQIAEASGDRFRVTFADAMGIDYPAFAAETGANRLVANL 127

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYNI T L+  W++   WPP+++ + ++ QKEV ER+ A   S HYGRL+V+  +R +A 
Sbjct: 128 PYNIATPLIVGWLTEARWPPWFDRIVVMVQKEVAERLVADVGSDHYGRLAVIAQFRARAR 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           ++F + P VF P PKV S ++  +P    P       L+++T  AFG+RRK LR SL  L
Sbjct: 188 ILFTLPPSVFTPPPKVASALVEIVPRPQAPDAVPTSWLERVTAAAFGQRRKMLRSSLASL 247

Query: 245 GGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           G +   LL  AGI+   RAE L++EDF R+   L   +
Sbjct: 248 GADTARLLADAGIDPAERAERLTVEDFIRLAQALQRQR 285


>gi|260773617|ref|ZP_05882533.1| dimethyladenosine transferase [Vibrio metschnikovii CIP 69.14]
 gi|260612756|gb|EEX37959.1| dimethyladenosine transferase [Vibrio metschnikovii CIP 69.14]
          Length = 271

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 136/263 (51%), Gaps = 7/263 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +   L G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF++    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELSSKLTIHEGDAMRFDFQQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHK---EIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPSAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+   P P   L+ L ++ +E F +RRKT+R   K L  +    Q 
Sbjct: 181 VPPPKVDSAVVRLLPYEELPHPATSLKWLDRVVREGFNQRRKTVRNCYKGLLDDETFAQL 240

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
            I++ +R ENL+++ F  + N L
Sbjct: 241 AIDSTMRPENLTLQQFVSMANWL 263


>gi|197286180|ref|YP_002152052.1| dimethyladenosine transferase [Proteus mirabilis HI4320]
 gi|227357300|ref|ZP_03841657.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Proteus mirabilis ATCC
           29906]
 gi|226732611|sp|B4F2I2|RSMA_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|194683667|emb|CAR44618.1| dimethyladenosine transferase [Proteus mirabilis HI4320]
 gi|227162563|gb|EEI47552.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 272

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 102/284 (35%), Positives = 147/284 (51%), Gaps = 16/284 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  I++ I ES     G  VIEIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLTDSYIIESIVESIYPQPGEAVIEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +      K+ V+E D+     L ++     ++L IIQ DA+ +DF +       P+R+
Sbjct: 53  EPVGER-MDKMTVVEIDRDLAARL-EVHPTLKDKLTIIQQDAMTIDFAQLAKERQQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +T + QKEV  R+ A   S  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---FADAISDMTFMLQKEVVNRLVASHGSKTYGRLSVMAQYH 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  IP+   P P   +  L +IT +AF +RRKTLR 
Sbjct: 168 CQVIPIIEVPPSSFKPAPKVDSAVVRLIPYKEKPYPVTDIAMLSRITSQAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           SL  L     +    I+   RAEN+S+E +C++ N L+  Q  A
Sbjct: 228 SLGGLLTAEDMLALDIDPTARAENISVEQYCKVANWLSSQQQHA 271


>gi|120599973|ref|YP_964547.1| dimethyladenosine transferase [Shewanella sp. W3-18-1]
 gi|146292093|ref|YP_001182517.1| dimethyladenosine transferase [Shewanella putrefaciens CN-32]
 gi|166221703|sp|A4Y435|RSMA_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221705|sp|A1RMU8|RSMA_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120560066|gb|ABM25993.1| dimethyladenosine transferase [Shewanella sp. W3-18-1]
 gi|145563783|gb|ABP74718.1| dimethyladenosine transferase [Shewanella putrefaciens CN-32]
 gi|319425389|gb|ADV53463.1| dimethyladenosine transferase [Shewanella putrefaciens 200]
          Length = 268

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDGNVINRIVGAIAPDNNHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +       + V+E D+     L        ++L I Q DAL+ DF +       +++ 
Sbjct: 53  EPVAM-AVDNLTVVELDRDLVERLHKH-PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+      +    E++  + QKEV  R++A      YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYFC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ PH F P+PKV S V+  +P+   P PC  +  L+++   AF  RRKTLR +
Sbjct: 168 QVVPVLEVPPHSFTPAPKVDSAVVRLLPYAEKPFPCKDVNVLRQLCTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK +  +    Q GI+ + R E +S+E +  + N++ D +
Sbjct: 228 LKHMLSDAEFEQLGIDQSQRPEQISVEQYVAMANMICDRK 267


>gi|291549844|emb|CBL26106.1| dimethyladenosine transferase [Ruminococcus torques L2-14]
          Length = 304

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 19/292 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y  + +K  GQNFL+D ++L KI  ++       V+EIG G G +
Sbjct: 19  TLGNPQNTI-EVLQKYNFVFQKKFGQNFLIDTHVLDKIIAAAEITKDDFVLEIGPGIGTM 77

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    ARKV+ +E D+   PIL+D  S + N   +I +D LKVD  K     N   P
Sbjct: 78  TQYLAC-AARKVVAVEIDKALIPILEDTLSDYDNA-RVINNDVLKVDIAKLAEEENGGKP 135

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++             +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 136 IKVVANLPYYITTPIIMGLFENHVP---IKSITVMVQKEVADRMQVGPGTKDYGALSLAV 192

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236
            +  K  ++ ++ P+ F P PKV S VI    +  P       + + +I + +F +RRKT
Sbjct: 193 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERYEEPPVKVKDEKLMFRIIRASFNQRRKT 252

Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           L   LK            E  +   G   ++R E L++E+F ++ + L D +
Sbjct: 253 LANGLKNSAELDYTKEEIEAAIEALGRGASIRGEALTLEEFAKLADFLYDCR 304


>gi|239628929|ref|ZP_04671960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519075|gb|EEQ58941.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 288

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 146/290 (50%), Gaps = 19/290 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N  H++  I+  Y+   +K  GQNFL+D ++L KI  ++G      V+EIG G G +T
Sbjct: 4   LGNPKHTI-EIIQKYQFAFQKKFGQNFLIDTHVLDKIISAAGITKEDCVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    A +V+ +E D    PIL +    + N + +I +D LK+D  K    +N   PI
Sbjct: 63  QYLAEH-AGRVVAVEIDTNLLPILDETLKGYDN-VTVINNDILKLDINKLVDEYNGGRPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++      D      +++T++ QKEV +R+     S  YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFEGDVP---IDNVTVMVQKEVADRMQVGPGSKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           +  +  ++ ++ P+ F P P V S VI    +  P       + + K+ + +F +RRKTL
Sbjct: 178 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRYKEPPVKVEDPKLMFKLVRASFNQRRKTL 237

Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +  L                +    +  ++R E L++E F R++N  T+N
Sbjct: 238 QNGLNNSPDIPYTKEQIVEAIESLQVSPSVRGEALTLEQFARLSNYFTEN 287


>gi|149377956|ref|ZP_01895682.1| dimethyladenosine transferase [Marinobacter algicola DG893]
 gi|149357730|gb|EDM46226.1| dimethyladenosine transferase [Marinobacter algicola DG893]
          Length = 276

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 145/269 (53%), Gaps = 8/269 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           S +    +K  GQNFL D  ++++I  +        ++EIG G G LT+ +L + +  + 
Sbjct: 3   SKHGHQARKRFGQNFLHDPGVIERIIRAIHPRPDDALVEIGPGLGALTEEMLAVNSN-LQ 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   P+L+     +PN   I + DALK DF +      P+RII NLPYNI T L+
Sbjct: 62  VVELDRDLIPVLRTKFFNYPN-FRIHEADALKFDFGELV-ADKPLRIIGNLPYNISTPLI 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +         + +  + QKEV +R+ A     +YGRL ++T +  +   +F++ P  
Sbjct: 120 FHLLG---HSGVVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCRVQPLFEVGPGA 176

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S ++  +PH   P P    + L+ + + AF  RRKTLR++L  +     L+ 
Sbjct: 177 FRPAPKVDSAIVRLVPHKTLPHPAKNYKLLQAVVRTAFSARRKTLRKALAGMVSVEQLNS 236

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQD 281
            GI   LR ENL + ++  I ++L D++ 
Sbjct: 237 IGINDGLRPENLGLAEYVAIADLLADSRP 265


>gi|295098565|emb|CBK87655.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 273

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M N+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MTNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DELTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   L  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHKTMPYPVKDLRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L   ++L + GI+  +RAEN+S+E +C++ N ++DN
Sbjct: 228 SLGNLFTVDVLAELGIDPAMRAENISVEQYCKLANYISDN 267


>gi|170761464|ref|YP_001785410.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|259494246|sp|B1KRY8|RSMA_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|169408453|gb|ACA56864.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 275

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 98/276 (35%), Positives = 147/276 (53%), Gaps = 12/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I++ Y+    K +GQNFL+D ++L+ I + +      TVIEIG G G LT+ LL   
Sbjct: 3   TKEIVNKYEFKFNKNLGQNFLVDESVLEDIIKGAEISKEDTVIEIGPGVGTLTKELLER- 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V  IE D    PIL++   ++ N   +I  DALK+DF         I+++ANLPY +
Sbjct: 62  AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNGLMENKDSIKLVANLPYYV 120

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   +        ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  
Sbjct: 121 TTPIISRLLKEKC---DFKSLTIMIQKEVAERIDAEPNCKEYGSLTVLVQYYCNTEIIRK 177

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
           +SP+ F P PKV S VI       P       +    + + +F  RRKTL  SLK L   
Sbjct: 178 VSPNCFIPRPKVDSIVIKLDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNID 237

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273


>gi|32034722|ref|ZP_00134853.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207883|ref|YP_001053108.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae L20]
 gi|303249761|ref|ZP_07335965.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303252642|ref|ZP_07338805.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307245229|ref|ZP_07527320.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247401|ref|ZP_07529448.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249621|ref|ZP_07531607.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251949|ref|ZP_07533850.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254176|ref|ZP_07536021.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256444|ref|ZP_07538226.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258640|ref|ZP_07540375.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260874|ref|ZP_07542560.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166221641|sp|A3MZB7|RSMA_ACTP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|126096675|gb|ABN73503.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302648610|gb|EFL78803.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651328|gb|EFL81480.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306853873|gb|EFM86087.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856098|gb|EFM88254.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858319|gb|EFM90389.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306860641|gb|EFM92653.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862876|gb|EFM94825.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865074|gb|EFM96975.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867297|gb|EFM99150.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869441|gb|EFN01232.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 289

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 91/272 (33%), Positives = 141/272 (51%), Gaps = 12/272 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D+N++  I  +    +G  ++EIG G G LT+ +      K+ 
Sbjct: 8   KHLGHTARKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAEQ-VDKLT 66

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSPIRIIANLPYNI 129
           V+E D+     L+       ++L II+ DAL+ +F ++F          +R+  NLPYNI
Sbjct: 67  VVELDRDLAERLRHH-PFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNI 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + +
Sbjct: 126 STPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLE 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P+PKV S V+  +PH         +  L ++T +AF +RRKTLR +L  L   
Sbjct: 183 VPPTAFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSP 242

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             L    I+ N RAENLSI D+ R+ N L DN
Sbjct: 243 EQLEALNIDLNARAENLSIADYARLANWLYDN 274


>gi|183597821|ref|ZP_02959314.1| hypothetical protein PROSTU_01151 [Providencia stuartii ATCC 25827]
 gi|188022577|gb|EDU60617.1| hypothetical protein PROSTU_01151 [Providencia stuartii ATCC 25827]
          Length = 269

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 101/279 (36%), Positives = 147/279 (52%), Gaps = 16/279 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  I+  I ++     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLTDQFIIDSIVDAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + + +    K+ V+E D+     L  +  Q  ++L IIQ DA+ VDF +       P+R+
Sbjct: 53  EPVGSR-MDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+     T+      +  + QKEV  R+ A   S  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLF---TFTNSIADMNFMLQKEVVNRLVAGPGSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  IPH  NP P   ++ L +IT +AF +RRKTLR 
Sbjct: 168 CQVVPVLEVPPTAFAPPPKVDSAVVRLIPHRENPYPLRDIKMLSRITTQAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           SL  L     L + GI+   RAEN+S+E +C++ N L  
Sbjct: 228 SLGDLLNVEQLTELGIDPGTRAENISVEAYCKMANYLAS 266


>gi|157960690|ref|YP_001500724.1| dimethyladenosine transferase [Shewanella pealeana ATCC 700345]
 gi|189028818|sp|A8H0V2|RSMA_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157845690|gb|ABV86189.1| dimethyladenosine transferase [Shewanella pealeana ATCC 700345]
          Length = 267

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 145/280 (51%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D N++ +I  +    +   ++EIG G   LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +   G  K+IV+E D+     LK+      ++LEI Q DALK DF +       +++ 
Sbjct: 53  EPVA-SGIDKLIVVELDKDLVERLKEH-PVLKDKLEIHQGDALKFDFNQLVREDKQMKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+           E++  + QKEV  R++A   +  YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFEFAQH---IENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ P  F P PKV S V+  +P+   P PC  ++ L+ +T  AF  RRKTLR +
Sbjct: 168 QVMPVLEVPPGCFTPPPKVDSAVVRLVPYKVKPWPCKDVDLLRNLTTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK+L  +      GI+  LR E +S+E +  + N + D +
Sbjct: 228 LKQLLSDEDFAVLGIDATLRPEQISVEQYVAMANHVFDRK 267


>gi|296116660|ref|ZP_06835270.1| dimethyladenosine transferase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976872|gb|EFG83640.1| dimethyladenosine transferase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 285

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 115/278 (41%), Positives = 170/278 (61%), Gaps = 6/278 (2%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           ++    SL+ +++ + +  +K +GQ+FLLD  I  +IA  +G LD + V+E+G GPG LT
Sbjct: 8   LSTPHESLRDVIARHGLDARKSLGQHFLLDPGITARIASMAGRLDDVNVVEVGPGPGGLT 67

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A  V V+E D +   I+ ++++ HP RL +++DDA++ D        +P +I+
Sbjct: 68  RALLDTPATSVSVVEVDARAIVIMNELAASHPGRLHVVEDDAMRRDLATL--CPAPRQIV 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+GT LL  W+   T    W  LTL+FQ EV ERI A  +S HYGRL+VL+ W  
Sbjct: 126 ANLPYNVGTPLLVGWLRQAT---EWARLTLMFQLEVAERICAPPDSDHYGRLAVLSQWVA 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           +  ++  I P  F P PKV S V++ IPH   P P    +++++T  AFG+RRK LR +L
Sbjct: 183 RCGIVMTIPPGAFSPPPKVQSAVVNLIPHTKQPAPALFRAMEQVTAAAFGQRRKMLRGAL 242

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           + +GGE LL  AGI  N RAE L I DF R+ +   + 
Sbjct: 243 RGIGGEALLEAAGIAGNRRAETLDIADFDRLAHAHLER 280


>gi|310765114|gb|ADP10064.1| dimethyladenosine transferase [Erwinia sp. Ejp617]
          Length = 275

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 94/267 (35%), Positives = 136/267 (50%), Gaps = 8/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  V+EIG G G LT+ +       + V
Sbjct: 6   HQGHFARKRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALTEPVGERL-DSMTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134
           +E D+     L+        +L I Q DA+  DF         P+R+  NLPYNI T L+
Sbjct: 65  VELDRDLAARLQ-THPFLGPKLTIFQQDAMTFDFAALAQEKGQPLRVFGNLPYNISTPLM 123

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+  S   +    + +  + QKEV  R+ A   S  YGRL+V+  +  +   + ++ P  
Sbjct: 124 FHLFS---YVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYYCQVIPVLEVPPES 180

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S V+  +P+   P P      L +IT EAFGKRRKTLR SL  L   + L +
Sbjct: 181 FTPAPKVDSAVVRLMPYARLPHPVDDIRVLSRITTEAFGKRRKTLRNSLGHLFSVDALTE 240

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
             I+  LRAEN+S+  +C++ N LT +
Sbjct: 241 MNIDPTLRAENISVAQYCQLANWLTAH 267


>gi|226327128|ref|ZP_03802646.1| hypothetical protein PROPEN_00993 [Proteus penneri ATCC 35198]
 gi|225204346|gb|EEG86700.1| hypothetical protein PROPEN_00993 [Proteus penneri ATCC 35198]
          Length = 272

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 147/282 (52%), Gaps = 16/282 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  I++ I ES     G  ++EIG G G +T
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLTDSYIIESIVESIYPQPGQAIVEIGPGLGAIT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +      K+ V+E D+     L ++     ++L IIQ DA+ +DF +       P+R+
Sbjct: 53  EPVGAR-MDKMTVVEIDRDLAARL-EVHPTLKDKLTIIQQDAMTIDFAQLAKERQQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +T + QKEV  R+ A   S  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---FADAISDMTFMLQKEVVNRLVAGHGSKTYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  IP+   P P   +  L +IT +AF +RRKTLR 
Sbjct: 168 CQIIPVLEVPPTSFKPAPKVDSAVVRLIPYKEKPYPVTDIAMLSRITAQAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           SL  L     +    I+   RAEN+S+E +C++ N L+  QD
Sbjct: 228 SLGGLLTAEDMIALDIDPTARAENISVEQYCKVANWLSQKQD 269


>gi|261338954|ref|ZP_05966812.1| hypothetical protein ENTCAN_05155 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318781|gb|EFC57719.1| dimethyladenosine transferase [Enterobacter cancerogenus ATCC
           35316]
          Length = 273

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M N+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MTNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+ +DF +    +  P+R+
Sbjct: 53  EPVGERL-DELTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMDFGELSTKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYF 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   L  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPTAFTPPPKVDSAVVRLVPHKTMPYPVKELRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L   ++L + GI+  +RAEN+S+E +C++ N ++DN
Sbjct: 228 SLGNLFTVDVLAELGIDPTMRAENISVEQYCKLANYISDN 267


>gi|307546072|ref|YP_003898551.1| dimethyladenosine transferase [Halomonas elongata DSM 2581]
 gi|307218096|emb|CBV43366.1| dimethyladenosine transferase [Halomonas elongata DSM 2581]
          Length = 268

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/262 (33%), Positives = 130/262 (49%), Gaps = 6/262 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  I+ ++  + G   G  ++E+G G G LT+ LL      + VIE
Sbjct: 7   GHRARKRFGQNFLRDPGIISRLVRAIGPRPGQRLVEVGPGQGALTEPLLEAADGHLEVIE 66

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+   P L+      P    I + DALK DF +       +R++ NLPYNI T L+ + 
Sbjct: 67  LDRDLIPGLRVQFFDKPG-FVIHEGDALKFDFRELRGDGPALRVVGNLPYNISTPLISHL 125

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++A         +  + QKEV ER+ A+      GRLSVL  +  +   +F + P  F P
Sbjct: 126 LAAGDA---VSDMHFMLQKEVVERLAAEPGGTERGRLSVLAQYHCRVESLFTVPPEAFVP 182

Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++   PH  P    L+   + ++ +EAF +RRKTLR +LK       L    I
Sbjct: 183 RPKVESAIVRLTPHETPPHRALDESLMFEVVREAFAQRRKTLRNNLKSRLSGEALSALDI 242

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +   R + LS+ +F RI + L 
Sbjct: 243 DPGRRPQTLSVAEFVRIADHLA 264


>gi|299768749|ref|YP_003730775.1| dimethyladenosine transferase [Acinetobacter sp. DR1]
 gi|298698837|gb|ADI89402.1| dimethyladenosine transferase [Acinetobacter sp. DR1]
          Length = 270

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 91/259 (35%), Positives = 135/259 (52%), Gaps = 7/259 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ KI  S     G  V+EIG G   LT  L+      + V+E
Sbjct: 13  GHKARKRFGQNFLHDQRVIAKIVRSVNPRAGENVVEIGPGLAALTSPLIGEC-DALTVVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L +    HP RL II+ DALK DF +      P+R++ NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLPERV-PHPERLTIIEADALKYDFNELVKDGRPLRVVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV ERITA+ N+  YGRLSV+  +  + T +F++    F P
Sbjct: 131 LE---FGSKVKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNP 187

Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKVTS V   +P+          ++L ++    F +RRKTLR SLK +  ++   +AG+
Sbjct: 188 PPKVTSAVFRLVPYEQKPIVAKDEKALARLVAHVFTQRRKTLRNSLKGMIADDGFEKAGV 247

Query: 256 ETNLRAENLSIEDFCRITN 274
               R E L++  F  + +
Sbjct: 248 NPMARPETLTLAQFVALAD 266


>gi|330961062|gb|EGH61322.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 268

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 89/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKSEERLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNSQFAGKPN-FSLHQGDALKFDFNSLGAEPHSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+        +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMATGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH   P P      L+++ +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPHETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|237803359|ref|ZP_04590944.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025340|gb|EGI05396.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 268

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 140/267 (52%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKSEERLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   P L    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPTLNSQFAGKPN-FSLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH            L+++ +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPHETLPHQAKDHRVLERVVREAFNQRRKTLRNTLKLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|153940692|ref|YP_001389445.1| dimethyladenosine transferase [Clostridium botulinum F str.
           Langeland]
 gi|259494245|sp|A7G9I5|RSMA_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|152936588|gb|ABS42086.1| dimethyladenosine transferase [Clostridium botulinum F str.
           Langeland]
 gi|295317550|gb|ADF97927.1| dimethyladenosine transferase [Clostridium botulinum F str. 230613]
          Length = 275

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 149/276 (53%), Gaps = 12/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   
Sbjct: 3   TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLER- 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V  IE D    PIL++   ++ N   +I  DALK+DF +       I+++ANLPY +
Sbjct: 62  AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKESIKLVANLPYYV 120

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   ++       ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  
Sbjct: 121 TTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRK 177

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
           +SP+ F P PKV S VI       P       +    + + +F  RRKTL  SLK L   
Sbjct: 178 VSPNSFIPRPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273


>gi|153931501|ref|YP_001382487.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
           19397]
 gi|153937047|ref|YP_001386039.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall]
 gi|259494241|sp|A7FQA9|RSMA_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|152927545|gb|ABS33045.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
           19397]
 gi|152932961|gb|ABS38460.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall]
 gi|322804353|emb|CBZ01903.1| dimethyladenosine transferase [Clostridium botulinum H04402 065]
          Length = 275

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 149/276 (53%), Gaps = 12/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   
Sbjct: 3   TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLER- 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V  IE D    PIL++   ++ N   +I  DALK+DF +       I+++ANLPY +
Sbjct: 62  AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYV 120

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   ++       ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  
Sbjct: 121 TTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRK 177

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
           +SP+ F P PKV S VI       P       +    + + +F  RRKTL  SLK L   
Sbjct: 178 VSPNSFIPRPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273


>gi|103486963|ref|YP_616524.1| dimethyladenosine transferase [Sphingopyxis alaskensis RB2256]
 gi|118600899|sp|Q1GT31|RSMA_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|98977040|gb|ABF53191.1| dimethyladenosine transferase [Sphingopyxis alaskensis RB2256]
          Length = 271

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 110/270 (40%), Positives = 153/270 (56%), Gaps = 3/270 (1%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+  +  + +   K +GQNFL D  +L +IA   G LDG TV E+G GPG LT+ LL 
Sbjct: 2   PPLRETVRVHGLSASKALGQNFLFDEQLLDRIAAIPGDLDGATVFEVGPGPGGLTRALLR 61

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GAR VI +E+D++  P+L D++   P +L +I DDA+ VD +       P  I+ANLPY
Sbjct: 62  TGAR-VIAVERDERCLPLLADLAEAFPGQLTVIADDAMAVDVDALTG-GDPYHIVANLPY 119

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+GT L   W+    WPP W SLTL+FQ EV ERI A   +  YGRL+VL  WR +A + 
Sbjct: 120 NVGTALFTRWLEPAAWPPRWLSLTLMFQLEVAERIVAPVGTSAYGRLAVLAQWRARARIA 179

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GG 246
             +    F P PKV S ++   P   P       L ++T++ FG+RRK LRQSLK + G 
Sbjct: 180 MKVHRSAFTPPPKVMSAIVQLTPADQPPGVDPRILSRLTEKGFGQRRKMLRQSLKGIDGA 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                  GI+   RAE +S+ ++  +   L
Sbjct: 240 VAAAEALGIDPTRRAETVSVAEWVALARAL 269


>gi|325569335|ref|ZP_08145491.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325157335|gb|EGC69496.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 295

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 150/290 (51%), Gaps = 21/290 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL+ +    KK +GQNFL + NIL+KI E++G  +   VIE+G G G LT+ L 
Sbjct: 10  PSRTKEILAKHGFTFKKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRI 121
              A++V+  E D +  P+L D    + N ++II  D L+ D       +F + ++ +++
Sbjct: 70  KQ-AKQVLAFEIDDRLIPVLADTMQPYAN-VKIIHQDVLQADLSTTIRSEFSDTAASLKV 127

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++ +++ +       + + ++ QKEV +RI+A   +  YG LS+   + 
Sbjct: 128 VANLPYYITTPIMMHFLESQVP---VDEMVVMMQKEVADRISAVPGTKAYGSLSIAVQYY 184

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQ 239
            +A + F +   VF P P V S ++       P       +   K+T+ AF  RRKTL  
Sbjct: 185 MEAKLAFIVPKTVFVPQPNVDSAILKLTRRPQPAVAVTDEKEFFKLTKAAFQLRRKTLWN 244

Query: 240 SLKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +L+   G++          L  +GI+   R E LS+ +F +++N +   +
Sbjct: 245 NLQNSYGKDEETKQWLADSLEASGIDPKRRGETLSLAEFAKLSNEMQARK 294


>gi|302669432|ref|YP_003829392.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus
           B316]
 gi|302393905|gb|ADL32810.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus
           B316]
          Length = 292

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 19/288 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N + + K +L+ + +  KK  GQNFL+D  +L  I  ++G      V+EIG G G+LT
Sbjct: 4   LGNPART-KEVLAKFGMSAKKKFGQNFLIDSGVLDGIVSAAGVTKDDCVLEIGPGIGSLT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    A KV+ +E D+   P+L D  S++ N + +I +D LKVD E     +N  +PI
Sbjct: 63  QYLAES-AGKVVAVEIDKTLIPVLADTLSEYDN-VTVINEDVLKVDIEAIVKEYNGGNPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       ES+T++ QKEV +R+     +  YG LS+  G
Sbjct: 121 KVVANLPYYITTPIIMKLFESGAP---IESITVMVQKEVADRMAMGPGNKDYGSLSLAVG 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237
           +  KA+ + D+ P  F P P V S V+    +  P  C    + + +I + +F +RRKTL
Sbjct: 178 YYAKASEVMDVPPSSFIPQPGVGSAVVKLTRYSEPAVCVQDEKYMFEIIRTSFNQRRKTL 237

Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
             SL             +  L + GI+   R E LS+E F R+++IL 
Sbjct: 238 SNSLANNPALRVSRDQVQAALAEMGIDEKARGEILSLEQFARLSDILQ 285


>gi|205372007|ref|ZP_03224825.1| dimethyladenosine transferase [Bacillus coahuilensis m4-4]
          Length = 294

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 96/294 (32%), Positives = 145/294 (49%), Gaps = 20/294 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M         K IL  +    KK +GQNFL+D NIL+ I E++G       +E+G G G 
Sbjct: 1   MKDIATPIRTKEILQKHGFSFKKSLGQNFLIDPNILRNITEAAGLTKEFGAVEVGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116
           LT+ L    A+KV+  E DQ+  PIL+D  S + N +EII  D LK D E    + F+  
Sbjct: 61  LTEHLA-RSAKKVVSFEIDQRLVPILEDTLSPYDN-VEIILQDFLKADVESVLREQFSPD 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+ ++ANLPY I T ++   +         + + ++ QKEV +RI+A+  +  YG LS+
Sbjct: 119 DPLMLVANLPYYITTPIIMRVLLERLP---IDRIVVMLQKEVADRISAKPGTKEYGSLSI 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              + T+A  +  +   VF P P V S VI       PI      +    +T+ +F +RR
Sbjct: 176 AIQYYTEAETVMIVPKTVFMPQPNVDSAVIRLTKRKEPIARVEDEDFFFTVTRASFAQRR 235

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT+  +L     E           L   G++   R E LSIE+F  ++N L  +
Sbjct: 236 KTILNNLSSQLVEGKNKKDLLVQCLESVGVDPTRRGETLSIEEFAELSNALYPH 289


>gi|50122780|ref|YP_051947.1| dimethyladenosine transferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|115311578|sp|Q6D0E0|RSMA_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49613306|emb|CAG76757.1| dimethyladenosine transferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 272

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 99/280 (35%), Positives = 142/280 (50%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
             +     R   VIE D+     L+       ++L IIQ DA+ +DF         P+R+
Sbjct: 53  APIGERMDR-FTVIELDRDLAARLEKH-PTLKDKLTIIQQDAMTIDFAALAEQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+     T+      +  + QKEV  R+ A  NS  +GRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKTFGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF +RRKTLR 
Sbjct: 168 CQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAELPYPVSDIRMLSRITTEAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L     L + GI    RAEN+++E +CR+ N L+++
Sbjct: 228 SLGNLFTPETLTELGINITSRAENVTVEQYCRLANWLSEH 267


>gi|289627688|ref|ZP_06460642.1| dimethyladenosine transferase [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330868491|gb|EGH03200.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 268

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL       PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHWRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|257865533|ref|ZP_05645186.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30]
 gi|257871870|ref|ZP_05651523.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10]
 gi|257875149|ref|ZP_05654802.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20]
 gi|257799467|gb|EEV28519.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30]
 gi|257806034|gb|EEV34856.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10]
 gi|257809315|gb|EEV38135.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20]
          Length = 295

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 149/290 (51%), Gaps = 21/290 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL+ +    KK +GQNFL + NIL+KI E++G  +   VIE+G G G LT+ L 
Sbjct: 10  PSRTKEILAKHGFTFKKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRI 121
              A++V+  E D +  P+L D    + N ++II  D L+ D        F + ++ +++
Sbjct: 70  KH-AKQVLAFEIDDRLIPVLADTMQPYQN-VKIIHQDVLQADLATTIQSAFSDTAASLKV 127

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++ +++ +       + + ++ QKEV +RI+A   +  YG LS+   + 
Sbjct: 128 VANLPYYITTPIMMHFLESQVK---VDEMVVMMQKEVADRISAVPGTKAYGSLSIAVQYY 184

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQ 239
            +A + F +   VF P P V S ++       P       +   K+T+ AF  RRKTL  
Sbjct: 185 MEAKLAFIVPKTVFVPQPNVDSAILKLTRRSQPAVAVTDEKEFFKLTKAAFQLRRKTLWN 244

Query: 240 SLKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +L+   G++          L  +GI+   R E LS+ +F +++N +   +
Sbjct: 245 NLQNSYGKDETTKQWLADSLEASGIDPKRRGETLSLAEFAKLSNEMQARK 294


>gi|311280966|ref|YP_003943197.1| dimethyladenosine transferase [Enterobacter cloacae SCF1]
 gi|308750161|gb|ADO49913.1| dimethyladenosine transferase [Enterobacter cloacae SCF1]
          Length = 273

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 144/280 (51%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAEKLGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +PH  P      +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTPPHPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L   ++L   GI+  +RAEN+S+  +C++ N LT+N
Sbjct: 228 SLGNLFTVDVLTGLGIDPAVRAENISVAQYCQMANWLTEN 267


>gi|257465501|ref|ZP_05629872.1| dimethyladenosine transferase [Actinobacillus minor 202]
 gi|257451161|gb|EEV25204.1| dimethyladenosine transferase [Actinobacillus minor 202]
          Length = 289

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 19/289 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  N          H     +K  GQNFL D+NI+  I  +    +G  ++EIG G G 
Sbjct: 1   MSHINSK-------KHLGHTARKRFGQNFLHDMNIIHGIVSAINPKNGQYLLEIGPGLGA 53

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----I 115
           LT+ +  L   K+ V+E D+     L+       ++L II+ DAL+ +F ++F       
Sbjct: 54  LTEPVAEL-VDKLTVVELDRDLAERLRHH-PFLNHKLTIIEQDALRFNFREYFESLDLKE 111

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
              +R+  NLPYNI T L+F+           + +  + QKEV +R+ A  NS  YGRL+
Sbjct: 112 DEGVRVFGNLPYNISTPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLT 168

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKR 233
           ++  +  +   + ++ P  F P+PKV S V+  +PH   P P   +  L ++T +AF +R
Sbjct: 169 IMAQYYCQVMPVLEVPPTAFKPAPKVDSAVVRLVPHKQIPHPVKDVYWLNRVTTQAFNQR 228

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           RKTLR +L  L     L   GI+ N RAENL+I D+ R+ N L DN  +
Sbjct: 229 RKTLRNALSTLFSAEQLETLGIDLNARAENLNIADYARLANWLCDNPPL 277


>gi|170768489|ref|ZP_02902942.1| dimethyladenosine transferase [Escherichia albertii TW07627]
 gi|170122593|gb|EDS91524.1| dimethyladenosine transferase [Escherichia albertii TW07627]
          Length = 273

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L + GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSAEVLTEMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|77461356|ref|YP_350863.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1]
 gi|118600888|sp|Q3K5T2|RSMA_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|77385359|gb|ABA76872.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1]
          Length = 272

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 140/267 (52%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  S  +  G  ++EIG G G LT  +L  GA ++ 
Sbjct: 3   EQYQHKARKRFGQNFLHDAGVIDRILRSINAKAGDRMLEIGPGQGALTAGILNSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +   N   + Q DALK DF       + +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ ++          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH            L+++ +EAF +RRKTLR +LK+L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHRLLERVVREAFNQRRKTLRNTLKQLLSNAEIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           AG++ +LR E L +  F R+ + L + 
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADKLAEQ 264


>gi|170755195|ref|YP_001779707.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra]
 gi|259494244|sp|B1ID54|RSMA_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|169120407|gb|ACA44243.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra]
          Length = 275

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 98/276 (35%), Positives = 149/276 (53%), Gaps = 12/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   
Sbjct: 3   TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLER- 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V  IE D    PIL++   ++ N   +I  DALK++F +       I+++ANLPY +
Sbjct: 62  AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKINFNELMENKDSIKLVANLPYYV 120

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   ++       ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  
Sbjct: 121 TTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRK 177

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
           +SP+ F P PKV S VI       P       +    + + +F  RRKTL  SLK L   
Sbjct: 178 VSPNSFIPKPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273


>gi|325688925|gb|EGD30933.1| dimethyladenosine transferase [Streptococcus sanguinis SK115]
          Length = 290

 Score =  295 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 149/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D  S   N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLSDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKSYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSYFGKSEETKGKLTAALERANLSPSVRGEALSLEEFARLADALKS 287


>gi|152999580|ref|YP_001365261.1| dimethyladenosine transferase [Shewanella baltica OS185]
 gi|160874199|ref|YP_001553515.1| dimethyladenosine transferase [Shewanella baltica OS195]
 gi|166221701|sp|A6WK59|RSMA_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028816|sp|A9L438|RSMA_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|151364198|gb|ABS07198.1| dimethyladenosine transferase [Shewanella baltica OS185]
 gi|160859721|gb|ABX48255.1| dimethyladenosine transferase [Shewanella baltica OS195]
 gi|315266431|gb|ADT93284.1| dimethyladenosine transferase [Shewanella baltica OS678]
          Length = 268

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 143/280 (51%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDGNVIDRIVGAIAPDNHHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +       + V+E D+     L        ++L I Q DAL+ DF +       +++ 
Sbjct: 53  EPVAE-AVDNLTVVELDRDLVERLHHH-PVLKDKLTIHQGDALQFDFGQLSVPGKKMKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+      +    E++  + QKEV  R++A      YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYFC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ PH F P+PKV S V+  +P+   P PC  +  L+ +   AF  RRKTLR +
Sbjct: 168 QVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFPCKDVTVLRHLCTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK +  ++   Q GI+++ R E +S++ +  + N++ D +
Sbjct: 228 LKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267


>gi|300724851|ref|YP_003714176.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Xenorhabdus nematophila ATCC 19061]
 gi|297631393|emb|CBJ92090.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Xenorhabdus nematophila ATCC
           19061]
          Length = 269

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 146/282 (51%), Gaps = 16/282 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNNK H             +K  GQNFL D  I+  I ++     G  V+EIG G G LT
Sbjct: 1   MNNKVHQ--------GHHARKRFGQNFLTDQFIIHSIVDAMNPQIGQAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +      K+ V+E D+     L  +  +  ++L IIQ DA+ VDF +        +RI
Sbjct: 53  EPVGER-MDKMTVVELDRDLAARLH-VHPKLKDKLTIIQQDAMTVDFGQIAKERGQSLRI 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      ++ + QKEV  R+ A   S  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMSFMLQKEVVNRLVAGPGSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  IPH   P P   +  L +IT +AF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPTAFTPAPKVDSAVVRLIPHKTIPHPVHDIRILARITTQAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           SL  +     L + G++   RAEN+S+E +C++ N L+   +
Sbjct: 228 SLSHIFSVEQLSELGVDPGTRAENISVEQYCKMANWLSSQSE 269


>gi|322514872|ref|ZP_08067890.1| dimethyladenosine transferase [Actinobacillus ureae ATCC 25976]
 gi|322119176|gb|EFX91321.1| dimethyladenosine transferase [Actinobacillus ureae ATCC 25976]
          Length = 289

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 94/272 (34%), Positives = 142/272 (52%), Gaps = 12/272 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D+N++  I  +    +G  ++EIG G G LT+ +      K+ 
Sbjct: 8   KHLGHTARKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAEQ-VDKLT 66

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIRIIANLPYNI 129
           V+E D+     L+       ++L II+ DAL+ +F ++F     N S  IR+  NLPYNI
Sbjct: 67  VVELDRDLAGRLRHH-PFLNHKLTIIEQDALRFNFREYFESLELNESEGIRVFGNLPYNI 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + +
Sbjct: 126 STPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVIPVLE 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P+PKV S V+  +PH         +  L  +T +AF +RRKTLR +L  L   
Sbjct: 183 VPPTAFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNCVTTQAFNQRRKTLRNALSTLFSP 242

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             L    I+ N RAENLSI D+ R+ N L DN
Sbjct: 243 EQLEALNIDLNARAENLSIADYARLANWLYDN 274


>gi|157147529|ref|YP_001454848.1| dimethyladenosine transferase [Citrobacter koseri ATCC BAA-895]
 gi|166221659|sp|A8ALP9|RSMA_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157084734|gb|ABV14412.1| hypothetical protein CKO_03329 [Citrobacter koseri ATCC BAA-895]
          Length = 273

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+ ++F +    I  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSEKIGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L    +L + GI+  LRAEN+S+  +C++ N L++N
Sbjct: 228 SLGNLFSVEVLTELGIDPALRAENISVAQYCQMANYLSEN 267


>gi|126173221|ref|YP_001049370.1| dimethyladenosine transferase [Shewanella baltica OS155]
 gi|217974469|ref|YP_002359220.1| dimethyladenosine transferase [Shewanella baltica OS223]
 gi|166221700|sp|A3D188|RSMA_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807883|sp|B8EB35|RSMA_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|125996426|gb|ABN60501.1| dimethyladenosine transferase [Shewanella baltica OS155]
 gi|217499604|gb|ACK47797.1| dimethyladenosine transferase [Shewanella baltica OS223]
          Length = 268

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 143/280 (51%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDGNVIDRIVGAISPDNHHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +       + V+E D+     L        ++L I Q DAL+ DF +       +++ 
Sbjct: 53  EPVAE-AVDNLTVVELDRDLVERLHHH-PVLKDKLTIHQGDALQFDFGQLSVPGKKMKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+      +    E++  + QKEV  R++A      YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYFC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ PH F P+PKV S V+  +P+   P PC  +  L+ +   AF  RRKTLR +
Sbjct: 168 QVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFPCKDVTVLRHLCTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK +  ++   Q GI+++ R E +S++ +  + N++ D +
Sbjct: 228 LKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267


>gi|119474855|ref|ZP_01615208.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2143]
 gi|119451058|gb|EAW32291.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2143]
          Length = 267

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 7/264 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +   +K  GQNFL D  I+ +IA +  + D   ++EIG G G LT  +L  G  ++  IE
Sbjct: 8   QHRARKRFGQNFLQDQGIIHRIARAVHATDKDHIVEIGPGQGALTTDILAGGC-QLDAIE 66

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+   PIL+   S+ P R  + Q DAL  DF         +R++ NLPYNI T L+F  
Sbjct: 67  LDRDLIPILQQQFSEQP-RFHLHQGDALTFDFSSLVKGEEKLRVVGNLPYNISTPLIFRL 125

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +         + +  + Q EV  R+ A   S  YGRLS++  +      +F++ P  F P
Sbjct: 126 LDQHE---MIQDMHFMLQLEVVNRLAASPGSKSYGRLSIMAQYYCDIHSLFEVPPEAFSP 182

Query: 198 SPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++   P+  P      +++L+ + +  F +RRKTLR SLK     + +    I
Sbjct: 183 RPKVQSAIVRLTPYKQPPHPAKNIKTLQALLRTCFNQRRKTLRNSLKNDLSSDQMEALDI 242

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
             + R E LS+E F  ++N +  +
Sbjct: 243 NPSARPETLSLEQFVNMSNSIETS 266


>gi|127511813|ref|YP_001093010.1| dimethyladenosine transferase [Shewanella loihica PV-4]
 gi|166221702|sp|A3QBA3|RSMA_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|126637108|gb|ABO22751.1| dimethyladenosine transferase [Shewanella loihica PV-4]
          Length = 269

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 144/280 (51%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D N++ +I  +    +   ++EIG G   LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDSNVINRIVGAISPDNDHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +      K+ V+E D+     L+       ++LEI Q DALK DF++       +++ 
Sbjct: 53  EPVAES-IDKLTVVELDKDLVERLQ-THPFLKDKLEIHQGDALKFDFKQLVEEGKQMKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+           E++  + QKEV  R++A   +  YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFEFAEH---IENMHFMLQKEVVLRLSAAPGTKAYGRLTVMAQYFC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ P  F P PKV S V+  +P+   P PC  ++ L+ +   AF  RRKTLR +
Sbjct: 168 QVMPVLEVPPGCFTPPPKVDSAVVRLVPYKEKPYPCKDVDLLRHLCTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK+L  ++     GI+ ++R E ++++ +  + N L D +
Sbjct: 228 LKQLLNDDDFSALGIDASMRPEQITVQQYVAMANHLVDKR 267


>gi|94499972|ref|ZP_01306507.1| dimethyladenosine transferase [Oceanobacter sp. RED65]
 gi|94427830|gb|EAT12805.1| dimethyladenosine transferase [Oceanobacter sp. RED65]
          Length = 266

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 91/267 (34%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D N+++ I +S     G  ++EIG G G +T+ LL     ++ V+E
Sbjct: 2   GHQARKRFGQNFLHDPNVIRNIVKSIRPKVGDRIVEIGPGMGAITEELLDATEGELDVVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFN 136
            D+   P LK     H     I + DALK DF          +RI+ NLPYNI T L+F+
Sbjct: 62  LDRDLIPGLKVKFFNHKG-FRIHESDALKFDFATLKQAPEEQLRIVGNLPYNISTPLIFH 120

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S   +    + +  + QKEV +R+ A     +YGRLS++  +  +   MFD+ P  F 
Sbjct: 121 LLS---YSGLVKDMHFMLQKEVVQRLAAGPGDNNYGRLSIMAQYYCQVQHMFDVGPGAFK 177

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P+PKV S ++  +PH + P P    ++ ++I +E+F  RRKTLR +LK+      L + G
Sbjct: 178 PAPKVDSAIVRMVPHQDLPYPVKDHKTFERIVRESFAMRRKTLRNNLKKTISSEELEKLG 237

Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281
           I+  LR E L + ++ RI + + +  D
Sbjct: 238 IDPALRPERLGLPEYTRIADYIYERAD 264


>gi|190149692|ref|YP_001968217.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263000|ref|ZP_07544622.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|226729747|sp|B3H0R3|RSMA_ACTP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189914823|gb|ACE61075.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871626|gb|EFN03348.1| Ribosomal RNA small subunit methyltransferase A [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 289

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 91/272 (33%), Positives = 141/272 (51%), Gaps = 12/272 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D+N++  I  +    +G  ++EIG G G LT+ +      K+ 
Sbjct: 8   KHLGHTARKRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAEQ-VDKLT 66

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSPIRIIANLPYNI 129
           V+E D+     L+       ++L II+ DAL+ +F ++F          +R+  NLPYNI
Sbjct: 67  VVELDRDLAERLRHH-PFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNI 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + +
Sbjct: 126 STPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVMPVLE 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P+PKV S V+  +PH         +  L ++T +AF +RRKTLR +L  L   
Sbjct: 183 VPPTAFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSP 242

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             L    I+ N RAENLSI D+ R+ N L DN
Sbjct: 243 EQLEALSIDLNARAENLSIADYARLANWLYDN 274


>gi|168182310|ref|ZP_02616974.1| dimethyladenosine transferase [Clostridium botulinum Bf]
 gi|237793398|ref|YP_002860950.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657]
 gi|259494242|sp|C3KXY4|RSMA_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|182674690|gb|EDT86651.1| dimethyladenosine transferase [Clostridium botulinum Bf]
 gi|229261997|gb|ACQ53030.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657]
          Length = 275

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 150/276 (54%), Gaps = 12/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   
Sbjct: 3   TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLER- 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V  IE D    PIL++   ++ N   +I  DALK+DF +       I+++ANLPY +
Sbjct: 62  AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNRLMENKDSIKLVANLPYYV 120

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   ++       ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  
Sbjct: 121 TTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCDTKIIRK 177

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
           +SP+ F P PKV S VI       P       +    + + +F  RRKTL  SLK L   
Sbjct: 178 VSPNCFIPRPKVDSIVIKLDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNIN 237

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI++  R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 273


>gi|327488831|gb|EGF20630.1| dimethyladenosine transferase [Streptococcus sanguinis SK1058]
          Length = 290

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 96/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAESAA-EVMAFEIDDRLVPILADTLRGFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKSYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   KI++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKISKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERADLSPSVRGEALSLEEFARLADALKS 287


>gi|312963419|ref|ZP_07777901.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6]
 gi|311282225|gb|EFQ60824.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6]
          Length = 270

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 139/265 (52%), Gaps = 7/265 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            HY+   +K  GQNFL D  ++ +I  S  +     ++EIG G G LTQ LL  G  ++ 
Sbjct: 3   EHYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGG-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +   N   + Q DALK DF       + +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNQQFAGKSN-FNLHQGDALKFDFNTLNAAPNSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ ++          +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLNNAG---IIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH          + L+++ +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHAVLPHPAKDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
           AG++ +LR E L +  F R+ + L 
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADQLA 262


>gi|91794239|ref|YP_563890.1| dimethyladenosine transferase [Shewanella denitrificans OS217]
 gi|123356543|sp|Q12K59|RSMA_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91716241|gb|ABE56167.1| dimethyladenosine transferase [Shewanella denitrificans OS217]
          Length = 267

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 145/280 (51%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D +I+ +I  +    +   ++EIG G G +T
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDDSIISRIVGAISPDNDHVMVEIGPGLGAIT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +      K+ V+E D+     L++      ++L+I Q DAL+ DF         +++ 
Sbjct: 53  EPVAMS-IDKLSVVELDRDLVERLQNH-PTLKDKLDIHQGDALQFDFSTLQQAGKKMKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+      +    E++  + QKEV  R++A      YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFE---FAEIIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYYC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ PH F P+PKV S V+  +P+ N P PC  +  L+ +   AF  RRKTLR +
Sbjct: 168 QVVPVLEVPPHSFTPAPKVDSAVVRLLPYANKPWPCKDVTVLRHLCTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK+L  +       I+ +LR E +S+E +  + N+L D Q
Sbjct: 228 LKQLISDEEFGLLNIDASLRPEQISVEQYVALANLLCDKQ 267


>gi|165975860|ref|YP_001651453.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|226729748|sp|B0BTQ4|RSMA_ACTPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|165875961|gb|ABY69009.1| dimethyladenosine transferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 289

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 91/272 (33%), Positives = 140/272 (51%), Gaps = 12/272 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D+N++  I  +    +G  + EIG G G LT+ +      K+ 
Sbjct: 8   KHLGHTARKRFGQNFLHDMNVIHNIVSAINPKNGQFLFEIGPGLGALTEPVAEQ-VDKLT 66

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSPIRIIANLPYNI 129
           V+E D+     L+       ++L II+ DAL+ +F ++F          +R+  NLPYNI
Sbjct: 67  VVELDRDLAERLRHH-PFLNHKLTIIEQDALRFNFREYFESLELKEGEGVRVFGNLPYNI 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + +
Sbjct: 126 STPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVVPVLE 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P+PKV S V+  +PH         +  L ++T +AF +RRKTLR +L  L   
Sbjct: 183 VPPTAFKPAPKVDSAVVRLMPHKVLPHPVKDVYWLNRVTTQAFNQRRKTLRNALSTLFSP 242

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             L    I+ N RAENLSI D+ R+ N L DN
Sbjct: 243 EQLEALNIDLNARAENLSIADYARLANWLYDN 274


>gi|119775951|ref|YP_928691.1| dimethyladenosine transferase [Shewanella amazonensis SB2B]
 gi|166221699|sp|A1S9G5|RSMA_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119768451|gb|ABM01022.1| dimethyladenosine transferase [Shewanella amazonensis SB2B]
          Length = 267

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D NI+ +I  +    D   ++EIG G   LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDGNIINRIVGAISPDDDHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +   G + + VIE D+     LK +     ++L I Q DA+K DF +       +++ 
Sbjct: 53  EPVAM-GIKNLTVIELDRDLAERLK-VHPTLKDKLTIHQGDAMKFDFSQLVEPERKLKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+           E++  + QKEV  R++A   +  YG+L+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFEFAEH---IENMHFMLQKEVVLRLSASPGTKAYGKLTVMAQYYC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ P  F P PKV S V+  +P+   P PC  +E L+K+   AF  RRKTLR +
Sbjct: 168 QVVPVLEVPPGCFTPPPKVDSAVVRLVPYAEKPWPCHDVEMLRKVCNTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK L  +      GI+  LR E++S+  +  + N L + +
Sbjct: 228 LKPLLQDADFDVLGIDAGLRPEDISVAQYVAMANYLCEKR 267


>gi|323181748|gb|EFZ67161.1| dimethyladenosine transferase [Escherichia coli 1357]
 gi|323945789|gb|EGB41836.1| dimethyladenosine transferase [Escherichia coli H120]
          Length = 273

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+ ++RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSAEVLTGMGIDPSMRAENISVAQYCQMANYLAENAPL 270


>gi|210623277|ref|ZP_03293694.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275]
 gi|210153678|gb|EEA84684.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275]
          Length = 286

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 97/290 (33%), Positives = 150/290 (51%), Gaps = 16/290 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +   + K I+  +     K +GQNFL+D N++ KI + +   +G  VIE+G G G 
Sbjct: 1   MDRLSSHRATKDIVDKHGFKFSKSLGQNFLIDDNVIDKIIDGARVKEGDKVIEVGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           LT+ +    A KV+ +E D+   PILK+  +   N  E++ +D LKVD  K  +      
Sbjct: 61  LTREMAKR-AEKVVAVEIDKNLIPILKETLADFDNT-EVVNEDILKVDINKLVDEKLSGG 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P+++IANLPY I T ++  ++  D        + ++ QKEV +R+ A  ++  YG LSV 
Sbjct: 119 PVKLIANLPYYITTPIVMKFLEEDIP---VTDIVVMVQKEVADRMNAVPSTKDYGALSVA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRK 235
             +     ++     H+F P PKV STVI  H            +   K  + AFG+RRK
Sbjct: 176 VQYYCDTEIVAKAPRHMFIPQPKVDSTVIGLHIREERKYKADNEQLFFKTVKAAFGQRRK 235

Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           TL  SL  +G       + +L +AGI+   R E LSIE+F  ++NI+  N
Sbjct: 236 TLLNSLSSMGVLDKAKIKEVLAEAGIDEKRRGETLSIEEFAHLSNIINKN 285


>gi|290474828|ref|YP_003467708.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Xenorhabdus bovienii SS-2004]
 gi|289174141|emb|CBJ80928.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Xenorhabdus bovienii SS-2004]
          Length = 274

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 146/284 (51%), Gaps = 16/284 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNNK H             +K  GQNFL D  I++ I ++     G  ++EIG G G LT
Sbjct: 1   MNNKVHQ--------GHYARKRFGQNFLTDQFIIESIVDAMNPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           + +      K+ V+E D+     L  +  +  ++L IIQ DA+ VDF +   +    +R+
Sbjct: 53  EPVGER-MDKMTVVELDRDLAARLH-VHPKLKDKLTIIQQDAMTVDFGQLAKDQGQSLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S          ++ + QKEV  R+ A      YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFSYADA---IADMSFMLQKEVVNRLVAGPGCKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S ++  +PH   P P   +  L ++T +AF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPTAFTPAPKVDSAIVRLMPHKAMPYPVKDIRMLARVTTQAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           SL  L     L + G++   RAEN+S+E +C++ + L+     A
Sbjct: 228 SLGDLFSVEQLSELGVDPGTRAENISVEQYCKMASWLSSQAKTA 271


>gi|294139568|ref|YP_003555546.1| dimethyladenosine transferase [Shewanella violacea DSS12]
 gi|293326037|dbj|BAJ00768.1| dimethyladenosine transferase [Shewanella violacea DSS12]
          Length = 272

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 144/280 (51%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             KK  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH--------LGHTAKKRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +      K+ V+E D+     L +      ++LEI Q DAL  DF +       +++ 
Sbjct: 53  EPVAES-IDKLTVVELDKDLVARLHEH-PTLKHKLEIHQGDALNFDFSQLIEEGKELKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+           + +  + QKEV  R++A   +  YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFEFAEH---IKHMHFMLQKEVVLRLSATPGTKAYGRLTVMAQYHC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ P  F P+PKV S V+  +P+   P PC  +E L+++T  AF  RRKTLR +
Sbjct: 168 QIMPVLEVPPECFTPAPKVNSAVVRLVPYKQKPWPCSDVEFLRRMTTTAFSMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK +  +       I+++LR E +++E +  + N+L D +
Sbjct: 228 LKHMITDEEFLALNIDSSLRPEQITVEQYVSMANMLLDKK 267


>gi|237729348|ref|ZP_04559829.1| dimethyladenosine transferase [Citrobacter sp. 30_2]
 gi|226909077|gb|EEH94995.1| dimethyladenosine transferase [Citrobacter sp. 30_2]
          Length = 273

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 146/280 (52%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  +++ I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAQTMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPAPKVDSAVVRLVPHTTMPYPVKDVRVLSRITTEAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L    +L + GI+  +RAEN+S+  +CR+ N L++N
Sbjct: 228 SLGNLFSVEVLTELGIDPAMRAENISVAQYCRMANYLSEN 267


>gi|283835115|ref|ZP_06354856.1| dimethyladenosine transferase [Citrobacter youngae ATCC 29220]
 gi|291069414|gb|EFE07523.1| dimethyladenosine transferase [Citrobacter youngae ATCC 29220]
          Length = 273

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 146/280 (52%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  +++ I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAQTMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPAPKVDSAVVRLVPHATMPYPVKDVRVLSRITTEAFNQRRKTVRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L    +L + GI+  +RAEN+S+  +CR+ N L++N
Sbjct: 228 SLGNLFSVEVLTELGIDPAMRAENISVAQYCRMANYLSEN 267


>gi|256823429|ref|YP_003147392.1| dimethyladenosine transferase [Kangiella koreensis DSM 16069]
 gi|256796968|gb|ACV27624.1| dimethyladenosine transferase [Kangiella koreensis DSM 16069]
          Length = 269

 Score =  294 bits (753), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 104/266 (39%), Positives = 149/266 (56%), Gaps = 8/266 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
                +K  GQNFL D + +++I ES    +   ++EIG G G +T+ L+     ++ V+
Sbjct: 8   QGHQARKRFGQNFLSDNHYIQRIVESIAPQESDRLVEIGPGLGAITEHLVD-KVSELHVV 66

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   P L+   SQ+ N L I Q DALK DF +  N   PIR++ NLPYNI T L+F+
Sbjct: 67  ELDRDLIPRLEQKFSQNTN-LTIHQSDALKFDFRQLAN-DKPIRVVGNLPYNISTPLIFH 124

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++        + +  + QKEV ERI AQ  +  YGRLSV+T +  +A ++F + P  F 
Sbjct: 125 LLNQRE---SIKDMYFMLQKEVVERICAQPGTSSYGRLSVMTQYYCQADLLFLVPPGAFQ 181

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++   P+ + P P   E L  +I   AFG+RRKTLR SLK+   E  L Q G
Sbjct: 182 PPPKVESAIVRLQPYCDLPYPVQDEQLLGQIVTAAFGQRRKTLRNSLKKFINETGLEQLG 241

Query: 255 IETNLRAENLSIEDFCRITNILTDNQ 280
           I+   RAE LS+  F  I + +  NQ
Sbjct: 242 IKPTERAEQLSLSQFVDICHQVELNQ 267


>gi|62178655|ref|YP_215072.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|75484893|sp|Q57TH0|RSMA_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62126288|gb|AAX63991.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase;
           kasugamycin resistance [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322713108|gb|EFZ04679.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 273

 Score =  294 bits (753), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 146/283 (51%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      K+ VIE D+     L+       ++L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGSKLTIYQQDAMTMNFGELSAQLGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L     L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270


>gi|304405864|ref|ZP_07387522.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9]
 gi|304345107|gb|EFM10943.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9]
          Length = 303

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/285 (30%), Positives = 138/285 (48%), Gaps = 18/285 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + I+  Y    KK +GQNFL+D NIL KI  ++        +EIG G G LTQ L 
Sbjct: 18  PTRTRDIVKKYGFEFKKSLGQNFLIDQNILHKIVAAAELDGTKGALEIGPGIGALTQHLA 77

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122
              A +V  +E D +  PIL+D  +   N +E++  D LK++  + F       S I ++
Sbjct: 78  -RSAGRVTAVEIDNRLIPILRDTLAGEAN-VEVVHADVLKLNLHELFAERFEGLSGISVV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +L   +         E + ++ QKEV +R+ A+     YG LSV   +  
Sbjct: 136 ANLPYYVTTPILMKLLEERLP---LEHIVVMIQKEVADRMAAKPGGKEYGSLSVAVQYYC 192

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240
           + +++  +   VF P P V S VI       P     +     +  Q +F +RRKTL  +
Sbjct: 193 EPSIVCTVPHTVFIPQPNVDSAVIKLSLREKPAVETRDEAHFFRTVQASFAQRRKTLMNN 252

Query: 241 LKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +    G++       ++   GI+ + R E LS+E+F +++  L D
Sbjct: 253 MSSWIGKDHRETLTSIMEGCGIQPSRRGETLSLEEFAKLSAALYD 297


>gi|206578528|ref|YP_002240485.1| dimethyladenosine transferase [Klebsiella pneumoniae 342]
 gi|288937185|ref|YP_003441244.1| dimethyladenosine transferase [Klebsiella variicola At-22]
 gi|290512606|ref|ZP_06551972.1| dimethyladenosine transferase [Klebsiella sp. 1_1_55]
 gi|226732590|sp|B5Y1Z4|RSMA_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|206567586|gb|ACI09362.1| dimethyladenosine transferase [Klebsiella pneumoniae 342]
 gi|288891894|gb|ADC60212.1| dimethyladenosine transferase [Klebsiella variicola At-22]
 gi|289774947|gb|EFD82949.1| dimethyladenosine transferase [Klebsiella sp. 1_1_55]
          Length = 273

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 146/280 (52%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHRTMPYPVKEVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L    +L + G++  +RAEN+S+E +C++ N L++N
Sbjct: 228 SLGNLFSVEVLTELGVDPAVRAENISVEQYCKMANWLSNN 267


>gi|16763480|ref|NP_459095.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|20141600|sp|Q56016|RSMA_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|16418587|gb|AAL19054.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase;
           kasugamycin resistance [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|312911060|dbj|BAJ35034.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 273

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKEYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L     L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270


>gi|120556413|ref|YP_960764.1| dimethyladenosine transferase [Marinobacter aquaeolei VT8]
 gi|226732595|sp|A1U6F8|RSMA_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120326262|gb|ABM20577.1| dimethyladenosine transferase [Marinobacter aquaeolei VT8]
          Length = 276

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/266 (33%), Positives = 145/266 (54%), Gaps = 8/266 (3%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           + +    +K  GQNFL D  ++++I  +       +++EIG G G +T+ +L +  R + 
Sbjct: 3   NKHGHQARKRFGQNFLHDPGVIERIVRAINPKPEDSIVEIGPGLGAITEEILAINPR-LQ 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   P+L+     +P    I + DAL  DF +  +   P+RI+ NLPYNI T L+
Sbjct: 62  VVELDRDLIPVLRTKFFNYPE-FRIHEADALSFDFSQLVS-DRPLRIVGNLPYNISTPLI 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +S        + +  + QKEV +R+ A     +YGRL ++  +  K   +F++ P  
Sbjct: 120 FHLLSQSG---VVQDMHFMLQKEVVQRLAAVPGDNNYGRLGIMAQYFCKVQPLFEVGPGA 176

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S ++  +PH   P P   L++L+ + + AF  RRKTLR++L  +     L  
Sbjct: 177 FRPAPKVDSAIVRLVPHKELPYPAKDLKTLQAVVRTAFNARRKTLRKALAAMVTVEQLQS 236

Query: 253 AGIETNLRAENLSIEDFCRITNILTD 278
            GI   LR ENL + D+ RI ++L D
Sbjct: 237 LGINDGLRPENLGLADYVRIADLLAD 262


>gi|167760646|ref|ZP_02432773.1| hypothetical protein CLOSCI_03028 [Clostridium scindens ATCC 35704]
 gi|167661771|gb|EDS05901.1| hypothetical protein CLOSCI_03028 [Clostridium scindens ATCC 35704]
          Length = 291

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 147/288 (51%), Gaps = 19/288 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  IL  Y+   +K  GQNFL+D ++L KI  ++       V+EIG G G +
Sbjct: 5   TLGNPQNTI-EILQKYQFTFQKKFGQNFLIDTHVLDKIIRAADIGKDDMVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    A KVI +E D+   PIL D  S + N ++II +D LK+D ++     N   P
Sbjct: 64  TQYLAE-AAGKVIAVEIDKNLIPILTDTLSGYEN-VQIINEDVLKLDIQRLVEEENAGRP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +        S+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---LYSVTVMVQKEVADRMQTGPGNKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236
            +  +  ++ ++ P+ F P PKV S VI    +  P     +   L  I + +F +RRKT
Sbjct: 179 QYYAEPYIVANVPPNCFMPRPKVGSAVIRLTRYEKPPVEVEDERLLFDIIRASFNQRRKT 238

Query: 237 LRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L   L                + Q G   ++R E L++E+F +++N L
Sbjct: 239 LANGLNNSDRLDVPKEAITEAIQQLGKGPSVRGETLTLEEFAKLSNSL 286


>gi|167646487|ref|YP_001684150.1| dimethyladenosine transferase [Caulobacter sp. K31]
 gi|167348917|gb|ABZ71652.1| dimethyladenosine transferase [Caulobacter sp. K31]
          Length = 288

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 116/270 (42%), Positives = 165/270 (61%), Gaps = 7/270 (2%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+ +L+ + ++  K  GQ+FLLDLNI +KIA  +G  +G TVIE+G GPG LT+ LL 
Sbjct: 22  PPLREVLAEHDLLANKSFGQHFLLDLNITRKIARLAGVGEGDTVIEVGPGPGGLTRTLLE 81

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GAR V+ +E D++F P+L+D+S     RL I+Q DALKVD         P  +++NLPY
Sbjct: 82  TGAR-VVAVEMDKRFLPLLEDLSVAADGRLTIVQGDALKVDMAAVA--GGPAHMVSNLPY 138

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+GT LL NW++    P    S+TL+FQKEV +RI A  +   YGRL+V++     A ++
Sbjct: 139 NVGTPLLINWLTGPFRP---LSMTLMFQKEVADRIAADVDDDAYGRLAVVSQTVCTAKVV 195

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            D+    F P PKV S V+  +P    P    + +L+K+T  AFG+RRK LR SLK LGG
Sbjct: 196 MDLPARAFTPPPKVASAVVRLVPLTPAPDKAMVAALEKVTAAAFGQRRKMLRSSLKGLGG 255

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             L  +AGI  + RAE + +E F  +   +
Sbjct: 256 AALCEKAGINPDARAETIPVEGFQALARAV 285


>gi|56418570|ref|YP_145888.1| dimethyladenosine transferase [Geobacillus kaustophilus HTA426]
 gi|297528410|ref|YP_003669685.1| dimethyladenosine transferase [Geobacillus sp. C56-T3]
 gi|62900466|sp|Q5L3V8|RSMA_GEOKA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56378412|dbj|BAD74320.1| dimethyladenosine transferase [Geobacillus kaustophilus HTA426]
 gi|297251662|gb|ADI25108.1| dimethyladenosine transferase [Geobacillus sp. C56-T3]
          Length = 293

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 137/284 (48%), Gaps = 22/284 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL  Y    KK +GQNFL+D NIL+KI + +        IEIG G G LT+ L    
Sbjct: 11  TKEILERYGFSFKKSLGQNFLIDANILRKIVDVADISPDTGAIEIGPGIGALTEQLARR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIAN 124
           A+KV+  E D +  PIL D  S + N + I   D LK D      E+  ++S    ++AN
Sbjct: 70  AKKVVAFEIDGRLLPILADTLSPYDN-VRIFHQDVLKADLHAVIAEELADVSDR-MVVAN 127

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY + T ++   ++          + ++ QKEV +R+ A+  +  YG L++   + T+A
Sbjct: 128 LPYYVTTPIIMKLLTERLP---IRGMVVMLQKEVADRLAAKPGTKDYGSLTIAVQYYTEA 184

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242
            ++  +   VF P P V S VI  +   +P     +     ++ + +F +RRKTL  +L 
Sbjct: 185 EVIMTVPRTVFMPQPNVDSAVIRLVKRQHPPVVVDDEGVFFQVVRASFAQRRKTLFNNLT 244

Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                        E +L   GI+   R E L I +F  ++N L 
Sbjct: 245 NNLPGGKENKEQIERVLVALGIDPRRRGETLDIAEFASLSNALA 288


>gi|226947305|ref|YP_002802396.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto]
 gi|259494243|sp|C1FQ40|RSMA_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226840947|gb|ACO83613.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto]
          Length = 275

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 150/276 (54%), Gaps = 12/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   
Sbjct: 3   TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLER- 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V  IE D    PIL++   ++ N   +I  DALK+DF +       I+++ANLPY +
Sbjct: 62  AKEVYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYV 120

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   ++       ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  
Sbjct: 121 TTPIISRLLTEKCN---FKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRK 177

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
           +SP+ F P PKV S VI       P       +    + + +F  RRKTL  SLK L   
Sbjct: 178 VSPNSFIPRPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIN 237

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI++  R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYD 273


>gi|291526963|emb|CBK92549.1| dimethyladenosine transferase [Eubacterium rectale M104/1]
          Length = 288

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/287 (33%), Positives = 153/287 (53%), Gaps = 19/287 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N  +++  +L  Y    +K  GQNFL+D  IL++I +S+G      ++EIG G G +T
Sbjct: 4   LGNPKNTI-EVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    AR+VI +E D    PILKD  S++ N +++I DD LKVD       +N   PI
Sbjct: 63  QYLCES-ARQVIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +S+T++ QKEV +R+ A      YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFESHVP---IDSITIMVQKEVADRMQAGPGKKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTL 237
           + +   ++ ++ P  F P PKV S+VI    +  P +    E L  KI + +F +RRKTL
Sbjct: 178 YYSHPEIVVNVPPSCFMPQPKVGSSVISLKRYEKPVVDVDDEKLMFKIIRASFNQRRKTL 237

Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              L   GG        +  +   G+  N+R E LS+  F +++NI+
Sbjct: 238 ANGLNNFGGMGLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284


>gi|168177414|ref|ZP_02612078.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916]
 gi|182671129|gb|EDT83103.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916]
          Length = 275

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 98/276 (35%), Positives = 149/276 (53%), Gaps = 12/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I++ Y+    K +GQNFL+D ++L+ I E +      TVIEIG G G LT+ LL   
Sbjct: 3   TKEIVNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLER- 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+++  IE D    PIL++   ++ N   +I  DALK+DF +       I+++ANLPY +
Sbjct: 62  AKEIYSIELDGDLIPILQEELKEY-NNFTLIHKDALKIDFNELMENKDSIKLVANLPYYV 120

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   ++       ++SLT++ QKEV ERI A+ N   YG L+VL  +     ++  
Sbjct: 121 TTPIISRLLTEKC---DFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRK 177

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG- 246
           +SP+ F P PKV S VI       P       +    + + +F  RRKTL  SLK L   
Sbjct: 178 VSPNSFIPRPKVDSIVIKLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNID 237

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               EN   +AGI+   R E LSIE+F ++++ + D
Sbjct: 238 KESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYD 273


>gi|62900532|sp|Q6LV41|RSMA_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 271

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/270 (33%), Positives = 138/270 (51%), Gaps = 7/270 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  S   L G  ++EIG G G LT+ +  L   K  V
Sbjct: 7   HLGHRARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGALTEPVGRL-VDKFSV 65

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L+       ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 66  IELDRDLAKRLRHH-PDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +  +        E +  + QKEV  R+ A      YGRL+V+  + ++ T + ++ P  F
Sbjct: 125 HLFTFHEH---VEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESF 181

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S V+   P+   P PC  L+ L ++ +E F +RRKT+R   K L     L   
Sbjct: 182 TPAPKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEDL 241

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283
           G+   LR EN++++ F ++ N L  N   A
Sbjct: 242 GVNPGLRPENITLQQFVKMANWLDANHQNA 271


>gi|291526466|emb|CBK92053.1| dimethyladenosine transferase [Eubacterium rectale DSM 17629]
          Length = 292

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/287 (33%), Positives = 153/287 (53%), Gaps = 19/287 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N  +++  +L  Y    +K  GQNFL+D  IL++I +S+G      ++EIG G G +T
Sbjct: 4   LGNPKNTI-EVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    AR+VI +E D    PILKD  S++ N +++I DD LKVD       +N   PI
Sbjct: 63  QYLCES-ARQVIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +S+T++ QKEV +R+ A      YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFESHVP---IDSITIMVQKEVADRMQAGPGKKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESL-KKITQEAFGKRRKTL 237
           + +   ++ ++ P  F P PKV S+VI    +  P +    E L  KI + +F +RRKTL
Sbjct: 178 YYSHPEIVVNVPPSCFMPQPKVGSSVISLKRYEKPVVDVDDEKLMFKIIRASFNQRRKTL 237

Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              L   GG        +  +   G+  N+R E LS+  F +++NI+
Sbjct: 238 ANGLNNFGGMGLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284


>gi|325579206|ref|ZP_08149162.1| dimethyladenosine transferase [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159441|gb|EGC71575.1| dimethyladenosine transferase [Haemophilus parainfluenzae ATCC
           33392]
          Length = 287

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/273 (34%), Positives = 139/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVSAIHPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  RL +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-RLTVIETDAMQFDFGELYTKENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 240 AEDLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|170725376|ref|YP_001759402.1| dimethyladenosine transferase [Shewanella woodyi ATCC 51908]
 gi|226732625|sp|B1KGH9|RSMA_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|169810723|gb|ACA85307.1| dimethyladenosine transferase [Shewanella woodyi ATCC 51908]
          Length = 267

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 144/280 (51%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D N++ +I  +    +   ++EIG G   LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +      K+ V+E D+     L++      ++L+I Q DAL+ DF +       +++ 
Sbjct: 53  EPVA-NAIDKLTVVELDKDLVARLQEH-PTLKDKLDIHQGDALQFDFSQLVEEGRQMKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+      +    E++  + QKEV  R++A   +  YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ P  F P PKV S V+  +P+   P PC  ++ L+ +T  AF  RRKTLR +
Sbjct: 168 QVMPVLEVPPGSFTPPPKVDSAVVRLVPYKVKPWPCKDVDQLRHLTTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK +  +    + GI+  LR E +++E +  + N + D Q
Sbjct: 228 LKHMISDEEFAELGIDATLRPEQITVEQYVAMANFVVDKQ 267


>gi|261417535|ref|YP_003251217.1| dimethyladenosine transferase [Geobacillus sp. Y412MC61]
 gi|319765192|ref|YP_004130693.1| dimethyladenosine transferase [Geobacillus sp. Y412MC52]
 gi|261373992|gb|ACX76735.1| dimethyladenosine transferase [Geobacillus sp. Y412MC61]
 gi|317110058|gb|ADU92550.1| dimethyladenosine transferase [Geobacillus sp. Y412MC52]
          Length = 293

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 137/284 (48%), Gaps = 22/284 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL  Y    KK +GQNFL+D NIL+KI + +        IEIG G G LT+ L    
Sbjct: 11  TKEILERYGFSFKKSLGQNFLIDANILRKIVDVADISPDTGAIEIGPGIGALTEQLARR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIAN 124
           A+KV+  E D +  PIL D  S + N + I   D LK D      E+  ++S    ++AN
Sbjct: 70  AKKVVAFEIDGRLLPILADTLSPYDN-VRIFHQDVLKADLHAVIAEELADVSDR-MVVAN 127

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY + T ++   ++          + ++ QKEV +R+ A+  +  YG L++   + T+A
Sbjct: 128 LPYYVTTPIIMKLLTDRLP---IRGMVVMLQKEVADRLAAKPGTKDYGSLTIAVQYYTEA 184

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLK 242
            ++  +   VF P P V S VI  +   +P     +     ++ + +F +RRKTL  +L 
Sbjct: 185 EVIMTVPRTVFMPQPNVDSAVIRLVKRQHPPVVVDDEGVFFQVVRASFAQRRKTLFNNLT 244

Query: 243 RLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                        E +L   GI+   R E L I +F  ++N L 
Sbjct: 245 NNLPGGKENKEQIERVLVALGIDPRRRGETLDIAEFASLSNALA 288


>gi|194467627|ref|ZP_03073614.1| dimethyladenosine transferase [Lactobacillus reuteri 100-23]
 gi|194454663|gb|EDX43560.1| dimethyladenosine transferase [Lactobacillus reuteri 100-23]
          Length = 297

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 159/299 (53%), Gaps = 27/299 (9%)

Query: 3   MNNKS-----HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M+N          + I+  Y I  KK  GQNFL DLN+LK I E++   D   VIEIG G
Sbjct: 1   MSNSPEIGSRTRTRAIMEKYGIHTKKSFGQNFLTDLNVLKNIVEAADITDNDNVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---- 113
            G LT+ L    A +V+ +E DQ   P+LK++ S + N +++I  D L+ +  +      
Sbjct: 61  IGALTEQLA-QAAGEVLALEIDQDLIPVLKEVLSPYDN-VKVINQDVLQANLPELIKKEF 118

Query: 114 -NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
            + S PI+++ANLPY I + +L N +++   P  W ++ ++ QKEV +R+TA+  +  YG
Sbjct: 119 KDPSRPIKVVANLPYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYG 175

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEA 229
            L++   ++ +A + FD+S  VF PSP V S ++   P  NP+P      + L    +  
Sbjct: 176 ALTLAIEYQMQAKIAFDVSRKVFVPSPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGC 235

Query: 230 FGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           F  RRK+L  +L+ + G++         +L Q  I   +R E L++E F  + N L   
Sbjct: 236 FAHRRKSLWNNLQSVIGKDPAVKEKMTAVLAQLDISPQIRPEKLTLEQFIELANALHQQ 294


>gi|296101215|ref|YP_003611361.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055674|gb|ADF60412.1| dimethyladenosine transferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 273

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M N+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MTNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DELTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYF 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   L  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHKTMPYPVKDLRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L   ++L + GI+  +RAEN+S+E +C++ N +++N
Sbjct: 228 SLGNLFTVDVLAELGIDPAMRAENISVEQYCKLANYISEN 267


>gi|237809113|ref|YP_002893553.1| dimethyladenosine transferase [Tolumonas auensis DSM 9187]
 gi|259494261|sp|C4L9L4|RSMA_TOLAT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|237501374|gb|ACQ93967.1| dimethyladenosine transferase [Tolumonas auensis DSM 9187]
          Length = 268

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 138/267 (51%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D   +  I  +        ++EIG G G LT+ +      K+ V
Sbjct: 7   HLGHRARKRFGQNFLHDQYTIDSIVSAIAPRQNDVMVEIGPGLGALTEPVCDQ-IDKLHV 65

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L++   +  ++L + + DA+K +F++      P+RI  NLPYNI T L+F
Sbjct: 66  VELDRDLAARLREH-PRLKDKLIVHEADAMKFNFDELAQPGRPLRIFGNLPYNISTPLIF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +       +   +  + QKEV ER+ A  NS  YGRL+V+T +  +   + ++ PH F
Sbjct: 125 HLLEKSQ---YITDMYFMLQKEVVERLAAGPNSKDYGRLTVMTQYYCQVMPVLEVGPHAF 181

Query: 196 FPSPKVTSTVIHFIP-HLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S V+   P    P     +  L+++ QE FG+RRKT+R + +       L + 
Sbjct: 182 KPAPKVNSAVVRLAPWKKRPYEALNIADLQRVCQEGFGQRRKTIRNTFRSFITAEQLEEI 241

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
            I  NLR ENL++  F  I N LT ++
Sbjct: 242 DINPNLRPENLTLAQFVSIANWLTTHR 268


>gi|148553332|ref|YP_001260914.1| dimethyladenosine transferase [Sphingomonas wittichii RW1]
 gi|148498522|gb|ABQ66776.1| dimethyladenosine transferase [Sphingomonas wittichii RW1]
          Length = 276

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 108/271 (39%), Positives = 160/271 (59%), Gaps = 4/271 (1%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+ +++ + +   K +GQNFLLD  +L +IA   G LDG TV E+G GPG LT+ LL 
Sbjct: 9   PPLREVIARHGLSANKALGQNFLLDGQLLDRIARVPGDLDGATVYEVGPGPGGLTRALLG 68

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GA  V+ +E+D +    L++++     RL +I  DA+K+D  +         I +NLPY
Sbjct: 69  AGA-SVVAVERDDRCLAALEELNQASGGRLRVISADAMKID--ERAEAGDGAHIASNLPY 125

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+GT L   W++ D WPP+W SLTL+FQKEV ERI A+  S  YGRL+VL  WR    + 
Sbjct: 126 NVGTALFVRWMTLDAWPPWWRSLTLMFQKEVAERIVAKPGSAAYGRLAVLAQWRATPVIA 185

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL-GG 246
            ++    F P PKV S ++H +P   P    + +++ +T  AFG+RRK LRQSLK + G 
Sbjct: 186 MNVHRSAFVPPPKVMSAIVHVVPAAQPEGASMATIETLTAAAFGQRRKMLRQSLKGVKGA 245

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
              L   GI+   RAE +++++F  +   L+
Sbjct: 246 VEALATVGIDPERRAETVTVDEFVALARALS 276


>gi|293375923|ref|ZP_06622184.1| dimethyladenosine transferase [Turicibacter sanguinis PC909]
 gi|325838710|ref|ZP_08166625.1| dimethyladenosine transferase [Turicibacter sp. HGF1]
 gi|292645445|gb|EFF63494.1| dimethyladenosine transferase [Turicibacter sanguinis PC909]
 gi|325490760|gb|EGC93067.1| dimethyladenosine transferase [Turicibacter sp. HGF1]
          Length = 291

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 144/292 (49%), Gaps = 18/292 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       + K I+  +    KK  GQNFL D NIL KI  ++   D + VIEIG G G 
Sbjct: 1   MRDIATKSNTKEIIEKHGFTFKKSFGQNFLTDTNILNKIVNAADLNDEVGVIEIGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ +    A+KV+  E D +  PIL +  + + N +++I  D LK D     E+ F   
Sbjct: 61  LTEFIA-RKAKKVVAYEIDPRLIPILAETLAPYDN-VKVIHQDILKADVASMIEEEFKDV 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             I ++ANLPY I T +L   I       ++     + QKEV ER++A   S  Y  LS+
Sbjct: 119 KHIAVVANLPYYITTPILMGLIEKKLPIDWY---VTMMQKEVAERLSANPGSKDYNALSI 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              + T+A +  ++   VF P+P V S+V+       P       +   +I   AF +RR
Sbjct: 176 AVQYYTEAKIALNVPKTVFIPAPNVDSSVVKLTKREQPAVAVENEDFFLEIVHAAFKQRR 235

Query: 235 KTLRQSLKRLGGE-------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KT++ +L +   +        LL +AGI  + R E L+IE+F  ++N+   +
Sbjct: 236 KTIQNNLNQHFNDLAKEDVTKLLEEAGIVPSRRGETLTIEEFGHLSNVFYKH 287


>gi|226946690|ref|YP_002801763.1| dimethyladenosine transferase [Azotobacter vinelandii DJ]
 gi|226721617|gb|ACO80788.1| dimethyladenosine transferase [Azotobacter vinelandii DJ]
          Length = 272

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/269 (34%), Positives = 140/269 (52%), Gaps = 7/269 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ +I  +        ++EIG G G LT+ LL  GAR + 
Sbjct: 3   ELYQHRARKRFGQNFLHDAGVIHRILRAIHPRADERLVEIGPGQGALTEGLLGSGAR-LD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE D    P+LK      P R  + Q DALK DF +       +RI+ NLPYNI T L+
Sbjct: 62  VIELDLDLIPLLKLKFGLEP-RFHLHQGDALKFDFARLCGTPHSLRIVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +           +  + QKEV ER+ A+     +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLEHAG---LIRDMHFMLQKEVVERLAAEPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +PH   P P      L++I +EAF +RRKTLR +LK L     +  
Sbjct: 178 FNPPPKVDSAIVRLVPHETLPHPARDPALLERIVREAFNQRRKTLRNTLKGLLAATDIEA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQD 281
           AG++ +LR E L +  F R+ + L    +
Sbjct: 238 AGVDGSLRPEQLDLAAFVRLADHLHARTE 266


>gi|261344781|ref|ZP_05972425.1| hypothetical protein PROVRUST_06046 [Providencia rustigianii DSM
           4541]
 gi|282567226|gb|EFB72761.1| dimethyladenosine transferase [Providencia rustigianii DSM 4541]
          Length = 269

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 98/279 (35%), Positives = 147/279 (52%), Gaps = 16/279 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I ++     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLTDQFVIDSIVDAMHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + + +    K+ V+E D+     L  +  Q  ++L IIQ DA+ VDF +       PIR+
Sbjct: 53  EPVGSR-MDKMTVVELDRDLAARLH-VHPQLKDKLTIIQQDAMTVDFGELAKQAGQPIRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+     T+      +  + QKEV  R+ A   S  +GRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLF---TFTNSISDMNFMLQKEVVNRLVAGPGSKAFGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  IPH  NP P   ++ L +IT +AF +RRKT+R 
Sbjct: 168 CNVVPVLEVPPTSFTPAPKVDSAVVRLIPHRENPYPVKDIKMLSRITTQAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           SL  L     L + GI+   RAEN+S+  +C++ N L++
Sbjct: 228 SLGDLLSVEQLIELGIDPGTRAENISVAHYCKMANYLSN 266


>gi|16759085|ref|NP_454702.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140635|ref|NP_803977.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412361|ref|YP_149436.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161612426|ref|YP_001586391.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167550727|ref|ZP_02344484.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167989953|ref|ZP_02571053.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168230359|ref|ZP_02655417.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168243503|ref|ZP_02668435.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262232|ref|ZP_02684205.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168820928|ref|ZP_02832928.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194450226|ref|YP_002044058.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470287|ref|ZP_03076271.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197249198|ref|YP_002145074.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263010|ref|ZP_03163084.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197361298|ref|YP_002140933.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198244097|ref|YP_002214042.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200389272|ref|ZP_03215884.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204926662|ref|ZP_03217864.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205351430|ref|YP_002225231.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207855603|ref|YP_002242254.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213161029|ref|ZP_03346739.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427533|ref|ZP_03360283.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213648900|ref|ZP_03378953.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|224581932|ref|YP_002635730.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238911148|ref|ZP_04654985.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289826183|ref|ZP_06545295.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|27151585|sp|Q8Z9J7|RSMA_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900478|sp|Q5PDD9|RSMA_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028815|sp|A9MYM4|RSMA_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732616|sp|B5F771|RSMA_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732617|sp|B5FI34|RSMA_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732618|sp|B5R1S8|RSMA_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732619|sp|B5RGC2|RSMA_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732620|sp|B4TJ47|RSMA_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732622|sp|B5BL27|RSMA_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807882|sp|C0Q5E7|RSMA_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|25286076|pir||AF0513 dimethyladenosine transferase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501375|emb|CAD01246.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136259|gb|AAO67826.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126618|gb|AAV76124.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161361790|gb|ABX65558.1| hypothetical protein SPAB_00115 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408530|gb|ACF68749.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194456651|gb|EDX45490.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197092773|emb|CAR58198.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197212901|gb|ACH50298.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197241265|gb|EDY23885.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197938613|gb|ACH75946.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199606370|gb|EDZ04915.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204323327|gb|EDZ08522.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205271211|emb|CAR35999.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205324333|gb|EDZ12172.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205331535|gb|EDZ18299.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205335041|gb|EDZ21805.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337400|gb|EDZ24164.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205342515|gb|EDZ29279.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348868|gb|EDZ35499.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206707406|emb|CAR31679.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224466459|gb|ACN44289.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261245323|emb|CBG23111.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991761|gb|ACY86646.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301156719|emb|CBW16193.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320084328|emb|CBY94121.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222340|gb|EFX47412.1| Dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615911|gb|EFY12828.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620696|gb|EFY17556.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623953|gb|EFY20790.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627401|gb|EFY24192.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630708|gb|EFY27472.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638072|gb|EFY34773.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640558|gb|EFY37209.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647698|gb|EFY44183.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648048|gb|EFY44515.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656920|gb|EFY53206.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657369|gb|EFY53641.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663689|gb|EFY59889.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666522|gb|EFY62700.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672319|gb|EFY68431.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676369|gb|EFY72440.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679538|gb|EFY75583.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686133|gb|EFY82117.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323128408|gb|ADX15838.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194977|gb|EFZ80163.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200114|gb|EFZ85201.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201065|gb|EFZ86134.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209462|gb|EFZ94395.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212286|gb|EFZ97110.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216591|gb|EGA01317.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222470|gb|EGA06840.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225781|gb|EGA10001.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228678|gb|EGA12807.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236708|gb|EGA20784.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239791|gb|EGA23838.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242161|gb|EGA26190.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249414|gb|EGA33330.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252251|gb|EGA36102.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256658|gb|EGA40388.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323261308|gb|EGA44895.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265512|gb|EGA49008.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271700|gb|EGA55118.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
 gi|326621786|gb|EGE28131.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326626453|gb|EGE32796.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332987042|gb|AEF06025.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 273

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L     L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270


>gi|218547501|ref|YP_002381292.1| dimethyladenosine transferase [Escherichia fergusonii ATCC 35469]
 gi|226732582|sp|B7LVU5|RSMA_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218355042|emb|CAQ87648.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia fergusonii ATCC 35469]
          Length = 273

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|283783840|ref|YP_003363705.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl (rRNA)
           dimethyltransferase) [Citrobacter rodentium ICC168]
 gi|282947294|emb|CBG86839.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl (rRNA)
           dimethyltransferase) [Citrobacter rodentium ICC168]
          Length = 273

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +     R + VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERLDR-LTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L + G++  +RAEN+S+  +CR+ N L +N  +
Sbjct: 228 SLGNLFSVEVLTELGVDPAMRAENISVAQYCRMANYLAENAPL 270


>gi|257868862|ref|ZP_05648515.1| dimethyladenosine transferase [Enterococcus gallinarum EG2]
 gi|257803026|gb|EEV31848.1| dimethyladenosine transferase [Enterococcus gallinarum EG2]
          Length = 300

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/289 (30%), Positives = 148/289 (51%), Gaps = 20/289 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL+ +    KK +GQNFL + NIL+KI  ++   D   VIE+G G G LT+ L 
Sbjct: 10  PSRTKEILAKHGFTFKKSLGQNFLTEPNILRKIVATAAIDDQTNVIEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              AR+V+  E D +  P+L+D  + + N +++I  D L+ D      + F    PI+++
Sbjct: 70  KH-ARQVLAFEIDDRLIPVLQDTLAPYSN-IQVIHQDVLQADLSTMIREAFTDERPIKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++ +       + + ++ QKEV +RI+A   +  YG LS+   +  
Sbjct: 128 ANLPYYITTPIMMHFLESQAP---IQEMVVMMQKEVADRISAVPGTKAYGSLSIAVQYYM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           +A + F +   VF P P V S ++       P       +   K+T+ AF  RRKTL  +
Sbjct: 185 EAELAFIVPKTVFVPQPNVDSAILKLTRRATPAVEVTDEKEFFKLTKAAFQLRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           L+   G++          L  + I+   R E LS+ +F R++N +  ++
Sbjct: 245 LQNSYGKDEKTKEWLKASLAASEIDPTRRGETLSLAEFARLSNEMLAHK 293


>gi|218693523|ref|YP_002401190.1| dimethyladenosine transferase [Escherichia coli 55989]
 gi|254807867|sp|B7L4H4|RSMA_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218350255|emb|CAU95938.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli 55989]
          Length = 273

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSAEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|331265645|ref|YP_004325275.1| dimethyladenosine transferase [Streptococcus oralis Uo5]
 gi|326682317|emb|CBY99934.1| dimethyladenosine transferase [Streptococcus oralis Uo5]
          Length = 290

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 152/292 (52%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPG 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +   +P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPDPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+E+F  +++ L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLSDALK 286


>gi|271502083|ref|YP_003335109.1| dimethyladenosine transferase [Dickeya dadantii Ech586]
 gi|270345638|gb|ACZ78403.1| dimethyladenosine transferase [Dickeya dadantii Ech586]
          Length = 272

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/280 (34%), Positives = 139/280 (49%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPQPGQAMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
             +      +  V+E D+     L ++     ++L IIQ DA+ VDF         P+R+
Sbjct: 53  IPVGER-INRFTVVELDRDLAARL-EVHPTLKDKLTIIQQDAMTVDFAALSQQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S          +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IHDMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIP-CCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH  +P P      L +IT EAF +RRKTLR 
Sbjct: 168 CQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTASPYPAVDTRILSRITTEAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L     L    ++ N RAEN++I  +CR+   LT +
Sbjct: 228 SLGNLFTPEQLTALEVDPNTRAENVTIAQYCRLAEWLTAH 267


>gi|323950949|gb|EGB46826.1| dimethyladenosine transferase [Escherichia coli H252]
          Length = 273

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPIGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|157156598|ref|YP_001461223.1| dimethyladenosine transferase [Escherichia coli E24377A]
 gi|293403126|ref|ZP_06647223.1| dimethyladenosine transferase [Escherichia coli FVEC1412]
 gi|300900925|ref|ZP_07119060.1| dimethyladenosine transferase [Escherichia coli MS 198-1]
 gi|301019759|ref|ZP_07183905.1| dimethyladenosine transferase [Escherichia coli MS 69-1]
 gi|331681437|ref|ZP_08382074.1| dimethyladenosine transferase [Escherichia coli H299]
 gi|166987692|sp|A7ZHE4|RSMA_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157078628|gb|ABV18336.1| dimethyladenosine transferase [Escherichia coli E24377A]
 gi|291430041|gb|EFF03055.1| dimethyladenosine transferase [Escherichia coli FVEC1412]
 gi|300355588|gb|EFJ71458.1| dimethyladenosine transferase [Escherichia coli MS 198-1]
 gi|300399096|gb|EFJ82634.1| dimethyladenosine transferase [Escherichia coli MS 69-1]
 gi|331081658|gb|EGI52819.1| dimethyladenosine transferase [Escherichia coli H299]
          Length = 273

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|192361991|ref|YP_001981369.1| dimethyladenosine transferase [Cellvibrio japonicus Ueda107]
 gi|190688156|gb|ACE85834.1| dimethyladenosine transferase [Cellvibrio japonicus Ueda107]
          Length = 287

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/273 (34%), Positives = 147/273 (53%), Gaps = 8/273 (2%)

Query: 9   SLKTILSHYK-IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           ++K +L+       +K  GQNFL+D  I++ I  +        V+EIG G G +T+ LL 
Sbjct: 6   AMKKLLNSENTHKARKRFGQNFLVDHGIIRDIVRAVHPQKTDVVVEIGPGKGAITE-LLA 64

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                + VIE D+   P LK    +HPN  ++ Q DAL+ DF +      P+RI+ NLPY
Sbjct: 65  DACDNLSVIELDRDLVPWLKVKFEKHPN-FQLFQADALRFDFRQLIKPGQPLRIVGNLPY 123

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI T L+F+ +         + +  + QKEV +R+ A+  S  YGRL ++  +      +
Sbjct: 124 NISTPLIFHLLGYANQ---VKDMHFMLQKEVVKRMAAEPGSGAYGRLGIMVQYFCAVENL 180

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG 245
           F++ P  F P PKV S ++  +PH         L++L+ +   AF +RRKTLR SLK L 
Sbjct: 181 FEVPPTSFDPPPKVDSAIVRLVPHQQLPYLANNLKTLETLVNVAFQQRRKTLRNSLKSLL 240

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               L    ++ NLR EN+S+ ++ +I+N+L D
Sbjct: 241 SMAQLDSLPVDLNLRPENISLAEYVQISNLLGD 273


>gi|90020384|ref|YP_526211.1| dimethyladenosine transferase [Saccharophagus degradans 2-40]
 gi|119365059|sp|Q21MT0|RSMA_SACD2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|89949984|gb|ABD79999.1| dimethyladenosine transferase [Saccharophagus degradans 2-40]
          Length = 268

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/262 (35%), Positives = 136/262 (51%), Gaps = 7/262 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
                +K  GQNFL D  I+  I  S G      ++EIG G G +T  L+      + V+
Sbjct: 10  QGHRARKRFGQNFLEDQGIINAIVRSIGPKASDNLVEIGPGKGAITAQLIESCP-SMQVV 68

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   PIL    + + N   I Q DALK DF +      P+R++ NLPYNI T L+F+
Sbjct: 69  ELDRDLIPILLAQFAIY-NDFRIHQTDALKFDFGQLATPERPLRVVGNLPYNISTPLIFH 127

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S   +      +  + QKEV  R+ A     +YGRLSV+T +  +   +F++ P  F 
Sbjct: 128 LLS---FGELIADMHFMLQKEVVLRLAAGPGDKNYGRLSVMTQYVCQVENLFEVPPECFN 184

Query: 197 PSPKVTSTVIHFIPHL-NPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S ++   P+   P      + L K+ + AF +RRKTLR +LK L  E  L    
Sbjct: 185 PRPKVDSAIVRLTPYRTQPFVAAHPDKLAKLVKTAFAQRRKTLRNNLKNLDEELDLEALD 244

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           I+   RAE+LS+E++  ++N L
Sbjct: 245 IDLTRRAESLSLEEYVNLSNTL 266


>gi|262369199|ref|ZP_06062527.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase
           [Acinetobacter johnsonii SH046]
 gi|262315267|gb|EEY96306.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase
           [Acinetobacter johnsonii SH046]
          Length = 270

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/259 (37%), Positives = 136/259 (52%), Gaps = 7/259 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E
Sbjct: 13  GHHTRKRFGQNFLHDQRVIAKIVRSVAPRSGDNIVEIGPGLAALTSPLIGEC-DALTVVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L      HP RL II+ DALK DF   F    P+R++ NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLPGRV-PHPERLTIIETDALKYDFTNLFEDGRPLRVVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV +RITA  NS  YGRLSV+  +  K T +F++ P  F P
Sbjct: 131 LE---FGDKVKDMHFMLQKEVVDRITASPNSKEYGRLSVMIQYFCKPTFLFEVPPGSFNP 187

Query: 198 SPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKVTS V    P+   PI     ++L ++    F +RRKTLR SLK +  E+   QAG+
Sbjct: 188 PPKVTSAVFRLEPYAVKPIVAKNEKALARLVSHVFTQRRKTLRNSLKGMLVEDGFEQAGV 247

Query: 256 ETNLRAENLSIEDFCRITN 274
           +   R E L++  F  + +
Sbjct: 248 DPMARPETLTLAQFVALAD 266


>gi|168234845|ref|ZP_02659903.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734867|ref|YP_002113107.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|226732623|sp|B4TWT6|RSMA_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|194710369|gb|ACF89590.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291958|gb|EDY31308.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 273

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSTQLGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L     L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270


>gi|333011435|gb|EGK30849.1| dimethyladenosine transferase [Shigella flexneri K-272]
 gi|333021674|gb|EGK40923.1| dimethyladenosine transferase [Shigella flexneri K-227]
          Length = 273

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENTPL 270


>gi|191169146|ref|ZP_03030905.1| dimethyladenosine transferase [Escherichia coli B7A]
 gi|190900821|gb|EDV60611.1| dimethyladenosine transferase [Escherichia coli B7A]
          Length = 273

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAAHLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|218687929|ref|YP_002396141.1| dimethyladenosine transferase [Escherichia coli ED1a]
 gi|254807868|sp|B7MNR0|RSMA_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218425493|emb|CAR06275.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli ED1a]
          Length = 273

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSAEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|152968629|ref|YP_001333738.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893024|ref|YP_002917758.1| dimethyladenosine transferase [Klebsiella pneumoniae NTUH-K2044]
 gi|262044916|ref|ZP_06017958.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330009280|ref|ZP_08306496.1| dimethyladenosine transferase [Klebsiella sp. MS 92-3]
 gi|166221672|sp|A6T4I7|RSMA_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|150953478|gb|ABR75508.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545340|dbj|BAH61691.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|238774027|dbj|BAH66524.1| dimethyladenosine transferase [Klebsiella pneumoniae NTUH-K2044]
 gi|238774059|dbj|BAH66555.1| dimethyladenosine transferase [Klebsiella pneumoniae]
 gi|259037643|gb|EEW38872.1| dimethyladenosine transferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328534857|gb|EGF61399.1| dimethyladenosine transferase [Klebsiella sp. MS 92-3]
          Length = 273

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 144/280 (51%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC-LESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L    +L + GI+  +RAEN+S+  +C + N L+DN
Sbjct: 228 SLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDN 267


>gi|332358479|gb|EGJ36304.1| dimethyladenosine transferase [Streptococcus sanguinis SK49]
          Length = 290

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAES-AVEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPAAEVQDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERADLSPSVRGEALSLEEFARLADALKS 287


>gi|238917939|ref|YP_002931456.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750]
 gi|238873299|gb|ACR73009.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750]
          Length = 293

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 152/288 (52%), Gaps = 17/288 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N ++++  +L+ Y    KK  GQNFL+D N+++KI   +G      V+E+G G G 
Sbjct: 10  MHLGNPTNTI-AVLNRYGFDFKKKFGQNFLIDENVVEKIVREAGVTKDDFVVEVGPGIGT 68

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117
           +TQ+L    AR+V+ +E D++  PIL + +  + + + +I +D LK+D +K  +      
Sbjct: 69  MTQILCE-NAREVVAVEIDKKLIPILTEDTLSYYDNVTVINEDILKLDIKKLADEKNEGR 127

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T ++     +       +S+T++ QKEV +R+     +  YG LS+ 
Sbjct: 128 PIKVVANLPYYITTPIIMGLFESHVP---LDSITIMVQKEVADRMQCGPGTKDYGALSLA 184

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESL-KKITQEAFGKRRK 235
             +  K  ++ ++    F P P V S VI        P+    E L  KI + +F +RRK
Sbjct: 185 VQFYAKPKVVLNVPASCFMPRPNVDSAVIRLERFKTPPVDVKNEHLMFKIIRASFNQRRK 244

Query: 236 TLRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           T+  S+   G         N L   G+   +R E L++E F +++N+L
Sbjct: 245 TMLNSVGNSGIGITKEALTNALETMGLPLTIRGEALTLEQFAQLSNLL 292


>gi|148543450|ref|YP_001270820.1| dimethyladenosine transferase [Lactobacillus reuteri DSM 20016]
 gi|184152859|ref|YP_001841200.1| dimethyladenosine transferase [Lactobacillus reuteri JCM 1112]
 gi|227363600|ref|ZP_03847717.1| dimethyladenosine transferase [Lactobacillus reuteri MM2-3]
 gi|325681794|ref|ZP_08161313.1| dimethyladenosine transferase [Lactobacillus reuteri MM4-1A]
 gi|166987695|sp|A5VI09|RSMA_LACRD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732591|sp|B2G5I8|RSMA_LACRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|148530484|gb|ABQ82483.1| dimethyladenosine transferase [Lactobacillus reuteri DSM 20016]
 gi|183224203|dbj|BAG24720.1| dimethyladenosine transferase [Lactobacillus reuteri JCM 1112]
 gi|227071396|gb|EEI09702.1| dimethyladenosine transferase [Lactobacillus reuteri MM2-3]
 gi|324978885|gb|EGC15833.1| dimethyladenosine transferase [Lactobacillus reuteri MM4-1A]
          Length = 297

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 159/299 (53%), Gaps = 27/299 (9%)

Query: 3   MNNKS-----HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M+N          + I+  Y I  KK  GQNFL DLN+LK I E++       VIEIG G
Sbjct: 1   MSNSPEIGSRTRTRAIMEKYGIRTKKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---- 113
            G LT+ L    A +V+ +E DQ   P+LK++ S + + +++I  D L+ +  +      
Sbjct: 61  IGALTEQLA-QAAGEVLALEIDQDLIPVLKEVLSPYDD-VKVINQDVLQANLPELIKKEF 118

Query: 114 -NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
            + S PI+++ANLPY I + +L N +++   P  W ++ ++ QKEV +R+TA+  +  YG
Sbjct: 119 KDPSRPIKVVANLPYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYG 175

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEA 229
            L++   ++ +A + FD+S  VF P+P V S ++   P  NP+P      + L    +  
Sbjct: 176 ALTLAIEYQMQAKIAFDVSRKVFVPAPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGC 235

Query: 230 FGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           F  RRK+L  +L+ + G++         +L+Q  I   +R E L++E F  + N L   
Sbjct: 236 FAHRRKSLWNNLQSVIGKDPAAKEKMTAVLNQLDISPQIRPEKLTLEQFIELANALHQQ 294


>gi|322375823|ref|ZP_08050334.1| dimethyladenosine transferase [Streptococcus sp. C300]
 gi|321279091|gb|EFX56133.1| dimethyladenosine transferase [Streptococcus sp. C300]
          Length = 290

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDEQFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+E+F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTDEVKEKLTKALDQAGLSPSVRGEALSLEEFASLADALK 286


>gi|289167168|ref|YP_003445435.1| dimethyladenosine transferase [Streptococcus mitis B6]
 gi|288906733|emb|CBJ21567.1| dimethyladenosine transferase [Streptococcus mitis B6]
          Length = 290

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+E+F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLADALK 286


>gi|54307616|ref|YP_128636.1| dimethyladenosine transferase [Photobacterium profundum SS9]
 gi|46912039|emb|CAG18834.1| putative dimethyladenosine transferase [Photobacterium profundum
           SS9]
          Length = 286

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/270 (33%), Positives = 138/270 (51%), Gaps = 7/270 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  S   L G  ++EIG G G LT+ +  L   K  V
Sbjct: 22  HLGHRARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGALTEPVGRL-VDKFSV 80

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L+       ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 81  IELDRDLAKRLRHH-PDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +  +        E +  + QKEV  R+ A      YGRL+V+  + ++ T + ++ P  F
Sbjct: 140 HLFTFHEH---VEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESF 196

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S V+   P+   P PC  L+ L ++ +E F +RRKT+R   K L     L   
Sbjct: 197 TPAPKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEDL 256

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283
           G+   LR EN++++ F ++ N L  N   A
Sbjct: 257 GVNPGLRPENITLQQFVKMANWLDANHQNA 286


>gi|260912726|ref|ZP_05919212.1| dimethyladenosine transferase [Pasteurella dagmatis ATCC 43325]
 gi|260633104|gb|EEX51269.1| dimethyladenosine transferase [Pasteurella dagmatis ATCC 43325]
          Length = 288

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 141/273 (51%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D N+++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDDNVIQGIVSAIYPQKDQFLVEIGPGLGALTEPVGDL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H +++ +I+ DA++ DF       K    +  +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLH-HKITVIETDAMQFDFGQLYQEAKLAEKNQKMRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHDC---IQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  +PH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPTAFKPAPKVDSAVVRLVPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFT 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L + GI+   RAENLSI D+ R+ N L DN
Sbjct: 240 AEQLTELGIDLTARAENLSIADYARLANWLADN 272


>gi|167622855|ref|YP_001673149.1| dimethyladenosine transferase [Shewanella halifaxensis HAW-EB4]
 gi|189028817|sp|B0TV52|RSMA_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|167352877|gb|ABZ75490.1| dimethyladenosine transferase [Shewanella halifaxensis HAW-EB4]
          Length = 267

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 145/280 (51%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D N++ +I  +    +   ++EIG G   LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +   G  K+IV+E D+     L+       ++LEI Q DALK DF +       +++ 
Sbjct: 53  EPVA-SGIDKLIVVELDKDLVERLQ-THPVLKDKLEIHQGDALKFDFNQLVREDKQMKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+           E++  + QKEV  R++A   +  YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFEFAQH---IENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ P  F P PKV S V+  +P+ N P PC  ++ L+ +T  AF  RRKTLR +
Sbjct: 168 QVMPVLEVPPGCFTPPPKVDSAVVRLVPYKNKPWPCKDVDLLRNLTTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK+L  +    + GI+  LR E + ++ +  + N + D +
Sbjct: 228 LKQLLSDEDFAELGIDATLRPEQIRVDQYVAMANHVFDKK 267


>gi|270292088|ref|ZP_06198303.1| dimethyladenosine transferase [Streptococcus sp. M143]
 gi|270279616|gb|EFA25458.1| dimethyladenosine transferase [Streptococcus sp. M143]
          Length = 290

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 151/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPE 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +   +P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPDPAVAVEDEQFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+E+F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEIKDKLTKALDQAGLSPSVRGEALSLEEFASLADALK 286


>gi|238922667|ref|YP_002936180.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656]
 gi|238874339|gb|ACR74046.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656]
          Length = 288

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/287 (33%), Positives = 153/287 (53%), Gaps = 19/287 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N  +++  +L  Y    +K  GQNFL+D  IL++I +S+G      ++EIG G G +T
Sbjct: 4   LGNPKNTI-EVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    AR+VI +E D    PILKD  S++ N +++I DD LKVD       +N   PI
Sbjct: 63  QYLCES-ARQVIAVEIDTNLIPILKDTLSEYDN-VKVINDDILKVDINALAEEYNNGKPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +S+T++ QKEV +R+ A      YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFESHVP---IDSITIMVQKEVADRMQAAPGKKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           + +   ++ ++ P  F P PKV S+VI    +  P+      + + KI + +F +RRKTL
Sbjct: 178 YYSHPEIVVNVPPSCFMPQPKVGSSVISLKRYEKPVVDVEDEKLMFKIIRASFNQRRKTL 237

Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              L   GG        +  +   G+  N+R E LS+  F +++NI+
Sbjct: 238 ANGLNNFGGMGLTKEQIQQSIEALGVPVNVRGEALSLAQFAQLSNII 284


>gi|16128045|ref|NP_414593.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|74310670|ref|YP_309089.1| dimethyladenosine transferase [Shigella sonnei Ss046]
 gi|82542657|ref|YP_406604.1| dimethyladenosine transferase [Shigella boydii Sb227]
 gi|89106935|ref|AP_000715.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli str. K-12 substr. W3110]
 gi|110804117|ref|YP_687637.1| dimethyladenosine transferase [Shigella flexneri 5 str. 8401]
 gi|157159522|ref|YP_001456840.1| dimethyladenosine transferase [Escherichia coli HS]
 gi|170021591|ref|YP_001726545.1| dimethyladenosine transferase [Escherichia coli ATCC 8739]
 gi|170079714|ref|YP_001729034.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170683255|ref|YP_001742172.1| dimethyladenosine transferase [Escherichia coli SMS-3-5]
 gi|188492783|ref|ZP_03000053.1| dimethyladenosine transferase [Escherichia coli 53638]
 gi|193066225|ref|ZP_03047278.1| dimethyladenosine transferase [Escherichia coli E22]
 gi|193070981|ref|ZP_03051910.1| dimethyladenosine transferase [Escherichia coli E110019]
 gi|194429859|ref|ZP_03062371.1| dimethyladenosine transferase [Escherichia coli B171]
 gi|194434556|ref|ZP_03066814.1| dimethyladenosine transferase [Shigella dysenteriae 1012]
 gi|194439700|ref|ZP_03071770.1| dimethyladenosine transferase [Escherichia coli 101-1]
 gi|218552636|ref|YP_002385549.1| dimethyladenosine transferase [Escherichia coli IAI1]
 gi|218698473|ref|YP_002406102.1| dimethyladenosine transferase [Escherichia coli IAI39]
 gi|238899456|ref|YP_002925252.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli BW2952]
 gi|253774917|ref|YP_003037748.1| dimethyladenosine transferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037468|ref|ZP_04871545.1| methyltransferase [Escherichia sp. 1_1_43]
 gi|254160176|ref|YP_003043284.1| dimethyladenosine transferase [Escherichia coli B str. REL606]
 gi|256020109|ref|ZP_05433974.1| dimethyladenosine transferase [Shigella sp. D9]
 gi|256025368|ref|ZP_05439233.1| dimethyladenosine transferase [Escherichia sp. 4_1_40B]
 gi|260842288|ref|YP_003220066.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|260853265|ref|YP_003227156.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|260866205|ref|YP_003232607.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|293408146|ref|ZP_06651986.1| dimethyladenosine transferase [Escherichia coli B354]
 gi|293417929|ref|ZP_06660551.1| dimethyladenosine transferase [Escherichia coli B185]
 gi|293476715|ref|ZP_06665123.1| dimethyladenosine transferase [Escherichia coli B088]
 gi|300816088|ref|ZP_07096311.1| dimethyladenosine transferase [Escherichia coli MS 107-1]
 gi|300821944|ref|ZP_07102088.1| dimethyladenosine transferase [Escherichia coli MS 119-7]
 gi|300905455|ref|ZP_07123221.1| dimethyladenosine transferase [Escherichia coli MS 84-1]
 gi|300928650|ref|ZP_07144169.1| dimethyladenosine transferase [Escherichia coli MS 187-1]
 gi|300939468|ref|ZP_07154130.1| dimethyladenosine transferase [Escherichia coli MS 21-1]
 gi|300948655|ref|ZP_07162739.1| dimethyladenosine transferase [Escherichia coli MS 116-1]
 gi|300956981|ref|ZP_07169233.1| dimethyladenosine transferase [Escherichia coli MS 175-1]
 gi|301305057|ref|ZP_07211158.1| dimethyladenosine transferase [Escherichia coli MS 124-1]
 gi|301648382|ref|ZP_07248118.1| dimethyladenosine transferase [Escherichia coli MS 146-1]
 gi|307136654|ref|ZP_07496010.1| dimethyladenosine transferase [Escherichia coli H736]
 gi|307311495|ref|ZP_07591137.1| dimethyladenosine transferase [Escherichia coli W]
 gi|309796040|ref|ZP_07690452.1| dimethyladenosine transferase [Escherichia coli MS 145-7]
 gi|331640503|ref|ZP_08341651.1| dimethyladenosine transferase [Escherichia coli H736]
 gi|331661422|ref|ZP_08362346.1| dimethyladenosine transferase [Escherichia coli TA143]
 gi|331666288|ref|ZP_08367169.1| dimethyladenosine transferase [Escherichia coli TA271]
 gi|331671571|ref|ZP_08372369.1| dimethyladenosine transferase [Escherichia coli TA280]
 gi|331680624|ref|ZP_08381283.1| dimethyladenosine transferase [Escherichia coli H591]
 gi|332281262|ref|ZP_08393675.1| dimethyladenosine transferase [Shigella sp. D9]
 gi|125699|sp|P06992|RSMA_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=High level kasugamycin
           resistance protein ksgA; AltName: Full=Kasugamycin
           dimethyltransferase; AltName:
           Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase
 gi|119365842|sp|Q326I2|RSMA_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365844|sp|Q3Z5V8|RSMA_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|123147300|sp|Q0T8E4|RSMA_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166987693|sp|A7ZW03|RSMA_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028807|sp|B1IRC5|RSMA_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732575|sp|B7NHF7|RSMA_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732576|sp|B7M0E8|RSMA_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732577|sp|B1XC52|RSMA_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732580|sp|B1LFY7|RSMA_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|259494249|sp|C4ZPX7|RSMA_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|40917|emb|CAA28417.1| unnamed protein product [Escherichia coli]
 gi|146571|gb|AAA24049.1| methyltransferase (ksgA) [Escherichia coli]
 gi|1786236|gb|AAC73162.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|73854147|gb|AAZ86854.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Shigella sonnei Ss046]
 gi|81244068|gb|ABB64776.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Shigella boydii Sb227]
 gi|85674303|dbj|BAE76038.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli str. K12 substr. W3110]
 gi|110613665|gb|ABF02332.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Shigella flexneri 5 str. 8401]
 gi|157065202|gb|ABV04457.1| dimethyladenosine transferase [Escherichia coli HS]
 gi|169756519|gb|ACA79218.1| dimethyladenosine transferase [Escherichia coli ATCC 8739]
 gi|169887549|gb|ACB01256.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170520973|gb|ACB19151.1| dimethyladenosine transferase [Escherichia coli SMS-3-5]
 gi|188487982|gb|EDU63085.1| dimethyladenosine transferase [Escherichia coli 53638]
 gi|192926150|gb|EDV80791.1| dimethyladenosine transferase [Escherichia coli E22]
 gi|192955711|gb|EDV86185.1| dimethyladenosine transferase [Escherichia coli E110019]
 gi|194412078|gb|EDX28388.1| dimethyladenosine transferase [Escherichia coli B171]
 gi|194417209|gb|EDX33320.1| dimethyladenosine transferase [Shigella dysenteriae 1012]
 gi|194421385|gb|EDX37402.1| dimethyladenosine transferase [Escherichia coli 101-1]
 gi|218359404|emb|CAQ96943.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli IAI1]
 gi|218368459|emb|CAR16195.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli IAI39]
 gi|226840574|gb|EEH72576.1| methyltransferase [Escherichia sp. 1_1_43]
 gi|238863510|gb|ACR65508.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli BW2952]
 gi|242375890|emb|CAQ30571.1| 16S rRNA m[6][2]A1518,m[6][2]A1519 dimethyltransferase [Escherichia
           coli BL21(DE3)]
 gi|253325961|gb|ACT30563.1| dimethyladenosine transferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972077|gb|ACT37748.1| dimethyladenosine transferase [Escherichia coli B str. REL606]
 gi|253976286|gb|ACT41956.1| dimethyladenosine transferase [Escherichia coli BL21(DE3)]
 gi|257751914|dbj|BAI23416.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|257757435|dbj|BAI28932.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|257762561|dbj|BAI34056.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|260450740|gb|ACX41162.1| dimethyladenosine transferase [Escherichia coli DH1]
 gi|284919834|emb|CBG32889.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl (rRNA)
           dimethyltransferase) [Escherichia coli 042]
 gi|291321168|gb|EFE60610.1| dimethyladenosine transferase [Escherichia coli B088]
 gi|291430647|gb|EFF03645.1| dimethyladenosine transferase [Escherichia coli B185]
 gi|291472397|gb|EFF14879.1| dimethyladenosine transferase [Escherichia coli B354]
 gi|300316271|gb|EFJ66055.1| dimethyladenosine transferase [Escherichia coli MS 175-1]
 gi|300402671|gb|EFJ86209.1| dimethyladenosine transferase [Escherichia coli MS 84-1]
 gi|300451881|gb|EFK15501.1| dimethyladenosine transferase [Escherichia coli MS 116-1]
 gi|300455689|gb|EFK19182.1| dimethyladenosine transferase [Escherichia coli MS 21-1]
 gi|300463319|gb|EFK26812.1| dimethyladenosine transferase [Escherichia coli MS 187-1]
 gi|300525544|gb|EFK46613.1| dimethyladenosine transferase [Escherichia coli MS 119-7]
 gi|300531295|gb|EFK52357.1| dimethyladenosine transferase [Escherichia coli MS 107-1]
 gi|300839664|gb|EFK67424.1| dimethyladenosine transferase [Escherichia coli MS 124-1]
 gi|301073517|gb|EFK88323.1| dimethyladenosine transferase [Escherichia coli MS 146-1]
 gi|306908474|gb|EFN38972.1| dimethyladenosine transferase [Escherichia coli W]
 gi|308120282|gb|EFO57544.1| dimethyladenosine transferase [Escherichia coli MS 145-7]
 gi|309700264|emb|CBI99552.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl (rRNA)
           dimethyltransferase) [Escherichia coli ETEC H10407]
 gi|315059277|gb|ADT73604.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli W]
 gi|315134747|dbj|BAJ41906.1| dimethyladenosine transferase [Escherichia coli DH1]
 gi|315255673|gb|EFU35641.1| dimethyladenosine transferase [Escherichia coli MS 85-1]
 gi|315616172|gb|EFU96791.1| dimethyladenosine transferase [Escherichia coli 3431]
 gi|320172861|gb|EFW48093.1| Dimethyladenosine transferase [Shigella dysenteriae CDC 74-1112]
 gi|320182964|gb|EFW57832.1| Dimethyladenosine transferase [Shigella flexneri CDC 796-83]
 gi|320200429|gb|EFW75015.1| Dimethyladenosine transferase [Escherichia coli EC4100B]
 gi|323157886|gb|EFZ43989.1| dimethyladenosine transferase [Escherichia coli EPECa14]
 gi|323160077|gb|EFZ46039.1| dimethyladenosine transferase [Escherichia coli E128010]
 gi|323166103|gb|EFZ51882.1| dimethyladenosine transferase [Shigella sonnei 53G]
 gi|323171211|gb|EFZ56859.1| dimethyladenosine transferase [Escherichia coli LT-68]
 gi|323176360|gb|EFZ61952.1| dimethyladenosine transferase [Escherichia coli 1180]
 gi|323380166|gb|ADX52434.1| dimethyladenosine transferase [Escherichia coli KO11]
 gi|323935104|gb|EGB31471.1| dimethyladenosine transferase [Escherichia coli E1520]
 gi|323939727|gb|EGB35929.1| dimethyladenosine transferase [Escherichia coli E482]
 gi|323960000|gb|EGB55646.1| dimethyladenosine transferase [Escherichia coli H489]
 gi|323970725|gb|EGB65979.1| dimethyladenosine transferase [Escherichia coli TA007]
 gi|323975781|gb|EGB70877.1| dimethyladenosine transferase [Escherichia coli TW10509]
 gi|324017680|gb|EGB86899.1| dimethyladenosine transferase [Escherichia coli MS 117-3]
 gi|324118403|gb|EGC12297.1| dimethyladenosine transferase [Escherichia coli E1167]
 gi|331040249|gb|EGI12456.1| dimethyladenosine transferase [Escherichia coli H736]
 gi|331061337|gb|EGI33300.1| dimethyladenosine transferase [Escherichia coli TA143]
 gi|331066499|gb|EGI38376.1| dimethyladenosine transferase [Escherichia coli TA271]
 gi|331071416|gb|EGI42773.1| dimethyladenosine transferase [Escherichia coli TA280]
 gi|331072087|gb|EGI43423.1| dimethyladenosine transferase [Escherichia coli H591]
 gi|332095340|gb|EGJ00363.1| dimethyladenosine transferase [Shigella boydii 5216-82]
 gi|332097801|gb|EGJ02774.1| dimethyladenosine transferase [Shigella dysenteriae 155-74]
 gi|332098860|gb|EGJ03811.1| dimethyladenosine transferase [Shigella boydii 3594-74]
 gi|332103614|gb|EGJ06960.1| dimethyladenosine transferase [Shigella sp. D9]
 gi|332341383|gb|AEE54717.1| dimethyladenosine transferase KsgA [Escherichia coli UMNK88]
 gi|332762612|gb|EGJ92877.1| dimethyladenosine transferase [Shigella flexneri 4343-70]
 gi|333009061|gb|EGK28517.1| dimethyladenosine transferase [Shigella flexneri K-218]
 gi|224747|prf||1112172A methyltransferase
          Length = 273

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|323964849|gb|EGB60316.1| dimethyladenosine transferase [Escherichia coli M863]
 gi|327255031|gb|EGE66634.1| dimethyladenosine transferase [Escherichia coli STEC_7v]
          Length = 273

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELATKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|24111497|ref|NP_706007.1| dimethyladenosine transferase [Shigella flexneri 2a str. 301]
 gi|30061618|ref|NP_835789.1| dimethyladenosine transferase [Shigella flexneri 2a str. 2457T]
 gi|62900584|sp|Q83MG8|RSMA_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|24050250|gb|AAN41714.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase
           [Shigella flexneri 2a str. 301]
 gi|30039860|gb|AAP15594.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase
           [Shigella flexneri 2a str. 2457T]
 gi|281599412|gb|ADA72396.1| Dimethyladenosine transferase [Shigella flexneri 2002017]
 gi|313646570|gb|EFS11031.1| dimethyladenosine transferase [Shigella flexneri 2a str. 2457T]
 gi|332762369|gb|EGJ92636.1| dimethyladenosine transferase [Shigella flexneri 2747-71]
 gi|332764894|gb|EGJ95122.1| dimethyladenosine transferase [Shigella flexneri K-671]
 gi|332768840|gb|EGJ99019.1| dimethyladenosine transferase [Shigella flexneri 2930-71]
 gi|333022380|gb|EGK41618.1| dimethyladenosine transferase [Shigella flexneri K-304]
          Length = 273

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|320539608|ref|ZP_08039272.1| dimethyladenosine transferase [Serratia symbiotica str. Tucson]
 gi|320030220|gb|EFW12235.1| dimethyladenosine transferase [Serratia symbiotica str. Tucson]
          Length = 272

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 97/280 (34%), Positives = 143/280 (51%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  +IEIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLTDQFVIDSIVSAIHPQPGEAIIEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +     R + VIE D+     L + SS   ++L I Q DA+ V+F +       P+R+
Sbjct: 53  EPVGARMDR-MTVIELDRDLAAWLANHSS-LKDKLTIYQQDAMTVNFAEMAKQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+      +      +  + QKEV  R+ A  +S  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLF---IYTQEIRDMHFMLQKEVVNRLVAGPDSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P+PKV S V+  +PH         +  L +IT +AF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPTSFTPAPKVDSAVVRLVPHSVMPNPVSDVHMLSRITTQAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L     L + GI  +LRAEN+S+  +C++ N L+DN
Sbjct: 228 SLGDLFTPVQLMELGINASLRAENISVAQYCKLANWLSDN 267


>gi|327468444|gb|EGF13929.1| dimethyladenosine transferase [Streptococcus sanguinis SK330]
          Length = 290

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKSYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSCFGKSEETKDKLTAALERAELSPSVRGEALSLEEFARLADALKS 287


>gi|212636813|ref|YP_002313338.1| dimethyladenosine transferase [Shewanella piezotolerans WP3]
 gi|226732624|sp|B8CSX5|RSMA_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|212558297|gb|ACJ30751.1| Dimethyladenosine transferase [Shewanella piezotolerans WP3]
          Length = 270

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 146/280 (52%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D N++ +I  +    +   ++EIG G   LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDENVINRIVGAISPDNEHVMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +   G  K+ V+E D+     LK       ++LEI Q DAL  DF++       +++ 
Sbjct: 53  EPVA-SGIDKLTVVELDKDLVERLK-THPTLKDKLEIHQGDALNFDFKQLVREDMQMKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+      +  + E++  + QKEV  R++A   +  YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFE---FAQYIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ P  F P PKV S V+  +P+   P PC  +E L+ +T  AF  RRKTLR +
Sbjct: 168 QVMPVLEVPPGCFTPPPKVDSAVVRLVPYKTKPFPCKDVEVLRHLTTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK +  ++   Q  I++ LR E +S++ +  + N+  D Q
Sbjct: 228 LKHMLSDDEFAQLEIDSTLRPEQISVQQYVAMANLFIDKQ 267


>gi|161504790|ref|YP_001571902.1| dimethyladenosine transferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189028814|sp|A9MQG2|RSMA_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|160866137|gb|ABX22760.1| hypothetical protein SARI_02914 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 273

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   +  + P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLGVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L     L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270


>gi|332365863|gb|EGJ43620.1| dimethyladenosine transferase [Streptococcus sanguinis SK355]
          Length = 290

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSYFGKSEETKGKLSAALERADLSPSVRGEALSLEEFARLADALKS 287


>gi|323350567|ref|ZP_08086229.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66]
 gi|322123249|gb|EFX94934.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66]
          Length = 290

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVEVQDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADALKS 287


>gi|209917243|ref|YP_002291327.1| dimethyladenosine transferase [Escherichia coli SE11]
 gi|226732579|sp|B6HZ32|RSMA_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|209910502|dbj|BAG75576.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli SE11]
          Length = 273

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 141/280 (50%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|291562910|emb|CBL41726.1| dimethyladenosine transferase [butyrate-producing bacterium SS3/4]
          Length = 288

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 153/292 (52%), Gaps = 19/292 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
            + N  +++  I+  Y+ + +K  GQNFL+D ++L+KI  ++G      V+EIG G G +
Sbjct: 3   NLGNPKNTI-EIIQKYEFMFQKKFGQNFLIDTHVLEKIISAAGITKNDCVLEIGPGIGTM 61

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118
           TQ L    A  V+ +E D+   PILK+  + + N + +I +D L+VD +     +N   P
Sbjct: 62  TQYLAE-NAGHVVAVEIDRNLIPILKETLADYDN-VTVINEDILRVDIKALAEEYNGGKP 119

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +       +++T++ QKEV +R+     S  YG LS+  
Sbjct: 120 IKVVANLPYYITTPIIMGLFESGVP---IDNITVMVQKEVADRMKEGPGSKDYGALSLAV 176

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236
            +  +  ++ ++ P+ F P P V S VI    H   P+     +L  KI + +F +RRKT
Sbjct: 177 QYYAEPEIVANVPPNCFIPRPNVGSAVIRLTRHKEMPVEVKDPALMFKIIRASFNQRRKT 236

Query: 237 LRQSLKRL----GGENLLHQA----GIETNLRAENLSIEDFCRITNILTDNQ 280
           L+  L         +  +  A    G+   +R E LS+  F ++++IL + +
Sbjct: 237 LQNGLGNAPELPYTKEQIAAAIAEMGLTPTIRGEALSLAQFAQLSDILGEMK 288


>gi|261823067|ref|YP_003261173.1| dimethyladenosine transferase [Pectobacterium wasabiae WPP163]
 gi|261607080|gb|ACX89566.1| dimethyladenosine transferase [Pectobacterium wasabiae WPP163]
          Length = 272

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 99/280 (35%), Positives = 142/280 (50%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
             +     R   VIE D+     L+       ++L IIQ DA+ +DF         P+R+
Sbjct: 53  APIGDRMDR-FTVIELDRDLAARLEKH-PTLKDKLTIIQQDAMTIDFAALAEQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+     T+      +  + QKEV  R+ A  NS  +GRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF +RRKTLR 
Sbjct: 168 CQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAVIPYPVSDIRVLSRITTEAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L     L + GI    RAEN+++E +CR+ N L+++
Sbjct: 228 SLGNLFTPETLTELGINVTSRAENVTVEQYCRLANWLSEH 267


>gi|218703312|ref|YP_002410831.1| dimethyladenosine transferase [Escherichia coli UMN026]
 gi|298378654|ref|ZP_06988538.1| dimethyladenosine transferase [Escherichia coli FVEC1302]
 gi|226732578|sp|B7N7S6|RSMA_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218430409|emb|CAR11276.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli UMN026]
 gi|298280988|gb|EFI22489.1| dimethyladenosine transferase [Escherichia coli FVEC1302]
          Length = 273

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 141/280 (50%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|331661093|ref|ZP_08362025.1| dimethyladenosine transferase [Escherichia coli TA206]
 gi|315298429|gb|EFU57684.1| dimethyladenosine transferase [Escherichia coli MS 16-3]
 gi|331052135|gb|EGI24174.1| dimethyladenosine transferase [Escherichia coli TA206]
          Length = 273

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|90411944|ref|ZP_01219952.1| dimethyladenosine transferase [Photobacterium profundum 3TCK]
 gi|90327202|gb|EAS43574.1| dimethyladenosine transferase [Photobacterium profundum 3TCK]
          Length = 271

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 90/270 (33%), Positives = 138/270 (51%), Gaps = 7/270 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  S   L G  ++EIG G G +T+ +  L   K  V
Sbjct: 7   HLGHRARKRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEPVGRL-VDKFSV 65

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L+       ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 66  IELDRDLAKRLRHH-PDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +  +        E +  + QKEV  R+ A      YGRL+V+  + ++ T + ++ P  F
Sbjct: 125 HLFTFHEH---VEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESF 181

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S V+   P+   P PC  L+ L ++ +E F +RRKT+R   K L     L   
Sbjct: 182 TPAPKVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTVEQLEHL 241

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283
           G+   LR EN++++ F ++ N L  N   A
Sbjct: 242 GVNPGLRPENITLQQFVKMANWLDANHQNA 271


>gi|307710852|ref|ZP_07647279.1| dimethyladenosine transferase [Streptococcus mitis SK321]
 gi|307617297|gb|EFN96470.1| dimethyladenosine transferase [Streptococcus mitis SK321]
          Length = 290

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+E+F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLIKALDQAGLSPSVRGEALSLEEFASLADALK 286


>gi|26245977|ref|NP_752016.1| dimethyladenosine transferase [Escherichia coli CFT073]
 gi|91209113|ref|YP_539099.1| dimethyladenosine transferase [Escherichia coli UTI89]
 gi|110640266|ref|YP_667994.1| dimethyladenosine transferase [Escherichia coli 536]
 gi|117622341|ref|YP_851254.1| dimethyladenosine transferase [Escherichia coli APEC O1]
 gi|191174105|ref|ZP_03035619.1| dimethyladenosine transferase [Escherichia coli F11]
 gi|215485215|ref|YP_002327646.1| dimethyladenosine transferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218556992|ref|YP_002389905.1| dimethyladenosine transferase [Escherichia coli S88]
 gi|227885048|ref|ZP_04002853.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Escherichia coli 83972]
 gi|237704197|ref|ZP_04534678.1| dimethyladenosine transferase [Escherichia sp. 3_2_53FAA]
 gi|300981027|ref|ZP_07175304.1| dimethyladenosine transferase [Escherichia coli MS 45-1]
 gi|300984194|ref|ZP_07176922.1| dimethyladenosine transferase [Escherichia coli MS 200-1]
 gi|301048437|ref|ZP_07195464.1| dimethyladenosine transferase [Escherichia coli MS 185-1]
 gi|306815349|ref|ZP_07449498.1| dimethyladenosine transferase [Escherichia coli NC101]
 gi|312966174|ref|ZP_07780400.1| dimethyladenosine transferase [Escherichia coli 2362-75]
 gi|331645161|ref|ZP_08346272.1| dimethyladenosine transferase [Escherichia coli M605]
 gi|33516938|sp|Q8FL96|RSMA_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600864|sp|Q0TLT6|RSMA_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365024|sp|Q1RGE6|RSMA_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221662|sp|A1A7A0|RSMA_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732573|sp|B7MAH6|RSMA_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807866|sp|B7UI99|RSMA_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|26106374|gb|AAN78560.1|AE016755_60 Dimethyladenosine transferase [Escherichia coli CFT073]
 gi|91070687|gb|ABE05568.1| dimethyladenosine transferase [Escherichia coli UTI89]
 gi|110341858|gb|ABG68095.1| dimethyladenosine transferase [Escherichia coli 536]
 gi|115511465|gb|ABI99539.1| dimethyladenosine transferase [Escherichia coli APEC O1]
 gi|190905599|gb|EDV65224.1| dimethyladenosine transferase [Escherichia coli F11]
 gi|215263287|emb|CAS07602.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218363761|emb|CAR01422.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli S88]
 gi|226902109|gb|EEH88368.1| dimethyladenosine transferase [Escherichia sp. 3_2_53FAA]
 gi|227837877|gb|EEJ48343.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Escherichia coli 83972]
 gi|281177268|dbj|BAI53598.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli SE15]
 gi|294493966|gb|ADE92722.1| dimethyladenosine transferase [Escherichia coli IHE3034]
 gi|300299730|gb|EFJ56115.1| dimethyladenosine transferase [Escherichia coli MS 185-1]
 gi|300306724|gb|EFJ61244.1| dimethyladenosine transferase [Escherichia coli MS 200-1]
 gi|300409063|gb|EFJ92601.1| dimethyladenosine transferase [Escherichia coli MS 45-1]
 gi|305851011|gb|EFM51466.1| dimethyladenosine transferase [Escherichia coli NC101]
 gi|307551898|gb|ADN44673.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli ABU 83972]
 gi|307629627|gb|ADN73931.1| dimethyladenosine transferase [Escherichia coli UM146]
 gi|312289417|gb|EFR17311.1| dimethyladenosine transferase [Escherichia coli 2362-75]
 gi|315285119|gb|EFU44564.1| dimethyladenosine transferase [Escherichia coli MS 110-3]
 gi|315293372|gb|EFU52724.1| dimethyladenosine transferase [Escherichia coli MS 153-1]
 gi|320197502|gb|EFW72116.1| Dimethyladenosine transferase [Escherichia coli WV_060327]
 gi|323955249|gb|EGB51022.1| dimethyladenosine transferase [Escherichia coli H263]
 gi|324008399|gb|EGB77618.1| dimethyladenosine transferase [Escherichia coli MS 57-2]
 gi|324012309|gb|EGB81528.1| dimethyladenosine transferase [Escherichia coli MS 60-1]
 gi|330909903|gb|EGH38413.1| dimethyladenosine transferase [Escherichia coli AA86]
 gi|331045918|gb|EGI18037.1| dimethyladenosine transferase [Escherichia coli M605]
          Length = 273

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|319654955|ref|ZP_08009029.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2]
 gi|317393380|gb|EFV74144.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2]
          Length = 292

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 20/288 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + IL  Y    KK +GQNFL+D NIL++I + +   +    IEIG G G LT+ L 
Sbjct: 8   PARTRAILDKYGFSFKKSLGQNFLIDTNILRRIVDHADLSEESGAIEIGPGIGALTEQLA 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              ++KV+  E DQ+  PIL++  S +P+ + II +D LK D     E+ F   + I ++
Sbjct: 68  RR-SKKVLAFEIDQRLLPILEETLSPYPH-VSIINEDVLKADVKTAIEQEFEGINDIMVV 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   +           +  + QKEV +RI+A+  +  YG LS+   + T
Sbjct: 126 ANLPYYVTTPIIMKLLEDKLP---IRGIVCMLQKEVADRISARPGTKEYGSLSIAVQYYT 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           +A     +   VF P P V S VI       P           K+T+ +F +RRKTL  +
Sbjct: 183 EAETAMIVPKTVFVPQPNVDSAVIKLTKRKEPAVAVKSESFFFKVTKASFAQRRKTLLNN 242

Query: 241 L---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L         K+    + L QA +E   R E LSIE+F R+++ L  +
Sbjct: 243 LTSQLPGGKQKKEHILSALEQANVEPGRRGETLSIEEFARLSDALLPH 290


>gi|163750059|ref|ZP_02157302.1| dimethyladenosine transferase [Shewanella benthica KT99]
 gi|161330116|gb|EDQ01098.1| dimethyladenosine transferase [Shewanella benthica KT99]
          Length = 272

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 144/280 (51%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+N+ H             +K  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNRVH--------LGHTARKRFGQNFLTDHNVINRIVGAIAPDNDHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +      K+ V+E D+     L+       ++LEI Q DAL  DF +       ++I 
Sbjct: 53  EPVAES-IDKLTVVELDRDLVARLQKH-PTLKHKLEIHQGDALNFDFSQLIEEGKELKIF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+           +++  + QKEV  R++A   +  YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFQFAEH---IKNMHFMLQKEVVLRLSATPGTKAYGRLTVMAQYHC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ P  F P+PKV S V+  +P+   P PC  ++ L+ +T  AF  RRKTLR +
Sbjct: 168 QVMPVLEVPPESFTPAPKVDSAVVRLVPYKQKPWPCKDVDFLRHMTTTAFSMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK +  +       I+++LR E +S+E +  + N+L D +
Sbjct: 228 LKHIISDEEFLSLNIDSSLRPEQISVEQYVAMANMLLDKK 267


>gi|82775456|ref|YP_401803.1| dimethyladenosine transferase [Shigella dysenteriae Sd197]
 gi|119365843|sp|Q32K43|RSMA_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|81239604|gb|ABB60314.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase [Shigella
           dysenteriae Sd197]
          Length = 273

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+ +
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLHV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKVYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|312970146|ref|ZP_07784328.1| dimethyladenosine transferase [Escherichia coli 1827-70]
 gi|310337644|gb|EFQ02755.1| dimethyladenosine transferase [Escherichia coli 1827-70]
          Length = 273

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +        ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKDQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|15799736|ref|NP_285748.1| dimethyladenosine transferase [Escherichia coli O157:H7 EDL933]
 gi|15829310|ref|NP_308083.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. Sakai]
 gi|168751689|ref|ZP_02776711.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756882|ref|ZP_02781889.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762818|ref|ZP_02787825.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766746|ref|ZP_02791753.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776974|ref|ZP_02801981.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781755|ref|ZP_02806762.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785109|ref|ZP_02810116.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC869]
 gi|168801939|ref|ZP_02826946.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC508]
 gi|195937727|ref|ZP_03083109.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807925|ref|ZP_03250262.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813755|ref|ZP_03255084.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819017|ref|ZP_03259337.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397383|ref|YP_002268661.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|217326445|ref|ZP_03442529.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791190|ref|YP_003076027.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226811|ref|ZP_05941092.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255214|ref|ZP_05947747.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291280877|ref|YP_003497695.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N,
           N-adenosyl(rRNA) dimethyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|27151579|sp|Q8XA14|RSMA_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732574|sp|B5YZ89|RSMA_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|12512746|gb|AAG54356.1|AE005182_5 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O157:H7 str. EDL933]
 gi|13359512|dbj|BAB33479.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. Sakai]
 gi|187767719|gb|EDU31563.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014303|gb|EDU52425.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000721|gb|EDU69707.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356082|gb|EDU74501.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364097|gb|EDU82516.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366989|gb|EDU85405.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374734|gb|EDU93150.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC869]
 gi|189375991|gb|EDU94407.1| dimethyladenosine transferase [Escherichia coli O157:H7 str. EC508]
 gi|208727726|gb|EDZ77327.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735032|gb|EDZ83719.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739140|gb|EDZ86822.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158783|gb|ACI36216.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746894|gb|ACI71754.1| dimethyladenosine transferase [Escherichia coli]
 gi|209746896|gb|ACI71755.1| dimethyladenosine transferase [Escherichia coli]
 gi|209746898|gb|ACI71756.1| dimethyladenosine transferase [Escherichia coli]
 gi|209746900|gb|ACI71757.1| dimethyladenosine transferase [Escherichia coli]
 gi|209746902|gb|ACI71758.1| dimethyladenosine transferase [Escherichia coli]
 gi|217322666|gb|EEC31090.1| dimethyladenosine transferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590590|gb|ACT69951.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290760750|gb|ADD54711.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N,
           N-adenosyl(rRNA) dimethyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190426|gb|EFW65076.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320642093|gb|EFX11444.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O157:H7 str. G5101]
 gi|320647456|gb|EFX16251.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O157:H- str. 493-89]
 gi|320652790|gb|EFX21028.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O157:H- str. H 2687]
 gi|320658179|gb|EFX25908.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663488|gb|EFX30772.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668800|gb|EFX35595.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345229|gb|EGD68972.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str. 1125]
 gi|326346918|gb|EGD70652.1| Dimethyladenosine transferase [Escherichia coli O157:H7 str. 1044]
          Length = 273

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 141/280 (50%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAEN 267


>gi|315500017|ref|YP_004088820.1| dimethyladenosine transferase [Asticcacaulis excentricus CB 48]
 gi|315418029|gb|ADU14669.1| dimethyladenosine transferase [Asticcacaulis excentricus CB 48]
          Length = 277

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 112/284 (39%), Positives = 158/284 (55%), Gaps = 15/284 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS----GSLDGITVIEIGA 56
           MT+     SL+  L  + ++ KK  GQ+FLLDLN+ +KI         S DG  VIE+G 
Sbjct: 1   MTL----PSLRESLEAHGLMAKKSFGQHFLLDLNVTRKIVRLGQEGGNSFDGQVVIEVGP 56

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--- 113
           GPG LT+  L   A  V+ +EKD +F  +L ++ + +P R  +++ DALKV+        
Sbjct: 57  GPGGLTRAALESEATYVLAVEKDARFIDLLTELDTAYPGRFGVVEADALKVNEPALLAER 116

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
            +     +++NLPYN+GT LL  W++    P   +SLTL+FQ EV  R+ A      YGR
Sbjct: 117 GLPPQAHLVSNLPYNVGTPLLIKWLTGPWQP---KSLTLMFQLEVALRVVAPVGDDDYGR 173

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGK 232
           L V++        + D+    F P PKV S V+  IP    P    + +L+ +T  AFG+
Sbjct: 174 LGVISQVLCVCEKLMDLPARAFTPPPKVDSAVVRLIPRAERPDARVIHNLETLTAAAFGQ 233

Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RRK LR SLK LGGE LL + GI+  LRAEN+S  DF R+   L
Sbjct: 234 RRKMLRASLKALGGETLLAKVGIDPTLRAENISPADFLRLAEAL 277


>gi|304410422|ref|ZP_07392040.1| dimethyladenosine transferase [Shewanella baltica OS183]
 gi|307304514|ref|ZP_07584264.1| dimethyladenosine transferase [Shewanella baltica BA175]
 gi|304350906|gb|EFM15306.1| dimethyladenosine transferase [Shewanella baltica OS183]
 gi|306911916|gb|EFN42340.1| dimethyladenosine transferase [Shewanella baltica BA175]
          Length = 268

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 142/280 (50%), Gaps = 15/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D N++ +I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDGNVIDRIVGAISPDNHHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +       + V+E D+     L        ++L I Q DAL+ DF +       +++ 
Sbjct: 53  EPVAE-AVDNLTVVELDRDLVERLHHH-PVLKDKLTIHQGDALQFDFGQLSVPGKKMKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+      +    E++  + QKEV  R++A      YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYFC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ PH F P+PKV S V+  +P+   P  C  +  L+ +   AF  RRKTLR +
Sbjct: 168 QVVPVLEVPPHSFTPAPKVDSAVVRLLPYAVKPFSCKDVTVLRHLCTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK +  ++   Q GI+++ R E +S++ +  + N++ D +
Sbjct: 228 LKHMLSDDEFEQLGIDSSQRPEQISVQQYVAMANMVCDKK 267


>gi|194446536|ref|YP_002039320.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|226732621|sp|B4T6L6|RSMA_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|194405199|gb|ACF65421.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 273

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L     L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 228 SLDNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270


>gi|330898897|gb|EGH30316.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 268

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L++I +EAF +RRKTLR +LK L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R  + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAVFVRRADTLSEK 264


>gi|154505613|ref|ZP_02042351.1| hypothetical protein RUMGNA_03152 [Ruminococcus gnavus ATCC 29149]
 gi|153794052|gb|EDN76472.1| hypothetical protein RUMGNA_03152 [Ruminococcus gnavus ATCC 29149]
          Length = 307

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 148/291 (50%), Gaps = 19/291 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y  + +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 21  TLGNPQNTI-AVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDFVLEIGPGIGTM 79

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    A KV  +E D+   PIL+D    + N +++I +D LKVD  +     N   P
Sbjct: 80  TQYLAC-AAGKVAAVEIDKALIPILEDTLDGYDN-VQVINEDVLKVDIAELAKQENEGKP 137

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++             +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 138 IKVVANLPYYITTPIIMGLFENHVP---MKSITVMVQKEVADRMQVGPGTKDYGALSLAV 194

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236
            +  K  ++ ++ P+ F P PKV S VI    +  P       + + +I + +F +RRKT
Sbjct: 195 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLDRYEEPPVQVKDEKLMFRIIRASFNQRRKT 254

Query: 237 LRQSLKRL----GGENLLHQA----GIETNLRAENLSIEDFCRITNILTDN 279
           L   LK        +  +  A    G   ++R E L++E+F  + N L+D 
Sbjct: 255 LANGLKNSPELDFTKEQIEAAIGHLGRGASIRGEALTLEEFAELANYLSDQ 305


>gi|324992524|gb|EGC24445.1| dimethyladenosine transferase [Streptococcus sanguinis SK405]
 gi|324995947|gb|EGC27858.1| dimethyladenosine transferase [Streptococcus sanguinis SK678]
 gi|327460748|gb|EGF07083.1| dimethyladenosine transferase [Streptococcus sanguinis SK1]
 gi|327472469|gb|EGF17900.1| dimethyladenosine transferase [Streptococcus sanguinis SK408]
 gi|328944611|gb|EGG38772.1| dimethyladenosine transferase [Streptococcus sanguinis SK1087]
          Length = 290

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAES-AVEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPAAEVQDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADALKS 287


>gi|269103551|ref|ZP_06156248.1| dimethyladenosine transferase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163449|gb|EEZ41945.1| dimethyladenosine transferase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 270

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 131/266 (49%), Gaps = 7/266 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+ +  L      V
Sbjct: 6   HLGHRARKRFGQNFLTDPFIIDGIVSAINPRSGQNLVEIGPGLGAITEEVGKL-VDHFNV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++       +L I + DA++ DF K     + +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PDLGPKLTINEGDAMRFDFTKLIREDAKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +  +        + +  + QKEV  R+ A      YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFTYHK---DVQDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYCKVMPVLEVPPESF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S V+   P+   P PC  L+ L ++ +E F +RRKT+R   K L     +   
Sbjct: 181 VPAPKVDSAVVRLTPYETLPFPCTNLKWLDRVCREGFNQRRKTVRNCFKALMTAEQIEAL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G+  + R EN+S+E F  + N L  N
Sbjct: 241 GVNPSDRPENISVEKFVALANWLDAN 266


>gi|332365155|gb|EGJ42918.1| dimethyladenosine transferase [Streptococcus sanguinis SK1059]
          Length = 290

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P++++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPVKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKSYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   KI++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVEVQDEKFFFKISKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADALKS 287


>gi|325495979|gb|EGC93838.1| 16S rRNA dimethyladenosine transferase, SAM-dependent [Escherichia
           fergusonii ECD227]
          Length = 273

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSIEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|324112546|gb|EGC06523.1| dimethyladenosine transferase [Escherichia fergusonii B253]
          Length = 273

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELATKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSIEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|306824464|ref|ZP_07457810.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433251|gb|EFM36221.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 290

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 151/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQYIQNFKNPE 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   KI++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDEQFFFKISKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+E+F  +++ L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLSDALK 286


>gi|300923999|ref|ZP_07140000.1| dimethyladenosine transferase [Escherichia coli MS 182-1]
 gi|301330178|ref|ZP_07222840.1| dimethyladenosine transferase [Escherichia coli MS 78-1]
 gi|300419768|gb|EFK03079.1| dimethyladenosine transferase [Escherichia coli MS 182-1]
 gi|300843818|gb|EFK71578.1| dimethyladenosine transferase [Escherichia coli MS 78-1]
          Length = 273

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +    GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVFTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|315611880|ref|ZP_07886799.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296]
 gi|315316058|gb|EFU64091.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296]
          Length = 290

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPE 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P           K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+E+F  +++ L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKEKLTKALDQAGLSPSVRGEALSLEEFASLSDALK 286


>gi|218531855|ref|YP_002422671.1| dimethyladenosine transferase [Methylobacterium chloromethanicum
           CM4]
 gi|218524158|gb|ACK84743.1| dimethyladenosine transferase [Methylobacterium chloromethanicum
           CM4]
          Length = 296

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 129/290 (44%), Positives = 190/290 (65%), Gaps = 10/290 (3%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
            +    L+ ++  + + PKK +GQNFL DLN+  +IA S+G+L+G+TV+E+G GPG LT+
Sbjct: 8   TDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGPGPGGLTR 67

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
            LL  GA++V+ IE+D +  P L +I++ +P RL++I  DA+  D         P+RI+A
Sbjct: 68  ALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGEG-PVRIVA 126

Query: 124 NLPYNIGTRLLFNWISADT----WPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLT 178
           NLPYN+ T LL  W+ ADT    WPP+WES TL+FQ+EV ERI A ++   +YGRL VL 
Sbjct: 127 NLPYNVATVLLTGWLGADTRDEAWPPWWESATLMFQREVAERIVADESDRANYGRLGVLC 186

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
           GWRT+AT++FD++P  F P PKVTS+V+H  P   P PC +  L+++T+ AFG+RRK LR
Sbjct: 187 GWRTQATILFDVAPSAFVPPPKVTSSVVHLRPRPEPPPCRIADLERVTRAAFGQRRKMLR 246

Query: 239 QSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILT--DNQDIAI 284
           QSLK    +   LL  AG+    RAE + +  F  +   L   ++++ A+
Sbjct: 247 QSLKAATPDPIRLLTAAGLPETARAEEIPVAGFVAMARALEAGESRESAL 296


>gi|331650945|ref|ZP_08351973.1| dimethyladenosine transferase [Escherichia coli M718]
 gi|331051399|gb|EGI23448.1| dimethyladenosine transferase [Escherichia coli M718]
          Length = 273

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT +AF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTKAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|160939614|ref|ZP_02086962.1| hypothetical protein CLOBOL_04506 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437405|gb|EDP15169.1| hypothetical protein CLOBOL_04506 [Clostridium bolteae ATCC
           BAA-613]
          Length = 292

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 146/289 (50%), Gaps = 19/289 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  I+  Y+   +K  GQNFL+D ++L KI  ++G      V+EIG G G +
Sbjct: 3   TLGNPKNTI-EIIQKYQFAFQKKFGQNFLIDTHVLDKIISAAGITGDDCVLEIGPGIGTM 61

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118
           TQ L    A KV+ +E D    PIL +    + N + +I  D LK+D  +    +N   P
Sbjct: 62  TQYLAEH-AGKVVAVEIDTNLLPILDETLKGYSN-VTVINSDILKLDMNQLVDEYNDGRP 119

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     ++      +++T++ QKEV +R+     S  YG LS+  
Sbjct: 120 IKVVANLPYYITTPIIMGLFESNVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAV 176

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKT 236
            +  K  ++ ++ P+ F P P V S VI    +  P     E   + ++ + +F +RRKT
Sbjct: 177 QYYAKPYIVANVPPNCFIPRPNVGSAVIRLTRYKEPPVQVDEPGVMFRLIRASFNQRRKT 236

Query: 237 LRQSLKRL----GGEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277
           L+  L         +      +   G+  ++R E L++E F  ++N  T
Sbjct: 237 LQNGLNNSPEVPYTKEQIAVAIESLGVPASVRGEALTLEQFAGLSNYFT 285


>gi|156935428|ref|YP_001439344.1| dimethyladenosine transferase [Cronobacter sakazakii ATCC BAA-894]
 gi|166221663|sp|A7MIA7|RSMA_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|156533682|gb|ABU78508.1| hypothetical protein ESA_03287 [Cronobacter sakazakii ATCC BAA-894]
          Length = 273

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 142/280 (50%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+ +DF +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMDFGELSQKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYF 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +PH  P      L  L ++T EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPTAFTPPPKVDSAVVRLVPHATPPHPVKELRLLSRLTTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  +    +L   GI+  +RAEN+S+  +C++ N L DN
Sbjct: 228 SLGNVFSPEVLTSLGIDPAMRAENISVAQYCQMANYLADN 267


>gi|168187487|ref|ZP_02622122.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund]
 gi|169294621|gb|EDS76754.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund]
          Length = 281

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 143/278 (51%), Gaps = 13/278 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           + K ++  Y     K +GQNFL D N+L  I   S   +   VIEIG G G LT+ LL  
Sbjct: 5   TTKDVVQKYNFKFTKSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLK- 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A++V  IE D    PIL +     PN  ++I  DALKVDF +       ++++ANLPY 
Sbjct: 64  KAKRVCAIELDSDLIPILTEELKDFPN-FKLIHKDALKVDFNEIIGDEKSVKVVANLPYY 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + T ++   +        ++SLT++ QKEV ERI ++ N   YG LS+L  +     ++ 
Sbjct: 123 VTTPIIARLLKE---GYKFKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTEILR 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            + P  F P PKV S +I       P       E   KI +++F  RRKTLR ++K LG 
Sbjct: 180 KVPPTCFIPQPKVDSIIIKLDRLDEPRVKVKDKELFFKIVRQSFNMRRKTLRNAIKSLGD 239

Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 E + + AGI+   R E LS+++F  + + + +
Sbjct: 240 VSGENIEKVFNDAGIDPRRRGETLSLQEFGDLADSVYN 277


>gi|167766021|ref|ZP_02438074.1| hypothetical protein CLOSS21_00513 [Clostridium sp. SS2/1]
 gi|167712101|gb|EDS22680.1| hypothetical protein CLOSS21_00513 [Clostridium sp. SS2/1]
          Length = 285

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 152/289 (52%), Gaps = 19/289 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N  +++  ++  Y    +K  GQNFL+D  +L+KI  ++       V+EIG G G 
Sbjct: 1   MKLGNPKNTI-EVIQKYDFDFQKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           +TQ L    AR+V+ +E D+   PIL D  S + N + I+  D LKVD  K     N   
Sbjct: 60  MTQYLAE-NAREVMAVEIDKNLIPILSDTLSAYDN-VSILNADILKVDIAKIVEEKNGGK 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P++++ANLPY I T ++     +       +S+T++ QKEV +R+ +   +  YG LS+ 
Sbjct: 118 PVKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQSGPGTKDYGALSLA 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             +  +  ++ ++ P+ F P PKV S VI    + +        + L ++ + +F +RRK
Sbjct: 175 VQYYAEPYVVANVPPNCFMPRPKVGSAVIRLTKYKDAPIKVTNEKLLFQLIRASFNQRRK 234

Query: 236 TLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL+  +K  GG N         L +  +  ++R E L++E F +++NIL
Sbjct: 235 TLQNGIKNFGGLNFSKEQVAQALEEMELPASVRGEALTLEQFAQLSNIL 283


>gi|56461332|ref|YP_156613.1| dimethyladenosine transferase [Idiomarina loihiensis L2TR]
 gi|62900479|sp|Q5QVN7|RSMA_IDILO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56180342|gb|AAV83064.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Idiomarina loihiensis L2TR]
          Length = 288

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 93/266 (34%), Positives = 143/266 (53%), Gaps = 8/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+++I ++   L G  +IEIG G   LT+  +      + V
Sbjct: 17  HLGHRARKRFGQNFLNDDYIIEQIVDAINPLPGENLIEIGPGLAALTEPTVDRSGH-LKV 75

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L+       ++LE+IQ DAL +DF +F     P R+  NLPYNI T L+F
Sbjct: 76  IEIDRDLVERLQHH-PFLSSKLEVIQADALSIDFSQFAEEG-PARVFGNLPYNISTPLIF 133

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +    +    + +  + QKEV +R+ A+  S  YGR+SV      K T +  + P  F
Sbjct: 134 HLLK---FADDVKDMHFMLQKEVVDRLAAEPGSKSYGRISVGVQQACKVTPVVAVPPSAF 190

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S+V+   P+   P P   ++ L  +   AF +RRKT+R +LK+L     +   
Sbjct: 191 TPPPKVESSVVRLEPYAESPHPVKDKAQLHSLCLTAFNQRRKTIRNNLKQLVPAEQMEAL 250

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           GI+   R E LS++D+CRI++ LT++
Sbjct: 251 GIDPGARPETLSVDDYCRISDWLTEH 276


>gi|307709722|ref|ZP_07646173.1| dimethyladenosine transferase [Streptococcus mitis SK564]
 gi|307619424|gb|EFN98549.1| dimethyladenosine transferase [Streptococcus mitis SK564]
          Length = 290

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVVVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADALK 286


>gi|237749068|ref|ZP_04579548.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter
           formigenes OXCC13]
 gi|229380430|gb|EEO30521.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter
           formigenes OXCC13]
          Length = 256

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 93/260 (35%), Positives = 138/260 (53%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D ++L  I  +        ++EIG G G +T+ LL   + ++ VIE
Sbjct: 2   KHIPRKRFGQNFLKDQSVLDDIVSAIAPKPTDHMLEIGPGMGAMTENLLPYLS-QMDVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFN 136
            D+     LK       ++L I Q DAL  DF      S    RI+ NLPYNI + LLF+
Sbjct: 61  LDRDLVVYLKKRFPA--DKLTIHQGDALSFDFRTIGASSENKWRIVGNLPYNISSPLLFH 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++  +     E    + Q+EV ER+ A+  +  YGRLSV+  W+    ++F + P  F 
Sbjct: 119 LMNFSSC---IEDQHFMLQREVVERMVAEPGNKAYGRLSVMLQWQYDMELLFIVPPTAFD 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S ++  IP   P  C   +L+K   +AF +RRK LR +L  L  E+ L + GI+
Sbjct: 176 PMPRVDSAIVRMIPRETPEACSSVALEKTVTQAFSQRRKMLRNNLAPLFSESRLIELGID 235

Query: 257 TNLRAENLSIEDFCRITNIL 276
              R E+L++E F  + N L
Sbjct: 236 PTRRPEDLTVEQFILLANHL 255


>gi|325695462|gb|EGD37362.1| dimethyladenosine transferase [Streptococcus sanguinis SK150]
          Length = 290

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAES-ATEVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESRIP---FSEFVVMMQREVADRISAQPNTKSYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRNQPPVEVQNEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSHFGKSEETKSKLTAALERADLSPSVRGEALSLEEFARLADALKS 287


>gi|300919604|ref|ZP_07136096.1| dimethyladenosine transferase [Escherichia coli MS 115-1]
 gi|300413350|gb|EFJ96660.1| dimethyladenosine transferase [Escherichia coli MS 115-1]
          Length = 273

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQRGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|297516941|ref|ZP_06935327.1| dimethyladenosine transferase [Escherichia coli OP50]
          Length = 273

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  IA +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIASAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|33152288|ref|NP_873641.1| dimethyladenosine transferase [Haemophilus ducreyi 35000HP]
 gi|62900573|sp|Q7VM33|RSMA_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33148511|gb|AAP96030.1| dimethyladenosine transferase [Haemophilus ducreyi 35000HP]
          Length = 289

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 93/272 (34%), Positives = 141/272 (51%), Gaps = 12/272 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D+N++  I  +    +   ++EIG G G LT+ +      K+ 
Sbjct: 8   KHLGHTARKRFGQNFLSDMNVIHNIVAAINPRNEDFLLEIGPGLGALTEPVAEQ-VEKLT 66

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNI 129
           VIE D+     L+     H ++L +I+ DAL+ +F  +F+         IRI  NLPYNI
Sbjct: 67  VIELDRDLAERLRHHPFLH-HKLTVIEQDALRFNFRDYFDSLNLNHHQAIRIFGNLPYNI 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + +
Sbjct: 126 STPLMFHLFKFHD---LIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQVIPVLE 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P+PKV S V+  +P+   P P   +  L ++T  AF +RRKTLR +L  L   
Sbjct: 183 VPPTAFKPAPKVDSAVVRLMPYKTLPYPVKDVYWLNRVTTHAFNQRRKTLRNALSTLFTA 242

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             L   GI    RAENL+I D+ R+ N L DN
Sbjct: 243 QQLEMLGINLTDRAENLTISDYARLANWLCDN 274


>gi|168464366|ref|ZP_02698269.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195632741|gb|EDX51195.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 273

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRALAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L     L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 228 SLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 270


>gi|323190266|gb|EFZ75542.1| dimethyladenosine transferase [Escherichia coli RN587/1]
          Length = 273

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHTTMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L ++  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAESAPL 270


>gi|317499422|ref|ZP_07957689.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893294|gb|EFV15509.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 285

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 153/289 (52%), Gaps = 19/289 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N  +++  ++  Y    +K  GQNFL+D  +L+KI  ++       V+EIG G G 
Sbjct: 1   MKLGNPKNTI-EVIQKYDFDFQKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           +TQ L    AR+V+ +E D+   PIL D  S + N + I+  D LKVD  K     N   
Sbjct: 60  MTQYLAE-NAREVMAVEIDKNLIPILSDTLSAYDN-VSILNADILKVDIAKIVEEKNGGK 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P++++ANLPY I T ++     +       +S+T++ QKEV +R+ +   +  YG LS+ 
Sbjct: 118 PVKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQSGPGTKDYGALSLA 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             +  +  ++ ++ P+ F P PKV S VI    + + +      + L ++ + +F +RRK
Sbjct: 175 VQYYAEPYVVANVPPNCFMPRPKVGSAVIRLTKYKDALIKVTNEKLLFQLIRASFNQRRK 234

Query: 236 TLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL+  +K  GG N         L +  +  ++R E L++E F +++NIL
Sbjct: 235 TLQNGIKNFGGLNFSKEQVAQALEEMELPASVRGEALTLEQFAQLSNIL 283


>gi|307132632|ref|YP_003884648.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Dickeya dadantii 3937]
 gi|306530161|gb|ADN00092.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Dickeya dadantii 3937]
          Length = 272

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 138/280 (49%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
             +         V+E D+     L ++     ++L IIQ DA+ VDF         P+R+
Sbjct: 53  IPVGER-IDSFTVVELDRDLAARL-EVHPTLRDKLTIIQQDAMTVDFAALSQQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S          +  + QKEV  R+ A  +S  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IRDMHFMLQKEVVNRLVAGPDSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH   P P      L +IT EAF +RRKTLR 
Sbjct: 168 CQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTTSPYPAVDTRILSRITTEAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L     L    ++ N+RAEN++I  +CR+   LT +
Sbjct: 228 SLGNLFTPEQLTALEVDPNVRAENVTITQYCRLAEWLTAH 267


>gi|222031885|emb|CAP74623.1| Dimethyladenosine transferase [Escherichia coli LF82]
 gi|312944659|gb|ADR25486.1| dimethyladenosine transferase [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 273

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAAKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   GI+  +RAEN+S+  +C++ N L ++  +
Sbjct: 228 SLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAESAPL 270


>gi|153854785|ref|ZP_01996019.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814]
 gi|149752692|gb|EDM62623.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814]
          Length = 292

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 93/289 (32%), Positives = 152/289 (52%), Gaps = 19/289 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y    +K  GQNFL+D ++L KI +S+   +   V+EIG G G +
Sbjct: 5   TLGNPQNTI-EVLQKYNFSFQKKFGQNFLIDTHVLDKIIQSANITEDDMVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSP 118
           TQ L    A KVI +E D+   PIL+D  S + N + +I +D LK+D +K  +      P
Sbjct: 64  TQYLA-QAAGKVIAVEIDKNLIPILEDTLSGYDN-VRVINEDVLKLDLKKLADEENNGKP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPY I T ++      +      ES+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 VKVVANLPYYITTPIIMGLFENEVP---VESITVMVQKEVADRMQTGPGNKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236
            +     ++ ++ P+ F P PKV S VI    H   P+    E L   I + +F +RRKT
Sbjct: 179 QYYADPYIVANVPPNCFMPRPKVGSAVIRLTCHQEKPVQVQDEKLMFNIIRASFNQRRKT 238

Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L   LK            E  +   G   ++R E L++E+F R++++L+
Sbjct: 239 LANGLKNAATLDFTKEEVEAAIDALGKGASVRGETLTLEEFARLSDLLS 287


>gi|332288954|ref|YP_004419806.1| dimethyladenosine transferase [Gallibacterium anatis UMN179]
 gi|330431850|gb|AEC16909.1| dimethyladenosine transferase [Gallibacterium anatis UMN179]
          Length = 282

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 138/271 (50%), Gaps = 8/271 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I++ I  +        +IEIG G G LT+ +       + V
Sbjct: 6   HLGHTARKRFGQNFLHDDQIIQSIVAAINPQANDFLIEIGPGLGALTEPVAEQ-IEHLTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134
           IE D+     L+     H  +L +I+ D ++ DF++       P+RI  NLPYNI T L+
Sbjct: 65  IELDRDLAERLRHHPFLHQ-KLTVIEQDVMRFDFQQLAQQAEKPLRIFGNLPYNISTPLM 123

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+           + +  + QKEV  R+ A  NS  YGRL+++  +  +   + ++ P  
Sbjct: 124 FHLFQYHD---VIQDMHFMLQKEVVNRLCAGPNSKAYGRLTIMAQYFCQVIPVLEVPPSA 180

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S V+  +PH   P P   L  L ++  +AF +RRKTLR SL  L     L +
Sbjct: 181 FKPAPKVDSAVVRLVPHKVLPYPVKDLYWLNRVCTQAFNQRRKTLRNSLMDLFTAEQLVE 240

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDIA 283
             I+   RAENL+I D+ R+ N L DN  +A
Sbjct: 241 LEIKLTDRAENLTIADYARLANWLADNPPLA 271


>gi|327462724|gb|EGF09046.1| dimethyladenosine transferase [Streptococcus sanguinis SK1057]
          Length = 290

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 147/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAESAA-EVMAFEIDDRLVPILADTLRNFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFVVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +  +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSYFGKSEATKGKLTAALERTDLSPSVRGEALSLEEFARLADALKS 287


>gi|109899726|ref|YP_662981.1| dimethyladenosine transferase [Pseudoalteromonas atlantica T6c]
 gi|109702007|gb|ABG41927.1| dimethyladenosine transferase [Pseudoalteromonas atlantica T6c]
          Length = 268

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 95/269 (35%), Positives = 140/269 (52%), Gaps = 7/269 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D  I+ +I  +     G  V+EIG G G LT+ +  L   K+ 
Sbjct: 4   QHLGHTARKRFGQNFLHDPYIIDQIVSAINPQVGQNVVEIGPGLGALTEPVCEL-IDKLT 62

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+     L+       ++L I++ DALK DF + F+   P+R+  NLPYNI T L+
Sbjct: 63  VVELDRDLAQRLR-THPFIASKLNIVEKDALKFDFSELFSEEHPLRVFGNLPYNISTPLM 121

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+  S   +    + +  + QKEV  R+ A   + +YGRLSV+  +      +  + P  
Sbjct: 122 FHLFS---FAHKVQDMHFMLQKEVVNRLAASPGNKNYGRLSVMAQYHCHIMPVIHVPPGA 178

Query: 195 FFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S V+  IPH   P+     E+L ++  +AF +RRKT+R SLK    E  L  
Sbjct: 179 FNPPPKVDSAVVRLIPHKVRPVEVKSEEALNRVCAQAFNQRRKTIRNSLKESLSEAQLIS 238

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQD 281
             I   LRAENLS+  F +I ++    Q+
Sbjct: 239 LDINPELRAENLSLAQFGQIADLAFSTQE 267


>gi|255283478|ref|ZP_05348033.1| dimethyladenosine transferase [Bryantella formatexigens DSM 14469]
 gi|255265935|gb|EET59140.1| dimethyladenosine transferase [Bryantella formatexigens DSM 14469]
          Length = 298

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 147/287 (51%), Gaps = 19/287 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           ++N  +++  ++  Y+   +K  GQNFL+D ++L KI  ++       V+EIG G G +T
Sbjct: 4   LSNPQNTI-AVIQKYEFAFQKKFGQNFLIDGHVLDKIIAAADITKEDFVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    A +V+ +E D+   PIL +  + + N +EI+ +D LKVD        N   PI
Sbjct: 63  QYLSE-AAGRVLAVEIDKMLIPILHETLAGYEN-VEILNEDILKVDIAALVEEKNGGKPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++   +         +S+T++ QKEV +R+ AQ  S  YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLLEQHVP---VKSITVMVQKEVAQRMQAQPGSKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTL 237
           +  +  +  ++ P+ F P PKV S VI    H  P       + +  + + +F +RRKTL
Sbjct: 178 YYCEPYIAANVPPNCFIPRPKVGSAVIRLTAHREPPVKTEHEKLMFALIRASFNQRRKTL 237

Query: 238 RQSLKRL----GGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276
              L         +      + + G+   +R E L++E F ++ NIL
Sbjct: 238 ANGLSNAPELTFTKEEITGAIEKLGVPAGVRGETLALEQFAQLANIL 284


>gi|322377595|ref|ZP_08052085.1| dimethyladenosine transferase [Streptococcus sp. M334]
 gi|321281360|gb|EFX58370.1| dimethyladenosine transferase [Streptococcus sp. M334]
          Length = 290

 Score =  291 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPA 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADALK 286


>gi|253576891|ref|ZP_04854216.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843758|gb|EES71781.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 298

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 88/295 (29%), Positives = 146/295 (49%), Gaps = 22/295 (7%)

Query: 1   MTMNNKSHSLK---TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M++     + +    I+  +    KK +GQNFL+D NIL KI  ++        +EIG G
Sbjct: 1   MSIREDVSTPRRTKEIIQRHGFSFKKSLGQNFLIDQNILGKIVAAAELEKTQGALEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS- 116
            G LT+ L    A KV  +E DQ+  PIL+++   +P+ + +I  D LK+D +  F    
Sbjct: 61  IGALTEKLAQE-AGKVAAVEIDQRLLPILQEVLEPYPH-VHVIHGDVLKLDLKALFAAEF 118

Query: 117 ---SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
              S + ++ANLPY + T ++   +         + + ++ QKEV ER+ A      YG 
Sbjct: 119 SGVSGVSVVANLPYYVTTPIMMKLLEEKLP---LKHIVVMIQKEVAERMAATPGGKDYGS 175

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFG 231
           LS+   + +   M+  +   VF P P V S VI       P     +     ++ Q +F 
Sbjct: 176 LSIAVQYYSTPEMICTVPHSVFIPQPNVESAVIRLTVREKPAVAVQDEAFFFEVVQASFA 235

Query: 232 KRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +RRKT+  +LK            E LL +AGI+ + RAE LS+++F ++++ L +
Sbjct: 236 QRRKTISNNLKSRFFPKEGRERLEQLLEEAGIQPSRRAETLSLDEFAKLSDTLLN 290


>gi|187732780|ref|YP_001878864.1| dimethyladenosine transferase [Shigella boydii CDC 3083-94]
 gi|226732626|sp|B2U259|RSMA_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|187429772|gb|ACD09046.1| dimethyladenosine transferase [Shigella boydii CDC 3083-94]
          Length = 273

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L   G++  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMGLDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|227544731|ref|ZP_03974780.1| dimethyladenosine transferase [Lactobacillus reuteri CF48-3A]
 gi|300909023|ref|ZP_07126486.1| dimethyladenosine transferase [Lactobacillus reuteri SD2112]
 gi|227185271|gb|EEI65342.1| dimethyladenosine transferase [Lactobacillus reuteri CF48-3A]
 gi|300894430|gb|EFK87788.1| dimethyladenosine transferase [Lactobacillus reuteri SD2112]
          Length = 297

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 98/296 (33%), Positives = 158/296 (53%), Gaps = 27/296 (9%)

Query: 3   MNNKS-----HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M+N          + I+  Y I  KK  GQNFL DLN+LK I E++       VIEIG G
Sbjct: 1   MSNSPEIGSRTRTRAIMEKYGIRTKKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---- 113
            G LT+ L    A +V+ +E DQ   P+LK++ S + N +++I  D L+ +  +      
Sbjct: 61  IGALTEQLA-QAAGEVLALEIDQDLIPVLKEVLSPYDN-VKVINQDVLQANLPELIKKEF 118

Query: 114 -NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
            + S PI+++ANLPY I + +L N +++   P  W ++ ++ QKEV +R+TA+  +  YG
Sbjct: 119 KDPSRPIKVVANLPYYITSPILMNLLAS---PVEWATICVMMQKEVAQRLTAKPGTKQYG 175

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEA 229
            L++   ++ +A + FD+S  VF PSP V S ++   P  NP+P      + L    +  
Sbjct: 176 ELTLAIEYQMQAKIAFDVSRKVFVPSPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGC 235

Query: 230 FGKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           F  RRK+L  +L+ + G++         +L Q  I   +R E L++E F  + N L
Sbjct: 236 FAHRRKSLWNNLQSVIGKDPAVKEKMTAVLAQLDISPQIRPEKLTLEQFIELANAL 291


>gi|324989790|gb|EGC21733.1| dimethyladenosine transferase [Streptococcus sanguinis SK353]
 gi|325686620|gb|EGD28646.1| dimethyladenosine transferase [Streptococcus sanguinis SK72]
          Length = 290

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADALKS 287


>gi|15603074|ref|NP_246146.1| dimethyladenosine transferase [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|27151601|sp|Q9CLL5|RSMA_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|12721563|gb|AAK03293.1| KsgA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 288

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 89/273 (32%), Positives = 140/273 (51%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D N++  I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDNNVIHGIVSAIYPQKDQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------NISSPIRIIANLPYN 128
           V+E D+     L+     H +++ +I+ DA++ DF + +           +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLH-HKITVIETDAMQFDFGQLYRDANLAEKKQKMRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHDC---IQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  +PH         L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPTAFKPAPKVDSAVVRLVPHKVLPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            + L + GI+   RAENLSI D+ R+ N LTDN
Sbjct: 240 ADQLTELGIDLTARAENLSIADYARLANWLTDN 272


>gi|307705634|ref|ZP_07642485.1| dimethyladenosine transferase [Streptococcus mitis SK597]
 gi|307620810|gb|EFN99895.1| dimethyladenosine transferase [Streptococcus mitis SK597]
          Length = 290

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 149/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     KI++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDESFFFKISKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADALK 286


>gi|322386716|ref|ZP_08060340.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
 gi|321268998|gb|EFX51934.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
          Length = 290

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 94/294 (31%), Positives = 148/294 (50%), Gaps = 21/294 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVKDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KTL  +L    G+           L QA +  ++R E L++ DF R+ + L + 
Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLTAALEQAELSPSVRGEALTLADFARLADALKEQ 288


>gi|261867179|ref|YP_003255101.1| dimethyladenosine transferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412511|gb|ACX81882.1| dimethyladenosine transferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 287

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 90/273 (32%), Positives = 135/273 (49%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D N+++ I  +        ++EIG G G LT+ +       + 
Sbjct: 5   KHLGHTARKRFGQNFLHDNNVIQNIVAAIYPQPNQFLVEIGPGLGALTEPVAEQ-VEHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+        +  +I+ DA++ DF      E+       +R+  NLPYN
Sbjct: 64  VLELDRDLAERLRHH-PFLNQKFTVIETDAMQFDFSALYEQEQLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFHYH---HIIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +   L  
Sbjct: 180 EVPPSAFKPVPKVDSAVVRLIPHATLPHPVKDLYWLNRVCSQAFNQRRKTLRNAFSGLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENLSI D+ R+ N L DN
Sbjct: 240 AGNLTALGIDLNARAENLSIADYARLANWLADN 272


>gi|225857560|ref|YP_002739071.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031]
 gi|254807890|sp|C1CMT3|RSMA_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225725962|gb|ACO21814.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031]
 gi|301794926|emb|CBW37388.1| dimethyladenosine transferase [Streptococcus pneumoniae INV104]
 gi|332199997|gb|EGJ14071.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47901]
          Length = 290

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPVPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+E+F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLADALK 286


>gi|68249146|ref|YP_248258.1| dimethyladenosine transferase [Haemophilus influenzae 86-028NP]
 gi|145635368|ref|ZP_01791070.1| dimethyladenosine transferase [Haemophilus influenzae PittAA]
 gi|81336447|sp|Q4QMZ9|RSMA_HAEI8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|68057345|gb|AAX87598.1| dimethyladenosine transferase [Haemophilus influenzae 86-028NP]
 gi|145267374|gb|EDK07376.1| dimethyladenosine transferase [Haemophilus influenzae PittAA]
          Length = 287

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFDELYTTENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|311696169|gb|ADP99042.1| dimethyladenosine transferase [marine bacterium HP15]
          Length = 276

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 91/271 (33%), Positives = 145/271 (53%), Gaps = 8/271 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           +      +K  GQNFL D  ++++I  +        ++EIG G G LT+ +L +   K+ 
Sbjct: 3   NKAGHQARKRFGQNFLHDPGVIEQIIRAINPKPDDAIVEIGPGLGALTEEILAVNP-KLQ 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   P+L+     +P    I + DALK DF +   +  P+RII NLPYNI T L+
Sbjct: 62  VVELDRDLIPVLRTKFFNYPE-FRIHEADALKFDFSQLM-VDRPLRIIGNLPYNISTPLI 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +S        + +  + QKEV +R+ A     +YGRL ++T +  +   +F++ P  
Sbjct: 120 FHLLSQAG---VVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCRVQPLFEVGPGA 176

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S ++  +PH   P P   L +L+ + + AF  RRKTLR++L  +     L  
Sbjct: 177 FRPAPKVDSAIVRLVPHKTLPHPAKDLTTLQAVVRTAFNARRKTLRKALGGMVSAEQLRS 236

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            GI   LR ENL++ DF  I ++L   +  A
Sbjct: 237 LGINDGLRPENLALADFVAIADLLFTEKGAA 267


>gi|153815218|ref|ZP_01967886.1| hypothetical protein RUMTOR_01452 [Ruminococcus torques ATCC 27756]
 gi|317502323|ref|ZP_07960492.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089927|ref|ZP_08338819.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847477|gb|EDK24395.1| hypothetical protein RUMTOR_01452 [Ruminococcus torques ATCC 27756]
 gi|316896279|gb|EFV18381.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403159|gb|EGG82720.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 292

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 149/293 (50%), Gaps = 19/293 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y  I +K  GQNFL+D ++L KI  ++       V+EIG G G +
Sbjct: 5   TLGNPQNTI-AVLQKYNFIFQKKFGQNFLIDTHVLDKIIRAAEIGKDDLVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    A KVI +E D+   PIL+D    + N + +I +D LKVD  K     N   P
Sbjct: 64  TQYLSC-AAGKVIAVEIDRALIPILEDTLDGYDN-VRVINEDVLKVDIRKLVEEENEGRP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++             +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 IKVVANLPYYITTPIIMGLFENHVP---IKSITVMVQKEVADRMQVGPGTKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKT 236
            +  K  ++ ++ P+ F P PKV S VI    H +P       + + ++ + +F +RRKT
Sbjct: 179 QYYAKPYIVANVPPNCFMPRPKVGSAVIRLERHEHPPVEVRDEKLMFRVIRASFNQRRKT 238

Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           L   LK            E  + + G   ++R E L++ +F ++ N   D ++
Sbjct: 239 LANGLKNSPEIDFSKEEIEGAIEKLGKGASVRGEALTLAEFAQLANYFCDLRE 291


>gi|332360011|gb|EGJ37825.1| dimethyladenosine transferase [Streptococcus sanguinis SK1056]
          Length = 290

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKV+      +F N  
Sbjct: 60  LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVNLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSYFGKSEETKGKLTAALERAELSPSVRGEALSLEEFARLADALKS 287


>gi|283797637|ref|ZP_06346790.1| dimethyladenosine transferase [Clostridium sp. M62/1]
 gi|291074750|gb|EFE12114.1| dimethyladenosine transferase [Clostridium sp. M62/1]
          Length = 310

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 148/289 (51%), Gaps = 19/289 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N   ++  I+  Y    +K  GQNFL+D+++L KI  ++G      V+EIG G G +T
Sbjct: 28  LGNPQKTI-QIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMT 86

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    A++V+ +E D    PIL +  + + N + +I  D LKVD +K    +N   PI
Sbjct: 87  QYLAES-AKQVVAVEIDTNLIPILSETLAGYDN-VTVINQDILKVDIKKLAEEYNGGRPI 144

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +++T++ QKEV +R+     S  YG LS+   
Sbjct: 145 KVVANLPYYITTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQ 201

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237
           +  +  ++ ++ P+ F P P V S VI    H  P       + + K+ + +F +RRKTL
Sbjct: 202 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRHKKPPVEVKNRDLMFKLIRASFNQRRKTL 261

Query: 238 RQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              L                + Q G+  ++R E L++E F R++++L +
Sbjct: 262 LNGLNNSPEIPIGKEKIAAAIEQLGVPASVRGEALTLEQFARLSDLLEE 310


>gi|148985565|ref|ZP_01818754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71]
 gi|147922285|gb|EDK73406.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71]
 gi|301800746|emb|CBW33394.1| dimethyladenosine transferase [Streptococcus pneumoniae OXC141]
          Length = 290

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAE-CAAQVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|325697392|gb|EGD39278.1| dimethyladenosine transferase [Streptococcus sanguinis SK160]
          Length = 290

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLTQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVAVQDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L ++ +  ++R E LS+E+F R+ + L  
Sbjct: 235 KTLWNNLTSCFGKSEETKGKLTAALERSELSPSVRGEALSLEEFARLADALKS 287


>gi|150387987|ref|YP_001318036.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF]
 gi|166987687|sp|A6TJK9|RSMA_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|149947849|gb|ABR46377.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF]
          Length = 287

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 142/292 (48%), Gaps = 17/292 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M         K I+  YK    K +GQNFL+D NIL+ I + +       VIEIG G G 
Sbjct: 1   MDKIVSPSKTKAIVEKYKFRFSKSLGQNFLIDQNILEDIVDGADIQPDDCVIEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117
           LTQ +    A KV+ IE D+   PILK   + + N +E+I  D LKVD  +         
Sbjct: 61  LTQFIAE-KAHKVVAIEIDRNLIPILKHTLADYQN-VEVINQDVLKVDLHQLIADKFEGK 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P+++IANLPY + T ++  ++         +SL ++ QKEV  R+ A   +  YG LS+ 
Sbjct: 119 PVKVIANLPYYVTTPIVMRFLEEKVP---VDSLVIMIQKEVAVRMQAGPGTKDYGALSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRK 235
             +     ++  + P VF P PKV S VI    +  P       + +  + ++AFGKRRK
Sbjct: 176 VQYYCNPEILLKVPPSVFIPQPKVESIVIKLQVYPEPKVKVERDDLMFALVKDAFGKRRK 235

Query: 236 TLRQS-------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           TL  +       L +      L  A I+ N R E L+IE++  +T  +   Q
Sbjct: 236 TLLNALSSGLLQLSKEIVRESLEAANIDENRRGETLTIEEYATLTKEVAARQ 287


>gi|52424685|ref|YP_087822.1| dimethyladenosine transferase [Mannheimia succiniciproducens
           MBEL55E]
 gi|62900507|sp|Q65UX3|RSMA_MANSM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|52306737|gb|AAU37237.1| KsgA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 288

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/273 (34%), Positives = 142/273 (52%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D N+++ I  +     G  ++EIG G G LT+ +     R + 
Sbjct: 5   RHLGHTARKRFGQNFLHDDNVIQGIVAAIYPQKGQFLVEIGPGLGALTEPVADQTDR-LT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAQRLRHHPFLHQ-KLNVIETDAMQFDFGKLYEDEHLAEQGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+ +    +    + +  + QKEV +R+ A  NS  YGRL+++T +  +   + 
Sbjct: 123 ISTPLIFHLLK---FYDKIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMTQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++T +AF +RRKTLR +L  L  
Sbjct: 180 EVPPTAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVTSQAFNQRRKTLRNALSTLFT 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L    I+   RAENLSI D+ R+ N L DN
Sbjct: 240 PEQLTALNIDLTARAENLSIADYARLANWLADN 272


>gi|307707668|ref|ZP_07644148.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261]
 gi|307616280|gb|EFN95473.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261]
          Length = 290

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKV+  +    F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVNLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFASLADALK 286


>gi|15903841|ref|NP_359391.1| dimethyladenosine transferase [Streptococcus pneumoniae R6]
 gi|116515767|ref|YP_817204.1| dimethyladenosine transferase [Streptococcus pneumoniae D39]
 gi|168492040|ref|ZP_02716183.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04]
 gi|33516933|sp|Q8DND3|RSMA_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122277950|sp|Q04II4|RSMA_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|15459484|gb|AAL00602.1| Dimethyladenosine transferase [Streptococcus pneumoniae R6]
 gi|116076343|gb|ABJ54063.1| dimethyladenosine transferase [Streptococcus pneumoniae D39]
 gi|183573705|gb|EDT94233.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04]
          Length = 290

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|225386275|ref|ZP_03756039.1| hypothetical protein CLOSTASPAR_00018 [Clostridium asparagiforme
           DSM 15981]
 gi|225047554|gb|EEG57800.1| hypothetical protein CLOSTASPAR_00018 [Clostridium asparagiforme
           DSM 15981]
          Length = 303

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 143/290 (49%), Gaps = 19/290 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N   ++  I+  Y+ + +K  GQNFL+D ++L KI  ++G      V+EIG G G +T
Sbjct: 19  LGNPKETI-EIIQKYQFVFQKKFGQNFLIDPHVLDKIITAAGIGPEDCVLEIGPGIGTMT 77

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPI 119
           Q L    AR+VI +E D    PIL +    + N + +I DD LKVD  +  +      PI
Sbjct: 78  QYLAEH-ARQVIAVEIDANLIPILGETLKDYSN-VTVINDDILKVDINRLVDEHNGGKPI 135

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +++T++ QKEV +R+     S  YG LS+   
Sbjct: 136 KVVANLPYYITTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQ 192

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           +     ++ ++ P+ F P P V S VI    +  P         + ++ + +F +RRKTL
Sbjct: 193 YYASPYIVANVPPNCFIPRPNVGSAVIRLTRYKEPPVRVTDPALMFRLIRASFNQRRKTL 252

Query: 238 RQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +  L                +   G+  ++R E L++E F  + N  T++
Sbjct: 253 QNGLNNSPELAYTKENIAEAIAGLGLPASVRGEALTLEQFAALANYFTEH 302


>gi|312863719|ref|ZP_07723957.1| dimethyladenosine transferase [Streptococcus vestibularis F0396]
 gi|322515990|ref|ZP_08068928.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC
           49124]
 gi|311101255|gb|EFQ59460.1| dimethyladenosine transferase [Streptococcus vestibularis F0396]
 gi|322125525|gb|EFX96866.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC
           49124]
          Length = 290

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/293 (33%), Positives = 156/293 (53%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116
           LT+ L    A +V+  E D++  PIL+D    H N +++I +D LK D +    +F N +
Sbjct: 60  LTEFLAENAA-EVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +E   ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FEEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFVVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI DF R+++ L +
Sbjct: 235 KTLWNNLTSHFGKSEEVKNKLEQALENATIKPSIRGEALSISDFARLSDALRE 287


>gi|328956557|ref|YP_004373943.1| dimethyladenosine 16S ribosomal RNA transferase [Carnobacterium sp.
           17-4]
 gi|328672881|gb|AEB28927.1| dimethyladenosine 16S ribosomal RNA transferase [Carnobacterium sp.
           17-4]
          Length = 297

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 143/287 (49%), Gaps = 20/287 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K I+  Y    KK +GQNF++D NIL  I  +S       VIE+G G G LT+ L 
Sbjct: 10  PSRTKEIMEKYGFSVKKSLGQNFIVDPNILNNIVAASNIDKNTNVIEVGPGIGALTEHLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              +++VI  E D +  P+L D  S + N + I+  D LK++      +  ++  P+ ++
Sbjct: 70  -RASKEVIAFEIDNRLLPVLADTLSPYDN-VSIVHSDVLKINLQKTLPEMIDLDEPLVVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ +++     P   + LT++ QKEV ERITA   S  YG LS+   +  
Sbjct: 128 ANLPYYITTPIIMHFLET---PVRIDGLTIMMQKEVAERITAAPGSKAYGSLSIAIQYYM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +A + F +   VF P P V S +I       P       +S   + + AF +RRKTL  +
Sbjct: 185 EAEVAFIVPKTVFVPQPNVDSAIIKLTRRATPSVTVKNEKSFFALVRSAFVQRRKTLWNN 244

Query: 241 LKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L    G+           L  A I+   R E LS+E+F R+++ + +
Sbjct: 245 LLIRYGKEDSTREKLTQALEAASIDPKRRGETLSLEEFGRLSDAIDE 291


>gi|196250755|ref|ZP_03149442.1| dimethyladenosine transferase [Geobacillus sp. G11MC16]
 gi|196209705|gb|EDY04477.1| dimethyladenosine transferase [Geobacillus sp. G11MC16]
          Length = 478

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 20/282 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL+ Y    KK +GQNFL+D NIL+KI +++G       IEIG G G LT+ L    
Sbjct: 196 TKEILARYGFSFKKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARR- 254

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A+KV+  E D +  PIL D  S + N + II  D LK D      + F   S   ++ANL
Sbjct: 255 AKKVVAFEIDSRLLPILADTLSAYDN-VRIIHQDVLKADLHAVIAEEFAEVSDRMVVANL 313

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++          + ++ QKEV +R+ A+  +  YG L++   + T+A 
Sbjct: 314 PYYVTTPIIMKLLTERLP---IRGMVVMMQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 370

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSL-- 241
           ++  +   VF P P V S VI      +P       E   ++ + +F +RRKTL  +L  
Sbjct: 371 VVMTVPRTVFMPQPNVDSAVIRLTKRSHPPVAVEDEEVFFQVVRASFAQRRKTLLNNLLN 430

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                  K+   E  L   GI+   R E L + +F  ++N L
Sbjct: 431 NLPDGKEKKEQIERALDAVGIDPRRRGETLDMAEFASLSNAL 472


>gi|293391018|ref|ZP_06635352.1| dimethyladenosine transferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951552|gb|EFE01671.1| dimethyladenosine transferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 287

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 137/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D N+++ I  +        ++EIG G G LT+ +       + 
Sbjct: 5   KHLGHTARKRFGQNFLHDNNVIQNIVAAIYPQPNQFLVEIGPGLGALTEPVAEQ-VEHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E+       +R+  NLPYN
Sbjct: 64  VLELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFSSLYEQERLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFHYH---HIIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +   L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHATLPHPVKDLYWLNRVCSQAFNQRRKTLRNAFSGLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI  N RAENLSI D+ R+ N L DN
Sbjct: 240 AGNLTALGINLNARAENLSIADYARLANWLADN 272


>gi|111658871|ref|ZP_01409492.1| hypothetical protein SpneT_02000042 [Streptococcus pneumoniae
           TIGR4]
 gi|148993153|ref|ZP_01822719.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68]
 gi|149021935|ref|ZP_01835922.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72]
 gi|168489990|ref|ZP_02714189.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195]
 gi|221232709|ref|YP_002511863.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC
           700669]
 gi|225861802|ref|YP_002743311.1| dimethyladenosine transferase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230181|ref|ZP_06963862.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255257|ref|ZP_06978843.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503755|ref|YP_003725695.1| dimethyladenosine transferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|27151593|sp|Q97NN5|RSMA_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807887|sp|B8ZNY9|RSMA_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807891|sp|C1CTN9|RSMA_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|147928127|gb|EDK79145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68]
 gi|147929973|gb|EDK80961.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72]
 gi|183571617|gb|EDT92145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195]
 gi|220675171|emb|CAR69755.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC
           700669]
 gi|225727338|gb|ACO23189.1| dimethyladenosine transferase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298239350|gb|ADI70481.1| dimethyladenosine transferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389149|gb|EGE87495.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04375]
 gi|332072066|gb|EGI82553.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17570]
          Length = 290

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|225181539|ref|ZP_03734981.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
 gi|225167787|gb|EEG76596.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
          Length = 296

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 149/286 (52%), Gaps = 13/286 (4%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           +  +    +  +L  + +  KK  GQNFL+D NILKKI  ++       ++EIG G G+L
Sbjct: 12  SKLSSPGHVSRLLEQHGVKLKKKWGQNFLVDENILKKIISAADVQKSDRILEIGPGIGSL 71

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           TQ L    A +V+ +E D +  P+L++  +++ N +EII  DA+  D         P+++
Sbjct: 72  TQKLAE-NASRVLTVEIDTRLIPVLRETLAEYDN-VEIIHGDAMDFDPAPVCEEG-PVKL 128

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+ T LL+ W+        +  L  + QKEV ERI A+  S  YG LSV+  + 
Sbjct: 129 VANLPYNVATPLLYRWL--KDSRNCFSRLVCMVQKEVAERIVAKPGSKAYGTLSVICNYA 186

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            +  + FD+   VFFP P V+S V+  IP+  P           K+ +  F +RRKTL  
Sbjct: 187 ARCEIAFDVPRTVFFPRPDVSSAVVQLIPYHVPAEDVADDAFFFKVVEAVFAQRRKTLLN 246

Query: 240 SLKRLGG--ENLLH----QAGIETNLRAENLSIEDFCRITNILTDN 279
           +L       +  L        I+ + R E L++++F +++ +L + 
Sbjct: 247 TLNAAFPLTKEQLTAVCSAVEIDLSRRGETLTLQEFAKLSRVLYNK 292


>gi|332305311|ref|YP_004433162.1| dimethyladenosine transferase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172640|gb|AEE21894.1| dimethyladenosine transferase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 268

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/263 (34%), Positives = 137/263 (52%), Gaps = 7/263 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D  I+ +I  +    +G  V+EIG G G +T+ +  L   K+ 
Sbjct: 4   QHLGHTARKRFGQNFLHDPYIIDQIVSAINPQNGQNVVEIGPGLGAITEPVCEL-IDKLT 62

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+     L+       ++L I++ DALK DF + F+  +P+R+  NLPYNI T L+
Sbjct: 63  VVELDRDLAQRLR-THPFIASKLNIVEKDALKFDFSELFSEENPLRVFGNLPYNISTPLM 121

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+  S   +    + +  + QKEV  R+ A   + +YGRLSV+  +      +  + P  
Sbjct: 122 FHLFS---FAHKVQDMHFMLQKEVVNRLAASPGNKNYGRLSVMAQYHCHIMPVIHVPPGA 178

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S V+  IPH          E L ++  +AF +RRKT+R SLK    E  L  
Sbjct: 179 FNPPPKVDSAVVRLIPHKVRPVAVKSEEVLNRVCAQAFNQRRKTIRNSLKESVSEAQLLS 238

Query: 253 AGIETNLRAENLSIEDFCRITNI 275
             I   LRAENLS+  F +I ++
Sbjct: 239 LDINPELRAENLSLAQFGQIADL 261


>gi|306830179|ref|ZP_07463363.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249]
 gi|304427705|gb|EFM30801.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249]
          Length = 290

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 148/292 (50%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P           K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLIKALDQAGLSPSVRGEALSLAEFASLADALK 286


>gi|225859740|ref|YP_002741250.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585]
 gi|254807886|sp|C1CA29|RSMA_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225720605|gb|ACO16459.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585]
          Length = 290

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|240145093|ref|ZP_04743694.1| dimethyladenosine transferase [Roseburia intestinalis L1-82]
 gi|257202765|gb|EEV01050.1| dimethyladenosine transferase [Roseburia intestinalis L1-82]
          Length = 290

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/292 (32%), Positives = 149/292 (51%), Gaps = 19/292 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+    +++  +L  Y    +K  GQNFL+D ++L+KI E++G      V+EIG G G +
Sbjct: 3   TLGIPQNTI-AVLQKYHFNFQKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTM 61

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    AR+V  +E D    PIL+D  S + N + +I  D LK+D  K     N   P
Sbjct: 62  TQYLCE-NAREVTAVEIDTNLIPILEDTLSAYDN-VTVINQDILKLDIAKLAMERNGGKP 119

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +       +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 120 IKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLAV 176

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236
            +  K  ++ ++ P+ F P P V S VI    H   P+    E L   I + +F +RRKT
Sbjct: 177 QFYAKPEIVANVPPNCFMPRPNVGSAVIRLTRHEEVPVQVDDEKLMFHIIRASFNQRRKT 236

Query: 237 LRQSLKR-----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           L   L       L  E +   + + G    +R E L++E F  ++NI+ + Q
Sbjct: 237 LANGLSNAPQVHLSKEEIQECIAELGEPLTIRGEALTLEQFAALSNIIGNRQ 288


>gi|325663734|ref|ZP_08152138.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325470227|gb|EGC73460.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 298

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 151/288 (52%), Gaps = 19/288 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y    +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 5   TLGNPQNTI-AVLQKYNFSFQKKFGQNFLIDTHVLDKIIRSAEITKDDFVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    AR+V+ +E D+   PIL+D  S + N + +I +D LK+D  K     N   P
Sbjct: 64  TQYLAC-AAREVVAVEIDKALIPILEDTLSSYDN-VTVINEDVLKLDIVKLAQERNGGKP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +       +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---VQSITVMVQKEVADRMQVGPGTKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236
            +  K  +  ++ P+ F P PKV S VI    H  P       + + +I + +F +RRKT
Sbjct: 179 QYYAKPYIAANVPPNCFMPRPKVGSAVIRLECHEEPPVQVEDEKLMFRIIRASFNQRRKT 238

Query: 237 LRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L   LK        R G E  + + G   ++R E L++E+F  ++NI+
Sbjct: 239 LANGLKNSPEISLSREGIEQAIAELGKGASVRGEALNLEEFATLSNIV 286


>gi|319897933|ref|YP_004136130.1| s-adenosylmethionine-6-n',n'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae F3031]
 gi|317433439|emb|CBY81821.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae F3031]
          Length = 287

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVAEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|322391321|ref|ZP_08064791.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780]
 gi|321145747|gb|EFX41138.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780]
          Length = 290

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 148/292 (50%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAKPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P           K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E L +E+F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTDEVKDKLTKALDQAGLSPSVRGEALGLEEFASLADALK 286


>gi|145637409|ref|ZP_01793068.1| dimethyladenosine transferase [Haemophilus influenzae PittHH]
 gi|145269355|gb|EDK09299.1| dimethyladenosine transferase [Haemophilus influenzae PittHH]
          Length = 287

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/276 (33%), Positives = 139/276 (50%), Gaps = 13/276 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
              L   GI+ N RAENL+I D+ R+ N L DN   
Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADNSPA 275


>gi|293364728|ref|ZP_06611445.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
 gi|307702974|ref|ZP_07639921.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
 gi|291316178|gb|EFE56614.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
 gi|307623367|gb|EFO02357.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
          Length = 290

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 148/292 (50%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLTERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P           K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVKDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEIKDKLTKALDQAGLSPSVRGEALSLAEFASLADALK 286


>gi|255658924|ref|ZP_05404333.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544]
 gi|260848874|gb|EEX68881.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544]
          Length = 292

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/277 (31%), Positives = 142/277 (51%), Gaps = 13/277 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  + +   K +GQNFL+D  I++ I E++    G  V+EIG G G LTQ L   GA  
Sbjct: 22  ILKAFGLRMSKKLGQNFLIDARIVQGIVEAAEIEPGDRVLEIGPGIGTLTQGLAEAGAD- 80

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  +E D++   +LK+    + N + I+  D LKV+  +     +P ++ ANLPY I T 
Sbjct: 81  VTAVELDKKLPTVLKETLKAYDN-VRIVPGDILKVNIPEIMG-DAPFKVAANLPYYITTP 138

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +L   +           +  + Q+EV ER+TA+  S  YG LSV   + T+  ++ D+ P
Sbjct: 139 ILMTLLERRLP---ITHMVTMVQREVAERMTAKPGSRIYGALSVAVQYYTEPQIVLDVPP 195

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLK-----RLG 245
             F P+P+V S V+       P       +   ++ + AFG+RRKTL  +LK     +  
Sbjct: 196 RSFIPAPEVMSVVVSCRVRKEPAVAVQDEKLFFRVVKAAFGQRRKTLMNALKGGGFSKEA 255

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
             + L Q+GI+   R E L++E+F R+ +     ++ 
Sbjct: 256 VRDALEQSGIDPTRRGETLTLEEFGRLADAFAAEENA 292


>gi|330993925|ref|ZP_08317855.1| Ribosomal RNA small subunit methyltransferase A [Gluconacetobacter
           sp. SXCC-1]
 gi|329758871|gb|EGG75385.1| Ribosomal RNA small subunit methyltransferase A [Gluconacetobacter
           sp. SXCC-1]
          Length = 281

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/267 (41%), Positives = 164/267 (61%), Gaps = 6/267 (2%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+  ++ + +  +K +GQ+FLLD  I  +IA  +G L G  V+E+G GPG LT+ LL   
Sbjct: 13  LRETIARHGLDARKALGQHFLLDPGITARIAGLAGDLAGQNVVEVGPGPGGLTRALLDSE 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +V+ +E D +   I+ +++S+   RLE+I+ DA+++D        +P ++IANLPYN+
Sbjct: 73  AGRVVAVEVDTRAVAIITELASRAGGRLEVIEADAMRLDLTTL--CPAPRQVIANLPYNV 130

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT LL  W+        W  LTL+FQ+EV ERI A   S HYGRL VL  W  +  ++  
Sbjct: 131 GTPLLVGWLRQAAA---WTRLTLMFQQEVAERICAAPGSAHYGRLGVLAQWTCRCGVLMH 187

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           I P  F P P+V S V+  IPH + P      +++++T  AFG+RRK LR +LK LGGE+
Sbjct: 188 IPPGAFSPPPRVHSAVVGLIPHAHQPDAALFRAMEQVTAAAFGQRRKMLRGALKPLGGES 247

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNI 275
           LL +AGI+ + RAE L I +F R+  +
Sbjct: 248 LLAEAGIDGSRRAETLDIAEFDRLARL 274


>gi|145640522|ref|ZP_01796106.1| dimethyladenosine transferase [Haemophilus influenzae R3021]
 gi|145275108|gb|EDK14970.1| dimethyladenosine transferase [Haemophilus influenzae 22.4-21]
          Length = 287

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/276 (33%), Positives = 139/276 (50%), Gaps = 13/276 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
              L   GI+ N RAENL+I D+ R+ N L DN   
Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADNSPA 275


>gi|149012426|ref|ZP_01833457.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75]
 gi|147763482|gb|EDK70418.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75]
          Length = 290

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFACLADALK 286


>gi|56476032|ref|YP_157621.1| dimethyladenosine transferase [Aromatoleum aromaticum EbN1]
 gi|62900475|sp|Q5P7J1|RSMA_AROAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56312075|emb|CAI06720.1| dimethyladenosine transferase [Aromatoleum aromaticum EbN1]
          Length = 265

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/268 (35%), Positives = 144/268 (53%), Gaps = 11/268 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D NI++KI ++   + G TV+EIG G G +T  L+      + V+E 
Sbjct: 4   HRARKRFGQNFLSDPNIIRKIIDAIHPVPGETVVEIGPGLGAMTDPLVERLGH-LHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L +  S  P RL I + DALK D   F  + +P+R++ NLPYNI T LLF+  
Sbjct: 63  DRDLIARLHERYS--PERLTIHEGDALKFD---FATLGAPLRVVGNLPYNISTPLLFHL- 116

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +      +T + QKEV  R+ A+  +  YGRLSV+  +R +   +FD+ P  F P+
Sbjct: 117 --AEFAARVRDMTFMLQKEVVMRMVAEPGTEDYGRLSVMLQYRFRMGRLFDVPPGAFRPA 174

Query: 199 PKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKVTS+++  +P             L+++   AFG+RRKTLR +L+    E      GI+
Sbjct: 175 PKVTSSIVRMVPLPAEQRTAKDEALLERVVAAAFGQRRKTLRNTLREWLDEADFPALGID 234

Query: 257 TNLRAENLSIEDFCRITNILTDNQDIAI 284
             LR E L++ D+  ITN +      A+
Sbjct: 235 PGLRGERLTVADYVAITNYIAAKSPRAL 262


>gi|152978411|ref|YP_001344040.1| dimethyladenosine transferase [Actinobacillus succinogenes 130Z]
 gi|150840134|gb|ABR74105.1| dimethyladenosine transferase [Actinobacillus succinogenes 130Z]
          Length = 288

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/273 (34%), Positives = 144/273 (52%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D N+++ I  +     G  ++EIG G G LT+ +     R + 
Sbjct: 6   RHLGHTARKRFGQNFLHDDNVIQSIVAAIYPQKGQFLVEIGPGLGALTEPVADRLER-LT 64

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------NISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF K +           +R+  NLPYN
Sbjct: 65  VVELDRDLAERLRHHPFLHQ-KLNVIEADAMQFDFGKLYADANLAEQGQKLRVFGNLPYN 123

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+ +    +    + +  + QKEV +R+ A  NS  YGRL+++T +  +   + 
Sbjct: 124 ISTPLIFHLLK---FYDKIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMTQYFCQVMPVL 180

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++T +AF +RRKTLR +L  L  
Sbjct: 181 EVPPTAFKPAPKVDSAVVRLIPHKTLPHPAKDLYWLNRVTSQAFNQRRKTLRNALSTLFS 240

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   G++   RAENL+I D+ R+ + L DN
Sbjct: 241 PENLTALGVDLTARAENLTIADYVRLADWLYDN 273


>gi|323140326|ref|ZP_08075258.1| dimethyladenosine transferase [Phascolarctobacterium sp. YIT 12067]
 gi|322415184|gb|EFY05971.1| dimethyladenosine transferase [Phascolarctobacterium sp. YIT 12067]
          Length = 283

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/272 (34%), Positives = 138/272 (50%), Gaps = 13/272 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  +K+   K +GQNFL+D NI+++I E++       V+E+G G G LTQ L   GA  
Sbjct: 15  ILHRFKLRADKKLGQNFLIDENIVRRIVEAAELSPADKVLEVGPGIGTLTQGLAESGAD- 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V+ +E D++  P+L      + N + I+  D L+V+  +        ++ ANLPY I T 
Sbjct: 74  VVAVELDKRLLPVLDVTLEGYDN-VRIVNGDILQVNIMETVAAPE-FKVCANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++F  +         E L  + QKEV ER+ A+  S  YG LSV   + T+  + F + P
Sbjct: 132 IIFALLEKRLP---MERLVAMVQKEVAERMAAKPGSRDYGALSVAIQYYTEPEIAFIVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG---- 246
             F P+P V S VI       P    C      +I + AF  RRK L  SLK +G     
Sbjct: 189 TSFIPAPAVDSAVIVCKRRSEPPVKVCDEALFFRIVKAAFSLRRKMLSNSLKNMGINSEQ 248

Query: 247 -ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
               L +AG++   RAE LS+EDF  +TN  +
Sbjct: 249 CSQWLQRAGVDGKRRAETLSLEDFAALTNTFS 280


>gi|182420084|ref|ZP_02951318.1| dimethyladenosine transferase [Clostridium butyricum 5521]
 gi|237669472|ref|ZP_04529452.1| dimethyladenosine transferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376121|gb|EDT73708.1| dimethyladenosine transferase [Clostridium butyricum 5521]
 gi|237654916|gb|EEP52476.1| dimethyladenosine transferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 281

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 147/285 (51%), Gaps = 12/285 (4%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+ K +  + ++  Y     K +GQNFL+D ++L  I + +   D   +IEIG G G LT
Sbjct: 1   MDLKDYKTQELVKKYNFKFSKSLGQNFLIDDSVLTDIVDGASVDDKDFIIEIGPGVGTLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             LL   A+KV  IE D    PIL++   +H N  ++I +DALKVDF         ++++
Sbjct: 61  AKLLM-KAKKVTSIELDNDLIPILQEELGEHEN-FDLIHNDALKVDFNSLIGDEPSVKLV 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   +        ++SLT++ QKEV ERI A+ N   YG LSVL  +  
Sbjct: 119 ANLPYYVTTPIIVKLLKD---GYNFKSLTIMIQKEVAERINAEPNCKEYGALSVLVQYYC 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ- 239
             +++  ++P  F P PKV S VI       P         +  + +  F  RRKTL   
Sbjct: 176 NTSIVRRVAPSCFIPRPKVESIVIRLDRLEAPRVNVKDENLMFALVRAGFNMRRKTLWNA 235

Query: 240 ----SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
               +L +   E    ++GI+   RAE LSIE+F  +++ + D +
Sbjct: 236 TKTFNLSKEKLEEAFEKSGIDPKRRAETLSIEEFAHLSDCIYDAK 280


>gi|290581127|ref|YP_003485519.1| dimethyladenosine transferase [Streptococcus mutans NN2025]
 gi|254998026|dbj|BAH88627.1| dimethyladenosine transferase [Streptococcus mutans NN2025]
          Length = 291

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 149/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K+ + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MHIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +   IL D      N ++++ +D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVSILADTLRDFDN-IKVVNEDILKSDLQTRIKEFANPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      +   ++ + AF  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQPLVQVQDEDFFFRVGKAAFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E L+I DF R+ + L +
Sbjct: 235 KTLWNNLTSHFGKSKEVKVKLEQALEAADIKPSIRGEALTITDFARLADALRE 287


>gi|260596475|ref|YP_003209046.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Cronobacter turicensis z3032]
 gi|260215652|emb|CBA27949.1| Dimethyladenosine transferase [Cronobacter turicensis z3032]
          Length = 273

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 142/280 (50%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+ +DF +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMDFGELSQKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYF 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH  P      L  L ++T EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPTAFTPPPKVDSAVVRLVPHATPPHPVKELRLLSRLTTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  +   ++L   G++  +RAEN+S+  +C++ N L DN
Sbjct: 228 SLGNVFTPDVLVSLGVDPAMRAENISVAQYCQMANYLADN 267


>gi|52078537|ref|YP_077328.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580]
 gi|52783899|ref|YP_089728.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580]
 gi|319648566|ref|ZP_08002780.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2]
 gi|62900505|sp|Q65PH9|RSMA_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|52001748|gb|AAU21690.1| dimethyladenosine transferase [Bacillus licheniformis ATCC 14580]
 gi|52346401|gb|AAU39035.1| KsgA [Bacillus licheniformis ATCC 14580]
 gi|317389333|gb|EFV70146.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2]
          Length = 292

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 146/284 (51%), Gaps = 20/284 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL+ Y    KK +GQNFL+D NIL +I + +G  +   VIEIG G G LT+ L    
Sbjct: 11  TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A+KV   E DQ+  PIL+D  S + N + +I  D LK D     ++ F     + ++ANL
Sbjct: 70  AKKVTAFEIDQRLLPILEDTLSPYDN-VTVIHQDVLKADVRAVMDEQFQDCDEVMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   +  +      + + ++ QKEV +R+ A+ +S  YG LS+   + T+A 
Sbjct: 129 PYYVTTPIIMKLLEENLP---LKGIVVMLQKEVADRMAAKPSSKEYGSLSIAVQFYTEAK 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241
            + ++   VF P P V S VI       P     ++    ++ + +F +RRKTL  +L  
Sbjct: 186 TVMNVPKTVFVPQPNVDSAVIRLTLRKEPAVAVQDAAFFFQVVKASFAQRRKTLFNNLVN 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                   +   E  L  + I+   R E+LSIE+F  +++ L +
Sbjct: 246 NLPNGKENKSKIERALQDSHIDGKRRGESLSIEEFAVLSDRLRE 289


>gi|16272493|ref|NP_438707.1| dimethyladenosine transferase [Haemophilus influenzae Rd KW20]
 gi|145628930|ref|ZP_01784730.1| dimethyladenosine transferase [Haemophilus influenzae 22.1-21]
 gi|260580996|ref|ZP_05848819.1| dimethyladenosine transferase [Haemophilus influenzae RdAW]
 gi|1170712|sp|P44749|RSMA_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|1573534|gb|AAC22207.1| dimethyladenosine transferase (ksgA) [Haemophilus influenzae Rd
           KW20]
 gi|144979400|gb|EDJ89086.1| dimethyladenosine transferase [Haemophilus influenzae 22.1-21]
 gi|260092355|gb|EEW76295.1| dimethyladenosine transferase [Haemophilus influenzae RdAW]
          Length = 287

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|182684919|ref|YP_001836666.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14]
 gi|303254092|ref|ZP_07340207.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455]
 gi|303260358|ref|ZP_07346328.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293]
 gi|303262506|ref|ZP_07348448.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292]
 gi|303265137|ref|ZP_07351050.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397]
 gi|303266001|ref|ZP_07351896.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457]
 gi|303268067|ref|ZP_07353868.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458]
 gi|226732631|sp|B2IM67|RSMA_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|182630253|gb|ACB91201.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14]
 gi|301802662|emb|CBW35428.1| dimethyladenosine transferase [Streptococcus pneumoniae INV200]
 gi|302598925|gb|EFL65956.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455]
 gi|302636406|gb|EFL66899.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292]
 gi|302638524|gb|EFL68989.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293]
 gi|302642427|gb|EFL72773.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458]
 gi|302644442|gb|EFL74694.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457]
 gi|302645354|gb|EFL75588.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397]
          Length = 290

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-QVMTFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|308066864|ref|YP_003868469.1| Dimethyladenosine transferase [Paenibacillus polymyxa E681]
 gi|305856143|gb|ADM67931.1| Dimethyladenosine transferase [Paenibacillus polymyxa E681]
          Length = 294

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 145/286 (50%), Gaps = 19/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K I+  +    KK +GQNFL+D NIL KI  ++G  +    +EIG G G LT+ L 
Sbjct: 10  PRRTKDIIQRHGFSFKKSLGQNFLIDQNILNKIVNAAGLDETKGALEIGPGIGALTEKLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122
              A+ V  +E DQ+  PIL+++ + + + +++   D LK+D  + F       S + ++
Sbjct: 70  QS-AKAVTAVEIDQRLLPILEEVLAPYEH-VKVRHGDVLKLDLREVFAADFADVSKVSVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +L   +         E++ ++ QKEV ER+ A   +  YG LS+   + +
Sbjct: 128 ANLPYYVTTPILMRLLEDKLP---LENIVVMIQKEVAERMAASPGTKDYGSLSIAVQYYS 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +  ++  +   VF P P V S VI       P       +   ++   AF +RRKT+  +
Sbjct: 185 EPELVCIVPNTVFIPQPNVESAVIRLRVREAPPVEVVDEKHFFEVVHAAFAQRRKTISNN 244

Query: 241 LKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK            E LL QAGIE + R E LSIE+F R++ +L +
Sbjct: 245 LKSRFFTKENRDTLEPLLQQAGIEPSRRGETLSIEEFARLSAVLLE 290


>gi|145630268|ref|ZP_01786049.1| dimethyladenosine transferase [Haemophilus influenzae R3021]
 gi|144984003|gb|EDJ91440.1| dimethyladenosine transferase [Haemophilus influenzae R3021]
          Length = 287

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 140/273 (51%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFDELYTKENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENL+I D+ R+ N L+DN
Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLSDN 272


>gi|148825174|ref|YP_001289927.1| dimethyladenosine transferase [Haemophilus influenzae PittEE]
 gi|148827743|ref|YP_001292496.1| dimethyladenosine transferase [Haemophilus influenzae PittGG]
 gi|229845712|ref|ZP_04465834.1| dimethyladenosine transferase [Haemophilus influenzae 6P18H1]
 gi|229846634|ref|ZP_04466742.1| dimethyladenosine transferase [Haemophilus influenzae 7P49H1]
 gi|166221669|sp|A5U9U3|RSMA_HAEIE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221670|sp|A5UH57|RSMA_HAEIG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|148715334|gb|ABQ97544.1| dimethyladenosine transferase [Haemophilus influenzae PittEE]
 gi|148718985|gb|ABR00113.1| dimethyladenosine transferase [Haemophilus influenzae PittGG]
 gi|229810727|gb|EEP46445.1| dimethyladenosine transferase [Haemophilus influenzae 7P49H1]
 gi|229811354|gb|EEP47061.1| dimethyladenosine transferase [Haemophilus influenzae 6P18H1]
 gi|309972298|gb|ADO95499.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae R2846]
          Length = 287

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|300715279|ref|YP_003740082.1| Dimethyladenosine transferase [Erwinia billingiae Eb661]
 gi|299061115|emb|CAX58222.1| Dimethyladenosine transferase [Erwinia billingiae Eb661]
          Length = 279

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 138/280 (49%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  I+  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDQYIIDSIVSAIHPQKGEAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           + +       + VIE D+     L+        +L I Q DA+  DF ++       +R+
Sbjct: 53  EPVGERL-DAMTVIEIDRDLAARLQ-THPFLGPKLTIFQQDAMAFDFAEYAREKGQSLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S  T       +  + QKEV  R+ A   S  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFSYATA---IRDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH         +  L +IT EAFGKRRKTLR 
Sbjct: 168 CQVIPVLEVPPESFTPAPKVDSAVVRLMPHAKIEHPVTDMRVLTRITTEAFGKRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L    +L +  I+  LRAEN+++  +C++ N L  +
Sbjct: 228 SLGHLFSLEVLQEMNIDPTLRAENITVAQYCQLANWLIAH 267


>gi|327438098|dbj|BAK14463.1| dimethyladenosine transferase [Solibacillus silvestris StLB046]
          Length = 295

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 144/285 (50%), Gaps = 20/285 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL  Y    KK +GQNFL+D NIL+ I   +   +    IE+G G G LT+ L    
Sbjct: 11  TKEILEKYGFSFKKSLGQNFLIDPNILRNIVSHANLTENSGAIEVGPGIGALTEHLA-RE 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANL 125
           A+KV+  E DQ+  P+L+D  S + N ++I+  D LK D  +      P    I ++ANL
Sbjct: 70  AKKVVSFEIDQRLLPVLEDTLSPYDN-VKIVHSDILKADVAQVIEEEMPGIEDIMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T +L   ++            ++ QKEV +RITA+  +  YG LS+   +   A 
Sbjct: 129 PYYVTTPILMKLLNDRLP---IRGFVVMMQKEVADRITAKPGTKAYGSLSIAIQFYVTAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLK- 242
           +   +   VF P P V S VI  I H NP       + L ++++ +F +RRKT+  +L+ 
Sbjct: 186 IAMVVPKTVFMPQPNVDSAVIRLIKHENPPVKVIDEDFLFEVSRASFAQRRKTILNNLQN 245

Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                   +      L +AGIE + R E LSI++F ++ + L  +
Sbjct: 246 GLVNGKQNKELILKALEEAGIEPSRRGETLSIQEFGKLADCLYPH 290


>gi|307243374|ref|ZP_07525533.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM
           17678]
 gi|306493244|gb|EFM65238.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM
           17678]
          Length = 292

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 86/291 (29%), Positives = 145/291 (49%), Gaps = 17/291 (5%)

Query: 1   MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M     SHS    ++  +     K +GQNFL+D NI+ KI   +G   G  +IE+G G G
Sbjct: 1   MNKRLSSHSATMDLVKKHGFKFTKSLGQNFLIDDNIVDKIVAGAGIGPGDKIIEVGPGIG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---S 116
            LT+ + +  A  ++ +E D+   PIL D    + N ++I+ +D +K D     +     
Sbjct: 61  TLTREMASR-AEALMAVEIDKNLIPILADTLGDYDN-VKIVNEDIIKADIRGLIDENLGG 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P++++ANLPY I T ++  ++  +        + ++ QKEV ER+ AQ     +G LSV
Sbjct: 119 GPVKLVANLPYYITTPIIMRFLEENIN---VTDIVVMVQKEVAERMNAQPGGKDFGALSV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRR 234
              +     ++  +  H+F P P V S VI     P         +   K+ + AFG+RR
Sbjct: 176 AVQYYCDTEIVAKVPRHLFVPQPNVDSIVIALRVRPERKYKVDDEDLYFKVVKAAFGQRR 235

Query: 235 KTLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KTL  S+  +G       +  L +AGI+   R E LS+++F  ++N++ + 
Sbjct: 236 KTLLNSISSMGNLAKDQVKEALEEAGIDPKRRGETLSLDEFAILSNVIGNK 286


>gi|145633499|ref|ZP_01789228.1| dimethyladenosine transferase [Haemophilus influenzae 3655]
 gi|144985868|gb|EDJ92476.1| dimethyladenosine transferase [Haemophilus influenzae 3655]
          Length = 287

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 138/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQSNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L      H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLHHHPFLHQ-KLTVIETDAMQFDFDELYTTENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|119944805|ref|YP_942485.1| dimethyladenosine transferase [Psychromonas ingrahamii 37]
 gi|166221692|sp|A1STS1|RSMA_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119863409|gb|ABM02886.1| dimethyladenosine transferase [Psychromonas ingrahamii 37]
          Length = 270

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K+H             +K  GQNFL D  I+  I  +        ++EIG G G LT
Sbjct: 1   MNDKTH--------LGHTARKRFGQNFLHDDYIIDSIVGAIAPQWEDNIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +     + + VIE D+     L +      ++L I Q DAL+ DF K  +   P+R+ 
Sbjct: 53  EPVA-SKVKCLNVIELDRDLAARLAEH-PVLGDKLNITQADALQFDFGKLASTERPLRVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+             +  + QKEV  R+ A  N   YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFEYADK---ISDMHFMLQKEVVNRLCAGPNCKAYGRLTVMAQYYC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ P  F P+PKV S V+   P+  P      L+ L ++   AF +RRKT+R  
Sbjct: 168 RIIPVLEVPPTAFKPAPKVDSAVVRLEPYDTPPFIAKSLKCLTQVCSMAFNQRRKTIRNG 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           L+ L     L + GI+T  RAEN+S+E++  I N + D ++
Sbjct: 228 LRDLLSIEQLQEIGIDTTKRAENISVEEYVNIANYVFDLKE 268


>gi|302873237|ref|YP_003841870.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
 gi|307688596|ref|ZP_07631042.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
 gi|302576094|gb|ADL50106.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
          Length = 282

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 145/281 (51%), Gaps = 14/281 (4%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M N  +S K I+  Y     K +GQNFL D ++L  I   +   +   VIEIG G G LT
Sbjct: 1   MAN--NSTKDIVLKYNFKFTKSLGQNFLTDDSVLNDIVNGAEVNENDVVIEIGPGVGTLT 58

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A+KVI IE D    PIL++   +  N   +I  DA KVDF +       ++I+
Sbjct: 59  KELLG-KAKKVIAIEVDSSLIPILQEELKEFDN-FTLIHKDATKVDFNELIEGEDTVKIV 116

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++ + ++       + S+T++ QKEV +RI A  +S  YG L++L  +  
Sbjct: 117 ANLPYYVTTPIITDLLNKKYN---FTSITVMIQKEVADRINANPSSKEYGALTLLVQYYC 173

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQS 240
              ++  + P  F P PKV STVI       P  +    E   +I +++F  RRKTL   
Sbjct: 174 DTKIVRVVPPSCFIPQPKVDSTVIRLDKLPAPRAVVEDEELFFRIIRDSFNMRRKTLWNG 233

Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +K LG      E     A I+   R E LSIE+F +++N +
Sbjct: 234 MKGLGLEKELLEKAFADADIDPKRRGETLSIEEFAKLSNCV 274


>gi|260589447|ref|ZP_05855360.1| dimethyladenosine transferase [Blautia hansenii DSM 20583]
 gi|331084461|ref|ZP_08333563.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260540192|gb|EEX20761.1| dimethyladenosine transferase [Blautia hansenii DSM 20583]
 gi|330401324|gb|EGG80911.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 289

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/295 (30%), Positives = 149/295 (50%), Gaps = 22/295 (7%)

Query: 1   MT---MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT   + N   ++  +L  Y  + +K  GQNFL+D ++L KI  ++       V+EIG G
Sbjct: 1   MTAPYLGNPKRTI-EVLQKYDFVFQKKFGQNFLIDTHVLDKIISAAEITKEDFVLEIGPG 59

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-- 115
            G +TQ L    AR+V+ +E D+   PIL+D    + N + ++ +D LKVD +K  +   
Sbjct: 60  IGTMTQYLAC-AAREVVAVEIDKALIPILEDTLQDYSN-VTVLNEDILKVDIKKLADEHN 117

Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
              PI+++ANLPY I T ++      D      ES+T++ QKEV +R+     +  YG L
Sbjct: 118 NGKPIKVVANLPYYITTPIIMGLFEGDVP---IESITVMVQKEVADRMQVGPGTKEYGAL 174

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232
           S+   +  +  ++ ++ P+ F P PKV S VI    H  P     ++  + +I + +F +
Sbjct: 175 SLAVQYYAEPYIVANVPPNCFMPRPKVGSAVIRLTKHAEPPVEVFDTKLMFRIIRASFNQ 234

Query: 233 RRKTLRQSLKR-----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           RRKTL   L        G E +   +   G    +R E L++E+F  +TN     
Sbjct: 235 RRKTLANGLNNSPELSFGKEEIQRAIKACGFPEGIRGEALTLEEFAALTNEFKSK 289


>gi|331270584|ref|YP_004397076.1| dimethyladenosine transferase [Clostridium botulinum BKT015925]
 gi|329127134|gb|AEB77079.1| dimethyladenosine transferase [Clostridium botulinum BKT015925]
          Length = 281

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 147/282 (52%), Gaps = 13/282 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           + K I+  Y     K +GQNFL D  +L  I + S   +   VIEIG G G LT+ LL  
Sbjct: 5   TTKEIVQKYNFKFTKSLGQNFLTDQTVLDDIVDGSEVCEEDFVIEIGPGVGTLTKELLK- 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A+KV  +E D    PIL++   +  N  ++I  DALK+DF++       ++++ANLPY 
Sbjct: 64  KAKKVCAVELDSNLIPILQEELKEFDN-FQLIHKDALKIDFKELIGDEKSVKVVANLPYY 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + T ++   +        ++SLT++ QKEV ERI +Q N   YG LS+L  +     ++ 
Sbjct: 123 VTTPIIARLLKE---GYKFKSLTIMIQKEVAERIASQPNCKEYGALSILVQYYCDTRIIR 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG- 245
            + P  F P PKV S +I               E   KI +++F  RRKTLR ++K LG 
Sbjct: 180 KVPPTCFIPQPKVDSIIIRLDRLNELRVKVKDEELFFKIVRQSFNMRRKTLRNAIKSLGF 239

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
                 E + + A I+   R E L++E+F ++ + + + +++
Sbjct: 240 VSSDNIEKVFNDADIDPRRRGETLTLEEFGKLADSVYNIREV 281


>gi|313902246|ref|ZP_07835652.1| dimethyladenosine transferase [Thermaerobacter subterraneus DSM
           13965]
 gi|313467476|gb|EFR62984.1| dimethyladenosine transferase [Thermaerobacter subterraneus DSM
           13965]
          Length = 320

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 136/282 (48%), Gaps = 17/282 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              L+  L  Y + P + +GQNFL+D N  ++I  +        VIE+G G G LT+ L 
Sbjct: 22  RSELRRWLERYGVRPSRRLGQNFLVDDNWAERIVAAVEPGPDDLVIEVGPGLGALTERLA 81

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRII 122
              A +V  +E D++    L++     PN LE+++ D L VD ++          P+++ 
Sbjct: 82  QR-AGRVRAVEVDRRLAAALRERLGHLPN-LELVEGDILAVDLDRLASRQDPAGGPVKLA 139

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           +NLPY I +  L  W+ A   P  WE   L  Q EV +R+ A   S  YG L+V   +  
Sbjct: 140 SNLPYAITSPFLVRWLEA---PIRWERAVLTLQAEVVDRLVAAPGSAAYGALTVFVAYHA 196

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +   +  +    F+P P+V S V+   PHL P       E+L  + + AF +RRK L  +
Sbjct: 197 RVERLGTVPAGAFWPRPEVDSAVVRLWPHLRPPVAVADPEALFALVRAAFSQRRKRLANA 256

Query: 241 LK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L       R+  E     AGI+   R EN+ +E F R+ N L
Sbjct: 257 LAAHPAVERVQAEAACRAAGIDPGARPENVDLEGFARLANQL 298


>gi|295089979|emb|CBK76086.1| dimethyladenosine transferase [Clostridium cf. saccharolyticum K10]
          Length = 310

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 148/289 (51%), Gaps = 19/289 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N   ++  I+  Y    +K  GQNFL+D+++L KI  ++G      V+EIG G G +T
Sbjct: 28  LGNPQKTI-QIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMT 86

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    A++V+ +E D    PIL +  + + N + +I  D LKVD +K    +N   PI
Sbjct: 87  QYLAES-AKQVVAVEIDTNLIPILSETLAVYDN-VTVINQDILKVDIKKLAEEYNGGRPI 144

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +++T++ QKEV +R+     S  YG LS+   
Sbjct: 145 KVVANLPYYITTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQ 201

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237
           +  +  ++ ++ P+ F P P V S VI    H  P       + + K+ + +F +RRKTL
Sbjct: 202 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRHKKPPVEVKNRDLMFKLIRASFNQRRKTL 261

Query: 238 RQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              L                + Q G+  ++R E L++E F R++++L +
Sbjct: 262 LNGLNNSPEIPIGKEKIAAAIEQLGVPASVRGEALTLEQFARLSDLLEE 310


>gi|288554650|ref|YP_003426585.1| dimethyladenosine transferase [Bacillus pseudofirmus OF4]
 gi|288545810|gb|ADC49693.1| dimethyladenosine transferase [Bacillus pseudofirmus OF4]
          Length = 302

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 138/285 (48%), Gaps = 19/285 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
            +  K IL  Y    KK +GQNFL+D N+L+ I +++   +    IEIG G G LT+ L 
Sbjct: 18  PNRTKEILKKYGFNFKKSLGQNFLIDTNVLRNIVDAANLDETSGAIEIGPGIGALTEQLA 77

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122
                +V+  E DQ+  P+LKD  S + N ++II  D LK D  +     F     + ++
Sbjct: 78  KR-VDQVVAFEIDQRLLPVLKDTLSPYDN-VQIIHSDVLKADINEAIKAHFKDGQDLMVV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +L   +           + ++ Q EV ERI A+  +  YG LS+   +  
Sbjct: 136 ANLPYYVTTPILMKLLELKLP---IRGIVVMIQAEVAERIAAKPGTKDYGSLSIAAQYYA 192

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240
           +A  +  +   VF P P+V S V+       P    ++     K+   +F  RRKT+  +
Sbjct: 193 EAEKVLTVPASVFVPQPRVDSAVLRLTIRQKPAVEVIDEQYFFKVFHASFANRRKTILNN 252

Query: 241 L--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L        ++   E  L +A I+   R E LSIE+F ++++ L 
Sbjct: 253 LVHNLASKSQKAEIEQALAEADIDPKRRGETLSIEEFAKLSDSLY 297


>gi|114564241|ref|YP_751755.1| dimethyladenosine transferase [Shewanella frigidimarina NCIMB 400]
 gi|122298930|sp|Q07YJ8|RSMA_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|114335534|gb|ABI72916.1| dimethyladenosine transferase [Shewanella frigidimarina NCIMB 400]
          Length = 268

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 141/281 (50%), Gaps = 15/281 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+NK H             +K  GQNFL D  ++  I  +    +   ++EIG G G LT
Sbjct: 1   MSNKVH--------LGHTARKRFGQNFLTDQGVISSIVGAIAPDNDHVMVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +  +    + V+E D+     L+       ++L I Q DAL+ DF +       +++ 
Sbjct: 53  EPVADM-IDNLTVVELDRDLVKRLQYH-PVLKDKLTIHQGDALQFDFGQLQQPGKKMKVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+      +    E++  + QKEV  R++A   +  YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFE---FAEQIETMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYYC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQS 240
           +   + ++ P  F P+PKV S VI  +P    P PC  ++ L+ +   AF  RRKTLR +
Sbjct: 168 QVVPVLEVPPTSFTPAPKVDSAVIRLLPFEVKPWPCKNVDVLRHLVTTAFNMRRKTLRNN 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           LK L  +    +  I+ +LR E +S+  +  + N+L D +D
Sbjct: 228 LKTLLSDEDFAELQIDASLRPEQISVPQYVAMANMLCDKKD 268


>gi|301024796|ref|ZP_07188434.1| dimethyladenosine transferase [Escherichia coli MS 196-1]
 gi|299880286|gb|EFI88497.1| dimethyladenosine transferase [Escherichia coli MS 196-1]
          Length = 273

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +      ++ VIE D+     L+        +L I Q DA+  +F +    +  P+R+
Sbjct: 53  EPVGERL-DQLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
                + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R 
Sbjct: 168 CNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           SL  L    +L    I+  +RAEN+S+  +C++ N L +N  +
Sbjct: 228 SLGNLFSVEVLTGMRIDPAMRAENISVAQYCQMANYLAENAPL 270


>gi|295115506|emb|CBL36353.1| dimethyladenosine transferase [butyrate-producing bacterium SM4/1]
          Length = 310

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 148/289 (51%), Gaps = 19/289 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N   ++  I+  Y    +K  GQNFL+D+++L KI  ++G      V+EIG G G +T
Sbjct: 28  LGNPQKTI-QIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMT 86

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    A++V+ +E D    PIL +  + + N + +I  D LKVD +K    +N   PI
Sbjct: 87  QYLAES-AKQVVAVEIDTNLIPILSETLAGYDN-VTVINQDILKVDIKKLAEEYNGGRPI 144

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +++T++ QKEV +R+     S  YG LS+   
Sbjct: 145 KVVANLPYYITTPIIMGLFESSVP---IDNITVMVQKEVADRMQVGPGSKDYGALSLAVQ 201

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237
           +  +  ++ ++ P+ F P P V S VI    H  P       + + K+ + +F +RRKTL
Sbjct: 202 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRHKKPPVEVKNRDLMFKLIRASFNQRRKTL 261

Query: 238 RQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              L                + Q G+  ++R E +++E F R++++L +
Sbjct: 262 LNGLNNSPEIPIGKEKIAAAIEQLGVPASVRGEAMTLEQFARLSDLLEE 310


>gi|24378846|ref|NP_720801.1| dimethyladenosine transferase [Streptococcus mutans UA159]
 gi|27151562|sp|P59156|RSMA_STRMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|24376723|gb|AAN58107.1|AE014882_10 dimethyladenosine transferase [Streptococcus mutans UA159]
          Length = 291

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 149/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K+ + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MKIADKTVT-RAILERHGFTFKKLFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++ +D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-IKVVNEDILKSDLQTRIKEFANPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ ++  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAQPSTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      +    + + AF  RR
Sbjct: 175 AVQYYMTAKIAFIVPRTVFVPAPNVDSAILKMTRREQPLVQVQDEDFFFCVGKAAFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E L+I DF R+ + L +
Sbjct: 235 KTLWNNLTSHFGKSEEVKVKLEQALEAADIKPSIRGEELTITDFARLADALRE 287


>gi|251788203|ref|YP_003002924.1| dimethyladenosine transferase [Dickeya zeae Ech1591]
 gi|247536824|gb|ACT05445.1| dimethyladenosine transferase [Dickeya zeae Ech1591]
          Length = 272

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 137/280 (48%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
             +         V+E D+     L ++     ++L IIQ DA+ VDF         P+R+
Sbjct: 53  IPVGER-IDSFTVVELDRDLAARL-EVHPTLRDKLTIIQQDAMTVDFAALSQQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S          +  + QKEV  R+ A  +S  YGRL+V+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFSYTQA---IRDMHFMLQKEVVNRLVAGPDSKAYGRLTVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH   P P      L +IT EAF +RRKTLR 
Sbjct: 168 CQVIPVLEVPPTAFKPAPKVDSAVVRLVPHTTSPYPTVDTRILSRITTEAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L     L    ++ N RAEN++I  +CR+   LT +
Sbjct: 228 SLGNLFTPEQLTALEVDQNARAENVTIAQYCRLAEWLTAH 267


>gi|152995082|ref|YP_001339917.1| dimethyladenosine transferase [Marinomonas sp. MWYL1]
 gi|189028811|sp|A6VU53|RSMA_MARMS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|150836006|gb|ABR69982.1| dimethyladenosine transferase [Marinomonas sp. MWYL1]
          Length = 266

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/260 (33%), Positives = 134/260 (51%), Gaps = 7/260 (2%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  ++++I    G   G  ++EIG G G LT+ ++++  R  + +E 
Sbjct: 7   HKARKRFGQNFLHDHGVIRRIVACIGPKKGQRIVEIGPGKGALTEGIISVTERMDV-VEL 65

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   PILK    + P  L + + DA+K DF         IR++ NLPYNI T L+F+ +
Sbjct: 66  DRDLIPILKVNLFRFPE-LTVHEADAMKFDFTSLTTPEQAIRVVGNLPYNISTPLIFHLL 124

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S        E +  + QKEV +R+ A+     YGRLSV+  +      +F + P  F P+
Sbjct: 125 SQAQA---IEDMHFMLQKEVVDRLAARPGDSLYGRLSVMAQYYCAVESLFIVGPESFDPA 181

Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S ++   PH         ++ L+ + +  F +RRKTLR + K +   +      I+
Sbjct: 182 PKVDSAIVRMTPHKILPHPVNNIKMLEDMVRIGFQQRRKTLRNNYKGVLDNDDFSALNID 241

Query: 257 TNLRAENLSIEDFCRITNIL 276
             LR E L +EDF RI N +
Sbjct: 242 PTLRPERLDVEDFVRIANYV 261


>gi|323690920|ref|ZP_08105212.1| ribosomal RNA small subunit methyltransferase A [Clostridium
           symbiosum WAL-14673]
 gi|323505045|gb|EGB20815.1| ribosomal RNA small subunit methyltransferase A [Clostridium
           symbiosum WAL-14673]
          Length = 292

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 145/288 (50%), Gaps = 19/288 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N  +++  I+  Y    +K  GQNFL+D ++L KI  ++G      V+EIG G G +T
Sbjct: 5   LGNPKNTI-EIIQKYNFAFQKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMT 63

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    A +V+ +E D    PIL++    + N + II +D LK+D  K    +N   PI
Sbjct: 64  QYLAE-NAGRVVAVEIDSNLIPILEETLKDYDN-ITIINEDILKLDINKLAQEYNGGRPI 121

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +++T++ QKEV +R+     +  YG LS+   
Sbjct: 122 KVVANLPYYITTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGTKDYGALSLAVQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237
           +  +  ++ ++ P+ F P P V S VI    H  P       E + K+ + +F +RRKTL
Sbjct: 179 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRHRTPPVEVDDRELMFKLIRASFNQRRKTL 238

Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
              L         +      +   G+  ++R E L+++ F  + N+L+
Sbjct: 239 LNGLNNSPEINISKEKIAEAIEALGVSASVRGEALTLKQFAELANLLS 286


>gi|168494774|ref|ZP_02718917.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06]
 gi|225855474|ref|YP_002736986.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA]
 gi|254807889|sp|C1CGR5|RSMA_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|183575340|gb|EDT95868.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06]
 gi|225722617|gb|ACO18470.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA]
          Length = 290

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLMPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|291537682|emb|CBL10794.1| dimethyladenosine transferase [Roseburia intestinalis M50/1]
 gi|291537815|emb|CBL10926.1| dimethyladenosine transferase [Roseburia intestinalis XB6B4]
          Length = 290

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/292 (32%), Positives = 149/292 (51%), Gaps = 19/292 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+    +++  +L  Y    +K  GQNFL+D ++L+KI E++G      V+EIG G G +
Sbjct: 3   TLGIPQNTI-AVLQKYHFNFQKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTM 61

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    AR+V  +E D    PIL+D  S + N + +I  D LK+D  K     N   P
Sbjct: 62  TQYLCE-NAREVTAVEIDTNLIPILEDTLSAYDN-VTVINQDILKLDIAKLAMERNGGKP 119

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +       +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 120 IKVVANLPYYITTPIIMGLFESHVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLAV 176

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236
            +  K  ++ ++ P+ F P P V S VI    H   P+    E L   I + +F +RRKT
Sbjct: 177 QFYAKPQIVANVPPNCFMPRPNVGSAVIRLTRHEEVPVQVDDEKLMFHIIRASFNQRRKT 236

Query: 237 LRQSLKR-----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           L   L       L  E +   + + G    +R E L++E F  ++NI+ + Q
Sbjct: 237 LANGLSNAPQVHLSKEEIQECIAELGEPLTIRGEALTLEQFAALSNIIGNRQ 288


>gi|167465157|ref|ZP_02330246.1| dimethyladenosine transferase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381202|ref|ZP_08055205.1| dimethyladenosine 16S ribosomal RNA transferase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154778|gb|EFX47049.1| dimethyladenosine 16S ribosomal RNA transferase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 301

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 99/297 (33%), Positives = 148/297 (49%), Gaps = 29/297 (9%)

Query: 3   MNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53
           MN+ SHS          K I+  +    KK +GQNFL+DLNIL++I  ++        +E
Sbjct: 1   MNSHSHSSRDVATPRKTKEIIQKHGFSFKKSLGQNFLMDLNILRQIVSAAELTSQKGALE 60

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF- 112
           IG G G LTQ L    A KV+ +E DQ+  PIL +    +P   E+I  D LK+D ++  
Sbjct: 61  IGPGIGALTQQLAKQ-AGKVVAVEIDQRLLPILSETLEGYPA--EVIHGDVLKMDLKELL 117

Query: 113 ---FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
              F   S + ++ANLPY + T ++   +         E++ ++ QKEV ER+ A   S 
Sbjct: 118 RDKFQQVSAVTVVANLPYYVTTPIIMKLLENKLP---LENIVVMIQKEVAERMAAVPGSK 174

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQ 227
            YG LS+   +  +A ++  +   VF P P V S VI       P           ++ Q
Sbjct: 175 DYGSLSIAVQYYCEARVISIVPRTVFVPQPNVDSAVIKLALRKEPPVRVSDEAFFFEVIQ 234

Query: 228 EAFGKRRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            +F +RRKT+  +L             E LL +AGI+ + R E LSIE+F R++ IL
Sbjct: 235 ASFAQRRKTIYNNLAARYCSKENKKEMEALLREAGIQPSRRGETLSIEEFARLSEIL 291


>gi|322387082|ref|ZP_08060693.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
 gi|321142069|gb|EFX37563.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
          Length = 290

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEVDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAKPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEIKDKLTKALDQAGLVPSVRGEALSLAEFASLADALK 286


>gi|197105173|ref|YP_002130550.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1]
 gi|226732606|sp|B4RBS4|RSMA_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|196478593|gb|ACG78121.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1]
          Length = 285

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 115/276 (41%), Positives = 163/276 (59%), Gaps = 7/276 (2%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            +L+  L  + +  KK  GQ+FLLDLNI +KIA  +   DG  VIE+G GPG LT+ LL 
Sbjct: 7   PTLREALEAHGLWAKKAFGQHFLLDLNITRKIARLAQVGDGDVVIEVGPGPGGLTRALLE 66

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GAR VI +EKD++F P+L++++   P+ L ++  DAL  D E   +   P  +++NLPY
Sbjct: 67  TGAR-VIAVEKDERFRPLLQEVADAAPH-LTLVFGDALTAD-EAALSAGRPAHLVSNLPY 123

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+GT LL  W++    P    SLTL+FQKEV +RITA      YGRL+V+      A  +
Sbjct: 124 NVGTPLLIKWLTGPWTP---ASLTLMFQKEVADRITAAPGEDAYGRLAVIAQATADARPV 180

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            D+    F P PKV S V+   P    P P  L++L+K+T  AFG+RRK LR SLK LGG
Sbjct: 181 MDVPARAFTPPPKVESAVVRLEPRAARPSPERLDALQKVTAAAFGQRRKMLRSSLKALGG 240

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           E L+  AG++   RAE + +  F  + +     ++ 
Sbjct: 241 EPLITAAGLDPAARAEVVPVAGFLALADAWLARREA 276


>gi|270158275|ref|ZP_06186932.1| dimethyladenosine transferase [Legionella longbeachae D-4968]
 gi|289163469|ref|YP_003453607.1| dimethyladenosine transferase (16S rRNA dimethylase) [Legionella
           longbeachae NSW150]
 gi|269990300|gb|EEZ96554.1| dimethyladenosine transferase [Legionella longbeachae D-4968]
 gi|288856642|emb|CBJ10453.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Legionella longbeachae NSW150]
          Length = 256

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 138/263 (52%), Gaps = 10/263 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K  P+K  GQNFL + +I+ +I  +        ++EIG G G LTQ LL      +  +E
Sbjct: 2   KHSPRKRFGQNFLQNQHIINRIVHAINPQPQDNMLEIGPGLGALTQSLL-RYLNHLTAVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L ++ S   ++L +I  DAL +D+ +F      +R++ NLPYNI T LL + 
Sbjct: 61  IDTDLQKYLTEL-SGIADKLHLIAADALTLDYNQF---GPNLRVVGNLPYNISTPLLIHL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    E +  + QKEV ER+ AQ     YGRL+V+  +      +FD+ P  F P
Sbjct: 117 LK---FTASIEDMHFMLQKEVVERMAAQPGCKAYGRLTVMLQYHCTVEHLFDVPPEAFDP 173

Query: 198 SPKVTSTVIHFIPHL-NPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S V+  +PH  +P     +E L+ +   AF  RRKTL  +LK L   + LH  GI
Sbjct: 174 KPKVDSAVVRLVPHRISPFEQIAVERLEYLVAHAFAMRRKTLNNNLKGLITADQLHDLGI 233

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           + + R E +SI ++ ++   +++
Sbjct: 234 DGSRRPEQISISEYVQLAKFISN 256


>gi|138893714|ref|YP_001124167.1| dimethyladenosine transferase [Geobacillus thermodenitrificans
           NG80-2]
 gi|166221668|sp|A4IJB8|RSMA_GEOTN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|134265227|gb|ABO65422.1| Dimethyladenosine transferase [Geobacillus thermodenitrificans
           NG80-2]
          Length = 293

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 20/282 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL+ Y    KK +GQNFL+D NIL+KI +++G       IEIG G G LT+ L    
Sbjct: 11  TKEILARYGFSFKKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A+KV+  E D +  PIL D  S + N + II  D LK D      + F   S   ++ANL
Sbjct: 70  AKKVVAFEIDSRLLPILADTLSAYDN-VRIIHQDVLKADLHAVIAEEFAEVSDRMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++          + ++ QKEV +R+ A+  +  YG L++   + T+A 
Sbjct: 129 PYYVTTPIIMKLLTERLP---IRGMVVMMQKEVADRLAAKPGTKDYGSLTIAVQYYTEAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSL-- 241
           ++  +   VF P P V S VI      +P       E   ++ + +F +RRKTL  +L  
Sbjct: 186 VVMTVPRTVFMPQPNVDSAVIRLTKRSHPPVAVEDEEVFFQVVRASFAQRRKTLLNNLLN 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                  K+   E  L   GI+   R E L + +F  ++N L
Sbjct: 246 NLPDGKEKKEQIERALDAVGIDPRRRGETLDMAEFASLSNAL 287


>gi|90409115|ref|ZP_01217237.1| KsgA [Psychromonas sp. CNPT3]
 gi|90309789|gb|EAS37952.1| KsgA [Psychromonas sp. CNPT3]
          Length = 272

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 138/283 (48%), Gaps = 15/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNNK+H             +K  GQNFL D  I+  I  +        ++EIG G G LT
Sbjct: 1   MNNKTH--------LGHTARKRFGQNFLHDDYIIDSIVAAISPQYDDNIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +     + + VIE D+     L         +L I Q DAL+ DF    +    +R+ 
Sbjct: 53  EPVAEH-VKTLHVIELDRDLADRLAKH-PTLSKKLNITQADALQFDFSLLASKEKQLRVF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+           + +  + QKEV  R+ A  N   YGRL+V+  +  
Sbjct: 111 GNLPYNISTPLMFHLFEYADK---IKDMHFMLQKEVVNRLCAGPNCKAYGRLTVMAQYYC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           K   + ++ P  F P+PKV S V+   P+  P      L++L ++   AF +RRKT+R  
Sbjct: 168 KIIPVLEVPPSAFIPAPKVDSAVVRLEPYDVPPFVAKSLKALNQVCSMAFNQRRKTIRNG 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           L+ L     L    ++   RAEN+S+E++ R+ N +TD ++ A
Sbjct: 228 LRELLSVEELQLLNVDHTKRAENVSVEEYVRLANYVTDRKEKA 270


>gi|291521141|emb|CBK79434.1| dimethyladenosine transferase [Coprococcus catus GD/7]
          Length = 287

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 147/289 (50%), Gaps = 19/289 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           ++N   ++  ++  Y+   +K  GQNFL+D ++L KI   +G      V+EIG G G +T
Sbjct: 4   LSNPQRTI-EVIKKYEFCFQKKFGQNFLIDGHVLDKIIAGAGVTKDDMVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    A KV+ +E D+   PIL++  + + N +++I  D L +D EK     N   PI
Sbjct: 63  QYLAE-AAGKVVAVEIDRNLLPILQETLADYDN-VKVIHADVLSLDLEKLVQEENGGRPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++              ++T++ QKEV  R+ +   S  YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMALFEQHVP---LANVTVMVQKEVAARMKSGPGSKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           +  +  ++ ++  + F P P V S VI    +  P       + L KI + +F +RRKTL
Sbjct: 178 YYAEPYIVANVPCNCFMPRPNVDSAVIRLTRYEEPPVQVKDEKMLFKIIRASFNQRRKTL 237

Query: 238 RQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +         +  +      + +AG   ++R E L++E F ++T+IL +
Sbjct: 238 QNGLNNSSELNFTKDQIAAAIAEAGFSPSVRGEALTLEQFAKLTDILLN 286


>gi|168487122|ref|ZP_02711630.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00]
 gi|183569963|gb|EDT90491.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00]
          Length = 290

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFIHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|315127732|ref|YP_004069735.1| dimethyladenosine transferase [Pseudoalteromonas sp. SM9913]
 gi|315016246|gb|ADT69584.1| dimethyladenosine transferase [Pseudoalteromonas sp. SM9913]
          Length = 268

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/267 (34%), Positives = 136/267 (50%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D +I+ KI  +        ++EIG G G +T+ +  L    + V
Sbjct: 6   HLGHRARKRFGQNFLFDESIIDKIVTAIDPKPQDNLVEIGPGLGAITEPVADLSGH-LTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L +     P +L + Q DA+K DF         +++  NLPYNI T LLF
Sbjct: 65  VELDKDLAQRLIEHPFLGP-KLTVNQGDAMKFDFASLVKDDKKLKVFGNLPYNISTPLLF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E +  + QKEV +R+ A   S  +GRLSV+T +   A  + ++ P  F
Sbjct: 124 HLFE---FADHIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCHAMPVVEVPPECF 180

Query: 196 FPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S VI  IP          ++ L  +  EAF +RRKTLR SL  L   + L   
Sbjct: 181 KPAPKVDSAVIRLIPKKAQQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTADELTSI 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+  LRAE+LS++ F  I N + DN+
Sbjct: 241 GIDITLRAESLSLQQFIDIANWIYDNK 267


>gi|121534378|ref|ZP_01666202.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1]
 gi|121307148|gb|EAX48066.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1]
          Length = 283

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 135/275 (49%), Gaps = 13/275 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  + I   K +GQNFL+D  ++  I  ++    G  V+EIG G G LTQ L   GA  
Sbjct: 15  ILKTFGIQMSKKLGQNFLVDEQVVDGIVAAAAVKPGEAVLEIGPGIGTLTQGLAEAGAN- 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  +E D+Q   +L    + + N + II  D L++D  +    +   ++IANLPY I T 
Sbjct: 74  VTAVELDRQLLDVLAKTLAGYDN-VRIIHGDILRIDISREIR-AEKFKVIANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++   +         E +  + QKEV ER+ A   S  YG LSV   + T+  +MF + P
Sbjct: 132 IIMRLLEERLP---VELMVTMVQKEVAERMVAAPGSKDYGALSVAVQFYTQPEIMFVVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245
             F P+P V S VI       P       ++  ++ + AF +RRKTL  +LK  G     
Sbjct: 189 QAFIPAPAVESAVIRCRVRSAPPVSVTDEKAFFRVVKAAFAQRRKTLANALKGGGIAQEV 248

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            + +L Q GI+   R E L++ +F  + N  T  Q
Sbjct: 249 VDAMLRQTGIDGGRRGETLTLAEFAALANAWTSRQ 283


>gi|315635079|ref|ZP_07890359.1| dimethyladenosine transferase [Aggregatibacter segnis ATCC 33393]
 gi|315476200|gb|EFU66952.1| dimethyladenosine transferase [Aggregatibacter segnis ATCC 33393]
          Length = 287

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 137/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D N+++ I  +        ++EIG G G LT+ +       + 
Sbjct: 5   KHLGHTARKRFGQNFLHDNNVIQNIVAAIYPQANQFLVEIGPGLGALTEPVAEQ-VEHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VLELDRDLAERLRHHPFLHQ-KLNVIETDAMQFDFSSLYEQEHLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYH---HIIQDMHFMLQKEVVKRLCASPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHTTLPHPVKDLYWLNRVCSQAFNQRRKTLRNALSGLFL 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L    I+ N RAENLSI D+ R+ N L DN
Sbjct: 240 PENLTALNIDLNARAENLSIADYARLANWLADN 272


>gi|149007460|ref|ZP_01831103.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74]
 gi|147761032|gb|EDK68001.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74]
 gi|332071962|gb|EGI82450.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17545]
          Length = 290

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QA +  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQADLSPSVRGEALSLAEFAGLADALK 286


>gi|145638541|ref|ZP_01794150.1| dimethyladenosine transferase [Haemophilus influenzae PittII]
 gi|145272136|gb|EDK12044.1| dimethyladenosine transferase [Haemophilus influenzae PittII]
          Length = 287

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 138/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFDELYTTENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENL+I D+  + N L DN
Sbjct: 240 PENLTALGIDLNARAENLAIADYAHLANWLADN 272


>gi|154482621|ref|ZP_02025069.1| hypothetical protein EUBVEN_00288 [Eubacterium ventriosum ATCC
           27560]
 gi|149736521|gb|EDM52407.1| hypothetical protein EUBVEN_00288 [Eubacterium ventriosum ATCC
           27560]
          Length = 288

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 143/291 (49%), Gaps = 18/291 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       + K I++ Y    +K  GQNFL+D N+L+ I   +       V+EIG G G 
Sbjct: 1   MAYLGTPSATKEIINKYSFAFQKKFGQNFLIDSNVLESIIRGAEITKDDFVLEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           +TQ L    AR+V+ +E D+   PIL+D  S++ N +E+I  D LKVD +      N   
Sbjct: 61  MTQYLCE-AARQVVAVEIDKMLIPILEDTLSEYDN-VEVINQDVLKVDIKSLAEEKNNGK 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T ++     +       +S+T++ QKEV +R+     S  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPIIMGLFESGVP---IDSITIMVQKEVADRMQTGPGSKDYGALSLA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             +   A ++ ++S   F P P V S VI    H  P       + + KI + +F +RRK
Sbjct: 176 VQYYATAKVILNVSATCFMPRPNVDSAVIKLTRHKEPTVNVADEKLMFKIIRASFNQRRK 235

Query: 236 TLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           TL   LK               + + G    +R E L++E+F  + N  T+
Sbjct: 236 TLVNGLKNSPELSFSKEQIVKAIEKIGKPETIRGEALTLEEFAELANAFTE 286


>gi|307128183|ref|YP_003880214.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B]
 gi|306485245|gb|ADM92114.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B]
          Length = 290

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N  
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|301155574|emb|CBW15042.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus parainfluenzae T3T1]
          Length = 287

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/273 (34%), Positives = 139/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGELYTKENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAGPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI  N RAENL+I D+ R+ N LTDN
Sbjct: 240 PENLTALGIGLNARAENLAIADYARLANWLTDN 272


>gi|150014951|ref|YP_001307205.1| dimethyladenosine transferase [Clostridium beijerinckii NCIMB 8052]
 gi|149901416|gb|ABR32249.1| dimethyladenosine transferase [Clostridium beijerinckii NCIMB 8052]
          Length = 281

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 12/283 (4%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+ K    + ++  Y     K +GQNFL+D ++L  I   +   +   +IEIG G G LT
Sbjct: 1   MDLKDIKTQELVKKYNFKFSKSLGQNFLVDDSVLDDIVNGAEVNNEDFIIEIGPGVGTLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             LL   A+KV  IE D    PIL+    +H N   +I  DALKVDF +       ++++
Sbjct: 61  AQLLM-KAKKVTSIELDNDLIPILEQELGEHKN-FSLIHKDALKVDFNELIGDEKSVKLV 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   +        ++SLT++ QKEV ERI A+ N   YG LSVL  +  
Sbjct: 119 ANLPYYVTTPIIVKLLKG---GYNFKSLTIMIQKEVAERINAEPNCKEYGALSVLVQYYC 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240
              ++  + P  F P PKV S VI       P      +  + +I +  F  RRKTL  +
Sbjct: 176 NTDIIRKVPPTCFIPRPKVESIVIRLDRLDEPRVKTKDINIMFEIVRAGFNMRRKTLWNA 235

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            K L       E    ++GI+   RAE L++E+F  +++ + D
Sbjct: 236 AKTLKVDKEKLEEAFKKSGIDPKRRAETLTLEEFAALSDCIYD 278


>gi|210617032|ref|ZP_03291367.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787]
 gi|210149555|gb|EEA80564.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787]
          Length = 290

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/291 (30%), Positives = 147/291 (50%), Gaps = 19/291 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  IL  Y    +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 5   TLGNPQNTI-EILQKYDFSFQKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSP 118
           TQ L    AR+V+ +E D+   PIL+D    + N + +I DD LKVD  K    +N + P
Sbjct: 64  TQYLAC-AARQVVAVEIDKALIPILEDTLQAYDN-VTVINDDVLKVDIPKLAKEYNDNKP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +       ES+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---IESITVMVQKEVADRMQVGPGTKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236
            +  +  ++ ++ P+ F P PKV S VI    H  P       + + +I + +F +RRKT
Sbjct: 179 QYYAEPYIVANVPPNCFMPRPKVGSAVIRLTRHKEPPVQVENEKLMFQIIRASFNQRRKT 238

Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L   L                +   G   ++R E L++++F  +++ +   
Sbjct: 239 LANGLNNSPEIHLPKEVITTAIESLGKGPSVRGEALTLQEFAVLSDRINQQ 289


>gi|288906214|ref|YP_003431436.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34]
 gi|325979187|ref|YP_004288903.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732940|emb|CBI14519.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34]
 gi|325179115|emb|CBZ49159.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 290

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N +++I +D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLHDFDN-VKVINEDILKSDLQSRIKEFANPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI +F ++ + L +
Sbjct: 235 KTLWNNLTSHFGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287


>gi|225374814|ref|ZP_03752035.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM
           16841]
 gi|225213383|gb|EEG95737.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM
           16841]
          Length = 288

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 148/288 (51%), Gaps = 19/288 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+    +++  +L  Y    +K  GQNFL+D ++L+KI E SG      V+EIG G G +
Sbjct: 3   TLGIPQNTI-EVLQKYNFNFQKKFGQNFLIDTHVLEKIIEESGITKDDFVLEIGPGIGTM 61

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    AR+V  +E D+   PIL D  S + N +E+I DD LKVD  K     N   P
Sbjct: 62  TQYLCE-NAREVAAVEIDKNLIPILADTLSAYDN-VEVINDDILKVDINKLAEEKNGGKP 119

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     +       +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 120 IKVVANLPYYITTPIIMGLFESHVP---IDSITIMVQKEVADRMQVGPGTKEYGALSLAV 176

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236
            +  K  ++  + P+ F P P V S VI    H   P+    E L  KI + +F +RRKT
Sbjct: 177 QYYAKPEIVAIVPPNCFMPRPNVGSAVIRLTRHKEVPVQVNDEKLMFKIIRASFNQRRKT 236

Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L   L             +  + + G+   +R E L+++ F +++NI+
Sbjct: 237 LANGLNNAPDIHLSKEVIQESIEELGVPVTIRGEALTLQQFAQLSNII 284


>gi|169834364|ref|YP_001695338.1| dimethyladenosine transferase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|194397125|ref|YP_002038567.1| dimethyladenosine transferase [Streptococcus pneumoniae G54]
 gi|237651002|ref|ZP_04525254.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI 1974]
 gi|237822560|ref|ZP_04598405.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI
           1974M2]
 gi|226732629|sp|B5E2H6|RSMA_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732630|sp|B1I8T7|RSMA_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|168996866|gb|ACA37478.1| dimethyladenosine transferase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|194356792|gb|ACF55240.1| dimethyladenosine transferase [Streptococcus pneumoniae G54]
          Length = 290

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|166031341|ref|ZP_02234170.1| hypothetical protein DORFOR_01028 [Dorea formicigenerans ATCC
           27755]
 gi|166028746|gb|EDR47503.1| hypothetical protein DORFOR_01028 [Dorea formicigenerans ATCC
           27755]
          Length = 292

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 92/292 (31%), Positives = 148/292 (50%), Gaps = 19/292 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  IL  Y    +K  GQNFL+D ++L+KI  ++G      V+EIG G G +
Sbjct: 5   TLGNPQNTI-EILQKYHFNFQKKFGQNFLIDTHVLEKIISAAGITKDDMVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    A KV  +E D+   PIL+D  S++ N + +I DD LKVD        N   P
Sbjct: 64  TQYLAE-AAGKVAAVEIDKNLIPILEDTLSEYDNVM-VINDDVLKVDIRGLVEKENGGRP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPY I T ++      +      ES+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 VKVVANLPYYITTPIIMGLFEGNVP---VESITVMVQKEVADRMQTGPGNKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKT 236
            +     ++ ++ P+ F P PKV S VI    H  P       + +  I + +F +RRKT
Sbjct: 179 QYYADPYIVANVPPNCFMPRPKVGSAVIRLTRHAAPPVKVDNEKWMFDIIRASFNQRRKT 238

Query: 237 LRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           L   L                + + G   ++R E+LS+E+F  ++N L + +
Sbjct: 239 LANGLSNSDKIDLPKDVITEAIAKLGKGESVRGESLSLEEFAALSNDLWEKK 290


>gi|125718907|ref|YP_001036040.1| dimethyladenosine transferase [Streptococcus sanguinis SK36]
 gi|166221709|sp|A3CQN5|RSMA_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|125498824|gb|ABN45490.1| Dimethyladenosine transferase, putative [Streptococcus sanguinis
           SK36]
          Length = 290

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 92/293 (31%), Positives = 147/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKV+      +F N  
Sbjct: 60  LTEFLAESAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVNLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRKVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L +A +  ++R E LS+E+F  + + L  
Sbjct: 235 KTLWNNLTSYFGKSEETKGKLTAALERAELSPSVRGEALSLEEFACLADALKS 287


>gi|162149099|ref|YP_001603560.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545158|ref|YP_002277387.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161787676|emb|CAP57272.1| putative dimethyladenosine transferase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532835|gb|ACI52772.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 275

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 108/273 (39%), Positives = 160/273 (58%), Gaps = 6/273 (2%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L+ +++ + +  +K +GQ+FLLD  I  +IA  +G L G  V+E+G GPG LT+ LL  
Sbjct: 4   PLRDVIARHGLDARKALGQHFLLDPGITARIAALAGDLTGRHVVEVGPGPGGLTRALLDS 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A  V  +E D +   I+ ++++  P RL +++ DA + D  +     +P +++ANLPYN
Sbjct: 64  PAETVTAVEVDARAVAIIAELATLFPGRLHLVEADATRQDLTRL--CPAPRQVVANLPYN 121

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           +GT LL  W+   +    WE LTL+FQ EV ERI A  +S  YGRL+VL  W  +  ++ 
Sbjct: 122 VGTPLLVGWLRQASA---WERLTLMFQMEVAERICAAPDSAQYGRLAVLAQWTCRCALVM 178

Query: 189 DISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            I P  F P PKV S V+  IPH   P P    +++++T  AFG+RRK LR SL+ +GGE
Sbjct: 179 RIPPGAFSPPPKVYSAVVSLIPHATQPDPALFRAMEQVTAAAFGQRRKMLRGSLRPIGGE 238

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            LL  AGI+   RAE L I +F  +     + Q
Sbjct: 239 ALLAAAGIDGARRAETLDIAEFDLLARCHAERQ 271


>gi|187933536|ref|YP_001884370.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund
           17B]
 gi|187721689|gb|ACD22910.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund
           17B]
          Length = 283

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 94/276 (34%), Positives = 140/276 (50%), Gaps = 12/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K ++  Y     K +GQNFLLD ++L  I + +   +   +IEIG G G LT  LL   
Sbjct: 8   TKELVKKYNFRFSKSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLL-QK 66

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+ V  IE D    PIL+    ++ ++ E+I +DALKVDF +       ++++ANLPY +
Sbjct: 67  AKMVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYV 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   +  +     +ESLT++ QKEV ERI A+ N   YG LSVL  +     ++  
Sbjct: 126 TTPIIVKLLKEN---HKFESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRK 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS-----LK 242
           +SP  F P PKV S VI      NP       + L  I +  F  RRKTL  +     L 
Sbjct: 183 VSPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLS 242

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +   +       I+   RAE LSIE+F  + + + +
Sbjct: 243 KEDLQKAFDSCNIDPKRRAETLSIEEFAALADSIHN 278


>gi|299536734|ref|ZP_07050044.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZC1]
 gi|298727848|gb|EFI68413.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZC1]
          Length = 293

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 138/282 (48%), Gaps = 20/282 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL  Y    KK +GQNFL+D NIL+ I   +   +    IE+G G G LT+ L    
Sbjct: 11  TQEILKKYGFSFKKSLGQNFLIDPNILRNIVSHANLTENSGAIEVGPGIGALTEHLA-RS 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANL 125
           A+KV+  E DQ+  P+L+D  S + N + II  D LK D EK      P    I ++ANL
Sbjct: 70  AKKVVSFEIDQRLLPVLEDTLSPY-NNVSIIHSDILKADVEKVIADEMPGIDDIMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T +L   ++            ++ QKEV +RITA+  +  YG LS+   +  KA 
Sbjct: 129 PYYVTTPILLKLLNDRLP---IRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVKAD 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243
           +   +   VF P P V S VI  I H  P       + L  +T+ +F +RRKT+  +L+ 
Sbjct: 186 IAMTVPKTVFMPQPNVDSAVIRLIKHEEPPVKVIDEDFLFVVTRASFVQRRKTIYNNLQS 245

Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
                          L  A IE   R E LSI++F ++ + L
Sbjct: 246 GLPNGKAQKDHILQALELANIEPTRRGETLSIQEFGKLADAL 287


>gi|297582384|ref|YP_003698164.1| dimethyladenosine transferase [Bacillus selenitireducens MLS10]
 gi|297140841|gb|ADH97598.1| dimethyladenosine transferase [Bacillus selenitireducens MLS10]
          Length = 298

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 140/288 (48%), Gaps = 19/288 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  Y    KK +GQNFL++ N+L+KI E++       VIEIG G G LT+   
Sbjct: 9   PTRTKAILERYGFSFKKSLGQNFLIEPNVLRKIVETAELSPDSGVIEIGPGIGALTEQSA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122
            + ARKV+  E DQ+  PIL D  S +P+ +EI   D LK D      + F     + ++
Sbjct: 69  KM-ARKVLAYEIDQRLLPILADTLSLYPH-VEIRHGDVLKADVHADVREVFEADQDLAVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   +           + ++ QKEV ERI A   S +YG LS+   +  
Sbjct: 127 ANLPYYVTTPIMMKLLEEKLP---VRVMVMMMQKEVAERIAADPGSKNYGSLSIAVQYYA 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240
           +A +MF +   VF P P V S ++       P    L+      + Q AF +RRKTL  +
Sbjct: 184 EAKLMFTVPKTVFVPQPNVDSAILRLTRRSEPPVDVLDEGFFFDVIQGAFTQRRKTLLNN 243

Query: 241 LKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           L     ++L        L    I+   RAE +S+ +F RI++     +
Sbjct: 244 LSVFFKDSLSKPEVQAALEALEIDPKRRAETVSMAEFARISDAFLARK 291


>gi|301169266|emb|CBW28863.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae 10810]
          Length = 287

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL + ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHNTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGELYTKENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|229917418|ref|YP_002886064.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b]
 gi|229468847|gb|ACQ70619.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b]
          Length = 292

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 94/291 (32%), Positives = 149/291 (51%), Gaps = 20/291 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M         K IL  +    KK +GQNFL+DLNIL KI  ++   +   V+EIG G G+
Sbjct: 1   MKDIATIQRTKAILERHGFSFKKSLGQNFLIDLNILSKIVGAAELSEVSGVLEIGPGIGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116
           LT+      A+KV+ +E DQ+  PIL D  S +P+ +++I  DAL++D  +         
Sbjct: 61  LTEQSAKR-AKKVVALEIDQRLLPILDDTMSPYPH-VKVIHGDALELDLREIVEQEFLNE 118

Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
               I ++ANLPY + T ++   + +      + SL ++ QKEV ERI A+  +  YG L
Sbjct: 119 GIEDISVVANLPYYVTTPIIMRLLESGVK---FRSLVMMIQKEVAERIGAKPGTKAYGSL 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGK 232
           S+   +  +A + F +  +VF P+P V S VI       P            + + +F +
Sbjct: 176 SIAIQYYAEAEVSFIVPKNVFIPAPNVDSAVITLRMRKEPAVQVKDEAFFFDVARASFAQ 235

Query: 233 RRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           RRKT+  +L    G+         LH+AGI+   R E LS+E+F R+++ +
Sbjct: 236 RRKTILNNLTNYIGKEHKVELERSLHEAGIDPKRRGETLSLEEFARLSDTI 286


>gi|168484284|ref|ZP_02709236.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00]
 gi|172042507|gb|EDT50553.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00]
 gi|332199410|gb|EGJ13487.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47368]
          Length = 290

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             I+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LSIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|294084204|ref|YP_003550962.1| dimethyladenosine transferase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663777|gb|ADE38878.1| dimethyladenosine transferase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 295

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 123/275 (44%), Positives = 169/275 (61%), Gaps = 7/275 (2%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           +  +   SL+ ++    +  +K +GQNFL DLN+ ++IA S+  L G T IEIG GPG L
Sbjct: 20  SEIDNLPSLRDLVGAMDMRARKSLGQNFLFDLNLTRRIARSAAPLTGTT-IEIGPGPGGL 78

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           T+ LL  GA KV+ IEKD +   +L  + S    RLE+ + DA+           +P RI
Sbjct: 79  TRALLLEGATKVLAIEKDWRAPDVLASLLSASRGRLELTEADAMDFPIWDI--EPAPRRI 136

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           IANLPYNI T LL  W+        +ES+TL+FQ+EV  RITA+     YGRLSVL GW 
Sbjct: 137 IANLPYNIATTLLIRWLEHAA---DFESMTLMFQREVALRITAKPGDSAYGRLSVLAGWL 193

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQS 240
             A ++FDI P  F P+PK+TS+V+  IP   P  PC  + L+ +T+ AFG+RRK LR S
Sbjct: 194 ADAEILFDIPPEAFVPAPKITSSVVQIIPLAAPRFPCRQQYLEDVTRHAFGQRRKMLRSS 253

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LK++GGE LL  AGI+   R ++L IE FC++  +
Sbjct: 254 LKKIGGEALLLAAGIDPETRPQDLDIESFCKLAEL 288


>gi|225571219|ref|ZP_03780217.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM
           15053]
 gi|225160050|gb|EEG72669.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM
           15053]
          Length = 291

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 145/289 (50%), Gaps = 19/289 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  IL  Y    +K  GQNFL+D ++L KI  ++       V+EIG G G +
Sbjct: 5   TLGNPQNTI-EILQKYDFSFQKKFGQNFLIDTHVLDKIIRAADITKEDMVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    A KV+ +E D+   PIL D    + N + +I +D LK+D  +     N   P
Sbjct: 64  TQYLAE-AAGKVVAVEIDKNLIPILTDTLHDYDN-VTVINEDVLKLDVRELAREENGGRP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPY I T ++      D      ES+T++ QKEV +R+     +  YG LS+  
Sbjct: 122 LKVVANLPYYITTPIIMGLFENDVP---VESITVMVQKEVADRMQTGPGNKDYGALSLAV 178

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKT 236
            +  +  ++ ++ P+ F P P+V S VI    H  P       + +  I + +F +RRKT
Sbjct: 179 QYYAEPYIVANVPPNCFMPRPRVGSAVIRLTRHEKPPVEVKDEKLMFDIIRASFNQRRKT 238

Query: 237 LRQSLKR-----LGGENLLHQ---AGIETNLRAENLSIEDFCRITNILT 277
           L   L       L  E L+      G    +R E+L++E+F  ++N + 
Sbjct: 239 LANGLNNSDKLSLAKEELIEAIERLGKGPGVRGESLTLEEFAELSNYIY 287


>gi|228476972|ref|ZP_04061610.1| dimethyladenosine transferase [Streptococcus salivarius SK126]
 gi|228250991|gb|EEK10162.1| dimethyladenosine transferase [Streptococcus salivarius SK126]
          Length = 290

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 98/293 (33%), Positives = 151/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116
           LT+ L    A +V+  E D +  PIL+D    H N + +I +D LK D +    +F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILEDTLRDHDN-VNVINEDVLKADLQTRVKEFKNPE 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A+ NS  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNSKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      + L ++ + +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQPLVEVKDEDFLFRVAKASFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI DF  +++ L +
Sbjct: 235 KTLWNNLTNHFGKSEEVKAKLEQALEIADIKPSIRGEALSISDFAHLSDALRE 287


>gi|319775528|ref|YP_004138016.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae F3047]
 gi|329122429|ref|ZP_08251016.1| dimethyladenosine transferase [Haemophilus aegyptius ATCC 11116]
 gi|317450119|emb|CBY86333.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae F3047]
 gi|327473711|gb|EGF19130.1| dimethyladenosine transferase [Haemophilus aegyptius ATCC 11116]
          Length = 287

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL + ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHNTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFGALYTKENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENL+I D+ R+ N L DN
Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADN 272


>gi|55821771|ref|YP_140213.1| dimethyladenosine transferase [Streptococcus thermophilus LMG
           18311]
 gi|62900469|sp|Q5M2L6|RSMA_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|55737756|gb|AAV61398.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus
           thermophilus LMG 18311]
          Length = 290

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 96/293 (32%), Positives = 153/293 (52%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116
           LT+ L    A +V+  E D++  PIL+D    H N +++I +D LK D +    +F N  
Sbjct: 60  LTEFLAE-NASEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +     M F +   VF P+P V S ++       P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTTKMAFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L  A I+ ++R E LSI DF R+++ L +
Sbjct: 235 KTLWNNLTSHFGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287


>gi|85058402|ref|YP_454104.1| dimethyladenosine transferase [Sodalis glossinidius str.
           'morsitans']
 gi|119365845|sp|Q2NVX6|RSMA_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|84778922|dbj|BAE73699.1| dimethyladenosine transferase [Sodalis glossinidius str.
           'morsitans']
          Length = 272

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 97/280 (34%), Positives = 142/280 (50%), Gaps = 16/280 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D +I+  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLHDSSIIDAIVAAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      ++ VIE D+     L        ++L I+Q DA+ VDF         P+R+
Sbjct: 53  EPVAER-VDEMTVIELDRDLAARLASH-PFLQSKLNIVQKDAMTVDFAALSAERGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+    N   YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTHAIRDMHFMLQKEVVNRLVDGPNGKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +P+   P P   L  L  +T  AF +RRKTLR 
Sbjct: 168 CQIIPVLEVPPASFRPAPKVDSAVVRLVPYATLPFPVKDLSKLATLTSLAFNQRRKTLRN 227

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL  L     L + GI+  LRAEN+S+E +CR+ N+L + 
Sbjct: 228 SLGNLFSAQQLAEQGIDATLRAENVSVELYCRLANVLAER 267


>gi|309750045|gb|ADO80029.1| S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase
           [Haemophilus influenzae R2866]
          Length = 287

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 13/276 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VDHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFDELYTTENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQ-EAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH   P P        +   +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHKELPHPVKDLYWLNLVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
              L   GI+ N RAENL+I D+ R+ N L DN   
Sbjct: 240 PENLTALGIDLNARAENLAIADYARLANWLADNSPA 275


>gi|242371677|ref|ZP_04817251.1| dimethyladenosine transferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242350626|gb|EES42227.1| dimethyladenosine transferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 296

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 146/283 (51%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+ KI E+S   +   +IE+G G G+LT+ L 
Sbjct: 9   PSRTRALLDQYGFNFKKSLGQNFLVDVNIINKIIEASQIDETTGIIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122
              A+KV+  E DQ+  P+L D  S + N + II +D LK D  K    + +    I ++
Sbjct: 69  KH-AKKVMSFEIDQRLIPVLNDTLSPYDN-VTIINEDILKADIGKAVNTYLDDCDKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A   +  YG LS++  + T
Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNASVGTKAYGSLSIVAQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQREEPLVDIDDEEAFFKLAKAAFAQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +         N L  AGI+   R E L+I+DF ++  
Sbjct: 244 YQNFFKDGKQYKSSILNWLENAGIDPKRRGETLTIQDFAKLYE 286


>gi|306832261|ref|ZP_07465415.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425700|gb|EFM28818.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 290

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N +++I +D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI +F ++ + L +
Sbjct: 235 KTLWNNLTSHFGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287


>gi|326794309|ref|YP_004312129.1| ribosomal RNA small subunit methyltransferase A [Marinomonas
           mediterranea MMB-1]
 gi|326545073|gb|ADZ90293.1| Ribosomal RNA small subunit methyltransferase A [Marinomonas
           mediterranea MMB-1]
          Length = 266

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 135/268 (50%), Gaps = 8/268 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
                  +K  GQNFL D+ I+++I       +G  V+EIG G G LT+ ++    + + 
Sbjct: 3   KAQPHKARKRFGQNFLHDMGIIRRIVACIAPKEGQRVVEIGPGKGALTEGII-SATKSMD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PILK    ++P+ L + + DA+K DF +     + IR++ NLPYNI T L+
Sbjct: 62  VVELDRDLIPILKVNLFKYPD-LRVHEADAMKFDFRQLATEGN-IRVVGNLPYNISTPLI 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +         + +  + QKEV +R+ A+     YGRLSV+  +      +F + P  
Sbjct: 120 FHLLEQAD---VIDDMHFMLQKEVVDRLAARPGDSLYGRLSVMAQYFCSVESLFIVGPDS 176

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++   P+         L+ L+   +  F +RRKTLR + K       L  
Sbjct: 177 FDPPPKVDSAIVRMTPYTTLPVVAHDLKGLEDTVRIGFQQRRKTLRNNYKGTLTAEELES 236

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQ 280
             I+  LR E L + DF RI N L + +
Sbjct: 237 IQIDPTLRPERLDVPDFVRIANYLHEKK 264


>gi|295094395|emb|CBK83486.1| dimethyladenosine transferase [Coprococcus sp. ART55/1]
          Length = 287

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 147/290 (50%), Gaps = 19/290 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           ++N   ++   +  Y+   +K  GQNFL+D +++ KI  ++       V+EIG G G +T
Sbjct: 4   LSNPQVTI-ETIKKYEFAFQKKFGQNFLIDAHVINKIISAADITKDDCVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    A +V+ +E D+   PIL +  +++ N + II DD LKVD  K     N   PI
Sbjct: 63  QYLAES-AGQVVAVEIDKNLLPILDETLAEYDN-VTIINDDILKVDINKIVEERNGGRPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++              S+T++ QKEV +R+     +  YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFEKHVP---LLSVTVMVQKEVADRMQVGPGTKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           +  +  ++ ++ P+ F P P V S VI    +  P       + + ++ + +F +RRKTL
Sbjct: 178 YYAEPYIVANVPPNCFIPRPGVGSAVIRLNRYQEPPVKVKDEQLMFRLIRASFNQRRKTL 237

Query: 238 RQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +         S  +      L   GI  N+R E+LS+ +F  +++ILTD 
Sbjct: 238 QNGIANSGELSFTKEQIAKALESLGISANIRGESLSLAEFAALSDILTDK 287


>gi|332534338|ref|ZP_08410181.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036248|gb|EGI72721.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 268

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/267 (34%), Positives = 133/267 (49%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D +I+ KI  +        ++EIG G G +T+ +  L    + V
Sbjct: 6   HLGHRARKRFGQNFLFDESIIDKIVSAIDPKPEDNLVEIGPGLGAITEPVADLSGH-LTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L +     P +L + Q DA+  DF         +++  NLPYNI T LLF
Sbjct: 65  VELDKDLAQRLIEHPFLGP-KLTVNQGDAMTFDFASLVRDDKKLKVFGNLPYNISTPLLF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E +  + QKEV +R+ A   S  +GRLSV+T +   A  + ++ P  F
Sbjct: 124 HLFE---FSDHIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVVEVPPECF 180

Query: 196 FPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S VI  IP          ++ L  +  EAF +RRKTLR SL  L     L   
Sbjct: 181 KPAPKVDSAVIRLIPKKPEQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTAEELTSI 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+  LRAE LS++ F  I N + DN+
Sbjct: 241 GIDITLRAERLSLQQFIDIANWIYDNK 267


>gi|254491379|ref|ZP_05104558.1| dimethyladenosine transferase [Methylophaga thiooxidans DMS010]
 gi|224462857|gb|EEF79127.1| dimethyladenosine transferase [Methylophaga thiooxydans DMS010]
          Length = 266

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/263 (34%), Positives = 138/263 (52%), Gaps = 8/263 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             +K  GQNFL D  I++ I E+     G  ++EIG G G LT+ LL+     + VIE D
Sbjct: 8   RARKRFGQNFLHDEGIIEAIVEAISPAKGQHLVEIGPGRGALTKPLLSRC-DWLDVIELD 66

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +   P+L+     +  +L I + DAL+ D+        P+R+I NLPYNI T LLF+ + 
Sbjct: 67  RDLIPLLRKQL--NDEQLNIHEADALRFDYRSLQKDGEPLRVIGNLPYNITTPLLFHLLG 124

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                   E +  + Q+EV ERI AQ  +  YGRLS++   + +A ++F + P  F P+P
Sbjct: 125 QGDC---IEDMCFMLQREVVERICAQPGNKQYGRLSIMMQHQCQAELLFTVPPEAFEPAP 181

Query: 200 KVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S +I+  P    +     L+ + K+   AF +RRKT+  +LK +    +  Q GI+ 
Sbjct: 182 KVESAIIYLQPLKQRVGGEVDLDVMGKLVTTAFSQRRKTIANTLKNMITTEVFEQVGIDP 241

Query: 258 NLRAENLSIEDFCRITNILTDNQ 280
             R E +S+E F  +T      Q
Sbjct: 242 TQRPETVSVESFVALTRAYIQKQ 264


>gi|322373748|ref|ZP_08048284.1| dimethyladenosine transferase [Streptococcus sp. C150]
 gi|321278790|gb|EFX55859.1| dimethyladenosine transferase [Streptococcus sp. C150]
          Length = 290

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/293 (33%), Positives = 155/293 (52%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116
           LT+ L    A +V+  E D++  PIL+D    H N +++I +D LK D +    +F N +
Sbjct: 60  LTEFLAENAA-EVMAFEIDERLVPILEDTLRDHDN-IKVINEDVLKADLQTRVKEFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFVVPHTVFVPAPNVDSAILKMTRREQPLVEVKDEDFFFRVSKISFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI DF R+++ L +
Sbjct: 235 KTLWNNLTSHFGKSEEVKAKLEQALENANIKPSIRGEALSITDFARLSDALRE 287


>gi|22537918|ref|NP_688769.1| dimethyladenosine transferase [Streptococcus agalactiae 2603V/R]
 gi|76798247|ref|ZP_00780496.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21]
 gi|33516934|sp|Q8DXR8|RSMA_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|22534816|gb|AAN00642.1|AE014272_13 dimethyladenosine transferase [Streptococcus agalactiae 2603V/R]
 gi|76586400|gb|EAO62909.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21]
          Length = 290

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K+ + + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G 
Sbjct: 1   MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D  ++  N ++++  D LK D     + F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A  N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMIQKEVADRISAMPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ AF  RR
Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|312867557|ref|ZP_07727765.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405]
 gi|311096963|gb|EFQ55199.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405]
          Length = 291

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 151/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D   +  N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLREFDN-VTVVNQDILKVDLNQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +    +++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREEPAVAVKDEDFFFSVSKASFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  +  AG++ ++R E LS+EDF R+ + L +
Sbjct: 235 KTLWNNLTSRFGKTEEVKAKLEAGIQAAGLKPSVRGEALSLEDFARLADGLLE 287


>gi|148998515|ref|ZP_01825956.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70]
 gi|168576615|ref|ZP_02722481.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016]
 gi|307068593|ref|YP_003877559.1| dimethyladenosine transferase [Streptococcus pneumoniae AP200]
 gi|147755708|gb|EDK62754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70]
 gi|183577641|gb|EDT98169.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016]
 gi|306410130|gb|ADM85557.1| Dimethyladenosine transferase (rRNA methylation) [Streptococcus
           pneumoniae AP200]
 gi|332199299|gb|EGJ13377.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41317]
          Length = 290

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 20/283 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    
Sbjct: 9   TKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERA 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANL 125
           A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N + PI+++ANL
Sbjct: 69  A-QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPNLPIKVVANL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+   +   A 
Sbjct: 127 PYYITTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAK 183

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR 243
           + F +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L  
Sbjct: 184 VAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTG 243

Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 244 YFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|126654253|ref|ZP_01726041.1| dimethyladenosine transferase [Bacillus sp. B14905]
 gi|126589286|gb|EAZ83444.1| dimethyladenosine transferase [Bacillus sp. B14905]
          Length = 294

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 141/294 (47%), Gaps = 22/294 (7%)

Query: 1   MTMNNKSHSLK--TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           M   + +  ++   IL  Y    KK +GQNFL+D NIL+ I   +   +    IE+G G 
Sbjct: 1   MMHKDIATPIRTQEILKKYGFSFKKSLGQNFLIDPNILRNIVSHADLTENSGAIEVGPGI 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-- 116
           G LT+ L    A+KV+  E DQ+  P+L+D  S + N + I+  D LK D  K       
Sbjct: 61  GALTEHLA-RSAKKVVSFEIDQRLLPVLEDTLSPY-NNVSIVHSDILKADVAKVIAEEML 118

Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
               I ++ANLPY + T +L   ++            ++ QKEV +RITA+  +  YG L
Sbjct: 119 GIEDIMVVANLPYYVTTPILMKLLNDRLP---IRGFVVMMQKEVADRITAKPGTKEYGSL 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGK 232
           S+   +  KA +   +   VF P P V S VI  I +  P       + L  +T+ +F +
Sbjct: 176 SIAIQYYVKAEIAMTVPKTVFMPQPNVDSAVIRLIKYDEPPVKVINEDFLFVVTRASFVQ 235

Query: 233 RRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           RRKT+  +L         ++      L  A IE   R E L+I++F ++ + L 
Sbjct: 236 RRKTIYNNLQSGLPNGKAQKDFILEALTAASIEPTRRGETLTIQEFGKLADALY 289


>gi|146310264|ref|YP_001175338.1| dimethyladenosine transferase [Enterobacter sp. 638]
 gi|166987694|sp|A4W6F7|RSMA_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|145317140|gb|ABP59287.1| dimethyladenosine transferase [Enterobacter sp. 638]
          Length = 273

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/267 (34%), Positives = 142/267 (53%), Gaps = 8/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   + +K  GQNFL D  +++ I  +     G  ++EIG G   LT+ +      ++ V
Sbjct: 6   HQGHLARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DEMTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLL 134
           IE D+     LK        +L I Q DA+ ++F +    +  P+R+  NLPYNI T L+
Sbjct: 65  IELDRDLAARLK-THPFLGPKLTIYQQDAMTMNFAELSEKLGQPLRVFGNLPYNISTPLM 123

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  +  +   + ++ P  
Sbjct: 124 FHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQIIPVLEVPPTA 180

Query: 195 FFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S V+  +PH         L  L +IT EAF +RRKT+R SL      ++L +
Sbjct: 181 FTPAPKVESAVVRLVPHAVMPHPVKELRVLSRITTEAFNQRRKTIRNSLGNTFTVDVLTE 240

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
            GI+  +RAEN+S+E +C++ N ++DN
Sbjct: 241 LGIDPAMRAENISVEQYCKLANYISDN 267


>gi|55823689|ref|YP_142130.1| dimethyladenosine transferase [Streptococcus thermophilus CNRZ1066]
 gi|62900468|sp|Q5LY12|RSMA_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|55739674|gb|AAV63315.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus
           thermophilus CNRZ1066]
 gi|312279113|gb|ADQ63770.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus
           thermophilus ND03]
          Length = 290

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/293 (32%), Positives = 154/293 (52%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116
           LT+ L    A +V+  E D++  PIL+D    H N +++I +D LK D +    +F N  
Sbjct: 60  LTEFLAE-NASEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L  A I+ ++R E LSI DF R+++ L +
Sbjct: 235 KTLWNNLTSHFGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287


>gi|329723947|gb|EGG60472.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU144]
          Length = 296

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+ KI E+S       VIE+G G G+LT+ L 
Sbjct: 9   PSRTRALLDQYGFNFKKSLGQNFLIDVNIINKIIEASHIDCTTGVIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122
              A+KV+  E DQ+  P+LKD  S + N + II +D LK D  K           I ++
Sbjct: 69  K-NAKKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKTDIAKAVATHLQDCDKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ AQ  +  YG LS++  + T
Sbjct: 127 ANLPYYITTPILLNLMQQDVP---IDGFVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E   K+ + AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEGFFKLAKAAFAQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L  AGI+   R E L+I+DF  +  
Sbjct: 244 YQNFFKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATLYE 286


>gi|152973889|ref|YP_001373406.1| dimethyladenosine transferase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189028800|sp|A7GJV3|RSMA_BACCN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|152022641|gb|ABS20411.1| dimethyladenosine transferase [Bacillus cytotoxicus NVH 391-98]
          Length = 292

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/295 (30%), Positives = 142/295 (48%), Gaps = 20/295 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M      +  K I+  Y    KK +GQNFL+D N+L +I + +        IEIG G G 
Sbjct: 1   MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDYAEIGPKGGAIEIGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNIS 116
           LT+ L    A+KV+  E DQ+  PIL +  + + N + II  D LK +  +     F   
Sbjct: 61  LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYDN-VTIINKDVLKANVHEVFQEQFEEG 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             + ++ANLPY + T +LF  +             ++ QKEVG+R+ A+  +  YG LS+
Sbjct: 119 QDVMVVANLPYYVTTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKDYGSLSI 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              + T+   +  +   VF P P V S+VI  +    PI      +   ++ + +F +RR
Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSSVIRLLKRPKPIVEVIDEKFFFEVVRASFAQRR 235

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTL  +L              E +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 236 KTLMNNLSNNLNDFPKDKELLERILTEIGIDPKRRGETLSIEEFAMLSNALVPHK 290


>gi|302383692|ref|YP_003819515.1| dimethyladenosine transferase [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194320|gb|ADL01892.1| dimethyladenosine transferase [Brevundimonas subvibrioides ATCC
           15264]
          Length = 270

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 110/270 (40%), Positives = 160/270 (59%), Gaps = 7/270 (2%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L+  L  + ++ KK  GQ+FLLDLNI +KI   +G  +G  VIE+G GPG LT+ 
Sbjct: 2   SDLPPLRESLEAHGLLAKKSFGQHFLLDLNITRKIVRLAGPFEGRAVIEVGPGPGGLTRA 61

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           ++   A  V+++EKD +F P+L ++ +    RL II+ DALKV       ++ P  +++N
Sbjct: 62  IVESDAGPVVLVEKDPRFLPLLNELDTG-DGRLRIIEADALKVVEADL--VAGPAHVVSN 118

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+GT LL  W++    P    ++TL+FQKEV ERI A      YGRL+V+     +A
Sbjct: 119 LPYNVGTPLLIKWLTGPWIPH---AMTLMFQKEVAERIVAAPGDDAYGRLAVIAQAVAEA 175

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            ++  +    F P PKV S V+H +PH   P    L+ L+ +T  AFG+RRK LR SLK+
Sbjct: 176 RIVMHLPAAAFTPPPKVASAVVHLVPHADRPDREMLKRLETVTAAAFGQRRKMLRSSLKQ 235

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRIT 273
           LGG  L   AGI+ + RAE + I  F R+ 
Sbjct: 236 LGGGALCEAAGIDPDARAETIDIAGFLRLA 265


>gi|15901808|ref|NP_346412.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4]
 gi|14973492|gb|AAK76052.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4]
          Length = 279

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/279 (33%), Positives = 142/279 (50%), Gaps = 20/279 (7%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G LT+ L    A +V
Sbjct: 2   LERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAA-QV 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNI 129
           +  E D +  PIL D      N + ++ +D LKVD  +    F N   PI+++ANLPY I
Sbjct: 61  MAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLPYYI 119

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+   +   A + F 
Sbjct: 120 TTPILMHLIESGIP---FCEFVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKVAFI 176

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGE 247
           +   VF P+P V S ++  +    P     +     K+++ +F  RRKTL  +L    G+
Sbjct: 177 VPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGK 236

Query: 248 ---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                      L QAG+  ++R E LS+ +F  + + L 
Sbjct: 237 TEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 275


>gi|16125931|ref|NP_420495.1| dimethyladenosine transferase [Caulobacter crescentus CB15]
 gi|27151598|sp|Q9A7N5|RSMA_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|13423097|gb|AAK23663.1| dimethyladenosine transferase [Caulobacter crescentus CB15]
          Length = 258

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/257 (42%), Positives = 159/257 (61%), Gaps = 7/257 (2%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           + +K  GQ+FLLDLN+ +KIA  +   +G TV+E+G GPG LT+ LL  GAR V+ IEKD
Sbjct: 1   MARKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGGLTRALLETGAR-VVAIEKD 59

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +F P+L +++     RLE+++ DALKVD  +      P  +++NLPYN+GT+LL NW++
Sbjct: 60  SRFLPLLAEVAEVAEGRLELVEGDALKVDAAQAA--GGPAHVVSNLPYNVGTQLLINWLT 117

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P    S+TL+FQKEV +RI AQ     YGRL+V+     +A  + D+    F P P
Sbjct: 118 GPFRP---LSMTLMFQKEVADRIVAQPGDDAYGRLAVIAQTLCEARTVMDLPAKAFTPPP 174

Query: 200 KVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S V+  +P   P P   + +L+++T  AFG+RRK LR SLK LGG +L  +AG+  +
Sbjct: 175 KVASAVVRLVPKAEPPPAEVVAALERVTAAAFGQRRKMLRSSLKALGGADLCERAGVSPD 234

Query: 259 LRAENLSIEDFCRITNI 275
            RAE + +  F  +   
Sbjct: 235 ARAEVIDLAGFLDLARA 251


>gi|319946185|ref|ZP_08020425.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
 gi|319747567|gb|EFV99820.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
          Length = 291

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPE 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQKEVADRISAEPNTKAYGALSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +    +++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREEPAVTVKDEDFFFTVSKASFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  +  AG++ ++R E LS+EDF R+ + L D
Sbjct: 235 KTLWNNLTSRFGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLADGLLD 287


>gi|171779142|ref|ZP_02920113.1| hypothetical protein STRINF_00988 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282198|gb|EDT47625.1| hypothetical protein STRINF_00988 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 290

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 149/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N +++I +D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      +   ++++  F  RR
Sbjct: 175 AVQYYMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKIGFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI +F ++ + L +
Sbjct: 235 KTLWNNLTSHFGKADEIKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287


>gi|218132712|ref|ZP_03461516.1| hypothetical protein BACPEC_00573 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992438|gb|EEC58441.1| hypothetical protein BACPEC_00573 [Bacteroides pectinophilus ATCC
           43243]
          Length = 296

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/294 (30%), Positives = 143/294 (48%), Gaps = 24/294 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N +++L  I+  Y    +K  GQNFL+D N+++KI   +G      V+EIG G G +TQ+
Sbjct: 9   NPTNTL-EIIKKYGFGFQKRFGQNFLIDGNVVEKIVREAGITKDDFVLEIGPGIGTMTQI 67

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPIRI 121
           L    AR+V  +E D+   PIL +  + + N + +I +D LKVD  K     N   PI++
Sbjct: 68  LCE-NAREVAAVEIDKNLIPILAETLAPYDN-VSVINEDILKVDVRKLAEEKNDGRPIKV 125

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++     +       ES+T++ QKEV +R+     +  YG LS+   + 
Sbjct: 126 VANLPYYITTPIIMGLFESHVP---LESITIMVQKEVAQRMQVGPGTKDYGALSLAVQFY 182

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQ 239
             A ++  +    F P P V S VI  + H + P+    E    ++ + AF +RRKTL  
Sbjct: 183 ADAQIVLKVPASCFMPRPNVDSAVIKLVRHEDAPVKVKDEQFMFRVIRAAFNQRRKTLAN 242

Query: 240 SLKRLGGEN-------------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           SL      N              L   G+   +R E L++  F  + + L +  
Sbjct: 243 SLANSSELNGSGHACTREDVTTALEAMGLPAGIRGEALTLAQFGELADRLIEMH 296


>gi|262281831|ref|ZP_06059600.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA]
 gi|262262285|gb|EEY80982.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA]
          Length = 290

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADHSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+T+ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRERPAVEVQDEKFFFKVTKASFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L +A +  N+R E L +  F R+++ L  
Sbjct: 235 KTLWNNLTSYFGKSEEVKTKLERALEKADLAANVRGEALDLAAFARLSDALKS 287


>gi|322390323|ref|ZP_08063851.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
           903]
 gi|321142971|gb|EFX38421.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
           903]
          Length = 291

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +    +++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREEPAVAVKDEDFFFSVSKASFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  +  AG++ ++R E LS+EDF R+ + L +
Sbjct: 235 KTLWNNLTSRFGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLADGLLE 287


>gi|15612620|ref|NP_240923.1| dimethyladenosine transferase [Bacillus halodurans C-125]
 gi|27151607|sp|Q9KGK4|RSMA_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|10172669|dbj|BAB03776.1| dimethyladenosine transferase [Bacillus halodurans C-125]
          Length = 289

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 137/284 (48%), Gaps = 19/284 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL+ +    KK +GQNFL+D N+L+ I + +        IEIG G G LT+ L    
Sbjct: 11  TKEILAKHGFTFKKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQLA-RQ 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANL 125
           A++V+  E DQ+  P+L++  + + N + +I +D LK D ++     F     + ++ANL
Sbjct: 70  AKRVVAFEIDQRLIPVLRETLAPYEN-VTVINEDVLKADVKQVIATTFEEGQDLMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T +L   + A         + ++ Q EV +RI A+  +  YG LS+   +   A 
Sbjct: 129 PYYVTTPILMKLLEAKLP---VRGIVVMIQAEVADRIAAKPGTKEYGSLSIAAQYYATAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL-- 241
           +   +   VF P P V S V+       P       E L  I + +F  RRKT+  +L  
Sbjct: 186 LAVKVPKTVFVPQPNVDSAVLRLTIREKPPVTVADEEWLFAIVRASFANRRKTILNNLIH 245

Query: 242 ------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                 ++      L +AGI+ + R E L+IE+F  ++  L   
Sbjct: 246 NLVGKERKDKAVQALAEAGIDPSRRGETLTIEEFANLSEQLQKR 289


>gi|30018312|ref|NP_829943.1| dimethyladenosine transferase [Bacillus cereus ATCC 14579]
 gi|75759603|ref|ZP_00739689.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218232555|ref|YP_002364891.1| dimethyladenosine transferase [Bacillus cereus B4264]
 gi|218895177|ref|YP_002443588.1| dimethyladenosine transferase [Bacillus cereus G9842]
 gi|296500873|ref|YP_003662573.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171]
 gi|33516920|sp|Q81JA5|RSMA_BACCR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729753|sp|B7ISV1|RSMA_BACC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729754|sp|B7HIK9|RSMA_BACC4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|29893852|gb|AAP07144.1| Dimethyladenosine transferase [Bacillus cereus ATCC 14579]
 gi|74492894|gb|EAO56024.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218160512|gb|ACK60504.1| dimethyladenosine transferase [Bacillus cereus B4264]
 gi|218541640|gb|ACK94034.1| dimethyladenosine transferase [Bacillus cereus G9842]
 gi|296321925|gb|ADH04853.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171]
 gi|326937833|gb|AEA13729.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 292

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/295 (30%), Positives = 142/295 (48%), Gaps = 20/295 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M      +  K I+  Y    KK +GQNFL+D N+L +I + +        IEIG G G 
Sbjct: 1   MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----IS 116
           LT+ L    A+KV+  E DQ+  PIL +  + + N + +I  D LK D  + FN      
Sbjct: 61  LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEG 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             + ++ANLPY I T +LF  +             ++ QKEVG+R+ A+  +  YG LS+
Sbjct: 119 QDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSI 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              + T+   +  +   VF P P V S +I  +    P+    +     ++ + +F +RR
Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRR 235

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTL  +L              + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 236 KTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 290


>gi|51894384|ref|YP_077075.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM
           14863]
 gi|62900510|sp|Q67JB9|RSMA_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|51858073|dbj|BAD42231.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM
           14863]
          Length = 285

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/286 (30%), Positives = 144/286 (50%), Gaps = 15/286 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N   +LK +++ Y + P+  +GQNFL+D  +L  I  ++G      V+EIG G G 
Sbjct: 1   MDLANPG-ALKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----IS 116
           LTQ L    A +V+ +E D+    +L D   +  + +E+I  DA ++D  K         
Sbjct: 60  LTQRLAA-KAGRVVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLHKLLGERLAPG 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
              +++ANLPY I T L+   +  +        + ++ QKEV +R+ +   S  YG LSV
Sbjct: 119 QKAKVVANLPYYITTPLVMRLLEEELP---LSHVVVMVQKEVADRMVSPPGSKAYGALSV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGKRRK 235
              + T+  ++  +S   F P P+V S V+        P+    E+  ++ + AFG+RRK
Sbjct: 176 AVQYYTEPRIVLRVSRASFMPQPEVDSAVVSLRYRERPPVDAPPEAFFRVVRAAFGQRRK 235

Query: 236 TLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNIL 276
           +L  +L  LG E       L  AGI+   R E+LS+E+F  +   L
Sbjct: 236 SLVNALTSLGVEKAAVHAALEAAGIDPGRRGESLSLEEFAAVARTL 281


>gi|88859121|ref|ZP_01133762.1| dimethyladenosine transferase [Pseudoalteromonas tunicata D2]
 gi|88819347|gb|EAR29161.1| dimethyladenosine transferase [Pseudoalteromonas tunicata D2]
          Length = 268

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 136/267 (50%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     KK  GQNFL D  I+ KI  +        ++EIG G G +T+ +  + A  + V
Sbjct: 6   HLGHRAKKRFGQNFLNDAMIIDKIVTAIDPKPEDCLVEIGPGLGAITEPVTDI-AGHLTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L       P +L + Q DA++ DF      +  +++  NLPYNI T LLF
Sbjct: 65  VELDKDLVERLIHHPFLGP-KLTVHQGDAMRFDFSTLVEENKKLKVFGNLPYNISTPLLF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           E +  + QKEV +R+ A  +   YGRLSV+T +   A  + ++ P  F
Sbjct: 124 HLFDYAEH---IEHMHFMLQKEVVKRMVASPDCKAYGRLSVMTQYYCHAIPVIEVPPECF 180

Query: 196 FPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S V+  IP         C + L  +  EAF +RRKT+R SL  L   + + + 
Sbjct: 181 KPAPKVDSAVVRLIPKKPEQLRAKCTKILNTVCLEAFNQRRKTIRNSLSNLLTTDDMIEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           G+++  RAENLS++ +  I N L DN+
Sbjct: 241 GLDSKARAENLSLDQYIDIANWLYDNK 267


>gi|226309677|ref|YP_002769571.1| dimethyladenosine transferase [Brevibacillus brevis NBRC 100599]
 gi|226092625|dbj|BAH41067.1| dimethyladenosine transferase [Brevibacillus brevis NBRC 100599]
          Length = 297

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 134/282 (47%), Gaps = 19/282 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  Y    KK +GQNFL+D NIL  I   +        IEIG G G LT+ L 
Sbjct: 12  PTRTKEILEKYGFAFKKSLGQNFLIDTNILHNIVSEADLTKEKGAIEIGPGIGALTEQL- 70

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122
              A+KV+ IE DQ+  PIL+D  S + N +E++  D L +D +K           + ++
Sbjct: 71  GRAAKKVMAIEIDQRLLPILQDTLSPYEN-IEVVHGDVLGLDLKKLIEEKMTGVEKLSVV 129

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +L   +         E++ ++ QKEV ERI A+  +  YG LSV   +  
Sbjct: 130 ANLPYYVTTPILMKLLEERLP---LENIVVMIQKEVAERIAAKPGTKDYGSLSVAAQFYA 186

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
              +   +   VF P P V S VI       P       +   ++ + +F +RRKTL  +
Sbjct: 187 DTEVAMIVPASVFIPRPNVDSAVIRLKVRDRPPVEVDDQDVFFRVVRCSFAQRRKTLLNN 246

Query: 241 L-KRLGGE-------NLLHQAGIETNLRAENLSIEDFCRITN 274
           L   L  +        +L   GI+   R E LS+++F R+ N
Sbjct: 247 LMNGLFPKTQKDEVIQMLTDIGIDPTRRGETLSLDEFARLAN 288


>gi|25011861|ref|NP_736256.1| dimethyladenosine transferase [Streptococcus agalactiae NEM316]
 gi|77414160|ref|ZP_00790325.1| dimethyladenosine transferase [Streptococcus agalactiae 515]
 gi|33516935|sp|Q8E3D7|RSMA_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|24413402|emb|CAD47481.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159783|gb|EAO70929.1| dimethyladenosine transferase [Streptococcus agalactiae 515]
          Length = 290

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K+ + + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G 
Sbjct: 1   MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D  ++  N ++++  D LK D     + F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I        +    ++ Q+EV +RI+A  N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIEGKIP---FAEFVVMMQREVADRISAMPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ AF  RR
Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|27469208|ref|NP_765845.1| dimethyladenosine transferase [Staphylococcus epidermidis ATCC
           12228]
 gi|57866030|ref|YP_187727.1| dimethyladenosine transferase [Staphylococcus epidermidis RP62A]
 gi|251809801|ref|ZP_04824274.1| dimethyladenosine transferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875423|ref|ZP_06284295.1| dimethyladenosine transferase [Staphylococcus epidermidis SK135]
 gi|293366135|ref|ZP_06612822.1| dimethyladenosine transferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|33516932|sp|Q8CQU5|RSMA_STAES RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900459|sp|Q5HRR2|RSMA_STAEQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|27316757|gb|AAO05932.1|AE016751_227 dimethyladenosine transferase [Staphylococcus epidermidis ATCC
           12228]
 gi|57636688|gb|AAW53476.1| dimethyladenosine transferase [Staphylococcus epidermidis RP62A]
 gi|251806669|gb|EES59326.1| dimethyladenosine transferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295780|gb|EFA88302.1| dimethyladenosine transferase [Staphylococcus epidermidis SK135]
 gi|291319729|gb|EFE60088.1| dimethyladenosine transferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733035|gb|EGG69374.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU028]
 gi|329737895|gb|EGG74123.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU045]
          Length = 296

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+ KI E+S       VIE+G G G+LT+ L 
Sbjct: 9   PSRTRALLDQYGFNFKKSLGQNFLIDVNIINKIIEASHIDCTTGVIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRII 122
              A+KV+  E DQ+  P+LKD  S + N + II +D LK D  K  +        I ++
Sbjct: 69  K-NAKKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKADIAKAVDTHLQDCDKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ AQ  +  YG LS++  + T
Sbjct: 127 ANLPYYITTPILLNLMQQDVP---IDGFVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E   K+ + AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEGFFKLAKAAFAQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L  AGI+   R E L+I+DF  +  
Sbjct: 244 YQNFFKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATLYE 286


>gi|313905501|ref|ZP_07838865.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6]
 gi|313469685|gb|EFR65023.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6]
          Length = 299

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 149/289 (51%), Gaps = 19/289 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N ++++  IL  Y    +K  GQNFL+D ++L+KI  ++   +   V+EIG G G LT
Sbjct: 14  LGNPANTI-EILQKYGFRFQKKFGQNFLIDPHVLEKIVRAADISEDDCVMEIGPGIGTLT 72

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    AR+V  +E D+   PIL + + +  + + +I +D LKVD ++     N   P+
Sbjct: 73  QYLA-RYAREVFAVEIDKNLIPILTEDTLKDWDNVTVINEDCLKVDMKQLVEEHNGGKPV 131

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T +L   +        +ES+T++ QKEV +R+ A   S  YG LS+   
Sbjct: 132 KVVANLPYYITTPILMELLEKHVP---FESITVMVQKEVADRMQAGPGSKDYGALSLAVQ 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESL-KKITQEAFGKRRKT 236
           + T   +M ++ P+ F P P V S VI        N +    E L  ++ + +F +RRKT
Sbjct: 189 YYTVPEIMANVPPNCFIPRPNVGSAVIRLKGRTEENRVQVQDEHLMFRLIRASFAQRRKT 248

Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L   L+            E ++   G+   +R E L++E F ++ +   
Sbjct: 249 LMNGLRNSQELDFSKEEIEKVIQDCGLPAAVRGEALTLEQFAQLADHFA 297


>gi|306834382|ref|ZP_07467499.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338]
 gi|304423555|gb|EFM26704.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338]
          Length = 290

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N +++I +D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+I+ANLPY I T +L + I +      +    ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKIVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFVVPRTVFIPAPNVDSAILKMTRREQPLVQVKDEDFFFRVSKISFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI +F ++ + L +
Sbjct: 235 KTLWNNLTSHFGKADETKAKLEQALEIAEIKPSIRGEALSIAEFAKLADALKE 287


>gi|319745733|gb|EFV98030.1| dimethyladenosine transferase [Streptococcus agalactiae ATCC 13813]
          Length = 290

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/293 (32%), Positives = 149/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K+ + + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G 
Sbjct: 1   MHIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     + F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLRDFDN-VQVVNKDILKADLQTQIQAFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A  N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAMPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ AF  RR
Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSAILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|254429167|ref|ZP_05042874.1| dimethyladenosine transferase [Alcanivorax sp. DG881]
 gi|196195336|gb|EDX90295.1| dimethyladenosine transferase [Alcanivorax sp. DG881]
          Length = 270

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/265 (35%), Positives = 140/265 (52%), Gaps = 8/265 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQ+FL D N++ ++  + G   G T++EIG G G LT  LL      + V+E 
Sbjct: 4   HRTRKRFGQHFLHDRNLVDRMIRTLGLQAGDTLVEIGPGRGALTYPLLEEIPH-LHVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+    +L+      P+RL I + DAL+ DF        P+R+I NLPYNI T L+F+ +
Sbjct: 63  DRDLIALLRQ--ENTPDRLSIHESDALRFDFRALKPADKPLRVIGNLPYNISTPLIFHLL 120

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +          +T + QKEV ER+TA   +  +GRLS++  +  +A  +F + P  F P 
Sbjct: 121 AQADA---ISDMTFMLQKEVVERLTASPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSPP 177

Query: 199 PKVTSTVIHFIPHLNPI-PCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P+V S V+  IPH +P  P   E  L+K+  +AF +RRK +R  LK           GI+
Sbjct: 178 PRVDSAVVRLIPHASPPHPADDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFEALGID 237

Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281
             LR + LS+ D+  + NI   N D
Sbjct: 238 AGLRPDQLSVADYVALANISRPNAD 262


>gi|206972590|ref|ZP_03233533.1| dimethyladenosine transferase [Bacillus cereus AH1134]
 gi|206732492|gb|EDZ49671.1| dimethyladenosine transferase [Bacillus cereus AH1134]
          Length = 292

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/295 (30%), Positives = 143/295 (48%), Gaps = 20/295 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M      +  K I+  Y    KK +GQNFL+D N+L +I + +        IEIG G G 
Sbjct: 1   MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----IS 116
           LT+ L    A+KV+  E DQ+  PIL +  + + N + +I  D LK D  + FN      
Sbjct: 61  LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEG 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             + ++ANLPY I T +LF  +             ++ QKEVG+R+ A+  +  YG LS+
Sbjct: 119 QDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSI 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              + T+   +  +   VF P P V ST+I  +    P+    +     ++ + +F +RR
Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSTIIRLLKRPKPVVEVTDETFFFEVVRASFAQRR 235

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTL  +L              + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 236 KTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 290


>gi|253681083|ref|ZP_04861886.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873]
 gi|253562932|gb|EES92378.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873]
          Length = 281

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 147/282 (52%), Gaps = 13/282 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           + K I+  Y     K +GQNFL D  +L  I   S   +   VIEIG G G LT+ LL  
Sbjct: 5   TTKEIVQKYNFKFTKSLGQNFLTDQTVLDDIVIGSEVCEEDFVIEIGPGVGTLTKELLK- 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A+KV  +E D    PIL++   +  N  ++I  DALK++F++       ++++ANLPY 
Sbjct: 64  KAKKVCAVELDSNLIPILQEELKEF-NNFQLIHKDALKINFKELIGDEKSVKVVANLPYY 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + T ++   +        ++SLT++ QKEV ERI ++ N   YG LS+L  +    T++ 
Sbjct: 123 VTTPIIARLLKE---GYNFKSLTIMIQKEVAERIASEPNCKEYGALSILVQYYCDTTIIR 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG- 245
            + P  F P PKV S +I       P       E   KI +++F  RRKTLR ++K LG 
Sbjct: 180 KVPPTCFIPQPKVDSIIIRLDRLNEPRVKVQDKELFFKIVRQSFNMRRKTLRNAIKSLGF 239

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
                 E + + A I+   R E L++E+F ++ + +   +++
Sbjct: 240 ISSDKIEKVFNDANIDPRRRGETLTLEEFGKLADSVYKIKEV 281


>gi|303241033|ref|ZP_07327543.1| dimethyladenosine transferase [Acetivibrio cellulolyticus CD2]
 gi|302591458|gb|EFL61196.1| dimethyladenosine transferase [Acetivibrio cellulolyticus CD2]
          Length = 279

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/277 (31%), Positives = 140/277 (50%), Gaps = 17/277 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K ++  Y I   K +GQNFL D  ++ +I +++       V+EIG G G++T  L +  
Sbjct: 5   TKELIKKYGIKLTKSLGQNFLTDDKVVTRIVDTAEITYDDLVMEIGPGIGSMTGELASR- 63

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPY 127
           A KV+ +E D+   P LK+   +  N LEII +D +KV+ +       +  +++ ANLPY
Sbjct: 64  AGKVVAVEIDKYLIPALKENLKEFSN-LEIINEDIMKVNVKDITVNGQNMRVKVAANLPY 122

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++   +  +      E +  + QKEV +R+ A+     YG LSV   +  +   +
Sbjct: 123 YITTPIIMKLLEEEN---DIELMVFMVQKEVAQRMVAKPGGKDYGALSVAVQYYAQPEKV 179

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           FD+ PH F P P+V ST++    +  P       +   K+ + +FG+RRKTL  +L   G
Sbjct: 180 FDVPPHCFVPQPEVDSTIVKLKKNKMPPVDLKDKDMFFKVVKASFGQRRKTLLNALTNFG 239

Query: 246 G--------ENLLHQAGIETNLRAENLSIEDFCRITN 274
           G          +L +  I  N R E LSIE F  ++N
Sbjct: 240 GFNKSKEEIREILIKLNINENARGETLSIEQFASLSN 276


>gi|332140204|ref|YP_004425942.1| dimethyladenosine transferase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550226|gb|AEA96944.1| dimethyladenosine transferase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 275

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/272 (31%), Positives = 134/272 (49%), Gaps = 11/272 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  ++ KI  +    +   ++EIG G G LT  +       + V
Sbjct: 5   HLGHTARKRFGQNFLHDDYVIGKIVAAIAPKNEQNLVEIGPGLGALTDPVCEE-VDALTV 63

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGT 131
           IE D+     L+     +  +L +I+ DA+ +DF             +R+  NLPYNI T
Sbjct: 64  IELDRDLAKRLRHH-PFNGEKLTVIEQDAMTMDFGALSKEMPLKDKKLRVFGNLPYNIST 122

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L+F+           E +  + QKEV  R+ A   S +YGRLSV+  +      + ++ 
Sbjct: 123 PLMFHLFDHAHC---IEDMHFMLQKEVVNRLAAGPGSKNYGRLSVMAQYYCHVIPVLNVP 179

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           P  F P PKV S V+  +PH +P      + +L+++  +AF +RRKT+R SLK    E  
Sbjct: 180 PGAFKPPPKVDSAVVKLVPHQSPPVDVVSVSTLERVCAQAFNQRRKTIRNSLKDSLSEEE 239

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           + + GI+   RAE LS+ DF  I N ++  + 
Sbjct: 240 IRELGIDPTCRAEVLSLNDFATIANAVSAKES 271


>gi|18311499|ref|NP_563433.1| dimethyladenosine transferase [Clostridium perfringens str. 13]
 gi|110799025|ref|YP_697204.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124]
 gi|110801894|ref|YP_699773.1| dimethyladenosine transferase [Clostridium perfringens SM101]
 gi|168213441|ref|ZP_02639066.1| dimethyladenosine transferase [Clostridium perfringens CPE str.
           F4969]
 gi|169343266|ref|ZP_02864277.1| dimethyladenosine transferase [Clostridium perfringens C str.
           JGS1495]
 gi|182624345|ref|ZP_02952130.1| dimethyladenosine transferase [Clostridium perfringens D str.
           JGS1721]
 gi|27151580|sp|Q8XHG8|RSMA_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600857|sp|Q0TMD6|RSMA_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600859|sp|Q0SQ34|RSMA_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|18146183|dbj|BAB82223.1| dimethyladenosine transferase [Clostridium perfringens str. 13]
 gi|110673672|gb|ABG82659.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124]
 gi|110682395|gb|ABG85765.1| dimethyladenosine transferase [Clostridium perfringens SM101]
 gi|169298564|gb|EDS80645.1| dimethyladenosine transferase [Clostridium perfringens C str.
           JGS1495]
 gi|170715038|gb|EDT27220.1| dimethyladenosine transferase [Clostridium perfringens CPE str.
           F4969]
 gi|177910563|gb|EDT72936.1| dimethyladenosine transferase [Clostridium perfringens D str.
           JGS1721]
          Length = 285

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 13/284 (4%)

Query: 1   MTMNN-KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N  K    K ++  Y     K +GQNFL+D ++ + I   +   +   VIEIG G G
Sbjct: 1   MDINEIKDIKTKELVQKYNFRFSKSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            LT  LL   A++V+ IE D    PIL      +P + ++I +DALKVDF +       +
Sbjct: 61  TLTVQLLKR-AKRVVAIELDSSLIPILTAELGDNP-KFQLIHNDALKVDFNEIIGDEKSV 118

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY + T ++ N +        ++SLT++ QKEV ER+ A+ N   YG LS+L  
Sbjct: 119 KLVANLPYYVTTPIIVNLLKG---GYNFKSLTIMIQKEVAERMNAEPNCKDYGALSILVQ 175

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           +     ++  + P  F P PKV S VI       P       +   +I + AF  RRKTL
Sbjct: 176 YYCNTKIVRKVPPSCFIPRPKVDSIVIRLERLEEPSVKVKNEKLFFEIVRHAFNMRRKTL 235

Query: 238 RQS-----LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +     L +   E    +AGI+   R E LS+ +F  +++ +
Sbjct: 236 WNATKNVKLPKELMEKAYEEAGIDPKRRGETLSLAEFGALSDAI 279


>gi|322834455|ref|YP_004214482.1| dimethyladenosine transferase [Rahnella sp. Y9602]
 gi|321169656|gb|ADW75355.1| dimethyladenosine transferase [Rahnella sp. Y9602]
          Length = 275

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 145/265 (54%), Gaps = 8/265 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  ++  I  +   + G  V+EIG G   LT+ + +     + V
Sbjct: 6   HQGHFARKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLAALTEPVASRL-DSMTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLL 134
           IE D+     L++ + +   +L +IQ DA+K++F +       P+R+  NLPYNI T L+
Sbjct: 65  IELDRDLATRLEN-NPKFQGKLRVIQSDAMKINFGELSEELGQPLRVFGNLPYNISTPLM 123

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+     T+    + +  + QKEV  R+ A  NS  YGRL+V+  +      + ++ P  
Sbjct: 124 FHLF---TYTNAIKDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLEVPPES 180

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S V+  +PH   P P   +  L ++T +AF +RRKT+R SL  L     + +
Sbjct: 181 FTPAPKVESAVVRLVPHEVIPYPVPDIRILSRLTTDAFNQRRKTVRNSLGHLFTPEQMTE 240

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
            G++ ++RAEN+S+E FC++ N L+
Sbjct: 241 LGLDLSMRAENISVEQFCKLANWLS 265


>gi|323483571|ref|ZP_08088956.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum
           WAL-14163]
 gi|323403127|gb|EGA95440.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum
           WAL-14163]
          Length = 292

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 145/288 (50%), Gaps = 19/288 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N  +++  I+  Y    +K  GQNFL+D ++L KI  ++G      V+EIG G G +T
Sbjct: 5   LGNPKNTI-EIIQKYNFAFQKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMT 63

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    A +V+ +E D    PIL++    + N + +I +D LK+D  K    +N   PI
Sbjct: 64  QYLAE-NAGRVVAVEIDSNLIPILEETLKDYDN-ITVINEDILKLDINKLAQEYNGGRPI 121

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +++T++ QKEV +R+     +  YG LS+   
Sbjct: 122 KVVANLPYYITTPIIMGLFESGVP---IDNITVMVQKEVADRMQVGPGTKDYGALSLAVQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237
           +  +  ++ ++ P+ F P P V S VI    H  P       E + K+ + +F +RRKTL
Sbjct: 179 YYAEPYIVANVPPNCFIPRPNVGSAVIRLTRHRTPPVEVDDRELMFKLIRASFNQRRKTL 238

Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
              L         +      +   G+  ++R E L+++ F  + N+L+
Sbjct: 239 LNGLNNSPEINISKEKIAEAIEALGVSASVRGEALALKQFAELANLLS 286


>gi|304413708|ref|ZP_07395152.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Candidatus Regiella insecticola LSR1]
 gi|304283799|gb|EFL92193.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Candidatus Regiella insecticola LSR1]
          Length = 280

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 13/280 (4%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M NKSH      SH   I ++  GQNFL D +I+  I  +   + G  ++EIG+G G LT
Sbjct: 9   MKNKSHK-----SHQGHIARQRFGQNFLKDPHIIDSIVSAIHPIPGEAMVEIGSGLGVLT 63

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + +       + VIE D+     L +       +L I Q DA+  DF         P+R+
Sbjct: 64  KPVADR-IDHMTVIELDRDLAARLAEH-PTLKEKLTIYQQDAMNFDFSLLAEGAGQPLRV 121

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+      +      +  + QKEV  R+ A  ++  YGRL+V+  + 
Sbjct: 122 FGNLPYNISTPLMFHLF---NYTKIIRDMHFMLQKEVVNRLVAGPHNKAYGRLTVMAQYY 178

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQ 239
            +   + ++ P  F P+PKV S V+  +PH   P P      L++IT +AF +RRK +R 
Sbjct: 179 CQIIPIVEVPPEAFTPAPKVDSAVVRLVPHQQLPNPVSDTRILRQITTQAFNQRRKIIRN 238

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           SL +L     L +  I+ N+RAENLS+  +CR+ N L+D 
Sbjct: 239 SLGKLFTAEQLTELDIDPNVRAENLSVAQYCRLANWLSDQ 278


>gi|227528872|ref|ZP_03958921.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
 gi|227351195|gb|EEJ41486.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
          Length = 297

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/297 (29%), Positives = 153/297 (51%), Gaps = 22/297 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           +T      + ++IL+ Y +  KK  GQNFL D  IL++I E++   D   VIEIG G G 
Sbjct: 4   LTQIGSRKTTRSILNEYGLHAKKGFGQNFLTDPAILQRIVEAAEVTDADNVIEIGPGIGA 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NI 115
           LT+ L    A +V+ +E DQ   P+L+   + + N + +I  D L+ +  +       + 
Sbjct: 64  LTEKLA-QAAGQVVAVEIDQDLIPVLEKTLAAYDN-VTVINQDILRANLPELIQQQFTDP 121

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           + PI+++ANLPY I + +L N +++   P  W S+T++ QKEV +R+TA+  +  YG L+
Sbjct: 122 TKPIKVVANLPYYITSPILMNLLAS---PVEWSSITVMMQKEVAQRLTAKPGTKQYGALT 178

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGK 232
           +   ++  A + F++S H F P+P V S ++       P+   P   + L    +  F  
Sbjct: 179 LAIEYQMDAEVAFNVSRHSFIPAPNVDSAIVVLKQRQQPLTTKPFDKQKLMGFIRGCFAH 238

Query: 233 RRKTLRQSLKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           RRK+L  +L+ + G++          L +  I    R E L++  F  + N L   +
Sbjct: 239 RRKSLWNNLQSVIGKDANIKAKMTKVLEENEISPQFRPEKLTLAQFINLLNALHQEK 295


>gi|251778936|ref|ZP_04821856.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243083251|gb|EES49141.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 283

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/276 (34%), Positives = 141/276 (51%), Gaps = 12/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K ++  Y     K +GQNFLLD ++L  I + +   +   +IEIG G G LT  LL   
Sbjct: 8   TKELVKKYNFRFSKSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLL-QK 66

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V  IE D    PIL+    ++ ++ E+I +DALKVDF +       ++++ANLPY +
Sbjct: 67  AKRVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYV 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   +  +     +ESLT++ QKEV ERI A+ N   YG LSVL  +     ++  
Sbjct: 126 TTPIIVKLLKEN---HKFESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRK 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS-----LK 242
           +SP  F P PKV S VI      NP       + L  I +  F  RRKTL  +     L 
Sbjct: 183 VSPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLS 242

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +   +       I+   RAE LSIE+F  + + + D
Sbjct: 243 KEDLQKAFDYCNIDPKRRAETLSIEEFAVLADSIHD 278


>gi|71279824|ref|YP_271174.1| dimethyladenosine transferase [Colwellia psychrerythraea 34H]
 gi|119365017|sp|Q47VJ8|RSMA_COLP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71145564|gb|AAZ26037.1| dimethyladenosine transferase [Colwellia psychrerythraea 34H]
          Length = 301

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 148/283 (52%), Gaps = 15/283 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K         H     KK  GQNFL +  ++  I ++     G  +IEIG G G LT
Sbjct: 1   MNDK--------KHLGHQAKKRFGQNFLHNDAVISDIVDAINPEPGENLIEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + ++   A K+ V+E D+     L+         L I + DALK DF +      P+RI 
Sbjct: 53  EPVIER-AGKLSVVELDRDLAHRLRHH-PFLAKDLTIYETDALKFDFSELATEEQPLRIF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+ +   T+    + +  + QKEV ER+ A  +   YGRLS++T ++ 
Sbjct: 111 GNLPYNISTPLIFHLL---TFKDKVKDMHFMLQKEVVERMAAGPHCKAYGRLSIMTQYQC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQS 240
           +   + +I P  F P+PKV S ++  IPH         + +L  +   AF +RRKT+R +
Sbjct: 168 QVFPVMEIGPEAFKPAPKVDSAIVRLIPHAHIENPVKDINALNTVCLAAFNQRRKTIRNT 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            K+L  E  L +  I+ NLR ENLS++++ ++ + + DN   A
Sbjct: 228 FKKLITEAQLAELNIDANLRPENLSLDEYKKLADFIVDNPPEA 270


>gi|30260231|ref|NP_842608.1| dimethyladenosine transferase [Bacillus anthracis str. Ames]
 gi|42779120|ref|NP_976367.1| dimethyladenosine transferase [Bacillus cereus ATCC 10987]
 gi|47525294|ref|YP_016643.1| dimethyladenosine transferase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569890|ref|ZP_00240557.1| dimethyladenosine transferase [Bacillus cereus G9241]
 gi|49183075|ref|YP_026327.1| dimethyladenosine transferase [Bacillus anthracis str. Sterne]
 gi|49477600|ref|YP_034395.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52145175|ref|YP_081654.1| dimethyladenosine transferase [Bacillus cereus E33L]
 gi|65317501|ref|ZP_00390460.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Bacillus
           anthracis str. A2012]
 gi|165872549|ref|ZP_02217181.1| dimethyladenosine transferase [Bacillus anthracis str. A0488]
 gi|167635072|ref|ZP_02393389.1| dimethyladenosine transferase [Bacillus anthracis str. A0442]
 gi|167641541|ref|ZP_02399789.1| dimethyladenosine transferase [Bacillus anthracis str. A0193]
 gi|170688890|ref|ZP_02880092.1| dimethyladenosine transferase [Bacillus anthracis str. A0465]
 gi|170707547|ref|ZP_02898000.1| dimethyladenosine transferase [Bacillus anthracis str. A0389]
 gi|177655321|ref|ZP_02936850.1| dimethyladenosine transferase [Bacillus anthracis str. A0174]
 gi|190568974|ref|ZP_03021875.1| dimethyladenosine transferase [Bacillus anthracis Tsiankovskii-I]
 gi|196036349|ref|ZP_03103746.1| dimethyladenosine transferase [Bacillus cereus W]
 gi|196041767|ref|ZP_03109057.1| dimethyladenosine transferase [Bacillus cereus NVH0597-99]
 gi|206977937|ref|ZP_03238824.1| dimethyladenosine transferase [Bacillus cereus H3081.97]
 gi|217957617|ref|YP_002336159.1| dimethyladenosine transferase [Bacillus cereus AH187]
 gi|218901242|ref|YP_002449076.1| dimethyladenosine transferase [Bacillus cereus AH820]
 gi|222093811|ref|YP_002527860.1| dimethyladenosine transferase [Bacillus cereus Q1]
 gi|227812714|ref|YP_002812723.1| dimethyladenosine transferase [Bacillus anthracis str. CDC 684]
 gi|229601390|ref|YP_002864692.1| dimethyladenosine transferase [Bacillus anthracis str. A0248]
 gi|254682332|ref|ZP_05146193.1| dimethyladenosine transferase [Bacillus anthracis str. CNEVA-9066]
 gi|254724182|ref|ZP_05185967.1| dimethyladenosine transferase [Bacillus anthracis str. A1055]
 gi|254733577|ref|ZP_05191298.1| dimethyladenosine transferase [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744655|ref|ZP_05202334.1| dimethyladenosine transferase [Bacillus anthracis str. Kruger B]
 gi|254756360|ref|ZP_05208389.1| dimethyladenosine transferase [Bacillus anthracis str. Vollum]
 gi|254762416|ref|ZP_05214258.1| dimethyladenosine transferase [Bacillus anthracis str. Australia
           94]
 gi|300119136|ref|ZP_07056837.1| dimethyladenosine transferase [Bacillus cereus SJ1]
 gi|301051777|ref|YP_003789988.1| dimethyladenosine transferase [Bacillus anthracis CI]
 gi|33516921|sp|Q81W00|RSMA_BACAN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900500|sp|Q63HJ1|RSMA_BACCZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900530|sp|Q6HPX5|RSMA_BACHK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900550|sp|Q73FG7|RSMA_BACC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729752|sp|B7JK47|RSMA_BACC0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729755|sp|B7HPV2|RSMA_BACC7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807857|sp|C3P9I6|RSMA_BACAA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807858|sp|C3LJ13|RSMA_BACAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807860|sp|B9IZC4|RSMA_BACCQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|30253552|gb|AAP24094.1| dimethyladenosine transferase [Bacillus anthracis str. Ames]
 gi|42735035|gb|AAS38975.1| dimethyladenosine transferase [Bacillus cereus ATCC 10987]
 gi|47500442|gb|AAT29118.1| dimethyladenosine transferase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47553424|gb|EAL11808.1| dimethyladenosine transferase [Bacillus cereus G9241]
 gi|49177002|gb|AAT52378.1| dimethyladenosine transferase [Bacillus anthracis str. Sterne]
 gi|49329156|gb|AAT59802.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51978644|gb|AAU20194.1| dimethyladenosine transferase [Bacillus cereus E33L]
 gi|164711677|gb|EDR17222.1| dimethyladenosine transferase [Bacillus anthracis str. A0488]
 gi|167510526|gb|EDR85924.1| dimethyladenosine transferase [Bacillus anthracis str. A0193]
 gi|167529546|gb|EDR92296.1| dimethyladenosine transferase [Bacillus anthracis str. A0442]
 gi|170127543|gb|EDS96417.1| dimethyladenosine transferase [Bacillus anthracis str. A0389]
 gi|170667114|gb|EDT17875.1| dimethyladenosine transferase [Bacillus anthracis str. A0465]
 gi|172080162|gb|EDT65255.1| dimethyladenosine transferase [Bacillus anthracis str. A0174]
 gi|190559898|gb|EDV13882.1| dimethyladenosine transferase [Bacillus anthracis Tsiankovskii-I]
 gi|195990979|gb|EDX54950.1| dimethyladenosine transferase [Bacillus cereus W]
 gi|196027387|gb|EDX66004.1| dimethyladenosine transferase [Bacillus cereus NVH0597-99]
 gi|206743843|gb|EDZ55263.1| dimethyladenosine transferase [Bacillus cereus H3081.97]
 gi|217065788|gb|ACJ80038.1| dimethyladenosine transferase [Bacillus cereus AH187]
 gi|218538262|gb|ACK90660.1| dimethyladenosine transferase [Bacillus cereus AH820]
 gi|221237858|gb|ACM10568.1| dimethyladenosine transferase [Bacillus cereus Q1]
 gi|227006542|gb|ACP16285.1| dimethyladenosine transferase [Bacillus anthracis str. CDC 684]
 gi|229265798|gb|ACQ47435.1| dimethyladenosine transferase [Bacillus anthracis str. A0248]
 gi|298723458|gb|EFI64199.1| dimethyladenosine transferase [Bacillus cereus SJ1]
 gi|300373946|gb|ADK02850.1| dimethyladenosine transferase [Bacillus cereus biovar anthracis
           str. CI]
 gi|324324031|gb|ADY19291.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 292

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/295 (29%), Positives = 141/295 (47%), Gaps = 20/295 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M      +  K I+  Y    KK +GQNFL+D N+L +I + +        IEIG G G 
Sbjct: 1   MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNIS 116
           LT+ L    A+KV+  E DQ+  PIL +  + + N + +I  D LK D  +     F   
Sbjct: 61  LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEG 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             + ++ANLPY I T +LF  +             ++ QKEVG+R+ A+  +  YG LS+
Sbjct: 119 QDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSI 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              + T+   +  +   VF P P V S +I  +    P+    +     ++ + +F +RR
Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRR 235

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTL  +L              + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 236 KTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 290


>gi|329117503|ref|ZP_08246220.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020]
 gi|326907908|gb|EGE54822.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020]
          Length = 290

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 146/284 (51%), Gaps = 20/284 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL H+    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ +    
Sbjct: 9   TRAILEHHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFIAENA 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A +V+  E D +  PILKD      N ++++  D LK D     + F N   PI+++ANL
Sbjct: 69  A-EVMAFEIDDRLIPILKDTLRDFDN-VQLVNQDILKADLQTQIKAFKNPELPIKVVANL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+   +   A 
Sbjct: 127 PYYITTPILMHLIDSKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSIAVQYYMDAK 183

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKR 243
           + F +   VF P+P V S ++       P+      + L ++++ +F  RRKTL  +L  
Sbjct: 184 VAFIVPRTVFVPAPNVDSAILKMTRRDQPLVAVQDEDFLFRVSKASFVHRRKTLWNNLTS 243

Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             G+           L  + I  ++R E LSIE F ++ + L +
Sbjct: 244 HFGKTEEIKANLTKALEISEISPSIRGEALSIEQFGKLADALKE 287


>gi|163938049|ref|YP_001642933.1| dimethyladenosine transferase [Bacillus weihenstephanensis KBAB4]
 gi|226729756|sp|A9VN54|RSMA_BACWK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|163860246|gb|ABY41305.1| dimethyladenosine transferase [Bacillus weihenstephanensis KBAB4]
          Length = 292

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/291 (30%), Positives = 139/291 (47%), Gaps = 20/291 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M      +  K I+  Y    KK +GQNFL+D N+L +I + +        IEIG G G 
Sbjct: 1   MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNIS 116
           LT+ L    A+KV+  E DQ+  PIL +  + + N + +I  D LK D  +     F   
Sbjct: 61  LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEG 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             + ++ANLPY I T +LF  +             ++ QKEVG+R+ A+  +  YG LS+
Sbjct: 119 QDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSI 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              + T+   +  +   VF P P V S +I  +    P+    +     ++ + +F +RR
Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRR 235

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           KTL  +L              + +L + GI+   R E LSIE+F  ++N L
Sbjct: 236 KTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 286


>gi|77409014|ref|ZP_00785733.1| dimethyladenosine transferase [Streptococcus agalactiae COH1]
 gi|77172355|gb|EAO75505.1| dimethyladenosine transferase [Streptococcus agalactiae COH1]
          Length = 290

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K+ + + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G 
Sbjct: 1   MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D  ++  N ++++  D LK D     + F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A  N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMIQKEVADRISAMPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ AF  RR
Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSAILKMVCRDQPVVSVQDEDFFFRVSKVAFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|330686078|gb|EGG97700.1| dimethyladenosine transferase [Staphylococcus epidermidis VCU121]
          Length = 296

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 150/291 (51%), Gaps = 20/291 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+ KI ++S   +   +IE+G G G+LT+ L 
Sbjct: 9   PSRTRALLDQYGFDFKKSLGQNFLVDVNIINKIIDASDIDETTGIIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122
              A+KV+  E D +  P+LKD  + + N + II +D LK D      +       I ++
Sbjct: 69  KH-AKKVMSFEIDHRLIPVLKDTLAPYDN-VTIINEDILKADIATAVTEHLKDCDKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  +  YG LS++T + T
Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMQRSTPLVDIDDEEAFFKLAKAAFAQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            +    E         + L +A I+   R E LSI+DF ++   L +  ++
Sbjct: 244 YQNFFKEGKQHKESILSWLEKANIDPRRRGETLSIQDFAQLYKELNNFPEL 294


>gi|239825621|ref|YP_002948245.1| dimethyladenosine transferase [Geobacillus sp. WCH70]
 gi|259494250|sp|C5D363|RSMA_GEOSW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|239805914|gb|ACS22979.1| dimethyladenosine transferase [Geobacillus sp. WCH70]
          Length = 291

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 22/284 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL  Y    KK +GQNFL+D NIL+KI + +   D    IEIG G G LT+ L    
Sbjct: 11  TREILEKYGFSFKKSLGQNFLIDTNILRKIVDFAELSDETGAIEIGPGIGALTEQLARR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANL 125
           A+KV+  E DQ+  PIL+D  S + N + II  D LK D  +     F   + I ++ANL
Sbjct: 70  AKKVVAFEIDQRLLPILEDTLSPYGN-IRIIHQDVLKADIHRVISEEFTGMTDIMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++          + ++ QKEV +R+ A+  +  YG LS+   + T+A 
Sbjct: 129 PYYVTTPIIMKLLTDRLP---IRGMVVMLQKEVADRLAAKPGTKDYGSLSIAIQYYTEAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR----- 238
            +  +   VF P P V S VI  I    P     +     ++ + +F +RRKT+      
Sbjct: 186 TVMTVPRTVFIPQPNVDSAVIRLIKRKQPPVKVEDEAFFFQVVRASFAQRRKTILNNLVN 245

Query: 239 -----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                +++K    E +L +  I+   R E L++E+F  ++N L 
Sbjct: 246 NLPNGKAMKE-QIERVLTETDIDPRRRGETLTMEEFAALSNALQ 288


>gi|169825672|ref|YP_001695830.1| dimethyladenosine transferase [Lysinibacillus sphaericus C3-41]
 gi|226732594|sp|B1HS82|RSMA_LYSSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|168990160|gb|ACA37700.1| Dimethyladenosine transferase [Lysinibacillus sphaericus C3-41]
          Length = 293

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 138/283 (48%), Gaps = 20/283 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL  Y    KK +GQNFL+D NIL+ I   +   +    IE+G G G LT+ L    
Sbjct: 11  TQEILKKYGFSFKKSLGQNFLIDPNILRNIVSHAKLTENSGAIEVGPGIGALTEHLA-RS 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANL 125
           A+KV+  E DQ+  P+L+D  S + N + I+  D LK D  K      P    I ++ANL
Sbjct: 70  AKKVVSFEIDQRLLPVLEDTLSPY-NNVSIVHSDILKADVAKVIAEEMPGIEDIMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T +L   ++            ++ QKEV +RITA+  +  YG LS+   +  KA 
Sbjct: 129 PYYVTTPILMKLLNDRLP---IRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVKAD 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL-- 241
           +   +   VF P P V S VI  I H  P       + L  +T+ +F +RRKT+  +L  
Sbjct: 186 IAMTVPKTVFMPQPNVDSAVIRLIKHDEPPVKVINEDFLFVVTRASFVQRRKTIYNNLQA 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                  ++      L  A IE   R E L+I++F ++ + L 
Sbjct: 246 GLPNGKTQKDFILEALAAANIEPTRRGETLTIQEFGKLADALY 288


>gi|319891446|ref|YP_004148321.1| Dimethyladenosine transferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161142|gb|ADV04685.1| Dimethyladenosine transferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323465384|gb|ADX77537.1| dimethyladenosine transferase [Staphylococcus pseudintermedius
           ED99]
          Length = 296

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 20/293 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L+ Y    KK +GQNFL+D+NI+ +I ++SG      VIEIG G G+LT+ L 
Sbjct: 9   PSRTRALLNQYGFNFKKSLGQNFLIDVNIINRIIDASGIDHMTGVIEIGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRII 122
              A+ V+  E DQ+  P+L D  S + N + +I +D LK +  +           I ++
Sbjct: 69  K-NAQHVLAFEIDQRLIPVLDDTLSPY-NNVTVINEDILKANVAEAIQQHLSHCEKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L   +  D      +   ++ QKEVGER+ AQ  +  YG LS++  + T
Sbjct: 127 ANLPYYITTPILLTLLEQDLN---IDGYVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +   +PI       +  K+T+ AF +RRKT+  +
Sbjct: 184 ETSRVLTVPKTVFMPPPNVDSIVVKLMKRESPIVDVDNPNAFFKMTKGAFSQRRKTIYNN 243

Query: 241 LKRLG---------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284
            + L              L +A I+   R E LSI+++ R+   L +  ++++
Sbjct: 244 YQNLFENGKEQKETIMQWLERADIDPKRRGETLSIQEYARLYAELENFPNLSL 296


>gi|239637479|ref|ZP_04678453.1| dimethyladenosine transferase [Staphylococcus warneri L37603]
 gi|239596924|gb|EEQ79447.1| dimethyladenosine transferase [Staphylococcus warneri L37603]
          Length = 296

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 150/291 (51%), Gaps = 20/291 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+ KI ++S   +   +IE+G G G+LT+ L 
Sbjct: 9   PSRTRALLDQYGFDFKKSLGQNFLVDVNIINKIIDASDIDETTGIIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122
              A+KV+  E D +  P+LKD  + + N + II +D LK D      +       I ++
Sbjct: 69  KH-AKKVMSFEIDHRLIPVLKDTLAPYDN-VTIINEDILKADIATAVNEHLKDCDKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  +  YG LS++T + T
Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMQRSTPLVDIDDEEAFFKLAKAAFAQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            +    E         + L +A I+   R E LSI+DF ++   L +  ++
Sbjct: 244 YQNFFKEGKQHKESILSWLEKANIDPRRRGETLSIQDFAQLYKELNNFPEL 294


>gi|119504979|ref|ZP_01627056.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2080]
 gi|119459265|gb|EAW40363.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2080]
          Length = 279

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/260 (33%), Positives = 132/260 (50%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              P+K  GQNFL D  +++ IA +  +     ++EIG G G LT+ L+T G  ++  IE
Sbjct: 21  GHAPRKRFGQNFLQDDGVIQAIARAISAHKDDHIVEIGPGQGALTESLVTSGC-QLDAIE 79

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L    S HP R  +   DALK D++     S P+R++ NLPYNI T L+F  
Sbjct: 80  LDRDLTTGLLAAFSIHP-RFTLHTGDALKFDYKALRADSRPLRVVGNLPYNISTPLIFKL 138

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +           +  + Q+EV  R+ AQ  S  +GRL V+  +    + +FD+ P  FFP
Sbjct: 139 LENTA---IIGDMHFMLQREVVTRLAAQPGSKDWGRLGVMAQFYCDVSHLFDVPPEAFFP 195

Query: 198 SPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++  IPH  P    C +  L +  Q AF +RRKTLR + K +  +       +
Sbjct: 196 PPKVQSAIVRLIPHATPPYPDCDVVRLGRTVQMAFAQRRKTLRNNFKGVLNDEAFASVDV 255

Query: 256 ETNLRAENLSIEDFCRITNI 275
               RAE L +E F  ++ +
Sbjct: 256 TPTARAETLRLEQFVALSRL 275


>gi|70727517|ref|YP_254433.1| dimethyladenosine transferase [Staphylococcus haemolyticus
           JCSC1435]
 gi|119365848|sp|Q4L3F0|RSMA_STAHJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|68448243|dbj|BAE05827.1| ksgA [Staphylococcus haemolyticus JCSC1435]
          Length = 296

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 148/283 (52%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K +L  +    KK +GQNFL+D+NI+ KI ++S   D   +IE+G G G+LT+ L 
Sbjct: 9   PSRTKALLDQFGFNFKKSLGQNFLVDVNIIHKIIDASEIDDNTGIIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122
              A+KV+  E DQ+  P+LK+  + + N + II +D LK D  K    + N    I ++
Sbjct: 69  KR-AKKVMSFEIDQRLIPVLKETLAPYDN-VTIINEDILKADIGKAVKTYLNDCDKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ AQ  +  YG LS++T + T
Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAQVGTKAYGSLSIVTQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRETPLVSVDDEETFFKLAKAAFAQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L Q GI+   R E LSI+DF R+  
Sbjct: 244 YQNFFKDGKKHKESILKWLEQTGIDPKRRGETLSIQDFARLYE 286


>gi|73663572|ref|YP_302353.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|119365849|sp|Q49V02|RSMA_STAS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|72496087|dbj|BAE19408.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 296

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 146/291 (50%), Gaps = 20/291 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K +L+ Y    KK +GQNFL+D+NI+  I ++S   +   +IE+G G G+LT+ L 
Sbjct: 9   PTRTKALLNQYGFNFKKSLGQNFLIDVNIIHNIIDASDIDEQTGIIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122
              A+KV+  E DQ+  P+LKD    + N + +I +D LK D      +       I ++
Sbjct: 69  KS-AKKVMAFEIDQRLIPVLKDTMRPYDN-VTVINEDILKADIAHYITEHLTDCEKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +         +   ++ QKEVGER+ AQ  +  YG LS++  + T
Sbjct: 127 ANLPYYITTPILLNLMQQKLP---IDGYVVMMQKEVGERLNAQVGTKAYGSLSIVAQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    PI          K+T+ AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKSVFLPPPNVDSIVVKLMKRPTPIVDIDDENKFFKMTKAAFSQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            + L              L  AGI+   R E LSI++F  + N L +  ++
Sbjct: 244 YQSLFVNGKVNKEKILEWLEAAGIDPRRRGETLSIKEFANLYNELQNFTEL 294


>gi|28377358|ref|NP_784250.1| dimethyladenosine transferase [Lactobacillus plantarum WCFS1]
 gi|33516929|sp|Q88Z93|RSMA_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|28270190|emb|CAD63089.1| dimethyladenosine transferase (putative) [Lactobacillus plantarum
           WCFS1]
          Length = 296

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/291 (30%), Positives = 147/291 (50%), Gaps = 21/291 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           + + N + + + I+  Y +  KK +GQNFL D N+L  I  ++       VIEIG G G 
Sbjct: 6   LDIANPART-RAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGA 64

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A  V+  E D +  PIL +  + + N + ++  D LK D      +  +  
Sbjct: 65  LTEYLA-RAAHHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNE 122

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P++++ANLPY I T +L N ++ D     +E++ ++ QKEV +R+ A+  +  YG L++
Sbjct: 123 RPLKLVANLPYYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTI 179

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRR 234
              +R  A M   +   VF PSP V S ++     P    +P    +  K+ +  F  RR
Sbjct: 180 AVQYRMAAEMAMVVPRTVFVPSPNVDSAIVKLTALPLRTHVPFDEAAFFKVVKAGFAHRR 239

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           K L  +L+ L G+           L  A I+  +RAE L++++F  +T+ L
Sbjct: 240 KNLWNNLQSLFGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290


>gi|332072170|gb|EGI82656.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41301]
          Length = 290

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 149/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             I+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LSIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P     +     K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFIHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G+           L QAG+  ++R E LS+ +F  + + L 
Sbjct: 235 KTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALK 286


>gi|225026666|ref|ZP_03715858.1| hypothetical protein EUBHAL_00918 [Eubacterium hallii DSM 3353]
 gi|224956036|gb|EEG37245.1| hypothetical protein EUBHAL_00918 [Eubacterium hallii DSM 3353]
          Length = 293

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 149/288 (51%), Gaps = 19/288 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
            + N   ++  +L  Y    +K  GQNFL+D ++L KI  ++       V+EIG G G +
Sbjct: 10  NLGNPQETI-AVLQRYGFNFQKKYGQNFLIDTHVLDKIIGAAEIGKDDFVLEIGPGIGTM 68

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    AR+V+ +E D +  PIL+D   ++ N + ++ +D LKVD  K     N   P
Sbjct: 69  TQYLAE-AAREVVAVEIDTKLIPILEDTLKEYDN-VTVLNEDILKVDIRKIAEEKNGGKP 126

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     ++      +S+T++ QKEV +R+     +  YG LS+  
Sbjct: 127 IKVVANLPYYITTPIIMGLFESEVP---LDSITVMVQKEVADRMQVGPGTKDYGALSLAV 183

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKT 236
            +  +  ++ ++ P+ F P P V S VI    +   P+     +   KI + +F +RRKT
Sbjct: 184 QYYAEPYIVANVPPNCFIPRPAVGSAVIRLTRYQEKPVKVNDSAFMFKIIRASFNQRRKT 243

Query: 237 LRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L+  L         +      L + G+   +R E LS+E+F ++++IL
Sbjct: 244 LQNGLYNSSELRIPKEKTVAALEEMGLTPTIRGEKLSLEEFAKLSDIL 291


>gi|260582745|ref|ZP_05850532.1| dimethyladenosine transferase [Haemophilus influenzae NT127]
 gi|260094195|gb|EEW78096.1| dimethyladenosine transferase [Haemophilus influenzae NT127]
          Length = 287

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/273 (32%), Positives = 138/273 (50%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D ++++ I  +        ++EIG G G LT+ +  L    + 
Sbjct: 5   KHLGHTARKRFGQNFLHDTSVIQGIVAAIYPQPNQFLVEIGPGLGALTEPVGEL-VEHLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VVELDRDLAERLRHHPFLHQ-KLTVIETDAMQFDFDELYTTENLAEKGQKLRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYHD---VIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IP+   P P   L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPNKELPHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFS 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L   GI+ N RAENL+I D+  + N L DN
Sbjct: 240 PENLTALGIDLNARAENLAIADYAHLANWLADN 272


>gi|118475813|ref|YP_892964.1| dimethyladenosine transferase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196047365|ref|ZP_03114578.1| dimethyladenosine transferase [Bacillus cereus 03BB108]
 gi|225862093|ref|YP_002747471.1| dimethyladenosine transferase [Bacillus cereus 03BB102]
 gi|166221644|sp|A0R8B4|RSMA_BACAH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807859|sp|C1ESX0|RSMA_BACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118415038|gb|ABK83457.1| dimethyladenosine transferase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021767|gb|EDX60461.1| dimethyladenosine transferase [Bacillus cereus 03BB108]
 gi|225788520|gb|ACO28737.1| dimethyladenosine transferase [Bacillus cereus 03BB102]
          Length = 292

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/295 (29%), Positives = 141/295 (47%), Gaps = 20/295 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M      +  K I+  Y    KK +GQNFL+D N+L +I + +        IEIG G G 
Sbjct: 1   MKDIATPNRTKDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNIS 116
           LT+ L    A+KV+  E DQ+  PIL +  + + N + +I  D LK D  +     F   
Sbjct: 61  LTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEG 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             + ++ANLPY I T +LF  +             ++ QKEVG+R+ A+  +  YG LS+
Sbjct: 119 QDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSI 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
              + T+   +  +   VF P P V S +I  +    P+    +     ++ + +F +RR
Sbjct: 176 AIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDEIFFFEVVRASFAQRR 235

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           KTL  +L              + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 236 KTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 290


>gi|242241578|ref|ZP_04796023.1| dimethyladenosine transferase [Staphylococcus epidermidis W23144]
 gi|242234959|gb|EES37270.1| dimethyladenosine transferase [Staphylococcus epidermidis W23144]
 gi|319399650|gb|EFV87904.1| dimethyladenosine transferase [Staphylococcus epidermidis FRI909]
          Length = 296

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+ KI E+S       VIE+G G G+LT+ L 
Sbjct: 9   PSRTRALLDQYGFNFKKSLGQNFLIDVNIINKIIEASHIDCATGVIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122
              A+KV+  E DQ+  P+LKD  S + N + II +D LK D  K           I ++
Sbjct: 69  K-NAKKVMAFEIDQRLIPVLKDTLSPYDN-VTIINEDILKADIAKAVATHLQDCDKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A   +  YG LS++  + T
Sbjct: 127 ANLPYYITTPILLNLMQQDVP---IDGFVVMMQKEVGERLNAHVGTKAYGSLSIVAQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEAFFKLAKAAFAQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L  AGI+   R E L+I+DF  +  
Sbjct: 244 YQNFFKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATLYE 286


>gi|167748007|ref|ZP_02420134.1| hypothetical protein ANACAC_02744 [Anaerostipes caccae DSM 14662]
 gi|167652584|gb|EDR96713.1| hypothetical protein ANACAC_02744 [Anaerostipes caccae DSM 14662]
          Length = 286

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/290 (31%), Positives = 150/290 (51%), Gaps = 18/290 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +       I+  Y    +K  GQNFL+D ++L+KI +++   +   V+EIG G G 
Sbjct: 1   MEKLSSPKKTIEIIQKYNFDFQKKFGQNFLIDSHVLEKIIDAANITEDDFVLEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           +TQ L    AR+V+ +E D    PILK+  + + N +E++ +D LKVD  K     N   
Sbjct: 61  MTQYLSEH-AREVMAVEIDHNLIPILKETLAGYDN-VEVLNEDILKVDIGKIAEKKNQGR 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T ++      +       SLT++ QKEV +R+ A   +  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPIIMGLFEKNVP---MNSLTVMVQKEVAQRMQAGPGTKDYGALSLA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRK 235
             +  +  ++ ++ P+ F P PKV S VI    + + P+    E L   I + +F +RRK
Sbjct: 176 VQFYAEPYIVANVPPNCFMPRPKVGSAVIRLTRYKDMPVKVKNEQLMFSIIRASFNQRRK 235

Query: 236 TLRQS--------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           TL+            +    + L + G+   +R E LS+E F R++++L 
Sbjct: 236 TLQNGINNSSTLHFSKEQVVDALDKMGLSPKIRGEALSLEQFARLSDLLE 285


>gi|300853385|ref|YP_003778369.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528]
 gi|300433500|gb|ADK13267.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528]
          Length = 280

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 14/283 (4%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+ S +   ++  Y     K +GQNFL+D  +L  I  S+       +IEIG G G LT
Sbjct: 1   MNDLSTA--DVVKKYGFKFSKSLGQNFLIDNTVLDDIVNSADISKEDFIIEIGPGVGTLT 58

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A KV  IE D    PILK+      N  E+I  DALK+DF K  +    ++I+
Sbjct: 59  RELLK-KAGKVCAIELDSDLIPILKEELKDFKN-FELIHKDALKIDFNKIIDDEKNVKIV 116

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   ++ +     +++LT++ QKEVGERI+++ N   YG LS+L  +  
Sbjct: 117 ANLPYYVTTPIITRLLNENYN---FKTLTIMIQKEVGERISSEPNCKQYGALSILVQYYC 173

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
              ++  +SP  F P PKV S VI       P       +   K+ + +F  RRKTL  +
Sbjct: 174 DVEVIRKVSPLSFIPRPKVESIVIKLTKLDEPRVKVKDKKLFFKVVRCSFNMRRKTLWNA 233

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +K L       E    +A I+   R E LSIE+F R+++ + D
Sbjct: 234 VKTLKVPKEDMEAAFKKAEIDEKRRGETLSIEEFGRLSDCIYD 276


>gi|296875726|ref|ZP_06899791.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
           15912]
 gi|296433296|gb|EFH19078.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
           15912]
          Length = 291

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLNQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +    +++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREKPAVTVKDEDFFFSVSKASFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  +  AG++ ++R E LS+EDF R+ + L +
Sbjct: 235 KTLWNNLTSRFGKTEEIKAKLEAGIQAAGLQPSVRGEALSLEDFARLADGLLE 287


>gi|292670425|ref|ZP_06603851.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541]
 gi|292647835|gb|EFF65807.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541]
          Length = 292

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 14/278 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL+ +++   K +GQNFL+D+ +++ I E++    G TV+EIG G G LTQ L   G
Sbjct: 14  TRHILNAFRLRASKRLGQNFLIDVGVVRGIVEAAELAPGDTVLEIGPGIGTLTQGLAETG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPY 127
           AR V+ +E D++   +L +    + N + I+  D LK++  +          ++ ANLPY
Sbjct: 74  AR-VVAVEIDKKLPRVLAETLKGYDN-VTIVPGDILKLNIPEILGLKEGERFKVAANLPY 131

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++   +         E L  + QKEV  R+TA+  S  YG LS+   + T+  ++
Sbjct: 132 YITTPIIMTLLEQRLP---IERLVTMVQKEVAVRMTARPGSKDYGALSIAVQYFTEPRIV 188

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P+P+VTS V+       P   P   +   ++ + AFG+RRK L  +L   G
Sbjct: 189 MDVPPRAFMPAPEVTSAVVACRVRETPAAAPADEKLFFRLIRAAFGQRRKMLLNALTGAG 248

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                    L  AGI  N R E LS+ DF R+++ + D
Sbjct: 249 LTKEMSRAGLSAAGIAENTRGEQLSLADFARLSDAVGD 286


>gi|251794062|ref|YP_003008793.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2]
 gi|247541688|gb|ACS98706.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2]
          Length = 298

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 18/283 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K I++ Y    KK +GQNFL+D NIL KI  ++G       +EIG G G LTQ L 
Sbjct: 14  PKRTKEIIAKYGFSFKKSLGQNFLIDQNILHKIVSAAGLDKTKGALEIGPGIGALTQHLA 73

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122
              A  V  IE D +  PIL DI +     ++++  D LK+D +K F       + + ++
Sbjct: 74  A-AAGTVTAIEIDNRLIPILGDILAG-EEHVKVVHGDVLKLDLKKLFEERFADVAGVSVV 131

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +L   +         E++ ++ QKEV ER+ A+     YG LSV   +  
Sbjct: 132 ANLPYYVTTPILMKLLEERLP---LENIVVMIQKEVAERMAAKPGGKEYGSLSVAVQYYC 188

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240
           +  ++  +   VF P P V S VI       P     +     +I Q +F +RRKTL  +
Sbjct: 189 EPQLVCIVPHTVFIPQPNVDSAVIKLAVREKPPVEVEDEAHFFRIVQASFAQRRKTLANN 248

Query: 241 LKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           L    G+        LL    I+   R E LS+++F RI+   
Sbjct: 249 LTAFVGKERREEMTQLLISCEIDPVRRGETLSLDEFARISRAF 291


>gi|221135222|ref|ZP_03561525.1| dimethyladenosine transferase [Glaciecola sp. HTCC2999]
          Length = 267

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  ++ +I  +    +   ++EIG G G LT+ +  +    + V
Sbjct: 5   HLGHKARKRFGQNFLNDDYVIDQIVSAIAPNNDDIMVEIGPGLGALTEPVCDV-VEHLNV 63

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L++      ++L +I+ DAL+ DF +      P+++  NLPYNI T L+F
Sbjct: 64  VELDRDLAKRLREH-PFMSSKLNVIEADALQFDFTELAKQG-PLKVFGNLPYNISTPLMF 121

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     T+    + +  + QKEV  R+ A+    +YGRLSV+  +      + ++ P  F
Sbjct: 122 HLF---TFTNQIKDMHFMLQKEVVNRLAARPGHKNYGRLSVMAQYYCTVVPVIEVPPEAF 178

Query: 196 FPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  IPH  P      L++L+K+T  AF +RRKT+R SLK +   ++L   
Sbjct: 179 TPPPKVDSAVVRLIPHQTPPVEVNELKALEKVTALAFNQRRKTIRNSLKSVIDADVLTSI 238

Query: 254 GIETNLRAENLSIEDFCRITN 274
           GI+   RAE LS+  F  I N
Sbjct: 239 GIDPVWRAEGLSLAQFALIAN 259


>gi|225869784|ref|YP_002745731.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047]
 gi|254807885|sp|C0M8P2|RSMA_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225699188|emb|CAW92442.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047]
          Length = 290

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 152/292 (52%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K+IL  Y    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KSILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116
           LT+ L    A +V+  E D++  PIL D      N ++++  D LK D +    +F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDERLVPILADTLRDFDN-VQVVNQDILKADLQTQLKQFSNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      +   ++++  F  RR
Sbjct: 175 AVQYYMTAKIAFVVPRTVFVPAPNVDSAILKMTRRDQPLIEVQDEDFFFRVSRVGFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G         E  L  AGI+ ++R E LSI+DF R+ + L 
Sbjct: 235 KTLWNNLVSHFGKAEDTKARLEQGLALAGIKPSIRGEALSIQDFGRLADALK 286


>gi|116628487|ref|YP_821106.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9]
 gi|122266918|sp|Q03IR2|RSMA_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116101764|gb|ABJ66910.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9]
          Length = 290

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 152/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI  ++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEINKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116
           LT+ L    A +V+  E D++  PIL+D    H N +++I +D LK D +    +F N  
Sbjct: 60  LTEFLAE-NASEVMAFEIDERLVPILEDTLRDHDN-VKVINEDVLKADLQTRVKEFENPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +     + F +   VF P+P V S ++       P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTTKVAFAVPRTVFVPAPNVDSAILKMTRRKQPLVEVKDEDFFFRVSKASFLHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L  A I+ ++R E LSI DF R+++ L +
Sbjct: 235 KTLWNNLTSHFGKSEEVKNKLDQALENAAIKPSIRGEALSISDFARLSDALRE 287


>gi|117925614|ref|YP_866231.1| dimethyladenosine transferase [Magnetococcus sp. MC-1]
 gi|171460784|sp|A0LA32|RSMA_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|117609370|gb|ABK44825.1| dimethyladenosine transferase [Magnetococcus sp. MC-1]
          Length = 279

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 95/271 (35%), Positives = 148/271 (54%), Gaps = 10/271 (3%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K +L  + + P K  GQNFL+D ++  +I   +G   G  V+EIG G G+LT  LL   
Sbjct: 7   IKLLLEQHGLSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLL-QK 65

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYN 128
           A  V  +EKD++  P+L+ + +     L ++++DAL VD+      +  P+++ ANLPYN
Sbjct: 66  AGAVTAVEKDRKLLPLLR-VEAAGVGALTLVEEDALLVDYTALAQQLGGPLKLAANLPYN 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+ + +        +E + L+FQKEV +R+ A+  S  YG L+V      +    F
Sbjct: 125 ISTPLMVHLLDHHAA---FECMALMFQKEVAQRLAAEPGSKAYGALTVQCALWAEIRHGF 181

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           D+ P  F P+PKVTS V+H      P           ++ + AF +RRKTLR +LK +  
Sbjct: 182 DVPPAAFLPAPKVTSAVVHVQMMRQPRVAVEDERHFVRVVKAAFAQRRKTLRNTLKTICP 241

Query: 247 E--NLLHQAGIETNLRAENLSIEDFCRITNI 275
           +    L QAGI+  LRAE L++  F ++ N 
Sbjct: 242 DPNRWLEQAGIDGALRAEVLTLAQFAQLANT 272


>gi|163791033|ref|ZP_02185454.1| dimethyladenosine transferase [Carnobacterium sp. AT7]
 gi|159873678|gb|EDP67761.1| dimethyladenosine transferase [Carnobacterium sp. AT7]
          Length = 297

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/296 (31%), Positives = 144/296 (48%), Gaps = 25/296 (8%)

Query: 3   MNNK-----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M N+         K I+  Y    KK +GQNF++D NIL  I  +S       VIE+G G
Sbjct: 1   MTNRKDIATPSRTKEIMEKYGFSVKKSLGQNFIVDPNILSNIVAASDIDKNTNVIEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFF 113
            G LT+ L    +++VI  E D +  P+L D  S + N + ++  D LKV+      +  
Sbjct: 61  IGALTEHLA-RASKEVIAFEIDNRLLPVLADTLSPYDN-ISVVHSDVLKVNLQESLPEMI 118

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
           ++  P+ ++ANLPY I T ++ +++     P   + LT++ QKEV ERITA   S  YG 
Sbjct: 119 DLDEPLVVVANLPYYITTPIIMHFLET---PVRIDGLTIMMQKEVAERITAAPGSKAYGS 175

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFG 231
           LS+   +  +A + F +   VF P P V S +I       P       +S   + + AF 
Sbjct: 176 LSIAIQYYMEAEVAFIVPKTVFIPQPNVDSAIIKLTRRATPSVTVNNEKSFFALVRSAFV 235

Query: 232 KRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +RRKTL  +L    G+           L  A I+   R E LS+ +F  +++ + +
Sbjct: 236 QRRKTLWNNLLIRYGKEDETREKLIQALEAANIDPKRRGETLSLAEFALLSDAIDE 291


>gi|320547549|ref|ZP_08041834.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812]
 gi|320447624|gb|EFW88382.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812]
          Length = 290

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 20/284 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    
Sbjct: 9   TRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFLAENA 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A +V+  E D +  PIL D      N +++I +D LK D     ++F N   PI+++ANL
Sbjct: 69  A-EVMAFEIDDRLIPILADTLRDFDN-VKVINEDILKSDLQSRIKEFANPDLPIKVVANL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L + I +      +    ++ QKEV +RI+A+ N+  YG LS+   +   A 
Sbjct: 127 PYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAEPNTKAYGSLSIAVQYYMTAK 183

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243
           + F +   VF P+P V S ++       P+      +   ++ + +F  RRKTL  +L  
Sbjct: 184 VAFIVPRTVFVPAPNVDSAILKMTRREEPLVKVKDEDFFFRVAKISFVHRRKTLWNNLIS 243

Query: 244 LGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             G         E  L  A I+ ++R E LSI DF ++ + L +
Sbjct: 244 HFGKAEETKAKLEKALEIAEIKPSIRGEALSIADFAKLADALKE 287


>gi|81429267|ref|YP_396268.1| dimethyladenosine transferase [Lactobacillus sakei subsp. sakei
           23K]
 gi|119365029|sp|Q38V22|RSMA_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78610910|emb|CAI55962.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N,
           N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 297

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 145/294 (49%), Gaps = 20/294 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M         K IL  Y    KK +GQNFL ++ ILK+I E+        VIEIG G G+
Sbjct: 1   MEDIANPERTKKILKRYGFKFKKSLGQNFLTNITILKQIVEAGEITKDDDVIEIGPGIGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116
           LT+ +    A +V+  E D +  P+LKD  + + N + ++  D L+ D      K F+  
Sbjct: 61  LTEQIA-RKAHQVLSFEIDDRLIPVLKDTLNHYHN-VTVLNQDILEADLPTLIAKHFDGQ 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             ++I+ANLPY I T ++ + + A       + + L+ QKEV ERI A   S  YG LS+
Sbjct: 119 HNLKIVANLPYYITTPIMLHLLEAGLP---IDRMVLMMQKEVAERIDAAPGSKAYGSLSI 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
                ++  + F +    F P P V S ++ F+    P+      +   ++ + AF +RR
Sbjct: 176 AVQLHSEVKLAFIVPKTAFVPQPNVDSAIVEFVGRQEPLVTVQNQQLFDQLVRGAFAQRR 235

Query: 235 KTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KTL  +L+   G+           L QA I  + RAE LSI+ F ++++ L + 
Sbjct: 236 KTLWNNLQNQFGKQEEVKAGLVAALDQADIAPSTRAEQLSIQQFAQLSDCLNEQ 289


>gi|160894460|ref|ZP_02075236.1| hypothetical protein CLOL250_02012 [Clostridium sp. L2-50]
 gi|156863771|gb|EDO57202.1| hypothetical protein CLOL250_02012 [Clostridium sp. L2-50]
          Length = 287

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 151/289 (52%), Gaps = 19/289 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           ++N   +++TI   Y+   +K  GQNFL+D +++ KI  ++       V+EIG G G +T
Sbjct: 4   LSNPQVTIQTI-KKYEFAFQKKFGQNFLIDDHVITKIINAAEITKDDLVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    A KVI +E D+   PIL +  +++ N + II +D LK+D  +     N   PI
Sbjct: 63  QYLAES-AGKVIAVEIDKNLIPILGETLAEYDN-VTIINEDILKLDINRLVEEENDGKPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     +       +S+T++ QKEV +R+     S  YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFESHVP---LQSITVMVQKEVADRMQVGPGSKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTL 237
           +  K  +  ++ P+ F P P V S VI    +  P     +   + K+ + +F +RRKTL
Sbjct: 178 YYAKPYIAANVPPNCFIPRPGVGSAVIRLTRYEEPPVMVKDESLMFKLIRASFNQRRKTL 237

Query: 238 RQS--------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +            +   E  L + G+  N+R E+L++ +F ++++ +++
Sbjct: 238 QNGIANSPELPYSKAQVEKALEKMGLAANVRGESLTLAEFAKLSDTISE 286


>gi|332994415|gb|AEF04470.1| dimethyladenosine transferase [Alteromonas sp. SN2]
          Length = 275

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/268 (32%), Positives = 136/268 (50%), Gaps = 11/268 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  ++ +I  +        ++EIG G G LT  +       + V
Sbjct: 5   HLGHTARKRFGQNFLHDDYVIGQIVSAINPQHEQNLVEIGPGLGALTDPVCDE-VEALTV 63

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGT 131
           IE D+     L++    + ++L +I+ DA+ +DF +           +R+  NLPYNI T
Sbjct: 64  IELDRDLAKRLREH-PFNGDKLTVIEQDAMTMDFTELAKTMPVKDKGLRVFGNLPYNIST 122

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L+F+  S        + +  + QKEV  R+ A   S  YGRLSV+  +  K   + ++ 
Sbjct: 123 PLMFHLFSHAAC---VDDMHFMLQKEVVNRLAAGHGSKSYGRLSVMAQYYCKVMPVLNVP 179

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           P  F P PKV S V+  IPH  P      + +L+++  +AF +RRKT+R SLK    E  
Sbjct: 180 PGAFKPPPKVDSAVVRLIPHKTPPVDVVSVATLERVCAQAFNQRRKTIRNSLKESLTETQ 239

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           + + GI   +RAE LS++DF  I N ++
Sbjct: 240 ISELGINPTVRAEVLSLQDFATIANAVS 267


>gi|76787342|ref|YP_330398.1| dimethyladenosine transferase [Streptococcus agalactiae A909]
 gi|77406268|ref|ZP_00783335.1| dimethyladenosine transferase [Streptococcus agalactiae H36B]
 gi|119365850|sp|Q3JZA5|RSMA_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|76562399|gb|ABA44983.1| dimethyladenosine transferase [Streptococcus agalactiae A909]
 gi|77175121|gb|EAO77923.1| dimethyladenosine transferase [Streptococcus agalactiae H36B]
          Length = 290

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K+ + + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G 
Sbjct: 1   MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D  ++  N ++++  D LK D     + F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A  N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAMPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ AF  RR
Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSVILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|188588306|ref|YP_001919554.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498587|gb|ACD51723.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 283

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 95/276 (34%), Positives = 140/276 (50%), Gaps = 12/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K ++  Y     K +GQNFLLD ++L  I   +   +   +IEIG G G LT  LL   
Sbjct: 8   TKELVKKYNFRFSKSLGQNFLLDESVLNDIVCGAEVNENDFIIEIGPGVGTLTAKLL-QK 66

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V  IE D    PIL+    ++ ++ E+I +DALKVDF +       ++++ANLPY +
Sbjct: 67  AKRVTCIELDNDLIPILQQELGEY-DKFELIHNDALKVDFNEIMKNEEHVKLVANLPYYV 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   +  +     +ESLT++ QKEV ERI A+ N   YG LSVL  +     ++  
Sbjct: 126 TTPIIVKLLKEN---HKFESLTIMIQKEVAERINAEPNCKEYGALSVLVQYYCNTKIVRK 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS-----LK 242
           +SP  F P PKV S VI      NP       + L  I +  F  RRKTL  +     L 
Sbjct: 183 VSPESFMPRPKVDSIVIRLDRLSNPRVKVQDEKLLFDIVRAGFNMRRKTLWNATKVVGLS 242

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +   +       I+   RAE LSIE+F  + + + D
Sbjct: 243 KEDLQKAFDSCNIDPKRRAETLSIEEFAVLADSIHD 278


>gi|87119768|ref|ZP_01075665.1| rRNA (adenine-N6,N6)-dimethyltransferase [Marinomonas sp. MED121]
 gi|86165244|gb|EAQ66512.1| rRNA (adenine-N6,N6)-dimethyltransferase [Marinomonas sp. MED121]
          Length = 270

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 140/267 (52%), Gaps = 9/267 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  +++ I        G  ++EIG G G LTQ ++      + V+E 
Sbjct: 7   HKARKRFGQNFLHDHGVIRNIVACIAPKKGQRIVEIGPGKGALTQGIIA-ATESMDVVEL 65

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   PILK    ++P  L I + DA+K DF +     + IR++ NLPYNI T L+F+ +
Sbjct: 66  DRDLIPILKVNLFRYPE-LRIHEADAMKFDFSQLATEGN-IRVVGNLPYNISTPLIFHLL 123

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S        +++  + QKEV +R+ A+     YGRLSV+  +  +   +F + P  F P+
Sbjct: 124 SQAN---IIDNMHFMLQKEVVDRLAARPGDNLYGRLSVMAQYYCQVESLFVVGPESFDPA 180

Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S ++   P+         LE+L++  +  F +RRKTLR + K +   +      I+
Sbjct: 181 PKVDSAIVRMTPYQEKPYLADSLETLERAVRLGFQQRRKTLRNNYKGILNNDDFDALDID 240

Query: 257 TNLRAENLSIEDFCRITNILTDNQDIA 283
             LR E L + DF +I N L DN++ +
Sbjct: 241 PGLRPERLDVPDFVKIANYL-DNKEAS 266


>gi|254555556|ref|YP_003061973.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1]
 gi|300767100|ref|ZP_07077013.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|254044483|gb|ACT61276.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1]
 gi|300495638|gb|EFK30793.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 296

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 88/291 (30%), Positives = 147/291 (50%), Gaps = 21/291 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           + + N + + + I+  Y +  KK +GQNFL D N+L  I  ++       VIEIG G G 
Sbjct: 6   LDIANPART-RAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGA 64

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A  V+  E D +  PIL +  + + N + ++  D LK D      +  +  
Sbjct: 65  LTEYLA-RAAHHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNE 122

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P++++ANLPY I T +L N ++ D     +E++ ++ QKEV +R+ A+  +  YG L++
Sbjct: 123 RPLKLVANLPYYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTI 179

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRR 234
              +R  A M   +   VF PSP V S ++     P    +P    +  K+ +  F  RR
Sbjct: 180 AVQYRMAAEMAMVVPRTVFVPSPNVDSAIVKLTALPPRTHVPFDEAAFFKVVKAGFAHRR 239

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           K L  +L+ L G+           L  A I+  +RAE L++++F  +T+ L
Sbjct: 240 KNLWNNLQSLFGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290


>gi|195977405|ref|YP_002122649.1| dimethyladenosine transferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225869264|ref|YP_002745212.1| dimethyladenosine transferase [Streptococcus equi subsp.
           zooepidemicus]
 gi|226732627|sp|B4U0U9|RSMA_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|259494258|sp|C0MF36|RSMA_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|195974110|gb|ACG61636.1| dimethyladenosine transferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225702540|emb|CAX00496.1| dimethyladenosine transferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 290

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 151/292 (51%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K IL  Y    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNIS 116
           LT+ L    A +V+  E D++  PIL D      N ++++  D LK D +    +F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDERLVPILADTLRDFDN-VQVVNQDILKADLQTQLKQFSNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++       P+      +   ++++  F  RR
Sbjct: 175 AVQYYMTAKIAFVVPRTVFVPAPNVDSAILKMTRRDQPLIEVQDEDFFFRVSRVGFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KTL  +L    G         E  L  AGI+ ++R E LSI+DF R+ + L 
Sbjct: 235 KTLWNNLVSHFGKAEDTKARLEQGLALAGIKPSIRGEALSIQDFGRLADALK 286


>gi|260767123|ref|ZP_05876068.1| dimethyladenosine transferase [Vibrio furnissii CIP 102972]
 gi|260617878|gb|EEX43052.1| dimethyladenosine transferase [Vibrio furnissii CIP 102972]
 gi|315181266|gb|ADT88180.1| dimethyladenosine transferase [Vibrio furnissii NCTC 11218]
          Length = 271

 Score =  285 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/267 (32%), Positives = 137/267 (51%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPQPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF +    ++ +RI  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   S  YGRL+V+T +  K   + ++ P  F
Sbjct: 124 HLFEFHK---DIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMTQYYCKVVPVLEVPPTAF 180

Query: 196 FPSPKVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P PKV S V+  +P+ + P P   L+ L ++ +E F +RRKT+R   K L    +L + 
Sbjct: 181 VPPPKVDSAVVRLVPYEDLPHPTTSLKWLDRVVREGFNQRRKTVRNCYKGLLELEVLEEL 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           G+   +R ENL+++ F  + N L  N 
Sbjct: 241 GVNPGMRPENLTLQQFVAMANWLDANH 267


>gi|110834909|ref|YP_693768.1| ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2]
 gi|122064277|sp|Q0VMV2|RSMA_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|110648020|emb|CAL17496.1| Ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2]
          Length = 280

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 91/259 (35%), Positives = 136/259 (52%), Gaps = 8/259 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQ+FL D N++ ++  + G   G T++EIG G G LT  LL      + V+E 
Sbjct: 4   HRTRKRFGQHFLHDRNLVDRMIRTLGLQTGDTLVEIGPGRGALTYPLLEELPH-LHVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+    +L+      P RL I + DAL+ DF        P+R+I NLPYNI T L+F+ +
Sbjct: 63  DRDLIALLRQ--ENTPERLTIHESDALRFDFRTLKPADKPLRVIGNLPYNISTPLIFHLL 120

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +          +T + QKEV ER+TA   +  +GRLS++  +  +A  +F + P  F P 
Sbjct: 121 AQADA---ISDMTFMLQKEVVERLTASPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSPP 177

Query: 199 PKVTSTVIHFIPH-LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P+V S V+  IPH   P P   E  L+K+  +AF +RRK +R  LK           GI+
Sbjct: 178 PRVDSAVVRLIPHDSPPHPADDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFQAVGID 237

Query: 257 TNLRAENLSIEDFCRITNI 275
             LR + LS+ D+  + NI
Sbjct: 238 AGLRPDQLSVADYVALANI 256


>gi|34495576|ref|NP_899791.1| dimethyladenosine transferase [Chromobacterium violaceum ATCC
           12472]
 gi|88911348|sp|Q7P1U1|RSMA_CHRVO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|34101431|gb|AAQ57800.1| dimethyladenosine transferase [Chromobacterium violaceum ATCC
           12472]
          Length = 262

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 98/265 (36%), Positives = 142/265 (53%), Gaps = 12/265 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D +++  I  +        VIEIG G G +T+ LL    + + V+E
Sbjct: 3   KHIPRKRFGQNFLQDASVIAGIVHAVNPQPDDIVIEIGPGLGAITKPLLARL-KHLHVVE 61

Query: 78  KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D+     LK   ++HP ++L I   DAL  DF       +P++I+ NLPYNI T LLF+
Sbjct: 62  IDRDIIERLK---AEHPADKLTIHAGDALAFDFASV--SEAPLKIVGNLPYNISTPLLFH 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                ++      +  + QKEV ER+ A+ ++  YGRL+V+  +R     +  + P  F+
Sbjct: 117 L---ASYGNRVTDMHFMLQKEVIERMVAEPSTADYGRLTVMLQYRFYMENILFVPPEAFW 173

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S V+  IP         +   L+K+  +AF +RRKTLR +LK L     L   G
Sbjct: 174 PPPKVDSAVVRMIPAPGRCGTARDEALLEKLVSQAFAQRRKTLRNNLKGLADAADLEALG 233

Query: 255 IETNLRAENLSIEDFCRITNILTDN 279
           I+  LR ENL +EDF R+ N L D 
Sbjct: 234 IDPGLRPENLPVEDFVRLANHLHDK 258


>gi|223934090|ref|ZP_03626038.1| dimethyladenosine transferase [Streptococcus suis 89/1591]
 gi|223897236|gb|EEF63649.1| dimethyladenosine transferase [Streptococcus suis 89/1591]
          Length = 290

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K +  + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADK-NVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D   +  N + ++  D LK D     + F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L  A +E ++R E LS+ DF R+++ L +
Sbjct: 235 KTLWNNLTNHFGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287


>gi|317473695|ref|ZP_07932982.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA]
 gi|316898816|gb|EFV20843.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA]
          Length = 286

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 91/290 (31%), Positives = 150/290 (51%), Gaps = 18/290 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +       I+  Y    +K  GQNFL+D ++L+KI +++       V+EIG G G 
Sbjct: 1   MEKLSSPKKTIEIIQKYNFDFQKKFGQNFLIDSHVLEKIIDAANITKDDFVLEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           +TQ L    AR+V+ +E D    PILK+  + + N +E++ +D LKVD  K     N   
Sbjct: 61  MTQYLSEH-AREVMAVEIDHNLIPILKETLAGYDN-VEVLNEDILKVDIGKIAEKKNQGR 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T ++      +      +SLT++ QKEV +R+ A   +  YG LS+ 
Sbjct: 119 PIKVVANLPYYITTPIIMGLFEKNVP---MDSLTVMVQKEVAQRMQAGPGTKDYGALSLA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRK 235
             +  +  ++ ++ P+ F P PKV S VI    + + P+    E L   I + +F +RRK
Sbjct: 176 VQFYAEPYIVANVPPNCFMPRPKVGSAVICLTRYKDMPVKVKNEQLMFSIIRASFNQRRK 235

Query: 236 TLRQS--------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           TL+            +    + L + G+   +R E LS+E F R++++L 
Sbjct: 236 TLQNGINNSSTLHFSKEQVVDALDKMGLSPKIRGEALSLEQFARLSDLLE 285


>gi|158321677|ref|YP_001514184.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs]
 gi|166987688|sp|A8MK56|RSMA_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|158141876|gb|ABW20188.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs]
          Length = 287

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 94/289 (32%), Positives = 147/289 (50%), Gaps = 17/289 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +     K I+  Y+    K +GQNFL+D NIL  I + +   +G  +IE+G G G+
Sbjct: 1   MDRISSPKKTKEIVQKYEFKFSKSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118
           LTQ +    A  V+ +E D+   PILK+    +PN +E+I +D LK+D  K      P  
Sbjct: 61  LTQNIAER-ADSVLAVEIDKTLIPILKETLGAYPN-VEVINEDVLKLDLHKLIEEKFPGR 118

Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            +++IANLPY + T ++  ++         +SLT++ QKEV +R+ A   +  YG LS+ 
Sbjct: 119 NVKVIANLPYYVTTPIIMKFLEEKVP---VKSLTIMIQKEVADRMQAGPGTKDYGALSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             + +   ++  + P VF P PKV STVI       P            + ++AFGKRRK
Sbjct: 176 VQYYSNPKILLKVPPSVFIPQPKVESTVIRLDILDTPKVSVEREDLFFSLVKDAFGKRRK 235

Query: 236 TLRQSLK-------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           TL  +L        +     +L  + I+ N R E L+IE++  + N L 
Sbjct: 236 TLLNALSTGDLKLEKSLLREVLAASNIDENRRGETLTIEEYGVLANNLA 284


>gi|119470580|ref|ZP_01613283.1| dimethyladenosine transferase [Alteromonadales bacterium TW-7]
 gi|119446281|gb|EAW27558.1| dimethyladenosine transferase [Alteromonadales bacterium TW-7]
          Length = 268

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 133/267 (49%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+ KI  +        ++EIG G G +T+ +  L    + V
Sbjct: 6   HLGHRARKRFGQNFLFDEMIIDKIVSAIDPKPEDNLVEIGPGLGAITEPVAELSGH-LTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L +     P +L + Q DA+K DF         +++  NLPYNI T LLF
Sbjct: 65  VELDKDLAKRLIEHPFLGP-KLTVNQGDAMKYDFASLVKDDKKLKVFGNLPYNISTPLLF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E +  + QKEV +R+ A   S  +GRLSV+T +   A  + ++ P  F
Sbjct: 124 HLFE---FADNIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVIEVPPECF 180

Query: 196 FPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S VI  IP          ++ L  +  EAF +RRKTLR SL  L     +   
Sbjct: 181 KPAPKVDSAVIRLIPKKPEQRTAKSVKILNTVCLEAFNQRRKTLRNSLGNLLTAEEMASI 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           G++  LRAE+LS++ F  I N + D +
Sbjct: 241 GVDATLRAESLSLQQFIDIANWIYDKE 267


>gi|227891849|ref|ZP_04009654.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741]
 gi|227866312|gb|EEJ73733.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741]
          Length = 296

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 94/290 (32%), Positives = 150/290 (51%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N + + + I+  Y +  KK +GQNFL D+NILK I  ++   +   VIEIG G G LT
Sbjct: 8   IANPTRT-RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALT 66

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118
           + L    A KV+ +E D +  P+L D  S + N +E+I  D LK D E      F     
Sbjct: 67  EQLAKR-ANKVMALEIDDRLLPVLADTLSPYEN-VEVIHQDILKADLEALIAEHFEPGHK 124

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPY I T +L + + +      +E++ ++ QKEV ER+ A   +  YG LSV  
Sbjct: 125 LKLVANLPYYITTPILMHLLDSGI---EFETIVVMMQKEVAERLAANPGTKAYGSLSVAV 181

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKT 236
            +   + + F +   VF P P V S +I           P   +  KK+ + +F  RRK+
Sbjct: 182 QYEMDSEIAFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKS 241

Query: 237 LRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277
           L  +L+ L G++          L  A I+ ++RAE L++ DF  +++ L 
Sbjct: 242 LWNNLQSLYGKDSETKEKMLQALEVADIKQSIRAEKLTVADFINLSDALE 291


>gi|168205777|ref|ZP_02631782.1| dimethyladenosine transferase [Clostridium perfringens E str.
           JGS1987]
 gi|168209755|ref|ZP_02635380.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC
           3626]
 gi|168217634|ref|ZP_02643259.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239]
 gi|170662648|gb|EDT15331.1| dimethyladenosine transferase [Clostridium perfringens E str.
           JGS1987]
 gi|170712059|gb|EDT24241.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC
           3626]
 gi|182380335|gb|EDT77814.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239]
          Length = 285

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 142/284 (50%), Gaps = 13/284 (4%)

Query: 1   MTMNN-KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N  K    K ++  Y     K +GQNFL+D ++ + I   +   +   VIEIG G G
Sbjct: 1   MDINEIKDIKTKELVQKYNFRFSKSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            LT  LL   A++V+ IE D    PIL      +P + ++I +DALKVDF +       +
Sbjct: 61  TLTVQLLKR-AKRVVAIELDSSLIPILTAELGDNP-KFQLIHNDALKVDFNEIIGAEKSV 118

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY + T ++ N +        ++SLT++ QKEV ER+ A+ N   YG LS+L  
Sbjct: 119 KLVANLPYYVTTPIIVNLLKG---GYNFKSLTIMIQKEVAERMNAEPNCKDYGALSILVQ 175

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           +     ++  + P  F P PKV S VI       P       +   +I + AF  RRKTL
Sbjct: 176 YYCNTKIVRKVPPSCFIPRPKVDSIVIRLERLEEPSVKVKNEKLFFEIVRHAFNMRRKTL 235

Query: 238 RQS-----LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +     L +   E    + GI+   R E LS+ +F  +++ +
Sbjct: 236 WNATKNVKLPKELMEKAYEEVGIDPKRRGETLSLAEFGALSDAI 279


>gi|259501903|ref|ZP_05744805.1| dimethyladenosine transferase [Lactobacillus antri DSM 16041]
 gi|259170080|gb|EEW54575.1| dimethyladenosine transferase [Lactobacillus antri DSM 16041]
          Length = 297

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 150/292 (51%), Gaps = 22/292 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
                + I+  Y I  KK  GQNFL DLN+LK I  ++       VIEIG G G LT+ L
Sbjct: 9   SRTRTRAIMEKYGIHTKKGFGQNFLTDLNVLKNIVSAAEISKDDNVIEIGPGIGALTEQL 68

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIR 120
               A +V+ +E DQ   P+L ++ + + N + ++  D L+ +  +     F + + P++
Sbjct: 69  A-QAAGEVLALEIDQDLIPVLAEVLAPYDN-VTVLNQDVLQANLPELIKQQFADPAKPVK 126

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I + +L N ++A   P  W ++ ++ QKEV +R+TAQ  +  YG L++   +
Sbjct: 127 VVANLPYYITSPILMNLLAA---PVDWAAICVMMQKEVAQRLTAQPGTKQYGALTLAIEY 183

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTL 237
           +  A + F++S  VF P+P V S ++   P   P+   P   + L    +  F  RRK+L
Sbjct: 184 QMTAEIAFNVSRRVFVPAPNVDSAIVVLKPRATPLAVEPFDKQKLFGFIRACFAHRRKSL 243

Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +L+   G+          +L Q  I    R E L++E F ++ N L   Q
Sbjct: 244 WNNLQAAVGKQPAVKEQLQAILTQLAISPQTRPERLTLEQFIKLANALHAAQ 295


>gi|251793858|ref|YP_003008590.1| dimethyladenosine transferase [Aggregatibacter aphrophilus NJ8700]
 gi|247535257|gb|ACS98503.1| dimethyladenosine transferase [Aggregatibacter aphrophilus NJ8700]
          Length = 287

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 90/273 (32%), Positives = 136/273 (49%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL D N+++ I  +        ++EIG G G LT+ +      ++ 
Sbjct: 5   KHLGHTARKRFGQNFLHDNNVIQNIVAAIYPQSHQFLVEIGPGLGALTEPVAEQ-VERLT 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYN 128
           V+E D+     L+     H  +L +I+ DA++ DF      E        +R+  NLPYN
Sbjct: 64  VLELDRDLAERLRHHPFLHQ-KLSVIETDAMQFDFSGLYEQEHLAEKGQKMRVFGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + 
Sbjct: 123 ISTPLMFHLFKYH---HIIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVMPVL 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++ P  F P+PKV S V+  IPH         L  L ++  +AF +RRKTLR +L  L  
Sbjct: 180 EVPPSAFKPAPKVDSAVVRLIPHAILPHPVKDLYWLNRVCSQAFNQRRKTLRNALSDLFL 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              L    I+ N RAENLSI D+ R+ N L DN
Sbjct: 240 PENLTALNIDLNARAENLSIADYARLANWLADN 272


>gi|153873941|ref|ZP_02002345.1| Ribosomal RNA adenine methylase transferase [Beggiatoa sp. PS]
 gi|152069594|gb|EDN67654.1| Ribosomal RNA adenine methylase transferase [Beggiatoa sp. PS]
          Length = 266

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 94/262 (35%), Positives = 145/262 (55%), Gaps = 7/262 (2%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P+K  GQ+FL D  I+++I  +        ++EIG G G LT  LL  G   + VIE 
Sbjct: 2   HFPRKRFGQHFLHDTGIIQRIITAIAPQKEQHLVEIGPGKGALTLPLLQQG-FALDVIEF 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK  ++    +L I+  DALK DF++      P+RI  NLPYNI T LLF+ +
Sbjct: 61  DRDLVEWLKQ-NTLSSQQLNILSADALKFDFKQLVTDKQPLRIFGNLPYNISTSLLFHLV 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             +      + +T + QKEV +R+ A  ++ +YGRLSV+  +  +   +FD+ P  F P 
Sbjct: 120 HYNNH---IQDMTFMLQKEVVDRMIATPSTKNYGRLSVMLQYYCQINKLFDVDPEAFRPP 176

Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV ST++  IPH++P       + L K+   AF ++RKTLR +LK +   + +  AGI+
Sbjct: 177 PKVNSTIVQLIPHVSPPVEVINDKQLSKMVALAFSQKRKTLRNTLKNVLDADAIQAAGID 236

Query: 257 TNLRAENLSIEDFCRITNILTD 278
              RAE L++ +F R+ N   +
Sbjct: 237 PQARAETLTLAEFARLANSFVN 258


>gi|308179573|ref|YP_003923701.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045064|gb|ADN97607.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 296

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 142/286 (49%), Gaps = 20/286 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
                + I+  Y +  KK +GQNFL D N+L  I  ++       VIEIG G G LT+ L
Sbjct: 10  SPARTRAIMHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYL 69

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRI 121
               A  V+  E D +  PIL +  + + N + ++  D LK D      +  +   P+++
Sbjct: 70  A-RAAHHVLAFEIDDRLLPILDETLADYDN-VTVVNQDILKADLAAMISEHLDNERPLKL 127

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T +L N ++ D     +E++ ++ QKEV +R+ A+  +  YG L++   +R
Sbjct: 128 VANLPYYITTPILMNILAGDVA---FENIVVMMQKEVADRLAAEPGTKAYGALTIAVQYR 184

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
             A M   +   VF PSP V S ++     P    +P    +  K+ +  F  RRK L  
Sbjct: 185 MAAEMAMVVPRTVFVPSPNVDSAIVKLTALPPRTHVPFDEAAFFKVVKAGFAHRRKNLWN 244

Query: 240 SLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +L+ L G+           L  A I+  +RAE L++++F  +T+ L
Sbjct: 245 NLQSLFGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDAL 290


>gi|116871577|ref|YP_848358.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458009|sp|A0AEZ3|RSMA_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116740455|emb|CAK19575.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 295

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 146/283 (51%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++G      VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAGISKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVITQQFSKSELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                         L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290


>gi|225575697|ref|ZP_03784307.1| hypothetical protein RUMHYD_03790 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037077|gb|EEG47323.1| hypothetical protein RUMHYD_03790 [Blautia hydrogenotrophica DSM
           10507]
          Length = 294

 Score =  284 bits (727), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 155/299 (51%), Gaps = 22/299 (7%)

Query: 1   MT---MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT   + +  +++  IL  Y  + +K  GQNFL+D ++L KI  +S       V+EIG G
Sbjct: 1   MTKPYLGDPKNTI-EILKKYDFVFQKRFGQNFLIDTHVLDKIIRASDIQKSDFVLEIGPG 59

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---N 114
            G +TQ L    AR+V+ +E D+   PILKD  S + N + +I +D LKVD  K     N
Sbjct: 60  IGTMTQYLAD-AAREVVAVEIDKSLIPILKDTLSSYSN-VTVINEDVLKVDIRKIAEERN 117

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
              PI+++ANLPY I T ++             ES+T++ QKEV +R+     +  YG L
Sbjct: 118 EGKPIKVVANLPYYITTPIIMGLFEKKVP---IESITIMVQKEVADRMKVGPGTKDYGAL 174

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232
           S+   +  +  M+ ++  + F P PKV S VI  + H  P     +   +  + + +F +
Sbjct: 175 SLAVQYYAEPKMIANVPSNCFMPRPKVGSAVIQLLRHEKPPVEVDDESQMFAMIRASFNQ 234

Query: 233 RRKTLRQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           RRKTL          +L++   E  L   G+  N+R E L++++F  ++N L   ++++
Sbjct: 235 RRKTLVNGLKNSRELNLQKEEIEEALTACGLSLNVRGEMLTLKEFSDLSNFLVRKRNVS 293


>gi|88704595|ref|ZP_01102308.1| Dimethyladenosine transferase [Congregibacter litoralis KT71]
 gi|88700916|gb|EAQ98022.1| Dimethyladenosine transferase [Congregibacter litoralis KT71]
          Length = 268

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 88/265 (33%), Positives = 136/265 (51%), Gaps = 7/265 (2%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P+K  GQNFL D  ++ ++  +        ++EIG G G LT  LL  G  ++  IE 
Sbjct: 9   HQPRKRFGQNFLRDPGVIDRLERAIAPAASQHLVEIGPGLGALTDALLQSGC-QLDAIEL 67

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L    S HPN   +   DALK DF         +R++ NLPYNI T L+F  +
Sbjct: 68  DRDLVTPLLAAFSIHPN-FTLHSADALKFDFSSVVRGEEQLRVVGNLPYNISTPLIFRLL 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P  + +  + Q EV +R+TA   + H+GRL ++  +  +  ++F++ P  F P 
Sbjct: 127 EQA---PIIKDMHFMLQLEVVQRLTATPGNKHWGRLGIMAQYLCRTELLFEVPPEAFDPP 183

Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S +I   PH +P    C  + L+K+ + AF +RRKTLR +LK L  +  +   GI+
Sbjct: 184 PKVQSAIIRLTPHQSPLYPDCDSKILEKVVKAAFAQRRKTLRNNLKGLLTDEAIEATGID 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281
              RAE L++  F  +   L ++Q 
Sbjct: 244 PGCRAETLALARFVALAEQLENSQP 268


>gi|163814787|ref|ZP_02206176.1| hypothetical protein COPEUT_00938 [Coprococcus eutactus ATCC 27759]
 gi|158450422|gb|EDP27417.1| hypothetical protein COPEUT_00938 [Coprococcus eutactus ATCC 27759]
          Length = 287

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 145/290 (50%), Gaps = 19/290 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           ++N   ++   +  Y+   +K  GQNFL+D +++ KI  ++       V+EIG G G +T
Sbjct: 4   LSNPQVTI-ETIKKYEFAFQKKFGQNFLIDSHVINKIISAADITKDDCVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISSPI 119
           Q L    A +V+ +E D+   PIL +  +++ N + +I DD LKVD  K     N   PI
Sbjct: 63  QYLAES-AGQVVAVEIDKNLLPILDETLAEYDN-VTVINDDILKVDINKIVEERNGGRPI 120

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++              S+T++ QKEV +R+     +  YG LS+   
Sbjct: 121 KVVANLPYYITTPIIMGLFEKHVP---LLSVTVMVQKEVADRMQVGPGTKDYGALSLAVQ 177

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           +  +  ++ ++ P+ F P P V S VI       P       + + ++ + +F +RRKTL
Sbjct: 178 YYAEPYIVANVPPNCFIPRPGVGSAVIRLTRFQEPPVKVKDEQLMFRLIRASFNQRRKTL 237

Query: 238 RQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +         S  +      L   GI  N+R E+L + +F  +++IL+D 
Sbjct: 238 QNGIANSGELSFTKEEVAKALESLGISANIRGESLGLAEFAALSDILSDK 287


>gi|290892256|ref|ZP_06555251.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-071]
 gi|290558082|gb|EFD91601.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-071]
          Length = 295

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNVQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                         L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|157149731|ref|YP_001449514.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189028823|sp|A8AUQ4|RSMA_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157074525|gb|ABV09208.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 290

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/293 (33%), Positives = 147/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++  D LKVD      +F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VTVVNQDILKVDLAQYIAEFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+AQ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQKEVADRISAQPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P       +   K+T+ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPAVEVQDEKFFFKVTKASFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         EN L +A +  N+R E L +  F R+++ L  
Sbjct: 235 KTLWNNLTSYFGKSEEVKEKLENALAKANLVANVRGEALDLVAFARLSDALKS 287


>gi|315222376|ref|ZP_07864281.1| dimethyladenosine transferase [Streptococcus anginosus F0211]
 gi|315188537|gb|EFU22247.1| dimethyladenosine transferase [Streptococcus anginosus F0211]
          Length = 291

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/293 (31%), Positives = 149/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + +L  +    KK  GQNFL D NIL+KI +++   + + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LK D     ++F N +
Sbjct: 60  LTEFLAENTA-EVMAFEIDDRLVPILADTLRDFDN-VRVVNEDILKSDLQARIKEFANPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+AQ NS  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNSKSYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P           K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVGVKDEAFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E+ L  A +  ++R E L +++F  + + L D
Sbjct: 235 KTLWNNLTSYFGKSNEVKTKLESALDNAELSPSVRGEALDLQEFAHLADSLYD 287


>gi|160882017|ref|YP_001560985.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg]
 gi|189028804|sp|A9KL97|RSMA_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|160430683|gb|ABX44246.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg]
          Length = 290

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 18/290 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + +   ++  +L+ Y+ I +K  GQNFL+D ++L+KI  S+       V+EIG G G +T
Sbjct: 4   LGDPKQTI-EVLNRYRFIFQKKFGQNFLIDTHVLEKIIRSAEITKDDLVLEIGPGIGTMT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L    AR+V+ +E D+   PIL+  +    + + II +D LKVD  +     N   PI
Sbjct: 63  QYLCE-NAREVVAVEIDKNLIPILEQDTLSSYDNVTIINEDILKVDINQIVKEKNGGKPI 121

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++     A       +++T++ QKEV +R+ +   S  YG LS+   
Sbjct: 122 KVVANLPYYITTPIIMGLFEAHVP---IDNITVMVQKEVADRMQSGPGSKDYGALSLAVQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           +     ++ ++ P+ F P P V S VI    H +          L K+ + +F +RRKTL
Sbjct: 179 YYADPYIVANVPPNCFMPRPNVGSAVIRLTLHQDAPVKVKNENLLFKLIRASFNQRRKTL 238

Query: 238 RQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                     SL +      + + G+   +R E L++E F ++ +I+ + 
Sbjct: 239 ANGLNNSPEISLPKEMISEAIEELGVVATIRGEALTLEQFAKLADIIDEK 288


>gi|77412114|ref|ZP_00788438.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111]
 gi|77161821|gb|EAO72808.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111]
          Length = 290

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K+ + + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G 
Sbjct: 1   MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL    ++  N ++++  D LK D     + F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILAGTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A  N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMMQKEVADRISAMPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ AF  RR
Sbjct: 175 AVQYYMTAKVSFIVPRTVFVPAPNVDSVILKMVRRDQPVVSVQDEDFFFRVSKVAFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI DF  + + L +
Sbjct: 235 KTLWNNLTSHFGKSEDTKAKLEKALEIAKIKPSIRGEALSIPDFASLADALKE 287


>gi|237746914|ref|ZP_04577394.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter
           formigenes HOxBLS]
 gi|229378265|gb|EEO28356.1| dimethyladenosine transferase dimethyltransferase [Oxalobacter
           formigenes HOxBLS]
          Length = 256

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/261 (38%), Positives = 136/261 (52%), Gaps = 7/261 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P+K  GQNFL D ++L KI  +        ++EIG G G +T  LL   +R + VIE
Sbjct: 2   KHLPRKRFGQNFLKDPSVLDKIIAAIAPAASDIMVEIGPGMGAMTGKLLPSLSR-LEVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFN 136
            D+     L++     P +L + Q DAL  D           IRI+ NLPYNI T LLF+
Sbjct: 61  LDRDLVVYLRNTFP--PEKLVVHQGDALAFDMRSLKEQSGEKIRIVGNLPYNISTPLLFH 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +    +  F +    + Q+EV ER+ A+  S  YGRLSV+  W+    M+F + P  F 
Sbjct: 119 LLE---FSLFVKDQHFMLQREVVERMVAEPGSKAYGRLSVMLQWQYDMDMLFIVPPEAFD 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P PKV S V+  IP  NP  C   +L+K   +AF +RRK LR +L     E  L   GIE
Sbjct: 176 PQPKVDSAVVRMIPKENPEKCSFPALEKTVTQAFSQRRKMLRNNLAPFFTEAELTGLGIE 235

Query: 257 TNLRAENLSIEDFCRITNILT 277
              R E LS+E F R+ N L 
Sbjct: 236 PTKRPEELSVEQFIRLANHLK 256


>gi|77361550|ref|YP_341125.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis
           TAC125]
 gi|119365048|sp|Q3IFD1|RSMA_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|76876461|emb|CAI87683.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           Kasugamycin dimethyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 268

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/267 (34%), Positives = 133/267 (49%), Gaps = 7/267 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+ KI  +        ++EIG G G +T+ +  L    + V
Sbjct: 6   HLGHRARKRFGQNFLFDDMIIGKIVSAIDPKPEDNLVEIGPGLGAITEPVAELSGH-LTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L +     P +L + Q DA+  DF         +++  NLPYNI T LLF
Sbjct: 65  VELDKDLAQRLIEHPFLGP-KLTVNQGDAMTFDFASLVRDDKKLKVFGNLPYNISTPLLF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +    E +  + QKEV +R+ A   S  +GRLSV+T +   A  + ++ P  F
Sbjct: 124 HLFE---FADNIEHMHFMLQKEVVKRMVAGPGSKTFGRLSVMTQYYCNAMPVIEVPPECF 180

Query: 196 FPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P+PKV S VI  IP          ++ L  +  EAF +RRKTLR SL  L   + L   
Sbjct: 181 KPAPKVDSAVIRLIPKKPEQRTAKSVKILNNVCLEAFNQRRKTLRNSLSNLLTADELTSI 240

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
           GI+  LRAE LS++ F  I N + DN+
Sbjct: 241 GIDVTLRAERLSLQQFIDIANWIYDNK 267


>gi|319940004|ref|ZP_08014358.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
           anginosus 1_2_62CV]
 gi|319810718|gb|EFW07045.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
           anginosus 1_2_62CV]
          Length = 291

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 152/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + +L  +    KK  GQNFL D NIL+KI +++   + + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D++  PIL D      N + ++ +D LK D     ++F N S
Sbjct: 60  LTEFLAENAA-EVMTFEIDERLVPILADTLRDFDN-VCVVNEDILKSDLQVRIKEFANPS 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+AQ NS  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQREVADRISAQPNSKSYGNLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P           K+++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPAVGVKDEAFFFKVSKASFTHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E+ L  A +  ++R E L++++F R+ + L D
Sbjct: 235 KTLWNNLTSYFGKSNEVKTKLESALDNAELSPSVRGEALNLQEFARLADSLYD 287


>gi|332522163|ref|ZP_08398415.1| dimethyladenosine transferase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313427|gb|EGJ26412.1| dimethyladenosine transferase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 290

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 149/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N +++I  D LK D     + F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVINQDILKADLQTQIQGFENPE 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++     + P+      +   ++ +  F  RR
Sbjct: 175 AVQYYMVAKVAFIVPRTVFVPAPNVDSAILKMERRVEPLIKVQDEDFFFRVAKVGFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         EN L  AGI+ N+R E L+I +F ++ + L  
Sbjct: 235 KTLWNNLTSHFGKSEETKKKLENALELAGIKANIRGEALTIAEFGKLADALKS 287


>gi|304311710|ref|YP_003811308.1| Dimethyladenosine transferase [gamma proteobacterium HdN1]
 gi|301797443|emb|CBL45663.1| Dimethyladenosine transferase [gamma proteobacterium HdN1]
          Length = 279

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/262 (32%), Positives = 129/262 (49%), Gaps = 7/262 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           +    KK  GQNFL D +++  I  +        ++EIG G G LT  LL     ++  I
Sbjct: 9   HGHTVKKRFGQNFLHDPHVIDSIVAAVNPQKSDNLVEIGPGQGALTGALLPYL-DQLQAI 67

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   P L    +    +L I Q DAL+ DF    +    +R++ NLPYNI T LLF+
Sbjct: 68  ELDRDLIPYLLASFATT-GKLHIHQADALRFDFGTLIHPDKKLRVVGNLPYNISTPLLFH 126

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +   +     + +  + QKEV +R+ A  N   YGRL ++  +      +FD+ P  F 
Sbjct: 127 LLDYAS---GIQDMHFMLQKEVVDRMAAGANEEAYGRLGIMIQYHCNVEALFDVPPEAFN 183

Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKVTS ++   P          ++ L  +  EAF +RRKT+R +LK       L   G
Sbjct: 184 PPPKVTSAIVRLTPRSAHVTPALDVKLLGTLVTEAFTQRRKTVRNALKNRLSPEDLEACG 243

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           I+  LR ENL++ D+  + N L
Sbjct: 244 IDLKLRPENLTLNDYVSLANYL 265


>gi|313635198|gb|EFS01504.1| dimethyladenosine transferase [Listeria seeligeri FSL N1-067]
          Length = 295

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIP---VDSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+          ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDEAFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             E           L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKLSNFLAD 290


>gi|304438548|ref|ZP_07398487.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368386|gb|EFM22072.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 292

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/275 (33%), Positives = 147/275 (53%), Gaps = 14/275 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + ILS + +   K++GQNFL+D  +++ I +++      TV+EIG G G LTQ L   G
Sbjct: 14  TRHILSAFHLRASKWLGQNFLVDAGVVRAIVDAADLSRSDTVLEIGPGIGTLTQGLAESG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPY 127
           AR ++ +E D++   +L +    + N + ++  D LK+D  +  N+      +++ANLPY
Sbjct: 74  AR-IVAVELDKKLPAVLAETLKGYDN-VTVVPGDILKLDILRILNLGAGERFKVVANLPY 131

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T +L   +         E +  + QKEV  R+TA+  S  YG LS+   + T A ++
Sbjct: 132 YITTPILMALLEQHLP---IERMVTMVQKEVAVRMTARPGSKDYGALSIAVQYYTDAHIV 188

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P+P+VTS VI       P   P   +   ++ + AFG+RRKTL  +L   G
Sbjct: 189 MDVPPRAFMPAPEVTSAVIACRMRETPSVCPTDEKLFFRLVRAAFGQRRKTLLNALTGAG 248

Query: 246 -GENL----LHQAGIETNLRAENLSIEDFCRITNI 275
             + L    L  AGI  +LR E LS+ DF R+++ 
Sbjct: 249 LTKELCRAGLAAAGIAESLRGEQLSLADFARLSDA 283


>gi|217965726|ref|YP_002351404.1| dimethyladenosine transferase [Listeria monocytogenes HCC23]
 gi|254807872|sp|B8DGN7|RSMA_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|217334996|gb|ACK40790.1| dimethyladenosine transferase [Listeria monocytogenes HCC23]
 gi|307569727|emb|CAR82906.1| dimethyladenosine transferase [Listeria monocytogenes L99]
          Length = 295

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAYSN-VQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                         L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|289433536|ref|YP_003463408.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169780|emb|CBH26316.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 295

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+          ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDESFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             E           L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKLSNFLAD 290


>gi|224826759|ref|ZP_03699859.1| dimethyladenosine transferase [Lutiella nitroferrum 2002]
 gi|224600979|gb|EEG07162.1| dimethyladenosine transferase [Lutiella nitroferrum 2002]
          Length = 258

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/265 (35%), Positives = 140/265 (52%), Gaps = 11/265 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D +++  I  +     G  V+EIG G G LT+ LL      + V+E
Sbjct: 3   KHIPRKRFGQNFLQDASVIASIVHAVNPQPGDIVVEIGPGLGALTRPLLARLPH-LHVVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     LK      P RL I + DAL  D   F +I +  ++I NLPYNI T LLF+ 
Sbjct: 62  IDRDIISRLKSEFP--PERLTIHEGDALAFD---FSSIGTRFKLIGNLPYNISTPLLFHL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
               ++      +  + QKEV ER+ A+ ++  YGRL+V+  +R +   +  + P  F+P
Sbjct: 117 ---ASYGDRVVDMHFMLQKEVIERMVAEPSTADYGRLTVMLQYRFEMEQILHVPPGAFWP 173

Query: 198 SPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S V+  IP      +      L+ +   AF +RRKTLR +LK +  E      GI
Sbjct: 174 PPKVESAVVRMIPAPGRCGVATDEAELEALVTLAFSQRRKTLRNNLKGVLDEADFAALGI 233

Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280
           ++ LR ENL++E +  + N+L+  +
Sbjct: 234 DSGLRPENLTVEQYVAMANLLSSRR 258


>gi|220935881|ref|YP_002514780.1| dimethyladenosine transferase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997191|gb|ACL73793.1| dimethyladenosine transferase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 267

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 135/260 (51%), Gaps = 7/260 (2%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            IP+K  GQ+FL +  I++++  +     G  ++EIG G G LT  LL    R + V+E 
Sbjct: 5   HIPRKRFGQHFLHETAIIERMVAAIAPRPGEALVEIGPGLGALTAPLLERC-RVLHVVEL 63

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   P L +        L + Q DAL+ DF         +R++ NLPYNI T L+F+ +
Sbjct: 64  DRDVIPPLVERCQGL-GELRVHQADALRFDFATLAPEGGQLRVVGNLPYNISTPLIFHLL 122

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            +    P    +  L QKEV +R+ A  N+  YGRLSV+T +  +A  +F + P  F P 
Sbjct: 123 KSA---PRIRDMHFLLQKEVVDRLAAAPNTRDYGRLSVMTQYHCRAEALFRVGPGAFRPP 179

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S  +   P    P P   E+L   +  +AF +RRKTLR +++ +   + +  AG++
Sbjct: 180 PKVDSAYVRLTPWETLPHPAADEALFASLVNQAFTQRRKTLRNAVRGMADADTIEAAGLD 239

Query: 257 TNLRAENLSIEDFCRITNIL 276
              R E LS+  F  + N +
Sbjct: 240 PAARPETLSVAQFVALANRI 259


>gi|15896238|ref|NP_349587.1| dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824]
 gi|27151592|sp|Q97EX0|RSMA_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|15026041|gb|AAK80927.1|AE007795_6 Dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824]
          Length = 276

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/279 (32%), Positives = 144/279 (51%), Gaps = 12/279 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K  + + I+  Y     K +GQNFL D  +L  I E++       +IEIG G G LT+ L
Sbjct: 2   KEFNTRQIVEKYNFRFSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRL 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   A+KV  IE D+   PI+ +   ++ N   +I +DALKVDF         ++++ANL
Sbjct: 62  LE-KAKKVCAIELDESLIPIITNEMKEYDN-FTLIHNDALKVDFNNIIGEEQSVKLVANL 119

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++       ++SLT++ QKEVG+RI A+ ++  YG L++L  +     
Sbjct: 120 PYYVTTPIISKLLNE---GYNFKSLTIMIQKEVGDRIAAKPSTKDYGALTLLVQYYCDVK 176

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243
           ++  + P  F P PKV S VI       P       +    + + AF  RRKTL  ++K 
Sbjct: 177 VVRVVKPSCFIPQPKVDSLVIRLDKLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKG 236

Query: 244 LG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L       E     AGI++  R E LSIE+F ++++ + 
Sbjct: 237 LKLSSEDLEKAFEAAGIDSKRRGETLSIEEFGKLSDEIY 275


>gi|114319429|ref|YP_741112.1| dimethyladenosine transferase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225823|gb|ABI55622.1| dimethyladenosine transferase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 274

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 138/264 (52%), Gaps = 8/264 (3%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           +H +  P+K  GQNFL D  ++ ++ ++     G  ++EIG G G LT  LL   A ++ 
Sbjct: 3   NHRRHRPRKRFGQNFLHDPTLISRMVKAIRPRPGDPLVEIGPGEGALTLPLL-RAAGRLT 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRL 133
            +E D+     L+   ++    L + Q DAL+ DF +        +R++ NLPYNI T L
Sbjct: 62  AVELDRDLVAPLQAR-ARTAGELTVHQADALRFDFRQLAPAPPARLRVVGNLPYNISTPL 120

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ + +       + +    QKEV ER+ A   S  YGRLSV+  +R   T +F + P 
Sbjct: 121 LFHLLESAD---VIQDMHFTLQKEVVERLAAPPGSKTYGRLSVMVQYRCAVTNLFRLPPG 177

Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P PKV S  +  +PH  P       ++  ++  +AF +RRKTLR +L+ L   + + 
Sbjct: 178 AFRPPPKVDSAFVRLVPHAEPTVDVGDEQAFARLVTQAFSQRRKTLRNTLRPLMSADTII 237

Query: 252 QAGIETNLRAENLSIEDFCRITNI 275
             GI+   RAENLS+E F  ++  
Sbjct: 238 GVGIDPRERAENLSLEQFAALSQA 261


>gi|260584339|ref|ZP_05852086.1| dimethyladenosine transferase [Granulicatella elegans ATCC 700633]
 gi|260157857|gb|EEW92926.1| dimethyladenosine transferase [Granulicatella elegans ATCC 700633]
          Length = 306

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 146/286 (51%), Gaps = 20/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + I+  + I  KK +GQNFL++ NIL K+ + +       VIEIG G G LTQ L 
Sbjct: 21  PTRTREIMERHGIKVKKSLGQNFLIEPNILTKMLDVADVNKETNVIEIGPGIGALTQRLA 80

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122
              A+KV+  E D +  P+L+D  S H N + +I +D LKVD E    + F++   + ++
Sbjct: 81  -RAAKKVLAFEIDGRLIPVLEDTLSDHDN-VTVIHEDILKVDLETVIQEHFDVEERLLVV 138

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ + + +       +   ++ QKEV ER+TAQ NS  YG L+V   +  
Sbjct: 139 ANLPYYITTPIIMDLLESGLP---IDGFAMMMQKEVAERMTAQPNSKAYGSLTVAIQYWC 195

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240
            A + F +   VF P+P V S ++       P+    +      + + +F +RRKTL  +
Sbjct: 196 HAKIGFIVPKTVFNPAPNVDSAILVLERREEPLVTVKDEAFFFDLVKNSFVQRRKTLWNN 255

Query: 241 LKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L +            +  L    IE N RAE L+IE+F  ++N L 
Sbjct: 256 LVKAYVPGKLTKEQIQEALDSVSIEPNRRAETLTIEEFAALSNQLQ 301


>gi|16802234|ref|NP_463719.1| dimethyladenosine transferase [Listeria monocytogenes EGD-e]
 gi|47096181|ref|ZP_00233780.1| dimethyladenosine transferase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224500359|ref|ZP_03668708.1| dimethyladenosine transferase [Listeria monocytogenes Finland 1988]
 gi|224503492|ref|ZP_03671799.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-561]
 gi|254829279|ref|ZP_05233966.1| dimethyladenosine transferase [Listeria monocytogenes FSL N3-165]
 gi|254832492|ref|ZP_05237147.1| dimethyladenosine transferase [Listeria monocytogenes 10403S]
 gi|254901027|ref|ZP_05260951.1| dimethyladenosine transferase [Listeria monocytogenes J0161]
 gi|254913905|ref|ZP_05263917.1| dimethyladenosine transferase dimethyltransferase [Listeria
           monocytogenes J2818]
 gi|254938304|ref|ZP_05270001.1| dimethyladenosine transferase [Listeria monocytogenes F6900]
 gi|255030001|ref|ZP_05301952.1| dimethyladenosine transferase [Listeria monocytogenes LO28]
 gi|27151582|sp|Q8YAE2|RSMA_LISMO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|16409545|emb|CAC98403.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
           monocytogenes EGD-e]
 gi|47015429|gb|EAL06363.1| dimethyladenosine transferase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601690|gb|EEW15015.1| dimethyladenosine transferase [Listeria monocytogenes FSL N3-165]
 gi|258610916|gb|EEW23524.1| dimethyladenosine transferase [Listeria monocytogenes F6900]
 gi|293591922|gb|EFG00257.1| dimethyladenosine transferase dimethyltransferase [Listeria
           monocytogenes J2818]
          Length = 295

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                         L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|47092871|ref|ZP_00230654.1| dimethyladenosine transferase [Listeria monocytogenes str. 4b
           H7858]
 gi|254825899|ref|ZP_05230900.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-194]
 gi|47018775|gb|EAL09525.1| dimethyladenosine transferase [Listeria monocytogenes str. 4b
           H7858]
 gi|293595137|gb|EFG02898.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-194]
 gi|328468506|gb|EGF39512.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Listeria monocytogenes 1816]
          Length = 295

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVIAEQFAKPDLPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                         L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPALKPRKDDLVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|255025830|ref|ZP_05297816.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-003]
          Length = 295

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                         L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPALKPRKAELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|217969878|ref|YP_002355112.1| dimethyladenosine transferase [Thauera sp. MZ1T]
 gi|217507205|gb|ACK54216.1| dimethyladenosine transferase [Thauera sp. MZ1T]
          Length = 272

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/270 (32%), Positives = 136/270 (50%), Gaps = 13/270 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D NI++KI +      G  ++EIG G G +T  L+      + V+E
Sbjct: 8   GHRARKRFGQNFLSDPNIIRKIIDGIRPQPGELMVEIGPGLGAMTDPLIERLGH-LHVVE 66

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIRIIANLPYNIGTR 132
            D+     L +  +  P +L + + DALK DF          +   +RI+ NLPYNI T 
Sbjct: 67  IDRDLIARLHERYT--PAQLTVHEGDALKFDFGSLCAGEEGGVGPRLRIVGNLPYNISTP 124

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +LF+      +    + +T + QKEV  R+ A+  +  YGRLSV+  +R +   +FD+ P
Sbjct: 125 ILFHL---AGFADQVKDMTFMLQKEVVMRMVAEPGTEEYGRLSVMLQYRFRMGRLFDVPP 181

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             F P+PKV S+++   P         +   L +I   AFG+RRKTLR +L+    +  L
Sbjct: 182 GAFRPAPKVMSSIVRMAPLPAEQLGARDEALLGRIVAAAFGQRRKTLRNTLREFIDDAGL 241

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQ 280
              GI+  LR E LS+E +  I N     +
Sbjct: 242 QALGIDPGLRGEKLSVEQYVAIANACAGRE 271


>gi|23010583|ref|ZP_00051221.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 263

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 122/260 (46%), Positives = 174/260 (66%), Gaps = 8/260 (3%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQNFL DLN+  +IA ++G+LDG+TV+E+G GPG LT+ LL  GA++V+ IE+D +  P
Sbjct: 2   LGQNFLFDLNLTGRIARAAGALDGVTVVEVGPGPGGLTRALLAAGAQRVVAIERDPRALP 61

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT-- 142
            L +I++ +P RL++I  DA+  D         P+RI+ANLPYN+ T LL  W+ A+T  
Sbjct: 62  ALAEIAAHYPGRLDVIDADAVGFDPRPLVGDG-PVRIVANLPYNVATVLLTGWLGAETRD 120

Query: 143 --WPPFWESLTLLFQKEVGERITAQKNSP-HYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             WPP+WES TL+FQ+EV ERI A +    +YGRL VL GWRT+AT++FD++P  F P P
Sbjct: 121 EVWPPWWESATLMFQREVAERIVADEGDRANYGRLGVLCGWRTQATILFDVAPSAFVPPP 180

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIET 257
           KVTS+++H  P   P+PC +  L+++T+ AFG+RRK LRQSLK    +   LL  AG+  
Sbjct: 181 KVTSSIVHLRPRPAPLPCRIADLERVTRAAFGQRRKMLRQSLKAATPDPARLLAAAGLPE 240

Query: 258 NLRAENLSIEDFCRITNILT 277
             RAE + +  F  +   L 
Sbjct: 241 TARAEEIPVAGFVALARALE 260


>gi|319759070|gb|ADV71012.1| dimethyladenosine transferase [Streptococcus suis JS14]
          Length = 290

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K +  + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADK-NVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D   +  N + ++  D LK D     + F N  
Sbjct: 60  LTEFLAE-NAGEVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTSILMHLIESKIP---FSEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L  A +E ++R E LS+ DF R+++ L +
Sbjct: 235 KTLWNNLTNHFGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287


>gi|325510393|gb|ADZ22029.1| dimethyladenosine transferase [Clostridium acetobutylicum EA 2018]
          Length = 287

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/279 (32%), Positives = 144/279 (51%), Gaps = 12/279 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K  + + I+  Y     K +GQNFL D  +L  I E++       +IEIG G G LT+ L
Sbjct: 13  KEFNTRQIVEKYNFRFSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRL 72

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   A+KV  IE D+   PI+ +   ++ N   +I +DALKVDF         ++++ANL
Sbjct: 73  LE-KAKKVCAIELDESLIPIITNEMKEYDN-FTLIHNDALKVDFNNIIGEEQSVKLVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++       ++SLT++ QKEVG+RI A+ ++  YG L++L  +     
Sbjct: 131 PYYVTTPIISKLLNE---GYNFKSLTIMIQKEVGDRIAAKPSTKDYGALTLLVQYYCDVK 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243
           ++  + P  F P PKV S VI       P       +    + + AF  RRKTL  ++K 
Sbjct: 188 VVRVVKPSCFIPQPKVDSLVIRLDKLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKG 247

Query: 244 LG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L       E     AGI++  R E LSIE+F ++++ + 
Sbjct: 248 LKLSSEDLEKAFEAAGIDSKRRGETLSIEEFGKLSDEIY 286


>gi|310639501|ref|YP_003944259.1| ribosomal RNA small subunit methyltransferase a [Paenibacillus
           polymyxa SC2]
 gi|309244451|gb|ADO54018.1| Ribosomal RNA small subunit methyltransferase A [Paenibacillus
           polymyxa SC2]
          Length = 294

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 19/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K I+  +    KK +GQNFL+D NIL KI  ++G  D    +EIG G G LT+ L 
Sbjct: 10  PRRTKEIIQRHGFSFKKSLGQNFLIDQNILSKIVNAAGLDDTKGALEIGPGIGALTEKLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122
              A+ V  +E DQ+  PIL+++ + + + +++   D LK+D  + F       S + ++
Sbjct: 70  QS-AKAVTAVEIDQRLLPILEEVLAPYEH-VKVRHGDVLKLDLREVFAADFADVSKVSVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +L   +         E++ ++ QKEV ER+ A   +  YG LS+   + +
Sbjct: 128 ANLPYYVTTPILMRLLEDKLP---LENIVVMIQKEVAERMAASPGTKDYGSLSIAVQYYS 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           +  ++  +   VF P P V S VI               +   ++   AF +RRKT+  +
Sbjct: 185 EPELVCTVPNTVFIPQPNVDSAVIRLRVREVPPVEVVDEKHFFEVVHAAFAQRRKTISNN 244

Query: 241 LKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK            E LL QA IE + R E LSIE+F R++ +L +
Sbjct: 245 LKSRFFTKENRDTLEPLLQQADIEPSRRGETLSIEEFARLSAVLLE 290


>gi|259048129|ref|ZP_05738530.1| dimethyladenosine transferase [Granulicatella adiacens ATCC 49175]
 gi|259035190|gb|EEW36445.1| dimethyladenosine transferase [Granulicatella adiacens ATCC 49175]
          Length = 289

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 148/285 (51%), Gaps = 20/285 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + I+  + +  KK +GQNFL++ NIL ++ E +G      VIEIG G G LT+ L 
Sbjct: 10  PKRTREIMERHGLTVKKSLGQNFLIEPNILTRMLEVAGVDKTTNVIEIGPGIGALTERLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122
              A++V+  E D +  P+L +  + + N + ++  D L VD E    + F+I+ P+ ++
Sbjct: 70  -REAKQVLAFEIDGRLLPVLDETLAPYDN-VTVVHSDILDVDLEQVIGEHFDINEPLLVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ N + +       +   ++ QKEV +R+TA+ NS  YG L++   +  
Sbjct: 128 ANLPYYITTPIIMNLLESKLP---IDGFAMMMQKEVAQRMTAEPNSKAYGSLTIAIQYFC 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           +A++ F +   VF P+P V S ++       P+           + + +F +RRKTL  +
Sbjct: 185 EASIGFIVPKTVFNPAPNVDSAILVLKRREKPLVEVKDEAKFFALVKNSFVQRRKTLWNN 244

Query: 241 LKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L +               L  AGI+   RAE L+IE+F R+++ L
Sbjct: 245 LAKAYVGNSHTKESLAAALEVAGIDPTRRAETLTIEEFARLSDAL 289


>gi|270290912|ref|ZP_06197136.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4]
 gi|304386409|ref|ZP_07368742.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284]
 gi|270280972|gb|EFA26806.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4]
 gi|304327766|gb|EFL94993.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284]
          Length = 297

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/290 (31%), Positives = 150/290 (51%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N + + + IL  Y +  KK +GQNFL D N+L  I +++   DG  VIE+G G G+LT
Sbjct: 7   IGNPTRT-RAILEKYGLSAKKSLGQNFLTDPNVLVNIVDAAEINDGDDVIEVGPGIGSLT 65

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSP 118
           + +    A +V+  E DQ   P+L +  + + N + II +D LKV+      + F+   P
Sbjct: 66  EQIAKR-AHQVLAFEIDQNLIPVLDETLAPYDN-ITIINEDVLKVNVNEVVAEHFDGQHP 123

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T +L +++++         + ++ QKEV +R+TAQ     YG LSV+ 
Sbjct: 124 IKLVANLPYYITTPILKSFMASSLP---IAKMVVMMQKEVADRLTAQPGDKEYGSLSVVV 180

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236
            +R +  + F +   VF P PKV S ++   P  +    P       K     F  RRK 
Sbjct: 181 QYRMQTQVEFTVPARVFVPQPKVDSAIVSLTPRKDWPVYPADDRDFFKTVHGCFMHRRKN 240

Query: 237 LRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277
           L  +++ L G+          +L +  I+ ++R E L++ DF  + N + 
Sbjct: 241 LWNNMQGLYGKAPETKEKIQSVLDELEIDPHIRPERLTVVDFINLHNQIQ 290


>gi|223044398|ref|ZP_03614431.1| dimethyladenosine transferase [Staphylococcus capitis SK14]
 gi|222442187|gb|EEE48299.1| dimethyladenosine transferase [Staphylococcus capitis SK14]
          Length = 296

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 144/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+ KI ++S   D   VIE+G G G+LT+ L 
Sbjct: 9   PSRTRALLDQYGFNFKKSLGQNFLVDVNIINKIIDASQIDDTTGVIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122
              A+KV+  E DQ+  P+L+D  + + N + II +D LK +  K      +    I ++
Sbjct: 69  K-NAKKVMSFEIDQRLIPVLEDTLAPYDN-VTIINEDILKANISKAVHTHLSDCEKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A   +  YG LS++  + T
Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNATVGTKAYGSLSIVAQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQREEPLVQVDNEEAFFKLAKAAFAQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +         N L  A I+   R E L+I+DF  +  
Sbjct: 244 YQNFFKDGKKHKASILNWLESAEIDPKRRGETLTIQDFANLYE 286


>gi|302024552|ref|ZP_07249763.1| dimethyladenosine transferase [Streptococcus suis 05HAS68]
 gi|330833629|ref|YP_004402454.1| dimethyladenosine transferase [Streptococcus suis ST3]
 gi|329307852|gb|AEB82268.1| dimethyladenosine transferase [Streptococcus suis ST3]
          Length = 290

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 149/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K +  + +L  +    KK  GQNFL D NIL+KI  ++     + VIEIG G G 
Sbjct: 1   MRIADK-NVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEIDQNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D   +  N + ++  D LK D     + F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L  A +E ++R E LS+ DF R+++ L +
Sbjct: 235 KTLWNNLTNHFGKSDEVKDKLTRALGMAELEASVRGEALSMADFARLSDSLQE 287


>gi|126664694|ref|ZP_01735678.1| dimethyladenosine transferase [Marinobacter sp. ELB17]
 gi|126631020|gb|EBA01634.1| dimethyladenosine transferase [Marinobacter sp. ELB17]
          Length = 277

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/268 (33%), Positives = 140/268 (52%), Gaps = 8/268 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++++I  S       +++EIG G G +T  +L +  R + V+E
Sbjct: 6   GHQARKRFGQNFLHDPGVIERIVRSIAPKPDQSIVEIGPGLGAITAEILAVNPR-LQVVE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+   PIL+     +P    I Q DALK DF +      P+RII NLPYNI T L+F+ 
Sbjct: 65  LDRDLIPILRTKFFNYPE-FRIHQADALKFDFNELVGE-QPLRIIGNLPYNISTPLIFHL 122

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++        + +  + QKEV +R+ A     +YGRL ++T +  K   +F++ P  F P
Sbjct: 123 LA---HSGVVQDMHFMLQKEVVQRMAAVPGDNNYGRLGIMTQYFCKVQPLFEVGPDAFRP 179

Query: 198 SPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S ++  +P+   P P   L +L+ + + AF  RRKTLR++L        L Q GI
Sbjct: 180 APKVDSFIVRLVPYATLPHPAKDLGTLQAVVRSAFNARRKTLRKALGGFVTAAELQQLGI 239

Query: 256 ETNLRAENLSIEDFCRITNILTDNQDIA 283
              LR ENL + ++  I + L      A
Sbjct: 240 NDGLRPENLGLAEYVAIADYLVARAPGA 267


>gi|56961852|ref|YP_173574.1| dimethyladenosine transferase [Bacillus clausii KSM-K16]
 gi|62900485|sp|Q5WLW2|RSMA_BACSK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56908086|dbj|BAD62613.1| dimethyladenosine transferase [Bacillus clausii KSM-K16]
          Length = 296

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/295 (32%), Positives = 148/295 (50%), Gaps = 22/295 (7%)

Query: 1   MTMNNKSHSLK---TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M +N    +      IL  +    KK +GQNFL+DLNIL KI E+SG  +   ++EIG G
Sbjct: 1   MNLNKDIATPARTNAILKKHGFTLKKSLGQNFLIDLNILAKIVEASGFDEQDGIVEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----F 113
            G LT+ L    A KV+  E D +  P+L+D  S +PN ++II  D LK D        F
Sbjct: 61  IGALTEQLAK-KADKVVAFEIDGRLIPVLEDTLSAYPN-VKIIHSDVLKADLPGVLDAEF 118

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
           +    I ++ANLPY + T +L   +        ++S+T++ Q EV ERI A+  S  YG 
Sbjct: 119 SKGQAIHVVANLPYYVTTPILMKLLEDRLP---FKSITVMIQAEVAERIAAKPGSKEYGA 175

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFG 231
           LS+   +  +A  M  +   VF P P+V S+V+       P+   ++      +   +F 
Sbjct: 176 LSIAAQYYAEAKPMVVVPASVFVPQPRVDSSVLKLTIREKPLVEVIDERWFFNVFHASFA 235

Query: 232 KRRKTLRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            RRKT+  +L         +   E  L +AGI+   R E LS ++F R+++ L  
Sbjct: 236 NRRKTILNNLVHNLAGKDAKAAIEQALSEAGIDPKRRGETLSPQEFARLSDALYS 290


>gi|260437839|ref|ZP_05791655.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876]
 gi|292809864|gb|EFF69069.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876]
          Length = 287

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 148/291 (50%), Gaps = 19/291 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M ++N +++L  +++ ++   +K  GQNFL+D  I+ KI   +G      V+EIG G G 
Sbjct: 1   MYLSNPTNTL-AVINKHEFAFQKKFGQNFLIDEGIVNKIVREAGVTKDDFVLEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           +TQ+L    A  V  +E D    PILK+  +++ N + II +D LKVD +K     N   
Sbjct: 60  MTQLLCEQ-AGGVAAVEIDTNLIPILKETLAEYDN-VTIINEDILKVDIKKLAEEKNGGK 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T ++     ++      +S+T++ QKEV +R+     +  YG LS+ 
Sbjct: 118 PIKVVANLPYYITTPIIMGLFESNVP---IDSITVMVQKEVADRMQVGPGTKDYGALSLA 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             + +K  ++ ++ P  F P P V S VI    +  P       + + K+ + +F +RRK
Sbjct: 175 VQYYSKPQVVINVPPECFIPRPNVGSAVIRLTRYKEPPVKVKDEKLMFKLIRASFNQRRK 234

Query: 236 TLRQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           TL          +  +      +       ++R E L++ +F  +++  ++
Sbjct: 235 TLANGLNNSPEINFSKEEITAAIESLHKGPSIRGEALTLSEFAALSDYFSN 285


>gi|253752653|ref|YP_003025794.1| dimethyladenosine transferase [Streptococcus suis SC84]
 gi|253754479|ref|YP_003027620.1| dimethyladenosine transferase [Streptococcus suis P1/7]
 gi|253756412|ref|YP_003029552.1| dimethyladenosine transferase [Streptococcus suis BM407]
 gi|251816942|emb|CAZ52591.1| dimethyladenosine transferase [Streptococcus suis SC84]
 gi|251818876|emb|CAZ56719.1| dimethyladenosine transferase [Streptococcus suis BM407]
 gi|251820725|emb|CAR47487.1| dimethyladenosine transferase [Streptococcus suis P1/7]
          Length = 290

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K +  + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADK-NVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D   +  N + ++  D LK D     + F N  
Sbjct: 60  LTEFLAENAA-EVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTSILMHLIESKIP---FSEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L  A +E ++R E LS+ DF R+++ L +
Sbjct: 235 KTLWNNLTNHFGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 287


>gi|255657480|ref|ZP_05402889.1| dimethyladenosine transferase [Clostridium difficile QCD-23m63]
 gi|296449075|ref|ZP_06890865.1| dimethyladenosine transferase [Clostridium difficile NAP08]
 gi|296879898|ref|ZP_06903871.1| dimethyladenosine transferase [Clostridium difficile NAP07]
 gi|296262168|gb|EFH08973.1| dimethyladenosine transferase [Clostridium difficile NAP08]
 gi|296429187|gb|EFH15061.1| dimethyladenosine transferase [Clostridium difficile NAP07]
          Length = 289

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/287 (33%), Positives = 144/287 (50%), Gaps = 16/287 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +  ++ K ++  Y     K +GQNFL+D NI+ KI   +    G  +IE+G G G 
Sbjct: 1   MDRLSSHNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITGGDNIIEVGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           LT+ +  + A KV+ IE D+   PILKD  S   N  E++  D LKVD ++         
Sbjct: 61  LTREMGKI-AEKVVAIEIDRNLIPILKDTLSDLENT-EVVNQDILKVDIQELVKDKLNGG 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P++++ANLPY I T ++  ++  D        + ++ QKEV +R+ A   +  YG LS+ 
Sbjct: 119 PVKLVANLPYYITTPIVMKFLEEDIP---VTDIVVMVQKEVADRMNAIPGTKDYGALSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRK 235
             +     ++     H+F P P V STVI  H            E   K  + +FG+RRK
Sbjct: 176 VQYYCDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEEIFFKTVKASFGQRRK 235

Query: 236 TLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  SL  LG         +L +A I+   R E LSIE+F  ++NI+
Sbjct: 236 TLLNSLGGLGFLNKDEIREILKEANIDEKRRGETLSIEEFSVLSNII 282


>gi|332686219|ref|YP_004455993.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311]
 gi|332370228|dbj|BAK21184.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311]
          Length = 294

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/285 (35%), Positives = 142/285 (49%), Gaps = 20/285 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  Y    KK +GQNFL + NILKKI  ++     + VIE+G G G LT+ L 
Sbjct: 10  PSRTKEILKKYDFSLKKSLGQNFLTEPNILKKIVATANLTKEVNVIEVGPGIGALTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A +V+  E D     IL D    + N + I+  D LK D     +  F  + PI+I+
Sbjct: 70  QQ-AGQVLAFEIDHNLIRILADTLQPY-NNITIVNQDVLKTDLVKETQAVFQQAYPIKIV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L  ++ +D      E + ++ QKEV +RI+A+  +  YG LS+   +  
Sbjct: 128 ANLPYYITTPILMYFLQSDL---IVEEMVVMMQKEVADRISAKPGTKAYGSLSIAVQYFM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +AT+ F +   VF P P V S VI       PI      +   K+T+ AF  RRKTL  +
Sbjct: 185 EATIAFIVPKTVFVPQPNVDSAVIKLTRRSKPIVDVINEKEFFKLTRAAFQLRRKTLWNN 244

Query: 241 LKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNIL 276
           L    G+           L QA I  + R E LS+ +F R++N L
Sbjct: 245 LLHFYGKEESTKQWLIKSLEQAEIVASRRGETLSLAEFARLSNSL 289


>gi|16077110|ref|NP_387923.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221307851|ref|ZP_03589698.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312173|ref|ZP_03593978.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221317106|ref|ZP_03598400.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221321369|ref|ZP_03602663.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|585375|sp|P37468|RSMA_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|467431|dbj|BAA05277.1| high level kasgamycin resistance [Bacillus subtilis]
 gi|2632309|emb|CAB11818.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291482413|dbj|BAI83488.1| dimethyladenosine transferase [Bacillus subtilis subsp. natto
           BEST195]
          Length = 292

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 20/283 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL  Y    KK +GQNFL+D NIL +I + +   +   VIEIG G G LT+ L    
Sbjct: 11  TKEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A+KV+  E DQ+  PILKD  S + N + +I  D LK D     E+ F     I ++ANL
Sbjct: 70  AKKVVAFEIDQRLLPILKDTLSPYEN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   +         + + ++ QKEV ER+ A  +S  YG LS+   + T+A 
Sbjct: 129 PYYVTTPIIMKLLEEHLP---LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAK 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS--- 240
            +  +   VF P P V S VI  I    P           ++ + +F +RRKTL  +   
Sbjct: 186 TVMIVPKTVFVPQPNVDSAVIRLILRDGPAVDVENESFFFQLIKASFAQRRKTLLNNLVN 245

Query: 241 ------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                  ++   E +L +  I+   R E+LSIE+F  ++N L 
Sbjct: 246 NLPEGKAQKSTIEQVLEETNIDGKRRGESLSIEEFAALSNGLY 288


>gi|46906420|ref|YP_012809.1| dimethyladenosine transferase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|226222817|ref|YP_002756924.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
           monocytogenes Clip81459]
 gi|254853694|ref|ZP_05243042.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-503]
 gi|254933027|ref|ZP_05266386.1| dimethyladenosine transferase [Listeria monocytogenes HPB2262]
 gi|254992659|ref|ZP_05274849.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-064]
 gi|255519705|ref|ZP_05386942.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-175]
 gi|300764931|ref|ZP_07074920.1| dimethyladenosine transferase [Listeria monocytogenes FSL N1-017]
 gi|62900545|sp|Q724M5|RSMA_LISMF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|259494253|sp|C1KYC1|RSMA_LISMC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|46879684|gb|AAT02986.1| dimethyladenosine transferase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|225875279|emb|CAS03976.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258607073|gb|EEW19681.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-503]
 gi|293584586|gb|EFF96618.1| dimethyladenosine transferase [Listeria monocytogenes HPB2262]
 gi|300514418|gb|EFK41476.1| dimethyladenosine transferase [Listeria monocytogenes FSL N1-017]
 gi|328469720|gb|EGF40642.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Listeria monocytogenes 220]
 gi|332310597|gb|EGJ23692.1| Ribosomal RNA small subunit methyltransferase A [Listeria
           monocytogenes str. Scott A]
          Length = 295

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNIQVVHGDVLKADVEEVIAEQFAKPDLPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                         L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|154684561|ref|YP_001419722.1| dimethyladenosine transferase [Bacillus amyloliquefaciens FZB42]
 gi|154350412|gb|ABS72491.1| KsgA [Bacillus amyloliquefaciens FZB42]
          Length = 293

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/293 (34%), Positives = 144/293 (49%), Gaps = 24/293 (8%)

Query: 3   MNNK----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           MNNK        K IL  Y    KK +GQNFL+D NIL +I + +   D   VIEIG G 
Sbjct: 1   MNNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGI 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFN 114
           G LT+ L    A+KV+  E DQ+  PIL D  S + N + II  D LK D     E+ F 
Sbjct: 61  GALTEQLAKR-AKKVVAFEIDQRLLPILNDTLSPYDN-VTIIHQDVLKADVKSVIEEQFQ 118

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
               I + ANLPY + T ++   +         + + ++ QKEV ER+ A  +S  YG L
Sbjct: 119 DCDEIMVTANLPYYVTTPIIMKLLEEHLP---LKGIVVMLQKEVAERMAADPSSKEYGSL 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232
           S+   + T+A  +  +   VF P P V S VI  +    P           ++ + +F +
Sbjct: 176 SIAVQFYTEAKTVMTVPKTVFVPQPNVDSAVIRLLLRDGPAVDVDNEPFFFQLIKASFAQ 235

Query: 233 RRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RRKTL  +L         K+   E +L +  I+   R E+LSIE+F  ++N L
Sbjct: 236 RRKTLLNNLVNNLPGGKEKKAQIEEVLQETNIDGKRRGESLSIEEFALLSNGL 288


>gi|321313712|ref|YP_004205999.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Bacillus subtilis BSn5]
 gi|320019986|gb|ADV94972.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Bacillus subtilis BSn5]
          Length = 292

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 20/283 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL  Y    KK +GQNFL+D NIL +I + +   +   VIEIG G G LT+ L    
Sbjct: 11  TKEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A+KV+  E DQ+  PILKD  S + N + +I  D LK D     E+ F     I ++ANL
Sbjct: 70  AKKVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   +         + + ++ QKEV ER+ A  +S  YG LS+   + T+A 
Sbjct: 129 PYYVTTPIIMKLLEEHLP---LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAK 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS--- 240
            +  +   VF P P V S VI  +    P           ++ + +F +RRKTL  +   
Sbjct: 186 TVMIVPKTVFVPQPNVDSAVIRLVLRDGPAVDVENESFFFQLIKASFAQRRKTLLNNLVN 245

Query: 241 ------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                  ++   E +L +  I+   R E+LSIE+F  ++N L 
Sbjct: 246 NLPEGKAQKSTIEQVLEETNIDGKRRGESLSIEEFAALSNGLY 288


>gi|254480940|ref|ZP_05094186.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2148]
 gi|214038735|gb|EEB79396.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2148]
          Length = 264

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/260 (36%), Positives = 138/260 (53%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  P+K  GQNFL D +++  IA +  S +   ++EIG G G LT+ L++ G  ++ VIE
Sbjct: 7   QHAPRKRFGQNFLTDDSVIGGIAGAIASRESDHIVEIGPGQGALTEALVSSGC-QLDVIE 65

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L    S H    ++   DALK DF    +    +RI+ NLPYNI T L+F  
Sbjct: 66  LDRDLIAGLLAAFSIHKG-FKLHSADALKFDFSSLVDGDKKLRIVGNLPYNISTPLIFKL 124

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +         E +  + Q EV ER+ AQ  +  +GRL ++T ++ +   +FD+ P  F P
Sbjct: 125 LENAA---IIEDMHFMLQLEVVERLAAQPGNKTWGRLGIMTQYQCEVEHLFDVPPEAFNP 181

Query: 198 SPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++   P+   P P C    L+K+ Q AF +RRKTLR +LK L   + L   GI
Sbjct: 182 PPKVQSAIVRLKPYQQSPWPACDGNQLRKVVQTAFAQRRKTLRNNLKGLINGDGLEALGI 241

Query: 256 ETNLRAENLSIEDFCRITNI 275
           +   RAE L +  F  ITN 
Sbjct: 242 DPAARAETLQLTQFITITNA 261


>gi|311028973|ref|ZP_07707063.1| dimethyladenosine transferase [Bacillus sp. m3-13]
          Length = 296

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 139/285 (48%), Gaps = 20/285 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  Y    KK +GQNFL+D NIL+ I E     +    IEIG G G LT+ + 
Sbjct: 8   PKRTKEILDKYGFSFKKSLGQNFLIDTNILRNIVEYGEVSEKTAAIEIGPGIGALTEQIA 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122
              A KV   E DQ+  PIL+D  S + N + +I  D LK D  +           +R+I
Sbjct: 68  KR-AGKVFAFEIDQRLLPILEDTLSPYDN-VTVIHKDILKADVTELIGEELKAYEEVRVI 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   +         +S+T++ QKEV ER+ A+  +  YG LS+   + T
Sbjct: 126 ANLPYYVTTPIIMKLLQEGLP---LKSITVMLQKEVAERMAAKPGTKEYGSLSIAVQYFT 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +A  +  +   VF P P V S VI  +    P       +   ++ + +FG+RRKT+  +
Sbjct: 183 QAETVMIVPKTVFVPQPNVDSAVIRLVVREEPPVRVKDEDFFFEVVRASFGQRRKTILNN 242

Query: 241 L---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L         K+ G E  L    I+   R E LSIE+F  +++ L
Sbjct: 243 LQSNLPDGKAKKQGIEAALATTSIDPKRRGETLSIEEFGALSDEL 287


>gi|146319655|ref|YP_001199367.1| dimethyladenosine transferase [Streptococcus suis 05ZYH33]
 gi|146321852|ref|YP_001201563.1| dimethyladenosine transferase [Streptococcus suis 98HAH33]
 gi|145690461|gb|ABP90967.1| Dimethyladenosine transferase [Streptococcus suis 05ZYH33]
 gi|145692658|gb|ABP93163.1| Dimethyladenosine transferase [Streptococcus suis 98HAH33]
 gi|292559272|gb|ADE32273.1| Dimethyladenosine transferase [Streptococcus suis GZ1]
          Length = 302

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K +  + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 13  MRIADK-NVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGA 71

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D   +  N + ++  D LK D     + F N  
Sbjct: 72  LTEFLAENAA-EVLAFEIDDRLIPILADTLGRFDN-VTVVNQDILKTDLQTQIQNFKNPD 129

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      +    ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 130 LPIKVVANLPYYITTSILMHLIESKIP---FSEFVVMMQREVADRISAEPNTKAYGSLSI 186

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 187 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKDEDFFFRVSKASFVHRR 246

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L  A +E ++R E LS+ DF R+++ L +
Sbjct: 247 KTLWNNLTNHFGKSEEVKDKLTQALGMAELEASVRGEALSMADFARLSDSLQE 299


>gi|325264298|ref|ZP_08131029.1| dimethyladenosine transferase [Clostridium sp. D5]
 gi|324030369|gb|EGB91653.1| dimethyladenosine transferase [Clostridium sp. D5]
          Length = 303

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 144/289 (49%), Gaps = 19/289 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y    +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 14  TLGNPQNTI-AVLHRYNFAFQKKFGQNFLIDTHVLDKIIRSAEISRDDMVLEIGPGIGTM 72

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    A KVI +E D+   PIL+D      N + ++ +D LKVD  +     N   P
Sbjct: 73  TQYLAC-AAGKVIAVEIDRALIPILEDTLDGFDN-VTVLNEDILKVDIAELAERENGGRP 130

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++             +S+T++ QKEV ER+     +  YG LS+  
Sbjct: 131 IKVVANLPYYITTPIIMGLFEKHVP---VKSITVMVQKEVAERMQVGPGTKDYGALSLAV 187

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236
            +  K  ++ ++ P+ F P PKV S VI    +  P     +   + +I + +F +RRKT
Sbjct: 188 QYYAKPYIVANVPPNCFMPRPKVGSAVICLERYEKPPVQVDDERLMFRIIRASFNQRRKT 247

Query: 237 LRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L   +K            E  +   G    +R E L++E+F  +TN L+
Sbjct: 248 LANGMKNSPELDYTKEQIEAAIESLGRGAGVRGEALTLEEFAALTNALS 296


>gi|301299614|ref|ZP_07205875.1| dimethyladenosine transferase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852801|gb|EFK80424.1| dimethyladenosine transferase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 297

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/290 (32%), Positives = 150/290 (51%), Gaps = 21/290 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N + + + I+  Y +  KK +GQNFL D+NILK I  ++   +   VIEIG G G LT
Sbjct: 9   IANPTRT-RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALT 67

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118
           + L    A KV+ +E D +  P+L D  S + N +E+I  D LK D E      F     
Sbjct: 68  EQLAKR-ANKVMALEIDDRLLPVLADTLSPYEN-VEVIHQDILKADLEALIAEHFEPGHK 125

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPY I T +L + + +      +E++ ++ QKEV ER+ A   +  YG LSV  
Sbjct: 126 LKLVANLPYYITTPILMHLLDSGI---EFETIVVMMQKEVAERLAANSGTKAYGSLSVAV 182

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKT 236
            +   + + F +   VF P P V S +I           P   +  KK+ + +F  RRK+
Sbjct: 183 QYEMDSEIAFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKS 242

Query: 237 LRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277
           L  +L+ L G++          L  A I+ ++RAE L++ DF  +++ L 
Sbjct: 243 LWNNLQSLYGKDPETKEKMLQALEVADIKQSIRAEKLTVADFINLSDALE 292


>gi|229542292|ref|ZP_04431352.1| dimethyladenosine transferase [Bacillus coagulans 36D1]
 gi|229326712|gb|EEN92387.1| dimethyladenosine transferase [Bacillus coagulans 36D1]
          Length = 295

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 146/282 (51%), Gaps = 20/282 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL+ Y    KK +GQNFL+D NIL+ I +++   +   V+EIG G G LT+ L    
Sbjct: 11  TKAILNRYGFSFKKSLGQNFLIDPNILRNITDTADLTEESGVVEIGPGIGALTEHLARR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANL 125
           ++KV+  E D++  PILKD  + +PN + +I +D LK D  K         + I ++ANL
Sbjct: 70  SKKVVAFEIDKRLAPILKDTLAPYPN-VNVIYEDVLKADVGKVLETEFAGINDIMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++  +++          + ++ QKEV +RI+A   + +YG LS+   +   A 
Sbjct: 129 PYYVTTPIILKFVTGLYP---IRGMVVMLQKEVADRISAVPGTKNYGTLSIAIQYYMTAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSL-- 241
           +   +   VF P P V S V+  +    P     +     ++ + +F +RRKTL  +L  
Sbjct: 186 VAMIVPKTVFMPQPNVDSAVVKLVKRDKPKVEVKDEAFFFQVAKASFAQRRKTLINNLTA 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                  K+    ++L Q  IE + R E LS+E+F  ++N L
Sbjct: 246 GLPGGKDKKETLLSVLEQLKIEPSRRGETLSLEEFAALSNAL 287


>gi|308171933|ref|YP_003918638.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307604797|emb|CBI41168.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
           amyloliquefaciens DSM 7]
 gi|328551743|gb|AEB22235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Bacillus amyloliquefaciens TA208]
 gi|328910003|gb|AEB61599.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
           amyloliquefaciens LL3]
          Length = 293

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 101/294 (34%), Positives = 144/294 (48%), Gaps = 24/294 (8%)

Query: 3   MNNK----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           MNNK        K IL  Y    KK +GQNFL+D NIL +I + +   D   VIEIG G 
Sbjct: 1   MNNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGI 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFN 114
           G LT+ L    A+KV+  E DQ+  PIL D  S + N + II  D LK D     E+ F 
Sbjct: 61  GALTEQLAKR-AKKVVAFEIDQRLLPILNDTLSPYDN-VTIIHHDVLKADVKSVIEEQFQ 118

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
               I + ANLPY + T ++   +         + + ++ QKEV ER+ A  +S  YG L
Sbjct: 119 DCDEIMVTANLPYYVTTPIIMKLLEEHLP---LKGIVVMLQKEVAERMAADPSSKEYGSL 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232
           S+   + T+A  +  +   VF P P V S VI  +    P           ++ + +F +
Sbjct: 176 SIAVQFYTEAKTVMTVPKTVFVPQPNVDSAVIRLLLRDGPAVDVDNESFFFQLIKASFAQ 235

Query: 233 RRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           RRKTL  +L         K+   E +L +  I+   R E+LSIE+F  ++N L 
Sbjct: 236 RRKTLLNNLVNNLPGGKEKKPQIEEVLQETNIDGKRRGESLSIEEFALLSNGLY 289


>gi|90961211|ref|YP_535127.1| dimethyladenosine transferase [Lactobacillus salivarius UCC118]
 gi|119365028|sp|Q1WV73|RSMA_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|90820405|gb|ABD99044.1| Dimethyladenosine transferase [Lactobacillus salivarius UCC118]
 gi|300214137|gb|ADJ78553.1| Ribosomal RNA small subunit methyltransferase A
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S ribosomal RNA
           dimethyladenosine transferase) (16S ribosomal RNA
           dimethylase) [Lactobacillus salivarius CECT 5713]
          Length = 296

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 150/289 (51%), Gaps = 21/289 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N + + + I+  Y +  KK +GQNFL D+NILK I  ++   +   VIEIG G G LT
Sbjct: 8   IANPTRT-RAIMETYGLTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALT 66

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSP 118
           + L    A KV+ +E D +  P+L D  S + N +E++  D LK D      + F     
Sbjct: 67  EQLAKR-ANKVMALEIDDRLLPVLADTLSPYEN-VEVVHQDILKADLKALIAEHFEPGHK 124

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPY I T +L + + +      +E++ ++ QKEV ER+ A   +  YG LSV  
Sbjct: 125 LKLVANLPYYITTPILMHLLDSGI---EFETIVVMMQKEVAERLAANPGTKAYGSLSVAV 181

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKT 236
            +   + + F +   VF P P V S +I           P   +  KK+ + +F  RRK+
Sbjct: 182 QYEMDSEIAFIVPKTVFVPQPNVDSAIIVLNKKKVKPKEPQDEKHFKKLVKGSFMHRRKS 241

Query: 237 LRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           L  +L+ L G++          L  A I+ ++RAE L++ DF  +++ L
Sbjct: 242 LWNNLQSLYGKDPETKEKMLQALEVADIKQSIRAEKLTVADFINLSDAL 290


>gi|326804008|ref|YP_004321826.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650269|gb|AEA00452.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 294

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 146/282 (51%), Gaps = 20/282 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL+ Y++  KK +GQNFL++  IL+K+ +++       VIEIG G G LT+ L    A 
Sbjct: 14  AILNRYQLDAKKSLGQNFLMEPQILEKMVDAADIDQDTDVIEIGPGIGALTEFLCES-AG 72

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127
           +V+  E D +  P+L+     + N L ++  D L+ D      ++F  S  + ++ANLPY
Sbjct: 73  RVLAFEVDDRLLPVLEAELGHYDN-LTVLHQDILEADLNASVSQYFPDSKRLAVVANLPY 131

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++F+++ +D     +  +    Q EV ER+TAQ  +  Y  L+++  +  ++ + 
Sbjct: 132 YITTPIIFHFLESDLEVSDFALM---MQYEVAERLTAQAGTKAYSALTIVLNYYCQSEIA 188

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
             +   VF P PKV S V+H      P   P       K+ + AF  RRKTL  +LK L 
Sbjct: 189 VKVPKTVFKPRPKVDSAVLHLKRRQAPPVKPQNEALFFKVVKGAFAHRRKTLWNNLKSLF 248

Query: 246 G---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                     E  +  AGI+  +RAE L+IEDF  +++ L +
Sbjct: 249 AGQYQEPSDLEAAIEAAGIDPKVRAEQLTIEDFSHLSDALNE 290


>gi|86516031|gb|ABC97666.1| KsgA [Shigella boydii]
          Length = 256

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/259 (34%), Positives = 134/259 (51%), Gaps = 8/259 (3%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQNFL D  ++  I  +     G  ++EIG G   LT+ +      ++ VIE D+   
Sbjct: 1   RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142
             L+        +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S   
Sbjct: 60  ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PKV 
Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175

Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L + GI+  +R
Sbjct: 176 SAVVRLVPHTTMPYPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSAEVLTEMGIDPAMR 235

Query: 261 AENLSIEDFCRITNILTDN 279
           AEN+S+  +C++ N L +N
Sbjct: 236 AENISVAQYCQMANYLAEN 254


>gi|323340527|ref|ZP_08080782.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644]
 gi|323092071|gb|EFZ34688.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644]
          Length = 296

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 155/299 (51%), Gaps = 26/299 (8%)

Query: 3   MNNKSHSL------KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGA 56
           M+N+   +      + I+  Y +  KK +GQNFL DLNILKKI  ++   +   VIEIG 
Sbjct: 1   MSNELPEIASKARTRAIMETYGLTFKKSLGQNFLTDLNILKKIVAAAEVGEEDDVIEIGP 60

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---- 112
           G G LT+ L    A +V+ +E D +  P+L +  S + N ++I++ D LK D ++     
Sbjct: 61  GIGALTEQLAKS-AHQVMALEIDSRLIPVLSETLSPYDN-VKIVEQDVLKADLKELIAQN 118

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           F+    I+++ANLPY I T ++ + +  D     +E++ ++ QKEV +R+ AQ  +  YG
Sbjct: 119 FDGRHKIKLVANLPYYITTPIVMHLLEVDV---DFETIVVMMQKEVADRLAAQPGTKDYG 175

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAF 230
            LSV   +   A + F +   VF P PKV S +I          +P      KK+ +  F
Sbjct: 176 SLSVAVQYEMDAKIAFIVPKTVFMPQPKVDSAIIALNRKDEKPDVPVDEPFFKKMVKGIF 235

Query: 231 GKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             RRK+L  +L+ L G++          L  A IE ++RAE LSI    R+ + L   +
Sbjct: 236 LHRRKSLWNNLQGLYGKDPSTREKLEHALKNAEIEKSVRAERLSISQMVRLADNLFAEK 294


>gi|310825990|ref|YP_003958347.1| hypothetical protein ELI_0367 [Eubacterium limosum KIST612]
 gi|308737724|gb|ADO35384.1| hypothetical protein ELI_0367 [Eubacterium limosum KIST612]
          Length = 285

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 143/288 (49%), Gaps = 16/288 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++ IL+ Y +   K  GQNFL+D NI++KI E+       TV+EIG G G 
Sbjct: 1   MEKLTSPKVIEGILNKYDLHFNKRYGQNFLIDENIVRKIVEAGNVHKNDTVLEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117
           +TQ+L    A KV  +E D++  P+L        N +EIIQ D LK D           +
Sbjct: 61  MTQVLAE-AAGKVYSVEIDKKLIPVLAKTLEDC-NNVEIIQGDILKTDIPGLLRTNLQKN 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P++I+ANLPY + T ++  ++ ++      E +T + QKEVGER+ A+  +  YG L++ 
Sbjct: 119 PLKIVANLPYYVTTPIIMGFLESELP---IEQMTFMIQKEVGERLCAEPGTKAYGSLTIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRK 235
             +  +  + F +   VF P PKV S V+       P       +   +I + +F  RRK
Sbjct: 176 AQFYAETEISFYVPAAVFMPRPKVDSIVVTLKKRAEPAIRVSDKKLFFQIVKASFLNRRK 235

Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           TL   L+           N L + GI   +R E L+ EDF R+ N L+
Sbjct: 236 TLINGLQMNTDYSKERLLNALEKCGIAPGVRGETLTGEDFARLANTLS 283


>gi|212637885|ref|YP_002314405.1| dimethyladenosine transferase [Anoxybacillus flavithermus WK1]
 gi|226729751|sp|B7GFH0|RSMA_ANOFW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|212559365|gb|ACJ32420.1| Dimethyladenosine transferase (rRNA methylation) [Anoxybacillus
           flavithermus WK1]
          Length = 295

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 140/286 (48%), Gaps = 20/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  Y    KK +GQNFL++ NIL +I + +   +   VIEIG G G LT+ L 
Sbjct: 8   PTRTKEILEKYGFSFKKSLGQNFLIEPNILHRIVDFAQLSERTGVIEIGPGIGALTEQLA 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRII 122
              A+KV+  E DQ+  PIL D  S + N + II +D LK D ++     F     I ++
Sbjct: 68  RR-AKKVVAFEIDQRLLPILADTLSPYTN-VSIIHEDILKADVQQVIAEQFTDVDDIMVV 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   ++          + ++ QKEV +R+ A+  +  YG L++   + T
Sbjct: 126 ANLPYYVTTPIIMKLLTDRLP---IRGMVVMLQKEVADRMAAKPGTKDYGSLTIAVQYYT 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
            A  +  +   VF P P V S VI  +    P       +    + + +FG+RRKT+  +
Sbjct: 183 HAETVMHVPRTVFVPKPNVDSAVIRLLKREQPAVSVSNEDFFFAVVRASFGQRRKTILNN 242

Query: 241 L---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L         K+   EN L  AGI+   R E L+I +F  ++  L 
Sbjct: 243 LLNQLPNGKEKKEQIENALANAGIDPKRRGETLAIAEFATLSEQLY 288


>gi|126701147|ref|YP_001090044.1| dimethyladenosine transferase [Clostridium difficile 630]
 gi|254977148|ref|ZP_05273620.1| dimethyladenosine transferase [Clostridium difficile QCD-66c26]
 gi|255094477|ref|ZP_05323955.1| dimethyladenosine transferase [Clostridium difficile CIP 107932]
 gi|255316228|ref|ZP_05357811.1| dimethyladenosine transferase [Clostridium difficile QCD-76w55]
 gi|255518890|ref|ZP_05386566.1| dimethyladenosine transferase [Clostridium difficile QCD-97b34]
 gi|255652069|ref|ZP_05398971.1| dimethyladenosine transferase [Clostridium difficile QCD-37x79]
 gi|260685043|ref|YP_003216328.1| dimethyladenosine transferase [Clostridium difficile CD196]
 gi|260688701|ref|YP_003219835.1| dimethyladenosine transferase [Clostridium difficile R20291]
 gi|306521805|ref|ZP_07408152.1| dimethyladenosine transferase [Clostridium difficile QCD-32g58]
 gi|118600854|sp|Q181C1|RSMA_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115252584|emb|CAJ70427.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) [Clostridium
           difficile]
 gi|260211206|emb|CBA66699.1| dimethyladenosine transferase [Clostridium difficile CD196]
 gi|260214718|emb|CBE07385.1| dimethyladenosine transferase [Clostridium difficile R20291]
          Length = 289

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 144/287 (50%), Gaps = 16/287 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +  ++ K ++  Y     K +GQNFL+D NI+ KI   +    G  +IE+G G G 
Sbjct: 1   MDRLSSHNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           LT+ +  + A KV+ IE D+   PILKD  S   N  E++  D LKVD ++         
Sbjct: 61  LTREMGKI-AEKVVAIEIDRNLIPILKDTLSDLDNT-EVVNQDILKVDIQELVKDKLNGG 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P++++ANLPY I T ++  ++  D        + ++ QKEV +R+ A   +  YG LS+ 
Sbjct: 119 PVKLVANLPYYITTPIVMKFLEEDIP---VTDIVVMVQKEVADRMNAIPGTKDYGALSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRK 235
             +     ++     H+F P P V STVI  H            +   K  + +FG+RRK
Sbjct: 176 VQYYCDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEDIFFKTVKASFGQRRK 235

Query: 236 TLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  SL  LG         +L +A I+   R E LSIE+F  ++NI+
Sbjct: 236 TLLNSLGGLGFLNKDEIREILKEANIDEKRRGETLSIEEFSVLSNII 282


>gi|255102733|ref|ZP_05331710.1| dimethyladenosine transferase [Clostridium difficile QCD-63q42]
 gi|255308554|ref|ZP_05352725.1| dimethyladenosine transferase [Clostridium difficile ATCC 43255]
          Length = 289

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 144/287 (50%), Gaps = 16/287 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +  ++ K ++  Y     K +GQNFL+D NI+ KI   +    G  +IE+G G G 
Sbjct: 1   MDRLSSHNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           LT+ +  + A KV+ IE D+   PILKD  S   N  E++  D LKVD ++         
Sbjct: 61  LTREMGKI-AEKVVAIEIDRNLIPILKDTLSDLDNT-EVVNQDILKVDIQELVKDKLNGG 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P++++ANLPY I T ++  ++  D        + ++ QKEV +R+ A   +  YG LS+ 
Sbjct: 119 PVKLVANLPYYITTPIVMKFLEEDIP---VTDIVVMVQKEVADRMNAIPGTKDYGALSIA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRK 235
             +     ++     H+F P P V STVI  H            +   K  + +FG+RRK
Sbjct: 176 VQYYCDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYDVHNEDIFFKTVKASFGQRRK 235

Query: 236 TLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  SL  LG         +L +A I+   R E LSIE+F  ++NI+
Sbjct: 236 TLLNSLGGLGFLNKDEIREVLKEANIDEKRRGETLSIEEFSVLSNII 282


>gi|149182822|ref|ZP_01861284.1| dimethyladenosine transferase [Bacillus sp. SG-1]
 gi|148849489|gb|EDL63677.1| dimethyladenosine transferase [Bacillus sp. SG-1]
          Length = 292

 Score =  282 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 141/282 (50%), Gaps = 20/282 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL  Y    KK +GQNFL+D NIL+ I E +G  +    IEIG G G LT+ L    
Sbjct: 11  TKEILKKYGFSFKKSLGQNFLIDPNILRNITEYAGLTEKTAAIEIGPGIGALTEHLART- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A KV+  E DQ+  PIL D  S + N + I+ +D LK D     EK       I ++ANL
Sbjct: 70  AGKVLAFEIDQRLLPILADTLSPY-NNITIVNEDVLKADVQEMIEKELADYEDIMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   ++        + + ++ QKEVG+RI A+  +  YG LS+   + T A 
Sbjct: 129 PYYVTTPIILKLLTEGLP---IKGICVMLQKEVGDRIAAKPGTKEYGSLSIAIQYYTTAE 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243
            +  +   VF P P V S VI  +    P       +   K+T+ +F +RRKT+  +L  
Sbjct: 186 TVMIVPKTVFMPQPNVDSAVIRLMKRDKPAAEVDDEDFFFKVTRASFAQRRKTILNNLTS 245

Query: 244 LGGE---------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
              +           L +AG++   R E LSI++F  ++N L
Sbjct: 246 QLPDGKQKKEEILASLEKAGVDPGRRGETLSIQEFALLSNEL 287


>gi|314937300|ref|ZP_07844642.1| dimethyladenosine transferase [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654596|gb|EFS18346.1| dimethyladenosine transferase [Staphylococcus hominis subsp.
           hominis C80]
          Length = 296

 Score =  282 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 145/283 (51%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K +L+ +    KK +GQNFL+D+NI+ KI ++S       +IE+G G G+LT+ L 
Sbjct: 9   PSRTKELLNQFDFNFKKSLGQNFLVDVNIIHKIIDASHIDKSTGIIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122
              A+KV+  E DQ+  P+LK+    + N + II +D LK D       + N    I ++
Sbjct: 69  KS-AKKVLSFEIDQRLIPVLKETLHPYDN-VTIINEDILKADIATAVNMYLNDCDKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  +  YG LS++T + T
Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      ++  K+ + AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQREKPLVSVDDEQAFFKLAKAAFAQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L  A I+   R E LSI+DF R+  
Sbjct: 244 YQNFFKDGKKYKSQIHQWLENANIDPKRRGETLSIQDFARLYE 286


>gi|53805073|ref|YP_113120.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath]
 gi|62900497|sp|Q60B77|RSMA_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|53758834|gb|AAU93125.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath]
          Length = 257

 Score =  282 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 95/260 (36%), Positives = 138/260 (53%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           + +P+K  GQNFL D  ++++I  + G      ++EIG G G LT+ LL  GA  +  IE
Sbjct: 2   RHVPRKRFGQNFLRDPGVIQEIVAAVGPAPSDRLVEIGPGEGVLTRELLQSGA-CLEAIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     LK   +    RL I + DA+K D          +R++ NLPYNI T LLF+ 
Sbjct: 61  LDRDLVAALKRRFAGV-GRLRIHEGDAMKFDLRTIAT-GERLRVVGNLPYNISTPLLFHL 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                     E +  + QKEV +R+ A     HYGRLSV+     +A  +FD+ P  F P
Sbjct: 119 FDQ---IDVIEDMHFMLQKEVVDRLCAGAGDDHYGRLSVMAALYCQAQHLFDVGPECFHP 175

Query: 198 SPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S V+  +PH  P     ++ +  +   AFG+RRKTLR +LK L  E  + +AGI+
Sbjct: 176 QPKVVSAVVRLVPHAVPPDAGMVKQVSAVVVAAFGQRRKTLRNALKGLLDETAMVRAGID 235

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE LS+ D+  ++  L
Sbjct: 236 PGARAEELSLADYVGLSRQL 255


>gi|312870255|ref|ZP_07730386.1| dimethyladenosine transferase [Lactobacillus oris PB013-T2-3]
 gi|311094278|gb|EFQ52591.1| dimethyladenosine transferase [Lactobacillus oris PB013-T2-3]
          Length = 297

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 22/292 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
                + I+  Y I  KK  GQNFL DLN+LK I  ++       VIEIG G G LT+ L
Sbjct: 9   SRTRTRAIMEKYGIHTKKGFGQNFLTDLNVLKNIVSAAEITRDDNVIEIGPGIGALTEQL 68

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIR 120
               A +V+ +E DQ   P+L ++ + + N + ++  D L+ +  +       + S PI+
Sbjct: 69  A-QAAGEVLALEIDQDLIPVLAEVLAPYDN-VTVLNQDVLQANLPELIKQQFTDPSRPIK 126

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I + +L N ++A   P  W ++ ++ QKEV +R+TAQ  +  YG L++   +
Sbjct: 127 VVANLPYYITSPILMNLLAA---PVDWAAICVMMQKEVAQRLTAQPGTKQYGALTLAIEY 183

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTL 237
           +  A + F++S  VF P+P V S ++   P   P+P      + L    +  F  RRK+L
Sbjct: 184 QMTAEIAFNVSRRVFVPAPNVDSAIVVLRPRTTPLPVQPFNKQKLFGFIRGCFAHRRKSL 243

Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +L+   G+          +L    I    R E L++E F  + N L   Q
Sbjct: 244 WNNLQATVGKQPAVKEKMQAILTTLAISPQTRPERLTLEQFIELANALHAAQ 295


>gi|149907524|ref|ZP_01896271.1| dimethyladenosine transferase [Moritella sp. PE36]
 gi|149809194|gb|EDM69123.1| dimethyladenosine transferase [Moritella sp. PE36]
          Length = 272

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 96/279 (34%), Positives = 146/279 (52%), Gaps = 15/279 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+K H             KK  GQNFL D  ++ +I  S     G  +IEIG G G LT
Sbjct: 1   MNDKVH--------LGHTAKKRFGQNFLHDAYVIGQIVASINPRKGENLIEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + +      K+ V+E D+     L +       +LEI Q DA++ DF++    +  +RI 
Sbjct: 53  EPVAD-CLDKMTVVELDRDLAERL-EQHPVLSKKLEIHQADAMRFDFKQLIKPNMKMRIF 110

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI T L+F+           + +  + QKEV +R+ A  N+  YGRL+V+T +  
Sbjct: 111 GNLPYNISTPLMFHLFEFHE---DIQDMHFMLQKEVVQRLAASHNTKSYGRLTVMTQYYC 167

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQS 240
           + T + ++ P  F P+PKV S V+   PH         L+ L  + + AF +RRKT+R S
Sbjct: 168 RVTPVLEVGPEAFRPAPKVDSAVVRLEPHTVLPHPAKSLKVLNHVVRNAFNQRRKTIRNS 227

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           LK++   + +   GI  +LR ENL++E++  I N +TDN
Sbjct: 228 LKKVISVDDIAALGINVSLRPENLTLENYVTIANFVTDN 266


>gi|228476220|ref|ZP_04060923.1| dimethyladenosine transferase [Staphylococcus hominis SK119]
 gi|228269705|gb|EEK11204.1| dimethyladenosine transferase [Staphylococcus hominis SK119]
          Length = 296

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 145/283 (51%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K +L+ +    KK +GQNFL+D+NI+ KI ++S       +IE+G G G+LT+ L 
Sbjct: 9   PSRTKELLNQFDFNFKKSLGQNFLVDVNIIHKIIDASHIDKSTGIIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122
              A+KV+  E DQ+  P+LK+    + N + II +D LK D       + N    I ++
Sbjct: 69  KS-AKKVLSFEIDQRLIPVLKETLHPYDN-VTIINEDILKADIATAVNMYLNDCDKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  +  YG LS++T + T
Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      ++  K+ + AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQREKPLVSVDDEQAFFKLAKAAFAQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L  A I+   R E LSI+DF R+  
Sbjct: 244 YQNFFKDGKKYKSKIHQWLENADIDPKRRGETLSIQDFARLYE 286


>gi|284803073|ref|YP_003414938.1| dimethyladenosine transferase [Listeria monocytogenes 08-5578]
 gi|284996214|ref|YP_003417982.1| dimethyladenosine transferase [Listeria monocytogenes 08-5923]
 gi|284058635|gb|ADB69576.1| dimethyladenosine transferase [Listeria monocytogenes 08-5578]
 gi|284061681|gb|ADB72620.1| dimethyladenosine transferase [Listeria monocytogenes 08-5923]
          Length = 295

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 144/283 (50%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L      
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-TN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                         L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGD 290


>gi|300310043|ref|YP_003774135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Herbaspirillum seropedicae SmR1]
 gi|300072828|gb|ADJ62227.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           protein [Herbaspirillum seropedicae SmR1]
          Length = 260

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 94/264 (35%), Positives = 133/264 (50%), Gaps = 7/264 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D  +L  I  S        ++EIG G   +T +LL  G R + V+E
Sbjct: 2   KHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLE-GLRHLHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFN 136
            D+     LK        RL +   DALK DF          +R++ NLPYNI + LLF+
Sbjct: 61  LDRDLVERLKKRFDAA--RLTVHSADALKFDFSTIPVPEGRKLRVVGNLPYNISSPLLFH 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                   P  +    + QKEV ER+ A+  S  YGRLSV+  WR    ++F + P  F 
Sbjct: 119 L---AEIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFD 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P PKV S ++  IP   P+ C    L+++  +AF +RRK +R  +  L  E+ L Q GI+
Sbjct: 176 PPPKVDSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGID 235

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
              R E + +E F  + N+L   Q
Sbjct: 236 PQARPEAVPMEQFVALANLLAARQ 259


>gi|313625508|gb|EFR95235.1| dimethyladenosine transferase [Listeria innocua FSL J1-023]
          Length = 295

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N + ++ +D LK D      E+F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                         L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPALKPRKEELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290


>gi|16799304|ref|NP_469572.1| dimethyladenosine transferase [Listeria innocua Clip11262]
 gi|27151588|sp|Q92F79|RSMA_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|16412646|emb|CAC95460.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
           innocua Clip11262]
          Length = 295

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 21/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N + ++ +D LK D      E+F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+      E   ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                         L+  GI+   R E L I +F +++N L D
Sbjct: 248 FPALKPRKEELIEGLNAIGIDLIRRGETLDIPEFAKLSNFLAD 290


>gi|224475635|ref|YP_002633241.1| dimethyladenosine transferase [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254807884|sp|B9DLD0|RSMA_STACT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|222420242|emb|CAL27056.1| ribosomal RNA adenine dimethylase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 296

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 149/286 (52%), Gaps = 20/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y+   KK +GQNFL+D+NI++KI ++S   +   VIE+G G G+LT+ L 
Sbjct: 9   PTRTRALLDKYQFDFKKSLGQNFLIDVNIIQKIIDASNIDERTGVIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122
              A+KV+  E DQ+  P+L+D  S + N + +I +D LK D  +      +    I ++
Sbjct: 69  KH-AKKVVAFEIDQRLIPVLEDTLSDYDN-VTVINEDILKADVVEAVQTHLSDCDKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +S        +   ++ QKEVGER+ A+  +  YG LS++  + T
Sbjct: 127 ANLPYYITTPILLNLMSKSLP---IDGYVVMMQKEVGERLNAEIGTKAYGSLSIVAQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    PI      +   K+T+ AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKTVFMPPPNVDSIVVKLMKRQAPIVAVDDEDQFFKMTKAAFSQRRKTIANN 243

Query: 241 LKRLG---------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            + L           +  L   GI+   R E LSI++F  + N L 
Sbjct: 244 YQSLFFDGKQKKYIIKTWLEDGGIDPRRRGETLSIKEFANLFNNLK 289


>gi|153956353|ref|YP_001397118.1| dimethyladenosine transferase [Clostridium kluyveri DSM 555]
 gi|219856668|ref|YP_002473790.1| hypothetical protein CKR_3325 [Clostridium kluyveri NBRC 12016]
 gi|146349211|gb|EDK35747.1| KsgA [Clostridium kluyveri DSM 555]
 gi|219570392|dbj|BAH08376.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 281

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 102/283 (36%), Positives = 150/283 (53%), Gaps = 14/283 (4%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN   S K I+  Y     K +GQNFL+D ++L+ I E +       VIEIG G G LT
Sbjct: 1   MNNL--STKEIVEKYNFRFSKNLGQNFLIDNSVLQDILEGTDINKNDFVIEIGPGVGTLT 58

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A+KV  IE D     ILK+    +PN  E+I  D LK +F +     S I+I+
Sbjct: 59  KELLKR-AKKVCAIELDSDLIAILKEELKHYPN-FELIHKDVLKTNFNEIIKDESSIKIV 116

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++   ++       +++LT++ QKEVGER+ ++ N   YG LS+L  +  
Sbjct: 117 ANLPYYITTPIISKILNNKYN---FKTLTIMIQKEVGERMISEPNCKRYGALSLLVQYYC 173

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240
              ++  +SP+ F PSPKV S VI      NP       +   +I + +F  RRKTL  +
Sbjct: 174 DVEVLRKVSPYAFIPSPKVESIVIKLTKLNNPRVKIKSEDLFFRIIRCSFNMRRKTLWNA 233

Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK L       E    ++ I+   R E LSIE+F  +++ + +
Sbjct: 234 LKALKLSREYIEKAFDKSRIDPKRRGETLSIEEFGLLSDCIYE 276


>gi|331092538|ref|ZP_08341360.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330400759|gb|EGG80362.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 292

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 146/291 (50%), Gaps = 19/291 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  IL  Y+   +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 7   TLGNPQNTI-EILQKYQFSFQKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTM 65

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    AR+V+ +E D+   PIL D  S   N + II +D LKVD        N   P
Sbjct: 66  TQYLA-SAAREVVAVEIDKALIPILSDTLSGFDN-VTIINNDVLKVDIGALAQEHNNGRP 123

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I+++ANLPY I T ++     ++      ES+T++ QKEV ER+     +  YG LS+  
Sbjct: 124 IKVVANLPYYITTPIIMGLFESNVP---IESITVMVQKEVAERMQVGPGTKDYGALSLAV 180

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKT 236
            +  K  ++ ++ P+ F P PKV S VI    H  P       + + KI + +F +RRKT
Sbjct: 181 QYYAKPYIVANVPPNCFMPRPKVASAVIRLERHKEPPVSVVDEKLMFKIIRASFNQRRKT 240

Query: 237 LRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L   L                + + G    +R E L++++F  +++ ++  
Sbjct: 241 LANGLNNSPEIHLPKDVITEAIKELGKGAGVRGEVLTLQEFATLSDNISKR 291


>gi|226938959|ref|YP_002794030.1| dimethyladenosine transferase [Laribacter hongkongensis HLHK9]
 gi|254807871|sp|C1D9C2|RSMA_LARHH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226713883|gb|ACO73021.1| KsgA [Laribacter hongkongensis HLHK9]
          Length = 262

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 92/259 (35%), Positives = 133/259 (51%), Gaps = 9/259 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           + IPKK  GQNFL D  I+  I  +  +  G  V+EIG G G LT+ LL     ++ V+E
Sbjct: 3   RHIPKKRFGQNFLQDAFIIHSIVAAVDARPGDVVVEIGPGLGALTRPLLRALP-QLHVVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L       P RL I + DAL  DF    +   P++++ NLPYNI T LLF+ 
Sbjct: 62  IDRDIIARLAAEFP--PERLVIHEGDALAFDFGALAHE-QPLKLVGNLPYNISTPLLFHL 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
               T+      +  + QKEV +R+ A      YGRL+V+  +R     + D+ P  F P
Sbjct: 119 ---ATYADRVTDMHFMLQKEVVDRMVADPGCADYGRLTVMLQYRFAMERLIDVPPESFDP 175

Query: 198 SPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S V+  IPH   P P   E  L  +  +AF +RRKTLR +L+    ++     GI
Sbjct: 176 PPKVDSAVVRMIPHAELPWPADDEENLSALVAQAFAQRRKTLRNNLRGWLDDDDFAALGI 235

Query: 256 ETNLRAENLSIEDFCRITN 274
           +   R E L++ +F  ++N
Sbjct: 236 DPQRRPETLTLREFVLLSN 254


>gi|121997814|ref|YP_001002601.1| dimethyladenosine transferase [Halorhodospira halophila SL1]
 gi|166221671|sp|A1WVT7|RSMA_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|121589219|gb|ABM61799.1| dimethyladenosine transferase [Halorhodospira halophila SL1]
          Length = 265

 Score =  281 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 9/256 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P+K  GQNFL D  +++++  +    +G T++EIG G G LT+ LL      +  +E 
Sbjct: 3   HRPRKRFGQNFLRDPAVIQRMVTAIAPREGETLLEIGPGEGALTEPLLARLG-TLTAVEL 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   P L++  +     L +I+ DAL +D  +       +R++ NLPYN+ T +LF+ +
Sbjct: 62  DRDLAPRLQERFAPA---LRVIEGDALALDPAELAPAQGRLRVVGNLPYNVSTPILFHLL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +A       E L LL Q+EV +R+ A       GRLSV+  +R +    F++    FFP+
Sbjct: 119 AAAD---VIEDLHLLLQREVVDRMVAPPGGKTRGRLSVMVQYRCRVERCFNVPAGAFFPA 175

Query: 199 PKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S+ +  +PH        +   L+++   AFG RRKTLR SLK L        AG++
Sbjct: 176 PKVMSSFVRLVPHRPLPARAQDEAWLQEVVTAAFGGRRKTLRNSLKGLVTAQAFEAAGVD 235

Query: 257 TNLRAENLSIEDFCRI 272
              RAE LS+E F R+
Sbjct: 236 PGARAETLSVEAFVRL 251


>gi|311070689|ref|YP_003975612.1| dimethyladenosine transferase [Bacillus atrophaeus 1942]
 gi|310871206|gb|ADP34681.1| dimethyladenosine transferase [Bacillus atrophaeus 1942]
          Length = 292

 Score =  281 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 20/283 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL  Y    KK +GQNFL+D NIL +I + +G  +   VIEIG G G LT+ L    
Sbjct: 11  TKEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A++V+  E DQ+  PILKD  S + N + +I  D LK D     E+ F+    I ++ANL
Sbjct: 70  AKQVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVRTVIEEQFHDCDEIMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   +  +      + + ++ QKEV ER+ A  +S  YG LS+   + T+A 
Sbjct: 129 PYYVTTPIIMKLLEENLP---LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAK 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSL-- 241
            +  +   VF P P V S VI  +    P           ++ + +F +RRKTL  +L  
Sbjct: 186 TVMTVPKTVFVPQPNVDSAVIRLLLREGPAVDVVNEAFFFQLIKASFAQRRKTLLNNLVN 245

Query: 242 -------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                  K+   E +L +  I+   R E LSI++F  ++N L 
Sbjct: 246 NLPQGKEKKSIIEEVLKETQIDGKRRGEALSIDEFAALSNGLY 288


>gi|134093647|ref|YP_001098722.1| dimethyladenosine transferase [Herminiimonas arsenicoxydans]
 gi|226732588|sp|A4G256|RSMA_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|133737550|emb|CAL60593.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Herminiimonas
           arsenicoxydans]
          Length = 255

 Score =  281 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 93/260 (35%), Positives = 136/260 (52%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D  +L  I  +       T++EIG G   +T++LL  G  ++ V+E
Sbjct: 2   KHIPRKRFGQNFLTDDGVLHNIILAIDPQPQDTMVEIGPGLAAMTRLLLD-GVNQMHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFN 136
            D+     LK      P +L I   DAL+ DF        S +R++ NLPYNI + LLF+
Sbjct: 61  LDRDLVERLKKTFD--PKKLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFH 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                   P  +    + QKEV ER+ A+  S  YGRLSV+  WR    +MF + P  F 
Sbjct: 119 LAEMA---PHVQDQHFMLQKEVVERMVAEPGSKTYGRLSVMLQWRYHMELMFIVPPTAFD 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S ++  IP   P+PC    L+++  +AF +RRK +R  L  +  E  L +AGI 
Sbjct: 176 PPPRVESAIVRMIPIEKPLPCDQTKLEQVVLKAFSQRRKVIRNCLAGMFSEADLIEAGIN 235

Query: 257 TNLRAENLSIEDFCRITNIL 276
             +R E +S+  +  + N L
Sbjct: 236 PQMRPETISLAQYVALANRL 255


>gi|313889811|ref|ZP_07823453.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121856|gb|EFR44953.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 290

 Score =  281 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL +      N + +I  D LK D     + F N  
Sbjct: 60  LTEFLAEQAA-EVMAFEIDDRLLPILAETLRDFDN-IRVINQDILKADLQTQIQGFKNPE 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAKPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++     + P+      +   ++ +  F  RR
Sbjct: 175 AVQYYMAAKVSFIVPRTVFVPAPNVDSAILKMERRVEPLIKVQDEDFFFRVAKVGFIHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  AGI+ N+R E L+IE+F ++ + L  
Sbjct: 235 KTLWNNLTSHFGKSEETKKKLEEALELAGIKANIRGEALTIEEFGKLADALKS 287


>gi|330878396|gb|EGH12545.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 268

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             ++   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQFQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLGSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+E D+   PIL    +  PN   + Q DALK DF         +R++ NLPYNI T L+
Sbjct: 62  VVELDKDLIPILNSQFASKPN-FNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLI 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A      +GRLS++  +  +   +F++ P  
Sbjct: 121 FHLLQNAS---LIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGA 177

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S ++  +P+   P P      L+++ +EAF +RRKTLR +L+ L   + +  
Sbjct: 178 FNPPPKVDSAIVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLRLLLSSDEITA 237

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
           +G++ +LR E L +  F R+ + L++ 
Sbjct: 238 SGVDGSLRPEQLDLAAFVRLADTLSEK 264


>gi|187927497|ref|YP_001897984.1| dimethyladenosine transferase [Ralstonia pickettii 12J]
 gi|309779801|ref|ZP_07674556.1| dimethyladenosine transferase [Ralstonia sp. 5_7_47FAA]
 gi|187724387|gb|ACD25552.1| dimethyladenosine transferase [Ralstonia pickettii 12J]
 gi|308921378|gb|EFP67020.1| dimethyladenosine transferase [Ralstonia sp. 5_7_47FAA]
          Length = 281

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 125/269 (46%), Gaps = 11/269 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+    R + V
Sbjct: 9   HQGHQARKRFGQNFLVDDGVIHAIVAAIDPKPDDVLVEIGPGLGALTVPLMER-VRTLQV 67

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+       +RL +   DAL  DF        P+RI+ NLPYNI + LLF
Sbjct: 68  VELDRDLVARLQQRFG---DRLIVHAGDALAFDFGSLQEAGRPLRIVGNLPYNISSPLLF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     T+         + QKEV +R+ A   S  + RLSV+   R    ++ D+ P  F
Sbjct: 125 HL---ATFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSF 181

Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            P PKV S V+  IP         P  L +L  +   AF +RRK LR +L  L       
Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDLRALGTVVTMAFSQRRKVLRNTLGALRDVIDFE 241

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280
             G +   RAE +S+EDF  + N L  N+
Sbjct: 242 ALGFDLGRRAEEVSVEDFVAVANALPANR 270


>gi|319786166|ref|YP_004145641.1| dimethyladenosine transferase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464678|gb|ADV26410.1| dimethyladenosine transferase [Pseudoxanthomonas suwonensis 11-1]
          Length = 257

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 129/259 (49%), Gaps = 8/259 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             PKK +GQNFL D + +++I ++     G  V+EIG G G LT  LL      + VIE 
Sbjct: 5   HTPKKSLGQNFLHDASYIERIVQAIDPRPGDRVVEIGPGQGALTLPLLRR-HGALTVIEF 63

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L ++++    +LEII  D L+VD          I++  NLPYNI + +LF+ +
Sbjct: 64  DRDLVGPLAEMAAPV-GQLEIIHRDVLQVDLAALA-AGGKIKLAGNLPYNISSPILFHAL 121

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV +R+ A   S  YGRLSV+     +   +F + P  F P+
Sbjct: 122 DHAAA---ITDMVFMLQKEVVDRMGAGPGSKVYGRLSVMLQAYCQVQPLFVVPPGAFRPA 178

Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  +P           +    + + AFG+RRKTLR +L+ +        AG+ 
Sbjct: 179 PKVDSAVVRLVPRDPATIHIADRDRFAHVVRAAFGQRRKTLRNALRDVCSPEQFEAAGVS 238

Query: 257 TNLRAENLSIEDFCRITNI 275
            + RAE + +  F R+ N 
Sbjct: 239 ADDRAEQVDVAGFVRLANA 257


>gi|317126783|ref|YP_004093065.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522]
 gi|315471731|gb|ADU28334.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522]
          Length = 292

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 139/283 (49%), Gaps = 18/283 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  Y    KK +GQNFL+D N+LK+I  ++       VIEIG G G LT+ L 
Sbjct: 9   PKKTKAILDKYGFSFKKSLGQNFLIDTNVLKRIVAAANVSQSTGVIEIGPGIGALTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRII 122
              A++V+  E DQ+  PILK+  S + +  +II  D LK D +K     F  +  + ++
Sbjct: 69  KE-AKRVVAFEIDQRLLPILKETLSAYEHT-KIIHQDVLKADVQKVIKDEFEENEELAVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +L   +          ++ ++ QKEV ERI A+ NS +YG LS+   +  
Sbjct: 127 ANLPYYVTTPILMKLLEEKLP---VRTIVVMIQKEVAERIAAKPNSKNYGSLSIAAQYYA 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
            A  +F +   VF P P V S ++       P           +I + +F +RRKT+  +
Sbjct: 184 DAETVFTVPKTVFVPQPNVDSAILRLSIREKPPITVKDEAFFFEIIRASFAQRRKTILNN 243

Query: 241 LKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L            E +L    I+   R E LS+E+F  +++ L
Sbjct: 244 LAHHFSTLSKQTIEEILQSINIDPRRRGEALSMEEFGVLSDNL 286


>gi|294496912|ref|YP_003560612.1| dimethyladenosine transferase [Bacillus megaterium QM B1551]
 gi|294346849|gb|ADE67178.1| dimethyladenosine transferase [Bacillus megaterium QM B1551]
          Length = 292

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 141/285 (49%), Gaps = 20/285 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
            +  K IL  Y    KK +GQNFL+D NIL +I + +   +    IEIG G G LT+ L 
Sbjct: 8   PNRTKEILKKYGFTFKKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLA 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A+KV+  E DQ+  PIL D  S + N  ++I  D LK D     E+ F     + ++
Sbjct: 68  KR-AKKVLAFEIDQRLLPILADTLSPYSNA-KVIHQDVLKADLKGTLEQEFENIEDLMVV 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +L   +           + ++ QKEV +RI A+  +  YG LS+   + T
Sbjct: 126 ANLPYYVTTPILMKLLEEQIP---VRGIVVMLQKEVADRIAAKPGTKEYGSLSIAIQYYT 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240
           +A  +  +   VF P P V S VI  +    P     +     ++ + +FG+RRKT+  +
Sbjct: 183 EAETVMIVPKTVFNPQPNVDSAVIRLLRRPKPAVEVQDEAFFFQVVRASFGQRRKTILNN 242

Query: 241 L---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L         K+   E  L  A I+   R E LSI++F ++++ L
Sbjct: 243 LVNNLPNGKQKKADIEQALSTAEIDPKRRGETLSIQEFGKLSDQL 287


>gi|295702279|ref|YP_003595354.1| dimethyladenosine transferase [Bacillus megaterium DSM 319]
 gi|294799938|gb|ADF37004.1| dimethyladenosine transferase [Bacillus megaterium DSM 319]
          Length = 292

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 141/285 (49%), Gaps = 20/285 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
            +  K IL  Y    KK +GQNFL+D NIL +I + +   +    IEIG G G LT+ L 
Sbjct: 8   PNRTKEILKKYGFTFKKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLA 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A+KV+  E DQ+  PIL D  S + N  ++I  D LK D     E+ F     + ++
Sbjct: 68  KR-AKKVLAFEIDQRLLPILADTLSPYSNA-KVIHQDVLKADLKGMLEQEFENIEDLMVV 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +L   +           + ++ QKEV ERI A+  +  YG LS+   + T
Sbjct: 126 ANLPYYVTTPILMKLLEEQIP---VRGIVVMLQKEVAERIAAKPGTKEYGSLSIAIQYYT 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQS 240
           +A  +  +   VF P P V S VI  +    P     +     ++ + +FG+RRKT+  +
Sbjct: 183 EAETVMIVPKTVFNPQPNVDSAVIRLLRRPKPAVEVQDEAFFFQVVRASFGQRRKTILNN 242

Query: 241 L---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L         K+   E  L  A I+   R E LSI++F ++++ L
Sbjct: 243 LVNNLPNGKQKKADIEQALSTAEIDPKRRGETLSIQEFGKLSDQL 287


>gi|297717804|gb|ADI50045.1| dimethyladenosine transferase [Candidatus Odyssella
           thessalonicensis L13]
          Length = 281

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/276 (40%), Positives = 167/276 (60%), Gaps = 6/276 (2%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +   ++K  +  Y ++ KK +GQNFL ++ I++KIA S+G L  +TV+EIG GPG LT+ 
Sbjct: 4   DHLATVKATVEQYGLMAKKSLGQNFLFNMEIVRKIARSAGCLKEVTVLEIGPGPGGLTRA 63

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL  GA++V+ IE D +    LK++      +L+IIQ DAL +  +     S PI+I+AN
Sbjct: 64  LLEAGAQEVVAIEHDPRCIIALKELVDAAEGKLQIIQADALTISPQDLL-PSRPIKIVAN 122

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+GT+LL  W+          S+TL+FQKEV  RI AQ  +  YGRL+VL  + T+ 
Sbjct: 123 LPYNVGTQLLIRWLH---CLDNIVSMTLMFQKEVALRIVAQPKTADYGRLTVLAQYLTQP 179

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           T +FD+ P  F P PKV S+++H +P          L  L+KIT  AFG+RRK +R SL 
Sbjct: 180 TKVFDLPPGAFSPPPKVKSSIVHLVPKVLSEQDLALLPYLEKITHAAFGQRRKMIRSSLS 239

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            +  E+ +  A +    RAE L++E++  +  IL D
Sbjct: 240 AVLTEDQIQAANVAVTARAEELALENYIELARILKD 275


>gi|19745394|ref|NP_606530.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS8232]
 gi|209558786|ref|YP_002285258.1| dimethyladenosine transferase [Streptococcus pyogenes NZ131]
 gi|306828033|ref|ZP_07461298.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782]
 gi|27151569|sp|Q8P2N8|RSMA_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|19747502|gb|AAL97029.1| putative dimethyladenosine transferase [Streptococcus pyogenes
           MGAS8232]
 gi|209539987|gb|ACI60563.1| Dimethyladenosine transferase [Streptococcus pyogenes NZ131]
 gi|304429749|gb|EFM32793.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782]
          Length = 290

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 235 KTLWNNLTSHFGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287


>gi|229828784|ref|ZP_04454853.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM
           14600]
 gi|229793378|gb|EEP29492.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM
           14600]
          Length = 290

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 150/293 (51%), Gaps = 18/293 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       S   +L  Y    +K  GQNFL+D +IL+ I +++       ++EIG G G 
Sbjct: 1   MAGLASPGSTIAVLEKYGFSFQKKYGQNFLIDRHILEGIVDAAQISREDFILEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           LTQ L   G R+V+ +E D++  PIL D  S + N +E+I  D LK+D        N S 
Sbjct: 61  LTQYLCEAG-REVLAVELDRKLIPILADTLSSY-NNVEVICHDVLKLDLSGLIAEKNASR 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI+++ANLPY I T ++ +   +       ES+T++ QKE+ +R+     S  YG LS+ 
Sbjct: 119 PIKLVANLPYYITTPIIMSLFESHLP---LESITIMVQKELADRMQEGPGSKDYGALSLA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRK 235
             +  K  +MF + P  F P PKV S VI    H + P+    E+ L ++ + +F +RRK
Sbjct: 176 VQYYAKPEVMFQVPPSAFIPRPKVGSAVIRLTCHKSCPVEVSDEAYLFRVIRASFNQRRK 235

Query: 236 TLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           TL   LK              ++ + G+   +R E L+++ F  ++N L + +
Sbjct: 236 TLTNGLKNAPDIRLPKEQITEVIEEMGLPATVRGEMLTLKQFAELSNRLRERE 288


>gi|113461695|ref|YP_719764.1| dimethyladenosine transferase [Haemophilus somnus 129PT]
 gi|170718610|ref|YP_001783811.1| dimethyladenosine transferase [Haemophilus somnus 2336]
 gi|123132270|sp|Q0I5C3|RSMA_HAES1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028810|sp|B0URM7|RSMA_HAES2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|112823738|gb|ABI25827.1| dimethyladenosine transferase [Haemophilus somnus 129PT]
 gi|168826739|gb|ACA32110.1| dimethyladenosine transferase [Haemophilus somnus 2336]
          Length = 281

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/272 (34%), Positives = 141/272 (51%), Gaps = 13/272 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D NI++ I  +        ++EIG G G LT+ +      ++ V
Sbjct: 6   HLGHTARKRFGQNFLHDNNIIQNIVMAIYPQKEQFLVEIGPGLGALTEPVAE-KVERLTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------NISSPIRIIANLPYNI 129
           IE D+     L+     H  +L +I+ DA++ +FE+ +        +  +R+  NLPYNI
Sbjct: 65  IELDRDLAERLRHHPFLHQ-KLNVIEYDAMQFNFEQLYIDENLAEKNQKLRVFGNLPYNI 123

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+           + +  + QKEV +R+ A  NS  YGRL+++  +  +   + +
Sbjct: 124 STPLMFHLFKYHA---IIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYFCQVLPVLE 180

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P+PKV S V+  IPH   P P   L  L ++T +AF +RRKTLR +L  L   
Sbjct: 181 VPPTAFKPAPKVESAVVRLIPHKELPYPVKDLYWLNRVTTQAFNQRRKTLRNALSTLFSA 240

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             L    I+   RAENLSI D+ R+ N L DN
Sbjct: 241 EKLTALAIDLEARAENLSIADYARLANYLADN 272


>gi|15674442|ref|NP_268616.1| dimethyladenosine transferase [Streptococcus pyogenes M1 GAS]
 gi|71910036|ref|YP_281586.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005]
 gi|27151597|sp|Q9A1I0|RSMA_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|13621537|gb|AAK33337.1| putative dimethyladenosine transferase [Streptococcus pyogenes M1
           GAS]
 gi|71852818|gb|AAZ50841.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005]
          Length = 290

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 235 KTLWNNLTSHFGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287


>gi|312865682|ref|ZP_07725906.1| dimethyladenosine transferase [Streptococcus downei F0415]
 gi|311098803|gb|EFQ57023.1| dimethyladenosine transferase [Streptococcus downei F0415]
          Length = 284

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 142/284 (50%), Gaps = 20/284 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL  +    KK  GQNFL D NIL+KI +++     + VIEIG G G LT+ L    
Sbjct: 2   TRAILERHGFTFKKSFGQNFLTDTNILQKIVDTTEIDQNVNVIEIGPGIGALTEFLAEQA 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A +V+  E D +  PIL D      N + +I +D LK D     + F N + PI+++ANL
Sbjct: 62  A-EVMTFEIDDRLIPILADTLRDFDN-VTVINEDILKSDLQTQIKNFANPNLPIKVVANL 119

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L + I +      +    ++ QKEV  RI+A+ N+  YG LS+   +   A 
Sbjct: 120 PYYITTPILMHLIESKIP---FAEFVVMMQKEVANRISAEPNTKAYGSLSIAVQYYMSAK 176

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR 243
           + F +   VF P+P V S ++       P+      +    + + +F  RRKTL  +L  
Sbjct: 177 VAFIVPRTVFVPAPNVDSAILKMTRRPAPLIAVQDEDFFFDVAKASFVHRRKTLWNNLTN 236

Query: 244 LGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
             G+           L  A ++ N+R E LSI+DF R+ + L D
Sbjct: 237 RFGKEEATKSKLQAALEMAELKPNIRGEALSIQDFGRLADALLD 280


>gi|323128061|gb|ADX25358.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 290

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQIQIKQFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 235 KTLWNNLTSHFGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287


>gi|312898803|ref|ZP_07758191.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359]
 gi|310619965|gb|EFQ03537.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359]
          Length = 285

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/276 (34%), Positives = 138/276 (50%), Gaps = 13/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ I+  + +   K  GQNFL+  +++K IA ++   +G  V+EIG G G LTQ L    
Sbjct: 13  VRYIVKRFNLRMSKKWGQNFLIRPDVVKNIAIAADIGEGDEVLEIGPGIGTLTQALAETK 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  +E D +  PIL      + N + II  D LK+D  K  N  S   + ANLPY I
Sbjct: 73  A-SVTAVEIDDRLLPILDKTLEDYEN-VRIIHGDILKIDINKEMNERS-FTVCANLPYYI 129

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   +           + ++ QKEV ER+TA+  S  YG LSV   + TK    FD
Sbjct: 130 TTPIIMRLLEERLP---IRKMVVMVQKEVAERMTAKPGSRIYGALSVAVQYYTKPRCEFD 186

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           ISP  F P P VTSTV+       P       +   ++ + AF +RRKTL  +LK  G  
Sbjct: 187 ISPQSFLPPPAVTSTVVSMEVRTEPAVAVKDEKLFFRVVKFAFAQRRKTLLNALKGGGVP 246

Query: 248 N-----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 +L  +GI+ + R E LS+++F  I +   +
Sbjct: 247 TEEASCMLETSGIDGSRRGETLSLQEFASIADSWYE 282


>gi|296329543|ref|ZP_06872029.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305672740|ref|YP_003864411.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153286|gb|EFG94149.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305410983|gb|ADM36101.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 292

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 20/283 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K IL  Y    KK +GQNFL+D NIL +I + +   +   VIEIG G G LT+ +    
Sbjct: 11  TKEILKKYCFSFKKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQIAKR- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANL 125
           A+KV+  E DQ+  PILKD  S + N + +I  D LK D     E+ F     I ++ANL
Sbjct: 70  AKKVVAFEIDQRLLPILKDTLSPYDN-VTVIHQDVLKADVKSVIEEQFQDCDEIMVVANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + T ++   +         + + ++ QKEV ER+ A  +S  YG LS+   + T+A 
Sbjct: 129 PYYVTTPIIMKLLEEHLP---LKGIVVMLQKEVAERMAADPSSKEYGSLSIAVQFYTEAK 185

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQS--- 240
            +  +   VF P P V S VI  I    P           ++ + +F +RRKTL  +   
Sbjct: 186 TVMTVPKTVFVPQPNVDSAVIRLILRDGPAVDVENEAFFFQLIKASFAQRRKTLLNNLVN 245

Query: 241 ------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                  ++   E +L +  I+   R E+LSIE+F  ++N L 
Sbjct: 246 NLPEGKAQKSTIEQVLEKTNIDGKRRGESLSIEEFAALSNGLY 288


>gi|86516099|gb|ABC97700.1| KsgA [Shigella flexneri]
          Length = 256

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/259 (34%), Positives = 133/259 (51%), Gaps = 8/259 (3%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQNFL D  ++  I  +     G  ++EIG G   LT+ +      ++ VIE D+   
Sbjct: 1   RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142
             L+        +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S   
Sbjct: 60  ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PKV 
Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175

Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+  +R
Sbjct: 176 SAVVRLVPHATMPHPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMR 235

Query: 261 AENLSIEDFCRITNILTDN 279
           AEN+S+  +C++ N L +N
Sbjct: 236 AENISVAQYCQMANYLAEN 254


>gi|86516027|gb|ABC97664.1| KsgA [Shigella boydii]
 gi|86516033|gb|ABC97667.1| KsgA [Shigella boydii]
 gi|86516035|gb|ABC97668.1| KsgA [Shigella boydii]
 gi|86516037|gb|ABC97669.1| KsgA [Shigella boydii]
 gi|86516039|gb|ABC97670.1| KsgA [Shigella boydii]
 gi|86516043|gb|ABC97672.1| KsgA [Shigella boydii]
 gi|86516047|gb|ABC97674.1| KsgA [Shigella boydii]
 gi|86516051|gb|ABC97676.1| KsgA [Shigella boydii]
 gi|86516055|gb|ABC97678.1| KsgA [Shigella boydii]
 gi|86516057|gb|ABC97679.1| KsgA [Shigella dysenteriae]
 gi|86516059|gb|ABC97680.1| KsgA [Shigella dysenteriae]
 gi|86516061|gb|ABC97681.1| KsgA [Shigella dysenteriae]
 gi|86516063|gb|ABC97682.1| KsgA [Shigella dysenteriae]
 gi|86516065|gb|ABC97683.1| KsgA [Shigella dysenteriae]
 gi|86516067|gb|ABC97684.1| KsgA [Shigella dysenteriae]
 gi|86516069|gb|ABC97685.1| KsgA [Shigella dysenteriae]
 gi|86516073|gb|ABC97687.1| KsgA [Shigella dysenteriae]
 gi|86516075|gb|ABC97688.1| KsgA [Shigella dysenteriae]
 gi|86516077|gb|ABC97689.1| KsgA [Shigella dysenteriae]
 gi|86516079|gb|ABC97690.1| KsgA [Shigella dysenteriae]
 gi|86516081|gb|ABC97691.1| KsgA [Shigella flexneri]
 gi|86516083|gb|ABC97692.1| KsgA [Shigella flexneri]
 gi|86516085|gb|ABC97693.1| KsgA [Shigella flexneri]
 gi|86516087|gb|ABC97694.1| KsgA [Shigella flexneri]
 gi|86516093|gb|ABC97697.1| KsgA [Shigella flexneri]
 gi|86516097|gb|ABC97699.1| KsgA [Shigella flexneri]
 gi|86516101|gb|ABC97701.1| KsgA [Escherichia coli]
 gi|86516103|gb|ABC97702.1| KsgA [Escherichia coli]
 gi|86516105|gb|ABC97703.1| KsgA [Escherichia coli]
          Length = 256

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/259 (34%), Positives = 133/259 (51%), Gaps = 8/259 (3%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQNFL D  ++  I  +     G  ++EIG G   LT+ +      ++ VIE D+   
Sbjct: 1   RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142
             L+        +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S   
Sbjct: 60  ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PKV 
Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175

Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+  +R
Sbjct: 176 SAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMR 235

Query: 261 AENLSIEDFCRITNILTDN 279
           AEN+S+  +C++ N L +N
Sbjct: 236 AENISVAQYCQMANYLAEN 254


>gi|152979807|ref|YP_001352110.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille]
 gi|226732589|sp|A6SV13|RSMA_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|151279884|gb|ABR88294.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille]
          Length = 255

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/260 (35%), Positives = 137/260 (52%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D  +L  I  +       T++EIG G   +T++LL  G +++ V+E
Sbjct: 2   KHIPRKRFGQNFLTDDTVLYNIIRAIDPQPQDTMVEIGPGLAAMTRLLLE-GVQQMHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFN 136
            D+     LK      P RL I   DAL+ DF        S +R++ NLPYNI + LLF+
Sbjct: 61  LDRDLVERLKKSFD--PKRLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFH 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                   P  +    + QKEV ER+ A+  S  YGRLSV+  WR    +MF + P  F 
Sbjct: 119 LAEMA---PHVQDQHFMLQKEVVERMVAEPGSKVYGRLSVMLQWRYHMELMFVVPPTAFD 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S ++  IP   P+PC    L+++  +AF +RRK +R  L  +  E+ L + GI+
Sbjct: 176 PPPRVESAIVRMIPLAQPLPCDQAKLEQVVLKAFSQRRKVIRNCLAGMFAESDLLEVGID 235

Query: 257 TNLRAENLSIEDFCRITNIL 276
             LR E + +  +  + N L
Sbjct: 236 PQLRPETIPLAQYVALANRL 255


>gi|199597856|ref|ZP_03211282.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
           rhamnosus HN001]
 gi|258509566|ref|YP_003172317.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG]
 gi|199591292|gb|EDY99372.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
           rhamnosus HN001]
 gi|257149493|emb|CAR88466.1| Dimethyladenosine transferase [Lactobacillus rhamnosus GG]
 gi|259650833|dbj|BAI42995.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG]
          Length = 294

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/279 (32%), Positives = 138/279 (49%), Gaps = 18/279 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  +    +K +GQNFL D  IL+KI  ++   +   VIEIG G G LTQ L    A 
Sbjct: 13  AILKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLADQ-AH 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPY 127
           +V+ +E D +  PIL +  + +PN   ++ +D LK +  +     F+ +  ++++ANLPY
Sbjct: 72  QVVALEIDDRLLPILAETLADYPNT-TVVNEDVLKTNLTELVATHFDGNHTLKVVANLPY 130

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T +L + + A        S+T++ QKEV  R++A   S  YG LS+           
Sbjct: 131 YITTPILLHLLRAHLP---LHSMTVMMQKEVAARLSAVPGSKDYGSLSIAVQLVADVATA 187

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +S H F P+P V S ++       P+      ES  ++ + AF  RRKTL  +L  L 
Sbjct: 188 FTVSRHAFVPAPNVDSAIVTLTQRSEPLATVQSPESFDRLVRGAFASRRKTLWNNLVALF 247

Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           G+         L  A I    RAE L+I DF R+   L 
Sbjct: 248 GKPNKDAIRTALSVAEIAPETRAEQLAIADFARLDEALR 286


>gi|331006688|ref|ZP_08329965.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989]
 gi|330419496|gb|EGG93885.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989]
          Length = 274

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/266 (34%), Positives = 137/266 (51%), Gaps = 11/266 (4%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           +    +K  GQNFL D NI+ +I  S  +     ++EIG G G +TQ L+     ++ VI
Sbjct: 7   FAHKARKRFGQNFLTDQNIINRIVTSINAKPSDRLVEIGPGQGAITQQLIQACP-QLQVI 65

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   PIL    +++P    I Q DAL+ DF        P+RI+ NLPYNI T L+F+
Sbjct: 66  ELDRDLIPILLAQFAKYPE-FAIHQQDALRFDFATLMVEKQPLRIVGNLPYNISTPLIFH 124

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S        + +  + QKEV  R+ A     +YGRLS++  +  +   +F + P  F 
Sbjct: 125 LLSYQD---RIQDMHFMLQKEVVNRLVATAGEKNYGRLSIMVQYYCETEHLFAVPPECFD 181

Query: 197 PSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLL---- 250
           P PKV S ++   PH         +  L  +   AF +RRKTLR +LK+L   + L    
Sbjct: 182 PQPKVDSAIVRLQPHKKLPYVANNVAHLSHLVNLAFQQRRKTLRNTLKQLADGDALQIAA 241

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
            +  +  +LR ENLS ED+  ++N L
Sbjct: 242 EKLDLNLSLRPENLSTEDYVNLSNTL 267


>gi|94993613|ref|YP_601711.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10750]
 gi|118600904|sp|Q1J8J4|RSMA_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94547121|gb|ABF37167.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10750]
          Length = 298

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 9   MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 67

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     ++F N  
Sbjct: 68  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 125

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 126 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 182

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 183 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVEDEDFFFRVSRLSFVHRR 242

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 243 KTLWNNLTSHFGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295


>gi|71902882|ref|YP_279685.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180]
 gi|94989731|ref|YP_597831.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10270]
 gi|251783338|ref|YP_002997643.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|118600903|sp|Q1JIN6|RSMA_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365851|sp|Q48VC6|RSMA_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71801977|gb|AAX71330.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180]
 gi|94543239|gb|ABF33287.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10270]
 gi|242391970|dbj|BAH82429.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 298

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 9   MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 67

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     ++F N  
Sbjct: 68  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 125

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 126 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 182

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 183 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRR 242

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 243 KTLWNNLTSHFGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295


>gi|254787084|ref|YP_003074513.1| dimethyladenosine transferaseS-adenosylmethionine-6-N',N'-adenosyl
           dimethyltransferase [Teredinibacter turnerae T7901]
 gi|237686969|gb|ACR14233.1| dimethyladenosine transferaseS-adenosylmethionine-6-N',N'-adenosyl
           dimethyltransferase [Teredinibacter turnerae T7901]
          Length = 267

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/262 (33%), Positives = 135/262 (51%), Gaps = 7/262 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            +   KK  GQNFL D  ++  I  +    +G  ++EIG G G +T +LL      + VI
Sbjct: 7   LQHQAKKRFGQNFLQDQGVINAIVRAVHPQEGDNLVEIGPGQGAITGLLLEHCPN-LQVI 65

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   P L    ++     +I Q DAL  DF    ++  P+RI+ NLPYNI T L+F+
Sbjct: 66  ELDKDLIPGLLAQFAKFRG-FKIHQTDALNFDFSSLSSVEHPLRIVGNLPYNISTPLIFH 124

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S   +      +  + QKEV ER+ A     +YGRLS++  +  +   +F++ P  F 
Sbjct: 125 LLS---FREQVRDMHFMLQKEVVERLAASPGEKNYGRLSIMAQYFCQVENLFEVPPECFI 181

Query: 197 PSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P+PKV S ++  +PH         +   + + + AF +RRKTLR SLK    +       
Sbjct: 182 PAPKVDSAIVRLVPHKELPVKAHNMARFETLVKTAFAQRRKTLRNSLKSFEIDFASIDVK 241

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           I+   RAENLS+E +  ++N L
Sbjct: 242 IDLAQRAENLSLEQYVNLSNAL 263


>gi|86516029|gb|ABC97665.1| KsgA [Shigella boydii]
          Length = 256

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/259 (34%), Positives = 134/259 (51%), Gaps = 8/259 (3%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQNFL D  ++  I  +     G  ++EIG G   LT+ +      +++VIE D+   
Sbjct: 1   RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLMVIELDRDLA 59

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142
             L+        +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S   
Sbjct: 60  ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PKV 
Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175

Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+  +R
Sbjct: 176 SAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMR 235

Query: 261 AENLSIEDFCRITNILTDN 279
           AEN+S+  +C++ N L +N
Sbjct: 236 AENISVAQYCQMANYLAEN 254


>gi|164688862|ref|ZP_02212890.1| hypothetical protein CLOBAR_02510 [Clostridium bartlettii DSM
           16795]
 gi|164602066|gb|EDQ95531.1| hypothetical protein CLOBAR_02510 [Clostridium bartlettii DSM
           16795]
          Length = 288

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 144/287 (50%), Gaps = 16/287 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +   + K +++ +     K +GQNFL+D N++ +I E +   +   +IE+G G G 
Sbjct: 1   MDRLSSHRATKEVVNKHNFKFSKSLGQNFLIDDNVIDRILEGARLSETDRIIEVGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           LT+ +  + A  V+ IE D+   PILK+  +   N +E++ +D LKVD +   N      
Sbjct: 61  LTREMGKV-AENVVAIEIDKTLIPILKETLADLDN-VEVVNEDILKVDVQGLINEKLNGG 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P++++ANLPY I T ++  ++  D        + ++ QKEV +R+ A+ ++  YG LSV 
Sbjct: 119 PVKLVANLPYYITTPIVMKFLEEDIP---VTDIVVMVQKEVADRMNAKPSTKDYGALSVA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRK 235
             +     ++     H+F P P V S VI          +    +   K  + +FG+RRK
Sbjct: 176 VQYYCDTEIVAKAPRHMFVPQPNVDSIVIGLHVRDEKKYVVDNEDIFFKTVKASFGQRRK 235

Query: 236 TLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  SL  LG          L  A I+   R E LSI++F  ++N +
Sbjct: 236 TLLNSLGGLGFLSKDEIREALQAANIDEKRRGETLSIDEFANLSNEI 282


>gi|222153745|ref|YP_002562922.1| dimethyladenosine transferase [Streptococcus uberis 0140J]
 gi|254807888|sp|B9DVT4|RSMA_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|222114558|emb|CAR43508.1| dimethyladenosine transferase [Streptococcus uberis 0140J]
          Length = 290

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 88/293 (30%), Positives = 148/293 (50%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + + +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-RAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRSVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N +++I  D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLRDFDN-VQVINQDILKSDLQSQIKQFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P++++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPLKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++ +  F  RR
Sbjct: 175 AVQYYMTAKVAFIVPKTVFVPAPNVDSAILKMVRRPEPLIEVTDEDFFFRVAKVGFIHRR 234

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G+           L  A I+ ++R E L+I  + ++ + L +
Sbjct: 235 KTLWNNLTSHFGKTEEIKTKLTQALELADIKPSIRGEALTIPQYGKLADALKE 287


>gi|94987854|ref|YP_595955.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429]
 gi|94991737|ref|YP_599836.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS2096]
 gi|118600901|sp|Q1JDL6|RSMA_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600902|sp|Q1JNI8|RSMA_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94541362|gb|ABF31411.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429]
 gi|94545245|gb|ABF35292.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS2096]
          Length = 298

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 9   MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 67

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     ++F N  
Sbjct: 68  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 125

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 126 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 182

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 183 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKDEDFFFRVSRLSFVHRR 242

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 243 KTLWNNLTSHFGKSEDIKAKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295


>gi|322412722|gb|EFY03630.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 290

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMAAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEVKNEDFFFRVSRLSFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 235 KTLWNNLTSHFGKSEDIKAKLEKGLALANIKPSIRGEALSIQDFGKLADALKE 287


>gi|314932715|ref|ZP_07840085.1| dimethyladenosine transferase [Staphylococcus caprae C87]
 gi|313654545|gb|EFS18297.1| dimethyladenosine transferase [Staphylococcus caprae C87]
          Length = 296

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 142/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+ KI ++S   D   VIE+G G G+LT+ L 
Sbjct: 9   PSRTRALLDQYGFNFKKSLGQNFLVDVNIINKIIDASQIDDTTGVIEVGPGMGSLTEQLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122
              A+KV+  E DQ+  P+LKD  + + N + II +D LK +  K      +    I ++
Sbjct: 69  K-NAKKVMSFEIDQRLIPVLKDTLAPYDN-VTIINEDILKANISKAVHTHLSDCEKIMVV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A   +  YG LS++  + T
Sbjct: 127 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNATVGTKAYGSLSIVAQYYT 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +     +      E+  K+ + AF +RRKT+  +
Sbjct: 184 ETSKVLTVPKSVFMPPPNVDSIVVKLMQREEHLVQVDNEEAFFKLAKAAFAQRRKTINNN 243

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +         + L  A I+   R E L+I DF  +  
Sbjct: 244 YQNFFKDGKKHKASILDWLESAEIDPKRRGETLTIHDFANLYE 286


>gi|139473080|ref|YP_001127795.1| dimethyladenosine transferase [Streptococcus pyogenes str.
           Manfredo]
 gi|62900490|sp|Q5XDX4|RSMA_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221708|sp|A2RCH2|RSMA_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|134271326|emb|CAM29544.1| dimethyladenosine transferase [Streptococcus pyogenes str.
           Manfredo]
          Length = 290

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEIKDEDFFFRVSRLSFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 235 KTLWNNLTSHFGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 287


>gi|254496674|ref|ZP_05109537.1| dimethyladenosine transferase [Legionella drancourtii LLAP12]
 gi|254354102|gb|EET12774.1| dimethyladenosine transferase [Legionella drancourtii LLAP12]
          Length = 256

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 135/263 (51%), Gaps = 10/263 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  P+K  GQNFL   +++  I  S        ++EIG G G LT+ LL    +++  IE
Sbjct: 2   RHSPRKRFGQNFLQSRHVIDDILRSINPQLEDNLLEIGPGLGALTEPLLRRL-KRMTAIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L ++      +L +I  DAL VD+ +F    + +R+I NLPYNI T LL + 
Sbjct: 61  IDTDLQKYLSEL-PIAQGKLNLIAADALTVDYSQF---GAKLRVIGNLPYNISTPLLIHL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    + PF E +  + QKEV ER+ AQ  +  YGRL+V+  +      +F + P  F P
Sbjct: 117 L---RFAPFIEDMHFMLQKEVVERMAAQPGTKDYGRLTVMLQYHCDVDYLFAVPPEAFEP 173

Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S V+  +P+         +E L+++   AF  RRKTL  +LK +     L   GI
Sbjct: 174 RPKVDSAVVRLVPYEKSPFESVAVEQLERLVASAFAMRRKTLNNNLKGIISAEQLLDLGI 233

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           +   R E +S+ ++ ++   +++
Sbjct: 234 DGGRRPEQISVAEYVQLAKFVSN 256


>gi|89094173|ref|ZP_01167116.1| dimethyladenosine transferase [Oceanospirillum sp. MED92]
 gi|89081648|gb|EAR60877.1| dimethyladenosine transferase [Oceanospirillum sp. MED92]
          Length = 268

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 6/265 (2%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+++I  S    +  T++EIG G G LT+ LL   A ++  IE 
Sbjct: 8   HKARKRFGQNFLHDHGIIRRIIRSIAPHETDTMVEIGPGLGALTEELLAE-AGELDAIEL 66

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   PIL+     + ++  I + DA+K DF +       +RI+ NLPYNI T+L+F+ +
Sbjct: 67  DRDLPPILRTKFFSYGDKFRIHEADAMKFDFTQLRRSEKRLRIVGNLPYNISTQLIFHLL 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S        E +  + QKEV +R+ A     +YGRL ++  +  K   +F + P  F P+
Sbjct: 127 SHAD---DVEDMHFMLQKEVVDRMAAGPGENNYGRLGIMAQYFCKVESLFVVPPGAFNPA 183

Query: 199 PKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S +I   P+          E L+ + + AF  RRKTLR +LK L     +    I+
Sbjct: 184 PKVDSAIIRLTPYRELPYVADEVEQLQTVVRTAFNMRRKTLRNNLKPLLSAEEIEALNID 243

Query: 257 TNLRAENLSIEDFCRITNILTDNQD 281
             LR E L I DF  I+N L+  + 
Sbjct: 244 PGLRPEKLPISDFVAISNYLSKKKS 268


>gi|86516089|gb|ABC97695.1| KsgA [Shigella flexneri]
 gi|86516091|gb|ABC97696.1| KsgA [Shigella flexneri]
          Length = 256

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/259 (34%), Positives = 133/259 (51%), Gaps = 8/259 (3%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQNFL D  ++  I  +     G  ++EIG G   LT+ +      ++ VIE D+   
Sbjct: 1   RFGQNFLNDHFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142
             L+        +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S   
Sbjct: 60  ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PKV 
Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175

Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+  +R
Sbjct: 176 SAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMR 235

Query: 261 AENLSIEDFCRITNILTDN 279
           AEN+S+  +C++ N L +N
Sbjct: 236 AENISVAQYCQMANYLAEN 254


>gi|254517379|ref|ZP_05129436.1| dimethyladenosine transferase [gamma proteobacterium NOR5-3]
 gi|219674217|gb|EED30586.1| dimethyladenosine transferase [gamma proteobacterium NOR5-3]
          Length = 270

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 131/261 (50%), Gaps = 7/261 (2%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+ ++  +    +   ++EIG G G LT  L+  G  ++  IE 
Sbjct: 10  HQARKRFGQNFLRDPGIIDRLERAIAPAESQHLVEIGPGLGALTDALVQSGC-QLDAIEL 68

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L    S HPN   +   DAL+ DF         +R++ NLPYNI T L+F  +
Sbjct: 69  DRDLVTPLLAAFSIHPN-FTLHSADALRFDFGSVVRGDEQLRVVGNLPYNISTPLIFRLL 127

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              T     + +  + Q EV +R+T+Q  S H+GRL ++  +  +  ++F++ P  F P 
Sbjct: 128 EQAT---IIKDMHFMLQLEVVQRLTSQPGSKHWGRLGIMAQYLCRTELLFEVPPEAFDPP 184

Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S +I   PH +P    C    L+K+ + AF +RRKTLR +LK +     +   GI+
Sbjct: 185 PKVQSAIIRLTPHASPLFPDCNAAVLEKVVKAAFAQRRKTLRNNLKGMLSNEAIEGLGID 244

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE L +  F  +   L 
Sbjct: 245 PGCRAETLELSQFVALAKALE 265


>gi|190572863|ref|YP_001970708.1| dimethyladenosine transferase [Stenotrophomonas maltophilia K279a]
 gi|190010785|emb|CAQ44394.1| putative dimethyladenosine transferase [Stenotrophomonas
           maltophilia K279a]
          Length = 267

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 133/258 (51%), Gaps = 10/258 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D + + KI  +    DG  ++EIG G G +T  LL +   K+ VIE D+
Sbjct: 16  AKKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDR 74

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L   +++    L I+  D L+VDF +      PIR++ NLPYNI + +LF+ +  
Sbjct: 75  DLIAPL-TAAAEPLGELTIVHRDVLRVDFTELA-AGQPIRLVGNLPYNISSPILFHALEH 132

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PK
Sbjct: 133 AA---VIRDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCQVTSLFVVPPGAFRPPPK 189

Query: 201 VTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           V S V+  +P  +P    +   +   ++ + AFG+RRKTLR +L  +        AG+  
Sbjct: 190 VDSAVVRLVPR-DPATISISDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFVAAGVRP 248

Query: 258 NLRAENLSIEDFCRITNI 275
           + RAE L + +F  + N 
Sbjct: 249 DARAEQLDVAEFIALANA 266


>gi|15672672|ref|NP_266846.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491189|ref|YP_003353169.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|27151600|sp|Q9CHN8|RSMA_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|12723599|gb|AAK04788.1|AE006302_6 kasugamycin dimethyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281374930|gb|ADA64448.1| Dimethyladenosine transferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|326406235|gb|ADZ63306.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 294

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 102/294 (34%), Positives = 153/294 (52%), Gaps = 23/294 (7%)

Query: 1   MTMNNK---SHSLK--TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55
           MT NN    S+ ++   IL  +    KK  GQNFL D NIL KI +++     + VIEIG
Sbjct: 1   MTENNIDRISNIIRTQDILRRHDFNFKKKFGQNFLTDHNILTKITQTAELSKEVNVIEIG 60

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEK 111
            G G+LTQ LL   A +V+  E D+   PIL++  + + N   ++  D LKVD     +K
Sbjct: 61  PGIGSLTQYLLEEAA-EVMAFEIDKSLIPILEETMAPYDN-FTLVSADILKVDLLSEIQK 118

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           F N + PI+++ANLPY I T +L + I +      +    ++ QKEV +RI A   +  Y
Sbjct: 119 FKNPNLPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRIAASPKTKAY 175

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEA 229
           G LS+   +  +A++ F +   VF P+P V S ++  +    P+      E   K    +
Sbjct: 176 GSLSIAVQYYMEASVAFIVPRTVFIPAPNVDSAILKMVRREAPLVEVEDEEWFFKTMHSS 235

Query: 230 FGKRRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           F  RRKTL  +L+   G+        LL QA I   +R E LSIE+F ++ + L
Sbjct: 236 FVHRRKTLMNNLQAAFGKESKPEIEKLLAQAEISPTIRGEALSIEEFAKLADAL 289


>gi|254520467|ref|ZP_05132523.1| dimethyladenosine transferase [Clostridium sp. 7_2_43FAA]
 gi|226914216|gb|EEH99417.1| dimethyladenosine transferase [Clostridium sp. 7_2_43FAA]
          Length = 281

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 86/272 (31%), Positives = 135/272 (49%), Gaps = 12/272 (4%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            ++  Y     K +GQNFL+D ++ + I   +   +   VIEIG G G LT  LL   A+
Sbjct: 10  ELVKKYNFKFSKSLGQNFLIDDSVPRDIVAGAEVDENDLVIEIGPGVGTLTAQLL-NKAK 68

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV+ IE D    PIL      +P +  +I  DALKV+F +       ++++ANLPY + T
Sbjct: 69  KVVAIELDNDLIPILNQEIGDNP-KFTLIHKDALKVNFNEIIGEEKSVKLVANLPYYVTT 127

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   +        ++SLT++ QKEV ER+ A   +  YG LS+L  +     ++  + 
Sbjct: 128 PIIVKLLKE---GYNFKSLTIMIQKEVAERMNANPGNKDYGSLSLLVQYYCNTKIVRRVP 184

Query: 192 PHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG---- 245
           P  F P PKV S VI       P       +    I + +F  RRKTL   +K +G    
Sbjct: 185 PQCFIPRPKVDSIVIRLDKLSEPKVKVENEKLFFDIIRNSFNMRRKTLWNGVKNIGLSKE 244

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             E   ++A I+   R E L+IE+F  +++ +
Sbjct: 245 NLELAFNEANIDPKRRGETLTIEEFATLSDKI 276


>gi|241662027|ref|YP_002980387.1| dimethyladenosine transferase [Ralstonia pickettii 12D]
 gi|240864054|gb|ACS61715.1| dimethyladenosine transferase [Ralstonia pickettii 12D]
          Length = 281

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 126/269 (46%), Gaps = 11/269 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+    R + V
Sbjct: 9   HQGHQARKRFGQNFLVDDGVIHAIVAAIDPKPDDVLVEIGPGLGALTVPLMER-VRTLQV 67

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+       +RL +   DAL  DF     +  P+RI+ NLPYNI + LLF
Sbjct: 68  VELDRDLVARLQKRFG---DRLVVHAGDALAFDFGALQEVDRPLRIVGNLPYNISSPLLF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     T+         + QKEV +R+ A   S  + RLSV+   R    ++ D+ P  F
Sbjct: 125 HL---ATFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSF 181

Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            P PKV S V+  IP         P  + +L  +   AF +RRK LR +L  L       
Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDMRALGTVVTMAFSQRRKVLRNTLGALRDVVDFD 241

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280
             G + + RAE + +EDF  + N L  N+
Sbjct: 242 ALGFDLSRRAEEVPVEDFVAVANALPANR 270


>gi|92113048|ref|YP_572976.1| dimethyladenosine transferase [Chromohalobacter salexigens DSM
           3043]
 gi|119365016|sp|Q1QZ31|RSMA_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91796138|gb|ABE58277.1| dimethyladenosine transferase [Chromohalobacter salexigens DSM
           3043]
          Length = 282

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 136/282 (48%), Gaps = 20/282 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+N+  +            +K  GQNFL D  ++ +I           +IEIG G G LT
Sbjct: 12  MSNRPPA---------HQARKRFGQNFLRDTGVIDRIVRVIAPRSDQRLIEIGPGQGALT 62

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSP 118
           + LL      + VIE D+   P L+     +P+   I + DAL+ DF            P
Sbjct: 63  EPLLD-AVGALEVIELDRDLIPGLRVQFFNYPD-FVIHEGDALQFDFAALAAEGETPGKP 120

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           +R+I NLPYNI T L+F+ ++A         +  + Q+EV ER+ A   S  +GRLSV+T
Sbjct: 121 LRVIGNLPYNISTPLIFHLLTARGA---IADMHFMLQREVVERLAATPGSAAWGRLSVMT 177

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236
            +  +   +F +    F P PKV S ++  IPH  P     +      I +EAFG+RRKT
Sbjct: 178 QYHCRVDNLFVVPAEAFTPRPKVESAIVRLIPHDEPPHVAHDEALFGDIVREAFGQRRKT 237

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LR +LK    +       I+   R + LS+E+  RI N + +
Sbjct: 238 LRNNLKTRLDDTAWAALDIDPGRRPQTLSVEELVRIANHVAE 279


>gi|194364446|ref|YP_002027056.1| dimethyladenosine transferase [Stenotrophomonas maltophilia R551-3]
 gi|194347250|gb|ACF50373.1| dimethyladenosine transferase [Stenotrophomonas maltophilia R551-3]
          Length = 267

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 85/258 (32%), Positives = 134/258 (51%), Gaps = 10/258 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D + + KI  +    DG  ++EIG G G +T  LL +   K+ VIE D+
Sbjct: 16  AKKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDR 74

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L   +++    L I+  D L+VDF +  +   PIR++ NLPYNI + +LF+ +  
Sbjct: 75  DLIAPL-TAAAEPLGELTIVHRDVLRVDFTELAD-GQPIRLVGNLPYNISSPILFHALEH 132

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  +GRLSV+     + T +F + P  F P PK
Sbjct: 133 AA---VIRDMHFMLQKEVVDRMAAGPGSKVFGRLSVMLQAYCEVTSLFVVPPGAFRPPPK 189

Query: 201 VTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           V S V+  +P  +P    +   +   ++ + AFG+RRKTLR +L  +        AG+  
Sbjct: 190 VDSAVVRLVPR-DPATINIRDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFAAAGVRP 248

Query: 258 NLRAENLSIEDFCRITNI 275
           + RAE L + +F  + N 
Sbjct: 249 DARAEQLDVAEFIALANA 266


>gi|299820686|ref|ZP_07052575.1| dimethyladenosine transferase [Listeria grayi DSM 20601]
 gi|299817707|gb|EFI84942.1| dimethyladenosine transferase [Listeria grayi DSM 20601]
          Length = 295

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 146/281 (51%), Gaps = 21/281 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NILK+IAE++G       +EIG G G LT+ L    A+
Sbjct: 13  EILKKYHFLFKKSLGQNFLIDSNILKRIAETAGLNAESNAMEIGPGIGALTEHLA-RNAK 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S +PN ++II  D LK D      E F +  +P++++ANLP
Sbjct: 72  EVVAFEIDQRLIPILDDTLSPYPN-VKIIHQDVLKADVRAALTENFSDPEAPLKVVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +         +S+T + QKEV +RI+A   +  YG LS+   +  +A +
Sbjct: 131 YYVTTPIILKLLHEGIP---VDSMTFMLQKEVADRISAVPGTKSYGSLSIAIQYYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S +IH      P+          ++T+ AF +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAIIHLKRREKPLAHVENETFFFEVTRAAFAQRRKTLWNNLVSK 247

Query: 245 GGENL---------LHQAGIETNLRAENLSIEDFCRITNIL 276
             E           L   G++   R E +SI +F  +++ L
Sbjct: 248 FPELKENKEELETELTARGLDLKRRGETMSIPEFAVLSDFL 288


>gi|83588925|ref|YP_428934.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073]
 gi|119365033|sp|Q2RME8|RSMA_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83571839|gb|ABC18391.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073]
          Length = 288

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 145/281 (51%), Gaps = 20/281 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            ++    ++P+K  GQNFL+D NI++KIA ++    G TV+EIG G G LTQ L    A 
Sbjct: 12  ALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAAR-AG 70

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSPIRIIA 123
            VI IE D++ F  L++  +   N + ++  DALKVDF++                +++A
Sbjct: 71  LVIAIEIDRELFAALEETLAGRDN-VRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I T +L + +++         L L+ Q EVG R+ A+     YG LSV+  + T+
Sbjct: 130 NLPYYITTPILMHLLTSR---FRIAELVLMVQAEVGYRMLARPGGKDYGALSVVVQYYTE 186

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL 241
             ++  +   VF+P P+V S V+       P+      +   ++ + AF +RRKT+  +L
Sbjct: 187 PAVVLKVPRTVFYPRPEVDSLVLKLTCRTRPVVQVEDEDFFFRVVRAAFNQRRKTILNAL 246

Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             LG E       L  AGI+   R E L +E+F  I+  L 
Sbjct: 247 GSLGFEKSKIMEALAGAGIDPRRRGETLGMEEFASISRTLQ 287


>gi|209964862|ref|YP_002297777.1| dimethyladenosine transferase [Rhodospirillum centenum SW]
 gi|209958328|gb|ACI98964.1| dimethyladenosine transferase [Rhodospirillum centenum SW]
          Length = 276

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/280 (36%), Positives = 156/280 (55%), Gaps = 8/280 (2%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ +++ + +  +K +GQ+FLLDLN+ ++I   +G L G+ V+E+G GPG 
Sbjct: 1   MADLSHLPPLRDVIAEHGLGARKALGQHFLLDLNLTRRIVREAGDLSGVAVVEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L+   AR+V+ +E+D +F   L D+ +    RL +++ DAL VD      + +P  
Sbjct: 61  LTRALVESAAREVVAVERDSRFAAALADVMAAADGRLRLVEADALTVDPVDL--VPAPRA 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +I+NLPYN+GT LL  W+        + SLTL+FQKEV ERI A+  +  YGRL+V+  W
Sbjct: 119 VISNLPYNVGTPLLIGWLKRIA---EYRSLTLMFQKEVAERIVARPRTEAYGRLAVMCQW 175

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
                ++FD+    F P P+V S + H  P   P       +++ +   AFG+RRK LR 
Sbjct: 176 LADCRILFDVPARAFTPPPRVDSAIAHLTPRARPADDPDFRTMEALVAAAFGQRRKMLRA 235

Query: 240 SLKRLG--GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SLK +    E LL   GI    RAE + +  F  +   L 
Sbjct: 236 SLKSVVREPEPLLESVGIAPTSRAEEVDVAGFVTLAKALR 275


>gi|116511486|ref|YP_808702.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107140|gb|ABJ72280.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 294

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 102/294 (34%), Positives = 155/294 (52%), Gaps = 23/294 (7%)

Query: 1   MTMNNK---SHSLK--TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55
           MT NN    S+ ++   IL  +    KK  GQNFL D NIL KI E++     + VIEIG
Sbjct: 1   MTENNIDRISNIIRTQDILRRHDFNFKKKFGQNFLTDHNILTKITETADLSKEVNVIEIG 60

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEK 111
            G G+LTQ LL   A +V+  E D+   PIL++  + + N   ++ +D LKVD     +K
Sbjct: 61  PGIGSLTQYLLEEAA-EVMAFEIDKSLIPILEETMAPYDN-FTLVSEDILKVDLLSEIQK 118

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           F N + PI+++ANLPY I T +L + I +      +    ++ QKEV +RI A+  +  Y
Sbjct: 119 FKNPNLPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRIAARPKTKAY 175

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEA 229
           G LS+   +  +A++ F +   VF P+P V S ++  +    P+      E   K    +
Sbjct: 176 GSLSIAVQYYMEASVAFIVPRTVFIPAPNVDSAILKMVRREEPLVEVEDEEWFFKTMHSS 235

Query: 230 FGKRRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           F  RRKTL  +++   G+        LL QA I   +R E LSIE+F ++ + L
Sbjct: 236 FVHRRKTLMNNMQAAFGKESKPEIEKLLAQAEISPTIRGEALSIEEFAKLADAL 289


>gi|299143369|ref|ZP_07036449.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517854|gb|EFI41593.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 288

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 16/283 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M    K   L  +L+ Y     K +GQNFL+D NI++KI +S+       V+EIG G G 
Sbjct: 1   MERLYKPARLIELLNKYGFRFSKSLGQNFLIDGNIVRKIVDSAEISSNDNVLEIGPGVGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           LT+ L  L A+KV+ IE D     +LK+        ++II +D LK D +KF        
Sbjct: 61  LTEELC-LRAKKVVSIEIDNHLKELLKESLP--YENVKIIFNDVLKTDLKKFTEQEFGGE 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             +++ANLPY + T ++   I  D      ES+T++ QKEV  R +A  ++  YG LSV 
Sbjct: 118 TFKVVANLPYYVTTPIISKLIEEDLN---IESITVMIQKEVANRFSASPSTKDYGSLSVF 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             + +     F +  +VF P P V S V++     +      + L K+ + AF KRRKTL
Sbjct: 175 IQFYSDVKYEFTVPKNVFMPKPNVDSAVVNLKIKKDLPDIDRDKLFKVVRAAFSKRRKTL 234

Query: 238 RQSLKRLG----GENLLHQA---GIETNLRAENLSIEDFCRIT 273
             +L   G       +L       I+   RAE LS E+F  ++
Sbjct: 235 INALSSYGFNIDKNEILKALSISNIDEKRRAETLSSEEFIVLS 277


>gi|86516023|gb|ABC97662.1| KsgA [Shigella boydii]
 gi|86516025|gb|ABC97663.1| KsgA [Shigella boydii]
 gi|86516041|gb|ABC97671.1| KsgA [Shigella boydii]
 gi|86516045|gb|ABC97673.1| KsgA [Shigella boydii]
 gi|86516049|gb|ABC97675.1| KsgA [Shigella boydii]
 gi|86516053|gb|ABC97677.1| KsgA [Shigella boydii]
 gi|86516071|gb|ABC97686.1| KsgA [Shigella dysenteriae]
          Length = 256

 Score =  278 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 88/259 (33%), Positives = 133/259 (51%), Gaps = 8/259 (3%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQNFL D  ++  I  +     G  ++EIG G   LT+ +      ++ VIE D+   
Sbjct: 1   RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142
             L+        +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S   
Sbjct: 60  ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PKV 
Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175

Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   G++  +R
Sbjct: 176 SAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGLDPAMR 235

Query: 261 AENLSIEDFCRITNILTDN 279
           AEN+S+  +C++ N L +N
Sbjct: 236 AENISVAQYCQMANYLAEN 254


>gi|50913600|ref|YP_059572.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10394]
 gi|50902674|gb|AAT86389.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10394]
          Length = 298

 Score =  278 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 9   MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 67

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     ++F N  
Sbjct: 68  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 125

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 126 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 182

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 183 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRDQPLIEIKDEDFFFRVSRLSFVHRR 242

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 243 KTLWNNLTSHFGKSEDIKTKLEKGLALADIKPSIRGEALSIQDFGKLADALKE 295


>gi|229551483|ref|ZP_04440208.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1]
 gi|258540770|ref|YP_003175269.1| dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705]
 gi|229315166|gb|EEN81139.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1]
 gi|257152446|emb|CAR91418.1| Dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705]
          Length = 294

 Score =  278 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 91/279 (32%), Positives = 138/279 (49%), Gaps = 18/279 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  +    +K +GQNFL D  IL+KI  ++   +   VIEIG G G LTQ L    A 
Sbjct: 13  AILKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLADQ-AH 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANLPY 127
           +V+ +E D +  PIL +  + +PN   ++ +D LK +  +     F+ +  ++++ANLPY
Sbjct: 72  QVVALEIDDRLLPILAETLADYPNT-TVVNEDVLKTNLTELVATHFDGNHTLKVVANLPY 130

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T +L + + A        S+T++ QKEV  R++A   S  YG LS+           
Sbjct: 131 YITTPILLHLLRAHLP---LHSMTVMMQKEVAARLSATPGSKDYGSLSIAVQLVADVATA 187

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +S H F P+P V S ++       P+      +S  ++ + AF  RRKTL  +L  L 
Sbjct: 188 FTVSRHAFVPAPNVDSAIVTLTQRPEPLAAVKNPDSFDRLVRGAFASRRKTLWNNLVALF 247

Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           G+         L  A I    RAE L+I DF R+   L 
Sbjct: 248 GKPNKAAIRTALSVAEIAPETRAEQLAITDFARLDEALR 286


>gi|229816980|ref|ZP_04447262.1| hypothetical protein BIFANG_02235 [Bifidobacterium angulatum DSM
           20098]
 gi|229785725|gb|EEP21839.1| hypothetical protein BIFANG_02235 [Bifidobacterium angulatum DSM
           20098]
          Length = 296

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 132/281 (46%), Gaps = 11/281 (3%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I     + P K  GQNF++D   +++I   +       V+E+G G G+LT  +L
Sbjct: 16  AADIRRIADEAGVSPTKKFGQNFVIDPGTVRRIVREAHVEADTHVLEVGPGLGSLTLAIL 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D      L +  ++       RL I+  DAL VD      F    P  
Sbjct: 76  ETGA-TMTAVEIDPPLAERLPNTVAEFMPDASKRLSIVNRDALTVDPATLPEFADGKPFT 134

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A   +  YG  SV   W
Sbjct: 135 LVANLPYNVATPILLTLLERFDNLDSFLVMV---QKEVADRLAATPGNKIYGTPSVKLAW 191

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQ 239
             +A  +  I  +VF+P+P V S ++HF     P P  L      +   AFG+RRKTL  
Sbjct: 192 YGEAKRVGTIGRNVFWPAPNVDSALVHFQRFGTPRPQELRERTFSLIDAAFGQRRKTLHA 251

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +LK++        AGI+   R E L+I++F  +   +  N+
Sbjct: 252 ALKKIVPAEAFEAAGIDPTRRGETLTIDEFVALATAMEGNE 292


>gi|320120297|gb|EFE28598.2| dimethyladenosine transferase [Filifactor alocis ATCC 35896]
          Length = 286

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 85/279 (30%), Positives = 144/279 (51%), Gaps = 14/279 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +LK I   Y     K +GQNFL+D NIL+KI +S+   +   VIE+G G G LT+ L   
Sbjct: 10  TLKEITKKYGFQFTKSLGQNFLVDTNILQKIVDSADIQEEDIVIEVGTGIGTLTRELAKR 69

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPY 127
            A+KV  IE D++  PI+K+ +S + N ++ +  D L+V  E         I++IAN+PY
Sbjct: 70  -AKKVYAIEIDKKLIPIVKETTSNY-NNIDFVNMDFLEVVLEDLIQEKDRKIKVIANIPY 127

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++   + +        ++ L+ QKEV +R++A+ ++  YG LSV   + +    +
Sbjct: 128 YITTPIIMKCLESSL---DISTILLMIQKEVADRLSAEPSTKAYGSLSVAVQYYSDVEFV 184

Query: 188 FDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQS------ 240
             +S   F+P PKV S ++     H        +   ++ + AF KRRKT+  S      
Sbjct: 185 GKVSKSCFYPQPKVDSGIVKLSKKHEYIFVRDRKLFSQVVKSAFAKRRKTISNSMIGFCE 244

Query: 241 -LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              +      L ++G +   R E L++E+F  ++N + +
Sbjct: 245 QFTKDNVMKALEKSGTDAKRRGETLTVEEFAHLSNCMFE 283


>gi|21909726|ref|NP_663994.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS315]
 gi|28895107|ref|NP_801457.1| dimethyladenosine transferase [Streptococcus pyogenes SSI-1]
 gi|27151566|sp|Q8K8N6|RSMA_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21903910|gb|AAM78797.1| putative dimethyladenosine transferase [Streptococcus pyogenes
           MGAS315]
 gi|28810352|dbj|BAC63290.1| putative dimethyladenosine transferase [Streptococcus pyogenes
           SSI-1]
          Length = 290

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 153/293 (52%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIKQFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            PI+++ANLPY I T +L + I +      ++   ++ Q+EV +RI+A+ N+  YG LS+
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FQEFVVMMQREVADRISAEPNTKAYGSLSI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +   A + F +   VF P+P V S ++  +    P+      +   ++++ +F  RR
Sbjct: 175 AVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMMRRDQPLIEVKDEDFFFRVSRLSFVHRR 234

Query: 235 KTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L    G         E  L  A I++++R E LSI+DF ++ + L +
Sbjct: 235 KTLWNNLTSHFGKSEDIKAKLEKGLALADIKSSIRGEALSIQDFGKLADALKE 287


>gi|227824447|ref|ZP_03989279.1| dimethyladenosine transferase [Acidaminococcus sp. D21]
 gi|226904946|gb|EEH90864.1| dimethyladenosine transferase [Acidaminococcus sp. D21]
          Length = 287

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 93/276 (33%), Positives = 145/276 (52%), Gaps = 12/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL  + +  KK  GQNFL++ ++++ IAE +    G  V+E+G G G LTQ L   G
Sbjct: 18  TRYILDTFGLHTKKRFGQNFLINESVVRGIAEKAKIGPGDLVLEVGPGIGTLTQALAETG 77

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  +E D+   PIL+     + N +EII  D LKVD +       P  + ANLPY I
Sbjct: 78  AN-VKSVEIDESLLPILRKTLEGYDN-VEIIHGDILKVDLKDITG-GKPFTVAANLPYYI 134

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++F+ + A+      + + ++ QKEV ER+ A+  +  YG LS+   + ++  +   
Sbjct: 135 TTPIIFSLLEANLP---LKRIVVMVQKEVAERMAARPGTKAYGPLSLALQYYSEPQLAIP 191

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLG--- 245
           +  H F P+PKV S V+      +PI     SL  K+ + AF +RRK LR  LK +    
Sbjct: 192 VPAHDFMPAPKVDSMVVVCEKRESPIVNVDASLYVKVVRAAFSQRRKMLRTCLKSMVRPG 251

Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              E  + +AGIE   R E+L+IE+F ++     + 
Sbjct: 252 DTAEAWMARAGIEPTRRGESLTIEEFGKLAESWEEK 287


>gi|254522856|ref|ZP_05134911.1| dimethyladenosine transferase [Stenotrophomonas sp. SKA14]
 gi|219720447|gb|EED38972.1| dimethyladenosine transferase [Stenotrophomonas sp. SKA14]
          Length = 267

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 132/258 (51%), Gaps = 10/258 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D + + KI  +    DG  ++EIG G G +T  LL +   K+ VIE D+
Sbjct: 16  AKKQLGQHFLADRHYIDKIVMAVNPKDGDRLVEIGPGQGAITLPLLRVHP-KLTVIEFDR 74

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L   +++    L I+  D L+VDF +      PIR++ NLPYNI + +LF+ +  
Sbjct: 75  DLIAPL-TAAAEPLGELTIVHRDVLRVDFTELA-AGQPIRLVGNLPYNISSPILFHALEH 132

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PK
Sbjct: 133 AA---VVRDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCQVTSLFVVPPGAFRPPPK 189

Query: 201 VTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           V S V+  +P  +P        +   ++ + AFG+RRKTLR +L  +        AG+  
Sbjct: 190 VDSAVVRLVPR-DPASIGINDHKRFAEVVKAAFGQRRKTLRNALNNVVSAEQFIAAGVRP 248

Query: 258 NLRAENLSIEDFCRITNI 275
           + RAE L + +F  + N 
Sbjct: 249 DARAEQLDVAEFVALANA 266


>gi|284048769|ref|YP_003399108.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM
           20731]
 gi|283952990|gb|ADB47793.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM
           20731]
          Length = 284

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 137/278 (49%), Gaps = 12/278 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL  + +  KK  GQNFL++  +++ IA  +    G  V+EIG G G LTQ L   G
Sbjct: 12  TRYILDTFGLRAKKKFGQNFLINEQVVRGIAREAQVGPGDLVLEIGPGIGTLTQALAETG 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +V  +E D+   P+L      + N +EI+  D LKVD         P  + ANLPY I
Sbjct: 72  A-QVKSVEIDRTLLPVLAKTLEGYDN-VEIVPGDVLKVDLGAVTK-HRPFTVAANLPYYI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++F  +  D      + L ++ QKEV ER+ A      YG LS+   + ++  +   
Sbjct: 129 TTPIIFALLEEDLP---LQRLVVMVQKEVAERMIASPGGKDYGPLSLALQYYSRPRLAIP 185

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245
           +    F P+P+V S V+      +P +    +   ++ + AF +RRK L   LK LG   
Sbjct: 186 VPARDFMPAPRVDSMVVVCEKREHPAVDVPAKVFFRVVKAAFSQRRKMLSNCLKNLGLSG 245

Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
              + LL +AGI+   R E+L++E+F  +     +  +
Sbjct: 246 DQVQQLLAEAGIDGKRRGESLTMEEFGNLARAYRNQAE 283


>gi|169830264|ref|YP_001716246.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637108|gb|ACA58614.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 299

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 147/278 (52%), Gaps = 15/278 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +L+ Y + P+K +GQNFL+   +L KI E++       VIEIG G G LT+ L   
Sbjct: 14  EVRRLLAEYGLKPRKSLGQNFLVAAGVLDKILEAAEVEKDEVVIEIGPGVGALTRRLAEK 73

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLP 126
           GAR V  +E D +  P+LK++     +R+ +I  DALKVD+        +   +++ANLP
Sbjct: 74  GAR-VAAVEIDGRLIPLLKEVLGDLGDRVRLINADALKVDYGALLAEMGAGSFKVVANLP 132

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I +  +  ++ A      +E + L+ QKEV +R+TA   +  YG LSVL  + T+A +
Sbjct: 133 YYITSPFVAGFLEA---GYRFERMVLMVQKEVADRMTAANGTESYGALSVLVAYHTEADV 189

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRL 244
           ++ +S H F+P P V S V+  +    P    L  E   +I + +FG+RRK L  +L   
Sbjct: 190 VWRVSRHCFYPPPAVDSAVVRLMRRPAPAVTVLQPELFFRIVRASFGRRRKMLPNALAGA 249

Query: 245 GG-------ENLLHQAGIETNLRAENLSIEDFCRITNI 275
                      ++  AGI+  +R E L+ + F  I + 
Sbjct: 250 VPGLDRETWVQIIESAGIDPRVRGETLTPDQFGLIADA 287


>gi|296131650|ref|YP_003638897.1| dimethyladenosine transferase [Thermincola sp. JR]
 gi|296030228|gb|ADG80996.1| dimethyladenosine transferase [Thermincola potens JR]
          Length = 292

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/294 (32%), Positives = 145/294 (49%), Gaps = 21/294 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        +K I+  Y    KK +GQNFL+D N++  I +++       V+EIG G G 
Sbjct: 1   MGSLASPVVVKNIIEKYGFRFKKALGQNFLIDRNVVTNICKTADLKKSDLVVEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115
           LT+ L    A  VI +E D+    IL++    + N + IIQ+D LKV+ +K         
Sbjct: 61  LTEQLAHY-AGHVIAVELDKDLIGILEENLRAYGN-VTIIQNDILKVNLDKVVGDFRKEH 118

Query: 116 ---SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
                P +++ANLPY I T +L   +  +        + ++ QKEV ERI AQ  S  YG
Sbjct: 119 DLAEGPYKVVANLPYYITTPVLMYLMENNFN---ISEIVVMIQKEVAERIAAQPGSKDYG 175

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAF 230
            LS+   + T+  ++  +   VF P P+V S VI       P       E L +I + AF
Sbjct: 176 ALSLAVRYYTEPALVMRVPRTVFIPKPEVDSAVIKLKRLSRPPVEVKDEELLFRIIRAAF 235

Query: 231 GKRRKTLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           G+RRKTL  SL+      +   +  L Q GI    R E L++++F  ++NI ++
Sbjct: 236 GQRRKTLLNSLRGGLGCDKEVIKKALTQVGINPERRGETLTLQEFAALSNIFSN 289


>gi|254283714|ref|ZP_04958682.1| dimethyladenosine transferase [gamma proteobacterium NOR51-B]
 gi|219679917|gb|EED36266.1| dimethyladenosine transferase [gamma proteobacterium NOR51-B]
          Length = 265

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 7/264 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
                 P+K  GQNFL D +++  IA++     G  ++EIG G G LTQ L++       
Sbjct: 7   GRLGHKPRKRFGQNFLRDQSVIDAIAQAINPQPGDHLVEIGPGEGALTQALISTECAYD- 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            IE D+    +L    S + N   +   DAL  DF +       +R++ NLPYNI T L+
Sbjct: 66  AIELDRDLTAVLLASFSIYSN-FALHSADALNFDFSQLRVSEEKLRVVGNLPYNISTPLI 124

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +           +  + Q EV +R++A   S H+GR+ V+  +  + T + D+ P  
Sbjct: 125 FKLLEN---IDIIRDMHFMLQLEVVQRLSAAPGSKHWGRVGVMAQYLCQVTHLIDVPPES 181

Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F+P+PKV S V+   PH +     C   +L+ +T+ AF +RRKTLR + K +  ++ L  
Sbjct: 182 FYPAPKVQSAVVSLRPHHSSPYKACDPVALRTVTRHAFAQRRKTLRNNFKGIIDDSALEA 241

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
            GI+ N RAE+L++ DF  + +++
Sbjct: 242 LGIDPNARAESLALADFVSLASLM 265


>gi|304438967|ref|ZP_07398890.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372633|gb|EFM26216.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 284

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 150/282 (53%), Gaps = 15/282 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M    K   L  IL  +     K +GQNFL+D NI+++IA+ +G  +G  V+EIG G G 
Sbjct: 1   MDRLFKPSVLVQILEEFGFRFTKSLGQNFLIDGNIVRRIADGAGVEEGSNVLEIGPGVGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPI 119
           LT+ LL  GA  V+ +E D+    I K     + +R++II DD L++D E+  + +  PI
Sbjct: 61  LTEELLLRGAN-VLAVEIDKNLVDIHKKTL--NYDRVKIIYDDFLRLDTEEIKSYLKGPI 117

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY + T ++   + +D      ES+T++ QKEV  R  A+  +  YG LSV   
Sbjct: 118 KVVANLPYYVTTPIITKILESDL---EVESITVMVQKEVANRFAAEAGTKDYGSLSVFIN 174

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           +  +   +F +   VF P P V S V+      +      + L ++ + AF KRRKT+  
Sbjct: 175 YYAEPKYLFSVPKSVFMPKPNVDSAVVKLEIKKHREDIDKDKLFRVVRGAFSKRRKTILN 234

Query: 240 SLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRIT 273
           +L   G +N+        L  +GI+ N R E LS E+F  ++
Sbjct: 235 ALSTYGFKNITKTEIAEALKISGIDANRRGETLSPEEFMVLS 276


>gi|71909268|ref|YP_286855.1| dimethyladenosine transferase [Dechloromonas aromatica RCB]
 gi|119365019|sp|Q479U6|RSMA_DECAR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71848889|gb|AAZ48385.1| dimethyladenosine transferase [Dechloromonas aromatica RCB]
          Length = 255

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/262 (33%), Positives = 133/262 (50%), Gaps = 11/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
             + +K  GQNFL+D  I+  I  +       TV+EIG G G +T+ L+      + VIE
Sbjct: 3   GHVARKRFGQNFLVDQGIIAAIISAVDPKRDETVVEIGPGLGAITEPLMAR-VDHLHVIE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     LK      P R+ + + DAL  D   F +I   +R++ NLPYNI T LLF+ 
Sbjct: 62  IDRDLIARLKK--QHTPERMTVHEGDALAFD---FASIGKNLRLVGNLPYNISTPLLFHL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                +      +  + QKEV ER+ A+  +  +GR+SV+  +R     + D+ P  F P
Sbjct: 117 ---AEYVDVVHDMHFMLQKEVVERMVAEPGNADFGRMSVMLQYRFYLEWLIDVPPESFDP 173

Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S V+  IP           E L ++   AF +RRK LR ++K L  +    + GI
Sbjct: 174 PPKVQSAVVRLIPKPVSELNAKSQEKLSQVALTAFSQRRKMLRNTMKTLLSDAAFTELGI 233

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +   R E++S+ED+ RI N L+
Sbjct: 234 DPTCRPEDVSVEDYVRIANYLS 255


>gi|23097505|ref|NP_690971.1| dimethyladenosine transferase [Oceanobacillus iheyensis HTE831]
 gi|27151561|sp|P59155|RSMA_OCEIH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|22775728|dbj|BAC12006.1| dimethyladenosine transferase (16S rRNA dimethylase)
           [Oceanobacillus iheyensis HTE831]
          Length = 294

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 22/298 (7%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT N         K IL  Y    KK +GQNFL+D+++L+ I   +G       IEIG G
Sbjct: 1   MTTNKYIATPSRTKDILGKYHFTFKKSLGQNFLVDVSVLQNIIRHAGITKDTAAIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFF 113
            G LT+ L  + A +V+  E DQ+  PIL+D   ++ N + +I  D LK D     ++ F
Sbjct: 61  IGALTEQLA-IHADQVVAFEIDQRLLPILQDTLGEYSN-VSVIHQDILKADVTKVIDEHF 118

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                + ++ANLPY I T +L   I          SLT++ QKEV +R++ + NS  YG 
Sbjct: 119 KEGQEVHVVANLPYYITTPILMKLIRDRLP---VTSLTVMIQKEVADRMSGEPNSKSYGS 175

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFG 231
           LS+   + ++A ++ ++   VF P P V S+++       P       +   +I Q +F 
Sbjct: 176 LSLAVQYYSEAKVVMNVPKQVFMPQPNVDSSILQLTMRKQPPVEVTDEDFFFEIIQASFA 235

Query: 232 KRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           +RRKTL+ +L R           +++L +AG+E   R E+L++E+F ++ N     Q 
Sbjct: 236 QRRKTLKNNLTRFFKGVHDKEKIDHILQEAGVEGIRRGESLTMEEFAQVANTFYQYQS 293


>gi|289551708|ref|YP_003472612.1| Dimethyladenosine transferase [Staphylococcus lugdunensis HKU09-01]
 gi|315660340|ref|ZP_07913193.1| dimethyladenosine transferase [Staphylococcus lugdunensis M23590]
 gi|289181239|gb|ADC88484.1| Dimethyladenosine transferase [Staphylococcus lugdunensis HKU09-01]
 gi|315494629|gb|EFU82971.1| dimethyladenosine transferase [Staphylococcus lugdunensis M23590]
          Length = 296

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 94/290 (32%), Positives = 148/290 (51%), Gaps = 24/290 (8%)

Query: 3   MNNK----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           M NK        K +L+ +    KK +GQNFL+D+NI+ KI ++S   +   VIEIG G 
Sbjct: 1   MENKDIATPSRTKELLTRFGFNFKKSLGQNFLVDVNIIHKIIDASDIDERTGVIEIGPGM 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFN 114
           G+LT+ L    A++VI  E DQ+  P+L    + + N + +I +D LK D       + N
Sbjct: 61  GSLTEQLAK-KAKQVIAFEIDQRLIPVLDYTLAPYEN-VTVINEDILKADIAAAVHTYLN 118

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
               I ++ANLPY I T +L N +  D      +   ++ QKEVGER+ A   +  YG L
Sbjct: 119 DCEKIMVVANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNATVGTKAYGSL 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232
           S++T + T+ + +  +   VF P P V S V+  +    P+    +     K+ + AF +
Sbjct: 176 SIVTQYYTETSKVVTVPKSVFMPPPNVDSIVVKLMQRSQPLVDIDDETAFFKLAKAAFAQ 235

Query: 233 RRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRIT 273
           RRKT+  + +    +         + L+ A I+   R E LSI+DF R+ 
Sbjct: 236 RRKTINNNYQNHFKDGKKHKEAILSWLNAAEIDPKRRGETLSIQDFARLY 285


>gi|289423351|ref|ZP_06425159.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L]
 gi|289156282|gb|EFD04939.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L]
          Length = 293

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 147/291 (50%), Gaps = 17/291 (5%)

Query: 1   MTMNNKSH-SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M     SH +   I+  +     K +GQNFL+D NI+ KI + S +  G  VIE+G G G
Sbjct: 1   MDKRLSSHKATMEIVKKHDFKFTKSLGQNFLIDDNIIDKIVDGSLAGQGDKVIEVGPGIG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---IS 116
            LT+ L +  + KV+V+E D++  PIL D  S   N + I+ +D +K D +   +     
Sbjct: 61  TLTRELASR-SEKVMVVEIDKKLIPILGDTLSDFDN-VTIVNEDIMKADIKDLIDKNLDG 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P++++ANLPY I T ++  ++  D        + ++ QKEV ER+ A      +G LSV
Sbjct: 119 GPVKLVANLPYYITTPIIMRFLEEDIN---VTDIVVMVQKEVAERMNANPGKKDFGALSV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRR 234
              +     ++  +  H+F P P V S VI     P         +   KI + +FG+RR
Sbjct: 176 AVQFYCDTEIVAKVPRHLFVPQPNVDSIVIALRVRPERKYKVEDEDLFFKIVKASFGQRR 235

Query: 235 KTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           KTL  SL  +G  +      +L  AGI+   R E LS+E+F R+++ +   
Sbjct: 236 KTLLNSLTSMGILDKTDISAVLSVAGIDEKRRGETLSLEEFARLSDCMHSR 286


>gi|52843122|ref|YP_096921.1| dimethyladenosine transferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|62900493|sp|Q5ZRF4|RSMA_LEGPH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|52630233|gb|AAU28974.1| dimethyladenosine transferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 256

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 133/263 (50%), Gaps = 10/263 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  P+K  GQNFL D  I+ +I  +   L    ++EIG G G LTQ LL     ++  IE
Sbjct: 2   RHSPRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLL-QKLNQLTAIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L         +L +I  DAL VDF +F      +R++ NLPYNI T LL   
Sbjct: 61  IDTDLQSYL-TCLPASQGKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV ERI A   +  YGRLSV+  +  +   +FD+ P  F P
Sbjct: 117 LK---FITCIDDMHFMLQKEVVERIAAAHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEP 173

Query: 198 SPKVTSTVIHFIPHL-NPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++   P+  +P      E L+ I  +AF  RRKTL  +LK +   + L+  GI
Sbjct: 174 RPKVDSAIVRLTPYRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGI 233

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           +   R E +S+ ++ ++   +++
Sbjct: 234 DGGKRPEQISVAEYVQLAKFISN 256


>gi|191639502|ref|YP_001988668.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Lactobacillus
           casei BL23]
 gi|190713804|emb|CAQ67810.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Lactobacillus
           casei BL23]
          Length = 302

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/279 (33%), Positives = 138/279 (49%), Gaps = 18/279 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  +    +K +GQNFL D  IL+KI  ++       VIEIG G G LTQ L    A 
Sbjct: 19  AILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADS-AH 77

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127
           +V+ +E D +  PIL +  + +PN   ++ +D LK D      + F+    ++++ANLPY
Sbjct: 78  QVVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPY 136

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T +L + + A        S+T++ QKEV ER++A   S  YG LS+           
Sbjct: 137 YITTPILLHLLRAQLP---LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATA 193

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +S H F P+P V S ++       P+       S  ++ + AF  RRKTL  +L  L 
Sbjct: 194 FTVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLF 253

Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           G+       + L  A I+   RAE LSI DF R+   L 
Sbjct: 254 GKTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRALR 292


>gi|116492073|ref|YP_803808.1| dimethyladenosine transferase [Pediococcus pentosaceus ATCC 25745]
 gi|122266463|sp|Q03HF6|RSMA_PEDPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116102223|gb|ABJ67366.1| dimethyladenosine transferase [Pediococcus pentosaceus ATCC 25745]
          Length = 297

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 146/292 (50%), Gaps = 21/292 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N + + + IL  Y +  KK +GQNFL D N+L  I +++       VIE+G G G+
Sbjct: 5   MDIGNPTRT-RAILEKYGLSAKKSLGQNFLTDPNVLLNIVDAAEVSPEDDVIEVGPGIGS 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ +    A  V+  E D+    +L +  S + N + ++  D LK +     E   +  
Sbjct: 64  LTEQIAKR-AHHVLAFEIDRNLMNVLDETLSPYDN-ITVVNQDVLKANVNEEVENHLDGK 121

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             ++++ANLPY I T +L  ++++       + + ++ QKEV ER+TAQ     YG LSV
Sbjct: 122 RRLKLVANLPYYITTPILKTFMASTLP---IDKMVVMMQKEVAERLTAQPGDKEYGSLSV 178

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRR 234
           +  +R    + FD+S  VF P PKV S ++   P      +P   +   K     F  RR
Sbjct: 179 VVQYRMNTQIEFDVSSKVFVPRPKVDSAIVSLTPRAGWEVMPEDDKDFFKTVHGCFMHRR 238

Query: 235 KTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           K +  +++ L G+         N+L   GI+  +R E L++ DF ++ N + 
Sbjct: 239 KNIWNNMQGLYGKEPEIKAKIQNVLDDLGIDPQVRPERLTVLDFIKLHNRIQ 290


>gi|77165198|ref|YP_343723.1| 16S rRNA dimethylase [Nitrosococcus oceani ATCC 19707]
 gi|254434334|ref|ZP_05047842.1| dimethyladenosine transferase [Nitrosococcus oceani AFC27]
 gi|119365041|sp|Q3JAF3|RSMA_NITOC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|76883512|gb|ABA58193.1| dimethyladenosine transferase [Nitrosococcus oceani ATCC 19707]
 gi|207090667|gb|EDZ67938.1| dimethyladenosine transferase [Nitrosococcus oceani AFC27]
          Length = 264

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 127/264 (48%), Gaps = 7/264 (2%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++      +K  GQ+FL D  +++++  +        ++EIG G G LT  LL      +
Sbjct: 1   MNTLGHRARKRFGQHFLHDKGVIERLLRAINPQLNDLMVEIGPGQGALTLPLLH-CLGHL 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             IE D+     L +  +     L +   D+L  DF    + +  +R++ NLPYNI T L
Sbjct: 60  EAIELDRDLAAYLVERCAS-EGNLRLHNVDSLTFDFRTLAHENRRLRVVGNLPYNISTPL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +         E +  + Q+EV  R+ A+     YGRLSV+  +  +   +F +   
Sbjct: 119 LFHLLGQ---IGILEDMHFMLQREVVTRLAAKPGGKDYGRLSVMVQFYCEVEPLFTVKSG 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P PKV S V+  IPH   +   +   +L ++  +AF +RRKTL  +LK L     L 
Sbjct: 176 AFVPPPKVDSMVVRLIPHRPSLAPNISHGALNRVVSQAFSQRRKTLANALKGLLSSAELI 235

Query: 252 QAGIETNLRAENLSIEDFCRITNI 275
             GI+   R E +S+ED+  +T  
Sbjct: 236 ALGIDPRQRPETISLEDYLALTRY 259


>gi|326405097|ref|YP_004285179.1| ribosomal RNA small subunit methyltransferase A [Acidiphilium
           multivorum AIU301]
 gi|325051959|dbj|BAJ82297.1| ribosomal RNA small subunit methyltransferase A [Acidiphilium
           multivorum AIU301]
          Length = 272

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/277 (37%), Positives = 160/277 (57%), Gaps = 6/277 (2%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M   +  L+ +++ + +  K+ +GQ+FLLD ++L +IA  +G L G+ VIE+G GPG LT
Sbjct: 1   MTQGAPPLREVIARHGLSAKRALGQHFLLDPDLLARIARLAGPLAGVNVIEVGPGPGGLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A  V  IE D +    + ++++  P RL +++     +D +    + +P  I+
Sbjct: 61  RALLASDAAGVTAIELDPRAVGAVAELAAADPGRLRVVEG--DALDLDLAALVPAPRAIV 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN GT +L  W+        + S+TL+FQ+EV ERI A   SP YGRL+VL     
Sbjct: 119 ANLPYNAGTAMLLRWLHQAAC---FRSMTLMFQREVAERIVAAPGSPAYGRLAVLAALTV 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
           +  ++  + P  F P PKV S V+  +PH + + P  L  + ++T  AFG+RRK LR SL
Sbjct: 176 RGAIVLTLPPGAFSPPPKVDSAVVRLVPHEDQLQPALLAKVGRVTAAAFGQRRKMLRGSL 235

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           K LGG  L   AGI+ + RAE L+  +F  +  +L D
Sbjct: 236 KALGGATLAEAAGIDPSRRAETLTPAEFLSLARLLPD 272


>gi|227532998|ref|ZP_03963047.1| dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227189399|gb|EEI69466.1| dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 302

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 94/279 (33%), Positives = 139/279 (49%), Gaps = 18/279 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  +    +K +GQNFL D  IL+KI  ++       VIEIG G G LTQ L    A 
Sbjct: 19  AILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADS-AH 77

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127
           +V+ +E D +  PIL +  + +PN + ++ +D LK D      + F+    ++++ANLPY
Sbjct: 78  QVVALEIDDRLLPILDETLADYPNAM-VVNEDVLKTDLGALVAEHFDGKHTLKVVANLPY 136

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T +L + + A        S+T++ QKEV ER++A   S  YG LS+           
Sbjct: 137 YITTPILLHLLRAQLP---LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATA 193

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +S H F P+P V S ++       P+       S  ++ + AF  RRKTL  +L  L 
Sbjct: 194 FTVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLF 253

Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           G+       + L  A I+   RAE LSI DF R+   L 
Sbjct: 254 GKTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRALR 292


>gi|239630423|ref|ZP_04673454.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301067575|ref|YP_003789598.1| dimethyladenosine transferase (rRNA methylation) [Lactobacillus
           casei str. Zhang]
 gi|239526706|gb|EEQ65707.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300439982|gb|ADK19748.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
           casei str. Zhang]
 gi|327383599|gb|AEA55075.1| Dimethyladenosine transferase [Lactobacillus casei LC2W]
 gi|327386791|gb|AEA58265.1| Dimethyladenosine transferase [Lactobacillus casei BD-II]
          Length = 298

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 94/279 (33%), Positives = 138/279 (49%), Gaps = 18/279 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  +    +K +GQNFL D  IL+KI  ++       VIEIG G G LTQ L    A 
Sbjct: 15  AILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADS-AH 73

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127
           +V+ +E D +  PIL +  + +PN   ++ +D LK D      + F+    ++++ANLPY
Sbjct: 74  QVVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPY 132

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T +L + + A        S+T++ QKEV ER++A   S  YG LS+           
Sbjct: 133 YITTPILLHLLRAQLP---LHSMTVMMQKEVAERLSATPGSKEYGSLSIAVQLVASVATA 189

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +S H F P+P V S ++       P+       S  ++ + AF  RRKTL  +L  L 
Sbjct: 190 FTVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLF 249

Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           G+       + L  A I+   RAE LSI DF R+   L 
Sbjct: 250 GKTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRALR 288


>gi|313639861|gb|EFS04574.1| dimethyladenosine transferase [Listeria seeligeri FSL S4-171]
          Length = 284

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 141/277 (50%), Gaps = 21/277 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNVKVVHGDVLKADVEEVIASQFTKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + T ++   +  +      +S+T + QKEV +RI+A  ++  YG L++   +  +A +
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            F +   VF P P V S VIH      P+          ++T+ +F +RRKTL  +L   
Sbjct: 188 AFIVPKTVFMPQPNVDSAVIHLKRRKEPLAQVNDEAFFFEVTRASFAQRRKTLWNNLASK 247

Query: 245 GGE---------NLLHQAGIETNLRAENLSIEDFCRI 272
             E           L+  GI+   R E L I +F ++
Sbjct: 248 FPELKARKDELVEGLNGIGIDLIRRGETLDIPEFAKL 284


>gi|125624667|ref|YP_001033150.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493475|emb|CAL98452.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071459|gb|ADJ60859.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 294

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 101/294 (34%), Positives = 153/294 (52%), Gaps = 23/294 (7%)

Query: 1   MTMNNK---SHSLK--TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55
           MT NN    S+ ++   IL  +    KK  GQNFL D NIL KI E++     + VIEIG
Sbjct: 1   MTENNIDRISNIIRTQDILRRHDFNFKKKFGQNFLTDHNILTKITETADLSKEVNVIEIG 60

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEK 111
            G G+L+Q LL   A +V+  E D+   PIL++  + + N   ++  D LKVD     +K
Sbjct: 61  PGIGSLSQYLLEEAA-EVMAFEIDKSLIPILEETMAPYDN-FTLVSADILKVDLLSEIQK 118

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           F N + PI+++ANLPY I T +L + I +      +    ++ QKEV +RI A   +  Y
Sbjct: 119 FKNPNLPIKVVANLPYYITTPILMHLIESKIP---FSEFVVMMQKEVADRIAASPKTKAY 175

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEA 229
           G LS+   +  +A++ F +   VF P+P V S ++  +    P+      E   K    +
Sbjct: 176 GSLSIAVQYYMEASVAFIVPRTVFIPAPNVDSAILKMVRREEPLVEVEDEEWFFKTMHSS 235

Query: 230 FGKRRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           F  RRKTL  +++   G+        LL QA I   +R E LSIE+F ++ + L
Sbjct: 236 FVHRRKTLMNNMQAAFGKESKPEIEKLLAQAEISPTIRGEALSIEEFAKLADAL 289


>gi|303229693|ref|ZP_07316481.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515818|gb|EFL57772.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a]
          Length = 284

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 141/283 (49%), Gaps = 13/283 (4%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           ++      +  I   + I   K +GQNFL+   I+ +I +++   +G  V+EIG G G L
Sbjct: 4   SIIASPEVVHYICKRFDIKMSKKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTL 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           TQ L   GA  V  IE D +   +L    +Q+ N + I+  D LK+D     N + P ++
Sbjct: 64  TQGLAQSGAN-VTAIELDTRLLEVLDTTLAQYSN-VTIVHGDVLKLDVPSIMN-NEPFKV 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++ + + +       E L ++ QKEV  R+ A+  +  YG LSV   + 
Sbjct: 121 VANLPYYITTPIIMSLLESRLP---IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYY 177

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ 239
           TK  ++ D+ P  F P+P VTS+VI  +    P       +   ++ +  F +RRKT   
Sbjct: 178 TKPDIVLDVPPKSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFAN 237

Query: 240 SLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           ++K  G      E LL +A I+   R E  ++++F  + N   
Sbjct: 238 TMKTTGLSKDRIEELLAKANIDGQRRGETFTLQEFADVANAWA 280


>gi|282883264|ref|ZP_06291862.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B]
 gi|281296894|gb|EFA89392.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B]
          Length = 288

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 144/288 (50%), Gaps = 17/288 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M    K   +  IL  Y     K +GQNFL+D NI++KI +S+   +   V+EIG G G 
Sbjct: 1   MERLFKPKRVSEILKKYNFRFSKTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           LT+ L  L A+KV+ IE D++   +L++      + ++II  D LK+D +   +      
Sbjct: 61  LTEELA-LRAKKVVSIEIDKRLEDLLEETLP--YDNVKIIYKDFLKLDLKTLIDEEFKGQ 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             +++ANLPY I T ++   +         E + ++ QKEV +R TAQ  +  YG LSV 
Sbjct: 118 NFKVVANLPYYITTPIIEKLLLNSEN---IEIINVMIQKEVAKRFTAQPQTKDYGSLSVF 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             +  +A   F +   VF P P V S V       +      E   KI + AF KRRKTL
Sbjct: 175 IQFFCRAFYEFTVPRTVFMPKPNVDSGVCKLEVKRDLPNIDREEFFKIVRAAFSKRRKTL 234

Query: 238 RQSLK-------RLGGENLLHQAGIETNLRAENLSIEDFCRIT-NILT 277
             SL        +     +L  +GI+T  RAE+L++EDF  +  N+L 
Sbjct: 235 VNSLSQSQLNLDKNKVTEILELSGIDTKRRAESLTLEDFLVLYVNVLK 282


>gi|332638745|ref|ZP_08417608.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Weissella cibaria KACC 11862]
          Length = 298

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 148/285 (51%), Gaps = 21/285 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + I++ + I  KK +GQNFL D+NILK I  +        V+EIG G G LT+ L    
Sbjct: 13  TQAIMNQFGINTKKSLGQNFLTDINILKNIVAAGDVQKTDNVVEIGPGIGALTEQLA-RA 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIRIIAN 124
           A++V+  E D +  P+L    + + N + I+ +D LKVD EK F     ++++P++++AN
Sbjct: 72  AKQVVAFEIDDRLIPVLDHTMAPYDN-VTIVHNDILKVDLEKEFAKQFEDVTAPLKLVAN 130

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T +L   + +      ++++ ++ QKEV +R++A+  +  YG L++   +R  A
Sbjct: 131 LPYYITTPILMQVLQSGIH---FDNIVVMMQKEVADRLSAEPGTKDYGSLTLAVQYRMNA 187

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLK 242
            + F +S   F P+P V S +I   P       P   + L ++ +  F  RRKTL  +L 
Sbjct: 188 KLAFTVSRTAFVPNPNVDSAIISLTPREPLAIQPRDEKRLFELFKIGFVMRRKTLWNNLT 247

Query: 243 RLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              G+           L    ++   RAE LS+E F  + N L D
Sbjct: 248 TAFGKGEAMQAKLTAALAAIDLDPRTRAEKLSLERFVELHNALFD 292


>gi|300814328|ref|ZP_07094600.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511595|gb|EFK38823.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 288

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 97/288 (33%), Positives = 144/288 (50%), Gaps = 17/288 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M    K   +  IL  Y     K +GQNFL+D NI++KI +S+   +   V+EIG G G 
Sbjct: 1   MERLFKPKRVSEILKKYNFRFSKTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           LT+ L  L A+KV+ IE D++   +L++      + ++II  D LK+D +   +      
Sbjct: 61  LTEELA-LRAKKVVSIEIDKRLKDLLEETLP--YDNVKIIYKDFLKLDLKTLIDEEFKGQ 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             +++ANLPY I T ++   +         E + ++ QKEV +R TAQ  +  YG LSV 
Sbjct: 118 NFKVVANLPYYITTPIIEKLLLNSEN---IEIINVMIQKEVAKRFTAQPQTKDYGSLSVF 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             +  KA   F +   VF P P V S V       +      E   KI + AF KRRKTL
Sbjct: 175 IQFFCKAFYEFTVPRTVFMPKPNVDSGVCKLEVKRDLPNIDREEFFKIVRAAFSKRRKTL 234

Query: 238 RQSLK-------RLGGENLLHQAGIETNLRAENLSIEDFCRIT-NILT 277
             SL        +     +L  +GI+T  RAE+L++EDF  +  N+L 
Sbjct: 235 VNSLSQSQLNLDKNKVTEILELSGIDTKRRAESLTLEDFLVLYVNVLK 282


>gi|320530094|ref|ZP_08031164.1| dimethyladenosine transferase [Selenomonas artemidis F0399]
 gi|320137527|gb|EFW29439.1| dimethyladenosine transferase [Selenomonas artemidis F0399]
          Length = 291

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 146/278 (52%), Gaps = 14/278 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL+ + +   K +GQNFL+D  +++ I E++      TV+EIG G G LTQ L   G
Sbjct: 14  TRHILNAFHLRASKRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPY 127
           AR V+ +E D++   +L +    + N + ++  D LK++  +          +++ANLPY
Sbjct: 74  AR-VVAVELDKKLPAVLAETLRGYDN-VTVVPGDILKINIPETLGLKEGQRFKVVANLPY 131

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++   +         E L  + QKEV  R+TAQ  S  YG LS+   + T   M+
Sbjct: 132 YITTPIIMTLLEQRLP---IERLVTMVQKEVAMRMTAQPGSKDYGALSLAVQYFTAPRMV 188

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P+P+VTS V+  I   +P   P   +   ++ + AFG+RRKTL  +L   G
Sbjct: 189 MDVPPRAFRPAPEVTSAVVACIVRESPSVAPRSEKLFFRLIRAAFGQRRKTLPNALVGAG 248

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 +  L  AGI  + R E LS+EDF RI++ + D
Sbjct: 249 LTKDAAQAALRAAGIAGSTRGEQLSLEDFARISDAVGD 286


>gi|331701953|ref|YP_004398912.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129296|gb|AEB73849.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
           buchneri NRRL B-30929]
          Length = 296

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 147/292 (50%), Gaps = 20/292 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
                + IL+ Y +  KK +GQNFL+DL +L  I  ++       VIEIG G G LT+ L
Sbjct: 9   SPTRTQAILNRYHLSAKKSLGQNFLVDLGVLDNIVAAAKITKADNVIEIGPGIGGLTEQL 68

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRI 121
               A KV+  E D    P+L +  + + N +EII  D LK +  K     F+   P+++
Sbjct: 69  AK-AANKVVAFEIDANLLPVLDETLAPYDN-IEIINQDILKANLPKIIDDVFDTEKPLKV 126

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++ + I+ +T    ++++ ++ QKEV ER+ A+ ++  YG LSV+    
Sbjct: 127 VANLPYYITTPIVMDLITGETQ---FDAIVVMMQKEVAERLNAEPSTKPYGSLSVIVQEL 183

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ 239
            +  + F +    F P PKV S ++   P +     P   ++     +  F  +RKTL  
Sbjct: 184 NQVEISFVVPKTAFIPQPKVDSAIVKLTPRVKRAVEPFDQKAFISFVRGCFMHQRKTLWN 243

Query: 240 SLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           +L+ + G         + +L    I+  +R ENL+++ F  + N     +++
Sbjct: 244 NLQGIFGKTPEVKGNIKEVLASVNIDAGVRPENLTVDQFVTLANAFHTLKNL 295


>gi|86516095|gb|ABC97698.1| KsgA [Shigella flexneri]
          Length = 256

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/259 (34%), Positives = 132/259 (50%), Gaps = 8/259 (3%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQNFL D  ++  I  +     G  ++EIG G   LT+ +      ++ VIE D+   
Sbjct: 1   RFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA 59

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADT 142
             L+        +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S   
Sbjct: 60  ARLQ-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS--- 115

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
           +      +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PKV 
Sbjct: 116 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 175

Query: 203 STVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+  +R
Sbjct: 176 SAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMR 235

Query: 261 AENLSIEDFCRITNILTDN 279
           AEN+S+   C++ N L +N
Sbjct: 236 AENISVAQDCQMANYLAEN 254


>gi|295694738|ref|YP_003587976.1| dimethyladenosine transferase [Bacillus tusciae DSM 2912]
 gi|295410340|gb|ADG04832.1| dimethyladenosine transferase [Bacillus tusciae DSM 2912]
          Length = 293

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/290 (30%), Positives = 143/290 (49%), Gaps = 17/290 (5%)

Query: 1   MTMNNKS-HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           MT +  S  S   +L  Y   PKK +GQ+FL+D  IL++I  ++       V+EIG G G
Sbjct: 1   MTDSRPSVPSAAELLRRYAFHPKKSLGQHFLVDDRILERIVAAADLSGREAVLEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---S 116
            LT  L    A +V+ +EKD+   P+L ++     N +++   D L+VD  +        
Sbjct: 61  ALTLRLA-QAAWRVLAVEKDRSLQPVLSEVLRDFGN-VQVCWGDVLEVDLPRMCEEAFGP 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +R++ANLPY + T ++   +      P  + + L+ Q+EV +R+TA+  +  YG L+V
Sbjct: 119 RTVRVVANLPYYVTTPVMMKLLEE---GPVMDRMVLMVQREVADRLTARPGTKTYGALTV 175

Query: 177 LTGWRTK-ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235
              W  +    +  +    F+P P+V S V+       P P     L ++ +  FG+RRK
Sbjct: 176 AVQWFAEKVESVARVPASCFWPRPEVDSVVVRLDLRPRPDPEVTRRLSRVVRAGFGQRRK 235

Query: 236 TLRQSLK-------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           TL  +L        R   E  L  A +  + RAE LS+E+F R+   L D
Sbjct: 236 TLLNALSHALAGRDRASIEQALRHARVAPDRRAETLSLEEFTRLAQALAD 285


>gi|54298928|ref|YP_125297.1| dimethyladenosine transferase [Legionella pneumophila str. Paris]
 gi|148361259|ref|YP_001252466.1| dimethyladenosine transferase [Legionella pneumophila str. Corby]
 gi|296108598|ref|YP_003620299.1| dimethyladenosine transferase [Legionella pneumophila 2300/99
           Alcoy]
 gi|62900488|sp|Q5X0V1|RSMA_LEGPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221673|sp|A5IIC0|RSMA_LEGPC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|53752713|emb|CAH14148.1| hypothetical protein lpp2995 [Legionella pneumophila str. Paris]
 gi|148283032|gb|ABQ57120.1| dimethyladenosine transferase [Legionella pneumophila str. Corby]
 gi|295650500|gb|ADG26347.1| dimethyladenosine transferase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 256

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 134/263 (50%), Gaps = 10/263 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  P+K  GQNFL D  I+ +I  +   L    ++EIG G G LTQ LL     ++  IE
Sbjct: 2   RHSPRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLL-QKLNRLTAIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L  +      +L +I  DAL VDF +F      +R++ NLPYNI T LL   
Sbjct: 61  IDTDLQNYLTRL-PVSQGKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV ERI A   +  YGRLSV+  +  +   +FD+ P  F P
Sbjct: 117 LK---FITCIDDMHFMLQKEVVERIAATHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEP 173

Query: 198 SPKVTSTVIHFIPHL-NPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++   P+  +P      E L+ I  +AF  RRKTL  +LK +   + L+  GI
Sbjct: 174 KPKVDSAIVRLTPYRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGI 233

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           +   R E +S+ ++ ++   +++
Sbjct: 234 DGGKRPEQISVAEYVQLAKFISN 256


>gi|303231892|ref|ZP_07318601.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513421|gb|EFL55454.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6]
          Length = 284

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 140/283 (49%), Gaps = 13/283 (4%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           ++      +  I   + I   K +GQNFL+   I+ +I +++   +G  V+EIG G G L
Sbjct: 4   SIIASPEVVHYICKRFDIKMSKKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTL 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           TQ L   GA  V  IE D +   +L    +Q+ N + I+  D LK+D     +   P ++
Sbjct: 64  TQGLAQSGAN-VTAIELDTRLLEVLDTTLAQYSN-VTIVHGDVLKLDVPSIMH-HEPFKV 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++ + + +       E L ++ QKEV  R+ A+  +  YG LSV   + 
Sbjct: 121 VANLPYYITTPIIMSLLESRLP---IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYY 177

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ 239
           TK  ++ D+ P  F P+P VTS+VI  +    P       +   ++ +  F +RRKT   
Sbjct: 178 TKPDIVLDVPPKSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFAN 237

Query: 240 SLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           ++K  G      E LL +A I+   R E  ++++F  + N   
Sbjct: 238 TMKTTGLSKDRIEELLAKANIDGQRRGETFTLQEFADVANAWA 280


>gi|54295765|ref|YP_128180.1| dimethyladenosine transferase [Legionella pneumophila str. Lens]
 gi|62900486|sp|Q5WSM3|RSMA_LEGPL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|53755597|emb|CAH17099.1| hypothetical protein lpl2855 [Legionella pneumophila str. Lens]
 gi|307611813|emb|CBX01526.1| hypothetical protein LPW_32131 [Legionella pneumophila 130b]
          Length = 256

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 133/263 (50%), Gaps = 10/263 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  P+K  GQNFL D  I+ +I  +   L    ++EIG G G LTQ LL     ++  IE
Sbjct: 2   RHSPRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGALTQPLL-QKLNRLTAIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L         +L +I  DAL VDF +F      +R++ NLPYNI T LL   
Sbjct: 61  IDTDLQSYL-TCLPVSQGKLNLIPADALTVDFCQF---GPHLRVVGNLPYNISTPLLIYL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +    + +  + QKEV ERI A   +  YGRLSV+  +  +   +FD+ P  F P
Sbjct: 117 LK---FITCIDDMHFMLQKEVVERIAAAHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEP 173

Query: 198 SPKVTSTVIHFIPHL-NPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++   PH  +P      E L+ I  +AF  RRKTL  +LK +   + L+  GI
Sbjct: 174 RPKVDSAIVRLTPHRVSPFESVNTEKLENIVAKAFAMRRKTLTNNLKGIISLSQLNDLGI 233

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           +   R E +S+ ++ ++   +++
Sbjct: 234 DGGKRPEQISVAEYVQLAKFISN 256


>gi|260888713|ref|ZP_05899976.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
 gi|330839885|ref|YP_004414465.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
 gi|260861582|gb|EEX76082.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
 gi|329747649|gb|AEC01006.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
          Length = 288

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/282 (30%), Positives = 137/282 (48%), Gaps = 13/282 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
                + IL  + +   K +GQNFL+D +++K I  ++   +G  V+EIG G G LTQ L
Sbjct: 8   SPAVTRHILKAFGLRASKRLGQNFLVDGSVVKDIVAAAEIEEGDRVLEIGPGIGTLTQGL 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L  GA  V  +E D++   +L +  + + + L I+  D LK D       + P ++ ANL
Sbjct: 68  LEAGAH-VTAVELDKKLPAVLAETLAAY-DHLRIVPGDILKTDIRALME-NQPFKVAANL 124

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L   +           +  + QKEV ER+ A   S  YG LSV   + T+  
Sbjct: 125 PYYITTPILLALLEQHLP---ITHIVTMVQKEVAERMIAAPGSKIYGALSVAVQYHTEPR 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKR 243
           ++ +++P  F P+P+V S+VI       P           ++ + +FG+RRKTL  +L  
Sbjct: 182 IVREVAPRSFIPAPEVASSVIACKKRGKPPVEVTDERMFFRVARASFGQRRKTLANALLG 241

Query: 244 LGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            G         L  A I+   R E LS+ +F R+ +  +  Q
Sbjct: 242 TGASKDAVRRALDAAAIDEKRRGETLSLAEFARLADAFSAMQ 283


>gi|116496022|ref|YP_807756.1| dimethyladenosine transferase (rRNA methylation) [Lactobacillus
           casei ATCC 334]
 gi|116106172|gb|ABJ71314.1| dimethyladenosine transferase [Lactobacillus casei ATCC 334]
          Length = 298

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 93/279 (33%), Positives = 138/279 (49%), Gaps = 18/279 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  +    +K +GQNFL D  IL+KI  ++       VIEIG G G LTQ L    A 
Sbjct: 15  AILKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADS-AH 73

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPY 127
           +V+ +E D +  PIL +  + +PN   ++ +D LK D      + F+    ++++ANLPY
Sbjct: 74  QVVALEIDDRLLPILDETLADYPNA-TVVNEDVLKTDLGALVAEHFDGKHTLKVVANLPY 132

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T +L + + A        S+T++ Q+EV ER++A   S  YG LS+           
Sbjct: 133 YITTPILLHLLRAQLP---LHSMTVMMQREVAERLSATPGSKEYGSLSIAVQLVASVATA 189

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +S H F P+P V S ++       P+       S  ++ + AF  RRKTL  +L  L 
Sbjct: 190 FTVSRHAFVPAPNVDSAIVTLTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNLVVLF 249

Query: 246 GE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           G+       + L  A I+   RAE LSI DF R+   L 
Sbjct: 250 GKTNKAAIRSALTTAAIDPGTRAERLSIADFARLDRALR 288


>gi|238928059|ref|ZP_04659819.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531]
 gi|238884019|gb|EEQ47657.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531]
          Length = 292

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 89/276 (32%), Positives = 144/276 (52%), Gaps = 14/276 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL+ + +   K +GQNFL+D  +++ I +++      TV+EIG G G LTQ L   G
Sbjct: 14  TRHILNAFHLRASKRLGQNFLVDAGVVRAIVDAADLSPADTVLEIGPGIGTLTQGLAESG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPY 127
           AR V+ +E D++   +L +    + N + I+  D LK+D  +  N+      +++ANLPY
Sbjct: 74  AR-VVAVELDKKLPAVLAETLKGYDN-VAIVPGDILKLDILRILNLGAGEQFKVVANLPY 131

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T +L   +           +  + QKEV  R+TA+  S  YG LS+   + T A ++
Sbjct: 132 YITTPILMALLEQHLP---IARMVTMVQKEVAVRMTARPGSKDYGALSIAVQYYTDAHIV 188

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P+P+VTS VI       P   P   +   ++ + AFG+RRKTL  +L   G
Sbjct: 189 MDVPPRAFMPAPEVTSAVIACRVRETPSVCPTDEKLFFRLVRAAFGQRRKTLLNALTGAG 248

Query: 246 GENLL-----HQAGIETNLRAENLSIEDFCRITNIL 276
               L       AG+  ++R E LS+ DF R+++ +
Sbjct: 249 LTKELCRAGLAAAGLAASIRGEQLSLADFARLSDAV 284


>gi|148261607|ref|YP_001235734.1| dimethyladenosine transferase [Acidiphilium cryptum JF-5]
 gi|146403288|gb|ABQ31815.1| dimethyladenosine transferase [Acidiphilium cryptum JF-5]
          Length = 272

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 105/277 (37%), Positives = 162/277 (58%), Gaps = 6/277 (2%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M   +  L+ +++ + +  K+ +GQ+FLLD ++L +IA  +G LDG+ VIE+G GPG LT
Sbjct: 1   MTQGAPPLREVIARHGLSAKRALGQHFLLDPDLLARIARLAGPLDGVNVIEVGPGPGGLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL   A  V  IE D +    + ++++  P RL +++     +D +    + +P  I+
Sbjct: 61  RALLASDAAGVTAIELDPRAVGAVAELAAADPGRLRVLEG--DALDLDLAALVPAPRAIV 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN GT +L  W+        + S+TL+FQ+EV ERI A   SP YGRL+VL     
Sbjct: 119 ANLPYNAGTAMLLRWLHQAAC---FRSMTLMFQREVAERIVAAPGSPAYGRLAVLAALTV 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
           +  ++  + P  F P PKV S V+  +PH + + P  L  ++++T  AFG+RRK LR SL
Sbjct: 176 RGAIVLTLPPGAFSPPPKVDSAVVRLVPHEDQLQPALLAKVERVTAAAFGQRRKMLRGSL 235

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           K LGG  L   AGI+ + RAE L+  +F  +  +L D
Sbjct: 236 KALGGATLAEAAGIDPSRRAETLAPAEFLSLARLLPD 272


>gi|310657782|ref|YP_003935503.1| dimethyladenosine transferase [Clostridium sticklandii DSM 519]
 gi|308824560|emb|CBH20598.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Clostridium
           sticklandii]
          Length = 289

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 94/289 (32%), Positives = 141/289 (48%), Gaps = 19/289 (6%)

Query: 3   MNN-KSHSL-KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MNN  SH + K I+S Y     K +GQNFL+D ++L +I +S+      TVIEIG G G 
Sbjct: 1   MNNLASHKITKDIVSKYGFRFTKSLGQNFLVDEHVLSQIVDSAEIDSEDTVIEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118
           LT+ L    A++VI IE D+   PIL +  +   N ++II  D LK D  +  N  SP  
Sbjct: 61  LTRELSYR-AKQVISIEIDKNLIPILSETLADRDN-IKIINQDILKTDLHELVNEFSPDR 118

Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            ++++ANLPY I T ++  ++         +++ ++ QKEV  RI A  ++  YG LSV 
Sbjct: 119 KVKVVANLPYYITTPIIMRFLEEKVP---LKTMVIMIQKEVANRINAVPSTKDYGSLSVA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRK 235
             +     ++       F P P V S VI      +        +   ++ + AF KRRK
Sbjct: 176 VQYYCDTDIVAKAPKGAFIPEPGVDSAVIKLEVKEDKGIELIDEDLFFEVVKAAFSKRRK 235

Query: 236 TLRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           TL  +L   G        +  L  A I+  LR E L ++ F  + N   
Sbjct: 236 TLLNALSTFGNIGGKQEAKMALEIANIDAQLRGETLDMKQFASLANAYA 284


>gi|326789765|ref|YP_004307586.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427]
 gi|326540529|gb|ADZ82388.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427]
          Length = 288

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 97/293 (33%), Positives = 154/293 (52%), Gaps = 18/293 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M         + I+S Y    +K  GQNFL+D  +L KI +++       VIEIG G G 
Sbjct: 1   MRKIATVEGTRAIISKYPFAFQKKFGQNFLIDPQVLDKIIDAAEITKEDCVIEIGPGIGC 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118
           +TQ LL   A KVI IE D Q  PIL++     P+  ++I +D LKVD        SP  
Sbjct: 61  VTQALLE-KAGKVISIEIDNQLIPILEEQFGAEPH-FKLIHNDVLKVDLAALIAEESPNR 118

Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            I+++ANLPY I T ++   +  +      ES+T++ QKEV +R++++  +  YG ++V 
Sbjct: 119 RIKVVANLPYYITTPIIMALLEDELP---IESITVMVQKEVADRLSSKPGTKQYGAIAVS 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRK 235
             + +   ++ D+  + F PSP V S VI    H  P+     ++ + +I + AF  RRK
Sbjct: 176 VNYFSTPELVVDVPRNCFMPSPNVDSAVIKLNVHEEPLVKTNNVKQMFRIIKAAFLLRRK 235

Query: 236 TLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           TL  +L   G         + LL ++GI    R E LSIE+F R+++ + +++
Sbjct: 236 TLLNTLAAHGDLGIDKERLKELLDESGIGAQTRGETLSIEEFARLSDYIDEHR 288


>gi|313893343|ref|ZP_07826917.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442112|gb|EFR60530.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 284

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 83/273 (30%), Positives = 135/273 (49%), Gaps = 13/273 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ +I  ++    G  V+E+G G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGAD- 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   +L    + + N + I+  D LK+D     N   P +++ANLPY I T 
Sbjct: 74  VTAIELDRRLLEVLDTTLASYDN-VRIVHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + + +       E L ++ QKEV  R+ A+  +  YG LSV   + T+  ++ D+ P
Sbjct: 132 IIMSLLESKLP---IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245
             F P+P VTS+VI  +    P       +   ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLSKDR 248

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            E LL +A I+   R E  ++++F  + N    
Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVANAWAS 281


>gi|160871590|ref|ZP_02061722.1| dimethyladenosine transferase [Rickettsiella grylli]
 gi|159120389|gb|EDP45727.1| dimethyladenosine transferase [Rickettsiella grylli]
          Length = 269

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 89/260 (34%), Positives = 133/260 (51%), Gaps = 7/260 (2%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQ+FL +  I+ KI  +       ++IEIG G G LT+ L+ L    +I IE 
Sbjct: 5   FKTRKRFGQHFLHERTIIDKIIHAIAPKKTDSMIEIGPGLGALTEQLVPL-VHYLIAIEL 63

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   P+L++          I+Q D L VDF     I    R++ NLPYNI T LLF+ I
Sbjct: 64  DKNLIPLLEEKCVGL-GEFMILQGDVLNVDFRTLTKIKCRWRVVGNLPYNISTPLLFHCI 122

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +  +     + +  + QKEV +RI AQ     YGRLSV+  +  +   +F++ P  F P 
Sbjct: 123 NHVSN---IQDMHFMLQKEVADRINAQPGQSSYGRLSVMIQYYCQVEKLFNVKPGAFRPP 179

Query: 199 PKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S VI  IP+         S    +I + AF  RRK LR +L     E+   Q GI 
Sbjct: 180 PKVDSAVIRLIPYRKLPHKAKSSLLFAEIVKNAFNHRRKMLRNNLSYCLQEHDFEQLGIR 239

Query: 257 TNLRAENLSIEDFCRITNIL 276
           +++R E L++ D+ ++ N +
Sbjct: 240 SSVRPEQLAVNDYVKLANFV 259


>gi|329767929|ref|ZP_08259441.1| dimethyladenosine transferase [Gemella haemolysans M341]
 gi|328838592|gb|EGF88195.1| dimethyladenosine transferase [Gemella haemolysans M341]
          Length = 286

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 134/278 (48%), Gaps = 16/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M     +   IL  +    KK +GQNFL+D NIL +I + +G  + I VIEIG G G+LT
Sbjct: 1   MIGTPKNTFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNENIGVIEIGPGIGSLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSP 118
           + L    A+KVI  E D +  PIL +  + + N +EII +D LKVD +K           
Sbjct: 61  EALAK-KAKKVISFEIDGRLLPILSETLADYSN-VEIINNDILKVDVDKIIAEKMSDCEK 118

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I ++ANLPY I T +L + I         +   ++ QKEV  R+ A+  +  Y  L++L 
Sbjct: 119 IMVVANLPYYITTPILTHLIENTEK---IDGYVVMMQKEVANRLNAKVGTKDYNSLTILL 175

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            + T    +F +   VF P+P V S V+  +              K  +  F +RRKTL 
Sbjct: 176 NYYTDVEYLFTVPKKVFVPAPNVESAVVKIMTKETREFETDAKFFKFVRSCFVQRRKTLL 235

Query: 239 QSLKRLGGENLLHQA-------GIETNLRAENLSIEDF 269
            +L    G++             IE   R+E LS+ +F
Sbjct: 236 NNLISSYGKDKKQDLQNACVDSDIEPGRRSETLSLAEF 273


>gi|326772378|ref|ZP_08231663.1| dimethyladenosine transferase [Actinomyces viscosus C505]
 gi|326638511|gb|EGE39412.1| dimethyladenosine transferase [Actinomyces viscosus C505]
          Length = 367

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 136/283 (48%), Gaps = 16/283 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     I P K +GQNF+ D   +++I  ++G     TV+EIG G G+LT  LL
Sbjct: 70  PTEVRGLCQALGIRPTKTLGQNFVHDAGTVRRIVRTAGVRPQDTVLEIGPGLGSLTLALL 129

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIR 120
             GAR VI +E D      L     D       RL +IQ DAL +            P R
Sbjct: 130 ETGAR-VIAVEIDPALARALPVTVADRMPHAAGRLTLIQADALSITGPDSLGEAEPPPTR 188

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+   +L   + A    P  ES+T++ Q EV +R+ A+  S  YG  SV   W
Sbjct: 189 LVANLPYNVAVPVLLTALEA---LPSLESVTVMVQAEVADRLAAEPGSRTYGVPSVKAAW 245

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239
             +A     IS HVF+P P V S ++  +    P      E +  +   AF +RRKTLR+
Sbjct: 246 YAEARRTLTISRHVFWPVPNVDSALVELMRRRPPTTRATREQVFAVVDAAFAQRRKTLRK 305

Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +L +L G     E+ L  A I+   R E L I  F  +  +L 
Sbjct: 306 ALAKLAGGADAAESALRAADIDPTRRGETLDITAFAALAEVLQ 348


>gi|269797689|ref|YP_003311589.1| dimethyladenosine transferase [Veillonella parvula DSM 2008]
 gi|269094318|gb|ACZ24309.1| dimethyladenosine transferase [Veillonella parvula DSM 2008]
          Length = 284

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/272 (31%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ KI  ++    G  V+E+G G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDKIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGAD- 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   +L    + + N + II  D LK+D     N   P +++ANLPY I T 
Sbjct: 74  VTAIELDRRLLEVLDTTLASY-NNVRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + + +       E L ++ QKEV  R+ A+  +  YG LSV   + T+  ++ D+ P
Sbjct: 132 IIMSLLESKLP---IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245
             F P+P VTS+VI  +    P       +   ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            E LL +A I+   R E  ++++F  + N   
Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVANAWA 280


>gi|291455675|ref|ZP_06595065.1| dimethyladenosine transferase [Bifidobacterium breve DSM 20213]
 gi|291382603|gb|EFE90121.1| dimethyladenosine transferase [Bifidobacterium breve DSM 20213]
          Length = 309

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 19/287 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREADVTTNDHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKV--DFEKFFNISSPIR 120
             GA  +  +E D      L    ++      +RL ++  DAL V  D    FN  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPRTVAEFMPEAADRLTVVNRDALTVTPDNVPDFNGDTSFT 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 133 LVANLPYNVATPILLTLLERFDSLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---------CCLESLKKITQEAFG 231
              A  +  I  +VF+P+P V S ++ F  +                 E + ++   AFG
Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYAADDTQAPSHGKSSADRELVFRLIDAAFG 249

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +RRKTL  +LK +        AGI+   R E L++ +F  +   +  
Sbjct: 250 QRRKTLHAALKTIVPAEAFAAAGIDPTRRGETLTVTEFAALAAAVQS 296


>gi|291612514|ref|YP_003522671.1| dimethyladenosine transferase [Sideroxydans lithotrophicus ES-1]
 gi|291582626|gb|ADE10284.1| dimethyladenosine transferase [Sideroxydans lithotrophicus ES-1]
          Length = 264

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 96/264 (36%), Positives = 138/264 (52%), Gaps = 11/264 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               KK  GQNFL+D NI+  I  +        ++EIG G G LT+ LL      + V+E
Sbjct: 9   GHEAKKRFGQNFLVDQNIIADIVRAIRPEADDNMVEIGPGLGALTRPLLKHL-NILHVVE 67

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     LK    Q  +++ I + DALK D   F  +++P+RI+ NLPYNI + LLF++
Sbjct: 68  IDRDIIARLKTDYPQ--DKIVIHEGDALKFD---FATLAAPLRIVGNLPYNISSPLLFHF 122

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                +      +  + Q EV ER+ A  ++P YGRLSV+  +R     + D+ P  F P
Sbjct: 123 ---ADYAARITDMHFMLQNEVVERMVAAPSTPEYGRLSVMLQYRFHMEKLIDVPPQSFRP 179

Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S ++  IP               K+   AFG+RRKTLR +LK    E  L Q GI
Sbjct: 180 APKVDSAIVRMIPIPAGEICVKDEALFAKVVSAAFGQRRKTLRNTLKNYLPEADLLQLGI 239

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
           +  LRAENL + +F  I N L+ +
Sbjct: 240 DPQLRAENLGVPEFALIANHLSGH 263


>gi|116333120|ref|YP_794647.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367]
 gi|122270191|sp|Q03T56|RSMA_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116098467|gb|ABJ63616.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367]
          Length = 296

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 93/297 (31%), Positives = 149/297 (50%), Gaps = 26/297 (8%)

Query: 3   MNNKSHSL------KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGA 56
           M N+   +      K IL+ Y+++ KK +GQNFL DLNIL+ I  +    D   VIEIG 
Sbjct: 1   MTNELPEIGSPARTKAILNRYRLVAKKSLGQNFLSDLNILRNIVAAGDVNDHDNVIEIGP 60

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---- 112
           G G LT+ +    A KV+  E D+   P+L +    + N ++II +D LK +        
Sbjct: 61  GIGALTEQIAKR-AHKVVAFEIDENLLPVLDETLMDYKN-VKIINEDILKANLPAVVADE 118

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           F    P++++ANLPY I T +L   + +      +E++ ++ Q EV ER+ A+  +  YG
Sbjct: 119 FEADRPLKLVANLPYYITTPILMGVLQSTV---RFEAIVVMMQAEVAERLVAEPGTKAYG 175

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAF 230
            LSV+  +R    + F++    F P P V S +I   P       P   ++L    +  F
Sbjct: 176 SLSVIMQYRAHVEIAFNVPRTAFIPQPNVDSAIIRLTPREALPVNPYEDKALFSFVKGCF 235

Query: 231 GKRRKTLRQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
             RRK+L  +L+ + G+          +L+Q GI   LR E L++ +F  +TN   +
Sbjct: 236 AHRRKSLWNNLQGIFGKQPEVRERIETVLNQTGISRQLRPERLTLLNFIELTNAFHN 292


>gi|253995957|ref|YP_003048021.1| dimethyladenosine transferase [Methylotenera mobilis JLW8]
 gi|253982636|gb|ACT47494.1| dimethyladenosine transferase [Methylotenera mobilis JLW8]
          Length = 257

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 95/264 (35%), Positives = 142/264 (53%), Gaps = 11/264 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K I KK  GQNFL D  ++  + ++        ++EIG G G LTQ L+      + V+E
Sbjct: 2   KHIAKKRFGQNFLTDQGVISSLVDAISPKANDLMVEIGPGLGALTQPLMQQL-DMLHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     ++       N++ I   DALK DF    N    IR++ NLPYNI T +LF+ 
Sbjct: 61  VDRDIISWMEKTYVH--NKITIHNSDALKFDFSSLGNA---IRVVGNLPYNISTPILFHL 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++          +  + QKEV ER+ A  ++  YGRLSV+  +R +   +F + P  F P
Sbjct: 116 LNNVA---SIIDMHFMLQKEVVERMVASPSTAAYGRLSVMLQYRLQMEYLFTVPPEAFDP 172

Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S  +  +PH + P P   E+L  ++   AFG+RRKTLR +LK L  +       +
Sbjct: 173 APKVESAFVRCVPHASLPHPADDEALFAQVVTAAFGQRRKTLRNTLKGLLDDEGFKALAL 232

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
           ++ LRAENLS+ DF  I+N L+ N
Sbjct: 233 DSTLRAENLSVADFAGISNYLSQN 256


>gi|306820341|ref|ZP_07453980.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551670|gb|EFM39622.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 287

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 140/286 (48%), Gaps = 18/286 (6%)

Query: 1   MTMNNKSHSLK-TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M  N  S  +   I+  Y     K +GQNFL++ NIL KI ES+       V+EIG G G
Sbjct: 1   MNFNLSSSKITGEIIKKYGFKMTKSLGQNFLINENILDKIIESADISSDDVVLEIGTGIG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---IS 116
            LTQ L    A+KVI +E D+   PIL +  S + N + II  D LK D  +      I+
Sbjct: 61  TLTQRLCE-NAKKVIAVEIDRNLIPILNETLSNYDN-ITIINKDILKTDINEELKNLSIN 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             I+++ANLPY I T ++   +         + + L+ QKEV +R+ A  ++  YG LS+
Sbjct: 119 QKIKVVANLPYYITTPIIMKVLEDKVN---VDCMVLMLQKEVADRMNASPSTKDYGSLSI 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRR 234
              +     ++  +    F P P V S V+  +     N      +   KI + +F KRR
Sbjct: 176 AVQYYCDTAIVCKVPKSSFIPEPNVDSLVLKLVVNEKRNVDISNEDLFFKIVRGSFSKRR 235

Query: 235 KTLRQSLKR---LGGEN----LLHQAGIETNLRAENLSIEDFCRIT 273
           KT+  SL     LG ++    LL  +GI++  R E LSI +F  + 
Sbjct: 236 KTILNSLSNYEDLGDKDKIQKLLEISGIDSKRRGETLSIYEFANLA 281


>gi|238019586|ref|ZP_04600012.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748]
 gi|237863784|gb|EEP65074.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748]
          Length = 284

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ +I  ++    G  V+E+G G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGAD- 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   +L    + + N + I+  D LK+D     N   P +++ANLPY I T 
Sbjct: 74  VTAIELDRRLLEVLDTTLASYDN-VRIVHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + + +       E L ++ QKEV  R+ A+  +  YG LSV   + T+  ++ D+ P
Sbjct: 132 IIMSLLESKLP---IERLVVMVQKEVALRMVAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245
             F P+P VTS+VI  +    P       +   ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFANTMKTTGLSKDR 248

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            E LL +A I+   R E  ++++F  + N   
Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVANAWA 280


>gi|323701639|ref|ZP_08113311.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM
           574]
 gi|323533412|gb|EGB23279.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM
           574]
          Length = 296

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 142/291 (48%), Gaps = 22/291 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       +++ I+  +    +K +GQNFL+D NI+ KI  ++   +     EIG G G 
Sbjct: 1   MRELTSPTTVREIIKAHGFKVRKALGQNFLMDANIIDKIVRAANLSENDLAFEIGPGLGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115
           LT+ L    A +V+ +E DQ   PIL +  +  P + E+IQ DA KVDF++         
Sbjct: 61  LTRRLAQE-AGRVLAVEIDQNLLPILNETLADLP-KAEVIQADARKVDFDQLAAERTQGQ 118

Query: 116 ----SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
                   +++ANLPY I T LL       T     E L ++ QKEV +R+ A      Y
Sbjct: 119 FGPGGKAYKLVANLPYYITTPLLL---HLLTSGFNLELLVVMIQKEVADRLQASPGGKDY 175

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEA 229
           G LSV+  + T   ++  +   VF+P P V S VI       P       E+  K+ + A
Sbjct: 176 GSLSVVVQYYTVPEIVCKVPKTVFYPVPDVDSAVIRLTRRPVPPVQLRNEETFFKVVRAA 235

Query: 230 FGKRRKTLRQSLKRLGGE------NLLHQAGIETNLRAENLSIEDFCRITN 274
           FG+RRKTL  +L   G        ++L++ G++   R E LS+E+F  + N
Sbjct: 236 FGQRRKTLINALTGSGLASKETWLSVLNETGLDPARRGETLSLEEFAALAN 286


>gi|188992955|ref|YP_001904965.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|226732640|sp|B0RUI3|RSMA_XANCB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|167734715|emb|CAP52925.1| Dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris]
          Length = 262

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 85/257 (33%), Positives = 130/257 (50%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL      + VIE D+
Sbjct: 9   AKKSLGQHFLADRYYIDRIVQAVDPRPGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L D ++    +L+II  D L VDF    +  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTDAAAPI-GQLQIIHRDVLAVDFTAVAD-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
            +       +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PK
Sbjct: 126 ASA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182

Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +P           +    + +  FG+RRKTLR +L  +        AG+  +
Sbjct: 183 VDSAVVRLVPRDAASVLIKDRKRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAGVRPD 242

Query: 259 LRAENLSIEDFCRITNI 275
            RAE L + DF R+ N+
Sbjct: 243 ARAEQLEVADFIRLANV 259


>gi|315924856|ref|ZP_07921073.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621755|gb|EFV01719.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 295

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 140/289 (48%), Gaps = 17/289 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + +  ++ ++  +++   K  GQNFL+D +IL KIA +       TVIEIG G G 
Sbjct: 1   MKLTSPT-MVEALMQRHELHFNKRFGQNFLIDDHILDKIARAGDLTPTDTVIEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118
           LT+ L    A +VI +E D +  P L +  +   N + ++  D LK D       ++P  
Sbjct: 60  LTRELSAR-AGQVIAVEIDHKLIPALGETLADCGN-VHVVNADVLKTDLAALVAEAAPGT 117

Query: 119 --IRIIANLPYNIGTRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRL 174
             ++++ANLPY I T ++   +    WP       +  L Q+EVGERI A      YG L
Sbjct: 118 ARLKVVANLPYYITTPIMMQLLETR-WPDGVALAQMVFLVQREVGERICAAPGGKIYGSL 176

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKR 233
           S+   +  +  + F +   VF P PKV S VI       P  P   +   ++ + AF  R
Sbjct: 177 SIACQYYARPEIAFAVPATVFMPRPKVDSVVIAMKKATPPYAPSDPDQFFRVVKAAFMNR 236

Query: 234 RKTLRQSL--KRLGGENLL----HQAGIETNLRAENLSIEDFCRITNIL 276
           RKTL  SL       ++ L     +AGI+  +RAE L    FC + N L
Sbjct: 237 RKTLINSLTTNTAYTKDQLLAAMAEAGIDPKVRAEKLDGTGFCALANAL 285


>gi|313896764|ref|ZP_07830312.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974681|gb|EFR40148.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 291

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 146/278 (52%), Gaps = 14/278 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL+ + +   K +GQNFL+D  +++ I E++      TV+EIG G G LTQ L   G
Sbjct: 14  TRHILNAFHLRASKRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETG 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPY 127
           AR V+ +E D++   +L +    + N + ++  D LK++  +          +++ANLPY
Sbjct: 74  AR-VVAVELDKKLPAVLAETLRGYDN-VTVVPGDILKINIPETLGLKEGQRFKVVANLPY 131

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++   +         E L  + QKEV  R+TAQ  S  YG LS+   + T   M+
Sbjct: 132 YITTPIIMTLLEQRLP---IERLVTMVQKEVAMRMTAQPGSKDYGALSLAVQYFTAPRMV 188

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            D+ P  F P+P+VTS V+  I   +P   P   +   ++ + AFG+RRKTL  +L   G
Sbjct: 189 MDVPPRAFRPAPEVTSAVVACIVRESPSVAPRSEKLFFRLIRAAFGQRRKTLPNALVGAG 248

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 +  L  AGI  + R E LS++DF RI++ + D
Sbjct: 249 LTKDAAQAALRAAGIAGSTRGEQLSLQDFARISDAVGD 286


>gi|227487807|ref|ZP_03918123.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227092309|gb|EEI27621.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 286

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 138/286 (48%), Gaps = 20/286 (6%)

Query: 3   MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MN+         ++ + +   I+P K +GQNFL D N ++ I  ++G      VIE+G G
Sbjct: 1   MNDSPRLLGPAEIRALAAQLDIVPTKKLGQNFLHDPNTVRMIVAAAGLEPDDRVIEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFF 113
            G+LT  L+      V  +E D++    L    + H      RL ++  DAL V  E  F
Sbjct: 61  LGSLTLGLVGE-VSAVTAVEIDRRLAEQLPKTVADHAPGCAERLSVVNADALAVTREA-F 118

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
             + P  I+ANLPYN+   +L + +      P    + ++ Q+EV +R++A   +  YG 
Sbjct: 119 GEAEPTAIVANLPYNVAVPVLLHLLRT---VPSIRRVLVMVQEEVADRLSASPGTKIYGV 175

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGK 232
            SV   +  +      +  HVF+P+P V+S ++       NP     E+L  +   AF +
Sbjct: 176 PSVKASYFGEVKKAGTVGKHVFWPAPNVSSGLVRIDCFESNPWGVSPEALFPLVDAAFAQ 235

Query: 233 RRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           RRKTLR +L    G     E +L  AGI+   R E L +++F RI 
Sbjct: 236 RRKTLRAALGSFFGGADRAEAILTAAGIDPRQRGEKLGVDEFVRIA 281


>gi|260663712|ref|ZP_05864600.1| dimethyladenosine transferase [Lactobacillus fermentum 28-3-CHN]
 gi|260551763|gb|EEX24879.1| dimethyladenosine transferase [Lactobacillus fermentum 28-3-CHN]
          Length = 295

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 146/292 (50%), Gaps = 22/292 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
                + I++ Y I  KK  GQNFL + ++L  I  ++G      VIEIG G G LT+ L
Sbjct: 7   SPSRTRAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKL 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIR 120
               A +V+ +E D+   P+L D+ + + N + ++  D LK +          + + P++
Sbjct: 67  A-QAAGEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVK 124

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I + +LF  +++      W ++ ++ QKEV +R+ A+  +  YG L++   +
Sbjct: 125 VVANLPYYITSPILFALLASQV---EWAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDY 181

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTL 237
           R    + F++S   F P+P V S ++        +P      + L  + +  F  RRK+L
Sbjct: 182 RMDVKVAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFGLIRGCFAHRRKSL 241

Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +LK + G++         +L +  I+   R E LS+ DF  + N + + +
Sbjct: 242 WNNLKTIVGKDEDRLGKVKEVLDRLEIDPQTRPERLSLVDFINLANAMHEKK 293


>gi|21230265|ref|NP_636182.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769742|ref|YP_244504.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|27151570|sp|Q8PCE3|RSMA_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|81304304|sp|Q4UR39|RSMA_XANC8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21111810|gb|AAM40106.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575074|gb|AAY50484.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 262

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/257 (33%), Positives = 129/257 (50%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL      + VIE D+
Sbjct: 9   AKKSLGQHFLADRYYIDRIVQAVDPRPGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L D ++    +L+II  D L VDF    +  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTDAAAPI-GQLQIIHRDVLAVDFTAVAD-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PK
Sbjct: 126 AGA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182

Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +P           +    + +  FG+RRKTLR +L  +        AG+  +
Sbjct: 183 VDSAVVRLVPRDAASVLIKDRKRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAGVRPD 242

Query: 259 LRAENLSIEDFCRITNI 275
            RAE L + DF R+ N+
Sbjct: 243 ARAEQLEVADFIRLANV 259


>gi|256848354|ref|ZP_05553797.1| dimethyladenosine transferase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714952|gb|EEU29930.1| dimethyladenosine transferase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 298

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 151/303 (49%), Gaps = 26/303 (8%)

Query: 1   MTM----NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGA 56
           M M       S   + I+  Y I  KK  GQNFL DLN+L  I +++       VIEIG+
Sbjct: 1   MKMAISEIGSSQRTREIIKKYGIHAKKGFGQNFLTDLNVLTGIVDAAQITKQDNVIEIGS 60

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEK 111
           G G LT+ L    A +V+ +E D    P+L D+ S + N +++I  D LK +      E+
Sbjct: 61  GLGALTEQLAKS-AGEVVALEIDTDLLPLLADVLSPYKN-VKVINQDVLKANLPKLIQEE 118

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           F + S P++++ANLPY I + +L N +++      W ++ ++ QKEV ER+TA+  +  Y
Sbjct: 119 FTDPSRPVKVVANLPYYITSPILMNLLNSSVQ---WAAICVMMQKEVAERLTAKVGTKQY 175

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQE 228
           G L++   +   A + F +S H F P+P V S ++   P    +   P     L  + + 
Sbjct: 176 GALTLAIEYSMTAQLAFGVSRHSFVPAPNVDSAIVVLTPRTTALTEQPFDQAKLFSLIKT 235

Query: 229 AFGKRRKTLRQSLKRL---------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            F  RRK L  +LK L           ++ L    I +  R E LS+  F ++ N L + 
Sbjct: 236 CFAHRRKNLWNNLKPLMRKNKTKQQAVKDALDHLQIASTDRPETLSLLQFIQLANGLHEK 295

Query: 280 QDI 282
           Q I
Sbjct: 296 QII 298


>gi|222152162|ref|YP_002561322.1| dimethyladenosine transferase [Macrococcus caseolyticus JCSC5402]
 gi|254807873|sp|B9E8V8|RSMA_MACCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|222121291|dbj|BAH18626.1| dimethyladenosine transferase [Macrococcus caseolyticus JCSC5402]
          Length = 296

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 147/291 (50%), Gaps = 22/291 (7%)

Query: 1   MTMNNKSHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           M  N+ +   +T  +L  Y    KK +GQNFL+D N+++ I E++G      VIEIG G 
Sbjct: 1   MEYNDIATPTRTKQLLDQYGFKFKKSLGQNFLVDTNVIRNIIEAAGIDKTSGVIEIGPGM 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFN 114
           G+LT+ L    A++V+  E DQ+  PIL +  S + N + +I +D LK D     E + +
Sbjct: 61  GSLTEQLAKH-AKQVLAFEIDQRLIPILGETLSPYDN-VTVINEDILKADVASAIETYLH 118

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
               I ++ANLPY I T +L   +  +       S  ++ QKEVGER++A  ++  YG L
Sbjct: 119 HCDEIFVVANLPYYITTPILMGLLEKNLN---INSYVVMMQKEVGERLSAIPSTKAYGSL 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232
           S+   + T    +  +   VF P P V S V+       P     +     K+T+ AF +
Sbjct: 176 SIAVQYYTDVKRIMVVPKGVFMPPPNVDSLVVKLTTLERPRVDVEDENLFFKLTRGAFVQ 235

Query: 233 RRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
           RRKT+  +   L  +           L  +G+  + R E+L++ D+ +++N
Sbjct: 236 RRKTILNNYMSLIQDSKEHKSRIIEWLEASGVAPSRRGESLNLNDYAQLSN 286


>gi|50513341|pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
           Conserved Adenosine Dimethyltransferase
 gi|50513342|pdb|1QYR|B Chain B, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
           Conserved Adenosine Dimethyltransferase
          Length = 252

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/256 (34%), Positives = 132/256 (51%), Gaps = 8/256 (3%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNFL D  ++  I  +     G  ++EIG G   LT+ +      ++ VIE D+     L
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARL 59

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           +        +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S   +  
Sbjct: 60  Q-THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS---YTD 115

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
               +  + QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PKV S V
Sbjct: 116 AIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAV 175

Query: 206 IHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           +  +PH   P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+  +RAEN
Sbjct: 176 VRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAEN 235

Query: 264 LSIEDFCRITNILTDN 279
           +S+  +C++ N L +N
Sbjct: 236 ISVAQYCQMANYLAEN 251


>gi|325917326|ref|ZP_08179544.1| dimethyladenosine transferase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536460|gb|EGD08238.1| dimethyladenosine transferase [Xanthomonas vesicatoria ATCC 35937]
          Length = 262

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/257 (33%), Positives = 126/257 (49%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL      + VIE D+
Sbjct: 9   AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L + ++     L II  D L VDF    N  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTEAAAPI-GELSIIHRDVLSVDFTDVAN-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PK
Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182

Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +P                + +  FG+RRKTLR +L  +        AG+  +
Sbjct: 183 VDSAVVRLVPRDPATVMINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAGVRPD 242

Query: 259 LRAENLSIEDFCRITNI 275
            RAE L + DF R+ N+
Sbjct: 243 ARAEQLEVADFIRLANV 259


>gi|300114051|ref|YP_003760626.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113]
 gi|299539988|gb|ADJ28305.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113]
          Length = 264

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 7/269 (2%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++      +K  GQ+FL D  +++++  +     G  ++EIG G G LT  LL     ++
Sbjct: 1   MNLLGHRARKRFGQHFLHDQQVIERLIRAIKPKLGDLMVEIGPGQGALTLPLLH-CLGQL 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             IE D+     L +  +     L +   D+L  DF    + +  +R++ NLPYNI T L
Sbjct: 60  EAIELDRDLAAYLIERCAS-EGNLRLHNVDSLTFDFRTLAHDNRRLRVVGNLPYNISTPL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +         E +  + Q+EV  R+ A+     YGRLSV+  +  +   +F +   
Sbjct: 119 LFHLLGQVG---ILEDMHFMLQREVVTRLAAKPGGKDYGRLSVMVQFYCEVEPLFTVKSG 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P PKV S V+   PH   +   +  E+L ++  +AF +RRKTL  +LK L     L 
Sbjct: 176 AFVPPPKVDSMVVRLRPHQPSLAPNISHEALNRVVSQAFSQRRKTLANALKGLLSSAELI 235

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280
             GI+   R E +S+E +  +T      Q
Sbjct: 236 ALGIDPRQRPETVSLEHYLALTRYWLQAQ 264


>gi|291547608|emb|CBL20716.1| dimethyladenosine transferase [Ruminococcus sp. SR1/5]
          Length = 291

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 147/292 (50%), Gaps = 19/292 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N  +++  +L  Y  + +K  GQNFL+D ++L+KI ESSG      ++EIG G G +T
Sbjct: 6   LGNPKYTI-EVLQKYHFVFQKRFGQNFLIDEHVLEKIIESSGITKDDFILEIGPGIGTMT 64

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPI 119
           Q L         V   D    PILKD      N + +I +D LK D +K  +      P+
Sbjct: 65  QYLAEAAREVAAVE-IDSSLIPILKDTLKDWDN-VSVINNDILKTDIKKIADEKNGGKPV 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++      +      +S+T++ QKEV +R+     +  YG LS+   
Sbjct: 123 KVVANLPYYITTPIIMGLFEKNVP---VDSITVMVQKEVADRMQVGPGTKDYGALSLAVQ 179

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTL 237
           +  K  ++ ++ P+ F P PKV S VI    +  P     +   + ++ + +F +RRKTL
Sbjct: 180 YYAKPEIVANVPPNCFMPRPKVGSAVIKLTRYEKPPVDVKDEGLMFRLIRASFNQRRKTL 239

Query: 238 RQ--------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
                     SL +   E++ ++  +  N+R E L++E F  + N + D ++
Sbjct: 240 VNGIRNSGDFSLSKEEIEDVFNRCDLPLNIRGEALTLEQFAMLANCIYDEKN 291


>gi|227542448|ref|ZP_03972497.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181646|gb|EEI62618.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 286

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 138/286 (48%), Gaps = 20/286 (6%)

Query: 3   MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MN+         ++ + +   I+P K +GQNFL D N ++ I  ++G      VIE+G G
Sbjct: 1   MNDSPRLLGPAEIRALAAQLDIVPTKKLGQNFLHDPNTVRMIVAAAGLEPDDRVIEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFF 113
            G+LT  L+      V  +E D++    L    + H      RL ++ +DAL V  E  F
Sbjct: 61  LGSLTLGLVGE-VSAVTAVEIDRRLAEQLPKTVADHAPGCAERLSVVNEDALAVTREA-F 118

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
             + P  I+ANLPYN+   +L + +      P    + ++ Q+EV +R++A   +  YG 
Sbjct: 119 GEAEPTAIVANLPYNVAVPVLLHLLRT---VPSIRRVLVMVQEEVADRLSASPGTKIYGV 175

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGK 232
            SV   +  +      +  HVF+P+P V+S ++       NP     E L  +   AF +
Sbjct: 176 PSVKASYFGEVKKAGTVGKHVFWPAPNVSSGLVRIDCFESNPWGVSPEVLFPLVDAAFAQ 235

Query: 233 RRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           RRKTLR +L    G     E +L  AGI+   R E L +++F RI 
Sbjct: 236 RRKTLRAALGSFFGGADRAEAILTAAGIDPRQRGEKLGVDEFVRIA 281


>gi|285019524|ref|YP_003377235.1| dimethyladenosine transferase [Xanthomonas albilineans GPE PC73]
 gi|283474742|emb|CBA17241.1| probable dimethyladenosine transferase protein [Xanthomonas
           albilineans]
          Length = 264

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/261 (31%), Positives = 126/261 (48%), Gaps = 8/261 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           +    KK +GQ+FL D + +  I  +     G  ++EIG G G +T  LL     ++ VI
Sbjct: 7   FGAPAKKSLGQHFLSDRHYIDNIVRAVDPKPGDRLVEIGPGQGAITFPLLRR-HGQLTVI 65

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+     L   ++ +   L I+  D L VDF         IR++ NLPYNI + +LF+
Sbjct: 66  EFDRDLIEPL-TTAAANLGELTILHRDVLSVDFGAMAGDGR-IRLVGNLPYNISSPILFH 123

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F 
Sbjct: 124 ALDHAAA---ITDMHFMLQKEVVDRMAAAPGSKVYGRLSVMLQAYCEVTALFVVPPGAFR 180

Query: 197 PSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S V+  +P                + + AFG+RRKTLR +L  +        AG
Sbjct: 181 PPPKVDSAVVRLVPRTAQEVGIADPRRFADVVRAAFGQRRKTLRNALNGVCDAPQFEAAG 240

Query: 255 IETNLRAENLSIEDFCRITNI 275
           +  + RAE L++ DF R+ N+
Sbjct: 241 VRADARAEQLAVADFVRLANL 261


>gi|303256197|ref|ZP_07342213.1| dimethyladenosine transferase [Burkholderiales bacterium 1_1_47]
 gi|331001253|ref|ZP_08324879.1| dimethyladenosine transferase [Parasutterella excrementihominis YIT
           11859]
 gi|302860926|gb|EFL84001.1| dimethyladenosine transferase [Burkholderiales bacterium 1_1_47]
 gi|329568980|gb|EGG50776.1| dimethyladenosine transferase [Parasutterella excrementihominis YIT
           11859]
          Length = 274

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 91/267 (34%), Positives = 144/267 (53%), Gaps = 9/267 (3%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +  +L H+K   +K  GQNFL D   + KIAE+    +G  +IEIG G   LT+ L+  G
Sbjct: 1   MAEVLKHHK--ARKRFGQNFLNDDFWINKIAEAVDPKEGQKIIEIGPGQAALTKELIA-G 57

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+ +  +E D+     L+   +  P +L +++ DALK D+   F     IR++ NLPYNI
Sbjct: 58  AKHIYCVEIDRDLAAWLRTKFT--PEQLTVLEADALKFDWRD-FAAEEKIRVVGNLPYNI 114

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF                 + QKEV +R+ A   S  YGRLSV+   + +   +FD
Sbjct: 115 SSPLLFKL---SEISDRVVDQHFMLQKEVVDRMVAAPGSKAYGRLSVMLQRKYRMVKLFD 171

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P+PKV S+V+  IP  NP     E+  ++   +F  RRKTL+ +L +     +
Sbjct: 172 VPPEAFTPAPKVMSSVVRMIPIQNPAEVDEETFHQVVAASFAMRRKTLKNNLAKWISPEM 231

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           + +AGI+   RAE++ +E+F R+  ++
Sbjct: 232 MEEAGIKPEQRAESVPLENFIRLARLV 258


>gi|256374794|ref|YP_003098454.1| dimethyladenosine transferase [Actinosynnema mirum DSM 43827]
 gi|255919097|gb|ACU34608.1| dimethyladenosine transferase [Actinosynnema mirum DSM 43827]
          Length = 298

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 130/279 (46%), Gaps = 16/279 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K +GQNF+ D N ++KI  ++       V+E+G G G+LT  LL
Sbjct: 22  PADVRRLAAELDVRPTKKLGQNFVHDPNTVRKIVAAANLRPDDVVLEVGPGLGSLTLALL 81

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A  ++ +E D      L     + +      L ++  DA++V   +     +P  ++
Sbjct: 82  PACAD-LVAVEIDPVLAARLPTTAAERAPSLAANLSVVTADAMRVTAAQL--PHAPTALV 138

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + ++     P   +  ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 139 ANLPYNVAVPVVLHLLAE---LPSLRTGLVMVQSEVADRMAAGPGSKVYGVPSVKLAWYA 195

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
            A     +   VF+P P V S ++ F     P+     E L  +   AF +RRKTLR +L
Sbjct: 196 DARRAGPVGRSVFWPVPNVDSALVGFTRRDAPLSDVPREVLFPLVDAAFAQRRKTLRAAL 255

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E  L  AG++ + R E LS+ DF RI  +
Sbjct: 256 SGWAGSAAEAERRLVAAGVDPSARGEQLSVADFVRIAEV 294


>gi|306824012|ref|ZP_07457386.1| dimethyladenosine transferase [Bifidobacterium dentium ATCC 27679]
 gi|309801986|ref|ZP_07696100.1| dimethyladenosine transferase [Bifidobacterium dentium JCVIHMP022]
 gi|304553010|gb|EFM40923.1| dimethyladenosine transferase [Bifidobacterium dentium ATCC 27679]
 gi|308221434|gb|EFO77732.1| dimethyladenosine transferase [Bifidobacterium dentium JCVIHMP022]
          Length = 316

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 130/286 (45%), Gaps = 20/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I     I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L
Sbjct: 25  AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 84

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D      L +  ++       R  +I  DAL V  E    F+      
Sbjct: 85  ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 143

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 144 LVANLPYNVATPILLTLLERFDNLHSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 200

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL----------NPIPCCLESLKKITQEAF 230
              A     I  +VF+P+P V S ++ F  +           N      E++ ++   AF
Sbjct: 201 YGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSANGPAAKRETVFRLIDAAF 260

Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           G+RRKTL  +L+R   +     AGI+   R E L+I++F  +   L
Sbjct: 261 GQRRKTLHAALRRFVPDETFDMAGIDPTRRGETLTIDEFVALARAL 306


>gi|171741750|ref|ZP_02917557.1| hypothetical protein BIFDEN_00841 [Bifidobacterium dentium ATCC
           27678]
 gi|171277364|gb|EDT45025.1| hypothetical protein BIFDEN_00841 [Bifidobacterium dentium ATCC
           27678]
          Length = 316

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 130/286 (45%), Gaps = 20/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I     I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L
Sbjct: 25  AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 84

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D      L +  ++       R  +I  DAL V  E    F+      
Sbjct: 85  ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 143

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 144 LVANLPYNVATPILLTLLERFDNLHSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 200

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL----------NPIPCCLESLKKITQEAF 230
              A     I  +VF+P+P V S ++ F  +           +      E++ ++   AF
Sbjct: 201 YGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSADGPAAKRETVFRLIDAAF 260

Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           G+RRKTL  +L+R   +     AGI+   R E L+I++F  +   L
Sbjct: 261 GQRRKTLHAALRRFVPDEAFDMAGIDPTRRGETLTIDEFVALARAL 306


>gi|148652714|ref|YP_001279807.1| dimethyladenosine transferase [Psychrobacter sp. PRwf-1]
 gi|148571798|gb|ABQ93857.1| dimethyladenosine transferase [Psychrobacter sp. PRwf-1]
          Length = 296

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/294 (32%), Positives = 140/294 (47%), Gaps = 18/294 (6%)

Query: 1   MTMNN-KSHSLKTILSHY-KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           MT ++   H L   L    K  P+K  GQNFL D +I+ +I ++ G      ++EIG G 
Sbjct: 1   MTQSDITKHPLHNTLQRAAKHQPRKRFGQNFLHDASIISEIVDAIGLNRDDNLVEIGPGM 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI-- 115
           G LT+ LL      + VIE D+     L+  I +       I+  +A++ D+   ++   
Sbjct: 61  GALTEPLLEQ-VDAMTVIELDRDLAGSLRIRIGANSHPNFTIVNANAMQFDYHSLYDADS 119

Query: 116 --SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                +R++ NLPYNI T LLF  +         E +  + QKEV ERITA+  S  YGR
Sbjct: 120 ETPKKLRVVGNLPYNISTPLLFTLLEYAD---IIEDMHFMLQKEVVERITAEVGSKIYGR 176

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFG 231
           LSV+  +      +  +    F P PKVTS V    PH   P+    E L   + +E F 
Sbjct: 177 LSVIMQYFCDTQYLLTVPRGAFNPPPKVTSAVFRLRPHQVKPVQADDEKLFALVVRETFN 236

Query: 232 KRRKTLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            RRKTLR   K+        +  L   GI+ N R E L + DF  ++N++   Q
Sbjct: 237 HRRKTLRAIFKQSSLMPTLTDEDLASIGIDGNARPETLDVNDFVALSNLVIAKQ 290


>gi|153206938|ref|ZP_01945756.1| dimethyladenosine transferase [Coxiella burnetii 'MSU Goat Q177']
 gi|212219490|ref|YP_002306277.1| dimethyladenosine transferase [Coxiella burnetii CbuK_Q154]
 gi|226729772|sp|B6J641|RSMA_COXB1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120577011|gb|EAX33635.1| dimethyladenosine transferase [Coxiella burnetii 'MSU Goat Q177']
 gi|212013752|gb|ACJ21132.1| dimethyladenosine transferase [Coxiella burnetii CbuK_Q154]
          Length = 258

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/261 (37%), Positives = 142/261 (54%), Gaps = 8/261 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  +K  GQ+FL D  +L+KI  +       T++EIG G G LT  LLT     + ++E
Sbjct: 3   KMPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   +Q  N + I Q+DAL+ DF        P+R++ NLPYNI T LLF+ 
Sbjct: 62  IDRDLVAFLQKKYNQQKN-ITIYQNDALQFDFSS-AKTDKPLRVVGNLPYNISTPLLFHL 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
            S        E +  + QKEV  RITA+  S  YGRLSV+  +    T +F +SP  F P
Sbjct: 120 FSQIHC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTP 176

Query: 198 SPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P+V S +I  IP  N  P+   L+ L  + +EAF  RRKT+  +LK+L   +      I
Sbjct: 177 PPRVESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEI 236

Query: 256 ETNLRAENLSIEDFCRITNIL 276
              LR + L++EDF +I+NIL
Sbjct: 237 NPQLRPQELTVEDFVKISNIL 257


>gi|241888685|ref|ZP_04775992.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379]
 gi|241864708|gb|EER69083.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379]
          Length = 286

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 16/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M         IL  +    KK +GQNFL+D NIL +I + +G    + VIEIG G G+LT
Sbjct: 1   MIGTPKKTFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNGNVGVIEIGPGIGSLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSP 118
           + L    A+KVI  E D +  PIL +  + +PN +EII +D LKVD +K           
Sbjct: 61  EALAK-KAKKVISFEIDGRLLPILSETLADYPN-VEIINNDILKVDVDKIIAEKMSDCEK 118

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I ++ANLPY I T +L + I         +   ++ QKEV  R+ A+  +  Y  L++L 
Sbjct: 119 IMVVANLPYYITTPILTHLIENTEK---IDGYVVMMQKEVANRLNAKVGTKDYNSLTILL 175

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            + T    +F +   VF P+P V S V+  +              K  +  F +RRKTL 
Sbjct: 176 NYYTNVEYLFTVPKKVFVPAPNVESAVVKIMTKETREFETDAKFFKFVRSCFVQRRKTLL 235

Query: 239 QSLKRLGGENLLHQA-------GIETNLRAENLSIEDF 269
            +L    G++             IE   R+E LS+ +F
Sbjct: 236 NNLISSYGKDKKQDLQNACVDSDIEPGRRSETLSLVEF 273


>gi|300705123|ref|YP_003746726.1| s-adenosylmethionine-6-n',n'-adenosyl (rRNA) dimethyltransferase
           [Ralstonia solanacearum CFBP2957]
 gi|299072787|emb|CBJ44142.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Ralstonia solanacearum CFBP2957]
          Length = 281

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 119/265 (44%), Gaps = 11/265 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+      + V
Sbjct: 9   HQGHQARKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVP-TLQV 67

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+       ++L +   DAL  DF        P+RI+ NLPYNI + LLF
Sbjct: 68  VELDRDLVARLQRRFG---DKLVVHAGDALAFDFGALHVPGRPLRIVGNLPYNISSPLLF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +         + QKEV ER+ A   S  + RLSV+   R    ++ D+ P  F
Sbjct: 125 HL---SAFADRVRDQHFMLQKEVVERMVAAPGSKAFSRLSVMLQVRYYMELVLDVPPGSF 181

Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            P PKV S V+  IP         P  + +L  +   AF +RRK LR +L  L       
Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDMRALGTVVALAFSQRRKVLRNTLGSLREAIDFD 241

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
             G +   RAE + + DF  + N L
Sbjct: 242 ALGFDLGRRAEEVPVADFVAVANAL 266


>gi|165918726|ref|ZP_02218812.1| dimethyladenosine transferase [Coxiella burnetii RSA 334]
 gi|212213440|ref|YP_002304376.1| dimethyladenosine transferase [Coxiella burnetii CbuG_Q212]
 gi|215919310|ref|NP_820957.2| dimethyladenosine transferase [Coxiella burnetii RSA 493]
 gi|218511667|sp|Q83AC2|RSMA_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729773|sp|B6J3A6|RSMA_COXB2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|165917554|gb|EDR36158.1| dimethyladenosine transferase [Coxiella burnetii RSA 334]
 gi|206584195|gb|AAO91471.2| dimethyladenosine transferase [Coxiella burnetii RSA 493]
 gi|212011850|gb|ACJ19231.1| dimethyladenosine transferase [Coxiella burnetii CbuG_Q212]
          Length = 258

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/261 (37%), Positives = 142/261 (54%), Gaps = 8/261 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  +K  GQ+FL D  +L+KI  +       T++EIG G G LT  LLT     + ++E
Sbjct: 3   KMPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   +Q  N + I Q+DAL+ DF        P+R++ NLPYNI T LLF+ 
Sbjct: 62  IDRDLVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHL 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
            S        E +  + QKEV  RITA+  S  YGRLSV+  +    T +F +SP  F P
Sbjct: 120 FSQIHC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTP 176

Query: 198 SPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P+V S +I  IP  N  P+   L+ L  + +EAF  RRKT+  +LK+L   +      I
Sbjct: 177 PPRVESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEI 236

Query: 256 ETNLRAENLSIEDFCRITNIL 276
              LR + L++EDF +I+NIL
Sbjct: 237 NPQLRPQELTVEDFVKISNIL 257


>gi|83032434|gb|ABB97063.1| mitochondrial transcription factor B-like protein [Acanthamoeba
           castellanii]
          Length = 307

 Score =  272 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 167/298 (56%), Gaps = 17/298 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       + + ++  Y++   K + QNF+LDLN+  K+A ++G L G TVIE+G GPG+
Sbjct: 1   MLKLPPMPTPRELVRLYRLSAVKELSQNFILDLNVTDKLARAAGPLRGSTVIEVGPGPGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--- 117
           LT+ LLT GARKVIV+EKD++F P L+ +      RLE++  D LK+D            
Sbjct: 61  LTRSLLTNGARKVIVVEKDKRFMPALETLQQASGGRLELVFGDMLKIDERDLLKNEPKAE 120

Query: 118 ------PIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQK 166
                 P+RI+ NLP+ + T LL  W+         +     S+TL+FQ EVG+RI A+ 
Sbjct: 121 NWADESPVRIVGNLPFAVATELLLKWLRQIPEREGPFAHGRASMTLMFQLEVGKRIEARS 180

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKI 225
            +  YGRLSV+T     A   F++   VF P PKVT T++   P + P+ P  ++ L+ +
Sbjct: 181 GTSEYGRLSVMTQQSCTAQTCFNVPASVFVPPPKVTGTMVRIEPRVTPLAPAPVKELEVV 240

Query: 226 TQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            ++ FG+RRK L  ++  L  G   L+ +AG++   R + L++E++C +     +  D
Sbjct: 241 CRQVFGQRRKMLSNAITTLGEGSLPLIARAGLDPTKRPDALTVEEWCSLARAYKEWMD 298


>gi|134097408|ref|YP_001103069.1| dimethyladenosine transferase [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004602|ref|ZP_06562575.1| dimethyladenosine transferase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910031|emb|CAM00143.1| dimethyladenosine transferase (rRNA methylation) [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 282

 Score =  272 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 14/278 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     I P K +GQNF+ D N +++I  ++       V+E+G G G+LT  LL
Sbjct: 4   PADVRRLAGELGIRPTKKLGQNFVHDPNTVRRIVAAASLTAEDVVLEVGPGLGSLTLALL 63

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
            + A  V  +E D      L+  +S++      RL +++ DAL+V  +   +   P  ++
Sbjct: 64  PV-AGAVTAVEIDPVLAARLERTASEYSPALAGRLRVVEADALRVRADDLGD-RRPTALV 121

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + ++     P      ++ Q EV +R+ A+  +  YG  S    W  
Sbjct: 122 ANLPYNVAVPVVLHLLAE---LPTLRHGLVMVQSEVADRMAARPGNRTYGVPSAKAAWFA 178

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
                  +  +VF+P P V S ++ F     P       + ++   AF +RRKTLR +L 
Sbjct: 179 DVRRAGPVPRNVFWPVPNVDSGLVSFTRVEPPSEVARADVFRVVDAAFAQRRKTLRAALS 238

Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
              G     E LL  AG++   R E L I DF RI   
Sbjct: 239 GWAGSAARAERLLRAAGVDPAARGEQLEIADFARIAEA 276


>gi|289177753|gb|ADC84999.1| Dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 331

 Score =  272 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 17/285 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   ++KI   +G   G  V+E+G G G+LT  +L
Sbjct: 48  AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVREAGVDAGDQVMEVGPGLGSLTLAIL 107

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISS--PIR 120
             GA  +  +E D      L    ++      NR  ++  DALKV   +   ++      
Sbjct: 108 ETGAD-LTAVEIDPPLAQRLPQTIAEFMPNATNRFRVVNMDALKVTPSQLPQLADAATFT 166

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV ER++AQ  S  YG  SV   W
Sbjct: 167 LVANLPYNVATPILLTLLERFGNLDSFLVMV---QKEVAERLSAQPGSKVYGTPSVKLAW 223

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-------CCLESLKKITQEAFGKR 233
              A  + +I  +VF+P+P V S ++ F  H    P          + + ++   +F +R
Sbjct: 224 YGTAKSVGNIGRNVFWPAPNVDSALVRFERHAADDPRNPNNRSVGRDLVFRLIDASFAQR 283

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           RKTL  +L+++       +AGI+   R E L I++F  +     +
Sbjct: 284 RKTLHAALRKIVPSGAFERAGIDPTRRGETLDIDEFVALATACKE 328


>gi|83945291|ref|ZP_00957640.1| dimethyladenosine transferase [Oceanicaulis alexandrii HTCC2633]
 gi|83851461|gb|EAP89317.1| dimethyladenosine transferase [Oceanicaulis alexandrii HTCC2633]
          Length = 284

 Score =  272 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 116/288 (40%), Positives = 163/288 (56%), Gaps = 11/288 (3%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ ++   L+ +++ + +   K  GQ++LLDLN+  KIA   G +   TV E+G GPG 
Sbjct: 1   MSL-DQLPPLREVIAEHGLGADKRFGQHYLLDLNLTAKIARLCGDMSEATVFEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL+ GA +V VIEKD++F P L  IS   P R  II+ DALKVD        S I 
Sbjct: 60  LTRGLLSEGAARVTVIEKDRRFIPALAQISDAVPGRFSIIEADALKVDESTLPFEGSRI- 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + +NLPYN+GT LL  W+ AD  P +W  L L+FQKEV ER+ A+     YGRL++L   
Sbjct: 119 LASNLPYNVGTALLIKWLEAD--PIWWTRLVLMFQKEVAERVVARAGDKQYGRLAILAAA 176

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQ 239
             K+   F +    F P PKV S V+   P         L++L  +T+ AFG+RRKTLR+
Sbjct: 177 VAKSRYAFTVPARAFTPPPKVDSAVVVIEPLPEAQRFTDLKALSIVTESAFGQRRKTLRK 236

Query: 240 SL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           SL       R+  E LL +AGI+   RAE ++ E F  +       +D
Sbjct: 237 SLGPAASQTRVSPEALLEEAGIDPGARAETIAPEGFFTLARAWRAARD 284


>gi|183602652|ref|ZP_02964016.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219684013|ref|YP_002470396.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241191618|ref|YP_002969012.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241197023|ref|YP_002970578.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218070|gb|EDT88717.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621663|gb|ACL29820.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240250010|gb|ACS46950.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251577|gb|ACS48516.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794610|gb|ADG34145.1| dimethyladenosine transferase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 297

 Score =  272 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 17/285 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   ++KI   +G   G  V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVREAGVDAGDQVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISS--PIR 120
             GA  +  +E D      L    ++      NR  ++  DALKV   +   ++      
Sbjct: 74  ETGAD-LTAVEIDPPLAQRLPQTIAEFMPNATNRFRVVNMDALKVTPSQLPQLADAATFT 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV ER++AQ  S  YG  SV   W
Sbjct: 133 LVANLPYNVATPILLTLLERFGNLDSFLVMV---QKEVAERLSAQPGSKVYGTPSVKLAW 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-------CCLESLKKITQEAFGKR 233
              A  + +I  +VF+P+P V S ++ F  H    P          + + ++   +F +R
Sbjct: 190 YGTAKSVGNIGRNVFWPAPNVDSALVRFERHAADDPRNPNNRSVGRDLVFRLIDASFAQR 249

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           RKTL  +L+++       +AGI+   R E L I++F  +     +
Sbjct: 250 RKTLHAALRKIVPSGAFERAGIDPTRRGETLDIDEFVALATACKE 294


>gi|296455131|ref|YP_003662275.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184563|gb|ADH01445.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 322

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 133/294 (45%), Gaps = 23/294 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 28  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 87

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120
             GA  +  +E D      L     +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 88  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 203

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-------------ESLKKITQ 227
              A  +  I  +VF+P+P V S ++ F  +    P                E + ++  
Sbjct: 204 YGTAERVGTIGRNVFWPAPNVDSALVRFTRYQADDPAAPGASNSTADGGAQRELVFRLID 263

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 264 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 317


>gi|184154665|ref|YP_001843005.1| dimethyladenosine transferase [Lactobacillus fermentum IFO 3956]
 gi|227514301|ref|ZP_03944350.1| dimethyladenosine transferase [Lactobacillus fermentum ATCC 14931]
 gi|183226009|dbj|BAG26525.1| dimethyladenosine transferase [Lactobacillus fermentum IFO 3956]
 gi|227087349|gb|EEI22661.1| dimethyladenosine transferase [Lactobacillus fermentum ATCC 14931]
          Length = 295

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 147/292 (50%), Gaps = 22/292 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
                + I++ Y I  KK  GQNFL + ++L  I  ++G      VIEIG G G LT+ L
Sbjct: 7   SPSRTRAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKL 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIR 120
               A +V+ +E D+   P+L D+ + + N + ++  D LK +          + + P++
Sbjct: 67  A-QAAGEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVK 124

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I + +LF  +++      W ++ ++ QKEV +R+ A+  +  YG L++   +
Sbjct: 125 VVANLPYYITSPILFALLASQV---EWAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDY 181

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTL 237
           R    + F++S   F P+P V S ++        +P      + L  + +  F  RRK+L
Sbjct: 182 RMDVKVAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFGLIRGCFAHRRKSL 241

Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +LK + G++         +L +  I++  R E LS+ DF  + N + + +
Sbjct: 242 WNNLKTIVGKDEDRLGKVKEVLDRLEIDSQTRPERLSLVDFINLANAMHEKE 293


>gi|312133647|ref|YP_004000986.1| ksga [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772906|gb|ADQ02394.1| KsgA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 307

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 22/293 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120
             GA  +  +E D      L     +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228
              A  +  I  +VF+P+P V S ++ F  +    P               E + ++   
Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLVDA 249

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 250 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302


>gi|212715125|ref|ZP_03323253.1| hypothetical protein BIFCAT_00011 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661806|gb|EEB22381.1| hypothetical protein BIFCAT_00011 [Bifidobacterium catenulatum DSM
           16992]
          Length = 309

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 135/288 (46%), Gaps = 20/288 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 22  AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHVLEVGPGLGSLTLAIL 81

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D      L     +      +R  ++  DAL V  E    FN      
Sbjct: 82  ETGA-TMTAVEIDPPVAERLPGTIAEFMPDAVDRFRVVNRDALTVTPENLPDFNNDDSFT 140

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R++ +  S  YG  SV   W
Sbjct: 141 LVANLPYNVATPILLTLLERFDNLGTFLVMV---QKEVADRLSEKPGSKIYGTPSVKLAW 197

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--------NPI--PCCLESLKKITQEAF 230
              A  +  I  +VF+P+P V S ++ F  +         NP       E++ ++   AF
Sbjct: 198 YGTAERVGIIGRNVFWPAPNVDSALVLFKRYEGGHTSSANNPDGSVVDRETVFRLIDAAF 257

Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           G+RRKTL  +LK++       +AGI+   R E L+I++F  +   + +
Sbjct: 258 GQRRKTLHAALKKVVPSEAFERAGIDPTRRGETLTIDEFVALARAMGE 305


>gi|23465240|ref|NP_695843.1| dimethyladenosine transferase [Bifidobacterium longum NCC2705]
 gi|33516942|sp|Q8G6I3|RSMA_BIFLO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|23325870|gb|AAN24479.1| dimethyladenosine transferase ribosomal RNA adenine dimethylase
           [Bifidobacterium longum NCC2705]
          Length = 308

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 133/294 (45%), Gaps = 23/294 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120
             GA  +  +E D      L     +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-------------ESLKKITQ 227
              A  +  I  +VF+P+P V S ++ F  +    P                E + ++  
Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVRFTRYQADDPAAPGASNSTADGGTQRELVFRLID 249

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 250 AAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 303


>gi|227509274|ref|ZP_03939323.1| dimethyladenosine transferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227512287|ref|ZP_03942336.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577]
 gi|227084462|gb|EEI19774.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577]
 gi|227191272|gb|EEI71339.1| dimethyladenosine transferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 301

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 20/288 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
                + IL+ Y++  KK +GQNFL+DLNIL  I E++       VIEIG G G LT+ L
Sbjct: 14  SPARTQAILNRYRLSAKKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQL 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRI 121
               A +V+  E D++  P+L +  S + N +EII  D LK +  +     F    P+++
Sbjct: 74  AK-AANQVLAFEIDEKLLPVLDETLSPY-NNIEIINQDILKANLPEVVAKRFRTDKPLKV 131

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++ + ++    P  +ES+ ++ QKEV ER+ A+  +  YG LSV+   +
Sbjct: 132 VANLPYYITTPIVMDLLAN---PVKFESIVVMMQKEVAERLDAKPGTKPYGSLSVIVQQQ 188

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQ 239
               + F +    F P PKV S ++   P   ++  P   +      +  F  +RKTL  
Sbjct: 189 NDVDISFVVPKTAFIPQPKVDSAIVKLSPKMQVDKRPFDHKKFVGFVRGCFMHQRKTLWN 248

Query: 240 SLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +L  + G+          +L    I    R E L +E F  +TN   +
Sbjct: 249 NLLGVFGKQESVKGQIKKVLDDLSINAANRPEQLQVEQFVALTNAFHE 296


>gi|283457073|ref|YP_003361637.1| dimethyladenosine transferase [Bifidobacterium dentium Bd1]
 gi|283103707|gb|ADB10813.1| KsgA Dimethyladenosine transferase [Bifidobacterium dentium Bd1]
          Length = 308

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 130/286 (45%), Gaps = 20/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I     I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L
Sbjct: 17  AADIRRIADEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADDHVLEVGPGLGSLTLAIL 76

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D      L +  ++       R  +I  DAL V  E    F+      
Sbjct: 77  ETGA-SMTAVEIDPSLAERLPNTIAEFMPDAVERFRVINRDALTVSPENLPDFSGDDTFT 135

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 136 LVANLPYNVATPILLTLLERFDNLHSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 192

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL----------NPIPCCLESLKKITQEAF 230
              A     I  +VF+P+P V S ++ F  +           +      E++ ++   AF
Sbjct: 193 YGTAERAGIIGRNVFWPAPNVDSALVLFKRYEGGHTPAADSADGPAAKRETVFRLIDAAF 252

Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           G+RRKTL  +L+R   +     AGI+   R E L+I++F  +   L
Sbjct: 253 GQRRKTLHAALRRFVPDEAFDMAGIDPTRRGETLTIDEFVALARAL 298


>gi|294793453|ref|ZP_06758590.1| dimethyladenosine transferase [Veillonella sp. 3_1_44]
 gi|294455023|gb|EFG23395.1| dimethyladenosine transferase [Veillonella sp. 3_1_44]
          Length = 284

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ +I  ++    G  V+E+G G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGAD- 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   +L    + + N + II  D LK+D     N   P +++ANLPY I T 
Sbjct: 74  VTAIELDRRLLEVLDTTLASYDN-VRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + + +       E L ++ QKEV  R+ A+  +  YG LSV   + T+  ++ D+ P
Sbjct: 132 IIMSLLESKLP---IERLVVMVQKEVALRMIAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245
             F P+P VTS+VI  +    P       +   ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRDKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            E LL +A I+   R E  ++++F  + N   
Sbjct: 249 IEELLAKANIDGQRRGETFTLQEFADVANAWA 280


>gi|77919444|ref|YP_357259.1| dimethyladenosine transferase [Pelobacter carbinolicus DSM 2380]
 gi|118600881|sp|Q3A3G8|RSMA_PELCD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|77545527|gb|ABA89089.1| dimethyladenosine transferase [Pelobacter carbinolicus DSM 2380]
          Length = 264

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 93/269 (34%), Positives = 139/269 (51%), Gaps = 15/269 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              PKK  GQNFL D  ++  I  ++       V+EIG G G LT  LL   AR + VIE
Sbjct: 2   NHRPKKRFGQNFLQDRQVVDGIFAAADLQPEDRVLEIGPGLGALTDRLLPEVAR-LHVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   ++  ++L +   DALK+D+        P ++IANLPYNI ++++F  
Sbjct: 61  IDRDLGAGLQ---ARDEDKLVVHLGDALKLDWTALLT-DPPYKLIANLPYNISSQIVFKI 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +        +  L L+FQ+EVGER+ A   S +YG LSVL         +  + P  F+P
Sbjct: 117 LDHR---HLFSRLVLMFQQEVGERLCAGPGSKNYGILSVLCQVWFDIRRVLRVPPGAFYP 173

Query: 198 SPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRL-----GGENLL 250
            PKV S V+ F     P  +    +  +++ + AF +RRKTLR SL        G E  L
Sbjct: 174 PPKVHSAVLCFDALAQPRIVVEDQQFFRRVVKAAFAQRRKTLRNSLTGAGLGFDGLEVSL 233

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
             AGI+   RAE LS+E+F ++  ++  +
Sbjct: 234 LDAGIDPGRRAETLSLEEFGKLAQLIQPH 262


>gi|257794266|ref|ZP_05643245.1| dimethyladenosine transferase [Staphylococcus aureus A9781]
 gi|258407216|ref|ZP_05680361.1| dimethyladenosine transferase [Staphylococcus aureus A9763]
 gi|258420817|ref|ZP_05683753.1| dimethyladenosine transferase [Staphylococcus aureus A9719]
 gi|258424472|ref|ZP_05687351.1| dimethyladenosine transferase [Staphylococcus aureus A9635]
 gi|257788238|gb|EEV26578.1| dimethyladenosine transferase [Staphylococcus aureus A9781]
 gi|257841174|gb|EEV65623.1| dimethyladenosine transferase [Staphylococcus aureus A9763]
 gi|257843209|gb|EEV67622.1| dimethyladenosine transferase [Staphylococcus aureus A9719]
 gi|257845341|gb|EEV69376.1| dimethyladenosine transferase [Staphylococcus aureus A9635]
          Length = 299

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 94/294 (31%), Positives = 146/294 (49%), Gaps = 25/294 (8%)

Query: 1   MTMNNK-----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55
           M M +          + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG
Sbjct: 1   MKMLDNKDIATPSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIG 60

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EK 111
            G G+LT+ L    A++V+  E DQ+  P+L D  S + N + +I +D LK +     E 
Sbjct: 61  PGMGSLTEQLA-RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVEN 118

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
                  I ++ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  Y
Sbjct: 119 HLQDCEKIMVVANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAY 175

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEA 229
           G LS++  + T+ + +  +   VF P P V S V+  +    P+      E+  K+ + A
Sbjct: 176 GSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAA 235

Query: 230 FGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
           F +RRKT+  + +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 236 FAQRRKTINNNYQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 289


>gi|93006282|ref|YP_580719.1| dimethyladenosine transferase [Psychrobacter cryohalolentis K5]
 gi|119365050|sp|Q1QAR8|RSMA_PSYCK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|92393960|gb|ABE75235.1| dimethyladenosine transferase [Psychrobacter cryohalolentis K5]
          Length = 287

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 93/277 (33%), Positives = 139/277 (50%), Gaps = 13/277 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           + S+   L   K  P+K  GQNFL D +++++I ES        +IEIG G G LT+ LL
Sbjct: 8   AQSITNSLRAAKHQPRKRFGQNFLHDRSVIREIVESIRLERDDNLIEIGPGMGALTEPLL 67

Query: 67  TLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIAN 124
                 + V+E D+     L+  I +      EII+++A+ VD+ + + +    +R++ N
Sbjct: 68  AE-VDAMTVVELDRDLADSLRIRIGANSHPNFEIIKNNAMHVDYRELYSDERGKLRVVGN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI T +LF+ +S        E +  + QKEV ERITA   S  YGRLSV+  +    
Sbjct: 127 LPYNISTPILFHLLSYAD---VIEDMHFMLQKEVVERITADVGSKTYGRLSVIMQYHCHT 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKK-ITQEAFGKRRKTLRQSLK 242
             +  +    F P PKVTS V    PH + P+    E     + +E F  RRKTLR   K
Sbjct: 184 DYLLTVPRGAFNPPPKVTSAVFRLTPHIIKPVVAEDEEYFALVVRETFNHRRKTLRAIFK 243

Query: 243 RL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274
           +        E+      I+   R E LS++DF  ++N
Sbjct: 244 KSTLLPTLSEDDFAACAIDPQARPETLSVKDFVNLSN 280


>gi|302877393|ref|YP_003845957.1| dimethyladenosine transferase [Gallionella capsiferriformans ES-2]
 gi|302580182|gb|ADL54193.1| dimethyladenosine transferase [Gallionella capsiferriformans ES-2]
          Length = 262

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 94/263 (35%), Positives = 135/263 (51%), Gaps = 9/263 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              KK  GQNFL+D NI+  I  +        ++EIG G G LT+ LL   A  + V+E 
Sbjct: 4   HKAKKKFGQNFLVDQNIIADIISAIRPEADDNLVEIGPGLGALTRPLLKSLAH-LHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L+    Q   ++ I   DALK D     ++ +P+RI+ NLPYNI + LLF + 
Sbjct: 63  DRDIIARLEADYPQPHTKMTIHAGDALKFD---LASLGAPLRIVGNLPYNISSPLLFYF- 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +      +  + Q EV ER+ A  ++P YGRLSV+  +R     + D+ P  F P+
Sbjct: 119 --AEYADRITDMHFMLQNEVVERMVADHSTPAYGRLSVMLQYRFFMEKLLDVPPDSFRPA 176

Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S ++  IP      +    +   +I   AFG+RRKTLR +LK    E      GI 
Sbjct: 177 PKVNSAIVRMIPIPADQIVVKNEKLFGEIVGTAFGQRRKTLRNTLKSFLNEAEFENLGIN 236

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
             LRAENLS+++F RI   + D 
Sbjct: 237 PQLRAENLSVDEFARIAAYVDDR 259


>gi|320532470|ref|ZP_08033295.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135315|gb|EFW27438.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 364

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     I P K +GQNF+ D   +++I +S+G     TV+EIG G G+LT  LL
Sbjct: 67  PTEVRGLSQALGIRPTKTLGQNFVHDAGTVRRIVKSAGVRPDDTVLEIGPGLGSLTLALL 126

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIR 120
             GAR VI +E D      L     D   Q   RL +I+ DAL +   +  + +   P R
Sbjct: 127 EAGAR-VIAVEIDPALARALPVTVADRMPQAAGRLSLIEADALSITGPQSLDETGNPPTR 185

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+   +L   + A    P  ES+T++ Q EV +R+ A+  S  YG  S+   W
Sbjct: 186 LVANLPYNVAVPVLLTALEA---LPSLESVTVMVQSEVADRLAAEPGSRTYGVPSLKAAW 242

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239
              A     IS HVF+P P V S ++  +    P      E +  +   AF +RRKTLR+
Sbjct: 243 YAAARRTLTISRHVFWPVPNVDSALVELVRRRPPATRATREQVFAVVDAAFAQRRKTLRK 302

Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +L +L G     E+ L  AGI+   R E L I  F  +  +L 
Sbjct: 303 ALAKLAGGADAAESALRAAGIDPARRGETLDITAFAALAEVLQ 345


>gi|299782801|gb|ADJ40799.1| Dimethyladenosine transferase [Lactobacillus fermentum CECT 5716]
          Length = 295

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 147/292 (50%), Gaps = 22/292 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
                + I++ Y I  KK  GQNFL + ++L  I  ++G      VIEIG G G LT+ L
Sbjct: 7   SPSRTRAIMNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKL 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NISSPIR 120
               A +V+ +E D+   P+L D+ + + N + ++  D LK +          + + P++
Sbjct: 67  A-QAAGEVVALEIDESLLPVLDDVLAPYGN-VTVLNQDVLKANLADLVQTAFKDPTKPVK 124

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I + +LF  +++      W ++ ++ QKEV +R+ A+  +  YG L++   +
Sbjct: 125 VVANLPYYITSPILFALLASQV---EWAAVCVMMQKEVADRLVAKPGTKDYGALTLAIDY 181

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC---CLESLKKITQEAFGKRRKTL 237
           R    + F++S   F P+P V S ++        +P      + L  + +  F  RRK+L
Sbjct: 182 RMDVKVAFNVSRKSFVPAPNVDSAIVVLTQKSAALPVSPFNEDRLFCLIRGCFAHRRKSL 241

Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +LK + G++         +L +  I++  R E LS+ DF  + N + + +
Sbjct: 242 WNNLKTIVGKDEDRLGKVKEVLDRLEIDSQTRPERLSLVDFINLANAMHEKE 293


>gi|307824413|ref|ZP_07654638.1| dimethyladenosine transferase [Methylobacter tundripaludum SV96]
 gi|307734397|gb|EFO05249.1| dimethyladenosine transferase [Methylobacter tundripaludum SV96]
          Length = 282

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 100/285 (35%), Positives = 148/285 (51%), Gaps = 30/285 (10%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P+K  GQNFL D NI+  I  S  +  G   +EIG G G LT+ LL  G R + V+E 
Sbjct: 3   HTPRKRFGQNFLHDHNIIYNIISSIQARPGQHWVEIGPGQGALTEPLLNEGVR-LDVVEL 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------------------- 116
           D+    +L++   Q+PN L+I   DAL+ DF                             
Sbjct: 62  DRDLVVLLREKFKQYPN-LQIHSADALRFDFSSLAAGGXXXXXXXXARKAPEGARAGIAR 120

Query: 117 -SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
              +R+I NLPYNI T L+F+ +         E +  + QKEV +RI A   S  YGRLS
Sbjct: 121 DEKLRVIGNLPYNISTPLMFHLLDNAYC---IEDMHFMLQKEVVDRICAAPGSKKYGRLS 177

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKR 233
           V+  +     ++FD+ P  F P+P+V S ++  +PH  P      +  L ++  +AF +R
Sbjct: 178 VMMQYYCATELLFDVPPESFDPAPQVMSAIVRLVPHQQPPVAVNDMSKLNRVVTQAFSQR 237

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           RKTLR SLK+L  E  +   GI+  LRAE++S+ +F R++N+L +
Sbjct: 238 RKTLRNSLKKLITEEEIVALGIDPTLRAESISLAEFARLSNLLQE 282


>gi|88810560|ref|ZP_01125817.1| dimethyladenosine transferase [Nitrococcus mobilis Nb-231]
 gi|88792190|gb|EAR23300.1| dimethyladenosine transferase [Nitrococcus mobilis Nb-231]
          Length = 271

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 97/267 (36%), Positives = 138/267 (51%), Gaps = 8/267 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +   ++  GQNFL D +IL ++ +S     G   IEIG+G G LT+ LL   AR ++ IE
Sbjct: 3   QHRARRRFGQNFLHDPSILHRMVDSIDPRPGQCCIEIGSGLGALTRPLLER-ARALVAIE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+         LEIIQ DAL +DF  F      +R+I NLPYNI T LLF+ 
Sbjct: 62  LDRDLIEPLRRCCDG-AGELEIIQADALGLDFACFRQGPEKLRVIGNLPYNIATPLLFHV 120

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                     E    L QKEV ER+ A      YGRLSV+  +R +   +FD+ P+ F P
Sbjct: 121 TGFAEH---LEDAHFLLQKEVVERMAAGAGQASYGRLSVMIQYRCRVEPLFDVLPNAFRP 177

Query: 198 SPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            PKVTS+ +   P   P          L ++   AFG+RRKTLR +L+ +  E  +  AG
Sbjct: 178 VPKVTSSWVRLTPLSRPPRGTWDDEPRLAEVVARAFGQRRKTLRNALRGMISEQQIKAAG 237

Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281
           IE + RAE + ++ + R+  ++     
Sbjct: 238 IEPSARAETIDLDHYLRLAEVMAKRSP 264


>gi|313200361|ref|YP_004039019.1| dimethyladenosine transferase [Methylovorus sp. MP688]
 gi|312439677|gb|ADQ83783.1| dimethyladenosine transferase [Methylovorus sp. MP688]
          Length = 254

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 91/261 (34%), Positives = 133/261 (50%), Gaps = 11/261 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K + KK  GQNFL D  I+  +  +        ++EIG G G LTQ LL      + V+E
Sbjct: 2   KHVAKKRFGQNFLTDQAIITSLVNAIAPQPNDLMVEIGPGLGALTQPLLQRLEN-LHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     ++   +  P ++ I   DALK D   F +I+  +R++ NLPYNI T +LF+ 
Sbjct: 61  IDRDIIAWMEKHYA--PGKVTIHNIDALKFD---FASIAPRLRVVGNLPYNISTPILFHL 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +           +  + QKEV ER+ A+ +S  YGRLSV+  +      +F + P  F P
Sbjct: 116 LDNVAH---IIDMHFMLQKEVVERMVAEPSSAAYGRLSVMLQYHLHMEYLFTVPPEAFDP 172

Query: 198 SPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S  +  +PH   P P        ++   AFG+RRKTLR +LK L  +      GI
Sbjct: 173 APKVESAFVRCVPHTELPFPAKDYALFSRVVATAFGQRRKTLRNTLKGLLDDAGFEALGI 232

Query: 256 ETNLRAENLSIEDFCRITNIL 276
           ++  RAENL +  F  I N L
Sbjct: 233 DSQWRAENLPLSSFVSIANYL 253


>gi|224283936|ref|ZP_03647258.1| dimethyladenosine transferase [Bifidobacterium bifidum NCIMB 41171]
 gi|310288290|ref|YP_003939549.1| Dimethyladenosine transferase [Bifidobacterium bifidum S17]
 gi|309252227|gb|ADO53975.1| Dimethyladenosine transferase [Bifidobacterium bifidum S17]
          Length = 316

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 135/282 (47%), Gaps = 14/282 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ I +   I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L  
Sbjct: 31  DIRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILET 90

Query: 69  GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKF--FNISSPIRII 122
           GA  +  +E D      L      +     NRL +I  DAL +       F+   P  ++
Sbjct: 91  GA-TMTAVEIDPPVAQRLPHTIDTYMPDARNRLTVINKDALALTSADLPEFSGDEPFTLV 149

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+ T ++   +          S  ++ QKEV +R+TA   S  YG  SV   W  
Sbjct: 150 ANLPYNVATPIILTLLER---FDMLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWYG 206

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESL-KKITQEAFGKRRKTLR 238
            A  + +I  HVF+P+P V S +  F     H  P    L  L  ++   AF +RRKTL 
Sbjct: 207 SAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTLH 266

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +LKR+  + + H AGI+   R E L+I++F  +   L  +Q
Sbjct: 267 AALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 308


>gi|282848961|ref|ZP_06258350.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745]
 gi|282581236|gb|EFB86630.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745]
          Length = 284

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I   + I   K +GQNFL+   I+ +I  ++    G  V+E+G G G LTQ L   GA  
Sbjct: 15  ICKRFDIKMSKKLGQNFLIKRGIVDEIVHAAELTAGEPVLEVGPGIGTLTQGLAQSGAD- 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   +L    + + N + II  D LK+D     N   P +++ANLPY I T 
Sbjct: 74  VTAIELDRRLLEVLDTTLASYDN-VRIIHGDVLKLDVPTIMN-HKPFKVVANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++ + + +       E L ++ QKEV  R+ A+  +  YG LSV   + T+  ++ D+ P
Sbjct: 132 IIMSLLESKLP---IERLVVMVQKEVALRMIAKPGTKDYGALSVAVQYYTEPDIVLDVPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG----- 245
             F P+P VTS+VI  +    P       +   ++ +  F +RRKT   ++K  G     
Sbjct: 189 KSFLPAPAVTSSVIRCVLRNKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMKTTGLTRDR 248

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            E LL +A I+   R E  ++++F  + N   
Sbjct: 249 IEELLAKANIDGLRRGETFTLQEFADVANAWA 280


>gi|227547072|ref|ZP_03977121.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212489|gb|EEI80378.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 321

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 22/293 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 28  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 87

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120
             GA  +  +E D      L     +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 88  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 203

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228
              A  +  I  +VF+P+P V S ++ F  +    P               E + ++   
Sbjct: 204 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLIDA 263

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 264 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 316


>gi|313141088|ref|ZP_07803281.1| dimethyladenosine transferase dimethyltransferase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313133598|gb|EFR51215.1| dimethyladenosine transferase dimethyltransferase [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 313

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 135/282 (47%), Gaps = 14/282 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ I +   I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L  
Sbjct: 28  DIRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILET 87

Query: 69  GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKF--FNISSPIRII 122
           GA  +  +E D      L      +     NRL +I  DAL +       F+   P  ++
Sbjct: 88  GA-TMTAVEIDPPVAQRLPHTIDTYMPDARNRLTVINKDALALTSADLPEFSGDEPFTLV 146

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+ T ++   +          S  ++ QKEV +R+TA   S  YG  SV   W  
Sbjct: 147 ANLPYNVATPIILTLLER---FDMLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWYG 203

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESL-KKITQEAFGKRRKTLR 238
            A  + +I  HVF+P+P V S +  F     H  P    L  L  ++   AF +RRKTL 
Sbjct: 204 SAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTLH 263

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +LKR+  + + H AGI+   R E L+I++F  +   L  +Q
Sbjct: 264 AALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 305


>gi|154707299|ref|YP_001425385.1| dimethyladenosine transferase [Coxiella burnetii Dugway 5J108-111]
 gi|226729774|sp|A9KGZ8|RSMA_COXBN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|154356585|gb|ABS78047.1| dimethyladenosine transferase [Coxiella burnetii Dugway 5J108-111]
          Length = 258

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/261 (37%), Positives = 141/261 (54%), Gaps = 8/261 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  +K  GQ+FL D  +L+KI  +       T++EIG G G LT  LLT     + ++E
Sbjct: 3   KMPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L+   +Q  N + I Q+DAL+ DF        P+R++ NLPYNI T LLF+ 
Sbjct: 62  IDGDLVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHL 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
            S        E +  + QKEV  RITA+  S  YGRLSV+  +    T +F +SP  F P
Sbjct: 120 FSQIHC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTP 176

Query: 198 SPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P+V S +I  IP  N  P+   L+ L  + +EAF  RRKT+  +LK+L   +      I
Sbjct: 177 PPRVESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEI 236

Query: 256 ETNLRAENLSIEDFCRITNIL 276
              LR + L++EDF +I+NIL
Sbjct: 237 NPQLRPQELTVEDFVKISNIL 257


>gi|119026633|ref|YP_910478.1| dimethyladenosine transferase [Bifidobacterium adolescentis ATCC
           15703]
 gi|166221647|sp|A1A3W3|RSMA_BIFAA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118766217|dbj|BAF40396.1| dimethyladenosine transferase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 303

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 139/303 (45%), Gaps = 29/303 (9%)

Query: 1   MTMNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV 51
           MT N   H+         ++ I +   I P K  GQNF++D   +++I   +G      V
Sbjct: 1   MTENVNEHTQGHLLGAADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHV 60

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKV 107
           +E+G G G+LT  +L  GA  +  +E D      L    ++      +R  ++  DAL V
Sbjct: 61  LEVGPGLGSLTLAILETGA-TMTAVEIDPPVAERLPKTIAEFMPDAVDRFRVVNRDALTV 119

Query: 108 DFEKF--FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
           + E    F       ++ANLPYN+ T +L   +        +  +    QKEV +R++ +
Sbjct: 120 NPENLPDFKDDDSFTLVANLPYNVATPILLTLLERFDNLGTFLVMV---QKEVADRLSEK 176

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH----------LNPI 215
             S  YG  SV   W   A  +  I  +VF+P+P V S ++ F  +           +  
Sbjct: 177 PGSKIYGTPSVKLAWYGTAERVGVIGRNVFWPAPNVDSALVLFKRYPGGHTPAADNADGS 236

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
               E++ ++   AFG+RRKTL  +LK++       +AGI+   R E L+I++F  +   
Sbjct: 237 VVDRETVFRLIDAAFGQRRKTLHAALKKIVPSEAFEKAGIDPTRRGETLTIDEFVALARA 296

Query: 276 LTD 278
           L +
Sbjct: 297 LDE 299


>gi|329118095|ref|ZP_08246807.1| dimethyladenosine transferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465755|gb|EGF12028.1| dimethyladenosine transferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 269

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 134/268 (50%), Gaps = 13/268 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           +  +  +    +K  GQNFL D  I+  I  +       TVIEIG G   +T  L     
Sbjct: 8   RATMKEH--QARKRFGQNFLQDTRIIADIVNAVRPQPDDTVIEIGPGLAAITAPLAA-KL 64

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            ++ V+E D+     LK++     ++L I + D L+ D   F +I+   +I+ NLPYNI 
Sbjct: 65  NRLHVVEIDRDIVARLKNL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNIS 119

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T LLF              +  + QKEV ER+TA   S  YGRLSV+  +  +   + ++
Sbjct: 120 TPLLFRL---SEIADDVADMHFMLQKEVVERMTAAPGSNDYGRLSVMLQYFFEMEPLINV 176

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            P  F P+PKV S V+  IP  + I      ++  ++ + AF +RRKT+R +LK L  + 
Sbjct: 177 PPEAFSPAPKVDSAVVRMIPLKHRIGRADDFDAFARLVKAAFHQRRKTIRNNLKELAADG 236

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
            L  AGI    R E+++ E +  ++N L
Sbjct: 237 DLQAAGINPQDRPEHIAPEKYVGLSNYL 264


>gi|282907815|ref|ZP_06315653.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910131|ref|ZP_06317937.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282325979|gb|EFB56285.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328291|gb|EFB58566.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
          Length = 299

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/294 (31%), Positives = 146/294 (49%), Gaps = 25/294 (8%)

Query: 1   MTMNNK-----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55
           M M +          + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG
Sbjct: 1   MKMLDNKDIATPSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIG 60

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EK 111
            G G+LT+ L    A++V+  E DQ+  P+L D  S + N + +I +D LK +     E 
Sbjct: 61  PGMGSLTEQLA-RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVEN 118

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
                  I ++ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  Y
Sbjct: 119 HLQDCEKIMVVANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEIGSKAY 175

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEA 229
           G LS++  + T+ + +  +   VF P P V S V+  +    P+      E+  K+ + A
Sbjct: 176 GSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAA 235

Query: 230 FGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
           F +RRKT+  + +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 236 FAQRRKTINNNYQNYFKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKLYE 289


>gi|213693330|ref|YP_002323916.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|239622870|ref|ZP_04665901.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|317482342|ref|ZP_07941362.1| dimethyladenosine transferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690152|ref|YP_004209886.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis 157F]
 gi|254807861|sp|B7GPE3|RSMA_BIFLI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|213524791|gb|ACJ53538.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|239514867|gb|EEQ54734.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|316916222|gb|EFV37624.1| dimethyladenosine transferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320459512|dbj|BAJ70133.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320461488|dbj|BAJ72108.1| dimethyladenosine transferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 307

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 22/293 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120
             GA  +  +E D      L     +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228
              A  +  I  +VF+P+P V S ++ F  +    P               E + ++   
Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLIDA 249

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 250 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302


>gi|253581082|ref|ZP_04858342.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847618|gb|EES75588.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 290

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 19/289 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + +  +++  +L  Y    +K  GQNFL+D ++L KI +S+       V+EIG G G +T
Sbjct: 6   LGDPKYTI-EVLQKYNFAFQKRFGQNFLIDTHVLDKIIDSAQITKDDFVLEIGPGIGTMT 64

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSPI 119
           Q L         V   D+   PIL D      N + +I +D LKVD  +     N   PI
Sbjct: 65  QYLAEAAREVAAVE-IDKTLLPILDDTLKDWDN-VTVINNDILKVDIRQLALEKNQGRPI 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++             +S+T++ QKEV +R+     +  YG LS+   
Sbjct: 123 KVVANLPYYITTPIIMGLFENQVP---VDSITIMVQKEVADRMQVGPGTKDYGALSLAVQ 179

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTL 237
           +  K  ++ ++ P+ F P PKV S VI    +  P       + + +I + +F +RRKTL
Sbjct: 180 YYAKPKIVANVPPNCFMPRPKVGSAVIRLERYEKPPVEVKNEKLMFRIIRASFNQRRKTL 239

Query: 238 RQSLKRL----GGENLLHQA----GIETNLRAENLSIEDFCRITNILTD 278
              LK        +  + QA    G+  ++R E L++  F ++ N  T+
Sbjct: 240 VNGLKNSQEIPFSKEQIEQALGMCGLSLSVRGEALTLAQFAQLANAFTE 288


>gi|311065151|ref|YP_003971877.1| dimethyladenosine transferase [Bifidobacterium bifidum PRL2010]
 gi|310867471|gb|ADP36840.1| Dimethyladenosine transferase [Bifidobacterium bifidum PRL2010]
          Length = 313

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 135/282 (47%), Gaps = 14/282 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ I +   I P K  GQNF++D   +++I   +       V+E+G G G+LT  +L  
Sbjct: 28  DIRHIAAEAGISPTKKFGQNFVIDPGTVRRIVREAAVTADTRVLEVGPGLGSLTLAILET 87

Query: 69  GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKF--FNISSPIRII 122
           GA  +  +E D      L      +     NRL +I  DAL +       F+   P  ++
Sbjct: 88  GA-TMTAVEIDPPVAQRLPHTIDTYMPDARNRLTVINKDALALTSADLPEFSDDEPFTLV 146

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+ T ++   +          S  ++ QKEV +R+TA   S  YG  SV   W  
Sbjct: 147 ANLPYNVATPIILTLLER---FDMLTSFVVMVQKEVADRLTATPGSKIYGAPSVKLAWYG 203

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESL-KKITQEAFGKRRKTLR 238
            A  + +I  HVF+P+P V S +  F     H  P    L  L  ++   AF +RRKTL 
Sbjct: 204 SAERVGNIGRHVFWPAPNVDSALAGFTRVQSHAGPRDPQLRQLTFQLVDAAFSQRRKTLH 263

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +LKR+  + + H AGI+   R E L+I++F  +   L  +Q
Sbjct: 264 AALKRMVPDEVFHTAGIDPTRRGETLTIDEFAALATALRQSQ 305


>gi|253998288|ref|YP_003050351.1| dimethyladenosine transferase [Methylovorus sp. SIP3-4]
 gi|253984967|gb|ACT49824.1| dimethyladenosine transferase [Methylovorus sp. SIP3-4]
          Length = 254

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/261 (35%), Positives = 134/261 (51%), Gaps = 11/261 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K + KK  GQNFL D  I+  +  +        ++EIG G G LTQ LL      + V+E
Sbjct: 2   KHVAKKRFGQNFLTDQAIITSLVNAIAPQPNDLMVEIGPGLGALTQPLLQRLEN-LHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     ++   +  P ++ I   DALK D   F +I+S +R++ NLPYNI T +LF+ 
Sbjct: 61  IDRDIIAWMEKHYA--PGKVTIHNIDALKFD---FASIASRLRVVGNLPYNISTPILFHL 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +           +  + QKEV ER+ A+ +S  YGRLSV+  +      +F + P  F P
Sbjct: 116 LDNVDH---IIDMHFMLQKEVVERMVAEPSSAAYGRLSVMLQYHLHMEYLFTVPPEAFDP 172

Query: 198 SPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S  +  +PH   P P        ++   AFG+RRKTLR +LK L  +      GI
Sbjct: 173 APKVESAFVRCVPHTELPFPAKDYALFSRVVATAFGQRRKTLRNTLKGLLDDAGFEALGI 232

Query: 256 ETNLRAENLSIEDFCRITNIL 276
           ++  RAENL +  F  I N L
Sbjct: 233 DSQWRAENLPLSAFVSIANYL 253


>gi|227522373|ref|ZP_03952422.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290]
 gi|227090431|gb|EEI25743.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290]
          Length = 301

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 20/288 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
                + IL+ Y++  KK +GQNFL+DLNIL  I E++       VIEIG G G LT+ L
Sbjct: 14  SPARTQAILNRYRLSAKKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQL 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRI 121
               A +V+  E D++  P+L +  S + N +EII  D LK +  +     F    P+++
Sbjct: 74  AK-AANQVLAFEIDEKLLPVLDETLSPY-NNIEIINQDILKANLPEVVAKRFRTDKPLKV 131

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++ + ++    P  +ES+ ++ QKEV ER+ A+  +  YG LSV+   +
Sbjct: 132 VANLPYYITTPIVMDLLAN---PVKFESIVVMMQKEVAERLDAKPGTKPYGSLSVIVQQQ 188

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQ 239
               + F +    F P PKV S ++   P   ++  P   +      +  F  +RKTL  
Sbjct: 189 NDVDISFVVPKTAFIPQPKVDSAIVKLSPKMQVDKRPFDHKKFVGFVRGCFMHQRKTLWN 248

Query: 240 SLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +L  + G+          +L    I    R E L +E F  +TN   +
Sbjct: 249 NLLGVFGKQESVKGQIKKVLDDLSINAANRPEQLLVEQFVALTNAFHE 296


>gi|225352355|ref|ZP_03743378.1| hypothetical protein BIFPSEUDO_03972 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156862|gb|EEG70231.1| hypothetical protein BIFPSEUDO_03972 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 309

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 20/288 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 22  AADIRRIAAEAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHVLEVGPGLGSLTLAIL 81

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GA  +  +E D      L     +      +R  ++  DAL V  E    F       
Sbjct: 82  ETGA-TMTAVEIDPPVAERLPGTIAEFMPDAVDRFRVVNRDALTVTPENLPDFQNDDSFT 140

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R++ +  S  YG  SV   W
Sbjct: 141 LVANLPYNVATPILLTLLERFDNLGTFLVMV---QKEVADRLSEKPGSKIYGTPSVKLAW 197

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--------NPI--PCCLESLKKITQEAF 230
              A  +  I  +VF+P+P V S ++ F  +         NP       E++ ++   AF
Sbjct: 198 YGTAERVGIIGRNVFWPAPNVDSALVLFKRYEGGHTPSANNPDGSVVDRENVFRLIDAAF 257

Query: 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           G+RRKTL  +LK++       QAGI+   R E L+I++F  +   + +
Sbjct: 258 GQRRKTLHAALKKIVPSEAFEQAGIDPTRRGETLAIDEFVALARAVGE 305


>gi|154486326|ref|ZP_02027733.1| hypothetical protein BIFADO_00135 [Bifidobacterium adolescentis
           L2-32]
 gi|154084189|gb|EDN83234.1| hypothetical protein BIFADO_00135 [Bifidobacterium adolescentis
           L2-32]
          Length = 308

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 138/303 (45%), Gaps = 29/303 (9%)

Query: 1   MTMNNKSHS---------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV 51
           MT N   H+         ++ I +   I P K  GQNF++D   +++I   +G      V
Sbjct: 6   MTENVNEHTQGHLLGAADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHV 65

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKV 107
           +E+G G G+LT  +L  GA  +  +E D      L    ++      +R  ++  DAL V
Sbjct: 66  LEVGPGLGSLTLAILETGA-TMTAVEIDPPVAERLPKTIAEFMPDAVDRFRVVNRDALTV 124

Query: 108 DFEKF--FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
           + E    F       ++ANLPYN+ T +L   +        +  +    QKEV +R++ +
Sbjct: 125 NPENLPDFKDDDSFTLVANLPYNVATPILLTLLERFDNLGTFLVMV---QKEVADRLSEK 181

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH----------LNPI 215
             S  YG  SV   W      +  I  +VF+P+P V S ++ F  +           +  
Sbjct: 182 PGSKIYGTPSVKLAWYGTTERVGVIGRNVFWPAPNVDSALVLFKRYPGGHTPAADNADGS 241

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
               E++ ++   AFG+RRKTL  +LK++       +AGI+   R E L+I++F  +   
Sbjct: 242 VVDRETVFRLIDAAFGQRRKTLHAALKKIVPSEAFEKAGIDPTRRGETLTIDEFVALARA 301

Query: 276 LTD 278
           L +
Sbjct: 302 LDE 304


>gi|322692102|ref|YP_004221672.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320456958|dbj|BAJ67580.1| dimethyladenosine transferase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 307

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 132/290 (45%), Gaps = 22/290 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120
             GA  +  +E D      L     +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228
              A  +  I  +VF+P+P V S ++ F  +    P               E + ++   
Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLIDA 249

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +  
Sbjct: 250 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIES 299


>gi|302388630|ref|YP_003824451.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM
           16646]
 gi|302199258|gb|ADL06828.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM
           16646]
          Length = 282

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 15/278 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + I+  + I P K +GQ+FL+D   L K+ E++   +   V+EIG G G LT  L    A
Sbjct: 4   RAIMREFGIRPSKRLGQHFLIDEAPLYKMLEAARLNESDEVLEIGPGLGVLTLELCRR-A 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYN 128
           +KV+ +EKD    P+L+ ++  + N + ++++D LK+D EK +        +++ANLPY 
Sbjct: 63  KKVVAVEKDPNLIPVLEKLTKSY-NNICLLREDVLKLDMEKLWREYFDGKFKVVANLPYY 121

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + ++   I+        E   ++ QKEV  R+ A   +  YG LSV         ++ 
Sbjct: 122 ITSPVIMKIINNR---HLIEMAVIMIQKEVAHRLVAAPGNKDYGILSVAVQLYADVDLVC 178

Query: 189 DISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            +    F P PKV S V+  +                K+ + AFG+RRKT++ SL+    
Sbjct: 179 HVGRSAFLPPPKVDSAVVRLVLKEGSAVPLEDERLFFKVVEAAFGERRKTVKNSLRSRLS 238

Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 E  L +AGI+ + RAE L+IE+F  +   + D
Sbjct: 239 LFAGDVEEALERAGIDGSRRAETLTIEEFAALAREIKD 276


>gi|15926170|ref|NP_373703.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282177|ref|NP_645265.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485357|ref|YP_042578.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57634617|ref|NP_371017.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|57651375|ref|YP_185424.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160474|ref|YP_493179.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194251|ref|YP_499043.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148266951|ref|YP_001245894.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392997|ref|YP_001315672.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978821|ref|YP_001441080.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161508739|ref|YP_001574398.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142315|ref|ZP_03566808.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253316230|ref|ZP_04839443.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255005286|ref|ZP_05143887.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|258429609|ref|ZP_05688283.1| ksgA protein [Staphylococcus aureus A9299]
 gi|258446120|ref|ZP_05694281.1| dimethyladenosine transferase [Staphylococcus aureus A6300]
 gi|258448028|ref|ZP_05696158.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus A6224]
 gi|258453825|ref|ZP_05701798.1| dimethyladenosine transferase [Staphylococcus aureus A5937]
 gi|262049978|ref|ZP_06022837.1| dimethyladenosine transferase [Staphylococcus aureus D30]
 gi|262052522|ref|ZP_06024719.1| dimethyladenosine transferase [Staphylococcus aureus 930918-3]
 gi|269202113|ref|YP_003281382.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895100|ref|ZP_06303320.1| dimethyladenosine transferase [Staphylococcus aureus A8117]
 gi|282915811|ref|ZP_06323579.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           D139]
 gi|282925567|ref|ZP_06333220.1| dimethyladenosine transferase [Staphylococcus aureus A9765]
 gi|283768928|ref|ZP_06341837.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           H19]
 gi|284023502|ref|ZP_06377900.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           132]
 gi|294850352|ref|ZP_06791085.1| dimethyladenosine transferase [Staphylococcus aureus A9754]
 gi|295407382|ref|ZP_06817179.1| dimethyladenosine transferase [Staphylococcus aureus A8819]
 gi|296276552|ref|ZP_06859059.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297246462|ref|ZP_06930302.1| dimethyladenosine transferase [Staphylococcus aureus A8796]
 gi|47606760|sp|Q932G1|RSMA_STAAM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|54037709|sp|P66663|RSMA_STAAW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|54041550|sp|P66662|RSMA_STAAN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900458|sp|Q5HII3|RSMA_STAAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900527|sp|Q6GBZ5|RSMA_STAAS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365846|sp|Q2FJE9|RSMA_STAA3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365847|sp|Q2G0T0|RSMA_STAA8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221707|sp|A7WYP0|RSMA_STAA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028820|sp|A6TYW7|RSMA_STAA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028821|sp|A5IQ45|RSMA_STAA9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028822|sp|A8Z0Y8|RSMA_STAAT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|13700383|dbj|BAB41681.1| ksgA [Staphylococcus aureus subsp. aureus N315]
 gi|21203613|dbj|BAB94313.1| ksgA [Staphylococcus aureus subsp. aureus MW2]
 gi|46395517|dbj|BAB56655.2| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|49243800|emb|CAG42225.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285561|gb|AAW37655.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126448|gb|ABD20962.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201809|gb|ABD29619.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740020|gb|ABQ48318.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945449|gb|ABR51385.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720956|dbj|BAF77373.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160367548|gb|ABX28519.1| possible dimethyladenosine transferase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257849668|gb|EEV73635.1| ksgA protein [Staphylococcus aureus A9299]
 gi|257855097|gb|EEV78039.1| dimethyladenosine transferase [Staphylococcus aureus A6300]
 gi|257858718|gb|EEV81591.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus A6224]
 gi|257863996|gb|EEV86751.1| dimethyladenosine transferase [Staphylococcus aureus A5937]
 gi|259159569|gb|EEW44616.1| dimethyladenosine transferase [Staphylococcus aureus 930918-3]
 gi|259161913|gb|EEW46496.1| dimethyladenosine transferase [Staphylococcus aureus D30]
 gi|262074403|gb|ACY10376.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940064|emb|CBI48440.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282320302|gb|EFB50644.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           D139]
 gi|282592471|gb|EFB97483.1| dimethyladenosine transferase [Staphylococcus aureus A9765]
 gi|282762518|gb|EFC02658.1| dimethyladenosine transferase [Staphylococcus aureus A8117]
 gi|283461109|gb|EFC08195.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283469785|emb|CAQ48996.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ST398]
 gi|285816192|gb|ADC36679.1| Dimethyladenosine transferase [Staphylococcus aureus 04-02981]
 gi|294822776|gb|EFG39212.1| dimethyladenosine transferase [Staphylococcus aureus A9754]
 gi|294967739|gb|EFG43771.1| dimethyladenosine transferase [Staphylococcus aureus A8819]
 gi|297176649|gb|EFH35911.1| dimethyladenosine transferase [Staphylococcus aureus A8796]
 gi|312828988|emb|CBX33830.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315128619|gb|EFT84622.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315196174|gb|EFU26530.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329313211|gb|AEB87624.1| Ribosomal RNA small subunit methyltransferase A [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329725046|gb|EGG61541.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           21172]
 gi|329729797|gb|EGG66194.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           21189]
 gi|329731076|gb|EGG67448.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 297

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L 
Sbjct: 10  PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122
              A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++
Sbjct: 70  -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  YG LS++  + T
Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 287


>gi|253730960|ref|ZP_04865125.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253735227|ref|ZP_04869392.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|297207404|ref|ZP_06923843.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300910363|ref|ZP_07127816.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380509|ref|ZP_07363186.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|253725310|gb|EES94039.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726787|gb|EES95516.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|296887967|gb|EFH26861.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300888352|gb|EFK83539.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302750383|gb|ADL64560.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340954|gb|EFM06877.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320139421|gb|EFW31299.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144198|gb|EFW35966.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 303

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L 
Sbjct: 16  PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122
              A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++
Sbjct: 76  -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 133

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  YG LS++  + T
Sbjct: 134 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 190

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 191 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 250

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 251 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 293


>gi|118600900|sp|Q2YVV2|RSMA_STAAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 297

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 144/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L 
Sbjct: 10  PSRMRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122
              A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++
Sbjct: 70  -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  YG LS++  + T
Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 287


>gi|82750200|ref|YP_415941.1| dimethyladenosine transferase [Staphylococcus aureus RF122]
 gi|82655731|emb|CAI80130.1| dimethyladenosine transferase [Staphylococcus aureus RF122]
          Length = 303

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 144/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L 
Sbjct: 16  PSRMRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122
              A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++
Sbjct: 76  -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 133

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  YG LS++  + T
Sbjct: 134 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 190

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 191 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 250

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 251 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 293


>gi|168333630|ref|ZP_02691890.1| dimethyladenosine transferase [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 283

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 149/288 (51%), Gaps = 13/288 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M         K +LS Y  I KK  GQNFL+D ++L KI  ++       V+EIG G G+
Sbjct: 1   MNKIATPGGTKAVLSKYPFILKKKYGQNFLIDEHVLTKIISAANISKNDCVLEIGPGIGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           +TQ LL   A++VI +E D++  PIL +    + N   +I +D LK+D ++     + I+
Sbjct: 61  VTQELLEH-AQEVIAVEIDKELIPILNNQFGSYDN-FALINEDFLKLDLKEVLKGXTNIK 118

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY I T ++   + ++     + ++T++ QKEV +RITA   +  YG +S    +
Sbjct: 119 VVANLPYYITTPIIMALLESELP---FINITVMVQKEVADRITALPGTKEYGSISASIAY 175

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR 238
             K  ++ ++  H F P P V S VI    + NP       E   K+ + AF +RRKT+ 
Sbjct: 176 YAKVRLVANVPMHSFLPRPTVNSAVIELELYRNPPVDLKNKEVFFKVIRAAFSQRRKTIL 235

Query: 239 QSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +L           +NLL  A I  N+R E L   +F  ++N++   Q
Sbjct: 236 NTLSNNFNIDKKQLKNLLEVADIAENVRGETLGTSEFAILSNLICSTQ 283


>gi|151220668|ref|YP_001331490.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|172048766|sp|A6QEE6|RSMA_STAAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|150373468|dbj|BAF66728.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           str. Newman]
          Length = 297

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L 
Sbjct: 10  PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGIGSLTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122
              A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++
Sbjct: 70  -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  YG LS++  + T
Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 287


>gi|298693823|gb|ADI97045.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 297

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L 
Sbjct: 10  PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122
              A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++
Sbjct: 70  -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKKAVENHLQDCEKIMVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  YG LS++  + T
Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 287


>gi|220933005|ref|YP_002509913.1| dimethyladenosine transferase [Halothermothrix orenii H 168]
 gi|254807869|sp|B8D0I2|RSMA_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|219994315|gb|ACL70918.1| dimethyladenosine transferase [Halothermothrix orenii H 168]
          Length = 301

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 146/279 (52%), Gaps = 19/279 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            I+  Y +   K +GQNFL+D NI+ KI  ++   +   VIEIG G G+LTQ ++    R
Sbjct: 13  EIIRKYNLKLHKGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGR 72

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----PIRIIANLPY 127
            V   EKD++   +L+++ + + N LE+I  D L+VD++ FF+        ++++ANLPY
Sbjct: 73  -VFAFEKDKRLVKVLRELFNGY-NHLEVIGQDVLEVDWKHFFDSRGISDRSVKVLANLPY 130

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++   + ++     +  + L+ QKEV +R+ A   S  YG LSV   +  +  + 
Sbjct: 131 YITTPVIMGLLESNI---TFSLMVLMVQKEVADRMAAAPGSKDYGALSVAVQYYGEVEIF 187

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
             + P VF P P+V S++I   PH  P+          K+ +  F +RRKTL+ SL +  
Sbjct: 188 HKVPPTVFIPRPRVYSSIIKIKPHSEPVYRVKNEGFFFKMVRAIFQQRRKTLKNSLTKSS 247

Query: 246 --------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                       + + G++  +R E L+I+    ++N L
Sbjct: 248 EIKLDKGIVTEAIRELGLDPRIRGEKLTIKQMAILSNTL 286


>gi|71276283|ref|ZP_00652561.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Dixon]
 gi|71898488|ref|ZP_00680660.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1]
 gi|71162891|gb|EAO12615.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Dixon]
 gi|71731801|gb|EAO33860.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1]
          Length = 297

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 121/259 (46%), Gaps = 10/259 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQ+FL+D   + +I  +        ++EIG G G +T  LL      +  IE D+
Sbjct: 42  AKKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 100

Query: 81  QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138
                L   ++  P  +L+II  D L VD           +R++ NLPYNI + +LF+ +
Sbjct: 101 DLIAPL--TAAATPIGKLDIIHRDVLTVDLSILAKQGNKKLRMVGNLPYNISSPILFHVL 158

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV +R+ A   S  YGRLSV+     + T MF + P  F P 
Sbjct: 159 QQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPP 215

Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S +   +P           +    I + AFG+RRKTLR SL  +        AGI 
Sbjct: 216 PKVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIR 275

Query: 257 TNLRAENLSIEDFCRITNI 275
           TN RAE L + +F  + N 
Sbjct: 276 TNARAEQLEVTEFIALANA 294


>gi|229825723|ref|ZP_04451792.1| hypothetical protein GCWU000182_01086 [Abiotrophia defectiva ATCC
           49176]
 gi|229790286|gb|EEP26400.1| hypothetical protein GCWU000182_01086 [Abiotrophia defectiva ATCC
           49176]
          Length = 300

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 147/299 (49%), Gaps = 24/299 (8%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M    +  +   IL  Y    +K  GQNFL+D ++L+KI +++       V+EIG G G 
Sbjct: 1   MADLGQPQNTIAILKKYDFTFQKKFGQNFLIDTHVLEKIVDAADIGKDDLVLEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           +TQ L    AR+VI +E D++   ILKD  S + N +E+I +D LKVD        N   
Sbjct: 61  VTQYLCE-AARQVIAVEIDRKLIKILKDTLSAYDN-VEVINEDILKVDIAALVEEKNEGK 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI++++NLPY I T ++   +           +TL+ Q+EV  R+ A   +  YG LS+ 
Sbjct: 119 PIKVVSNLPYYITTPIIMTLLEKRVP---VTDMTLMMQEEVARRMQAAPGNKDYGALSLA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             + +   +   +  + F P P V S V++   H  P       E + K+ + +F +RRK
Sbjct: 176 VQYYSVPYIAAFVPQNCFMPRPNVGSAVVNLKCHEKPPVEVMDEELMFKLIKASFAQRRK 235

Query: 236 TLRQSL---------KRLGGENLLHQAGI-----ETNLRAENLSIEDFCRITNILTDNQ 280
           TL+  L         K    E +L    +        +R E L++++F  +++I ++N+
Sbjct: 236 TLQNGLTNSAELDFTKEEITEAILKMQELLGMKQNPLIRGETLTLKEFACLSDIFSNNK 294


>gi|58583371|ref|YP_202387.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84625195|ref|YP_452567.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188575373|ref|YP_001912302.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|62900457|sp|Q5GWB9|RSMA_XANOR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365863|sp|Q2NZI4|RSMA_XANOM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732641|sp|B2SPT3|RSMA_XANOP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|58427965|gb|AAW77002.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84369135|dbj|BAE70293.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519825|gb|ACD57770.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 262

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 124/257 (48%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL      + VIE D+
Sbjct: 9   AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L + ++     L II  D L VDF    +  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+       T +F + P  F P PK
Sbjct: 126 AA---VVADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCDVTALFVVPPGAFRPPPK 182

Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +P                + +  FG+RRKTLR +L  +        A +  +
Sbjct: 183 VDSAVVRLVPRDPATVHINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAQVRPD 242

Query: 259 LRAENLSIEDFCRITNI 275
            RAE L + DF R+ N+
Sbjct: 243 ARAEQLEVADFIRLANV 259


>gi|188591258|ref|YP_001795858.1| dimethyladenosine transferase [Cupriavidus taiwanensis LMG 19424]
 gi|226729776|sp|B2AH89|RSMA_CUPTR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|170938152|emb|CAP63138.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           (kasugamycin resistance) [Cupriavidus taiwanensis LMG
           19424]
          Length = 277

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/273 (31%), Positives = 127/273 (46%), Gaps = 16/273 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   + +K  GQNFL+D  I+  I  +     G  ++EIG G G LT  LL     ++ V
Sbjct: 6   HQGHVARKRFGQNFLVDDTIIHGIVNAISPQAGDVLVEIGPGLGALTDPLLERIP-QMQV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+     +  RL++   DAL  DF+K      P+RI+ NLPYNI + LLF
Sbjct: 65  VELDRDLVERLRRR---YGERLQVHAGDALDFDFDKLAVPGRPLRIVGNLPYNISSPLLF 121

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +    +         + QKEV ER+ A+  S  +GRLS++   R     + D+ P  F
Sbjct: 122 HLME---FADHVHDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHVLDVPPGAF 178

Query: 196 FPSPKVTSTVIHFIP---------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            P PKV S V+  IP               C +  L  +   AF +RRK LR +L  L  
Sbjct: 179 NPPPKVDSAVVRMIPWPRHGDGRLRSPHADCDITVLGDVVTAAFSQRRKVLRNTLSFLRD 238

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +      G +   RAE + + ++  +   L D 
Sbjct: 239 QVDFDAMGFDLGRRAEEVPVGEYVELARRLGDK 271


>gi|170730479|ref|YP_001775912.1| dimethyladenosine transferase [Xylella fastidiosa M12]
 gi|182681823|ref|YP_001829983.1| dimethyladenosine transferase [Xylella fastidiosa M23]
 gi|167965272|gb|ACA12282.1| rRNA (adenine-N(6)-)-methyltransferase [Xylella fastidiosa M12]
 gi|182631933|gb|ACB92709.1| dimethyladenosine transferase [Xylella fastidiosa M23]
 gi|307578073|gb|ADN62042.1| dimethyladenosine transferase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 297

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 121/259 (46%), Gaps = 10/259 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQ+FL+D   + +I  +        ++EIG G G +T  LL      +  IE D+
Sbjct: 42  AKKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 100

Query: 81  QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138
                L   ++  P  +L+II  D L VD           +R++ NLPYNI + +LF+ +
Sbjct: 101 DLIAPL--TAAATPIGKLDIIHRDVLTVDLSILAKQGNKKLRLVGNLPYNISSPILFHVL 158

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV +R+ A   S  YGRLSV+     + T MF + P  F P 
Sbjct: 159 QQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPP 215

Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S +   +P           +    I + AFG+RRKTLR SL  +        AGI 
Sbjct: 216 PKVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIR 275

Query: 257 TNLRAENLSIEDFCRITNI 275
           TN RAE L + +F  + N 
Sbjct: 276 TNARAEQLEVTEFIALANA 294


>gi|258513475|ref|YP_003189697.1| dimethyladenosine transferase [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777180|gb|ACV61074.1| dimethyladenosine transferase [Desulfotomaculum acetoxidans DSM
           771]
          Length = 305

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 19/292 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    +  +   +     K +GQNFL+D NI+ KI  ++       V+EIG G G 
Sbjct: 1   MSELSSPSKVFNLFKEFNFHTNKKLGQNFLIDSNIISKIISAADLRSEDLVVEIGPGLGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----NI 115
           LTQ +    +R V+ IE D++  PIL+    ++ N  ++I  DALK DF++         
Sbjct: 61  LTQSIADEVSR-VLSIEIDRKLQPILEVNLKEYSNT-KVIFQDALKTDFDRLVYAEAGGK 118

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           S   ++IANLPY I T LL + + +       E + ++ Q+EV ER+TA      YG LS
Sbjct: 119 SRSYKVIANLPYYITTPLLMHILESKFN---VELIVIMVQREVAERMTAPPGKKDYGALS 175

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKR 233
           V   + T+  ++  +   VF P+P+V STVI  I    P       +    + + AF +R
Sbjct: 176 VAVQYYTEPEIICRVPKTVFIPAPEVDSTVIRLIKRKLPPVQLKSEKLFFNLVRTAFNQR 235

Query: 234 RKTLRQSLK----RLGGENL---LHQAGIETNLRAENLSIEDFCRITNILTD 278
           RKT+  +++     L  E     L +AGI+   R E  S++DF  ++N + +
Sbjct: 236 RKTVLNAMQGSNWGLMKEEWKIILEKAGIDPMRRGETFSLQDFAMLSNCVYE 287


>gi|78222518|ref|YP_384265.1| dimethyladenosine transferase [Geobacter metallireducens GS-15]
 gi|118600869|sp|Q39W34|RSMA_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78193773|gb|ABB31540.1| dimethyladenosine transferase [Geobacter metallireducens GS-15]
          Length = 275

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/270 (32%), Positives = 134/270 (49%), Gaps = 16/270 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I  +K +GQNFL+D ++L +IA+         ++E+G G G LT+ML    AR ++ +E
Sbjct: 5   GIRARKALGQNFLVDRHVLARIADIVDMRPDDRILEVGPGKGALTEMLAHRCAR-LVAVE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLF 135
            D +  P+L+     +P R+EI+  D L++D      +      ++ ANLPYNI T +LF
Sbjct: 64  LDTRLVPVLRQAFRDNP-RVEIVHGDILEIDLRDLLAYEGGERWKVAANLPYNISTPVLF 122

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            ++        +  L L+ QKEVG+R+ A   +  YG LSV        T    + P  F
Sbjct: 123 AFLDNRD---LFSRLVLMLQKEVGDRLAASPGTKDYGILSVFFQLHFDVTREMIVRPGSF 179

Query: 196 FPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-------G 246
            P PKV S V+ F+P   P       +  +++ + AF  RRKTL   LK  G        
Sbjct: 180 HPVPKVDSAVLSFVPLEKPRVAVGDEQYFRRLVKGAFSMRRKTLWNCLKNAGLGLSGEQL 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              L   GIE   R E LS+++F  ++  +
Sbjct: 240 SEALAVCGIEPGRRGETLSLDEFAALSRAM 269


>gi|289663557|ref|ZP_06485138.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 262

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 125/257 (48%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL      + VIE D+
Sbjct: 9   AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L + ++     L II  D L VDF    +  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PK
Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182

Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +P                + +  FG+RRKTLR +L  +        A +  +
Sbjct: 183 VDSAVVRLVPRDPATVQINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAQVRPD 242

Query: 259 LRAENLSIEDFCRITNI 275
            RAE L + DF R+ N+
Sbjct: 243 ARAEQLEVADFIRLANV 259


>gi|317120934|ref|YP_004100937.1| dimethyladenosine transferase [Thermaerobacter marianensis DSM
           12885]
 gi|315590914|gb|ADU50210.1| dimethyladenosine transferase [Thermaerobacter marianensis DSM
           12885]
          Length = 310

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 132/291 (45%), Gaps = 22/291 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           +   L+  L  Y + P + +GQNFL+D +  ++I  +        V+E+G G G LT+ L
Sbjct: 14  RRAELRRWLEQYGVRPSRRLGQNFLVDDHWAERIVGAVEPGPDDVVLEVGPGLGALTERL 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           +   A +V+ +E D++    L+   +   N  +++  D L+VD              +  
Sbjct: 74  VRR-AGRVVAVEVDRRLAEALRQRLACVDN-FQLVVADVLQVDLADLVARHLAPVGGDDM 131

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +++ +NLPY I +  L  W+ +      WE   L  Q EV +R+ A   +  YG L+V
Sbjct: 132 PAVKLASNLPYAITSPFLVRWLGSSV---RWERAVLTLQAEVVDRLVAAPGTAAYGALTV 188

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRR 234
              +  +   +  +    F+P P+V S V+   PH  P       ++L  + + AF +RR
Sbjct: 189 FVAYHARVERLGIVPAGAFWPRPEVDSAVVRLWPHPQPPVAVADPDALFALVRAAFSQRR 248

Query: 235 KTLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           K L  +L       R   E     AG++   R E + +E F R+ N L  +
Sbjct: 249 KRLANALAAHPAVDRRQAEAACRAAGLDPGARPEEVDLEGFARLANQLFSS 299


>gi|73540206|ref|YP_294726.1| dimethyladenosine transferase [Ralstonia eutropha JMP134]
 gi|119365051|sp|Q475Q1|RSMA_RALEJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|72117619|gb|AAZ59882.1| dimethyladenosine transferase [Ralstonia eutropha JMP134]
          Length = 278

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/270 (30%), Positives = 126/270 (46%), Gaps = 16/270 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   + +K  GQNFL+D +I+  I  +   L    ++EIG G G LT  LL     ++ V
Sbjct: 6   HQGHVARKRFGQNFLVDDSIIHGIVNAINPLADDVLVEIGPGLGALTDPLLERVP-QMQV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+     + +RL++   DAL  DF +      P+RI+ NLPYNI + LLF
Sbjct: 65  VELDRDLVERLRRR---YGDRLQVHAGDALAFDFGRLAVPGRPLRIVGNLPYNISSPLLF 121

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +              + QKEV +R+ A+  S  +GRLS++   R     + D+ P  F
Sbjct: 122 HLMDYADH---VHDQHFMLQKEVVDRMVAEPGSKAFGRLSIMLQVRYHMEHVLDVPPGSF 178

Query: 196 FPSPKVTSTVIHFIP---------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            P PKV S V+  IP               C +  L  +   AF +RRK LR +L  L  
Sbjct: 179 NPPPKVDSAVVRMIPWPRTESGRLRSPHADCDITVLGDLVTAAFSQRRKVLRNTLSFLRD 238

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +      G +   RAE + + ++  +   L
Sbjct: 239 QIDFEAIGFDLGRRAEEVPVGEYVELARRL 268


>gi|49482720|ref|YP_039944.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257424604|ref|ZP_05601032.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427270|ref|ZP_05603671.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257429907|ref|ZP_05606293.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257432610|ref|ZP_05608972.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257435514|ref|ZP_05611564.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903078|ref|ZP_06310970.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C160]
 gi|282904868|ref|ZP_06312728.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282913320|ref|ZP_06321111.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918274|ref|ZP_06326014.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282923025|ref|ZP_06330711.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957282|ref|ZP_06374740.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500369|ref|ZP_06666221.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509307|ref|ZP_06668023.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M809]
 gi|293515896|ref|ZP_06670586.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427027|ref|ZP_06819664.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|62900528|sp|Q6GJH8|RSMA_STAAR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49240849|emb|CAG39516.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272631|gb|EEV04751.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275921|gb|EEV07389.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279423|gb|EEV10018.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257282475|gb|EEV12608.1| ribosomal RNA adenine dimethylase [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257285151|gb|EEV15268.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314544|gb|EFB44931.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317840|gb|EFB48209.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322791|gb|EFB53111.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282331985|gb|EFB61494.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596504|gb|EFC01464.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           C160]
 gi|283791206|gb|EFC30016.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290921304|gb|EFD98362.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096329|gb|EFE26589.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467852|gb|EFF10362.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           M809]
 gi|295129030|gb|EFG58659.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|315193854|gb|EFU24248.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 297

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L 
Sbjct: 10  PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122
              A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++
Sbjct: 70  -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  YG LS++  + T
Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEIGSKAYGSLSIVVQYYT 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 245 YQNYFKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKLYE 287


>gi|297591597|ref|ZP_06950234.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|297575466|gb|EFH94183.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312436418|gb|ADQ75489.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 303

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L 
Sbjct: 16  PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122
              A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++
Sbjct: 76  -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 133

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  YG LS++  + T
Sbjct: 134 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEIGSKAYGSLSIVVQYYT 190

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 191 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 250

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 251 YQNYFKDGKQHKEVIIQWLEQAGIDPRRRGETLSIQDFAKLYE 293


>gi|261855877|ref|YP_003263160.1| dimethyladenosine transferase [Halothiobacillus neapolitanus c2]
 gi|261836346|gb|ACX96113.1| dimethyladenosine transferase [Halothiobacillus neapolitanus c2]
          Length = 285

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 15/272 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ +I  +        ++EIG G G LT  L+      + V+E
Sbjct: 10  GHRARKRFGQNFLTDEAVIARIVSAIAPKADDRLVEIGPGLGALTCQLI-QPLTHLTVVE 68

Query: 78  KDQQFFPILKDISSQ--------HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            D+   P L    S+          ++L +++ DAL ++ E       P+RI  NLPYNI
Sbjct: 69  LDRDIIPKLLARCSKQKTAHDQSSQSKLTVLEQDALTLNLEPLA-CEGPLRIAGNLPYNI 127

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+ +           +T + QKEV +R+ A   +  YGRLS++     +   +F 
Sbjct: 128 ATPLIFHLLEQSKH---IIDMTFMLQKEVVDRLAAHPGNRDYGRLSLMVQAVAEVESLFV 184

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  +P  +P+ P  L++L   +   AF  RRKTL+ +LK     
Sbjct: 185 VPPTAFNPPPKVDSAIVRLVPRTHPLVPDDLKALFGELVSLAFAHRRKTLQNNLKHRLPT 244

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           + +  AGI+   RAE +S+++F  +  ++ + 
Sbjct: 245 STIVLAGIDPGTRAEQVSLDEFITLARLVKEQ 276


>gi|71901524|ref|ZP_00683609.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1]
 gi|71728711|gb|EAO30857.1| RRNA 16S rRNA dimethylase [Xylella fastidiosa Ann-1]
          Length = 297

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/259 (32%), Positives = 121/259 (46%), Gaps = 10/259 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQ+FL+D   + +I           ++EIG G G +T  LL      +  IE D+
Sbjct: 42  AKKAFGQHFLVDRYYIDRIIHVINPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 100

Query: 81  QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138
                L   ++  P  +L+II  D LKVD           +R++ NLPYNI + +LF+ +
Sbjct: 101 DLIAPL--TAAATPIGKLDIIHSDVLKVDLSILAKQGNKKLRLVGNLPYNISSPILFHVL 158

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV +R+ A   S  YGRLSV+     + T MF + P  F P 
Sbjct: 159 QQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPP 215

Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S +   +P           +    I + AFG+RRKTLR SL  +        AGI 
Sbjct: 216 PKVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIR 275

Query: 257 TNLRAENLSIEDFCRITNI 275
           TN RAE L + +F  + N 
Sbjct: 276 TNARAEQLEVTEFIALANA 294


>gi|332971060|gb|EGK10030.1| dimethyladenosine transferase [Desmospora sp. 8437]
          Length = 294

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/292 (30%), Positives = 146/292 (50%), Gaps = 19/292 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M     +   + +L+   +  KK +GQ+FL D  IL K+ E++G      V+EIG G G 
Sbjct: 4   MDEVRIAERTRQLLAERGLRLKKSLGQHFLTDRRILDKMMEAAGLGPEAGVLEIGPGIGA 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNIS 116
           LT+ L  + A +V+ +E D++  P+L  + S  P+ + I+Q D + +D  +         
Sbjct: 64  LTERLA-VEAGQVVAVELDERLIPVLSSLFSDQPH-VRIVQGDVMSLDLSRLLQDHLGDC 121

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           S I ++ANLPY + T +L   +         + + ++ QKEV ER+TA   S  YG ++V
Sbjct: 122 SRISVVANLPYYVTTPILMRLLEEKLP---LDRIVIMIQKEVAERLTASPGSKAYGSITV 178

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRR 234
            T +  +   +  +  HVF P P+V S VI       P     +   L ++ + AFG+RR
Sbjct: 179 ATRYYAETEWVTKVPAHVFVPRPQVDSAVIRLKIRQRPPVEVRDEALLFRVIRAAFGQRR 238

Query: 235 KTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           KTL  +L     +         +L + GI+   R E LS+E+F  ++N L +
Sbjct: 239 KTLLNALSTGAVDGEGKETISRVLSETGIDPKRRGETLSLEEFALLSNRLHE 290


>gi|27262374|gb|AAN87468.1| Dimethyladenosine transferase [Heliobacillus mobilis]
          Length = 283

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 145/285 (50%), Gaps = 18/285 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S  L+  ++ Y I  KK +GQNFL D   + +I +++    G  V+EIG GP  LT  L 
Sbjct: 2   SKELRQRIAQYGIRAKKGLGQNFLSDSEYVYRIVDAAELSSGDVVVEIGPGPATLTPHLA 61

Query: 67  TL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRI 121
                  KV+ IE D+   P+L D+  ++P ++EI+  DALKVD++          P  +
Sbjct: 62  EAVGPEGKVLAIEVDESLRPLLMDLCREYP-QVEILWQDALKVDYDAVTAPYRGDKPFTL 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T ++   +           + ++ QKEV +R+ A+  +  YG LSV   + 
Sbjct: 121 VANLPYYITTPIMMGLLEGRFN---LSHMVIMVQKEVADRMLARAGTKDYGALSVAVQYH 177

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ 239
            +  ++  + P  F P PKV+S V+       P       ++  ++ + AF +RRKTL  
Sbjct: 178 CEVKLVTKVPPGAFIPPPKVSSAVVRLNRRRQPPVHVFDEKAFFRVVRAAFNQRRKTLLN 237

Query: 240 SLKRLGGE-------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +L  LG E         L QAGI+   R E L++++F R+T+ L 
Sbjct: 238 ALGGLGLEMTKTEMSERLAQAGIDPGRRGETLNLDEFARVTDALY 282


>gi|166710725|ref|ZP_02241932.1| dimethyladenosine transferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 262

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 124/257 (48%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL      + VIE D+
Sbjct: 9   AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L + ++     L II  D L VDF    +  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+       T +F + P  F P PK
Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCDVTALFVVPPGAFRPPPK 182

Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +P                + +  FG+RRKTLR +L  +        A +  +
Sbjct: 183 VDSAVVRLVPRDPATVHINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAAQVRPD 242

Query: 259 LRAENLSIEDFCRITNI 275
            RAE L + DF R+ N+
Sbjct: 243 ARAEQLEVADFIRLANV 259


>gi|94309384|ref|YP_582594.1| dimethyladenosine transferase [Cupriavidus metallidurans CH34]
 gi|118600890|sp|Q1LRA1|RSMA_RALME RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|93353236|gb|ABF07325.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Cupriavidus metallidurans CH34]
          Length = 278

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 121/270 (44%), Gaps = 16/270 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   + +K  GQNFL+D  I+  I  +        V+EIG G G LT  LL      + V
Sbjct: 6   HQGHVARKRFGQNFLVDDGIIHGIVSAIDPQPNDIVVEIGPGLGALTDPLLERLPG-MQV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+     + +RL +   DAL  DF K       +RI+ NLPYNI + LLF
Sbjct: 65  VELDRDLVERLRRR---YGDRLVVHAGDALAFDFGKLREPGRALRIVGNLPYNISSPLLF 121

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +    +         + QKEV ER+ A   S  YGRLS++   R     + D+ P  F
Sbjct: 122 HLV---DFADDVRDQHFMLQKEVVERMVADPGSKSYGRLSIMLQVRYHMEHVLDVPPASF 178

Query: 196 FPSPKVTSTVIHFIP---------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            P PKV S V+  IP               C    L  +   AF +RRK LR +L  L  
Sbjct: 179 NPPPKVDSAVVRMIPWPRAEDGTLRSPYAACDAGVLGDVVTAAFSQRRKVLRNTLSFLRD 238

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +      G +   RAE + + ++  +  I+
Sbjct: 239 QVDFDALGFDLTRRAEEVPVAEYVELARIV 268


>gi|227432115|ref|ZP_03914127.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352142|gb|EEJ42356.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 303

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 152/291 (52%), Gaps = 20/291 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N + + + IL+ Y +  KK  GQNFL DLN+L  I E++       VIEIG G G LT
Sbjct: 15  IANPTRT-QAILNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALT 73

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118
           + L    A+KV+  E D Q   +L D    + N +++I++D LKVD  K     F  ++ 
Sbjct: 74  EQLA-RSAKKVLAFEIDSQMVEVLADTLKPYDN-VKVIENDVLKVDLAKIISEEFGDNAH 131

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++I+ANLPY I T +L   + ++     W+++ ++ Q+EV +R+ A   +  YG L++  
Sbjct: 132 VKIVANLPYYITTPILIQLLRSNIN---WDNIVVMMQREVADRLNAAVGTKSYGVLTLTI 188

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTL 237
            +  +AT+   +    F PSP V S V+   P     I   +  L  + + +F  RRK+L
Sbjct: 189 QYFAQATLAIKVPASSFNPSPNVDSAVVKLTPLKPTTIVENVGKLFGVIKGSFSHRRKSL 248

Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             ++ +  G++          L  A I+  +RAE L++E F ++  +L D 
Sbjct: 249 WNNMLQTYGKDAGTKEQLTVALKSAQIDPAIRAERLNLEQFTQLYLVLRDQ 299


>gi|309775087|ref|ZP_07670100.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917201|gb|EFP62928.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 285

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 14/278 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  + +  KK  GQNFL++  I+ KIA  +   +   V EIG G G LTQ L 
Sbjct: 8   PSRTKEILETHGMFAKKNYGQNFLIESGIVDKIARHAVISNHCVVFEIGPGIGALTQYLC 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A+KVI  E D++   +L D   ++ N  E++  D L+ D     E +      I + 
Sbjct: 68  EY-AKKVISFEIDERLPEVLADTLQEYDN-FELVMTDFLETDLNHWCEPYKKEGCDIVVA 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +LF    +       +++T++ QKEV +R  A  N+  Y  LS++T +R 
Sbjct: 126 ANLPYYITTPILFKIFESGAP---IDAITVMMQKEVADRFAATVNTKDYNALSIITQYRC 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +   +  +  +VF P P V S V+ F     P     E    + +  F +RRKT+  +  
Sbjct: 183 EVLPVMKVPKNVFLPKPNVDSAVLQFRFKETPSDIDEELFFPLVKACFRQRRKTILNNYG 242

Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITNI 275
                     + L ++GI    RAE++++E+F R+  +
Sbjct: 243 EYIQDKQRARDELEKSGIACARRAESVTLEEFIRLYEV 280


>gi|325141930|gb|EGC64370.1| dimethyladenosine transferase [Neisseria meningitidis 961-5945]
 gi|325197917|gb|ADY93373.1| dimethyladenosine transferase [Neisseria meningitidis G2136]
          Length = 259

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 129/261 (49%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F NI    +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E++  ++N L 
Sbjct: 235 PQDRAEHIAPEEYVALSNYLA 255


>gi|241896677|ref|ZP_04783973.1| dimethyladenosine transferase [Weissella paramesenteroides ATCC
           33313]
 gi|241870158|gb|EER73909.1| dimethyladenosine transferase [Weissella paramesenteroides ATCC
           33313]
          Length = 298

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 146/283 (51%), Gaps = 21/283 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + I++ + I  KK +GQNFL D+NILK I  +        VIEIG G G LT+ L    
Sbjct: 13  TQAIMNSFGINTKKSLGQNFLTDINILKNIVAAGNVQPTDNVIEIGPGIGALTEQLA-RA 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIAN 124
           A++V+  E D +  P+L+   + + N + ++  D L VD E+     F +  +P++++AN
Sbjct: 72  AKQVVAFEIDDRLIPVLEHTMAPYDN-VTVVNQDILTVDLEQAIKEHFTDPEAPLKLVAN 130

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY I T +L   + +D     + ++ ++ QKEV  R++A+  +  YG L++   +R  A
Sbjct: 131 LPYYITTPILMQVLQSDVK---FANIVVMMQKEVASRLSAEVGTKDYGALTLAVQYRMNA 187

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLK 242
           T+ F +S   F P+P V S +I   P      +P   + L  + +  F  RRKTL  +L 
Sbjct: 188 TLAFTVSRTAFVPNPNVDSAIISLTPREPLKVLPHNEKQLFNLFKIGFTMRRKTLWNNLI 247

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
              G++          L    ++  +RAE LS+E F  + N L
Sbjct: 248 TAFGKDDAMKAKLTAALADIDLDPRIRAEKLSLEKFIDLHNAL 290


>gi|116618707|ref|YP_819078.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122271093|sp|Q03VR7|RSMA_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116097554|gb|ABJ62705.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 295

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 150/291 (51%), Gaps = 20/291 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N + + + IL+ Y +  KK  GQNFL DLN+L  I E++       VIEIG G G LT
Sbjct: 7   IANPTRT-QAILNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALT 65

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118
           + L    A+KV+  E D Q   +L D    + N +++I++D LKVD  K     F  ++ 
Sbjct: 66  EQLA-RSAKKVLAFEIDSQMVEVLADTLKPYDN-VKVIENDVLKVDLAKVISEEFGDNAH 123

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++I+ANLPY I T +L   + ++     W+++ ++ Q+EV +R+ A   +  YG L++  
Sbjct: 124 VKIVANLPYYITTPILIQLLRSNIN---WDNIVVMMQREVADRLNAAVGTKSYGVLTLTI 180

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTL 237
            +  +AT+   +    F PSP V S V+   P         +  L  + + +F  RRK+L
Sbjct: 181 QYFAQATLAIKVPASSFNPSPNVDSAVVKLTPLKPTTVVENVGKLFGVIKGSFSHRRKSL 240

Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             ++ +  G++          L  A I+  +RAE L++E F ++   L D 
Sbjct: 241 WNNMLQTYGKDAGTKEQLTVALKSAQIDPAIRAERLNLEQFTQLYLALRDQ 291


>gi|161830385|ref|YP_001595993.1| dimethyladenosine transferase [Coxiella burnetii RSA 331]
 gi|226729775|sp|A9N9I7|RSMA_COXBR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|161762252|gb|ABX77894.1| dimethyladenosine transferase [Coxiella burnetii RSA 331]
          Length = 258

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 99/261 (37%), Positives = 142/261 (54%), Gaps = 8/261 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  +K  GQ+FL D  +L+KI  +       T++EIG G G LT  LLT     + ++E
Sbjct: 3   KMPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   +Q  N + I Q+DAL+ DF        P+R++ NLPYNI T LLF+ 
Sbjct: 62  IDRDLVAFLQKKYNQQKN-ITIYQNDALQFDFSSV-KTDKPLRVVGNLPYNISTPLLFHL 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
            S        E +  + QKEV  RITA+  S  YGRLSV+  +    T +F +SP  F P
Sbjct: 120 FSQIHC---IEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAKYFCDNTYLFTVSPQAFTP 176

Query: 198 SPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P+V S +I  IP  N  P+   L+ L  + +EAF  RRKT+  +LK+L   +      I
Sbjct: 177 PPRVESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEI 236

Query: 256 ETNLRAENLSIEDFCRITNIL 276
              LR + L++EDF +I+NIL
Sbjct: 237 NPQLRPQELTVEDFVKISNIL 257


>gi|78046456|ref|YP_362631.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|119365862|sp|Q3BX82|RSMA_XANC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78034886|emb|CAJ22531.1| Dimethyladenosine transferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 262

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/257 (32%), Positives = 126/257 (49%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL      + VIE D+
Sbjct: 9   AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRR-HGALTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L ++++     L II  D L VDF    N  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTEVAAPI-GALSIIHRDVLSVDFTALAN-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PK
Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182

Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +P                + +  FG+RRKTLR +L  +        A +  +
Sbjct: 183 VDSAVVRLVPRDPATVQINDRRRFADVVRAGFGQRRKTLRNALSTICEPAHFDAAQVRPD 242

Query: 259 LRAENLSIEDFCRITNI 275
            RAE L + DF R+ N+
Sbjct: 243 ARAEQLEVADFIRLANV 259


>gi|46190717|ref|ZP_00206545.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Bifidobacterium longum DJO10A]
          Length = 321

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 22/293 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 28  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAANHVMEVGPGLGSLTLAIL 87

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120
             GA  +  +E D      L     +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 88  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 146

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 147 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 203

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228
              A  +  I  +VF+P+P V S ++ F  +    P               E + ++   
Sbjct: 204 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLIDA 263

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 264 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 316


>gi|332978369|gb|EGK15092.1| dimethyladenosine transferase [Psychrobacter sp. 1501(2011)]
          Length = 297

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 97/295 (32%), Positives = 141/295 (47%), Gaps = 20/295 (6%)

Query: 1   MTMNN-KSHSLKTILSHY-KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           MT ++   H L + L    K  P+K  GQNFL D +I+ +I +S G      ++EIG G 
Sbjct: 1   MTHSDASKHPLHSTLQKAAKHQPRKRFGQNFLHDDSIIIQIVDSIGLNRDDNLVEIGPGM 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFN--- 114
           G LT+ LL      + VIE D+     L+  I +       I+  +A++ D+   +N   
Sbjct: 61  GALTEPLLEQ-VDAMTVIELDRDLASSLRIRIGANSHPNFHIVNTNAMQFDYSTLYNKEG 119

Query: 115 ---ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
               +  +RI+ NLPYNI T LLF  +    +    E +  + QKEV ERITA   S  Y
Sbjct: 120 EGAETKKLRIVGNLPYNISTPLLFTLLD---YSDIIEDMHFMLQKEVVERITADVGSKIY 176

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKK-ITQEA 229
           GRLSV+  +  +   +  +    F P PKVTS V    PH   P+    E L   + +E 
Sbjct: 177 GRLSVIMQYHCETEYLLTVPRGAFNPPPKVTSAVFRLRPHLTKPVQAEDEKLFALVVRET 236

Query: 230 FGKRRKTLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           F  RRKTLR   K+        +      GIE   R E L ++DF  ++N++   
Sbjct: 237 FNHRRKTLRAIFKQSSLMATLTDEDFDSIGIEGTARPETLDVKDFVALSNLVNSK 291


>gi|15838739|ref|NP_299427.1| dimethyladenosine transferase [Xylella fastidiosa 9a5c]
 gi|9107283|gb|AAF84947.1|AE004029_7 dimethyladenosine transferase [Xylella fastidiosa 9a5c]
          Length = 290

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 120/258 (46%), Gaps = 8/258 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQ+FL+D   + +I  +        ++EIG G G +T  LL      +  IE D+
Sbjct: 35  AKKAFGQHFLVDRYYIDRIIHAITPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 93

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWIS 139
                L   ++    +L+II  D L VD           +R++ NLPYNI + +LF+ + 
Sbjct: 94  DLIAPLTAAATPL-GKLDIIHRDVLTVDLSILAKPGNKKLRLVGNLPYNISSPILFHVLQ 152

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                     +  + QKEV +R+ A   S  YGRLSV+     + T MF + P  F P P
Sbjct: 153 QAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPPP 209

Query: 200 KVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S +   +P           +    I + AFG+RRKTLR SL  +        AGI T
Sbjct: 210 KVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIRT 269

Query: 258 NLRAENLSIEDFCRITNI 275
           N RAE L + +F  + N 
Sbjct: 270 NARAEQLEVTEFIALANA 287


>gi|325928235|ref|ZP_08189440.1| dimethyladenosine transferase [Xanthomonas perforans 91-118]
 gi|325541395|gb|EGD12932.1| dimethyladenosine transferase [Xanthomonas perforans 91-118]
          Length = 262

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 125/257 (48%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL      + VIE D+
Sbjct: 9   AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRR-HGALTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L + ++     L II  D L VDF    +  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PK
Sbjct: 126 AAA---VTDMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182

Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +P                + +  FG+RRKTLR +L  +        A +  +
Sbjct: 183 VDSAVVRLVPRDPATVQINDRRRFADVVRAGFGQRRKTLRNALSTICEPAHFDAAQVRPD 242

Query: 259 LRAENLSIEDFCRITNI 275
            RAE L + DF R+ N+
Sbjct: 243 ARAEQLEVADFIRLANV 259


>gi|329903504|ref|ZP_08273520.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548327|gb|EGF33015.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480]
          Length = 259

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 136/260 (52%), Gaps = 7/260 (2%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K + +K  GQNFL D  +L+ I ++        ++EIG G G +T++ L     ++ V+E
Sbjct: 2   KHVARKRFGQNFLTDKQVLQDIIQTIAPARADAMVEIGPGLGAMTRL-LLDDLDQLHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFN 136
            D+     L+      P +L I   DAL+ DF          +R++ NLPYNI + LLF+
Sbjct: 61  LDRDLVVRLQKTFD--PKKLLIHSGDALQFDFGTLPVPAGQKLRVVGNLPYNISSPLLFH 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                ++    +    + QKEV ER+ A      YGRLSV+  WR   ++ F + P  F 
Sbjct: 119 L---ASFTALVQDQHFMLQKEVVERMVAAPGGKSYGRLSVMLQWRYAMSLRFIVPPTAFD 175

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S ++  IP  +P+PC  ++L+ +  +AF  RRK LR  L  +  EN L  AG++
Sbjct: 176 PPPRVESAIVRMIPLESPLPCNQQALEAVVLKAFSMRRKVLRNCLAGMFTENQLIDAGVD 235

Query: 257 TNLRAENLSIEDFCRITNIL 276
             LR E +S+E +  + N L
Sbjct: 236 PTLRPETISLEQYVGLANRL 255


>gi|221633286|ref|YP_002522511.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159]
 gi|221155685|gb|ACM04812.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159]
          Length = 297

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 146/282 (51%), Gaps = 18/282 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +L    I P+K +GQ+FL D  I+++I E++       V+EIG G G LT+ L   
Sbjct: 26  PVRQVLRELGIRPRKALGQHFLHDRAIVRRIVETAQLPPDALVVEIGPGLGILTEELA-R 84

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            AR VI +E D +    L +    H   + I+  DAL+VD         P  ++ANLPYN
Sbjct: 85  WARSVIAVELDARLAEQLAERF--HGTNVRIVHGDALEVDLAALTGQC-PYFVVANLPYN 141

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + T +L   +++D  P   E L ++ Q+EV ER+ A+  +  Y  L VL  +     + F
Sbjct: 142 VATPILERLLTSDHPP---ERLVVMVQREVAERMAARPPAMSY--LGVLVQFFALPRVAF 196

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            I P  F P PKV S V+       P+P    +S   + +  F +RRK L  +L    G 
Sbjct: 197 RIGPGAFTPPPKVESAVVVLDRRTPPLPKHHWDSFFALVRAGFAQRRKMLLNALATATGM 256

Query: 248 N------LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           +      LL +AGIE + RAE L++E++ R+  +L  ++D+A
Sbjct: 257 DKEMLRALLQRAGIEPSRRAETLTVEEWLRLWRVL--HEDVA 296


>gi|313900886|ref|ZP_07834376.1| dimethyladenosine transferase [Clostridium sp. HGF2]
 gi|312954306|gb|EFR35984.1| dimethyladenosine transferase [Clostridium sp. HGF2]
          Length = 291

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 137/281 (48%), Gaps = 14/281 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  + +  KK  GQNFL++  I+ KIA  +   D   V EIG G G LTQ L 
Sbjct: 8   PSRTKEILETHGMFAKKNYGQNFLIESGIVDKIARHAVLSDHCVVFEIGPGIGALTQYLC 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A+KV+  E D++   +L D   ++ N  E++  D L++D       +      + I 
Sbjct: 68  EY-AKKVVSFEIDERLPDVLADTLQEYDN-FELVMSDFLEIDLKEWCRTYREEGYDVVIA 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +LF    +        ++T++ QKEV +R  A+ N+  Y  LS++T +R 
Sbjct: 126 ANLPYYITTPILFKIFESKA---DVAAITVMMQKEVADRFAAEVNTKDYNALSIITQYRC 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           + T +  +  +VF P P V S V+ F     P     ES   + +  F +RRKT+  +  
Sbjct: 183 EVTPVMKVPKNVFLPKPNVDSAVLQFRFRDTPQNIEEESFFPLVKACFRQRRKTILNNYG 242

Query: 243 RLGGENL-----LHQAGIETNLRAENLSIEDFCRITNILTD 278
               +       L ++GI+   RAE++++ +F  +  +  +
Sbjct: 243 EYCQDKQQARAELEKSGIDCTRRAESVTLAEFINLYEVHRN 283


>gi|329768941|ref|ZP_08260368.1| dimethyladenosine transferase [Gemella sanguinis M325]
 gi|328836658|gb|EGF86316.1| dimethyladenosine transferase [Gemella sanguinis M325]
          Length = 286

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 16/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M         IL  +    KK +GQNFL+D NIL +I + +G  D + VIEIG G G+LT
Sbjct: 1   MIGTPKKTFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGINDKVGVIEIGPGIGSLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSP 118
           + +    A++VI  E D +  PIL +  + + N +EII +D LKVD +K           
Sbjct: 61  EAVAKR-AKRVISFEIDGRLLPILSETLADYSN-VEIINNDILKVDVDKIIEEKMSDCEK 118

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I ++ANLPY I T +L + I         +   ++ Q+EV  R+ A+  +  Y  L++L 
Sbjct: 119 IMVVANLPYYITTPILTHLIENTK---RIDGYVVMMQREVANRLNAKVGTKDYNSLTILL 175

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            + T    +F +   VF P+P V S V+  +              K  +  F +RRKTL 
Sbjct: 176 NYYTNVEYLFTVPKKVFVPAPNVESAVVKIMTKDEKEFEADSKFFKFVRSCFVQRRKTLL 235

Query: 239 QSLKRLGGENLLHQA-------GIETNLRAENLSIEDF 269
            +L    G++   +         I++  R+E LS+ +F
Sbjct: 236 NNLISSYGKDKKQELQNSCLDSEIDSTRRSETLSLREF 273


>gi|21241633|ref|NP_641215.1| dimethyladenosine transferase [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|294625753|ref|ZP_06704372.1| dimethyladenosine transferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664835|ref|ZP_06730156.1| dimethyladenosine transferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|27151571|sp|Q8PP25|RSMA_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21106994|gb|AAM35751.1| dimethyladenosine transferase [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|292599923|gb|EFF44041.1| dimethyladenosine transferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605391|gb|EFF48721.1| dimethyladenosine transferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 262

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 125/257 (48%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL      + VIE D+
Sbjct: 9   AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L + ++     L II  D L VDF    +  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTEAAAPI-GALRIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PK
Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182

Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +P                + +  FG+RRKTLR +L  +        A +  +
Sbjct: 183 VDSAVVRLVPRDPATVLINDRRRFADVVRAGFGQRRKTLRNALSAICEPAHFDAAQVRPD 242

Query: 259 LRAENLSIEDFCRITNI 275
            RAE L + DF R+ N+
Sbjct: 243 ARAEQLEVADFIRLANV 259


>gi|258452826|ref|ZP_05700821.1| dimethyladenosine transferase [Staphylococcus aureus A5948]
 gi|257859512|gb|EEV82365.1| dimethyladenosine transferase [Staphylococcus aureus A5948]
          Length = 297

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L 
Sbjct: 10  PSRTRALLDKYGFNLKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122
              A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++
Sbjct: 70  -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  YG LS++  + T
Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 287


>gi|189440314|ref|YP_001955395.1| dimethyladenosine transferase [Bifidobacterium longum DJO10A]
 gi|226729757|sp|B3DP38|RSMA_BIFLD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189428749|gb|ACD98897.1| Dimethyladenosine transferase for rRNA methylation [Bifidobacterium
           longum DJO10A]
          Length = 307

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 22/293 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++I   +G      V+E+G G G+LT  +L
Sbjct: 14  AADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAANHVMEVGPGLGSLTLAIL 73

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE--KFFNISSPIR 120
             GA  +  +E D      L     +   +  +RL ++  DAL V  E    F+  +   
Sbjct: 74  ETGA-TMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPENVPDFSDDASFT 132

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T +L   +        +  +    QKEV +R+ A+  S  YG  SV   W
Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMV---QKEVADRLAAKPGSKIYGTPSVKLAW 189

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL------------ESLKKITQE 228
              A  +  I  +VF+P+P V S ++ F  +    P               E + ++   
Sbjct: 190 YGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQRELVFRLIDA 249

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           AFG+RRKTL  +LK +        AGI+   R E L+I +F  +   +    D
Sbjct: 250 AFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESCGD 302


>gi|28199096|ref|NP_779410.1| dimethyladenosine transferase [Xylella fastidiosa Temecula1]
 gi|32129656|sp|Q87C85|RSMA_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|28057194|gb|AAO29059.1| dimethyladenosine transferase [Xylella fastidiosa Temecula1]
          Length = 265

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 121/259 (46%), Gaps = 10/259 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQ+FL+D   + +I  +        ++EIG G G +T  LL      +  IE D+
Sbjct: 10  AKKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 68

Query: 81  QFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138
                L   ++  P  +L+II  D L VD           +R++ NLPYNI + +LF+ +
Sbjct: 69  DLIAPL--TAAATPIGKLDIIHRDVLTVDLSILAKQGNKKLRLVGNLPYNISSPILFHVL 126

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV +R+ A   S  YGRLSV+     + T MF + P  F P 
Sbjct: 127 QQAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPP 183

Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S +   +P           +    I + AFG+RRKTLR SL  +        AGI 
Sbjct: 184 PKVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIR 243

Query: 257 TNLRAENLSIEDFCRITNI 275
           TN RAE L + +F  + N 
Sbjct: 244 TNARAEQLEVTEFIALANA 262


>gi|295398232|ref|ZP_06808278.1| dimethyladenosine transferase [Aerococcus viridans ATCC 11563]
 gi|294973582|gb|EFG49363.1| dimethyladenosine transferase [Aerococcus viridans ATCC 11563]
          Length = 301

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 134/280 (47%), Gaps = 19/280 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  + +  KK +GQNFL +  IL+ + + +G       IEIG G G LT+ L  + A+
Sbjct: 19  AILKKFNLDAKKSLGQNFLTEPQILQHMVDVAGVDKDTNAIEIGPGIGALTEFLA-INAK 77

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD---FEKFFNISSPIRIIANLPYN 128
           +V+  E DQ+  P+L D  S + N + I   D L+ D       F  +    ++ANLPY 
Sbjct: 78  EVLAFEIDQRLLPVLADTLSDYDN-VTIKHQDILEADLNATMAAFPPAERTVVVANLPYY 136

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++FN + A      ++   L+ QKEV ER+TA   +  YG LSV   +   A + F
Sbjct: 137 ITTPIIFNLLEASFH---FDQFILMMQKEVAERLTAAPGTKAYGSLSVAIQYYCDAEIAF 193

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            +   VF P P V S ++       P            + + +F +RRKT+  +L+   G
Sbjct: 194 TVPRTVFNPQPNVDSAILALNKLDKPRITVENEAFFFHLVRSSFKQRRKTIWNNLRAAFG 253

Query: 247 EN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277
           +           L  AG++   RAE L+I DF  + + L 
Sbjct: 254 KEEAVVEKMVKALEIAGVDQKQRAETLTIADFGHLADALY 293


>gi|325981519|ref|YP_004293921.1| dimethyladenosine transferase [Nitrosomonas sp. AL212]
 gi|325531038|gb|ADZ25759.1| dimethyladenosine transferase [Nitrosomonas sp. AL212]
          Length = 254

 Score =  268 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 95/262 (36%), Positives = 129/262 (49%), Gaps = 11/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  P+K  GQNFL D  I+ KI           +IEIG G G LT+ LL      + V+E
Sbjct: 2   RHNPRKRFGQNFLFDQYIINKIITEFYPRKDDRIIEIGPGLGALTRPLL-QAIDHLHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     LK   S     L I   DAL+ DF    N    +RII NLPYNI T LLF+ 
Sbjct: 61  IDRDIVDKLKIEFSH--ENLTIHAADALQFDFSALGNQ---MRIIGNLPYNISTPLLFHL 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                +      +  + QKEV ER+     +  YGRLSV+  +R     +FD+    F P
Sbjct: 116 ---SQFSEHILDMHFMLQKEVVERMVGVPGTSDYGRLSVMLQYRFDMEYVFDVPAESFRP 172

Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++  IP   P+   ++     +I   AF +RRKTLR +L++           I
Sbjct: 173 QPKVESAIVRMIPRPIPLSMTVDETLFSQIVLAAFSQRRKTLRNALQQYLTVEDFSALNI 232

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           ++ LRAENL +E F  IT+ LT
Sbjct: 233 DSGLRAENLPVEKFVAITHFLT 254


>gi|302332206|gb|ADL22399.1| dimethyladenosine transferase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 297

 Score =  268 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 144/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L 
Sbjct: 10  PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122
              A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++
Sbjct: 70  -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  YG LS++  + T
Sbjct: 128 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 185 ETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 244

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L QAGI++  R E LSI+DF ++  
Sbjct: 245 YQNYFKDGKQHKEVILQWLEQAGIDSRRRGETLSIQDFAKLYE 287


>gi|315651949|ref|ZP_07904951.1| dimethyladenosine transferase [Eubacterium saburreum DSM 3986]
 gi|315485778|gb|EFU76158.1| dimethyladenosine transferase [Eubacterium saburreum DSM 3986]
          Length = 297

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 96/296 (32%), Positives = 149/296 (50%), Gaps = 24/296 (8%)

Query: 1   MT-MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           MT + N ++++  I+  Y    +K  GQNFL+D ++L KI   SG       IEIG G G
Sbjct: 8   MTKIANPANTI-DIIKKYDFNFQKKFGQNFLIDTHVLDKICSESGLGKNDLAIEIGPGIG 66

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--- 116
            LTQ L  + A+ V+ +E D+   PIL D    + N  E+I  D LKVD EK  +     
Sbjct: 67  ALTQYLA-ITAKAVVAVEIDKNLLPILGDTLKDYKNT-ELINADFLKVDLEKLIDECIQK 124

Query: 117 ----SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
                 IRIIANLPY I T ++ N + + T     +S+T++ QKEV +R+ A   S +YG
Sbjct: 125 YGEFDNIRIIANLPYYITTPIIMNVLESHTH---IDSITVMIQKEVADRMQAAPGSKNYG 181

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAF 230
            LS+   + +   ++  +  + F P PKV S+VI    + +        + + +I +  F
Sbjct: 182 ALSLAVQYYSDPYVVAFVPQNCFIPRPKVGSSVIRLDIYKDKPIKTVNEKLMFQIIRAGF 241

Query: 231 GKRRKTLRQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            +RRKTL  SL         +    + L   G    +R E LS+++F ++   L +
Sbjct: 242 NQRRKTLVNSLINFEGLQFSKNKIIHALSLLGKSEKIRGEALSLDEFAQLAEYLQE 297


>gi|317402409|gb|EFV82981.1| dimethyladenosine transferase [Achromobacter xylosoxidans C54]
          Length = 263

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 132/263 (50%), Gaps = 11/263 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +   +K  GQNFL D ++++ I  +     G TV+EIG G   LT+ LL      +  +E
Sbjct: 3   QHQARKRFGQNFLTDESVVESIVRAVNPARGDTVVEIGPGLSALTRPLLERL-DHLTAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+    +   RL +++ DAL VDF +F    + +R++ NLPYNI + LLF+ 
Sbjct: 62  IDRDLAARLRKQFEE--GRLTVVEADALTVDFSQF---GAGLRVVGNLPYNISSPLLFHL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++   W         + Q+EV +R+ AQ  S  + RLSV+   R +   +FD+ P  F P
Sbjct: 117 MA---WADHVRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDP 173

Query: 198 SPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++  +P       P    + + +   AF +RRK LR+ L     +       I
Sbjct: 174 PPKVVSAIVRMVPLPAERLRPVSARAFETVVARAFSQRRKMLRRVLADWAPQVPWEALDI 233

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
               RAE++S++ +  +++ L +
Sbjct: 234 APTARAEDISVDRYIHLSDALVE 256


>gi|299067921|emb|CBJ39135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Ralstonia solanacearum CMR15]
          Length = 281

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 11/269 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+      + V
Sbjct: 9   HQGHQARKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVP-TLQV 67

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+       ++L +   DAL  DF         +RI+ NLPYNI + LLF
Sbjct: 68  VELDRDLVARLQRRFG---DKLIVHAGDALAFDFGTLHVPGRSLRIVGNLPYNISSPLLF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +         + QKEV ER+ A   S  + RLSV+   R    ++ ++ P  F
Sbjct: 125 HL---SAFADRVRDQHFMLQKEVVERMVAAPGSKAFSRLSVMLQVRYYMELVLEVPPGSF 181

Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            P PKV S V+  IP         P  + +L  +   AF +RRK LR +L  L       
Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFD 241

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280
             G +   RAE + + +F  + N L  ++
Sbjct: 242 ALGFDLGRRAEEVPVAEFVAVANALPADR 270


>gi|113866543|ref|YP_725032.1| dimethyladenosine transferase [Ralstonia eutropha H16]
 gi|122947140|sp|Q0KEA7|RSMA_RALEH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|113525319|emb|CAJ91664.1| dimethyladenosine transferase (rRNA methylation) [Ralstonia
           eutropha H16]
          Length = 280

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 125/270 (46%), Gaps = 16/270 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H   + +K  GQNFL+D  I+  I  +        ++EIG G G LT  LL     ++ V
Sbjct: 6   HQGHVARKRFGQNFLVDDTIIHGIVNAISPQADDVLVEIGPGLGALTDPLLERIP-QMQV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+     +  RL++   DAL  DF+K      P+RI+ NLPYNI + LLF
Sbjct: 65  VELDRDLVERLRRR---YGERLQVHAGDALAFDFDKLAVPGRPLRIVGNLPYNISSPLLF 121

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +    +         + QKEV ER+ A+  S  +GRLS++   R     + D+ P  F
Sbjct: 122 HLM---DFADHVRDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHVLDVPPGAF 178

Query: 196 FPSPKVTSTVIHFIP---------HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            P PKV S V+  IP               C +  L  +   AF +RRK LR +L  L  
Sbjct: 179 NPPPKVDSAVVRMIPWPRHSDGRLRSPHADCDITVLGDVVTAAFSQRRKVLRNTLSFLRD 238

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +      G +   RAE + + ++  +   L
Sbjct: 239 QVDFDAMGFDLGRRAEEVPVGEYVELARRL 268


>gi|17545237|ref|NP_518639.1| dimethyladenosine transferase [Ralstonia solanacearum GMI1000]
 gi|27151581|sp|Q8Y219|RSMA_RALSO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|17427528|emb|CAD14046.1| probable dimethyladenosine transferase
           (s-adenosylmethionine-6-n',n'-adenosyl(rrna)
           dimethyltransferase) (16s rrna dimethylase) (high level
           kasugamycin resistance protein ksga) (kasugamycin
           dimethyltransferase) [Ralstonia solanacearum GMI1000]
          Length = 281

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 118/265 (44%), Gaps = 11/265 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+      + V
Sbjct: 9   HQGHQARKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVP-TLQV 67

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+       ++L +   DAL  DF         +RI+ NLPYNI + LLF
Sbjct: 68  VELDRDLVARLQRRFG---DKLIVHAGDALAFDFGTLHVPGRSLRIVGNLPYNISSPLLF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +         + QKEV +R+ A   S  + RLSV+   R    ++ ++ P  F
Sbjct: 125 HL---SAFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYMELVLEVPPGSF 181

Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            P PKV S V+  IP         P  + +L  +   AF +RRK LR +L  L       
Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFD 241

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
             G +   RAE + + DF  + N L
Sbjct: 242 ALGFDLGRRAEEVPVADFVAVANAL 266


>gi|71065521|ref|YP_264248.1| dimethyladenosine transferase [Psychrobacter arcticus 273-4]
 gi|119365049|sp|Q4FT44|RSMA_PSYA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71038506|gb|AAZ18814.1| dimethyladenosine transferase [Psychrobacter arcticus 273-4]
          Length = 287

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 140/284 (49%), Gaps = 14/284 (4%)

Query: 1   MTMNN-KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M+  +  + S+   L   K  P+K  GQNFL D +++++I ES        +IEIG G G
Sbjct: 1   MSKISFDAQSISNSLRAAKHQPRKRFGQNFLHDRSVIREIVESIRLERDDNLIEIGPGMG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFF-NISS 117
            LT+ LL      + V+E D+     L+  I +       II+D+A+ VD+ + +     
Sbjct: 61  ALTEPLLAE-VDAMTVVELDRDLADSLRIRIGANSHPNFTIIKDNAMHVDYRELYSEERG 119

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            +R++ NLPYNI T +LF+ +S        E +  + QKEV ERITA   S  YGRLSV+
Sbjct: 120 KLRVVGNLPYNISTPILFHLLSYAD---VIEDMHFMLQKEVVERITADVGSKTYGRLSVI 176

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKK-ITQEAFGKRRK 235
             +      +  +    F P PKVTS V    PH + P+    E     + +E F  RRK
Sbjct: 177 MQYHCHTDYLLTVPRGAFNPPPKVTSAVFRLTPHIIKPVVAEDEEYFALVVRETFNHRRK 236

Query: 236 TLRQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274
           TLR   K+        E+      I+   R E L+++DF  ++N
Sbjct: 237 TLRAIFKKSTLLPTLSEDDFAACAIDPQARPETLNVKDFVNLSN 280


>gi|261377894|ref|ZP_05982467.1| dimethyladenosine transferase [Neisseria cinerea ATCC 14685]
 gi|269145748|gb|EEZ72166.1| dimethyladenosine transferase [Neisseria cinerea ATCC 14685]
          Length = 261

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 130/266 (48%), Gaps = 11/266 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ VIE 
Sbjct: 4   HKARKRFGQNFLQDTRIINDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVATPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNILTDNQDI 282
              RAE+++ E +  ++N LT   D 
Sbjct: 235 PQDRAEHVAPEKYVALSNYLTGKADA 260


>gi|317495931|ref|ZP_07954294.1| dimethyladenosine transferase [Gemella moribillum M424]
 gi|316914108|gb|EFV35591.1| dimethyladenosine transferase [Gemella moribillum M424]
          Length = 286

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 133/278 (47%), Gaps = 16/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M         IL  +    KK +GQNFL+D NIL +I + +G  + + VIEIG G G+LT
Sbjct: 1   MIGTPKKTFEILKKHGFTFKKSLGQNFLIDANILNRIIDGAGINETVGVIEIGPGIGSLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSP 118
           + +    A+KVI  E D +  PIL +  + + N +EII +D LKVD +            
Sbjct: 61  EAIAK-KAKKVISFEIDGRLLPILSETLADY-NNVEIINNDILKVDVDNIIAEKMSDCDK 118

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I ++ANLPY I T +L + I         +   ++ Q+EV  R+ A+  +  Y  L++L 
Sbjct: 119 IMVVANLPYYITTPILTHLIENTEK---IDGYVVMMQREVANRLNAKVGTKDYNSLTILL 175

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            + T    +F +   VF P+P V S V+  +          +   K  +  F +RRKTL 
Sbjct: 176 NYYTDVEYLFTVPKKVFVPAPNVESAVVKIMTKEKKEFEVDQKFFKFVRSCFVQRRKTLL 235

Query: 239 QSLKRLGGENLLHQA-------GIETNLRAENLSIEDF 269
            +L    G++             IE   R+E L++ +F
Sbjct: 236 NNLISSYGKDKKQDLQASCFDSEIEATRRSETLTLTEF 273


>gi|78485998|ref|YP_391923.1| dimethyladenosine transferase [Thiomicrospira crunogena XCL-2]
 gi|119365859|sp|Q31F24|RSMA_THICR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78364284|gb|ABB42249.1| dimethyladenosine transferase [Thiomicrospira crunogena XCL-2]
          Length = 266

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/272 (29%), Positives = 136/272 (50%), Gaps = 12/272 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++ ++   KK  GQNFL +  I+++I  +        ++EIG G   LT  LL +  +K+
Sbjct: 1   MAKHQH--KKRFGQNFLNNDRIIQQIVAAIAPKPDQHLVEIGPGEAALTGPLLDI-VKKL 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIG 130
            +IE D      L    S +P    +   DAL  D+ +       +  +RI+ NLPYNI 
Sbjct: 58  DIIEIDNDLIGPLTKRFSHNPA-FHLHHTDALLFDYSQLLEAETETPSLRIVGNLPYNIS 116

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + LLF+ +       + + +  + QKEV ERITAQ     YGRLSV+  +  +   +  +
Sbjct: 117 SPLLFHLLKYAR---YIQDMHFMLQKEVVERITAQPGVKAYGRLSVMIQYTCETEYLLTV 173

Query: 191 SPHVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            P  F P PKV S ++   P           +   K+ ++AF ++RKTLR +LK    + 
Sbjct: 174 GPENFTPPPKVDSAIVRLRPFEKRPFQAIDDKDFAKLVKQAFSQKRKTLRNNLKGFLNDE 233

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +   G++ ++RAE + +E F  ++N+   ++
Sbjct: 234 QIEACGLDPSVRAEKVPVEAFVLLSNLYHKDK 265


>gi|331002316|ref|ZP_08325834.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330410132|gb|EGG89566.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 292

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/297 (33%), Positives = 152/297 (51%), Gaps = 24/297 (8%)

Query: 1   MT-MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           MT + N ++++  I+  Y    +K  GQNFL+D ++L KI  +SG       IEIG G G
Sbjct: 1   MTNIANPANTI-EIIKKYDFSFQKKFGQNFLIDTHVLDKICLASGLGGNDLAIEIGPGIG 59

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--- 116
           +LTQ L    A+ V+ IE D+   PIL +  + + N + II  D LK+D +K        
Sbjct: 60  SLTQYLANT-AKAVVAIEIDKNLLPILNETLANYKN-ISIINADFLKIDLKKLIEDCRQK 117

Query: 117 ----SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
                 IRI+ANLPY I T ++ N + +       +S+T++ QKEV +R+ A      YG
Sbjct: 118 YGEFENIRIVANLPYYITTPIIMNVLESHIH---IDSITVMIQKEVADRMQALPGGKDYG 174

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESL-KKITQEAF 230
            LS+   + +   ++  + P+ F P PK+ S+VI   I    PI    E L  +I +  F
Sbjct: 175 ALSLAVQYYSDPYVVAFVPPNCFIPRPKIGSSVIRLDIYKEKPIKADNEKLMFQIIRAGF 234

Query: 231 GKRRKTLRQSLKRLG-----GENLLHQ---AGIETNLRAENLSIEDFCRITNILTDN 279
            +RRKTL  S+   G      E ++H     G    +R E LS+E+F ++   L D+
Sbjct: 235 NQRRKTLVNSIGNFGEFNFSKEKIIHALSLLGKSEKIRGEALSLEEFAKLAGYLKDS 291


>gi|300692471|ref|YP_003753466.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Ralstonia solanacearum PSI07]
 gi|299079531|emb|CBJ52209.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
           [Ralstonia solanacearum PSI07]
          Length = 281

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 119/269 (44%), Gaps = 11/269 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+      + V
Sbjct: 9   HQGHQARKRFGQNFLVDEGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVP-TLQV 67

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+       ++L +   DAL  DF         +RI+ NLPYNI + LLF
Sbjct: 68  VELDRDLVVRLQRRFG---DKLIVHAGDALAFDFGALHVPGRSLRIVGNLPYNISSPLLF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +         + QKEV +R+ A   S  + RLSV+   R     + D+ P  F
Sbjct: 125 HL---SAFADRIRDQHFMLQKEVVDRMVAVPGSKAFSRLSVMLQVRYYMEPVLDVPPGSF 181

Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            P PKV S V+  IP         P  + +L  +   AF +RRK LR +L  L       
Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYAPVDMRALGTVVTLAFSQRRKVLRNTLGSLREVIDFD 241

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280
             G +   RAE + + DF  + N L  ++
Sbjct: 242 ALGFDLGRRAEEVPVADFVAVANALPADR 270


>gi|169335103|ref|ZP_02862296.1| hypothetical protein ANASTE_01510 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257841|gb|EDS71807.1| hypothetical protein ANASTE_01510 [Anaerofustis stercorihominis DSM
           17244]
          Length = 287

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/290 (31%), Positives = 148/290 (51%), Gaps = 18/290 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   NK +++  I + Y    KK +GQNFL D NI+ KI +S    D   V+E+G G G+
Sbjct: 1   MKATNK-NTISEITNKYDFRFKKDLGQNFLTDENIVLKIVDSLELTDDEVVLEVGPGMGS 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----IS 116
           LTQ L    A KV  +E D +   +L++  S++ N +EII  D LK D  +        +
Sbjct: 60  LTQKLAER-AYKVYAVEIDTRAVNMLEETLSEY-NNIEIINKDILKTDLREILEDAIKEN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             I+ I+NLPY I + +L   +        +E++ ++ QKEV  R+ A+ N+  Y   ++
Sbjct: 118 RKIKFISNLPYYITSPILMKVLEDKV---MFENIVVMLQKEVATRLNAKVNTKDYSSFTI 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRR 234
              +  +   +F++   VF P PKV STV+  +P           +   K+ + AF  RR
Sbjct: 175 AVDYYAEVERLFNVPKTVFVPMPKVDSTVLRVVPRKESKVDVDNQDMFFKVVKAAFMNRR 234

Query: 235 KTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           K +  SL           +N L  +G++  +RAEN++IE F +++N + +
Sbjct: 235 KMVFNSLANGLAVNKDLLKNALLNSGLDEKVRAENITIEQFAKLSNEINN 284


>gi|293399847|ref|ZP_06643993.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306247|gb|EFE47490.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 285

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 144/283 (50%), Gaps = 14/283 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL  + +  KK  GQNFL + ++++KIA S+   D   V EIG G G LTQ L 
Sbjct: 8   PSRTKEILETHDLFAKKNYGQNFLTEPSVVEKIARSAIVSDHCVVFEIGPGIGALTQYLC 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRII 122
              A++V+  E D++   +L D  S++ N + ++  D L +D  ++ N        + I 
Sbjct: 68  EY-AKEVVCFEIDERLPHVLADTLSEYTN-VSVVLQDFLTIDLREWVNRYREKGMDVVIA 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +LF    ++       ++T++ QKEV +R  A+ N+  Y  LS++T +R 
Sbjct: 126 ANLPYYITTPILFKIFESNA---DIAAITVMMQKEVADRFHAKVNTKEYNALSIITQYRC 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
               +  +  +VF P P V S V+ F    +      ES   + +  F +RRKT+  + +
Sbjct: 183 DVRAVMKVPKNVFHPKPNVDSAVLQFTFRKHYANLKEESFFAMVKACFKQRRKTILNNFQ 242

Query: 243 RLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                    +  L +A I+   RAE+L++++F  +  ++ D++
Sbjct: 243 EYCSDKETAKAYLEKADIDAKRRAESLTLDEFLHLYEVMQDDR 285


>gi|325922418|ref|ZP_08184187.1| dimethyladenosine transferase [Xanthomonas gardneri ATCC 19865]
 gi|325547115|gb|EGD18200.1| dimethyladenosine transferase [Xanthomonas gardneri ATCC 19865]
          Length = 262

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/257 (33%), Positives = 125/257 (48%), Gaps = 8/257 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL      + VIE D+
Sbjct: 9   AKKSLGQHFLADRYYIDRIVQAVAPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L D ++     L II  D L VDF    N  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTDAAAPI-GALSIIHRDVLSVDFTALAN-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  + QKEV +R+ A   S  YGRLSV+     + T +F + P  F P PK
Sbjct: 126 AGA---VADMHFMLQKEVVDRMAAGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPK 182

Query: 201 VTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+  +P                + +  FG+RRKTLR +L  +        A +  +
Sbjct: 183 VDSAVVRLVPRDPATVLIKDRRRFADVVRAGFGQRRKTLRNALSEVCEPAHFEAAQVRPD 242

Query: 259 LRAENLSIEDFCRITNI 275
            RAE L + DF R+ N+
Sbjct: 243 ARAEQLEVADFIRLANV 259


>gi|323438725|gb|EGA96465.1| dimethyladenosine transferase [Staphylococcus aureus O11]
 gi|323442063|gb|EGA99698.1| dimethyladenosine transferase [Staphylococcus aureus O46]
          Length = 303

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 20/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               + +L  Y    KK +GQNFL+D+NI+  I ++S       VIEIG G G+LT+ L 
Sbjct: 16  PSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLA 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRII 122
              A++V+  E DQ+  P+L D  S + N + +I +D LK +     E        I ++
Sbjct: 76  -RHAKRVLAFEIDQRLIPVLNDTLSPYDN-VTVINEDILKANIKEAVENHLQDCEKIMVV 133

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +L N +  D      +   ++ QKEVGER+ A+  S  YG LS++  + T
Sbjct: 134 ANLPYYITTPILLNLMQQDIP---IDGYVVMMQKEVGERLNAEVGSKAYGSLSIVVQYYT 190

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           + + +  +   VF P P V S V+  +    P+      E+  K+ + AF +RRKT+  +
Sbjct: 191 ETSKVLTVPKSVFMPPPNVDSIVVKQMQRTEPLVTVDNEEAFFKLAKAAFAQRRKTINNN 250

Query: 241 LKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITN 274
            +    +           L QAGI+   R E LSI+DF ++  
Sbjct: 251 YQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYE 293


>gi|86134822|ref|ZP_01053404.1| ribosomal RNA adenine dimethylase [Polaribacter sp. MED152]
 gi|85821685|gb|EAQ42832.1| ribosomal RNA adenine dimethylase [Polaribacter sp. MED152]
          Length = 267

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/269 (34%), Positives = 139/269 (51%), Gaps = 14/269 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D +I K IA++        V+EIG G G LT+ LL     K  V+E 
Sbjct: 3   VKAKKHLGQHFLTDESIAKDIADALTEEGYNHVLEIGPGMGVLTKYLLQKKP-KTTVLEL 61

Query: 79  DQQFFPILKDIS-------SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D++    LK++        +   +  +II+ D LK D +  FN    + II N PYNI T
Sbjct: 62  DRESVSYLKEVFPIEHLNLNTTSDNFQIIEGDFLKKDLQTLFN-KEQVAIIGNFPYNIST 120

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +++F  I    + P +  +   FQKEV +RI  ++ S  YG LSVLT        +F + 
Sbjct: 121 QIVFKAIENREFVPEFAGM---FQKEVAKRIAEKEGSKVYGILSVLTQAFFDVEYLFTVP 177

Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           P VF P PKV S VI  I   +  +P   +   ++ + AF +RRK LR SLK     + L
Sbjct: 178 PTVFNPPPKVDSGVIRLIRKKDYSLPVDEKLFFRVVKTAFNQRRKMLRSSLKSFKLSDSL 237

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
            +  I    R E LS+++F  +T  + +N
Sbjct: 238 KEDPI-FARRPEQLSVQEFISLTQKIANN 265


>gi|302390854|ref|YP_003826674.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501]
 gi|302202931|gb|ADL11609.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501]
          Length = 290

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/286 (34%), Positives = 144/286 (50%), Gaps = 18/286 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              + + IL    I  KK +GQNFL+D NI+ KI  S+       VIEIG G G+LTQ L
Sbjct: 7   NPSTTREILEENGIQLKKSLGQNFLVDRNIIDKIIVSADLTSYDHVIEIGPGIGSLTQRL 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIA 123
              GA+ V  IE D++F  IL++  S + N +  IQ DAL+ DFE+         I+++A
Sbjct: 67  AE-GAKAVWAIELDERFIKILEENLSNY-NNVNFIQADALEYDFEQLLTKLSGESIKVVA 124

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS-PHYGRLSVLTGWRT 182
           NLPY I T ++   +        +E + ++ QKEV ERI A       YG LS+   + +
Sbjct: 125 NLPYYITTPIIMRLLEEKLP---FERVVVMVQKEVAERIVATPEDGKKYGSLSLAVRYYS 181

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           +  +   +   VF P PKV S ++       P       E L K+ Q AF +RRKT+R S
Sbjct: 182 QPEITGTVPRTVFMPQPKVDSAIVKMEIRDKPPVEVKDEELLFKVIQAAFQQRRKTIRNS 241

Query: 241 --------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                   LKR   +  L +  IE+  R E L +E F  ++N + D
Sbjct: 242 LSKAANLDLKRDLVDQALDKVDIESRRRGEKLDLERFTALSNSIFD 287


>gi|291542930|emb|CBL16040.1| dimethyladenosine transferase [Ruminococcus bromii L2-63]
          Length = 284

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 150/289 (51%), Gaps = 16/289 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +   ++K ILS +     K +GQNFL++ ++  ++AE SG+ +G+ VIE+G G G 
Sbjct: 1   MKKLSDIGTIKDILSRHGFTFSKSLGQNFLINPSVCPRMAELSGAGEGVGVIEVGPGIGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           LT  L +L A KV+ +E D++  P+L++  S++ N ++++ DD LK+D  K         
Sbjct: 61  LTTELCSL-ADKVVAVELDKRLLPVLEETLSEYDN-VKVVNDDILKIDLHKLIEEEFQGM 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            + + ANLPY I + ++   +          ++T++ QKE  +RI A+  S   G ++V 
Sbjct: 119 DVVVCANLPYYITSPVIMKLLEDRLP---ICAITVMVQKEAAQRICAEVGSRASGAVTVS 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRK 235
             +  +  M+F +S   F P+PKV S V+       P       +   K+ + AF +RRK
Sbjct: 176 VNYYAEPEMLFSVSAGSFMPAPKVDSAVLRLNILKEPPVKVDDEKKFFKVVKAAFSQRRK 235

Query: 236 TLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           TL  SL       +     +L  + +  N RAE L +EDF  I N L D
Sbjct: 236 TLSNSLASGLSLPKAEVNAILDNSSVPLNARAEQLKLEDFANIANNLGD 284


>gi|27151609|sp|Q9PBJ6|RSMA_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 265

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 120/258 (46%), Gaps = 8/258 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQ+FL+D   + +I  +        ++EIG G G +T  LL      +  IE D+
Sbjct: 10  AKKAFGQHFLVDRYYIDRIIHAITPQPNDHIVEIGPGQGAITLPLLK-CCGSLTAIELDR 68

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWIS 139
                L   ++    +L+II  D L VD           +R++ NLPYNI + +LF+ + 
Sbjct: 69  DLIAPLTAAATPL-GKLDIIHRDVLTVDLSILAKPGNKKLRLVGNLPYNISSPILFHVLQ 127

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                     +  + QKEV +R+ A   S  YGRLSV+     + T MF + P  F P P
Sbjct: 128 QAA---IIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPPP 184

Query: 200 KVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S +   +P           +    I + AFG+RRKTLR SL  +        AGI T
Sbjct: 185 KVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIRT 244

Query: 258 NLRAENLSIEDFCRITNI 275
           N RAE L + +F  + N 
Sbjct: 245 NARAEQLEVTEFIALANA 262


>gi|325206459|gb|ADZ01912.1| dimethyladenosine transferase [Neisseria meningitidis M04-240196]
          Length = 259

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 128/261 (49%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F NI    +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|154498148|ref|ZP_02036526.1| hypothetical protein BACCAP_02129 [Bacteroides capillosus ATCC
           29799]
 gi|150273138|gb|EDN00295.1| hypothetical protein BACCAP_02129 [Bacteroides capillosus ATCC
           29799]
          Length = 290

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 143/291 (49%), Gaps = 19/291 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N  + +K +L  +     K MGQNFL++ ++ + IA +SG+     V+EIG G G 
Sbjct: 1   MDLCN-VNDIKALLGRHGFRFSKSMGQNFLIEDHVPRDIAAASGADKDCGVLEIGPGIGP 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--- 117
           LT  L    A +V+ +E D+   P+L +  +   N +EI+  D +K+D            
Sbjct: 60  LTVRLAER-AGRVVSVELDKALLPVLAETLAGRDN-VEIVPGDIMKLDIPALVAEKMDGL 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
                ANLPYNI T +L   I A      ++++T++ Q+EV  RI A   S  YG  SV 
Sbjct: 118 KPLACANLPYNITTPVLTALIEAG----CFQAITVMIQREVALRICAAPGSGDYGAFSVY 173

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKT 236
             + T   ++FD+ P  F P+PKVTS+VI  +P   P      +   ++ + AF +RRKT
Sbjct: 174 CQYHTTPELLFDVPPECFIPAPKVTSSVIRLVPRPAPEEVKDEKQFFRLVRAAFAQRRKT 233

Query: 237 LRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L  +L    G         + +   G+  ++R E L I +F  + + L   
Sbjct: 234 LLNALSSAYGSQLSKDELRDAIAACGLPADVRGERLGIPEFAALADALAQR 284


>gi|328883016|emb|CCA56255.1| Dimethyladenosine transferase [Streptomyces venezuelae ATCC 10712]
          Length = 291

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 18/280 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL
Sbjct: 16  PADIRELAAALGVRPTKQKGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 75

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V  +E D      L            +R  ++  DA+ V   +      P  ++
Sbjct: 76  E-AADRVTAVEIDDVLAAALPSTIAARMPARADRFALVHSDAMHV---EELPGPPPTALV 131

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A+  +  YG  SV   W  
Sbjct: 132 ANLPYNVAVPVLLHMLER---FPSIERTLVMVQAEVADRLAAKPGNKVYGVPSVKANWYA 188

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +      I  +VF+P+P V S ++  +    P+      + +  +   AF +RRKTLR +
Sbjct: 189 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPLATTATRQEVFAVVDAAFAQRRKTLRAA 248

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           L    G     E  L +AGI    R E L++E+F RI   
Sbjct: 249 LATWAGSPAAAEEALVKAGISPQARGEGLTVEEFARIAEA 288


>gi|315604977|ref|ZP_07880031.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313256|gb|EFU61319.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 329

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 142/288 (49%), Gaps = 21/288 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ I     I P K +GQNF+ D   +++I  +     G  V+E+G G G+LT  LL +
Sbjct: 37  EVRAISEALGIRPTKVLGQNFVHDAGTVRRIVAAGDVRAGDEVVEVGPGLGSLTLALLEV 96

Query: 69  GARKVIVIEKDQQFFPILKD----ISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRII 122
           GAR V  +E D      L +       +   R  ++  DA ++   + F  +   P +++
Sbjct: 97  GAR-VRAVEIDPPLASALPETIRSRMGEASGRFHVVTMDATEITGNEDFGVDWPPPTKLV 155

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L N + A    P  E++ ++ Q EV +R+ A+  S  YG  SV   W  
Sbjct: 156 ANLPYNVAVPVLLNMLDA---FPTIEAVVVMVQAEVADRLAAEPGSRTYGVPSVKASWYG 212

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238
           +      I   VF+P P V S ++       P P   E+L++    +T  AFG+RRKTLR
Sbjct: 213 EVQRAGTIGRTVFWPVPGVDSALVRLTRL--PSPRGDEALRRATFEVTDVAFGQRRKTLR 270

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            +LK   G     E LL  AGI+   R E LSI++F  +   + + ++
Sbjct: 271 AALKNWAGGPEASEALLCDAGIDPTRRGETLSIDEFVALGRAVLEARE 318


>gi|325203784|gb|ADY99237.1| dimethyladenosine transferase [Neisseria meningitidis M01-240355]
          Length = 259

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 127/261 (48%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV +R+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  +  L  AGI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAAGIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|160914684|ref|ZP_02076898.1| hypothetical protein EUBDOL_00691 [Eubacterium dolichum DSM 3991]
 gi|158433224|gb|EDP11513.1| hypothetical protein EUBDOL_00691 [Eubacterium dolichum DSM 3991]
          Length = 285

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 14/281 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K IL+ + +  KK  GQNFL++ ++++KIA S+         EIG G G LTQ L 
Sbjct: 8   PSRTKEILAKHDVFAKKNYGQNFLIEPSVVEKIARSAIGEKKCVAFEIGPGIGALTQYLC 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRII 122
              A+KV+  E D++   +LKD   ++ N  EI+  D L +D     EK+      + + 
Sbjct: 68  EY-AQKVVSFEIDERLPEVLKDTLQEYDN-FEIVLQDFLTIDLNAWVEKYRQEGYEVVVA 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T +LF    A+       S+T++ QKEV +R  A+ N+  Y  LSV+T +R 
Sbjct: 126 ANLPYYITTPILFKIFEAEAN---ISSITVMMQKEVADRFYAKVNTKDYNALSVITQYRC 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           + + +  +  +VF P P V S V+ F           E   ++ +  F +RRKT+  +  
Sbjct: 183 EVSPVMKVPKNVFMPKPNVDSAVLQFRFKQRNENIEEEVFFEMVKACFKQRRKTMLNNFG 242

Query: 243 -----RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                +     LL QA I+   R E++S+ +F  +  ++ +
Sbjct: 243 EYLQDKAKAMALLEQANIDPKRRGESVSLAEFLVLYEVMRN 283


>gi|22122569|ref|NP_666186.1| dimethyladenosine transferase 1, mitochondrial [Mus musculus]
 gi|81878249|sp|Q8JZM0|TFB1M_MOUSE RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|21039484|gb|AAM33651.1|AF508971_1 transcription factor b1 [Mus musculus]
 gi|21410720|gb|AAH32930.1| Transcription factor B1, mitochondrial [Mus musculus]
 gi|148669697|gb|EDL01644.1| transcription factor B1, mitochondrial [Mus musculus]
          Length = 345

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  + +   K + QNFLLDL +  KI   +GSL  + V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPGNIRRQWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+         +      +TL FQKEV ER+ A   S  +
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISLKDGPFVYGRTKMTLTFQKEVAERLVATTGSKQH 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++  +      +F I    F P PKV   V+H  P + P I    + ++K+ Q AF
Sbjct: 194 SRLSIMAQYLCNVEHLFTIPGKAFVPKPKVDVGVVHLTPLIEPKIKQPFKLVEKVVQNAF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L  E         LL  A I+  LR  +LS+  F  + ++     D
Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCD 312


>gi|300362465|ref|ZP_07058641.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03]
 gi|300353456|gb|EFJ69328.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03]
          Length = 296

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/296 (32%), Positives = 154/296 (52%), Gaps = 21/296 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +   + + I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG G G+
Sbjct: 5   MPIASPVRT-QAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQPGDQVIEIGPGIGS 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK--- 111
           LT+ LL  GA KV+  E DQ    ILK+         +  NR +++  D LK +F K   
Sbjct: 64  LTEQLLLAGA-KVLAYEVDQDLPEILKNELPQKVAGEELSNRFKLVMKDVLKANFTKDSD 122

Query: 112 -FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
            F +++  ++I+ANLPY I T ++FN I ++     + SLTL+ QKEV ER+ A+  +  
Sbjct: 123 GFLDLNKSVKIVANLPYYITTPIIFNLIKSNLA---FSSLTLMMQKEVAERLVAKPKTKE 179

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEA 229
           YG L++    R    +  ++    F P PKV S V+   P               + +  
Sbjct: 180 YGPLTIAVQSRMNVKLAEEVKSTSFMPRPKVDSAVVVLTPLTEKPDIDDYSFFDHVVKMC 239

Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           F +RRKTL  +LK L       E +++  G++  +R E L++  F  + ++L D Q
Sbjct: 240 FAQRRKTLANNLKSLVKDRDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQQ 295


>gi|83749340|ref|ZP_00946337.1| Dimethyladenosine transferase [Ralstonia solanacearum UW551]
 gi|83724018|gb|EAP71199.1| Dimethyladenosine transferase [Ralstonia solanacearum UW551]
          Length = 281

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 117/265 (44%), Gaps = 11/265 (4%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL+D  ++  I  +        ++EIG G G LT  L+      + V
Sbjct: 9   HQGHQARKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVP-TLQV 67

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E D+     L+       ++L +   DAL  DF         +RI+ NLPYNI + LLF
Sbjct: 68  VELDRDLVARLQRRFG---DKLVVHAGDALAFDFGALHVPGRSLRIVGNLPYNISSPLLF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +      +         + QKEV ER+ A   S  + RLSV+   R    ++ D+ P  F
Sbjct: 125 HL---SAFADRVRDQHFMLQKEVVERMVAVPGSKAFSRLSVMLQVRYYMELVLDVPPGSF 181

Query: 196 FPSPKVTSTVIHFIP----HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            P PKV S V+  IP            + +L  +   AF +RRK LR +L  L       
Sbjct: 182 NPPPKVDSAVVRMIPWPADKSPYALVDMRALGTVVTLAFSQRRKVLRNTLGSLREAIDFD 241

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
             G +   RAE + + DF  + N L
Sbjct: 242 ALGFDLGRRAEEVPVADFVAVANAL 266


>gi|304388007|ref|ZP_07370178.1| dimethyladenosine transferase [Neisseria meningitidis ATCC 13091]
 gi|304337955|gb|EFM04094.1| dimethyladenosine transferase [Neisseria meningitidis ATCC 13091]
 gi|325127795|gb|EGC50703.1| dimethyladenosine transferase [Neisseria meningitidis N1568]
          Length = 259

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 128/261 (49%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F NI    +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|323490982|ref|ZP_08096176.1| dimethyladenosine transferase [Planococcus donghaensis MPA1U2]
 gi|323395338|gb|EGA88190.1| dimethyladenosine transferase [Planococcus donghaensis MPA1U2]
          Length = 292

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 142/294 (48%), Gaps = 23/294 (7%)

Query: 1   MTMNNKSHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           MT  + +  ++T  I++ Y +  KK +GQNFL+D NIL+KI   +        IEIG G 
Sbjct: 1   MT-KDIATPIRTQQIMTKYNLKVKKSLGQNFLIDPNILRKIVGQANLTKKSAAIEIGPGI 59

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-- 116
           G LT+ L    A KV+  E DQ+  P+L D  S + N + I+  D LK D +   +    
Sbjct: 60  GALTEHLA-REAGKVLAFEIDQRLLPVLADTLSPYDN-ISIVHSDILKADVQAAIDSELA 117

Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
               I ++ANLPY + T ++               + ++ QKEV ERITA+  +  YG L
Sbjct: 118 GYDDIVVVANLPYYVTTPIIL---KLLLEKLPIRGMVVMLQKEVAERITAKPGTKAYGSL 174

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGK 232
           S+   + T+A M   +   VF P P V S VI       P       +    +T+ +F +
Sbjct: 175 SIAIQYYTQAEMALTVPKSVFLPQPNVDSAVIRMTKREVPEVEVINEDFFFSVTRGSFVQ 234

Query: 233 RRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           RRKT+  +L         K+      L +A I+   R E L+I++F  +++ L 
Sbjct: 235 RRKTILNNLQVAMPSGKEKKEFILKALEEAEIDPTRRGETLTIKEFGLLSDKLY 288


>gi|120437829|ref|YP_863515.1| dimethyladenosine transferase [Gramella forsetii KT0803]
 gi|117579979|emb|CAL68448.1| dimethyladenosine transferase [Gramella forsetii KT0803]
          Length = 281

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 134/274 (48%), Gaps = 9/274 (3%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           NK  S         +  KK++GQ+FL D NI  KIA++        V+EIG G G LT+ 
Sbjct: 9   NKPSSNHRNNEDQGVRAKKHLGQHFLTDENIAAKIADTLSYNGYEKVLEIGPGTGVLTKH 68

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL   A +V VIE D +    L+        R  I + D LK D  + F       II N
Sbjct: 69  LLEKDA-EVHVIEIDTESVEYLESHYLHLRGR--IHEKDFLKHDLGQIFGQEQ-FAIIGN 124

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
            PYNI T+++F  +      P +  +   FQKEV +RI  ++ +  YG LSVLT    +A
Sbjct: 125 FPYNISTQIVFKVLQMRDQIPEFSGM---FQKEVAKRICEKEGNKTYGILSVLTQAFYEA 181

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             +F + P VF P PKV S V+      N  + C  +   +I + +F +RRKTLR SLK 
Sbjct: 182 EYLFTVPPSVFNPPPKVDSGVLRLRRKENFSLDCNEKLFFRIVKTSFNQRRKTLRNSLKS 241

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L   + L +  I   LR E L  + F  +T  + 
Sbjct: 242 LNLPDNLREDAI-FGLRPEQLGFQQFIELTQKIE 274


>gi|126662912|ref|ZP_01733911.1| dimethyladenosine transferase [Flavobacteria bacterium BAL38]
 gi|126626291|gb|EAZ96980.1| dimethyladenosine transferase [Flavobacteria bacterium BAL38]
          Length = 268

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 101/276 (36%), Positives = 141/276 (51%), Gaps = 13/276 (4%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MN+    +K      K+  KK++GQ+FL D +I K IA++        ++EIG G G LT
Sbjct: 1   MNSTEKQIK----MEKVTAKKHLGQHFLKDESIAKDIADTLSLEGYDKILEIGPGMGVLT 56

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL     +  VIE D++    L     +  N   II  D LK D  + FN   P  II
Sbjct: 57  KYLLD-KPTETFVIEIDKESVEYLGVHYPKLEN--HIISKDFLKYDLNEVFN-KEPFAII 112

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            N PYNI T+++F  +      P +  +   FQKEV +RI  +K S  YG LSVLT    
Sbjct: 113 GNFPYNISTQIVFKTLEMRDQIPEFAGM---FQKEVAQRICEKKGSKVYGILSVLTQAFY 169

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSL 241
           +A  +F + P VF P PKV S V+      N  +PC  +   ++ + AF +RRKTLR SL
Sbjct: 170 EAEYLFTVPPEVFNPPPKVDSGVLRLRRKENYSLPCDEKMFFRVVKTAFQQRRKTLRNSL 229

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           K     + L    I  +LR E L++E F  IT  +T
Sbjct: 230 KSFNFSDNLKLDTI-FDLRPEQLTVEQFIDITQKIT 264


>gi|121634495|ref|YP_974740.1| dimethyladenosine transferase [Neisseria meningitidis FAM18]
 gi|166221682|sp|A1KSW0|RSMA_NEIMF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120866201|emb|CAM09941.1| putative dimethyladenosine transferase [Neisseria meningitidis
           FAM18]
 gi|316983672|gb|EFV62653.1| dimethyladenosine transferase [Neisseria meningitidis H44/76]
 gi|325131849|gb|EGC54549.1| dimethyladenosine transferase [Neisseria meningitidis M6190]
 gi|325133788|gb|EGC56444.1| dimethyladenosine transferase [Neisseria meningitidis M13399]
 gi|325137899|gb|EGC60474.1| dimethyladenosine transferase [Neisseria meningitidis ES14902]
 gi|325143915|gb|EGC66225.1| dimethyladenosine transferase [Neisseria meningitidis M01-240013]
 gi|325200617|gb|ADY96072.1| dimethyladenosine transferase [Neisseria meningitidis H44/76]
          Length = 259

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 128/261 (49%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|78043122|ref|YP_361409.1| dimethyladenosine transferase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|119365012|sp|Q3A8X5|RSMA_CARHZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|77995237|gb|ABB14136.1| dimethyladenosine transferase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 291

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 145/285 (50%), Gaps = 21/285 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +LK IL+ + +     +GQ+FL D  IL KI E +       V+EIG G G LT+ L
Sbjct: 5   SPTTLKEILARHNLTLSHGLGQHFLTDFGILAKIVEKAEITKDDAVLEIGPGAGVLTR-L 63

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE---------KFFNIS 116
           L   A+ V+ IE D++  P+L + +    N + ++  DA +++F+         +F    
Sbjct: 64  LAQAAKYVVAIEIDKKLLPVLAETTGDLGNVV-VVNADAREINFDRVMAEQTGGEFGFEG 122

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P  I+ANLPY   + L+F             S+TL+ QKEV ERITA+  S  YG LSV
Sbjct: 123 KPYLIVANLPYYATSPLIFKVFEE---GYKVSSMTLMMQKEVAERITAKPGSKIYGSLSV 179

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRK 235
              + ++  ++  +   VFFP P+V S V+ F    N +         +I + AF  RRK
Sbjct: 180 ACQYFSEPRIVLKVPRTVFFPPPEVESAVVRFTLKENSLTSEERLKFFQIVRAAFATRRK 239

Query: 236 TLRQ------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           T+ +      +LKR   E +L + GI+ +LRAE +  E F R++ 
Sbjct: 240 TIAKSLSGALNLKRNYVEEVLLKVGIKPDLRAEQIPPESFYRLSQ 284


>gi|15676595|ref|NP_273739.1| dimethyladenosine transferase [Neisseria meningitidis MC58]
 gi|27151605|sp|Q9K0B7|RSMA_NEIMB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|7225925|gb|AAF41114.1| dimethyladenosine transferase [Neisseria meningitidis MC58]
 gi|325139924|gb|EGC62454.1| dimethyladenosine transferase [Neisseria meningitidis CU385]
          Length = 259

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 128/261 (49%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|218767820|ref|YP_002342332.1| dimethyladenosine transferase [Neisseria meningitidis Z2491]
 gi|254804581|ref|YP_003082802.1| dimethyladenosine transferase [Neisseria meningitidis alpha14]
 gi|27151604|sp|Q9JVC2|RSMA_NEIMA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|121051828|emb|CAM08134.1| putative dimethyladenosine transferase [Neisseria meningitidis
           Z2491]
 gi|254668123|emb|CBA04707.1| dimethyladenosine transferase [Neisseria meningitidis alpha14]
 gi|319410070|emb|CBY90404.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase; 16S rRNA
           dimethylase; high level kasugamycin resistance protein
           KsgA; kasugamycin dimethyltransferase) [Neisseria
           meningitidis WUE 2594]
          Length = 259

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 128/261 (49%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV +R+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|104773499|ref|YP_618479.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513494|ref|YP_812400.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|118600873|sp|Q1GBR1|RSMA_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122275736|sp|Q04C60|RSMA_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|103422580|emb|CAI97183.1| Dimethyladenosine transferase (16S rRNA dimethylase) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092809|gb|ABJ57962.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 296

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 152/297 (51%), Gaps = 25/297 (8%)

Query: 3   MNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M N+   +  ++T  I++ Y +  KK +GQNFL+DL+ ++ I  ++G   G  V+E+G G
Sbjct: 1   MTNRIPIASPVRTAAIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111
            G+LT+ LL  G  KV   E DQ    IL +             R ++I  D LK DF  
Sbjct: 61  IGSLTEQLLLAGG-KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFAT 119

Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
               FF++S P++++ANLPY I T ++FN + +      + SLTL+ QKEV ER+ AQ  
Sbjct: 120 DLAGFFDLSKPVKVVANLPYYITTPIIFNLLESSL---DFTSLTLMMQKEVAERLAAQPG 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKIT 226
           S  YG LS+    +    +  ++    F P PKV S V+   P   P      +   ++ 
Sbjct: 177 SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +  F +RRKTL  +LK L       E LL    ++   R E L+I DF RI+  + +
Sbjct: 237 KLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLDPRQRPEQLAISDFIRISQAIAE 293


>gi|171060583|ref|YP_001792932.1| dimethyladenosine transferase [Leptothrix cholodnii SP-6]
 gi|226732592|sp|B1Y7L9|RSMA_LEPCP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|170778028|gb|ACB36167.1| dimethyladenosine transferase [Leptothrix cholodnii SP-6]
          Length = 269

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 129/257 (50%), Gaps = 11/257 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQ+FL D ++L +I +      G  ++EIG G G +T  ++    +++ V+E
Sbjct: 2   KHIPRKRFGQHFLADQSVLDRIVQLIDPQPGEALVEIGPGLGAMTDPVVERC-KRLTVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFN 136
            D+     L+         L +I+ D LKVDF         P+R+I NLPYNI + +LF+
Sbjct: 61  LDRDLAARLRKRPE-----LTVIESDVLKVDFTALAQAAGRPVRVIGNLPYNISSPILFH 115

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +         +    + QKEV +R+ +   S  YGRLSV+  WR +   + D+ P  F 
Sbjct: 116 LLEQVA---SVQDQHFMLQKEVVDRMASAPGSKDYGRLSVMLQWRYQIESLLDVPPESFD 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S ++  +P   P     + L ++   AF +RRK LR +L R   E   H    +
Sbjct: 173 PPPRVDSAIVRMLPLAQPPAVDPKLLGELVTVAFSQRRKMLRNTLGRWL-EAREHGGAFD 231

Query: 257 TNLRAENLSIEDFCRIT 273
              RAE + + +F  +T
Sbjct: 232 LTRRAEEVPVAEFVALT 248


>gi|254251454|ref|ZP_04944772.1| Dimethyladenosine transferase [Burkholderia dolosa AUO158]
 gi|124894063|gb|EAY67943.1| Dimethyladenosine transferase [Burkholderia dolosa AUO158]
          Length = 275

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/276 (28%), Positives = 123/276 (44%), Gaps = 13/276 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIERVATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     L+         LE+   DAL  DF           +R++ NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFRSLAAPGDQPSLRVVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDKMLD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L ++   AF +RRK LR +L    G 
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYERHELPDVDPALLGEVVTAAFSQRRKMLRNTLGDYRGT 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                 G +   RAE++S+ ++  I   L   + + 
Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGIAQALAATRSVG 275


>gi|227497769|ref|ZP_03927955.1| dimethyladenosine transferase [Actinomyces urogenitalis DSM 15434]
 gi|226832812|gb|EEH65195.1| dimethyladenosine transferase [Actinomyces urogenitalis DSM 15434]
          Length = 310

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 136/287 (47%), Gaps = 18/287 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF+ D   +++I  ++G  +G TV+E+G G G+LT  +L
Sbjct: 18  PADVRALSQALGVRPTKTLGQNFVHDAGTVRRIVRAAGVRNGETVLEVGPGLGSLTLAIL 77

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISS----P 118
             GA  VI +E D      L         +   RL ++  DAL +D      ++     P
Sbjct: 78  EAGA-SVIAVEIDPPLAQALPVTVAQRMPEAAGRLRVVGADALSIDGPAALGLADGDPLP 136

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
            R++ANLPYN+   +L   ++A    P  ES+T++ Q EV +R+ A   S  YG  SV  
Sbjct: 137 TRLVANLPYNVAVPVLLTLLAA---LPSLESVTVMVQAEVADRLAAGPGSKVYGVPSVKA 193

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTL 237
            W   A     I   VF+P P V S ++  +    P      E++  +   AF +RRKTL
Sbjct: 194 AWYASARRTITIGRTVFWPVPNVDSALVELVRREPPSTRASREAVFAVVDAAFAQRRKTL 253

Query: 238 RQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           RQ+L  L G        +  AGI+   R E L + DF  +   L D 
Sbjct: 254 RQALAGLAGSPQAAEAAIRAAGIDPTRRGETLDVHDFAALAEALEDQ 300


>gi|119899174|ref|YP_934387.1| dimethyladenosine transferase [Azoarcus sp. BH72]
 gi|119671587|emb|CAL95500.1| dimethyladenosine transferase [Azoarcus sp. BH72]
          Length = 265

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/262 (35%), Positives = 142/262 (54%), Gaps = 11/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D NI+++I ++    +G  ++EIG G G +T  L+      + V+E
Sbjct: 8   GHRARKRFGQNFLSDPNIIRRIIDAIRPKEGDIMVEIGPGLGAMTTPLIERLGH-LNVVE 66

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L++     P +L I + DALK D   F ++ SP+R++ NLPYNI T +LF+ 
Sbjct: 67  IDRDLIARLRET--WTPEQLTIHEGDALKFD---FGSLGSPLRVVGNLPYNISTPILFHL 121

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
               T+    + +T + QKEV  R+ A+  +  YGRLSV+  +R +   +FD+ P  F P
Sbjct: 122 ---STFADRVKDMTFMLQKEVVMRMVAEPGTEEYGRLSVMLQYRFRMARVFDVPPGAFRP 178

Query: 198 SPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S+++   P         +   L +I   AFG+RRKTLR +LK   GE      G+
Sbjct: 179 APKVMSSIVRMAPLPPEELGARDEALLGQIVTAAFGQRRKTLRNTLKDFLGEADFAALGL 238

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +  LR E LS+ +F  I N + 
Sbjct: 239 DPGLRGERLSVAEFVAIANHVA 260


>gi|25027528|ref|NP_737582.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314]
 gi|259507064|ref|ZP_05749964.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314]
 gi|33516940|sp|Q8FQZ5|RSMA_COREF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|23492810|dbj|BAC17782.1| putative dimethyladenosine transferase [Corynebacterium efficiens
           YS-314]
 gi|259165342|gb|EEW49896.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314]
          Length = 289

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 133/280 (47%), Gaps = 18/280 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     + P K +GQNF+ D N +++I  ++       V+E+G G G+LT  L+  
Sbjct: 14  EIRALAEKLDVTPTKKLGQNFVHDPNTVRRIVTAADLTPEDHVVEVGPGLGSLTLALVEK 73

Query: 69  GARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            A  V  +E D +    L    +       ++L ++Q DALKV    F   + P  ++AN
Sbjct: 74  AA-SVTAVEIDPRLAAELPATFAWRAPGLADKLTVVQKDALKVQQSDF--TTQPTALVAN 130

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + ++     P    + ++ Q EV +R+ A   S  YG  SV   +  + 
Sbjct: 131 LPYNVSVPVLLHMLAE---FPSITKVLVMVQLEVADRLAAVPGSKIYGVPSVKASFYGEV 187

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSL 241
           +    I  HVF+P+P++ S ++  I    P P        +  +   AF +RRKTLR +L
Sbjct: 188 SKAGTIGKHVFWPAPQIESGLVKIIRTHTPWPQDDATRAKVWPVIDAAFLQRRKTLRAAL 247

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
               G     E  L  A I+  LR E L + D+ R+  ++
Sbjct: 248 SGHFGSASAAEEALRAADIDPQLRGERLDVADYVRLAGVI 287


>gi|269468227|gb|EEZ79917.1| dimethyladenosine transferase, rRNA methylation [uncultured SUP05
           cluster bacterium]
          Length = 254

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 86/256 (33%), Positives = 133/256 (51%), Gaps = 13/256 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K   +K  GQNFL D  I+ +I  +        ++EIG G G +T  LL     ++ VIE
Sbjct: 5   KHTARKRFGQNFLTDARIVDRIIATIAPKKNDNLLEIGPGKGAMTLPLLEEL-NQLHVIE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D     +L+    +    L I Q DALK D  K     +P+R++ NLPYNI + +LF+ 
Sbjct: 64  IDTDLIALLQSFGKE---NLIIHQGDALKFDVSKL---PAPLRVVGNLPYNISSPILFHL 117

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++      + + +  + QKEV ER+ A   +  YGRLSV+     +  M+F + P  F P
Sbjct: 118 LNNRE---YIQDMIFMLQKEVVERMVASNGNKTYGRLSVMIQAFFEVEMIFVVPPESFEP 174

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           +PKV S +++  P    +   +   +KI + +F +RRKTLR  LK L  +    Q  I+ 
Sbjct: 175 APKVDSAIVYLKPLEKNLIDDITVFEKIVKASFAQRRKTLRNCLKSLLTQ---EQTSIDL 231

Query: 258 NLRAENLSIEDFCRIT 273
           + RAE LS+ +F  +T
Sbjct: 232 SQRAEMLSVNEFITLT 247


>gi|296314706|ref|ZP_06864647.1| dimethyladenosine transferase [Neisseria polysaccharea ATCC 43768]
 gi|296838541|gb|EFH22479.1| dimethyladenosine transferase [Neisseria polysaccharea ATCC 43768]
          Length = 259

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 129/261 (49%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ VIE 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVHPQADDIVIEIGPGLAAITEPLAK-KLNRLHVIEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F +I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|311897999|dbj|BAJ30407.1| putative dimethyladenosine transferase [Kitasatospora setae
           KM-6054]
          Length = 294

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 17/278 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +   + + P K  GQNF++D N +++I  ++G  D   V+E+G G G+LT  LL
Sbjct: 15  AADIRALAEAFGVKPTKQRGQNFVIDGNTVRRIVRAAGVTDEDAVVEVGPGLGSLTLALL 74

Query: 67  TLGARKVIVIEKDQQFFPILKDIS----SQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            + AR V  +E D      L D          +  +++  DA++V         +P  ++
Sbjct: 75  EV-ARHVTAVEIDPVLARHLPDTVRGRMPAKADSFDLVLSDAMEVTE---LPGPAPTALV 130

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A+  +  YG  SV   W  
Sbjct: 131 ANLPYNVAVPVLLHMLE---HFPSIERTLVMVQSEVADRLAAKPGNKVYGVPSVKANWYA 187

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241
                  I  +VF+P+P V S ++  +    P        +  +   AF +RRKTLR +L
Sbjct: 188 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRDPPATTATRREVFAVVDAAFAQRRKTLRAAL 247

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
               G     E  L  AGI+  LR E L++E F  I  
Sbjct: 248 AGWAGSPAAAEEALRGAGIDHTLRGEMLTVEQFAAIAE 285


>gi|325267670|ref|ZP_08134321.1| dimethyladenosine transferase [Kingella denitrificans ATCC 33394]
 gi|324980794|gb|EGC16455.1| dimethyladenosine transferase [Kingella denitrificans ATCC 33394]
          Length = 259

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 11/260 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L T   R++ V E 
Sbjct: 5   HKARKRFGQNFLQDTRIITDIVNAVRPQPDDIVIEIGPGLAAITEPL-TRHLRQLHVCEI 63

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK+      ++L I + D L+ D   F +I+   +I+ NLPYNI T LLF+  
Sbjct: 64  DRDIIRFLKE--QPFADKLVIHEGDVLQFD---FGSIAGRKKIVGNLPYNISTPLLFHLA 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ AQ  +  YGRLSV+  +     M+ ++ P  F P+
Sbjct: 119 EVAD---EVVDMHFMLQKEVVERMVAQPKTNDYGRLSVMLQYFFDMEMLIEVPPESFDPA 175

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  N I           + ++AF +RRKT+R +LK +  +  L   GI 
Sbjct: 176 PKVDSAVVRMIPVPNRIGTAADFAHFSNLVRDAFHQRRKTIRNNLKGIADDEDLQAVGIL 235

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE ++ E + R++N L
Sbjct: 236 PQQRAEEIAPELYVRLSNHL 255


>gi|332283296|ref|YP_004415207.1| dimethyladenosine transferase [Pusillimonas sp. T7-7]
 gi|330427249|gb|AEC18583.1| dimethyladenosine transferase [Pusillimonas sp. T7-7]
          Length = 261

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQ+FL D  ++  I           V+EIG G   LT  LL +    + V+E 
Sbjct: 3   HQARKRFGQHFLTDDGVVDAIVRGIDPRHDDAVVEIGPGLSALTGPLLNVL-DHLTVVEI 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L+      P RL +I+ DAL VDF       S +RI+ NLPYNI + LLF+ +
Sbjct: 62  DRDLAARLRQ--GHKPERLTVIEGDALTVDFSSL---GSGLRIVGNLPYNISSPLLFHLM 116

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           ++            + Q+EV +R+ AQ +S  YGRLSV+   R +   +FD+ P  F P 
Sbjct: 117 ASAEH---VRDQHFMLQREVIDRMVAQPSSGDYGRLSVMLQSRYRMHKLFDVPPEAFDPP 173

Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P+V S V+   P       P   ++ +++   AF +RRK LR+ L            GI 
Sbjct: 174 PRVVSAVVRMAPLPDTRQKPKSGKAFEQVVARAFAQRRKMLRRGLADWAPSIDWDALGIP 233

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE LS+  F  +T+ L D 
Sbjct: 234 ETARAEELSVSQFMALTDHLLDK 256


>gi|297572123|ref|YP_003697897.1| dimethyladenosine transferase [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932470|gb|ADH93278.1| dimethyladenosine transferase [Arcanobacterium haemolyticum DSM
           20595]
          Length = 301

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 141/295 (47%), Gaps = 28/295 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + + + I P K +GQNF+ D   +++I   +G   G  V+E+G G G+LT  +L  G
Sbjct: 14  IRELAATFGIRPTKTLGQNFVHDAGTVRRIVRDAGVQAGDHVVEVGPGLGSLTLAILETG 73

Query: 70  ARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISS-------- 117
           A  +  IE D      L     ++  +   R  +   DA+++       +          
Sbjct: 74  A-VLSAIEIDPPLADALPGTIAEVQPESSERFAVTNRDAMEIHSVADLAVPRVVGEGGDS 132

Query: 118 ----PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P  ++ANLPYN+   +L   + +    P  E++T++ Q EV +R+ A+  S  YG 
Sbjct: 133 AEFTPKHLVANLPYNVAVPVLLTLLES---LPTLETVTVMVQLEVADRLAAEPGSKVYGV 189

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233
            SV   W         IS +VF+P P V S ++H   H  P     E++  +   AF +R
Sbjct: 190 PSVKANWYADVWRGAKISRNVFWPVPNVDSALVHMRRHPEPESVDREAVFGVVDAAFAQR 249

Query: 234 RKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           RKTLR +L    G     E +L  AG++ +LR E L+IE+F  I     + +++A
Sbjct: 250 RKTLRAALGAWAGSPARAEEILRAAGVDPSLRGERLTIENFIAIAR---NRENVA 301


>gi|254673623|emb|CBA09163.1| dimethyladenosine transferase [Neisseria meningitidis alpha275]
          Length = 259

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 128/261 (49%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|326563671|gb|EGE13923.1| dimethyladenosine transferase [Moraxella catarrhalis 103P14B1]
 gi|326565249|gb|EGE15434.1| dimethyladenosine transferase [Moraxella catarrhalis 12P80B1]
 gi|326573279|gb|EGE23247.1| dimethyladenosine transferase [Moraxella catarrhalis 101P30B1]
 gi|326575822|gb|EGE25745.1| dimethyladenosine transferase [Moraxella catarrhalis CO72]
          Length = 284

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 89/276 (32%), Positives = 138/276 (50%), Gaps = 14/276 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K  P+K  GQNFL D +I+ +I  +        ++EIG G G LT+ LL      + VIE
Sbjct: 12  KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLAE-VDGMTVIE 70

Query: 78  KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
            D+     LK +I +   +   II D+A+ V++            R++ NLPYNI T +L
Sbjct: 71  LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +    +    + +  + QKEV +RITA+ NS  YGRLSV+  +  ++  +  +    
Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187

Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLG-----GE 247
           F P PKVTS V    P+   PI    ES+   + +E+F  RRKTLR   K  G      E
Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           +   + GI  + R E L + +F  + +++  N+  +
Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNRQSS 283


>gi|311104078|ref|YP_003976931.1| dimethyladenosine transferase [Achromobacter xylosoxidans A8]
 gi|310758767|gb|ADP14216.1| dimethyladenosine transferase [Achromobacter xylosoxidans A8]
          Length = 263

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 11/261 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +   +K  GQNFL D ++++ I  +       TV+EIG G   LT+ LL      +  +E
Sbjct: 3   QHQARKRFGQNFLTDESVVESIVRAVSPARDDTVVEIGPGLSALTRPLLERL-DHLTAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+       +RL +++ DAL VDF +F      +R++ NLPYNI + LLF+ 
Sbjct: 62  IDRDLAARLRKQFDA--SRLTVVEADALTVDFSQF---GPALRVVGNLPYNISSPLLFHL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +   TW         + Q+EV +R+ AQ  S  + RLSV+   R +   +FD+ P  F P
Sbjct: 117 M---TWAGHVRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDP 173

Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++  +P       P    + + +   AF +RRK LR+ L     +       I
Sbjct: 174 PPKVVSAIVRMVPLPADRLRPVSERAFETVVARAFSQRRKMLRRVLADWAAQVPWEALDI 233

Query: 256 ETNLRAENLSIEDFCRITNIL 276
               RAE++S++ + R+ + L
Sbjct: 234 APTARAEDISVDRYIRLADAL 254


>gi|254670514|emb|CBA06283.1| dimethyladenosine transferase [Neisseria meningitidis alpha153]
          Length = 259

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 127/261 (48%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F NI    +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE++  E +  ++N L 
Sbjct: 235 PQDRAEHIVPEKYVALSNYLA 255


>gi|261400380|ref|ZP_05986505.1| dimethyladenosine transferase [Neisseria lactamica ATCC 23970]
 gi|269209816|gb|EEZ76271.1| dimethyladenosine transferase [Neisseria lactamica ATCC 23970]
          Length = 259

 Score =  265 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 126/263 (47%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L       + V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNCLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F +I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  +  L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE++  E +  ++N L D 
Sbjct: 235 PQDRAEHIEPEKYVALSNYLADK 257


>gi|326570246|gb|EGE20291.1| dimethyladenosine transferase [Moraxella catarrhalis BC8]
          Length = 284

 Score =  265 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K  P+K  GQNFL D +I+ +I  +        ++EIG G G LT+ LL      + VIE
Sbjct: 12  KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLAE-VDGMTVIE 70

Query: 78  KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
            D+     LK +I +   +   II D+A+ V++            R++ NLPYNI T +L
Sbjct: 71  LDRDLASQLKINIGANSYSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +    +    + +  + QKEV +RITA+ NS  YGRLSV+  +  ++  +  +    
Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187

Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLG-----GE 247
           F P PKVTS V    P+   PI    ES+   + +E+F  RRKTLR   K  G      E
Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +   + GI  + R E L + +F  + +++  N+
Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280


>gi|163753725|ref|ZP_02160848.1| dimethyladenosine transferase [Kordia algicida OT-1]
 gi|161325939|gb|EDP97265.1| dimethyladenosine transferase [Kordia algicida OT-1]
          Length = 260

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 94/257 (36%), Positives = 135/257 (52%), Gaps = 9/257 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK++GQ+FL D  + ++IA++        V+EIG G G LT+ LL        V E
Sbjct: 4   KVRAKKHLGQHFLKDEEVAQRIADTLTLNHYKNVLEIGPGMGVLTKYLLEKPV-TTYVCE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    LK    Q  N+  I+++D LK D +K F    P  II N PYNI T+++F  
Sbjct: 63  IDTESVAYLKAHYLQLSNK--ILEEDFLKYDLKKTFK-DEPFAIIGNFPYNISTQIVFKT 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P +  +   FQKEV +RI A   +  YG LSVLT     A  +F + P+VF P
Sbjct: 120 LEMRDQIPEFSGM---FQKEVAQRICAPHGNKTYGILSVLTQAFYDAEYLFTVPPNVFKP 176

Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S V+  I   N  +PC  +   ++ + AF +RRKTLR SLK     + L +  I 
Sbjct: 177 PPKVDSGVMRLIRKENYTLPCEEKLFFRVVKTAFQQRRKTLRNSLKTFNLSDNLKEDTI- 235

Query: 257 TNLRAENLSIEDFCRIT 273
             LR E +S++ F  +T
Sbjct: 236 FGLRPEQVSVQGFVDLT 252


>gi|294786234|ref|ZP_06751488.1| dimethyladenosine transferase [Parascardovia denticolens F0305]
 gi|315225768|ref|ZP_07867556.1| dimethyladenosine transferase [Parascardovia denticolens DSM 10105]
 gi|294485067|gb|EFG32701.1| dimethyladenosine transferase [Parascardovia denticolens F0305]
 gi|315119900|gb|EFT83032.1| dimethyladenosine transferase [Parascardovia denticolens DSM 10105]
          Length = 291

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 142/280 (50%), Gaps = 15/280 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +++IA          VIE+G G G+LT  LL
Sbjct: 14  AADIRRIAASTGINPTKRFGQNFVVDPGTVRRIARLGDLGPDSRVIEVGPGLGSLTLALL 73

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKV---DFEKFFNISSP- 118
             GA +V+ +E D +   +L    +    Q  +R  +I++DAL++     E+ F    P 
Sbjct: 74  ETGA-QVLAVEIDPRLADLLPSTVRAQMPQAMSRFHLIREDALQLGLDQVEEIFGSPLPQ 132

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           + +++NLPYN+ T ++   +      P   S T++ QKEV +R+TAQ  S  YG  SV  
Sbjct: 133 LTLMSNLPYNVATPIILTLLER---FPSLASFTVMVQKEVADRLTAQPGSKIYGVPSVKL 189

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRK 235
            W  +A     +   VF+P+P V S ++ F  +     P     E    +   AF +RRK
Sbjct: 190 AWYGQAKPAGIVGASVFWPAPHVDSALVAFTRYDQGQGPRTDLRERTFTLVDAAFSQRRK 249

Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           TL  +LK++       +AGI+   R E L++E+F R+ + 
Sbjct: 250 TLHAALKKMVPTAAFEKAGIDPTRRGETLTMEEFTRLASA 289


>gi|116628883|ref|YP_814055.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323]
 gi|116094465|gb|ABJ59617.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323]
          Length = 298

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 158/301 (52%), Gaps = 25/301 (8%)

Query: 1   MTMNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55
           M M+N    +  ++T  I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG
Sbjct: 1   MKMSNSMPIASPVRTQAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIG 60

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDF 109
            G G+LT+ LL  GA KV+  E DQ    ILK+         +  +R +++  D LK +F
Sbjct: 61  PGIGSLTEQLLLAGA-KVLAYEVDQDLPEILKNELPQKIDGEELNSRFKLVMKDVLKANF 119

Query: 110 EK----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
            K    F +++ P++I+ANLPY I T ++FN I +D     + SLTL+ QKEV ER+ A 
Sbjct: 120 TKDSDGFLDLNKPVKIVANLPYYITTPIIFNLIKSDL---DFSSLTLMMQKEVAERLVAI 176

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKK 224
             +  YG L++    R    +  ++    F P PKV S V+   P    P          
Sbjct: 177 PKTKEYGPLTIAVQSRMNVELAEEVKSTSFMPRPKVDSAVVVLTPLTEKPNIDDYSFFDH 236

Query: 225 ITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           + +  F +RRKTL  +LK L       E +++  G++  +R E L++  F  + ++L D 
Sbjct: 237 VVKMCFAQRRKTLANNLKSLVRDKDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQ 296

Query: 280 Q 280
           Q
Sbjct: 297 Q 297


>gi|312797254|ref|YP_004030176.1| Dimethyladenosine transferase [Burkholderia rhizoxinica HKI 454]
 gi|312169029|emb|CBW76032.1| Dimethyladenosine transferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 286

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 12/265 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H     +K  GQNFL+D  ++  I E+        ++EIG G G LT  LL    + + 
Sbjct: 5   QHQGHFARKRFGQNFLVDTGVIDAIVEAIRPQPADRLVEIGPGLGALTAPLLER-VQTLH 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGT 131
            +E D+     L+       +RL +   DAL  DF    +     + +R++ NLPYNI +
Sbjct: 64  AVELDRDLIARLQQRFG---SRLVLHAGDALAFDFASLADPAHIGASLRVVGNLPYNISS 120

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            LLF+     ++         + Q EV ER+ A+  S  Y RL+V+  +R     + ++ 
Sbjct: 121 PLLFHL---ASFADEVIDQHFMLQDEVVERMVAEPGSKDYSRLTVMLQYRYAIDKLIEVP 177

Query: 192 PHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           P  F P+PKVTS V+  IP    +  P  +  L ++   AF +RRK LR +L    G   
Sbjct: 178 PESFEPAPKVTSAVVRMIPRAAGDVPPVDIVRLGEVVTAAFSQRRKMLRNTLAAYRGRVD 237

Query: 250 LHQAGIETNLRAENLSIEDFCRITN 274
               G +   RAE++ + ++  +  
Sbjct: 238 FDALGFDLARRAEDVPVLEYVALAQ 262


>gi|297566999|ref|YP_003685971.1| dimethyladenosine transferase [Meiothermus silvanus DSM 9946]
 gi|296851448|gb|ADH64463.1| dimethyladenosine transferase [Meiothermus silvanus DSM 9946]
          Length = 276

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 90/276 (32%), Positives = 140/276 (50%), Gaps = 18/276 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
            S +++ +L  Y +   K  GQNFL++   L++I  + G   G  V E+G G G LT+ L
Sbjct: 12  SSRAVRELLERYGLRADKRFGQNFLVEAGYLQRIVAAVGFKPGERVYEVGPGLGTLTRAL 71

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              GA KV  +E D++  P+  +  +  P  +E+I  DAL+ D+              NL
Sbjct: 72  AEAGA-KVTAVEMDRRLEPVHAETLAHLP--VEVIWGDALEFDWRSI---PPGSLFAGNL 125

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYNI T L+   + +      +  + +L QKEV  R+ A   +P YG LS+     ++A 
Sbjct: 126 PYNIATPLITKLLLSRR----FRCIVVLVQKEVALRMVAAPGTPEYGVLSLRIQHHSQAR 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL- 244
            +FD+ P VF P PKVTS+++   P+ NP       L ++ + AF +RRKTL  +LK   
Sbjct: 182 RLFDLPPGVFLPPPKVTSSLVRLEPNANP---DDPELFRLIEAAFAQRRKTLSNALKAAE 238

Query: 245 ----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                    L Q G+   +R E LS+E F  + ++L
Sbjct: 239 YPPQAVTAALVQMGLPPQIRGEALSLEQFRTLHSLL 274


>gi|298369212|ref|ZP_06980530.1| dimethyladenosine transferase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283215|gb|EFI24702.1| dimethyladenosine transferase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 259

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 126/260 (48%), Gaps = 11/260 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ VIE 
Sbjct: 4   HKARKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVGRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVVEMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK   G+  L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKEFAGDEDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE+++ E +  ++N L
Sbjct: 235 PQDRAEHIAPEKYVELSNYL 254


>gi|261363715|ref|ZP_05976598.1| dimethyladenosine transferase [Neisseria mucosa ATCC 25996]
 gi|288568281|gb|EFC89841.1| dimethyladenosine transferase [Neisseria mucosa ATCC 25996]
          Length = 259

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 88/260 (33%), Positives = 126/260 (48%), Gaps = 11/260 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L       + VIE 
Sbjct: 4   HKARKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNSLHVIEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G+  L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDEDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE+++ E +  ++N L
Sbjct: 235 PQDRAEHIAPEKYVELSNYL 254


>gi|240112378|ref|ZP_04726868.1| dimethyladenosine transferase [Neisseria gonorrhoeae MS11]
 gi|254493179|ref|ZP_05106350.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae 1291]
 gi|268598439|ref|ZP_06132606.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae MS11]
 gi|212278037|gb|ACJ23033.1| KsgA [Neisseria gonorrhoeae]
 gi|226512219|gb|EEH61564.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae 1291]
 gi|268582570|gb|EEZ47246.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae MS11]
          Length = 259

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F NI    +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV +R+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVADMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE+++ E +  ++N L D 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257


>gi|261392930|emb|CAX50515.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase; 16S rRNA
           dimethylase; high level kasugamycin resistance protein
           KsgA; kasugamycin dimethyltransferase) [Neisseria
           meningitidis 8013]
          Length = 259

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 127/261 (48%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L    I 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|296113252|ref|YP_003627190.1| dimethyladenosine transferase [Moraxella catarrhalis RH4]
 gi|295920946|gb|ADG61297.1| dimethyladenosine transferase [Moraxella catarrhalis RH4]
 gi|326562888|gb|EGE13175.1| dimethyladenosine transferase [Moraxella catarrhalis 46P47B1]
 gi|326576903|gb|EGE26809.1| dimethyladenosine transferase [Moraxella catarrhalis O35E]
          Length = 284

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K  P+K  GQNFL D +I+ +I  +        ++EIG G G LT+ LL      + VIE
Sbjct: 12  KHAPRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLAE-VDGMTVIE 70

Query: 78  KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
            D+     LK +I +   +   II D+A+ V++            R++ NLPYNI T +L
Sbjct: 71  LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +    +    + +  + QKEV +RITA+ NS  YGRLSV+  +  ++  +  +    
Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187

Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLG-----GE 247
           F P PKVTS V    P+   PI    ES+   + +E+F  RRKTLR   K  G      E
Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +   + GI  + R E L + +F  + +++  N+
Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280


>gi|313668821|ref|YP_004049105.1| dimethyladenosine transferase [Neisseria lactamica ST-640]
 gi|313006283|emb|CBN87746.1| putative dimethyladenosine transferase [Neisseria lactamica 020-06]
          Length = 259

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L       + V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNCLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F +I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S VI  IP  + I      E   K+ + AF +RRKT+R +LK L  +  L   GI 
Sbjct: 175 PKVDSAVIRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE+++ E +  ++N L D 
Sbjct: 235 PQDRAEHIAPEKYIALSNYLADK 257


>gi|258510150|ref|YP_003183584.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476876|gb|ACV57195.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 284

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 17/281 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
            +  +K +L  + +I KK  GQNFL+D  +L  I  +        V+E+G G G LT  L
Sbjct: 5   SAREVKELLRRHGVIAKKGYGQNFLVDARVLDGIVRAVAPDARTVVLEVGPGLGALTAAL 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRI 121
               A++V+ IEKD+   P+L ++ + H N  E++ +D LKVD         +    +  
Sbjct: 65  AER-AKRVVAIEKDESLRPVLDEVLAPHGNA-EVVYEDCLKVDLRALLAPRLDEGDRLVF 122

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
            ANLPY + T +LF  + +D          ++ Q+EV +R+ A+     YG LS+   +R
Sbjct: 123 AANLPYYVTTPILFQVLESDVP---VSRAVVMVQREVADRMVARPGGKDYGVLSIGVQYR 179

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQ 239
            +   +F++ P  F P P V S V+       P        +L ++ + AFG RRKTL  
Sbjct: 180 GEVRRLFNVPPSAFLPQPGVESAVVEIDCDKRPAVRAADEAALFRVVRAAFGTRRKTLEN 239

Query: 240 SLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           +L       +      +  AGI+   RAE LS+ DF R+ +
Sbjct: 240 ALAAGLGMPKEMVRQKVVAAGIDPGARAEQLSLADFVRLAD 280


>gi|134296900|ref|YP_001120635.1| dimethyladenosine transferase [Burkholderia vietnamiensis G4]
 gi|166221657|sp|A4JHP7|RSMA_BURVG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|134140057|gb|ABO55800.1| dimethyladenosine transferase [Burkholderia vietnamiensis G4]
          Length = 276

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 127/276 (46%), Gaps = 13/276 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  + G + G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVATIGPVRGQRMVEIGPGLGALTEPLIARVATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     L+         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFGSLAAPGHAPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+ P       + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKMLD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYAPHELPDVDPVLLGELVTAAFSQRRKMLRNTLGAYRDT 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                 G +   RAE++S+ ++  +   L   +++A
Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALARTRNVA 275


>gi|225075613|ref|ZP_03718812.1| hypothetical protein NEIFLAOT_00629 [Neisseria flavescens
           NRL30031/H210]
 gi|224953035|gb|EEG34244.1| hypothetical protein NEIFLAOT_00629 [Neisseria flavescens
           NRL30031/H210]
          Length = 257

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 128/261 (49%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        +IEIG G   +T+ L      ++ V E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQPDDIMIEIGPGLAAITEPLAK-KLNRLHVCEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F +I    +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNSIEGKKKIVGNLPYNISTPLLFRLS 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ AQ  +  YGRL V+  +     M+ ++ P  F P+
Sbjct: 118 EVAD---DVIDMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVELSNYLA 255


>gi|86140929|ref|ZP_01059488.1| dimethyladenosine transferase [Leeuwenhoekiella blandensis MED217]
 gi|85832871|gb|EAQ51320.1| dimethyladenosine transferase [Leeuwenhoekiella blandensis MED217]
          Length = 285

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/270 (35%), Positives = 142/270 (52%), Gaps = 14/270 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D +I KKIAE+        V+EIG G G LT+ LL   +  V  ++ 
Sbjct: 18  VKAKKHLGQHFLKDESIAKKIAETLSYDGYSEVLEIGPGTGVLTKYLLRKDSN-VTAMDL 76

Query: 79  DQQFFPILKDISS-QHPN-----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           D +    L      +HP       L +++ D LK D  K F   +   I  N PYNI T+
Sbjct: 77  DSESIVYLNHSFPLEHPQLMEGCTLNVVEADFLKFDLSKLFGDQA-FAITGNFPYNISTQ 135

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++F  +      P +  +   FQKEV +RI  ++ S  YG LSVL      A  +F + P
Sbjct: 136 IVFKMLEWRDQVPEFSGM---FQKEVAQRICEKEGSKAYGILSVLAQAFYDAEYLFTVPP 192

Query: 193 HVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
            VF P PKV S V+      N   + C  ++L K+ + AF +RRKTLR SLK+L   +  
Sbjct: 193 GVFNPPPKVDSGVLRLTRKPNYKDLACDPDALYKVVKMAFQQRRKTLRNSLKQLELSDAF 252

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            ++ I  N+R E LS+E F ++T  +T+++
Sbjct: 253 RESEI-FNMRPEQLSVEAFIKLTQDITNDK 281


>gi|238897970|ref|YP_002923650.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|259494251|sp|C4K4K9|RSMA_HAMD5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|229465728|gb|ACQ67502.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 267

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/265 (35%), Positives = 137/265 (51%), Gaps = 10/265 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
                KK  GQNFL D  ++ +I  S       T+IEIG G G LT  L      K++VI
Sbjct: 7   QGHFAKKRFGQNFLTDEFVIDQIISSIHPSPEQTLIEIGPGLGALTLPLADQ-MDKILVI 65

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLF 135
           E D+     L     Q  ++L + Q D + V+F +       P+RI+ NLPYNI T LLF
Sbjct: 66  ELDRHLADRLNQH-PQLKDKLILYQQDVMTVNFSELSATFKQPLRILGNLPYNISTPLLF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + Q+EV  R+ A  N+  YGRLSV+  +  K   + ++ P  F
Sbjct: 125 HLFKD---IHRIDDMHFMLQREVVNRLLAAPNTKAYGRLSVMVQYHCKVIPILEVPPDAF 181

Query: 196 FPSPKVTSTVIHFIPHL---NPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            P PKV S +I  +P+    +P P   +E L  +T++AF +RRKTL  SL  L  +  L 
Sbjct: 182 TPIPKVYSAMIRLLPYRSLSHPYPVTDIERLNLVTRQAFNQRRKTLHNSLGALFTDQELA 241

Query: 252 QAGIETNLRAENLSIEDFCRITNIL 276
           + GI   LRAEN+S+E +C + N L
Sbjct: 242 ETGICPKLRAENVSVEQYCLLANRL 266


>gi|332969263|gb|EGK08291.1| dimethyladenosine transferase [Kingella kingae ATCC 23330]
          Length = 262

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +   +    VIEIG G   +T+ L T    ++ V E 
Sbjct: 9   HKARKRFGQNFLQDTRIISDIVNAVRPVPDDIVIEIGPGLAAITEPL-TRKLNQLHVCEI 67

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK       N+L I   D L+ D   F +I+   +I+ NLPYNI T LLF   
Sbjct: 68  DRDIITFLKK--QSFANKLVIHDGDVLQFD---FRSIAGRKKIVGNLPYNISTPLLFRLA 122

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   +  YGRLSV+  +     M+ ++ P  F P+
Sbjct: 123 EIAD---EVIDMHFMLQKEVVERMVATPKTNDYGRLSVMLQYFFDMEMLIEVPPESFNPA 179

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  N I      +    + ++AF +RRKT+R +LK +  ++ L   GI 
Sbjct: 180 PKVDSAVVRMIPVENRIGKAENFKHFSDLVRDAFHQRRKTIRNNLKEIASDDDLQAVGIL 239

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE ++ + + +++N L + 
Sbjct: 240 PQQRAEEIAPDTYVKLSNYLVNK 262


>gi|293603517|ref|ZP_06685938.1| dimethyladenosine transferase [Achromobacter piechaudii ATCC 43553]
 gi|292817953|gb|EFF77013.1| dimethyladenosine transferase [Achromobacter piechaudii ATCC 43553]
          Length = 261

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 133/265 (50%), Gaps = 11/265 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +   +K  GQNFL D ++++ I  +        V+EIG G   LT+ LL      +  +E
Sbjct: 3   QHQARKRFGQNFLTDESVVESIVRAVAPARDDAVVEIGPGLSALTRPLLERL-DHLTAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+       +RL +++ DAL VDF +F    S +R++ NLPYNI + LLF+ 
Sbjct: 62  IDRDLAARLRKQFEA--SRLTVVEADALTVDFSQF---GSALRVVGNLPYNISSPLLFHL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +   TW         + Q+EV +R+ AQ  S  + RLSV+   R +   +FD+ P  F P
Sbjct: 117 M---TWADHIRDQHFMLQREVIDRMVAQPGSGDFSRLSVMLQSRYRMHKLFDVPPEAFDP 173

Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S ++  +P       P  + + + +   AF +RRK LR+ L     +       I
Sbjct: 174 PPKVVSAIVRMVPLPADRLQPVSVRAFETVVARAFSQRRKMLRRVLADWAPQVPWEALDI 233

Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280
               RAE++S++ + R+++ L + +
Sbjct: 234 APTARAEDISVDRYIRLSDALVEAK 258


>gi|325125130|gb|ADY84460.1| Dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 296

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 25/297 (8%)

Query: 3   MNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M N+   +  ++T  I++ Y +  KK +GQNFL+DL+ ++ I  ++G   G  V+E+G G
Sbjct: 1   MTNRIPIASPVRTAAIVNRYFVHAKKNLGQNFLVDLDAVRGIVRAAGIEPGDQVVEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111
            G+LT+ LL  G  KV   E DQ    IL +             R ++I  D LK DF  
Sbjct: 61  IGSLTEQLLLAGG-KVTAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFAT 119

Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
               FF++S P++++ANLPY I T ++FN +    +   + SLTL+ QKEV ER+ AQ  
Sbjct: 120 DLAGFFDLSKPVKVVANLPYYITTPIIFNLLE---YSLDFTSLTLMMQKEVAERLAAQPG 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKIT 226
           S  YG LS+    +    +  ++    F P PKV S V+   P   P      +   ++ 
Sbjct: 177 SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +  F +RRKTL  +LK L       E LL    +    R E L+I DF RI+  + +
Sbjct: 237 KLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLAPRQRPEQLAISDFIRISQAIAE 293


>gi|194097992|ref|YP_002001040.1| dimethyladenosine transferase [Neisseria gonorrhoeae NCCP11945]
 gi|239998459|ref|ZP_04718383.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02]
 gi|240013584|ref|ZP_04720497.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI18]
 gi|240080164|ref|ZP_04724707.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19]
 gi|240115118|ref|ZP_04729180.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID18]
 gi|240117401|ref|ZP_04731463.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID1]
 gi|240120653|ref|ZP_04733615.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID24-1]
 gi|240122958|ref|ZP_04735914.1| dimethyladenosine transferase [Neisseria gonorrhoeae PID332]
 gi|240125209|ref|ZP_04738095.1| dimethyladenosine transferase [Neisseria gonorrhoeae SK-92-679]
 gi|240127664|ref|ZP_04740325.1| dimethyladenosine transferase [Neisseria gonorrhoeae SK-93-1035]
 gi|260441065|ref|ZP_05794881.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2]
 gi|268594320|ref|ZP_06128487.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02]
 gi|268596315|ref|ZP_06130482.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19]
 gi|268600793|ref|ZP_06134960.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID18]
 gi|268603098|ref|ZP_06137265.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID1]
 gi|268681579|ref|ZP_06148441.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID332]
 gi|268683807|ref|ZP_06150669.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae SK-92-679]
 gi|268686049|ref|ZP_06152911.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291044398|ref|ZP_06570107.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2]
 gi|226732603|sp|B4RJV5|RSMA_NEIG2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|193933282|gb|ACF29106.1| putative dimethyladenosine transferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|212278025|gb|ACJ23027.1| KsgA [Neisseria gonorrhoeae]
 gi|212278027|gb|ACJ23028.1| KsgA [Neisseria gonorrhoeae]
 gi|212278029|gb|ACJ23029.1| KsgA [Neisseria gonorrhoeae]
 gi|212278031|gb|ACJ23030.1| KsgA [Neisseria gonorrhoeae]
 gi|212278033|gb|ACJ23031.1| KsgA [Neisseria gonorrhoeae]
 gi|212278035|gb|ACJ23032.1| KsgA [Neisseria gonorrhoeae]
 gi|212278039|gb|ACJ23034.1| KsgA [Neisseria gonorrhoeae]
 gi|212278041|gb|ACJ23035.1| KsgA [Neisseria gonorrhoeae]
 gi|212278043|gb|ACJ23036.1| KsgA [Neisseria gonorrhoeae]
 gi|212278045|gb|ACJ23037.1| KsgA [Neisseria gonorrhoeae]
 gi|212278047|gb|ACJ23038.1| KsgA [Neisseria gonorrhoeae]
 gi|212278049|gb|ACJ23039.1| KsgA [Neisseria gonorrhoeae]
 gi|212278051|gb|ACJ23040.1| KsgA [Neisseria gonorrhoeae]
 gi|212278053|gb|ACJ23041.1| KsgA [Neisseria gonorrhoeae]
 gi|212278055|gb|ACJ23042.1| KsgA [Neisseria gonorrhoeae]
 gi|212278057|gb|ACJ23043.1| KsgA [Neisseria gonorrhoeae]
 gi|212278059|gb|ACJ23044.1| KsgA [Neisseria gonorrhoeae]
 gi|212278061|gb|ACJ23045.1| KsgA [Neisseria gonorrhoeae]
 gi|212278063|gb|ACJ23046.1| KsgA [Neisseria gonorrhoeae]
 gi|212278065|gb|ACJ23047.1| KsgA [Neisseria gonorrhoeae]
 gi|212278067|gb|ACJ23048.1| KsgA [Neisseria gonorrhoeae]
 gi|268547709|gb|EEZ43127.1| dimethyladenosine transferase [Neisseria gonorrhoeae 35/02]
 gi|268550103|gb|EEZ45122.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA19]
 gi|268584924|gb|EEZ49600.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID18]
 gi|268587229|gb|EEZ51905.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID1]
 gi|268621863|gb|EEZ54263.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae PID332]
 gi|268624091|gb|EEZ56491.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae SK-92-679]
 gi|268626333|gb|EEZ58733.1| dimethyladenosine transferase dimethyltransferase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291011292|gb|EFE03288.1| dimethyladenosine transferase [Neisseria gonorrhoeae DGI2]
 gi|317163741|gb|ADV07282.1| dimethyladenosine transferase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 259

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE+++ E +  ++N L D 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257


>gi|297621735|ref|YP_003709872.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044]
 gi|297377036|gb|ADI38866.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044]
          Length = 283

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/284 (33%), Positives = 137/284 (48%), Gaps = 18/284 (6%)

Query: 1   MTMN----NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGA 56
           MT N    +    L+  L    I PKK + QNFL+D NI+ KI   +       V+EIG 
Sbjct: 5   MTSNPLRLSNPSQLRQYLEILGISPKKSLSQNFLIDGNIIDKIISLAEINAQDQVLEIGP 64

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           GPG LT  L   GAR V+ +EKD+     L++        + +I +D LKVD EK   +S
Sbjct: 65  GPGALTDALHQHGAR-VLAVEKDRILAKALQER----GGDIRVICEDVLKVDLEK--ELS 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
               +IANLPYNI + +L + +        ++ + ++ Q EV ER+TA   +  YG L+V
Sbjct: 118 ERATVIANLPYNITSPILTSLL---PKTHVFKRIVVMVQLEVAERLTASPGNKTYGSLTV 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
            +   +     F +S   FFP P V S V+ F     P     E+  ++ + AFG+RRK 
Sbjct: 175 FSNLFSTPQWGFKVSRRCFFPEPNVDSAVVRFDLSPPPKEVEDEAFFQLIRTAFGQRRKM 234

Query: 237 LRQSLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L+ SLK+L         L   G +   R E LS   F      L
Sbjct: 235 LKSSLKKLYPSSSVMQALAGIGFQETARPEELSSNQFVEFYRHL 278


>gi|163855067|ref|YP_001629365.1| dimethyladenosine transferase [Bordetella petrii DSM 12804]
 gi|226729759|sp|A9I5F2|RSMA_BORPD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|163258795|emb|CAP41094.1| dimethyladenosine transferase [Bordetella petrii]
          Length = 262

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 133/261 (50%), Gaps = 11/261 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +   +K  GQ+FL D ++++ I  +     G  V+EIG G   LTQ LL  G   + V+E
Sbjct: 3   RHQARKRFGQHFLTDDSVVEAIVRAIAPARGDRVVEIGPGLSALTQPLL-RGLDHLTVVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L++  +  P RL +I+ DAL VD   F ++   +R++ NLPYNI + LLF+ 
Sbjct: 62  IDRDLAARLRN--AHAPGRLTVIEADALTVD---FASLGERLRVVGNLPYNISSPLLFHL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++A            + Q+EV +R+ A   S  YGRLSV+   R +   +FD+ P  F P
Sbjct: 117 MAAAD---TVRDQHFMLQREVIDRMVAAPGSADYGRLSVMLQSRYRMDKLFDVPPEAFDP 173

Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P+V S V+  +P       P    +L+ +   AF +RRK LR+ L             I
Sbjct: 174 PPRVVSAVVRMVPLPADRLRPASEAALQAVVARAFAQRRKMLRRGLGDWAALVPWDALDI 233

Query: 256 ETNLRAENLSIEDFCRITNIL 276
               RAE +S+E F R+T+ L
Sbjct: 234 APTARAEEISVEKFIRLTDAL 254


>gi|309378797|emb|CBX22623.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 259

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 126/261 (48%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L       + V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNCLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F +I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  +  L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELATDEDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|255068286|ref|ZP_05320141.1| dimethyladenosine transferase [Neisseria sicca ATCC 29256]
 gi|255047478|gb|EET42942.1| dimethyladenosine transferase [Neisseria sicca ATCC 29256]
          Length = 259

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/260 (33%), Positives = 128/260 (49%), Gaps = 11/260 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ VIE 
Sbjct: 4   HKARKRFGQNFLQDTRIIADIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVIEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F +I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNSIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G+  L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDEDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE+++ E +  ++N L
Sbjct: 235 PQDRAEHIAPEKYVELSNYL 254


>gi|90416846|ref|ZP_01224775.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2207]
 gi|90331193|gb|EAS46437.1| dimethyladenosine transferase [marine gamma proteobacterium
           HTCC2207]
          Length = 266

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 137/264 (51%), Gaps = 8/264 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +   +K  GQNFL+D +I+ +I  + G      +IEIG G   +T+ L+      + V+E
Sbjct: 4   QHQARKRFGQNFLVDQHIIGQIVAAIGPSADDNLIEIGPGTAAITEHLIQRCP-TMKVVE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L +  + +P+   I   DALK DF +F +    +R++ NLPYNI T +LF+ 
Sbjct: 63  LDRDLVGFLTEKFADYPD-FSIYSGDALKTDFAQFHD-GRQLRLVGNLPYNISTPILFHL 120

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +   T     + +  + Q+EV +R++A   S  YGRLS++  +  +   +  + P  F P
Sbjct: 121 LKNRT---LIKDMHFMLQREVVDRLSAAPGSKTYGRLSIMVQYHCRVMPLIPVPPSAFRP 177

Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S ++   PH          E L +I   AF +RRKTLR  ++      +  +A +
Sbjct: 178 APKVQSAIVRLKPHSTKPCLAENEELLSQIVSLAFQQRRKTLRNGIRAYAEHLVGVEAVV 237

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
           + + RAE+LS+ DF  ++N +   
Sbjct: 238 DLSRRAEDLSVADFVALSNYINQR 261


>gi|114569772|ref|YP_756452.1| dimethyladenosine transferase [Maricaulis maris MCS10]
 gi|122316226|sp|Q0AQC3|RSMA_MARMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|114340234|gb|ABI65514.1| dimethyladenosine transferase [Maricaulis maris MCS10]
          Length = 289

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 156/282 (55%), Gaps = 10/282 (3%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++ ++   L+ +++ + +  KK  GQ+FLLDLN+  KIA  +G +     IE+G GPG 
Sbjct: 1   MSL-DQLPPLRDVIASHDLGAKKSFGQHFLLDLNLTAKIARLAGDMSRDQAIEVGPGPGG 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L  GA  ++ +E D +F   L +I+     RL + Q DAL+VD            
Sbjct: 60  LTRAILAEGAASLLAVEMDSRFLGALDEINVASGGRLTVEQGDALEVDETALLTGPGDKV 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I++NLPYN+GT+LL  W+ A+  P +W    L+FQ+EV +R+ AQ     YGRL+V++  
Sbjct: 120 ILSNLPYNVGTQLLIKWLQAE--PIWWRRAVLMFQREVADRVVAQPGDKAYGRLAVISQS 177

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239
           R +A +   I    F P PKV S V+   P         + +L++IT  AFG+RRKTLR+
Sbjct: 178 RCQAHLALKIPARAFTPPPKVESAVVVLDPLPEAQQFKDVVALERITASAFGQRRKTLRR 237

Query: 240 SLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           SL +  G      + LL +AG+    RAE + I  F  +   
Sbjct: 238 SLAQAAGQGGTSADALLEEAGLNAGDRAEVIDITGFQSLARA 279


>gi|122136705|sp|Q2PG46|TFB1M_MACFA RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|84578981|dbj|BAE72924.1| hypothetical protein [Macaca fascicularis]
          Length = 345

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNADVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   +            +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L  E         LL  A I+  LR   LSI  F  +  +     D
Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFKSLCEVYRRMCD 312


>gi|291457904|ref|ZP_06597294.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291419448|gb|EFE93167.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 291

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 16/288 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M    +      ++       +K  GQNFL+D ++L+ I  +S       V+EIG G G 
Sbjct: 1   MNKLIRPGETLRVIKENNFQFQKRFGQNFLIDESVLRDILAASEITREDCVLEIGPGIGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           LTQ L    ARKVI +E D++  PIL++  S + N L +IQ DAL++D  K     N   
Sbjct: 61  LTQALCES-ARKVIAVELDKKLIPILEENLSAYDN-LRLIQGDALRLDLTKLIGEENDGH 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           PI++ ANLPY I + +L + + +        S+T++ Q+EV +R+ A   +  YG LS+ 
Sbjct: 119 PIKVAANLPYYITSPILMSLLESRAP---IRSITIMVQREVADRMRALPGTKSYGALSLA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             +  K  ++  ++   F P P V S V+           P     L ++ + AF  RRK
Sbjct: 176 VQYYAKIDLIRTVASSCFLPRPNVDSAVVKLTLRSETPENPEEKAFLFRLIRSAFATRRK 235

Query: 236 TLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           TL  +L       +   E  L + G+  N+R E LS+  F  ++ +L 
Sbjct: 236 TLANALSGGLSLPKERTEEALRELGLSENIRGEALSLSQFSALSALLR 283


>gi|238852850|ref|ZP_04643255.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4]
 gi|282852550|ref|ZP_06261892.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1]
 gi|311111301|ref|ZP_07712698.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22]
 gi|238834544|gb|EEQ26776.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4]
 gi|282556292|gb|EFB61912.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1]
 gi|311066455|gb|EFQ46795.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22]
          Length = 296

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/296 (33%), Positives = 155/296 (52%), Gaps = 21/296 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +   + + I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG G G+
Sbjct: 5   MPIASPVRT-QAIVNRYFMHAKKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIGPGIGS 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK--- 111
           LT+ LL  GA KV+  E DQ    ILK+         +  +R +++  D LK +F K   
Sbjct: 64  LTEQLLLAGA-KVLAYEVDQDLPEILKNELPQKIDGEELNSRFKLVMKDVLKANFTKDSD 122

Query: 112 -FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
            F +++ P++I+ANLPY I T ++FN I +D     + SLTL+ QKEV ER+ A   +  
Sbjct: 123 GFLDLNKPVKIVANLPYYITTPIIFNLIKSDL---DFSSLTLMMQKEVAERLVAIPKTKE 179

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEA 229
           YG L++    R    +  ++    F P PKV S V+   P    P          + +  
Sbjct: 180 YGPLTIAVQSRMNVELAEEVKSTSFMPRPKVDSAVVVLTPLTEKPNIDDYSFFDHVVKMC 239

Query: 230 FGKRRKTLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           F +RRKTL  +LK L       E +++  G++  +R E L++  F  + ++L D Q
Sbjct: 240 FAQRRKTLANNLKSLVRDKDMREKMINDLGLDLRVRPEELTLNQFVELAHLLKDQQ 295


>gi|326692423|ref|ZP_08229428.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Leuconostoc argentinum KCTC 3773]
          Length = 295

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 147/289 (50%), Gaps = 20/289 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N + + + IL+ Y +  KK  GQNFL DL++L  I E++       VIEIG G G LT
Sbjct: 7   IANPTRT-QAILTQYGLHAKKKFGQNFLTDLSVLHGIVETAEITADDYVIEIGPGIGALT 65

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118
           + L    A++V+  E D Q   +L +    + N + +++ D LKVD  +     F + + 
Sbjct: 66  EQLARR-AKRVLAFEIDPQMVAVLAETLQPYDN-VTVVEQDILKVDLAQMIATEFGVGAR 123

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPY I T +L   + ++     W+++ ++ Q+EV +R+ A   +  YG L++  
Sbjct: 124 VKVVANLPYYITTPILMQLLRSNIA---WDNIVVMMQREVADRLNAAVGTKAYGVLTLTV 180

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237
            +  +AT+  ++    F PSP V S V+   PH   I     E L  + + +F  RRK+L
Sbjct: 181 AYFAQATLAINVPATSFNPSPNVDSAVVKLTPHTPEIVVDQPERLFGVIKRSFSHRRKSL 240

Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILT 277
             ++ +  G++          L    I  ++RAE L +  F ++   L 
Sbjct: 241 WNNMIQTYGKDAETKEKITAALAATDIAPSIRAERLDLTQFTQLYLALR 289


>gi|161869639|ref|YP_001598806.1| dimethyladenosine transferase [Neisseria meningitidis 053442]
 gi|189028812|sp|A9M352|RSMA_NEIM0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|161595192|gb|ABX72852.1| dimethyladenosine transferase [Neisseria meningitidis 053442]
          Length = 259

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 127/261 (48%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV +R+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L    I 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|332519203|ref|ZP_08395670.1| dimethyladenosine transferase [Lacinutrix algicola 5H-3-7-4]
 gi|332045051|gb|EGI81244.1| dimethyladenosine transferase [Lacinutrix algicola 5H-3-7-4]
          Length = 270

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/264 (34%), Positives = 138/264 (52%), Gaps = 9/264 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           +++  KK++GQ+FL D +I ++IA++        V+EIG G G LT+ LL        VI
Sbjct: 9   HQVKAKKFLGQHFLEDESIAEQIADALSLEGYKKVLEIGPGMGVLTKYLLKKPV-TTYVI 67

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D +    LK+       R  I++ D LK D  + F    P  I  N PYNI T+++F 
Sbjct: 68  EIDTESVEYLKNNYLNLAPR--ILEKDFLKYDVSETFG-DEPFAISGNFPYNISTQIVFK 124

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +  +   FQKEV +RI +++ S  YG LSVLT     A  +F + P VF 
Sbjct: 125 TLELRDQIPEFSGM---FQKEVAQRICSKEGSKVYGILSVLTQAFYNAEYLFTVPPTVFN 181

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S V+      N  +PC  +   ++ ++AF +RRKTLR SLK     + L +A +
Sbjct: 182 PPPKVDSGVLKLTRKKNYSLPCDEKLFFRVVKQAFQQRRKTLRNSLKTFELSDNL-KANV 240

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
               R E L ++ F  +T ++ ++
Sbjct: 241 IFGKRPEQLDVQAFIELTTLIEND 264


>gi|59800723|ref|YP_207435.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA 1090]
 gi|293399578|ref|ZP_06643731.1| dimethyladenosine transferase [Neisseria gonorrhoeae F62]
 gi|62900452|sp|Q5F9W4|RSMA_NEIG1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|59717618|gb|AAW89023.1| putative dimethyladenosine transferase [Neisseria gonorrhoeae FA
           1090]
 gi|291610147|gb|EFF39269.1| dimethyladenosine transferase [Neisseria gonorrhoeae F62]
          Length = 259

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE+++ E +  ++N L D 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257


>gi|308388885|gb|ADO31205.1| putative dimethyladenosine transferase [Neisseria meningitidis
           alpha710]
 gi|325129842|gb|EGC52649.1| dimethyladenosine transferase [Neisseria meningitidis OX99.30304]
 gi|325202507|gb|ADY97961.1| dimethyladenosine transferase [Neisseria meningitidis M01-240149]
 gi|325207743|gb|ADZ03195.1| dimethyladenosine transferase [Neisseria meningitidis NZ-05/33]
          Length = 259

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 127/261 (48%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L    I 
Sbjct: 175 PKVDSAVVRMIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|325684673|gb|EGD26827.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 296

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 25/297 (8%)

Query: 3   MNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M N+   +  ++T  I++ Y +  KK +GQNFL+DL+ ++ I  ++G   G  V+E+G G
Sbjct: 1   MTNRIPIASPVRTAAIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111
            G+LT+ LL  G  KV   E DQ    IL +             R ++I  D LK DF  
Sbjct: 61  IGSLTEQLLLAGG-KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFAT 119

Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
               FF++S P++++ANLPY I T ++FN + +      + SLTL+ QKEV ER+ AQ  
Sbjct: 120 DLAGFFDLSKPVKVVANLPYYITTPIIFNLLESSL---DFTSLTLMMQKEVAERLAAQPG 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKIT 226
           S  YG LS+    +    +  ++    F P PKV S V+   P   P      +   ++ 
Sbjct: 177 SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +  F +RRKTL  +LK L       E LL    +    R E L+I DF RI+  + +
Sbjct: 237 KLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLGPRQRPEQLAISDFIRISQAIAE 293


>gi|116283278|gb|AAH05183.1| TFB1M protein [Homo sapiens]
          Length = 341

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 141/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   +            +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L+ L  E         LL  A I+  LR   LSI  F  + ++     D
Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCD 312


>gi|291397177|ref|XP_002714996.1| PREDICTED: Dimethyladenosine transferase 1, mitochondrial-like
           [Oryctolagus cuniculus]
          Length = 364

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 93/299 (31%), Positives = 142/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTDAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKLEKAFPESLKRHWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   +            +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIVKWLEHVSCRDGPFVYGRTPMTLTFQKEVAERLAATTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++  +      +F I    F P P+V   V+ F P + P I    + ++K+ Q AF
Sbjct: 194 SRLSIMAQYLCHVEHVFTIPGRAFVPKPEVDVGVVRFTPLIQPRIEQPFKLVEKVVQNAF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L  E         LLH A +E  LR   LSI  F  + +I     D
Sbjct: 254 QFRRKYCYRGLGMLFPEAQRLESTERLLHLADVEPTLRPRQLSIAHFRSLCDIYRRMCD 312


>gi|229823539|ref|ZP_04449608.1| hypothetical protein GCWU000282_00837 [Catonella morbi ATCC 51271]
 gi|229786983|gb|EEP23097.1| hypothetical protein GCWU000282_00837 [Catonella morbi ATCC 51271]
          Length = 296

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/284 (33%), Positives = 147/284 (51%), Gaps = 20/284 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            I+  + I  KK +GQNFL++  +L+K+ E+       TVIEIG G G LTQ L    A+
Sbjct: 15  EIMRRFDIQMKKSLGQNFLIEPRMLEKMIEAGQVDADTTVIEIGPGIGALTQYLAHH-AK 73

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPY 127
           +V+  E DQ+F  IL++  +   N ++++  D L VDF      +    S + ++ANLPY
Sbjct: 74  QVLAFEIDQRFVGILQETLADCDN-VQVVHQDILSVDFSSPEYAWLQDQSRLVVVANLPY 132

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I T ++   I ++     ++SL ++ QKEV ER+TA   +  YG LSV      ++ + 
Sbjct: 133 YITTPIIMRLIESNLP---FQSLVMMMQKEVAERMTAAVGTKAYGSLSVAIQLEMESEIA 189

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           F +  +VF P P V S V+       P+      E+ +   Q  F +RRKTL  +LK   
Sbjct: 190 FIVPKNVFIPKPNVDSAVLKLTRRPAPLVQVSDKEAFQAFVQAGFKQRRKTLWNNLKSAY 249

Query: 246 GENLL---------HQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             +LL          QAGIE N RAE+LS+ +F  +      ++
Sbjct: 250 VPDLLSEDSLRQVFDQAGIEPNRRAESLSLMEFADLEAAFEAHK 293


>gi|167830454|ref|NP_001108082.1| mitochondrial dimethyladenosine transferase 1 isoform 1 [Bos
           taurus]
 gi|124053396|sp|Q2TBQ0|TFB1M_BOVIN RecName: Full=Mitochondrial dimethyladenosine transferase 1;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|296483884|gb|DAA25999.1| mitochondrial dimethyladenosine transferase 1 isoform 1 [Bos
           taurus]
          Length = 341

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/299 (29%), Positives = 142/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  G  +++V+EKD +F P L+ +S   P +L I+  D L    E+ F         +  
Sbjct: 74  LNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+         +      + L FQKEV ER+TA   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTRMMLTFQKEVAERLTATTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++  +      +  I    F P P+V S V+HF P   P I    + ++K+ Q AF
Sbjct: 194 SRLSIMAQYLCDVQHILTIPGQAFVPKPEVDSGVVHFTPLTRPRIKQPFKLVEKVVQNAF 253

Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L  E         LL  A ++  LR   L++  F  + ++     D
Sbjct: 254 QFRRKYCHRGLGMLFPEARRLESTGKLLELADVDPTLRPTQLTVSHFKSLCDVYRKMCD 312


>gi|293189141|ref|ZP_06607867.1| dimethyladenosine transferase [Actinomyces odontolyticus F0309]
 gi|292821986|gb|EFF80919.1| dimethyladenosine transferase [Actinomyces odontolyticus F0309]
          Length = 328

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 17/285 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            +K I     I P K +GQNF+ D   ++KI  + G   G  V+E+G G G+LT  LL +
Sbjct: 36  EVKAISEALGIRPTKVLGQNFVHDAGTVRKIVAAGGVEAGDEVVEVGPGLGSLTLALLEV 95

Query: 69  GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRII 122
           GAR V  +E D      L    +   S+  +RL ++  DA ++     F  +  +P +++
Sbjct: 96  GAR-VRAVEIDPTLAAALPQTVRARMSEAADRLHVVTMDATEISGIDDFGVDWPAPTKLV 154

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L N + A    P  + + ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 155 ANLPYNVAVPVLLNMLEA---FPSVQGVVVMVQAEVADRLAAGPGSRTYGVPSVKASWYG 211

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQS 240
                  I   VF+P P V S ++       P        +  ++T  AFG+RRKTLR +
Sbjct: 212 SVERAGTIGRSVFWPVPGVDSALVRLTRLETPRGDDELRRATFEVTDVAFGQRRKTLRAA 271

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK   G     E LL  AGI+   R E LSI++F  +   + + +
Sbjct: 272 LKNWVGGPEASEALLSAAGIDPTRRGETLSIDEFVELGRAVIEAR 316


>gi|323465762|gb|ADX69449.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
           helveticus H10]
          Length = 294

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 149/281 (53%), Gaps = 20/281 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + I++ Y +  KK +GQNFL+D N +  I E++    G  VIEIG G G+LT+ LL  G
Sbjct: 13  TQAIINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAG 72

Query: 70  ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119
           A KV   E D     IL++        +   +R +++  D LK +F++    FF++S PI
Sbjct: 73  A-KVFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPI 131

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  S  YG L++   
Sbjct: 132 KVVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQ 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLR 238
                 +  ++  + F P PKV S+V+   P  N P     +    + +  F +RRKTL 
Sbjct: 189 TEMDVKVALEVKHNSFMPRPKVDSSVVVLTPLKNKPEIENRKHFVWVVKMCFSQRRKTLN 248

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
            +LK L       E L+ + G++  +R ENL+IE F  I  
Sbjct: 249 NNLKTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEIAR 289


>gi|261380520|ref|ZP_05985093.1| dimethyladenosine transferase [Neisseria subflava NJ9703]
 gi|284796774|gb|EFC52121.1| dimethyladenosine transferase [Neisseria subflava NJ9703]
          Length = 259

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 128/260 (49%), Gaps = 11/260 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLAK-KLNRLHVCEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F +I    +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNSIEGKKKIVGNLPYNISTPLLFRLS 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ AQ  +  YGRL V+  +     M+ ++ P  F P+
Sbjct: 118 EVAD---DVIDMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE+++ E +  ++N L
Sbjct: 235 PQDRAEHIAAEKYVALSNYL 254


>gi|319940876|ref|ZP_08015215.1| dimethyladenosine transferase [Sutterella wadsworthensis 3_1_45B]
 gi|319805758|gb|EFW02539.1| dimethyladenosine transferase [Sutterella wadsworthensis 3_1_45B]
          Length = 265

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/255 (34%), Positives = 133/255 (52%), Gaps = 9/255 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D + +++IA S     G  +IEIG G   LT+ +++L   +   +E
Sbjct: 8   GHHARKRFGQNFLHDRHWIERIARSIDPKPGDELIEIGPGQAALTREVVSLAGHE-TAVE 66

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   +  P  L +I+ DAL +D++        +R++ NLPYNI + LLF  
Sbjct: 67  IDRDLAAFLRTQFT--PEELTLIEADALTLDWKTVL-PGKRLRVLGNLPYNISSPLLFAL 123

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           + A            + QKEV +R+TA   S  YGRLSV+  +R     +FD+ P  F P
Sbjct: 124 LPAAG---RIIDQHFMLQKEVVDRMTAVPGSKTYGRLSVMLQYRYVMHKLFDVPPGAFVP 180

Query: 198 SPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKVTS+++  +P    N     +    +I   AF +RRK LR SL     E+ +  AG+
Sbjct: 181 APKVTSSIVRMVPKPVENLPAVDMSVFSEIVAAAFQQRRKMLRGSLSAFLDESSIISAGV 240

Query: 256 ETNLRAENLSIEDFC 270
           E   RAE LS++DF 
Sbjct: 241 EPTARAETLSVDDFV 255


>gi|329961933|ref|ZP_08299946.1| dimethyladenosine transferase [Bacteroides fluxus YIT 12057]
 gi|328531156|gb|EGF58006.1| dimethyladenosine transferase [Bacteroides fluxus YIT 12057]
          Length = 264

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/261 (34%), Positives = 143/261 (54%), Gaps = 8/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +  G+ V+E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDACPGLPVLEVGPGMGVLTQFLVK-KERPVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   +  ++  II+DD LK++ ++ F+  +P  +  N PYNI +++ F  +
Sbjct: 63  DFESVAYLREAYPELEDK--IIEDDFLKMNLQRLFD-GNPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +  HVF P 
Sbjct: 120 ENKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++      I  
Sbjct: 177 PKVKSAVIRMTRNDTRQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILF 236

Query: 258 NLRAENLSIEDFCRITNILTD 278
           N R E LS+++F  +TN + +
Sbjct: 237 NKRPEQLSVQEFIDLTNRVEE 257


>gi|91781824|ref|YP_557030.1| dimethyladenosine transferase [Burkholderia xenovorans LB400]
 gi|118600850|sp|Q145L1|RSMA_BURXL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91685778|gb|ABE28978.1| dimethyladenosine transferase [Burkholderia xenovorans LB400]
          Length = 277

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71
            H   I +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L+   A    
Sbjct: 10  RHQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     LK         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 70  PLHAVELDRDLIGRLKTKFGDL---LELHAGDALAFDFGSLAAPGDKASLRIVGNLPYNI 126

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+      +         + Q EV ER+ A+  +  + RLSV+  +R       D
Sbjct: 127 SSPLLFHL---TAFAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+      P     L ++   AF +RRK LR +L      
Sbjct: 184 VPPEAFNPPPKVDSAIVRMIPYELHELPPVDERVLGELVTAAFSQRRKMLRNTLAAYRDS 243

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                 G +   RAE++ + ++ R+  I+  ++
Sbjct: 244 VDFEGLGFDLQRRAEDVPVAEYVRVAQIVAASK 276


>gi|170017706|ref|YP_001728625.1| dimethyladenosine transferase [Leuconostoc citreum KM20]
 gi|226732593|sp|B1N079|RSMA_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|169804563|gb|ACA83181.1| Dimethyladenosine transferase [Leuconostoc citreum KM20]
          Length = 295

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 144/289 (49%), Gaps = 20/289 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N + + + IL+ Y +  KK  GQNFL DLN+L  I + +G      VIEIG G G LT
Sbjct: 7   IANPTRT-QAILNQYGLHAKKKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALT 65

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118
           + L    A+KV+  E D     +L +    + N +++I++D LKV+        F   + 
Sbjct: 66  EQLA-RSAKKVVAFEIDPHMVAVLAETLLPYDN-VKVIENDILKVNLAHVIATEFGEGAH 123

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++I+ANLPY I T +L   + A      W+++ ++ Q+EV +R+ A+  +  YG L++  
Sbjct: 124 VKIVANLPYYITTPILMQLLRAKI---SWDNIVVMMQREVADRLNAEIGTKAYGVLTLTI 180

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237
            +  +A +   +    F PSP V S V+   P +        + L  + + +F  RRK+L
Sbjct: 181 QYYAQAQLAIKVPASAFNPSPNVDSAVVMLTPIVPETVVDNPDKLFSVVKGSFAHRRKSL 240

Query: 238 RQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             ++ ++ G+         + L    I +++RAE LS+     +   L 
Sbjct: 241 WNNMLQMFGKQEDVKQRIQDALDSVNIASSIRAERLSLNQLTALYEALK 289


>gi|325136080|gb|EGC58690.1| dimethyladenosine transferase [Neisseria meningitidis M0579]
          Length = 259

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 127/261 (48%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     M+ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L    I 
Sbjct: 175 PKVDSAVVRIIPVKHRIGRADDFEYFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVDIN 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE+++ E +  ++N L 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLA 255


>gi|240016023|ref|ZP_04722563.1| dimethyladenosine transferase [Neisseria gonorrhoeae FA6140]
          Length = 259

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+SP  F P+
Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVSPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE+++ E +  ++N L D 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257


>gi|296199503|ref|XP_002747175.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial
           [Callithrix jacchus]
          Length = 343

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPSIREIIKLFRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTDAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNASVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFPESLKRPWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+ + +            +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLESMSCRDGPFVYGRTQMTLTFQKEVAERLAATTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +F I    F P P+V   V+HF P ++P I    + ++K+ Q  F
Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIHPKIQQPFKLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L  E         LL  A ++  LR   LSI  F  + ++     D
Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLESTGRLLELADVDPTLRPRQLSIPQFKSLCDVYRRMCD 312


>gi|218291058|ref|ZP_03495090.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239012|gb|EED06218.1| dimethyladenosine transferase [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 284

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 17/281 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
            +  +K +L  + +I KK  GQNFL+D  +L  I  +        V+E+G G G LT  L
Sbjct: 5   SAREVKELLRRHGVIAKKGYGQNFLVDARVLDGIVRAVEPDARTVVLEVGPGLGALTAAL 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRI 121
               A++V+ IEKD+   P+L ++ + H N  E++ +D LKVD         +    +  
Sbjct: 65  AER-AKRVVAIEKDESLRPVLDEVLAPHGNA-EVLYEDCLKVDLRALLAPRLDEGDRLVF 122

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
            ANLPY + T +LF  + +D          ++ QKEV +R+ A+     YG LS+   +R
Sbjct: 123 AANLPYYVTTPILFQVLESDLP---VSHAVVMVQKEVADRMVARPGGKDYGVLSIGVQYR 179

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            +   +F++ P  F P P V S V+       P        +L ++ + AFG RRKTL  
Sbjct: 180 GEVRRLFNVPPSAFLPQPGVESAVVEIDCDKRPALRAADEAALFRVVRAAFGTRRKTLEN 239

Query: 240 SLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           +L       +      +  AGI+   RAE LS+ DF R+T 
Sbjct: 240 ALAAGLGMPKEMVRQKVVAAGIDPGARAEQLSLADFVRLTE 280


>gi|109072294|ref|XP_001094657.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 2
           [Macaca mulatta]
          Length = 345

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNADVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   +            +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L  E         LL  A I+  LR   LSI  F  +  +     D
Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFRSLCEVYRRMCD 312


>gi|326202941|ref|ZP_08192808.1| dimethyladenosine transferase [Clostridium papyrosolvens DSM 2782]
 gi|325987018|gb|EGD47847.1| dimethyladenosine transferase [Clostridium papyrosolvens DSM 2782]
          Length = 285

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 145/292 (49%), Gaps = 25/292 (8%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M  NN S     I+  + +   K +GQNFL D  ++++I ++S        IEIG G G+
Sbjct: 1   MIKNNTS----EIIKKHGLKLTKALGQNFLTDFGVVQRIVDASDIDKDTLAIEIGPGVGS 56

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115
           +T+ L    A  V  IE D++  P L D  S + N + II +D +K D +          
Sbjct: 57  MTRELAERSAG-VAAIEIDKRLIPALNDNLSDYSN-VSIINEDIMKADIDAIIKKYKELY 114

Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
            +  ++++ANLPY I T ++  ++         + +  + QKEV ER+ +   +  YG L
Sbjct: 115 NAKSVKVVANLPYYITTPIIMRFLEE---VKGVDKMVFMVQKEVAERMVSGPGTKDYGAL 171

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232
           SV   + +   ++FD+ PH F P P+V ST+I       P     +     KI + +FG+
Sbjct: 172 SVAVQFYSNPKIVFDVPPHCFIPQPEVHSTIIGLDILSEPPVEVADKNLYFKIVKASFGQ 231

Query: 233 RRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RRKTL  +L   G         + ++ + G+  N+R E L++  F ++TN++
Sbjct: 232 RRKTLVNALSNSGFFNKNKEQIKQIIAEMGLNENIRGEVLTVAQFAQLTNLI 283


>gi|323359389|ref|YP_004225785.1| dimethyladenosine transferase [Microbacterium testaceum StLB037]
 gi|323275760|dbj|BAJ75905.1| dimethyladenosine transferase [Microbacterium testaceum StLB037]
          Length = 279

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/278 (31%), Positives = 139/278 (50%), Gaps = 19/278 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ + +   + P K +GQNF++D N ++KI + +G      V+EIG G G+LT  +L
Sbjct: 8   AAEIRRLATELDVTPTKKLGQNFVVDANTVRKIVQVAGVSASDRVVEIGPGLGSLTLAIL 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
             GA  V+ +E D +    L + ++ H     RL +I  DAL+VD         P  ++A
Sbjct: 68  ETGA-SVVAVEIDHRLAARLPETAAAHEVPAERLMVIDADALRVDE----LPGEPSVLVA 122

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN+   +L +++      P+  S  ++ Q EVGER+ A   S  YG  SV   W   
Sbjct: 123 NLPYNVSVPVLLHFLET---FPYLRSGVVMVQAEVGERLAAPPGSKVYGAPSVKAAWYGS 179

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL 241
             +   +S  VF+P P V S ++ F     P           +I   AF +RRK LRQ+L
Sbjct: 180 WRLAGTVSRQVFWPVPNVDSVLVAFDRDAEPRGTEEHRRRTFQIVDAAFQQRRKMLRQAL 239

Query: 242 KRLGG------ENLLHQAGIETNLRAENLSIEDFCRIT 273
             + G         L +AG++  LR E L+++D+ RI 
Sbjct: 240 SGVLGGTAAEASARLERAGVDPTLRGEQLTVDDYARIA 277


>gi|313123062|ref|YP_004033321.1| ribosomal RNA small subunit methyltransferase a [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312279625|gb|ADQ60344.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 296

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 99/297 (33%), Positives = 150/297 (50%), Gaps = 25/297 (8%)

Query: 3   MNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M N+   +  ++T  I++ Y +  KK +GQNFL+DL+ ++ I  ++G   G  V+E+G G
Sbjct: 1   MTNRIPIASPVRTAAIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111
            G+LT+ LL  G  KV   E D     IL +             R ++I  D LK DF  
Sbjct: 61  IGSLTEQLLLAGG-KVAAYEVDHSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFAT 119

Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
               FF++S P++++ANLPY I T ++FN + +      + SLTL+ QKEV ER+ AQ  
Sbjct: 120 DLAGFFDLSKPVKVVANLPYYITTPIIFNLLESSL---DFTSLTLMMQKEVAERLAAQPG 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKIT 226
           S  YG LS+    +    +  ++    F P PKV S V+   P   P      +   ++ 
Sbjct: 177 SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +  F +RRKTL  +LK L       E LL    +    R E L+I DF RI+  + +
Sbjct: 237 KLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLGPRQRPEQLAISDFIRISQAIAE 293


>gi|187922684|ref|YP_001894326.1| dimethyladenosine transferase [Burkholderia phytofirmans PsJN]
 gi|226729766|sp|B2SX63|RSMA_BURPP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|187713878|gb|ACD15102.1| dimethyladenosine transferase [Burkholderia phytofirmans PsJN]
          Length = 276

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 123/270 (45%), Gaps = 13/270 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71
            H   I +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L+   A    
Sbjct: 10  RHQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     LK         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 70  PLHAVELDRDLIGRLKTKFGGL---LELHAGDALAFDFGSLAAPGEKASLRIVGNLPYNI 126

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+     ++         + Q EV ER+ A+  +  + RLSV+  +R       D
Sbjct: 127 SSPLLFHL---TSFAHRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+      P     L ++   AF +RRK LR +L      
Sbjct: 184 VPPEAFNPPPKVDSAIVRMIPYELHELAPVDERVLGEVVTAAFSQRRKMLRNTLAAYRDS 243

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 G +   RAE++ ++++ R+  I+ 
Sbjct: 244 VDFEALGFDLQRRAEDVPVDEYVRVAQIVA 273


>gi|332524712|ref|ZP_08400911.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332108020|gb|EGJ09244.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 254

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 127/261 (48%), Gaps = 11/261 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K  P+K  GQ+FL D  I+  I ++     G  ++EIG G G +T  LL    R + V+E
Sbjct: 2   KHQPRKRFGQHFLADDAIIDAIVDAIDPQPGEAMVEIGPGLGAMTMPLLERIER-LTVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFN 136
            D+     L+ +       LE+++ D LKVDF         P+R++ NLPYNI T +LF+
Sbjct: 61  LDRDLAARLRRVKG-----LEVVEADVLKVDFAALAAAAGRPLRVVGNLPYNISTPILFH 115

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            + A            + QKEV +R+ A   S  YGRLSV+  WR     + D+ P  F 
Sbjct: 116 LLDAVEH---VVDQHFMLQKEVVDRMAAGPGSKDYGRLSVMLQWRYDIESVLDVPPEAFD 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S ++  +P   P       L ++   AF +RRK LR +L R   E    + G +
Sbjct: 173 PPPRVDSAIVRMLPLPAPEGVDAALLGELVTVAFSQRRKLLRHTLGRW-MEQRGAEVGFD 231

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE + + D+  +   + 
Sbjct: 232 LQRRAEEVPVADYLALARAVA 252


>gi|212278075|gb|ACJ23052.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVDNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE+++ E +  ++N L D 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257


>gi|91776504|ref|YP_546260.1| dimethyladenosine transferase [Methylobacillus flagellatus KT]
 gi|118600878|sp|Q1GZB8|RSMA_METFK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91710491|gb|ABE50419.1| dimethyladenosine transferase [Methylobacillus flagellatus KT]
          Length = 255

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 94/262 (35%), Positives = 137/262 (52%), Gaps = 11/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K + KK  GQNFL D  I+  + ++        ++EIG G G +TQ LL    + + V+E
Sbjct: 2   KHVAKKRFGQNFLTDRAIINSLIDAIAPQPQDCMVEIGPGLGAMTQPLLERL-QHLHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     ++    Q  ++L I   DALK +   F NIS  +R++ NLPYNI T +LF+ 
Sbjct: 61  IDRDIIQWMQGHYPQ--DKLTIYASDALKFN---FGNISDRLRVVGNLPYNISTPILFHL 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P    +  + QKEV ER+ A  +S  YGRLSV+  +R     +  + P  F P
Sbjct: 116 LDN---VPHIIDMHFMLQKEVVERMVAAPSSAAYGRLSVMLQYRLHMEYLLTVPPEAFDP 172

Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S  +  +P+   P P   E+L  +I   AF +RRKTLR +LK L  +      GI
Sbjct: 173 APKVESAFVRAVPYTVLPHPAKDEALLGRIVTAAFAQRRKTLRNTLKGLLDDTGFASLGI 232

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +  LRAEN++   F  I N L 
Sbjct: 233 DPQLRAENIAPAGFVAIANYLA 254


>gi|241759911|ref|ZP_04758011.1| dimethyladenosine transferase [Neisseria flavescens SK114]
 gi|241319919|gb|EER56315.1| dimethyladenosine transferase [Neisseria flavescens SK114]
          Length = 263

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L+     ++ V E 
Sbjct: 8   HKARKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLVK-KLNRLHVCEI 66

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F +I    +I+ NLPYNI T LLF   
Sbjct: 67  DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNSIEGKKKIVGNLPYNISTPLLFRLS 121

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ AQ  +  YGRL V+  +     M+ ++ P  F P+
Sbjct: 122 EVAD---DVIDMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPA 178

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 179 PKVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 238

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE+++ E +  ++N L
Sbjct: 239 PQDRAEHIAAEKYVELSNYL 258


>gi|227873154|ref|ZP_03991445.1| dimethyladenosine transferase [Oribacterium sinus F0268]
 gi|227840985|gb|EEJ51324.1| dimethyladenosine transferase [Oribacterium sinus F0268]
          Length = 312

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 139/287 (48%), Gaps = 16/287 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M     S     +L       KK  GQNFL+D ++L  I   +       VIEIG G G 
Sbjct: 14  MAKLVDSKETIAVLQRTNFQFKKQFGQNFLIDASVLDHIISYAKIQKEDLVIEIGPGIGT 73

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI- 119
           LT+ L    A +VI IE D +  PIL++  +   N   ++  D LKVDF +         
Sbjct: 74  LTEALCEH-AGQVIAIEIDDKLIPILEENLAAKEN-FRLLHQDVLKVDFTELLKEYPGFS 131

Query: 120 --RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             +++ANLPY I T +L + +          S+T++ QKEV ER+ A   +  YG LS+ 
Sbjct: 132 SVKVVANLPYYITTPILLSLLEKKLP---LSSITVMVQKEVAERMQAGPGTKDYGALSLA 188

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRK 235
             + +K  ++ ++ PH F P PKV+S VIH   +          E L K  + +F +RRK
Sbjct: 189 VQYYSKPEIVQEVPPHCFIPRPKVSSMVIHLSIYKESPVECENPEYLFKTIKASFMQRRK 248

Query: 236 TLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L       +   +++L       N+R E LS+++F  I++ L
Sbjct: 249 TLVNALSAGLSLDKEVIKSVLSALSYPENVRGETLSLDEFAEISDNL 295


>gi|295132335|ref|YP_003583011.1| dimethyladenosine transferase [Zunongwangia profunda SM-A87]
 gi|294980350|gb|ADF50815.1| dimethyladenosine transferase [Zunongwangia profunda SM-A87]
          Length = 279

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/257 (35%), Positives = 128/257 (49%), Gaps = 9/257 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           ++  KK++GQ+FL D NI KKI ++        V+EIG G G LT+ LL     +V V+E
Sbjct: 21  QVRAKKHLGQHFLKDENIAKKIGDTLSLSGYDYVLEIGPGMGVLTKFLL-QKDTEVHVVE 79

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    L     Q   R  I + D LK D  + F    P  +  N PYNI ++++F  
Sbjct: 80  IDAESVDYLNANYLQLHGR--IHEQDFLKYDLTQVFG-HKPFAVTGNFPYNISSQIVFKV 136

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P +  +   FQKEV +RI  ++ S  YG LSVLT     A  +F + P VF P
Sbjct: 137 LEMRDQIPEFSGM---FQKEVAQRICEKEGSKTYGILSVLTQAYYDAEYLFTVPPSVFNP 193

Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S V+      +  + C      +I +  F +RRKTLR SLK L   + L +  I 
Sbjct: 194 PPKVDSGVLKLTRKKDYHLKCNEALFFRIVKMGFQQRRKTLRNSLKSLNLPDTLREDAI- 252

Query: 257 TNLRAENLSIEDFCRIT 273
              R E LS +DF  +T
Sbjct: 253 FGKRPEQLSTQDFISLT 269


>gi|218129242|ref|ZP_03458046.1| hypothetical protein BACEGG_00819 [Bacteroides eggerthii DSM 20697]
 gi|317475217|ref|ZP_07934484.1| dimethyladenosine transferase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988620|gb|EEC54940.1| hypothetical protein BACEGG_00819 [Bacteroides eggerthii DSM 20697]
 gi|316908670|gb|EFV30357.1| dimethyladenosine transferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 261

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/260 (35%), Positives = 139/260 (53%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA +  +   + V+E+G G G LTQ LL  G R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIANTVDACPELPVLEVGPGMGVLTQFLLPKG-RTVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q  +   II+DD LK++ ++ F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPQLED--HIIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     +   +F +  HVF P 
Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++      +  
Sbjct: 177 PKVKSAVIRMTRNDTQQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+++F  +TN + 
Sbjct: 237 NKRPEQLSVQEFIELTNRVE 256


>gi|156415992|ref|NP_057104.2| dimethyladenosine transferase 1, mitochondrial [Homo sapiens]
 gi|74751555|sp|Q8WVM0|TFB1M_HUMAN RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=h-mtTFB; Short=h-mtTFB1; Short=hTFB1M;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|17389500|gb|AAH17788.1| Transcription factor B1, mitochondrial [Homo sapiens]
 gi|56204607|emb|CAI20506.1| transcription factor B1, mitochondrial [Homo sapiens]
 gi|119568075|gb|EAW47690.1| transcription factor B1, mitochondrial [Homo sapiens]
 gi|123982134|gb|ABM82896.1| transcription factor B1, mitochondrial [synthetic construct]
 gi|123996967|gb|ABM86085.1| transcription factor B1, mitochondrial [synthetic construct]
 gi|208967957|dbj|BAG73817.1| mitochondrial transcription factor B1 [synthetic construct]
 gi|311350098|gb|ADP92254.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350100|gb|ADP92255.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350102|gb|ADP92256.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350104|gb|ADP92257.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350106|gb|ADP92258.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350108|gb|ADP92259.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350110|gb|ADP92260.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350112|gb|ADP92261.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350114|gb|ADP92262.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350116|gb|ADP92263.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350118|gb|ADP92264.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350120|gb|ADP92265.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350122|gb|ADP92266.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350124|gb|ADP92267.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350126|gb|ADP92268.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350128|gb|ADP92269.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350130|gb|ADP92270.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350132|gb|ADP92271.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350134|gb|ADP92272.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350136|gb|ADP92273.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350138|gb|ADP92274.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350140|gb|ADP92275.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350142|gb|ADP92276.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350144|gb|ADP92277.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350146|gb|ADP92278.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350148|gb|ADP92279.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350150|gb|ADP92280.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350152|gb|ADP92281.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350154|gb|ADP92282.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350156|gb|ADP92283.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350158|gb|ADP92284.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350160|gb|ADP92285.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350162|gb|ADP92286.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350164|gb|ADP92287.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350166|gb|ADP92288.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350168|gb|ADP92289.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350170|gb|ADP92290.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350172|gb|ADP92291.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350174|gb|ADP92292.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
 gi|311350176|gb|ADP92293.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
          Length = 346

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 141/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   +            +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L+ L  E         LL  A I+  LR   LSI  F  + ++     D
Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCD 312


>gi|161506815|ref|YP_001576769.1| dimethyladenosine transferase [Lactobacillus helveticus DPC 4571]
 gi|172048354|sp|A8YX55|RSMA_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|160347804|gb|ABX26478.1| Dimethyladenosine transferase [Lactobacillus helveticus DPC 4571]
          Length = 294

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 97/278 (34%), Positives = 149/278 (53%), Gaps = 20/278 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I++ Y +  KK +GQNFL+D N +  I E++    G  VIEIG G G+LT+ LL  GA K
Sbjct: 16  IINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGA-K 74

Query: 73  VIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122
           V   E D     IL++        +   +R +++  D LK +F++    FF++S PI+++
Sbjct: 75  VFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIKVV 134

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  S  YG L++      
Sbjct: 135 ANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQTEM 191

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSL 241
              +  +++ + F P PKV S+V+   P  N P     +    + +  F +RRKTL  +L
Sbjct: 192 DVKVALEVNHNSFMPRPKVDSSVVVLTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNNNL 251

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           K L       E L+ + G++  +R ENL+IE F  I  
Sbjct: 252 KTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEIAR 289


>gi|114609907|ref|XP_001143221.1| PREDICTED: transcription factor B1, mitochondrial isoform 2 [Pan
           troglodytes]
 gi|114609909|ref|XP_001143300.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 3
           [Pan troglodytes]
          Length = 346

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   +            +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L+ L  E         LL  A I+  LR   LSI  F  +  +     D
Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCEVYRKMCD 312


>gi|271969807|ref|YP_003344003.1| dimethyladenosine transferase [Streptosporangium roseum DSM 43021]
 gi|270512982|gb|ACZ91260.1| dimethyladenosine transferase [Streptosporangium roseum DSM 43021]
          Length = 281

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 130/284 (45%), Gaps = 16/284 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M++      ++ +     I P K +GQNF++D   +++I   +G      VIE+G G G+
Sbjct: 1   MSLLGPV-EIRNLAEKLDIRPTKKLGQNFVIDGGTVRRIVRVAGLRPDDVVIEVGPGLGS 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           LT  LL    R V+ +E D      L     + + +   RL ++  DA++V  E      
Sbjct: 60  LTLALLPE-VRGVVAVEIDPVLAAQLPLTVAERAPEFAERLTVVLADAMRVLPEDL-PED 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P  ++ANLPYN+   ++ + +      P   ++ ++ Q EV +R+ A   S  YG  SV
Sbjct: 118 LPTALVANLPYNVSVPVVLHLLET---LPSLRTILIMVQSEVADRLAAAPGSKIYGIPSV 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRK 235
              W         +   VF+P P V S ++       P      E +  +   AF +RRK
Sbjct: 175 KAAWYADVRRAGPVGRTVFWPVPNVDSGLVAMTRREPPSTRAAREDVFAVVDAAFAQRRK 234

Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           TLR +L    G     E  L  AGI+ + R E L++EDF RI  
Sbjct: 235 TLRAALASWAGTPAAAEQALRAAGIDPSERGEQLTVEDFARIAE 278


>gi|322419457|ref|YP_004198680.1| dimethyladenosine transferase [Geobacter sp. M18]
 gi|320125844|gb|ADW13404.1| dimethyladenosine transferase [Geobacter sp. M18]
          Length = 277

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 141/278 (50%), Gaps = 17/278 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +I  KK  GQNFL+D N+L +I           ++E+G G G L+++L   GAR V  +E
Sbjct: 5   RIKAKKEFGQNFLVDDNVLTRIVSCVAPGTEDCILEVGPGRGALSRLLAASGARFV-AVE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP---IRIIANLPYNIGTRLL 134
            D+   P L    + + +R+EI   D L+VD  +     +P    ++ ANLPYNI +++L
Sbjct: 64  WDRDLIPFLNSEFAGN-DRVEIGHGDILRVDLHQILTTRAPGRKWKVAANLPYNISSQVL 122

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F ++        +E L L+ QKEVG+R+TA      YG L+VL          F + P  
Sbjct: 123 FKFMED---CDLFEGLVLMLQKEVGDRLTAPPGCKDYGALTVLLRLHFDIRREFIVKPGS 179

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248
           F P PKV S V+ F P   P       E  +++ + AF +RRKTL  SL+  G ++    
Sbjct: 180 FRPIPKVDSAVLSFTPLPAPRVEVGDEELFRRLVKGAFNQRRKTLLNSLRSAGFDDSDGS 239

Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
               L +  I+   R E LS+E+F  ++  L   + +A
Sbjct: 240 LSAALSRCNIDGLRRGETLSLEEFAALSRDLYPGKSLA 277


>gi|260102234|ref|ZP_05752471.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075]
 gi|260083975|gb|EEW68095.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075]
          Length = 291

 Score =  262 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 97/278 (34%), Positives = 150/278 (53%), Gaps = 20/278 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I++ Y +  KK +GQNFL+D N +  I E++    G  VIEIG G G+LT+ LL  GA K
Sbjct: 16  IINRYFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGA-K 74

Query: 73  VIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPIRII 122
           V   E D     IL++        +   +R +++  D LK +F++    FF++S PI+++
Sbjct: 75  VFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIKVV 134

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  S  YG L++      
Sbjct: 135 ANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGSKEYGPLTISVQTEM 191

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSL 241
              +  +++ + F P PKV S+V+   P  N P     +    + +  F +RRKTL  +L
Sbjct: 192 DVKVALEVNHNSFMPRPKVDSSVVVLTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNNNL 251

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           K L       E L+ + G++  +R ENL+IE F  I+ 
Sbjct: 252 KTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEISR 289


>gi|323342302|ref|ZP_08082534.1| dimethyladenosine transferase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463414|gb|EFY08608.1| dimethyladenosine transferase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 270

 Score =  262 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 143/280 (51%), Gaps = 17/280 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N S S+  +L  Y+   KK+ GQNF++D ++++ IA  SG   G TV+EIG G G L
Sbjct: 3   TIANYSVSM-ELLRRYERRAKKHFGQNFIIDPSVVRNIASQSG--AGGTVLEIGPGLGAL 59

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           TQ L      KVI  E D     IL +   ++ N + +I  D LK D   +   + PI +
Sbjct: 60  TQQLAETY-DKVIAYEIDPHMVEILNETLEEYDN-VNVIHQDFLKADLSMY---TEPITV 114

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
            ANLPY I T +LF  +  D       ++T++ QKE+ +R+ A   +  Y  LS+   + 
Sbjct: 115 CANLPYYITTPILFRLMELD-----IVAMTIMVQKEIADRLGASPQTKDYSSLSIQMQYY 169

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
                +  +S   F P P V S VI   P    +P   ++  +  ++ F  RRKTL  +L
Sbjct: 170 FDVKTVLKVSKESFHPRPGVESIVIKLTPKHQTMPYDEKTFFEFVKKCFQFRRKTLVNNL 229

Query: 242 KRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           K +  +     +L   G+ETN+RA+ L+ +D+ R+   L 
Sbjct: 230 KTIDKDVDYATVLESLGLETNIRADYLTFDDYIRLYGALY 269


>gi|82701652|ref|YP_411218.1| dimethyladenosine transferase [Nitrosospira multiformis ATCC 25196]
 gi|119365040|sp|Q2YBP5|RSMA_NITMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|82409717|gb|ABB73826.1| dimethyladenosine transferase [Nitrosospira multiformis ATCC 25196]
          Length = 259

 Score =  262 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 92/261 (35%), Positives = 131/261 (50%), Gaps = 11/261 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  P++  GQNFL+D   +  I  +        ++EIG G G LTQ LL      + V+E
Sbjct: 2   QHTPRRRFGQNFLVDSQTVTDIVHALHPRREDVMVEIGPGLGALTQPLLQSLEH-LHVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L++  S    RL + + DAL+ DF         +R++ NLPYNI T LLF+ 
Sbjct: 61  IDRDIVKRLRNEFSAK--RLTVHEGDALEFDFSSL---GESLRVVGNLPYNISTPLLFHL 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                +      +  + QKEV  R+ A+ ++  YGRLSV+   R +   +F + P  F P
Sbjct: 116 ---SRFTDHLRDMHFMLQKEVVARMVAKPSTSDYGRLSVMLQCRFEMEQLFIVPPECFHP 172

Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S V+  IP   P I    E L   I   AF +RRK LR +L+         + GI
Sbjct: 173 PPKVQSAVVRMIPLKKPLIEASQEKLFAEIVSAAFSQRRKILRNTLRDYLTGEDYLKLGI 232

Query: 256 ETNLRAENLSIEDFCRITNIL 276
           ++NLRAENLSI  +  ITN  
Sbjct: 233 DSNLRAENLSITQYVAITNYF 253


>gi|255994696|ref|ZP_05427831.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989]
 gi|255993409|gb|EEU03498.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989]
          Length = 285

 Score =  262 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 15/278 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++K +   + I P K  GQNFL+D NI++KI +S+G      V+EIG G G LT+ +   
Sbjct: 12  TIKQLCDCFDIRPNKRYGQNFLIDYNIVQKITDSAGLTSSDRVLEIGPGIGTLTREISK- 70

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A  V+V+E D++  P+L    S   N ++I+  D  K +    F     +++I NLPY 
Sbjct: 71  KAGSVVVVEVDKKLIPVLDSTLSHCSN-IKIVNQDIFKYNVGDDFL--DTVKVIGNLPYY 127

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++   +      P    + ++ QKEV +R  A++ S     +++   + ++   +F
Sbjct: 128 ITTPIVMWLLEE---VPQATEIVIMMQKEVAKRFAAKQGSRDSSAVTLAVQYYSEIEELF 184

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           D+S H F+P+PKV STV+    H          + L +  +++F KRRKTL  SL  + G
Sbjct: 185 DVSKHCFYPAPKVDSTVVRLKRHTENPVAVKSEKLLFECIKKSFEKRRKTLINSLFGING 244

Query: 247 EN------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
                   +L++AGI+  LRAENL+++ +  I N++ D
Sbjct: 245 LEKERLVKILNEAGIDPRLRAENLTLQQYAGIANLIYD 282


>gi|42518291|ref|NP_964221.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533]
 gi|62900557|sp|Q74LI0|RSMA_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|41582575|gb|AAS08187.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533]
 gi|329666601|gb|AEB92549.1| dimethyladenosine transferase [Lactobacillus johnsonii DPC 6026]
          Length = 296

 Score =  262 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 99/296 (33%), Positives = 154/296 (52%), Gaps = 21/296 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +   + + I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG G G+
Sbjct: 5   MPIASPVRT-QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGS 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKV----DFE 110
           LT+ LL  GA KV+  E DQ    IL +         +  +R +++  D LK     D +
Sbjct: 64  LTEQLLLAGA-KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDND 122

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
            F ++S  ++I+ANLPY I T ++FN I +D     + SLTL+ QKEV ER+ A+  +  
Sbjct: 123 GFLDLSKSVKIVANLPYYITTPIIFNLIKSDL---DFSSLTLMMQKEVAERLVAKPKTKE 179

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEA 229
           YG LS+    R    +  ++    F P PKV S V+   P L             + +  
Sbjct: 180 YGPLSIAVQSRMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYAFFDHVVKMC 239

Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           F +RRKTL  +LK L       E L++  G++  +R E L++  F ++ ++L D Q
Sbjct: 240 FAQRRKTLANNLKTLIKDKDEREKLINDLGLDVRVRPEELTLNQFVQLAHLLKDRQ 295


>gi|149369569|ref|ZP_01889421.1| dimethyladenosine transferase [unidentified eubacterium SCB49]
 gi|149356996|gb|EDM45551.1| dimethyladenosine transferase [unidentified eubacterium SCB49]
          Length = 284

 Score =  262 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/261 (34%), Positives = 128/261 (49%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D  + + IAE+        VIEIG G G LT+ LL      ++ ++ 
Sbjct: 26  VRAKKHLGQHFLTDEGVARDIAETLTHKGYKNVIEIGPGTGVLTKYLLEKDIN-LVAMDL 84

Query: 79  DQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D      L+   + +PN  L+I++ D L+ D + +F       I  N PYNI T+++F  
Sbjct: 85  DSDSIAYLE---AHYPNDNLQILEADFLREDLQDYFGTEQ-YAITGNFPYNISTQIVFKA 140

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P +  +   FQKEV  RI A   S  YG LSVL      A  +F + P VF P
Sbjct: 141 LENKEQVPEFTGM---FQKEVAMRICANHGSKTYGILSVLAQAFYDAEYLFTVPPTVFNP 197

Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S V+      +  +PC    L K+ + AF +RRKTLR SLK       L +  I 
Sbjct: 198 PPKVDSGVLRLTRKASLELPCSEAFLYKVVKTAFQQRRKTLRNSLKTFEISEKLKEDTI- 256

Query: 257 TNLRAENLSIEDFCRITNILT 277
              R E LS+  F  +T  L 
Sbjct: 257 FGQRPEQLSVAQFIALTTKLE 277


>gi|154509599|ref|ZP_02045241.1| hypothetical protein ACTODO_02132 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799233|gb|EDN81653.1| hypothetical protein ACTODO_02132 [Actinomyces odontolyticus ATCC
           17982]
          Length = 328

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 137/285 (48%), Gaps = 17/285 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            +K I     I P K +GQNF+ D   ++KI  + G   G  VIE+G G G+LT  LL +
Sbjct: 36  EVKAISEALGIRPTKVLGQNFVHDAGTVRKIVAAGGVEAGDEVIEVGPGLGSLTLALLEV 95

Query: 69  GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRII 122
           GAR V  +E D      L    +   S+  +RL ++  DA ++     F  +  +P +++
Sbjct: 96  GAR-VRAVEIDPTLAAALPQTVRARMSEAADRLHVVTMDATEISGIDDFGVDWPAPTKLV 154

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L N + A    P  + + ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 155 ANLPYNVAVPVLLNMLEA---FPSVQGVVVMVQAEVADRLAAGPGSRTYGVPSVKASWYG 211

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQS 240
                  I   VF+P P V S ++       P        +  + T  AFG+RRKTLR +
Sbjct: 212 SVERAGTIGRSVFWPVPGVDSALVRLTRLETPRGDDELRRATFEATDVAFGQRRKTLRAA 271

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           LK   G     E LL  AGI+   R E LSI++F  +   + + +
Sbjct: 272 LKNWAGGPEASEALLSAAGIDPTRRGETLSIDEFVELGRAVIEAR 316


>gi|167629323|ref|YP_001679822.1| dimethyladenosine transferase [Heliobacterium modesticaldum Ice1]
 gi|167592063|gb|ABZ83811.1| dimethyladenosine transferase [Heliobacterium modesticaldum Ice1]
          Length = 285

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 18/283 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L+  LS Y I  KK +GQNFL D   + +I  ++    G  V+EIG GP  LT+ L   
Sbjct: 4   ELRQNLSRYGIRAKKGLGQNFLSDPVYVGRIIAAAELAAGDVVVEIGPGPATLTRDLAEA 63

Query: 69  --GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIA 123
                KVI +E D++  P+L D+   +P ++EI+  DAL+VD++          P  ++A
Sbjct: 64  VGPGGKVIAVEVDERLRPLLDDLCRDYP-QVEILWQDALQVDYDAATQPWRGDKPFVLVA 122

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I T +L   +           L ++ QKEV +R+ A      YG LSV+  +   
Sbjct: 123 NLPYYITTPILMRLLEGR---FSVSRLVVMVQKEVADRMLAPAGHSDYGALSVVIQYYCA 179

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL 241
            +++  + P  F P PKV+S V+       P        +  ++ + AF +RRKTL  +L
Sbjct: 180 PSLVTKVPPGAFIPPPKVSSAVVRLDRRATPPVAVVDEAAFFRVVRAAFNQRRKTLLNAL 239

Query: 242 KRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
             LG           L  AG++   R E L++++F  + + L 
Sbjct: 240 GALGLALNKEEMARRLTAAGVDPGRRGETLNLQEFANVADALY 282


>gi|158259991|dbj|BAF82173.1| unnamed protein product [Homo sapiens]
          Length = 346

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II  LP+++ T L+  W+   +            +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGKLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L+ L  E         LL  A I+  LR   LSI  F  + ++     D
Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCD 312


>gi|42519999|ref|NP_965914.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034443|ref|ZP_01314444.1| hypothetical protein Wendoof_01000753 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|62900551|sp|Q73IR3|RSMA_WOLPM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|42409736|gb|AAS13848.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 286

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 109/264 (41%), Positives = 151/264 (57%), Gaps = 8/264 (3%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  + + PKK +GQNF+L   I KKI   +GSL+   VIEIG G G LT+ +L    + +
Sbjct: 17  MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 76

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           + IEKD+        + ++H  +  II+ DAL +  E+   I  P+++IANLPYNI   L
Sbjct: 77  LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHIIEEEL--IERPVKVIANLPYNISVAL 134

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
              W+ +     F+ SLTL+FQKEV +RITA+ NS  YG LSVL+         FDI P 
Sbjct: 135 FLKWLDS---IKFFTSLTLMFQKEVADRITARPNSKDYGPLSVLSQLLCDIKKEFDIEPK 191

Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLL 250
            FFP PK+ S+VI   P   P     LE+L K+ +  F +RRK LR SL+ +    E +L
Sbjct: 192 EFFPRPKIHSSVITVNPLPTPKFVVNLETLIKLIRAVFAQRRKMLRNSLQNITNHAETVL 251

Query: 251 HQAGIETNLRAENLSIEDFCRITN 274
             A +  N R ENL+IE FC + N
Sbjct: 252 ENAKLSGNERPENLTIEQFCLLAN 275


>gi|295692081|ref|YP_003600691.1| dimethyladenosine transferase [Lactobacillus crispatus ST1]
 gi|295030187|emb|CBL49666.1| Dimethyladenosine transferase [Lactobacillus crispatus ST1]
          Length = 294

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 98/295 (33%), Positives = 150/295 (50%), Gaps = 23/295 (7%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT N         + I++ Y +  KK +GQNFL+D   +  I E++G      VIEIG G
Sbjct: 1   MTNNIPIGSPVRTQAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111
            G+LT+ LL  GA KV   E D     IL++            +R +I+  D LK +F++
Sbjct: 61  IGSLTEQLLLAGA-KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKILLKDVLKANFKE 119

Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
               FF+ + PI+++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ AQ  
Sbjct: 120 DIGDFFDFTKPIKVVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPG 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKIT 226
           S  YG L++      K  +   +  + F P PKV S+V+   P    P     +    + 
Sbjct: 177 SKDYGPLTISVQTEMKVKLALQVGRNSFMPRPKVDSSVVVLTPLKEKPAIEDRKHFIWVV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +  F +RRKTL  +LK L       + L+ + G++  +R E+L+IE F +I   +
Sbjct: 237 KMCFSQRRKTLNNNLKSLLPDKTERDKLITELGVDPRIRPEDLTIEQFIKIAKFI 291


>gi|186475168|ref|YP_001856638.1| dimethyladenosine transferase [Burkholderia phymatum STM815]
 gi|226729765|sp|B2JCX3|RSMA_BURP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|184191627|gb|ACC69592.1| dimethyladenosine transferase [Burkholderia phymatum STM815]
          Length = 276

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 85/274 (31%), Positives = 127/274 (46%), Gaps = 18/274 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+N S        H     +K  GQNFL+DL I+  I +      G  ++EIG G G LT
Sbjct: 1   MSNSSSR-----QHQGHFARKRFGQNFLVDLGIIDSIVDVIRPQRGERMVEIGPGLGALT 55

Query: 63  QMLLTLGA---RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--S 117
           + L+   A     +  +E D+     LK       N LE+ + DAL  DF          
Sbjct: 56  EPLVERLATPEAPLHAVELDRDLIGRLKKKFG---NLLELHEGDALAFDFGSLAGEGDKP 112

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            +RI+ NLPYNI + LLF+     T+         + Q EV ER+ A+  S  + RLSV+
Sbjct: 113 TLRIVGNLPYNISSPLLFHL---ATFAERVIDQHFMLQNEVVERMVAEPGSKAFSRLSVM 169

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLE-SLKKITQEAFGKRRK 235
             +R     + D+ P  F P PKV S ++  IP+  + +P   E  L ++   AF +RRK
Sbjct: 170 LQYRYVIDKLLDVPPESFQPPPKVDSAIVRMIPYAPHELPAVDEIKLGEVVTAAFSQRRK 229

Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269
            LR +L            G +   RAE++ + ++
Sbjct: 230 MLRNTLSTYRDSVDFEALGFDLQRRAEDVPVAEY 263


>gi|297180114|gb|ADI16337.1| dimethyladenosine transferase (rRNA methylation) [uncultured
           bacterium HF130_01F24]
          Length = 277

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 93/279 (33%), Positives = 148/279 (53%), Gaps = 10/279 (3%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M  + K   L + LSH     +K  GQNFL D +++ KI  +        ++EIG G G 
Sbjct: 1   MRRDAKLPRLASGLSH---QIRKRFGQNFLHDKHVISKILGAVSPTKNDHILEIGPGFGA 57

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           +T+ L   GA K+  IE D      LK    ++ + + I+Q DALK D        + +R
Sbjct: 58  ITKQLAQSGA-KLDCIELDADLAASLKTEYREYKS-VNILQADALKFDLNSIATKKNSLR 115

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ NLPYNI T L+F+ + +       + +T + Q EV +R+ ++  S  YGRL ++  +
Sbjct: 116 VVGNLPYNISTPLIFHLLKS---SYLIKDMTFMLQLEVIQRMVSKVGSKSYGRLGLMVQY 172

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR 238
             +   +F+I+   F P PKV S +    PH +P       E LK + Q AF +RRKT+R
Sbjct: 173 YCEIEHLFNIASDAFVPRPKVVSALARLKPHKSPTVTAKDPECLKTVIQTAFNQRRKTIR 232

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            SL  L  E+LL +  +   LR ENL+++D+ RI++ ++
Sbjct: 233 NSLSTLVSESLLEEIPVNNKLRPENLTLQDYVRISDAIS 271


>gi|170691411|ref|ZP_02882576.1| dimethyladenosine transferase [Burkholderia graminis C4D1M]
 gi|170143616|gb|EDT11779.1| dimethyladenosine transferase [Burkholderia graminis C4D1M]
          Length = 276

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 13/270 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71
            H   I +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L+   A    
Sbjct: 10  RHQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     LK+   +    LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 70  PLHAVELDRDLIGRLKNKFGEL---LELHAGDALAFDFGSLAAPGDAPSLRIVGNLPYNI 126

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R       D
Sbjct: 127 SSPLLFHLVS---FAPRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+      P     L ++   AF +RRK LR +L      
Sbjct: 184 VPPEAFQPPPKVDSAIVRMIPYAPHELTPVDERVLGEVVTAAFSQRRKMLRNTLAAFRDR 243

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 G +   RAE++ + ++ R+  I+ 
Sbjct: 244 VDFEAIGFDLQRRAEDVPVAEYVRVAQIVA 273


>gi|319638521|ref|ZP_07993283.1| dimethyladenosine transferase [Neisseria mucosa C102]
 gi|317400270|gb|EFV80929.1| dimethyladenosine transferase [Neisseria mucosa C102]
          Length = 259

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 86/260 (33%), Positives = 126/260 (48%), Gaps = 11/260 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L       + V E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQPDDIVIEIGPGLAAITEPLAK-KLNCLHVCEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F +I    +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVRRLKTL--PFADKLVIHEGDVLQFD---FNSIEGKKKIVGNLPYNISTPLLFRLS 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ AQ  +  YGRL V+  +     M+ ++ P  F P+
Sbjct: 118 EVAD---DVIDMHFMLQKEVVERMVAQPKTNDYGRLGVMLQYFFDMEMLIEVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I      E   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKAEDFEHFAKLVKLAFHQRRKTIRNNLKELADDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE+++ E +  ++N L
Sbjct: 235 PQDRAEHIAAEKYVELSNYL 254


>gi|325955928|ref|YP_004286538.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Lactobacillus acidophilus 30SC]
 gi|325332493|gb|ADZ06401.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Lactobacillus acidophilus 30SC]
 gi|327182763|gb|AEA31210.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Lactobacillus amylovorus GRL 1118]
          Length = 294

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 20/280 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + I++ Y +  KK +GQNFL+D   +  I ES+    G  VIEIG G G+LT+ LL  G
Sbjct: 13  TRAIINRYFVKAKKNLGQNFLVDQAAILGIVESADIQPGDQVIEIGPGIGSLTEQLLLAG 72

Query: 70  ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119
           A KV   E D     IL +        +    R ++I  D LK +FE+    FF++S PI
Sbjct: 73  A-KVFAYEVDDSLPEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAVFFDMSKPI 131

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  +  YG L++   
Sbjct: 132 KVVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGNKEYGPLTISVQ 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLR 238
                 +  ++    F P PKV S V+   P    P     +    + +  F +RRKTL 
Sbjct: 189 TEMNVKLALEVKSSSFMPRPKVDSAVVVLTPLAEKPAINDRKHFIWVVKMCFSQRRKTLN 248

Query: 239 QSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRIT 273
            +LK L  +N     L+ + G++  +R E+L+IE F +I 
Sbjct: 249 NNLKTLIPDNDQRAALIKELGVDPRVRPEDLTIEQFIKIA 288


>gi|294669503|ref|ZP_06734570.1| hypothetical protein NEIELOOT_01401 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308416|gb|EFE49659.1| hypothetical protein NEIELOOT_01401 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 262

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ VIE 
Sbjct: 4   HKARKRFGQNFLQDTRIIADIVNAVRPQAEDVVIEIGPGLAAITEPLAK-KLNRLHVIEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F +I+   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVGRLKTL--PFADKLVIHEGDVLQFD---FKSIAGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFEPA 174

Query: 199 PKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP  + I    +     K+ + AF +RRKT+R +LK L G++ L   GI 
Sbjct: 175 PKVDSAVVRMIPVKHRIGKADDFGHFAKVVKLAFHQRRKTIRNNLKELAGDDDLQAVGIN 234

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE+++ E +  ++N L
Sbjct: 235 PQDRAEHIAPEKYVELSNYL 254


>gi|29349451|ref|NP_812954.1| dimethyladenosine transferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570180|ref|ZP_04847589.1| dimethyladenosine transferase [Bacteroides sp. 1_1_6]
 gi|298384949|ref|ZP_06994508.1| dimethyladenosine transferase [Bacteroides sp. 1_1_14]
 gi|33516931|sp|Q8A0H8|RSMA_BACTN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|29341360|gb|AAO79148.1| dimethyladenosine transferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840561|gb|EES68643.1| dimethyladenosine transferase [Bacteroides sp. 1_1_6]
 gi|298262093|gb|EFI04958.1| dimethyladenosine transferase [Bacteroides sp. 1_1_14]
          Length = 267

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 91/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + V+E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPVLEVGPGMGVLTQFLVK-KDRLVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P 
Sbjct: 120 ENKDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++         
Sbjct: 177 PKVKSAVIRMTRNDTKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236

Query: 258 NLRAENLSIEDFCRITNILTD 278
           N R E LS+E+F  +TN + +
Sbjct: 237 NKRPEQLSVEEFISLTNQVEE 257


>gi|118587313|ref|ZP_01544740.1| dimethyladenosine transferase [Oenococcus oeni ATCC BAA-1163]
 gi|118432302|gb|EAV39041.1| dimethyladenosine transferase [Oenococcus oeni ATCC BAA-1163]
          Length = 292

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 155/280 (55%), Gaps = 16/280 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL+ Y +   K +GQNFL+DLN+L++I + +      TVIEIG G G+LT+ L    
Sbjct: 13  TRAILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-A 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V+  E D++  PIL +    + N +EI+  D LK DF   F  +  ++I+ANLPY I
Sbjct: 72  AKQVVAYEIDKKLIPILSETLRPYKN-VEIVNRDILKADFS-IFAKNQSLKIVANLPYYI 129

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +++      ++S+T++ QKEV  R+ A   S  YG LS+   +R    ++  
Sbjct: 130 TTPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILP 186

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           ++   F PSP V S V+   P  N       E+L KI + +F  RRK+L  +L    G+N
Sbjct: 187 VTRKSFMPSPNVDSAVVQLTPKENFQSFPHEEALFKIIKASFAHRRKSLVNNLLYYFGKN 246

Query: 249 L---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279
                     + + G + N+R E L++E++ ++ N L++N
Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286


>gi|194333711|ref|YP_002015571.1| dimethyladenosine transferase [Prosthecochloris aestuarii DSM 271]
 gi|226732609|sp|B4S787|RSMA_PROA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|194311529|gb|ACF45924.1| dimethyladenosine transferase [Prosthecochloris aestuarii DSM 271]
          Length = 261

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 138/263 (52%), Gaps = 11/263 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H +I  KK +GQNFL D N ++KI +S+    G  V+EIG G G LT  +L +      
Sbjct: 7   KHTEIAVKKKLGQNFLTDRNTIRKIVQSAEIQPGDHVVEIGPGFGALTSAILEVCP-SFT 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +EKD++    +++   ++P+ + +++ D L+VDF K      P++++ N+PY+I + +L
Sbjct: 66  AVEKDRKLADFIRE---EYPS-VNLVESDILEVDFAKLAEEG-PVKVMGNIPYSITSPIL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +   +      S TL+ Q EV  R+ A   +  YG L+V          +F +   V
Sbjct: 121 FKLLENRSH---IISETLMMQHEVALRLAANPGTKEYGILAVQLQTFCDVRYLFKVGKKV 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P+V S V+  +P   P+  C    ++  + AF +RRKTL+ +LK+    + L  + 
Sbjct: 178 FRPRPEVDSAVVRIVPKKTPLDDCETEFRRFVRLAFQQRRKTLQNNLKQHYDISQLSASE 237

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           +    RAE+ +I +F  + + + 
Sbjct: 238 L--QRRAESFTITEFEMLFSRIR 258


>gi|320159790|ref|YP_004173014.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1]
 gi|319993643|dbj|BAJ62414.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1]
          Length = 305

 Score =  261 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 147/287 (51%), Gaps = 16/287 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           +N     +  +L  + + P+K +GQNFL D  IL++I ES+       V+EIG G G+LT
Sbjct: 23  LNLPPLPVAALLRSHGLAPRKSLGQNFLTDPAILRRIVESAELPPQAEVLEIGPGLGSLT 82

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           ++L  + AR+V+ +E D    P+L ++ S + N +E++  D L+ D  +  + +    ++
Sbjct: 83  RVLAQV-ARRVVAVELDSTLIPLLDEVVSPYGN-VEVLHGDILQFDPARLMSSAG-YFVV 139

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           AN+PY I + ++ + + A   P   + + L  Q+EV ERI A         LSV      
Sbjct: 140 ANIPYYITSAVMRHLLEASIRP---QRVVLTIQREVAERICAVPGEMSLLALSV--QVYG 194

Query: 183 KATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
              +   I    F+P PKV S V+     P        LE   ++ +  F ++RKTLR +
Sbjct: 195 APRVTLRIPAGAFYPPPKVDSAVVRVDLSPQPRIPAEQLEIFFRLIRAGFSQKRKTLRNA 254

Query: 241 L------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           L      K    E+LL QAGI+ N RAE+L++E++  + +     ++
Sbjct: 255 LSSGLGWKGERAESLLRQAGIDPNRRAESLALEEWALLVDAYVKAEE 301


>gi|150004476|ref|YP_001299220.1| dimethyladenosine transferase [Bacteroides vulgatus ATCC 8482]
 gi|166221645|sp|A6L1N4|RSMA_BACV8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|149932900|gb|ABR39598.1| dimethyladenosine transferase [Bacteroides vulgatus ATCC 8482]
          Length = 280

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 94/269 (34%), Positives = 137/269 (50%), Gaps = 12/269 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL+I K IA++      + ++E+G G G LTQ ++    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQKN-RPVKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++ EK F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLRENFPALEDN--IIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LS+L     K   +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K+  +  F +RRKTLR S+  +  +     A    
Sbjct: 177 PKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLSADPIF 236

Query: 258 NLRAENLSIEDFCRITN----ILTDNQDI 282
           N R E LS+++F  +TN     L +  DI
Sbjct: 237 NKRPEQLSVQEFIELTNQVEAALKNKTDI 265


>gi|292492136|ref|YP_003527575.1| dimethyladenosine transferase [Nitrosococcus halophilus Nc4]
 gi|291580731|gb|ADE15188.1| dimethyladenosine transferase [Nitrosococcus halophilus Nc4]
          Length = 265

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 124/264 (46%), Gaps = 8/264 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             +K  GQ+FL D  ++ ++        G  ++EIG G G LT  LL      +  IE D
Sbjct: 7   QARKRFGQHFLHDKQVIDRLHRVINPQPGELMVEIGPGQGALTLPLLRRLGH-LEAIELD 65

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWI 138
           +     L +  +     L +   DAL  DF       +  +R++ NLPYN+ T LLF+ +
Sbjct: 66  RDLAAYLVENCAS-EGDLHLHNVDALTFDFRTLAREQNQRLRVVGNLPYNVSTPLLFHLL 124

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +        E +  + Q+EV  R+ A+     YGRLSV+  +      +F + P  F P 
Sbjct: 125 AQVE---VLEDMHFMLQREVVVRLAAKPGGKDYGRLSVMVQFYCGVEPLFTVKPGAFMPP 181

Query: 199 PKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   PH   +   +   +L ++  +AF +RRKTL  +LK L G   L   GI+
Sbjct: 182 PKVDSMVVRLKPHRPSLAPEIPHAALNRVVSQAFSQRRKTLANALKGLLGSADLKVLGID 241

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
              R E + +E +  +T     ++
Sbjct: 242 PRQRPETVDLEQYLALTRYWLAHR 265


>gi|326560243|gb|EGE10631.1| dimethyladenosine transferase [Moraxella catarrhalis 7169]
 gi|326566439|gb|EGE16589.1| dimethyladenosine transferase [Moraxella catarrhalis BC1]
 gi|326570983|gb|EGE21007.1| dimethyladenosine transferase [Moraxella catarrhalis BC7]
          Length = 284

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 14/273 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K  P+K  GQNFL D +I+ ++  +        ++EIG G G LT+ LL      + VIE
Sbjct: 12  KHAPRKRFGQNFLHDTHIISQVVTAIRLDRQDNLLEIGPGLGALTEPLLAE-VDGMTVIE 70

Query: 78  KDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLL 134
            D+     LK +I +   +   II D+A+ V++            R++ NLPYNI T +L
Sbjct: 71  LDRDLASQLKINIGANSHSDFTIINDNAMHVNYRALAEQIGKGVFRVVGNLPYNISTPIL 130

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +    +    + +  + QKEV +RITA+ NS  YGRLSV+  +  ++  +  +    
Sbjct: 131 FRLLE---FSDVIKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGA 187

Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLG-----GE 247
           F P PKVTS V    P+   PI    ES+   + +E+F  RRKTLR   K  G      E
Sbjct: 188 FNPPPKVTSAVFRLTPYKTKPITAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDE 247

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +   + GI  + R E L + +F  + +++  N+
Sbjct: 248 SDFEKIGINPSARPETLCVHEFVLLADLVVKNR 280


>gi|268318776|ref|YP_003292432.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785]
 gi|262397151|emb|CAX66165.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785]
          Length = 296

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 99/296 (33%), Positives = 154/296 (52%), Gaps = 21/296 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +   + + I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG G G+
Sbjct: 5   MPIASPVRT-QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQRGDQVIEIGPGIGS 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKV----DFE 110
           LT+ LL  GA KV+  E DQ    IL +         +  +R +++  D LK     D +
Sbjct: 64  LTEQLLLAGA-KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDND 122

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
            F ++S  ++I+ANLPY I T ++FN I +D     + SLTL+ QKEV ER+ A+  +  
Sbjct: 123 GFLDLSKSVKIVANLPYYITTPIIFNLIKSDL---DFSSLTLMMQKEVAERLVAKPKTKE 179

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEA 229
           YG LS+    R    +  ++    F P PKV S V+   P L             + +  
Sbjct: 180 YGPLSIAVQSRMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYAFFDHVVKMC 239

Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           F +RRKTL  +LK L       E L++  G++  +R E L++  F ++ ++L D Q
Sbjct: 240 FAQRRKTLANNLKTLIKDKDEREKLINDLGLDARVRPEELTLNQFVQLAHLLKDRQ 295


>gi|212693622|ref|ZP_03301750.1| hypothetical protein BACDOR_03140 [Bacteroides dorei DSM 17855]
 gi|237708782|ref|ZP_04539263.1| dimethyladenosine transferase [Bacteroides sp. 9_1_42FAA]
 gi|237724220|ref|ZP_04554701.1| dimethyladenosine transferase [Bacteroides sp. D4]
 gi|265755952|ref|ZP_06090419.1| dimethyladenosine transferase [Bacteroides sp. 3_1_33FAA]
 gi|212663875|gb|EEB24449.1| hypothetical protein BACDOR_03140 [Bacteroides dorei DSM 17855]
 gi|229437408|gb|EEO47485.1| dimethyladenosine transferase [Bacteroides dorei 5_1_36/D4]
 gi|229457208|gb|EEO62929.1| dimethyladenosine transferase [Bacteroides sp. 9_1_42FAA]
 gi|263234030|gb|EEZ19631.1| dimethyladenosine transferase [Bacteroides sp. 3_1_33FAA]
          Length = 280

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 94/269 (34%), Positives = 137/269 (50%), Gaps = 12/269 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL+I K IA++      + ++E+G G G LTQ ++    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQKN-RAVKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++ EK F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVTYLRENFPALEDN--IIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LS+L     K   +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K+  +  F +RRKTLR S+  +  +     A +  
Sbjct: 177 PKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLSADLIF 236

Query: 258 NLRAENLSIEDFCRITN----ILTDNQDI 282
           N R E LS+ +F  +TN     L +  DI
Sbjct: 237 NKRPEQLSVSEFIELTNRVEAALKNKTDI 265


>gi|190360597|ref|NP_001121947.1| dimethyladenosine transferase 1, mitochondrial [Sus scrofa]
 gi|186886356|gb|ACC93577.1| CGI-75 protein [Sus scrofa]
          Length = 340

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 142/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  +K+   K + QNFLLDL +  KI   +GSL    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  G  +++V+EKD +F P L+ +S   P +L I+  D L    E+ F         +  
Sbjct: 74  LNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   +            +TL FQKEV ER+ A K S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEVAERLIASKGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++  +      +  I    F P P+V   V+HF P   P I    + ++K+ Q AF
Sbjct: 194 SRLSIMAQYLCGVQHVLTIPGRAFVPKPEVDVGVVHFTPLTQPKIEQPFKLVEKVVQNAF 253

Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L  E         LL  A ++  LR   LS+  F  + ++     D
Sbjct: 254 QFRRKYCYRGLGMLFPEAQRMERTGKLLESADVDPTLRPTQLSVSHFQSLCDVYRKMCD 312


>gi|220927630|ref|YP_002504539.1| dimethyladenosine transferase [Clostridium cellulolyticum H10]
 gi|219997958|gb|ACL74559.1| dimethyladenosine transferase [Clostridium cellulolyticum H10]
          Length = 290

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 89/297 (29%), Positives = 152/297 (51%), Gaps = 26/297 (8%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M  NN S     I+  +++   K +GQNFL D +++K+I ++S        IEIG G G+
Sbjct: 1   MIKNNTS----EIIKKHRLKLTKALGQNFLTDFSVVKRIVDASDIDKDTLAIEIGPGVGS 56

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115
           +T+ L    A  V  IE D++  P L D  S + N + II +D +K D +   N      
Sbjct: 57  MTRELAARSAG-VAAIEIDKRLIPALNDNLSDYSN-VSIINEDIMKADIDTIINKYREVY 114

Query: 116 -SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
            +  ++++ANLPY I T ++  ++         + +  + Q+EV ER+ +   +  YG L
Sbjct: 115 NAKSVKVVANLPYYITTPIIMRFLEE---VKGVDKMVFMVQREVAERMVSGPGTKDYGAL 171

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK 232
           SV   + +K  ++FD+ PH F P P+V ST+I       P    ++     KI + +FG+
Sbjct: 172 SVAVQFYSKPEIIFDVPPHCFIPQPEVHSTIIGLDILSEPPVEVIDRNLYFKIVKASFGQ 231

Query: 233 RRKTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNI-LTDNQ 280
           RRKTL  +L   G         + +L + G   N+R E L++  F +++N+ + ++Q
Sbjct: 232 RRKTLVNALSNSGFFNKTKEQIKQILKEMGKSENIRGEVLTVAQFAQLSNLMINEHQ 288


>gi|237714484|ref|ZP_04544965.1| dimethyladenosine transferase [Bacteroides sp. D1]
 gi|262408316|ref|ZP_06084863.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22]
 gi|293373592|ref|ZP_06619940.1| dimethyladenosine transferase [Bacteroides ovatus SD CMC 3f]
 gi|294646638|ref|ZP_06724267.1| dimethyladenosine transferase [Bacteroides ovatus SD CC 2a]
 gi|294805896|ref|ZP_06764766.1| dimethyladenosine transferase [Bacteroides xylanisolvens SD CC 1b]
 gi|299148382|ref|ZP_07041444.1| dimethyladenosine transferase [Bacteroides sp. 3_1_23]
 gi|229445648|gb|EEO51439.1| dimethyladenosine transferase [Bacteroides sp. D1]
 gi|262353868|gb|EEZ02961.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22]
 gi|292631417|gb|EFF50047.1| dimethyladenosine transferase [Bacteroides ovatus SD CMC 3f]
 gi|292638021|gb|EFF56410.1| dimethyladenosine transferase [Bacteroides ovatus SD CC 2a]
 gi|294446925|gb|EFG15522.1| dimethyladenosine transferase [Bacteroides xylanisolvens SD CC 1b]
 gi|295086621|emb|CBK68144.1| dimethyladenosine transferase [Bacteroides xylanisolvens XB1A]
 gi|298513143|gb|EFI37030.1| dimethyladenosine transferase [Bacteroides sp. 3_1_23]
          Length = 266

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P 
Sbjct: 120 DNKDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++      I  
Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILF 236

Query: 258 NLRAENLSIEDFCRITNILTD 278
           N R E LS+ +F  +TN + +
Sbjct: 237 NKRPEQLSVAEFIDLTNKVEE 257


>gi|228473773|ref|ZP_04058518.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274794|gb|EEK13617.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC
           33624]
          Length = 258

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/265 (36%), Positives = 138/265 (52%), Gaps = 8/265 (3%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +    + PKK++GQ+FL +L+I ++IA +   +    V+EIG G G LTQ LL     +V
Sbjct: 1   MKKSPVQPKKHLGQHFLTNLSIAQQIANTLSEVGYDRVLEIGPGTGVLTQFLLGKNI-EV 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D +    L+   S+      I+ +D LK D    F+   P  II N PYNI +++
Sbjct: 60  FVIEIDTESVTYLEQHFSKLKG--HILGEDFLKFDIVSHFS-KKPFAIIGNFPYNISSQI 116

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F  +    + P +  +   FQKEV ERI  +  S  YG LSVLT        +F +S H
Sbjct: 117 VFKLLEIRDFVPEFSGM---FQKEVAERICEKAGSKTYGILSVLTQAFYDTEYLFTVSEH 173

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           VF P PKV S VI      N  +PC  +   +I + AFG+RRKTLR SLK    E    +
Sbjct: 174 VFNPPPKVKSGVIRLKRKENYSLPCEEKLFFQIVKTAFGQRRKTLRNSLKSFLIEKESLK 233

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
           +    + R E LS+E+F  +   L 
Sbjct: 234 SDPLFDKRPEMLSVEEFITLAQWLA 258


>gi|78067504|ref|YP_370273.1| dimethyladenosine transferase [Burkholderia sp. 383]
 gi|119365010|sp|Q39D37|RSMA_BURS3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|77968249|gb|ABB09629.1| dimethyladenosine transferase [Burkholderia sp. 383]
          Length = 275

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 13/270 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVSTIGPARGQRMVEIGPGLGALTEPLIERLATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     L+         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEVVTAAFSQRRKMLRNTLGDYRET 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 G +   RAE++S+ ++  +   L 
Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALA 269


>gi|328676628|gb|AEB27498.1| Dimethyladenosine transferase [Francisella cf. novicida Fx1]
          Length = 262

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       VIEIG G G LT+ LL   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVIEIGPGLGALTRYLL-SSSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134
           +E D      L     ++     I   D LK D     N S   I++I NLPYNI + +L
Sbjct: 61  VEFDANVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           F+P PKV S ++   P     +       ++I +++F +RRKTL  +LK +  E  +   
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|260893941|ref|YP_003240038.1| dimethyladenosine transferase [Ammonifex degensii KC4]
 gi|260866082|gb|ACX53188.1| dimethyladenosine transferase [Ammonifex degensii KC4]
          Length = 297

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/286 (34%), Positives = 144/286 (50%), Gaps = 17/286 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++K +L+ + I P+K  GQ+FL+   +L KI E++      TV+E+G G G LT  L
Sbjct: 10  SPAAVKAVLAEWGIKPRKRWGQHFLVRREVLAKIVEAAELSPADTVVEVGPGLGVLTARL 69

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS---PIRII 122
           L   A KV+ IE D +    L+    +HP RL +++ DAL+ DF+     +    P +++
Sbjct: 70  LE-KAGKVVAIELDPRLEAFLRARFGEHP-RLTLVRGDALECDFDLLVQEARGFFPYKVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + + LL       T P     L L+ QKEV  R+ A   +  YG LS+L  +RT
Sbjct: 128 ANLPYYLTSPLLL---RLLTSPWRISLLVLMLQKEVALRLLASPGTKEYGSLSLLVQYRT 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
             +++  +S H F+P P+V S V+       P            + + AF KRRKTL  +
Sbjct: 185 LPSLVTFVSRHSFYPPPEVDSAVVRLEVRTRPSVEVGDESVFFGVVRAAFAKRRKTLLNA 244

Query: 241 LKR----LGGENL---LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L      L  E     L  AGI+   R E LS+E+F RI   L  N
Sbjct: 245 LTSSSLGLSKEEWQRLLLDAGIDPGRRGETLSLEEFARIARRLQSN 290


>gi|315037470|ref|YP_004031038.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112]
 gi|312275603|gb|ADQ58243.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112]
          Length = 294

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 20/280 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + I++ Y +  KK +GQNFL+D   +  I ES+    G  VIEIG G G+LT+ LL  G
Sbjct: 13  TRAIINRYFVKAKKNLGQNFLVDQAAILGIVESAYIQPGDQVIEIGPGIGSLTEQLLLAG 72

Query: 70  ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119
           A KV   E D     IL +        +    R ++I  D LK +FE+    FF++S PI
Sbjct: 73  A-KVFAYEVDDSLPEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAGFFDMSKPI 131

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  +  YG L++   
Sbjct: 132 KVVANLPYYITTPIIFALAESDLH---FASLTLMMQKEVAERLEAKPGNKEYGPLTISVQ 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLR 238
                 +  ++    F P PKV S V+   P    P     +    + +  F +RRKTL 
Sbjct: 189 TEMNVKLALEVKSSSFMPRPKVDSAVVVLTPLAEKPAINDRKHFIWVVKMCFSQRRKTLN 248

Query: 239 QSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRIT 273
            +LK L  +N     L+ + G++  +R E+L+IE F +I 
Sbjct: 249 NNLKTLIPDNDQRAALIKELGVDPRVRPEDLTIEQFIKIA 288


>gi|213962508|ref|ZP_03390770.1| dimethyladenosine transferase [Capnocytophaga sputigena Capno]
 gi|213954834|gb|EEB66154.1| dimethyladenosine transferase [Capnocytophaga sputigena Capno]
          Length = 257

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/263 (37%), Positives = 139/263 (52%), Gaps = 10/263 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL DLNI +KIA++        VIEIGAG G LTQ LL      V ++E 
Sbjct: 4   VKAKKHLGQHFLKDLNIAQKIADTLSLKGYNKVIEIGAGMGVLTQFLLKKDVD-VHIVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L+    +   +  II DD LK +   +  I  P  II N PYNI T+++F  +
Sbjct: 63  DKESVAYLETHYPELKGK--IIADDFLKYNIADY--IGEPFAIIGNFPYNISTQIVFKLL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               + P +  +   FQKEV ERI   + S  YG LSVL      A+ +F +S  VF P 
Sbjct: 119 ELREYVPEFSGM---FQKEVAERICEHEGSKTYGILSVLVQAFYDASYLFTVSEGVFNPP 175

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI  +   N  + C       + + AF +RRKTLR SLK+   +  L Q  I  
Sbjct: 176 PKVKSGVIRLVRKTNFHLDCDESLFFTVVKTAFNQRRKTLRNSLKQFLIDENLKQDSI-F 234

Query: 258 NLRAENLSIEDFCRITNILTDNQ 280
           + R E L  +DF RIT ++++  
Sbjct: 235 DKRPEQLPWQDFVRITKVISEQH 257


>gi|118497159|ref|YP_898209.1| dimethyladenosine transferase [Francisella tularensis subsp.
           novicida U112]
 gi|194323457|ref|ZP_03057234.1| dimethyladenosine transferase [Francisella tularensis subsp.
           novicida FTE]
 gi|166221666|sp|A0Q5E0|RSMA_FRATN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118423065|gb|ABK89455.1| dimethyladenosine transferase [Francisella novicida U112]
 gi|194322312|gb|EDX19793.1| dimethyladenosine transferase [Francisella tularensis subsp.
           novicida FTE]
          Length = 262

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       VIEIG G G LT+ LL   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVIEIGPGLGALTRYLL-SSSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134
           +E D      L     ++     I   D LK D     N S   I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           F+P PKV S ++   P     +       ++I +++F +RRKTL  +LK +  E  +   
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|147676415|ref|YP_001210630.1| dimethyladenosine transferase [Pelotomaculum thermopropionicum SI]
 gi|189028813|sp|A5D673|RSMA_PELTS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146272512|dbj|BAF58261.1| dimethyladenosine transferase [Pelotomaculum thermopropionicum SI]
          Length = 295

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/296 (30%), Positives = 138/296 (46%), Gaps = 23/296 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M +      ++ I+  + I P+K +GQNFL+DLNI+ KI +++       V+EIG G G 
Sbjct: 1   MIVVASPAVVREIMRRHGISPRKSLGQNFLIDLNIIDKIIKAADLTPADLVVEIGPGLGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115
           L        A KV+ +E D+   P L ++       +EII+ DAL VDF++         
Sbjct: 61  L-TARAAARAGKVLAVEVDRGLLPALAEVLEG-AGNVEIIRGDALDVDFDRLAGEKTDGA 118

Query: 116 ----SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
                   +++ANLPY +   LL            +  + ++ Q EV  R+TA   +  Y
Sbjct: 119 FGRGGKKYKLLANLPYYLTGPLLL---RLLLERFNFALMVVMVQLEVAFRLTASPGTADY 175

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEA 229
           G LSV   + T+  ++F +   VF+P P V S V+       P       +   ++ + A
Sbjct: 176 GALSVAVQYFTEPKVLFRVPRTVFYPPPGVDSAVVRLALRPAPAVTVRNEDVFFQVVRAA 235

Query: 230 FGKRRKTLRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           FG RRKTL  SL   G          +L +AGI+   R E LS+ +F  I +   D
Sbjct: 236 FGFRRKTLLNSLAASGLGPGREAWLEVLKRAGIDPQRRGETLSLSEFASIADSFLD 291


>gi|58698105|ref|ZP_00373028.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535351|gb|EAL59427.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 288

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 109/264 (41%), Positives = 152/264 (57%), Gaps = 8/264 (3%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  + + PKK +GQNF+L   I KKI   +GSL+   VIEIG G G LT+ +L    + +
Sbjct: 17  MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 76

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           + IEKD+        + ++H  +  II+ DAL V  E+   I  P+++IANLPYNI   L
Sbjct: 77  LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVL 134

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
              W++      F+ +LTL+FQKEV +RITA+ NS  YG LSVL+         FDI P 
Sbjct: 135 FLKWLNN---IKFFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIEPK 191

Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLL 250
            FFP PK+ S+VI   P   P     LE+L ++T+  F +RRK LR SL+ +    E +L
Sbjct: 192 EFFPRPKIHSSVITVNPLPIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHTETVL 251

Query: 251 HQAGIETNLRAENLSIEDFCRITN 274
             A +  N R ENL+IE FC + N
Sbjct: 252 ENAKLSGNERPENLTIEQFCLLAN 275


>gi|116491525|ref|YP_811069.1| dimethyladenosine transferase [Oenococcus oeni PSU-1]
 gi|122276293|sp|Q04DR8|RSMA_OENOB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116092250|gb|ABJ57404.1| dimethyladenosine transferase [Oenococcus oeni PSU-1]
          Length = 292

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 156/280 (55%), Gaps = 16/280 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            +TIL+ Y +   K +GQNFL+DLN+L++I + +      TVIEIG G G+LT+ L    
Sbjct: 13  TRTILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-A 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V+  E D++  PIL +    + N +EI+  D LK DF   F  +  ++I+ANLPY I
Sbjct: 72  AKQVVAYEIDKKLIPILSETLRPYKN-VEIVNRDILKADFS-IFAKNQSLKIVANLPYYI 129

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +++      ++S+T++ QKEV  R+ A   S  YG LS+   +R    ++  
Sbjct: 130 TTPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILP 186

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           ++   F PSP V S ++   P  N       E+L KI + +F  RRK+L  +L    G+N
Sbjct: 187 VTRKSFMPSPNVDSAIVQLTPKENFQSFPHEEALFKIIKASFAHRRKSLVNNLLYYFGKN 246

Query: 249 L---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279
                     + + G + N+R E L++E++ ++ N L++N
Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286


>gi|296161013|ref|ZP_06843824.1| dimethyladenosine transferase [Burkholderia sp. Ch1-1]
 gi|295888712|gb|EFG68519.1| dimethyladenosine transferase [Burkholderia sp. Ch1-1]
          Length = 277

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 122/273 (44%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71
            H   I +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L+   A    
Sbjct: 10  RHQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     LK         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 70  PLHAVELDRDLIGRLKTKFGDL---LELHAGDALAFDFGSLAAPGDKASLRIVGNLPYNI 126

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+      +         + Q EV ER+ A+  +  + RLSV+  +R       D
Sbjct: 127 SSPLLFHL---TAFAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L ++   AF +RRK LR +L      
Sbjct: 184 VPPEAFNPPPKVDSAIVRMIPYELHELPAVDERVLGELVTAAFSQRRKMLRNTLAAYRDS 243

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                 G +   RAE++ + ++ R+  I+  N+
Sbjct: 244 VDFEGLGFDLQRRAEDVPVSEYVRVAQIVAANK 276


>gi|160891201|ref|ZP_02072204.1| hypothetical protein BACUNI_03648 [Bacteroides uniformis ATCC 8492]
 gi|317481090|ref|ZP_07940169.1| dimethyladenosine transferase [Bacteroides sp. 4_1_36]
 gi|156859422|gb|EDO52853.1| hypothetical protein BACUNI_03648 [Bacteroides uniformis ATCC 8492]
 gi|316902803|gb|EFV24678.1| dimethyladenosine transferase [Bacteroides sp. 4_1_36]
          Length = 264

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 91/260 (35%), Positives = 140/260 (53%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++      I ++E+G G G LTQ LL    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDVCPEIPILEVGPGMGVLTQFLLP-KERNVKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q  +   II+DD LK++ ++ F    P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFG-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +  HVF P 
Sbjct: 120 EYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI  + +  + + C  +  K++ +  F +RRKTLR S+K + G++      +  
Sbjct: 177 PKVKSAVICMMRNETHDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+++F ++TN + 
Sbjct: 237 NKRPEQLSVQEFIQLTNQVE 256


>gi|329957566|ref|ZP_08298041.1| dimethyladenosine transferase [Bacteroides clarus YIT 12056]
 gi|328522443|gb|EGF49552.1| dimethyladenosine transferase [Bacteroides clarus YIT 12056]
          Length = 268

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/259 (34%), Positives = 139/259 (53%), Gaps = 8/259 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ LL    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDACPKLPILEVGPGMGVLTQFLLP-KERTVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q  +   II+DD LK++ ++ F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     +   +F +S HVF P 
Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G+       +  
Sbjct: 177 PKVKSAVIRMTRNDTRQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDLLF 236

Query: 258 NLRAENLSIEDFCRITNIL 276
           N R E LS+++F  +TN +
Sbjct: 237 NKRPEQLSVQEFIELTNRV 255


>gi|254372526|ref|ZP_04988015.1| dimethyladenosine transferase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570253|gb|EDN35907.1| dimethyladenosine transferase [Francisella novicida GA99-3549]
          Length = 262

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLL-SSSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134
           +E D      L     ++     I   D LK D     N S   I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           F+P PKV S ++   P     +       ++I +++F +RRKTL  +LK +  E  +   
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKGILKERKIDPS 236

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|89256872|ref|YP_514234.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315251|ref|YP_763974.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134302453|ref|YP_001122423.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156503047|ref|YP_001429112.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009234|ref|ZP_02274165.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187932059|ref|YP_001892044.1| dimethyladenosine transferase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254368148|ref|ZP_04984168.1| dimethyladenosine transferase, kasugamycin resistance [Francisella
           tularensis subsp. holarctica 257]
 gi|254369747|ref|ZP_04985757.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953903|ref|ZP_06558524.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312728|ref|ZP_06803470.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|119365026|sp|Q2A218|RSMA_FRATH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122324752|sp|Q0BKP7|RSMA_FRATO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221665|sp|A7NDV3|RSMA_FRATF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221667|sp|A4IZF1|RSMA_FRATW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732583|sp|B2SDQ1|RSMA_FRATM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|89144703|emb|CAJ80034.1| dimethyladenosine transferase , kasugamycin resistance [Francisella
           tularensis subsp. holarctica LVS]
 gi|115130150|gb|ABI83337.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134050230|gb|ABO47301.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134253958|gb|EBA53052.1| dimethyladenosine transferase, kasugamycin resistance [Francisella
           tularensis subsp. holarctica 257]
 gi|156253650|gb|ABU62156.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122706|gb|EDO66835.1| dimethyladenosine transferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712968|gb|ACD31265.1| dimethyladenosine transferase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 262

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLL-SSSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134
           +E D      L     ++     I   D LK D     N S   I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           F+P PKV S ++   P     +       ++I +++F +RRKTL  +LK +  E  +   
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|254247259|ref|ZP_04940580.1| Dimethyladenosine transferase [Burkholderia cenocepacia PC184]
 gi|124872035|gb|EAY63751.1| Dimethyladenosine transferase [Burkholderia cenocepacia PC184]
          Length = 275

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 120/270 (44%), Gaps = 13/270 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT  L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTGPLIERLATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     L+         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L +I   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPALLGEIVTAAFSQRRKMLRNTLGDYRET 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 G +   RAE++S+ ++  +   L 
Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALA 269


>gi|257455041|ref|ZP_05620285.1| dimethyladenosine transferase [Enhydrobacter aerosaccus SK60]
 gi|257447554|gb|EEV22553.1| dimethyladenosine transferase [Enhydrobacter aerosaccus SK60]
          Length = 289

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/279 (32%), Positives = 137/279 (49%), Gaps = 22/279 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P+K  GQNFL D  I+ +I +S  +     ++EIG G G +T+ LL     ++ V+E 
Sbjct: 9   HQPRKRFGQNFLHDQVIIGRIIDSIHAGRDDLMVEIGPGMGAITEPLLKE-VNRLTVVEL 67

Query: 79  DQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNI----------SSPIRIIANLPY 127
           D      L+     + N  L I++ +A++VD+   F               +RI+ NLPY
Sbjct: 68  DTDLADSLRIRIGANSNDGLTIVKANAMEVDYRALFQQIIGDYPNDTTDKKMRIVGNLPY 127

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI T LLF+ +S   +    E +  + QKEV +RITA  +S  YGRLS++  +  +   +
Sbjct: 128 NISTPLLFHLLS---FADVIEDMHFMLQKEVVDRITAAVDSREYGRLSIMMQYYCETDYL 184

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLG 245
             +    F P PKVTS V    P+   PI    E L   + +EAF  RRKTLR   K+  
Sbjct: 185 LTVPNGAFNPPPKVTSAVFRLRPYQQKPIVADDEKLFALVVREAFNHRRKTLRAIFKKSP 244

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                 E+ L   G+    R E LS++DF  + N +  N
Sbjct: 245 ILPAVTEHQLVAWGLNPLARPETLSVQDFVTLANGIAAN 283


>gi|225630006|ref|YP_002726797.1| dimethyladenosine transferase [Wolbachia sp. wRi]
 gi|254808269|sp|C0R5G4|RSMA_WOLWR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225591987|gb|ACN95006.1| dimethyladenosine transferase [Wolbachia sp. wRi]
          Length = 272

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/264 (41%), Positives = 152/264 (57%), Gaps = 8/264 (3%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  + + PKK +GQNF+L   I KKI   +GSL+   VIEIG G G LT+ +L    + +
Sbjct: 1   MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           + IEKD+        + ++H  +  II+ DAL V  E+   I  P+++IANLPYNI   L
Sbjct: 61  LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
              W++      F+ +LTL+FQKEV +RITA+ NS  YG LSVL+         FDI P 
Sbjct: 119 FLKWLNN---IKFFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIEPK 175

Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLL 250
            FFP PK+ S+VI   P   P     LE+L ++T+  F +RRK LR SL+ +    E +L
Sbjct: 176 EFFPRPKIHSSVITVNPLPIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHTETVL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITN 274
             A +  N R ENL+IE FC + N
Sbjct: 236 ENAKLSGNERPENLTIEQFCLLAN 259


>gi|225677138|ref|ZP_03788137.1| dimethyladenosine transferase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590805|gb|EEH12033.1| dimethyladenosine transferase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 270

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/264 (41%), Positives = 153/264 (57%), Gaps = 8/264 (3%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  + + PKK +GQNF+L   I KKI   +GSL+   VIEIG G G LT+ +L    + +
Sbjct: 1   MRKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           + IEKD+        + ++H  + +II+ DAL V  E+   I  P+++IANLPYNI   L
Sbjct: 61  LSIEKDRDLVKHHDQLLNEHQGKYKIIEADALHVIEEEL--IERPVKVIANLPYNISVVL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
              W++      F+ +LTL+FQKEV +RITA+ NS  YG LSVL+         FDI P 
Sbjct: 119 FLKWLNN---IKFFTNLTLMFQKEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIGPK 175

Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLL 250
            FFP PK+ S+VI   P   P     LE+L ++T+  F +RRK LR SL+ +    E +L
Sbjct: 176 EFFPRPKIHSSVITVNPLPIPKFAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHAETVL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITN 274
             A +  N R ENL+IE FC + N
Sbjct: 236 ENAKLSGNERPENLTIEQFCLLAN 259


>gi|238020848|ref|ZP_04601274.1| hypothetical protein GCWU000324_00743 [Kingella oralis ATCC 51147]
 gi|237867828|gb|EEP68834.1| hypothetical protein GCWU000324_00743 [Kingella oralis ATCC 51147]
          Length = 257

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 122/264 (46%), Gaps = 11/264 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +   +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V E
Sbjct: 3   QHQARKRFGQNFLQDTRIITDIVNAVRPQADDIVIEIGPGLAAITEPLA-RKLNQLHVCE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     LK       N+L I + D L  D   F +I+   +I+ NLPYNI T LLF  
Sbjct: 62  IDRDIINHLKK--QPFANKLVIHEGDVLNFD---FRSIAGRKKIVGNLPYNISTPLLFKL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                       +  + QKEV ER+ A   +  YGRLSV+  +      + D+ P  F P
Sbjct: 117 AEVAD---EVIDMHFMLQKEVVERMVAAPKTNDYGRLSVMLQYFFDMESLIDVPPESFIP 173

Query: 198 SPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +PKV S V+  IP    I           + + AF +RRKTLR +LK +  +  L   GI
Sbjct: 174 APKVDSAVVRMIPVAGRIGIARDFARFADLVRLAFHQRRKTLRNNLKGVASDEDLQAVGI 233

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
               RAE ++ E +  ++N L D 
Sbjct: 234 LPAQRAEEVAAEKYVALSNWLADK 257


>gi|290891124|ref|ZP_06554186.1| hypothetical protein AWRIB429_1576 [Oenococcus oeni AWRIB429]
 gi|290479088|gb|EFD87750.1| hypothetical protein AWRIB429_1576 [Oenococcus oeni AWRIB429]
          Length = 292

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 155/280 (55%), Gaps = 16/280 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL+ Y +   K +GQNFL+DLN+L++I + +      TVIEIG G G+LT+ L    
Sbjct: 13  TRAILNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAK-A 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A++V+  E D++  PIL +    + N ++I+  D LK DF   F  +  ++I+ANLPY I
Sbjct: 72  AKQVVAYEIDKKLIPILSETLRPYKN-VKIVNRDILKADFS-IFAKNQSLKIVANLPYYI 129

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +++      ++S+T++ QKEV  R+ A   S  YG LS+   +R    ++  
Sbjct: 130 TTPILFYLLNSSLN---FKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILP 186

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           ++   F PSP V S V+   P  N       E+L KI + +F  RRK+L  +L    G+N
Sbjct: 187 VTRKSFMPSPNVDSAVVQLTPKENFQSFPHEEALFKIIKASFAHRRKSLVNNLLYYFGKN 246

Query: 249 L---------LHQAGIETNLRAENLSIEDFCRITNILTDN 279
                     + + G + N+R E L++E++ ++ N L++N
Sbjct: 247 DENRTKIERSISETGFDLNIRGERLTLENYEQLVNNLSEN 286


>gi|223983387|ref|ZP_03633573.1| hypothetical protein HOLDEFILI_00853 [Holdemania filiformis DSM
           12042]
 gi|223964559|gb|EEF68885.1| hypothetical protein HOLDEFILI_00853 [Holdemania filiformis DSM
           12042]
          Length = 291

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/293 (29%), Positives = 147/293 (50%), Gaps = 18/293 (6%)

Query: 3   MNNKSHSLK---TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           MN    ++     IL+ Y +  KK  GQNF+++  I++KIA  S + +   VIEIG G G
Sbjct: 1   MNKPIATMARTNEILAKYDLYAKKNFGQNFIIEPGIVEKIARLSHADEHSAVIEIGPGIG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNI 115
            LT+ L  + A +V+  E D +   +L D  S +P+ +E++  D L+ D     EK    
Sbjct: 61  ALTEQLARV-AGQVLAFEIDDRLIEVLADTLSDYPH-VEVVHQDFLEADLNATVEKLKTQ 118

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
            + + + ANLPY I T +LF    +    P     T++ QKEV +R TA  ++  Y  LS
Sbjct: 119 WNQVLVCANLPYYITTPILFKIFESKADIPVI---TVMMQKEVADRFTAAVSTKDYNALS 175

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRR 234
           V+  ++ +   +  I   +F P P V S V+ F           E+    + +  F +RR
Sbjct: 176 VIVQYQYQVQTVMKIPKTIFNPRPAVDSAVVQFTRRQPVRTARDEAQFFALVKGCFKQRR 235

Query: 235 KTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           KTL  + +    +      LL++AG+E +LRAE ++++ F  +  +  + + +
Sbjct: 236 KTLYNNFREYLQDKDEATRLLNEAGLEPSLRAETMTLDQFLDLYEVTYETKSL 288


>gi|167561606|ref|ZP_02354522.1| dimethyladenosine transferase [Burkholderia oklahomensis EO147]
 gi|167568841|ref|ZP_02361715.1| dimethyladenosine transferase [Burkholderia oklahomensis C6786]
          Length = 275

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 13/269 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT   +   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPTIARLATPDS 65

Query: 73  -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     LK         LE+   DAL  DF           +RII NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLKQRFGDL---LELHAGDALAFDFGSLALPGDKPSLRIIGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +S   +         + Q EV ER+ A+  +  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLMS---FAHVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYTMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IPH      P     L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELQPVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 G +   RAE++ ++++ R+   +
Sbjct: 240 VDFDALGFDLARRAEDVDVDEYVRVAQAV 268


>gi|332291630|ref|YP_004430239.1| dimethyladenosine transferase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169716|gb|AEE18971.1| dimethyladenosine transferase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 288

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 139/284 (48%), Gaps = 15/284 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K H+ +       I  KK++GQ+FL D ++ K IA++   +    V+EIG G G LT+ L
Sbjct: 12  KPHAHRDT-HDQGIKAKKHLGQHFLGDESVAKDIADTLTYVGYSHVLEIGPGTGVLTKYL 70

Query: 66  LTLGARKVIVIEKDQQFFPILKDIS----SQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           L      + V++ D++    L+         +     +++ D L+ D +  +     + I
Sbjct: 71  LE-KPTHLSVMDLDRESIAYLQSAFTLEHKLNDEHFTVLEADFLRYDLDTIY-PGEQLAI 128

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             N PYNI T+++F  I      P +  +   FQKEV  RI A   S  YG +SVL    
Sbjct: 129 TGNFPYNISTQIVFKTIEHKERIPEFTGM---FQKEVAARICADHGSKTYGIMSVLVQAF 185

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQ 239
             A  +F + P VF P PKV S V+          I C  E L K+ + AF +RRKTLR 
Sbjct: 186 FDAEYLFTVPPTVFIPPPKVDSGVLRLKRKEGYQDIGCTQEMLFKVVKMAFQQRRKTLRN 245

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           SLK +G  +   +  I    R E +S+++F  +T  +T+  DIA
Sbjct: 246 SLKGMGLSDEFREREI-LTRRPEQISVQEFIALTAAITE--DIA 286


>gi|323524760|ref|YP_004226913.1| dimethyladenosine transferase [Burkholderia sp. CCGE1001]
 gi|323381762|gb|ADX53853.1| dimethyladenosine transferase [Burkholderia sp. CCGE1001]
          Length = 276

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 124/270 (45%), Gaps = 13/270 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71
            H   I +K  GQNFL+DL ++  I +      G  ++EIG G G LT+ L+   A    
Sbjct: 10  RHQGHIARKRFGQNFLVDLGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     LK+        LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 70  PLHAVELDRDLIGRLKNKFGDL---LELHAGDALAFDFGSLAAPGDAPSLRIVGNLPYNI 126

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+     T+         + Q EV ER+ A+  +  + RLSV+  +R       D
Sbjct: 127 SSPLLFHL---ATFAHCVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+      P     L ++   AF +RRK LR +L  L   
Sbjct: 184 VPPEAFQPPPKVDSAIVRMIPYAPHELAPVDERVLGEVVTAAFSQRRKMLRNTLAALRDT 243

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 G +   RAE++ + ++ R+  ++ 
Sbjct: 244 VDFDAIGFDLQRRAEDVPVAEYVRVAQLVA 273


>gi|161611309|ref|YP_007394.2| dimethyladenosine transferase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|62900537|sp|Q6ME80|RSMA_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 284

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 13/283 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   L+  L+   I PKK + QNFL+D NI++KI  +S    G  V+EIG GPG+LTQ +
Sbjct: 5   KPSELRLFLNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAM 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRI 121
           L + A  V+ +EKD      LK        +LEI  +D L    E+            ++
Sbjct: 65  LEVEAH-VVAVEKDFVLARELK-RFQTPSKQLEIFCEDILMFSVEEELQSRLRDDQKAKV 122

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           IANLPY++ T +L   +        + SLT++ Q+EV  R+TA      Y   ++   + 
Sbjct: 123 IANLPYHLTTPILAEMVVRRK---LFSSLTVMVQEEVARRMTALPGQSDYSSFTIFLNFY 179

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           +K    F +S + F+P+PKV S ++       P     +   KIT+ AF +RRK LR SL
Sbjct: 180 SKPRYGFTVSRNCFYPAPKVDSAIVVLELKEPPPNIDAQVFFKITRTAFEQRRKMLRASL 239

Query: 242 KRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           K L       N L   G     R E LS+EDF ++ + L  ++
Sbjct: 240 KSLFDPSKISNALEIIGQNPQARPEVLSLEDFIKLYHELYSSE 282


>gi|328675684|gb|AEB28359.1| Dimethyladenosine transferase [Francisella cf. novicida 3523]
          Length = 262

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 98/266 (36%), Positives = 137/266 (51%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDMVVEIGPGLGALTRYLLCT-SNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134
           IE D      L     ++     I   D LK D     N+S   I++I NLPYNI + +L
Sbjct: 61  IEFDASVIDTLIANCQKY-GTPRIYNQDFLKFDISSLENLSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFNCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           F+P PKV S ++   P  N  +       ++I +++F +RRKTL  +LK +  E  +   
Sbjct: 177 FYPQPKVDSAILRLKPKNNKALLKNYHFFEEIVKQSFAQRRKTLHNNLKYMLKERKIDPN 236

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|167764963|ref|ZP_02437084.1| hypothetical protein BACSTE_03355 [Bacteroides stercoris ATCC
           43183]
 gi|167697632|gb|EDS14211.1| hypothetical protein BACSTE_03355 [Bacteroides stercoris ATCC
           43183]
          Length = 265

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/260 (34%), Positives = 138/260 (53%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ LL    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDACPNLPILEVGPGMGVLTQFLLP-KERTVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q  +   II+DD LK++ ++ F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     +   +F +S HVF P 
Sbjct: 120 DNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G+          
Sbjct: 177 PKVKSAVIRMTRNDTQQLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDPLF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+++F  +TN + 
Sbjct: 237 NKRPEQLSVQEFIELTNQVE 256


>gi|159036383|ref|YP_001535636.1| dimethyladenosine transferase [Salinispora arenicola CNS-205]
 gi|157915218|gb|ABV96645.1| dimethyladenosine transferase [Salinispora arenicola CNS-205]
          Length = 289

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 133/279 (47%), Gaps = 15/279 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT       ++ + +   + P K +GQNF+ D N +++I  ++G      V+E+G G G+
Sbjct: 1   MTGLLGPAEIRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLASNDVVLEVGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNIS 116
           LT  LL + A  V  +E D      L + + +H      RL + + DAL+V   +  +  
Sbjct: 61  LTLALLPVAAH-VHAVEIDPVLAAALPETAVRHAGPAAARLSVHRADALRVTAGQLAD-P 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           +P  ++ANLPYN+   ++ + ++     P      ++ QKEV +R+ A   S  YG  SV
Sbjct: 119 APTALVANLPYNVAVPVVLHLLAE---LPTLRHGLVMVQKEVADRLVAGPGSRVYGVPSV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRK 235
              W  +      + P+VF+P P V S ++ F     P        +  +   AF +RRK
Sbjct: 176 KLAWYARVRAAGRVPPNVFWPVPNVDSGLVAFTRREPPGAGGSRSRVFAVVDAAFAQRRK 235

Query: 236 TLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDF 269
           TLR +L            +L  AG++   R E+L++E F
Sbjct: 236 TLRAALAGWAGGGDRAAAVLTAAGVDPGARGESLTVEQF 274


>gi|48976087|ref|NP_852139.2| dimethyladenosine transferase 1, mitochondrial [Rattus norvegicus]
 gi|47718050|gb|AAH70907.1| Transcription factor B1, mitochondrial [Rattus norvegicus]
 gi|149038492|gb|EDL92822.1| transcription factor B1, mitochondrial [Rattus norvegicus]
          Length = 345

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 142/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  + +   K + QNFLLDL +  KI   +GSL  + V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNADIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+         +      +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISLKNGPFVYGRTKMTLTFQKEVAERLVATTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++  +      +F I    F P P+V   V+H +P + P I    + ++K+ Q  F
Sbjct: 194 SRLSIMAQYLCNVEHLFTIPGKAFVPKPEVDVGVVHLMPLVQPKIKQPFKLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L  E         LL  A I+  LR  +LS+  F  + ++     D
Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCD 312


>gi|81871169|sp|Q811P6|TFB1M_RAT RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|28569596|gb|AAO42744.1| mitochondrial transcription factor b1 [Rattus norvegicus]
          Length = 345

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 142/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  + +   K + QNFLLDL +  KI   +GSL  + V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNADIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+         +      +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISLKNGPFVYGRTKMTLTFQKEVAERLVATTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++  +      +F I    F P P+V   V+H +P + P I    + ++K+ Q  F
Sbjct: 194 SRLSIMAQYLCNVEHLFTIPGKAFVPKPEVDVGVVHLMPLVQPKIKQPFKLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L  E         LL  A I+  LR  +LS+  F  + ++     D
Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCD 312


>gi|297616271|ref|YP_003701430.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144108|gb|ADI00865.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM
           12680]
          Length = 292

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 143/285 (50%), Gaps = 19/285 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L+ Y + PKK +GQ+FLLD N+L  IA++        V+EIGAG G LT  L    
Sbjct: 11  VRAVLAKYNLHPKKRLGQHFLLDHNVLTSIAKACELNQNDYVVEIGAGIGALTGYLAQE- 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------FNISSPIRIIA 123
           A+ V+ IE D      LK++ +   N ++ +  D LK++ E+           +  ++  
Sbjct: 70  AKGVLAIEVDPDLSEPLKEVLAGRDN-VKTLFGDILKLNIERETKQAFSLAPEASYKVCG 128

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I T ++F+ ++     P      L+ Q+EV ER+ A   +  YG L+V+  ++ +
Sbjct: 129 NLPYYITTPIIFHLLATA---PSMCWAVLMVQREVAERMLAPPGTKDYGMLTVMVRYQAE 185

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSL 241
             M+  +SP+ F P P+V S VI   P           +  K + +EAF +RRKT+   +
Sbjct: 186 VEMVRRVSPNCFRPRPEVDSAVIRVTPRRARPWAIRNEDVFKGLVKEAFQRRRKTIHNIV 245

Query: 242 KRLGGENLLHQA------GIETNLRAENLSIEDFCRITNILTDNQ 280
               G +    A      G+E   R E L I++F +I +  ++ +
Sbjct: 246 AEFFGVDKAEAAQKLGVLGVEPKRRPETLEIDEFGKIADAFSEQE 290


>gi|315607755|ref|ZP_07882748.1| dimethyladenosine transferase [Prevotella buccae ATCC 33574]
 gi|315250224|gb|EFU30220.1| dimethyladenosine transferase [Prevotella buccae ATCC 33574]
          Length = 317

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/264 (31%), Positives = 131/264 (49%), Gaps = 13/264 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DLNI ++IA++  +  G+ V+EIG G G LTQ L+T   R+V  +E 
Sbjct: 52  VKPKKNLGQHFLTDLNIARRIADTVDACPGLPVLEIGPGMGVLTQYLVT-KPREVKAVEI 110

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L +      +   II +D L++D    F    P  +  N PY+I +++ F  +
Sbjct: 111 DRESVAYLHETFPTLHDN--IIGEDFLRMDLNTVFG-GRPFVLTGNYPYDISSQIFFKML 167

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ ++  +  YG LSVL         +F +   VF P 
Sbjct: 168 DNRELIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYDVEYLFTVDEDVFNPP 224

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253
           PKV S VI    + +  + C     K++ +  F +RRK LR SLK+L            A
Sbjct: 225 PKVKSAVIRMTRNGVTDLGCDERLFKRLVKAVFNQRRKMLRVSLKQLFAGAQPSGEFFTA 284

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
            +    R E L+I  F  +TN++ 
Sbjct: 285 EV-MTRRPEQLTIAQFVELTNVVE 307


>gi|189425372|ref|YP_001952549.1| dimethyladenosine transferase [Geobacter lovleyi SZ]
 gi|189421631|gb|ACD96029.1| dimethyladenosine transferase [Geobacter lovleyi SZ]
          Length = 271

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 140/266 (52%), Gaps = 14/266 (5%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K +GQNFL D NI++KI  ++       V+E+G G G LT+ LL   AR ++ +E D
Sbjct: 7   RPRKALGQNFLSDHNIIRKILTTAHLQPTDRVLEVGPGRGALTE-LLAAQARHLVAVEFD 65

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    +L++  +  P ++ I + D L+VDFE+    S   +++ANLPYNI T +LF ++ 
Sbjct: 66  RDLAALLRERFAGQP-QVMIHEQDILQVDFEQLLG-SHTYKVVANLPYNISTPVLFRFLE 123

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  +  L ++ QKEVGER+ AQ +   YG L+VL     +    F + P  FFP P
Sbjct: 124 ERQ---RFSRLVVMLQKEVGERLAAQPDCSDYGILTVLFRQWFEVKREFLVPPGCFFPPP 180

Query: 200 KVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLH 251
           KV S VI   P              +++ + AFG RRKTL   LK  G       E LL 
Sbjct: 181 KVDSVVISLTPLVASRVEVGNQALFERLVKAAFGMRRKTLWNCLKSGGLAEPEQLEQLLL 240

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              I+   R E L+IE+F  ++  L+
Sbjct: 241 SCSIDGRRRGETLAIEEFALLSRTLS 266


>gi|38233472|ref|NP_939239.1| dimethyladenosine transferase [Corynebacterium diphtheriae NCTC
           13129]
 gi|62900542|sp|Q6NIA2|RSMA_CORDI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|38199732|emb|CAE49392.1| Putative dimethyladenosine transferase [Corynebacterium
           diphtheriae]
          Length = 295

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/282 (30%), Positives = 135/282 (47%), Gaps = 22/282 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     + P K +GQNF+ D N ++ I  ++       VIE+G G G+LT  LL  
Sbjct: 14  EIRQLAEKLDVTPTKKLGQNFVHDPNTVRMIVSAADLNSDDHVIEVGPGLGSLTLALLDT 73

Query: 69  GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            A+KV  +E D +    L     + + Q  +RL +I  DAL V  +   +I  P  ++AN
Sbjct: 74  -AQKVTAVEIDPRLAQQLPLTVAERAGQFADRLNLIHKDALTVAPD---DIDHPTALVAN 129

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +      P    + ++ Q EV +R+ A   +  YG  SV   +    
Sbjct: 130 LPYNVSVPVLLHLL---QIFPTIRRVLVMVQAEVADRLAADPGNKVYGVPSVKASFYGNV 186

Query: 185 TMMFDISPHVFFPSPKVTSTVIH---FIPHLNPIPCCLE---SLKKITQEAFGKRRKTLR 238
                I  +VF+P+PK+ S ++    F P   P P   +   ++  +   AF +RRKTLR
Sbjct: 187 RRAGSIGKNVFWPAPKIESGLVRIDVFDPEHQPWPVTDDMRKAVFPLIDSAFAQRRKTLR 246

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
            +L    G     E  L  AGI+  LR E L I DF R+  +
Sbjct: 247 AALSGHFGSGPAAEEALRTAGIDPILRGEKLDIADFVRLARV 288


>gi|330465668|ref|YP_004403411.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Verrucosispora maris AB-18-032]
 gi|328808639|gb|AEB42811.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Verrucosispora maris AB-18-032]
          Length = 290

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 130/277 (46%), Gaps = 15/277 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K +GQNF+ D N +++I  ++G       +E+G G G+LT  LL
Sbjct: 8   PAEIRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLTGDDVALEVGPGLGSLTLALL 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122
            + A  V  +E D      L D +++H      RL +   DAL++   +  +  +P  ++
Sbjct: 68  PVAAH-VHAVEIDPTLAAALPDTAARHAGPHAARLTVHHADALRITGAELTD-PAPTALV 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + ++     P      ++ QKEV +R+ A   S  YG  SV   W  
Sbjct: 126 ANLPYNVAVPVVLHLLA---VLPSLRHGLVMVQKEVADRLVAGPGSKVYGIPSVKLAWYA 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLR--- 238
            A     + P+VF+P P V S ++ F     P      E +  +   AF +RRKTLR   
Sbjct: 183 HARAAGKVPPNVFWPVPNVDSGLVAFTRREPPRADVPREQVFAVVDAAFAQRRKTLRAAL 242

Query: 239 --QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
              +         L  AG++   R E+L++E F  + 
Sbjct: 243 AGWAGGADRAAAALTAAGVDPGARGESLTVEQFAAVA 279


>gi|126439976|ref|YP_001057747.1| dimethyladenosine transferase [Burkholderia pseudomallei 668]
 gi|126452897|ref|YP_001064991.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106a]
 gi|167844380|ref|ZP_02469888.1| dimethyladenosine transferase [Burkholderia pseudomallei B7210]
 gi|242317237|ref|ZP_04816253.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106b]
 gi|254196635|ref|ZP_04903059.1| dimethyladenosine transferase [Burkholderia pseudomallei S13]
 gi|166221655|sp|A3NRM0|RSMA_BURP0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221656|sp|A3N5X6|RSMA_BURP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|126219469|gb|ABN82975.1| dimethyladenosine transferase [Burkholderia pseudomallei 668]
 gi|126226539|gb|ABN90079.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106a]
 gi|169653378|gb|EDS86071.1| dimethyladenosine transferase [Burkholderia pseudomallei S13]
 gi|242140476|gb|EES26878.1| dimethyladenosine transferase [Burkholderia pseudomallei 1106b]
          Length = 275

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  ++   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS 65

Query: 73  -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     L+    +    LE+   DAL  DF           +RII NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGGEPSLRIIGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IPH            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                 G +   RAE++ ++++ R+   +   +
Sbjct: 240 VDFDALGFDLARRAEDIGVDEYVRVAQAVASAR 272


>gi|206559290|ref|YP_002230051.1| dimethyladenosine transferase [Burkholderia cenocepacia J2315]
 gi|226729763|sp|B4EBE8|RSMA_BURCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|198035328|emb|CAR51203.1| dimethyladenosine transferase [Burkholderia cenocepacia J2315]
          Length = 275

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 13/270 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIERLATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     L+         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFADAVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L +I   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEIVSAAFSQRRKMLRNTLGDYRET 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 G +   RAE++S+ ++  +   L 
Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALA 269


>gi|212278071|gb|ACJ23050.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEI  G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEISPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE+++ E +  ++N L D 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257


>gi|295425701|ref|ZP_06818388.1| dimethyladenosine transferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295064717|gb|EFG55638.1| dimethyladenosine transferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 292

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/284 (33%), Positives = 146/284 (51%), Gaps = 20/284 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + I++ Y +  KK +GQNFL+D N +  I  ++   +G  VIEIG G G+LT+ LL  G
Sbjct: 13  TQAIINRYFVKAKKNLGQNFLVDQNAILGIVNAADIQEGDQVIEIGPGIGSLTEQLLLHG 72

Query: 70  ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119
           A KV   E D     IL++             R  ++  D L+ DF+K    FF+ S PI
Sbjct: 73  A-KVFAYEVDDSLPKILQNELPAKIGDQPLDQRFHLLLKDVLQADFKKDIGAFFDFSQPI 131

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  S  YG L++ T 
Sbjct: 132 KVVANLPYYITTPIIFALAESDL---RFASLTLMMQKEVAERLEAKTGSKAYGPLTIATQ 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLR 238
            R    +   +    F P PKV S+V+   P  +       +   K+ +  F +RRKTL 
Sbjct: 189 TRMHVELALQVDHTSFMPRPKVDSSVVVLTPIEHKPDVGRRAHFNKVVKMCFAQRRKTLN 248

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277
            +LK L  +      L+   G++  +R E+L+I  F +I N + 
Sbjct: 249 NNLKNLIPDADKRAELIASLGVDPKIRPEDLTIAQFIKIANAIA 292


>gi|86130919|ref|ZP_01049518.1| dimethyladenosine transferase [Dokdonia donghaensis MED134]
 gi|85818330|gb|EAQ39490.1| dimethyladenosine transferase [Dokdonia donghaensis MED134]
          Length = 288

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/269 (32%), Positives = 135/269 (50%), Gaps = 12/269 (4%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
             +  KK++GQ+FL D ++ + I ++        ++EIG G G LT+ +L   A ++ V+
Sbjct: 22  QGVKAKKHLGQHFLGDESVARDIGDTLTLEGYKHILEIGPGTGVLTKYILAKPA-QLTVM 80

Query: 77  EKDQQFFPILKDIS----SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           + D +    L+         +  +  +++ D LK D +  +    P+ I  N PYNI T+
Sbjct: 81  DLDTESIEYLRSSFTLEHKLNDEKFTVLEADFLKYDLDTIY-PGEPLAITGNFPYNISTQ 139

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++F  I      P +  +   FQKEV  RI A   S  YG LSVL      A  +F + P
Sbjct: 140 IVFKTIEHKERIPEFTGM---FQKEVAARICADHGSKTYGILSVLAQAFYDAEYLFTVPP 196

Query: 193 HVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
            VF P PKV S V+      N   I C  E L K+ + AF +RRKTLR SLK +G  +  
Sbjct: 197 TVFIPPPKVDSGVLRLKRKENFKDIGCTEEMLFKVVKMAFQQRRKTLRNSLKGMGLSDCF 256

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
            ++ I  N R E +S++ F  +T  +T +
Sbjct: 257 RESEI-LNKRPEQISVQGFIELTAAITKD 284


>gi|325518852|gb|EGC98422.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Burkholderia sp. TJI49]
          Length = 275

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 13/270 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVSTIGPARGQRMVEIGPGLGALTEPLIERLATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     L          LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIARLTQRFGAL---LELHAGDALAFDFRSLAAPGDAPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFADVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDKMLD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYAPHELPDVDPVLLGELVTAAFSQRRKMLRNTLGDYRDA 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 G +   RAE++S+ ++  +T  L 
Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVTQALA 269


>gi|208778952|ref|ZP_03246298.1| dimethyladenosine transferase [Francisella novicida FTG]
 gi|208744752|gb|EDZ91050.1| dimethyladenosine transferase [Francisella novicida FTG]
          Length = 262

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 97/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       VIEIG G G LT+ LL   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKRHDIVIEIGPGLGALTRYLL-SSSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134
           +E D      L     ++     I   D LK D     N S   I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           F+P PKV S ++   P     +       ++I +++F +RRKTL  +LK +  E  +   
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|227894433|ref|ZP_04012238.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047]
 gi|227863803|gb|EEJ71224.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047]
          Length = 294

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 144/286 (50%), Gaps = 20/286 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + I++ Y +  KK +GQNFL+D N +  I E++    G  VIEIG G G+LT+ LL  G
Sbjct: 13  TRAIINRYFVKAKKNLGQNFLVDQNAILGIVEAANIQSGDQVIEIGPGIGSLTEQLLLAG 72

Query: 70  ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119
           A KV   E D     IL +             R ++   D LK +FEK    FF++  PI
Sbjct: 73  A-KVFAYEVDDSLPEILHNELPKKIDGEPLEARFKLTLKDVLKANFEKDLTGFFDMGKPI 131

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  +  YG L++   
Sbjct: 132 KVVANLPYYITTPIIFVLAESDLH---FTSLTLMMQKEVAERLEAKPGNKEYGPLTISVQ 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLR 238
                 +  ++    F P P+V S+V+   P    P     +    + +  F +RRKTL 
Sbjct: 189 TEMNVRLALEVKNTSFMPRPRVDSSVVVLTPLKDKPAIENRKHFIWVVKMCFSQRRKTLN 248

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            +LK L  +     +L+ +  ++  +R E+LSIE F  I   +  N
Sbjct: 249 NNLKTLIPDTDQRADLIKKLDVDPRIRPEDLSIEQFIEIARNIPSN 294


>gi|300858098|ref|YP_003783081.1| dimethyladenosine transferase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685552|gb|ADK28474.1| dimethyladenosine transferase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302205822|gb|ADL10164.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis
           C231]
 gi|302330381|gb|ADL20575.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276057|gb|ADO25956.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis
           I19]
          Length = 290

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 133/283 (46%), Gaps = 22/283 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF+ D N ++ I  ++       V+EIG G G+LT  LL
Sbjct: 12  PAEIRHLAEKLDVTPTKKLGQNFVHDPNTVRMIVSAADLTADDHVVEIGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              AR V  +E D +    L     + +    +RL ++  DAL+V  E+      P  ++
Sbjct: 72  DT-ARSVTAVEIDPRLAEQLPMTVAERAPMFSDRLTLVHKDALQVTAEEI---GQPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L +++      P  + + ++ Q EV +R+ AQ  +  YG  SV   +  
Sbjct: 128 ANLPYNVSVPVLLHFL---QIFPSIQRVLVMVQAEVADRLAAQPGTKVYGVPSVKASFYG 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIH---FIPHLNPIPCCLE---SLKKITQEAFGKRRKT 236
                  I  +VF+P+PK+ S ++    F     P     E    +  +   AF +RRKT
Sbjct: 185 SVRRAGSIGKNVFWPAPKIESGLVRIDVFTQDNQPWEVGDELRSQVFPLIDAAFAQRRKT 244

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           LR +L    G     E+ L  AGI+  LR E L + DF R+  
Sbjct: 245 LRAALSGYYGSGAAAESALLGAGIDPTLRGEKLDVADFVRLAQ 287


>gi|218509347|ref|ZP_03507225.1| dimethyladenosine transferase [Rhizobium etli Brasil 5]
          Length = 215

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 114/216 (52%), Positives = 153/216 (70%), Gaps = 1/216 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  +K +GQNFLLDLN+ +K+A ++G L+G+TV E+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGA+KVI +E+D +  P L +I   +P RLE+I+ DALK DFE       P++
Sbjct: 61  LTRAILALGAKKVIAVERDARCLPALAEIGDHYPGRLEVIEGDALKTDFESLAPEG-PVK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL GW
Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATEDDDHYGRLGVLCGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           RT+A + FD+ P  F P PKVTSTV+H  P  NPIP
Sbjct: 180 RTEARLAFDVPPQAFTPPPKVTSTVVHLTPRENPIP 215


>gi|260171826|ref|ZP_05758238.1| dimethyladenosine transferase [Bacteroides sp. D2]
 gi|315920138|ref|ZP_07916378.1| dimethyladenosine transferase [Bacteroides sp. D2]
 gi|313694013|gb|EFS30848.1| dimethyladenosine transferase [Bacteroides sp. D2]
          Length = 266

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R + V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P 
Sbjct: 120 DNKDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++      I  
Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILF 236

Query: 258 NLRAENLSIEDFCRITNILTD 278
           N R E LS+ +F  +TN + +
Sbjct: 237 NKRPEQLSVAEFIDLTNKVEE 257


>gi|122095936|sp|Q1A705|TFB1M_HARVE RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|83032436|gb|ABB97064.1| mitochondrial transcription factor B-like protein [Hartmannella
           vermiformis]
          Length = 343

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 100/335 (29%), Positives = 161/335 (48%), Gaps = 54/335 (16%)

Query: 1   MTMNNKS-HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           MTM      ++  ++  + +  K+ + QNFLLDLNI  KI  SSG L   TVIE+G GPG
Sbjct: 1   MTMRLPPLPTIGELIRLFGLSAKQQLSQNFLLDLNITDKIVRSSGDLTNKTVIEVGPGPG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN------------------------ 95
            LT+ +L  GA+K++VIEKD++F P L+ +     N                        
Sbjct: 61  GLTRSILKAGAKKLVVIEKDRRFLPALEVLRHAAGNIDGSPWEEAFLTKSEMDAKRYMSY 120

Query: 96  -----RLEIIQDDALKVDFEKF---------------FNISSPIRIIANLPYNIGTRLLF 135
                R++I+ +D L+VD ++                +   +PI II NLP+ I T L  
Sbjct: 121 APNKSRMQIVMNDVLRVDEQEILQHIHAPIDSNDKTQWENMAPITIIGNLPFAISTELTI 180

Query: 136 NWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
            W+         +        L+FQKEV +R+ A   +  Y RL+V+T        + DI
Sbjct: 181 KWLKQIQGRHGAFRFGRAEFILMFQKEVADRLIANPGTKQYSRLTVMTQQLCSVKKLSDI 240

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
               F P P V ++++  +P + P+   +   +L+ + ++ FG+RRK +  S+K LG E 
Sbjct: 241 PGSAFVPKPDVDASLVSMVPRVTPLGVNVPTPTLEYVCRQVFGQRRKMINNSVKTLGPEA 300

Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             LL +A I+  LR E L++  +C +       ++
Sbjct: 301 EILLARAHIDPTLRPEQLTVPQWCDLARAYQQWEN 335


>gi|212278073|gb|ACJ23051.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEI  G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIDPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE+++ E +  ++N L D 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257


>gi|167814329|ref|ZP_02446009.1| dimethyladenosine transferase [Burkholderia pseudomallei 91]
          Length = 275

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  ++   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS 65

Query: 73  -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     L+    +    LE+   DAL  DF           +RII NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IPH            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPYELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                 G +   RAE++ ++++ R+   +   +
Sbjct: 240 VDFDALGFDLARRAEDIGVDEYVRVAQAVASAR 272


>gi|269302858|gb|ACZ32958.1| dimethyladenosine transferase [Chlamydophila pneumoniae LPCoLN]
          Length = 277

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 100/279 (35%), Positives = 144/279 (51%), Gaps = 14/279 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT ++ +  L  +LS  +  PKK + QNFL+D NI+KKI  +S  +    V+EIG G G 
Sbjct: 1   MTRSSPA-QLSRLLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L+  GA +VI IEKD  F P L+++    P RLEII      +D  + +      R
Sbjct: 60  LTEELIAAGA-QVIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYKTLGKGR 114

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY+I T LL         P FW+++T++ Q EV  RI AQ     YG L++   +
Sbjct: 115 VVANLPYHITTPLLTKLFLEA--PDFWKTVTVMVQDEVARRIVAQPGGKDYGSLTIFLQF 172

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLR 238
                  F +S   F+P P+V S VIH            E      +T+ AF +RRK L 
Sbjct: 173 FADIHYAFKVSASCFYPKPQVQSAVIHMKVKETLPLSDEEIPVFFTLTRTAFQQRRKVLA 232

Query: 239 QSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRIT 273
            +LK L      E  L + G+  N+R E LS+ D+  + 
Sbjct: 233 NTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDYLALF 271


>gi|115352811|ref|YP_774650.1| dimethyladenosine transferase [Burkholderia ambifaria AMMD]
 gi|122322257|sp|Q0BC07|RSMA_BURCM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115282799|gb|ABI88316.1| dimethyladenosine transferase [Burkholderia ambifaria AMMD]
          Length = 276

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 123/276 (44%), Gaps = 13/276 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     L+         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLQQRFGPL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGELVTAAFSQRRKMLRNTLGDYRET 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                 G +   RAE++S+ ++  +   L   +  A
Sbjct: 240 IDFDGLGFDLARRAEDVSVAEYVGVAQALAARRKAA 275


>gi|319901130|ref|YP_004160858.1| dimethyladenosine transferase [Bacteroides helcogenes P 36-108]
 gi|319416161|gb|ADV43272.1| dimethyladenosine transferase [Bacteroides helcogenes P 36-108]
          Length = 271

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/260 (35%), Positives = 139/260 (53%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +  GI V+E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDACPGIPVLEVGPGMGVLTQFLV-RKERPVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q      II+DD LK++ ++ FN  +P  +  N PYNI +++ F  +
Sbjct: 63  DFESVAYLRETYPQLEE--HIIEDDFLKMNLQRLFN-GNPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LS+L     K   +F +  HVF P 
Sbjct: 120 ENKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++         
Sbjct: 177 PKVKSAVIRMTRNETQHLGCNEQLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+++F  +TN + 
Sbjct: 237 NKRPEQLSVQEFINLTNQVE 256


>gi|294778235|ref|ZP_06743661.1| dimethyladenosine transferase [Bacteroides vulgatus PC510]
 gi|294447863|gb|EFG16437.1| dimethyladenosine transferase [Bacteroides vulgatus PC510]
          Length = 280

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/269 (34%), Positives = 136/269 (50%), Gaps = 12/269 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL+I K IA++      + ++E+G G G LTQ ++    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLSIAKDIADTVNVCPDLPILEVGPGMGVLTQFIMQKN-RPVKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++ EK F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLRENFPALEDN--IIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LS+L     K   +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K+  +  F +RRKTLR S+  +  +          
Sbjct: 177 PKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLSTDPIF 236

Query: 258 NLRAENLSIEDFCRITN----ILTDNQDI 282
           N R E LS+++F  +TN     L +  DI
Sbjct: 237 NKRPEQLSVQEFIELTNQVEAALKNKTDI 265


>gi|289209141|ref|YP_003461207.1| dimethyladenosine transferase [Thioalkalivibrio sp. K90mix]
 gi|288944772|gb|ADC72471.1| dimethyladenosine transferase [Thioalkalivibrio sp. K90mix]
          Length = 263

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K  GQNFL D  +L +I  +        V+EIG G G LT  LL    R ++ +E D+ 
Sbjct: 9   RKRFGQNFLHDQAVLARIVGAIAPRPDDPVLEIGPGRGALTGALLERLNR-LVAVEIDRD 67

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWISA 140
               L+   +  P RLE+   DAL +D            R++ NLPYNI T LLF+ +  
Sbjct: 68  LVAGLRAAFA--PERLELHVGDALDLDLASLGPPPEGGWRVVGNLPYNISTPLLFHLLDQ 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +  L Q+EV ER+TA   S  YGRL+V+   R +A  +F + P  F P PK
Sbjct: 126 MEA---VRDMHFLLQREVVERMTAVPGSKTYGRLTVMLAARARAQSLFGVPPGAFHPPPK 182

Query: 201 VTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           V S V+   P   P+          K+  +AF  RRKTLR+ L  L     +  A ++  
Sbjct: 183 VHSAVVRITPLEAPLVDSALYPVFAKVVNQAFSSRRKTLRRGLSGLVDAARIEAAQLDPG 242

Query: 259 LRAENLSIEDFCRITNILT 277
            R E + +  F  +  ++ 
Sbjct: 243 ARPETVDVHGFAALARMVA 261


>gi|298480326|ref|ZP_06998524.1| dimethyladenosine transferase [Bacteroides sp. D22]
 gi|298273607|gb|EFI15170.1| dimethyladenosine transferase [Bacteroides sp. D22]
          Length = 266

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R + V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P 
Sbjct: 120 DNKDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++      I  
Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTENILF 236

Query: 258 NLRAENLSIEDFCRITNILTD 278
           N R E LS+ +F  +TN + +
Sbjct: 237 NKRPEQLSVAEFIDLTNKVEE 257


>gi|189468116|ref|ZP_03016901.1| hypothetical protein BACINT_04510 [Bacteroides intestinalis DSM
           17393]
 gi|189436380|gb|EDV05365.1| hypothetical protein BACINT_04510 [Bacteroides intestinalis DSM
           17393]
          Length = 271

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/260 (34%), Positives = 137/260 (52%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++     G+ V+E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDVCPGLPVLEVGPGMGVLTQFLVK-KERPVKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++ ++ FN   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREEYPSLEDN--IIEDDFLKMNLQRLFN-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LS+L     +   +F +  HVF P 
Sbjct: 120 DNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYRVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++      +  
Sbjct: 177 PKVKSAVIRMTRNETQDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS++ F  +TN + 
Sbjct: 237 NKRPEQLSVQQFTDLTNRVE 256


>gi|160886818|ref|ZP_02067821.1| hypothetical protein BACOVA_04832 [Bacteroides ovatus ATCC 8483]
 gi|156107229|gb|EDO08974.1| hypothetical protein BACOVA_04832 [Bacteroides ovatus ATCC 8483]
          Length = 266

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 139/261 (53%), Gaps = 8/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R + V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLIKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++  + F+  +P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GTPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P 
Sbjct: 120 DNKDIVP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++      I  
Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTENILF 236

Query: 258 NLRAENLSIEDFCRITNILTD 278
           N R E LS+ +F  +TN + +
Sbjct: 237 NKRPEQLSVAEFIDLTNKVEE 257


>gi|53718304|ref|YP_107290.1| dimethyladenosine transferase [Burkholderia pseudomallei K96243]
 gi|53725018|ref|YP_102046.1| dimethyladenosine transferase [Burkholderia mallei ATCC 23344]
 gi|67641454|ref|ZP_00440232.1| dimethyladenosine transferase [Burkholderia mallei GB8 horse 4]
 gi|76809493|ref|YP_332287.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710b]
 gi|121600269|ref|YP_994030.1| dimethyladenosine transferase [Burkholderia mallei SAVP1]
 gi|124384045|ref|YP_001028306.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10229]
 gi|126450922|ref|YP_001081950.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10247]
 gi|134279776|ref|ZP_01766488.1| dimethyladenosine transferase [Burkholderia pseudomallei 305]
 gi|167002705|ref|ZP_02268495.1| dimethyladenosine transferase [Burkholderia mallei PRL-20]
 gi|167718167|ref|ZP_02401403.1| dimethyladenosine transferase [Burkholderia pseudomallei DM98]
 gi|167737198|ref|ZP_02409972.1| dimethyladenosine transferase [Burkholderia pseudomallei 14]
 gi|167909608|ref|ZP_02496699.1| dimethyladenosine transferase [Burkholderia pseudomallei 112]
 gi|167917623|ref|ZP_02504714.1| dimethyladenosine transferase [Burkholderia pseudomallei BCC215]
 gi|217420008|ref|ZP_03451514.1| dimethyladenosine transferase [Burkholderia pseudomallei 576]
 gi|237810897|ref|YP_002895348.1| dimethyladenosine transferase [Burkholderia pseudomallei MSHR346]
 gi|254176730|ref|ZP_04883387.1| dimethyladenosine transferase [Burkholderia mallei ATCC 10399]
 gi|254203732|ref|ZP_04910092.1| dimethyladenosine transferase [Burkholderia mallei FMH]
 gi|254208707|ref|ZP_04915055.1| dimethyladenosine transferase [Burkholderia mallei JHU]
 gi|254260055|ref|ZP_04951109.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710a]
 gi|254360240|ref|ZP_04976510.1| dimethyladenosine transferase [Burkholderia mallei 2002721280]
 gi|62900499|sp|Q62MM2|RSMA_BURMA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62900502|sp|Q63X76|RSMA_BURPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122064287|sp|Q3JVW6|RSMA_BURP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221652|sp|A3MNW4|RSMA_BURM7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221653|sp|A2S8N7|RSMA_BURM9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221654|sp|A1V727|RSMA_BURMS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|52208718|emb|CAH34654.1| dimethyladenosine transferase [Burkholderia pseudomallei K96243]
 gi|52428441|gb|AAU49034.1| dimethyladenosine transferase [Burkholderia mallei ATCC 23344]
 gi|76578946|gb|ABA48421.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710b]
 gi|121229079|gb|ABM51597.1| dimethyladenosine transferase [Burkholderia mallei SAVP1]
 gi|124292065|gb|ABN01334.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10229]
 gi|126243792|gb|ABO06885.1| dimethyladenosine transferase [Burkholderia mallei NCTC 10247]
 gi|134248976|gb|EBA49058.1| dimethyladenosine transferase [Burkholderia pseudomallei 305]
 gi|147745244|gb|EDK52324.1| dimethyladenosine transferase [Burkholderia mallei FMH]
 gi|147750583|gb|EDK57652.1| dimethyladenosine transferase [Burkholderia mallei JHU]
 gi|148029480|gb|EDK87385.1| dimethyladenosine transferase [Burkholderia mallei 2002721280]
 gi|160697771|gb|EDP87741.1| dimethyladenosine transferase [Burkholderia mallei ATCC 10399]
 gi|217397312|gb|EEC37328.1| dimethyladenosine transferase [Burkholderia pseudomallei 576]
 gi|237505952|gb|ACQ98270.1| dimethyladenosine transferase [Burkholderia pseudomallei MSHR346]
 gi|238522393|gb|EEP85837.1| dimethyladenosine transferase [Burkholderia mallei GB8 horse 4]
 gi|243061644|gb|EES43830.1| dimethyladenosine transferase [Burkholderia mallei PRL-20]
 gi|254218744|gb|EET08128.1| dimethyladenosine transferase [Burkholderia pseudomallei 1710a]
          Length = 275

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  ++   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS 65

Query: 73  -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     L+    +    LE+   DAL  DF           +RII NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IPH            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                 G +   RAE++ ++++ R+   +   +
Sbjct: 240 VDFDALGFDLARRAEDIGVDEYVRVAQAVASAR 272


>gi|167822806|ref|ZP_02454277.1| dimethyladenosine transferase [Burkholderia pseudomallei 9]
 gi|167892894|ref|ZP_02480296.1| dimethyladenosine transferase [Burkholderia pseudomallei 7894]
 gi|226196710|ref|ZP_03792290.1| dimethyladenosine transferase [Burkholderia pseudomallei Pakistan
           9]
 gi|254187683|ref|ZP_04894195.1| dimethyladenosine transferase [Burkholderia pseudomallei Pasteur
           52237]
 gi|254296205|ref|ZP_04963662.1| dimethyladenosine transferase [Burkholderia pseudomallei 406e]
 gi|157805832|gb|EDO83002.1| dimethyladenosine transferase [Burkholderia pseudomallei 406e]
 gi|157935363|gb|EDO91033.1| dimethyladenosine transferase [Burkholderia pseudomallei Pasteur
           52237]
 gi|225931241|gb|EEH27248.1| dimethyladenosine transferase [Burkholderia pseudomallei Pakistan
           9]
          Length = 275

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  ++   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS 65

Query: 73  -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     L+    +    LE+   DAL  DF           +RII NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLMS---FAPIVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IPH            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                 G +   RAE++ ++++ R+   +   +
Sbjct: 240 VDFDALGFDLARRAEDIGVDEYVRVAQAVASAR 272


>gi|241668930|ref|ZP_04756508.1| dimethyladenosine transferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877462|ref|ZP_05250172.1| dimethyladenosine transferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843483|gb|EET21897.1| dimethyladenosine transferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 262

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 139/266 (52%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ +L   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDIVLEIGPGLGALTRYILK-CSDNVNV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134
           +E D      L     ++    ++  +D LK D +    +    ++++ NLPYNI + +L
Sbjct: 61  VEFDASVIDTLLQNCQKY-GEPKVFNEDFLKFDLDIVRADSQQKLKLVGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +Q NS  YGRLSV+  +    +M+ +I P V
Sbjct: 120 FKVIEQSDK---IIDAHFMLQKEVVERIISQPNSKTYGRLSVILQYHFDCSMILNIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           F+P PKV S ++   P ++ +        + I +++F +RRKTL  +LK +  E  ++  
Sbjct: 177 FYPQPKVDSAILRLKPKVDKLVVNDYVFFENIVKQSFAQRRKTLHNNLKGILKEFDINPS 236

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              ++T LRAENLS+EDF  + N   
Sbjct: 237 ALPVDTKLRAENLSVEDFVSLANFFK 262


>gi|189461759|ref|ZP_03010544.1| hypothetical protein BACCOP_02425 [Bacteroides coprocola DSM 17136]
 gi|189431519|gb|EDV00504.1| hypothetical protein BACCOP_02425 [Bacteroides coprocola DSM 17136]
          Length = 262

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 92/260 (35%), Positives = 136/260 (52%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + K IA++  +   + ++E+G G G LTQ L+  G R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLQVAKDIADTVDTCPDLPILEVGPGMGVLTQFLIPKG-RPVKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++  ++  +   II+ D LK+D    FN  +P  +  N PYNI +++ F  +
Sbjct: 63  DFESVAYLRENFAELGDN--IIEQDFLKMDLSALFN-GNPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   +  YG LSVL     K   +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAACPGNKTYGILSVLIQAWYKVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K+I +  F +RRKTLR S+  +  +     A    
Sbjct: 177 PKVKSAVIRMTRNETKELGCNEKLFKQIVKTTFNQRRKTLRNSISPILEKGNPLSADPIF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+EDF  +TN + 
Sbjct: 237 NKRPEQLSVEDFIELTNRVE 256


>gi|307728472|ref|YP_003905696.1| dimethyladenosine transferase [Burkholderia sp. CCGE1003]
 gi|307583007|gb|ADN56405.1| dimethyladenosine transferase [Burkholderia sp. CCGE1003]
          Length = 276

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 124/270 (45%), Gaps = 13/270 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71
            H   I +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L+   A    
Sbjct: 10  RHQGHIARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIERLATPEA 69

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     LK+        LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 70  PLHAVELDRDLIGRLKNRFGAL---LELHAGDALAFDFGSLAAPGDAPSLRIVGNLPYNI 126

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+     ++         + Q EV ER+ A+  +  + RLSV+  +R       D
Sbjct: 127 SSPLLFHL---TSFAHRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 183

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP       P     L ++   AF +RRK LR +L  L G 
Sbjct: 184 VPPEAFQPPPKVDSAIVRMIPFAPHELAPVDERVLGEVVTAAFSQRRKMLRNTLAGLRGT 243

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 G +   RAE++ + ++ R+  ++ 
Sbjct: 244 VDFDAIGFDLQRRAEDVPVAEYVRVAQLVA 273


>gi|269125239|ref|YP_003298609.1| dimethyladenosine transferase [Thermomonospora curvata DSM 43183]
 gi|268310197|gb|ACY96571.1| dimethyladenosine transferase [Thermomonospora curvata DSM 43183]
          Length = 316

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 17/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K +GQNF++D N +++I   +   +   V+E+G G G+LT  LL
Sbjct: 10  PAEVRELAARLGVRPTKTLGQNFVIDANTVRRIVREADLDETDVVVEVGPGLGSLTLALL 69

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
               ++V+ IE D      L    +  + +  +RLE++  DAL+V          P  ++
Sbjct: 70  ER-VQRVVAIEIDPVLAGQLPHTVRRRAPRLADRLEVVHADALRVTE---LPGPPPTALV 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + ++A    P      ++ Q EV ER+ A+     YG  SV   W  
Sbjct: 126 ANLPYNVAVPVVLHLLAA---FPTLRRGLVMVQAEVAERLVARPGGKVYGVPSVKLAWHA 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
            A     +   VF+P P V S ++ F     P+     E +  +   AF +RRKTLR +L
Sbjct: 183 HARRAGPVGRAVFWPVPNVDSALVAFTRRAEPVAQVSREEVFAVIDAAFAQRRKTLRAAL 242

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E +L  AG++   R E L +  F RI   
Sbjct: 243 AGWAGSAEAAERVLRAAGVDPKARGEALDVAAFARIAQY 281


>gi|170699175|ref|ZP_02890228.1| dimethyladenosine transferase [Burkholderia ambifaria IOP40-10]
 gi|170135900|gb|EDT04175.1| dimethyladenosine transferase [Burkholderia ambifaria IOP40-10]
          Length = 276

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 123/276 (44%), Gaps = 13/276 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIARLATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     L+         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLQQRFGPL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEVVTAAFSQRRKMLRNTLGDYRET 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                 G +   RAE++S+ ++  +   L   +  A
Sbjct: 240 IDFDGLGFDLARRAEDVSVAEYVGVAQALAAVRKAA 275


>gi|237719828|ref|ZP_04550309.1| dimethyladenosine transferase [Bacteroides sp. 2_2_4]
 gi|229451097|gb|EEO56888.1| dimethyladenosine transferase [Bacteroides sp. 2_2_4]
          Length = 266

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 137/261 (52%), Gaps = 8/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                       T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P 
Sbjct: 120 DNKD---IVLCCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++      I  
Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDILF 236

Query: 258 NLRAENLSIEDFCRITNILTD 278
           N R E LS+ +F  +TN + +
Sbjct: 237 NKRPEQLSVAEFIDLTNKVEE 257


>gi|227548244|ref|ZP_03978293.1| dimethyladenosine transferase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079667|gb|EEI17630.1| dimethyladenosine transferase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 284

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/275 (29%), Positives = 133/275 (48%), Gaps = 15/275 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            +  + S   + P K +GQNF+ D N +++I  ++       V+E+G G G+LT  L+  
Sbjct: 11  EVHQLASELGVTPTKKLGQNFVHDPNTVRRIVAAAKLNADDVVVEVGPGLGSLTLGLVDS 70

Query: 69  GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
               V+ +E D +    L    ++ +     RLE++  DAL+V      +   P  ++AN
Sbjct: 71  -VSHVVALEIDPRLAGRLARTVEERADAFATRLEVVCADALRVRRSDVSHA--PTALVAN 127

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +      P    + ++ QKEV +R+ A+  S  YG  SV   +  + 
Sbjct: 128 LPYNVSVPVLLHLLEE---FPTIRRVLVMVQKEVADRLAAEPGSKIYGVPSVKAAFYGRV 184

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           T    I  +VF+P+P + S ++              S+  +   AF +RRKTLR +L  +
Sbjct: 185 TRAGTIGKNVFWPAPNIESGLVRIDVDPKVDRTLRASVFPLVDAAFAQRRKTLRSTLAGV 244

Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
            G     E  L  AGI+  LR E LS++DF R+  
Sbjct: 245 YGSPVAAEQALVAAGIDPGLRGEKLSVDDFVRLAR 279


>gi|107023643|ref|YP_621970.1| dimethyladenosine transferase [Burkholderia cenocepacia AU 1054]
 gi|116690728|ref|YP_836351.1| dimethyladenosine transferase [Burkholderia cenocepacia HI2424]
 gi|170734070|ref|YP_001766017.1| dimethyladenosine transferase [Burkholderia cenocepacia MC0-3]
 gi|122064286|sp|Q1BTQ8|RSMA_BURCA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221651|sp|A0KAD1|RSMA_BURCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729762|sp|B1JY71|RSMA_BURCC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|105893832|gb|ABF76997.1| dimethyladenosine transferase [Burkholderia cenocepacia AU 1054]
 gi|116648817|gb|ABK09458.1| dimethyladenosine transferase [Burkholderia cenocepacia HI2424]
 gi|169817312|gb|ACA91895.1| dimethyladenosine transferase [Burkholderia cenocepacia MC0-3]
          Length = 275

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 120/270 (44%), Gaps = 13/270 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT  L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTGPLIERLATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     L+         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLQQRFGAL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L +I   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEIVTAAFSQRRKMLRNTLGDYRET 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 G +   RAE++S+ ++  +   L 
Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALA 269


>gi|187477205|ref|YP_785229.1| dimethyladenosine transferase [Bordetella avium 197N]
 gi|122064284|sp|Q2KXA2|RSMA_BORA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115421791|emb|CAJ48302.1| dimethyladenosine transferase [Bordetella avium 197N]
          Length = 262

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 11/261 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +   +K  GQ+FL D +++  I  +        ++EIG G   LT  L+    R + V+E
Sbjct: 3   QHQARKRFGQHFLTDESVIDAIVRAIAPARDDAIVEIGPGLSALTAPLIARLNR-LSVVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+      P +L +++ DAL VDF +F    + +R++ NLPYNI + LLF+ 
Sbjct: 62  IDRDLAARLRKKYP--PEQLSVVEADALTVDFRQF---GAGMRVVGNLPYNISSPLLFHL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           + A            + Q+EV +R+ A+  S  YGRLSV+   R +   +FD+ P  F P
Sbjct: 117 MGAAD---LVRDQHFMLQREVIDRMVAEPRSADYGRLSVMLQSRYRMEKLFDVPPEAFDP 173

Query: 198 SPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P+V S V+  +P     P P    + + +   AF +RRK LR+ L            G+
Sbjct: 174 PPRVVSAVVRMVPLGPDRPQPASEAAFEAVVARAFSQRRKMLRRGLGDWAAHVPWDDIGV 233

Query: 256 ETNLRAENLSIEDFCRITNIL 276
               RAE + +  F R+T+ L
Sbjct: 234 PPTARAEEVGVAQFIRLTDAL 254


>gi|254882792|ref|ZP_05255502.1| dimethyladenosine transferase [Bacteroides sp. 4_3_47FAA]
 gi|319643892|ref|ZP_07998475.1| dimethyladenosine transferase [Bacteroides sp. 3_1_40A]
 gi|254835585|gb|EET15894.1| dimethyladenosine transferase [Bacteroides sp. 4_3_47FAA]
 gi|317384509|gb|EFV65475.1| dimethyladenosine transferase [Bacteroides sp. 3_1_40A]
          Length = 280

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/269 (34%), Positives = 136/269 (50%), Gaps = 12/269 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL+I K IA++      + ++E+G G G LTQ ++    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLSIAKDIADTVDVCPDLPILEVGPGMGVLTQFIMQKN-RPVKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++ EK F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLRENFPALEDN--IIEDDFLKLNLEKLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LS+L     K   +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +      C E L K+  +  F +RRKTLR S+  +  +          
Sbjct: 177 PKVKSAVIRMTRNETTELGCNEKLFKLIVKTTFNQRRKTLRNSISSILDKENPLSTDPIF 236

Query: 258 NLRAENLSIEDFCRITN----ILTDNQDI 282
           N R E LS+++F  +TN     L +  DI
Sbjct: 237 NKRPEQLSVQEFIELTNQVEAALKNKTDI 265


>gi|254181754|ref|ZP_04888351.1| dimethyladenosine transferase [Burkholderia pseudomallei 1655]
 gi|184212292|gb|EDU09335.1| dimethyladenosine transferase [Burkholderia pseudomallei 1655]
          Length = 275

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  ++   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLAAPGS 65

Query: 73  -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     L+    +    LE+   DAL  DF           +RII NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IPH            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                 G +   RAE++ ++++ R+   +   +
Sbjct: 240 VDFDALGFDLARRAEDIGVDEYVRVAQAVASAR 272


>gi|89892881|ref|YP_516368.1| hypothetical protein DSY0135 [Desulfitobacterium hafniense Y51]
 gi|219666144|ref|YP_002456579.1| dimethyladenosine transferase [Desulfitobacterium hafniense DCB-2]
 gi|119365023|sp|Q251W8|RSMA_DESHY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807864|sp|B8FY38|RSMA_DESHD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|89332329|dbj|BAE81924.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536404|gb|ACL18143.1| dimethyladenosine transferase [Desulfitobacterium hafniense DCB-2]
          Length = 278

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 146/286 (51%), Gaps = 15/286 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M N ++  + IL        K +GQNFL+D  +++ IA +S     I V+EIG G G LT
Sbjct: 1   MENAANYTRRIL-KGGAKAHKSLGQNFLMDDRVIEAIAAASIKDPEIPVVEIGPGLGVLT 59

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           ++L    A+KV  +E D+    +L+      P  ++I+  DALK+D +  +     + ++
Sbjct: 60  RVLA-QKAQKVWAVELDRGKVNLLQRELQGLP--VDILNMDALKLDLKDIWGTGKGV-LV 115

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPY I + LL +++          S+ ++ QKEV +R+ A+     YG LS+      
Sbjct: 116 GNLPYYITSPLLMHFLEQKD---SLASMVVMVQKEVADRLVAKPGGKDYGILSIAAQVSA 172

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSL 241
           +   +F++ P  F+P+PKVTS V+ F     P      +   ++ + AF +RRKTL  SL
Sbjct: 173 QGEKLFEVPPQAFWPAPKVTSAVVRFELRSYPGFRVKEKDFFRVVKAAFSQRRKTLGNSL 232

Query: 242 KRLGGE------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
               G        +L  AG++   RAE LSI++F  +T  +  N D
Sbjct: 233 AGGLGLPKQQIGEILAAAGVDEQRRAETLSIDEFQAVTEAVMKNLD 278


>gi|224538112|ref|ZP_03678651.1| hypothetical protein BACCELL_03003 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520240|gb|EEF89345.1| hypothetical protein BACCELL_03003 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 271

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +  G+ ++E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDACPGLPILEVGPGMGVLTQFLV-RKERPVKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++ ++ F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREEYPSLEDN--IIEDDFLKMNLQRLFD-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LS+L     +   +F +  HVF P 
Sbjct: 120 DNKELIP---CCTGMIQKEVAERIAAGPGSKTYGILSILIQAWYRVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++      +  
Sbjct: 177 PKVKSAVIRMTRNETKELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+++F  +TN + 
Sbjct: 237 NKRPEQLSVQEFISLTNRVE 256


>gi|153807426|ref|ZP_01960094.1| hypothetical protein BACCAC_01706 [Bacteroides caccae ATCC 43185]
 gi|149129788|gb|EDM21000.1| hypothetical protein BACCAC_01706 [Bacteroides caccae ATCC 43185]
          Length = 266

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/260 (34%), Positives = 135/260 (51%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++      + ++E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDPFPELPILEVGPGMGVLTQFLVK-KERPVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P 
Sbjct: 120 DNKDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G+          
Sbjct: 177 PKVKSAVIRMTRNDTQELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKECPLTEDTLF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+E+F  +TN + 
Sbjct: 237 NKRPEQLSVEEFIDLTNKVE 256


>gi|148264355|ref|YP_001231061.1| dimethyladenosine transferase [Geobacter uraniireducens Rf4]
 gi|146397855|gb|ABQ26488.1| dimethyladenosine transferase [Geobacter uraniireducens Rf4]
          Length = 275

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/270 (34%), Positives = 143/270 (52%), Gaps = 16/270 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI  KK MGQNFL+D N+L +I ++        ++E+G G G LT +L+   A +V+ +E
Sbjct: 3   KIRAKKSMGQNFLVDRNVLTRIVDAVNISAEDRILEVGPGKGALTALLVERAA-QVLAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNIGTRLLF 135
            D+Q  P L    +   N +E +Q D LKV+  +      S   ++ ANLPYNI +++LF
Sbjct: 62  LDRQLVPFLAREFAPQKN-VEFVQGDILKVNLSELLMDRWSGAWKVAANLPYNISSQVLF 120

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            ++     P  +  L L+ QKEVG+R+ A      YG LSV        + +  + P  F
Sbjct: 121 KFLDN---PKLFSLLILMLQKEVGDRLIAAPGCKDYGILSVFCRLHFDISRVLIVKPGSF 177

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKR--LGGE---- 247
            P PKV S V+ F+P   P     +    +K+ + AF +RRKTL   LK   LG +    
Sbjct: 178 TPVPKVDSVVLKFVPLPAPRVDVEDESFFRKVVKAAFSQRRKTLWNCLKSSELGVDGDVL 237

Query: 248 -NLLHQAGIETNLRAENLSIEDFCRITNIL 276
            +LL + GI+ + R E LS+++F  +T  +
Sbjct: 238 LSLLTKCGIDGSRRGETLSLDEFAVLTRAI 267


>gi|198282486|ref|YP_002218807.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|226729745|sp|B5EL84|RSMA_ACIF5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|198247007|gb|ACH82600.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 268

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 129/258 (50%), Gaps = 8/258 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK  GQNFL+   I+++I  +     G  ++EIG GPG LT+ LL L   +  V+E D
Sbjct: 9   RAKKRFGQNFLVQPQIVERIVAAIRPASGDHLVEIGPGPGALTKSLLRLLP-QFTVVELD 67

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +     L+ ++   P +L ++Q DAL+VDF       + +RI+ NLPYN+ T L+F+ + 
Sbjct: 68  RDMIAGLRALAP--PEQLRVLQADALEVDFAALAGAGNALRIVGNLPYNVATPLIFHILE 125

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                     +  + QKEV +R+ A   S  YGRLSV+         +F ++P  FFP P
Sbjct: 126 HAEQ---VRDMHFMLQKEVVDRVVAMPGSKAYGRLSVMIQAYCAVESLFTVAPGNFFPVP 182

Query: 200 KVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S  +  IPH      P       +I   +F +RRKTL  +L+ +   + L    I+ 
Sbjct: 183 KVDSAFMRLIPHRPGLLPPHLQAPFARIVATSFAQRRKTLANNLRGILSADDLRGLQIDP 242

Query: 258 NLRAENLSIEDFCRITNI 275
             RAE L    F R+   
Sbjct: 243 GSRAETLDQAAFFRLAEA 260


>gi|304320043|ref|YP_003853686.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503]
 gi|303298946|gb|ADM08545.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503]
          Length = 273

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 111/279 (39%), Positives = 158/279 (56%), Gaps = 9/279 (3%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    + T++  + ++ KK +GQ+FLLD+NI +KIA       G  VIEIG GPG 
Sbjct: 1   MPPMSDLPPVGTVVRSHGLLAKKTLGQHFLLDMNITRKIAALCALSPGEDVIEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA  +  IE+D +  PIL +IS+  P +L  ++ DAL VD+           
Sbjct: 61  LTRALLEAGA-ALTTIERDDRIVPILSEISAAFPGQLTPLEGDALSVDYRALMPGGG--V 117

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I +NLPYNI T LL  W++    P  W  + L+FQ+EVG+RI A   S  YGRLSVL+  
Sbjct: 118 IASNLPYNISTELLVRWLTLSPRP--WRRMVLMFQREVGDRILASPGSKAYGRLSVLSQI 175

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             + T+ F +    F P PKV S+V+ F+P     P  + +L+++T  AFG+RRK +R++
Sbjct: 176 AARPTLGFHLPARAFTPPPKVASSVLVFLPPATE-PQNVAALERVTAAAFGQRRKMIRKT 234

Query: 241 LKRLGGEN---LLHQAGIETNLRAENLSIEDFCRITNIL 276
           L  L GE    LL   G+    RAE LS+E F  +   L
Sbjct: 235 LAPLYGEKLGPLLDGLGLLPTQRAEELSVETFRALAEAL 273


>gi|257066995|ref|YP_003153251.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548]
 gi|256798875|gb|ACV29530.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548]
          Length = 280

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 137/284 (48%), Gaps = 13/284 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        +K I+  Y     K +GQNFL+D N ++KI +++   D   V+EIG G G 
Sbjct: 1   MKKLYSPKVVKDIIDLYNFRFSKSLGQNFLIDKNFVEKIVDAADV-DSSNVLEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           +T  +    A+KV+ IE D    PI+ +   +  N  ++I +D LK D  +         
Sbjct: 60  ITYEMAKT-AKKVVAIEIDSSLIPIIGENMEEFDN-FKLIHEDILKADLGRIIEEEFAGE 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             ++++NLPY I T ++   I  D        +T++ QKEV +R+ A + S  Y  LSV 
Sbjct: 118 DFKVVSNLPYYITTPIIEKLIETDLP---CRDMTIMVQKEVADRMLADEKSKDYSSLSVF 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             + + A  + ++   VF P PK+ STV+             + L  +    F KRRKT+
Sbjct: 175 IKYYSDAEKITNVPKSVFMPQPKIDSTVLKLNLRKYRDDVDEKKLFALVHAGFNKRRKTI 234

Query: 238 RQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277
             SL     +        + GI+ NLRAENLS++DF  +T  + 
Sbjct: 235 LNSLSDACEKEKLRLAFDKLGIKNNLRAENLSLDDFINLTKTIE 278


>gi|218666666|ref|YP_002424676.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|254807853|sp|B7J3R3|RSMA_ACIF2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218518879|gb|ACK79465.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 267

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 129/258 (50%), Gaps = 8/258 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK  GQNFL+   I+++I  +     G  ++EIG GPG LT+ LL L   +  V+E D
Sbjct: 8   RAKKRFGQNFLVQPQIVERIVAAIRPASGDHLVEIGPGPGALTKSLLRLLP-QFTVVELD 66

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +     L+ ++   P +L ++Q DAL+VDF       + +RI+ NLPYN+ T L+F+ + 
Sbjct: 67  RDMIAGLRALAP--PEQLRVLQADALEVDFAALAGAGNALRIVGNLPYNVATPLIFHILE 124

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                     +  + QKEV +R+ A   S  YGRLSV+         +F ++P  FFP P
Sbjct: 125 HAEQ---VRDMHFMLQKEVVDRVVAMPGSKAYGRLSVMIQAYCAVESLFTVAPGNFFPVP 181

Query: 200 KVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S  +  IPH      P       +I   +F +RRKTL  +L+ +   + L    I+ 
Sbjct: 182 KVDSAFMRLIPHRPGLLPPHLQAPFARIVATSFAQRRKTLANNLRGILSADDLRGLQIDP 241

Query: 258 NLRAENLSIEDFCRITNI 275
             RAE L    F R+   
Sbjct: 242 GSRAETLDQAAFFRLAEA 259


>gi|58336557|ref|YP_193142.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM]
 gi|227903108|ref|ZP_04020913.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796]
 gi|62900454|sp|Q5FMG3|RSMA_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|58253874|gb|AAV42111.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM]
 gi|227869094|gb|EEJ76515.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796]
          Length = 294

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 20/281 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I++ Y +  KK +GQNFL+D + +  I E++    G  VIEIG G G+LT+ LL  G
Sbjct: 13  TKAIINRYFVKAKKNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAG 72

Query: 70  ARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK----FFNISSPI 119
           A KV   E D     IL +            +R +++  D LK DF+     FF++  PI
Sbjct: 73  A-KVFAYEVDDSLPEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQPI 131

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ A+  +  YG L++   
Sbjct: 132 KVVANLPYYITTPIIFALSESDLH---FSSLTLMMQKEVAERLEAKPGNKEYGPLTISVQ 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLR 238
                 +  ++    F P PKV S+V+   P    P     +    + +  F +RRKTL 
Sbjct: 189 TEMNVKIALEVKSTSFMPRPKVDSSVVVLTPLQERPKIENRKHFIWVVKMCFSQRRKTLN 248

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
            +LK L       E L+ + G++  +R E+L+I+ F  I  
Sbjct: 249 NNLKALIPNAKEREALISKLGVDPRVRPEDLTIDQFIEIAR 289


>gi|197118669|ref|YP_002139096.1| dimethyladenosine transferase [Geobacter bemidjiensis Bem]
 gi|197088029|gb|ACH39300.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
           [Geobacter bemidjiensis Bem]
          Length = 275

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 94/278 (33%), Positives = 145/278 (52%), Gaps = 17/278 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI  KK  GQNFL+D ++L +I           ++E+G G G L+++L   GAR  + +E
Sbjct: 3   KIRAKKEFGQNFLVDDSVLTRIVACVAPTKDDCILEVGPGRGALSRLLAESGAR-FLAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTRLL 134
            D++  P+LK   + +PN +EI   D L+VD              ++ ANLPYNI +++L
Sbjct: 62  WDRELLPLLKAEFATNPN-VEIGHGDILRVDLPLLLGSRAEGKKWKVAANLPYNISSQVL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F ++        +E L L+ QKEVG+R+TA      YG L+VL          F + P  
Sbjct: 121 FRFMEHSE---LFEKLVLMLQKEVGDRLTAPPACKEYGALTVLLRLHFDIRREFIVKPGS 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248
           F P PKV S V+ F+P   P       E  +++ + AF +RRKTL  SL+  G ++    
Sbjct: 178 FRPVPKVDSAVLSFLPLSGPRVEVGDEELFRRVVKGAFLQRRKTLLNSLRSSGFDDADGF 237

Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
               L ++GI+   R E LS+E+F  +T  L+  + +A
Sbjct: 238 LSAALSRSGIDGGRRGETLSLEEFACLTRELSAGKTLA 275


>gi|311743178|ref|ZP_07716986.1| dimethyladenosine transferase [Aeromicrobium marinum DSM 15272]
 gi|311313858|gb|EFQ83767.1| dimethyladenosine transferase [Aeromicrobium marinum DSM 15272]
          Length = 309

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 18/281 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     + P K  GQNF++D N +++I   SG      V+EIG G G+LT  LL
Sbjct: 22  ATDIRRLAEQVGVRPTKQRGQNFVIDANTVRRIVRVSGVGPTDVVVEIGPGLGSLTLALL 81

Query: 67  TLGARKVIVIEKDQQFFPIL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIAN 124
            + AR+V+ +E D      L   ++ + P R +E++  DA++V         +P  ++AN
Sbjct: 82  EV-ARRVVAVEIDPALAGGLPATLADRAPGRDVEVVLADAMRVTE---LPGPAPTALVAN 137

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L  W  A    P   S  ++ Q EV  R+ A   S  YG  SV   W  + 
Sbjct: 138 LPYNVSVPVLLTWFEA---FPSITSGLVMVQAEVAHRLAAAPGSKIYGVPSVKAAWYAQV 194

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQS 240
            +   +   VF+P+P V S ++ +           E L++    +   AF +RRKTLR +
Sbjct: 195 ELAGTVGRQVFWPAPNVDSALVAWRRRPPGTELGDERLRRTTFAVVDAAFAQRRKTLRAA 254

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L  L G     E  L  AGI+   R E L + D+ R+   L
Sbjct: 255 LAGLAGSPDVAEAALLAAGIDPRTRGEQLDVHDYVRLAAHL 295


>gi|227877971|ref|ZP_03995975.1| dimethyladenosine transferase [Lactobacillus crispatus JV-V01]
 gi|256844351|ref|ZP_05549837.1| dimethyladenosine transferase [Lactobacillus crispatus 125-2-CHN]
 gi|256849246|ref|ZP_05554679.1| dimethyladenosine transferase [Lactobacillus crispatus MV-1A-US]
 gi|312978360|ref|ZP_07790102.1| dimethyladenosine transferase [Lactobacillus crispatus CTV-05]
 gi|227862441|gb|EEJ69956.1| dimethyladenosine transferase [Lactobacillus crispatus JV-V01]
 gi|256613429|gb|EEU18632.1| dimethyladenosine transferase [Lactobacillus crispatus 125-2-CHN]
 gi|256714022|gb|EEU29010.1| dimethyladenosine transferase [Lactobacillus crispatus MV-1A-US]
 gi|310894703|gb|EFQ43775.1| dimethyladenosine transferase [Lactobacillus crispatus CTV-05]
          Length = 294

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 98/295 (33%), Positives = 146/295 (49%), Gaps = 23/295 (7%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT N         + I++ Y +  KK +GQNFL+D   +  I E++G      VIEIG G
Sbjct: 1   MTNNIPIGSPVRTQAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDAL----KV 107
            G+LT+ LL  GA KV   E D     IL++            +R ++I  D L    KV
Sbjct: 61  IGSLTEQLLLAGA-KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDVLKADFKV 119

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   FF+ + PI+++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ AQ  
Sbjct: 120 DISDFFDFTKPIKVVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPG 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKIT 226
           S  YG L++         +   +S + F P PKV S+V+   P    P     +    + 
Sbjct: 177 SKEYGPLTISVQTEMNVKLALQVSHNSFMPRPKVDSSVVVLTPLKEKPAIENRKHFIWVV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +  F +RRKTL  +LK L       + L  + G+   +R E L+I+ F +I + +
Sbjct: 237 KMCFSQRRKTLNNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291


>gi|241068617|ref|XP_002408487.1| ribosomal RNA adenine dimethylase, putative [Ixodes scapularis]
 gi|215492475|gb|EEC02116.1| ribosomal RNA adenine dimethylase, putative [Ixodes scapularis]
          Length = 278

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 105/280 (37%), Positives = 153/280 (54%), Gaps = 15/280 (5%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + ++I P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHAASHQINPLKKYGQNFIFDSSLCDKIVHASNLAENSRVLEIGPGTGGLTRSILQ 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--------NISSPI 119
                + VIE D++  P+L +I   +PN L II+ DALK++             +I   +
Sbjct: 63  KKPESLTVIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSSKSIDYKV 121

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            II+NLPY+IGT L+  W+          ++TL+ QKEV ERI A  ++  YGRLSV+  
Sbjct: 122 TIISNLPYHIGTELVIRWLKEAR---LINNMTLMLQKEVVERICAMPSTKAYGRLSVICQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLR 238
              K    FD++P  F+P PKV S ++  IP  NP    L   +++IT+ AF  RRK ++
Sbjct: 179 LIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIK 238

Query: 239 QSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276
            SLK L      +L Q  I  N RAENL+ +D+ RI  IL
Sbjct: 239 SSLKNLVPNIHEVLTQLKINDNYRAENLTPQDYLRIAEIL 278


>gi|167901379|ref|ZP_02488584.1| dimethyladenosine transferase [Burkholderia pseudomallei NCTC
           13177]
          Length = 275

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 13/273 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  ++   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGS 65

Query: 73  -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     L+    +    LE+   DAL  DF           +RII NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLEQRFGEL---LELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLMS---FAPVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IPH            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                 G +   RAE++ ++++ R+   +   +
Sbjct: 240 VDFDALGFDLARRAEDVGVDEYVRVAQAVASAR 272


>gi|300781662|ref|ZP_07091516.1| dimethyladenosine transferase [Corynebacterium genitalium ATCC
           33030]
 gi|300533369|gb|EFK54430.1| dimethyladenosine transferase [Corynebacterium genitalium ATCC
           33030]
          Length = 302

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 136/287 (47%), Gaps = 18/287 (6%)

Query: 1   MTMNN--KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD---GITVIEIG 55
           MT +       ++ +    ++ P K +GQNF+ D N +++I  ++   +      V+E+G
Sbjct: 20  MTTSQLLGPAEIRALAEELEVSPTKKLGQNFVHDPNTVRRIVAAADLEEPGIAEMVLEVG 79

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFF 113
            G G+LT  L+ + A  V+ +E D +    L + +++    ++L ++  DAL V +    
Sbjct: 80  PGLGSLTLGLIDV-ANHVVAVEIDPRLAAKLPETAAERSDADKLTVLNMDALMVSYADL- 137

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P  ++ANLPYN+   +L + +      P    + ++ Q EV +R+ A   S  YG 
Sbjct: 138 -DREPTALVANLPYNVAVPVLLHLLEE---FPSIRRVLVMVQLEVADRLAAAPGSKIYGV 193

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233
            SV   +         I  +VF+P+P + S ++    +          +  +   AF +R
Sbjct: 194 PSVKASFYGDVRKAGTIGKNVFWPAPNIESGLVRIDVNETFDRSLRPKVFPLIDAAFAQR 253

Query: 234 RKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           RKTLR  L  + G     E  L  AGI+  LR E LS+EDF R+  +
Sbjct: 254 RKTLRACLTGVYGSGPAAEEALRAAGIDPGLRGEKLSVEDFVRLAEV 300


>gi|218283941|ref|ZP_03489809.1| hypothetical protein EUBIFOR_02405 [Eubacterium biforme DSM 3989]
 gi|218215520|gb|EEC89058.1| hypothetical protein EUBIFOR_02405 [Eubacterium biforme DSM 3989]
          Length = 289

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 89/273 (32%), Positives = 138/273 (50%), Gaps = 15/273 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I   YK+  KK  GQNF+++  +++KIA ++       V EIG G G LTQ L    
Sbjct: 11  TKEIQEKYKVFTKKSFGQNFIIEPGVVEKIANAAIQSRDELVFEIGPGIGALTQFLCE-K 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANL 125
           + +V+  E D++   +L++      + L+I+ +D LKVD ++    F      +   +NL
Sbjct: 70  SDQVVAFEIDERLPVVLENEIGF--DHLQIVLEDILKVDIDEKIREFRKPGQKVVFASNL 127

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +LF    A+      E +T++ QKEVGER  A +N   Y  LSV+T +R    
Sbjct: 128 PYYITTPILFKLFEANE---EIERITVMMQKEVGERFLAHENDKEYNALSVITQYRCDVK 184

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL- 244
            + D+S  VF+PSP V S VI F  H             + +  F +RRKT+  + +   
Sbjct: 185 KVMDVSRRVFWPSPNVDSMVIQFSFHHKYHLEDENYFFDLVKACFTQRRKTIYNNFQNFV 244

Query: 245 ----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
                 + LL Q  I+ + RA+  ++EDF R+ 
Sbjct: 245 KDKTLAKQLLEQVNIDPSTRAQQCTLEDFIRLY 277


>gi|294789043|ref|ZP_06754283.1| dimethyladenosine transferase [Simonsiella muelleri ATCC 29453]
 gi|294483145|gb|EFG30832.1| dimethyladenosine transferase [Simonsiella muelleri ATCC 29453]
          Length = 258

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 85/260 (32%), Positives = 126/260 (48%), Gaps = 11/260 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L T    ++ V E 
Sbjct: 4   HKARKRFGQNFLQDTRIISDIVNAVRPQADDIVIEIGPGLAAITEPL-TRKLNQLHVCEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK       N+L I   D L+ DF          +I+ NLPYNI T LLF   
Sbjct: 63  DRDIIQFLKK--QPFANKLVIHDGDVLQFDFRSIV---GKKKIVGNLPYNISTPLLFRL- 116

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   +  YGRLSV+  +     ++ ++ P  F P+
Sbjct: 117 --ADVADDVIDMHFMLQKEVVERMVAVPKTNDYGRLSVMLQYFFDMELLIEVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP LN I      +    + +++F +RRKT+R +LK +  ++ L   GIE
Sbjct: 175 PKVDSAVVRMIPVLNRIGKAENFKHFSDLVRDSFHQRRKTIRNNLKNIANDDDLLAVGIE 234

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE ++ E + +++N L
Sbjct: 235 PQQRAEEIAPELYVKLSNYL 254


>gi|33242431|ref|NP_877372.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183]
 gi|33236942|gb|AAP99029.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183]
          Length = 277

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 100/279 (35%), Positives = 143/279 (51%), Gaps = 14/279 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT ++ +  L   LS  +  PKK + QNFL+D NI+KKI  +S  +    V+EIG G G 
Sbjct: 1   MTRSSPA-QLSRFLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L+  GA +VI IEKD  F P L+++    P RLEII      +D  + +      R
Sbjct: 60  LTEELIAAGA-QVIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYTTLGKGR 114

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY+I T LL         P FW+++T++ Q EV  RI AQ     YG L++   +
Sbjct: 115 VVANLPYHITTPLLTKLFLEA--PDFWKTVTVMVQDEVARRIVAQPGGKDYGSLTIFLQF 172

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLR 238
                  F +S   F+P P+V S VIH            E      +T+ AF +RRK L 
Sbjct: 173 FADIHYAFKVSASCFYPKPQVQSAVIHMKVKETLPLSDEEIPVFFTLTRTAFQQRRKVLA 232

Query: 239 QSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRIT 273
            +LK L      E  L + G+  N+R E LS+ D+  + 
Sbjct: 233 NTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDYLALF 271


>gi|332828677|gb|EGK01369.1| ribosomal RNA small subunit methyltransferase A [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 266

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 90/260 (34%), Positives = 136/260 (52%), Gaps = 9/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL DL+I ++IA++      + VIE+G G G LTQ L+    R++ V+E 
Sbjct: 4   VKAKKFLGQHFLKDLDIARRIADTLDDFPDVPVIEVGPGMGVLTQFLIEKK-RELTVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   P L +          II+DD LK+D  K ++  +   +I N PYNI +++ F  +
Sbjct: 63  DRDSVPYLNEHYPALQG--HIIEDDFLKLDLLKIYD--NQFCVIGNYPYNISSQIFFKVL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     + + QKEV ERI A+     YG LSVL         +F +S  VF P 
Sbjct: 119 DYKNHIP---CCSGMLQKEVAERIAAKPGGKTYGILSVLLQAWYDIEYLFTVSEKVFDPP 175

Query: 199 PKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S V+  +      + C  +  K + +  F +RRKTLR S+K L G++         
Sbjct: 176 PKVKSAVVKLVRNKRQSLDCDEKLFKTVVKTGFNQRRKTLRNSMKPLLGKDCDAYTDPIF 235

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+ DF ++TNI+ 
Sbjct: 236 NERPERLSVADFEKLTNIVA 255


>gi|255691159|ref|ZP_05414834.1| dimethyladenosine transferase [Bacteroides finegoldii DSM 17565]
 gi|260623254|gb|EEX46125.1| dimethyladenosine transferase [Bacteroides finegoldii DSM 17565]
          Length = 262

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 90/261 (34%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KDRLVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLED--HIIEDDFLKMNLHRLFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +S HVF P 
Sbjct: 120 DNKDIIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++         
Sbjct: 177 PKVKSAVIRMTRNEVQELGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDSLF 236

Query: 258 NLRAENLSIEDFCRITNILTD 278
           N R E LS+E+F  +TN + +
Sbjct: 237 NKRPEQLSVEEFIDLTNKVEE 257


>gi|329947570|ref|ZP_08294729.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328523885|gb|EGF50965.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 367

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 131/282 (46%), Gaps = 16/282 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     I P K +GQNF+ D   +++I  S+G     TV+EIG G G+LT  LL
Sbjct: 69  PTEVRGLSQALGIRPTKTLGQNFVHDAGTVRRIVRSAGVRPDDTVLEIGPGLGSLTLALL 128

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKF--FNISSPIR 120
             GAR V  +E D      L     D   +   RL +I+ DAL +  E         P R
Sbjct: 129 ETGAR-VSAVEIDPVLARALPVTVADRMPEAAGRLGVIEADALSITAEALSGAEQPPPTR 187

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+   +L   + A    P  E++T++ Q EV +R+ A   S  YG  SV   W
Sbjct: 188 LVANLPYNVAVPVLLTVLEA---LPSLETVTVMVQAEVADRLAAAPGSRTYGVPSVKAAW 244

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239
              A     IS HVF+P P V S ++  +    P      E +  +   AF +RRKTLR+
Sbjct: 245 YAAARRTLTISRHVFWPVPNVDSALVELVRRRPPTTRATREQVFAVVDAAFAQRRKTLRK 304

Query: 240 SLKRLGGENLLHQA-----GIETNLRAENLSIEDFCRITNIL 276
           +L    G     +A     GI+   R E L I  F  +   L
Sbjct: 305 ALAEAAGGADAAEAALRATGIDPTRRGETLDITAFAALAEAL 346


>gi|222528417|ref|YP_002572299.1| dimethyladenosine transferase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455264|gb|ACM59526.1| dimethyladenosine transferase [Caldicellulosiruptor bescii DSM
           6725]
          Length = 291

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 147/278 (52%), Gaps = 13/278 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              L ++L  Y + P K +GQNFL+D N+++KI       +G  VIEIGAGPG LT  L 
Sbjct: 16  KTELLSLLEKYGLSPNKKLGQNFLVDENVVRKII-LFSQTEGKEVIEIGAGPGTLTVYLA 74

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
              A+KV+ +E D++   +LKD+    PN ++I+  D L+++ +   N  + + ++ NLP
Sbjct: 75  KT-AQKVVAVEIDKKILNVLKDVCQNLPN-VQIVNSDFLELNVKNLTN-GNKVYVVGNLP 131

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y + +++LF            E  T++ QKEV +R+ A+  +  YG L+V   +  +   
Sbjct: 132 YYVTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNFYCEIED 188

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            F +S +VF+P P+V S V+     +       +   KI    F  RRKT+  +L     
Sbjct: 189 YFYVSKNVFYPKPEVDSAVLRARFKVEEPNVDEKKFFKIVHACFSTRRKTILNALSNQLD 248

Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                 + ++  AG++ NLRAE+LS++D+ R+     +
Sbjct: 249 IAKDELKKIILMAGLDENLRAEDLSLDDYIRLYQCFEE 286


>gi|171317313|ref|ZP_02906509.1| dimethyladenosine transferase [Burkholderia ambifaria MEX-5]
 gi|171097512|gb|EDT42350.1| dimethyladenosine transferase [Burkholderia ambifaria MEX-5]
          Length = 276

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 123/276 (44%), Gaps = 13/276 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     L+         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLQQRFGPL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEVVTAAFSQRRKMLRNTLGDYRET 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                 G +   RAE++S+ ++  +   L   +  A
Sbjct: 240 IDFDGLGFDLARRAEDVSVAEYVGVAQALAAVRKAA 275


>gi|270294487|ref|ZP_06200689.1| dimethyladenosine transferase [Bacteroides sp. D20]
 gi|270275954|gb|EFA21814.1| dimethyladenosine transferase [Bacteroides sp. D20]
          Length = 264

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 90/260 (34%), Positives = 139/260 (53%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++      I ++E+G G G LTQ LL    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDVCPEIPILEVGPGMGVLTQFLLP-KERNVKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q  +   II+DD LK++ ++ F       +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPQLEDN--IIEDDFLKMNLQRLFG-GQAFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     K   +F +  HVF P 
Sbjct: 120 EYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYKVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI  + +  + + C  +  K++ +  F +RRKTLR S+K + G++      +  
Sbjct: 177 PKVKSAVIRMMRNETHDLGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDVLF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+++F ++TN + 
Sbjct: 237 NKRPEQLSVKEFIQLTNQVE 256


>gi|255325442|ref|ZP_05366546.1| dimethyladenosine transferase [Corynebacterium tuberculostearicum
           SK141]
 gi|255297528|gb|EET76841.1| dimethyladenosine transferase [Corynebacterium tuberculostearicum
           SK141]
          Length = 300

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 136/278 (48%), Gaps = 20/278 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     I+P K +GQNFL D N +++I  ++       V+E+G G G+LT  L+  
Sbjct: 28  EIRALAEKLDIVPTKKLGQNFLHDPNTIRRIVAAAELDPTDRVLEVGPGLGSLTLGLVE- 86

Query: 69  GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
               V  +E D +    L     + + ++  RL +++ DAL+V      +++ P  ++AN
Sbjct: 87  AVGDVTAVEIDSRLAAQLPDTVAERAPEYAQRLRVVEKDALRVTDS---DVTEPTALVAN 143

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +      P    + ++ Q EV +R+ AQ  S  YG  SV  G+  K 
Sbjct: 144 LPYNVAVPVLLHLLET---FPSIRRVLVMVQLEVADRLAAQPGSKVYGVPSVKAGFYGKV 200

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKK---ITQEAFGKRRKTLRQS 240
           +    I  +VF+P+P + S ++      + P P   ES  K   +   AF +RRKTLR +
Sbjct: 201 SKAGTIGKNVFWPAPNIESGLVRIDVFEDAPWPITDESRSKVWPVIDAAFAQRRKTLRAA 260

Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           L    G        L  A I+   R E L++EDF R+ 
Sbjct: 261 LSGHFGSGAAAEEALRAADIDPKQRGEKLAVEDFVRLA 298


>gi|163786670|ref|ZP_02181118.1| dimethyladenosine transferase [Flavobacteriales bacterium ALC-1]
 gi|159878530|gb|EDP72586.1| dimethyladenosine transferase [Flavobacteriales bacterium ALC-1]
          Length = 262

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 93/267 (34%), Positives = 135/267 (50%), Gaps = 9/267 (3%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
            +H ++  KK++GQ+FL D +I + IA+S        V+EIG G G LT+ LL       
Sbjct: 2   ANHNQVKAKKHLGQHFLTDESIAQDIADSLSLEGYKDVLEIGPGMGVLTKYLLK-KETTT 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D +    LK+      +R  I + D LK D    F    P  II N PYNI +++
Sbjct: 61  HVIEIDTESVEYLKNNYLNLADR--IYEKDFLKYDLNLIFK-DKPFAIIGNFPYNISSQI 117

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF  +      P +  +   FQKEV +RI +++ S  YG LSVLT     A  +F + P 
Sbjct: 118 LFKTLELRHQIPEFSGM---FQKEVAKRICSKEGSKVYGILSVLTQAFYNADYLFTVPPT 174

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           VF P PKV S V+      N  +PC  +   ++ +  F +RRKTLR SLK     + L  
Sbjct: 175 VFNPPPKVDSGVLLLKRKENFKLPCDEKLFFRVVKTGFQQRRKTLRNSLKTFNLSDNLKA 234

Query: 253 AGIETNLRAENLSIEDFCRITNILTDN 279
             I    R E LS+  F  +T+++ ++
Sbjct: 235 NTI-FGQRPEQLSVSKFIELTSLIEND 260


>gi|227537514|ref|ZP_03967563.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242651|gb|EEI92666.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 259

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 132/261 (50%), Gaps = 10/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  KK++GQ+FL D N  +KI ++     G   V+E+G G G L+  LL     +  +I+
Sbjct: 4   VRAKKHLGQHFLNDKNAAQKIVDALDPKLGFSHVLEVGPGMGVLSDFLLQKPEYQTYLID 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    L D   +  +RL  I  D L +DF K+F     + +I N PYNI +++LF  
Sbjct: 64  VDDESIEFLADKYPELGDRL--IHGDFLALDFSKYF--GPKMAVIGNFPYNISSQILFKI 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +           +T +FQKEV ER TA+  S  YG LSV          +F +    F P
Sbjct: 120 LDERQ---RVVQMTGMFQKEVAERCTAKAGSKEYGILSVFLQAYYHVEYLFTVKAGAFTP 176

Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    +    + C  +   ++ +  F +RRKTLR SL  +  ++ +    + 
Sbjct: 177 PPKVLSGVIRMTRNEREELDCDEKLFWRVVKAGFNQRRKTLRNSLSGVVPKDKMSDNPLY 236

Query: 257 TNLRAENLSIEDFCRITNILT 277
             LRAE LS+EDF ++TN ++
Sbjct: 237 E-LRAERLSVEDFVQLTNEIS 256


>gi|39996962|ref|NP_952913.1| dimethyladenosine transferase [Geobacter sulfurreducens PCA]
 gi|62900555|sp|Q74C12|RSMA_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|39983850|gb|AAR35240.1| dimethyladenosine transferase [Geobacter sulfurreducens PCA]
          Length = 276

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 90/270 (33%), Positives = 137/270 (50%), Gaps = 16/270 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I  +K +GQNFL D ++L +IA    +  G  ++EIG G G LT  L    A +++ +E
Sbjct: 5   GIRARKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEQ-AGQLVAVE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135
            D +  P+L+   + +P+ + II+ D L +D  +      + P ++ ANLPYNI T +LF
Sbjct: 64  LDDRLVPLLRGSFAGNPS-VTIIEGDILDLDLRETLGRYGTPPWKVAANLPYNISTPVLF 122

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             + A      +  L L+ QKEVG R+ A   S  YG LSVL       T    + P  F
Sbjct: 123 RLLDARD---LFSRLVLMLQKEVGNRLAAGPGSKEYGVLSVLFQLHFDVTREILVRPGSF 179

Query: 196 FPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLK-------RLGG 246
            P PKV S V+ F+P   P       +  +++ + +F  RRKTL   LK         G 
Sbjct: 180 HPVPKVDSVVLLFVPLAQPRVDVGDEDYFRRVVKASFAMRRKTLWNCLKGGALGVPTDGI 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            ++L + GI+   R E LS+++F  +T  L
Sbjct: 240 RDVLARCGIDEGRRGETLSLQEFASLTKGL 269


>gi|254373987|ref|ZP_04989469.1| dimethyladenosine transferase [Francisella novicida GA99-3548]
 gi|151571707|gb|EDN37361.1| dimethyladenosine transferase [Francisella novicida GA99-3548]
          Length = 262

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 96/266 (36%), Positives = 135/266 (50%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHNIVVEIGPGLGALTRYLL-SSSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134
           +E D      L     ++     I   D LK D     N S   I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS  YGRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSYGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           F+P PKV S ++   P     +       ++I +++F +RRKTL  +LK +  E  +   
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKGILKERKIDPS 236

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|167626494|ref|YP_001676994.1| dimethyladenosine transferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189028809|sp|B0TZ54|RSMA_FRAP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|167596495|gb|ABZ86493.1| dimethyladenosine transferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 262

 Score =  258 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 94/271 (34%), Positives = 138/271 (50%), Gaps = 19/271 (7%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ +L   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDIVLEIGPGLGALTRYILK-CSDNVNV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134
           +E D      L     ++    ++  +D LK D +    +    +++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLLQNCQKY-GEPKVFNEDFLKFDLDIVRADSQQKLKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +Q NS  YGRLSV+  +    +M+ +I P V
Sbjct: 120 FKVIEQSDK---IIDAHFMLQKEVVERIISQPNSKTYGRLSVILQYHFDCSMILNIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F+P PKV S ++   P  N +        + I +++F +RRKTL  +LK      +L + 
Sbjct: 177 FYPQPKVDSAILRLKPKANKLVINDYIFFENIVKQSFAQRRKTLHNNLKG-----ILKEL 231

Query: 254 GIETN-------LRAENLSIEDFCRITNILT 277
            I+ N       LRAENLS+EDF  + N L 
Sbjct: 232 DIDPNTLPVDTKLRAENLSMEDFVSLVNFLK 262


>gi|320179612|gb|EFW54561.1| Dimethyladenosine transferase [Shigella boydii ATCC 9905]
 gi|333010543|gb|EGK29976.1| dimethyladenosine transferase [Shigella flexneri VA-6]
          Length = 249

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 83/250 (33%), Positives = 127/250 (50%), Gaps = 8/250 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  I  +     G  ++EIG G   LT+ +      ++ VIE D+     L+        
Sbjct: 2   IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQ-THPFLGP 59

Query: 96  RLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +L I Q DA+  +F +    +  P+R+  NLPYNI T L+F+  S   +      +  + 
Sbjct: 60  KLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFML 116

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN- 213
           QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PKV S V+  +PH   
Sbjct: 117 QKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATM 176

Query: 214 PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272
           P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+  +RAEN+S+  +C++
Sbjct: 177 PHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQM 236

Query: 273 TNILTDNQDI 282
            N L +N  +
Sbjct: 237 ANYLAENAPL 246


>gi|227888939|ref|ZP_04006744.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200]
 gi|227850527|gb|EEJ60613.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200]
          Length = 294

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 98/295 (33%), Positives = 152/295 (51%), Gaps = 21/295 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +   + + I++ Y +  KK +GQNFL+DL  +K I E++    G  VIEIG G G+
Sbjct: 5   MPIASPVRT-QAIVNRYFMHAKKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGS 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKV----DFE 110
           LT+ LL  GA KV+  E DQ    IL +         +  +R +++  D LK     D +
Sbjct: 64  LTEQLLLAGA-KVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDND 122

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
            F ++S  + I+ANLPY I T ++FN I +D     + SLTL+ QKEV ER+ A+  +  
Sbjct: 123 GFLDLSKSVNIVANLPYYITTPIIFNLIKSDL---DFSSLTLMMQKEVAERLVAKPKTKE 179

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEA 229
           YG LS+    R    +  ++    F P PKV S V+   P L             + +  
Sbjct: 180 YGPLSIAVQSRMNVRLAEEVKSTSFMPRPKVDSAVVVLTPLLEKPDINDYVFFDHVVKMC 239

Query: 230 FGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           F +RRKTL  +LK L       E L++  G++  +R E L++  F ++ ++L D 
Sbjct: 240 FAQRRKTLANNLKTLIKDKNEREKLINDLGLDVRVRPEELTLNQFVQLAHLLKDR 294


>gi|161523771|ref|YP_001578783.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616]
 gi|189351468|ref|YP_001947096.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616]
 gi|226729764|sp|A9AFE4|RSMA_BURM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|160341200|gb|ABX14286.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616]
 gi|189335490|dbj|BAG44560.1| dimethyladenosine transferase [Burkholderia multivorans ATCC 17616]
          Length = 275

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 122/275 (44%), Gaps = 13/275 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIARLATPET 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     LK         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIARLKQRFGAL---LELHAGDALAFDFRSLAAPGDAPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L +I   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYAPHELPDVDPVLLGEIVTAAFSQRRKMLRNTLGDYRET 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
                 G +   RAE++S+ ++  +   L   ++ 
Sbjct: 240 IDFDALGFDLARRAEDVSVAEYVGVAQALAATRNA 274


>gi|145295068|ref|YP_001137889.1| dimethyladenosine transferase [Corynebacterium glutamicum R]
 gi|166221660|sp|A4QCP0|RSMA_CORGB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|140844988|dbj|BAF53987.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 293

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 18/285 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     + P K +GQNF+ D N +++I  ++       V+E+G G G+LT  L+  
Sbjct: 14  EIRALAEKLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLTLALVES 73

Query: 69  GARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            A  V  +E D +    L +          ++L I+  DALKV          P  ++AN
Sbjct: 74  AA-SVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKVQQSDM--EVQPTALVAN 130

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +      P    + ++ Q EV +R+ A   S  YG  SV   +    
Sbjct: 131 LPYNVSVPVLLHMLEE---FPTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYGPV 187

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSL 241
           T    I  +VF+P+PK+ S ++  +          E+ KK+      AF +RRKTLR +L
Sbjct: 188 TRAGSIGKNVFWPAPKIESGLVKIVREDTAWKQDDETRKKVWPIIDAAFLQRRKTLRAAL 247

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
               G     E  L  A I+  LR E L + D+ R+  +L    +
Sbjct: 248 SGHYGSGQAAEEALRAADIDPTLRGEKLDVTDYVRLAGVLQQKDE 292


>gi|189500122|ref|YP_001959592.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1]
 gi|226729769|sp|B3EQT0|RSMA_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189495563|gb|ACE04111.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1]
          Length = 262

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 89/263 (33%), Positives = 133/263 (50%), Gaps = 11/263 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H +I  KK +GQNFL D NI +KI ES+   +   V+EIG G G LT  +L +  R   
Sbjct: 7   KHTEIAVKKKLGQNFLTDQNICRKIVESAQLQENDHVLEIGPGFGALTTAILEVVPR-FT 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +EKD+    IL +        + +I+ D LK+D E+  +    +RI+ N+PY+I T +L
Sbjct: 66  AVEKDR----ILAEFIRNEYPSVRVIEMDFLKIDLEELASEGR-LRIMGNIPYSITTPIL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +          S TL+ Q EV  R+ A   S  YG L+V        T +F ++  V
Sbjct: 121 FKLLDNRRN---IFSETLMMQHEVARRLVASPGSKEYGILAVQLQTFCDVTYLFKVNRTV 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P+V S V+  IP            +   + +FG+RRKTL  +LK+    +++    
Sbjct: 178 FKPRPEVDSAVVSIIPKTAIFDADETGFRNFVRTSFGQRRKTLHNNLKKYYDLSMVTS-- 235

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           I+  LRAE+LS+E F  +   L 
Sbjct: 236 IDLKLRAESLSVEQFLTLFKELR 258


>gi|329894607|ref|ZP_08270413.1| Dimethyladenosine transferase [gamma proteobacterium IMCC3088]
 gi|328922961|gb|EGG30289.1| Dimethyladenosine transferase [gamma proteobacterium IMCC3088]
          Length = 266

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 132/264 (50%), Gaps = 10/264 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           YK   +K  GQNFL D +++  I  +        ++EIG G G LT  L+    R +  I
Sbjct: 8   YKHKARKRFGQNFLHDTHVITSIVSAIAPAQDDHIVEIGPGQGALTAELVPYCQR-LDAI 66

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+    +L    S H     +   DALK D+ +  +   P+R++ NLPYNI T L+  
Sbjct: 67  ELDRDLLTLLLASFSIHKG-FHLHNQDALKTDYREL-HQGRPLRVVGNLPYNISTPLILK 124

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                 +      +  + Q EV +R+TAQ +S  +GRL +   +  +   + D+ P  F 
Sbjct: 125 LFE---YTDIIADMHFMLQSEVVDRLTAQPHSKAWGRLGIAAQYLCRVERIIDVPPEAFD 181

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           P+PKV S V+   P  +     LE L +   + ++AF +RRKTLR +LK +  +  L   
Sbjct: 182 PAPKVQSAVVKLTPK-DSSKIDLEQLGRLQALVKQAFAQRRKTLRNNLKGVVSDAQLEHF 240

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           GI+   RAE +S+E +  +++ + 
Sbjct: 241 GIDPAARAETISLEQWVALSDGIE 264


>gi|254294291|ref|YP_003060314.1| dimethyladenosine transferase [Hirschia baltica ATCC 49814]
 gi|254042822|gb|ACT59617.1| dimethyladenosine transferase [Hirschia baltica ATCC 49814]
          Length = 274

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 104/266 (39%), Positives = 143/266 (53%), Gaps = 11/266 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
              K +GQ+FL D +IL + A S+G ++G TVIE+G GPG LT  LL  GA+KVI +E D
Sbjct: 10  RANKSLGQHFLFDPDILNRTALSAGPVEGRTVIEVGPGPGGLTAALLRNGAKKVIAVEMD 69

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWI 138
            +F   L+        RL +I+ D L +D+ K       P++IIANLPYN+GT +L NWI
Sbjct: 70  ARFAENLRSWKEYKEGRLSVIEGDGLSLDYPKLVEGEDKPVKIIANLPYNVGTPMLINWI 129

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            + +W      + L+FQ EV  R+ AQ    HYGRL+VL+       + F + P  F P 
Sbjct: 130 KSGSWRG---EMGLMFQHEVAARVCAQPGEKHYGRLAVLSQAVANTHIAFTLPPGAFKPP 186

Query: 199 PKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLH 251
           PKV S+V   +P         L +L+++T  AFG+RRK LR SLK L           L 
Sbjct: 187 PKVDSSVAVLMPLPEDKKYTHLSTLEQVTGAAFGQRRKMLRASLKSLAKTKNMDASEWLE 246

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              I+   RAE L   +F  +T    
Sbjct: 247 SCDIDPTRRAETLEQFEFRALTEAFR 272


>gi|325298753|ref|YP_004258670.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides
           salanitronis DSM 18170]
 gi|324318306|gb|ADY36197.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides
           salanitronis DSM 18170]
          Length = 263

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 137/261 (52%), Gaps = 8/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+  G R++ V+E 
Sbjct: 4   VKPKKFLGQHFLKDLQVAQDIADTVDTCPDLPILEVGPGMGVLTQFLIPKG-RQLKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++  +Q  +   II+ D LK+D    F    P  +  N PYNI +++ F  +
Sbjct: 63  DFESVAYLRENFAQLGDN--IIEKDFLKMDLSGLFG-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LS+L     K   +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAAPGSKTYGILSILIQAWYKVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K+I +  F +RRKTLR S+  +  ++    A    
Sbjct: 177 PKVKSAVIRMTRNDTTDLGCNEKLFKQIVKTTFNQRRKTLRNSISTILDKSHPLSADALF 236

Query: 258 NLRAENLSIEDFCRITNILTD 278
           + R E LS++DF  +TN + +
Sbjct: 237 DKRPEQLSVQDFISLTNRVEE 257


>gi|330818270|ref|YP_004361975.1| Dimethyladenosine transferase [Burkholderia gladioli BSR3]
 gi|327370663|gb|AEA62019.1| Dimethyladenosine transferase [Burkholderia gladioli BSR3]
          Length = 275

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 124/276 (44%), Gaps = 13/276 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+DL ++  I  +     G  ++EIG G G LT  ++   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDLGVIDSIVNAIRPERGERMVEIGPGLGALTGPVIERLATPEL 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     LK    +   RLE+   DAL  DF           +RII NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLKQRFGE---RLELHAGDALAFDFGSLALPGDKPSLRIIGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +    +         + Q EV ER+ A+  S  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLM---DFAERVVDQHFMLQNEVVERMVAEPGSKAFSRLSVMLQYRYVMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+         +  L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYAPHELAAVDVAVLGEVVTAAFSQRRKMLRNTLGAYRDA 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                 G +   RAE++ ++++  +   ++  +   
Sbjct: 240 IDFDALGFDLARRAEDVGVDEYVGLAQAVSAARPAG 275


>gi|110598757|ref|ZP_01387018.1| dimethyladenosine transferase [Chlorobium ferrooxidans DSM 13031]
 gi|110339621|gb|EAT58135.1| dimethyladenosine transferase [Chlorobium ferrooxidans DSM 13031]
          Length = 261

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 136/268 (50%), Gaps = 11/268 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K    H +I  KK +GQNFL D NI +KI  SSG+     ++EIG G G LT+ ++ + 
Sbjct: 2   IKVEYKHTEIAAKKKLGQNFLTDRNITRKIVASSGATADDNILEIGPGFGALTREIIAIC 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
                V+EKD +    ++   S++P  L++++ D L  D E       P+R++ N+PY+I
Sbjct: 62  P-TFTVVEKDPKLAAFIR---SEYPG-LKVLEADFLDTDLE-LLAGEKPLRVLGNIPYSI 115

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + +LF  +        + S TL+ Q EV  RI A+ ++  YG L+V        + +F 
Sbjct: 116 TSPILFKLLEHRR---SFISATLMMQHEVAMRIVARPSTKDYGILAVQMQAFCDVSYLFK 172

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +   VF P P V S VI   P         E  ++  + AF +RRKTL  +LK     + 
Sbjct: 173 VGRKVFRPQPGVDSAVISMKPKQESPVEESEGFRRFVRTAFHQRRKTLLNNLKESYNLDA 232

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           +  + +   LRAE L+IE+F  +   L 
Sbjct: 233 VESSTL--KLRAEALTIEEFFTLFGQLK 258


>gi|309787289|ref|ZP_07681901.1| dimethyladenosine transferase [Shigella dysenteriae 1617]
 gi|308924867|gb|EFP70362.1| dimethyladenosine transferase [Shigella dysenteriae 1617]
          Length = 249

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/250 (32%), Positives = 126/250 (50%), Gaps = 8/250 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  I  +     G  ++EIG G   LT+ +      ++ VIE D+     L+        
Sbjct: 2   IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQ-THPFLGP 59

Query: 96  RLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +L I Q DA+  +F +    +  P+ +  NLPYNI T L+F+  S   +      +  + 
Sbjct: 60  KLTIYQQDAMTFNFGELAEKMGQPLHVFGNLPYNISTPLMFHLFS---YTDAIADMHFML 116

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN- 213
           QKEV  R+ A  NS  YGRLSV+  +      + ++ P  F P PKV S V+  +PH   
Sbjct: 117 QKEVVNRLVAGPNSKVYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATM 176

Query: 214 PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272
           P P   +  L +IT EAF +RRKT+R SL  L    +L   GI+  +RAEN+S+  +C++
Sbjct: 177 PHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQM 236

Query: 273 TNILTDNQDI 282
            N L +N  +
Sbjct: 237 ANYLAENAPL 246


>gi|325478267|gb|EGC81386.1| dimethyladenosine transferase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 280

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 13/284 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        +K I   Y     K +GQNFL+D N + KI +++    G  VIEIG G G 
Sbjct: 1   MKKLYSPKIVKEITDLYSFRFSKSLGQNFLVDKNFVDKIVDAADVS-GENVIEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           +T  +  + A+KV+ IE D    PI+++   +  N  ++I +D LK D EK         
Sbjct: 60  ITYEMAKV-AKKVVAIEIDDSLIPIIEENMVEFDN-FDLIHEDILKADLEKIVAEEFAGE 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             ++++NLPY I T ++   ++++      + +T++ QKEV +R+ A +    Y  LSV 
Sbjct: 118 SFKVVSNLPYYITTPIIEKLVTSNLP---CKDMTIMVQKEVADRMLATEKDKEYSSLSVF 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             + + A  + ++   VF P PK+ STV+               L  +    F KRRKT+
Sbjct: 175 VKYYSDAKKVTNVPKSVFMPQPKIDSTVLKLELRKYTDDVDEAKLFSLIHAGFNKRRKTI 234

Query: 238 RQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277
             SL  +  ++       + GI+ NLRAENLS++DF  +  I+ 
Sbjct: 235 LNSLSDVVEKDKLRLAFEKLGIKNNLRAENLSLDDFINLAKIIE 278


>gi|268318145|ref|YP_003291864.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252]
 gi|262335679|gb|ACY49476.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252]
          Length = 266

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 128/261 (49%), Gaps = 14/261 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P+K +GQ+FL+D NI +KI  +  +     V+EIG G G LT +LL      +  IE 
Sbjct: 5   FRPRKRLGQHFLVDPNIARKIVAALQAAPEDPVVEIGPGTGALTGLLLERYPH-LTAIEI 63

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137
           D +    LK    +    L++ Q+D LKV++ +        + ++ NLPY I + +LF  
Sbjct: 64  DPRAVAELKARWPE----LDVRQEDVLKVNWAELAEEKGGRLHVVGNLPYYITSPILFAL 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           + A           L+ Q+EV ER+ A   S  YG LSV         ++F +S HVF P
Sbjct: 120 LDAREA---LAEAVLMMQREVAERLVAPPGSKTYGILSVAAQLWATPALLFPVSRHVFRP 176

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            P+V S V+             E L+++ + AF +RRKTLR SL+RL           + 
Sbjct: 177 KPRVESAVVRLTFERPLPDVDPELLRQVIRTAFNQRRKTLRNSLRRLLPSGTPLP---DP 233

Query: 258 --NLRAENLSIEDFCRITNIL 276
               RAE+LS +D+  +T  L
Sbjct: 234 WAQARAEDLSPDDYVALTRWL 254


>gi|332884271|gb|EGK04539.1| ribosomal RNA small subunit methyltransferase A [Dysgonomonas
           mossii DSM 22836]
          Length = 265

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/260 (33%), Positives = 135/260 (51%), Gaps = 9/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL+I ++IA++      + VIE+G G G LTQ L+    + + V+E 
Sbjct: 4   VKPKKFLGQHFLKDLDIARRIADTLDDFTDVPVIEVGPGMGVLTQFLIE-KEKGLTVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   P L D       R  I++ D L +D    +  S    +I N PYNI +++ F  +
Sbjct: 63  DRDSVPYLNDHYPALHGR--IVEGDFLTLDLSAIY--SDKFCVIGNYPYNISSQIFFKVL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                       + + QKEV ERI A+     YG LSVL         +F +S  VF P 
Sbjct: 119 EYKNK---VLCCSGMLQKEVAERIAAKPGGKTYGILSVLLQAWYDIEYLFTVSEKVFDPP 175

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S V+  + +    + C  +  K + +  F +RRKTLR S+K L G++    A    
Sbjct: 176 PKVKSAVVKLVRNKRGHLDCDEKLFKTVVKTGFNQRRKTLRNSMKPLLGKDCEAYADPIF 235

Query: 258 NLRAENLSIEDFCRITNILT 277
           + R E LS+ DF ++TNI++
Sbjct: 236 DERPERLSVADFEKLTNIVS 255


>gi|302865247|ref|YP_003833884.1| dimethyladenosine transferase [Micromonospora aurantiaca ATCC
           27029]
 gi|302568106|gb|ADL44308.1| dimethyladenosine transferase [Micromonospora aurantiaca ATCC
           27029]
          Length = 289

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 133/279 (47%), Gaps = 15/279 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT       ++ + +   + P K +GQNF+ D N +++I  ++G       +E+G G G+
Sbjct: 1   MTGLLGPAEIRELAARLGVTPTKKLGQNFVHDPNTVRRIVTTAGLTPDDVALEVGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNIS 116
           LT  LL + A  V  +E D      L + +++       RL +   DAL+V  +      
Sbjct: 61  LTLALLPVAAH-VHAVELDPALAAALPETAARFAGTAAERLTVHPADALRVTADDLAG-P 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           +P  ++ANLPYN+   ++ + ++     P      ++ QKEV +R+ A   S  YG  SV
Sbjct: 119 APTALVANLPYNVAVPVVLHLLAE---LPTLRHGLVMVQKEVADRLVAGPGSKVYGIPSV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRK 235
              W  ++     + P+VF+P P V S ++ F     P P    +++  +   AF +RRK
Sbjct: 176 KLAWYARSRAAGKVPPNVFWPVPNVDSGLVAFTRREPPRPDVPRKAVFAVVDAAFAQRRK 235

Query: 236 TLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDF 269
           TLR      +         L  AG++ + R E+L++E F
Sbjct: 236 TLRAALAGWAGGADRAAAALTAAGVDPSARGESLTVEQF 274


>gi|255007603|ref|ZP_05279729.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12]
 gi|313145296|ref|ZP_07807489.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12]
 gi|313134063|gb|EFR51423.1| dimethyladenosine transferase [Bacteroides fragilis 3_1_12]
          Length = 280

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/260 (33%), Positives = 136/260 (52%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPELPILEVGPGMGVLTQFLVK-KERLVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++ ++ F    P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFG-GHPFALTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL         +F +S HVF P 
Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYHVEYLFTVSEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K++ +  F +RRKTLR S+K + G++         
Sbjct: 177 PKVKSAVIRMTRNEVQDLGCDPKLFKQVVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+++F  +TN + 
Sbjct: 237 NKRPEQLSVQEFIELTNRVE 256


>gi|172061667|ref|YP_001809319.1| dimethyladenosine transferase [Burkholderia ambifaria MC40-6]
 gi|226729761|sp|B1YWD5|RSMA_BURA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|171994184|gb|ACB65103.1| dimethyladenosine transferase [Burkholderia ambifaria MC40-6]
          Length = 273

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 13/270 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     L+         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLQQRFGPL---LELHAGDALAFDFRSLAAPGDKPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFADAVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMEKMLD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEVVTAAFSQRRKMLRNTLGDYRET 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 G +   RAE++S+ ++  +   L 
Sbjct: 240 IDFDGLGFDLARRAEDVSVAEYVGVAQALA 269


>gi|300770912|ref|ZP_07080789.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300762185|gb|EFK59004.1| dimethyladenosine transferase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 259

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 132/261 (50%), Gaps = 10/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  KK++GQ+FL D N  +KI ++     G   V+E+G G G L+  LL     +  +I+
Sbjct: 4   VRAKKHLGQHFLNDKNAAQKIVDALDPKLGFSQVLEVGPGMGVLSDFLLQKPEYQTYLID 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    L D   +  +RL  I  D L +DF K+F     + +I N PYNI +++LF  
Sbjct: 64  VDDESIEFLADKYPELGDRL--IHGDFLALDFSKYF--GPKMAVIGNFPYNISSQILFKI 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +           +T +FQKEV ER TA+  S  YG LSV          +F +    F P
Sbjct: 120 LDERQ---RVVQMTGMFQKEVAERCTAKAGSKEYGILSVFLQAYYHVEYLFTVKAGAFTP 176

Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    +    + C  +   ++ +  F +RRKTLR SL  +  ++ +    + 
Sbjct: 177 PPKVLSGVIRMTRNEREELDCDEKLFWRVVKAGFNQRRKTLRNSLSGVVPKDKMSDNPLY 236

Query: 257 TNLRAENLSIEDFCRITNILT 277
             LRAE LS+EDF ++TN ++
Sbjct: 237 E-LRAERLSVEDFVQLTNEIS 256


>gi|323143362|ref|ZP_08078050.1| dimethyladenosine transferase [Succinatimonas hippei YIT 12066]
 gi|322416880|gb|EFY07526.1| dimethyladenosine transferase [Succinatimonas hippei YIT 12066]
          Length = 269

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  +K  GQNFL+D  I+  I ++    +G  ++EIG G   LT+ +L   A+ +  IE 
Sbjct: 8   LKARKRFGQNFLVDDFIIGAIVDAINPKEGDYLVEIGPGHAALTRPVLER-AKALTAIEL 66

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+    IL+  S      L +I+ DALKV+FE        +R+  NLPYNI + ++F+ +
Sbjct: 67  DRDLAAILR--SDPFLKGLTLIEADALKVNFEALPGSGD-LRVFGNLPYNITSPIIFHLL 123

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S        + +  + QKEV +R+ A  +   YGRL+V+  +  +   + D+ P  F P 
Sbjct: 124 SQR----GIKDMHFMLQKEVVDRLCAGPHCRDYGRLTVMVQYHAEVIPVLDVPPEAFRPR 179

Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P    +        L  +   AF  RRKTLR SL  L     +    I+
Sbjct: 180 PKVNSAVVRLKPKNLTDDERALAPFLNTVALNAFNTRRKTLRNSLSTLFCTEEMQDLNID 239

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
           T LRAE+L++  F  +   L D +
Sbjct: 240 TTLRAEDLNLASFVVLAKALRDKK 263


>gi|240169906|ref|ZP_04748565.1| dimethyladenosine transferase [Mycobacterium kansasii ATCC 12478]
          Length = 317

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 132/279 (47%), Gaps = 19/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +    +  P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL
Sbjct: 19  RTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVAASGITRADQVLEVGPGLGSLTLALL 78

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L    ++H +    RL ++  D L +  +   +   P  ++
Sbjct: 79  DRGA-TVTAVEIDPVLAARLPQTVAEHSHSEIQRLTVLNRDILSLRPQDLAD--EPTAVV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + ++     P    +T++ Q EV ER+ A+     YG  SV   +  
Sbjct: 136 ANLPYNVAVPALLHLLAE---FPSIRVVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFHG 192

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC---LESLKKITQEAFGKRRKTLR 238
           +      +SP VF+P P+V S ++    +   P P      + + ++   AF +RRKT R
Sbjct: 193 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDGAFRQQVFELVDIAFAQRRKTSR 252

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
            +  +  G      N L  A I+   R E LSI DF R+
Sbjct: 253 NAFAQWAGSGNESANRLLAASIDPARRGETLSIADFVRL 291


>gi|194227549|ref|XP_001493452.2| PREDICTED: similar to transcription factor B1, mitochondrial [Equus
           caballus]
          Length = 348

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 140/299 (46%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFRLHAVKQLSQNFLLDLRLTDKIVRKAGTLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  G  +++V+EKD +F P L+ +S   P +L I+  D L    E+ F         +  
Sbjct: 74  LNAGVAELLVVEKDSRFLPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRHWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+         +      +TL FQKEV ER+TA   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENVSRRDGPFAYGRTQMTLTFQKEVAERLTATTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++  +      +  I    F P P+V   V+ F P   P I    + ++K+ Q  F
Sbjct: 194 SRLSIMAQYLCSVQHVLTIPGRAFVPKPEVDVGVVRFTPLTQPRIEQPFQLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L  E         LL  A ++  LR   LS+  F  + ++     D
Sbjct: 254 QFRRKYCHRGLGMLFPEAQRLESTGKLLQLADVDPTLRPSQLSVSHFKSLCDVYRKMCD 312


>gi|295099321|emb|CBK88410.1| dimethyladenosine transferase [Eubacterium cylindroides T2-87]
          Length = 289

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 149/289 (51%), Gaps = 18/289 (6%)

Query: 3   MNNKSHSLK---TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M+    ++K    I   Y +  KK  GQNF+++  +++KIA+++       V EIG G G
Sbjct: 1   MDRPIATIKRTKEIQEKYNVFTKKSYGQNFIIEPRVVEKIADAAIKSKDELVFEIGPGIG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNI 115
            LTQ L T+ + +VI  E D +   +L++      + L+I+  D LKVD      K+   
Sbjct: 61  ALTQYL-TMKSNQVIAFEIDDRLPEVLENEIG--YDHLKIVLKDILKVDINEEIKKYRKP 117

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
              I   +NLPY I T +LF    A       E +T++ QKEV +R  A +N   Y  LS
Sbjct: 118 DQKIVFASNLPYYITTPILFKLFEATEP---IERITVMMQKEVADRFLASQNDKEYNALS 174

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235
           V+T +R     + D+S HVF+PSP V S V+ F  H        E   K+ +  F +RRK
Sbjct: 175 VITQYRCDIKKVMDVSRHVFWPSPNVDSAVLQFTFHHKYNLKDEELFFKMVKACFVQRRK 234

Query: 236 TLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           T+  + + L  +      LL +A +++++RA+  ++EDF R+  +  ++
Sbjct: 235 TIYNNFQTLFKDKEEALQLLEKAQLKSSIRAQQCTLEDFIRLYEVSYES 283


>gi|88801801|ref|ZP_01117329.1| dimethyladenosine transferase [Polaribacter irgensii 23-P]
 gi|88782459|gb|EAR13636.1| dimethyladenosine transferase [Polaribacter irgensii 23-P]
          Length = 267

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 134/269 (49%), Gaps = 14/269 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D +I K IA++        V+EIG G G LT+ LL   A K+ V+E 
Sbjct: 3   VKAKKHLGQHFLTDESIAKNIADALSGNGYDDVLEIGPGMGILTKYLLPQKA-KITVMEL 61

Query: 79  DQQFFPILKDISS-------QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D++    L D                 +++ D LK + +  F+    + II N PYNI T
Sbjct: 62  DRESVAYLHDTFPLEHLTLDTSAAHFSVLEGDFLKKNIQDIFH-KKQVAIIGNFPYNIST 120

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +++F  I    + P +  +   FQKEV +RI  ++ S  YG +SVLT        +F + 
Sbjct: 121 QIVFKAIENREFVPEFAGM---FQKEVAKRIAEKEGSKVYGIMSVLTQAFFDVEYLFTVP 177

Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           P VF P PKV S VI  +   +  +P   +   ++ + AF +RRK LR SLK L   + L
Sbjct: 178 PDVFNPPPKVDSGVIRLVRKKDYSLPVDEKLFFRVVKTAFNQRRKMLRSSLKSLNLSDSL 237

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
            +  I    R E LS+  F  +T  +  +
Sbjct: 238 KEDPI-FTKRPEQLSVAAFIALTQKIAKD 265


>gi|62258206|gb|AAX77774.1| unknown protein [synthetic construct]
          Length = 297

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/266 (35%), Positives = 134/266 (50%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL   +  V V
Sbjct: 28  QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLL-SSSNNVSV 86

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134
           +E D      L     ++     I   D LK D     N S   I++I NLPYNI + +L
Sbjct: 87  VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 145

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS   GRLSV+  +    +M+  I P V
Sbjct: 146 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 202

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           F+P PKV S ++   P     +       ++I +++F +RRKTL  +LK +  E  +   
Sbjct: 203 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 262

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 263 TLPVDTNLRAENLSVGDFVSLANFLS 288


>gi|73946166|ref|XP_533459.2| PREDICTED: similar to transcription factor B1, mitochondrial [Canis
           familiaris]
          Length = 345

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/299 (29%), Positives = 141/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFRLHAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    E+ F         +  
Sbjct: 74  LNANVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPEILKRPWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   +            +TL FQKEV ER+TA   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++  +      +  I    F P P+V   V+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSIMAQYLCNVQHILTIPGQAFVPKPEVDVGVVHFTPLVRPRIEQPFKLVEKVVQNTF 253

Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L  +         LL  A ++  LR   LS+  F  + ++     D
Sbjct: 254 QFRRKYCYRGLGMLFPQIHRVESTGKLLELADVDPTLRPSQLSVSHFKSLCDVYRKMCD 312


>gi|4929619|gb|AAD34070.1|AF151833_1 CGI-75 protein [Homo sapiens]
          Length = 346

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+   ++     + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLLRLQAANELSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   +            +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L+ L  E         LL  A I+  LR   LSI  F  + ++     D
Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCD 312


>gi|311740851|ref|ZP_07714678.1| dimethyladenosine transferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304371|gb|EFQ80447.1| dimethyladenosine transferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 300

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 135/278 (48%), Gaps = 20/278 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     I+P K +GQNFL D N +++I  ++       V+E+G G G+LT  L+  
Sbjct: 28  EIRALAEKLDIVPTKKLGQNFLHDPNTIRRIVAAAELEPTDRVLEVGPGMGSLTLGLVE- 86

Query: 69  GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
               V  +E D +    L     + + ++  RL +++ DAL+V      +++ P  ++AN
Sbjct: 87  AVGDVTAVEIDSRLAAQLPDTVAERAPEYAQRLRVVEKDALRVTDS---DVTEPTALVAN 143

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +      P    + ++ Q EV +R+ AQ  S  YG  SV  G+  K 
Sbjct: 144 LPYNVAVPVLLHLLET---FPSIRRVLVMVQLEVADRLAAQPGSKVYGVPSVKAGFYGKV 200

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE---SLKKITQEAFGKRRKTLRQS 240
           +    I  +VF+P+P + S ++      + P P   E    +  +   AF +RRKTLR +
Sbjct: 201 SKAGTIGKNVFWPAPNIESGLVRIDVFEDAPWPITDESRAKVWPVIDAAFAQRRKTLRAA 260

Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           L    G        L  A I+   R E L++EDF R+ 
Sbjct: 261 LSGHFGSGAAAEEALRAADIDPKQRGEKLAVEDFVRLA 298


>gi|298505979|gb|ADI84702.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
           [Geobacter sulfurreducens KN400]
          Length = 276

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/270 (34%), Positives = 137/270 (50%), Gaps = 16/270 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I  +K +GQNFL D ++L +IA    +  G  ++EIG G G LT  L  L A +++ +E
Sbjct: 5   GIRARKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEL-AGQLVAVE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135
            D +  P+L+   S +P+ + II+ D L +D  +      + P ++ ANLPYNI T +LF
Sbjct: 64  LDNRLVPLLRGSFSGNPS-VTIIEGDILDLDLRETLGRYGTPPWKVAANLPYNISTPVLF 122

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             + A      +  L L+ QKEVG R+ A   S  YG LSVL       T    + P  F
Sbjct: 123 RLLDARD---LFSRLVLMLQKEVGNRLAAGPGSKEYGVLSVLFQLHFDVTREILVRPGSF 179

Query: 196 FPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLK-------RLGG 246
            P PKV S V+ F+P   P       +  +++ + +F  RRKTL   LK         G 
Sbjct: 180 HPVPKVDSVVLLFVPLAQPRVDVGDEDYFRRVVKASFAMRRKTLWNCLKGGALGVPTDGI 239

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            ++L + GI+   R E LS+ +F  +T  L
Sbjct: 240 RDVLARCGIDEGRRGETLSLHEFASLTKEL 269


>gi|297243121|ref|ZP_06927059.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis AMD]
 gi|296889332|gb|EFH28066.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis AMD]
          Length = 298

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 129/282 (45%), Gaps = 12/282 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   ++KI  ++G   G  V+E+G G G+LT  +L
Sbjct: 20  AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAGVKSGDIVMEVGPGLGSLTLAIL 79

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNI--SSPIR 120
             GA ++  +E D      L     +       +  +I  DAL V+ +    I  +    
Sbjct: 80  QTGA-QLTAVEIDPPLARRLPHTVEEFMPKAMQKFNVILKDALTVNADDVPQIAQAKKFT 138

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T ++   +   +    +  +    QKEV +R+ AQ  +  YG  SV   W
Sbjct: 139 LVANLPYNVATPIILTLLEKFSNLQNFLVMV---QKEVADRLCAQPGNKVYGTPSVKLAW 195

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238
             KA     I  +VF+P+P V S ++ F           E   +      AF +RRKTL 
Sbjct: 196 YGKAQRAGLIGRNVFWPAPNVDSALVSFTRDCTSKGDNNEREGVFAFIDAAFQQRRKTLH 255

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +LK    E     +GI+   R E L+ ++F  +     D Q
Sbjct: 256 AALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKDCQ 297


>gi|260577799|ref|ZP_05845733.1| dimethyladenosine transferase [Corynebacterium jeikeium ATCC 43734]
 gi|258604026|gb|EEW17269.1| dimethyladenosine transferase [Corynebacterium jeikeium ATCC 43734]
          Length = 311

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 132/296 (44%), Gaps = 33/296 (11%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
            + ++ +     + P K +GQNF+ D N ++KI +++       V+EIG G G+LT  LL
Sbjct: 12  PNEIRQLAEELDLNPTKKLGQNFVHDPNTVRKIVKAADVTADDNVVEIGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPI--RI 121
             GA  V  +E D +    L     +         +I  DA+ V  + F +   P+   +
Sbjct: 72  ETGA-SVTAVEIDPRLAEKLPATLEEQGAGEADAAVILKDAMAVTAQDFADAGRPLPTAL 130

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   +L + +      P  + + ++ Q EV +R+ A   S  YG  SV  G+ 
Sbjct: 131 VANLPYNVSVPVLLHMLEE---FPSIDRVLVMVQLEVADRLAAGPGSKIYGVPSVKAGFY 187

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-------------------PIPCCLESL 222
              T    I  +VF+P+PK+ S ++    +                      +      +
Sbjct: 188 GSVTRAATIGKNVFWPAPKIDSGLVRIDRYAEGAEPWAGGQLGADLGTEQLDVEQLRREV 247

Query: 223 KKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
             +   AF +RRKTLR +L    G     E  L +AGI+  LR E LS E F ++ 
Sbjct: 248 FALADAAFLQRRKTLRAALSGHFGGGQAAEEALRRAGIDPTLRGEKLSTEQFVQLA 303


>gi|301783565|ref|XP_002927199.1| PREDICTED: mitochondrial dimethyladenosine transferase 1-like
           [Ailuropoda melanoleuca]
          Length = 351

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 142/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L+I+  D L    E+ F         +  
Sbjct: 74  LNANVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+N+ T L+  W+   +            +TL FQKEV ER+TA   S   
Sbjct: 134 PNVHIIGNLPFNVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +  I    F P P+V   V+ F P + P I    + ++K+ + AF
Sbjct: 194 SRLSVMAQYLCDVQHILTIPGQAFVPKPEVDVGVVRFTPLVRPRIEQPFKLVEKVVENAF 253

Query: 231 GKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L          E LL  A ++  L+   LS+  F  + ++     D
Sbjct: 254 QFRRKYCYRGLGMLFPEIQRVESTEKLLELADVDPTLQPSQLSVSHFKSLCHVYQKMCD 312


>gi|262047261|ref|ZP_06020219.1| dimethyladenosine transferase [Lactobacillus crispatus MV-3A-US]
 gi|260572506|gb|EEX29068.1| dimethyladenosine transferase [Lactobacillus crispatus MV-3A-US]
          Length = 294

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/295 (33%), Positives = 146/295 (49%), Gaps = 23/295 (7%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT N         + I++ Y +  KK +GQNFL+D   +  I E++G      VIEIG G
Sbjct: 1   MTNNIPIGSPVRTQAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDAL----KV 107
            G+LT+ LL  GA KV   E D     IL++            +R ++I  D L    KV
Sbjct: 61  IGSLTEQLLLAGA-KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDLLKADFKV 119

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   FF+ + PI+++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ AQ  
Sbjct: 120 DISDFFDFTKPIKVVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPG 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKIT 226
           S  YG L++         +   +S + F P PKV S+V+   P    P     +    + 
Sbjct: 177 SKEYGPLTISVQTEMNVKLALQVSHNSFMPRPKVDSSVVVLTPLKEKPAIENRKHFIWVV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +  F +RRKTL  +LK L       + L  + G+   +R E L+I+ F +I + +
Sbjct: 237 KMCFSQRRKTLNNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291


>gi|224025715|ref|ZP_03644081.1| hypothetical protein BACCOPRO_02456 [Bacteroides coprophilus DSM
           18228]
 gi|224018951|gb|EEF76949.1| hypothetical protein BACCOPRO_02456 [Bacteroides coprophilus DSM
           18228]
          Length = 265

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 132/260 (50%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA +  +   + ++E+G G G LTQ L+T   R + V+E 
Sbjct: 4   VKPKKFLGQHFLKDLQVAQDIANTVDACPELPILEVGPGMGVLTQFLMT-KERPLKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      N   II+ D LK+D  + F    P  +  N PYNI +++ F  +
Sbjct: 63  DFESVAYLRENFPALGNN--IIEQDFLKMDLAQLFE-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ER+ A   S  YG LSVL     +   +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERMAAGPGSKTYGILSVLIQAWYRVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K+I +  F +RRKTLR S+  +  +     A    
Sbjct: 177 PKVKSAVIRMTRNETQELGCNEKLFKQIVKTTFNQRRKTLRNSISPILDKTNPLMADPIF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+++F  +TN + 
Sbjct: 237 NKRPEQLSVQEFIDLTNRVE 256


>gi|300172804|ref|YP_003771969.1| dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887182|emb|CBL91150.1| Dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811]
          Length = 295

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 151/292 (51%), Gaps = 20/292 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + N + + + IL+ Y +  KK  GQNFL DL++L  I +++   +   VIEIG G G+LT
Sbjct: 7   IANPTRT-QAILNAYGLHAKKKFGQNFLTDLDVLHGIVDTADITNEDYVIEIGPGIGSLT 65

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSP 118
           + +    A+KV+  E D Q   +L +    + N +++I  D L+++  +     F  ++ 
Sbjct: 66  EQIA-RAAKKVLAFEIDTQMVKVLGETLKDYDN-VKVISGDILEMNLPQIITEEFGETAH 123

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           ++++ANLPY I T +L   +  +     W+++ ++ Q+EV +R+ A+  +  YG L++  
Sbjct: 124 VKVVANLPYYITTPILMQLLRTNI---TWDNIVVMMQREVADRLNAEVGTKAYGVLTLTV 180

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTL 237
            +   A +  ++    F P+PKV S V+   P +  +     E L  + + +F  RRK+L
Sbjct: 181 QYFANAQLAIEVPATAFNPAPKVESAVVKLTPLVPQVIVDQPERLFGVIKGSFSHRRKSL 240

Query: 238 RQSLKRLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             ++ +  G++          L QA I+ ++RAE L +     +   L + +
Sbjct: 241 WNNMLQTYGKDTYIKEKITAALKQATIDPSIRAERLDLTQLTTLYLALREQE 292


>gi|304315637|ref|YP_003850782.1| dimethyladenosine transferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777139|gb|ADL67698.1| dimethyladenosine transferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 272

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/273 (34%), Positives = 142/273 (52%), Gaps = 16/273 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               KK +GQNF+ D  IL KIA+ +       VIEIGAG G LT+ ++   A+ V+  E
Sbjct: 5   GFNTKKKLGQNFIFDEGILSKIADLADITKDDNVIEIGAGLGTLTREIVER-AKNVVAYE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTRLL 134
            D +   IL+D   ++ N L I+ DD +K D +   +        +++ANLPY I + ++
Sbjct: 64  IDDEAVGILRDKLREYKN-LIILNDDIMKADLKGVVDKYFDGDKCKVVANLPYYITSPII 122

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
              + +       + +T+L QKEV ERI A+  S  YG L+V   + +K  M+ ++ P V
Sbjct: 123 MKLLESH----LMKDITILIQKEVAERICAEPGSKEYGVLTVAVNYYSKPEMLLELPPEV 178

Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----- 247
           F P PKV+ST+I       P       +   K+ + +FG+RRK +  SLK L  +     
Sbjct: 179 FSPKPKVSSTLIKLHVLDEPPVFVKNEKLFFKVVKASFGQRRKVITNSLKSLNIDQSLIL 238

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           N L + GI+   R E LSIE F  + N + D +
Sbjct: 239 NALLKCGIDLKQRGETLSIEKFAELANAIDDMK 271


>gi|15618967|ref|NP_225253.1| dimethyladenosine transferase [Chlamydophila pneumoniae CWL029]
 gi|15836590|ref|NP_301114.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138]
 gi|16753057|ref|NP_445330.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39]
 gi|27151618|sp|Q9Z6K0|RSMA_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|4377394|gb|AAD19196.1| Dimethyladenosine Transferase [Chlamydophila pneumoniae CWL029]
 gi|7189706|gb|AAF38590.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39]
 gi|8979432|dbj|BAA99266.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138]
          Length = 277

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 100/279 (35%), Positives = 143/279 (51%), Gaps = 14/279 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT ++ +  L   LS  +  PKK + QNFL+D NI+KKI  +S  +    V+EIG G G 
Sbjct: 1   MTRSSPA-QLSRFLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L+  GA +VI IEKD  F P L+++    P RLEII      +D  + +      R
Sbjct: 60  LTEELIAAGA-QVIAIEKDPMFAPSLEEL----PIRLEIIDACKYPLDQLQEYKTLGKGR 114

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY+I T LL         P FW+++T++ Q EV  RI AQ     YG L++   +
Sbjct: 115 VVANLPYHITTPLLTKLFLEA--PDFWKTVTVMVQDEVARRIVAQPGGRDYGSLTIFLQF 172

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLR 238
                  F +S   F+P P+V S VIH            E      +T+ AF +RRK L 
Sbjct: 173 FADIHYAFKVSASCFYPKPQVQSAVIHMKVKETLPLSDEEIPVFFTLTRTAFQQRRKVLA 232

Query: 239 QSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRIT 273
            +LK L      E  L + G+  N+R E LS+ D+  + 
Sbjct: 233 NTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDYLALF 271


>gi|325954121|ref|YP_004237781.1| ribosomal RNA small subunit methyltransferase A [Weeksella virosa
           DSM 16922]
 gi|323436739|gb|ADX67203.1| Ribosomal RNA small subunit methyltransferase A [Weeksella virosa
           DSM 16922]
          Length = 254

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/261 (35%), Positives = 143/261 (54%), Gaps = 9/261 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK++GQ+FL D  + +KIAE     +   V+EIG G G LT+ +L    +K+ V+E
Sbjct: 2   KVRAKKHLGQHFLNDEQVAQKIAEGLTWDNYQQVLEIGPGMGVLTKYILQAN-KKISVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    L++        L I ++D LK+DF +F +    + ++ N PYNI ++++F  
Sbjct: 61  IDTESVAYLEENYVPFYPDLIIYEEDFLKMDFSRFTDD---LAVLGNFPYNISSQIIFKI 117

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P    +  +FQKEV ERI A K S  YG LSVL     +   +F +S +VF P
Sbjct: 118 LEEKNKVP---EVVGMFQKEVAERIAAPKGSRVYGILSVLAQAFYQVDYLFTVSENVFTP 174

Query: 198 SPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    + + +P    +    + + AF +RRKTLR +LK LG  + + +  + 
Sbjct: 175 PPKVKSGVIRMKRYRSTLPEVDEKLFFTVVKTAFNQRRKTLRNALKSLGIPDTMKENEL- 233

Query: 257 TNLRAENLSIEDFCRITNILT 277
            NLRAE LS+EDF  +T  + 
Sbjct: 234 LNLRAEQLSVEDFLELTKRMK 254


>gi|256545786|ref|ZP_05473142.1| dimethyladenosine transferase [Anaerococcus vaginalis ATCC 51170]
 gi|256398482|gb|EEU12103.1| dimethyladenosine transferase [Anaerococcus vaginalis ATCC 51170]
          Length = 282

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 139/284 (48%), Gaps = 13/284 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       ++KTI   Y     K +GQNFL+D N + KI + S    G  ++EIG G G 
Sbjct: 1   MKKLYSPKTIKTIQDLYGFKFSKSLGQNFLVDKNFVDKIIDLSEV-KGENILEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           ++Q +     +K++VIE D+   PIL D   +  N +EII  D LK D +K         
Sbjct: 60  ISQEMAKTC-KKLVVIEIDKTLIPILNDNLGEFSN-VEIINADILKTDLKKIAKEKFDGE 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             ++++NLPY I T ++      D      + +T++ QKEV +R+ A + S  Y  LSV 
Sbjct: 118 DFKVVSNLPYYITTPIIEKLFEEDL---SCKDMTIMVQKEVADRMKADEKSKDYSSLSVF 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             +  +    F +   VF P PK+ S V+     L        +L  + +  F KRRKT+
Sbjct: 175 IKYYAEIIGQFKVPKSVFMPQPKIDSQVLKLNLRLYDENVNTNTLFNVVRAGFNKRRKTI 234

Query: 238 RQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
             SL  +      + +L    ++ NLRAENLS++DF +I N   
Sbjct: 235 LNSLSSVIEKENLKEILENLSLKENLRAENLSLDDFIKIANEFE 278


>gi|110638030|ref|YP_678238.1| dimethyladenosine transferase [Cytophaga hutchinsonii ATCC 33406]
 gi|118600861|sp|Q11UL8|RSMA_CYTH3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|110280711|gb|ABG58897.1| dimethyladenosine transferase [Cytophaga hutchinsonii ATCC 33406]
          Length = 258

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/262 (33%), Positives = 130/262 (49%), Gaps = 10/262 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVI 76
           K+  KK++GQ+FL D  I + I +          V+EIG G G LTQ LL   +    V+
Sbjct: 3   KVKAKKHLGQHFLNDQQIAQDIVDGLTLHGSYKEVLEIGPGMGVLTQYLLKNNSYHTKVV 62

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           + D +    LK +  Q  +  ++I  D LK D   ++       II N PYNI T +LF 
Sbjct: 63  DIDGESIEYLKKVFPQLKD--DVIHGDFLKADLADWY--PDKFAIIGNFPYNISTEILFK 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    +  +FQKEV ER  A+  +  YG  SVL         +F +  HVF 
Sbjct: 119 VLDYREQIP---EVVGMFQKEVAERFAAKNGNKTYGITSVLLQAFYDIEYLFTVPEHVFT 175

Query: 197 PSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S VI     +   +PC  +   K+ +  F  RRKTLR +LK +  +N+     I
Sbjct: 176 PPPKVKSGVIRLKRNNRTHLPCDEKEFFKVVKAGFNMRRKTLRNALKSINVQNISMDLPI 235

Query: 256 ETNLRAENLSIEDFCRITNILT 277
             + RAE LS+++F  +TN+L+
Sbjct: 236 -FDKRAEQLSVQEFFDLTNMLS 256


>gi|270284640|ref|ZP_05966446.2| dimethyladenosine transferase [Bifidobacterium gallicum DSM 20093]
 gi|270276584|gb|EFA22438.1| dimethyladenosine transferase [Bifidobacterium gallicum DSM 20093]
          Length = 319

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 125/278 (44%), Gaps = 19/278 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I P K  GQNF++D   +++I   +G   G  V+E+G G G+LT  LL   A  V  +E
Sbjct: 46  GISPTKKFGQNFVIDPGTVRRIVREAGVGAGDRVLEVGPGLGSLTLALLETRAH-VTAVE 104

Query: 78  KDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGT 131
            D      L     +      +R  +I +DALKV   +   F    P  ++ANLPYN+ T
Sbjct: 105 IDPPVAERLPRTIGEFMPDALDRFRVINEDALKVSAAQLPEFADGEPFTLVANLPYNVAT 164

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   +      P      ++ QKEV +R+ A   S  YG  SV   W   A     + 
Sbjct: 165 PIVLTLLER---FPNLTKFLVMVQKEVADRLCADPGSKIYGTPSVKLAWYGTAERAGLVG 221

Query: 192 PHVFFPSPKVTSTVIHFIPHL---------NPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            +VF+P+P V S ++ F                      + ++   AFG+RRKTL  +LK
Sbjct: 222 RNVFWPAPNVDSALVLFERAEGGDVTANGAYGTDVDRAFVFELIDAAFGQRRKTLHAALK 281

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           +        +A I+   R E L+I +F R+   + D Q
Sbjct: 282 KQVPAAAFERAQIDATRRGETLTIGEFIRLAQAVRDVQ 319


>gi|293381472|ref|ZP_06627467.1| dimethyladenosine transferase [Lactobacillus crispatus 214-1]
 gi|290921942|gb|EFD98949.1| dimethyladenosine transferase [Lactobacillus crispatus 214-1]
          Length = 294

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/295 (32%), Positives = 145/295 (49%), Gaps = 23/295 (7%)

Query: 1   MTMN---NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT N         + I++ Y +  KK +GQNFL+D   +  I E++       VIEIG G
Sbjct: 1   MTNNIPIGSPVRTQAIVNRYFVKAKKNLGQNFLVDQTAILGIVEAARIKKDDQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDAL----KV 107
            G+LT+ LL  GA KV   E D     IL++            +R ++I  D L    KV
Sbjct: 61  IGSLTEQLLLAGA-KVFAYEVDDSLPTILQNELPKKIDDQPLASRFKLILKDVLKADFKV 119

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   FF+ + PI+++ANLPY I T ++F    +D     + SLTL+ QKEV ER+ AQ  
Sbjct: 120 DISDFFDFTKPIKVVANLPYYITTPIIFALAESDLH---FTSLTLMMQKEVAERLEAQPG 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKIT 226
           S  YG L++         +   +S + F P PKV S+V+   P    P     +    + 
Sbjct: 177 SKEYGPLTISVQTEMNVKLALQVSHNSFMPRPKVDSSVVVLTPLKEKPAIENRKHFIWVV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +  F +RRKTL  +LK L       + L  + G+   +R E L+I+ F +I + +
Sbjct: 237 KMCFSQRRKTLNNNLKALLPDKTKRDELFAELGVNPRIRPEELTIKQFIKIASFI 291


>gi|118466314|ref|YP_880398.1| dimethyladenosine transferase [Mycobacterium avium 104]
 gi|166221679|sp|A0QBW0|RSMA_MYCA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118167601|gb|ABK68498.1| dimethyladenosine transferase [Mycobacterium avium 104]
          Length = 318

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 133/286 (46%), Gaps = 19/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +    +  P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL
Sbjct: 19  RTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGSLTLALL 78

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L    ++H +    RL ++  D L +  ++      P  ++
Sbjct: 79  DRGAH-VTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDELAE--PPTAVV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + ++     P   ++T++ Q EV ER+ A+     YG  SV   +  
Sbjct: 136 ANLPYNVAVPALLHLLAE---FPSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFG 192

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLR 238
           +      +SP VF+P P+V S ++    +        P     + ++   AFG+RRKT R
Sbjct: 193 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPTDPAFRRQVFQLVDIAFGQRRKTCR 252

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            +     G      + L  A I+   R E LSI+DF R+     D 
Sbjct: 253 NAFVDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298


>gi|212278069|gb|ACJ23049.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  G NFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGPNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE+++ E +  ++N L D 
Sbjct: 235 PQDRAEHIAPEKYVALSNYLADK 257


>gi|56707611|ref|YP_169507.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670082|ref|YP_666639.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456681|ref|ZP_03665154.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370128|ref|ZP_04986134.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874431|ref|ZP_05247141.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|62900471|sp|Q5NHI5|RSMA_FRATT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118600868|sp|Q14IY7|RSMA_FRAT1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56604103|emb|CAG45102.1| dimethyladenosine transferase , kasugamycin resistance [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320415|emb|CAL08485.1| dimethyladenosine transferase , kasugamycin resistance [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568372|gb|EDN34026.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840430|gb|EET18866.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158768|gb|ADA78159.1| dimethyladenosine transferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 262

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/266 (35%), Positives = 134/266 (50%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            YK   KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL   +  V V
Sbjct: 2   QYKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLL-SSSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134
           +E D      L     ++     I   D LK D     N S   I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS   GRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           F+P PKV S ++   P     +       ++I +++F +RRKTL  +LK +  E  +   
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L+
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLS 262


>gi|19552136|ref|NP_600138.1| dimethyladenosine transferase [Corynebacterium glutamicum ATCC
           13032]
 gi|62389800|ref|YP_225202.1| dimethyladenosine transferase [Corynebacterium glutamicum ATCC
           13032]
 gi|27151568|sp|Q8NRY1|RSMA_CORGL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21323676|dbj|BAB98303.1| Dimethyladenosine transferase (rRNA methylation) [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325135|emb|CAF19616.1| PUTATIVE DIMETHYLADENOSINE TRANSFERASE [Corynebacterium glutamicum
           ATCC 13032]
          Length = 293

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 18/285 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     + P K +GQNF+ D N +++I  ++       V+E+G G G+LT  L+  
Sbjct: 14  EIRALAEKLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLTLALVES 73

Query: 69  GARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            A  V  +E D +    L +          ++L I+  DALKV          P  ++AN
Sbjct: 74  AA-SVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKVQQSDMAV--QPTALVAN 130

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +      P    + ++ Q EV +R+ A   S  YG  SV   +    
Sbjct: 131 LPYNVSVPVLLHMMEE---FPTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYGPV 187

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI---TQEAFGKRRKTLRQSL 241
           T    I  +VF+P+PK+ S ++  +          E+ KK+      AF +RRKTLR +L
Sbjct: 188 TRAGSIGKNVFWPAPKIESGLVKIVREDTAWKQDDETRKKVWPIIDAAFLQRRKTLRAAL 247

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
               G     E  L  A I+  LR E L + D+ R+  +L    +
Sbjct: 248 SGHYGSGQAAEEALRAADIDPTLRGEKLDVTDYVRLAGVLQQKDE 292


>gi|296111672|ref|YP_003622054.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154]
 gi|295833204|gb|ADG41085.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154]
          Length = 295

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 141/284 (49%), Gaps = 19/284 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            + IL+ Y +  KK  GQNFL DL +L  I + +G  D   VIEIG G G LT+ L    
Sbjct: 13  TQAILNTYGLHAKKKFGQNFLTDLTVLHGIVDIAGITDQDYVIEIGPGIGALTEQLA-RA 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----FNISSPIRIIANL 125
           A+KV+  E D Q   +L +    + N +++I  D L ++  +     F   + ++++ANL
Sbjct: 72  AKKVVAFEIDTQMVDVLSETLQPYDN-VKVINGDILDINLPEVIRAEFGEEAHVKVVANL 130

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T +L   +  +     W+++ ++ Q+EV ER+ A+  +  YG L+++  +  +A 
Sbjct: 131 PYYITTPILMQLLRTNIA---WDNIVVMMQREVAERLNAEVGTKAYGVLTLIIQYFAQAE 187

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRL 244
           +  ++S   F P+P V S V+   P    +     E L  + + +F  RRK+L  ++ + 
Sbjct: 188 LAIEVSAASFNPAPNVDSAVVKLTPLSPELVVAQPERLFGVIKGSFSHRRKSLWNNMLQT 247

Query: 245 GGEN---------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            G+           L QA I  ++RAE L ++    +   L   
Sbjct: 248 YGKEAVTKEKITKALDQANIAPSIRAERLDLKQLTALYLALKSQ 291


>gi|238028595|ref|YP_002912826.1| dimethyladenosine transferase [Burkholderia glumae BGR1]
 gi|237877789|gb|ACR30122.1| Dimethyladenosine transferase [Burkholderia glumae BGR1]
          Length = 276

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/276 (28%), Positives = 121/276 (43%), Gaps = 13/276 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  ++   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDTGVIDSIVSTIRPERGQRMVEIGPGLGALTGPVIERLATPEA 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     LK         LE+   DAL  DF           +RII NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLKQRFGSL---LELHAGDALGFDFGALALPGEQPSLRIIGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +    +         + Q EV ER+ A+  S  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLM---RFAERVVDQHFMLQNEVVERMVAEPGSKAFSRLSVMLQYRYVMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IPH         +  L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELAEVDVGVLGEVVTAAFSQRRKMLRNTLGAYRDV 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                 G +   RAE++ + ++ R+   +   +  A
Sbjct: 240 VDFEALGFDLARRAEDVGVAEYVRLARTVAATRPAA 275


>gi|317132589|ref|YP_004091903.1| dimethyladenosine transferase [Ethanoligenens harbinense YUAN-3]
 gi|315470568|gb|ADU27172.1| dimethyladenosine transferase [Ethanoligenens harbinense YUAN-3]
          Length = 284

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 141/288 (48%), Gaps = 15/288 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT       +K +L+ +     K +GQNFL++ ++  ++A   G+ +   V+EIG G G 
Sbjct: 1   MTDLANPAQIKALLARHGFHFSKALGQNFLINPSVCPRMAALCGAEEAAGVLEIGPGIGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSP 118
           LT  L    A+KV+ +E D +  P+L +   Q  N + ++Q DA++ D           P
Sbjct: 61  LTAELARR-AKKVVALELDTRLLPVLAETLDQFSN-VRVVQGDAMEADLAALIREEFGGP 118

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           + + ANLPY I + LL   + +        ++T++ QKE   RI A   S   G +S+  
Sbjct: 119 VAVCANLPYYITSPLLMRLLESHLP---VTAVTVMVQKEAAARICAAPGSRDTGAVSLAV 175

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKT 236
            +     ++FD+S   F P P+V S VI    H  P         L ++ + AF +RRK 
Sbjct: 176 RYYASPRVLFDVSAGSFLPRPQVDSCVIRLDLHQEPPVAVRNEALLFRVVRAAFAQRRKM 235

Query: 237 LRQS------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LR +      L R      L +AG++ +LR E L++ DF R+ + L +
Sbjct: 236 LRSALPAGLGLPRERVAAALRKAGVDESLRGERLTLADFARVADALAE 283


>gi|198276988|ref|ZP_03209519.1| hypothetical protein BACPLE_03195 [Bacteroides plebeius DSM 17135]
 gi|198270513|gb|EDY94783.1| hypothetical protein BACPLE_03195 [Bacteroides plebeius DSM 17135]
          Length = 267

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 135/261 (51%), Gaps = 8/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + V+E+G G G LTQ LL    R + V+E 
Sbjct: 4   VKPKKFLGQHFLKDLQVAQDIADTVDACPALPVLEVGPGMGVLTQYLLK-KDRPLKVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++   Q  +   II+ D LK+D  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DFESVAYLRENFPQLGD--HIIEQDFLKMDLRQLFD-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A+  +  YG LSVL         +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAARPGNKTYGILSVLIQAWYSVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K+I +  F +RRKTLR S+  +  +     A    
Sbjct: 177 PKVKSAVIRMTRNETKELGCNEQLFKQIVKTTFNQRRKTLRNSISPILEKGNPLSADPIF 236

Query: 258 NLRAENLSIEDFCRITNILTD 278
           N R E LS++DF  +TN + +
Sbjct: 237 NKRPEQLSVQDFIDLTNRVEE 257


>gi|284033600|ref|YP_003383531.1| dimethyladenosine transferase [Kribbella flavida DSM 17836]
 gi|283812893|gb|ADB34732.1| dimethyladenosine transferase [Kribbella flavida DSM 17836]
          Length = 295

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 18/278 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQML 65
              ++++ +   + P K  GQNF++D N +++I  ++     G TV+EIG G G+LT  L
Sbjct: 17  PADVRSLAASLGLRPTKQRGQNFVIDPNTVRRIVRAAELDPAGETVLEIGPGLGSLTLAL 76

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRI 121
           L  G  +V  +E D      L    + +     +R  +++ DA+ V  E      +P   
Sbjct: 77  LAEG-HRVTAVEIDPLLAAALPATIASYAPAQADRFTVVEADAMAVQAEAI---GTPTAC 132

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   +L + ++     P      ++ Q EV +R+ A   S  YG  S    W 
Sbjct: 133 VANLPYNVAVPVLLHLLAIA---PSLRHGLVMVQSEVADRLAAPPGSRTYGVPSAKAAWY 189

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQS 240
            +      I  +VF+P+P V S ++ F     P      + +  + + AF +RRKT+R +
Sbjct: 190 AEVRRAGPIGRNVFWPAPNVDSGLVAFARREPPATSASRQEVFAVIEAAFSQRRKTIRSA 249

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           L R        + +L  AG++  LR E L I DF  + 
Sbjct: 250 LARWVPDRPTLDAVLAAAGVDPGLRGEMLGIADFAALA 287


>gi|289577364|ref|YP_003475991.1| dimethyladenosine transferase [Thermoanaerobacter italicus Ab9]
 gi|289527077|gb|ADD01429.1| dimethyladenosine transferase [Thermoanaerobacter italicus Ab9]
          Length = 272

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 145/271 (53%), Gaps = 16/271 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +  KK  GQNF+ D NIL KI  +SG +    V+EIG G G LT+ L     +KVI  E
Sbjct: 5   GVNVKKKWGQNFMFDKNILTKIVTASGVIPEDFVLEIGTGLGTLTEELAKR-VKKVISFE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLL 134
            D++ + + K+  + + N + II +D +K D  K  N      P +++ANLPY I + ++
Sbjct: 64  IDRELYAVAKEKLNIYDN-VIIINEDIMKADLNKIANEYFEGKPFKVVANLPYYITSPII 122

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
              +       F + +T+L QKEV ERI A   +  YG L+V   ++ K  M+F++ P V
Sbjct: 123 MMLLDCK----FVKEITVLVQKEVAERICALPGTKDYGILTVFANFKAKPKMLFNLPPTV 178

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLH 251
           F P PKV S+++      +P+      E    + + AFG+RRK L  +LK LG  + ++ 
Sbjct: 179 FVPPPKVDSSLVKLEVLDDPLVEVKDEELFSNVVKAAFGQRRKVLSNALKTLGFPKEIID 238

Query: 252 QA----GIETNLRAENLSIEDFCRITNILTD 278
           +A     +    R E LSIE+F  + N++ D
Sbjct: 239 KAFTLSNLSPQRRGETLSIEEFAVLANVIYD 269


>gi|159030325|emb|CAO91220.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 268

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 132/266 (49%), Gaps = 12/266 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI P+K  GQ++L D +IL +I  ++       V+EIG G G LT+ LL  GA+ V+ +E
Sbjct: 2   KIQPRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLD-GAQLVVAVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+  + IL     Q  N   +I  D L +  E+   ++   +++AN+PYNI   +L   
Sbjct: 61  IDRDLWTILNKKFGQQDN-FHLIPGDFLTLKPEQLPPVN---KVVANIPYNITGPILEKL 116

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +   P  P ++S+TLL QKEV ER+ A  ++  Y  LSV   +      + D+    F
Sbjct: 117 LGSIAHPFTPPYQSITLLLQKEVAERLVAVPSTKAYSALSVRIQYLADCQWICDVPRRAF 176

Query: 196 FPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LL 250
            P P+V S VI  +P + P        L  +    F  RRK LR +LK     +    +L
Sbjct: 177 SPPPRVDSAVIQILPRVFPKNVGNAAFLSTLISWGFANRRKMLRNNLKNCLDSDRLSQIL 236

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
            Q  I    RAE+LS+  +  +   L
Sbjct: 237 TQLEINPLARAEDLSLSQWIDLAEKL 262


>gi|281345012|gb|EFB20596.1| hypothetical protein PANDA_016957 [Ailuropoda melanoleuca]
          Length = 345

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 142/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L+I+  D L    E+ F         +  
Sbjct: 74  LNANVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+N+ T L+  W+   +            +TL FQKEV ER+TA   S   
Sbjct: 134 PNVHIIGNLPFNVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEVAERLTANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +  I    F P P+V   V+ F P + P I    + ++K+ + AF
Sbjct: 194 SRLSVMAQYLCDVQHILTIPGQAFVPKPEVDVGVVRFTPLVRPRIEQPFKLVEKVVENAF 253

Query: 231 GKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L  L          E LL  A ++  L+   LS+  F  + ++     D
Sbjct: 254 QFRRKYCYRGLGMLFPEIQRVESTEKLLELADVDPTLQPSQLSVSHFKSLCHVYQKMCD 312


>gi|224048037|ref|XP_002196390.1| PREDICTED: similar to Tfb1m protein [Taeniopygia guttata]
          Length = 351

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 145/299 (48%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++  I+  +++   K + QNFLLDL +  KI + +G L    V E+G GPG +T+ +
Sbjct: 14  PLPTIGEIIKLFRLKALKQLSQNFLLDLRLTDKIVKQAGELKNAHVCEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L+ G  ++++IEKD +F P L+ +S   P ++ I+  D L    EK F         +  
Sbjct: 74  LSAGVEQLLLIEKDARFIPGLQMLSEAAPGKVRIVHGDILTYKMEKAFPKHLKKSWDDEP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171
             I II NLP+++ T L+  W+   +    PF      +TL FQKEVGER+TA   S   
Sbjct: 134 PDIHIIGNLPFSVSTPLIIKWLENVSKRDGPFIYGRTQMTLTFQKEVGERLTANPGSSQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++          F I    F P P+V   V+HF P + P I    E ++K+ Q  F
Sbjct: 194 SRLSIMAQHLCTVENCFIIPGQAFVPKPEVDVAVVHFTPLVQPKIEQPFELVEKVVQSVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + ++ L  EN        L+  A ++  LR   LS+  F  + N      D
Sbjct: 254 QFRRKYCFRGIETLFPENGRLKRTEQLMMTANVDPTLRPFQLSMSQFRNLCNAYRKMCD 312


>gi|225011219|ref|ZP_03701678.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-3C]
 gi|225004633|gb|EEG42596.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-3C]
          Length = 286

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 94/267 (35%), Positives = 131/267 (49%), Gaps = 14/267 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D  + +KIAE+        VIEIG G G LTQ LL      ++ ++ 
Sbjct: 22  VRAKKHLGQHFLKDQVVARKIAETLLLNGYDNVIEIGPGTGVLTQYLLEQDIN-ILALDL 80

Query: 79  DQQFFPILKDISS-------QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D++    LK           Q     E+   D LK D    FN  +P  I  N PYNI T
Sbjct: 81  DRESIEYLKTDFEINHLKLLQRKKSFEVRNADFLKEDLSTLFN-GAPFGITGNFPYNIST 139

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +++F  +      P +  +   FQKEV +RI  ++ S  YG LSVL     +A  +F + 
Sbjct: 140 QIVFKMLEYKDRVPEFTGM---FQKEVAQRICEKEGSKAYGILSVLVQAFYEAEYLFTVH 196

Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           P VF P PKV S V+      N  I C    LK + + AF +RRKTLR SLK L     L
Sbjct: 197 PEVFNPPPKVQSGVLRLTRKENQSIDCSETLLKTVVKAAFNQRRKTLRNSLKTLQLSENL 256

Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277
            +  I  + R E +S+ DF  +T  + 
Sbjct: 257 TKDAI-FDKRPEQISVADFIALTKKIA 282


>gi|209519022|ref|ZP_03267830.1| dimethyladenosine transferase [Burkholderia sp. H160]
 gi|209500534|gb|EEA00582.1| dimethyladenosine transferase [Burkholderia sp. H160]
          Length = 280

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/272 (28%), Positives = 122/272 (44%), Gaps = 13/272 (4%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            + +    H   + +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L+ 
Sbjct: 2   STSRQHGRHQGHLARKRFGQNFLVDMGVIDSIVDVIRPQRGERMVEIGPGLGALTEPLIE 61

Query: 68  LGA---RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRII 122
             A     +  +E D+     LK         LE+   DAL+ DF           +RI+
Sbjct: 62  RLATPEAPLHAVELDRDLIGRLKKKFGDL---LELHAGDALEFDFGSLAAPGEKASLRIV 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI + LLF+     T+         + Q EV ER+ A+  +  + RLSV+  +R 
Sbjct: 119 GNLPYNISSPLLFHL---ATFADRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRY 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQS 240
                 D+ P  F P PKV S ++  IP+            L ++   AF +RRK LR +
Sbjct: 176 VIDKQLDVPPEAFQPPPKVDSAIVRMIPYELHELPVVDENVLGEVVTAAFSQRRKMLRNT 235

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272
           L  L         G +   RAE++ + ++  +
Sbjct: 236 LGALRDTVDFDALGFDLQRRAEDVPVAEYVSV 267


>gi|91216107|ref|ZP_01253075.1| dimethyladenosine transferase [Psychroflexus torquis ATCC 700755]
 gi|91185624|gb|EAS71999.1| dimethyladenosine transferase [Psychroflexus torquis ATCC 700755]
          Length = 288

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 94/271 (34%), Positives = 143/271 (52%), Gaps = 15/271 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL+D +I K+IAE+    +  +V+EIG G G LT+ LL   + + + ++ 
Sbjct: 25  VKAKKHLGQHFLIDEDISKRIAETLQKDNYSSVLEIGPGMGVLTKYLLGKYS-QFVAMDL 83

Query: 79  DQQFFPIL------KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           D++    L      +    +    L +I+ D LKVD   +F  +    II N PYNI T+
Sbjct: 84  DRESIAFLNSSFKKEHHIEEDSKALTVIEADFLKVDLSDYFRDTQ-FAIIGNFPYNISTQ 142

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++F  +      P +  +   FQKEV +RI A + S  YG LSVL     KA  +F + P
Sbjct: 143 IVFKTLEYKEQIPEFSGM---FQKEVAQRICASEGSKTYGILSVLVQAFYKAEYLFTVPP 199

Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
             F P PK+ S V+      N  +PC  + L+ + + AF +RRKTLR SLK+      L 
Sbjct: 200 EAFDPPPKIHSGVLRLQRKENYELPCEEKKLRDVVKTAFQQRRKTLRNSLKKFNLSPELR 259

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           +  I    R E LS+E F  +T  L  +QD+
Sbjct: 260 EDPI-FTKRPEQLSVEQFIDLT--LKISQDV 287


>gi|157826080|ref|YP_001493800.1| dimethyladenosine transferase [Rickettsia akari str. Hartford]
 gi|166221695|sp|A8GPG7|RSMA_RICAH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157800038|gb|ABV75292.1| dimethyladenosine transferase [Rickettsia akari str. Hartford]
          Length = 273

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 107/276 (38%), Positives = 153/276 (55%), Gaps = 9/276 (3%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+   ++ ++I P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHVASHQINPLKKHGQNFIFDSSLCDKIVRASHLAENSRVLEIGPGTGGLTRSILQ 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                + VIE D++F P+L +I   +PN L II+ DALK++          + II+NLPY
Sbjct: 63  KNPESLTVIETDERFIPLLNEIKEYYPN-LNIIKQDALKINLTDL--DYDKVTIISNLPY 119

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +IGT L+  W+           +TL+ QKEV ERI A  ++  YGRLSV+     K    
Sbjct: 120 HIGTELVIRWLKEAR---LITDMTLMLQKEVVERICAMPSTKAYGRLSVICQLIAKVEKC 176

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246
           FD+SP  F+P PKV S ++  IP  NP    L   ++KIT  AF  RRK ++ SLK L  
Sbjct: 177 FDVSPTAFYPPPKVYSAIVKLIPLANPPSIALINRVEKITTFAFAGRRKMIKSSLKNLVP 236

Query: 247 E--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
               +L Q  I  N RAENL+ +D+ RI   L+ N+
Sbjct: 237 NIHEVLTQLKINDNYRAENLAPQDYLRIAMSLSVNK 272


>gi|312878167|ref|ZP_07738097.1| dimethyladenosine transferase [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311795057|gb|EFR11456.1| dimethyladenosine transferase [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 282

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 149/284 (52%), Gaps = 13/284 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        L ++L  Y + P K +GQNFL+D N+++KI   S   +G  V+EIGAGPG 
Sbjct: 1   MNPAITKTELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFSQV-EGKEVVEIGAGPGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  L    A+KV  +E D++   +LK++     N ++I+  D L+++ +   N  + + 
Sbjct: 60  LTVYLAKT-AQKVFAVEIDKKILNVLKEVCQVISN-VQIVNSDFLELNVKDLTN-GNKVY 116

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ NLPY + +++LF            E  T++ QKEV +R+ A+  +  YG L+V   +
Sbjct: 117 IVGNLPYYVTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNF 173

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +    F +S +VF+P P+V S V+     +       ++  KI    F  RRKT+  +
Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKNFFKIVHACFSTRRKTILNA 233

Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L           + ++H AG++ NLRAE+LS++D+ R+     +
Sbjct: 234 LSNQLDIAKEELKKIIHMAGLDENLRAEDLSLDDYIRLYQCFEE 277


>gi|226307847|ref|YP_002767807.1| dimethyladenosine transferase [Rhodococcus erythropolis PR4]
 gi|229494958|ref|ZP_04388709.1| dimethyladenosine transferase [Rhodococcus erythropolis SK121]
 gi|259494255|sp|C1A383|RSMA_RHOE4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226186964|dbj|BAH35068.1| dimethyladenosine transferase [Rhodococcus erythropolis PR4]
 gi|229318182|gb|EEN84052.1| dimethyladenosine transferase [Rhodococcus erythropolis SK121]
          Length = 299

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 19/278 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +   + + P K +GQNF+ D N +++I  ++G      V+E+G G G+LT  L+ +
Sbjct: 25  EVRALAEEFGVRPTKQLGQNFVHDANTVRRIVTTAGVTRDDVVLEVGPGLGSLTMALMDV 84

Query: 69  GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
              +VI +E D      L     + + +  +RL +++ DA++V   +      P  ++AN
Sbjct: 85  -VDRVIAVEIDPNLAARLPKTVAERAPELADRLTVVEADAMRVLPSQI--PGEPTALVAN 141

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L +  ++    P   +  ++ Q EV +R+ A   S  YG  SV   +  + 
Sbjct: 142 LPYNVAVPVLLHLFAS---LPSLRTALVMVQAEVADRLAADPGSKIYGVPSVKANFFGEV 198

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKI---TQEAFGKRRKTLRQS 240
                +  +VF+P PKV S ++    +  P  P   +  K++      AF +RRKTLR +
Sbjct: 199 RRAGAVGRNVFWPVPKVESGLVRIDRYAEPPWPMDEKHRKQVFAAIDAAFAQRRKTLRAA 258

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           L    G     E  L  AGIE   R E L    F R+ 
Sbjct: 259 LSGWAGSPAEAERRLLAAGIEPQTRGEMLDAAAFVRLA 296


>gi|312792586|ref|YP_004025509.1| dimethyladenosine transferase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179726|gb|ADQ39896.1| dimethyladenosine transferase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 282

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 149/284 (52%), Gaps = 13/284 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        L ++L  Y + P K +GQNFL+D N+++KI   S   +G  V+EIGAGPG 
Sbjct: 1   MNPAITKTELLSLLEKYGLSPNKKLGQNFLVDENVVRKIILFSQV-EGKEVVEIGAGPGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  L    A+KV  +E D++   +LK++     N ++I+  D L+++ +   N  + + 
Sbjct: 60  LTVYLAKT-AQKVFAVEIDKKILNVLKEVCQVISN-VQIVNSDFLELNVKDLTN-GNKVY 116

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ NLPY + +++LF            E  T++ QKEV +R+ A+  +  YG L+V   +
Sbjct: 117 IVGNLPYYVTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNF 173

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +    F +S +VF+P P+V S V+     +       ++  KI    F  RRKT+  +
Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKNFFKIVHACFSTRRKTILNA 233

Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L           + ++H AG++ NLRAE+LS++D+ R+     +
Sbjct: 234 LSNQLDIAKDELKKIIHMAGLDENLRAEDLSLDDYIRLYQCFEE 277


>gi|260060929|ref|YP_003194009.1| dimethyladenosine transferase [Robiginitalea biformata HTCC2501]
 gi|88785061|gb|EAR16230.1| dimethyladenosine transferase [Robiginitalea biformata HTCC2501]
          Length = 321

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 129/270 (47%), Gaps = 14/270 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +  KK++GQ+FL D ++  +IA +        ++EIG G G LT  LL      ++ +E
Sbjct: 56  GVRAKKHLGQHFLTDASVAMRIAGTLSPDGPPRILEIGPGTGVLTAFLLRRPVD-LLAVE 114

Query: 78  KDQQFFPILKDIS-------SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            D +    L+++        +      E++  D LK+D    F    P  +  N PYNI 
Sbjct: 115 LDGESVKYLREVFPLELASETTSYKSFEVLHGDFLKLDLPGLFG-GKPFAVTGNFPYNIS 173

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T+++F  +      P +  +   FQ+EV ERI A   S  YG LSVL      A   F +
Sbjct: 174 TQIVFRVLENRERIPEFSGM---FQREVAERICAGPGSKTYGILSVLVQAYYLAEYRFTV 230

Query: 191 SPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
            P VF P PKV S V+H     +       + L ++ + AF +RRKTLR SLK L   + 
Sbjct: 231 PPEVFDPPPKVESGVLHLRYRTDTRADWDYQHLTRLVKTAFNQRRKTLRNSLKSLPVPDY 290

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L +  I  + R E L + +F  ++  + D+
Sbjct: 291 LKEDAI-FDRRPEQLEVREFIALSKRIWDD 319


>gi|296169879|ref|ZP_06851491.1| dimethyladenosine transferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895435|gb|EFG75137.1| dimethyladenosine transferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 317

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/290 (28%), Positives = 136/290 (46%), Gaps = 19/290 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +       P+K +GQNF+ D N +++I  ++G      V+E+G G G+LT  LL
Sbjct: 19  RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRIVSTAGVGRSDHVLEVGPGLGSLTLALL 78

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L    ++H     +RL ++  D L +  ++    + P  ++
Sbjct: 79  DRGA-AVTAVEIDPVLAERLPLTVAEHSHSEIHRLTVLNRDVLTLGPDELA--AEPNAVV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + ++     P  +++T++ Q EV ER+ A+     YG  SV   +  
Sbjct: 136 ANLPYNVAVPALLHLLAD---FPSIQTVTVMVQAEVAERLAAEPGGKDYGVPSVKVRFFG 192

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL---ESLKKITQEAFGKRRKTLR 238
                  +SP VF+P P+V S ++    +   P P        + ++   AF +RRKT R
Sbjct: 193 TVRRCGTVSPAVFWPIPRVYSGLVRIDRYPTAPWPTDEAFRRQVFRLVDIAFAQRRKTAR 252

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            +     G      N L  A I+   R E LS++DF R+    T+  D A
Sbjct: 253 NAFVDWAGSGNESANRLLAASIDPARRGETLSVDDFVRLLRRSTEPADTA 302


>gi|294674235|ref|YP_003574851.1| dimethyladenosine transferase [Prevotella ruminicola 23]
 gi|294473004|gb|ADE82393.1| dimethyladenosine transferase [Prevotella ruminicola 23]
          Length = 263

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 12/266 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           ++ PKK +GQ+FL DLNI K+IA++  +   I V+E+G G G +TQ L+    R   V+E
Sbjct: 3   QVRPKKNLGQHFLTDLNIAKRIADTVDACPNIPVLEVGPGMGVMTQYLVE-KPRPFKVVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D++    L++   +  +   II  D L++D  + F+      +  N PY+I +++ F  
Sbjct: 62  IDRESVAYLQENFPRLNDN--IIGGDFLRMDLREVFD-GQQFVLTGNYPYDISSQIFFKM 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P     T + Q EV  R+ +Q  +  YG LSVL         +F + P VF P
Sbjct: 119 LDNKDLIP---CCTGMIQHEVAVRMASQPGNKQYGILSVLIQAWYNVEYLFTVEPGVFNP 175

Query: 198 SPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    +    + C  +  +++ +  F +RRK LR SL+++   N    AG  
Sbjct: 176 PPKVQSAVIRMTRNEVTDLGCDEQLFRRVVKATFNQRRKMLRVSLRQIFDANHPAPAGFF 235

Query: 257 T----NLRAENLSIEDFCRITNILTD 278
                  R E LSI  F  +TN +  
Sbjct: 236 DDEIMTRRPEQLSIPQFIELTNKVAS 261


>gi|190570949|ref|YP_001975307.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019465|ref|ZP_03335271.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|226732639|sp|B3CPY6|RSMA_WOLPP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|190357221|emb|CAQ54639.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994887|gb|EEB55529.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 264

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 106/264 (40%), Positives = 151/264 (57%), Gaps = 8/264 (3%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  + + PKK +GQNF+L   I+K+I   +GSL    VIEIG G G LT+ +L    + +
Sbjct: 1   MRKFLLKPKKSLGQNFILSNEIIKRIVALAGSLKDFNVIEIGPGYGALTREILAYNPKFL 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           + IEKD       + + ++H  +  II+ DAL V  ++   +  P+++IANLPYNI   L
Sbjct: 61  LSIEKDSSLVKHHEQLLNEHQGKYRIIEADALNVVEKEL--VECPVKVIANLPYNISVAL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
              W++      F+ +LTL+FQKEV ERITA+ NS  YG LSVL+         FDI P 
Sbjct: 119 FLKWLNN---IKFFTNLTLMFQKEVAERITAEPNSKDYGSLSVLSQLLCDIKKEFDIEPK 175

Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLL 250
            FFP PKV S+VI   P   P     LE+L K+T+  F +RRK LR SL+ +  +    L
Sbjct: 176 EFFPRPKVYSSVITVKPLPTPRFAVNLETLTKLTRAVFAQRRKMLRNSLQSITSDVSTTL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITN 274
             A +  + R E+L+IE FC + N
Sbjct: 236 ENAKLSGDERPESLTIEQFCLLAN 259


>gi|215426288|ref|ZP_03424207.1| dimethyladenosine transferase [Mycobacterium tuberculosis T92]
          Length = 377

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 19/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +       P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL
Sbjct: 16  RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALL 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L+   ++H     +RL ++  D L +  E     ++P  ++
Sbjct: 76  DRGA-TVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLA--AAPTAVV 132

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + +      P    +T++ Q EV ER+ A+  S  YG  SV   +  
Sbjct: 133 ANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFG 189

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238
           +      +SP VF+P P+V S ++    +        ++ ++    +   AF +RRKT R
Sbjct: 190 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 249

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
            +  +  G      N L  A I+   R E LSI+DF R+
Sbjct: 250 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288


>gi|323706303|ref|ZP_08117869.1| dimethyladenosine transferase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534355|gb|EGB24140.1| dimethyladenosine transferase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 273

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/273 (32%), Positives = 140/273 (51%), Gaps = 16/273 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               KK +GQNF+ D  IL KI + SG      VIEIGAG G LT+ +L   A  V+  E
Sbjct: 6   GFNTKKRLGQNFIFDEGILSKIVDLSGITKNDNVIEIGAGLGTLTRKILE-KANMVVSYE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLL 134
            D++ + ILK       N L ++ DD +KVD  +  +        +++ANLPY I + ++
Sbjct: 65  IDKEAYEILKADFKGRDN-LIVLNDDIMKVDLRETVDAYFGGEKCKVVANLPYYITSPII 123

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
              + +       + +T++ QKEV ERI A+     YG L+V   + +K  ++ ++ P V
Sbjct: 124 MKLLESR----LMKDITIMVQKEVAERICAKPGGKDYGVLTVAVNYYSKPEILLNLPPEV 179

Query: 195 FFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----- 247
           F P PKV+S++I       P       +   +I + +FG+RRK +  SLK L  +     
Sbjct: 180 FSPKPKVSSSLIKLHVLDKPSVFVKDEKLFFRIVKSSFGQRRKVITNSLKSLSIDQSIIA 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           + L + GI+   R E LSIE F  + N + D +
Sbjct: 240 DALTKCGIDLKQRGETLSIEKFAELANTIYDMK 272


>gi|291543732|emb|CBL16841.1| dimethyladenosine transferase [Ruminococcus sp. 18P13]
          Length = 285

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 137/289 (47%), Gaps = 16/289 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++ +   +     K +GQNFL++  +  +IAE   +  G  V+EIG G G 
Sbjct: 1   MENLTNISVVQDLARRHGFHFSKGLGQNFLINPTVCPRIAELGNARPGFGVLEIGTGFGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           LT  L    A KV+ +E DQ+  P+L++  +   N ++I+  D +K+D            
Sbjct: 61  LTAELAKR-ADKVVAVEIDQRLLPVLEETLADFDN-VKIVPGDIMKIDVAALLRQEFGGL 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P+ + ANLPY I + +L   + +        S+T++ QKE  +R+ AQ  +   G ++V 
Sbjct: 119 PVAVCANLPYYITSPILMLLLESRLP---LTSITVMVQKEAAQRLCAQVGTREAGAITVG 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +  +A  +F +S   F P+P V S VI    H NP P  L+     ++ +  F +RRK
Sbjct: 176 VHYYGEARQLFPVSRGSFMPAPNVDSAVIRIDLHENPHPEGLDEGFFFRMVKAGFSQRRK 235

Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           TL  SL  L G         L QAG+    R E L++E    +  IL  
Sbjct: 236 TLANSLASLLGIPKQAVYAALEQAGLAPAARIEQLTMEQLFALARILQS 284


>gi|326336599|ref|ZP_08202768.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325691264|gb|EGD33234.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 259

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 102/267 (38%), Positives = 139/267 (52%), Gaps = 12/267 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +    + PKKY+GQ+FL DLNI ++IA +        V+EIGAG G LTQ LL L   + 
Sbjct: 1   MKKSPVQPKKYLGQHFLTDLNIAQQIANTLSFDGYKIVLEIGAGTGVLTQFLL-LKKTET 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            VIE D++    L+    Q  N   II  D LK D   +F+  +   II N PYNI +++
Sbjct: 60  FVIEIDKESVEYLQVHFPQLKN--HIIAKDFLKFDIVSYFS-KASFAIIGNFPYNISSQI 116

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F  +    + P +  +   FQKEV ERI  +  S  YG LSVLT        +F +  +
Sbjct: 117 IFKLLEIRFFVPEFAGM---FQKEVAERICEKAGSKAYGILSVLTQAFYDTEYLFTVPEN 173

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           VF P PKV S VIH     N  +PC       I +  FG+RRKTLR SLK    E    +
Sbjct: 174 VFNPPPKVKSGVIHLKRKENYSLPCDERLFFTIVKTTFGQRRKTLRNSLKSFLSEK--EE 231

Query: 253 AGIET--NLRAENLSIEDFCRITNILT 277
             + +  + R E LS+E+F  +T  LT
Sbjct: 232 LKVHSVFDRRPETLSVEEFITLTQWLT 258


>gi|253700557|ref|YP_003021746.1| dimethyladenosine transferase [Geobacter sp. M21]
 gi|251775407|gb|ACT17988.1| dimethyladenosine transferase [Geobacter sp. M21]
          Length = 275

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 94/278 (33%), Positives = 143/278 (51%), Gaps = 17/278 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI  KK  GQNFL+D ++L +I           ++E+G G G L+++L   GAR  + +E
Sbjct: 3   KIRAKKEFGQNFLVDDSVLTRIVACVAPTADDCILEVGPGRGALSRLLAESGAR-FLAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTRLL 134
            D++  P+LK   +   N +EI   D L+VD              ++ ANLPYNI +++L
Sbjct: 62  WDRELLPLLKAEFATAQN-VEIGHGDILRVDLPLLLGSRVEGKKWKVAANLPYNISSQVL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F ++        +E L L+ QKEVG+R+TA      YG L+VL          F + P  
Sbjct: 121 FRFMEHSE---LFEKLVLMLQKEVGDRLTAPPACKEYGALTVLLRLHFDIRREFIVKPGS 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248
           F P PKV S V+ F+P   P       E  +++ + AF +RRKTL  SL+  G ++    
Sbjct: 178 FRPVPKVDSAVLSFLPLPGPRVEVGDEELFRRVVKGAFLQRRKTLLNSLRSSGFDDADGF 237

Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
               L ++GI+   R E LS+E+F R+T  L   + +A
Sbjct: 238 LSAALSRSGIDGGRRGETLSLEEFARLTRELLAGKTLA 275


>gi|332982498|ref|YP_004463939.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON]
 gi|332700176|gb|AEE97117.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON]
          Length = 299

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 128/291 (43%), Gaps = 24/291 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +   +++ ++  Y   P K MGQNFL++   L  I   +       V+EIG G G LT  
Sbjct: 8   SSKSAVQRLIDRYNFKPNKAMGQNFLINKEALNAIVNGADISAEDEVLEIGPGLGTLTLK 67

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRI 121
           L    A  V  +E D++  P+LK       N + II+ D L     +            +
Sbjct: 68  LSERAAH-VTAVEVDKRIIPLLKQTLQDVGN-VSIIEGDFLNPMVAEEIKECLAGKSAIV 125

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS------PHYGRLS 175
           +ANLPY I T +L + I         +   L+ QKEV  R+ AQ  S        YG LS
Sbjct: 126 VANLPYYITTPVLMDIIEN---YIMIKRAVLMMQKEVAYRVVAQPGSRLSGSVKDYGVLS 182

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKR 233
           +   +     ++ ++    F PSP V S V+       P            + + AFG+R
Sbjct: 183 ISVQYYMDPQILLEVPRSDFLPSPDVDSAVVRLDRRDKPAVDVQDERMFFSLVKAAFGQR 242

Query: 234 RKTLRQSLK--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RKTL  +L         + G + +L +A I+ N RAE LS+++F  I N L
Sbjct: 243 RKTLFNALAGGLGYPLGKDGLKRVLERAHIDGNRRAETLSLQEFADIANEL 293


>gi|227486185|ref|ZP_03916501.1| dimethyladenosine transferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235816|gb|EEI85831.1| dimethyladenosine transferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 280

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 13/285 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        +K I+  Y     K +GQNFL+D N + KI E +    G  VIE+G G G 
Sbjct: 1   MRKLYSPKVVKDIIDLYGFRFSKSLGQNFLIDKNFVDKIVEGADI-AGKNVIEVGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           ++  +     +K+++IE D    PIL++  S   N + II  D LK D +K  +      
Sbjct: 60  ISYEMAKTC-KKLVLIEIDSSLIPILEENMSDFDN-VTIIHQDILKTDLKKIQDEYFGGE 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
               ++NLPY I T ++      D       S+T++ QKEV +R+ A +    Y  LSV 
Sbjct: 118 AFDFVSNLPYYITTPIIEKIFEEDL---DCHSMTIMVQKEVADRMLATEKDKDYSSLSVF 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             + ++A ++  +   VF P PK+ S+V+     +       E L  + +  F KRRKT+
Sbjct: 175 VKYYSEARLLTKVPKSVFMPQPKIDSSVLRLDLRIYDEKVNKERLFALVKAGFLKRRKTI 234

Query: 238 RQSLKRLGGENLLHQ----AGIETNLRAENLSIEDFCRITNILTD 278
             SL  +  ++ L +      ++ NLRAENLS++D+ +I N L +
Sbjct: 235 LNSLSAVAEKDDLKKVFEILNLKENLRAENLSLDDYIKIVNELEN 279


>gi|297537784|ref|YP_003673553.1| dimethyladenosine transferase [Methylotenera sp. 301]
 gi|297257131|gb|ADI28976.1| dimethyladenosine transferase [Methylotenera sp. 301]
          Length = 259

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 12/265 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K I KK  GQNFL D  ++  + ++        ++EIG G G LT+ LL    + + V+E
Sbjct: 2   KHIAKKRFGQNFLTDQGVISSLVDAISPKADDLMVEIGPGLGALTKPLLQRL-KLLHVVE 60

Query: 78  KDQQFFPILKD---ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            D+     ++      +   + + I   DALK DF+        +R+  NLPYNI T +L
Sbjct: 61  VDRDIIAWMQAEYGKRAYASSAISIHNADALKFDFKSL---GDNLRVTGNLPYNISTPIL 117

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +   +       +  + QKEV ER+ A  ++  YGRLSV+  +R +   +  + P  
Sbjct: 118 FHLLDNVSA---ITDMHFMLQKEVVERMVASPSTAAYGRLSVMLQYRLQMDYLITVPPEA 174

Query: 195 FFPSPKVTSTVIHFIPHLN-PIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P+PKV S  +  +PH   P     E+   K+   AFG+RRKTLR +LK L  +     
Sbjct: 175 FEPAPKVESAFVRCVPHAVLPFVAKDEAIFAKVVLAAFGQRRKTLRNTLKELLNDEGFTA 234

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
             I++  RAENL++ DF  I N L+
Sbjct: 235 LNIDSQQRAENLAVSDFVAIANYLS 259


>gi|169824244|ref|YP_001691855.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328]
 gi|167831049|dbj|BAG07965.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328]
          Length = 283

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 142/285 (49%), Gaps = 15/285 (5%)

Query: 3   MNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M+ K H    +K IL  +     K +GQNFL+D N+++ I + S   +   VIEIG G G
Sbjct: 1   MSYKLHQPSCIKEILDKFGFKFSKSLGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            LT+ L+    + +  IE D +   +LK       N  +II +D LKVD  +  +     
Sbjct: 61  TLTERLVD-KCKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVDLNELNHEDKKF 118

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++ +      +    ES+T++ QKEV  R+ A   S  Y  LS+   
Sbjct: 119 KVVANLPYYITTPIIEHLF---NYRDIIESITVMVQKEVANRMVADVGSKDYASLSLFVK 175

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
             + A ++ +    VF P PKV S V++            E L+++ +  F KRRKT+  
Sbjct: 176 QNSDAKIILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILN 235

Query: 240 SLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           S             + +L + G++ NLRAENLS+ED+  I   L+
Sbjct: 236 SFTSGFVNVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280


>gi|300812073|ref|ZP_07092521.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496912|gb|EFK31986.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 296

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 99/297 (33%), Positives = 151/297 (50%), Gaps = 25/297 (8%)

Query: 3   MNNK---SHSLKT--ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M N+   +  ++T  I++ Y +  KK +GQNFL+DL+ ++ I  ++G   G  V+E+G G
Sbjct: 1   MTNRIPIASPVRTAAIVNRYFVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALKVDFEK 111
            G+LT+ LL  G  KV   E DQ    IL +             R ++I  D LK DF  
Sbjct: 61  IGSLTEQLLLAGG-KVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFAT 119

Query: 112 ----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
               FF++  P++++ANLPY I T ++FN + +      + SLTL+ QKEV ER+ AQ  
Sbjct: 120 DLAGFFDLGKPVKVVANLPYYITTPIIFNLLESSL---DFTSLTLMMQKEVAERLAAQPG 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKIT 226
           S  YG LS+    +    +  ++    F P PKV S V+   P   P      +   ++ 
Sbjct: 177 SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           +  F +RRKTL  +LK L       E LL    ++   R E L+I DF RI+  + +
Sbjct: 237 KLCFAQRRKTLANNLKTLLPDKEDREKLLDDLDLDPRQRPEQLAIGDFIRISQAIAE 293


>gi|297543652|ref|YP_003675954.1| dimethyladenosine transferase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841427|gb|ADH59943.1| dimethyladenosine transferase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 273

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 145/271 (53%), Gaps = 16/271 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +  KK  GQNF+ D NIL KI  +SG +    V+EIG G G LT+ L     +KVI  E
Sbjct: 5   GVNVKKKWGQNFMFDKNILTKIVTASGVIPEDFVLEIGTGLGTLTEELAKR-VKKVISFE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLL 134
            D++ + + K+  + + N + II +D +K D  K  N      P +++ANLPY I + ++
Sbjct: 64  IDRELYAVAKEKLNIYDN-VIIINEDIMKADLNKIANEYFEGKPFKVVANLPYYITSPII 122

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
              +       F + +T+L QKEV ERI A   +  YG L+V   ++ K  M+F++ P V
Sbjct: 123 MMLLDCK----FVKEITVLVQKEVAERICALPGTKDYGILTVFANFKAKPKMLFNLPPTV 178

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLH 251
           F P PKV S+++      +P+      E    + + AFG+RRK L  +LK LG  + ++ 
Sbjct: 179 FVPPPKVDSSLVKLEILDDPLVEVKDEELFSNVVKAAFGQRRKVLSNALKTLGFPKEIID 238

Query: 252 QA----GIETNLRAENLSIEDFCRITNILTD 278
           +A     +    R E LSIE+F  + N++ D
Sbjct: 239 KAFTLSNLSPQRRGETLSIEEFAVLANVIYD 269


>gi|33598179|ref|NP_885822.1| dimethyladenosine transferase [Bordetella parapertussis 12822]
 gi|62900579|sp|Q7W4J6|RSMA_BORPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33566737|emb|CAE38949.1| dimethyladenosine transferase [Bordetella parapertussis]
          Length = 265

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 121/254 (47%), Gaps = 11/254 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQ+FL D ++++ I  + G      V+EIG G   LT+ LL      +  +E 
Sbjct: 4   HQARKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDR-IDHLTAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L+        RL +++ DAL VDF +F      +R++ NLPYNI + LLF+ +
Sbjct: 63  DRDLAARLRRQYPA--ERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLM 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            A            + Q+EV +R+ A+  S  Y RLSV+   R +  M+FD++P  F P 
Sbjct: 118 GAAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEMLFDVAPEAFDPP 174

Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P+V S V+   P       P    + + +   AF +RRK LR+ L          + GI 
Sbjct: 175 PRVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLGDWAALTPWDELGIA 234

Query: 257 TNLRAENLSIEDFC 270
              RAE + +  F 
Sbjct: 235 PTARAEEVGVAQFI 248


>gi|94676936|ref|YP_588992.1| dimethyladenosine transferase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|122064282|sp|Q1LSS2|RSMA_BAUCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94220086|gb|ABF14245.1| dimethyladenosine transferase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 271

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 138/265 (52%), Gaps = 8/265 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
              + +K +GQ+FL D NI++ I      L    ++EIG G G LT+ +     + + VI
Sbjct: 7   QGHLVRKCLGQHFLHDQNIIESIVAVIHPLPSQALVEIGPGLGALTKYVAKY-VKTITVI 65

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLF 135
           E D      L +      ++L I+  D +KV+F      +S P+RI  NLPYNI   L+F
Sbjct: 66  ELDHNLVAYLANH-PILQHKLNILSQDVMKVNFSDLAKKLSQPLRIFGNLPYNISIALMF 124

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           N             +  + QKEV  R+ A+ N+ +YG+LSV+     +  ++ D+ P  F
Sbjct: 125 NLF---RHIHMIRDMHFMLQKEVVSRLLAKPNNKNYGKLSVIAQHYCQIDLVLDVPPESF 181

Query: 196 FPSPKVTSTVIHFIPHL-NPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P P+V S V+  +P++  P P   +  L  +T  AF +RRKT+R SL+ L     L   
Sbjct: 182 RPVPQVDSAVVRLVPYVIPPYPVKDINKLYLLTSLAFQQRRKTIRNSLRNLFSVEQLLTQ 241

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           GI + LRAENLS+E +C + + L +
Sbjct: 242 GIISTLRAENLSVEQYCCLASTLAE 266


>gi|312623284|ref|YP_004024897.1| dimethyladenosine transferase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203751|gb|ADQ47078.1| dimethyladenosine transferase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 282

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 13/284 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        L  +L  Y + P K +GQNFL+D N+++KI       +G  VIEIGAGPG 
Sbjct: 1   MNPAITKTDLLNLLEKYGLSPNKKLGQNFLVDENVVRKII-LFSQAEGKEVIEIGAGPGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  L    A+KV  +E D++   +LKD+     N ++I+  D L+++ +   N  + + 
Sbjct: 60  LTVYLAKT-AQKVFAVEIDKKILNVLKDVCQSLSN-VQIVNSDFLELNVKNLTN-GNKVY 116

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +I NLPY + +++LF            E  T++ QKEV +R+ A+  +  YG L+V   +
Sbjct: 117 VIGNLPYYVTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNF 173

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +    F +S +VF+P P+V S V+     +       +   KI    F  RRKT+  +
Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSAVLRARFKVEEPNVDEKKFFKIVHACFSTRRKTILNA 233

Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L           + ++  AG++ NLRAE+LS++D+ R+     +
Sbjct: 234 LSNQLDIAKDELKKIILMAGLDENLRAEDLSLDDYIRLYQCFKE 277


>gi|255015789|ref|ZP_05287915.1| dimethyladenosine transferase [Bacteroides sp. 2_1_7]
 gi|256841738|ref|ZP_05547244.1| dimethyladenosine transferase [Parabacteroides sp. D13]
 gi|262384068|ref|ZP_06077204.1| dimethyladenosine transferase [Bacteroides sp. 2_1_33B]
 gi|298377078|ref|ZP_06987032.1| dimethyladenosine transferase [Bacteroides sp. 3_1_19]
 gi|256736632|gb|EEU49960.1| dimethyladenosine transferase [Parabacteroides sp. D13]
 gi|262294966|gb|EEY82898.1| dimethyladenosine transferase [Bacteroides sp. 2_1_33B]
 gi|298266062|gb|EFI07721.1| dimethyladenosine transferase [Bacteroides sp. 3_1_19]
          Length = 266

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 90/256 (35%), Positives = 129/256 (50%), Gaps = 9/256 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL I ++IA++  +   + V+EIG G G LTQ LL  G   + V+E 
Sbjct: 4   VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L         R  II +D LK+D  K F       +I N PYNI +++ F  +
Sbjct: 63  DMESVDYLNQNFPDLKGR--IIAEDFLKLDLSKLF--PGQFCVIGNYPYNISSQIFFKVL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     + + QKEV ER+ A   S  YG LSVL         +F +S  VF P 
Sbjct: 119 DYKDQIP---CCSGMLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVSEKVFDPP 175

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S V+    +    + C  +  K + + +F +RRKTLR S+K L G++    A    
Sbjct: 176 PKVKSAVLKMTRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDYALPIF 235

Query: 258 NLRAENLSIEDFCRIT 273
           + R E LS+E F  +T
Sbjct: 236 DKRPEQLSVEQFVELT 251


>gi|305665472|ref|YP_003861759.1| dimethyladenosine transferase [Maribacter sp. HTCC2170]
 gi|88710228|gb|EAR02460.1| dimethyladenosine transferase [Maribacter sp. HTCC2170]
          Length = 289

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 90/269 (33%), Positives = 141/269 (52%), Gaps = 14/269 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D +I K+IAE+   +    VIEIG G G LT+ LL      ++ ++ 
Sbjct: 25  VKAKKHLGQHFLKDESIAKQIAETLSFVGYKNVIEIGPGTGVLTKYLLQNEID-LVAMDL 83

Query: 79  DQQFFPILKDISS-QHP------NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D +    L +  + +HP      + L++++ D LK +    F+ S P  I  N PYNI T
Sbjct: 84  DSESIVYLNNNFALEHPEILGKKSSLKVVEADFLKYNLGLLFD-SEPFAITGNFPYNIST 142

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +++F  +      P +  +   FQKEV ERI A + +  YG LSVLT     A  +F + 
Sbjct: 143 QIVFKMLELKAQVPEFSGM---FQKEVAERICASEGNKTYGILSVLTQAFYNADYLFTVE 199

Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           P VF P PKV S V+  +   +  + C      ++ + AF +RRKTLR SLK     N+L
Sbjct: 200 PEVFDPPPKVHSGVMRLVRKDDFELGCDERLFFRVVKTAFNQRRKTLRNSLKSFDLSNIL 259

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
            +  I  + R E L++ +F  +   + D+
Sbjct: 260 KEDAI-FDQRPEQLTVSEFIELAKKIADD 287


>gi|167585502|ref|ZP_02377890.1| dimethyladenosine transferase [Burkholderia ubonensis Bu]
          Length = 275

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 119/263 (45%), Gaps = 13/263 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H     +K  GQNFL+D  ++  I  + G   G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIARLATPES 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     L+         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIVRLQQRFGPL---LELHAGDALAFDFRSLAAAGDKPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     M D
Sbjct: 123 SSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKMMD 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYEPHELPDVDPVLLGEVVTAAFSQRRKMLRNTLGDYRET 239

Query: 248 NLLHQAGIETNLRAENLSIEDFC 270
                 G +   RAE++S+ ++ 
Sbjct: 240 VDFDALGFDLARRAEDVSVAEYV 262


>gi|319953425|ref|YP_004164692.1| dimethyladenosine transferase [Cellulophaga algicola DSM 14237]
 gi|319422085|gb|ADV49194.1| dimethyladenosine transferase [Cellulophaga algicola DSM 14237]
          Length = 289

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 91/269 (33%), Positives = 136/269 (50%), Gaps = 14/269 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D +I K+IAE+         IEIG G G LT+ +L      ++ ++ 
Sbjct: 25  VKAKKHLGQHFLKDEDIAKQIAETLTFKGYENAIEIGPGTGVLTKYILEQDIN-LVAMDL 83

Query: 79  DQQFFPILKDISS-QHPN------RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D +    L D    +HP         ++I+ D LK D    F       I  N PYNI T
Sbjct: 84  DSESIVYLNDSFLLEHPKFIGRKKEFKVIEADFLKYDVSTLFGDEQ-FAITGNFPYNIST 142

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +++F  +      P +  +   FQKEV +RI  ++ S  YG LSVL      A  +F + 
Sbjct: 143 QIVFKLLEIRNLVPEFSGM---FQKEVAQRICEKEGSKTYGILSVLVQAFFDAEYLFTVP 199

Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           P VF P PKV S V+      N  + C  +SL ++ + AFG+RRKT+R SLK     + L
Sbjct: 200 PTVFNPPPKVESGVLRLTRKENQTLDCNEKSLYRVVKAAFGQRRKTIRNSLKTFNLSDSL 259

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
            +  I  + R E LS+ DF  +TN + ++
Sbjct: 260 REDTI-FDKRPEQLSVTDFISLTNKIDND 287


>gi|298207337|ref|YP_003715516.1| dimethyladenosine transferase [Croceibacter atlanticus HTCC2559]
 gi|83849973|gb|EAP87841.1| dimethyladenosine transferase [Croceibacter atlanticus HTCC2559]
          Length = 269

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 85/268 (31%), Positives = 129/268 (48%), Gaps = 13/268 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D    +KI  +        V+EIG G G LT+ LL      +  ++ 
Sbjct: 5   VRAKKHLGQHFLNDEETAEKIGNTLSFKGYDHVLEIGPGTGVLTKYLLEKDV-ALTAMDL 63

Query: 79  DQQFFPILKDISS-QHPNR-----LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           DQ+    LKD  S +H ++       ++  D LK D  + F       I  N PYNI T+
Sbjct: 64  DQESVDYLKDHFSIEHASKISSKSFRVLYADFLKYDLSQLFGDEQ-FAITGNFPYNISTQ 122

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++F  +      P +  +   FQKEV +RI  ++ S  YG LSVL      A  +F + P
Sbjct: 123 IVFKTLELRDQIPEFTGM---FQKEVAKRICEKEGSKAYGILSVLAQAFYNAEYLFTVPP 179

Query: 193 HVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            VF P PKV S V+      +  +    +   ++ ++AF +RRKTLR SLK     + L 
Sbjct: 180 TVFNPPPKVESGVLRLTRKEDYSLNVDEKLFFRVVKQAFQQRRKTLRNSLKTFQLSDELR 239

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
              I  N R E LS+  F  +T ++  +
Sbjct: 240 VNDI-FNKRPEQLSVAAFLELTALIQKD 266


>gi|91205019|ref|YP_537374.1| dimethyladenosine transferase [Rickettsia bellii RML369-C]
 gi|119365058|sp|Q1RK29|RSMA_RICBR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91068563|gb|ABE04285.1| Dimethyladenosine transferase [Rickettsia bellii RML369-C]
          Length = 268

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 101/272 (37%), Positives = 151/272 (55%), Gaps = 9/272 (3%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + ++I P K  GQNF+ D ++  KI  +SG  +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHAASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSILH 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              + + VIE D++  P+L +I   HPN L II+ DALK+        ++ I II+NLPY
Sbjct: 63  KNPKLLTVIETDERCIPLLNEIKQYHPN-LNIIKQDALKLKLSDL--NTNKITIISNLPY 119

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +IGT L+  W+   +      S+TL+ QKEV ERI A+ ++  YGRLSV+          
Sbjct: 120 HIGTELVIRWLKESS---LVASMTLMLQKEVVERICAKPSTKAYGRLSVICSLIATVEKC 176

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246
           FD++P  F+P PKV S ++   P  N     L   ++ IT+ AF  RRK ++ SLK L  
Sbjct: 177 FDVAPTAFYPPPKVYSAIVKLTPLENIPNSDLISKVELITKMAFAGRRKMIKSSLKNLAP 236

Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
               LL +  I  N RAENL+  D+  + +++
Sbjct: 237 NISELLAKLNISDNCRAENLTPNDYLSLASLI 268


>gi|305681981|ref|ZP_07404785.1| dimethyladenosine transferase [Corynebacterium matruchotii ATCC
           14266]
 gi|305658454|gb|EFM47957.1| dimethyladenosine transferase [Corynebacterium matruchotii ATCC
           14266]
          Length = 289

 Score =  255 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 15/278 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQM 64
              ++T+ S   I P K +GQNFL D N ++ I  ++   D     V+E+G G G+LT  
Sbjct: 9   PADIRTLASELDITPTKKLGQNFLHDPNTVRMIVTTAQFTDVTNRHVLEVGPGLGSLTLG 68

Query: 65  LLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           L+T    KV  IE D +    L     + +  + +RL +   DAL V  +     + P  
Sbjct: 69  LVTAC-EKVTAIEIDPRLAARLPRTIAEFAPDYADRLTVSNRDALTVSPQDIDMSTPPTA 127

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+   +L + ++     P    + ++ Q EV +R+ A+  +  YG  SV   +
Sbjct: 128 LVANLPYNVSVPILLHLLAE---FPSIARVVVMVQAEVADRLAARPGTKIYGVPSVKAAF 184

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +      I  +VF+P+PK+ S ++             +++  +   AF +RRKTLR +
Sbjct: 185 YGQVRRAGTIGKNVFWPAPKIDSGLVSIDCTHPYSSSLRDTVFPLIDAAFLQRRKTLRAA 244

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           L  + G     E  L +A I+  LR E L I DF R+ 
Sbjct: 245 LSGVYGSASQAEEALRRAQIDPTLRGEKLDISDFIRLA 282


>gi|298253263|ref|ZP_06977055.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis 5-1]
 gi|297532658|gb|EFH71544.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis 5-1]
          Length = 298

 Score =  255 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 131/282 (46%), Gaps = 12/282 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   ++KI  ++    G  V+E+G G G+LT  +L
Sbjct: 20  AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAEVKSGDIVMEVGPGLGSLTLAIL 79

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIR 120
             GA ++  +E D      L    ++   Q   +  +I  DAL V+ +    I  +    
Sbjct: 80  QTGA-QLTAVEIDPPLARRLPHTVEEFMPQSMQKFNVILKDALTVNADDVPQIAQAKQFT 138

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T ++   +   +    +  +    QKEV +R+ AQ  +  YG  SV   W
Sbjct: 139 LVANLPYNVATPIILTLLEKFSNLQNFLVMV---QKEVADRLCAQPGNKVYGTPSVKLAW 195

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238
             KA     I  +VF+PSP V S ++ F  +        E   +      AF +RRKTL 
Sbjct: 196 YGKAQRAGLIGRNVFWPSPNVDSALVSFTRNCTGKGDNNEREGVFAFIDAAFQQRRKTLH 255

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +LK    E     +GI+   R E L+ ++F  +     D +
Sbjct: 256 AALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKDCK 297


>gi|111022636|ref|YP_705608.1| dimethyladenosine transferase [Rhodococcus jostii RHA1]
 gi|118600893|sp|Q0S4T6|RSMA_RHOSR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|110822166|gb|ABG97450.1| probable rRNA dimethyladenosine transferase [Rhodococcus jostii
           RHA1]
          Length = 296

 Score =  255 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 128/280 (45%), Gaps = 19/280 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +   + + P K +GQNF+ D N +++I  ++G     TV+E+G G G+LT  LL
Sbjct: 19  PAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVATAGVGREDTVLEVGPGLGSLTLALL 78

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            +   KVI +E D      L     D + +  +RL ++  DA++V   +      P  ++
Sbjct: 79  DV-VDKVIAVEIDPNLAARLPVTVADRAPELADRLTVVGADAMRVKPSEI--PGEPTALV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L +  S     P   +  ++ Q EV +R+ A   S  YG  SV   +  
Sbjct: 136 ANLPYNVAVPVLLHLFSE---LPSLRTALVMVQAEVADRLAASPGSKIYGVPSVKANFFG 192

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLR 238
                  +   VF+P PKV S ++    +  P           +  +   AF +RRKTLR
Sbjct: 193 AVRRAGAVGRAVFWPVPKVESGLVRIDRYAEPPWPVDDAHRRRVFAVIDAAFAQRRKTLR 252

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
            +L    G     E  L +AGI  + R E L    F R+ 
Sbjct: 253 AALGGWAGSPAEAERRLLEAGIAPSARGETLDAAAFVRLA 292


>gi|313884585|ref|ZP_07818346.1| dimethyladenosine transferase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620369|gb|EFR31797.1| dimethyladenosine transferase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 296

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 142/287 (49%), Gaps = 22/287 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
                 I+ +Y I  KK +GQNFL++ NIL K+  ++      TVIEIG G G LT+ L 
Sbjct: 10  PTRTAQIMKYYDIAMKKSLGQNFLIEPNILDKMVAAADIDSDTTVIEIGPGIGALTEFLA 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRII 122
            L A++V+  E D +F  IL++  + + N +++I  D LKVDF+            + ++
Sbjct: 70  -LSAKQVLAFEIDARFVSILENTLAAYDN-VKVIHQDILKVDFQAPEYASLKDLDRLVVV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T ++ + I +      ++ L ++ QKEV ER+TAQ  +  Y  L++    + 
Sbjct: 128 ANLPYYITTPIIMHLIDSHLP---FDRLVMMMQKEVAERMTAQVGTKAYNSLTIAIQLQM 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +A + F +  +VF P P V S V+       P      L   +   Q AF  RRKTL  +
Sbjct: 185 QARLDFIVPKNVFIPKPNVDSAVLVLERLATPRLDLADLSDFQNFVQAAFVYRRKTLWNN 244

Query: 241 LKRLGG-----------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            K               E +  QA ++   R E+LS+E+F ++    
Sbjct: 245 YKNAMSTNLADLSADQWEAIFDQAELDRQRRGESLSLEEFGQLYQAY 291


>gi|312128457|ref|YP_003993331.1| dimethyladenosine transferase [Caldicellulosiruptor hydrothermalis
           108]
 gi|311778476|gb|ADQ07962.1| dimethyladenosine transferase [Caldicellulosiruptor hydrothermalis
           108]
          Length = 282

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 150/284 (52%), Gaps = 13/284 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        L ++L  Y + P K +GQNFL+D N+++KI       +G  VIEIGAGPG 
Sbjct: 1   MNAAITKSELLSLLEKYGLSPNKKLGQNFLVDENVVRKII-LFSQTEGKEVIEIGAGPGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  L    A+KV+ +E D++   +LKD+     N ++I+  D L+++ +   N ++ + 
Sbjct: 60  LTVYLAKT-AQKVVAVEIDKKILNVLKDVCQNLSN-VQIVNSDFLELNVKNLTN-NNKVY 116

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ NLPY + +++LF          + E  T++ QKEV +R+ A+  +  YG L+V   +
Sbjct: 117 VVGNLPYYVTSQILFKLFKERK---YIEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMNF 173

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +    F +S +VF+P P+V S V+     +       +   KI    F  RRKT+  +
Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSAVLRARFKIEKPNVDEKKFFKIVHACFSTRRKTILNA 233

Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L           + ++H AG++ NLRAE+LS++++ R+     +
Sbjct: 234 LSNQLDIAKDDLKMIIHMAGLDENLRAEDLSLDNYIRLYQCFEE 277


>gi|150024182|ref|YP_001295008.1| dimethyladenosine transferase [Flavobacterium psychrophilum
           JIP02/86]
 gi|166221664|sp|A6GVR5|RSMA_FLAPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|149770723|emb|CAL42187.1| Dimethyladenosine transferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 259

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 88/260 (33%), Positives = 129/260 (49%), Gaps = 9/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D +I K IA++        V+EIG G G LT+ LL        VIE 
Sbjct: 4   VKAKKHLGQHFLKDESIAKDIADTLNLEGYDNVLEIGPGMGVLTKYLLAKEV-TTYVIEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L     +  ++  II  D LK +  + F       II N PYNI T+++F  +
Sbjct: 63  DTESVTYLDQNYPKLKDK--IISKDFLKYNINEIFE-GKQFAIIGNFPYNISTQIVFRAL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P +  +   FQKEV +RI  +K +  YG LSVL      A  +F +   VF P 
Sbjct: 120 EYRNQIPEFAGM---FQKEVAQRICEKKGTKAYGILSVLVQAFYDAEYLFTVDETVFIPP 176

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S V+      +  +PC  +    + + AF +RRKTLR SLK L   ++L +  +  
Sbjct: 177 PKVKSGVLRLRRKKDYSLPCGEKLFFTVVKTAFQQRRKTLRNSLKTLNLSDILREDEV-F 235

Query: 258 NLRAENLSIEDFCRITNILT 277
           NLR E L ++ F  +T  + 
Sbjct: 236 NLRPEQLDVQQFIELTKKIE 255


>gi|222056012|ref|YP_002538374.1| dimethyladenosine transferase [Geobacter sp. FRC-32]
 gi|221565301|gb|ACM21273.1| dimethyladenosine transferase [Geobacter sp. FRC-32]
          Length = 275

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 143/267 (53%), Gaps = 15/267 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI  KK MGQNFL+D N+L +I E+        V+EIG G G LT +L+   A +V+ +E
Sbjct: 3   KIRAKKSMGQNFLVDGNVLSRIVEAVVLEPSDRVLEIGPGRGALTSLLVKR-AEQVLAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135
            D+Q  P+L+   S   N +E IQ D LK++  +      +   ++ ANLPYNI ++++F
Sbjct: 62  LDRQLVPLLEKEFSGADN-VEFIQGDILKIELPEVLGSRWNGRWKVAANLPYNISSQVIF 120

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            ++   +    + SL L+ QKEVG+R+ A   +  YG LSV        + +  + P  F
Sbjct: 121 KFLDNVS---LFSSLILMLQKEVGDRLIASPGTKEYGILSVFCNLHFNISRVLIVKPGSF 177

Query: 196 FPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----- 248
            P PKV S V+ F+P   P          +++ + +F +RRKTL   L+     +     
Sbjct: 178 RPIPKVDSVVLKFVPLAAPRQDVGDETLFRQVVKASFSQRRKTLANCLRSALIADNDDLN 237

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITN 274
            +L QAGI+   R E L++E++ ++T 
Sbjct: 238 LILSQAGIDGGRRGETLTLEEYAQLTR 264


>gi|282880957|ref|ZP_06289648.1| dimethyladenosine transferase [Prevotella timonensis CRIS 5C-B1]
 gi|281305180|gb|EFA97249.1| dimethyladenosine transferase [Prevotella timonensis CRIS 5C-B1]
          Length = 270

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 131/263 (49%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DLNI K+IA++  +   I V+E+G G G +TQ L+    R++  +E 
Sbjct: 4   VRPKKNLGQHFLTDLNIAKRIADTVDACPDIPVLEVGPGMGVMTQYLVE-KPREIKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L     +      II  D L++D +K F    P  +  N PY+I +++ F  +
Sbjct: 63  DRESVAFLHTHFPKLQGN--IIGQDFLRMDLQKVFE-GRPFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  RI ++     YG LSVL         +F +  +VF P 
Sbjct: 120 ENKELIP---CCTGMIQREVALRIASEPGHKAYGILSVLIQAWYDVEYLFTVDENVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---AG 254
           PKV S VI    +    + C  +  K++ +  F +RRK LR SL++L   N       AG
Sbjct: 177 PKVKSAVIRMTRNATTDLGCNEQLFKRLVKAVFNQRRKMLRVSLRQLFTGNNASAEFYAG 236

Query: 255 IETNLRAENLSIEDFCRITNILT 277
               +R E LSI+ F  +TN + 
Sbjct: 237 ELMTMRPEQLSIQQFVDLTNRVE 259


>gi|288924741|ref|ZP_06418678.1| dimethyladenosine transferase [Prevotella buccae D17]
 gi|288338528|gb|EFC76877.1| dimethyladenosine transferase [Prevotella buccae D17]
          Length = 269

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 131/264 (49%), Gaps = 13/264 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DLNI ++IA++  +  G+ V+EIG G G LTQ L+T   R+V  +E 
Sbjct: 4   VKPKKNLGQHFLTDLNIARRIADTVDACPGLPVLEIGPGMGVLTQYLVT-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L +       R  II +D L++D    F    P  +  N PY+I +++ F  +
Sbjct: 63  DRESVAYLHETFPTL--RDNIIGEDFLRMDLNTVFG-GRPFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ ++  +  YG LSVL         +F +   VF P 
Sbjct: 120 DNRELIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYDVEYLFTVDEDVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253
           PKV S VI    + +  + C     K++ +  F +RRK LR SLK+L            A
Sbjct: 177 PKVKSAVIRMTRNGVTDLGCDERLFKRLVKAVFNQRRKMLRVSLKQLFAGAQPSGEFFTA 236

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
            +    R E L+I  F  +TN++ 
Sbjct: 237 EV-MTRRPEQLTIAQFVELTNVVE 259


>gi|225016807|ref|ZP_03705999.1| hypothetical protein CLOSTMETH_00719 [Clostridium methylpentosum
           DSM 5476]
 gi|224950475|gb|EEG31684.1| hypothetical protein CLOSTMETH_00719 [Clostridium methylpentosum
           DSM 5476]
          Length = 290

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 138/287 (48%), Gaps = 16/287 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    +K IL+ +     K +GQNFL++  I  KIAE  G+  G  VIE+G G G 
Sbjct: 1   MQNLSNISVIKEILNRHGFTFSKSLGQNFLINPGICPKIAELGGARPGGGVIEVGTGIGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---S 117
           LTQ L    A KV+ +E D +  P+L +  ++  N ++I+  D LKVD +          
Sbjct: 61  LTQELAKR-ADKVVAVEIDSRLLPVLDETLAEFDN-VKIVNQDILKVDLKLLIAEEFGNM 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P+ + ANLPY I + +L   +         ES+T + QKE G RI A+  +   G +S+ 
Sbjct: 119 PVTVCANLPYYITSPILMRLLEERLP---IESVTAMVQKEAGVRICAEPGTREVGAVSLA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             + +   ++F++S   F P+P V S V+               +   ++ + AF +RRK
Sbjct: 176 VRYFSDPKILFNVSRGSFLPAPNVDSCVVRLDVRGETPRGVADEKFFFQLVRAAFSQRRK 235

Query: 236 TLRQ------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL         + + G    L  + I+   RAE L + +F  ++N L
Sbjct: 236 TLVNPVSSALGISKDGVRQALLDSRIKPTARAEELKLYEFIELSNYL 282


>gi|157827650|ref|YP_001496714.1| dimethyladenosine transferase [Rickettsia bellii OSU 85-389]
 gi|166221696|sp|A8GXS7|RSMA_RICB8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157802954|gb|ABV79677.1| dimethyladenosine transferase [Rickettsia bellii OSU 85-389]
          Length = 268

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 101/272 (37%), Positives = 151/272 (55%), Gaps = 9/272 (3%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + ++I P K  GQNF+ D ++  KI  +SG  +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHAASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSILH 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              + + VIE D++  P+L +I   HPN L II+ DALK+        ++ I II+NLPY
Sbjct: 63  KNPKLLTVIETDERCIPLLNEIKQYHPN-LNIIKQDALKLKLSDL--NTNKITIISNLPY 119

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +IGT L+  W+   +      S+TL+ QKEV ERI A+ ++  YGRLSV+          
Sbjct: 120 HIGTELVIRWLKESS---LVASMTLMLQKEVVERICAKPSTKAYGRLSVICSLIATVEKC 176

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246
           FD++P  F+P PKV S ++   P  N     L   ++ IT+ AF  RRK ++ SLK L  
Sbjct: 177 FDVAPTAFYPPPKVYSAIVKLTPLENIPNSDLISKVELITKMAFAGRRKMIKSSLKNLAP 236

Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
               LL +  I  N RAENL+  D+  + +++
Sbjct: 237 NISELLAKLNISNNCRAENLTPNDYLSLASLI 268


>gi|197101331|ref|NP_001126887.1| dimethyladenosine transferase 1, mitochondrial [Pongo abelii]
 gi|75054716|sp|Q5R4V9|TFB1M_PONAB RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|55733044|emb|CAH93207.1| hypothetical protein [Pongo abelii]
          Length = 343

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 140/299 (46%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLLRVQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNADVAELLVVEKDTRFVPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   +            +TL FQKEV ER+ A   S   
Sbjct: 134 PDVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + L+ L  E         LL  A ++  LR    SI  F  + ++     D
Sbjct: 254 QFRRKYCHRGLRMLFPEAQRLESTGRLLELADVDPTLRPCQPSISHFKSLCDVYRKMCD 312


>gi|281420569|ref|ZP_06251568.1| dimethyladenosine transferase [Prevotella copri DSM 18205]
 gi|281405342|gb|EFB36022.1| dimethyladenosine transferase [Prevotella copri DSM 18205]
          Length = 270

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 129/265 (48%), Gaps = 13/265 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DLNI K+IA++  +   I V+EIG G G LTQ L+    R V  +E 
Sbjct: 4   VKPKKNLGQHFLTDLNIAKRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPRVVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +      +   II +D L++D  + F+      +  N PY+I +++ F  +
Sbjct: 63  DSESVAYLHENFPTLKDN--IIGEDFLRMDLNQIFD-GKQFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ ++  +  YG LSVL         +F +  +VF P 
Sbjct: 120 DYKDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLIQAWYDVEYLFTVDENVFNPP 176

Query: 199 PKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253
           PKV S VI      +  + C  +  K++ +  F +RRK LR SLK++             
Sbjct: 177 PKVKSAVIRMTRNKVTDLGCDEKLFKRLVKTVFNQRRKMLRVSLKQMFPGVTPREEFFTT 236

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
            I    R E L+I+ F  +TN + +
Sbjct: 237 DI-MTKRPEQLTIQQFVELTNYVGE 260


>gi|33603074|ref|NP_890634.1| dimethyladenosine transferase [Bordetella bronchiseptica RB50]
 gi|62900581|sp|Q7WG20|RSMA_BORBR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33568705|emb|CAE34463.1| dimethyladenosine transferase [Bordetella bronchiseptica RB50]
          Length = 265

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQ+FL D ++++ I  + G      V+EIG G   LT+ LL      +  +E 
Sbjct: 4   HQARKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDR-IDHLTAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L+        RL +++ DAL VDF +F      +R++ NLPYNI + LLF+ +
Sbjct: 63  DRDLAARLRRQYPA--ERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLM 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            A            + Q+EV +R+ A+  S  Y RLSV+   R +   +FD++P  F P 
Sbjct: 118 GAAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEKLFDVAPEAFDPP 174

Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P+V S V+   P       P    + + +   AF +RRK LR+ L          + GI 
Sbjct: 175 PRVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLGDWAALTPWDELGIA 234

Query: 257 TNLRAENLSIEDFC 270
              RAE + +  F 
Sbjct: 235 PTARAEEVGVAQFI 248


>gi|150009182|ref|YP_001303925.1| dimethyladenosine transferase [Parabacteroides distasonis ATCC
           8503]
 gi|166221684|sp|A6LF39|RSMA_PARD8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|149937606|gb|ABR44303.1| dimethyladenosine transferase [Parabacteroides distasonis ATCC
           8503]
          Length = 266

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 90/256 (35%), Positives = 129/256 (50%), Gaps = 9/256 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL I ++IA++  +   + V+EIG G G LTQ LL  G   + V+E 
Sbjct: 4   VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L         R  II +D LK+D  K F       +I N PYNI +++ F  +
Sbjct: 63  DMESVDYLNQNFPDLKGR--IIAEDFLKLDLSKLF--PGQFCVIGNYPYNISSQIFFKVL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     + + QKEV ER+ A   S  YG LSVL         +F +S  VF P 
Sbjct: 119 DYKDQIP---CCSGMLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVSEKVFDPP 175

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S V+    +    + C  +  K + + +F +RRKTLR S+K L G++    A    
Sbjct: 176 PKVKSAVLKMTRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDYALPIF 235

Query: 258 NLRAENLSIEDFCRIT 273
           + R E LS+E F  +T
Sbjct: 236 DKRPEQLSMEQFVELT 251


>gi|169642197|gb|AAI60475.1| tfb1m protein [Xenopus (Silurana) tropicalis]
          Length = 346

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 146/299 (48%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++  I+  + +  +K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  G  +++V+EKD +F P LK ++     +++I+  D L    ++ F         +  
Sbjct: 74  LNAGVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWDDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   AD   PF      +TL FQKEV ER+TA  +S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLEQLADRTGPFTYGRTQMTLTFQKEVAERLTASTSSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++  +       F I    F P P+V   V+HF P + P I    + ++K+ +  F
Sbjct: 194 SRLSIMAQYLCNVKNCFTIPGRAFVPKPEVDVGVVHFTPFIQPKIEQPFKVVEKVVRSVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK     +  L  E         +L  A ++  LR   L++  F ++ N+  +  D
Sbjct: 254 QFRRKYCHHGVSILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312


>gi|302345754|ref|YP_003814107.1| dimethyladenosine transferase [Prevotella melaninogenica ATCC
           25845]
 gi|302150103|gb|ADK96365.1| dimethyladenosine transferase [Prevotella melaninogenica ATCC
           25845]
          Length = 267

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/266 (31%), Positives = 133/266 (50%), Gaps = 13/266 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL+I ++IA++  +   I V+EIG G G LTQ L+    R+V  +E 
Sbjct: 4   VKPKKNLGQHFLTDLSIARQIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +   +   R  I+  D L++D  + F+   P  +  N PY+I +++ F  +
Sbjct: 63  DSESVAFLYEKFPKL--RENILGQDFLRMDLNEVFD-GRPFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV +R+ A   S  YG LSVL         +F +  +VF P 
Sbjct: 120 EYKDLIP---CCTGMIQREVAQRMAAGPGSKTYGILSVLMQAWYNVEYLFTVDENVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253
           PKV S VI    +    I C     K++ +  F +RRK LR SL+++       +  ++ 
Sbjct: 177 PKVKSAVIRMTRNEVTDIGCDQVLFKRVVKTVFNQRRKMLRVSLRQIFNAVKPTDGFYEQ 236

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
            I    R E LSI  F  +TN++ + 
Sbjct: 237 DI-MTKRPEQLSIAQFVELTNMVDEQ 261


>gi|254774035|ref|ZP_05215551.1| dimethyladenosine transferase [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 318

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 19/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +    +  P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL
Sbjct: 19  RTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGSLTLALL 78

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L    ++H +    RL ++  D L +  ++      P  ++
Sbjct: 79  DRGAH-VTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDELAE--PPTAVV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + ++     P   ++T++ Q EV ER+ A+     YG  SV   +  
Sbjct: 136 ANLPYNVAVPALLHLLAE---FPSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFG 192

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC---LESLKKITQEAFGKRRKTLR 238
           +      +SP VF+P P+V S ++    +   P P        + ++   AFG+RRKT R
Sbjct: 193 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPIDPAFRRQVFELVDIAFGQRRKTCR 252

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            +     G      + L  A I+   R E LSI+DF R+     D 
Sbjct: 253 NAFVDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298


>gi|226365142|ref|YP_002782925.1| dimethyladenosine transferase [Rhodococcus opacus B4]
 gi|254807880|sp|C1AXY5|RSMA_RHOOB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226243632|dbj|BAH53980.1| dimethyladenosine transferase [Rhodococcus opacus B4]
          Length = 296

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 127/280 (45%), Gaps = 19/280 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +   + + P K +GQNF+ D N +++I  ++G     TV+E+G G G+LT  LL
Sbjct: 19  PAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVATAGVGREDTVLEVGPGLGSLTLALL 78

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            +   +VI +E D      L     D +    +RL ++  DA++V   +      P  ++
Sbjct: 79  DV-VDRVIAVEIDPNLAARLPVTVADRAPDLADRLTVVGADAMRVKPSEI--PGEPTALV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L +  S     P   +  ++ Q EV +R+ A   S  YG  SV   +  
Sbjct: 136 ANLPYNVAVPVLLHLFSE---LPSLRTALVMVQAEVADRLAASPGSKIYGVPSVKANFFG 192

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLR 238
                  +   VF+P PKV S ++    +  P           +  +   AF +RRKTLR
Sbjct: 193 AVRRAGAVGRAVFWPVPKVESGLVRIDRYAEPPWPVDDENRRRVFAVIDAAFAQRRKTLR 252

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
            +L    G     E  L +AGI  + R E L    F R+ 
Sbjct: 253 AALGGWAGSPAEAERRLLEAGIPPSSRGETLDAAAFVRLA 292


>gi|283782577|ref|YP_003373331.1| dimethyladenosine transferase [Gardnerella vaginalis 409-05]
 gi|283441107|gb|ADB13573.1| dimethyladenosine transferase [Gardnerella vaginalis 409-05]
          Length = 302

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 131/282 (46%), Gaps = 12/282 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   ++KI  ++    G  V+E+G G G+LT  +L
Sbjct: 24  AADIRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAEVKSGDIVMEVGPGLGSLTLAIL 83

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIR 120
             GA ++  +E D      L    ++   Q   +  +I  DAL V+ +    I  +    
Sbjct: 84  QTGA-QLTAVEIDPPLARRLPHTVEEFMPQSMQKFNVILKDALTVNADDVPQIAQAKQFT 142

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T ++   +   +    +  +    QKEV +R+ AQ  +  YG  SV   W
Sbjct: 143 LVANLPYNVATPIILTLLEKFSNLQNFLVMV---QKEVADRLCAQPGNKVYGTPSVKLAW 199

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLR 238
             KA     I  +VF+PSP V S ++ F  +        E   +      AF +RRKTL 
Sbjct: 200 YGKAQRAGLIGRNVFWPSPNVDSALVSFTRNCTGKGDNNEREGVFAFIDAAFQQRRKTLH 259

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +LK    E     +GI+   R E L+ ++F  +     D +
Sbjct: 260 AALKNQVPEEAYKNSGIDPTRRGETLTCDEFIALYRACKDCK 301


>gi|327313931|ref|YP_004329368.1| dimethyladenosine transferase [Prevotella denticola F0289]
 gi|326944358|gb|AEA20243.1| dimethyladenosine transferase [Prevotella denticola F0289]
          Length = 279

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 13/270 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL+I  +IA++  +   I V+EIG G G LTQ L+    R+V  +E 
Sbjct: 4   VKPKKNLGQHFLTDLSIAHRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +   +   R  II +D L++D  + F+      +  N PY+I +++ F  +
Sbjct: 63  DAESVAYLYEKFPRL--RENIIGEDFLRMDLSQIFD-GRQFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ A   S  YG LSVL         +F +  +VF P 
Sbjct: 120 DYKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLMQAWYDVEYLFTVDENVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253
           PKV S VI    + +  + C     K++ +  F +RRK LR SL++L       +  ++ 
Sbjct: 177 PKVKSAVIRMTRNDVTDLGCDERLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPADGFYEQ 236

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283
            I    R E LSI     +TN++ +  ++A
Sbjct: 237 DI-MTKRPEQLSIPQLVGLTNMVAEQLELA 265


>gi|166363194|ref|YP_001655467.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843]
 gi|166085567|dbj|BAG00275.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843]
          Length = 268

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 132/266 (49%), Gaps = 12/266 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI P+K  GQ++L D +IL +I  ++       V+EIG G G LT+ LL  GA+ V+ +E
Sbjct: 2   KIQPRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLD-GAQLVVAVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+  + IL     Q  N   +I  D L +  E+   ++   +++AN+PYNI   +L   
Sbjct: 61  IDRDLWTILNKKFGQQDN-FHLIPGDFLSLKPEQLPPVN---KVVANIPYNITGPILEKL 116

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +   P  P ++S+TLL QKEV ER+ A  ++  Y  LSV   +      + D+    F
Sbjct: 117 LGSIAHPFTPPYQSITLLVQKEVAERLVAVPSTKAYSALSVRIQYLADCQWICDVPWRAF 176

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGEN----LL 250
            P P+V S VI  +P + P      +    +    F  RRK LR +LK     +    +L
Sbjct: 177 SPPPRVDSAVIQLLPRVLPNNVSNAAFLSTLISWGFANRRKMLRNNLKNCLDSDRLSQIL 236

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
            Q  I    RAE+LS+  +  +   L
Sbjct: 237 TQLEINPLARAEDLSLSQWIDLAEKL 262


>gi|326319524|ref|YP_004237196.1| dimethyladenosine transferase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323376360|gb|ADX48629.1| dimethyladenosine transferase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 253

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/262 (33%), Positives = 128/262 (48%), Gaps = 12/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+    R + V+E
Sbjct: 2   KHIPRKRFGQHFLADQAIIDAIVRAIAPAPGQPMVEIGPGLAALTQPLVERLGR-LTVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135
            D+     L+        +L++I+ D LKVDF        +  IRI+ NLPYNI T +LF
Sbjct: 61  LDRDLAQRLRGH-----GQLDVIESDVLKVDFTAVAANLGTPRIRIVGNLPYNISTPILF 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +         E    + QKEV +R+ AQ  +  YGRLSV+  WR     +  + P  F
Sbjct: 116 HLLE---HVDVVEDQHFMLQKEVIDRMVAQPATSDYGRLSVMLQWRYAMEDVLFVPPESF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P P+V S V+  +PH  P P     L+++ Q AF +RRK LR +L R            
Sbjct: 173 DPPPRVDSAVVRMVPHATPAPVAPRLLEELVQVAFSQRRKLLRHTLGRWLEARQFTGT-F 231

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +T  RAE + + D+  +     
Sbjct: 232 DTQRRAEEVPVADYVALAQACA 253


>gi|154494071|ref|ZP_02033391.1| hypothetical protein PARMER_03416 [Parabacteroides merdae ATCC
           43184]
 gi|154086331|gb|EDN85376.1| hypothetical protein PARMER_03416 [Parabacteroides merdae ATCC
           43184]
          Length = 290

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/256 (35%), Positives = 132/256 (51%), Gaps = 9/256 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL I ++IA++      + V+EIG G G LTQ LL  G   + V+E 
Sbjct: 33  VKPKKALGQHFLKDLQIAERIADTLSDYKQLPVLEIGPGMGVLTQFLLEKG-HDLTVVEL 91

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L+        +  I+ +D L++D  K F       +I N PYNI +++ F  +
Sbjct: 92  DMESVDYLEQNFPVLEGK--ILAEDFLRLDLGKLF--PDQFCVIGNYPYNISSQIFFKVL 147

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     + + QKEV ER+ A   S  YG LSVL     +   +F +S +VF P 
Sbjct: 148 DYKEHIP---CCSGMIQKEVAERLAAGPGSKTYGILSVLLQAWYEVEYLFTVSENVFDPP 204

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI  + +      C E L K + + +F +RRKTLR S+K L G++    +    
Sbjct: 205 PKVKSAVIRMVRNDRKSLGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDYSLPIF 264

Query: 258 NLRAENLSIEDFCRIT 273
           N R E LS+E F  +T
Sbjct: 265 NKRPEQLSVEQFVELT 280


>gi|331694705|ref|YP_004330944.1| ribosomal RNA small subunit methyltransferase A [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949394|gb|AEA23091.1| Ribosomal RNA small subunit methyltransferase A [Pseudonocardia
           dioxanivorans CB1190]
          Length = 284

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 123/276 (44%), Gaps = 14/276 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     I P K +GQNF+ D N +++I +++       V+E+G G G+LT  LL
Sbjct: 9   PAEVRGLAERLGIRPTKKLGQNFVHDPNTVRRIVKAAELGSDDVVVEVGPGLGSLTLALL 68

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A  V  +E D      L     + +    +RL +   DA++V   +      P  I+
Sbjct: 69  PAVA-AVHAVEIDPVLAAQLPATVAEFAPGLADRLTVTTADAVRVRAAELAG-PVPTAIV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+G  +L + ++     P      ++ Q EV +R+ A   S  YG  S    W  
Sbjct: 127 ANLPYNVGVPVLLHLLAE---LPGIRRGLVMVQAEVADRLAAPPGSKTYGVPSAKLAWFA 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            A     +   VF+P P V S ++ F     P       +  +   AF +RRK LR +L 
Sbjct: 184 DARRAGPVPRAVFWPVPNVDSGLLAFTCRPAPSDVPRADVFAVVDAAFAQRRKALRSALA 243

Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
              G     E  L  AGI+   RAE L I DF RI 
Sbjct: 244 GWAGSPPAAEQALTTAGIDPLTRAERLGITDFARIA 279


>gi|78189160|ref|YP_379498.1| dimethyladenosine transferase [Chlorobium chlorochromatii CaD3]
 gi|119365013|sp|Q3ARC0|RSMA_CHLCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78171359|gb|ABB28455.1| dimethyladenosine transferase [Chlorobium chlorochromatii CaD3]
          Length = 263

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/267 (31%), Positives = 137/267 (51%), Gaps = 10/267 (3%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H ++  KK +GQNFL D NI +K    SG+     V+EIG G G LT+ L+      + 
Sbjct: 7   KHTQVAAKKKLGQNFLTDRNITRKTVLLSGAKPDDQVVEIGPGFGALTRELVEEC-HNLT 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIEKD      +++   ++P ++++I+ D L ++F        P++I+ N+PY+I + +L
Sbjct: 66  VIEKDPTLATFIRN---EYP-QIKVIEGDVLTINFSAMAQAGKPLQILGNIPYSITSPIL 121

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +        + S TL+ Q EV  R+ A+  +  YG L+V      K   +F +S  V
Sbjct: 122 FHLLEHRRA---FRSATLMMQHEVALRLAAKPATKEYGILAVQMQAFCKVEYLFKVSRKV 178

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P PKV S VI   PH        +  ++  + AF +RRKTL  +LK      L+    
Sbjct: 179 FKPQPKVESAVIKLTPHATDPALDADGFRRFVRIAFHQRRKTLLNNLKESYNLELVDSNK 238

Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281
           +   LRAE LSIE+   + +++    +
Sbjct: 239 L--QLRAEALSIEELLELFSLIKTKSE 263


>gi|288941310|ref|YP_003443550.1| dimethyladenosine transferase [Allochromatium vinosum DSM 180]
 gi|288896682|gb|ADC62518.1| dimethyladenosine transferase [Allochromatium vinosum DSM 180]
          Length = 263

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/259 (35%), Positives = 130/259 (50%), Gaps = 7/259 (2%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  ++ +I  +  +  G  ++EIG G G +TQ LLT  A  + VIE 
Sbjct: 3   HRARKRFGQNFLHDPLVIDRIHAAIDARPGERLVEIGPGQGAITQGLLTR-AGALDVIEL 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L+         L I   DAL  D     +    +R++ NLPYNI T LLF+++
Sbjct: 62  DRDLIEPLRQRLGGL-GELRIHNADALDFDLRTLADSEGTLRLVGNLPYNISTPLLFHFL 120

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + + L+ QKEV ERI A+     YGRLSV+   R  A  +F I P  F P+
Sbjct: 121 DQ---LDALQDMHLMLQKEVVERIAAEPGDKTYGRLSVMIQSRCAAASLFRIGPGAFKPA 177

Query: 199 PKVTSTVIHFIPHLNPI-PCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S  +   P      P     L  +I   AFG+RRKTLR SL  +   +++  AGI+
Sbjct: 178 PKVESAFLRLRPLRPLPHPIDDPRLHGRIVAAAFGQRRKTLRNSLSGVVDLDIIEAAGID 237

Query: 257 TNLRAENLSIEDFCRITNI 275
              RAE L +  + R+ N+
Sbjct: 238 PKRRAEELDVASYTRLANL 256


>gi|237756245|ref|ZP_04584806.1| dimethyladenosine transferase [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691603|gb|EEP60650.1| dimethyladenosine transferase [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 258

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 134/262 (51%), Gaps = 8/262 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +I PKK++GQ+FL+  N+++KI +         ++EIG G G LT+ +L    + +  +E
Sbjct: 3   RIKPKKHLGQHFLISKNVIEKIVDEIDISQEDIIVEIGPGTGALTEEILLRNPKILYAVE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D   +P+L++  S++ N  ++I+ D   V+  +  +    I+++ NLPYN+ + ++   
Sbjct: 63  IDTTVYPVLEEKFSKYSN-FKLIKSDFFDVNLYELISDKEKIKLVGNLPYNVSSLMI--- 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         E    + QKEV E++ A+  +  Y  LSV          +  +    F P
Sbjct: 119 IDCGFKLDILEFCVFMIQKEVAEKLIAKPKTKDYTFLSVFIQTFFDVKYIMSVPARFFNP 178

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            PKVTS V+   P  N +   ++  K      F  RRK +    K    E +L++AG+  
Sbjct: 179 PPKVTSAVVKLTPKQNIVINNVKKYKNFVSHLFQNRRKMI----KSKIEEGMLNKAGVSP 234

Query: 258 NLRAENLSIEDFCRITNILTDN 279
           NLRAE LS+EDF RI  ++ ++
Sbjct: 235 NLRAEELSVEDFIRIFEVVEND 256


>gi|295675488|ref|YP_003604012.1| dimethyladenosine transferase [Burkholderia sp. CCGE1002]
 gi|295435331|gb|ADG14501.1| dimethyladenosine transferase [Burkholderia sp. CCGE1002]
          Length = 280

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 13/265 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--- 71
            H   + +K  GQNFL+D+ ++  I +      G  ++EIG G G LT+ L+   A    
Sbjct: 9   RHQGHLARKRFGQNFLVDMGVIDSIVDVIRPKRGERMVEIGPGLGALTEPLIERLATPES 68

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP--IRIIANLPYNI 129
            +  +E D+     LK    +    LE+   DAL+ DF           +RI+ NLPYNI
Sbjct: 69  PLHAVELDRDLIGRLKTKFGEL---LELHSGDALEFDFGSLAAPGDKASLRIVGNLPYNI 125

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+     T+         + Q EV ER+ A+  +  + RLSV+  +R       D
Sbjct: 126 SSPLLFHL---ATFADRVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVIDKQLD 182

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L ++   AF +RRK LR +L  L   
Sbjct: 183 VPPESFQPPPKVDSAIVRMIPYERHELPMVDENVLGEVVTAAFSQRRKMLRNTLAALRDT 242

Query: 248 NLLHQAGIETNLRAENLSIEDFCRI 272
                 G +   RAE++ + ++  +
Sbjct: 243 VDFDALGFDLQRRAEDVPVAEYVSV 267


>gi|303234855|ref|ZP_07321480.1| dimethyladenosine transferase [Finegoldia magna BVS033A4]
 gi|302493973|gb|EFL53754.1| dimethyladenosine transferase [Finegoldia magna BVS033A4]
          Length = 283

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 142/285 (49%), Gaps = 15/285 (5%)

Query: 3   MNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M+ K H    +K IL  +     K +GQNFL+D N+++ I + S   +   VIEIG G G
Sbjct: 1   MSYKLHQPSYIKEILDKFGFKFSKALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            LT+ L+    + +  IE D +   +LK       N  +II +D LKVD  +  +     
Sbjct: 61  TLTERLVD-KCKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVDLNELNHEDKKF 118

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++ +      +    ES+T++ QKEV  R+ A   S  Y  LS+   
Sbjct: 119 KVVANLPYYITTPIIEHLF---NYRDIIESITVMVQKEVANRMVADVGSKDYASLSLFVK 175

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
             + A ++ +    VF P PKV S V++            E L+++ +  F KRRKT+  
Sbjct: 176 QNSDAKIILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILN 235

Query: 240 SLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           S             + +L + G++ NLRAENLS+ED+  I   L+
Sbjct: 236 SFTSGFVNVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280


>gi|225023033|ref|ZP_03712225.1| hypothetical protein CORMATOL_03081 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944256|gb|EEG25465.1| hypothetical protein CORMATOL_03081 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 302

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 15/278 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQM 64
              ++T+ S   I P K +GQNFL D N ++ I  ++   D     V+E+G G G+LT  
Sbjct: 22  PADIRTLASELDITPTKKLGQNFLHDPNTVRMIITTAQFTDVTNRHVLEVGPGLGSLTLG 81

Query: 65  LLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           L+T    KV  IE D +    L     + +  H ++L +   DAL V  +     + P  
Sbjct: 82  LVTAC-EKVTAIEIDPRLAARLPRTIAEFAPDHADQLTVSNRDALTVSPQDIDMSTPPTA 140

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+   +L + ++     P    + ++ Q EV +R+ A+  +  YG  SV   +
Sbjct: 141 LVANLPYNVSVPILLHLLAE---FPSIARVVVMVQAEVADRLAARPGTKIYGVPSVKAAF 197

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +      I  +VF+P+PK+ S ++             +++  +   AF +RRKTLR +
Sbjct: 198 YGQVRRAGTIGKNVFWPAPKIDSGLVSIDCTHPYSSSLRDTVFPLIDAAFLQRRKTLRAA 257

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           L  + G     E  L +A I+  LR E L I DF R+ 
Sbjct: 258 LSGVYGSASQAEEALRRAQIDPTLRGEKLDISDFIRLA 295


>gi|308376581|ref|ZP_07439351.2| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu008]
 gi|308377580|ref|ZP_07479724.2| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu009]
 gi|308350599|gb|EFP39450.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu008]
 gi|308355232|gb|EFP44083.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu009]
          Length = 320

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 19/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +       P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL
Sbjct: 19  RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALL 78

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L+   ++H     +RL ++  D L +  E     ++P  ++
Sbjct: 79  DRGA-TVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLA--AAPTAVV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + +      P    +T++ Q EV ER+ A+  S  YG  SV   +  
Sbjct: 136 ANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFG 192

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238
           +      +SP VF+P P+V S ++    +        ++ ++    +   AF +RRKT R
Sbjct: 193 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 252

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
            +  +  G      N L  A I+   R E LSI+DF R+
Sbjct: 253 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 291


>gi|317153209|ref|YP_004121257.1| dimethyladenosine transferase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943460|gb|ADU62511.1| dimethyladenosine transferase [Desulfovibrio aespoeensis Aspo-2]
          Length = 261

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/266 (31%), Positives = 128/266 (48%), Gaps = 12/266 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y    KK +GQNFL D NI ++I ++       T+IEIG G G LT  +      +  
Sbjct: 4   EAYHHKAKKSLGQNFLTDQNICRRIVDAIAPGPTDTIIEIGPGQGALTGFIAQAHPARFS 63

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           VIE D      L+     +P+ +E+I+ DAL+  +E   N     +I+ NLPYN+G++L+
Sbjct: 64  VIELDDGLADRLE---GAYPD-IEVIRADALRFPWESL-NAGERCKIVGNLPYNVGSKLI 118

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           ++ +S        +    + Q EV  R+TA+     YG L+           +F + P V
Sbjct: 119 WDIVSRVQ---TLDRAVFMVQHEVALRLTAEPGCKAYGGLTAWVRNFADTRYLFKVPPTV 175

Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLL 250
           F P PKV S V+ F+P      P   ++L ++ +  F KRRK L   LK L     EN  
Sbjct: 176 FRPQPKVDSAVVAFVPRPVGEWPRSPQALDRLIKMLFQKRRKQLSNILKPLWSQEIENWF 235

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
              GI    R E LS + F  ++ ++
Sbjct: 236 ASQGISPMARPETLSPQQFLELSALI 261


>gi|85859079|ref|YP_461281.1| dimethyladenosine transferase [Syntrophus aciditrophicus SB]
 gi|119365852|sp|Q2LSQ6|RSMA_SYNAS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|85722170|gb|ABC77113.1| dimethyladenosine transferase [Syntrophus aciditrophicus SB]
          Length = 280

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 144/280 (51%), Gaps = 17/280 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ IL ++ I P K +GQ FL D +++KKI E +   +  T++EIG+G G +T ++    
Sbjct: 4   VRQILRNHDIKPVKRLGQCFLADFSVMKKIVELAEIKEDETIVEIGSGLGLMTSLMAERA 63

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPY 127
           A  V  +E D +   +LK+   ++ N + +I  D LK DF      +    I+II N+PY
Sbjct: 64  A-WVHAVEIDGKLVSVLKERLKEYHN-VTVIHGDILKYDFLTALGENSVKKIKIIGNIPY 121

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I + +LF+ +          +  L+ QKEV +R+ A   +  YG  +VL G   + +  
Sbjct: 122 SISSPILFHILDHRKQ---ISTAVLMMQKEVADRLCAVPGTKAYGIPTVLFGLYARISRE 178

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
             ++P  F+P P+VTSTV+  +    P+          ++ + AF +RRKTL  ++K   
Sbjct: 179 LTVAPGCFYPKPEVTSTVVKMLIPEEPLYWVENDALFFRLVKAAFAQRRKTLLNNMKNAH 238

Query: 246 --------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                    ENLL   G    +RAE LSI+ F  + N L+
Sbjct: 239 WKDCDAGRIENLLRDMGAGEKIRAEELSIQQFAALCNSLS 278


>gi|261367577|ref|ZP_05980460.1| dimethyladenosine transferase [Subdoligranulum variabile DSM 15176]
 gi|282570364|gb|EFB75899.1| dimethyladenosine transferase [Subdoligranulum variabile DSM 15176]
          Length = 287

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 18/292 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       +++ + + Y     K  GQNF+++  I  +IAE++G   G  V+EIG G G 
Sbjct: 1   MPNLTDLSTIRDLCARYDFALSKGFGQNFIINPGICPRIAEAAGIGPGWGVLEIGPGIGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---S 117
           LT+ L    A KV+ +E D++  P+L +  + + N  +++  D LKVD +          
Sbjct: 61  LTEQLCKR-ADKVVSVEVDKRLPPLLAETMAGYDN-FKLVLQDVLKVDLKALLEEEFGTK 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P+ + ANLPY I + +L   +         +++T++ Q+E  +R+ A   +   G +S  
Sbjct: 119 PVAVCANLPYYITSPILMRLLEEKLP---IQNITVMVQREAAQRLCAAPGTREAGAISYA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP----IPCCLESLKKITQEAFGKR 233
             +  +  ++F + P  F+P+P VTS VI       P         ++   + + AF +R
Sbjct: 176 VAYYAQPKLLFTVQPGSFYPAPSVTSAVIRLDVRQQPPVDLPDGREKAYFALIRAAFSQR 235

Query: 234 RKTLRQS------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           RKT   +      L +      L  AG+E   R E L++  +  +   L ++
Sbjct: 236 RKTAANAIANGLKLPKAQVLEALRTAGLEERARPEQLTLRAYAALLTALHED 287


>gi|253799960|ref|YP_003032961.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN
           1435]
 gi|253321463|gb|ACT26066.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN
           1435]
          Length = 323

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 19/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +       P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL
Sbjct: 22  RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALL 81

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L+   ++H     +RL ++  D L +  E     ++P  ++
Sbjct: 82  DRGA-TVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLA--AAPTAVV 138

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + +      P    +T++ Q EV ER+ A+  S  YG  SV   +  
Sbjct: 139 ANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFG 195

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238
           +      +SP VF+P P+V S ++    +        ++ ++    +   AF +RRKT R
Sbjct: 196 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 255

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
            +  +  G      N L  A I+   R E LSI+DF R+
Sbjct: 256 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 294


>gi|326333241|ref|ZP_08199488.1| dimethyladenosine transferase [Nocardioidaceae bacterium Broad-1]
 gi|325948885|gb|EGD40978.1| dimethyladenosine transferase [Nocardioidaceae bacterium Broad-1]
          Length = 299

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 137/284 (48%), Gaps = 17/284 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++++ S   + P K  GQNF++D N +++I   SG      V+E+G G G+LT  +L
Sbjct: 12  PAEVRSLASELDLRPTKQRGQNFVIDANTVRRIVRESGVDASDVVVEVGPGLGSLTLAIL 71

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
             GAR V  IE D+     L     ++     +   +I+ DAL+VD         P  ++
Sbjct: 72  ETGAR-VTAIEIDEVLAERLPRTIEEYAPDQADAFSLIRADALRVDSVP---GPPPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +S     P      ++ Q EV +R+ A+  S  YG  SV   W  
Sbjct: 128 ANLPYNVSVPVLLHLMS---LLPSLRHGLVMVQAEVADRLAAKPGSKVYGVPSVKAAWYA 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
                  I  +VF+P+P V S ++++     P      E +  +   AF +RRK LR  L
Sbjct: 185 DVRRAGAIGRNVFWPAPNVDSGLVYWSHREPPSTEVSREEVFAVVDAAFAQRRKALRGVL 244

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           K L G     E  L  AGI+   R E+L+I DF RIT  L  ++
Sbjct: 245 KPLAGSADAAEKALVAAGIDPLARGESLTIADFVRITESLHADR 288


>gi|325853921|ref|ZP_08171437.1| dimethyladenosine transferase [Prevotella denticola CRIS 18C-A]
 gi|325484258|gb|EGC87188.1| dimethyladenosine transferase [Prevotella denticola CRIS 18C-A]
          Length = 274

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 13/270 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL+I  +IA++  +   I V+EIG G G LTQ L+    R+V  +E 
Sbjct: 4   VKPKKNLGQHFLTDLSIAHRIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +   +   R  II +D L++D  + F+      +  N PY+I +++ F  +
Sbjct: 63  DAESVAYLYEKFPRL--RENIIGEDFLRMDLSQIFD-GRQFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ A   S  YG LSVL         +F +  +VF P 
Sbjct: 120 DYKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLMQAWYDVEYLFTVDENVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253
           PKV S VI    + +  + C     K++ +  F +RRK LR SL++L       +  ++ 
Sbjct: 177 PKVKSAVIRMTRNDVTDLGCDERLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPTDGFYEQ 236

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQDIA 283
            I    R E LSI     +TN++ +  ++A
Sbjct: 237 DI-MTKRPEQLSIPQLVGLTNMVAEQLELA 265


>gi|282878182|ref|ZP_06286978.1| dimethyladenosine transferase [Prevotella buccalis ATCC 35310]
 gi|281299600|gb|EFA91973.1| dimethyladenosine transferase [Prevotella buccalis ATCC 35310]
          Length = 271

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 11/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL+I K+IA++  +   I ++EIG G G LTQ L+    R+V  +E 
Sbjct: 4   VKPKKNLGQHFLTDLSIAKRIADTVDACPSIPILEIGPGMGVLTQYLVE-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L++   +  +   II  D L++D  + F+      +  N PY+I +++ F  +
Sbjct: 63  DRESVAYLRENFPKLRDN--IIGQDFLRMDLHQVFD-GQQFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV +RI ++  +  YG LSVL         +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQREVAQRIASEPGNKAYGILSVLIQAWYHVEYLFTVDEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---AG 254
           PKV S VI    +  + + C     K++ +  F +RRK LR SL++L           AG
Sbjct: 177 PKVKSAVIRMTRNEVHDLGCDEMFFKRVVKTVFNQRRKMLRVSLRQLFPGEGASAEFYAG 236

Query: 255 IETNLRAENLSIEDFCRITNILT 277
                R E LS+  F  +TN + 
Sbjct: 237 ELMTKRPEQLSVAQFVALTNQVE 259


>gi|33594223|ref|NP_881867.1| dimethyladenosine transferase [Bordetella pertussis Tohama I]
 gi|62900576|sp|Q7VU11|RSMA_BORPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33564298|emb|CAE43596.1| dimethyladenosine transferase [Bordetella pertussis Tohama I]
 gi|332383637|gb|AEE68484.1| dimethyladenosine transferase [Bordetella pertussis CS]
          Length = 265

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQ+FL D ++++ I  + G      V+EIG G   LT+ LL      +  +E 
Sbjct: 4   HQARKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDR-IDHLTAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L+        RL +++ DAL VDF +F      +R++ NLPYNI + LLF+ +
Sbjct: 63  DRDLAARLRRQYPA--ERLTVVEADALTVDFAQF---GQGLRVVGNLPYNISSPLLFHLM 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            A            + Q+EV +R+ A+  S  Y RLSV+   R +   +FD++P  F P 
Sbjct: 118 GAAEQ---VRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEKLFDVAPEAFDPP 174

Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P+V S V+   P       P    + + +   AF +RRK LR+ L          + GI 
Sbjct: 175 PRVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLDDWAALTPWDELGIA 234

Query: 257 TNLRAENLSIEDFC 270
              RAE + +  F 
Sbjct: 235 PTARAEEVGVAQFI 248


>gi|53712071|ref|YP_098063.1| dimethyladenosine transferase [Bacteroides fragilis YCH46]
 gi|60680265|ref|YP_210409.1| dimethyladenosine transferase [Bacteroides fragilis NCTC 9343]
 gi|253563890|ref|ZP_04841347.1| dimethyladenosine transferase [Bacteroides sp. 3_2_5]
 gi|62900503|sp|Q64Y97|RSMA_BACFR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|81316665|sp|Q5LHC9|RSMA_BACFN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|52214936|dbj|BAD47529.1| dimethyladenosine transferase [Bacteroides fragilis YCH46]
 gi|60491699|emb|CAH06452.1| putative dimethyladenosine transferase [Bacteroides fragilis NCTC
           9343]
 gi|251947666|gb|EES87948.1| dimethyladenosine transferase [Bacteroides sp. 3_2_5]
          Length = 272

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVK-KERLVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++ ++ F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFD-GHPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     +   +F ++  VF P 
Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVNEQVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K+I +  F +RRKTLR S+K + G++         
Sbjct: 177 PKVKSAVIRMTRNETQELGCDPKLFKQIVKTTFNQRRKTLRNSIKPILGKDCPLTEDALF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+++F  +TN + 
Sbjct: 237 NKRPEQLSVQEFIHLTNQVE 256


>gi|325286669|ref|YP_004262459.1| Ribosomal RNA small subunit methyltransferase A [Cellulophaga
           lytica DSM 7489]
 gi|324322123|gb|ADY29588.1| Ribosomal RNA small subunit methyltransferase A [Cellulophaga
           lytica DSM 7489]
          Length = 286

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 134/269 (49%), Gaps = 14/269 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D  I ++IAE+        VIEIG G G LT+ +L      +I ++ 
Sbjct: 22  VKAKKHLGQHFLTDEAIAQQIAETLTHNGYTNVIEIGPGTGVLTKYILKHD-LNLIAMDL 80

Query: 79  DQQFFPIL-KDISSQHP------NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D +    L ++   +HP         ++++ D LK D    F       I  N PYNI T
Sbjct: 81  DTESIAYLNQNFLLEHPELLNRKGTFKVVEADFLKQDLTTIFGDEQ-FAISGNFPYNIST 139

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +++F  +      P +  +   FQKEV ERI +++ S  YG LSVLT     A  +F + 
Sbjct: 140 QIVFKTLEHKQQIPEFTGM---FQKEVAERICSKEGSKAYGILSVLTQAYYHAEYLFTVP 196

Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           P VF P PKV S V+      N  I    + L ++ +  F +RRKT+R SLK     + L
Sbjct: 197 PTVFNPPPKVDSGVLRLTRKENLDIGVDEKLLYRVVKAVFNQRRKTIRNSLKTFELSDNL 256

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
            +  I    R E L++EDF  +T  + ++
Sbjct: 257 KEDPI-FGKRPEQLAVEDFVALTKKIAND 284


>gi|54113937|gb|AAV29602.1| NT02FT1085 [synthetic construct]
          Length = 262

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 132/266 (49%), Gaps = 9/266 (3%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            Y    KK +GQNFL D NI++KI + +       V+EIG G G LT+ LL   +  V V
Sbjct: 2   QYMTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLL-SSSNNVSV 60

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLL 134
           +E D      L     ++     I   D LK D     N S   I++I NLPYNI + +L
Sbjct: 61  VEFDASVIDTLIANCQKY-GTPHIYNQDFLKFDISSLENSSNQKIKLIGNLPYNISSPIL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I              + QKEV ERI +  NS   GRLSV+  +    +M+  I P V
Sbjct: 120 FKVIKDSDK---IVDAHFMLQKEVVERIVSLPNSKSSGRLSVILQYHFDCSMILKIPPEV 176

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           F+P PKV S ++   P     +       ++I +++F +RRKTL  +LK +  E  +   
Sbjct: 177 FYPQPKVDSAILRLKPKNSKELLKNYNFFEEIVKQSFAQRRKTLHNNLKSILKERKIDPS 236

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
              ++TNLRAENLS+ DF  + N L 
Sbjct: 237 TLPVDTNLRAENLSVGDFVSLANFLR 262


>gi|221200091|ref|ZP_03573134.1| dimethyladenosine transferase [Burkholderia multivorans CGD2M]
 gi|221206756|ref|ZP_03579768.1| dimethyladenosine transferase [Burkholderia multivorans CGD2]
 gi|221173411|gb|EEE05846.1| dimethyladenosine transferase [Burkholderia multivorans CGD2]
 gi|221180330|gb|EEE12734.1| dimethyladenosine transferase [Burkholderia multivorans CGD2M]
          Length = 275

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 118/263 (44%), Gaps = 13/263 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---R 71
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT+ L+   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGALTEPLIARLATPET 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     LK         LE+   DAL  DF           +RI+ NLPYNI
Sbjct: 66  PLHAVELDRDLIARLKQRFGAL---LELHAGDALAFDFRSLAAPGDAPSLRIVGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IP+            L +I   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPYAPHELPDVDPVLLGEIVTAAFSQRRKMLRNTLGDYRET 239

Query: 248 NLLHQAGIETNLRAENLSIEDFC 270
                 G +   RAE++S+ ++ 
Sbjct: 240 IDFDALGFDLARRAEDVSVAEYV 262


>gi|34539998|ref|NP_904477.1| dimethyladenosine transferase [Porphyromonas gingivalis W83]
 gi|188994112|ref|YP_001928364.1| dimethyladenosine transferase [Porphyromonas gingivalis ATCC 33277]
 gi|62900561|sp|Q7MXN7|RSMA_PORGI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732608|sp|B2RHC2|RSMA_PORG3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|34396309|gb|AAQ65376.1| dimethyladenosine transferase [Porphyromonas gingivalis W83]
 gi|188593792|dbj|BAG32767.1| putative dimethyladenosine transferase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 258

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 132/267 (49%), Gaps = 19/267 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           ++  KK +GQ+FL DL+I ++IA++      + V+EIG G G LTQ LL  G   V VIE
Sbjct: 3   RVKAKKALGQHFLRDLSIAERIADTLSEHKALPVLEIGPGMGVLTQFLLRKG-HDVRVIE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    L++   +  +R  II+ D L     + F       +I N PYNI +++ F  
Sbjct: 62  IDGESVSYLREEFPELSDR--IIEGDFLHYPLSELFPGGRQYCLIGNYPYNISSQIFFRL 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P     + + Q+EV  R+ +      YG LSVL         +F +   VF P
Sbjct: 120 LDVREQIP---CCSGMLQREVAMRLASPPGKKDYGILSVLLQLWYNIEYLFTVDASVFDP 176

Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    +    +PC  ++LK + + AFG+RRKTLR SL+ +        AG +
Sbjct: 177 PPKVQSGVIRLTRNDRKELPCSEKALKTVVKTAFGQRRKTLRNSLRGILP------AGFD 230

Query: 257 ------TNLRAENLSIEDFCRITNILT 277
                  + R E LS +DF  +T +L 
Sbjct: 231 RFDEPVFSKRPEQLSPDDFIALTLLLQ 257


>gi|289749539|ref|ZP_06508917.1| LOW QUALITY PROTEIN: dimethyladenosine transferase ksgA
           [Mycobacterium tuberculosis T92]
 gi|289690126|gb|EFD57555.1| LOW QUALITY PROTEIN: dimethyladenosine transferase ksgA
           [Mycobacterium tuberculosis T92]
          Length = 318

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 19/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +       P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL
Sbjct: 16  RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALL 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L+   ++H     +RL ++  D L +  E     ++P  ++
Sbjct: 76  DRGA-TVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLA--AAPTAVV 132

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + +      P    +T++ Q EV ER+ A+  S  YG  SV   +  
Sbjct: 133 ANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFG 189

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238
           +      +SP VF+P P+V S ++    +        ++ ++    +   AF +RRKT R
Sbjct: 190 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 249

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
            +  +  G      N L  A I+   R E LSI+DF R+
Sbjct: 250 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288


>gi|265765406|ref|ZP_06093681.1| dimethyladenosine transferase [Bacteroides sp. 2_1_16]
 gi|263254790|gb|EEZ26224.1| dimethyladenosine transferase [Bacteroides sp. 2_1_16]
 gi|301161792|emb|CBW21332.1| putative dimethyladenosine transferase [Bacteroides fragilis 638R]
          Length = 272

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL + + IA++  +   + ++E+G G G LTQ L+    R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVK-KERLVKVVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++      +   II+DD LK++ ++ F+   P  +  N PYNI +++ F  +
Sbjct: 63  DYESVAYLREAYPSLEDN--IIEDDFLKMNLQRLFD-GHPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL     +   +F ++  VF P 
Sbjct: 120 DNKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYRVEYLFTVNEQVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +    + C  +  K+I +  F +RRKTLR S+K + G++         
Sbjct: 177 PKVKSAVIRMTRNETQELGCDPKLFKQIVKTTFNQRRKTLRNSIKPILGKDCPLTEDTLF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
           N R E LS+++F  +TN + 
Sbjct: 237 NKRPEQLSVQEFIHLTNQVE 256


>gi|84497817|ref|ZP_00996614.1| dimethyladenosine transferase [Janibacter sp. HTCC2649]
 gi|84381317|gb|EAP97200.1| dimethyladenosine transferase [Janibacter sp. HTCC2649]
          Length = 295

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/283 (28%), Positives = 129/283 (45%), Gaps = 17/283 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ + + + I P K  GQNF++D N +++I   +G      V+EIG G G+LT  LL
Sbjct: 9   AAQIRELAARFGIRPTKSWGQNFVIDANTVQRIVRVAGVGPDDVVVEIGPGLGSLTLALL 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122
            +     +V   D      L +           RL ++  DAL++   +     +P  ++
Sbjct: 69  PVVRHVTVVE-VDPILAGALPETVETVAPGVVERLTVVHADALRI---EELPGDAPTALV 124

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYNI   ++ N++         E + ++ Q EV ER+ A+  S  YG  SV   W  
Sbjct: 125 ANLPYNISVPVVLNFLERFA---SLERILVMVQLEVAERLAAKPGSKIYGVPSVKAAWYA 181

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSL 241
           + T+  ++S  VF+P P V S ++  +    P      E +      AF +RRKTLR +L
Sbjct: 182 EVTLAGNVSRSVFWPVPNVDSGLVKLVRREQPTTDASREQVFACIDAAFAQRRKTLRAAL 241

Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
               G        L  AGI+   R E L +  F  I +    N
Sbjct: 242 ATWAGSPSAAEAALVAAGIDPRTRGEQLDVHQFAAIASAHRAN 284


>gi|319765025|ref|YP_004128962.1| dimethyladenosine transferase [Alicycliphilus denitrificans BC]
 gi|330827220|ref|YP_004390523.1| dimethyladenosine transferase [Alicycliphilus denitrificans K601]
 gi|317119586|gb|ADV02075.1| dimethyladenosine transferase [Alicycliphilus denitrificans BC]
 gi|329312592|gb|AEB87007.1| dimethyladenosine transferase [Alicycliphilus denitrificans K601]
          Length = 255

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/262 (33%), Positives = 130/262 (49%), Gaps = 12/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+    R + VIE
Sbjct: 2   KHIPRKRFGQHFLSDPGIIDAIVRAIAPRPGQHMVEIGPGLAALTQPLVERLGR-LTVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135
            D+     L+        +L++I+ D LKVDF +      +  IR++ NLPYNI T +LF
Sbjct: 61  LDRDLAARLRQH-----GQLDVIESDVLKVDFTQVAQTLAAPKIRVVGNLPYNISTPILF 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + ++        E    + QKEV +R+ A   +  YGRLSV+  WR     +  + P  F
Sbjct: 116 HLMAHVQ---IIEDQHFMLQKEVIDRMVAAPATAAYGRLSVMLQWRYAMEDVLFVPPGSF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P P+V S V+  +PH  P       L ++ Q AF +RRK LR +L R   E   +  G 
Sbjct: 173 DPPPRVDSAVVRMLPHARPAAVDEALLSELVQVAFSQRRKLLRHTLGRWL-EGHGYAGGF 231

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +T  RAE + +  +  +   L 
Sbjct: 232 DTQRRAEEVPVAHYVALAQELA 253


>gi|312134313|ref|YP_004001651.1| dimethyladenosine transferase [Caldicellulosiruptor owensensis OL]
 gi|311774364|gb|ADQ03851.1| dimethyladenosine transferase [Caldicellulosiruptor owensensis OL]
          Length = 282

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 147/284 (51%), Gaps = 13/284 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        L   L  Y + P K +GQNFL+D N+++KI       +G  VIEIGAGPG 
Sbjct: 1   MDFAITKTELLNFLKKYGLSPNKKLGQNFLVDENVVRKII-LFSQAEGKEVIEIGAGPGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  L  + ARKV+ +E D++   +LK++    PN ++I+ +D LK++ +   N    + 
Sbjct: 60  LTVYLAEI-ARKVVAVEIDKKILNVLKEVCQDIPN-IQIVNNDFLKLNVKDLTNTGR-VY 116

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ NLPY I +++LF          + E  T++ QKEV +R+ A+  +  YG L+V   +
Sbjct: 117 IVGNLPYYITSQILFKLFEERE---YIEKFTIMVQKEVAQRLLAKPGTKEYGNLTVAMKF 173

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +    F +S +VF+P P+V S V+      +          KI    F  RRKT+  +
Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSAVLRARFKDSLPEIEHRDFFKIVHACFSTRRKTILNA 233

Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L           + +++ A ++ NLRAE+LS++D+ R+     +
Sbjct: 234 LSNHFDIGKDKLKRIINMAEVDENLRAEDLSLDDYIRLYKCFEE 277


>gi|29840068|ref|NP_829174.1| dimethyladenosine transferase [Chlamydophila caviae GPIC]
 gi|33301245|sp|Q823V2|RSMA_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|29834416|gb|AAP05052.1| dimethyladenosine transferase [Chlamydophila caviae GPIC]
          Length = 278

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 143/285 (50%), Gaps = 14/285 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+ ++     + +       PKK + QNFL+D NIL+KI   S    G  V+EIG G G 
Sbjct: 1   MSRSSPDQLTRFLAQVQG-RPKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT++L+  GA  V+ +EKD  F   LK +    P  LEI       +   +        R
Sbjct: 60  LTEVLVNQGAH-VVALEKDPMFEETLKQL----PIDLEITDACKYPLSQLEEKGWQGKGR 114

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY+I T LL         P  W+++T++ Q EV  RITAQ     YG L++   +
Sbjct: 115 VVANLPYHITTPLLTKLFLE--VPNQWKTVTVMMQDEVARRITAQPGGKEYGSLTIFLQF 172

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLR 238
                  F +SP  FFP P+V+S V+H       P+   L +    +T+ AFG+RRK L 
Sbjct: 173 FADVRYAFKVSPGCFFPKPQVSSAVVHMTVKETFPLETSLHQKFFSLTRAAFGQRRKLLA 232

Query: 239 QSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILTDN 279
            +LK L  + L    L+Q       R E LS+ ++ ++ ++L+ N
Sbjct: 233 NALKDLYPKELVFSALNQLNFSEKTRPETLSLNEYLQLFHLLSSN 277


>gi|319778500|ref|YP_004129413.1| Dimethyladenosine transferase [Taylorella equigenitalis MCE9]
 gi|317108524|gb|ADU91270.1| Dimethyladenosine transferase [Taylorella equigenitalis MCE9]
          Length = 259

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 132/263 (50%), Gaps = 13/263 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             +K  GQ+FL D ++  +I           V+EIG G   LT +LL      + VIE D
Sbjct: 4   QARKRFGQHFLTDQSVPDEIVRKLSLNASDCVVEIGPGLSALTNVLL-SKLNHLYVIEID 62

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +     L+    +  ++L +I+ D L VDF  F    +P+RI+ NLPYNI + +LF+ + 
Sbjct: 63  RDLAAKLRKTHDE--SKLTVIESDVLDVDFSIF---PTPLRIVGNLPYNISSPILFHLLK 117

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                        + QKEV +R+ A+  S  YGRLSV+   R K   + D+ P  F P P
Sbjct: 118 YAD---SVVDQHFMLQKEVVDRMVAKPGSSEYGRLSVMLQERYKMHSILDVPPEAFTPPP 174

Query: 200 KVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  +P     P P   +   K+ Q+AF +RRK LR  LK    +       I  
Sbjct: 175 KVDSAVVKMLPLASDRPKPKSYDVFSKVVQQAFSQRRKMLRGVLKSYDID--WEFLNINE 232

Query: 258 NLRAENLSIEDFCRITNILTDNQ 280
            LRAE+L ++D+ ++++ + + +
Sbjct: 233 ALRAEDLGVDDYIKLSDFILEKR 255


>gi|114799371|ref|YP_760849.1| dimethyladenosine transferase [Hyphomonas neptunium ATCC 15444]
 gi|114739545|gb|ABI77670.1| dimethyladenosine transferase [Hyphomonas neptunium ATCC 15444]
          Length = 285

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 105/269 (39%), Positives = 148/269 (55%), Gaps = 17/269 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            +K +GQ+FL D +ILK+ A ++G L G TVIE+G GPG LT+ +L      +I +E D 
Sbjct: 22  ARKALGQHFLFDPSILKRAANAAGPLKGKTVIEVGPGPGGLTRAILNEEPALLIAVETDP 81

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS---PIRIIANLPYNIGTRLLFNW 137
           +F   L         RL++I  DA KV +EK    +    P+ IIANLPYN+GT LL +W
Sbjct: 82  RFSEALMSWPEAKNGRLQVIARDARKVHWEKVLQEAGAATPVMIIANLPYNVGTPLLIDW 141

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           + A  W      + L+FQ+EV ERI AQ ++  YGRL+V++   T+  + F + P  F P
Sbjct: 142 LKAGDWRGP---MALMFQREVAERICAQPDTDAYGRLAVISQAVTRPRIAFTLPPGAFRP 198

Query: 198 SPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLK------RLGGEN 248
            PKV S V+ F P   P     E    L++I   AFG+RRK LR +LK       +  E 
Sbjct: 199 PPKVDSAVVEFEPL--PPGERFEHLALLEQIAGAAFGQRRKMLRAALKPFAKKRGMKAEA 256

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
            L   GI+   RAE L+  +F ++   L 
Sbjct: 257 WLEDCGIKPTARAETLTQAEFRKLATSLA 285


>gi|212278077|gb|ACJ23053.1| KsgA [Neisseria gonorrhoeae]
          Length = 248

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 123/263 (46%), Gaps = 22/263 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+                L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIV-------------LVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 106

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 107 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 163

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 164 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 223

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE+++ E +  ++N L D 
Sbjct: 224 PQDRAEHIAPEKYVALSNYLADK 246


>gi|325270787|ref|ZP_08137378.1| dimethyladenosine transferase [Prevotella multiformis DSM 16608]
 gi|324986903|gb|EGC18895.1| dimethyladenosine transferase [Prevotella multiformis DSM 16608]
          Length = 290

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 131/266 (49%), Gaps = 13/266 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL+DL+I ++IA++  +   I ++EIG G G LTQ L+    R+V  +E 
Sbjct: 4   VKPKKNLGQHFLVDLSIARRIADTVDACPDIPILEIGPGMGVLTQYLVG-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +          I+ +D L++D  + F+      +  N PY+I +++ F  +
Sbjct: 63  DAESVAYLYEKFPTLHE--HILGEDFLRMDLSQVFD-GRQFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ A   S  YG LSVL         +F +  +VF P 
Sbjct: 120 DYKDLIP---CCTGMIQREVALRMAAGPGSKAYGILSVLMQAWYDVEYLFTVDENVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253
           PKV S VI    + +  + C  +  K++ +  F +RRK LR SL++L       +  +  
Sbjct: 177 PKVKSAVIRMTRNGVTDLGCDGQLFKRLVKAVFNQRRKMLRVSLRQLFNTGKPADSFYAQ 236

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
            I    R E LSI  F  +TN + + 
Sbjct: 237 DI-MTKRPEQLSIPQFVELTNKVDEQ 261


>gi|15608150|ref|NP_215526.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Rv]
 gi|15840438|ref|NP_335475.1| dimethyladenosine transferase [Mycobacterium tuberculosis CDC1551]
 gi|31792201|ref|NP_854694.1| dimethyladenosine transferase [Mycobacterium bovis AF2122/97]
 gi|121636939|ref|YP_977162.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148660792|ref|YP_001282315.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra]
 gi|148822220|ref|YP_001286974.1| dimethyladenosine transferase [Mycobacterium tuberculosis F11]
 gi|167968132|ref|ZP_02550409.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra]
 gi|215402826|ref|ZP_03415007.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987]
 gi|215410613|ref|ZP_03419421.1| dimethyladenosine transferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|215429871|ref|ZP_03427790.1| dimethyladenosine transferase [Mycobacterium tuberculosis EAS054]
 gi|218752682|ref|ZP_03531478.1| dimethyladenosine transferase [Mycobacterium tuberculosis GM 1503]
 gi|219556877|ref|ZP_03535953.1| dimethyladenosine transferase [Mycobacterium tuberculosis T17]
 gi|224989411|ref|YP_002644098.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|254231305|ref|ZP_04924632.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis C]
 gi|254363926|ref|ZP_04979972.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549996|ref|ZP_05140443.1| dimethyladenosine transferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185921|ref|ZP_05763395.1| dimethyladenosine transferase [Mycobacterium tuberculosis CPHL_A]
 gi|260200039|ref|ZP_05767530.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46]
 gi|260204228|ref|ZP_05771719.1| dimethyladenosine transferase [Mycobacterium tuberculosis K85]
 gi|289442431|ref|ZP_06432175.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46]
 gi|289446592|ref|ZP_06436336.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555207|ref|ZP_06444417.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN
           605]
 gi|289568987|ref|ZP_06449214.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T17]
 gi|289573650|ref|ZP_06453877.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis K85]
 gi|289744746|ref|ZP_06504124.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987]
 gi|289753071|ref|ZP_06512449.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           EAS054]
 gi|289761146|ref|ZP_06520524.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis GM
           1503]
 gi|294995200|ref|ZP_06800891.1| dimethyladenosine transferase [Mycobacterium tuberculosis 210]
 gi|297633537|ref|ZP_06951317.1| dimethyladenosine transferase [Mycobacterium tuberculosis KZN 4207]
 gi|297730522|ref|ZP_06959640.1| dimethyladenosine transferase [Mycobacterium tuberculosis KZN R506]
 gi|298524506|ref|ZP_07011915.1| dimethyladenosine transferase dimethyltransferase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775146|ref|ZP_07413483.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu001]
 gi|306781939|ref|ZP_07420276.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu002]
 gi|306783706|ref|ZP_07422028.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu003]
 gi|306788061|ref|ZP_07426383.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu004]
 gi|306792394|ref|ZP_07430696.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu005]
 gi|306796797|ref|ZP_07435099.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu006]
 gi|306806862|ref|ZP_07443530.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu007]
 gi|306971253|ref|ZP_07483914.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu010]
 gi|307078981|ref|ZP_07488151.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu011]
 gi|307083542|ref|ZP_07492655.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu012]
 gi|313657851|ref|ZP_07814731.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Mycobacterium tuberculosis KZN V2475]
 gi|54037708|sp|P66661|RSMA_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|54041549|sp|P66660|RSMA_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221680|sp|A1KHE8|RSMA_MYCBP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221681|sp|A5U153|RSMA_MYCTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807874|sp|C1AM01|RSMA_MYCBT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|2052147|emb|CAB08137.1| PROBABLE DIMETHYLADENOSINE TRANSFERASE KSGA
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase) [Mycobacterium tuberculosis H37Rv]
 gi|13880609|gb|AAK45289.1| dimethyladenosine transferase [Mycobacterium tuberculosis CDC1551]
 gi|31617789|emb|CAD93898.1| PROBABLE DIMETHYLADENOSINE TRANSFERASE KSGA
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase) [Mycobacterium bovis AF2122/97]
 gi|121492586|emb|CAL71054.1| Probable dimethyladenosine transferase ksgA [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124600364|gb|EAY59374.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis C]
 gi|134149440|gb|EBA41485.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148504944|gb|ABQ72753.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Ra]
 gi|148720747|gb|ABR05372.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis F11]
 gi|224772524|dbj|BAH25330.1| dimethyladenosine transferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289415350|gb|EFD12590.1| dimethyladenosine transferase [Mycobacterium tuberculosis T46]
 gi|289419550|gb|EFD16751.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289439839|gb|EFD22332.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN
           605]
 gi|289538081|gb|EFD42659.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis K85]
 gi|289542741|gb|EFD46389.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T17]
 gi|289685274|gb|EFD52762.1| dimethyladenosine transferase [Mycobacterium tuberculosis 02_1987]
 gi|289693658|gb|EFD61087.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           EAS054]
 gi|289708652|gb|EFD72668.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis GM
           1503]
 gi|298494300|gb|EFI29594.1| dimethyladenosine transferase dimethyltransferase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216296|gb|EFO75695.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu001]
 gi|308325330|gb|EFP14181.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu002]
 gi|308331489|gb|EFP20340.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu003]
 gi|308335295|gb|EFP24146.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu004]
 gi|308339103|gb|EFP27954.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu005]
 gi|308342775|gb|EFP31626.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu006]
 gi|308346684|gb|EFP35535.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu007]
 gi|308359187|gb|EFP48038.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu010]
 gi|308363121|gb|EFP51972.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu011]
 gi|308366753|gb|EFP55604.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           SUMu012]
 gi|323720511|gb|EGB29593.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904763|gb|EGE51696.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis
           W-148]
 gi|328459703|gb|AEB05126.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN
           4207]
          Length = 317

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 19/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +       P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL
Sbjct: 16  RTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALL 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L+   ++H     +RL ++  D L +  E     ++P  ++
Sbjct: 76  DRGA-TVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLA--AAPTAVV 132

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + +      P    +T++ Q EV ER+ A+  S  YG  SV   +  
Sbjct: 133 ANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFG 189

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238
           +      +SP VF+P P+V S ++    +        ++ ++    +   AF +RRKT R
Sbjct: 190 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 249

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
            +  +  G      N L  A I+   R E LSI+DF R+
Sbjct: 250 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288


>gi|221211273|ref|ZP_03584252.1| dimethyladenosine transferase [Burkholderia multivorans CGD1]
 gi|221168634|gb|EEE01102.1| dimethyladenosine transferase [Burkholderia multivorans CGD1]
          Length = 305

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 122/276 (44%), Gaps = 20/276 (7%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           +M+N          H     +K  GQNFL+D  ++  I  +     G  ++EIG G G L
Sbjct: 30  SMSNSRQ-------HQGHFARKRFGQNFLVDHGVIDSIVATIAPARGQRMVEIGPGLGAL 82

Query: 62  TQMLLTLGA---RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-- 116
           T+ L+   A     +  +E D+     LK         LE+   DAL  DF         
Sbjct: 83  TEPLIARLATPETPLHAVELDRDLIARLKQRFGAL---LELHAGDALAFDFRSLAAPGDA 139

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +RI+ NLPYNI + LLF+ +   T+         + Q EV ER+ A+  +  + RLSV
Sbjct: 140 PSLRIVGNLPYNISSPLLFHLM---TFADVVVDQHFMLQNEVVERMVAEPGTKAFSRLSV 196

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRR 234
           +  +R     + D+ P  F P PKV S ++  IP+            L +I   AF +RR
Sbjct: 197 MLQYRYVMDKLIDVPPESFQPPPKVDSAIVRMIPYAPHELPDVDPVLLGEIVTAAFSQRR 256

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFC 270
           K LR +L            G +   RAE++S+ ++ 
Sbjct: 257 KMLRNTLGDYRETIDFDALGFDLARRAEDVSVAEYV 292


>gi|83719203|ref|YP_441135.1| dimethyladenosine transferase [Burkholderia thailandensis E264]
 gi|167579886|ref|ZP_02372760.1| dimethyladenosine transferase [Burkholderia thailandensis TXDOH]
 gi|167617960|ref|ZP_02386591.1| dimethyladenosine transferase [Burkholderia thailandensis Bt4]
 gi|257140203|ref|ZP_05588465.1| dimethyladenosine transferase [Burkholderia thailandensis E264]
 gi|119365011|sp|Q2T114|RSMA_BURTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83653028|gb|ABC37091.1| dimethyladenosine transferase [Burkholderia thailandensis E264]
          Length = 275

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 120/262 (45%), Gaps = 13/262 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  ++   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPDS 65

Query: 73  -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NISSPIRIIANLPYNI 129
            +  +E D+     LK    +    LE+ + DAL  DF           +RII NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLKQRFGEL---LELHEGDALAFDFGSLALPGEKPSLRIIGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ +S   + P       + Q EV ER+ A+  +  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLMS---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IPH            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDL 239

Query: 248 NLLHQAGIETNLRAENLSIEDF 269
                 G +   RAE++ ++++
Sbjct: 240 VDFDALGFDLARRAEDVGVDEY 261


>gi|301310976|ref|ZP_07216905.1| dimethyladenosine transferase [Bacteroides sp. 20_3]
 gi|300831039|gb|EFK61680.1| dimethyladenosine transferase [Bacteroides sp. 20_3]
          Length = 266

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/256 (35%), Positives = 129/256 (50%), Gaps = 9/256 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL I ++IA++  +   + V+EIG G G LTQ LL  G   + V+E 
Sbjct: 4   VKPKKALGQHFLKDLQIAQRIADTLDTFKSLPVLEIGPGMGVLTQFLLEAG-HDLTVVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L         R  II +D LK+D  K F       +I N PYNI +++ F  +
Sbjct: 63  DMESVDYLNLNFPDLKGR--IIAEDFLKLDLSKLF--PGQFCVIGNYPYNISSQIFFKVL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     + + QKEV ER+ A   S  YG LSVL         +F +S  VF P 
Sbjct: 119 DYKDQIP---CCSGMLQKEVAERLAAGPGSKTYGILSVLLQAWYDVEYLFTVSEKVFDPP 175

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S V+    +    + C  +  K + + +F +RRKTLR S+K L G++    A    
Sbjct: 176 PKVKSAVLKITRNDRKELGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDYALPIF 235

Query: 258 NLRAENLSIEDFCRIT 273
           + R E LS+E F  +T
Sbjct: 236 DKRPEQLSVEQFVELT 251


>gi|288803714|ref|ZP_06409143.1| dimethyladenosine transferase [Prevotella melaninogenica D18]
 gi|288333803|gb|EFC72249.1| dimethyladenosine transferase [Prevotella melaninogenica D18]
          Length = 267

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 132/266 (49%), Gaps = 13/266 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL+I ++IA++  +   I V+EIG G G LTQ L+    R+V  +E 
Sbjct: 4   VKPKKNLGQHFLTDLSIARQIADTVDACPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +   +   R  I+  D L++D  + F+      +  N PY+I +++ F  +
Sbjct: 63  DSESVAFLYEKFPKL--RENILGQDFLRMDLNEVFD-GRQFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV +R+ A   S  YG LSVL         +F +  +VF P 
Sbjct: 120 EYKDLIP---CCTGMIQREVAQRMAAGPGSKTYGILSVLMQAWYNVEYLFTVDENVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253
           PKV S VI    +    I C     K++ +  F +RRK LR SL+++       +  ++ 
Sbjct: 177 PKVKSAVIRMTRNEVTDIGCDQVLFKRVVKTVFNQRRKMLRVSLRQIFNAVKPTDGFYEQ 236

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
            I    R E LSI  F  +TN++ + 
Sbjct: 237 DI-MTKRPEQLSIAQFVELTNMVEEQ 261


>gi|41407073|ref|NP_959909.1| dimethyladenosine transferase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|62900553|sp|Q741W2|RSMA_MYCPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|41395424|gb|AAS03292.1| KsgA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 318

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 132/286 (46%), Gaps = 19/286 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +    +  P+K +GQNF+ D N ++++  +SG      V+E+G G G LT  LL
Sbjct: 19  RTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVGPGLGPLTLALL 78

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L    ++H +    RL ++  D L +  ++      P  ++
Sbjct: 79  DRGAH-VTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDELAE--PPTAVV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + ++     P   ++T++ Q EV ER+ A+     YG  SV   +  
Sbjct: 136 ANLPYNVAVPALLHLLAE---FPSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFG 192

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLR 238
           +      +SP VF+P P+V S ++    +        P     + ++   AFG+RRKT R
Sbjct: 193 RVRRCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPTDPAFRRQVFELVDIAFGQRRKTCR 252

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            +     G      + L  A I+   R E LSI+DF R+     D 
Sbjct: 253 NAFVDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADR 298


>gi|325676279|ref|ZP_08155958.1| dimethyladenosine transferase [Rhodococcus equi ATCC 33707]
 gi|325552840|gb|EGD22523.1| dimethyladenosine transferase [Rhodococcus equi ATCC 33707]
          Length = 296

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 19/282 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +   + + P K +GQNF+ D N +++I   +G     TV+E+G G G+LT  LL
Sbjct: 20  PAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVTVAGVGPEDTVLEVGPGLGSLTLALL 79

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            +   +V+ +E D +    L     D + +  +RL ++  DA++V  +     + P  ++
Sbjct: 80  DV-VDRVVAVEIDPKLAARLPATVADRAPELADRLTVVGADAMRVIPDDV--PAEPTAVV 136

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L +  +     P   +  ++ Q EV +R+ A   S  YG  SV   +  
Sbjct: 137 ANLPYNVAVPVLLHLFAE---FPSLRTALVMVQAEVADRLAATPGSKVYGVPSVKANFFG 193

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC---LESLKKITQEAFGKRRKTLR 238
                  +   VF+P P+V S ++    +   P P        +  +   AF +RRKTLR
Sbjct: 194 TVKRAGHVGRAVFWPVPQVESGLVRIDRYEQAPWPIDADHRRKVFAVIDAAFAQRRKTLR 253

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
            +L    G     E  L  AGIE + R E L    F R+ N+
Sbjct: 254 AALAGWAGSPVEAERRLVAAGIEPSTRGEKLDAAAFVRLANV 295


>gi|297564142|ref|YP_003683115.1| dimethyladenosine transferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848591|gb|ADH70609.1| dimethyladenosine transferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 293

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 126/278 (45%), Gaps = 17/278 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++T+   + I P K +GQNF++D   +++I   +G  +   V+E+G G G+LT  LL
Sbjct: 18  PADVRTLAERFGIRPTKTLGQNFVIDHGTVRRIVRVAGVTEEDAVVEVGPGLGSLTLALL 77

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
               R V  +E D      L    + H     +RL ++  DA++V          P  ++
Sbjct: 78  PH-VRHVTAVEIDPALAEALPGTVADHAPDLADRLTVVHGDAMRVTG---LPGPEPTALV 133

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L          P    + ++ Q EV +R+TA      YG  S    W  
Sbjct: 134 ANLPYNVSVPVLL---HLLELLPSLRRVLVMVQAEVADRVTASPGGRVYGVPSAKVAWYA 190

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
            A     +  +VF+P+P V S ++  I    P      E + ++   AF +RRKTLR +L
Sbjct: 191 GARRAGAVGRNVFWPAPNVDSGLVELIRRPPPATTASREEVFQVIDAAFAQRRKTLRAAL 250

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
               G     E  L  AG++ + R E+L +  F  I  
Sbjct: 251 AGWAGSPPAAETALRAAGVDPSARGESLDVTAFAAIAE 288


>gi|290968589|ref|ZP_06560127.1| dimethyladenosine transferase [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781242|gb|EFD93832.1| dimethyladenosine transferase [Megasphaera genomosp. type_1 str.
           28L]
          Length = 294

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 131/275 (47%), Gaps = 13/275 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ I+  + +   K +GQNFL+    +  IAE++    G  V+EIG G G LTQ L   G
Sbjct: 12  VRYIVRRFGLHMNKKLGQNFLIRHEAVAAIAEAAALTPGEQVLEIGPGIGTLTQALAETG 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V  +E D    PIL    + + N +++I  D ++V          P  + ANLPY I
Sbjct: 72  A-AVRAVEVDAGLLPILAKTLAHYDN-VQVIHGDIMRVSIPDIME-HKPFTVCANLPYYI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++   +           L  + QKEV +R+ A   S  YG LSV   + T+A ++F+
Sbjct: 129 TTPIIMQLLEQRLP---IRRLVFMVQKEVAQRMVAAPGSKVYGALSVAVQYYTQAELLFE 185

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGE 247
           I P  F P+P+VTS V+       P     E     K+ + AF +RRK  R +L+  G  
Sbjct: 186 IPPQAFMPAPEVTSAVVALQVRTEPPVKVQEEARFFKVVKAAFAQRRKVFRNALQGAGIS 245

Query: 248 N-----LLHQAGIETNLRAENLSIEDFCRITNILT 277
                 +L +A I+   R E L +++F  +    T
Sbjct: 246 KETVTRMLREAQIDGERRGETLDLQEFAAVAEAWT 280


>gi|302380914|ref|ZP_07269376.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3]
 gi|302311292|gb|EFK93311.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3]
          Length = 283

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 142/285 (49%), Gaps = 15/285 (5%)

Query: 3   MNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M+ K H    +K IL  +     K +GQNFL+D N+++ I + S   +   VIEIG G G
Sbjct: 1   MSYKLHQPSYIKEILDKFGFKFSKALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            LT+ L+    + +  IE D +   +LK       N  +II +D LKV+  +  +     
Sbjct: 61  TLTERLVD-KCKFLYSIEIDSRLMDVLKYTVGDREN-FKIINEDVLKVNLNELNHEDKKF 118

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++ +      +    ES+T++ QKEV  R+ A   S  Y  LS+   
Sbjct: 119 KVVANLPYYITTPIIEHLF---NYRDIIESITVMVQKEVANRMVADVGSKDYASLSLFVK 175

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
             + A ++ +    VF P PKV S V++            E L+++ +  F KRRKT+  
Sbjct: 176 QNSDAKIILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTILN 235

Query: 240 SLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           S             + +L + G++ NLRAENLS+ED+  I   L+
Sbjct: 236 SFTSGFVNVDKEKLKAILQELGLKENLRAENLSLEDYKNIVKKLS 280


>gi|328873034|gb|EGG21401.1| Dimethyladenosine transferase [Dictyostelium fasciculatum]
          Length = 470

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 106/291 (36%), Positives = 162/291 (55%), Gaps = 21/291 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ ++  Y +  K+ + QNFLLDLNI  KI   +G     TVIE+GAGPG LT+ LLT G
Sbjct: 9   IQDLIRMYGLSAKQQLSQNFLLDLNITDKICREAGGFKDCTVIEVGAGPGGLTRSLLTAG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF----------FNISSPI 119
           A+KVI +E D++F P L+ +      RL ++  D +KVD  +           +   S +
Sbjct: 69  AKKVIAVEMDRRFIPALRMLEEASEGRLSVVMGDMMKVDEGELLRHFQAEKMPWEEKSKV 128

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITAQKNSPHYGRL 174
           +I+ NLP+N+GT L+  W+          +     + L+FQKE+ ERI A  +S +YGRL
Sbjct: 129 KIVGNLPFNVGTHLMLKWVRQIKPREGLYAYGRVPMVLMFQKELAERIIAPVDSHNYGRL 188

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGK 232
           +V+ G    + +++D+   VF P PKV ++VIH  P + PI      E L+ I +  F  
Sbjct: 189 AVMVGQECHSKIIYDLPGKVFVPPPKVDASVIHIEPLVEPIGQVDSKEHLEFICRSLFNH 248

Query: 233 RRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           RRKT+  +LK +  G E LL    I+ + R ++L+ ++F  ITN  T   D
Sbjct: 249 RRKTISNALKPMGKGSEGLLG--DIDPSRRPQSLTFKEFADITNRYTAWPD 297


>gi|302871038|ref|YP_003839674.1| dimethyladenosine transferase [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302573897|gb|ADL41688.1| dimethyladenosine transferase [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 282

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 147/284 (51%), Gaps = 13/284 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M +      L  +L  Y++ P K +GQNFL+D N+++KI       +G  VIEIGAGPG 
Sbjct: 1   MNLAITKTELLNLLKKYELSPNKKLGQNFLIDENVVRKII-LFSQTEGKEVIEIGAGPGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  L    A+KV  +E D++   +LK++     N ++I+  D L+++ +      + I 
Sbjct: 60  LTIYLAKT-AQKVFAVEIDKKILNVLKEVCQNLSN-VQIVNSDFLELNVKNLTK-GNKIY 116

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ NLPY + +++LF            E  T++ QKEV +R+ A+  +  YG L+V   +
Sbjct: 117 VVGNLPYYVTSQILFKLFEEREC---IEKFTIMVQKEVAQRLLAEPGTKEYGNLTVAMNF 173

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +    F +S +VF+P P+V STV+     +       +   KI    F  RRKT+  +
Sbjct: 174 YCEIEDYFYVSKNVFYPKPEVDSTVLRARFKIEKPNIDEKKFFKIVHACFSTRRKTILNA 233

Query: 241 LKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L           + +++ A ++ NLRAE+LS++D+ R+     +
Sbjct: 234 LSNHFDIEKDKLKRIINMAEVDENLRAEDLSLDDYIRLYKCFEE 277


>gi|288800845|ref|ZP_06406302.1| dimethyladenosine transferase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332306|gb|EFC70787.1| dimethyladenosine transferase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 279

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 17/275 (6%)

Query: 13  ILSHYK------IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  HYK      + PKK +GQ+FL+D +I ++IA++  +   I V+EIG G G LTQ ++
Sbjct: 3   LCKHYKYGMIKQVKPKKNLGQHFLIDQSIARRIADTVDACPDIPVLEIGPGMGVLTQYIV 62

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
               R    +E D++    L +       R  II +D L++D    F+      +  N P
Sbjct: 63  QKQ-RPFKAVEIDRESVTYLNEAFPTL--RENIIGNDFLQMDLNDVFD-GKSFVLTGNYP 118

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y+I +++ F  +      P     T + Q+EV  RI ++  +  YG LSVL         
Sbjct: 119 YDISSQIFFKMLDYKELIP---CCTGMIQREVALRIASEPGNKSYGILSVLIQAWYDVEY 175

Query: 187 MFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           +F +  +VF P PKV S VI      +  + C  +  K++ +  F +RRK LR SLK++ 
Sbjct: 176 LFTVDENVFNPPPKVKSAVIRMTRNKVEKLDCDEQLFKRVVKTVFNQRRKMLRVSLKQIF 235

Query: 246 GENLLHQAGIE---TNLRAENLSIEDFCRITNILT 277
             +    A  E      R E LS+  F  +TN++ 
Sbjct: 236 NVSAARPAFYEQEIMTKRPEQLSVAQFVELTNLVE 270


>gi|68536597|ref|YP_251302.1| dimethyladenosine transferase [Corynebacterium jeikeium K411]
 gi|119365018|sp|Q4JU23|RSMA_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|68264196|emb|CAI37684.1| dimethyladenosine transferase [Corynebacterium jeikeium K411]
          Length = 316

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 38/301 (12%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
            + ++ +     + P K +GQNF+ D N ++KI +++       V+EIG G G+LT  LL
Sbjct: 12  PNEIRQLAEELDLNPTKKLGQNFVHDPNTVRKIVKAADVTADDNVVEIGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQ---HPNRLEIIQDDALKVDFEKFFNISSPI--RI 121
             GA  V  +E D +    L     +       + +I  DA++V  + F +   P+   +
Sbjct: 72  EAGA-SVTAVEIDPRLAAKLPATLEEQGAAEADVAVILKDAMEVAVQDFADAGRPLPTAL 130

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   +L + +      P  + + ++ Q EV +R+ A   S  YG  SV  G+ 
Sbjct: 131 VANLPYNVSVPVLLHMLEE---FPSIDRVLVMVQLEVADRLAAAPGSKIYGVPSVKAGFY 187

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN------------------------PIPC 217
                   I  +VF+P+PK+ S ++    +                              
Sbjct: 188 GSVARAATIGKNVFWPAPKIDSGLVRIDRYAEGAEPWAGGQSGAEQFDADQGIEQLDAQK 247

Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272
               +  +   AF +RRKTLR +L    G     E  L  AGI+  LR E LS E F ++
Sbjct: 248 LRREVFDLADAAFLQRRKTLRAALSGHFGSGQAAEEALRSAGIDPTLRGEKLSTEQFVQL 307

Query: 273 T 273
            
Sbjct: 308 A 308


>gi|218258231|ref|ZP_03474633.1| hypothetical protein PRABACTJOHN_00287 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225574|gb|EEC98224.1| hypothetical protein PRABACTJOHN_00287 [Parabacteroides johnsonii
           DSM 18315]
          Length = 290

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/256 (34%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL I ++IA++      + V+EIG G G LTQ LL  G   + V+E 
Sbjct: 33  VKPKKALGQHFLKDLQIAERIADTLSDYKQLPVLEIGPGMGVLTQFLLEKG-HDLTVVEL 91

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L+        +  I+ +D L++D  K F       +I N PYNI +++ F  +
Sbjct: 92  DMESVDYLEQNFPALEGK--ILAEDFLRLDLSKLF--PDQFCVIGNYPYNISSQIFFKVL 147

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     + + QKEV ER+ A   S  YG LSVL     +   +F +S  VF P 
Sbjct: 148 DYKEHIP---CCSGMIQKEVAERLAAGPGSKTYGILSVLLQAWYEVEYLFTVSEKVFDPP 204

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI  + +      C E L K + + +F +RRKTLR S+K L G++         
Sbjct: 205 PKVKSAVIRMVRNNRKSLGCDEKLFKTVVKTSFNQRRKTLRNSMKPLLGKDCPDYPLPIF 264

Query: 258 NLRAENLSIEDFCRIT 273
           + R E LS+E F  +T
Sbjct: 265 DKRPEQLSVEQFVELT 280


>gi|226500226|ref|NP_001150423.1| LOC100284053 [Zea mays]
 gi|195639144|gb|ACG39040.1| dimethyladenosine transferase [Zea mays]
          Length = 354

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 122/272 (44%), Gaps = 20/272 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I  +K  GQ+ L +  ++  I   +G     TV+EIG G GNLT+ LL  G + V+ +E
Sbjct: 22  GIPFEKSKGQHILRNPALVDSIVAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVE 81

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L      HP  +RL++IQ D LK D   F         +AN+PY I + L F
Sbjct: 82  LDPRMVLELNRRFQGHPLSSRLKVIQGDVLKCDLPYF------DICVANIPYQISSPLTF 135

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +S     P +    ++FQ+E   R+ AQ     Y RLSV     ++ + +  +  + F
Sbjct: 136 KLLSHR---PIFRCAVIMFQREFAMRLVAQPGDSLYCRLSVNVQLLSRVSHLLKVGRNNF 192

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P PKV S+V+   P     P   +    + +  F ++ KTL    K+     LL +   
Sbjct: 193 RPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRICFNRKNKTLGSLFKQKRVLELLEKNYK 252

Query: 256 ---------ETNLRAENLSIEDFCRITNILTD 278
                    +  +  E +S +D   + N++ D
Sbjct: 253 TMQSLQTVQDAEMGEEKMSADDVALLANMVED 284


>gi|212278085|gb|ACJ23057.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 11/254 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234

Query: 257 TNLRAENLSIEDFC 270
              RAE+++ E  C
Sbjct: 235 PQDRAEHIAPEKVC 248


>gi|315501792|ref|YP_004080679.1| dimethyladenosine transferase [Micromonospora sp. L5]
 gi|315408411|gb|ADU06528.1| dimethyladenosine transferase [Micromonospora sp. L5]
          Length = 289

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 131/279 (46%), Gaps = 15/279 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT       ++ + +   + P K +GQNF+ D N +++I  ++G       +E+G G G+
Sbjct: 1   MTGLLGPAEIRELAARIGVTPTKKLGQNFVHDPNTVRRIVTTAGLTPDDVALEVGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDI----SSQHPNRLEIIQDDALKVDFEKFFNIS 116
           LT  LL + A  V  +E D      L +     +     RL +   DAL+V  +      
Sbjct: 61  LTLALLPVAAH-VHAVELDPALAAALPETAARFAGAAAERLTVHPADALRVTADDLAG-P 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           +P  ++ANLPYN+   ++ + ++     P      ++ QKEV +R+ A   S  YG  SV
Sbjct: 119 APTALVANLPYNVAVPVVLHLLAE---LPTLRHGLVMVQKEVADRLVAGPGSKVYGIPSV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRK 235
              W  ++     + P+VF+P P V S ++ F     P P    +++  +   AF +RRK
Sbjct: 176 KLAWYARSRAAGKVPPNVFWPVPNVDSGLVAFTRREPPRPDVPRKAVFAVVDAAFAQRRK 235

Query: 236 TLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDF 269
           TLR      +         L  AG++ + R E+L++E F
Sbjct: 236 TLRAALAGWAGGADRAAAALTAAGVDPSARGESLTVEQF 274


>gi|94497692|ref|ZP_01304260.1| dimethyladenosine transferase [Sphingomonas sp. SKA58]
 gi|94422909|gb|EAT07942.1| dimethyladenosine transferase [Sphingomonas sp. SKA58]
          Length = 244

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 100/243 (41%), Positives = 145/243 (59%), Gaps = 5/243 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L +IA   G L   +  E+G GPG LT+ +L  G R ++ +E+D +  P L +++   P 
Sbjct: 2   LDRIAAIPGPLTDASAFEVGPGPGGLTRAILRAGGR-LVAVERDDRCLPALAELADAFPG 60

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP-PFWESLTLLF 154
           +L++I  DA+++D +          IIANLPYN+GT LL  W+SA   P P+W SLTL+F
Sbjct: 61  QLKVIAGDAMQIDAQ--AEAGDGAHIIANLPYNVGTPLLVGWLSAAWTPLPWWSSLTLMF 118

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           Q EV ERI A+  + HYGRL+VL+ WR+ A +   +    F P PKV S V+H  P   P
Sbjct: 119 QMEVAERIVAKPGTDHYGRLAVLSQWRSDARIAMKVHRSAFTPPPKVMSAVVHITPKPTP 178

Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRL-GGENLLHQAGIETNLRAENLSIEDFCRIT 273
               L+ L+++T  AFG+RRK +RQSLK L G  + L   GI+   RAE +S+E+F  + 
Sbjct: 179 EGVQLKLLERLTAAAFGQRRKMMRQSLKGLPGALDALDAEGIDPQRRAETVSVEEFVAVA 238

Query: 274 NIL 276
             +
Sbjct: 239 RRM 241


>gi|146298606|ref|YP_001193197.1| dimethyladenosine transferase [Flavobacterium johnsoniae UW101]
 gi|189028808|sp|A5FLP4|RSMA_FLAJ1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146153024|gb|ABQ03878.1| dimethyladenosine transferase [Flavobacterium johnsoniae UW101]
          Length = 261

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 90/261 (34%), Positives = 132/261 (50%), Gaps = 9/261 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK++GQ+FL D +I K IA++        V+EIG G G LT+ LL        VIE
Sbjct: 3   KVKAKKHLGQHFLKDESIAKAIADTLSLKGYDEVLEIGPGMGVLTKYLLDKPVN-TRVIE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    L     +  ++  II +D LK +  + +       II N PYNI ++++F  
Sbjct: 62  IDTESVEYLGVNYPKLKDK--IISEDFLKYNINQVYENKQ-FAIIGNFPYNISSQIVFRT 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P +  +   FQKEV ERI  +K S  YG LSVL         +F +S +VF P
Sbjct: 119 LEFRDQIPEFSGM---FQKEVAERICEKKGSKTYGILSVLAQAFYDTEYLFTVSENVFIP 175

Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S V+      +  +PC  +    + + AF +RRKTLR SLK L   + L +  I 
Sbjct: 176 PPKVKSGVMKMTRKEDYSLPCGEKLFFTVVKTAFQQRRKTLRNSLKTLNLSDKLRE-DII 234

Query: 257 TNLRAENLSIEDFCRITNILT 277
            + R E LS+E+F  +T  + 
Sbjct: 235 FDKRPEQLSVEEFIVLTQKIE 255


>gi|297624761|ref|YP_003706195.1| dimethyladenosine transferase [Truepera radiovictrix DSM 17093]
 gi|297165941|gb|ADI15652.1| dimethyladenosine transferase [Truepera radiovictrix DSM 17093]
          Length = 264

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 20/275 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L  + +   K  GQNFL+D  +L+ I  ++      TV+E+G G G LT+ L    
Sbjct: 1   MRELLERHGLRADKGFGQNFLVDEGVLRSIVAAAELGPQSTVLEVGPGLGVLTRELAAR- 59

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +VI +E D++  P+L++  +   N + ++  D L  D       S    ++ANLPYN+
Sbjct: 60  AGRVISVELDRRLLPVLQETLAGLGN-VTLVHGDGLTFDLSCLPEGS---AMVANLPYNV 115

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           GT +L   + +      +  + +L Q+EV ER++A   +P YG LSV+     +A  +  
Sbjct: 116 GTPILVRALESGR----FARVVVLLQREVAERLSATPGTPAYGALSVVVAHFGRARSVRL 171

Query: 190 ISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-- 245
           + P  F P P+VTS+V+     P   P P    +L ++ + AF  RRKTL+++L   G  
Sbjct: 172 VKPSAFSPPPEVTSSVVRLDLTPGRAPDP----ALFRLVRHAFAHRRKTLKKNLLMAGYP 227

Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                  L   G+E  +RAE LS+E F  +   L 
Sbjct: 228 AERVARALQTLGLEAQVRAERLSVEQFRALRQELE 262


>gi|254820388|ref|ZP_05225389.1| dimethyladenosine transferase [Mycobacterium intracellulare ATCC
           13950]
          Length = 310

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 19/290 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +    +  P+K +GQNF+ D N ++++  +SG      V+E+G G G+LT  LL
Sbjct: 16  RTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGIGRSDHVLEVGPGLGSLTLALL 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L D  ++H +    RL ++  D L +  ++      P  ++
Sbjct: 76  DRGA-PVTAVEIDPVLAERLPDTVAEHSHSEIQRLSVLNRDILTLRRDEL--DVQPTAVV 132

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + ++     P    +T++ Q EV ER+ A+     YG  SV   +  
Sbjct: 133 ANLPYNVAVPALLHLLAE---FPSIRVVTVMVQAEVAERLAAEPGGKEYGVPSVKVRFFG 189

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238
                  +SP VF+P P+V S ++    +        ++ ++    +   AF +RRKT R
Sbjct: 190 TVRRCGTVSPTVFWPIPRVYSGLVRIDRYATSPWPTADAFRRQVFELVDIAFAQRRKTCR 249

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            +     G      + L  A I+   R E LSI+DF R+     D    A
Sbjct: 250 NAFLDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADRSHSA 299


>gi|139438654|ref|ZP_01772138.1| Hypothetical protein COLAER_01138 [Collinsella aerofaciens ATCC
           25986]
 gi|133775734|gb|EBA39554.1| Hypothetical protein COLAER_01138 [Collinsella aerofaciens ATCC
           25986]
          Length = 286

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 135/287 (47%), Gaps = 16/287 (5%)

Query: 1   MTMN--NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           MT +      + + +L  + +  K  +GQNFL+D +++++I E +       V+E+G G 
Sbjct: 1   MTTSPLANPTATRELLEEFGLATKHRLGQNFLIDNHVIERICELAELAGDERVLEVGPGC 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNIS 116
           G LT  LL   A  V  IE D +  P+L   ++ + N    I  DALKV  E+       
Sbjct: 61  GTLTLALLQEAA-CVTSIEADPELEPVLDAHAADYAN-FRFIMGDALKVGPEQIEQAAGG 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P   +ANLPYN+   ++  +       P  +   ++ QKEV +RI A   +  YG  + 
Sbjct: 119 EPTVFVANLPYNVAATIILQFFQTM---PALKRAVVMVQKEVADRIAAVPGNKTYGGYTA 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRR 234
             G   + T  F++ P  F P+P V S V+         P     E + ++   AF +RR
Sbjct: 176 KLGLYAQVTGRFEVPPRCFMPAPHVDSAVVRIDRVDGVVPEGLDREFVARVIDAAFAQRR 235

Query: 235 KTLRQSLKRLG-GENLLHQA----GIETNLRAENLSIEDFCRITNIL 276
           KT+R S+   G  +++L  A    GI    RAE L + DF R+   L
Sbjct: 236 KTIRNSMSANGFAKDVLDAAIETCGIAPTTRAETLDVADFVRLAQEL 282


>gi|15644188|ref|NP_229237.1| dimethyladenosine transferase [Thermotoga maritima MSB8]
 gi|27151616|sp|Q9X1F1|RSMA_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|4982002|gb|AAD36507.1|AE001795_10 dimethyladenosine transferase [Thermotoga maritima MSB8]
          Length = 279

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 135/261 (51%), Gaps = 18/261 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  Y +  KK++GQ FL D  I K+I +++       V+EIGAG G LT+ L   GAR V
Sbjct: 26  LKKYGVRLKKHLGQVFLSDDRIAKRIVKAAELTPEDVVVEIGAGAGTLTEELAKTGAR-V 84

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           I  E D+   PIL++  S++PN +E+  +D LK       N+      ++N+PYNI   L
Sbjct: 85  IAYEIDESLAPILQERLSKYPN-VELRFEDFLK-----AKNVPEGAICVSNIPYNITGPL 138

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +   I        ++   ++ QKEVGERI A+     YG LSV+     +   +FD+S  
Sbjct: 139 MEKIIEWK-----FKRAIVMIQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 193

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P+P+V STV+       P+    E  KK     F K+RKTL+ +L+      +    
Sbjct: 194 CFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNLRPFLS--IFE-- 247

Query: 254 GIETNLRAENLSIEDFCRITN 274
           G++ + RAE L++E+   +  
Sbjct: 248 GVDLSRRAEQLTVEEIVELYE 268


>gi|319796617|ref|YP_004158257.1| dimethyladenosine transferase [Variovorax paradoxus EPS]
 gi|315599080|gb|ADU40146.1| dimethyladenosine transferase [Variovorax paradoxus EPS]
          Length = 254

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 126/260 (48%), Gaps = 12/260 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            I +K  GQ+FL D  I+  I        G  ++EIG G   LTQ L+    R + VIE 
Sbjct: 3   HIARKRFGQHFLSDGGIIDAIVHEIAPQPGDAMVEIGPGLAALTQPLVERLGR-LTVIEL 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136
           D+     L++    HP +LE+I+ D LKVDF +        P+R++ NLPYNI T +LF+
Sbjct: 62  DRDLAKRLRE----HP-QLEVIESDVLKVDFAELAAKAAPKPLRVVGNLPYNISTPILFH 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +    +         + QKEV +R+ A+  +  Y RLSV+  WR     +  + P  F 
Sbjct: 117 LLG---FAHLITDQHFMLQKEVIDRMVARPATSDYSRLSVMLQWRYDMQNVLFVPPESFD 173

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S V+  +P   P       L +I Q AF +RRK LR +L +    +       +
Sbjct: 174 PPPRVDSAVVRMVPLAQPPVVDAARLGEIVQVAFSQRRKILRHTLGKWLETHGFEG-EFD 232

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE + + ++  +   +
Sbjct: 233 PQRRAEEVPVAEYVALAQAV 252


>gi|114565628|ref|YP_752782.1| rRNA (adenine-N(6)-)-methyltransferase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114336563|gb|ABI67411.1| dimethyladenosine transferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 294

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 146/290 (50%), Gaps = 19/290 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    ++  ++ Y I P+K  GQNFL+D NIL+KIA          ++EIG G G 
Sbjct: 1   MKRTDSLSGIRYYMNKYGIHPRKKWGQNFLVDGNILRKIAHLCNPGCEKLLVEIGPGLGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116
           LT+ L  + ++ V+ IE D      L +      N + ++  D L++D E+  + +    
Sbjct: 61  LTRELAGI-SKGVLAIEIDFGLREALAESLQGL-NNIRLLFADILQIDLEEELSKAFGGE 118

Query: 117 --SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
             S  ++ AN+PYNI T ++F  +   +     ES TL+ QKEV  RI A  +S  YG L
Sbjct: 119 DISGYKVCANIPYNITTPIIFKLLETCSQ---MESATLMMQKEVASRILASPDSKEYGLL 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGK 232
           +++T +  +A  +  +S + F+P P+V S+VI   P            + KK+ + +F K
Sbjct: 176 TLMTAYYAEAEYLMPVSRNCFYPRPEVDSSVIQLRPIKGKRVQVKDESNFKKLLRVSFQK 235

Query: 233 RRKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRITNIL 276
           RRKT+      L          +L+  GI+   R ENLSIE F  I++ L
Sbjct: 236 RRKTILNICVDLFSVEKAEIHSILNSLGIDPKSRPENLSIEQFALISDTL 285


>gi|325848863|ref|ZP_08170373.1| dimethyladenosine transferase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480507|gb|EGC83569.1| dimethyladenosine transferase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 282

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 139/284 (48%), Gaps = 13/284 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       ++K I   Y     K +GQNFL+D N + KI + S    G  ++EIG G G 
Sbjct: 1   MKKLYSPKTIKLIQDLYGFKFTKSLGQNFLVDKNFVDKIIDLSEVS-GENILEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           ++Q +     +K++VIE D+   PILKD   +  N ++II  D LK D +K         
Sbjct: 60  ISQEMAKTC-KKLVVIEIDKTLIPILKDNLGEFSN-VDIINADILKTDLKKIIKENFSGE 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             ++++NLPY I T ++      D      + +T++ QKEV +R+ A +    Y  LSV 
Sbjct: 118 DFKVVSNLPYYITTPIIEKLFEEDLP---CKDMTIMVQKEVADRMKADEKEKDYSSLSVF 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             + ++ T  F +   VF P PK+ S V+     L      + SL  I +  F KRRKT+
Sbjct: 175 IKYYSEITGQFKVPKSVFMPQPKIDSQVLKLNLRLYDEDVDVNSLFNIVRAGFNKRRKTI 234

Query: 238 RQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277
             SL  +  +     +     ++ NLRAENLS++DF  I N   
Sbjct: 235 LNSLSSVIEKEDLKKIFENLSLKENLRAENLSLDDFINIANEYE 278


>gi|182438149|ref|YP_001825868.1| dimethyladenosine transferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326778799|ref|ZP_08238064.1| Ribosomal RNA small subunit methyltransferase A [Streptomyces cf.
           griseus XylebKG-1]
 gi|226732628|sp|B1VUF9|RSMA_STRGG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|178466665|dbj|BAG21185.1| putative dimethyladenosine transferase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326659132|gb|EGE43978.1| Ribosomal RNA small subunit methyltransferase A [Streptomyces cf.
           griseus XylebKG-1]
          Length = 291

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 126/279 (45%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++      TV+E+G G G+LT  LL
Sbjct: 12  PADIRDLAATLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDTVVEVGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V+ +E D      L    +    +  +R  ++  DA+ V         +P  ++
Sbjct: 72  E-AADRVVAVEIDDVLAAALPATVQARMPERADRFALVHSDAMLVTE---LPGPAPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L   +      P  E   ++ Q EV +R+ A+  +  YG  SV   W  
Sbjct: 128 ANLPYNVAVPVLLTMLER---FPSIERTLVMVQSEVADRLAARPGNKVYGVPSVKANWYA 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
                  I  +VF+P+P V S ++  +    PI        +  +   AF +RRKTLR +
Sbjct: 185 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRTEPIATTASRAEVFAVVDAAFAQRRKTLRAA 244

Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274
           L          E  L  AGI    R E L++E+F  I  
Sbjct: 245 LSGWAGSAPAAEAALVAAGISPQARGEALTVEEFAAIAE 283


>gi|212278087|gb|ACJ23058.1| KsgA [Neisseria gonorrhoeae]
          Length = 259

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 11/254 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234

Query: 257 TNLRAENLSIEDFC 270
              RAE+++ E  C
Sbjct: 235 PQDRAEHIAPEKIC 248


>gi|145593340|ref|YP_001157637.1| dimethyladenosine transferase [Salinispora tropica CNB-440]
 gi|145302677|gb|ABP53259.1| dimethyladenosine transferase [Salinispora tropica CNB-440]
          Length = 289

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 15/279 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT       ++ + +   + P K +GQNF+ D N +++I  ++G      V+E+G G G+
Sbjct: 1   MTGLLGPAEIRDLAARLGVAPTKRLGQNFVHDPNTVRRIVTTAGLTAQDVVLEVGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNIS 116
           L  + L   A  V  +E D      L + +++H      RL + + DAL+V   +  +  
Sbjct: 61  L-TLALLPAAAHVHAVEIDPVLAAALPETAARHAGPAADRLSVHRADALRVTAGQLAD-P 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           +P  ++ANLPYN+   ++ + ++     P      ++ QKEV +R+ A   S  YG  SV
Sbjct: 119 APTALVANLPYNVAVPVVLHLLAE---LPTLRHGLVMVQKEVADRLVAGPGSRVYGVPSV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRK 235
              W  +      + P+VF+P P V S ++ F    +P +    E +  +   AF +RRK
Sbjct: 176 KLAWYARVHAAGKVPPNVFWPVPNVDSGLVAFTRRESPGVGVSRERIFAVVDAAFAQRRK 235

Query: 236 TLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDF 269
           TLR +L            +L  AG++   R E L++E F
Sbjct: 236 TLRAALAGWAGGADRAAAVLTAAGVDPGARGEALTVEQF 274


>gi|312138652|ref|YP_004005988.1| rRNA dimethyladenosine transferase ksga [Rhodococcus equi 103S]
 gi|311887991|emb|CBH47303.1| rRNA dimethyladenosine transferase KsgA [Rhodococcus equi 103S]
          Length = 292

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 19/282 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +   + + P K +GQNF+ D N +++I   +G     TV+E+G G G+LT  LL
Sbjct: 16  PAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVTVAGVGPEDTVLEVGPGLGSLTLALL 75

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            +   +V+ +E D +    L     D + +  +RL ++  DA++V  +     + P  ++
Sbjct: 76  DV-VDRVVAVEIDPKLAARLPATVADRAPELVDRLTVVGADAMRVMPDDV--PAEPTAVV 132

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L +  +     P   +  ++ Q EV +R+ A   S  YG  SV   +  
Sbjct: 133 ANLPYNVAVPVLLHLFAE---FPSLRTALVMVQAEVADRLAATPGSKVYGVPSVKANFFG 189

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC---LESLKKITQEAFGKRRKTLR 238
                  +   VF+P P+V S ++    +   P P        +  +   AF +RRKTLR
Sbjct: 190 TVKRAGHVGRAVFWPVPQVESGLVRIDRYEQAPWPIDADHRRKVFAVIDAAFAQRRKTLR 249

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
            +L    G     E  L  AGIE + R E L    F R+ N+
Sbjct: 250 AALAGWAGSPVEAERRLVAAGIEPSTRGEKLDAAAFVRLANV 291


>gi|74318358|ref|YP_316098.1| dimethyladenosine transferase [Thiobacillus denitrificans ATCC
           25259]
 gi|119365860|sp|Q3SGF7|RSMA_THIDA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|74057853|gb|AAZ98293.1| ribosomal RNA 16S rRNA dimethylase [Thiobacillus denitrificans ATCC
           25259]
          Length = 255

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 95/261 (36%), Positives = 132/261 (50%), Gaps = 11/261 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P+K  GQNFL+D  I+  I  +     G TV+EIG G G LT+ LL      +  +E 
Sbjct: 2   HTPRKRFGQNFLIDDGIVHAIVNAIHPQAGETVVEIGPGLGALTRPLLERLPH-LHAVEL 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L+   +  P RL +   DALK D   F ++   +RI+ NLPYNI T LLF+ +
Sbjct: 61  DRDIIARLRR--AWPPERLTLHAGDALKFD---FGSLGDDLRIVGNLPYNISTPLLFHLL 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               + P    +  + QKEV ER+ A   +  YGRLS++   R     + D+ P  F P 
Sbjct: 116 E---FAPRIRDMHFMLQKEVVERMVASPATADYGRLSIMLQRRFHMEWLLDVPPTAFDPP 172

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP     +P   E+L  ++   AF +RRKTLR +L  L         GI+
Sbjct: 173 PKVESAVVRLIPKSTAEVPSVDEALFARVVAAAFAQRRKTLRNTLSALMRPEDFVALGID 232

Query: 257 TNLRAENLSIEDFCRITNILT 277
             LRAE L + D+  IT  L 
Sbjct: 233 PGLRAEALHVADYEAITAYLA 253


>gi|309812813|ref|ZP_07706551.1| dimethyladenosine transferase [Dermacoccus sp. Ellin185]
 gi|308433230|gb|EFP57124.1| dimethyladenosine transferase [Dermacoccus sp. Ellin185]
          Length = 297

 Score =  252 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 18/274 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
            +  ++ +   + + P K  GQNF++D N ++KI   +G     TV+E+G G G+LT  L
Sbjct: 19  SAADIRELAERHGVRPTKTWGQNFVIDPNTVRKIVRLAGVGADDTVVEVGPGLGSLTLAL 78

Query: 66  LTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           L   A  + V+E D      L    +  + QH ++L ++Q DA+ VD  +     +P  +
Sbjct: 79  LPAVAH-LSVVEVDPNLAAQLPATVERFAPQHASKLNVVQADAMTVDSLE----PAPTAL 133

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   ++ N++      P  + + ++ Q EV +R+ A+  S  YG  SV   W 
Sbjct: 134 VANLPYNVSVPVVLNFLE---HFPSLQRVLVMVQLEVAQRLAAEPGSKVYGVPSVKAAWY 190

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQS 240
               +   +  +VF+P+P V S ++  +    P      + +      AF +RRKTLR +
Sbjct: 191 ADVRLADRVGRNVFWPAPNVDSGLVSLVRRDPPTTEATRAQVFACIDAAFAQRRKTLRAA 250

Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDF 269
           L          E  L  AGI+   R E L I++F
Sbjct: 251 LAGWAGGADRAEAALVAAGIDPRTRGERLGIDEF 284


>gi|149927947|ref|ZP_01916197.1| dimethyladenosine transferase [Limnobacter sp. MED105]
 gi|149823386|gb|EDM82619.1| dimethyladenosine transferase [Limnobacter sp. MED105]
          Length = 256

 Score =  252 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 122/262 (46%), Gaps = 11/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K   KK  GQ+FL D ++L  +          T++EIG G G LT  LL      + VIE
Sbjct: 2   KHQAKKRFGQHFLTDQSVLSNLIGEMRPRADDTLVEIGPGLGALTFWLLK-AVNHLQVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+       ++L + + D LK DF +     +P R++ NLPYNI + +LF  
Sbjct: 61  IDRDLAEKLRT--GNWKDKLTVHEVDVLKFDFRQL---PAPFRVVGNLPYNISSPILFAL 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +              + QKEV +R+ A   +  YGRLSV+         +FD+ P  F P
Sbjct: 116 LEVADQ---VIDQHFMLQKEVIDRMVAAPKTSDYGRLSVMLQAYYDMDHLFDVPPECFDP 172

Query: 198 SPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P+V S ++  +P           E   ++   AF +RRK LR +   +  E++   AGI
Sbjct: 173 PPRVMSAIVRMVPKQAQERAAIPGEIFSRVVSTAFSQRRKMLRNTWANVVPEHIASAAGI 232

Query: 256 ETNLRAENLSIEDFCRITNILT 277
               RAE ++ E F ++  +L 
Sbjct: 233 ALTARAEEIAPEQFVQVAQMLA 254


>gi|262201474|ref|YP_003272682.1| dimethyladenosine transferase [Gordonia bronchialis DSM 43247]
 gi|262084821|gb|ACY20789.1| dimethyladenosine transferase [Gordonia bronchialis DSM 43247]
          Length = 305

 Score =  252 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 131/281 (46%), Gaps = 19/281 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K +GQNF+ D N +++I   SG      V+E+G G G+LT  LL
Sbjct: 31  PAQIRQLAAEVGVRPTKTLGQNFVHDANTVRRIVAESGVGADDVVLEVGPGLGSLTLALL 90

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V+ +E D      L     + ++      E+I  DAL+V  +      +P  ++
Sbjct: 91  EQ-AGRVVAVEIDPVLAQRLPRTIAERAAARQGDFEVITADALRVTRDDL--PVAPTALV 147

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + ++     P   +  ++ Q EV +R+ A+  S  YG  SV   +  
Sbjct: 148 ANLPYNVAVPVLLHLLA---VFPEIRTALVMVQAEVADRLAAEPGSRTYGVPSVKARYHG 204

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQ 239
                  +   VF+P PKV S ++      +  P   E   ++  +   AF +RRKT+R 
Sbjct: 205 TVRRAGAVGRSVFWPEPKVESGLVRIE-RTDTYPVDDELRGAVFAVVDAAFAQRRKTMRS 263

Query: 240 SLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           +L    G     E  L  AGI+  +R E L + DF R+   
Sbjct: 264 ALAGWAGSPAEAERRLRAAGIDPGIRGERLGVADFVRLAQT 304


>gi|306817223|ref|ZP_07450970.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35239]
 gi|304650025|gb|EFM47303.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35239]
          Length = 303

 Score =  252 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 137/299 (45%), Gaps = 28/299 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT    +  ++ +     I P K  GQNF+ D   +++IA  +       V+EIG G G+
Sbjct: 1   MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSPAEVVLEIGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVD----FEKFF 113
           LT  LL  GAR VI +E D +    L      H   +E   +   DAL +D         
Sbjct: 61  LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+ ++ANLPYN+ T +L + +      P      ++ Q EV +R+ A+     YG 
Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL----------- 222
            SV   W   A   F +S  VF P P V STV+ F      +   +ESL           
Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236

Query: 223 -KKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
             +    AFG RRKTLRQSL RL G       LL +AGI+  LRAENL + DF  +  +
Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295


>gi|308176575|ref|YP_003915981.1| dimethyladenosine transferase [Arthrobacter arilaitensis Re117]
 gi|307744038|emb|CBT75010.1| dimethyladenosine transferase [Arthrobacter arilaitensis Re117]
          Length = 295

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 18/276 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     I P K +GQNF++D N +++I  ++      TV+E+G G G+LT  ++
Sbjct: 12  ATEIRRLAEELGIRPTKTLGQNFVIDGNTIRRIVAAAKVDPSETVLEVGPGLGSLTLGIM 71

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH-PNR---LEIIQDDALKVDFEKFFNISSPIRII 122
              A KV+ +E D      L    ++  P R   L +I  DA+KV          P  ++
Sbjct: 72  DAAA-KVVAVEIDPPLAKRLPQTMAEFRPGREDDLTVILSDAMKVTE----LPGEPTSLV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + +      P   +  ++ Q EV +R+ A   +  YG  SV   W  
Sbjct: 127 ANLPYNVAVPVVLHLLE---HFPSIRNGLVMVQDEVADRMAATPGNKIYGVPSVKGAWYG 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSL 241
                  I  +VF+P+PK+ S ++ F    +         +  I   AF +RRKTLR +L
Sbjct: 184 TMRKAGVIGMNVFWPAPKIHSGLVGFTRDKDRSDAPDRREVFAIIDAAFAQRRKTLRAAL 243

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272
               G     E +L  AGI+   R E L IE +  I
Sbjct: 244 SGWAGSGARAEQILVAAGIDPKERGEKLDIEQYIDI 279


>gi|158334916|ref|YP_001516088.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017]
 gi|189028799|sp|B0CC89|RSMA_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|158305157|gb|ABW26774.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017]
          Length = 269

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 75/268 (27%), Positives = 131/268 (48%), Gaps = 9/268 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L    +L++I  ++       ++EIG G G LT+ LL   A+ V+ +E D
Sbjct: 3   RPRKRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLAQ-AQSVVSVELD 61

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +     L+   +   N   +++ D L +D         P +++AN+PYNI + +L   + 
Sbjct: 62  RDLCKSLRHTFNDQEN-FTLLELDFLNLDVAAELTEPLPNKVVANIPYNITSPILSKLLG 120

Query: 140 ADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
               P  P +E++ LL QKEV +R+ A+  S  +  LSV + +     ++  +    F P
Sbjct: 121 RIDAPAQPVYETVVLLIQKEVADRLVAEPGSKIFNGLSVRSQYLADCELICPVPASAFKP 180

Query: 198 SPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA--- 253
           +PKV S V+   P   P P    + L  + +  F  RRK LR +LK L   + L +    
Sbjct: 181 APKVESAVVRLTPRPYPQPVQNPQWLSTLLKVGFSSRRKMLRNNLKSLVDRDQLSECLNT 240

Query: 254 -GIETNLRAENLSIEDFCRITNILTDNQ 280
             I    RAE+LS+  +  +++ +  +Q
Sbjct: 241 LNISLQARAEDLSVTQWIALSDSVHPSQ 268


>gi|312889917|ref|ZP_07749461.1| dimethyladenosine transferase [Mucilaginibacter paludis DSM 18603]
 gi|311297449|gb|EFQ74574.1| dimethyladenosine transferase [Mucilaginibacter paludis DSM 18603]
          Length = 259

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 89/266 (33%), Positives = 136/266 (51%), Gaps = 14/266 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  KK++GQ+FL D NI +KI  S       T V+E+G G G L+  LL     +  +I+
Sbjct: 4   VRAKKHLGQHFLTDKNIAEKIVNSLKLHGNYTQVLEVGPGMGILSDFLLQKTDYQTYLID 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D + +  L+    Q  +RL  I  D L++DF K F  +SP  II N PYNI +++LF  
Sbjct: 64  IDTESYQFLQKKYPQLGSRL--INADFLEMDFGKTF--TSPFAIIGNFPYNISSQILFKV 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +           +  +FQKEV ER +A+  S  YG LSV      K   +F +   VF P
Sbjct: 120 LDNRQQ---VLEVVGMFQKEVAERCSAKPGSKEYGILSVFLQAYYKVEYLFTVKAGVFNP 176

Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    +  P + C  +   ++ +  F +RRKTLR ++  +  +  +     +
Sbjct: 177 PPKVLSAVIRLTRNDTPELNCDEKLFWQLVKAGFNQRRKTLRNAISSVIPKEKITD---D 233

Query: 257 T--NLRAENLSIEDFCRITNILTDNQ 280
              +LRAE LS+ DF  +TN ++  +
Sbjct: 234 PLLDLRAERLSVADFVTLTNKVSAER 259


>gi|188996789|ref|YP_001931040.1| dimethyladenosine transferase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|254807892|sp|B2V963|RSMA_SULSY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|188931856|gb|ACD66486.1| dimethyladenosine transferase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 258

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 8/262 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI PKK +GQ+FL+  N+++KI +         ++EIG G G LT+ +L    + +  IE
Sbjct: 3   KIKPKKRLGQHFLISKNVIEKIVDEINISKEDIIVEIGPGTGALTEEILLRNPKILYAIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D    P+L++  S + N  ++I+ D   V+  +  +    I+++ NLPYN+ + ++   
Sbjct: 63  IDTSVHPVLEEKFSIYSN-FKLIKSDFFDVNLYELISDEEKIKLVGNLPYNVASLMI--- 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         E    + QKEV E++ A+  +  Y  LSV          +  +    F P
Sbjct: 119 IDCAFKLDILEFCVFMIQKEVAEKLIAKPKTKDYTFLSVFIQTFFDIKYVMSVPARFFNP 178

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            PKVTS V+   P  N     ++  K      F  RRK +    K    E +L++AGI  
Sbjct: 179 PPKVTSAVVKLTPKQNIAINNVKKYKNFISHLFQNRRKMI----KSKIEEEMLNKAGISP 234

Query: 258 NLRAENLSIEDFCRITNILTDN 279
           NLRAE LS+EDF RI  ++ ++
Sbjct: 235 NLRAEELSVEDFIRIFGVVEND 256


>gi|307324292|ref|ZP_07603500.1| dimethyladenosine transferase [Streptomyces violaceusniger Tu 4113]
 gi|306890023|gb|EFN21001.1| dimethyladenosine transferase [Streptomyces violaceusniger Tu 4113]
          Length = 289

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 128/290 (44%), Gaps = 23/290 (7%)

Query: 1   MTMNNK-----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55
           M+  +         ++ + +   + P K  GQNF++D N +++I  ++G      V+E+G
Sbjct: 1   MSSTDPDVLLGPADIRALAARLGVRPTKQRGQNFVIDANTVRRIVRTAGVRPEDVVVEVG 60

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEK 111
            G G+LT  LL   A +V  +E D      L    +       +   ++  DAL+V    
Sbjct: 61  PGLGSLTLALLE-AADRVTAVEIDDVLAAALPATVEARLPHRADHFALVHHDALRVTE-- 117

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
                +P  ++ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  Y
Sbjct: 118 -LPGPAPTALVANLPYNVAVPVLLHMLGR---FPTIERTLVMVQAEVADRLAAPPGSKVY 173

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEA 229
           G  SV   W         I  +VF+P+P V S ++  I    P+      E +  +   A
Sbjct: 174 GVPSVKAAWYAHVKRAGAIGRNVFWPAPNVDSGLVSLIRRDEPLRTTATREEVFAVVDAA 233

Query: 230 FGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           F +RRKTLR      +      E  L  AG+    R E+L++EDF  I  
Sbjct: 234 FAQRRKTLRAALAGWAGSAGAAEEALKAAGVSPQARGESLTVEDFAAIAE 283


>gi|58584664|ref|YP_198237.1| dimethyladenosine transferase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|81311641|sp|Q5GSM9|RSMA_WOLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|58418980|gb|AAW70995.1| Dimethyladenosine transferase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 261

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 102/264 (38%), Positives = 146/264 (55%), Gaps = 8/264 (3%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  + + PKK +GQNF+L   I K+I   +G+L+   VIEIG G G LT+ +L    + +
Sbjct: 1   MKKFLLKPKKSLGQNFILSSEITKRIVVLAGNLEDFNVIEIGPGYGALTKEILAHNPKSL 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           + IEKD         + ++H  +  I++ DAL V  E+   I  P+++IANLPYNI   L
Sbjct: 61  LAIEKDSNLVKCHDQLLNEHQGKFRIVEADALYVVEEEL--IERPVKVIANLPYNISLAL 118

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
              W++       + + TL+FQKEV +RI A+ NS  YG LSVL+         FDI P 
Sbjct: 119 FLKWLNK---IKLFTTFTLMFQKEVADRIIARPNSKDYGSLSVLSQLLCDIRREFDIEPK 175

Query: 194 VFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLL 250
            FFP PKV S+VI   P         LE+L K+T+  F +RRK LR SL+ +    E  L
Sbjct: 176 EFFPRPKVYSSVITVKPLPTQRFAVNLEALTKLTRAVFAQRRKMLRNSLQNVTNRTETAL 235

Query: 251 HQAGIETNLRAENLSIEDFCRITN 274
             A +  N R +NL++E FC + N
Sbjct: 236 ENAKLSGNERPKNLTVEQFCLLAN 259


>gi|228471196|ref|ZP_04056009.1| dimethyladenosine transferase [Porphyromonas uenonis 60-3]
 gi|228307011|gb|EEK16093.1| dimethyladenosine transferase [Porphyromonas uenonis 60-3]
          Length = 271

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 126/258 (48%), Gaps = 7/258 (2%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KKY+GQ+FL DL   ++IA+S     G  ++E+G G G LTQ LL  G   + VI+ 
Sbjct: 4   VRAKKYLGQHFLTDLGAAQRIADSVADYLGTPILEVGPGMGVLTQPLLEAG-HDLQVIDI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136
           D +    L     Q      II+ D LK+  E+       +P  +I N PYNI +++ F 
Sbjct: 63  DHESIEYLHQHFPQLSQEGRIIEGDFLKLPAEELIPGRADTPFVVIGNYPYNISSQIFFR 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    +    Q EV +R+ A      YG LSVL         +F +S   F 
Sbjct: 123 ILELRERIPAVAGM---LQHEVAQRLCASPGGRDYGILSVLLQCWYDCDYLFKVSKRDFN 179

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV   V+    +    +PC   + K++ + AFG+RRK LR +L+ L G+   +    
Sbjct: 180 PPPKVDGGVMIARRNGRTSLPCDETNFKRVVKTAFGQRRKMLRNALQSLFGKEFPYADHD 239

Query: 256 ETNLRAENLSIEDFCRIT 273
              LRAE LS+EDF  +T
Sbjct: 240 IFTLRAERLSVEDFIGLT 257


>gi|260591378|ref|ZP_05856836.1| dimethyladenosine transferase [Prevotella veroralis F0319]
 gi|260536744|gb|EEX19361.1| dimethyladenosine transferase [Prevotella veroralis F0319]
          Length = 278

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 133/266 (50%), Gaps = 13/266 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL+I K+IA++  +   I V+EIG G G LTQ L+    R V  +E 
Sbjct: 15  VKPKKNLGQHFLTDLSIAKRIADTVDACPEIPVLEIGPGMGVLTQYLVE-KPRVVKAVEI 73

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +   +      I+ +D L++D  + F+      +  N PY+I +++ F  +
Sbjct: 74  DAESVAYLYERFPKLHEN--ILGEDFLQMDLTQIFD-GKQFVLTGNYPYDISSQIFFKML 130

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ A   S  YG LSVL         +F +  +VF P 
Sbjct: 131 DYKDLIP---CCTGMIQREVALRMAAAPGSKAYGILSVLIQAWYDVEYLFTVDENVFNPP 187

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253
           PKV S VI    + +  I C  +  K++ +  F +RRK LR SL+++       +  ++ 
Sbjct: 188 PKVKSAVIRMTRNDVTDIGCNEQLFKRVVKTVFNQRRKMLRVSLRQIFNNGKPTDGFYEQ 247

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
            I    R E LSI  F ++TN++ + 
Sbjct: 248 DI-MTKRPEQLSIPQFVKLTNMVEEQ 272


>gi|313886609|ref|ZP_07820322.1| dimethyladenosine transferase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332300878|ref|YP_004442799.1| Ribosomal RNA small subunit methyltransferase A [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923965|gb|EFR34761.1| dimethyladenosine transferase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332177941|gb|AEE13631.1| Ribosomal RNA small subunit methyltransferase A [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 271

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 85/258 (32%), Positives = 124/258 (48%), Gaps = 7/258 (2%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KKY+GQ+FL D    ++IA+S     G  ++E+G G G LTQ LL  G   + VI+ 
Sbjct: 4   VRAKKYLGQHFLTDHGAAQRIADSVADYLGTPILEVGPGMGVLTQPLLEAG-HDLQVIDI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLFN 136
           D +    L     Q      II+ D LK+  E+     +  P  +I N PYNI +++ F 
Sbjct: 63  DHESIEYLHQHFPQLSQEGRIIEGDFLKLPAEELIPGRADMPFVVIGNYPYNISSQIFFR 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    +    Q EV +R+ A      YG LSVL         +F +S   F 
Sbjct: 123 ILELRERIPAVAGM---LQHEVAQRLCASPGGRDYGILSVLLQCWYDCDYLFKVSKRDFN 179

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV   V+    +    +PC   + K++ + AFG+RRK LR +L  L G+   +    
Sbjct: 180 PPPKVDGGVMIARRNSRTELPCDEANFKRVVKTAFGQRRKMLRNALMSLFGKEFPYADHE 239

Query: 256 ETNLRAENLSIEDFCRIT 273
              LRAE LS+EDF  +T
Sbjct: 240 IFTLRAERLSVEDFISLT 257


>gi|297587466|ref|ZP_06946110.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516]
 gi|297574155|gb|EFH92875.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516]
          Length = 283

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 15/286 (5%)

Query: 3   MNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M+ + H    +K IL  +     K +GQNFL+D N+++ I + S   +   VIEIG G G
Sbjct: 1   MSYRLHQPSYIKEILDKFGFKFSKALGQNFLIDGNLIENIIDFSDITEDDYVIEIGPGFG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            LT+ L+    + +  IE D +   +LK       N  +II +D LKVD  +  + +   
Sbjct: 61  TLTERLVD-KCKFLYSIEIDSRLMDVLKYTVGDRDN-FQIINEDVLKVDLNELNHGAKKF 118

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++ +      +    ES+T++ QKEV  R+ A   S  Y  LS+   
Sbjct: 119 KVVANLPYYITTPIIEHLF---NYRDIIESITVMIQKEVANRMVADVGSKDYASLSLFVK 175

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
             + A ++ +    VF P PKV S V++            E L+++ +  F KRRKT+  
Sbjct: 176 QNSDAKIILNAPKTVFMPQPKVDSAVVNMKLKKLDEDIDQELLRQLIRSGFSKRRKTIVN 235

Query: 240 SLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           S             + +L + G++ NLRAENLS+ED+  I   L +
Sbjct: 236 SFTSGFVNVDKDKLKAILQELGLKENLRAENLSLEDYKNIVKKLNN 281


>gi|118580905|ref|YP_902155.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379]
 gi|118503615|gb|ABL00098.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379]
          Length = 271

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 89/269 (33%), Positives = 134/269 (49%), Gaps = 14/269 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              P K +GQNFL+D NI+++I   +       V+E+G G G LT  L    AR ++++E
Sbjct: 4   GRRPLKSLGQNFLVDRNIVERIIRGAALEPDDQVLEVGPGRGALTAHLSERVAR-LLLVE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFN 136
            D      L +   ++  R+ +I  D L VD E          +++ANLPYNI T++LF 
Sbjct: 63  YDHALADELSERYRENQ-RVRVIDGDILAVDLEALLEDGDKRWKVVANLPYNISTQVLFR 121

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           ++   +       + L+ QKEVG+R+TA  +   YG  +V+ G        F + P  F 
Sbjct: 122 FLELRS---RLSRMLLMLQKEVGDRLTALPDCSDYGVTTVILGLWFDIRREFVVPPGCFH 178

Query: 197 PSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKR------LGGEN 248
           P P+V S V+ F P   P       E  +++ + AF  RRKTL   LKR       G   
Sbjct: 179 PRPRVDSVVLSFTPLDAPRAQVGDEEIFRRVVKCAFATRRKTLFNCLKRGELVAPDGVAE 238

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           LL   GI+   R E LS+E+F R++  L+
Sbjct: 239 LLESCGIDGRRRGETLSLEEFARLSRHLS 267


>gi|119356986|ref|YP_911630.1| dimethyladenosine transferase [Chlorobium phaeobacteroides DSM 266]
 gi|166221658|sp|A1BFM9|RSMA_CHLPD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119354335|gb|ABL65206.1| dimethyladenosine transferase [Chlorobium phaeobacteroides DSM 266]
          Length = 269

 Score =  251 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 88/268 (32%), Positives = 136/268 (50%), Gaps = 11/268 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K    H +I  KK +GQNFL D NI +KI   S +    T++EIG G G LT+ + T+ 
Sbjct: 2   IKVEYKHTEIAVKKKLGQNFLTDRNITRKIVTESETNPDDTILEIGPGFGALTREISTIT 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            R   V+EKD +    +++   +    L +I+ D L VD +K      P+R++ N+PY I
Sbjct: 62  PR-FTVVEKDPKLASFIRNEYPE----LTVIEGDFLTVDLKKIAGEK-PLRVLGNIPYAI 115

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + +LF  +          S TL+ Q EV  RITA+  +  YG L+V      +   +F 
Sbjct: 116 TSPILFKLLENR---HILLSATLMMQHEVALRITAKPRTKDYGILAVQMQAFCETKYLFR 172

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +   VF P P V S VI   P +N      E   +  + AF +RRKTL+ +LK+    + 
Sbjct: 173 VGRKVFRPQPGVDSAVISMKPKVNDPVSDREGFSRFVRCAFHQRRKTLQNNLKKTYELDR 232

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           +  + +    RAE LSI++F R+   + 
Sbjct: 233 VESSVL--KQRAEELSIDEFFRLFEQIR 258


>gi|257092443|ref|YP_003166084.1| dimethyladenosine transferase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257044967|gb|ACV34155.1| dimethyladenosine transferase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 260

 Score =  251 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 88/262 (33%), Positives = 129/262 (49%), Gaps = 9/262 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            + +K  GQ+FL+D  I+  I +         V+EIG G   LT  LL      + V+E 
Sbjct: 3   HVARKRFGQHFLVDRQIIDSIVDLVAVQRRDLVVEIGPGLAALTDPLLRRL-DHLHVVEI 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNW 137
           D+     L+  ++    RL I   DAL  DF +      + +RI+ NLPYNI T LLF+ 
Sbjct: 62  DRDMVARLR--AAYSAERLSIHAGDALAFDFGRLAAEAGAKLRIVGNLPYNISTPLLFHL 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                +      +  + Q+EV ER+ A   S  +GRLSV+  +R     + ++ P  F P
Sbjct: 120 ---AGFGDGVRDMHFMLQREVVERMVAAPGSGDFGRLSVMLQYRFVMEWLLEVPPESFNP 176

Query: 198 SPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P+V S V+  IP L  +           +   AF +RRK LR SLK L GE  L + G+
Sbjct: 177 PPRVHSAVVRLIPRLAGDLAADDEAQFAAVVATAFAQRRKMLRNSLKSLVGEARLAEFGV 236

Query: 256 ETNLRAENLSIEDFCRITNILT 277
               RAE+LS++D+ R+ N L 
Sbjct: 237 SPTCRAEDLSVDDYVRLANSLK 258


>gi|328950176|ref|YP_004367511.1| Ribosomal RNA small subunit methyltransferase A [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450500|gb|AEB11401.1| Ribosomal RNA small subunit methyltransferase A [Marinithermus
           hydrothermalis DSM 14884]
          Length = 277

 Score =  251 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 140/275 (50%), Gaps = 18/275 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
             +++ +L  Y +   K  GQNFL+D N+L  I  ++    G  V E+G G G LT+ L 
Sbjct: 11  PRTVRALLERYGLRADKRFGQNFLVDGNLLGVIVRTAQVRPGERVYEVGPGLGTLTRALA 70

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             GA KV  IEKDQ+  P+L++  +     + ++  DAL   +++   +      +ANLP
Sbjct: 71  EAGA-KVTAIEKDQRLLPVLEETLAGL--NVTVVPGDALAYPWDE---VPPDSLFVANLP 124

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI T LL   + A+     +  L +L QKEV +R+ A+  +  YG L++   +  +   
Sbjct: 125 YNISTPLLTAVLRANR----FRRLVVLVQKEVADRLAARPATEAYGLLTLRAQYHARVER 180

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG- 245
           + D  P  F+P P VTST++       P      +L ++ + AF +RRKTLR++L+  G 
Sbjct: 181 VRDFPPQAFYPQPNVTSTLVRLESKGVP---DDPALFRLVEAAFAQRRKTLRKNLEAAGY 237

Query: 246 ----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                   L   G++  +R E L +E F R+   L
Sbjct: 238 ARERVLAALSALGLDPRVRGEALDLEAFQRLKAAL 272


>gi|298373556|ref|ZP_06983545.1| dimethyladenosine transferase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274608|gb|EFI16160.1| dimethyladenosine transferase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 262

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/269 (36%), Positives = 140/269 (52%), Gaps = 14/269 (5%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           TILS  ++ PKKY GQ+FL DL I ++IAE+    +   ++EIG+G G LTQ LL     
Sbjct: 5   TILSVQRVTPKKYFGQHFLKDLRIAERIAETI-PDNIKNILEIGSGTGALTQFLLKKNDT 63

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            ++ IE D++    L     +H  +L + +DD L  DF++ F+   P  I+ N PYNI T
Sbjct: 64  NLLAIEIDKESCAYL----GEHYPQLRVFRDDFLTFDFDRIFD-DEPFGIVGNFPYNIST 118

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            +LF  +   +  PF+  +   FQKEV ERI A   +  YG  SVLT    +   +F +S
Sbjct: 119 EILFKVLDNRSRIPFFAGM---FQKEVAERICATHGNKVYGITSVLTQAFYRTEYLFTVS 175

Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             VF P PKV S VI         + C       I + AF +RRKT+R SLK    +   
Sbjct: 176 EQVFVPPPKVKSAVIRLTRKEQQTLDCNERLFFSIVKTAFNQRRKTMRNSLKTFNAD--- 232

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
             +    +LR E +S E F  IT ++ + 
Sbjct: 233 -LSDKTFDLRPEQISQEQFIEITKLIQNQ 260


>gi|194336270|ref|YP_002018064.1| dimethyladenosine transferase [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308747|gb|ACF43447.1| dimethyladenosine transferase [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 262

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 133/263 (50%), Gaps = 11/263 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H +I  KK +GQNFL D NI +KI  +SG+     ++EIG G G LT+ ++        
Sbjct: 8   KHTEIAVKKKLGQNFLTDRNITRKIVIASGATPQDNILEIGPGFGALTRAIMEFCPL-FT 66

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+EKD +    ++   S++P +L +I+ D L+ D     +   P++I+ N+PY+I T +L
Sbjct: 67  VVEKDHKLADFIR---SEYP-QLNLIEGDFLETDLAALAH-DKPLKILGNIPYSITTPIL 121

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +        + S TL+ Q EV  RI A  ++  YG L+V          +F +   V
Sbjct: 122 FKLLEHR---HTFFSATLMMQHEVAMRIVAHPSTKDYGILAVQMQAFCDVNYLFKVGRKV 178

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P V S V+   P  N      +  ++  + AF +RRKTL  +LK     NL   A 
Sbjct: 179 FRPQPGVDSAVLQMTPKNNVPLNDADGFRRFVRIAFHQRRKTLLNNLKESY--NLESVAN 236

Query: 255 IETNLRAENLSIEDFCRITNILT 277
               LRAE LS+EDF ++   L 
Sbjct: 237 HTLKLRAEALSVEDFFQLFRELK 259


>gi|311113076|ref|YP_003984298.1| dimethyladenosine transferase [Rothia dentocariosa ATCC 17931]
 gi|310944570|gb|ADP40864.1| dimethyladenosine transferase [Rothia dentocariosa ATCC 17931]
          Length = 312

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 131/279 (46%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   I P K +GQNF++D N +++I  ++   D  TV+EIG G G+LT  L 
Sbjct: 30  PQEIRDLAAQLGIRPTKTLGQNFVIDPNTIRRIVTAADITDDETVLEIGPGLGSLTLGLA 89

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
              AR V+ +E D      L    ++        + ++  DALKV         +P  ++
Sbjct: 90  D-AARHVVAVEIDPPLAQQLPHTIAKFRPDKAQNVNVVLMDALKVTE----LPHTPDALV 144

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L +  +     P      ++ Q EV +R+ A+  S  YG  SV   W  
Sbjct: 145 ANLPYNVAVPVLLHLFAQ---FPSICHALVMVQDEVADRLAAKPGSKIYGVPSVKASWYA 201

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
           +      I  +VF+P+PK+ S ++ F     P+     + +  +   AF +RRKTLR +L
Sbjct: 202 EVFKAGVIGKNVFWPAPKINSGLVGFSMRPQPLADIDRDEVFTVIDAAFAQRRKTLRAAL 261

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E +L +AGI    R E L I  + RI   
Sbjct: 262 ASWAGSGARAEAILTEAGITPTERGEKLDIHGYIRIAQA 300


>gi|324998153|ref|ZP_08119265.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudonocardia sp. P1]
          Length = 292

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 130/282 (46%), Gaps = 19/282 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF+ D N +++I +S+G      V+E+G G G+LT  LL
Sbjct: 12  PADVRVLADRLGLRPTKKLGQNFVHDANTVRRIVKSAGVGADDVVLEVGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFN------IS 116
            + AR V VIE D     +L     + +    +RL +   DA++V   +          +
Sbjct: 72  PVAAR-VHVIEIDPVLAELLPETVAERAPGLADRLTVTGADAMRVSAAELAADAGGARPA 130

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P  I+ANLPYN+   ++ + ++     P  E   ++ Q EV +R+ A   S  YG  S 
Sbjct: 131 DPTAIVANLPYNVAVPVILHLLAE---LPSLERGLVMVQAEVADRLAAGPGSRQYGAPSA 187

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
              W   A     +   VF+P P V S ++ F  H  P      +   + + AF +RRK 
Sbjct: 188 KLAWYADARRAGPVPRAVFWPVPGVDSGLLAFTRHDPPSGADRAATFAVIEAAFAQRRKA 247

Query: 237 LRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           LR +L    G        L  AGI+   RAE LS+ DF  + 
Sbjct: 248 LRGALAGWAGSPAAAETALRAAGIDPTTRAERLSVTDFAAVA 289


>gi|227876332|ref|ZP_03994445.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35243]
 gi|269976092|ref|ZP_06183091.1| dimethyladenosine transferase [Mobiluncus mulieris 28-1]
 gi|227843105|gb|EEJ53301.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35243]
 gi|269935685|gb|EEZ92220.1| dimethyladenosine transferase [Mobiluncus mulieris 28-1]
          Length = 303

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 137/299 (45%), Gaps = 28/299 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT    +  ++ +     I P K  GQNF+ D   +++IA  +       V+EIG G G+
Sbjct: 1   MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSSAEVVLEIGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVD----FEKFF 113
           LT  LL  GAR VI +E D +    L      H   +E   +   DAL +D         
Sbjct: 61  LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+ ++ANLPYN+ T +L + +      P      ++ Q EV +R+ A+     YG 
Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL----------- 222
            SV   W   A   F +S  VF P P V STV+ F      +   +ESL           
Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236

Query: 223 -KKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
             +    AFG RRKTLRQSL RL G       LL +AGI+  LRAENL + DF  +  +
Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295


>gi|17230721|ref|NP_487269.1| dimethyladenosine transferase [Nostoc sp. PCC 7120]
 gi|27151584|sp|Q8YS62|RSMA_NOSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|17132324|dbj|BAB74928.1| rRNA (adenine-N6,N6)-dimethyltransferase [Nostoc sp. PCC 7120]
          Length = 271

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 131/269 (48%), Gaps = 13/269 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P+K   Q++L     L  I +++       ++EIG G G LT+ LL    + ++ +E 
Sbjct: 2   VRPRKLFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLP-AVQSLVAVEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLL 134
           D+    +L     +  N L ++Q D L +D       F     P +++AN+PYNI   ++
Sbjct: 61  DRDLCELLAKQLGKKENFL-LLQGDFLTIDLAANLGSFPKFQKPNKVVANIPYNITGPII 119

Query: 135 FNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
              +   + P    ++S+ LL QKEV ER+ A+  S  +G LSV   +      + D+  
Sbjct: 120 EKLLGTISNPNLEPFDSIVLLIQKEVAERLYAKSGSRTFGALSVRVQYLADCEFICDVPA 179

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248
             F P PKV S V+   P    IP    + L+ + +  FG +RK LR +L+ +   +   
Sbjct: 180 SAFHPPPKVDSAVVRLRPRQIEIPVNDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLS 239

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276
            LL Q  I    RAE++S + + ++ N+L
Sbjct: 240 QLLEQLNINPQARAEDISTQQWVKLANLL 268


>gi|167835491|ref|ZP_02462374.1| dimethyladenosine transferase [Burkholderia thailandensis MSMB43]
          Length = 275

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 119/262 (45%), Gaps = 13/262 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-- 72
            H     +K  GQNFL+D  ++  I  +     G  ++EIG G G LT  ++   A    
Sbjct: 6   QHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPDS 65

Query: 73  -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNI 129
            +  +E D+     LK    +    LE+   DAL  DF           +RII NLPYNI
Sbjct: 66  PLHAVELDRDLIGRLKARFGEL---LELHAGDALAFDFGSLARPGDQPSLRIIGNLPYNI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF+ ++   + P       + Q EV ER+ A+  +  + RLSV+  +R     + D
Sbjct: 123 SSPLLFHLMA---FAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYAMDKLID 179

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P PKV S ++  IPH            L ++   AF +RRK LR +L      
Sbjct: 180 VPPESFQPPPKVDSAIVRMIPHAPHELPAVDPSVLGEVVTAAFSQRRKMLRNTLGGYRDL 239

Query: 248 NLLHQAGIETNLRAENLSIEDF 269
                 G +   RAE++ ++++
Sbjct: 240 VDFDALGFDLARRAEDVGVDEY 261


>gi|119511388|ref|ZP_01630500.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414]
 gi|119463933|gb|EAW44858.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414]
          Length = 275

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 131/275 (47%), Gaps = 14/275 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           I P+K   Q++L     L  I +++        V+EIG G G LT+ LL L  R ++ +E
Sbjct: 2   IKPRKSFAQHWLKSEKALDAIIKAAECHQSDDRVLEIGPGTGILTRRLLPL-VRSLVAVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRL 133
            D      L     +  N L ++Q D L +D       F N   P +++AN+PYNI   +
Sbjct: 61  IDFDLCKQLAKQLGKKENFL-LLQGDFLTLDLPSHLAPFPNFQQPNKVVANIPYNITGPI 119

Query: 134 LFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +   +   A+  P  ++S+ LL QKEV +R+ A   S  +G LSV   +      +  + 
Sbjct: 120 IEKLLGTIANPNPEPFDSIVLLVQKEVADRLYAHPGSRTFGALSVRVQYLADCEFICTVP 179

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN-- 248
              F+P PKV S V+   P     P       + + +  F  +RK LR +L+ +   +  
Sbjct: 180 AGAFYPPPKVDSAVVRLRPRTIETPALNPRKFENLVKLGFSAKRKMLRNNLQSVVERDRL 239

Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             LL Q  I   +RAE+LS++ + R+ N LT N +
Sbjct: 240 THLLEQLEINPQVRAEDLSVQQWVRLANQLTVNTE 274


>gi|303236809|ref|ZP_07323388.1| dimethyladenosine transferase [Prevotella disiens FB035-09AN]
 gi|302482977|gb|EFL45993.1| dimethyladenosine transferase [Prevotella disiens FB035-09AN]
          Length = 266

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 12/263 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DLNI K+IA++      I V+EIG G G LTQ L+    R+V  +E 
Sbjct: 4   VKPKKNLGQHFLTDLNIAKRIADTVDECPDIPVLEIGPGMGVLTQYLVE-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +       R  I+ +D L++  E  F       +  N PY+I +++ F  +
Sbjct: 63  DAESVAYLNEKFPTL--RENILGEDFLRMQLENVFE-GRKFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ AQ  +  YG LSVL         +F +  +VF P 
Sbjct: 120 DYKDLIP---CCTGMIQREVALRMAAQPGNKTYGILSVLMQAWYNVEYLFTVDENVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQAG 254
           PKV S VI    + +  + C  +  K++ +  F +RRK LR SL+++         ++  
Sbjct: 177 PKVKSAVISLTRNDVTELGCDEKLFKRVVKTVFNQRRKMLRVSLRQIFTTKPREGFYEQD 236

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           I    R E L+I  F ++TN++ 
Sbjct: 237 I-MTKRPEQLTIAQFVKLTNMVE 258


>gi|307701523|ref|ZP_07638541.1| dimethyladenosine transferase [Mobiluncus mulieris FB024-16]
 gi|307613315|gb|EFN92566.1| dimethyladenosine transferase [Mobiluncus mulieris FB024-16]
          Length = 303

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 137/299 (45%), Gaps = 28/299 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT    +  ++ +     I P K  GQNF+ D   +++IA  +       V+EIG G G+
Sbjct: 1   MTELLGTRDIRELCLALDIKPSKKRGQNFVTDPGTVRRIAAGASLSSAEVVLEIGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE---IIQDDALKVD----FEKFF 113
           LT  LL  GAR VI +E D +    L      H   +E   +   DAL +D         
Sbjct: 61  LTLALLETGAR-VIAVEIDSRLAAALPTTVRVHEGLVENLYVSCADALHLDSTSRVMTDT 119

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
               P+ ++ANLPYN+ T +L + +      P      ++ Q EV +R+ A+     YG 
Sbjct: 120 GWPPPVALVANLPYNVATPILLHILEVM---PEINRAQVMVQAEVADRLVARVGDSAYGA 176

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL----------- 222
            SV   W   A   F +S  VF P P V STV+ F      +   +ESL           
Sbjct: 177 PSVKLAWWGCARRAFGVSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQR 236

Query: 223 -KKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
             +    AFG RRKTLRQSL RL G       LL +AGI+  LRAENL + DF  +  +
Sbjct: 237 SFEFITAAFGMRRKTLRQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARV 295


>gi|95930212|ref|ZP_01312950.1| dimethyladenosine transferase [Desulfuromonas acetoxidans DSM 684]
 gi|95133675|gb|EAT15336.1| dimethyladenosine transferase [Desulfuromonas acetoxidans DSM 684]
          Length = 263

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 15/267 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P+K  GQNFL D N++     ++       V+EIG G G LT  ++   A  + +IE 
Sbjct: 4   HRPRKRFGQNFLKDKNVIAATIAAAELTGDDHVLEIGPGQGALTDQMIGRVA-SLDIIEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+      +    QH   L +   DAL++D+     +  P +++ANLPYNI +++LF  I
Sbjct: 63  DRDLATFFQARPEQH---LTVHVGDALRLDWSAIL-LDPPYKLVANLPYNISSQILFKMI 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    E + L+FQKEVG+R+ A+ +S  YG L+VL       + +  + P  FFP 
Sbjct: 119 EHR---HLIERMVLMFQKEVGDRLRAEPSSKDYGALTVLCQLWFDVSRVALVPPTAFFPQ 175

Query: 199 PKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL-KRLGGENLLHQA-- 253
           PKV S V+ F     P           ++ + +F +RRKTLR  L         L +   
Sbjct: 176 PKVMSEVLCFKQREQPRAQVDDPAFFTRVVKASFAQRRKTLRNCLVAAGFTAEQLEKVTA 235

Query: 254 --GIETNLRAENLSIEDFCRITNILTD 278
             G++   R E  +IE+F ++ + L +
Sbjct: 236 ETGLDFGRRGETFTIEEFAQLAHGLQN 262


>gi|281200359|gb|EFA74579.1| Dimethyladenosine transferase [Polysphondylium pallidum PN500]
          Length = 410

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 165/298 (55%), Gaps = 22/298 (7%)

Query: 1   MTMNNKS-HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M++   +   ++ ++  Y +  K+ + QNFLLDLNI  KI   +G  +  TVIE+GAGPG
Sbjct: 1   MSIKLPNMPKIQDLIRLYGLSAKQQLSQNFLLDLNITDKICRVAGGFNDCTVIEVGAGPG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------- 112
            LT+ LL  GA+KVI +E D++F P LK +      RL ++  D   V+  +        
Sbjct: 61  GLTRSLLNSGAKKVIAVEMDRRFIPALKMLEDASDGRLSVVMGDMKDVNEAEILKQFGAV 120

Query: 113 ---FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITA 164
              ++  S ++II NLP+N+GT L+  WI                + L+FQKE+ +RI A
Sbjct: 121 PTDWDKPSKVKIIGNLPFNVGTHLMLKWIRQIKPREGLFEFGRVPMILMFQKELADRIIA 180

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESL 222
             +S  YGRL+V+      + +++D+   VF P PKV ++V++  P + PI      E L
Sbjct: 181 PVSSHEYGRLAVMIQQECDSKVVYDLPGKVFVPPPKVDASVVYIEPKVKPIGDLKSKEYL 240

Query: 223 KKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           + + +E F ++RKTL  ++K L  G E+L+   GI+   R +NL++E+  +I+N   D
Sbjct: 241 EYVCRELFTQKRKTLGNAIKCLGNGAESLIE--GIDPTKRPQNLTVEELVKISNRFND 296


>gi|196228205|ref|ZP_03127072.1| dimethyladenosine transferase [Chthoniobacter flavus Ellin428]
 gi|196227608|gb|EDY22111.1| dimethyladenosine transferase [Chthoniobacter flavus Ellin428]
          Length = 460

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 139/280 (49%), Gaps = 13/280 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K  +++  L+   + P K +GQNFL D N+ + I            +E+G G G LT+  
Sbjct: 2   KLSTIQASLNQLGMQPTKSLGQNFLHDQNLAEWIVAQLDIQPEEAWVELGPGLGALTEFA 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L    R ++ IEKD +    L++        LEII  DA + D  + F    PI+++ NL
Sbjct: 62  LARSPRGLV-IEKDGRLAGFLRERFPA----LEIIHGDASEFDVRELF-ARGPIKVLGNL 115

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + +++LF +      P    +L    QKE+ ER++A   +  YG L++L G R K  
Sbjct: 116 PYYVSSQILFAFTGE---PSPVSALIFTLQKELAERLSAGPWTKEYGALTLLVGRRWKVK 172

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSL-- 241
            +  +   VF P+PKV S ++   P        C  E   ++ ++ F +RRK LR++L  
Sbjct: 173 YLRTLPGSVFMPAPKVDSAIVLLTPRPAGEVPACDGELFTRLVKQGFAQRRKQLRKNLAG 232

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           + L    L    G+E   RAE LS+E +  +TN +T + D
Sbjct: 233 RNLDWPALCQHLGVEETTRAEELSLEQWIALTNFVTKSSD 272


>gi|62858143|ref|NP_001016494.1| dimethyladenosine transferase 1, mitochondrial [Xenopus (Silurana)
           tropicalis]
 gi|123893272|sp|Q28HM1|TFB1M_XENTR RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|89272950|emb|CAJ83142.1| transcription factor B1, mitochondrial [Xenopus (Silurana)
           tropicalis]
 gi|213624236|gb|AAI70821.1| transcription factor B1, mitochondrial [Xenopus (Silurana)
           tropicalis]
 gi|213624254|gb|AAI70849.1| transcription factor B1, mitochondrial [Xenopus (Silurana)
           tropicalis]
          Length = 346

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 145/299 (48%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++  I+  + +  +K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  G  +++V+EKD +F P LK ++     +++I+  D L    ++ F         +  
Sbjct: 74  LNAGVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWDDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   AD   PF      +TL FQKEV ER+TA  +S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLEQLADRTGPFTYGRTQMTLTFQKEVAERLTASTSSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++          F I    F P P+V   V+HF P + P I    + ++K+ +  F
Sbjct: 194 SRLSIMAQNLCNVKNCFTIPGRAFVPKPEVDVGVVHFTPFIQPKIEQPFKVVEKVVRSVF 253

Query: 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK     +  L  E         +L  A ++  LR   L++  F ++ N+  +  D
Sbjct: 254 QFRRKYCHHGVSILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312


>gi|227501495|ref|ZP_03931544.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49725]
 gi|227077520|gb|EEI15483.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49725]
          Length = 287

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 134/278 (48%), Gaps = 20/278 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     I P K +GQNFL D N +++I  ++       V+E+G G G+LT  L+  
Sbjct: 14  EIRALAEKLDITPTKKLGQNFLHDPNTIRRIIAAADLDPTDHVVEVGPGLGSLTLGLVET 73

Query: 69  GARKVIVIEKDQQFFPILK----DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
             + +  +E D +    L     + +  +  RL +++ DAL+V  E   ++++P  ++AN
Sbjct: 74  -VQDLTAVEIDPRLAAQLPETVGERAEDYAKRLRVVEKDALRVTSE---DVAAPTALVAN 129

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L +++      P    + ++ Q EV +R+ A+  S  YG  SV  G+    
Sbjct: 130 LPYNVAVPVLLHFLET---FPSIRRVLVMVQLEVAQRLAAEPGSKIYGVPSVKAGFYGAV 186

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQS 240
           +    I  +VF+P+P + S ++       P          ++  +   AF +RRKTLR +
Sbjct: 187 SQAGTIGKNVFWPAPNIASGLVRIDVFDTPPWPVDDAARAAVWPLVDAAFAQRRKTLRAA 246

Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           L    G        L  AGI+   R E L++ DF R+ 
Sbjct: 247 LSGHYGSGAAAEEALRAAGIDPKQRGEKLAVADFVRLA 284


>gi|300743832|ref|ZP_07072852.1| dimethyladenosine transferase [Rothia dentocariosa M567]
 gi|300380193|gb|EFJ76756.1| dimethyladenosine transferase [Rothia dentocariosa M567]
          Length = 312

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 132/279 (47%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   I P K +GQNF++D N +++I  ++   D  TV+EIG G G+LT  L 
Sbjct: 30  PQEIRDLAAQLGIRPTKTLGQNFVIDPNTIRRIVAAADITDDETVLEIGPGLGSLTLGLA 89

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
              AR+V+ +E D      L    ++        + ++  DALKV         +P  ++
Sbjct: 90  D-AARQVVAVEIDPPLAQQLPHTIAKFRPDKAQNVNVVLMDALKVTE----LPHTPDALV 144

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L +  +     P      ++ Q EV +R+ A+  S  YG  SV   W  
Sbjct: 145 ANLPYNVAVPVLLHLFAQ---FPSICHALVMVQDEVADRLAAKPGSKIYGVPSVKASWYA 201

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
           +      I  +VF+P+PK+ S ++ F     P+     + +  +   AF +RRKTLR +L
Sbjct: 202 EVFKAGVIGKNVFWPAPKINSGLVGFRMRPQPLADIDRDEVFTVIDAAFAQRRKTLRAAL 261

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E +L +AGI    R E L I  + RI   
Sbjct: 262 ASWAGSGARAEVILTEAGITPTERGEKLDIHGYIRIAQA 300


>gi|261880118|ref|ZP_06006545.1| dimethyladenosine transferase [Prevotella bergensis DSM 17361]
 gi|270333202|gb|EFA43988.1| dimethyladenosine transferase [Prevotella bergensis DSM 17361]
          Length = 269

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 130/264 (49%), Gaps = 12/264 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+ PKK +GQ+FL DLNI K+IA++      I V+EIG G G LTQ L+    R+V  +E
Sbjct: 5   KVKPKKNLGQHFLTDLNIAKRIADTVDVCPEIPVLEIGPGMGVLTQYLVE-KPREVKAVE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    L +   +   R  II  D L+++  + F    P  +  N PY+I +++ F  
Sbjct: 64  IDSESVTYLNEHFPKL--RDNIIAADFLRMNLNEVFG-GRPFVLTGNYPYDISSQIFFKM 120

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P     T + Q+EV  R+ +   +  YG LSVL         +F +S  VF P
Sbjct: 121 LDYKDLIP---CCTGMIQREVALRMASAPGNKAYGILSVLIQAWYDVEYLFTVSEGVFNP 177

Query: 198 SPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    +    + C     K++ +  F +RRK LR SLK+L  +  +      
Sbjct: 178 PPKVKSAVIRMTRNAVVELGCDEALFKRVVKATFNQRRKMLRVSLKQLFSKETMPAPVFF 237

Query: 257 T----NLRAENLSIEDFCRITNIL 276
           T     +R E L I+ F  +TN++
Sbjct: 238 THEMMTMRPEQLCIQQFVELTNMV 261


>gi|255327324|ref|ZP_05368398.1| dimethyladenosine transferase [Rothia mucilaginosa ATCC 25296]
 gi|255295604|gb|EET74947.1| dimethyladenosine transferase [Rothia mucilaginosa ATCC 25296]
          Length = 290

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 130/279 (46%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     I P K +GQNF++D N +++I  ++      TV+E+G G G+LT  +L
Sbjct: 9   PAEIRELAEMLGIRPTKTLGQNFVIDPNTIRRIVNAAEISPEETVLEVGPGLGSLTLGIL 68

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A+ ++ +E D      L    +    +    ++++  DALKV         +P  ++
Sbjct: 69  D-AAKDMVAVEIDPPLAQQLPHTIEKFRPEKGGDIDVVLMDALKVTE----LPRTPDALV 123

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L +  +     P      ++ Q EV +R++A   S  YG  SV   W  
Sbjct: 124 ANLPYNVAVPVLLHLFAQ---FPSIRHALVMVQDEVADRLSATPGSKIYGVPSVKANWYA 180

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
           +      I  +VF+P+PK+ S ++ F     P+     + +  I   AF +RRKTLR +L
Sbjct: 181 EVYKAGVIGKNVFWPAPKINSGLVGFRMREEPLSTVDRDLVFTIVDAAFAQRRKTLRAAL 240

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E +L  AGI    R E L I  F RI   
Sbjct: 241 SSWAGSGARAEQILVAAGIAPTERGEKLDIHGFIRIAEA 279


>gi|224367389|ref|YP_002601552.1| KsgA [Desulfobacterium autotrophicum HRM2]
 gi|259494248|sp|C0QFJ2|RSMA_DESAH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|223690105|gb|ACN13388.1| KsgA [Desulfobacterium autotrophicum HRM2]
          Length = 284

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/274 (34%), Positives = 141/274 (51%), Gaps = 15/274 (5%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L   +++ +K +GQNFL D N  + I   +G  D   V+EIG G G LT     L AR 
Sbjct: 7   LLKKQQLMARKELGQNFLSDPNAARMIVTKAGISDQDRVLEIGPGLGALTIPAAKL-ARD 65

Query: 73  VIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           ++ +EKD +   IL +++  +    +E+I +D L  D    F     I +I NLPYNI +
Sbjct: 66  LVAVEKDTRLAGILMEELKRESIENVELINNDILHQDLNTLFR-GEKIIVIGNLPYNISS 124

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           ++LF  +         +   L+FQKE+ ERI+A      YGRLSV+  + +    + D+ 
Sbjct: 125 QVLFMLVENR---HLIKRAVLMFQKELTERISASPGGRDYGRLSVVMQYCSTVKKIADLP 181

Query: 192 PHVFFPSPKVTSTV--IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK------- 242
           PH+FFP P V S V  ++F             L K+ + AF KRRKTLR SL        
Sbjct: 182 PHLFFPKPAVDSRVIEVNFFETTPYSGERERFLFKVIKAAFSKRRKTLRNSLAGGELDID 241

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 +L  A I+   RAE LS+E++ R+++ L
Sbjct: 242 TKVSAKILETAEIDPVRRAETLSVEEYSRLSDAL 275


>gi|227501188|ref|ZP_03931237.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098]
 gi|227216589|gb|EEI81993.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098]
          Length = 280

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 135/284 (47%), Gaps = 13/284 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        +K I+  Y     K +GQNFL+D N ++KI + +       V+EIG G G 
Sbjct: 1   MKKLYSPKVVKDIIDFYNFRFSKSLGQNFLVDKNFVEKIVDRADV-KDTNVLEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           +T  +    A+KV+ IE D    PI+++   +  N  ++I +D LK + EK         
Sbjct: 60  ITYEMAKS-AKKVVAIEIDSALLPIIEENMEEFDN-FKLIHEDILKANLEKIVEEEFSGE 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             ++++NLPY I T ++   +++         +T++ QKEV +R+ A +    Y  LSV 
Sbjct: 118 AFKVVSNLPYYITTPIIEKLVTSKLP---CTDMTIMVQKEVADRMLATEKDKEYSSLSVF 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             + T+A  + ++   VF P PK+ STV+               L  I    F KRRKT+
Sbjct: 175 IKYFTEAEKITNVPKSVFMPQPKIDSTVLKLKLRKYRDDVDESKLFAIVHAGFNKRRKTI 234

Query: 238 RQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277
             SL     +        + GI   LRAENLS++DF  +T  + 
Sbjct: 235 LNSLADAVDKEKLRLAFDKLGINEKLRAENLSLDDFIDLTKTIE 278


>gi|121611713|ref|YP_999520.1| dimethyladenosine transferase [Verminephrobacter eiseniae EF01-2]
 gi|166221713|sp|A1WS95|RSMA_VEREI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|121556353|gb|ABM60502.1| dimethyladenosine transferase [Verminephrobacter eiseniae EF01-2]
          Length = 284

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 135/276 (48%), Gaps = 22/276 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  P+K +GQ+FL D  I+  I ++     G  ++EIG G   LTQ L+    R + VIE
Sbjct: 13  RHRPRKRLGQHFLTDQRIIDAIVQAIAPQPGQPMVEIGPGLAALTQPLVERLGR-LTVIE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--------ISSPIRIIANLPYNI 129
            D+     L+  +      L++IQ D L+VDF               + +R++ NLPYNI
Sbjct: 72  LDRDLALRLRRHA-----HLQVIQADVLRVDFTALAQTLRATPPTPPTRLRVVGNLPYNI 126

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF+ ++  +     E    + QK+V ER+ A+     YGRLSV+  WR     +  
Sbjct: 127 STPILFHLLAHGSA---IEDQHFMLQKQVVERMVAKPGGSDYGRLSVMLQWRYAMEKLLH 183

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           + P  F P P+V S V+  +PH  P       L+++ Q AF +RRK L  +L R    + 
Sbjct: 184 VPPASFAPPPRVDSAVVRMLPHAQPAAVSRPMLEELVQLAFSQRRKLLHHTLGRWLDAHQ 243

Query: 250 LHQAGIETNLRAENLSIEDFCRIT----NILTDNQD 281
            +    +T  RAE + ++++  +       + D +D
Sbjct: 244 -YAGRFDTRRRAEEVPVQEYLDLAREAHRWIADGKD 278


>gi|170289118|ref|YP_001739356.1| dimethyladenosine transferase [Thermotoga sp. RQ2]
 gi|226732634|sp|B1LBH5|RSMA_THESQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|170176621|gb|ACB09673.1| dimethyladenosine transferase [Thermotoga sp. RQ2]
          Length = 260

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 135/261 (51%), Gaps = 18/261 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  Y +  KK++GQ FL D  I K+I +++       V+EIGAG G LT+ L   GAR V
Sbjct: 7   LKKYGVRLKKHLGQVFLSDDRIAKRIVKAADLTPEDVVVEIGAGAGTLTEELTKTGAR-V 65

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           I  E D+   PIL++  S++PN +E+  +D LK       ++      ++N+PYNI   L
Sbjct: 66  IAYEIDESLAPILQERLSKYPN-VELRFEDFLK-----AKDVPEGAICVSNIPYNITGPL 119

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +   I        ++   ++ QKEVGERI A+     YG LSV+     +   +FD+S  
Sbjct: 120 MEKIIEWK-----FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P+P+V STV+       P+    E  KK     F K+RKTL+ +LK      +    
Sbjct: 175 CFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNLKPFLS--IFE-- 228

Query: 254 GIETNLRAENLSIEDFCRITN 274
           G++ + RAE L++E+   +  
Sbjct: 229 GVDLSRRAEQLTVEEIVELYE 249


>gi|212550844|ref|YP_002309161.1| dimethyladenosine transferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549082|dbj|BAG83750.1| dimethyladenosine transferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 262

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/263 (33%), Positives = 130/263 (49%), Gaps = 13/263 (4%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+I PKK +GQ FL DL++ ++I E++     + V+E+G G G LTQ LL    R + V+
Sbjct: 5   YRIFPKKSLGQYFLNDLSVAQRIVETTSFYPELPVLEVGPGTGVLTQFLLYSK-RNLTVV 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D++    LK    Q  NR  II+ D LK+     F       +I N PY+I +++ F 
Sbjct: 64  EIDERSVNFLKKRYPQLGNR--IIEADFLKLSLGDLF--PGYFYVIGNYPYSIASQIFFK 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +          S + + QKEV ER+ +      YG ++VL         +F + P  F 
Sbjct: 120 ILDYKDK---ILSCSGMLQKEVAERLVSSPGKKTYGIITVLLRTWYDVEYLFTVPPSCFN 176

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P+PKV S V+  + +      C ESL + I + AF +RRK LR SLK L          I
Sbjct: 177 PNPKVDSAVVRMVRNGRTNLGCDESLFRTIVKTAFNQRRKILRNSLKSLFRRE--TSISI 234

Query: 256 ET--NLRAENLSIEDFCRITNIL 276
                 R E LSIE+F  + N+ 
Sbjct: 235 SPLFYKRPEQLSIEEFIELANLF 257


>gi|296271121|ref|YP_003653753.1| dimethyladenosine transferase [Thermobispora bispora DSM 43833]
 gi|296093908|gb|ADG89860.1| dimethyladenosine transferase [Thermobispora bispora DSM 43833]
          Length = 288

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 130/278 (46%), Gaps = 16/278 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF++D   L++I   +       V+E+G G G+LT  LL
Sbjct: 12  PADVRALAELLNLRPTKRLGQNFVIDGGTLRRIVRLAQVTPEDVVLEVGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V+ +E D      L    +++      RL +++ DAL++  E      +P  ++
Sbjct: 72  PEAA-QVVAVEVDPVLAERLPVTVAEYAPEVAGRLRVVRADALRIGPEDL--GVAPDALV 128

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L +  +     P      ++ Q EV +R+TAQ  S  YG  SV   W  
Sbjct: 129 ANLPYNVAVPILLHLFA---VLPSLRRGLVMVQAEVADRLTAQPGSKLYGVPSVKIAWFA 185

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLR--- 238
           +      +   VF+P P V S ++  +    P      E +  +   AF +RRKTLR   
Sbjct: 186 EVRRAGSVGRSVFWPVPNVDSGLVALVRRDPPKTTASREEVFAVVDAAFAQRRKTLRAAL 245

Query: 239 --QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
              +    G E  L  AGI+ + R E L+IEDF RI  
Sbjct: 246 APWAGGAAGAERALRDAGIDPSARGERLTIEDFARIAE 283


>gi|30248888|ref|NP_840958.1| dimethyladenosine transferase [Nitrosomonas europaea ATCC 19718]
 gi|33516924|sp|Q82W15|RSMA_NITEU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|30138505|emb|CAD84795.1| ksgA; dimethyladenosine transferase [Nitrosomonas europaea ATCC
           19718]
          Length = 257

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 136/265 (51%), Gaps = 12/265 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  P+K  GQ+FL+D +++ +I      + G  +IEIG G G LT+ LL +   ++ VIE
Sbjct: 2   RHTPRKRFGQHFLVDTSVIAEIIHIIHPVPGDRMIEIGPGLGALTKPLLNVL-DELQVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L      +P +L I   DALK DF +       +RII NLPYNI T LLF+ 
Sbjct: 61  IDRDIVDYLSRT---YPGKLVIHNIDALKFDFSEL---GEGLRIIGNLPYNISTPLLFHL 114

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                +      +  + Q EV ER+ A  ++P YGRLS++   R +   M  +    F P
Sbjct: 115 ---SRFSSLITDMYFMLQLEVVERMVALPSTPDYGRLSIMLQNRFEMEQMLVVPAESFDP 171

Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P+V S ++   P   P IP   E L   +   AF +RRKTLR +L+     +   +  I
Sbjct: 172 PPRVQSAIVCMRPKAEPTIPLKHERLFAELVSAAFSQRRKTLRNTLRHYLTADDFERLEI 231

Query: 256 ETNLRAENLSIEDFCRITNILTDNQ 280
           ++ LRAENLS+  +  I   + +++
Sbjct: 232 DSGLRAENLSLAQYAAIVRQVYEDR 256


>gi|239941894|ref|ZP_04693831.1| dimethyladenosine transferase [Streptomyces roseosporus NRRL 15998]
 gi|239988357|ref|ZP_04709021.1| dimethyladenosine transferase [Streptomyces roseosporus NRRL 11379]
 gi|291445344|ref|ZP_06584734.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291348291|gb|EFE75195.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 291

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL
Sbjct: 12  PADIRDLAATLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +VI +E D      L    +    +  +R  ++  DA+ V         +P  ++
Sbjct: 72  E-AADRVIAVEIDDVLAAALPATVQARMPERADRFALVHSDAMLVTE---LPGPAPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L   +      P  E   ++ Q EV +R+ A+  +  YG  SV   W  
Sbjct: 128 ANLPYNVAVPVLLTMLER---FPSIERTLVMVQSEVADRLAARPGNKVYGVPSVKANWYA 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
                  I  +VF+P+P V S ++  +    P+        +  +   AF +RRKTLR +
Sbjct: 185 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRTEPLATKASRAEVFAVVDAAFAQRRKTLRAA 244

Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274
           L          E  L  AGI    R E L++E+F  I  
Sbjct: 245 LAGWAGSAPAAEAALVAAGISPQARGEALTVEEFAAIAE 283


>gi|255020167|ref|ZP_05292236.1| Dimethyladenosine transferase [Acidithiobacillus caldus ATCC 51756]
 gi|254970309|gb|EET27802.1| Dimethyladenosine transferase [Acidithiobacillus caldus ATCC 51756]
          Length = 282

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/262 (37%), Positives = 139/262 (53%), Gaps = 10/262 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIE 77
             KK  GQNFL+   I+++I  + G      ++EIG G G LT+ LL   A      VIE
Sbjct: 8   QAKKRFGQNFLVQPAIVQRIVAAVGPGSSDALVEIGPGRGALTRALLAALAPAQRLRVIE 67

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFN 136
            D+   PIL++++   P RLEI+  DALKVDF K  +   + +RI+ NLPYNI T LLF+
Sbjct: 68  LDRDLLPILRNLAP--PERLEILAADALKVDFLKIADTAGARLRIVGNLPYNISTPLLFH 125

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           +  + Q+EV ERI A+  S  YGRLSV+        M+F ++P  F 
Sbjct: 126 LLGQAEA---ITDMHFMLQREVVERIVARPGSGTYGRLSVMLQAYCLVEMLFPVAPGNFH 182

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S  +  +P    PI    ++L   + + AF +RRKTL  + +         Q  
Sbjct: 183 PVPKVDSAFLRLVPRHPTPIAPARQALFAEVVRLAFAQRRKTLANNFRSRLPAPAWEQLA 242

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           I+   RAE LS++DF R+T  L
Sbjct: 243 IDPGRRAETLSVDDFFRLTEAL 264


>gi|188584688|ref|YP_001916233.1| dimethyladenosine transferase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|254807876|sp|B2A3L9|RSMA_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|179349375|gb|ACB83645.1| dimethyladenosine transferase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 302

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 139/299 (46%), Gaps = 30/299 (10%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               +  +L  Y+I PKK +GQNFL+D NI++KI  ++   +   V+EIG G G LT+ +
Sbjct: 5   SPKEVSQLLKRYEIHPKKSLGQNFLVDGNIIQKIIAAAELKEQDIVLEIGPGLGTLTRDM 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---------- 115
                 ++  IE DQ+   IL++      N + II +DALK+D+++  +           
Sbjct: 65  SFY-VNEIFAIELDQRMIDILQETVGSCDN-VNIIHNDALKLDYQELISDFIEFSPAQLQ 122

Query: 116 -------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
                     ++ ++NLPY I + L+               + L+ Q+EV +R TA   S
Sbjct: 123 CKSKQINPKNLKAVSNLPYYIASPLVLKLAKEKVP---LSVMVLMVQREVADRFTASPGS 179

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKIT 226
            +YG ++VL     +   +F++   VF+P P+V S V+               E   K  
Sbjct: 180 KNYGAVTVLLDCFYEVEGVFNVPKTVFYPQPRVESQVVKLTKRSEAKINDDYQEDFIKFV 239

Query: 227 QEAFGKRRKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            +AF  RRKTL  ++  +          +L   G    +R E L++++F +I  I+ + 
Sbjct: 240 NQAFNSRRKTLVNNILSIFTGEKSELSQILENNGFSAGIRGEQLTVDEFAQIFKIIYNR 298


>gi|121596391|ref|YP_988287.1| dimethyladenosine transferase [Acidovorax sp. JS42]
 gi|226729746|sp|A1WD86|RSMA_ACISJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120608471|gb|ABM44211.1| dimethyladenosine transferase [Acidovorax sp. JS42]
          Length = 253

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 129/259 (49%), Gaps = 12/259 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+    R + V+E
Sbjct: 2   KHIPRKRFGQHFLSDQGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLGR-LTVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLF 135
            D+     L+        +L++I+ D LKVDF +      +S IR++ NLPYNI T +LF
Sbjct: 61  LDRDLAARLRQH-----GQLDVIESDVLKVDFAQVAQALNASKIRVVGNLPYNISTPILF 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + ++             + QKEV +R+ A   +  YGRLSV+  WR     +  + P  F
Sbjct: 116 HLLAHVR---VIADQHFMLQKEVIDRMVAAPATSAYGRLSVMLQWRYAMENVLFVPPESF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P P+V S V+  +PH  P    +  L+++ Q AF +RRK LR +L R            
Sbjct: 173 DPPPRVDSAVVRMVPHEAPEALSMPVLEELVQVAFSQRRKLLRHTLGRWLEARQFAGT-F 231

Query: 256 ETNLRAENLSIEDFCRITN 274
           +T  RAE + + ++  +  
Sbjct: 232 DTQRRAEEVPVSEYVALAQ 250


>gi|283458615|ref|YP_003363250.1| dimethyladenosine transferase [Rothia mucilaginosa DY-18]
 gi|283134665|dbj|BAI65430.1| dimethyladenosine transferase [Rothia mucilaginosa DY-18]
          Length = 290

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     I P K +GQNF++D N +++I  ++      TV+E+G G G+LT  +L
Sbjct: 9   PAEIRELAEMLGIRPTKTLGQNFVIDPNTIRRIVNAAEISPEETVLEVGPGLGSLTLGIL 68

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A+ ++ +E D      L    +    +  + ++++  DALKV         +P  ++
Sbjct: 69  D-AAKDMVAVEIDPPLAQQLPHTIEKFRPEKADDIDVVLMDALKVTE----LPRTPDALV 123

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L +  +     P      ++ Q EV +R++A   S  YG  SV   W  
Sbjct: 124 ANLPYNVAVPVLLHLFAQ---FPSIRHALVMVQDEVADRLSATPGSKIYGVPSVKANWYA 180

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL 241
           +      I  +VF+P+PK+ S ++ F     P+     + +  I   AF +RRKTLR +L
Sbjct: 181 EVYKAGVIGKNVFWPAPKINSGLVGFRMREEPLSTVDRDLVFTIVDAAFAQRRKTLRAAL 240

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E +L  AGI    R E L I  F RI   
Sbjct: 241 SSWAGSGARAEQILVAAGIAPTERGEKLDIHGFIRIAEA 279


>gi|89898507|ref|YP_515617.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56]
 gi|119365014|sp|Q253R6|RSMA_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|89331879|dbj|BAE81472.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56]
          Length = 284

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 14/283 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           ++ ++     + +   +   PKK + QNFL+D NIL+KI   S    G  V+EIG G G 
Sbjct: 7   LSRSSPDQLTRFLAQVHGH-PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGA 65

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT++L+  GA  V+ +EKD  F   LK +    P  LEI       +   +        R
Sbjct: 66  LTEVLVNQGAH-VVALEKDPMFEETLKQL----PIDLEITDACKYPLSQLQEKGWQGKGR 120

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY+I T LL         P  W+++T++ Q EV  RITAQ     YG L++   +
Sbjct: 121 VVANLPYHITTPLLTKLFLE--VPNQWKTITVMMQDEVARRITAQPGGKEYGSLTIFLQF 178

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL-ESLKKITQEAFGKRRKTLR 238
                  F +S   FFP P+V+S V+H       P+   L +    +T+ AFG+RRK L 
Sbjct: 179 FADVRYAFKVSSGCFFPKPQVSSAVVHMTVKDTFPLEESLHKKFFSLTRAAFGQRRKLLA 238

Query: 239 QSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILT 277
            +LK L  ++L    L+Q       R E LS++++ ++  +L+
Sbjct: 239 NALKNLYPKDLVFSALNQLNFSEKTRPETLSLDEYLKLFQLLS 281


>gi|254388805|ref|ZP_05004037.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294813100|ref|ZP_06771743.1| Dimethyladenosine transferase [Streptomyces clavuligerus ATCC
           27064]
 gi|326441601|ref|ZP_08216335.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|197702524|gb|EDY48336.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325699|gb|EFG07342.1| Dimethyladenosine transferase [Streptomyces clavuligerus ATCC
           27064]
          Length = 310

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 17/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL
Sbjct: 37  PADIRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRADDVVVEVGPGLGSLTLALL 96

Query: 67  TLGARKVIVIEKDQQFFPIL-KDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRII 122
              A  V+ +E D      L   I ++ P    R  ++  DA+ V   +      P  ++
Sbjct: 97  E-AADSVVAVEIDDVLAGALPATILARMPERAPRFSLVHSDAMLV---RELPGPPPTALV 152

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   +  YG  SV   W  
Sbjct: 153 ANLPYNVAVPVLLHMLDR---FPTIERTLVMVQAEVADRLAAAPGNKVYGVPSVKANWYA 209

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSL 241
                  I  +VF+P+P V S ++  +    P     ++ +  +   AF +RRKTLR +L
Sbjct: 210 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRDPPRTTATKAQVFAVVDAAFAQRRKTLRAAL 269

Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
               G        L  AGI    R E+L++E+F RI   
Sbjct: 270 AGWAGSPAAAEAALVAAGISPQARGESLTVEEFARIAEA 308


>gi|306835652|ref|ZP_07468661.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49726]
 gi|304568496|gb|EFM44052.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49726]
          Length = 287

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 20/278 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     I P K +GQNFL D N +++I  ++       V+E+G G G+LT  L+  
Sbjct: 14  EIRALAEKLDITPTKKLGQNFLHDPNTIRRIIAAADLDPADRVVEVGPGLGSLTLGLVET 73

Query: 69  GARKVIVIEKDQQFFPILK----DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
               +  +E D +    L     + ++ +  RL +++ DAL+V  E   ++++P  ++AN
Sbjct: 74  -VEDLTAVEIDPRLAAQLPETVGERAADYAERLRVVEKDALRVTSE---DVTAPTALVAN 129

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L +++      P    + ++ Q EV +R+ A   S  YG  SV  G+    
Sbjct: 130 LPYNVAVPVLLHFLET---FPSIRRVLVMVQLEVAQRLAAAPGSKIYGVPSVKAGFYGTV 186

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQS 240
           +    I  +VF+P+P + S ++       P          ++  +   AF +RRKTLR +
Sbjct: 187 SQAGTIGKNVFWPAPNIASGLVRIDVFDTPPWPVDDAARAAVWPLVDAAFAQRRKTLRAA 246

Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           L    G        L  AGI+   R E L++ DF R+ 
Sbjct: 247 LSGHYGSGAAAEEALRAAGIDPQQRGEKLAVADFVRLA 284


>gi|281425444|ref|ZP_06256357.1| dimethyladenosine transferase [Prevotella oris F0302]
 gi|281400437|gb|EFB31268.1| dimethyladenosine transferase [Prevotella oris F0302]
          Length = 265

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/264 (31%), Positives = 133/264 (50%), Gaps = 12/264 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK +GQ+FL DLNI ++IA++  +   I V+EIG G G LTQ L+T   R+V  +E 
Sbjct: 4   VKAKKNLGQHFLTDLNIARRIADTVDACPDIPVLEIGPGMGVLTQYLVT-KDREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L +   +   R  II +D L++D  K F    P  +  N PY+I +++ F  +
Sbjct: 63  DKESVAFLHENYPEL--RDNIIGEDFLRMDLCKVFE-RRPFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ ++  +  YG LSVL         +F +   VF P 
Sbjct: 120 DYKDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYNVEYLFTVDETVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI  + +    + C     K++ +  F +RRK LR S+K++  +     A   T
Sbjct: 177 PKVKSAVIRMMRNEVTDLGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEKPASAEFLT 236

Query: 258 ----NLRAENLSIEDFCRITNILT 277
                 R E LS++ F  +TN++ 
Sbjct: 237 LDVMTKRPEQLSVQQFVELTNLVE 260


>gi|37521560|ref|NP_924937.1| rRNA (adenine-N6,N6)-dimethyltransferase [Gloeobacter violaceus PCC
           7421]
 gi|62900565|sp|Q7NJ41|RSMA_GLOVI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|35212558|dbj|BAC89932.1| rRNA (adenine-N6,N6)-dimethyltransferase [Gloeobacter violaceus PCC
           7421]
          Length = 272

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 129/263 (49%), Gaps = 14/263 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ++L D  +L +I  ++G   G  V+EIG G G+LT  LL      V+ +E D++ 
Sbjct: 5   KRFGQHWLNDGAVLDRIVAAAGLACGDRVLEIGPGLGSLTARLLRQVP--VVAVEIDRRA 62

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              L+        R  +++ D L+    +  N+     ++AN+PYNI   +L     +  
Sbjct: 63  VAQLQRQFGG-DKRFVLVEGDILREALPEPANV-----VVANIPYNISGPILAKLTGSLA 116

Query: 143 WP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            P   + ++ LL QKE+G+RI A   S  YG LSV   +  +  ++F++  H F P PKV
Sbjct: 117 QPIRRFRTIVLLVQKELGQRIAAPPGSRTYGALSVRLQYLAECELLFEVPSHCFTPPPKV 176

Query: 202 TSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256
            S VI   P    +     + L  +   AF  RRK L+  LK       L  A     I 
Sbjct: 177 DSAVIRLTPRPFALQADDPAHLDALVTRAFATRRKMLKNCLKGWVETEKLLAAFASLDIS 236

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            + RAE+LS+E F +++N L ++
Sbjct: 237 PDARAEDLSVERFVQLSNRLAES 259


>gi|332877578|ref|ZP_08445322.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684427|gb|EGJ57280.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 258

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 99/260 (38%), Positives = 137/260 (52%), Gaps = 10/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL DLNI +KIA++    +   V+EIGAG G LTQ LL     +V V+E 
Sbjct: 4   VKAKKHLGQHFLKDLNIAQKIADTLSLANYKKVVEIGAGMGVLTQFLLK-KDTEVYVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L+    +   +  II DD LK D   F     P  II N PYNI T+++F  +
Sbjct: 63  DKESVAYLEAHYPELRGK--IIADDFLKYDIAGFL--REPFAIIGNFPYNISTQIVFKLL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               + P +  +   FQKEV ERI  ++ S  YG LSVL     +AT +F +S  VF P 
Sbjct: 119 ELRDYVPEFSGM---FQKEVAERICEREGSKTYGILSVLVQAFYEATYLFTVSEGVFNPP 175

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S V+  +   +  + C       I + AF +RRKTLR SLK L     L    I  
Sbjct: 176 PKVKSGVLRLVRKSDYHLDCDEALFFTIVKTAFNQRRKTLRNSLKPLLTNEFLKNNSI-F 234

Query: 258 NLRAENLSIEDFCRITNILT 277
           + R E L  +DF  IT  ++
Sbjct: 235 DKRPEQLPWQDFVFITKEIS 254


>gi|238755736|ref|ZP_04617069.1| Dimethyladenosine transferase [Yersinia ruckeri ATCC 29473]
 gi|238706028|gb|EEP98412.1| Dimethyladenosine transferase [Yersinia ruckeri ATCC 29473]
          Length = 236

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/234 (36%), Positives = 125/234 (53%), Gaps = 8/234 (3%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G  V+EIG G G LT+ +       + VIE D+     L     Q  ++L I Q DA+K
Sbjct: 2   PGEAVVEIGPGLGALTEPVAAR-MDHMTVIELDRDLAARLA-CHPQLKDKLTIHQQDAMK 59

Query: 107 VDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
           V+F +       P+R+  NLPYNI T L+F+  S          +  + QKEV  R+ A 
Sbjct: 60  VNFAELAEQSGKPLRVFGNLPYNISTPLMFHLFSYTQA---ILDMHFMLQKEVVNRLVAG 116

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLK 223
            NS  YGRL+V+  +      + ++ P  F P+PKV S V+  IPH+N P P   +  L 
Sbjct: 117 PNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHINMPNPVGDVRMLS 176

Query: 224 KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +IT +AF +RRKT+R SL  L     L + G+   LRAEN+S+  +C++ N L+
Sbjct: 177 RITTQAFNQRRKTVRNSLGDLFTPEQLTELGVNPTLRAENISVAQYCKLANWLS 230


>gi|54026877|ref|YP_121119.1| dimethyladenosine transferase [Nocardia farcinica IFM 10152]
 gi|62900491|sp|Q5YPY6|RSMA_NOCFA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|54018385|dbj|BAD59755.1| putative ribosomal RNA small subunit dimethyltransferase [Nocardia
           farcinica IFM 10152]
          Length = 293

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 134/280 (47%), Gaps = 19/280 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +   + + P K +GQNF+ D N +++I  ++G     TV+E+G G G+LT  LL
Sbjct: 17  PAEVRALAERFGVRPTKQLGQNFVHDANTVRRIVTAAGVGRADTVLEVGPGLGSLTLALL 76

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            +    V+ +E D      L     D +     RL +++DDAL+V        +SP  ++
Sbjct: 77  DV-VDSVVAVEIDPVLAEHLPRTVADRAPALAGRLRVVRDDALRVRAADL--PASPTALV 133

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + ++     P   +  ++ Q EV +R+ A+  S  YG  SV  G+  
Sbjct: 134 ANLPYNVAVPVLLHLLAE---LPGLRTALVMVQAEVADRLAAEPGSRVYGVPSVKAGFFG 190

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKI---TQEAFGKRRKTLR 238
                  +   VF+P P+V S ++    ++ P  P   +  +++      AF +RRKTLR
Sbjct: 191 TVRRAGAVGTQVFWPVPRVESGLVRVERYVEPPWPMDEQHRRRVFEIIDAAFAQRRKTLR 250

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
            +L    G     E  L  AGI+   R E L    + R+ 
Sbjct: 251 AALAGWAGSPAEAERRLLAAGIDPTARGETLDTAAYVRLA 290


>gi|282931722|ref|ZP_06337210.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1]
 gi|297205158|ref|ZP_06922554.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16]
 gi|281304165|gb|EFA96279.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1]
 gi|297149736|gb|EFH30033.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16]
          Length = 293

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 142/284 (50%), Gaps = 20/284 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I++ Y    KK +GQNFL+ LN +  I +++       V+EIG G G+LT+ +L  G
Sbjct: 13  TKAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIKSDDQVLEIGPGIGSLTEQMLLRG 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQ------HPNRLEIIQDDALKVDFEK----FFNISSPI 119
           A KV+  E DQ    IL +   Q        +  +++  D LK DF++    FF+++ PI
Sbjct: 73  A-KVLAYEIDQDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKPI 131

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++F    +D     +ESLTL+ QKEV ER+ A   +  YG L++   
Sbjct: 132 KVVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQ 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLR 238
            +    M   +    F P PKV S V+   P    +     E+ + + +  F +RRKTL 
Sbjct: 189 TQMAVKMAVMVDHTNFNPQPKVDSAVVVLKPLAKKVDVGDTENFEHVVKMCFSQRRKTLN 248

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            +LK L       +NLL    +    R E L+I  F  +   L 
Sbjct: 249 NNLKSLVKNGEERKNLLQMLDLPEKARPEELTIGQFISLAKALK 292


>gi|66808105|ref|XP_637775.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4]
 gi|60466213|gb|EAL64275.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4]
          Length = 485

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 26/304 (8%)

Query: 1   MTMNN------KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEI 54
           MT+ N          ++ I+  + +  K+ + QNFL+D NI  KI + SG  D  TVIE+
Sbjct: 1   MTIKNLTTSLPPMPKIQEIIRIFGLSAKQQLSQNFLIDKNITDKICKKSGGFDDCTVIEV 60

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-- 112
           GAGPG LT+ LLT GA+KVI +E D +F+P LK +      R+ +I  + + VD  K   
Sbjct: 61  GAGPGGLTRSLLTSGAKKVIAVEMDPRFYPALKMLEESSGGRMSLIMANMMDVDEAKLLR 120

Query: 113 --------FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVG 159
                   +   S ++II NLP+N+GT L+  WI                + L+FQKE+ 
Sbjct: 121 DAGAETTNWKDKSKVKIIGNLPFNVGTHLMLKWIRQIAPRQGLYEFGRVPMYLMFQKELS 180

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP----I 215
           +RI AQ  S  Y RLSV+     + ++++ I    F P PKV ++V+   P ++P     
Sbjct: 181 DRICAQVGSEEYSRLSVMVQQMCQPSIVYSIPGTAFVPPPKVDASVVAIEPRISPLGDEP 240

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-NLLHQAGIETNLRAENLSIEDFCRITN 274
                  + + +E F +RRK L  ++K LG +   L    I+  +R +NL IE F +ITN
Sbjct: 241 VKDHHYFEFVCRELFSQRRKKLSNTIKTLGKDAESLLGDDIDPKIRTQNLQIEQFVKITN 300

Query: 275 ILTD 278
              +
Sbjct: 301 RYIE 304


>gi|118602555|ref|YP_903770.1| dimethyladenosine transferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567494|gb|ABL02299.1| dimethyladenosine transferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 250

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/255 (34%), Positives = 132/255 (51%), Gaps = 13/255 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQNFL+D  I+ +I  +        ++EIG G G +T  LL     ++ VIE 
Sbjct: 2   HKACKRFGQNFLVDHRIIDRIIATIAPKRDDNLLEIGPGQGAITLPLLDY-VDQLNVIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+    IL+ +     + L + Q D LK D      +  PIR+I NLPYNI + +LF  +
Sbjct: 61  DRNLISILESLKH---SNLIVHQGDVLKFD---LNVVPIPIRVIGNLPYNISSHVLFYLL 114

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +T + QKEV ERI A   S  YGRLSV+        M+F + P  F P+
Sbjct: 115 KNLNK---IKDMTFMLQKEVVERIAANNGSKIYGRLSVMMQAFFDVQMIFIVPPESFNPA 171

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           P+V S V+H  P   P    ++ L+K+ + AF +RRKTL+  LK +  +    Q  I+ +
Sbjct: 172 PRVESAVVHLKPLTQPKTKDIKILEKVVKLAFSQRRKTLKNCLKSILTQ---KQTNIDLS 228

Query: 259 LRAENLSIEDFCRIT 273
            RAE L+I++F  +T
Sbjct: 229 QRAEMLTIDNFITLT 243


>gi|222112630|ref|YP_002554894.1| dimethyladenosine transferase [Acidovorax ebreus TPSY]
 gi|254807865|sp|B9MIF6|RSMA_ACIET RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|221732074|gb|ACM34894.1| dimethyladenosine transferase [Acidovorax ebreus TPSY]
          Length = 253

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 12/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+    R + V+E
Sbjct: 2   KHIPRKRFGQHFLSDSGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLGR-LTVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLF 135
            D+     L+        +L++I+ D LKVDF +      +  IR++ NLPYNI T +LF
Sbjct: 61  LDRDLAARLRQH-----GQLDVIESDVLKVDFAQVAQALNAPKIRVVGNLPYNISTPILF 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + ++             + QKEV +R+ A   +  YGRLSV+  WR     +  + P  F
Sbjct: 116 HLLAHVR---VIADQHFMLQKEVIDRMVAAPATSAYGRLSVMLQWRYAMENVLFVPPESF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P P+V S V+  +PH  P    +  L+++ Q AF +RRK LR +L R            
Sbjct: 173 DPPPRVDSAVVRMVPHEAPEALSMPVLEELVQVAFSQRRKLLRHTLGRWLEARQFAGT-F 231

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +T  RAE + + ++  +    +
Sbjct: 232 DTQRRAEEVPVSEYVALAQKCS 253


>gi|325106005|ref|YP_004275659.1| dimethyladenosine transferase [Pedobacter saltans DSM 12145]
 gi|324974853|gb|ADY53837.1| dimethyladenosine transferase [Pedobacter saltans DSM 12145]
          Length = 283

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 133/266 (50%), Gaps = 10/266 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  KK++GQ+FL D NI +KI +S   +     V+E+G G G L+  LL     +  +I+
Sbjct: 23  VKAKKHLGQHFLTDKNIAQKIVDSLIHTDKYKKVLEVGPGMGVLSDFLLQKTDYETYLID 82

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D + F  L        ++L  I  D L+++F   F    P  II N PYNI +++LF  
Sbjct: 83  IDTESFEFLHKQYPNLGDKL--INADFLQLNFRDIFL--EPFAIIGNFPYNISSQILFKV 138

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P    +  +FQKEV ER  A+  S  YG LSV      K   +F +   VF P
Sbjct: 139 LENRNHVP---EVVGMFQKEVAERCVAKAGSKEYGILSVFLQAYYKCEYLFTVKAGVFNP 195

Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    +    + C  +   +I +  F +RRKTL  +L  +  + L  +  + 
Sbjct: 196 PPKVLSAVIRLTRNETETLECNEKLFWQIVKAGFNQRRKTLSNALSGIIKKELQGEEEVW 255

Query: 257 TNLRAENLSIEDFCRITNILTDNQDI 282
             LRAE L+++DF  +TN++  N+ +
Sbjct: 256 -TLRAERLTVKDFVDLTNLIEQNKSL 280


>gi|299531916|ref|ZP_07045316.1| dimethyladenosine transferase [Comamonas testosteroni S44]
 gi|298720091|gb|EFI61048.1| dimethyladenosine transferase [Comamonas testosteroni S44]
          Length = 253

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 12/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D  I+  I ++     G  ++EIG G   L+Q L+     K+ VIE
Sbjct: 2   KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLG-KLTVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135
            D+     L+       + L++++ D LKVDF         + +R++ NLPYNI + +LF
Sbjct: 61  LDRDLAARLRLR-----DDLDVVESDVLKVDFRALAARLGVTKLRVVGNLPYNISSPILF 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +         +    + QKEV +R+ A   +  YGRLSV+  WR     +  + P  F
Sbjct: 116 HLLEQ---VDVVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGSF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P PKV S V+  IP   P     + L+++ Q AF +RRK LR +L +            
Sbjct: 173 NPPPKVDSAVVRMIPREQPADLDPKLLEELVQVAFSQRRKILRNTLGKWLEAKGF-AGEF 231

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +   RAE + + +F  +   L+
Sbjct: 232 DLQRRAEEVPVAEFEALAAQLS 253


>gi|239947018|ref|ZP_04698771.1| dimethyladenosine transferase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921294|gb|EER21318.1| dimethyladenosine transferase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 303

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 153/305 (50%), Gaps = 40/305 (13%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + ++I P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHAASHQINPLKKYGQNFIFDSSLCDKIVHASNLAENSRVLEIGPGTGGLTRSILQ 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113
                + VIE D++  P+L +I   +PN L II+ DALK++                   
Sbjct: 63  KKPESLTVIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKER 121

Query: 114 -------------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
                              +I   + II+NLPY+IGT L+  W+          ++TL+ 
Sbjct: 122 EAKPITNRRATSNDVGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LINNMTLML 178

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           QKEV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP
Sbjct: 179 QKEVVERICAMPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENP 238

Query: 215 IPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCR 271
               L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ R
Sbjct: 239 PSIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLTPQDYLR 298

Query: 272 ITNIL 276
           I  IL
Sbjct: 299 IAEIL 303


>gi|146329356|ref|YP_001209814.1| rRNA adenine dimethylase [Dichelobacter nodosus VCS1703A]
 gi|226730735|sp|A5EY68|RSMA_DICNV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146232826|gb|ABQ13804.1| rRNA adenine dimethylase [Dichelobacter nodosus VCS1703A]
          Length = 263

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 9/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I   K +GQ+FL D  I+ ++  +        ++EIG G G LT  +L     ++  +E 
Sbjct: 4   IKAVKRLGQHFLRDEGIITQLLAAIDPKPQQKILEIGPGLGALTLPVLERC-HELYAVEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L + ++     L +I+ D L + F +     +PIRII NLPYN+ + +LF+ +
Sbjct: 63  DHRVLQPLSEKAAAV-GILHLIERDILNIHFAEVA--PAPIRIIGNLPYNLSSPILFHCV 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +  +       +  + QKEV +RITA  ++P YGRLSV+     +   +FD+ P  F P 
Sbjct: 120 AQRS---DIVDMHFMLQKEVVDRITAPVDTPAYGRLSVMIQLYCQVEALFDVPPEAFAPP 176

Query: 199 PKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+  IP          +   + + + AF +RRK LR+SL        L    ++
Sbjct: 177 PKVNSAVVRLIPQTQLTWNIESIAHFECVVRSAFSQRRKMLRKSLAAYFEPKELMALDVD 236

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE +    F R+ N L 
Sbjct: 237 PTARAETIDGASFARLANALY 257


>gi|317484454|ref|ZP_07943366.1| dimethyladenosine transferase [Bilophila wadsworthia 3_1_6]
 gi|316924278|gb|EFV45452.1| dimethyladenosine transferase [Bilophila wadsworthia 3_1_6]
          Length = 268

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/261 (31%), Positives = 126/261 (48%), Gaps = 11/261 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK +GQ+FL D     +I +         V+EIG GPG +T ++   G  +  +IEKD
Sbjct: 10  RAKKSLGQHFLKDAKTSARIVDLLRIGPEDRVLEIGPGPGAITGIIHERGPAEFRLIEKD 69

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             +     ++    P  ++++  DAL   +E       P +II+NLPYN+G+ L+++ +S
Sbjct: 70  SYWAAHHAELERPAPA-VQVLNADALAFPWESL---EGPWKIISNLPYNVGSPLMWDIVS 125

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P       + QKEV ER+ A+  +  YG LSV      +    F + P  F P P
Sbjct: 126 RT---PDLTRAVFMVQKEVAERLYAKPGTKDYGALSVWIQSYVRVEWGFVVGPGAFNPPP 182

Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQAGI 255
           KV S V+ FIP      P   ++L  I +  F  RRK L+  L+R G ++    L + GI
Sbjct: 183 KVDSAVVTFIPLPRERHPADPKALSSILKLCFQLRRKQLQSILRRAGRDDTAAALERLGI 242

Query: 256 ETNLRAENLSIEDFCRITNIL 276
               R E L+ E F ++  I 
Sbjct: 243 APEARPETLTPEQFQQLAGIF 263


>gi|212278083|gb|ACJ23056.1| KsgA [Neisseria gonorrhoeae]
          Length = 265

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 128/269 (47%), Gaps = 17/269 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGER------ITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
                      +  + QKEV ER      + A   S  YGRL V+  +     ++ D+ P
Sbjct: 118 EVAD---DVADMHFMLQKEVVERKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPP 174

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             F P+PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L
Sbjct: 175 ESFDPAPKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDL 234

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
              GI    RAE+++ E +  ++N L D 
Sbjct: 235 QAVGISPQDRAEHIAPEKYVALSNYLADK 263


>gi|256820807|ref|YP_003142086.1| dimethyladenosine transferase [Capnocytophaga ochracea DSM 7271]
 gi|256582390|gb|ACU93525.1| dimethyladenosine transferase [Capnocytophaga ochracea DSM 7271]
          Length = 257

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 95/262 (36%), Positives = 137/262 (52%), Gaps = 10/262 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL DLNI +KIA++    +   V+EIGAG G LTQ LL  G   V ++E 
Sbjct: 4   VKAKKHLGQHFLKDLNIAQKIADTLSLKNYKKVVEIGAGMGVLTQFLLKKGVD-VHIVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L+        +  II DD LK D   +   + P  II N PYNI T+++F  +
Sbjct: 63  DKESVDYLEANYPALRGK--IIADDFLKYDVAGYL--AEPFAIIGNFPYNISTQIVFKLL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +   +  +   FQKEV ERI   + S  YG LSVL     + + +F +S  VF P 
Sbjct: 119 ELREYVSEFSGM---FQKEVAERICEHEGSKTYGILSVLVQAFYETSYLFTVSESVFNPP 175

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI  +   +  + C       + + AF +RRKTLR SLK L  +  L Q  I  
Sbjct: 176 PKVKSGVIRLVRKAHFHLDCDERLFFTVVKTAFNQRRKTLRNSLKPLLTDENLKQDPI-F 234

Query: 258 NLRAENLSIEDFCRITNILTDN 279
           + R E L  ++F  IT  +++ 
Sbjct: 235 DKRPEQLPWQEFVFITKKISNQ 256


>gi|315223958|ref|ZP_07865802.1| dimethyladenosine transferase [Capnocytophaga ochracea F0287]
 gi|314946062|gb|EFS98067.1| dimethyladenosine transferase [Capnocytophaga ochracea F0287]
          Length = 257

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 94/262 (35%), Positives = 137/262 (52%), Gaps = 10/262 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL DLNI +KIA++    +   V+EIGAG G LTQ LL      V ++E 
Sbjct: 4   VKAKKHLGQHFLKDLNIAQKIADTLSLKNYKKVVEIGAGMGVLTQFLLKKDVD-VHIVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L+        +  II +D LK D   +   + P  II N PYNI T+++F  +
Sbjct: 63  DKESVAYLEANYPALRGK--IIANDFLKYDVAGYL--AEPFAIIGNFPYNISTQIVFKLL 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               + P +  +   FQKEV ERI   + S  YG LSVL     + + +F +S  VF P 
Sbjct: 119 ELREYVPEFSGM---FQKEVAERICEHEGSKTYGILSVLVQAFYETSYLFTVSESVFNPP 175

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI  +   +  + C       + + AF +RRKTLR SLK L  +  L Q  I  
Sbjct: 176 PKVKSGVIRLVRKTDFHLDCDEGLFFTVVKTAFNQRRKTLRNSLKSLLTDENLKQDPI-F 234

Query: 258 NLRAENLSIEDFCRITNILTDN 279
           + R E L  ++F  IT  +++ 
Sbjct: 235 DKRPEQLPWQEFVFITKKISNQ 256


>gi|220908859|ref|YP_002484170.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425]
 gi|219865470|gb|ACL45809.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425]
          Length = 284

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 139/275 (50%), Gaps = 13/275 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI P+K  GQ++L     L++I  ++      TV+EIG G G LT+ LL    + ++ IE
Sbjct: 3   KIRPRKQFGQHWLRSDRALQRILAAAELSVEDTVLEIGPGRGVLTRSLLDR-VKSLLAIE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRL 133
            D+  +  L+   +   N L ++Q + L+++ EK       I  P +++AN+PYNI   +
Sbjct: 62  IDRDLYSFLQSEFAGK-NNLRLVQGNFLELELEKLLTEETGIGFPNKVVANIPYNITGPI 120

Query: 134 LFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           L   +   A   P  +E + LL QKEV +R+ A  NS  YG LSV   +  +  ++  + 
Sbjct: 121 LEKLLGTIAQPNPQPFELIVLLVQKEVADRLAAHPNSSAYGGLSVRVQYLAQCELICPVP 180

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN-- 248
              F+P PKV S VI   P+  P        L ++ +  F  RRK LR +LK +   +  
Sbjct: 181 AGAFYPPPKVDSAVIRLRPYHPPTGATHPAFLDQLVRMGFATRRKMLRNNLKSVVERDRL 240

Query: 249 --LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             LL Q  +    RAE+LS+  +  ++N+L   + 
Sbjct: 241 SELLQQLDLNPQARAEDLSLSQWINLSNLLEAERS 275


>gi|212278081|gb|ACJ23055.1| truncated KsgA [Neisseria gonorrhoeae]
          Length = 249

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/251 (33%), Positives = 122/251 (48%), Gaps = 11/251 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A   S  YGRL V+  +     ++ D+ P  F P+
Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPA 174

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 175 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 234

Query: 257 TNLRAENLSIE 267
              RAE+++ E
Sbjct: 235 PQDRAEHIAPE 245


>gi|157964820|ref|YP_001499644.1| dimethyladenosine transferase [Rickettsia massiliae MTU5]
 gi|157844596|gb|ABV85097.1| Dimethyladenosine transferase [Rickettsia massiliae MTU5]
          Length = 332

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 106/312 (33%), Positives = 154/312 (49%), Gaps = 40/312 (12%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT      S+    + +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G 
Sbjct: 25  MTYPTMLPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGG 84

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------- 113
           LT+ +L      + VIE D++  P+L +I   +PN L II+ DALK++            
Sbjct: 85  LTRSILQKNPESLTVIETDERCLPLLNEIKECYPN-LNIIKQDALKINLTDLSYDIVNSV 143

Query: 114 --------------------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
                                     +I   + II+NLPY+IGT L+  W+         
Sbjct: 144 GFAYKKLEVKPITNRRATSNDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LI 200

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207
            S+TL+ QKEV ERI A  ++  YGRLSV+     K    FD+ P  F+P PKV S ++ 
Sbjct: 201 TSMTLMLQKEVVERICAMPSTKAYGRLSVICQLIAKVEKCFDVEPTAFYPPPKVYSAIVK 260

Query: 208 FIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENL 264
            IP  NP     +  +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL
Sbjct: 261 LIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENL 320

Query: 265 SIEDFCRITNIL 276
           + +D+ RI  IL
Sbjct: 321 APQDYLRIAEIL 332


>gi|256851971|ref|ZP_05557358.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN]
 gi|260661459|ref|ZP_05862372.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN]
 gi|256615383|gb|EEU20573.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN]
 gi|260547914|gb|EEX23891.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN]
          Length = 297

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 142/284 (50%), Gaps = 20/284 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I++ Y    KK +GQNFL+ LN +  I +++       V+EIG G G+LT+ +L  G
Sbjct: 17  TKAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIKSDDQVLEIGPGIGSLTEQMLLRG 76

Query: 70  ARKVIVIEKDQQFFPILKDISSQ------HPNRLEIIQDDALKVDFEK----FFNISSPI 119
           A KV+  E DQ    IL +   Q        +  +++  D LK DF++    FF+++ PI
Sbjct: 77  A-KVLAYEIDQDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKPI 135

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++F    +D     +ESLTL+ QKEV ER+ A   +  YG L++   
Sbjct: 136 KVVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQ 192

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLR 238
            +    M   +    F P PKV S V+   P    +     E+ + + +  F +RRKTL 
Sbjct: 193 TQMAVKMAVMVDHTNFNPQPKVDSAVVVLKPLAKKVDVGDTENFEHVVKMCFSQRRKTLN 252

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            +LK L       +NLL    +    R E L+I  F  +   L 
Sbjct: 253 NNLKSLVKNGEERKNLLQMLDLPEKARPEELTIGQFISLAKALK 296


>gi|312871246|ref|ZP_07731344.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a]
 gi|312872808|ref|ZP_07732873.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091850|gb|EFQ50229.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1]
 gi|311093260|gb|EFQ51606.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a]
          Length = 295

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%)

Query: 3   MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M+N          + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G
Sbjct: 1   MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107
            G+LT+ LL  GA KV+  E D     IL  ++ +Q  N     R  II  D LK     
Sbjct: 61  IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   +F+++ PI ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   
Sbjct: 120 DIADYFDVNRPISVVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHK 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226
           S  YG L++           F++    F PSPKV S V+   P  + +    E L  +I 
Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           + AF +RRKTL  +LK L       + LL+   +++N+R E LSI  +  ++  + + +
Sbjct: 237 KLAFSQRRKTLNNNLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295


>gi|299141585|ref|ZP_07034721.1| dimethyladenosine transferase [Prevotella oris C735]
 gi|298576921|gb|EFI48791.1| dimethyladenosine transferase [Prevotella oris C735]
          Length = 265

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 84/264 (31%), Positives = 133/264 (50%), Gaps = 12/264 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK +GQ+FL DLNI ++IA++  +   I V+EIG G G LTQ L+T   R+V  +E 
Sbjct: 4   VKAKKNLGQHFLTDLNIARRIADTVDACPDIPVLEIGPGMGVLTQYLVT-KDREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L +   +   R  II +D L++D  K F    P  +  N PY+I +++ F  +
Sbjct: 63  DKESVAFLHENYPEL--RDNIIGEDFLRIDLYKVFE-RRPFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ ++  +  YG LSVL         +F +   VF P 
Sbjct: 120 DYKDLIP---CCTGMIQREVALRMASEPGNKAYGILSVLMQAWYNVEYLFTVDETVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI  + +    + C     K++ +  F +RRK LR S+K++  +     A   T
Sbjct: 177 PKVKSAVIRMMRNEVTDLGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEKPASAEFLT 236

Query: 258 ----NLRAENLSIEDFCRITNILT 277
                 R E LS++ F  +TN++ 
Sbjct: 237 LDVMTKRPEQLSVQQFVELTNLVE 260


>gi|114778951|ref|ZP_01453742.1| dimethyladenosine transferase [Mariprofundus ferrooxydans PV-1]
 gi|114550823|gb|EAU53391.1| dimethyladenosine transferase [Mariprofundus ferrooxydans PV-1]
          Length = 265

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 127/277 (45%), Gaps = 12/277 (4%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M N   + ++   ++    KK +GQ+FL+D   +++IA +        +IEIG GPG +T
Sbjct: 1   MTNDQTNTQSANQNH---AKKALGQHFLMDQQAIRRIAGAIDDGAD--IIEIGPGPGAIT 55

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           ++LL   A  + VIE D +F    +  +  HP  L ++  D +KV      +   P  I 
Sbjct: 56  EVLLAR-ASHLTVIEMDDRFAARWQQHARSHP-TLSVVHGDVMKVLEATVAD-KQPQWIA 112

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYN+   L           P    + L++Q+EV ERI A   S  YG LSVL     
Sbjct: 113 GNLPYNLSGPLTATL----AGIPLSGGMVLMYQREVAERICAGPGSKTYGGLSVLVRHFY 168

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
               +  + P  F P PKV S V+   PH    PC    L++  ++ F  RRKT+  + +
Sbjct: 169 DVKRLLTLPPGAFSPPPKVHSAVVVLTPHHRTPPCDYSILQQTVRKGFAHRRKTIFNNFR 228

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            +   +      I   LR E L    + R+   L +N
Sbjct: 229 GVLDADAFTAIDINPGLRPEQLDYAAWARLALRLQNN 265


>gi|309390027|gb|ADO77907.1| dimethyladenosine transferase [Halanaerobium praevalens DSM 2228]
          Length = 297

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 154/299 (51%), Gaps = 24/299 (8%)

Query: 3   MNNKSHS---LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M NK  +    K IL+ Y +  KK +GQNFL+D NI++ I+ S+       +IEIG G G
Sbjct: 1   MENKIATPSVTKKILNKYNLNLKKSLGQNFLVDQNIIEIISSSAAIKGDEFIIEIGPGIG 60

Query: 60  NLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118
           +LTQ +L  L    ++ +EKD     +L DI ++  N+L +I  DALK+D+ +     +P
Sbjct: 61  SLTQSILNKLKTGNLLAVEKDAAMVEVLNDIFAE-ENKLTLINQDALKIDWPEILEKYNP 119

Query: 119 ----IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
               ++++ANLPY + T ++   + ++      E++  + QKEVGERI A   +  +G L
Sbjct: 120 EKKKVKLLANLPYYVTTPIIMGVLESEI---ELENMVFMVQKEVGERICAGPETKKFGSL 176

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAF 230
           SV   +  +  ++  +  +VF P P V S ++   P+   I        +   +I +  F
Sbjct: 177 SVAVQYYMQPEIIHQVPANVFIPQPNVDSVIVGLAPYPENIYQKEVLNQDFFFQIVKSIF 236

Query: 231 GKRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            +RRKTLR SL R    NL        L+  GI    R E LSI +   I+N +   ++
Sbjct: 237 QQRRKTLRNSLSRSAIINLDRDLVTQALNDEGIGIKKRGEKLSILEMISISNRIYKMRE 295


>gi|308234963|ref|ZP_07665700.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14018]
 gi|311113998|ref|YP_003985219.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14019]
 gi|310945492|gb|ADP38196.1| dimethyladenosine transferase [Gardnerella vaginalis ATCC 14019]
          Length = 296

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/277 (28%), Positives = 130/277 (46%), Gaps = 12/277 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ I +   I P K  GQNF++D   +KKI  +S       V+E+G G G+LT  +L
Sbjct: 21  AADIRRIAAEEGITPTKKFGQNFVIDPGTVKKIVTASKINSNDFVMEVGPGLGSLTLAIL 80

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH-PN---RLEIIQDDALKVDFEKFFNI--SSPIR 120
             GA  +  +E D      L     +  PN   R  +I  DAL+++ +   N+  +    
Sbjct: 81  QAGAN-LTAVEIDPPLAKRLPSTVKEFMPNALERFNVILKDALELNAQDVPNLANAQHFT 139

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T ++   +        +  +    QKEV +R+ AQ  +  YG  SV   W
Sbjct: 140 LVANLPYNVATPIILTLLEKFNNLTSFLVMV---QKEVADRLCAQPGTKTYGTPSVKLAW 196

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLR 238
             ++     I  +VF+P+P V S +++F  +          E + KI   AF +RRKTL 
Sbjct: 197 YGESQKAGLIGRNVFWPAPNVDSALVYFERNNEIREDEQEREKVFKIIDAAFQQRRKTLH 256

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
            +LK +        AGI+   R E L+  +F  +   
Sbjct: 257 SALKGIISNESYDIAGIDPTRRGETLTCAEFLALYKA 293


>gi|193212495|ref|YP_001998448.1| dimethyladenosine transferase [Chlorobaculum parvum NCIB 8327]
 gi|226729768|sp|B3QMU5|RSMA_CHLP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|193085972|gb|ACF11248.1| dimethyladenosine transferase [Chlorobaculum parvum NCIB 8327]
          Length = 274

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H  I  KK +GQNFLLD NI +KI   SG  +G  V+EIG G G L+  +L +      
Sbjct: 7   KHTHIAAKKKLGQNFLLDKNIPRKIVRESGIKEGDLVLEIGPGFGALSTAILEVMP-SFT 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            IEKD +    +++   +HP  + +I+ D LKV  E     S  + ++ N+PY+I + +L
Sbjct: 66  AIEKDPELARFIRE---EHPE-INLIEGDFLKVPLEPLTG-SGKLAVLGNIPYSITSPIL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +         ES TL+ Q EV +RITA   +  YG L+V          +F +   V
Sbjct: 121 FRLLDNR---HLIESATLMMQHEVAQRITAVPGTKEYGILAVQMQAFCDVKYLFKVGRAV 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P+V S VI  +P         E  +   + AF +RRKTL  +LK     + +    
Sbjct: 178 FKPRPEVDSAVIRLVPKAQNPVEDSEGFRTFVRRAFHQRRKTLWNNLKEYYNTSEVPAET 237

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           +   LRAE L++E    +   LT
Sbjct: 238 L--KLRAEALTVEGLIELFEKLT 258


>gi|264680839|ref|YP_003280749.1| dimethyladenosine transferase [Comamonas testosteroni CNB-2]
 gi|262211355|gb|ACY35453.1| dimethyladenosine transferase [Comamonas testosteroni CNB-2]
          Length = 253

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 12/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D  I+  I ++     G  ++EIG G   L+Q L+     K+ VIE
Sbjct: 2   KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLG-KLTVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135
            D+     L+       + L++++ D LKVDF         + +R++ NLPYNI + +LF
Sbjct: 61  LDRDLAARLRLR-----DDLDVVESDVLKVDFRALAARLGVAKLRVVGNLPYNISSPILF 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +         +    + QKEV +R+ A   +  YGRLSV+  WR     +  + P  F
Sbjct: 116 HLLEQ---VDVVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGSF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P PKV S V+  IP   P     + L+++ Q AF +RRK LR +L +            
Sbjct: 173 NPPPKVDSAVVRMIPREQPADLDPKLLEELVQVAFSQRRKILRNTLGKWLEARGF-AGEF 231

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +   RAE + + +F  +   L+
Sbjct: 232 DLQRRAEEVPVAEFEALAAQLS 253


>gi|51473851|ref|YP_067608.1| dimethyladenosine transferase [Rickettsia typhi str. Wilmington]
 gi|62900511|sp|Q68W66|RSMA_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|51460163|gb|AAU04126.1| dimethyladenosine transferase [Rickettsia typhi str. Wilmington]
          Length = 268

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 98/269 (36%), Positives = 147/269 (54%), Gaps = 9/269 (3%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + ++I P K  GQNF+ D ++  KI  +S   +   VIEIG G G LT+ +L 
Sbjct: 3   PSIAKHAASHQINPLKKHGQNFIFDSSLCDKIIRASNISENSKVIEIGPGVGGLTRSILH 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              + + VIE D++  P+L +I   +PN L II+ D LK++      I   + +I+NLPY
Sbjct: 63  KNPKSLTVIEIDERCIPLLNEIQGYYPN-LNIIKQDVLKINLTDL--IYDKVTVISNLPY 119

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +IGT L+   +          ++ L+ QKEV ERI A  ++  YGRLSV+     K    
Sbjct: 120 HIGTELVIRLLKEAK---LITNMILMLQKEVVERICAMPSTKAYGRLSVICQIVAKVEKC 176

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246
           FD++P  F+P PKV S ++  IP  NP    L   +++IT+  F  RRK ++ SL+ L  
Sbjct: 177 FDVAPTAFYPHPKVYSAIVKIIPLENPPSIALINKVEQITKLVFAGRRKMIKSSLRNLVP 236

Query: 247 E--NLLHQAGIETNLRAENLSIEDFCRIT 273
               +L Q  I  N RAENL+ +D+ RI 
Sbjct: 237 NIHEVLTQLKINNNDRAENLTPKDYLRIA 265


>gi|255039492|ref|YP_003090113.1| dimethyladenosine transferase [Dyadobacter fermentans DSM 18053]
 gi|254952248|gb|ACT96948.1| dimethyladenosine transferase [Dyadobacter fermentans DSM 18053]
          Length = 266

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 126/260 (48%), Gaps = 17/260 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           K+  KK++GQ+FL DLNI ++I +  SG      V+EIG G G LTQ LL        VI
Sbjct: 10  KVRAKKHLGQHFLKDLNIAQRIVDGLSGHGGYDRVLEIGPGMGVLTQFLLPKTDFSTYVI 69

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D +    L+        R  II  D LK +  + F       +I N PYNI +++ F 
Sbjct: 70  EIDTESVAYLEKHYPDLAPR--IIAGDFLKFNAGEHF--PGKFAVIGNFPYNISSQIFFR 125

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    +  + QKEV +RI +   +  YG LSVL         +  + P  F 
Sbjct: 126 ALEIRDRIP---EIVCMLQKEVAQRIASPPGNKDYGILSVLLQAFYDIDYLVSVPPGAFD 182

Query: 197 PSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S VI    + ++ + C  +   ++ + AF +RRKTLR +LK +G      +   
Sbjct: 183 PPPKVQSGVIRLRRNGVSALECDEKLFFRVVKTAFNQRRKTLRNALKPVG------EIPY 236

Query: 256 ET--NLRAENLSIEDFCRIT 273
               N RAE LS++DF  +T
Sbjct: 237 HPLLNKRAEQLSVQDFVTLT 256


>gi|329920627|ref|ZP_08277314.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G]
 gi|328935885|gb|EGG32345.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G]
          Length = 295

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%)

Query: 3   MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M+N          + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G
Sbjct: 1   MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107
            G+LT+ LL  GA KV+  E D     IL  ++ +Q  N     R  II  D LK     
Sbjct: 61  IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   +F+++ PI ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   
Sbjct: 120 DIADYFDVNQPIIVVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHK 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226
           S  YG L++           F++    F PSPKV S V+   P  + +    E L  +I 
Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           + AF +RRKTL  +LK L       + LL+   +++N+R E LSI  +  ++  + + +
Sbjct: 237 KLAFSQRRKTLNNNLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295


>gi|167769167|ref|ZP_02441220.1| hypothetical protein ANACOL_00490 [Anaerotruncus colihominis DSM
           17241]
 gi|167668807|gb|EDS12937.1| hypothetical protein ANACOL_00490 [Anaerotruncus colihominis DSM
           17241]
          Length = 303

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 136/281 (48%), Gaps = 16/281 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L  +     K +GQNFL++  +  ++AE  G+  G+ V+EIGAG G LT  L    
Sbjct: 28  IRDVLGRHGFTFSKALGQNFLINPTVCPRMAEQGGARPGVGVLEIGAGVGVLTAELARR- 86

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLP 126
           A +V+ +E D +  P+L +  +   N ++II  D L+VD             I + ANLP
Sbjct: 87  ADRVVCVEIDARLLPVLAETLAGFDN-IKIINADVLQVDLHALIAEQFAGLDIVVCANLP 145

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I + ++   +         +S+T++ QKE  +R+ AQ  +   G +S+   + ++  M
Sbjct: 146 YYITSPVVMALLEQRLP---VQSVTVMVQKEAAQRLCAQPGTRGVGAVSIAVRYFSEPHM 202

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQS---- 240
           +F +S   F PSP V S VI       P     E     K+ + AF  RRKTL       
Sbjct: 203 LFAVSRGSFLPSPDVDSAVIRLDIRSAPAVDAGEPAVFFKVVRAAFSMRRKTLLNCLSSG 262

Query: 241 --LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             L +     LL +AG+ +  RAE LS+E F  I   +  +
Sbjct: 263 LGLSKGNTSALLARAGVPSGARAEQLSMEQFAAIARAVQAH 303


>gi|315654032|ref|ZP_07906948.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195]
 gi|315488728|gb|EFU78374.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195]
          Length = 295

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%)

Query: 3   MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M+N          + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G
Sbjct: 1   MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107
            G+LT+ LL  GA KV+  E D     IL  ++ +Q  N     R  II  D LK     
Sbjct: 61  IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   +F+++ PI ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   
Sbjct: 120 DIADYFDVNRPIIVVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHK 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226
           S  YG L++           F++    F PSPKV S V+   P  + +    E L  +I 
Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236

Query: 227 QEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           + AF +RRKTL  +LK L  +      LL+   +++N+R E LSI  +  ++  + + +
Sbjct: 237 KLAFSQRRKTLNNNLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295


>gi|78187147|ref|YP_375190.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273]
 gi|119365044|sp|Q3B3D4|RSMA_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78167049|gb|ABB24147.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273]
          Length = 273

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 133/263 (50%), Gaps = 11/263 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H +I  KK +GQNFL D NI +KI  +SG+     ++EIG G G LT+ +L +      
Sbjct: 7   KHTEIAVKKKLGQNFLTDRNITRKIVAASGAGSQDRILEIGPGFGALTREILEVCP-AFT 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+EKD+     ++    ++P +L++I+ D L +D E+      P+R++ N+PY+I T +L
Sbjct: 66  VVEKDRALAAFIR---QEYP-QLQLIEADFLDIDLERLA-AGGPLRVLGNIPYSITTPIL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +          S TL+ Q EV  R+ A  ++  YG L+V          +F +   V
Sbjct: 121 FKLLENRR---SITSATLMMQHEVAARLVATPSTKEYGILAVQLQTFCDVRYLFKVGRKV 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P V S VI  +P  N      ++  +  + AF +RRKTL  +LK       + +  
Sbjct: 178 FRPQPNVDSAVISMVPKKNVAVEDAQAFSRFVRTAFHQRRKTLYNNLKDAYMLQAVDEGT 237

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           +   LRAE LSIE    +  ++ 
Sbjct: 238 L--KLRAEALSIEKLADLFKLVQ 258


>gi|291295556|ref|YP_003506954.1| dimethyladenosine transferase [Meiothermus ruber DSM 1279]
 gi|290470515|gb|ADD27934.1| dimethyladenosine transferase [Meiothermus ruber DSM 1279]
          Length = 276

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 90/272 (33%), Positives = 138/272 (50%), Gaps = 18/272 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               ++ +L  Y +   K  GQNFL++ + L++I E+ G   G TV+E+G G G LT+ L
Sbjct: 13  SPKVVRDLLERYGLKADKRFGQNFLVERSYLQQIVEAVGLTPGQTVVEVGPGLGTLTRAL 72

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              GAR V+ IE D++   +  +  +  P  ++II  DAL  D+              NL
Sbjct: 73  AEAGAR-VVSIEMDRRLEAVYAETLAGLP--VQIIWADALSFDWSSL---PPQSLFAGNL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYNI T L+   + ++     +  +  L QKEV  R+ A+  +P YG LS+   +   A 
Sbjct: 127 PYNIATPLITQLLLSNR----FRRIVALVQKEVALRMVARPATPAYGLLSLRVQYHAAAR 182

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            + D+ P  FFP PKVTS+VI   P+  P       L ++ + AF +RRKTL  +LK  G
Sbjct: 183 RIVDVPPGAFFPPPKVTSSVICLQPNNRP---DHPGLFRLIEAAFAQRRKTLVNALKAAG 239

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRI 272
                 +  L   G+  N+RAE L +  F ++
Sbjct: 240 YPPERVKRGLEAMGLPDNVRAEALGLPQFEQM 271


>gi|313891618|ref|ZP_07825225.1| dimethyladenosine transferase [Dialister microaerophilus UPII
           345-E]
 gi|313119896|gb|EFR43081.1| dimethyladenosine transferase [Dialister microaerophilus UPII
           345-E]
          Length = 284

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 135/269 (50%), Gaps = 13/269 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           ++  + I  K  +GQNFL+  +I+K+IA ++   +   V+EIG+G G LTQ L   GA  
Sbjct: 15  LMKRFGIRTKHKLGQNFLIRPDIVKEIAYAAELNENSNVMEIGSGIGTLTQALAQTGAN- 73

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           VI  E D+    IL+     + N ++II +D LK D  K  +      + ANLPY I T 
Sbjct: 74  VISFEIDKSLENILQHTLEPYTN-VKIIFEDVLKADLYKILD-GKNWSVAANLPYYITTP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +L   + +D       +   + QKEV ERI+A+  +  YG LS+   +  +   + DI P
Sbjct: 132 ILLYLVQSDFP---ISTFVFMMQKEVAERISAKPGTKAYGALSIAVQFYCEVEHIMDIPP 188

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGE--- 247
             F P P VTST++       P       +   ++ +  FG+RRK    ++K  G     
Sbjct: 189 TAFIPRPAVTSTILKMKKRDKPAVEVTDKKLFFRLVKMGFGQRRKVFTNAMKSGGIPKDM 248

Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITN 274
              +L +AGI+   R E  S+E++ R+ N
Sbjct: 249 INEILFKAGIDGKRRGETFSMEEYARLAN 277


>gi|309803693|ref|ZP_07697783.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d]
 gi|309804982|ref|ZP_07699040.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c]
 gi|309806700|ref|ZP_07700695.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b]
 gi|312874063|ref|ZP_07734098.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d]
 gi|325913223|ref|ZP_08175592.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B]
 gi|308164291|gb|EFO66548.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d]
 gi|308165742|gb|EFO67967.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c]
 gi|308166880|gb|EFO69064.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b]
 gi|311090403|gb|EFQ48812.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d]
 gi|325477487|gb|EGC80630.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B]
          Length = 295

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%)

Query: 3   MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M+N          + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G
Sbjct: 1   MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107
            G+LT+ LL  GA KV+  E D     IL  ++ +Q  N     R  II  D LK     
Sbjct: 61  IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   +F+++ PI ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   
Sbjct: 120 DIADYFDVNRPIIVVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISASHK 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226
           S  YG L++           F++    F PSPKV S V+   P  + +    E L  +I 
Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236

Query: 227 QEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           + AF +RRKTL  +LK L       + LL+   +++N+R E LSI  +  ++  + + +
Sbjct: 237 KLAFSQRRKTLNNNLKSLIKNKDSRQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295


>gi|325288376|ref|YP_004264557.1| dimethyladenosine transferase [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963777|gb|ADY54556.1| dimethyladenosine transferase [Syntrophobotulus glycolicus DSM
           8271]
          Length = 297

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 95/297 (31%), Positives = 149/297 (50%), Gaps = 23/297 (7%)

Query: 3   MNNKSHSLK--TILSHY-------KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53
           MNN S  LK    L  Y           +K +GQNFL+   +++ I  + G      V+E
Sbjct: 1   MNNSSKDLKRKETLLQYTKRVLRGGKTIRKSLGQNFLVSAEVVESIVAAIGENHFWPVVE 60

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
           IG+GPG LT+ L      ++  +E DQ+   IL++     P +++I+Q DALK++ E+ +
Sbjct: 61  IGSGPGGLTRALAE-KVDQLWAVELDQENVEILREEMP--PEKVKILQADALKLNLEELW 117

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                  ++ NLPY I   LL +++   +       + ++ QKEV ER+TA+     YG 
Sbjct: 118 GKQKGW-LVGNLPYYITNPLLMHFLEQSSN---LFGMIVMVQKEVAERMTAKPGGKEYGI 173

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGK 232
           LS+       A ++F++ P  F P PKVTS V+       P   C  +   +I + AF +
Sbjct: 174 LSIAVQLAADARILFEVPPTSFHPQPKVTSAVVRLDIRPFPDFDCERDEFFRIVKAAFAQ 233

Query: 233 RRKTLRQSLK---RLGGEN---LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           RRKTL  +L     +  E     L +AG+E   RAE LSI DF  +T  +T  + ++
Sbjct: 234 RRKTLANALSAGLHISKEEVITALGKAGLEGKRRAETLSIADFQEVTRQMTGRKQVS 290


>gi|325278903|ref|YP_004251445.1| Ribosomal RNA small subunit methyltransferase A [Odoribacter
           splanchnicus DSM 20712]
 gi|324310712|gb|ADY31265.1| Ribosomal RNA small subunit methyltransferase A [Odoribacter
           splanchnicus DSM 20712]
          Length = 281

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 127/269 (47%), Gaps = 18/269 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK +GQ+FL D NI +KI +S   +    ++EIG G G LT+ L    A  V  I+ 
Sbjct: 24  VRAKKSLGQHFLRDQNIARKITDSLLPVTRD-ILEIGPGMGVLTRHLFANPAFSVRAIDI 82

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           DQ+    L     ++ +R  I+  D LK D  +++    P  +I NLPYNI +++ F  I
Sbjct: 83  DQESIDYLHQELPEYQDR--ILYGDFLKTDIRQYYQ--EPFSVIGNLPYNISSQIFFRII 138

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ERI A   S  YG LSV          +F +   VF P 
Sbjct: 139 ENR---HLVRQVVCMIQKEVAERIAASPGSKTYGILSVFLQAFYHIEYLFTVGEKVFDPP 195

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE- 256
           PKV S VI    +    + C  +    + +  F +RRKTLR S++ +         G + 
Sbjct: 196 PKVKSAVIRLTRNERVELGCEEKLFFNVVKTGFNQRRKTLRNSIRGIIPP------GFDS 249

Query: 257 --TNLRAENLSIEDFCRITNILTDNQDIA 283
              NLR E L I DF ++   +  N++I 
Sbjct: 250 PYLNLRPEQLGITDFLQLCQDIEKNRNIG 278


>gi|160947751|ref|ZP_02094918.1| hypothetical protein PEPMIC_01686 [Parvimonas micra ATCC 33270]
 gi|158446885|gb|EDP23880.1| hypothetical protein PEPMIC_01686 [Parvimonas micra ATCC 33270]
          Length = 280

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 144/281 (51%), Gaps = 14/281 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +K I   +     K  GQNFL D NIL+KI E S       VIEIG G G LT+ L
Sbjct: 5   KLSVIKEICDKFGFSFSKNFGQNFLTDRNILEKIVEVSAVGKDYGVIEIGPGFGVLTKFL 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---SPIRII 122
           L   A KV+ IE D +   +L    S++ N  E +Q DALK+D +K          I ++
Sbjct: 65  LE-KAGKVVSIEIDTRLKEVLDYTLSEYDN-FEFVQSDALKIDLKKLIEEKFTQKKIVVV 122

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T ++   + +D      ES+T++ QKEV +R+ A +NS     +S+   +  
Sbjct: 123 ANLPYYVTTPIITKLLESDL---DLESITIMVQKEVAQRLVADENSKDNSSISLFVKYYA 179

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            A + F +S +VF P+P V S+V++            +++ K+ +  F  RRKT+  S  
Sbjct: 180 DANIAFSVSRNVFVPAPNVDSSVVNMKLKKEKFEY-EKTMFKLIKNGFENRRKTILNSFC 238

Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           + G E      +L +  I+T +RAE LS++DF  I     +
Sbjct: 239 KSGIEKEKIIKILEKLDIDTRIRAEKLSLKDFKNIAREYEN 279


>gi|118088399|ref|XP_426165.2| PREDICTED: similar to transcription factor B1, mitochondrial
           [Gallus gallus]
          Length = 350

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 141/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++  I+  +++  +K + QNFLLDL +  KI   +G L    V E+G GPG +T+ +
Sbjct: 14  PLPTVGEIIKLFRLRAQKELSQNFLLDLRLTDKIVRQAGKLKNAYVCEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  G  +++++EKD +F P L+ +S   P ++ I+  D L    EK F         +  
Sbjct: 74  LNAGVEQLLLVEKDTRFIPGLQMLSEAAPGKVRIVHGDILTYKMEKAFPNHLKKNWEDEP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171
             I II NLP+++ T L+  W+   +    PF      +TL FQKEV ER+TA       
Sbjct: 134 PNIHIIGNLPFSVSTPLIVKWLENVSKRDGPFIYGRTQMTLTFQKEVAERLTANTGGKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS+++         F I    F P P V   V+HF P + P I    E ++K+ Q  F
Sbjct: 194 SRLSIMSQHLCTVDNCFVIPGQAFVPKPDVDVAVVHFTPLVQPKIQQPFELVEKVVQSVF 253

Query: 231 GKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK   + ++ L          E L+  A ++  LR   L++  F  + N      D
Sbjct: 254 QFRRKYCYRGVEILFPERERLKKTEQLMMAADVDPTLRPFQLTMAHFRNLCNTYRKMCD 312


>gi|73748246|ref|YP_307485.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1]
 gi|119365021|sp|Q3ZZE6|RSMA_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|73659962|emb|CAI82569.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1]
          Length = 291

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 138/271 (50%), Gaps = 15/271 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y +  +K +GQ+FL+   +L KI  ++      TVIE+G G G LT+ LL   A
Sbjct: 20  KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGALTEELLKR-A 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +VI +E D +    L +    +PN   +I  D LK   E+      P +++ANLPY I 
Sbjct: 79  GQVIAVELDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQDVPYKLVANLPYYIT 137

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +L  ++ A   P   ES+ ++ QKEV + I A+      G L++   +    +++  +
Sbjct: 138 SAVLRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTGDM--GLLTLSVRFYGNPSLVSVV 192

Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246
               F+P P+V S ++   IP    +    E    K+ +  FG RRKTL  +L +  G  
Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRIT 273
                +LL+ AGI+   RAE LS+E++ ++ 
Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKLC 283


>gi|320010315|gb|ADW05165.1| dimethyladenosine transferase [Streptomyces flavogriseus ATCC
           33331]
          Length = 290

 Score =  248 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 121/279 (43%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL
Sbjct: 12  PADIRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V+ +E D      L            +R  ++  DA+ V         +P  ++
Sbjct: 72  E-AADRVVAVEIDDVLAGALPATVAARLPGRADRFALVHSDAMLVTE---LPGPAPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L   +      P  E   ++ Q EV +R+ A+  +  YG  SV   W  
Sbjct: 128 ANLPYNVAVPVLLTMLER---FPSIERTLVMVQAEVADRLAARPGNKVYGVPSVKANWYA 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
                  I   VF+P+P V S ++       PI        +  +   AF +RRKTLR +
Sbjct: 185 DVKRAGSIGRTVFWPAPNVDSGLVSLARRTEPIRTTASRTEVFAVVDAAFAQRRKTLRAA 244

Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274
           L          E  L  AGI    R E L++E+F  I  
Sbjct: 245 LSGWAGSAPAAEAALTAAGISPQARGEALTVEEFAAIAE 283


>gi|332798095|ref|YP_004459594.1| Ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter
           sp. Re1]
 gi|332695830|gb|AEE90287.1| Ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter
           sp. Re1]
          Length = 276

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 132/279 (47%), Gaps = 18/279 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  Y I   K +GQ+FL+D   L  + E++       V+EIG G G LT  L T  A++V
Sbjct: 1   MKKYNIKADKRLGQHFLIDSRPLLSMIEAAQLSPEDEVLEIGPGLGVLTLELGTR-AKRV 59

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGT 131
           + +EKD+Q  P+L D++    N + I+++D LK+D EK          ++IANLPY I  
Sbjct: 60  VAVEKDRQLIPVLDDLTRDFKN-ICILEEDVLKLDLEKMSESLFGGRFKVIANLPYYITN 118

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   I             L+ QKEV +R+TA      YG LS+         M+  I 
Sbjct: 119 PIIMKIIENRNMVTL---AVLMVQKEVAQRLTACPGKKDYGILSIAVKLYADVNMICTIG 175

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGG--- 246
              F P PKV S V+       P           K+ + AFG+RRKT++ SLK       
Sbjct: 176 RESFLPPPKVESAVVRLTLRQEPRVQLKDESFFFKVVEAAFGERRKTIKNSLKSRLALAG 235

Query: 247 ------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                 +  L  AGI+   R E LSIE++ R+   L  +
Sbjct: 236 TDLDIIDKALEAAGIDALRRGETLSIEEYARLAEELQRH 274


>gi|325283380|ref|YP_004255921.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus
           proteolyticus MRP]
 gi|324315189|gb|ADY26304.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus
           proteolyticus MRP]
          Length = 282

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 93/277 (33%), Positives = 147/277 (53%), Gaps = 18/277 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               +K +++ + I P K +GQNFL+D NIL+ IA++ G+ +G+ V+E+G G G LT+ L
Sbjct: 15  SPARVKDLMARHGIRPTKSLGQNFLIDGNILRAIADAGGAAEGVRVLEVGPGLGVLTREL 74

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              GA +V  +EKDQ   P+L++  +     + I+  DAL+ D+       +  R+IANL
Sbjct: 75  AERGA-QVTTLEKDQGLRPVLEETLAGLD--VNIVWGDALEFDYASL---PAGTRVIANL 128

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I   LL  ++ A    P   S T+L QKEV +R+ +Q    +YG L+ L        
Sbjct: 129 PYYITGPLLSRFMRA----PSIVSATVLVQKEVAQRLASQPGDDNYGFLTALAHLYGTVR 184

Query: 186 MMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            + D+    F P+P VTS+V+        P P   E+  ++   A   RRKTLR +LK  
Sbjct: 185 PVRDVPKGSFIPAPAVTSSVVRLDFDRERPQPS--EAYIRLIDAALHHRRKTLRNNLKMA 242

Query: 245 G-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           G      E  L  AG+  ++RAE++ +    ++ + L
Sbjct: 243 GHPVDRIEAALEAAGLRPDVRAEDVPLAQMRQLADAL 279


>gi|310823436|ref|YP_003955794.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1]
 gi|309396508|gb|ADO73967.1| Dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1]
          Length = 278

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 130/277 (46%), Gaps = 17/277 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + IL  + +  K   GQNFL D   L+ IA++     G  V+E+G G G+LT+ L   
Sbjct: 3   SPRDILKRHGLHAKYSWGQNFLGDERALQGIADALALRPGEPVVELGPGLGHLTRFLAAT 62

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GA +V  +E+D+    +L+      P  + ++  +A  VDF +   +   + ++ NLPY+
Sbjct: 63  GA-QVTAVERDRDMISVLEK--EAIPG-VRVVAGNAATVDFAQAAGV-PQVAVVGNLPYH 117

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + + +LF  +                QKEV ER+ A+  +  YG LSVL G       +F
Sbjct: 118 LTSSILFQVLDQRAQ---VSRAVFTLQKEVVERLAAEPGTRDYGLLSVLLGLHFGIEHLF 174

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKR--- 243
            +   +F P PKV S V+      +P       E   ++ + +F  RRKTL  SLK    
Sbjct: 175 TLESRLFHPPPKVDSAVVRLTRLASPLAPVVDEERFTRVVKASFAHRRKTLLNSLKSDRT 234

Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276
           L         L  AGI+   RAE LS ++F  +   L
Sbjct: 235 LATPEQYVHALEAAGIDPMRRAETLSPQEFAALERGL 271


>gi|332705358|ref|ZP_08425436.1| dimethyladenosine transferase [Lyngbya majuscula 3L]
 gi|332355718|gb|EGJ35180.1| dimethyladenosine transferase [Lyngbya majuscula 3L]
          Length = 282

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 131/270 (48%), Gaps = 13/270 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  +K   Q++L     L +I  ++       ++EIG G G LTQ LL    + V+ +E 
Sbjct: 3   LKARKKFAQHWLRSEEALNQIVTAANLQKSDRILEIGPGTGILTQRLLPF-VQSVVAVEI 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRLL 134
           D+    +L     +  N L ++Q D L +D +       N   P +++AN+PYNI   +L
Sbjct: 62  DRDLCRLLVKKLGKIDNFL-LLQGDFLSLDLDTLLANFSNFQKPNKVVANIPYNITGPIL 120

Query: 135 FNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
              +   T P  P ++ + LL QKEV +R+ A+ +S  +G LSV   +  +  ++ D+  
Sbjct: 121 EKLLGTITQPAVPGFDLIVLLVQKEVAQRLYAKPSSRQFGALSVRVQYLAECELICDVPG 180

Query: 193 HVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248
             F P PKV S V+   P    P       L+ + +  FG +RK LR +LK +   +   
Sbjct: 181 SAFSPPPKVDSAVVRLHPSLAEPPASDPRCLETLLKLGFGSKRKMLRNNLKSVIERDRIT 240

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNILT 277
            LL Q  I    RAE+LS+  +  + N +T
Sbjct: 241 QLLEQLEISPQARAEDLSVAQWIALANQIT 270


>gi|300088594|ref|YP_003759116.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528327|gb|ADJ26795.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 306

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 144/283 (50%), Gaps = 16/283 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +L  + +  +K +GQNFL+D  +L KI  ++G     TV+E+G GPG +T  L 
Sbjct: 32  KTEVRRLLDSHGLSARKGLGQNFLIDRGVLDKIVRAAGIETADTVVEVGPGPGVMTAALA 91

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
              A +VI +E D      L++   Q  N +++I  D L +   +    S P +++ANLP
Sbjct: 92  E-KAGQVIAVELDFGMVAALRETVGQRSN-VKVIAGDILDISPSELTGAS-PYKVVANLP 148

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I + +L +++ A   P    SLT++ QKEV  +ITAQ   P    L++   +  +  +
Sbjct: 149 YYITSPVLRHFLEASHRPS---SLTVMVQKEVARQITAQP--PEMSLLALGVQFFGRPRV 203

Query: 187 MFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-R 243
           +  +    F+P+PKV S ++H    P     P   +   ++ +  FG RRK L  +L   
Sbjct: 204 VSYVPAGCFYPAPKVASAILHIEVFPERKLPPKQEKGFFRLARAGFGTRRKQLANALSGG 263

Query: 244 LGGENL-----LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           LG +       L QAGI    RAE LSI+++  +  + + + D
Sbjct: 264 LGADKANVIQYLKQAGIVPERRAETLSIDEWLALREVWSFDDD 306


>gi|115372809|ref|ZP_01460115.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1]
 gi|115370290|gb|EAU69219.1| dimethyladenosine transferase [Stigmatella aurantiaca DW4/3-1]
          Length = 286

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 130/279 (46%), Gaps = 17/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
             S + IL  + +  K   GQNFL D   L+ IA++     G  V+E+G G G+LT+ L 
Sbjct: 9   VESPRDILKRHGLHAKYSWGQNFLGDERALQGIADALALRPGEPVVELGPGLGHLTRFLA 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             GA +V  +E+D+    +L+      P  + ++  +A  VDF +   +   + ++ NLP
Sbjct: 69  ATGA-QVTAVERDRDMISVLEK--EAIPG-VRVVAGNAATVDFAQAAGV-PQVAVVGNLP 123

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y++ + +LF  +                QKEV ER+ A+  +  YG LSVL G       
Sbjct: 124 YHLTSSILFQVLDQRAQ---VSRAVFTLQKEVVERLAAEPGTRDYGLLSVLLGLHFGIEH 180

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKR- 243
           +F +   +F P PKV S V+      +P       E   ++ + +F  RRKTL  SLK  
Sbjct: 181 LFTLESRLFHPPPKVDSAVVRLTRLASPLAPVVDEERFTRVVKASFAHRRKTLLNSLKSD 240

Query: 244 --LGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276
             L         L  AGI+   RAE LS ++F  +   L
Sbjct: 241 RTLATPEQYVHALEAAGIDPMRRAETLSPQEFAALERGL 279


>gi|329122105|ref|ZP_08250713.1| dimethyladenosine transferase [Dialister micraerophilus DSM 19965]
 gi|327466912|gb|EGF12428.1| dimethyladenosine transferase [Dialister micraerophilus DSM 19965]
          Length = 286

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 135/269 (50%), Gaps = 13/269 (4%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           ++  + I  K  +GQNFL+  +I+K+IA ++   +   V+EIG+G G LTQ L   GA  
Sbjct: 17  LMKRFGIRTKHKLGQNFLIRPDIVKEIAYAAELNENSNVMEIGSGIGTLTQALAQTGAN- 75

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           VI  E D+    IL+     + N ++II +D LK D  K  +      + ANLPY I T 
Sbjct: 76  VISFEIDKSLENILQHTLEPYTN-VKIIFEDVLKADLYKILD-GKNWSVAANLPYYITTP 133

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +L   + +D       +   + QKEV ERI+A+  +  YG LS+   +  +   + DI P
Sbjct: 134 ILLYLVQSDFP---ISTFVFMMQKEVAERISAKPGTKAYGALSIAVQFYCEVEHIMDIPP 190

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGE--- 247
             F P P VTST++       P       +   ++ +  FG+RRK    ++K  G     
Sbjct: 191 TAFIPRPAVTSTILKMKKRDKPAVEVNDKKLFFRLVKMGFGQRRKVFTNAMKSGGIPKDM 250

Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITN 274
              +L +AGI+   R E  S+E++ R+ N
Sbjct: 251 INEILFKAGIDGKRRGETFSMEEYARLAN 279


>gi|282859175|ref|ZP_06268297.1| dimethyladenosine transferase [Prevotella bivia JCVIHMP010]
 gi|282587994|gb|EFB93177.1| dimethyladenosine transferase [Prevotella bivia JCVIHMP010]
          Length = 267

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 131/264 (49%), Gaps = 11/264 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL+I K+IA++  +   I ++EIG G G LTQ L+    R+V  +E 
Sbjct: 4   VKPKKNLGQHFLTDLSIAKRIADTVDAYPEIPILEIGPGMGVLTQYLVE-KPREVKAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +   +      II  D LK+D  + F+      +  N PY+I +++ F  +
Sbjct: 63  DSESVAFLYERFPKLHEN--IIGKDFLKMDLNEIFD-GKQFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ A   +  YG LSVL         +F +  HVF P 
Sbjct: 120 DYKELIP---CCTGMIQREVALRMAATPGNKAYGILSVLIQAWYDVEYLFTVDEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE- 256
           PKV S V+  + +    + C     K++ +  F +RRK LR SLK++     + +   E 
Sbjct: 177 PKVKSAVVRMMRNNVTDLGCDEILFKRLIKTVFNQRRKMLRVSLKQMMNNEKVSEGFFEQ 236

Query: 257 --TNLRAENLSIEDFCRITNILTD 278
                R E LSIE F  +TNI+ +
Sbjct: 237 EMMTKRPEQLSIEQFVELTNIVGE 260


>gi|238855589|ref|ZP_04645891.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3]
 gi|260664781|ref|ZP_05865632.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US]
 gi|282932725|ref|ZP_06338133.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1]
 gi|238831806|gb|EEQ24141.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3]
 gi|260561264|gb|EEX27237.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US]
 gi|281303135|gb|EFA95329.1| dimethyladenosine transferase [Lactobacillus jensenii 208-1]
          Length = 294

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 142/284 (50%), Gaps = 20/284 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K I++ Y    KK +GQNFL+ LN +  I +++       V+EIG G G+LT+ +L  G
Sbjct: 13  TKAIMNRYLGFAKKNLGQNFLISLNKINDILDAAEIDGDDQVLEIGPGIGSLTEQMLLRG 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQ------HPNRLEIIQDDALKVDFEK----FFNISSPI 119
           A KV+  E DQ    IL +   Q        +  +++  D LK DF+     FF+++ P+
Sbjct: 73  A-KVLAYEIDQDLPEILHNELPQKIGDKYLDDVFKLVMKDILKADFKADIGNFFDLNKPV 131

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T ++F    +D     +ESLTL+ QKEV ER+ A   +  YG L++   
Sbjct: 132 KVVANLPYYITTPIIFALAKSDLA---FESLTLMMQKEVAERLCASSGNKEYGPLTIFVQ 188

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLR 238
            +    M   +    F P PKV S V+   P +  +     ++   + +  F +RRKTL 
Sbjct: 189 TQMSVKMAVMVDHTNFNPQPKVDSAVVVLKPLVQKVDVGDTDNFDHVVKMCFSQRRKTLN 248

Query: 239 QSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            +LK L       + LL    +   +R E LSI+ F  +   L 
Sbjct: 249 NNLKSLVKDSEERKKLLQMLDLPEKVRPEELSIDQFIGLAKALK 292


>gi|239818231|ref|YP_002947141.1| dimethyladenosine transferase [Variovorax paradoxus S110]
 gi|259494262|sp|C5CS95|RSMA_VARPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|239804808|gb|ACS21875.1| dimethyladenosine transferase [Variovorax paradoxus S110]
          Length = 255

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 84/260 (32%), Positives = 132/260 (50%), Gaps = 13/260 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            I +K  GQ+FL D  I+  I +      G  ++EIG G   LTQ L+    R + VIE 
Sbjct: 3   HIARKRFGQHFLSDGGIIDAIVQEIAPQPGDAMVEIGPGLAALTQPLVERLGR-LTVIEL 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNW 137
           D+     L++    HP +LE+I+ D LKVDF       ++P+R++ NLPYNI T +LF+ 
Sbjct: 62  DRDLAKRLRE----HP-QLEVIESDVLKVDFAALATRFAAPLRVVGNLPYNISTPILFHL 116

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +         + QKEV +R+ A+  +  Y RLSV+  WR +   +  + P  F P
Sbjct: 117 LG---FAHLIADQHFMLQKEVIDRMVARPATSDYSRLSVMLQWRYRMENVLFVPPESFDP 173

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-IE 256
            P+V S V+  +P   P       L +I Q AF +RRK +R +L +   E+    AG  +
Sbjct: 174 PPRVDSAVVRMVPLAEPPAVDAARLGEIVQVAFSQRRKIMRHTLGKWLDEHGF--AGQFD 231

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE + + ++  +   +
Sbjct: 232 AQRRAEEVPVAEYVALAQAV 251


>gi|262164104|ref|ZP_06031843.1| dimethyladenosine transferase [Vibrio mimicus VM223]
 gi|262027632|gb|EEY46298.1| dimethyladenosine transferase [Vibrio mimicus VM223]
          Length = 232

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 7/235 (2%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G G +T+  +     K  VIE D+     L++   +  ++L I + DA++ DF+
Sbjct: 1   MVEIGPGLGAITEP-VGREVDKFTVIELDRDLAERLRNH-PELASKLTIHEGDAMRFDFK 58

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
           +    ++ +R+  NLPYNI T L+F+           + +  + QKEV  R+ A   S  
Sbjct: 59  QLVKPNNKLRVFGNLPYNISTPLMFHLFEFHR---DIQDMHFMLQKEVVNRLAAGPGSKA 115

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQE 228
           YGRL+V+  +  K   + ++ P  F P PKV S V+  +P+ + P P   LE L ++ +E
Sbjct: 116 YGRLTVMAQYYCKVVPVLEVPPTAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVRE 175

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            F +RRKT+R   K L     L   GI   +R ENL++  F  + N L      A
Sbjct: 176 GFNQRRKTVRNCYKGLVEPETLEALGINPGMRPENLTLAQFVALANWLDAQHQKA 230


>gi|320449691|ref|YP_004201787.1| dimethyladenosine transferase [Thermus scotoductus SA-01]
 gi|320149860|gb|ADW21238.1| dimethyladenosine transferase [Thermus scotoductus SA-01]
          Length = 272

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 144/277 (51%), Gaps = 19/277 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               ++ +L  + +   K +GQNFL+    L++I E++    G  V E+G G G LT+ L
Sbjct: 7   SPKRIRELLKRHGLFADKRLGQNFLVSEVHLRRIVEAAKPFTG-PVYEVGPGLGVLTRAL 65

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              GA +V  IEKD +  P+L++     P  + ++  DAL   +E+   +     ++ANL
Sbjct: 66  AEAGA-QVTAIEKDLRLKPVLEETLKGLP--VRLVFADALAYPWEE---VPENSLLVANL 119

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYNI T L+   +        +  L  L QKEV ER+ A+ N+P YG LS+   +  +A 
Sbjct: 120 PYNIATPLVTRLLRTGR----FARLVFLVQKEVAERMVARPNTPSYGLLSLRVAYHAQAE 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            +FD+ P  FFP PKV S+++   P   P      +L ++ + AF KRRKTL+ +L   G
Sbjct: 176 KLFDLPPGAFFPPPKVVSSLVRLTPRKVP---DDPALFQLLEAAFSKRRKTLKNALTAAG 232

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 E  L   G+  ++RAE L +  F R+ ++L 
Sbjct: 233 YPKEEVEEALRSLGLPPDIRAEALDLSHFQRLKDLLY 269


>gi|319441627|ref|ZP_07990783.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Corynebacterium variabile DSM 44702]
          Length = 318

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 28/290 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ + +   I P K MGQNF++D N +++I  ++       VIE+G G G+LT  LL  
Sbjct: 16  EIRALAAELDITPTKKMGQNFVIDPNTVRRIVSAAELSTDDHVIEVGPGLGSLTLALLEQ 75

Query: 69  --GARKVIVIEKDQQFFPILK----DISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIR 120
             G   V  +E D++    L     + +    + + +I  DAL +         + +P  
Sbjct: 76  VGGTGGVTAVELDKRLAARLPRTIVEFAPARADDVTVIDHDALTLTAADLAEAGVPAPTA 135

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+   +L + +      P    + ++ Q EV +R+ A   S  YG  SV  G+
Sbjct: 136 LVANLPYNVSVPVLLHLLQE---FPSIRRVLVMVQLEVADRLAASPGSKIYGVPSVKAGF 192

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPH------------LNPIPCCLESLKKITQE 228
               +    I  +VF+P+PK+ S ++                  +      + +  +T  
Sbjct: 193 YGAVSKAGTIGKNVFWPAPKIDSGLVRIDRWTDSDRPWQDALTSHDPETLRKEVFAVTDA 252

Query: 229 AFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           AF +RRKTLR +L    G     E +L  AGI+   R E L    F  + 
Sbjct: 253 AFLQRRKTLRAALSGHFGSGADAEAVLTAAGIDPKERGEKLDTGSFVDLA 302


>gi|145222523|ref|YP_001133201.1| dimethyladenosine transferase [Mycobacterium gilvum PYR-GCK]
 gi|315442971|ref|YP_004075850.1| dimethyladenosine transferase [Mycobacterium sp. Spyr1]
 gi|226732599|sp|A4T6P3|RSMA_MYCGI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|145215009|gb|ABP44413.1| dimethyladenosine transferase [Mycobacterium gilvum PYR-GCK]
 gi|315261274|gb|ADT98015.1| dimethyladenosine transferase [Mycobacterium sp. Spyr1]
          Length = 314

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 129/286 (45%), Gaps = 20/286 (6%)

Query: 1   MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           MT+     + ++ +       P+K  GQNF+ D N +++I  +S       V+E+G G G
Sbjct: 1   MTIRLLGRTEIRHLAKSIDFRPRKSFGQNFVHDANTVRRIVSASSVNRSDHVLEVGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNI 115
           +LT  LL  GAR V  +E D      L    + H     NRL ++  D L         +
Sbjct: 61  SLTLALLDRGAR-VTAVEIDPVLATQLPTTIAAHSHSEVNRLTVLNRDILTFKQSDMTEM 119

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
             P  ++ANLPYN+    L + ++     P   ++ ++ Q EV ER+ A+     YG  S
Sbjct: 120 --PTALVANLPYNVAVPALLHLLAE---FPSIRTVMVMVQAEVAERLAAEPGGKDYGVPS 174

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCC---LESLKKITQEAFG 231
               +         +SP VF+P P+V S ++    +   P P      E + ++   AF 
Sbjct: 175 AKVRFFGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDTEFQEQVFELIDIAFA 234

Query: 232 KRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
           +RRKT R +     G      + L  A I+ + R E LSI DF R+
Sbjct: 235 QRRKTSRNAFAEWAGSGNESASRLLAASIDPSRRGETLSINDFVRL 280


>gi|119485101|ref|ZP_01619486.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106]
 gi|119457329|gb|EAW38454.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106]
          Length = 273

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/267 (30%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K   Q++L     L +I  ++       ++EIG G G LT+ LLTL A+ V+ +E D+
Sbjct: 4   PRKQFAQHWLRSPTALNQIVNAAQLSTDDHLLEIGPGTGVLTERLLTL-AQTVLAVEIDR 62

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLFN 136
                L     +  N L ++Q D L +  E     F N  +P +++AN+PYNI   +L  
Sbjct: 63  DLCKKLVPKFGKRDNFL-LLQGDILTLRLEDYLQDFPNFQNPNKVVANIPYNITGPILEK 121

Query: 137 WIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            +   A   P  ++ + LL QKEV +R+ A   S  +G LSV   +  K   + D+    
Sbjct: 122 LLGNIAQPNPQPYDLMVLLVQKEVAQRLCAGPGSRTFGALSVRVQYLAKCEFICDVPSKA 181

Query: 195 FFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN----L 249
           F+P PKV S V+   P     P    + L+   +  F  +RK LR +L+ +   +    +
Sbjct: 182 FYPPPKVDSAVVRLRPRCIEYPAESPKHLEMAVKLGFASKRKMLRNNLQSVIDRDQLTQI 241

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
           L Q  +    RAE+LS+E +  ++N L
Sbjct: 242 LEQLEVNPQARAEDLSVEQWVSLSNRL 268


>gi|242279077|ref|YP_002991206.1| dimethyladenosine transferase [Desulfovibrio salexigens DSM 2638]
 gi|259494247|sp|C6BSW3|RSMA_DESAD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|242121971|gb|ACS79667.1| dimethyladenosine transferase [Desulfovibrio salexigens DSM 2638]
          Length = 262

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 136/269 (50%), Gaps = 16/269 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
             +   KK +GQNFL D NI +KI +S    +  ++IEIG G G LT+ +L  G   + +
Sbjct: 2   QTRHRAKKSLGQNFLQDANIARKIVDSLKITENDSIIEIGPGQGALTKFILEAGPESLTL 61

Query: 76  IEKDQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           +EKD+   P L+   +++P  R+E+  +DALK D+    +     +I+ NLPYN+ ++++
Sbjct: 62  VEKDRDLAPALE---AEYPEARVEL--EDALKFDWAGL-DPDRNWKIVGNLPYNVASKIM 115

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           ++  +         +   + Q EV +R+T+   S  YG +SV      +   +F + P V
Sbjct: 116 WDIAAQCNA-----TCVFMVQHEVAQRVTSGPGSKKYGAISVWIQSFCRTDYLFKVPPTV 170

Query: 195 FFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL--- 250
           F P PKV S VI F P      P  +E L K+ +  F  RRK L + LK    + ++   
Sbjct: 171 FKPKPKVDSAVIKFFPLPEEEKPSDIEGLAKLVKYCFQYRRKQLGKILKSFISDAVIQWA 230

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
            + G+    R E LS   F  +   + ++
Sbjct: 231 EKEGVSLTDRPEALSPLQFQSLYKSVKND 259


>gi|328954033|ref|YP_004371367.1| Ribosomal RNA small subunit methyltransferase A [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454357|gb|AEB10186.1| Ribosomal RNA small subunit methyltransferase A [Desulfobacca
           acetoxidans DSM 11109]
          Length = 287

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 136/282 (48%), Gaps = 15/282 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S K +   +++ P + +GQ+FLL  +  +++  +        V+EIGAG G LT  L   
Sbjct: 5   SPKVLCRRHRLTPNRSLGQHFLLHPDQARRLVAALELRGQEVVVEIGAGLGALTYFLAES 64

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPY 127
           G R VI +E D++  PIL        + + ++  DALK D+          + +  NLPY
Sbjct: 65  GGR-VIALELDRRLIPILTTEVLPGFSNVMVVSQDALKFDYLALSREEGQSLTVAGNLPY 123

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + LLF  +   T       +  + Q+EVG R+ AQ     YG LSVL  +      +
Sbjct: 124 QITSPLLFKLMGVKTA---IRIMLFMVQQEVGLRLMAQPGGKDYGILSVLIQYHFHLRRL 180

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSL----- 241
           F + P  F+P+PKV S V+ F P    P     + L ++ + AF  RRKTLR +L     
Sbjct: 181 FLLKPSNFYPAPKVDSVVLGFRPRLPEPSAINEDFLAQVVKAAFSTRRKTLRNTLTAQSS 240

Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                      +LH   I+   RAE LS++DF R++N L + 
Sbjct: 241 LLRASPAVILAILHDLRIDPGRRAETLSVDDFVRLSNRLAEK 282


>gi|309808503|ref|ZP_07702402.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a]
 gi|308168331|gb|EFO70450.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a]
          Length = 295

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%)

Query: 3   MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M+N          + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G
Sbjct: 1   MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107
            G+LT+ LL  GA KV+  E D     IL  ++ +Q  N     R  II  D LK     
Sbjct: 61  IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   +F+++ PI ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   
Sbjct: 120 DIADYFDVNRPIIVVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHK 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226
           S  YG L++           F++    F PSPKV S V+   P  + +    E L  +I 
Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236

Query: 227 QEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           + AF +RRKTL  +LK L  +      LL+   +++N+R E LSI  +  ++  + + +
Sbjct: 237 KLAFSQRRKTLNNNLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295


>gi|241248269|ref|XP_002402915.1| dimethyladenosine transferase, putative [Ixodes scapularis]
 gi|215496424|gb|EEC06064.1| dimethyladenosine transferase, putative [Ixodes scapularis]
          Length = 382

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 141/294 (47%), Gaps = 22/294 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ +L  Y+I   + + QNFL+D  + +++ +++G +    VIE+G GPG LT+ L
Sbjct: 70  PLPTVRDLLRMYRIRAMRQLSQNFLMDPKLTRRLVKAAGKIRDHHVIEVGPGPGCLTRPL 129

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L LGAR+V+VIEKD +F P L+ ++    NRL+II  D      E               
Sbjct: 130 LELGARQVVVIEKDPRFLPSLQLLAEAADNRLKIIMGDVFNYSMEDLIPQELGVPWEGPP 189

Query: 117 SPIRIIANLPYNIGTRLLFNWI--SADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171
            P+ ++ NLP+++ T LL  W+  ++    PF      LTL FQKEV ERI A       
Sbjct: 190 PPVHVVGNLPFSVSTPLLVRWLRMASQRKGPFLHGRVPLTLTFQKEVAERIVAPVMHVQR 249

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+            +S   FFP P V   V+  +P + P I    + ++K+    F
Sbjct: 250 CRLSVMCQAYCSVQHQLTLSGGSFFPKPDVDVGVVRLVPLVEPVIQQPFDLVEKVCNCLF 309

Query: 231 GKRRKTLRQSLKRLGGENLLHQA-------GIETNLRAENLSIEDFCRITNILT 277
             R+K L   LK L     L  A        I+   R   L++E+  RI  +  
Sbjct: 310 NGRQKYLSNGLKNLFPSRHLDLAKDLVKLVEIDPQTRVVQLTVEEVGRICQVYE 363


>gi|15605077|ref|NP_219862.1| dimethyladenosine transferase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789080|ref|YP_328166.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13]
 gi|166154566|ref|YP_001654684.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu]
 gi|166155441|ref|YP_001653696.1| dimethyladenosine transferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335829|ref|ZP_07224073.1| dimethyladenosine transferase [Chlamydia trachomatis L2tet1]
 gi|27151560|sp|O84358|RSMA_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365015|sp|Q3KM04|RSMA_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729770|sp|B0B7S3|RSMA_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729771|sp|B0BBY8|RSMA_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|3328775|gb|AAC67949.1| Dimethyladenosine Transferase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167610|gb|AAX50618.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13]
 gi|165930554|emb|CAP04049.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu]
 gi|165931429|emb|CAP07003.1| dimethyladenosine transferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|296435873|gb|ADH18047.1| dimethyladenosine transferase [Chlamydia trachomatis G/9768]
 gi|296436799|gb|ADH18969.1| dimethyladenosine transferase [Chlamydia trachomatis G/11222]
 gi|296437733|gb|ADH19894.1| dimethyladenosine transferase [Chlamydia trachomatis G/11074]
 gi|297140232|gb|ADH96990.1| dimethyladenosine transferase [Chlamydia trachomatis G/9301]
 gi|297748484|gb|ADI51030.1| Dimethyladenosine transferase [Chlamydia trachomatis D-EC]
 gi|297749364|gb|ADI52042.1| Dimethyladenosine transferase [Chlamydia trachomatis D-LC]
          Length = 277

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 13/280 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L + L       KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++
Sbjct: 4   SSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL+ GA  VI +EKD  F   L    SQ P  +EI       +   +        RI+AN
Sbjct: 64  LLSQGAN-VIALEKDPMFEESL----SQLPMDIEITDACKYPLTSLEDKGWKGKGRIVAN 118

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY+I T LL  +      P  W+++T++ Q EV  RITA+     YG L+V   +    
Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADV 176

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242
              F +SP+ F+P P V S V+H   H         +E    +T+ AFG+RRK L  SLK
Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236

Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L  ++    +L Q G     R E + +E++ +I ++L D
Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|157804052|ref|YP_001492601.1| dimethyladenosine transferase [Rickettsia canadensis str. McKiel]
 gi|166221697|sp|A8EZN3|RSMA_RICCK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157785315|gb|ABV73816.1| dimethyladenosine transferase [Rickettsia canadensis str. McKiel]
          Length = 270

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/269 (36%), Positives = 145/269 (53%), Gaps = 9/269 (3%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + + I P K  GQNF+ D ++  KI   S   +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHAALHHINPLKKHGQNFIFDSSLCHKIVRVSNLEENSRVLEIGPGSGGLTRSILQ 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                + VIE D++F P+L +I   +PN L II+ DALK++          + II+NLPY
Sbjct: 63  KNPESLTVIETDERFIPLLNEIKEYYPN-LNIIKQDALKINLTDL--GYDKVTIISNLPY 119

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +IGT L+  W+          S+TL+ QKE+ ERI A  ++  YGRLSV+     K    
Sbjct: 120 HIGTELVIRWLKEAR---LITSMTLMLQKELVERICAMPSTKAYGRLSVICQLIAKVEKC 176

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           F+++P  F+P PKV S ++   P  N P    +  +++IT+ AF  RRK ++ SLK    
Sbjct: 177 FEVAPTAFYPPPKVYSAIVKLTPLENLPSIALITKVEQITKLAFAGRRKMIKSSLKNFVP 236

Query: 247 --ENLLHQAGIETNLRAENLSIEDFCRIT 273
               +L Q  I  N RAENL+ +D+  I 
Sbjct: 237 VKNEVLTQLNINDNYRAENLTPQDYLMIA 265


>gi|300864419|ref|ZP_07109290.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506]
 gi|300337563|emb|CBN54438.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506]
          Length = 281

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 132/269 (49%), Gaps = 14/269 (5%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L     L +I +++       V+EIG G G LT+ LL   A+ V+ +E D
Sbjct: 5   QPRKRFAQHWLKSEKALNQIVKAADLSQ-DRVLEIGPGTGILTRSLLP-AAQSVVAVEID 62

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLF 135
           +     L     +  N L ++Q D L +D E+    F    +P +++AN+PYNI   ++ 
Sbjct: 63  RDLCEKLAKQLGKVDNFL-LVQGDILAMDLEEQLAAFPKFQNPNKVVANIPYNITGPIIE 121

Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             +   + P    ++ + LL QKEV ER+ A+  S  +G LSV   +  +  ++ D+   
Sbjct: 122 KLLGKISAPAAKPFDLIVLLVQKEVAERLYAKPGSRAFGALSVRVQYLAECELICDVPAK 181

Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----EN 248
            F+P PKV S V+   P  + P       L+ + +  FG +RK LR +LK          
Sbjct: 182 AFYPPPKVDSAVVRLRPRMVEPQAINPVHLESLIKLGFGSKRKMLRNNLKGTIELERLAQ 241

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           LL +  I    RAE+LS+ ++  + N L 
Sbjct: 242 LLEKLQINPQCRAEDLSVAEWVALANNLE 270


>gi|15604515|ref|NP_221033.1| dimethyladenosine transferase [Rickettsia prowazekii str. Madrid E]
 gi|6225594|sp|O05952|RSMA_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|2073482|emb|CAA72482.1| dimethyladenosine transferase [Rickettsia prowazekii]
 gi|3861209|emb|CAA15109.1| DIMETHYLADENOSINE TRANSFERASE (ksgA) [Rickettsia prowazekii]
 gi|292572303|gb|ADE30218.1| Dimethyladenosine transferase [Rickettsia prowazekii Rp22]
          Length = 268

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/269 (37%), Positives = 149/269 (55%), Gaps = 9/269 (3%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + +KI P K  GQNF+ D ++  KI  +S  L+   VIEIG G G LT+ +L 
Sbjct: 3   PSIVKHATSHKINPLKKHGQNFIFDSSLCDKIIRASNVLENSNVIEIGPGIGGLTRSILQ 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              + + VIE D++  P+L +I   +PN L II+ D LK++      I   + +I+NLPY
Sbjct: 63  KNPKSLTVIEIDERCIPLLNEIQEYYPN-LNIIKQDVLKINLTDL--IYDKVTVISNLPY 119

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +IGT L+   +          ++TL+ QKEV ERI A  ++  YGRLSV+     K    
Sbjct: 120 HIGTELVIRLLKE---VKLITNMTLMLQKEVVERICAIPSTKAYGRLSVICQILAKVEKC 176

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246
           F+++P  F+P PKV S ++  IP  NP    L   +++IT+  F  RRK ++ SL+ L  
Sbjct: 177 FNVAPTAFYPHPKVYSAIVKIIPLENPPSIALINKVEQITKLVFAGRRKMIKSSLRNLIP 236

Query: 247 E--NLLHQAGIETNLRAENLSIEDFCRIT 273
               +L Q  I  N RAENL+ +D+ RI 
Sbjct: 237 NIHEVLTQLKINCNDRAENLTPKDYLRIA 265


>gi|269796309|ref|YP_003315764.1| dimethyladenosine transferase [Sanguibacter keddieii DSM 10542]
 gi|269098494|gb|ACZ22930.1| dimethyladenosine transferase [Sanguibacter keddieii DSM 10542]
          Length = 320

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 136/295 (46%), Gaps = 23/295 (7%)

Query: 1   MTMNNKSH------SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEI 54
           M MN+ S+       ++ +     + P K +GQNF+ D   ++KI  S+G   G  V+E+
Sbjct: 1   MLMNDTSNALLGPVQIRDLAGRLGVRPTKTLGQNFVHDAGTVRKIVRSAGIEAGQHVVEV 60

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE 110
           G G G+LT  LL  G   V+ +E D      L     D + +  +RL ++  DAL V   
Sbjct: 61  GPGLGSLTFGLLEAGV-TVVAVEIDPVLAAQLPLTVADRAPEWSDRLTVVLQDALTVTE- 118

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
                 +P  ++ANLPYN+   +L  ++         + + ++ Q EV +R+ A   +  
Sbjct: 119 --LPGPAPTALVANLPYNVAVPVLLTFLER---FDSLDRVLVMVQAEVADRLAAPPGNRT 173

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEA 229
           YG  SV   W   A     I  +VF+P P V S ++      +P+     E + ++   A
Sbjct: 174 YGIPSVKAAWYASARRTSTIGRNVFWPVPNVDSALVLLERRDHPVTRATRERVFEVVDAA 233

Query: 230 FGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           F +RRK LR      +      +  L  AG++   R E L+++DF RI   L D 
Sbjct: 234 FAQRRKMLRGALAELAGSAAAAQQALEAAGVDPTTRGEQLTVDDFARIAEALDDQ 288


>gi|259500886|ref|ZP_05743788.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335]
 gi|302190661|ref|ZP_07266915.1| dimethyladenosine transferase [Lactobacillus iners AB-1]
 gi|309809117|ref|ZP_07702990.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D]
 gi|259167580|gb|EEW52075.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335]
 gi|308170562|gb|EFO72582.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D]
          Length = 295

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%)

Query: 3   MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M+N          + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G
Sbjct: 1   MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107
            G+LT+ LL  GA KV+  E D     IL  ++ +Q  N     R  II  D LK     
Sbjct: 61  IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   +F+++ PI ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   
Sbjct: 120 DIADYFDVNQPIIVVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHK 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226
           S  YG L++           F++    F PSPKV S V+   P  + +    E L  +I 
Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236

Query: 227 QEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           + AF +RRKTL  +LK L  +      LL+   +++N+R E LSI  +  ++  + + +
Sbjct: 237 KLAFSQRRKTLNNNLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295


>gi|329942659|ref|ZP_08291438.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10]
 gi|332287254|ref|YP_004422155.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
 gi|254574590|gb|ACT68006.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
 gi|313847840|emb|CBY16834.1| dimethyladenosine transferase [Chlamydophila psittaci RD1]
 gi|325506928|gb|ADZ18566.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
 gi|328814919|gb|EGF84908.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10]
 gi|328914500|gb|AEB55333.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
          Length = 278

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 141/285 (49%), Gaps = 18/285 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+ ++     + +   +   PKK + QNFL+D NIL+KI   S    G  V+EIG G G 
Sbjct: 1   MSRSSPEQLTRFLAEVHGH-PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SP 118
           LT++L+  GA  V+ +EKD  F   LK +    P  LEI   DA K    +  +      
Sbjct: 60  LTEVLVNQGAH-VVALEKDPMFEETLKQL----PIHLEIT--DACKYPLSQLQDKGWQGK 112

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
            R++ANLPY++ T LL         P  W+++T++ Q EV  RI AQ     YG L++  
Sbjct: 113 GRVVANLPYHVTTPLLTKLFLE--VPNQWKTVTVMIQDEVARRIKAQPGGKEYGSLTIFL 170

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKT 236
            +       F +SP  F P P+V+S V+H       P+   L      +T+ AFG+RRK 
Sbjct: 171 QFFVDVRYAFKVSPGCFLPKPQVSSAVVHMTVKDRFPLEEPLRTKFFSLTRAAFGQRRKL 230

Query: 237 LRQSLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L  +LK L  +      L Q       R E LS++D+ ++  +L+
Sbjct: 231 LANALKDLYPKERVFEALSQLNFSDKTRPETLSLDDYLKLFELLS 275


>gi|225848984|ref|YP_002729148.1| dimethyladenosine transferase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643260|gb|ACN98310.1| dimethyladenosine transferase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 266

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 133/262 (50%), Gaps = 9/262 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK  GQ+FL   +++KKI +     +  T++EIG G G LT+ +L     K+  +E
Sbjct: 3   KVKAKKQFGQHFLKSQDVVKKIVDEVDIKEDDTILEIGPGTGILTEEILKRNPNKLYSVE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+  +P+L++   ++ N  E+++ D   V+ ++    S  ++++ NLPYN+ + ++ N 
Sbjct: 63  IDKSLYPLLEEKFKEYKN-FELVKSDIFDVNIKEIA-ASKKLKVVGNLPYNVASLIMINC 120

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +       F      + QKEV E++ A+  +  Y  LSV          +  +    F P
Sbjct: 121 VFNMEVVDF---CVFMIQKEVAEKLIAKPKTKSYTFLSVFMQTFFDIKYIMSVPARFFSP 177

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            PKVTS V+   P+       ++  K      F  RRK +R  L     +++L +A I+ 
Sbjct: 178 PPKVTSAVVKLTPYNRFGIKDIKKYKNFVSHLFTDRRKMIRSKL----DQSILEKANIKP 233

Query: 258 NLRAENLSIEDFCRITNILTDN 279
            LRAE L++EDF R+  ++ ++
Sbjct: 234 TLRAEELNVEDFVRLFEVVKND 255


>gi|332531189|ref|ZP_08407102.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Hylemonella gracilis ATCC 19624]
 gi|332039296|gb|EGI75709.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Hylemonella gracilis ATCC 19624]
          Length = 254

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 133/257 (51%), Gaps = 19/257 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQ+FL D  I+  I  + G   G  V+EIG G   +TQ L+    R + VIE
Sbjct: 2   KHIPRKRFGQHFLADDGIIDAIVRAIGPQPGQCVVEIGPGLAAMTQPLVERLGR-MTVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFN 136
            D+     L+     HP +LE+I+ D LKVDF     +    +R++ NLPYNI T +LF+
Sbjct: 61  LDRDLAARLRK----HP-QLEVIESDVLKVDFSALAALARQKLRVVGNLPYNISTPILFH 115

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +         E    + QKEV +R+ AQ ++  Y RLSV+  WR +   +  + P  F 
Sbjct: 116 LLEHVEA---VEDQHFMLQKEVVDRMVAQPSTADYSRLSVMLQWRYEMEDVLFVPPESFD 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI- 255
           P P+V S V+  +P   P+      L+++ Q AF +RRK LR +L R      L + G+ 
Sbjct: 173 PPPRVDSAVVRMVPRSAPVALNARLLEEMVQVAFSQRRKLLRHTLGRW-----LEEKGVA 227

Query: 256 ---ETNLRAENLSIEDF 269
              +   RAE + + ++
Sbjct: 228 DPFDLQRRAEEVPVSEY 244


>gi|221069848|ref|ZP_03545953.1| dimethyladenosine transferase [Comamonas testosteroni KF-1]
 gi|220714871|gb|EED70239.1| dimethyladenosine transferase [Comamonas testosteroni KF-1]
          Length = 253

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 12/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D  I+  I ++     G  ++EIG G   L+Q L+     K+ VIE
Sbjct: 2   KHIPRKRFGQNFLTDGAIIDNIVQAIDPKAGEPMVEIGPGLMALSQPLVERLG-KLTVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135
            D+     L+       + L++++ D LKVDF         + +R++ NLPYNI + +LF
Sbjct: 61  LDRDLAARLRLR-----DDLDVVESDVLKVDFRALAARLGVAKLRVVGNLPYNISSPILF 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +         +    + QKEV +R+ A   +  YGRLSV+  WR     +  + P  F
Sbjct: 116 HLLEQVD---VVQDQHFMLQKEVIDRMVADAGTSAYGRLSVMLQWRYAMEDVLFVPPGSF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P PKV S V+  IP   P     + L+++ Q AF +RRK LR +L +            
Sbjct: 173 NPPPKVDSAVVRMIPREQPADLDPKLLEEMVQVAFSQRRKILRNTLGKWLEAKGFTG-EF 231

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +   RAE + + +F  +   L+
Sbjct: 232 DLQRRAEEVPVGEFEALAAQLS 253


>gi|120405750|ref|YP_955579.1| dimethyladenosine transferase [Mycobacterium vanbaalenii PYR-1]
 gi|226732602|sp|A1TEH3|RSMA_MYCVP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119958568|gb|ABM15573.1| dimethyladenosine transferase [Mycobacterium vanbaalenii PYR-1]
          Length = 311

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 129/286 (45%), Gaps = 20/286 (6%)

Query: 1   MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           MT+     + ++ +       P+K  GQNF+ D N +++I  +S       V+E+G G G
Sbjct: 1   MTIRLLGRTEIRHLAKSIDFRPRKSFGQNFVHDANTVRRIVSASSINRSDHVLEVGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNI 115
           +LT  LL  GA KV  +E D      L    + H     NRL ++  D L         +
Sbjct: 61  SLTLALLDRGA-KVTAVEIDPVLANQLPTTIAAHSHSEVNRLTVLNRDILTFKQSDMTEM 119

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
             P  ++ANLPYN+    L + ++     P   ++ ++ Q EV ER+ A+     YG  S
Sbjct: 120 --PTALVANLPYNVAVPALLHLLAE---FPSIRTVMVMVQAEVAERLAAEPGGKDYGVPS 174

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE---SLKKITQEAFG 231
               +         +SP VF+P P+V S ++    +   P P   E    + ++   AF 
Sbjct: 175 AKVRFFGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDPEFRQQVFELIDVAFA 234

Query: 232 KRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
           +RRKT R +     G      + L  A I+ + R E LSI DF R+
Sbjct: 235 QRRKTSRNAFAEWAGSGNESASRLLAASIDPSRRGETLSINDFVRL 280


>gi|242023243|ref|XP_002432045.1| Dimethyladenosine transferase, putative [Pediculus humanus
           corporis]
 gi|212517403|gb|EEB19307.1| Dimethyladenosine transferase, putative [Pediculus humanus
           corporis]
          Length = 350

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 150/297 (50%), Gaps = 24/297 (8%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M++  +   +++ +L  Y++   K + QNFLL+L I  +I +++G +    V E+G GPG
Sbjct: 1   MSVTISPLPTIRELLKLYQVHALKRLSQNFLLNLRITDRIVKAAGKIKDGEVCEVGPGPG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--- 116
            +T+ +L    +KV+VIEKDQ+F P+L+++ +      +II  D +  D  K F+ S   
Sbjct: 61  AITRSILMRNPQKVVVIEKDQRFEPMLENLETSSYCDFKIIYADIMDYDLSKLFDESLKK 120

Query: 117 ------SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQ 165
                   I +I NLP+N+ T L+  W++      + W      +TL FQ+EV ERI   
Sbjct: 121 NWNDVTPNIHLIGNLPFNVSTPLIVRWLNDISLRRNAWSLGRVKMTLTFQEEVAERIIGI 180

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKK 224
             S +  RLSV+        + F I    F P PKV   V+HF P + P      E ++K
Sbjct: 181 PGSKNRCRLSVMCQNWCDVHLKFKIPGTAFLPKPKVDVGVVHFEPLIEPFIKMDFEIVEK 240

Query: 225 ITQEAFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRIT 273
           + +  F  R+K   +++  L  +         L  ++ +   LR+  ++++D+ R+ 
Sbjct: 241 VLRIMFNYRQKYCNRAVANLFPKELSDKLSVELFQRSELNPKLRSYQMTMDDWNRLC 297


>gi|225012229|ref|ZP_03702666.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-2A]
 gi|225003784|gb|EEG41757.1| dimethyladenosine transferase [Flavobacteria bacterium MS024-2A]
          Length = 261

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/259 (37%), Positives = 140/259 (54%), Gaps = 9/259 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK +GQ+FL DL+I +KIA++        V+EIG G G LTQ L+    + + +IE 
Sbjct: 4   VRAKKKLGQHFLNDLSIAQKIADTLVFDHYKKVLEIGPGMGVLTQFLVP-KTKNLHLIEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L++  S+   +  I + D LK+  +K F    P  II N PYNI T+++F  +
Sbjct: 63  DSESVNYLRNNYSEIDTK--ITEGDFLKIKLKKIFGDH-PFAIIGNFPYNISTQIVFKTL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 PF+     +FQKEV ERI     S  YG LSVL       T +F + PHVF P 
Sbjct: 120 EYREQIPFF---VGMFQKEVAERICEPPGSKKYGILSVLAQIFYNTTYLFSVPPHVFSPP 176

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S V+  +   +  + C    L KI + +F +RRKTLR SLK L   ++L +  I  
Sbjct: 177 PKVDSAVMQMVRKEDFNLDCDEGLLFKIVKLSFQQRRKTLRNSLKTLNLPDILREDTI-F 235

Query: 258 NLRAENLSIEDFCRITNIL 276
           +LR E LS +DF ++T  +
Sbjct: 236 DLRPEKLSGDDFIQLTKRI 254


>gi|330444319|ref|YP_004377305.1| dimethyladenosine transferase [Chlamydophila pecorum E58]
 gi|328807429|gb|AEB41602.1| dimethyladenosine transferase [Chlamydophila pecorum E58]
          Length = 280

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/286 (34%), Positives = 145/286 (50%), Gaps = 17/286 (5%)

Query: 1   MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M ++  S   L   L+  +  PKK + QNFL+D NI++KI   S   +G  V+EIG G G
Sbjct: 1   MVLSRSSPERLTRFLAEIRESPKKGLSQNFLIDGNIIRKILSESQVQEGEWVLEIGPGFG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF--FNISS 117
            LT+ L++ GA  VI +EKD +F   L ++   H   LEI   DA     +K        
Sbjct: 61  ALTEGLVSSGAH-VIALEKDPKFATTLSELPLSH---LEIT--DARTYPLQKLSELGWEG 114

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             R+IANLPY+I T LL    S    P  W+S+T++ Q EV  RI AQ  +  YG L++ 
Sbjct: 115 KGRMIANLPYHITTPLLIKIFSEA--PHMWKSVTVMVQDEVARRIIAQPGNKDYGSLTIF 172

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRK 235
             +       F +    F+P P+V S V+H     + P+P    +    +T+ AF +RRK
Sbjct: 173 LQFFAHVRYAFKVRASCFYPQPQVHSAVVHMEVKEHFPLPETVFKDFFTLTRTAFQQRRK 232

Query: 236 TLRQSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILT 277
            L  +LK L  + L    L Q  I    R E LS+ED+  +  +L+
Sbjct: 233 YLTNTLKDLFPKELLLSALQQLRISDKARPETLSLEDYLALFKLLS 278


>gi|317124052|ref|YP_004098164.1| dimethyladenosine transferase [Intrasporangium calvum DSM 43043]
 gi|315588140|gb|ADU47437.1| dimethyladenosine transferase [Intrasporangium calvum DSM 43043]
          Length = 323

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 17/285 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K  GQNF++D N ++KI   +G      V+E+G G G+LT  LL
Sbjct: 29  PTQIRELAERLDVRPTKQWGQNFVVDANTVRKIVRVAGVGPEDVVVEVGPGLGSLTLALL 88

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            +  R+V  IE D +    L    + +  ++  +L ++  DAL V          P  ++
Sbjct: 89  PV-VRQVTAIEVDPRLAGALEGTVRSLQPENAAKLRLVAADALTVTR---LPGPKPTALV 144

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYNI   ++ +++           + ++ Q EV ER+ A+     YG  S+   W  
Sbjct: 145 ANLPYNISVPVVLSFLEQFA---SIRRVLVMVQLEVAERLAAKPGGKIYGVPSLKAAWYA 201

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241
              +   +  +VF+P+P V S ++  +    P      + + +    AF +RRK+LR +L
Sbjct: 202 DVELAGRVGRNVFWPAPNVDSGLVSLVRRDPPDTTATRQEVFRCIDAAFLQRRKSLRGAL 261

Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
               G        L  AG++   R E L I  F RI      + D
Sbjct: 262 ASWAGSPARAEAALLAAGVDPKARGEQLDIVAFARIAEHKDAHDD 306


>gi|167751829|ref|ZP_02423956.1| hypothetical protein ALIPUT_00071 [Alistipes putredinis DSM 17216]
 gi|167660070|gb|EDS04200.1| hypothetical protein ALIPUT_00071 [Alistipes putredinis DSM 17216]
          Length = 349

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/268 (31%), Positives = 128/268 (47%), Gaps = 18/268 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           +  KK +GQ+FL+DLNI +KI +S G   S     V+E+G G G LT+ LL         
Sbjct: 88  VRAKKALGQHFLVDLNIARKICDSLGGGTSEKPCPVLEVGCGMGVLTRFLLKRTDVVTYG 147

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            E D +    L     +   RL  ++ D LK+D    F     +R+I N PYNI +++ F
Sbjct: 148 AEIDSESVAYLHAHYPEFTPRL--MEGDFLKMDLRTLFPEG--LRVIGNFPYNISSQIFF 203

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      P       + QKEV  R+     S  YG LSVL         +F ++  VF
Sbjct: 204 KVLENRDLIP---ECVGMIQKEVAVRLAEPPGSKEYGILSVLLQAWYDIEYLFTVNETVF 260

Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            P PKV S V+    + ++ + C      ++ + +FG+RRK LR SL+   G+      G
Sbjct: 261 NPPPKVKSAVVRLHRNGVDRLDCDERLFVRVVKASFGQRRKMLRNSLRAAFGD----FGG 316

Query: 255 IE---TNLRAENLSIEDFCRITNILTDN 279
           +E      RAE LS+ DF  +T  + ++
Sbjct: 317 VEHPFFTQRAEQLSVADFVELTRWVEEH 344


>gi|147904625|ref|NP_001079850.1| dimethyladenosine transferase 1, mitochondrial [Xenopus laevis]
 gi|82188081|sp|Q7T0W5|TFB1M_XENLA RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|33417098|gb|AAH56010.1| MGC68924 protein [Xenopus laevis]
          Length = 344

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++  I+  + +  +K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIGEIVKLFNLRAEKQLSQNFLLDLKLTDKIVRRAGNLQNAYVCEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  G  +++V+EKD +F P LK ++     ++  +  D L    ++ F         +  
Sbjct: 74  LNAGVEELLVVEKDTRFIPGLKMLNEASGGKVRTVHGDILTYRMDRAFPKHLIKSWDDEP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWES---LTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   AD   PF      +TL FQ+EV ER+TA   +   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLEQVADRTGPFTYGRTQMTLTFQQEVAERLTASTKNKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS+++ +       F I    F P PKV   V+H  P + P I    + ++K+ +  F
Sbjct: 194 SRLSIMSQYLCNVKNCFTIPGRAFIPKPKVDVGVVHLTPFVQPKIEQPFKLVEKVVRCIF 253

Query: 231 GKRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK     +  L  E +        L  A ++  LR   L++  F ++ N+  +  D
Sbjct: 254 QFRRKYCHHGVSILFPEEIRIQLTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCD 312


>gi|242060710|ref|XP_002451644.1| hypothetical protein SORBIDRAFT_04g005150 [Sorghum bicolor]
 gi|241931475|gb|EES04620.1| hypothetical protein SORBIDRAFT_04g005150 [Sorghum bicolor]
          Length = 359

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 122/273 (44%), Gaps = 22/273 (8%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I  +K  GQ+ L +  ++  I   +G     TV+EIG G GNLT+ LL  G + V+ +E
Sbjct: 27  GIPFEKSKGQHILKNPALVDSIVAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVE 86

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L      HP  +RL++IQ D LK D   F         +AN+PY I + L F
Sbjct: 87  LDPRMVLELNRRFQGHPLSSRLKVIQGDVLKCDLPYF------DICVANIPYQISSPLTF 140

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +S     P +    ++FQ+E   R+ AQ     Y RLSV     ++ + +  +  + F
Sbjct: 141 KLLSHR---PIFRCAVIMFQREFAMRLVAQPGDTLYCRLSVNVQLLSRVSHLLKVGKNNF 197

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---- 251
            P PKV S+V+   P     P   +    + +  F ++ +TL    K      LL     
Sbjct: 198 RPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRICFNRKNRTLGSLFKTKRVLELLEKNYK 257

Query: 252 -----QAGIETNLRAEN-LSIEDFCRITNILTD 278
                Q   + ++  E  +S +D   + N++ D
Sbjct: 258 TMQSLQLTRDADM-GEQKMSADDVALLANMVED 289


>gi|255506936|ref|ZP_05382575.1| dimethyladenosine transferase [Chlamydia trachomatis D(s)2923]
 gi|289525395|emb|CBJ14872.1| dimethyladenosine transferase [Chlamydia trachomatis Sweden2]
 gi|296434947|gb|ADH17125.1| dimethyladenosine transferase [Chlamydia trachomatis E/150]
 gi|296438667|gb|ADH20820.1| dimethyladenosine transferase [Chlamydia trachomatis E/11023]
          Length = 277

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 13/280 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L + L       KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++
Sbjct: 4   SSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL+ GA  VI +EKD  F   L    SQ P  +EI       +   +        RI+AN
Sbjct: 64  LLSQGAN-VIALEKDPMFEESL----SQLPMDIEITDACEYPLTSLEDKGWKGKGRIVAN 118

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY+I T LL  +      P  W+++T++ Q EV  RITA+     YG L+V   +    
Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADV 176

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242
              F +SP+ F+P P V S V+H   H         +E    +T+ AFG+RRK L  SLK
Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236

Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L  ++    +L Q G     R E + +E++ +I ++L D
Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|58617138|ref|YP_196337.1| dimethyladenosine transferase [Ehrlichia ruminantium str. Gardel]
 gi|93141341|sp|Q5FH30|RSMA_EHRRG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|58416750|emb|CAI27863.1| Dimethyladenosine transferase [Ehrlichia ruminantium str. Gardel]
          Length = 262

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/263 (39%), Positives = 147/263 (55%), Gaps = 8/263 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y I PKK + Q F+   +I  KI   +G++   ++IEIG G G +T  +L    +K+I I
Sbjct: 5   YMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLISI 64

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           EKD +  PI   I  +   + E I  DAL +D         P+++IANLPY+I T LL  
Sbjct: 65  EKDSRLLPIHDKIIKEFQGKYEFILSDALDIDLRNIA--KPPVKVIANLPYSIATLLLIK 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           WI    +  F+ S TL+FQKEV +RI AQ N+ +YG LS+LT        M D  P +F 
Sbjct: 123 WI---NYINFFHSFTLMFQKEVADRIIAQPNNKNYGTLSILTQLFADVYKMQDFGPEIFS 179

Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQA 253
           P PKV S+VI+ +    P      + L+KI +  F +RRK +R +LK++    + +LH  
Sbjct: 180 PKPKVFSSVINIVVLPQPRFDVNYDKLRKIVKITFNQRRKMIRSTLKQITNNTDEILHSL 239

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
            I  NLR ENLSI+ FC I N +
Sbjct: 240 NIPNNLRPENLSIKQFCDIANCI 262


>gi|237802779|ref|YP_002887973.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274013|emb|CAX10806.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT]
          Length = 277

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 13/280 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L + L       KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++
Sbjct: 4   SSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL+ GA  VI +EKD  F   L    SQ P  +EI       +   +        RI+AN
Sbjct: 64  LLSQGAN-VIALEKDPMFEESL----SQLPMDIEITDACKYPLTSLEDKGWKGKGRIVAN 118

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY+I T LL  +      P  W+++T++ Q EV  RITA+     YG L+V        
Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSLFADV 176

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242
              F +SP+ F+P P V S V+H   H         +E    +T+ AFG+RRK L  SLK
Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236

Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L  ++    +L Q G     R E + +E++ +I ++L D
Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|281412793|ref|YP_003346872.1| dimethyladenosine transferase [Thermotoga naphthophila RKU-10]
 gi|281373896|gb|ADA67458.1| dimethyladenosine transferase [Thermotoga naphthophila RKU-10]
          Length = 260

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 135/261 (51%), Gaps = 18/261 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  Y +  KK++GQ FL D  I K+I +++       V+EIGAG G LT+ L   GAR V
Sbjct: 7   LKKYGVRLKKHLGQVFLSDDRIAKRIVKAADLTPEDVVVEIGAGAGTLTEELAKTGAR-V 65

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           I  E D+   PIL++  S++PN +E+  +D LK       ++      ++N+PY+I   L
Sbjct: 66  IAYEIDESLAPILRERLSKYPN-VELRFEDFLK-----AKDVPEGAICVSNIPYSITGLL 119

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +   I        ++   ++ QKEVGERI A+     YG LSV+     +   +FD+S  
Sbjct: 120 MEKIIEWK-----FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P+P+V STV+       P+    E  KK     F K+RKTL+ +LK      +    
Sbjct: 175 CFVPNPEVDSTVVDL--KRKPVDLDFEKFKKFVSMIFAKKRKTLKNNLKPFLS--IFE-- 228

Query: 254 GIETNLRAENLSIEDFCRITN 274
           G++ + RAE L++E+   +  
Sbjct: 229 GVDLSRRAEQLTVEEIVELYE 249


>gi|147669028|ref|YP_001213846.1| dimethyladenosine transferase [Dehalococcoides sp. BAV1]
 gi|189028805|sp|A5FS52|RSMA_DEHSB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|146269976|gb|ABQ16968.1| dimethyladenosine transferase [Dehalococcoides sp. BAV1]
          Length = 291

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 139/271 (51%), Gaps = 15/271 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y +  +K +GQ+FL+   +L KI  ++      TVIE+G G G LT+ LL   A
Sbjct: 20  KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGVLTEELLKR-A 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +VI +E D +    L +    +PN   +I  D LK   E+    + P +++ANLPY I 
Sbjct: 79  GQVIAVEVDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQNVPYKLVANLPYYIT 137

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +L  ++ A   P   ES+ ++ QKEV + I A+      G L++   +    +++  +
Sbjct: 138 SAVLRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTGDM--GLLTLSIRFYGNPSLVSVV 192

Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246
               F+P P+V S ++   IP    +    E    K+ +  FG RRKTL  +L +  G  
Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRIT 273
                +LL+ AGI+   RAE LS+E++ ++ 
Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKLC 283


>gi|15892945|ref|NP_360659.1| dimethyladenosine transferase [Rickettsia conorii str. Malish 7]
 gi|15620139|gb|AAL03560.1| dimethyladenosine transferase [Rickettsia conorii str. Malish 7]
          Length = 315

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/303 (34%), Positives = 152/303 (50%), Gaps = 38/303 (12%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 17  PSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 76

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113
                + VIE D +  P+L +I   +PN L II+ DALK++                   
Sbjct: 77  KNPESLTVIETDARCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKKR 135

Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                            +I   + II+NLPY+IGT L+  W+          S+TL+ QK
Sbjct: 136 EVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 192

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           EV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP  
Sbjct: 193 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPPS 252

Query: 217 CCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273
             L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI 
Sbjct: 253 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIYEVLTQLKINDNYRAENLAPQDYLRIA 312

Query: 274 NIL 276
            IL
Sbjct: 313 EIL 315


>gi|237804701|ref|YP_002888855.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273001|emb|CAX09913.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 277

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 13/280 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L + L       KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++
Sbjct: 4   SSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL+ GA  VI +EKD  F   L    SQ P  +EI       +   +        RI+AN
Sbjct: 64  LLSQGAN-VIALEKDPMFEESL----SQLPMDIEITDACKYPLTSLEDKGWKGKGRIVAN 118

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY+I T LL  +      P  W+++T++ Q EV  RITA+     Y  L+V   +    
Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYSSLTVFLSFFADV 176

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242
              F +SP+ F+P P V S V+H   H         +E    +T+ AFG+RRK L  SLK
Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236

Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L  ++    +L Q G     R E + +E++ +I ++L D
Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|15835248|ref|NP_297007.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
 gi|270285420|ref|ZP_06194814.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
 gi|270289434|ref|ZP_06195736.1| dimethyladenosine transferase [Chlamydia muridarum Weiss]
 gi|301336817|ref|ZP_07225019.1| dimethyladenosine transferase [Chlamydia muridarum MopnTet14]
 gi|27151610|sp|Q9PK40|RSMA_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|7190672|gb|AAF39462.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
          Length = 277

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 141/282 (50%), Gaps = 17/282 (6%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L + L       KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++
Sbjct: 4   SSIEQLTSFLKSVNGRAKKALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFGALSEV 63

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRII 122
           L++ GA  VI +EKD  F   L    SQ P  +EI   DA K       +       RI+
Sbjct: 64  LVSQGAN-VIALEKDPMFEESL----SQLPIDIEIT--DACKYPLASLDDKGWKGKGRIV 116

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY+I T LL  +      P  W+++T++ Q EV  RITA      Y  L+V   +  
Sbjct: 117 ANLPYHITTPLLTKFFLE--CPNRWKTVTVMIQDEVARRITANPGDKDYSSLTVFLRFFA 174

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQS 240
                F +SP+ F+P P V+S V+H   H         ++    +T+ AFG+RRK L  S
Sbjct: 175 DVQYAFKVSPNCFYPKPSVSSAVVHMRVHEDFPLSGSEIDEFFALTRAAFGQRRKLLANS 234

Query: 241 LKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LK L  ++    +L   G     R E +S+E++ +I  +L D
Sbjct: 235 LKNLYPKDKVFQVLEHLGFSEKTRPETISLEEYLKIFRLLKD 276


>gi|160901464|ref|YP_001567046.1| dimethyladenosine transferase [Delftia acidovorans SPH-1]
 gi|160367048|gb|ABX38661.1| dimethyladenosine transferase [Delftia acidovorans SPH-1]
          Length = 268

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 126/258 (48%), Gaps = 12/258 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQNFL D  I+  I  +     G +++EIG G   LTQ L+    R + VIE
Sbjct: 15  KHIPRKRFGQNFLTDDGIIDGIVSAIDPRPGQSMVEIGPGLMALTQPLVERLGR-LTVIE 73

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135
            D+     L+        +L++++ D LKVDF           +RI  NLPYNI + +LF
Sbjct: 74  LDRDLAVRLR-----LHEQLDVVESDVLKVDFRAIAARLGVPKLRIAGNLPYNISSPILF 128

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +         E    + QKEV +R+ A  ++  YGRL+V+  WR     +  + P  F
Sbjct: 129 HLLEQ---VDVVEDQHFMLQKEVIDRMVASPSTAAYGRLTVMLQWRYAMESVLYVPPESF 185

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P PKV S V+  +P  +P     + L+++ Q AF +RRK LR +L R            
Sbjct: 186 NPPPKVDSAVVRMVPRESPAALDAKLLEEMVQVAFSQRRKILRNTLGRWLEAKGFDG-EF 244

Query: 256 ETNLRAENLSIEDFCRIT 273
           +   RAE + + ++  + 
Sbjct: 245 DLQRRAEEVPVSEYEALA 262


>gi|312874729|ref|ZP_07734748.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b]
 gi|311089474|gb|EFQ47899.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b]
          Length = 295

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 25/299 (8%)

Query: 3   MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M+N          + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++G  VIEIG G
Sbjct: 1   MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107
            G+LT+ LL  GA KV+  E D     IL  ++ +Q  N     R  II  D LK     
Sbjct: 61  IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   +F+++ PI ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   
Sbjct: 120 DIADYFDVNRPIIVVANLPYYITTPIILKLMHS---PVKISQLTLMMQKEVAERISAAHK 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226
           S  YG L++           F++    F PSPKV S V+   P  + +    E L  +I 
Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236

Query: 227 QEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           + AF +RRKTL  +LK L  +      LL+   +++N+R E LSI  +  ++  + + +
Sbjct: 237 KLAFSQRRKTLNNNLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295


>gi|62184932|ref|YP_219717.1| dimethyladenosine transferase [Chlamydophila abortus S26/3]
 gi|81312896|sp|Q5L6H5|RSMA_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62147999|emb|CAH63750.1| dimethyladenosine transferase [Chlamydophila abortus S26/3]
          Length = 278

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 143/285 (50%), Gaps = 18/285 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+ ++     + +   +   PKK + QNFL+D NIL+KI   S    G  V+EIG G G 
Sbjct: 1   MSRSSPEQLSRFLAEVHG-RPKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SP 118
           LT++L+  GA  V+ +EKD     +L++   Q P  LEI   DA K    +  +      
Sbjct: 60  LTEVLVNQGAH-VVALEKDS----MLEETLKQLPIHLEIT--DACKYPLSQLQDQGWQGK 112

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
            R++ANLPY+I T LL         P  W+++T++ Q EV  RITAQ     YG L++  
Sbjct: 113 GRVVANLPYHITTPLLRKLFLEA--PNQWKTVTVMIQDEVARRITAQPGGKEYGSLTIFL 170

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE-SLKKITQEAFGKRRKT 236
            +       F +SP  F P P+V S V+H     N P+   L      +T+ AFG+RRK 
Sbjct: 171 QFFVDVHYAFKVSPGCFLPKPQVASAVVHMTVKENFPLEEPLRTKFFSLTRAAFGQRRKL 230

Query: 237 LRQSLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L  +LK L  +      L Q       R E LS++D+ ++  +L+
Sbjct: 231 LANALKDLYPKERVFEALSQLHFSDKTRPETLSLDDYLKLFYLLS 275


>gi|255311159|ref|ZP_05353729.1| dimethyladenosine transferase [Chlamydia trachomatis 6276]
 gi|255317460|ref|ZP_05358706.1| dimethyladenosine transferase [Chlamydia trachomatis 6276s]
          Length = 277

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 13/280 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L + L       KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++
Sbjct: 4   SSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL+ GA  VI +EKD  F   L    SQ P  +EI       +   +        RI+AN
Sbjct: 64  LLSQGAN-VIALEKDPMFEGSL----SQLPMDIEITDACKYPLTSLEDKGWKGKGRIVAN 118

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY+I T LL  +      P  W+++T++ Q EV  RITA+     YG L+V   +    
Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADV 176

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242
              F +SP+ F+P P V S V+H   H         +E    +T+ AFG+RRK L  SLK
Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236

Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L  ++    +L Q G     R E + +E++ +I ++L D
Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|313672734|ref|YP_004050845.1| dimethyladenosine transferase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939490|gb|ADR18682.1| dimethyladenosine transferase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 266

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 8/259 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL++ + ++KI +++       V+EIG G G LT  +L  GA  +  IE D  
Sbjct: 16  KKSLGQHFLINQHYIEKILDAAYVSKDSRVLEIGPGCGALTVKILERGAD-LTAIEIDAV 74

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LK     +PN  +II  D  K+D            ++ NLPY +   +L       
Sbjct: 75  LVDFLKRYLHFYPN-FKIIHSDFTKIDKSLL---DGRYNVVGNLPYYVSVPILEKCTE-- 128

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                  ++T +FQKEV +RI +  +   Y  LSV   +      +F+IS   F+P+ KV
Sbjct: 129 -LIENINTMTFMFQKEVADRIISTPSKKSYSSLSVFCQYFFDIKKIFNISGGNFWPTTKV 187

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            STV+HFIP         +    + + +F  +RK L+ +L  +    L+++     N+RA
Sbjct: 188 ESTVLHFIPKKRQFDMDEKDFLNLVKLSFSSKRKMLKNNLHSIIDTGLINEFFKRDNVRA 247

Query: 262 ENLSIEDFCRITNILTDNQ 280
           E LS+EDF    N L + +
Sbjct: 248 EELSVEDFINFYNFLKNAK 266


>gi|57239132|ref|YP_180268.1| dimethyladenosine transferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579080|ref|YP_197292.1| dimethyladenosine transferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|93141342|sp|Q5HBC6|RSMA_EHRRW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|57161211|emb|CAH58125.1| dimethyladenosine transferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417706|emb|CAI26910.1| Dimethyladenosine transferase [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 262

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 104/263 (39%), Positives = 147/263 (55%), Gaps = 8/263 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y I PKK + Q F+   +I  KI   +G++   ++IEIG G G +T  +L    +K+I I
Sbjct: 5   YMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLISI 64

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           EKD +  PI   I  +   + E I  DAL +D         P+++IANLPY+I T LL  
Sbjct: 65  EKDSRLLPIHDKIIKKFQGKYEFILSDALDIDLRNIA--KPPVKVIANLPYSIATLLLIK 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           WI    +  F+ S TL+FQKEV +RI AQ N+ +YG LS+LT        M D  P +F 
Sbjct: 123 WI---NYINFFHSFTLMFQKEVADRIIAQPNNKNYGTLSILTQLFADVYKMQDFGPEIFS 179

Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQA 253
           P PKV S+VI+ +    P      + L+KI +  F +RRK +R +LK++    + +LH  
Sbjct: 180 PKPKVFSSVINIVVLPQPRFDVNYDKLRKIVKITFNQRRKMIRSTLKQITNNTDEILHSL 239

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
            I  NLR ENLSI+ FC I N +
Sbjct: 240 NIPNNLRPENLSIKQFCDIANCI 262


>gi|119870378|ref|YP_940330.1| dimethyladenosine transferase [Mycobacterium sp. KMS]
 gi|126437207|ref|YP_001072898.1| dimethyladenosine transferase [Mycobacterium sp. JLS]
 gi|226732600|sp|A3Q5I0|RSMA_MYCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732601|sp|A1UL32|RSMA_MYCSK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119696467|gb|ABL93540.1| dimethyladenosine transferase [Mycobacterium sp. KMS]
 gi|126237007|gb|ABO00408.1| dimethyladenosine transferase [Mycobacterium sp. JLS]
          Length = 294

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 127/286 (44%), Gaps = 20/286 (6%)

Query: 1   MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           MT+     + ++ +       P+K  GQNF+ D N +++I  +SG      V+E+G G G
Sbjct: 1   MTIRLLGRTEIRRLAKDIDFRPRKSFGQNFVHDANTVRRIVSASGVHRHDHVLEVGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNI 115
           +LT  LL  GA  V  +E D      L    + H     NRL ++  D L +      N 
Sbjct: 61  SLTLALLDRGAH-VTAVEIDPLLAQQLPTTIADHSHSEINRLTVLNQDILTLMPSDLEN- 118

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
             P  ++ANLPYN+    L + ++     P   S+ ++ Q EV ER+ A      YG  S
Sbjct: 119 -QPTALVANLPYNVAVPALLHLLAE---FPTIRSVMVMVQAEVAERLAADPGGKDYGVPS 174

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE---SLKKITQEAFG 231
               +         +SP VF+P P+V S ++    +   P P   +    +  +   AF 
Sbjct: 175 AKVRFYGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAFA 234

Query: 232 KRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
           +RRKT R +     G        L  A I+ + R E L+I DF R+
Sbjct: 235 QRRKTSRNAFAEWAGSGNESARRLLAASIDPSRRGETLAIADFVRL 280


>gi|313205524|ref|YP_004044701.1| dimethyladenosine transferase [Riemerella anatipestifer DSM 15868]
 gi|312444840|gb|ADQ81195.1| dimethyladenosine transferase [Riemerella anatipestifer DSM 15868]
 gi|315023396|gb|EFT36406.1| Dimethyladenosine transferase [Riemerella anatipestifer RA-YM]
 gi|325335044|gb|ADZ11318.1| Dimethyladenosine transferase (rRNA methylation) [Riemerella
           anatipestifer RA-GD]
          Length = 262

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/253 (34%), Positives = 125/253 (49%), Gaps = 9/253 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D NI  KI E+        V+E+G G G LT+ LL   + ++ V E 
Sbjct: 3   VKAKKHLGQHFLNDENIASKIVEALEVDVQDFVLEVGPGMGVLTKYLLNKNS-EIFVAEI 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    LK+   +   +  +   D LK +  + FN S  + +I N PYNI +++LF  I
Sbjct: 62  DVESIAYLKEHYPKLEEKHFV--GDFLKANLTEIFN-SEQVSVIGNFPYNISSQILFKII 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P    +  +FQKEV ER +A+  +  YG LSV+         +F +S +VF P 
Sbjct: 119 DNYAQIP---EMVGMFQKEVAERTSAEPRTKSYGILSVMVQAYYDVKYLFTVSENVFTPP 175

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +        E L K I +  F +RRK L  +LK L     L       
Sbjct: 176 PKVKSGVIRLTRNPKKGLEGNEVLFKQIVKAGFNQRRKKLSNALKGLNIPEALLTHNF-L 234

Query: 258 NLRAENLSIEDFC 270
            LRAE LS+EDF 
Sbjct: 235 TLRAEELSVEDFI 247


>gi|115481328|ref|NP_001064257.1| Os10g0183900 [Oryza sativa Japonica Group]
 gi|110288720|gb|ABG65951.1| dimethyladenosine transferase, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113638866|dbj|BAF26171.1| Os10g0183900 [Oryza sativa Japonica Group]
 gi|215704636|dbj|BAG94264.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218184228|gb|EEC66655.1| hypothetical protein OsI_32926 [Oryza sativa Indica Group]
          Length = 364

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 122/272 (44%), Gaps = 20/272 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I  +K  GQ+ L +  ++  I E +G     TV+EIG G GNLT+ LL  G + V+ +E
Sbjct: 31  GIPFEKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVE 90

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  +RL++IQ D LK D   F         +AN+PY I + L F
Sbjct: 91  LDPRMVLELNRRFQGDPLASRLKVIQGDVLKCDLPYF------DICVANIPYQISSPLTF 144

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +S     P +    ++FQ+E   R+ AQ     Y RLSV     ++ + +  +  + F
Sbjct: 145 KLLSHR---PIFRCAVIMFQREFAMRLVAQPGDSLYCRLSVNVQLLSRVSHLLKVGRNNF 201

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---- 251
            P PKV S+V+   P     P   +    + +  F ++ KTL    K+     LL     
Sbjct: 202 RPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRLCFNRKNKTLGAIFKQKRVLELLEKNYK 261

Query: 252 -----QAGIETNLRAENLSIEDFCRITNILTD 278
                Q   +     E +S +D   +++++ D
Sbjct: 262 TMQSLQLTSDAEKGEEKMSPDDVALLSSMVDD 293


>gi|332704211|ref|ZP_08424299.1| Ribosomal RNA small subunit methyltransferase A [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554360|gb|EGJ51404.1| Ribosomal RNA small subunit methyltransferase A [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 265

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 92/258 (35%), Positives = 133/258 (51%), Gaps = 12/258 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             K+ +GQNFL D NI +KI  +    +G TV+EIG G G LT+ L    A++V+ +EKD
Sbjct: 9   FAKRSLGQNFLQDENIARKIVAALELQEGDTVVEIGPGRGALTRWLDESPAQRVLALEKD 68

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +      + +   HP R+EI+  DAL+  +E+   + S ++ I NLPYNI + L++  +S
Sbjct: 69  KDLA---QQLGMVHP-RVEIVVADALRYSWEELAGVES-LKYIGNLPYNIASPLMWEIVS 123

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P +     + Q EVG R+TA   +  YG LS           +F + P VF P P
Sbjct: 124 R---SPRYSRAVFMVQHEVGLRLTACPGNKSYGALSAWIQSFANVRYLFRVPPQVFRPKP 180

Query: 200 KVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG--IE 256
           KV S V+ F P    I P     L K+    F KRRK LR  L+   GE +   AG  I+
Sbjct: 181 KVDSAVLCFEPLAKEIRPTHPALLAKLLHICFQKRRKQLRNILRDWWGERVGTSAGEFIK 240

Query: 257 -TNLRAENLSIEDFCRIT 273
               R E L+ ++F R+ 
Sbjct: 241 LAEARPEELTPKEFQRLA 258


>gi|218249123|ref|YP_002374494.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801]
 gi|226729777|sp|B7JWJ7|RSMA_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|218169601|gb|ACK68338.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801]
          Length = 272

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 130/269 (48%), Gaps = 13/269 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L     L +I E++       V+EIG G G LT+ LL L  + ++ +E D
Sbjct: 3   QPRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPL-VQSIVAVELD 61

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135
           +     L        N   +++ D L +D     E+F       +++AN+PYNI + +L 
Sbjct: 62  RDLCYRLAKSFGNF-NHFLLLEGDILSLDLTTQLEQFPQFQPINKVVANIPYNITSPILE 120

Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             + +   P  P +E + LL QKEV +RI A   S  YG LSV T +  +   + ++   
Sbjct: 121 KLLGSIAHPQHPSYELIVLLMQKEVAQRIVASPQSKAYGALSVRTQYLAQCDYICEVPSK 180

Query: 194 VFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248
            F P PKV S VI   P     P    + L ++ +  F  RRK L  +LK +  ++    
Sbjct: 181 AFDPPPKVDSAVIRLTPRSLETPAINPQKLDQLVKLGFANRRKMLHNNLKSIIDKDHLTL 240

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           LL Q  I   +RAE LS+E +   +N+L 
Sbjct: 241 LLDQLQINPQVRAEELSLEQWIMFSNLLE 269


>gi|297157778|gb|ADI07490.1| dimethyladenosine transferase [Streptomyces bingchenggensis BCW-1]
          Length = 301

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL
Sbjct: 12  PADIRELAARLGVRPTKQRGQNFVIDANTVRRIVRTADVRPDDVVVEVGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V  +E D      L    ++      +R E++  DAL +         +P  ++
Sbjct: 72  E-AADRVTAVEIDDVLAAALPSTVQERLPGRADRFELVHSDALHITE---LPGPAPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 128 ANLPYNVAVPVLLHMLDR---FPTIERTLVMVQAEVADRLAAAPGSKVYGVPSVKAAWYA 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR-- 238
           +      I  +VF+P+P V S ++  +    P+      + + ++   AF +RRKTLR  
Sbjct: 185 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRPAPLRTTATKDQVFRVIDAAFAQRRKTLRAA 244

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
               +      E  L  AGI    R E L++E F  I  
Sbjct: 245 LAGWAGSAAAAEAALTAAGISPQARGEALTVEQFAAIAE 283


>gi|304569709|ref|YP_011015.2| dimethyladenosine transferase [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 291

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/262 (33%), Positives = 127/262 (48%), Gaps = 8/262 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK +GQNFL D NI  +IA          VIEIG GPG LT+ +   G  ++ ++EKD
Sbjct: 29  RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 88

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             +    +          +++  DAL   +E+  + + P ++I NLPYN+ + L+++  S
Sbjct: 89  HHWAREHRLHPLAGTPEAQVVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMWDICS 147

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     + + QKEVGERI A   S  YG LSV     TK    F + PHVF P P
Sbjct: 148 RA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVFTPRP 204

Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255
           KV S V+ F P    P     + L ++ +  F +RRK L+  L+   G     LL   GI
Sbjct: 205 KVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLAGLGI 264

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +   R E LS E F  +   + 
Sbjct: 265 DPAARPETLSPERFIALGEAVA 286


>gi|256824221|ref|YP_003148181.1| dimethyladenosine transferase [Kytococcus sedentarius DSM 20547]
 gi|256687614|gb|ACV05416.1| dimethyladenosine transferase [Kytococcus sedentarius DSM 20547]
          Length = 302

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 126/285 (44%), Gaps = 20/285 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K  GQNF++D   +++I  +SG   G  V+E+G G G+LT  LL
Sbjct: 25  PARVRELADRLGVSPTKQWGQNFVIDKGTVRRIVRASGVGPGDHVVEVGPGLGSLTLALL 84

Query: 67  TLGARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            +    +  +E D +    L D  +    +    L ++  DAL+V         +P  ++
Sbjct: 85  PV-VDSLTAVEVDPRLAEALPDTVAALAPERATDLRVVHADALRVTE---LPGPAPTALV 140

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYNI   ++  ++      P   ++ ++ Q EV ER++A   S  YG  S    W  
Sbjct: 141 ANLPYNIAVPVVLTFLER---FPSLRTVLVMVQLEVAERMSAAPGSKIYGAPSPKCAWYG 197

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
              +   I  +VF+P+P V S ++              + +      AF +RRKTLR +L
Sbjct: 198 PTRLAGRIGRNVFWPAPNVDSGLVRIDVQPREDAGVSRQEVFACIDAAFAQRRKTLRAAL 257

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT---NILTD 278
               G     E  L  AGI+   R E L +  F  +    N L +
Sbjct: 258 AEWAGSAQQAEEALVAAGIDPRTRGEVLDVHGFIALAAARNRLRE 302


>gi|58696723|ref|ZP_00372268.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537091|gb|EAL60211.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 313

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 109/302 (36%), Positives = 152/302 (50%), Gaps = 43/302 (14%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  + + PKK +GQNF+L   I KKI   +GSL+   VIEIG G G LT+ +L    + +
Sbjct: 1   MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           + IEKD+        + ++H  +  II+ DAL V  E+   I  P+++IANLPYNI   L
Sbjct: 61  LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHVTEEEL--IERPVKVIANLPYNISVVL 118

Query: 134 LFNWISAD--------------------------------------TWPPFWESLTLLFQ 155
              W++                                            F+ +LTL+FQ
Sbjct: 119 FLKWLNNRIIEADALHVTEEELIERPVKVIANLPYNISVVLFLKWLNNIKFFTNLTLMFQ 178

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP- 214
           KEV +RITA+ NS  YG LSVL+         FDI P  FFP PK+ S+VI   P   P 
Sbjct: 179 KEVADRITARPNSKDYGSLSVLSQLLCDIKKEFDIEPKEFFPRPKIHSSVITVNPLPIPK 238

Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGIETNLRAENLSIEDFCRI 272
               LE+L ++T+  F +RRK LR SL+ +    E +L  A +  N R ENL+IE FC +
Sbjct: 239 FAVNLETLTRLTRAVFSQRRKMLRNSLQNITNHTETVLENAKLSGNERPENLTIEQFCLL 298

Query: 273 TN 274
            N
Sbjct: 299 AN 300


>gi|304391144|ref|ZP_07373096.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326027|gb|EFL93273.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 309

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 102/297 (34%), Positives = 143/297 (48%), Gaps = 34/297 (11%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  +  + +  ++ P K  GQNF+ D   +++IA ++G   G TV+EIG G G+LT  LL
Sbjct: 6   ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKV----DFEKFFNISSPI 119
            LG R VI IE DQ+    L    +QH      L ++  DAL++    D E     ++P 
Sbjct: 66  ELGCR-VIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLELPAGWTAPH 124

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R++ANLPYN+ T LL +++      P  ES  ++ Q EV +R  A      YG  SV   
Sbjct: 125 RLVANLPYNVATPLLLHFLE---VLPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL------------------NPIPCCLES 221
           W  +A   F +  +VF+P P V STV+ F                        I    + 
Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKLSAEGLTDEAIETLRQE 241

Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           +      AF +RRKTLRQSL    G      NLL   GI   LRAE LS+ DF +I 
Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAVGITPGLRAERLSVIDFTKIA 298


>gi|229495356|ref|ZP_04389091.1| dimethyladenosine transferase [Porphyromonas endodontalis ATCC
           35406]
 gi|229317799|gb|EEN83697.1| dimethyladenosine transferase [Porphyromonas endodontalis ATCC
           35406]
          Length = 294

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/260 (34%), Positives = 129/260 (49%), Gaps = 8/260 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK +GQ+FL + ++ + IAES  S   I ++EIG G G LT+ LL LG  +V  +E
Sbjct: 32  KVRAKKALGQHFLTNPSVARAIAESVLSWRDIPILEIGPGMGMLTKELLDLG-LEVYALE 90

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPYNIGTRLLF 135
            D +    L+   S       + + D LK+  ++        P  +I N PYNI +++ F
Sbjct: 91  IDTESVEYLQRNFSWFAQGEHLTEGDVLKLPADELIPGQPQTPFVLIGNYPYNISSQIFF 150

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      P       + QKEV ER+TA      YG LSVL         +F +S   F
Sbjct: 151 RLLELRDRVP---CCAGMLQKEVAERLTAPPGGRDYGILSVLLRCWYHCEYLFTVSELDF 207

Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            P PKV   V+  I +    +P   E  KK+ + AF +RRKTLR SL+ L  E     + 
Sbjct: 208 DPPPKVKGGVLRLIRNDRKELPVDEELFKKVVKAAFSQRRKTLRNSLRTLFPEGY-DFSD 266

Query: 255 IETNLRAENLSIEDFCRITN 274
              +LRAE L +ED+ R+T 
Sbjct: 267 PIFSLRAERLDVEDYIRLTQ 286


>gi|327262022|ref|XP_003215825.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
           [Anolis carolinensis]
          Length = 345

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/299 (29%), Positives = 144/299 (48%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++  ++  +K+   K + QNFLLDL +  KIA S+G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIGEVIKLFKLKAVKQLSQNFLLDLRLTDKIARSAGNLKDAHVCEVGPGPGGITRAI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  G  +++++EKD +F P L+ +S   P ++ ++  D L     + F         +  
Sbjct: 74  LNAGVAELLLVEKDPRFIPGLQMLSEAAPGKVRVVHGDILTYKLGQAFPNHLIKNWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             I II NLP+++ T L+  W+         +      LTL FQKEVGER+TA   +   
Sbjct: 134 PDIHIIGNLPFSVSTPLIIKWLENISKRDGPFRYGRTQLTLTFQKEVGERLTASTGTRQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS+++ +       F I    F P P V  TV+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSIMSQYLCTVHKCFTIPGKAFVPKPDVDVTVVHFTPLVQPKIEQPFKLVEKVVQSVF 253

Query: 231 GKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK     ++ L          E +L  A ++  LR   LS+  F  + ++     D
Sbjct: 254 QFRRKYCHHGIRILFPEATRLEKAEQMLMLADVDPTLRPTQLSMFHFKNLCDVYRKMCD 312


>gi|289432297|ref|YP_003462170.1| dimethyladenosine transferase [Dehalococcoides sp. GT]
 gi|288946017|gb|ADC73714.1| dimethyladenosine transferase [Dehalococcoides sp. GT]
          Length = 291

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/271 (30%), Positives = 137/271 (50%), Gaps = 15/271 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y +  +K +GQ+FL+   +L KI  ++      TVIE+G G G LT+ LL   A
Sbjct: 20  KEMMEGYTLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGVLTEELLKR-A 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +VI +E D +    L +    +PN   +I  D LK   E+      P +++ANLPY I 
Sbjct: 79  GQVIAVELDDKLIDALTEKFKGYPN-FRLIHSDILKTSPEEILGQDVPYKLVANLPYYIT 137

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +   ++ A   P   ES+ ++ QKEV + I A+      G L++   +    +++  +
Sbjct: 138 SAVFRQFLEAKLKP---ESMVVMVQKEVAKNIVAKTGDM--GLLTLSVRFYGNPSLVSVV 192

Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGG-- 246
               F+P P+V S ++   IP    +    E    K+ +  FG RRKTL  +L +  G  
Sbjct: 193 PGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEVDFFKLARAGFGTRRKTLLNALAQGLGIS 252

Query: 247 ----ENLLHQAGIETNLRAENLSIEDFCRIT 273
                +LL+ AGI+   RAE LS+E++ ++ 
Sbjct: 253 KPVILSLLNGAGIDPARRAETLSMEEWKKLC 283


>gi|94985245|ref|YP_604609.1| dimethyladenosine transferase [Deinococcus geothermalis DSM 11300]
 gi|118600863|sp|Q1IZ94|RSMA_DEIGD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94555526|gb|ABF45440.1| dimethyladenosine transferase [Deinococcus geothermalis DSM 11300]
          Length = 281

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 93/277 (33%), Positives = 145/277 (52%), Gaps = 18/277 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               ++ +L+ + + P K +GQNFL+D NIL+ IA++ G+  G+ V+E+G G G LT+ L
Sbjct: 13  SPARVRDLLTRHGLRPTKSLGQNFLIDGNILRAIAQAGGAAPGVPVLEVGPGLGVLTREL 72

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              GA  V  +EKD++  P+L +  +     ++++  DAL+ D+       +  R+IANL
Sbjct: 73  AARGAH-VTALEKDERLRPVLAETLAGQD--VQVVWGDALEFDYASL---PAGTRVIANL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I   LL  ++ A    P   S T+L QKEV  R+ A+    +YG LS L        
Sbjct: 127 PYYITGPLLARFMQA----PGIISATVLVQKEVAGRLAARPGEDNYGFLSALAALYGTVQ 182

Query: 186 MMFDISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-- 242
            + D+    F P+P VTS+V+        P P    +  K  + A   RRKTLR +L+  
Sbjct: 183 HVRDVPKGAFLPAPDVTSSVVRLDFDRARPAPEP--AFLKFVEAALHHRRKTLRNNLRLA 240

Query: 243 RLGGE---NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             GGE     L  AG+  ++RAE++ +ED   +   L
Sbjct: 241 GFGGEAVGEALMAAGLRPDVRAEDVPLEDLRVLARRL 277


>gi|147791996|emb|CAN77505.1| hypothetical protein VITISV_017803 [Vitis vinifera]
          Length = 350

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 112/242 (46%), Gaps = 14/242 (5%)

Query: 15  SHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
            HY   +   K  GQ+ L +  ++  I E SG      ++EIG G GNLT+ LL  G + 
Sbjct: 19  KHYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KS 77

Query: 73  VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           VI +E D +    L+      P  NRLE+IQ D L+ D   F         +AN+PY I 
Sbjct: 78  VIAVEVDPRMVLELQRRFQGTPLSNRLEVIQGDVLRCDLPYF------DICVANIPYQIS 131

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + L F  ++     P +    ++FQ+E   R+ AQ     Y RLSV T    + + +  +
Sbjct: 132 SPLTFKLLAHR---PVFRCAVIMFQREFAMRLVAQPGDNLYCRLSVNTQLLARVSHLLKV 188

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             + F P PKV S+V+   P     P   +    + +  F ++ KTL    ++    +LL
Sbjct: 189 GKNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTLGSIFRQKSVLSLL 248

Query: 251 HQ 252
            +
Sbjct: 249 EK 250


>gi|321476312|gb|EFX87273.1| hypothetical protein DAPPUDRAFT_307097 [Daphnia pulex]
          Length = 332

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 90/295 (30%), Positives = 144/295 (48%), Gaps = 23/295 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ +L+ Y++   K + QNFL+D  +  K+  ++G +    V E+G G G+LT+++
Sbjct: 12  PLPAVRDLLNLYRLQAVKQLSQNFLIDPKLTSKLVSAAGKITNGYVCEVGPGAGSLTRVI 71

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L+    K++V+EKD++F P L+ ++    +R+ I+  D L  +    F         +  
Sbjct: 72  LSRNVNKLVVVEKDKRFQPPLEMLAEASGDRMSIVWGDVLSHNLTNAFPEESKRDWTDQP 131

Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             I II NLP+NI T L+  W+ A     + W      +TL FQKEV ER+ A+  S   
Sbjct: 132 PNIHIIGNLPFNIATPLIIRWLKAISERSNAWVHGRVPMTLTFQKEVAERMVAKIGSRER 191

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+          F I    F P P V   V+HF P   P I    + ++K+ +  F
Sbjct: 192 CRLSVMVQHLCYVEHKFTIPGKAFVPKPNVDVGVVHFTPLATPKIQAPFKLVEKVARNTF 251

Query: 231 GKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             R+K  R+ L+ L            LL  A ++  LR   LSIE+F RI    +
Sbjct: 252 SFRQKYCRRGLETLFPSSMRDEQTHKLLQLADVDGTLRPFELSIEEFNRICQAYS 306


>gi|238795194|ref|ZP_04638781.1| Dimethyladenosine transferase [Yersinia intermedia ATCC 29909]
 gi|238725481|gb|EEQ17048.1| Dimethyladenosine transferase [Yersinia intermedia ATCC 29909]
          Length = 232

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G G LT+ +       + VIE D+     L     Q  ++L I Q DA+KV+F 
Sbjct: 1   MVEIGPGLGALTEPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFS 58

Query: 111 KFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
           +   +   P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS 
Sbjct: 59  ELAELAGQPLRVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSK 115

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQ 227
            YGRL+V+  +      + ++ P  F P+PKV S V+  IPH+N P P   +  L ++T 
Sbjct: 116 AYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLSRVTT 175

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +AF +RRKT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 176 QAFNQRRKTVRNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 225


>gi|89890027|ref|ZP_01201538.1| dimethyladenosine transferase [Flavobacteria bacterium BBFL7]
 gi|89518300|gb|EAS20956.1| dimethyladenosine transferase [Flavobacteria bacterium BBFL7]
          Length = 280

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 85/268 (31%), Positives = 134/268 (50%), Gaps = 14/268 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +  KK++GQ+FL D ++ ++IA+         ++EIG G G LT+ ++     KV  +E
Sbjct: 17  GVTAKKHLGQHFLKDEDVAQRIADVLSYDGYDQILEIGPGTGVLTKHVIRKN-MKVTALE 75

Query: 78  KDQQFFPILKDISS------QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            D +    LK           +    ++I+ D LK D ++ +   S   II N PYNI T
Sbjct: 76  LDSESVIYLKHSFPLEHVKIVNDQTFQVIEADFLKKDLKEIYGEQS-FAIIGNFPYNIST 134

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +++F  I      P +  +   FQKEV +RI A   S  YG LSVL     +A  +F + 
Sbjct: 135 QIVFKTIENREQIPEFGGM---FQKEVAQRICAPHGSKTYGILSVLAQAYYEADYVFTVG 191

Query: 192 PHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           P VF P P+V S V+      N   + C    L+++ + AF +RRKTLR SLK L   + 
Sbjct: 192 PEVFDPPPRVDSGVLFLKRRDNYDNLTCSYSILRQVVKLAFQQRRKTLRNSLKTLNLPDE 251

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           + +  I  +LR E +S++ F  +   + 
Sbjct: 252 MREKDI-FSLRPEQISVDAFVELATEIE 278


>gi|46200223|ref|YP_005890.1| dimethyladenosine transferase [Thermus thermophilus HB27]
 gi|62900548|sp|Q72GC7|RSMA_THET2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|46197851|gb|AAS82263.1| dimethyladenosine transferase [Thermus thermophilus HB27]
          Length = 271

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 143/282 (50%), Gaps = 19/282 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+      S++ +L  + +   K  GQNFL+    L++I E++    G  V E+G G G 
Sbjct: 1   MSKLASPQSVRALLERHGLFADKRFGQNFLVSEVHLRRIVEAARPFTG-PVFEVGPGLGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA +V  IEKD +  P+L++  S  P  + ++  DAL   +E+    S    
Sbjct: 60  LTRALLEAGA-EVTAIEKDLRLRPVLEETLSGLP--VRLVFQDALLYPWEEVPQGS---L 113

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY+I T L+   +        +  L  L QKEV ER+TA+  +P YG L++    
Sbjct: 114 LVANLPYHIATPLVTRLLKTGR----FARLVFLVQKEVAERMTARPKTPAYGVLTLRVAH 169

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
              A  +FD+ P  FFP PKV S+++   P   P       L ++ + AFGKRRKTL  +
Sbjct: 170 HAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGAP---DDPGLFRLVEAAFGKRRKTLLNA 226

Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L   G      E  L   G+   +RAE L +E F R+   L 
Sbjct: 227 LAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268


>gi|320353106|ref|YP_004194445.1| dimethyladenosine transferase [Desulfobulbus propionicus DSM 2032]
 gi|320121608|gb|ADW17154.1| dimethyladenosine transferase [Desulfobulbus propionicus DSM 2032]
          Length = 304

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 129/283 (45%), Gaps = 18/283 (6%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
              K +L    + P K +GQNFL+     ++I + +G      VIE+G G G LT+ L  
Sbjct: 4   QPTKQLLKRQGLAPHKKLGQNFLVHERTPRRIVDLAGLQPDDQVIEVGVGLGALTRPLAA 63

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             A KVI +E D       ++     P  +E++  D LKVDF         ++I+ANLPY
Sbjct: 64  AVA-KVIGLEADSGIIRFHQE-QQDLPANVELVHADVLKVDFAPLVEPGKRLKIVANLPY 121

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I +  LF  I       F     ++ QKEV +R+ AQ  S  YG  +VL     +   +
Sbjct: 122 SISSPFLFRLIDQAELMDF---AVVMLQKEVAQRLMAQPGSKEYGAPTVLLAACAEVRPL 178

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC------CLESLKKITQEAFGKRRKTLRQSL 241
             ++P  F P PKV S VI    H  P           +   +I   AFG+RRKTL   L
Sbjct: 179 LAVNPAEFHPRPKVDSLVIRIDFHPRPKRVQDLGAFDRKLFTRIVHAAFGQRRKTLLNGL 238

Query: 242 K-------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                   +      +  AG+  + RAE LS+E F  +T  L+
Sbjct: 239 AAARVLDEKEKLAEAILAAGVSPSDRAETLSLEQFVTLTRELS 281


>gi|145219843|ref|YP_001130552.1| dimethyladenosine transferase [Prosthecochloris vibrioformis DSM
           265]
 gi|145206007|gb|ABP37050.1| dimethyladenosine transferase [Chlorobium phaeovibrioides DSM 265]
          Length = 270

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 137/268 (51%), Gaps = 11/268 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++    H +I  KK +GQNFL D NI +KI  +SG+L    ++EIG G G LT+ +  L 
Sbjct: 1   MRVEYKHTEIAVKKKLGQNFLTDSNITRKIVAASGALPTERILEIGPGFGALTKEISALT 60

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
                 +EKD+     ++    ++P+ L++I+ D L +D E+      P+R++ N+PY+I
Sbjct: 61  PH-FTAVEKDRALAAFIRR---EYPS-LQMIEADFLDLDLEELSTDG-PLRVLGNIPYSI 114

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T ++F  + A        S TL+ Q EV  R+TA+ ++  YG L+V          +F 
Sbjct: 115 TTPIIFKLLEAR---HNILSATLMMQHEVALRLTAKPSTKEYGILAVQLQSFCTVRYLFK 171

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +   VF P P V S VI   P          + ++  + AF +RRKTL  +L+     + 
Sbjct: 172 VGRKVFKPQPNVDSAVISMTPKKESPVENPLAYRQFVRTAFHQRRKTLLNNLRDSYDLSS 231

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           L    +   LRAE LSIE+F  + + L 
Sbjct: 232 LTPETL--KLRAEALSIEEFITLFSQLR 257


>gi|258647596|ref|ZP_05735065.1| dimethyladenosine transferase [Prevotella tannerae ATCC 51259]
 gi|260852403|gb|EEX72272.1| dimethyladenosine transferase [Prevotella tannerae ATCC 51259]
          Length = 271

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 134/268 (50%), Gaps = 16/268 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL   + IA++  +   + V+E+G G G LTQ LL  G R+  V+E 
Sbjct: 4   VKPKKNLGQHFLTDLPTAQAIADTIDACPDLPVLEVGPGMGMLTQFLLPKG-RETKVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L +      +   I+ +D L++D  K F    P  +  N PY+I +++ F  +
Sbjct: 63  DRESVAYLLNRWPALADN--ILGEDFLRMDLSKVFG-GRPFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               + P     T + QKE  ERI A   +  YG LSVL         +F + PHVF P 
Sbjct: 120 DFKDYIP---CCTGMIQKEAAERIAAPPGTKAYGILSVLLQRWYSVEYLFTVEPHVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE------NLLH 251
           PKV S V+    + +    C  + L+++ + +F +RRK LR SLK L  +       +L 
Sbjct: 177 PKVRSAVVRMTRNDVTDCGCNEQLLRRVVKTSFNQRRKMLRGSLKPLFAQLNNEQNKVLD 236

Query: 252 QAG--IETNLRAENLSIEDFCRITNILT 277
                +   +R E LS+E F  +TN + 
Sbjct: 237 HTDFLLPLTMRPEQLSVEQFVDLTNRVE 264


>gi|16329260|ref|NP_439988.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
 gi|27151564|sp|P72666|RSMA_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|1651740|dbj|BAA16668.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
          Length = 284

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 87/277 (31%), Positives = 134/277 (48%), Gaps = 21/277 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDG--------ITVIEIGAGPGNLTQMLLTLGA 70
             P+K  GQ++L     L+ I  ++    G          ++EIG G G LT+ LL  G 
Sbjct: 3   FRPRKRFGQHWLNHEPTLQAIVAAADIQSGAPQSGSLRDRLLEIGPGMGVLTKQLLATG- 61

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLP 126
             V+ +E D+     L+    Q  N L +++ D L +D               +++AN+P
Sbjct: 62  NPVVAVELDRDLCLKLRKKLGQRENFL-LLEGDVLILDLNALLQDFPQFSPLNKVVANIP 120

Query: 127 YNIGTRLLFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           YNI + +L   +     P  P +E++ LL QKE+ ER+TAQ ++  YG LSV   +  + 
Sbjct: 121 YNITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPSTKAYGALSVRMQYLARV 180

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             + D+ P  F P PKV S VI   P+    +P     L ++    F  RRK LR +LK 
Sbjct: 181 DWIVDVPPKAFTPPPKVDSAVIRLTPYPVEQLPGDRRLLDQLLCLGFANRRKMLRNNLKG 240

Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276
           L        LL Q  + +  RAE+LS+E +  +TN+L
Sbjct: 241 LIAPEQLTTLLEQLALPSTARAEDLSLEQWLELTNLL 277


>gi|333029846|ref|ZP_08457907.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides
           coprosuis DSM 18011]
 gi|332740443|gb|EGJ70925.1| Ribosomal RNA small subunit methyltransferase A [Bacteroides
           coprosuis DSM 18011]
          Length = 262

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 88/260 (33%), Positives = 133/260 (51%), Gaps = 8/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKKY+GQ+FL D  I + IA +   +  I ++E+G G G LTQ LL    R + V++ 
Sbjct: 4   VKPKKYLGQHFLKDQKIAQDIANTVDLIPEIPILEVGPGMGVLTQYLLP-KERPIKVVDL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +      N  +II+ D L ++  + F+   P  +  N PYNI +++ F  +
Sbjct: 63  DTESIFYLYEEFPALKN--DIIEADFLAMNLNQVFD-GKPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A+     YG LSVL         +F +S  VF P 
Sbjct: 120 DNKEIIPL---CTGMIQKEVAERIAAKPGKKTYGILSVLIQAWYDVEYLFTVSEKVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +  + + C  +  K++ +  F +RRKTLR S+K + G+N         
Sbjct: 177 PKVKSAVISMKRNNVSALGCDEKLFKQVVKTTFNQRRKTLRNSIKPILGKNSPITEDDIF 236

Query: 258 NLRAENLSIEDFCRITNILT 277
             R E LS+E+F +ITN++ 
Sbjct: 237 MKRPEQLSVEEFIKITNLVE 256


>gi|325912354|ref|ZP_08174750.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D]
 gi|325475825|gb|EGC78995.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D]
          Length = 295

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 156/299 (52%), Gaps = 25/299 (8%)

Query: 3   MNNKSH-----SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M+N          + I++ Y +  KK +GQNFL+DL I+KKI  S+G ++   VIEIG G
Sbjct: 1   MSNSIPIATPLRTRAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVECSQVIEIGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN-----RLEIIQDDALK----V 107
            G+LT+ LL  GA KV+  E D     IL  ++ +Q  N     R  II  D LK     
Sbjct: 61  IGSLTEQLLLAGA-KVLAYEVDPDLPDILYNELPAQIGNYELNDRFRIIMKDILKADFAT 119

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   +F+++ PI ++ANLPY I T ++   + +   P     LTL+ QKEV ERI+A   
Sbjct: 120 DIADYFDVNQPIIVVANLPYYITTPIILKLMHS---PIKISQLTLMMQKEVAERISAAHK 176

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KIT 226
           S  YG L++           F++    F PSPKV S V+   P  + +    E L  +I 
Sbjct: 177 SKAYGPLTIAVKKDMDVDFAFEVKRTSFMPSPKVDSAVVVLKPLEHKLLIEHEDLFNQIV 236

Query: 227 QEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           + AF +RRKTL  +LK L  +      LL+   +++N+R E LSI  +  ++  + + +
Sbjct: 237 KLAFSQRRKTLNNNLKSLIKDKDARQKLLNDLNLDSNIRPEELSILQYIELSKKIFEQR 295


>gi|298492284|ref|YP_003722461.1| dimethyladenosine transferase ['Nostoc azollae' 0708]
 gi|298234202|gb|ADI65338.1| dimethyladenosine transferase ['Nostoc azollae' 0708]
          Length = 277

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 13/268 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P+K   Q++L     L  I +++   +   V+EIG G G LT+ LL L    ++ +E 
Sbjct: 2   VQPRKQFAQHWLKSEKALNTIVKAAECQETDRVLEIGPGTGILTRRLLPL-VHSLLAVEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLL 134
           D     +L     +  N L ++Q D L ++       F       +++AN+PYNI   ++
Sbjct: 61  DPDLCKLLVKQLGERENFL-LLQGDFLTLNVPSQLTAFSKFQKQNKVVANIPYNITGPII 119

Query: 135 FNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
              +   A   P  ++S+ LL QKEV ER+ A+  S  +G LS+   +     ++  +  
Sbjct: 120 EKLLGTIASPNPEPYDSIVLLVQKEVAERLYAKPGSRSFGALSLRVQYLADCELICSVPA 179

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248
             F+P PKV S V+  +P    IP    + L+ + +  FG +RK LR +L+ +   +   
Sbjct: 180 GAFYPPPKVDSAVVRLLPRQIEIPVNDPKKLENLVKLGFGSKRKMLRNNLQSVVDRDRLT 239

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNI 275
            LL Q  I   +RAE+LS+  +  + N+
Sbjct: 240 QLLEQLEINPQVRAEDLSVSQWVTLVNL 267


>gi|323697933|ref|ZP_08109845.1| dimethyladenosine transferase [Desulfovibrio sp. ND132]
 gi|323457865|gb|EGB13730.1| dimethyladenosine transferase [Desulfovibrio desulfuricans ND132]
          Length = 260

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 88/259 (33%), Positives = 133/259 (51%), Gaps = 13/259 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              KK +GQNFL D NI +KI ++     G ++IEIG G G LT+ L+  GAR + V+E 
Sbjct: 8   HRAKKSLGQNFLTDRNICRKIVDALAPTPGASIIEIGPGQGALTEHLVETGAR-LRVVEM 66

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D      L++        LE+I+ DALK  + +  N   P+RII NLPYN+G++L+++ +
Sbjct: 67  DDDLADRLEERWPD----LEVIRADALKFPWAEL-NAEGPVRIIGNLPYNVGSKLIWDIV 121

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S        E    + Q EV  R+TA+  S  YG L+      +    +F + P VF P 
Sbjct: 122 SRVE---TLERAVFMVQHEVALRLTAEPGSKAYGGLTAWVRNFSDTRYLFKVPPTVFRPR 178

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAG 254
           PKV S V+ F P      P   + L ++ +  F +RRK +   LK+      E    + G
Sbjct: 179 PKVDSAVVRFDPLPAGARPEDPDRLAELIKLLFQQRRKQISTILKKRMTPAVEQWFREEG 238

Query: 255 IETNLRAENLSIEDFCRIT 273
           +  +LR ENL+   F  ++
Sbjct: 239 VSPSLRPENLTPTQFRALS 257


>gi|149277463|ref|ZP_01883604.1| dimethyladenosine transferase [Pedobacter sp. BAL39]
 gi|149231696|gb|EDM37074.1| dimethyladenosine transferase [Pedobacter sp. BAL39]
          Length = 260

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 124/261 (47%), Gaps = 10/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  KK++GQ+FL D  I  +I +     D    V+E+G G G L+ +LL        +I+
Sbjct: 4   VRAKKHLGQHFLTDKKIAARIVDGLVHTDQYREVLEVGPGMGILSDILLDRDYLDTFLID 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D + +  LKD   Q   RL  I  D L +D    F       +I N PYNI +++LF  
Sbjct: 64  IDVESYEFLKDKYPQLGARL--INGDFLALDLSSIF--KGKYAVIGNFPYNISSQILFKI 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +           +  +FQKEV ER  ++  +  YG LSVL         +F + P  F P
Sbjct: 120 LDNREH---VVEMVGMFQKEVAERCASKSGTKEYGILSVLIQAYYDIEYLFTVKPGTFNP 176

Query: 198 SPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI      ++ +PC  +   +  +  F +RRKTLR +L  +  ++ +      
Sbjct: 177 PPKVNSGVIRLSRNKIDTLPCDEKLFWRTVKAGFNQRRKTLRNALSGVVSKDRMDDHFF- 235

Query: 257 TNLRAENLSIEDFCRITNILT 277
            + RAE LS++ F  +T  LT
Sbjct: 236 FDKRAEQLSVDQFIELTQHLT 256


>gi|165933603|ref|YP_001650392.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Rickettsia rickettsii str. Iowa]
 gi|165908690|gb|ABY72986.1| dimethyladenosine transferase [Rickettsia rickettsii str. Iowa]
          Length = 315

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 153/303 (50%), Gaps = 38/303 (12%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + +++ P +  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 17  PSIAKHAALHQVNPLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 76

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113
                + VIE D++  P+L +I   +PN L II+ DALK++                   
Sbjct: 77  KNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKKR 135

Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                             I   + II+NLPY+IGT L+  W+          S+TL+ QK
Sbjct: 136 EAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 192

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           EV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP+ 
Sbjct: 193 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPLS 252

Query: 217 CCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273
             L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI 
Sbjct: 253 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLNINDNYRAENLAPQDYLRIA 312

Query: 274 NIL 276
            IL
Sbjct: 313 EIL 315


>gi|296532229|ref|ZP_06894977.1| dimethyladenosine transferase [Roseomonas cervicalis ATCC 49957]
 gi|296267446|gb|EFH13323.1| dimethyladenosine transferase [Roseomonas cervicalis ATCC 49957]
          Length = 235

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 104/232 (44%), Positives = 146/232 (62%), Gaps = 7/232 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG GPG LT+ LL   A  V  +E D++    L+++S+ +P RL I++ DAL++D  
Sbjct: 1   MLEIGPGPGGLTRALLDSPAAHVTAVELDRRAIAALEELSAAYPGRLSIVEGDALRIDAA 60

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
                 +P RI+ANLPYN+GT LL  W+        +ESLTL+FQ+EV ERITA  ++ H
Sbjct: 61  TLL--PAPRRIVANLPYNVGTALLIGWLHRAE---LFESLTLMFQQEVAERITAAPDTEH 115

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEA 229
           YGRL+VL+ WR +  M   + P  F P PKV S ++H +PH   P P  + +L+++T  A
Sbjct: 116 YGRLAVLSQWRCQCRMTLRLPPGAFSPPPKVWSAIVHLVPHGTVPDPALMAALERVTAAA 175

Query: 230 FGKRRKTLRQSLKRLG-GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           FG+RRK LR SLK LG  E LL  AGIE   RAE LS+ +F R+  +L   +
Sbjct: 176 FGQRRKMLRSSLKTLGRPEALLEAAGIEATRRAETLSVAEFERLATLLLAQE 227


>gi|27151589|sp|Q92GV0|RSMA_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 301

 Score =  245 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 105/303 (34%), Positives = 152/303 (50%), Gaps = 38/303 (12%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113
                + VIE D +  P+L +I   +PN L II+ DALK++                   
Sbjct: 63  KNPESLTVIETDARCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSYDIVNSVGFAYKKR 121

Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                            +I   + II+NLPY+IGT L+  W+          S+TL+ QK
Sbjct: 122 EVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 178

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           EV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP  
Sbjct: 179 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPPS 238

Query: 217 CCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273
             L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI 
Sbjct: 239 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIYEVLTQLKINDNYRAENLAPQDYLRIA 298

Query: 274 NIL 276
            IL
Sbjct: 299 EIL 301


>gi|160943226|ref|ZP_02090462.1| hypothetical protein FAEPRAM212_00712 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445465|gb|EDP22468.1| hypothetical protein FAEPRAM212_00712 [Faecalibacterium prausnitzii
           M21/2]
          Length = 311

 Score =  245 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 133/287 (46%), Gaps = 16/287 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++ +   Y     K  GQNF+++  I  KI ++SG      VIEIG G G 
Sbjct: 29  MPELTDLSVIRALCEKYDFALSKGFGQNFIINPGIPTKIVDASGVDKRYGVIEIGPGIGV 88

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117
           LT+ L    A KV+ IE D++  P+L +  +   N  +++  D LKVD +          
Sbjct: 89  LTKELAKRAA-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM 146

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P+ + ANLPY I + ++   +         ESLT++ QKE  +R+ A   +     +S  
Sbjct: 147 PVAVCANLPYYITSPIVMKLLGDRLP---IESLTVMVQKEAADRLAAVPGTRASSAISCA 203

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   + +MF  +P  F+P+PKVTS V+       P     +      + + AFG+RRK
Sbjct: 204 VNYYATSKLMFTAAPGSFYPAPKVTSAVVRMDIRPTPAVQVEDEAGYFALVRAAFGQRRK 263

Query: 236 TLRQ------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           T         +L +      +  AG +  +R E L++EDF +I   L
Sbjct: 264 TAANAIAGGLNLPKEKVIAAIESAGFDARIRPEALTLEDFAKIQQAL 310


>gi|269836868|ref|YP_003319096.1| dimethyladenosine transferase [Sphaerobacter thermophilus DSM
           20745]
 gi|269786131|gb|ACZ38274.1| dimethyladenosine transferase [Sphaerobacter thermophilus DSM
           20745]
          Length = 293

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 17/273 (6%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            + + +L    + P K +GQNFL D  I+++IAE +       V+E+G G G LT+ L  
Sbjct: 18  PTFRDLLEEIGVRPSKALGQNFLHDTRIVQRIAEVADLGPDDLVVEVGPGLGILTRELAR 77

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             A  VI +E D +    L++        + I++ D L ++  +      P  ++ANLPY
Sbjct: 78  R-AGTVIAVELDTRLADHLRESLE--LENVRIVEGDILDLNLAELAG-KRPYHVVANLPY 133

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           ++   ++ + + +D  P     + ++ Q+EV ERI A+   P    L+V   +     + 
Sbjct: 134 SVAAAVIEHVLESDHRPG---RMVVMVQREVAERIVARP--PEMSVLAVAVQFYAVPRIA 188

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLK--- 242
           F + P  F P P+V S V+    + NP        +   + +  F +RRK L  +L    
Sbjct: 189 FRVGPGAFVPRPRVDSAVLRLDINPNPPLSGAERAAFFTLVRAGFSQRRKRLANALADAL 248

Query: 243 ---RLGGENLLHQAGIETNLRAENLSIEDFCRI 272
              +      L  AGI+ + RAE LS+E++  +
Sbjct: 249 DLPKSVVGERLTAAGIDPDRRAETLSVEEWLAM 281


>gi|206900710|ref|YP_002251201.1| dimethyladenosine transferase [Dictyoglomus thermophilum H-6-12]
 gi|206739813|gb|ACI18871.1| dimethyladenosine transferase [Dictyoglomus thermophilum H-6-12]
          Length = 279

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 150/279 (53%), Gaps = 13/279 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + ++S  +  IL    I  KK +GQNFL+D NILKKI ++       T++E+G G G 
Sbjct: 1   MNLTSRSELI-EILQKNNIFLKKSLGQNFLVDKNILKKIIDALEISKEDTILEVGCGVGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  L    +++VI +E D++F PIL+++   +PN  EII +D +K+D  K   ++ P +
Sbjct: 60  LTLELAKR-SKRVIGVEIDKRFKPILENLLKDYPNT-EIIFEDIMKIDLSKI--VTPPYK 115

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +  NLPY I    L  +       P+   + ++ QKE+ ER+T+   +  Y  LS+L   
Sbjct: 116 LAGNLPYYISGSFLGEYFQK---GPYASLMVIMLQKEMAERLTSSPGNKKYSPLSILLHI 172

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQ 239
                ++  + P  FFP+P+V S ++    +         E   K+ +E+F +RRK L  
Sbjct: 173 TYSYEVISKVPPSCFFPAPEVESVILRLKLNPKLDKIHNKELFFKLLKESFSQRRKFLLN 232

Query: 240 SLKRLGGE----NLLHQAGIETNLRAENLSIEDFCRITN 274
           +L+R   E     L  +  I++ +RAE+LS ED+  ++N
Sbjct: 233 NLQRAFPEIDWKTLFTELNIDSKIRAEDLSPEDYITLSN 271


>gi|326915765|ref|XP_003204183.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
           [Meleagris gallopavo]
          Length = 350

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 140/301 (46%), Gaps = 27/301 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++  I+  + +  +K + QNFLLDL +  KI   +G L    V E+G GPG +T+ +
Sbjct: 14  PLPTVGEIIKLFSLRAQKELSQNFLLDLRLTDKIVRQAGKLKNAYVCEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  G ++++++EKD +F P L+ +S   P ++ I+  D L    E+ F         +  
Sbjct: 74  LNAGVQQLLLVEKDTRFIPGLQMLSEAAPGKVRIVHGDILTYKMERAFPNHLKKNWEDEP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             I II NLP+N+ T L+  W+         +      +TL FQKEV ER+TA       
Sbjct: 134 PNIHIIGNLPFNVSTPLIIKWLENVSKRDGPFVYGRTQMTLTFQKEVAERLTANTGGKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS+++         F I    F P P V   V+HF P + P I    E ++K+ Q  F
Sbjct: 194 SRLSIMSQHLCTVENCFVIPGQAFVPKPDVDVAVVHFTPLVQPKIQQPFELVEKVVQSVF 253

Query: 231 GKRRKTL----------RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             RRK            R+ LK+   E L+  A ++  LR   L++  F  + N      
Sbjct: 254 QFRRKYCCRGVEILFPERERLKK--TEQLMMAADVDPTLRPVQLTMSHFRNLCNTYRKMC 311

Query: 281 D 281
           D
Sbjct: 312 D 312


>gi|313204313|ref|YP_004042970.1| dimethyladenosine transferase [Paludibacter propionicigenes WB4]
 gi|312443629|gb|ADQ79985.1| dimethyladenosine transferase [Paludibacter propionicigenes WB4]
          Length = 281

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 93/261 (35%), Positives = 130/261 (49%), Gaps = 10/261 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           ++  KKY+GQ+FL D+ I  +IA+S       +V+EIG G G LTQ LL      +  +E
Sbjct: 24  QVRAKKYLGQHFLKDMGIAGRIADSLILDGKTSVLEIGPGMGVLTQFLLQNPLIDLTAVE 83

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D++    L     QH  +L +I+ D LK+D +  F       +I N PYNI +++ F  
Sbjct: 84  LDKESVEYLH----QHYPQLNVIEADFLKLDLKTIF--PDKFCVIGNFPYNISSQIFFKM 137

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +      P    L  + QKEV ERI A   S  YG LSVL     K   +F +  HVF P
Sbjct: 138 LDNKDSIP---CLAGMIQKEVAERIAAPAGSKTYGILSVLMQAYYKIEYLFTVHEHVFDP 194

Query: 198 SPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI F  +  + I C  +  K + + +F +RRKTLR SLK L        A   
Sbjct: 195 PPKVKSAVIRFTRNEVSKIDCDEQLFKAVVKTSFNQRRKTLRNSLKPLVEAGHPMYADPI 254

Query: 257 TNLRAENLSIEDFCRITNILT 277
            +LR E L +  F  +T  + 
Sbjct: 255 FDLRPERLDVAAFIDLTKRVE 275


>gi|238650988|ref|YP_002916844.1| dimethyladenosine transferase [Rickettsia peacockii str. Rustic]
 gi|259494257|sp|C4K2J5|RSMA_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|238625086|gb|ACR47792.1| dimethyladenosine transferase [Rickettsia peacockii str. Rustic]
          Length = 301

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 105/303 (34%), Positives = 153/303 (50%), Gaps = 38/303 (12%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113
                + VIE D++  P+L +I   +PN L II+ DALK++                   
Sbjct: 63  KNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121

Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                             I   + II+NLPY+IGT L+  W+          S+TL+ QK
Sbjct: 122 EAKPITNRRANDIGESKAIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 178

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           EV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP+ 
Sbjct: 179 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPLS 238

Query: 217 CCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273
             L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI 
Sbjct: 239 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRIA 298

Query: 274 NIL 276
            IL
Sbjct: 299 EIL 301


>gi|118595197|ref|ZP_01552544.1| dimethyladenosine transferase [Methylophilales bacterium HTCC2181]
 gi|118440975|gb|EAV47602.1| dimethyladenosine transferase [Methylophilales bacterium HTCC2181]
          Length = 259

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/264 (32%), Positives = 131/264 (49%), Gaps = 11/264 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D +I+K+I       +   ++EIG G G LT+ +L      + VIE 
Sbjct: 2   IKAKKKFGQNFLTDTSIIKEIINHINPKEKDRILEIGPGMGALTKPIL-SKISHIDVIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D      L    +   +++ I+QDD L +  E   +     RII NLPY I T ++   I
Sbjct: 61  DSDMVAHLNKTVA--DSQISIMQDDILLMSKEALRSFD---RIIGNLPYYISTEIMIKMI 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    +    +FQ+EV ERI A   +  YGRLSVL  +   A ++  I    F P+
Sbjct: 116 ---DLIDSKKDFHFMFQREVAERIAAVPGTKCYGRLSVLIQYFFTAEILLHIPADAFTPA 172

Query: 199 PKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S+ +  IP    +     +++ KK+ + AF ++RKT++ + K +  E   +  GI 
Sbjct: 173 PKIQSSFVRLIPKKDFDLTFKDMDNFKKVIKLAFHQKRKTIKNNFKNILDEKDFNSLGIN 232

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
              RAENLSI  F  I N +  N+
Sbjct: 233 PQDRAENLSISTFINIENYMYGNK 256


>gi|117927388|ref|YP_871939.1| dimethyladenosine transferase [Acidothermus cellulolyticus 11B]
 gi|166221640|sp|A0LR93|RSMA_ACIC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|117647851|gb|ABK51953.1| dimethyladenosine transferase [Acidothermus cellulolyticus 11B]
          Length = 290

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     + P+K  GQ+F++D  +L+KIA  +        +EIG G G+LT + L
Sbjct: 16  AADIRELARSAGVRPRKTFGQHFVVDPGVLRKIARYAELSSEDIALEIGPGFGSLTLV-L 74

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
               R+++ +E D+    +L    +       +RL ++  D L++          P  ++
Sbjct: 75  LPLVRRLLAVEIDRVLAAVLPETIRRRCPAFADRLVVVHGDVLRLTT----LPDDPTVLV 130

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    +       +         ++ Q+EV ER+ A   SP YG  S+   W  
Sbjct: 131 ANLPYNVAVPAVLRVFERFS---TVTRTVIMVQREVAERLCADPGSPAYGAPSIKLRWYG 187

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241
           +A ++  +S  VF+P P+V S V+       P+P     ++  +   AF +RRK LR++L
Sbjct: 188 RARIVGSVSADVFWPRPQVESAVVRIDRQPPPVPGVDRAAVFAVIDAAFAQRRKMLRRAL 247

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E  +  AG+    R E L++ DF R+   
Sbjct: 248 SGWAGSAQAAEERILAAGLRPTDRGEALTLADFIRLAQA 286


>gi|257062209|ref|YP_003140097.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802]
 gi|256592375|gb|ACV03262.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802]
          Length = 272

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 129/269 (47%), Gaps = 13/269 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L     L +I E++       V+EIG G G LT+ LL L  + ++ +E D
Sbjct: 3   QPRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPL-VQSIVAVELD 61

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135
           +     L        N   +++ D L +D     E+F       +++AN+PYNI + +L 
Sbjct: 62  RDLCYRLAKSFGNF-NHFLLLEGDILSLDLTTQLEQFPQFQPINKVVANIPYNITSPILE 120

Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             + +   P  P +E + LL QKEV +RI A   S  YG LSV T +  +   + ++   
Sbjct: 121 KLLGSIAHPQHPSYELIVLLMQKEVAQRIVASPQSKAYGALSVRTQYLAQCDYICEVPSK 180

Query: 194 VFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248
            F P PKV S VI   P     P    + L ++ +  F  RRK L  +LK +   +    
Sbjct: 181 AFDPPPKVDSAVIRLTPRSLETPAINPQKLDQLVKLGFANRRKMLHNNLKSIIDRDHLTL 240

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           LL Q  I   +RAE LS+E +   +N+L 
Sbjct: 241 LLDQLQINPQVRAEELSLEQWIMFSNLLE 269


>gi|330998260|ref|ZP_08322085.1| dimethyladenosine transferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329568649|gb|EGG50450.1| dimethyladenosine transferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 283

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 93/275 (33%), Positives = 132/275 (48%), Gaps = 24/275 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL I + IA++  +  GI V+E+G G G +TQ L+  G R V V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKIAQDIADTVDACPGIPVLEVGPGMGVMTQFLVGKG-RPVKVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L+    Q      II+DD LK+  E+ F    P  +  N PYNI +++ F  +
Sbjct: 63  DFESVAYLRANYPQLEEN--IIEDDFLKMHLERTFG-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL         +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLIQAWYSVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE---------- 247
           PKV S VI    +    + C     K++ +  F +RRK LR S++ +  +          
Sbjct: 177 PKVKSAVIRMTRNSTTDLGCNERLFKQVVKTTFNQRRKVLRNSIRPVLADADHKARQEGR 236

Query: 248 -----NLLHQAGIETNLRAENLSIEDFCRITNILT 277
                     A I    R E LS+ DF  +TN +T
Sbjct: 237 LPKDHAEFLSAEI-FGRRPEQLSVADFINLTNAIT 270


>gi|116074644|ref|ZP_01471905.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. RS9916]
 gi|116067866|gb|EAU73619.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. RS9916]
          Length = 298

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 120/275 (43%), Gaps = 11/275 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++L D  +L  I E+SG      V+E+G G G LT+ LL   A  V  +E
Sbjct: 26  GHTARKRFGQHWLRDERVLDHILEASGLQADDRVLEVGPGRGALTERLLRSPAAAVHAVE 85

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+D       R  + + D L V      +     +++AN+PYNI   L+   
Sbjct: 86  LDRDLVAGLRDRFGS-DGRFSLREGDVLDVPL-TLPDEGLATKVVANIPYNITGPLMERL 143

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           I     P  P ++ L LL QKEV ERI A+     +  LSV      + + +  + P  F
Sbjct: 144 IGRLDRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLAQCSTVCPVPPRCF 203

Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251
            P PKV S VI   P      P P     ++ + ++AF  RRK LR +L  L     L  
Sbjct: 204 QPPPKVQSEVIRLDPLPMQQRPEPALARRVESLLKQAFLARRKMLRNTLAGLCPPEQLQM 263

Query: 252 ---QAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
               AGI+   R + ++   +  +   L      A
Sbjct: 264 LAAAAGIDLQQRPQEVAPAAWVELARGLNQADSAA 298


>gi|311233807|gb|ADP86661.1| dimethyladenosine transferase [Desulfovibrio vulgaris RCH1]
          Length = 300

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 89/262 (33%), Positives = 127/262 (48%), Gaps = 8/262 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK +GQNFL D NI  +IA          VIEIG GPG LT+ +   G  ++ ++EKD
Sbjct: 38  RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 97

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             +    +          +++  DAL   +E+  + + P ++I NLPYN+ + L+++  S
Sbjct: 98  HHWAREHRLHPLAGTPEAQVVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMWDICS 156

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     + + QKEVGERI A   S  YG LSV     TK    F + PHVF P P
Sbjct: 157 RA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVFTPRP 213

Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255
           KV S V+ F P    P     + L ++ +  F +RRK L+  L+   G     LL   GI
Sbjct: 214 KVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLAGLGI 273

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +   R E LS E F  +   + 
Sbjct: 274 DPAARPETLSPERFIALGEAVA 295


>gi|225437553|ref|XP_002276165.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 350

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 14/242 (5%)

Query: 15  SHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
            HY   +   K  GQ+ L +  ++  I E SG      ++EIG G GNLT+ LL  G + 
Sbjct: 19  KHYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KS 77

Query: 73  VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           VI +E D +    L+      P  NRL++IQ D L+ D   F         +AN+PY I 
Sbjct: 78  VIAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLPYF------DICVANIPYQIS 131

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + L F  ++     P +    ++FQ+E   R+ AQ     Y RLSV T    + + +  +
Sbjct: 132 SPLTFKLLAHR---PVFRCAVIMFQREFAMRLVAQPGDNLYCRLSVNTQLLARVSHLLKV 188

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             + F P PKV S+V+   P     P   +    + +  F ++ KTL    ++    +LL
Sbjct: 189 GKNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTLGSIFRQKSVLSLL 248

Query: 251 HQ 252
            +
Sbjct: 249 EK 250


>gi|186685005|ref|YP_001868201.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102]
 gi|226732604|sp|B2J0A6|RSMA_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|186467457|gb|ACC83258.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102]
          Length = 286

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 19/276 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSL------DGITVIEIGAGPGNLTQMLLTLGARK 72
           I P+K   Q++L     L  I +++          G  ++EIG G G LT+ LL L  + 
Sbjct: 2   IRPRKVFAQHWLKSEKALDAIIKAAECTESDRSPKGDCILEIGPGTGILTRRLLPL-VQS 60

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYN 128
           +I +E D+    +L     +  N L ++Q D L +D       F N   P +++AN+PYN
Sbjct: 61  LIAVEIDRDLCQLLSKQLGKTENFL-LLQGDFLTLDLPSYLVAFPNFQKPNKVVANIPYN 119

Query: 129 IGTRLLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           I   ++   +   A+  P  ++S+ LL QKEV ER+ A+  S  +G LSV   +  +  +
Sbjct: 120 ITGPIIEKLLGTIANPNPEPFDSIVLLVQKEVAERLYAKPGSKTFGALSVRVQYLAECEL 179

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLG 245
           +  +    F P+PKV S V+   P    IP      L+   +  FG +RK LR +L+ + 
Sbjct: 180 ICTVPASAFHPAPKVDSAVVRLRPRKIEIPALNPRQLETFLKLGFGAKRKMLRNNLQSVI 239

Query: 246 GEN----LLHQAGIETNLRAENLSIEDFCRITNILT 277
             +    LL Q  I    RAE++S++ +  + N L 
Sbjct: 240 ERDRLSHLLEQLKINPQARAEDISVQQWVILANELA 275


>gi|62900547|sp|Q72B41|RSMA_DESVH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|46449624|gb|AAS96274.1| dimethyladenosine transferase [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 266

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/262 (33%), Positives = 127/262 (48%), Gaps = 8/262 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK +GQNFL D NI  +IA          VIEIG GPG LT+ +   G  ++ ++EKD
Sbjct: 4   RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 63

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             +    +          +++  DAL   +E+  + + P ++I NLPYN+ + L+++  S
Sbjct: 64  HHWAREHRLHPLAGTPEAQVVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMWDICS 122

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     + + QKEVGERI A   S  YG LSV     TK    F + PHVF P P
Sbjct: 123 RA---PGLLRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVFTPRP 179

Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255
           KV S V+ F P    P     + L ++ +  F +RRK L+  L+   G     LL   GI
Sbjct: 180 KVDSAVLAFTPRTDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHVGGDASALLAGLGI 239

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +   R E LS E F  +   + 
Sbjct: 240 DPAARPETLSPERFIALGEAVA 261


>gi|300728350|ref|ZP_07061714.1| dimethyladenosine transferase [Prevotella bryantii B14]
 gi|299774386|gb|EFI71014.1| dimethyladenosine transferase [Prevotella bryantii B14]
          Length = 270

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 133/263 (50%), Gaps = 15/263 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DLNI K IA++  +   I V+E+G G G LTQ L     RKV V+E 
Sbjct: 4   VKPKKNLGQHFLTDLNIAKAIADTVDACPDIPVLEVGPGMGVLTQYL-KTKDRKVRVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +  S      +I+ +D L++D  K F+   P  +  N PY+I +++ F  +
Sbjct: 63  DSESVAFLHENFSFMSE--DILGEDFLRMDLNKVFD-GQPFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  RI +Q  +  YG LSVL         +F +  +VF P 
Sbjct: 120 DNKELIP---CCTGMIQREVALRIASQPGNKAYGILSVLIQAWYNVEYLFTVDENVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252
           PKV S VI    + +  + C  +  K++ +  F +RRK LR S+K++       E  +  
Sbjct: 177 PKVKSAVIRMTRNDVMDLGCDEKLFKRLVKTVFNQRRKMLRVSIKQMFPGVKASEEFMT- 235

Query: 253 AGIETNLRAENLSIEDFCRITNI 275
            G     R E LSI+ F  +TN+
Sbjct: 236 -GELMTKRPEQLSIQQFIELTNL 257


>gi|255533693|ref|YP_003094065.1| dimethyladenosine transferase [Pedobacter heparinus DSM 2366]
 gi|255346677|gb|ACU06003.1| dimethyladenosine transferase [Pedobacter heparinus DSM 2366]
          Length = 260

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 127/261 (48%), Gaps = 10/261 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  KK++GQ+FL D NI  KI      +     V+E+G G G L+ +LL     +  +I+
Sbjct: 4   VRAKKHLGQHFLTDKNIAAKIVNGLVHTDKYKQVLEVGPGMGILSDLLLERKDLETYLID 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D + +  L+    Q  +RL  I  D L ++    F       II N PYNI +++LF  
Sbjct: 64  IDVESYHFLQQKYPQLGSRL--INGDFLALNLSDIF--KDKYAIIGNFPYNISSQILFKI 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +   +       +  +FQKEV ER  +++ +  YG LSVL         +F + P  F P
Sbjct: 120 LENRS---SVVEMVGMFQKEVAERCASKEGTKDYGILSVLIQAYYHIEYLFTVKPGTFNP 176

Query: 198 SPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    +    +PC  +   +  +  F +RRKTLR +L  +  ++ + +    
Sbjct: 177 PPKVNSGVIRLSRNAVETLPCDEKLFWRTVKAGFNQRRKTLRNALSGIIPKDKMDEHPF- 235

Query: 257 TNLRAENLSIEDFCRITNILT 277
            + RAE LS+ DF  +T+ L 
Sbjct: 236 FDKRAEQLSVNDFIVLTSHLA 256


>gi|218780962|ref|YP_002432280.1| dimethyladenosine transferase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762346|gb|ACL04812.1| dimethyladenosine transferase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 289

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 141/281 (50%), Gaps = 13/281 (4%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           NN++ S K +L+ + + PKK  GQNFL D    +   E +      +V+EIG G G LT 
Sbjct: 7   NNRALSAKALLAAFDLKPKKAKGQNFLADPATARACVERADLSPDDSVLEIGPGLGALTI 66

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRII 122
             ++  A++VI +E D     +L++       + + I+  D LK D       +    ++
Sbjct: 67  P-MSRKAKQVIAVEWDTNLAKVLENQIESLGLSNITILNQDILKTDIRGIAERAGGNMVV 125

Query: 123 A-NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           A NLPYNI +++L   I        ++   L+FQ E+ +RI A+     YGR++VL  + 
Sbjct: 126 AANLPYNISSQVLIRLIQNRD---LFKKAALMFQTELAQRIMAEPGGKDYGRITVLAQYS 182

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           ++  +++ + P  F+P P+V S V+ F+          + L  + + AF KRRKTL+ +L
Sbjct: 183 SRIRVLYSLGPAHFYPKPQVDSQVLEFLFKEPDPSVNEDILFAVVKAAFAKRRKTLKNAL 242

Query: 242 KRL-------GGENLLHQAGIETNLRAENLSIEDFCRITNI 275
                       +  L +AGI+   RAE LS+++F  +   
Sbjct: 243 SNSELPFSGEQAQAALDEAGIDPKRRAETLSVDEFVALAKA 283


>gi|307566374|ref|ZP_07628813.1| dimethyladenosine transferase [Prevotella amnii CRIS 21A-A]
 gi|307344951|gb|EFN90349.1| dimethyladenosine transferase [Prevotella amnii CRIS 21A-A]
          Length = 267

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/265 (32%), Positives = 132/265 (49%), Gaps = 13/265 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL+I K+IA++  S   I ++EIG G G LTQ L+    R++ V+E 
Sbjct: 4   VKPKKNLGQHFLTDLSIAKRIADTVDSYPNIPILEIGPGMGVLTQYLVE-KHREIKVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L D       R  II  D LK+D +  F       +  N PY+I +++ F  +
Sbjct: 63  DAESVKYLNDRFPNL--RENIIGKDFLKMDLKNIF-YGKQFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+TA+  +  YG LS+L         +F +   VF P 
Sbjct: 120 DYKDLIP---CCTGMIQREVAIRMTAKPCNKTYGILSILIQAWYDVEYLFTVDETVFNPP 176

Query: 199 PKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLHQA 253
           PKV S VI      +  + C     K++ +  F +RRK LR SLK++        +  + 
Sbjct: 177 PKVKSAVIRMTRNKVTSLGCDENLFKRLVKTVFNQRRKMLRVSLKQIIKSYSTSEVFFKQ 236

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
            I    R E LSI+ F  +TN++++
Sbjct: 237 DI-MTKRPEQLSIKQFVELTNMVSE 260


>gi|257894901|ref|ZP_05674554.1| dimethyladenosine transferase [Enterococcus faecium 1,231,408]
 gi|257831280|gb|EEV57887.1| dimethyladenosine transferase [Enterococcus faecium 1,231,408]
          Length = 241

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 130/244 (53%), Gaps = 20/244 (8%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-- 108
           +IE+G G G LT+ L    A++V+  E D +  P+L D    + N + I+  D LK D  
Sbjct: 1   MIEVGPGIGALTEQLAKH-AKQVVAFEIDDRLIPVLADTMQPYDN-VTIVHQDILKTDLS 58

Query: 109 --FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
               + F+   P++++ANLPY I T ++ +++ +D      + L ++ QKEV +RI+A+ 
Sbjct: 59  TAVRETFHEELPLKVVANLPYYITTPIMMHFLESDL---VVDELVVMMQKEVADRISAEP 115

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKK 224
            +  YG LS+   +  +A++ F +   VF P P V S ++       P       ++  +
Sbjct: 116 GTKAYGSLSIAVQYYMEASLAFIVPKTVFVPQPNVDSAILKLTRRDIPAVEVTDEKAFFR 175

Query: 225 ITQEAFGKRRKTLRQSLKRLGGENL---------LHQAGIETNLRAENLSIEDFCRITNI 275
           +T+ AF +RRKTL  +L+   G++          L  AGI+   R E LS+++F  ++N 
Sbjct: 176 LTKAAFQQRRKTLWNNLQHSYGKDDQTKAWLAKSLETAGIDPKRRGETLSLQEFAALSNA 235

Query: 276 LTDN 279
           +++N
Sbjct: 236 MSEN 239


>gi|315187092|gb|EFU20849.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6578]
          Length = 280

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 139/281 (49%), Gaps = 17/281 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    ++ +++ + +   K  GQ+FL+  ++L++I  +     G  V EIG G G 
Sbjct: 1   MGETSYPIRMRELMARHGLRALKRFGQHFLVRDDVLRRIVRALDLHPGEQVWEIGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  LL  G  +V+  E D+ F  IL++   + P  L I++ D  +  +   +    P R
Sbjct: 61  LTAHLLDEGV-EVVGFEIDRGFVSILREEFGEAP--LTIVEGDV-RDTWRTVYQRRVPHR 116

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ NLPYN+ T ++ +++      P       + Q+EV ER+ A   SP YG LSV+ G 
Sbjct: 117 VVGNLPYNVATSIILDFLEGGLVVPQ----VFMVQREVAERMAASVGSPAYGALSVIVGT 172

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQ 239
             +  ++F + P  F+P PKV S+V+   P  +P+    + S        F  RRK L+ 
Sbjct: 173 FYRCELLFHVPPTAFYPRPKVWSSVLRLHPVTSPVSQEDIPSFLSFVWNLFRYRRKMLKN 232

Query: 240 SLKR--LGGE------NLLHQAGIETNLRAENLSIEDFCRI 272
            L R  LG E      +LL + GI+  LRAE L ++    +
Sbjct: 233 VLLRSPLGAEGVEEVGSLLERVGIDPTLRAEQLPLDRIHAL 273


>gi|255348718|ref|ZP_05380725.1| dimethyladenosine transferase [Chlamydia trachomatis 70]
 gi|255503258|ref|ZP_05381648.1| dimethyladenosine transferase [Chlamydia trachomatis 70s]
          Length = 277

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 13/280 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    L + L       KK + QNFL+D NIL+KI  ++    G  V+EIG G G L+++
Sbjct: 4   SSIEQLTSFLRSVNGRVKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEV 63

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL+ GA  VI +EKD  F   L    SQ P  +EI       +   +        RI+AN
Sbjct: 64  LLSQGAN-VIALEKDPMFEESL----SQLPMDIEITDACEYPLTSLEDKGWKGKGRIVAN 118

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY+I T LL  +      P  W+++T++ Q EV  RITA+     YG L+V   +    
Sbjct: 119 LPYHITTPLLTKFFLE--CPYRWKTVTVMIQDEVARRITAKPGDKDYGSLTVFLSFFADV 176

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK 242
              F +SP+ F+P P V S V+H   H         +E    +T+ AFG+RRK L  SLK
Sbjct: 177 QYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFTLTRAAFGQRRKLLANSLK 236

Query: 243 RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L  ++    +L Q G     R E + +E++ +I ++L D
Sbjct: 237 NLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD 276


>gi|195326894|ref|XP_002030159.1| GM25292 [Drosophila sechellia]
 gi|194119102|gb|EDW41145.1| GM25292 [Drosophila sechellia]
          Length = 414

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 144/293 (49%), Gaps = 19/293 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64
              +++ ++  Y++  +K + QNFL+D  +  KI +S+G       V+E+G GPG +T+ 
Sbjct: 101 PMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPKDLVLEVGPGPGGITRS 160

Query: 65  LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIR 120
           +L    ++++++EKD +F     +LK+ +S    + +I  DD L+ + E+   + S  I 
Sbjct: 161 ILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIH 220

Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +I NLP+ I TRLL NW+         +      +TL FQ+EV ERI A        RLS
Sbjct: 221 LIGNLPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLS 280

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234
           V++   T+  M F I    F P P+V   V+  IP   P        ++++ +  F  R+
Sbjct: 281 VMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRHIFSMRQ 340

Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           K  R+    L            L  +A ++  LR   L++E   R+  + +++
Sbjct: 341 KYCRRGYGTLLPPEDREEVAQKLFERAEVQDTLRPFELTVEQCLRLAEVYSEH 393


>gi|108758752|ref|YP_630281.1| dimethyladenosine transferase [Myxococcus xanthus DK 1622]
 gi|118600879|sp|Q1DAP2|RSMA_MYXXD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|108462632|gb|ABF87817.1| dimethyladenosine transferase [Myxococcus xanthus DK 1622]
          Length = 283

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 127/277 (45%), Gaps = 17/277 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S + IL  + +  K   GQNFL D + L+ IA++        V+E+G G G+LT+ L   
Sbjct: 3   SPRDILKRHGLRAKYSWGQNFLGDEDALEAIADALNLRADEPVVELGPGLGHLTRFLAAT 62

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GAR V  +E+D+    +L+      P  + ++  +A  VDF +       + +  NLPY+
Sbjct: 63  GAR-VTAVERDRDMVMVLEK--EAIPG-VRVVSGNAATVDFAQVAGAPD-VAVAGNLPYH 117

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           + + +LF  +                QKEV ER+ A+  +  YG L+VL G    A  + 
Sbjct: 118 LTSPILFRVLEQRAH---VSRAVFTLQKEVVERLAAEPGNRDYGLLTVLLGMHYDAENVL 174

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKR--- 243
            +    F P PKV S V+      +P           ++ + +F  RRKTL  S+K    
Sbjct: 175 TLEAWRFHPPPKVDSAVLRLTRRKSPRAPIIDEARFTRVVKASFAHRRKTLINSIKSDPT 234

Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276
           LG        L  AG++   RAE L+ E+F  I   L
Sbjct: 235 LGTTETLIAALEAAGVDPQRRAETLTPEEFAAIERAL 271


>gi|308272694|emb|CBX29298.1| Dimethyladenosine transferase [uncultured Desulfobacterium sp.]
          Length = 304

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 144/282 (51%), Gaps = 15/282 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S +T+LS + + PKK  GQNFL D +  + I   S  L    ++E+G+G G LT  L   
Sbjct: 25  SPRTLLSAWNLSPKKQYGQNFLADPSTAEMIIFRSKILPEDIILEVGSGLGALTIPLAA- 83

Query: 69  GARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLP 126
            A +V  +EKD     +L+ +I S+  + +EI+ ++ LK+D           I +  NLP
Sbjct: 84  AAHQVYAVEKDPNLVQVLQNEILSKSIDNVEILNENILKLDINGLAAKHDRKIIVFGNLP 143

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNI +++L   I   +         L+FQKE+ +RI  +  S  YGR+SV+  +      
Sbjct: 144 YNISSQILIKLIKERSC---VSRAILMFQKELAQRICGKPGSKDYGRISVMLKYCADTAK 200

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL 244
           + D+   +F+P PK+ S ++      +      +      + + AFGKRRKTL+ SL   
Sbjct: 201 IADVKASLFYPKPKIDSEILEIRFKEHQDVVADDETFFFSVIKAAFGKRRKTLKNSLSAS 260

Query: 245 -------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                    E+ L+ AGI+ + R+E L+IE+F ++ N +  +
Sbjct: 261 ELGISAQNAESALNSAGIDPSRRSETLNIEEFVKLGNTVYKS 302


>gi|120602408|ref|YP_966808.1| dimethyladenosine transferase [Desulfovibrio vulgaris DP4]
 gi|166221661|sp|A1VD65|RSMA_DESVV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120562637|gb|ABM28381.1| dimethyladenosine transferase [Desulfovibrio vulgaris DP4]
          Length = 266

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/262 (33%), Positives = 126/262 (48%), Gaps = 8/262 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK +GQNFL D NI  +IA          VIEIG GPG LT+ +   G  ++ ++EKD
Sbjct: 4   RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 63

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             +               +++  DAL   +E+  + + P ++I NLPYN+ + L+++  S
Sbjct: 64  HHWAREHHLHPLAGTPEAQVVLTDALLFPWERL-DAAHPWKVIGNLPYNVASPLMWDICS 122

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P     + + QKEVGERI A   S  YG LSV     TK    F + PHVF P P
Sbjct: 123 RA---PGLVRASFMIQKEVGERIVAAPGSRQYGALSVWLQCFTKPEWCFVVPPHVFTPRP 179

Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255
           KV S V+ F P    P     + L  + +  F +RRK L+  L+   G     LL + GI
Sbjct: 180 KVDSAVLAFTPRTDRPDAVQSKRLAHVLRLCFQQRRKQLQGILRPHVGGDASALLAELGI 239

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +   R E LS E F  +   + 
Sbjct: 240 DPAARPETLSPERFIALGEAVA 261


>gi|157828876|ref|YP_001495118.1| dimethyladenosine transferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|166221698|sp|A8GT85|RSMA_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157801357|gb|ABV76610.1| dimethyladenosine transferase [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 301

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 153/303 (50%), Gaps = 38/303 (12%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + +++ P +  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHAALHQVNPLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113
                + VIE D++  P+L +I   +PN L II+ DALK++                   
Sbjct: 63  KNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121

Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                             I   + II+NLPY+IGT L+  W+          S+TL+ QK
Sbjct: 122 EAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 178

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           EV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  NP+ 
Sbjct: 179 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENPLS 238

Query: 217 CCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273
             L   +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI 
Sbjct: 239 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLNINDNYRAENLAPQDYLRIA 298

Query: 274 NIL 276
            IL
Sbjct: 299 EIL 301


>gi|126311223|ref|XP_001381331.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 344

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 137/299 (45%), Gaps = 23/299 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++  I+  + +  +K + QNFLLDL +  KI   +G L    V E+G GPG  T+ +
Sbjct: 14  PLPTVGEIIKLFGLRAQKQLSQNFLLDLRLTDKIVRKTGDLKNAHVYEVGPGPGAFTRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L      ++V+EKD +F P L+ +S   P +L I+  D L    E+ F         +  
Sbjct: 74  LNAQVADLLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVERMFPEHLKRRWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+         +      +TL FQKEV ER+TA   +   
Sbjct: 134 PNVYIIGNLPFSVSTPLIIKWLENISKRDGPFVYGRTQMTLTFQKEVAERLTAGTGNKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++  +  K    F I    F P P+V   V+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSIMAQYLCKVDNSFIIPGRAFVPKPEVDVGVVHFTPLVQPQINQPFKLVEKVVQSTF 253

Query: 231 GKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             RRK     +  L          E +L  A ++  LR   LSI  F  + ++     D
Sbjct: 254 QFRRKYCHHGIGILFPQAERSKNTEKMLMLADVDPTLRPSQLSILHFKNLCDVYRKMCD 312


>gi|55980052|ref|YP_143349.1| dimethyladenosine transferase [Thermus thermophilus HB8]
 gi|62900482|sp|Q5SM60|RSMA_THET8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226192685|pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
           (Ksga) In Complex With Adenosine In Space Group P212121
 gi|226192686|pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
           Methyltransferase (Ksga) In Space Group P43212
 gi|226192687|pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
           Methyltransferase (Ksga) In Space Group P43212
 gi|226192688|pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
           Methyltransferase (Ksga) In Space Group P43212
 gi|226192689|pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
           (Ksga) In Complex With 5'-Methylthioadenosine In Space
           Group P212121
 gi|226192690|pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
           (Ksga) In Complex With 5'-Methylthioadenosine In Space
           Group P212121
 gi|226192691|pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
           (Ksga) In Complex With 5'-Methylthioadenosine In Space
           Group P212121
 gi|226192692|pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
           (Ksga) In Complex With 5'-Methylthioadenosine In Space
           Group P212121
 gi|55771465|dbj|BAD69906.1| dimethyladenosine transferase [Thermus thermophilus HB8]
          Length = 271

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 142/282 (50%), Gaps = 19/282 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+      S++ +L  + +   K  GQNFL+    L++I E++    G  V E+G G G 
Sbjct: 1   MSKLASPQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GA +V  IEKD +  P+L++  S  P  + ++  DAL   +E+    S    
Sbjct: 60  LTRALLEAGA-EVTAIEKDLRLRPVLEETLSGLP--VRLVFQDALLYPWEEVPQGS---L 113

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY+I T L+   +        +  L  L QKEV ER+TA+  +P YG L++    
Sbjct: 114 LVANLPYHIATPLVTRLLKTGR----FARLVFLVQKEVAERMTARPKTPAYGVLTLRVAH 169

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
              A  +FD+ P  FFP PKV S+++   P           L ++ + AFGKRRKTL  +
Sbjct: 170 HAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGA---LDDPGLFRLVEAAFGKRRKTLLNA 226

Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L   G      E  L   G+   +RAE L +E F R+   L 
Sbjct: 227 LAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268


>gi|238062573|ref|ZP_04607282.1| dimethyladenosine transferase [Micromonospora sp. ATCC 39149]
 gi|237884384|gb|EEP73212.1| dimethyladenosine transferase [Micromonospora sp. ATCC 39149]
          Length = 291

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/277 (27%), Positives = 129/277 (46%), Gaps = 15/277 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K +GQNF+ D N +++I  ++G       +E+G G G+L  + L
Sbjct: 9   PAEIRDLAARLGVNPTKKLGQNFVHDPNTVRRIVAAAGLAADDVALEVGPGLGSL-TLAL 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A     +E D      L   +++H      RL + + DAL++D  +     +P  ++
Sbjct: 68  LPAAAHTHAVEIDPTLAAALPQTAARHAGPYAGRLTVHRADALRIDPAELA-APAPTALV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + ++A    P      ++ QKEV +R+ A   S  YG  SV   W  
Sbjct: 127 ANLPYNVAVPVVLHLLAA---LPSLRHGLVMVQKEVADRLVAGPGSKVYGIPSVKLAWHA 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLR--- 238
            +     + P+VF+P P V S ++ F     P P    E +  +   AF +RRKTLR   
Sbjct: 184 HSRAAGRVPPNVFWPVPNVDSGLVAFTRREPPRPEVPRERVFAVVDAAFAQRRKTLRAAL 243

Query: 239 --QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
              +         L  AG++   R E+L++E F  I 
Sbjct: 244 AGWAGGADRAAAALTAAGVDPGARGESLTVEQFAAIA 280


>gi|332653433|ref|ZP_08419178.1| dimethyladenosine transferase [Ruminococcaceae bacterium D16]
 gi|332518579|gb|EGJ48182.1| dimethyladenosine transferase [Ruminococcaceae bacterium D16]
          Length = 289

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 106/293 (36%), Positives = 154/293 (52%), Gaps = 21/293 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N  + +K +LS +     K MGQNFL++  + + IA++SG+  G+ V+E+G G G 
Sbjct: 1   MDLCN-INDIKALLSRHGFRFSKSMGQNFLIEDWVPRDIADASGAAPGVGVVEVGPGIGP 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---- 116
           LT+ L +L A KV+ IE D+   PIL +  S +PN  EI   D LK D     +      
Sbjct: 60  LTREL-SLRADKVVSIELDRSLLPILAETLSDYPNA-EIFPGDVLKTDLPALVSEKLAGL 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           SPI   ANLPYNI T  +   I A  +     S+T++ Q+EV  RI A   +  YG  SV
Sbjct: 118 SPIAC-ANLPYNITTPAITALIEAGCFG----SITVMIQREVARRICAAPGTGDYGAFSV 172

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRK 235
              + TK  ++FD+ P  F P+PKVTS+V+  +P   P      +   ++ + AF +RRK
Sbjct: 173 YCQYHTKPEILFDVPPSCFIPAPKVTSSVLRMVPQTPPAEVDDPKHFFQVVRAAFAQRRK 232

Query: 236 TLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           TL  SL    G         N + Q G+  N+R E LSI DF  ++  L   +
Sbjct: 233 TLLNSLSSALGGTYQKEAIANAIAQCGLAENIRGERLSISDFAALSKALRRQE 285


>gi|295105199|emb|CBL02743.1| dimethyladenosine transferase [Faecalibacterium prausnitzii SL3/3]
          Length = 283

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 133/287 (46%), Gaps = 16/287 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++ +   Y     K  GQNF+++  I  KI ++SG      VIEIG G G 
Sbjct: 1   MPELTDLSVIRALCEKYDFALSKGFGQNFIINPGIPTKIVDASGVDKRYGVIEIGPGIGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117
           LT+ L    A KV+ IE D++  P+L +  +   N  +++  D LKVD +          
Sbjct: 61  LTKELAKRAA-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P+ + ANLPY I + ++   +         ESLT++ QKE  +R+ A   +     +S  
Sbjct: 119 PVAVCANLPYYITSPIVMKLLGDRLP---IESLTVMVQKEAADRLAAVPGTRASSAISCA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +   + +MF  +P  F+P+PKVTS V+       P     +      + + AFG+RRK
Sbjct: 176 VNYYATSKLMFTAAPGSFYPAPKVTSAVVRMDIRPTPAVQVEDEAGYFALVRAAFGQRRK 235

Query: 236 TLRQ------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           T         +L +      +  AG +  +R E L++EDF +I   L
Sbjct: 236 TAANAIAGGLNLPKEKVIAAIESAGFDARIRPEALTLEDFAKIQQAL 282


>gi|218458347|ref|ZP_03498438.1| dimethyladenosine transferase [Rhizobium etli Kim 5]
          Length = 202

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 108/203 (53%), Positives = 144/203 (70%), Gaps = 1/203 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G L+G TV E+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGGLEGTTVFEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGA+KVI IE+D +  P L +I+  +P RLE+I+ DALK DFE       P++
Sbjct: 61  LTRAILALGAKKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAPEG-PVK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL VL+GW
Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVAGEDDDHYGRLGVLSGW 179

Query: 181 RTKATMMFDISPHVFFPSPKVTS 203
           RT+A M FD+ P    P PKVTS
Sbjct: 180 RTEARMAFDVPPRALTPPPKVTS 202


>gi|217967874|ref|YP_002353380.1| dimethyladenosine transferase [Dictyoglomus turgidum DSM 6724]
 gi|217336973|gb|ACK42766.1| dimethyladenosine transferase [Dictyoglomus turgidum DSM 6724]
          Length = 279

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 147/279 (52%), Gaps = 13/279 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +KS  +  IL    I  KK +GQNFL+D NILKKI ++        ++E+G G G 
Sbjct: 1   MDLTSKSKLI-EILRRNNIFLKKSLGQNFLIDKNILKKIIDALEISKEDNILEVGCGVGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  L    A+KVI +E D++F  IL+++   + N +EI+ +D LK+D  +  N+  P +
Sbjct: 60  LTLELAK-KAKKVIGVEIDKRFKSILEELLKDY-NNVEILFEDVLKLDLSRIINL--PYK 115

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ NLPY I    L  +       P+   + ++ QKE+ ER+T+   S  Y  LS+L   
Sbjct: 116 LVGNLPYYISGSFLGEYFQK---GPYAHLMVIMLQKEMAERLTSSPGSKKYSPLSILLHI 172

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQ 239
                ++  +SP  FFP+P+V S V+    +         E   K+ +E+F +RRK L  
Sbjct: 173 TYSYEIISKVSPSCFFPAPEVESVVLKLKFNPKLDKIYNKEFFFKLIKESFNQRRKFLLN 232

Query: 240 SLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           +L+R       + +  +  I+  +RAE LS E +  ++N
Sbjct: 233 NLERAFPSIDWKYVFTELNIDGKIRAEELSPEGYITLSN 271


>gi|323344894|ref|ZP_08085118.1| dimethyladenosine transferase [Prevotella oralis ATCC 33269]
 gi|323094164|gb|EFZ36741.1| dimethyladenosine transferase [Prevotella oralis ATCC 33269]
          Length = 269

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 13/265 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK +GQ+FL DL+I K+IA++  +   I ++EIG G G LTQ L+T   R+V  +E 
Sbjct: 4   VRPKKNLGQHFLTDLSIAKRIADTVDTCPDIPILEIGPGMGVLTQFLVTKN-REVRAVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L +   Q  ++  II +D L++D    F       +  N PY+I +++ F  +
Sbjct: 63  DRESVAFLHENYPQLRDK--IIGEDFLRMDLSTIFG-GHTFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               + P     T + Q+EV +RI A   +   G LS+L         +F +  +VF P 
Sbjct: 120 EYRQFIP---CCTGMIQREVAQRIAASPGNKLNGILSILIQAWYNVEYLFTVDENVFDPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----GENLLHQA 253
           PKV S VI    +    + C     K++ +  F +RRK LR SL+++        + +  
Sbjct: 177 PKVKSAVIRMTRNNVTDLGCDEVLFKRLVKAVFNQRRKMLRVSLRQIFNQTKPSAVFYAQ 236

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
            +    R E L +  F  +TNI+ +
Sbjct: 237 DV-MTKRPEQLGVAQFVALTNIVAE 260


>gi|313115046|ref|ZP_07800536.1| dimethyladenosine transferase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622608|gb|EFQ06073.1| dimethyladenosine transferase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 287

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 16/288 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++ +   Y     K  GQNF+++  +  KI ++SG      VIEIG G G 
Sbjct: 4   MPELTDLSVIRALCEKYDFALSKGFGQNFIINPGLPPKIVDASGVDKRYGVIEIGPGIGV 63

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117
           LT+ L    A KV+ IE D++  P+L +  +   N  +++  D LKVD +          
Sbjct: 64  LTRELAKRAA-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAEEFPGM 121

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P+ + ANLPY I + ++   +         ESLT++ QKE  +R+ A   +     +S  
Sbjct: 122 PVAVCANLPYYITSPIVMKLLGDRLP---IESLTVMVQKEAADRLAAAPGTRASSAISCA 178

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             +   + MMF  +P  F+P+PKVTS V+       P       E    + + AFG+RRK
Sbjct: 179 VSYYATSKMMFTAAPGSFYPAPKVTSAVVRMEIRPQPAVQVEDEEGYFALVRAAFGQRRK 238

Query: 236 TLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           T   ++       +      +  AG +  +R E L++EDF +I   L 
Sbjct: 239 TAANAIASGLGMPKDAVTAAIEAAGFDARIRPEALTLEDFAKIQQALA 286


>gi|194869297|ref|XP_001972426.1| GG15524 [Drosophila erecta]
 gi|190654209|gb|EDV51452.1| GG15524 [Drosophila erecta]
          Length = 502

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 144/293 (49%), Gaps = 19/293 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64
              +++ ++  Y++  +K + QNFL+D  +  KI +S+G       V+E+G GPG +T+ 
Sbjct: 189 PMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDSRDLVLEVGPGPGGITRS 248

Query: 65  LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIR 120
           +L    ++++++EKD +F     +LK+ +S    + +I  DD L+ + E+   + S  I 
Sbjct: 249 ILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIH 308

Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +I NLP+ I TRLL NW+         +      +TL FQ+EV ERI A        RLS
Sbjct: 309 LIGNLPFAISTRLLINWLEDLAGRRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLS 368

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234
           V++   T+  M F I    F P P+V   V+  IP   P        ++++ +  F  R+
Sbjct: 369 VMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFPLVERVVRHIFSMRQ 428

Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           K  R+    L            L  +A ++  +R   L++E   R+  + +++
Sbjct: 429 KYCRRGFGTLLPPEDREEVAQKLFQRAEVQDTMRPFELTVEQCLRLAEVYSEH 481


>gi|313680695|ref|YP_004058434.1| dimethyladenosine transferase [Oceanithermus profundus DSM 14977]
 gi|313153410|gb|ADR37261.1| dimethyladenosine transferase [Oceanithermus profundus DSM 14977]
          Length = 273

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 18/281 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M    K  +++ +L  Y +   + +GQNFL+D  +L  I  ++    G  V E+G G G 
Sbjct: 1   MPSLTKPSTVRALLERYGLAADRRLGQNFLVDAGLLDVIVRTADVRPGQEVWEVGPGLGT 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L   GAR V  IEKD +  P+L++  +  P  +E+   DAL  D+ +   +     
Sbjct: 61  LTRALALAGAR-VHAIEKDTRLEPVLRETLAGLP--VELSFADALDCDWSE---VPPGSL 114

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
            ++NLPYN+ T LL   +    +      L +L Q+EV ER+ A   +P YG LS+    
Sbjct: 115 FVSNLPYNVATPLLSELLRQGRFG----RLVVLLQREVAERLAAAPGTPAYGLLSLRAAH 170

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +   + D  P  F+P PKVTST++       P       L ++ + AF  RRKTLR++
Sbjct: 171 HARVRKVRDFPPEAFYPRPKVTSTLVELEHTGAP---DDPELFRLIEAAFAARRKTLRKN 227

Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L++ G         L +AG+E  +RAE L IEDF ++   L
Sbjct: 228 LEQAGWPRDRVLAALAEAGLEPMVRAERLGIEDFRKLHAAL 268


>gi|257458323|ref|ZP_05623471.1| dimethyladenosine transferase [Treponema vincentii ATCC 35580]
 gi|257444258|gb|EEV19353.1| dimethyladenosine transferase [Treponema vincentii ATCC 35580]
          Length = 289

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N   +L  +L  +    +K  GQNFL++  I +++  + G   G +V E+G G G++T +
Sbjct: 9   NAPSALAAVLDEHGFGMQKKFGQNFLINAYIRQELVSALGLSAGNSVWEVGPGLGSMTSL 68

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL  GA  V V E D+ F  +L      H +   +I+ D LK    ++ +   P     N
Sbjct: 69  LLETGAD-VTVFEIDRGFVQLLTSYFGPHQS-FHLIEGDVLKTWKAEY-DRQVPDAFFGN 125

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI  +L+   I  +    F+  + +  QKEVG R+TA   S  Y   SVL  W    
Sbjct: 126 LPYNIAAKLIAATIETEC---FFNRMVITVQKEVGLRMTAAPGSADYSSFSVLCQWAYDV 182

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243
           T + DI+P  F+P P V S  + FI   +P P     L   + +  FG RRKT++ +L  
Sbjct: 183 TPIRDIAPAAFWPKPNVESRALRFIKKRSPQPVRDARLFLTLVRGLFGARRKTVKNNLST 242

Query: 244 L---------GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L           E LL +A I+   RAE+L++ DF R+++I+ 
Sbjct: 243 LLAARGKKTPSAEALLKEASIDPVDRAESLTVYDFIRLSDIVA 285


>gi|83816376|ref|YP_446299.1| dimethyladenosine transferase [Salinibacter ruber DSM 13855]
 gi|119365670|sp|Q2S0I2|RSMA_SALRD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83757770|gb|ABC45883.1| dimethyladenosine transferase [Salinibacter ruber DSM 13855]
          Length = 296

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/266 (29%), Positives = 126/266 (47%), Gaps = 11/266 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             PK+ +GQNFL D N+ +KI  +  +     V+E+GAG G LT+ L     R +  +E 
Sbjct: 34  FRPKQSLGQNFLHDPNMAEKIVGTLTAPPEAHVVEVGAGTGVLTERLAERHDR-LTALEI 92

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137
           D++   +L++   +      + + D  + D+    +    P+R+I+N PY + + +LF  
Sbjct: 93  DERAVEVLRERVPEAD----VRETDVRETDWAALADEKGGPLRVISNTPYYLTSPILFAL 148

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +             L  QKEV ERI A+ ++  YG LSVL     + T+ F + P VF P
Sbjct: 149 LGQRDC---LAEAVLTMQKEVAERIVAEPSTKAYGILSVLLQLFAEPTLCFTVPPQVFSP 205

Query: 198 SPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P VTS V+     P   P     +  ++  + AF +RRK LR SL     E  +     
Sbjct: 206 QPDVTSAVVRIRFGPDTEPEDLHFDDARRYVRAAFNQRRKMLRNSLSAWTKEQDVGFPND 265

Query: 256 ETNLRAENLSIEDFCRITNILTDNQD 281
               RAE L+ ++F  +   L  + D
Sbjct: 266 WGRKRAEALTPDEFATLARHLDAHAD 291


>gi|34581355|ref|ZP_00142835.1| dimethyladenosine transferase [Rickettsia sibirica 246]
 gi|28262740|gb|EAA26244.1| dimethyladenosine transferase [Rickettsia sibirica 246]
          Length = 301

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 153/303 (50%), Gaps = 38/303 (12%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113
                + VIE D++  P+L +I   +PN L II+ DALK++                   
Sbjct: 63  KNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121

Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                            +I   + II+NLPY+IGT L+  W+          S+TL+ QK
Sbjct: 122 EAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAR---LITSMTLMLQK 178

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PI 215
           EV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  N P 
Sbjct: 179 EVVERICAIPSTKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENSPS 238

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273
              +  +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI 
Sbjct: 239 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRIA 298

Query: 274 NIL 276
            IL
Sbjct: 299 EIL 301


>gi|320095741|ref|ZP_08027390.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977327|gb|EFW09021.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 301

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 17/281 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ I     I P K +GQNF+ D   +++I  ++G  +G  VIE+G G G+LT  LL  
Sbjct: 2   EVRAISGALGIRPTKALGQNFVHDAGTVRRIVAAAGVGEGDEVIEVGPGLGSLTLALLEA 61

Query: 69  GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFF--NISSPIRII 122
           GAR V  +E D      L +          +RL ++  DA  +        +   P +++
Sbjct: 62  GAR-VRAVEIDPVLAAALPETVRARMGGAADRLHVVTADATAITGPADLGPDWPPPAKLV 120

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L   + +    P    + ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 121 ANLPYNVAVPVLLAMLDS---FPTLTDVLVMVQAEVADRLAAGPGSRTYGVPSVKAAWYG 177

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQS 240
           +AT    I   VF+P P V S ++                +  + T  AFG+RRKTLR +
Sbjct: 178 RATRAGTIGRSVFWPVPGVDSALVRLRRSAEARGDDALRRATFEATDAAFGQRRKTLRAA 237

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK   G     E LL +AGI+   R E L+I++F R+   L
Sbjct: 238 LKDWAGGAAASEALLAEAGIDPARRGETLTIDEFTRLGAAL 278


>gi|238797489|ref|ZP_04640987.1| Dimethyladenosine transferase [Yersinia mollaretii ATCC 43969]
 gi|238718630|gb|EEQ10448.1| Dimethyladenosine transferase [Yersinia mollaretii ATCC 43969]
          Length = 232

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/230 (37%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G G LT+ +     R + VIE D+     L     Q  ++L I Q DA+KV+F 
Sbjct: 1   MVEIGPGLGALTEPVAARMDR-MTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFA 58

Query: 111 KFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
           +   +   P+R+  NLPYNI T L+F+  S          +  + QKEV  R+ A  NS 
Sbjct: 59  ELAELAGQPLRVFGNLPYNISTPLMFHLFSYTNA---IRDMHFMLQKEVVNRLVAGPNSK 115

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQ 227
            YGRL+V+  +      + ++ P  F P+PKV S V+  IPH+N P P   +  L +IT 
Sbjct: 116 AYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITT 175

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +AF +RRKT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 176 QAFNQRRKTVRNSLGDLFTAEQLIELGIDPILRAENISVAQYCKLANWLS 225


>gi|326383797|ref|ZP_08205482.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326197561|gb|EGD54750.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 311

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 17/280 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K +GQNF+ D N +++I  +SG      V+E+G G G+LT  LL
Sbjct: 26  PAEIRALAAELDVRPTKTLGQNFVHDANTVRRIVTASGIGADDVVLEVGPGLGSLTLALL 85

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V+ +E D++    L    ++         +++  DAL V         +P  ++
Sbjct: 86  AE-AGRVVAVEIDRKLAARLPRTIAEFAPGQAANFDVVTADALGVLPGDL--PQTPTALV 142

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + ++     P   +  ++ Q EV +R+ A      YG  SV   +  
Sbjct: 143 ANLPYNVAVPVLLHLMAQ---FPTIRTALVMVQAEVADRLAATPGGRIYGVPSVKARFFG 199

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQS 240
                  I  HVF+P PK+ S ++           P        +   AF +RRKTLR +
Sbjct: 200 DVARAGSIGKHVFWPEPKIESGLVRIDRRDAFGTDPALRSETFAVIDAAFAQRRKTLRSA 259

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           L    G     E LL  A I+  LR E  +++DF R+   
Sbjct: 260 LSSWAGSAPHAEELLRAAEIDPGLRGERCTVDDFVRLARA 299


>gi|332877785|ref|ZP_08445524.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684250|gb|EGJ57108.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 277

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/275 (32%), Positives = 130/275 (47%), Gaps = 24/275 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL I + IA++  +  GI V+E+G G G +TQ L+    R + V+E 
Sbjct: 4   VKPKKFLGQHFLKDLKIAQDIADTVDACPGIPVLEVGPGMGVMTQFLV-RKDRPLKVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L+    Q      II+DD LK+  E+ F    P  +  N PYNI +++ F  +
Sbjct: 63  DFESVAYLRTHYPQLEEN--IIEDDFLKMHLERTFG-GQPFVLTGNYPYNISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + QKEV ERI A   S  YG LSVL         +F +  HVF P 
Sbjct: 120 DYKDLIP---CCTGMIQKEVAERIAAGPGSKTYGILSVLLQAWYSVEYLFTVHEHVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--------- 248
           PKV S VI    +    + C     K++ +  F +RRK LR S++ +  +          
Sbjct: 177 PKVKSAVIRMTRNATTDLGCDERLFKQVVKTTFNQRRKVLRNSIRPVLADADHKVQQEGR 236

Query: 249 ------LLHQAGIETNLRAENLSIEDFCRITNILT 277
                     A I    R E LS+ +F  +TN + 
Sbjct: 237 LPKDHTEFLSAEI-FGRRPEQLSVAEFVNLTNAVA 270


>gi|223938516|ref|ZP_03630408.1| dimethyladenosine transferase [bacterium Ellin514]
 gi|223892778|gb|EEF59247.1| dimethyladenosine transferase [bacterium Ellin514]
          Length = 278

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 12/277 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +K IL+  +I   K +GQNFL D N L++IA+ +       V+EIG G G LT++L
Sbjct: 2   KLTEMKQILASGQIQLTKSLGQNFLHDQNQLRRIADGAELSKSDKVLEIGPGLGPLTELL 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           +   A +V+ IEKD++    L+   +       ++  DAL+    +  + SS  +++ANL
Sbjct: 62  IER-AGEVLAIEKDRRLVDFLEKRYANTAG-FTLLHQDALEYIRREPQDWSS-WKLVANL 118

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY++ + +L +   +   P     + +  Q EV  R+ AQ +   YG LS+L     +  
Sbjct: 119 PYSVASPILVDLAQSKGCP---RMMVVTLQLEVARRLVAQTDDDDYGVLSLLIQLYYEPQ 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKR 243
             F I    FFP+P V S  +       P+      ++  ++ + A  +RRK + + LK+
Sbjct: 176 GHFKIPSDCFFPAPDVDSACVVLKRREQPLLTSELNDAFARLVKLALSQRRKMMLKLLKQ 235

Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276
                       +  +   +RAE +S+E F R+T IL
Sbjct: 236 NWPVEKLTAAFEELQLSPQIRAEKVSLEQFVRLTQIL 272


>gi|228995432|ref|ZP_04155102.1| Dimethyladenosine transferase [Bacillus mycoides Rock3-17]
 gi|229003046|ref|ZP_04160903.1| Dimethyladenosine transferase [Bacillus mycoides Rock1-4]
 gi|228758204|gb|EEM07392.1| Dimethyladenosine transferase [Bacillus mycoides Rock1-4]
 gi|228764293|gb|EEM13170.1| Dimethyladenosine transferase [Bacillus mycoides Rock3-17]
          Length = 258

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 20/259 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            +I + +        IEIG G G LT+ L    A+KV+  E DQ+  PIL +  + + N 
Sbjct: 2   NRIVDYAEIGPESGAIEIGPGIGALTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYSN- 59

Query: 97  LEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
           + +I  D LK D  + F         + ++ANLPY + T +LF  +             +
Sbjct: 60  VTVINKDILKADVHEVFGEQFEKGQDVMVVANLPYYVTTPILFKLLEEQLP---VRGFVV 116

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + QKEVG+R+ A+  +  YG LS+   + T+   +  +   VF P P V S VI  +   
Sbjct: 117 MMQKEVGDRLAAKPGTKDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRLLKRP 176

Query: 213 NPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRA 261
            PI      +   ++ + +F +RRKTL  +L              + +L + GI+   R 
Sbjct: 177 KPIVEVKDEKFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRG 236

Query: 262 ENLSIEDFCRITNILTDNQ 280
           E LSIE+F  ++N L  ++
Sbjct: 237 ETLSIEEFAALSNALVSHK 255


>gi|209526260|ref|ZP_03274790.1| dimethyladenosine transferase [Arthrospira maxima CS-328]
 gi|209493357|gb|EDZ93682.1| dimethyladenosine transferase [Arthrospira maxima CS-328]
          Length = 274

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 128/268 (47%), Gaps = 13/268 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L     L  I E++    G  ++EIG G G LT+ LL      V+ +E D
Sbjct: 5   QPRKRFAQHWLRSPATLNHILEAADLSLGDRILEIGPGTGILTERLLP-KVSSVVAVEID 63

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135
           +     L     +  N L ++Q D L  D       F    +P +++AN+PYNI   ++ 
Sbjct: 64  RDLCVQLAKKFGKIDNFL-LLQGDILNFDLNGYLSGFPKFQNPNKVVANIPYNITGPIIE 122

Query: 136 NWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             +     P    ++++ LL QKEVG R+ A+ +S  +G LSV   +  +   +  +   
Sbjct: 123 GLLGTIAKPAVKPFDAIVLLVQKEVGARLCAKPSSKAFGALSVRVQYLAECDWICHVPAT 182

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE----N 248
            F+P PKV S V+   P     P    + L+ + +  F  RRK LR +LK          
Sbjct: 183 AFYPPPKVDSAVVRLRPRPIASPAQNPQLLETLVKLGFSTRRKMLRNNLKSQVEPQTLNQ 242

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
           LL    I   +RAE+LS++ + +++N+L
Sbjct: 243 LLETLDINPQVRAEDLSLQQWVQLSNLL 270


>gi|71891913|ref|YP_277643.1| dimethyladenosine transferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|122064283|sp|Q493R7|RSMA_BLOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71796019|gb|AAZ40770.1| dimethyladenosine transferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 267

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 88/262 (33%), Positives = 130/262 (49%), Gaps = 10/262 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQ 80
           KK   Q FL D N++  I ++        ++EIG G G LT+ +L +     +I+IE+D 
Sbjct: 12  KKKWSQVFLKDQNVIDTIVKTINPKKHQKILEIGPGLGALTKQILNIADLDSLILIERDS 71

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWIS 139
                L         ++ I+  D +  +F      +   +R+I NLPYNI T L+     
Sbjct: 72  NLVNRL---VQMFNKKINILHQDIMTTNFFDLSHKVGQKLRLIGNLPYNIATELIVYLF- 127

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +      +  +FQKEV  R+ A  N   YGRLS++T +  K   +  I    FFP P
Sbjct: 128 --QYTNVIYDMHFMFQKEVATRLYANPNKKEYGRLSIITQYHCKVVPLLTIPATSFFPIP 185

Query: 200 KVTSTVIHFIPHLN-PIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV S V+  +PH N P P   +  L  +T+ AF +RRKTLR SL     E  + Q GI  
Sbjct: 186 KVESMVMRLLPHTNTPYPIVNIGKLSSLTKLAFRQRRKTLRNSLSTFFNETEITQKGINP 245

Query: 258 NLRAENLSIEDFCRITNILTDN 279
            LRAEN++I  +C + N+L + 
Sbjct: 246 ALRAENITINQYCTLANMLNNK 267


>gi|57234784|ref|YP_181149.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195]
 gi|119365020|sp|Q3Z9F0|RSMA_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|57225232|gb|AAW40289.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195]
          Length = 291

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 15/277 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y +  +K +GQ+FL+   +L KI  ++      TVIE+G G G LT+ L+   A
Sbjct: 20  KEMMEGYTLRARKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELIKR-A 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +VI +E D +    L +    +PN   II  D LK    +    + P +++ANLPY I 
Sbjct: 79  GQVIAVELDDKLVTALTEKFKAYPN-FRIIHSDILKTSPAEILGQNIPYKLVANLPYYIT 137

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +L  ++ A+  P   E + ++ QKEV + + AQ      G L++   +    +++  +
Sbjct: 138 SAVLRQFLEAEAKP---ELMVVMVQKEVAKNMVAQTGDM--GLLTLSVRFYGNPSLVSVV 192

Query: 191 SPHVFFPSPKVTSTVIHF-IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSL------K 242
               F+P P+V S ++   IP    +         K+ +  FG RRKTL  +L       
Sbjct: 193 PGGAFYPPPEVDSAIVKVAIPQAAIMQGVSEADFFKLARAGFGTRRKTLLNALAQGLGVS 252

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           +     LL++AGIE   RAE LS+E++  +  + T+N
Sbjct: 253 KQSVLALLNRAGIEPARRAETLSMEEWKMLCLVYTEN 289


>gi|27151572|sp|Q8PU18|RSMA_METMA RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
          Length = 271

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 27/280 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +++IL  Y I       Q+FL+D   L +I  ++      TV+EIGAG GNLT+ L    
Sbjct: 2   VRSILKKYNIKG-GTFDQHFLIDAGYLDRIVAAAELSPQDTVLEIGAGIGNLTERLARR- 59

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI +E D     +L D      N +EII  DALKVDF +F       ++++NLPY+I
Sbjct: 60  AKKVIAVELDPALVSVLHDRFDAAEN-IEIIAGDALKVDFPEF------DKVVSNLPYSI 112

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F  +        ++   L++Q E   R+ +      Y RL++ T +   A+++  
Sbjct: 113 SSEITFKLLRHK-----FKLGVLMYQYEFAVRMVSPPGCKDYSRLTIDTCYFADASIVMK 167

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGEN 248
           +    F P+P+V S VI  IP   P     E+   +     F +RRK LR ++  L   +
Sbjct: 168 VPKGAFQPAPEVDSAVIKLIPRPAPFEVRDETFFLQFVAAVFSQRRKKLRNAI--LNTSS 225

Query: 249 LLHQAGIET----------NLRAENLSIEDFCRITNILTD 278
           LL    I+           N RAE+L+ E+   + N++ D
Sbjct: 226 LLKIPDIKEIVSQLPEDFMNKRAEDLTPEELASVANMIFD 265


>gi|327403715|ref|YP_004344553.1| dimethyladenosine transferase [Fluviicola taffensis DSM 16823]
 gi|327319223|gb|AEA43715.1| dimethyladenosine transferase [Fluviicola taffensis DSM 16823]
          Length = 262

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 10/267 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            +  KK++GQ+FL D  + K+IAE      G  T IE+G G G LT+ L+      + V+
Sbjct: 3   NVRAKKHLGQHFLKDKGVCKRIAEQFKHHQGVKTAIEVGPGMGALTEFLIQDPETNLYVM 62

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           + DQ+    LK   SQ   R  I+  D LK+D         P  ++ N PYNI +++LF 
Sbjct: 63  DVDQESIDYLKINYSQLGER--IVFADFLKIDPTTIVGQ-EPFAVLGNFPYNISSQILFK 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I      P    +   FQKEV  R+  +  +  YG LSVL          F +  HVF 
Sbjct: 120 CIDLKDHVPEIMGM---FQKEVALRVAEKPGTKVYGILSVLLQAYYDIEYCFTVDEHVFD 176

Query: 197 PSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S VI     +   +PC  +  K++ + +F +RRKT+R S+K L  E       +
Sbjct: 177 PPPKVKSGVIRCTRNNREKLPCDEKLFKQVVKMSFNQRRKTIRNSIKALLPETYEENPML 236

Query: 256 ETNLRAENLSIEDFCRITNILTDNQDI 282
              LR E L +E+F  +TN +  ++ +
Sbjct: 237 --QLRPERLGVEEFIELTNWVEKHRKV 261


>gi|254416619|ref|ZP_05030370.1| dimethyladenosine transferase [Microcoleus chthonoplastes PCC 7420]
 gi|196176585|gb|EDX71598.1| dimethyladenosine transferase [Microcoleus chthonoplastes PCC 7420]
          Length = 283

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 13/270 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
              K   Q++L     L +I  ++       ++EIG G G LT+ LL      ++ +E D
Sbjct: 4   KAHKQFAQHWLRSEKALNQIITAAKLQPRDRLLEIGPGTGVLTRRLLGE-VESLVAVEID 62

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLF 135
           +     L     Q+ N L ++Q D L ++  +    F +  SP +++AN+PYNI   +L 
Sbjct: 63  RDLCQRLVKSLGQNENFL-LLQGDILSLNLAEHLAAFPHFQSPNKVVANIPYNITGPILQ 121

Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             +     P  P +E + LL QKEV +R+ A+  S  +G LSV   +      + D+   
Sbjct: 122 TLLGTIAQPITPAFELIVLLVQKEVAQRLCAKPGSKAFGALSVRVQYLADCDWICDVPAI 181

Query: 194 VFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248
            F P PKV S V+   P  ++P     + L+ + +  F  +RK LR +LK L   +    
Sbjct: 182 AFSPPPKVDSAVVRLRPRIVDPSADNPQQLETLVKLGFASKRKMLRNNLKSLCDRDKINQ 241

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           LL Q       RAE+LS+  +  + N L +
Sbjct: 242 LLEQVDSHPQARAEDLSVSQWVALANRLNE 271


>gi|170077519|ref|YP_001734157.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase
           [Synechococcus sp. PCC 7002]
 gi|226732632|sp|B1XIV9|RSMA_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|169885188|gb|ACA98901.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase
           [Synechococcus sp. PCC 7002]
          Length = 273

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 13/271 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P+K  GQ++L D  IL +I  ++       V+EIG G G LT  LL      ++ +E 
Sbjct: 1   MRPRKRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLPQ-VEALLSVEI 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----PIRIIANLPYNIGTRLL 134
           D+     +       PN L +++ D L+ D  +F         P +++AN+PYNI   +L
Sbjct: 60  DRDLCKYMVKNYGDRPNFL-LLEADYLQTDINEFLGDFPQFQNPRKVVANIPYNITGPIL 118

Query: 135 FNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
              +     P    +ES+ LL QKEVG+R+ A   +  +G L++   +      +  + P
Sbjct: 119 EKLLGTIDRPNSNPFESIVLLIQKEVGDRLVAHPCTKAFGALTLRVQYLADCETVCVVPP 178

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
             F+P PKV S V+   P     P    + L  + +  F  +RK LR +LK L    +L 
Sbjct: 179 KAFYPKPKVESVVVRLRPRPLAQPAQNPKLLATLIKVGFASKRKMLRNNLKSLYNPEILD 238

Query: 252 ----QAGIETNLRAENLSIEDFCRITNILTD 278
                  I    R E + +  +  +++ L D
Sbjct: 239 PIFADLDISPQARGEEVDLLQWIALSDRLND 269


>gi|260910119|ref|ZP_05916796.1| dimethyladenosine transferase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635623|gb|EEX53636.1| dimethyladenosine transferase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 267

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 129/270 (47%), Gaps = 15/270 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL I ++IA++  +   + ++E+G G G LTQ L T   R + V+E 
Sbjct: 4   VRPKKHLGQHFLTDLGIARRIADTVDACPELPILEVGPGMGVLTQYLAT-KERPLRVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L            ++ +D L++D +  F+   P  +  N PY+I +++ F  +
Sbjct: 63  DTESVEYLHKNFPLLAEN--VLGEDFLRMDLDGVFS-GQPFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  RI +Q  +  YG LSVL         +F +   VF P 
Sbjct: 120 DNKHLIP---CCTGMIQREVALRIASQPGTKAYGILSVLIQAWYDVEYLFTVDETVFNPP 176

Query: 199 PKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252
           PKV S VI    +    + C     K++ +  F +RRK LR SL++L            Q
Sbjct: 177 PKVKSAVIRMTRNAVENLGCNEALFKRVVKTVFNQRRKMLRVSLRQLFAGMPASPEFYAQ 236

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDI 282
                  R E LS+ +F ++TN++    + 
Sbjct: 237 EMF--TRRPEQLSVAEFVQLTNMVEQEMNA 264


>gi|241765842|ref|ZP_04763779.1| dimethyladenosine transferase [Acidovorax delafieldii 2AN]
 gi|241364241|gb|EER59413.1| dimethyladenosine transferase [Acidovorax delafieldii 2AN]
          Length = 256

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 86/262 (32%), Positives = 129/262 (49%), Gaps = 20/262 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+    R + VIE
Sbjct: 2   KHIPRKRFGQHFLSDGGIIDAIVSAIAPQPGQPMVEIGPGLAALTQPLVERLGR-LTVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLF 135
            D+     L+        +LE+I+ D LKVDF +       + +R++ NLPYNI T +LF
Sbjct: 61  LDRDLALRLR-----LHGQLEVIESDVLKVDFTQLARDMHVARLRVVGNLPYNISTPILF 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +         E    + QKEV +R+ A   +  YGRLSV+  WR     +  + P  F
Sbjct: 116 HLLDHVQ---VIEDQHFMLQKEVIDRMVAAPATADYGRLSVMLQWRYAMENVLFVPPESF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG- 254
            P P+V S V+  +P   P+      L ++ Q AF +RRK LR +L R      L   G 
Sbjct: 173 DPPPRVDSAVVRMVPWAEPVAVPPALLSELVQVAFSQRRKLLRHTLGRW-----LEGRGF 227

Query: 255 ---IETNLRAENLSIEDFCRIT 273
               +T  RAE + ++++  + 
Sbjct: 228 GGTFDTQRRAEEVPVQEYVALA 249


>gi|254447589|ref|ZP_05061055.1| dimethyladenosine transferase [gamma proteobacterium HTCC5015]
 gi|198262932|gb|EDY87211.1| dimethyladenosine transferase [gamma proteobacterium HTCC5015]
          Length = 226

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 9/231 (3%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           EIG G G LT   L      +  +E D+   P L+ +   H  RL I + DALK DF   
Sbjct: 2   EIGPGLGALTAPALER-VEHMDAVELDRDLIPKLQTL--DHAERLTIHECDALKFDFAAL 58

Query: 113 FNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             +   P+R+I NLPYNI + L+F+ +         + +  + QKEV ER+ A   +  Y
Sbjct: 59  GKLRDKPLRVIGNLPYNISSPLIFHLLHNAEC---IQDMHFMLQKEVVERLAASPGTGDY 115

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLES-LKKITQEA 229
           GRLSV    + +   +F + P  F P+PKV S ++   P   P+ P  L+  L+ + + A
Sbjct: 116 GRLSVAVQAQCRVRYLFTVPPGCFTPAPKVDSAIVRLEPLDEPLCPKALQGPLEDLLRTA 175

Query: 230 FGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           F +RRKTLR +LK L     +   GI+ +LR E L +EDF R+   LT + 
Sbjct: 176 FHQRRKTLRNNLKGLLSSEAIEACGIDPSLRPERLCVEDFVRLVKALTRHH 226


>gi|284053579|ref|ZP_06383789.1| dimethyladenosine transferase [Arthrospira platensis str. Paraca]
          Length = 276

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 13/268 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L     L  I E++       ++EIG G G LT+ LL   A  V+ IE D
Sbjct: 5   QPRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLP-KASSVVAIEID 63

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135
           +     L     +  N L ++Q D L  D       F     P +++AN+PYNI   ++ 
Sbjct: 64  RDLCVQLAKKFGKIDNFL-LLQGDILSFDLNAHLSAFPQFQHPNKVVANIPYNITGPIIE 122

Query: 136 NWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             +     P    ++++ LL QKEVG+R+ A+ +S  +G LSV   +  +   +  +   
Sbjct: 123 GLLGTIAKPALKPFDAIVLLVQKEVGDRLCAKPSSKAFGALSVRVQYLAECDWICHVPAK 182

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            F+P PKV S V+   P     P    + L+ + +  F  RRK LR +LK      +L+Q
Sbjct: 183 AFYPPPKVDSAVVRLRPRPIASPAQNPQLLETLVKLGFSTRRKMLRNNLKSQVEPQILNQ 242

Query: 253 ----AGIETNLRAENLSIEDFCRITNIL 276
                 I   +RAE+LS++ + +++N+L
Sbjct: 243 LLETLDINPQVRAEDLSLQQWVQLSNLL 270


>gi|206891185|ref|YP_002249355.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206743123|gb|ACI22180.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 263

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 95/263 (36%), Positives = 138/263 (52%), Gaps = 15/263 (5%)

Query: 19  IIPKK-YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           I  KK  +GQ+FL +  IL+KI + S       V+EIGAG G+LT++LL   A++VI IE
Sbjct: 5   ISKKKPKLGQHFLRNAEILEKIVKVSEINSNDKVVEIGAGMGDLTEILLK-NAKEVIAIE 63

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D   + ILK+      N L +I ++ALK  +E+        +++AN+PY I   ++F  
Sbjct: 64  IDPVLYKILKERFYGKEN-LVLINENALKFPYEEI----GQFKVVANIPYYITKPIIFKL 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +          S+TL  QKEV ER+ A+ ++  Y  LS++  + T+A + F I    F P
Sbjct: 119 LKLKNLI----SMTLTIQKEVAERLAAKPSTKAYSALSIIAQYYTQAEIKFYIPASFFNP 174

Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
            P+V S VI               +   KI + AFG+RRK +  SLK +  E    L + 
Sbjct: 175 PPEVESAVIKMDRRDKSPVEVIDEKLFFKIIKSAFGQRRKMISNSLKSIIDEPKEFLIKI 234

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
           GI    R E LSIEDF  I+N L
Sbjct: 235 GINPIKRPEELSIEDFAFISNEL 257


>gi|320527164|ref|ZP_08028351.1| dimethyladenosine transferase [Solobacterium moorei F0204]
 gi|320132492|gb|EFW25035.1| dimethyladenosine transferase [Solobacterium moorei F0204]
          Length = 280

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 18/285 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + +     K IL  + +  KK  GQNFL+D  I+++ AE S       VIEIG G G+LT
Sbjct: 4   LISTPSRTKEILDQFGLRAKKGFGQNFLVDPIIVERCAEMSHC--EGAVIEIGPGIGSLT 61

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSP 118
           + L    A+ V+  E D+   P+L+     + N +EII  D L  D ++           
Sbjct: 62  EQLAMH-AQHVLAFEIDEGLIPVLQHTLEGYSN-VEIILQDFLMCDLDEVVHALKEKYGT 119

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           + + ANLPY I T +LF         P    +T++ QKEVG+R  A+   P Y  LSV  
Sbjct: 120 VSVCANLPYYITTPVLFKIFEN----PDISYITVMVQKEVGDRFVAKPKDPEYNALSVEG 175

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTL 237
            +      +F +    F PSP V S +I F    N      +    ++ +  F +RRKT+
Sbjct: 176 QYLFDIKRLFTVPGRSFNPSPAVDSVIIQFARKDNDASNEEIRDFFELVRACFKQRRKTI 235

Query: 238 RQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             +LK    +      +L +A I  N RA+ L+I++  +I  ++ 
Sbjct: 236 YNNLKEYVDDGVKATEILEKANIPVNKRAQELTIDELKQIHEVMK 280


>gi|270307774|ref|YP_003329832.1| dimethyladenosine transferase [Dehalococcoides sp. VS]
 gi|270153666|gb|ACZ61504.1| dimethyladenosine transferase [Dehalococcoides sp. VS]
          Length = 291

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 81/271 (29%), Positives = 139/271 (51%), Gaps = 15/271 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K ++  Y +  +K +GQ+FL+   +L KI  ++      TVIE+G G G LT+ LL   A
Sbjct: 20  KEMMEGYTLKARKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELLER-A 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +VI +E D +    L +    +PN  +II  D LK+  E+    + P +++ANLPY I 
Sbjct: 79  GQVIAVELDDKLVNALTEKFKAYPN-FKIIHSDILKISPEEILGQNIPYKLVANLPYYIT 137

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + +L  ++ A+  P   E + ++ QKEV + + A+      G L++   +     ++  +
Sbjct: 138 SAVLRQFLEAEIKP---ELMVVMVQKEVAKNMVAKTGDM--GLLTLSVRFYGNPALVATV 192

Query: 191 SPHVFFPSPKVTSTVIH-FIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
               F+P P+V S ++   IP    +         K+ +  FG RRKTL  +L +  G +
Sbjct: 193 PAGAFYPPPEVDSAIVKVVIPQTTIMDGVSAVDFFKLARAGFGTRRKTLLNALAQGLGIS 252

Query: 249 ------LLHQAGIETNLRAENLSIEDFCRIT 273
                 LL ++GI+   RAE LS+E++ R+ 
Sbjct: 253 KQDILLLLERSGIDPARRAETLSMEEWKRLC 283


>gi|75911082|ref|YP_325378.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413]
 gi|122064280|sp|Q3M3F3|RSMA_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|75704807|gb|ABA24483.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413]
          Length = 271

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 13/269 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P++   Q++L     L  I +++       ++EIG G G LT+ LL L    ++ +E 
Sbjct: 2   VRPRRVFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPL-VEALLAVEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLL 134
           D+    +L     Q  N L ++Q D L +D       F     P +++AN+PYNI   ++
Sbjct: 61  DRDLCKLLVKQLGQKENFL-LLQGDFLTLDLVANLLTFPKFQKPNKVVANIPYNITGPII 119

Query: 135 FNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
              +   A+  P  ++S+ LL QKEV ER+ A+  S  +G LSV   +      + D+  
Sbjct: 120 EKLLGTIANPNPEPFDSIVLLIQKEVAERLYAKAGSRTFGALSVRVQYLADCEFICDVPA 179

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248
             F P PKV S V+   P    IP    + L+ + +  FG +RK LR +L+ +   +   
Sbjct: 180 GAFHPPPKVDSAVVRLRPRQIQIPARDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLS 239

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276
            LL Q  I    RAE++S + +  + N+L
Sbjct: 240 QLLEQLNINPQARAEDISTQQWVELANLL 268


>gi|294508235|ref|YP_003572293.1| Dimethyladenosine transferase [Salinibacter ruber M8]
 gi|294344563|emb|CBH25341.1| Dimethyladenosine transferase [Salinibacter ruber M8]
          Length = 269

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 79/266 (29%), Positives = 126/266 (47%), Gaps = 11/266 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             PK+ +GQNFL D N+ +KI  +  +     V+E+GAG G LT+ L     R +  +E 
Sbjct: 7   FRPKQSLGQNFLHDPNMAEKIVGTLTAPPEAHVVEVGAGTGVLTERLAERHDR-LTALEI 65

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137
           D++   +L++   +      + + D  + D+    +    P+R+I+N PY + + +LF  
Sbjct: 66  DERAVEVLRERVPEAD----VRETDVRETDWAALADEKGGPLRVISNTPYYLTSPILFAL 121

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +             L  QKEV ERI A+ ++  YG LSVL     + T+ F + P VF P
Sbjct: 122 LGQRDC---LAEAVLTMQKEVAERIVAEPSTKAYGILSVLLQLFAEPTLCFTVPPQVFSP 178

Query: 198 SPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P VTS V+     P   P     +  ++  + AF +RRK LR SL     E  +     
Sbjct: 179 QPDVTSAVVRIRFGPDTEPEDLHFDDARRYVRAAFNQRRKMLRNSLSAWTKEQDVGFPND 238

Query: 256 ETNLRAENLSIEDFCRITNILTDNQD 281
               RAE L+ ++F  +   L  + D
Sbjct: 239 WGRKRAEALTPDEFATLARHLDAHAD 264


>gi|120613389|ref|YP_973067.1| dimethyladenosine transferase [Acidovorax citrulli AAC00-1]
 gi|226729744|sp|A1TWF5|RSMA_ACIAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120591853|gb|ABM35293.1| dimethyladenosine transferase [Acidovorax citrulli AAC00-1]
          Length = 253

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 88/262 (33%), Positives = 128/262 (48%), Gaps = 12/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K IP+K  GQ+FL D  I+  I  +     G  ++EIG G   LTQ L+    R + V+E
Sbjct: 2   KHIPRKRFGQHFLADQAIIDAIVRAIAPAPGQPMVEIGPGLAALTQPLVERLGR-LTVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLF 135
            D+     L+        +L++I+ D LKVDF        +  IRI+ NLPYNI T +LF
Sbjct: 61  LDRDLAQRLRSH-----GQLDVIESDVLKVDFSAVAANLGAPRIRIVGNLPYNISTPILF 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +         E    + QKEV +R+ AQ  +  YGRLSV+  WR     +  + P  F
Sbjct: 116 HLLEHVG---VVEDQHFMLQKEVIDRMVAQPATSDYGRLSVMLQWRYAMEDVLFVPPESF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P P+V S V+  +PH  P P     L+++ Q AF +RRK LR +L R            
Sbjct: 173 DPPPRVDSAVVRMVPHAAPAPVAPRLLEELVQVAFSQRRKLLRHTLGRWLEARQFTGT-F 231

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           +T  RAE + + D+  +     
Sbjct: 232 DTQRRAEEVPVADYVALAQACA 253


>gi|229587025|ref|YP_002845526.1| dimethyladenosine transferase [Rickettsia africae ESF-5]
 gi|259494256|sp|C3PPC3|RSMA_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|228022075|gb|ACP53783.1| Dimethyladenosine transferase [Rickettsia africae ESF-5]
          Length = 301

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 153/303 (50%), Gaps = 38/303 (12%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + +++ P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRAILQ 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-------------- 113
                + VIE D++  P+L +I   +PN L II+ DALK++                   
Sbjct: 63  KNPESLTVIETDERCLPLLNEIKEYYPN-LNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121

Query: 114 -----------------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                            +I   + II+NLPY+IGT L+  W+          S+TL+ QK
Sbjct: 122 EAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEAQ---LITSMTLMLQK 178

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PI 215
           EV ERI A  ++  YGRLSV+     K    FD++P  F+P PKV S ++  IP  N P 
Sbjct: 179 EVVERICAIPSTKAYGRLSVICQLIVKVEKCFDVAPTAFYPPPKVYSAIVKLIPLENSPS 238

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRIT 273
              +  +++IT+ AF  RRK ++ SLK L      +L Q  I  N RAENL+ +D+ RI 
Sbjct: 239 IALINKVEQITKLAFAGRRKMIKSSLKNLVPNIHEVLTQLKINDNYRAENLAPQDYLRIA 298

Query: 274 NIL 276
            IL
Sbjct: 299 EIL 301


>gi|108801227|ref|YP_641424.1| dimethyladenosine transferase [Mycobacterium sp. MCS]
 gi|123178211|sp|Q1B416|RSMA_MYCSS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|108771646|gb|ABG10368.1| dimethyladenosine transferase [Mycobacterium sp. MCS]
          Length = 294

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 127/286 (44%), Gaps = 20/286 (6%)

Query: 1   MTMNNKSHS-LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           MT+     + ++ +       P+K  GQNF+ D N +++I  +SG      V+++G G G
Sbjct: 1   MTIRLLGRTEIRRLAKDIDFRPRKSFGQNFVHDANTVRRIVSASGVHRHDHVLKVGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNI 115
           +LT  LL  GA  V  +E D      L    + H     NRL ++  D L +      N 
Sbjct: 61  SLTLALLDRGAH-VTAVEIDPLLAQQLPTTIADHSHSEINRLTVLNQDILTLMPSDLEN- 118

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
             P  ++ANLPYN+    L + ++     P   S+ ++ Q EV ER+ A      YG  S
Sbjct: 119 -QPTALVANLPYNVAVPALLHLLAE---FPTIRSVMVMVQAEVAERLAADPGGKDYGVPS 174

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLE---SLKKITQEAFG 231
               +         +SP VF+P P+V S ++    +   P P   +    +  +   AF 
Sbjct: 175 AKVRFYGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAFA 234

Query: 232 KRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
           +RRKT R +     G        L  A I+ + R E L+I DF R+
Sbjct: 235 QRRKTSRNAFAEWAGSGNESARRLLAASIDPSRRGETLAIADFVRL 280


>gi|291567875|dbj|BAI90147.1| dimethyladenosine transferase [Arthrospira platensis NIES-39]
          Length = 274

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 13/268 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L     L  I E++       ++EIG G G LT+ LL   A  V+ IE D
Sbjct: 5   QPRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLP-KASSVVAIEID 63

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135
           +     L     +  N L ++Q D L  D       F     P +++AN+PYNI   ++ 
Sbjct: 64  RDLCVQLAKKFGKIDNFL-LLQGDILSFDLNAHLSAFPQFQHPNKVVANIPYNITGPIIE 122

Query: 136 NWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             +     P    ++++ LL QKEVG+R+ A+ +S  +G LSV   +  +   +  +   
Sbjct: 123 GLLGTIAKPALKPFDAIVLLVQKEVGDRLCAKPSSKAFGALSVRVQYLAECDWICHVPAK 182

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            F+P PKV S V+   P     P    + L+ + +  F  RRK LR +LK      +L+Q
Sbjct: 183 AFYPPPKVDSAVVRLRPRPIASPAQNPQLLETLVKLGFSTRRKMLRNNLKSQVEPQILNQ 242

Query: 253 ----AGIETNLRAENLSIEDFCRITNIL 276
                 I   +RAE+LS++ + +++N+L
Sbjct: 243 LLETLDINPQVRAEDLSLQQWVQLSNLL 270


>gi|89898917|ref|YP_521388.1| dimethyladenosine transferase [Rhodoferax ferrireducens T118]
 gi|119365053|sp|Q223E6|RSMA_RHOFD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|89343654|gb|ABD67857.1| dimethyladenosine transferase [Rhodoferax ferrireducens T118]
          Length = 261

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 88/272 (32%), Positives = 139/272 (51%), Gaps = 20/272 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K I +K  GQ+FL D  +++ I ++ G   G  ++EIG G   LTQ L+     ++ VIE
Sbjct: 2   KHIARKRFGQHFLTDGAMIEAIVDAIGPRPGQAMVEIGPGLAALTQPLVERLG-QLTVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLF 135
            D+     L+     HP +L +I+ D LKVDF +      ++ +R++ NLPYNI T +LF
Sbjct: 61  LDRDLAARLR----AHP-QLVVIESDVLKVDFAQVAQALTTTKLRVVGNLPYNISTPILF 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + ++   +    E    + QKEV +R+ A   +  YGRLSV+  WR     +  + P  F
Sbjct: 116 HLLN---FIDVIEDQHFMLQKEVIDRMVAGPCTAAYGRLSVMLQWRYAMENVLLVPPESF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG- 254
            P P+V S V+  +PH+NP       L ++ Q AF +RRK LR +L +      L Q G 
Sbjct: 173 EPPPRVNSAVVRMVPHVNPAAVDGHLLSELVQVAFSQRRKLLRHTLGQW-----LQQKGY 227

Query: 255 ---IETNLRAENLSIEDFCRITNILTDNQDIA 283
               +   RAE + + ++  +   L  +   A
Sbjct: 228 ADEFDVQRRAEEVPVAEYLALALKLATHSQAA 259


>gi|197124132|ref|YP_002136083.1| dimethyladenosine transferase [Anaeromyxobacter sp. K]
 gi|220918912|ref|YP_002494216.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|226729750|sp|B4UDZ6|RSMA_ANASK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807855|sp|B8J7H0|RSMA_ANAD2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|196173981|gb|ACG74954.1| dimethyladenosine transferase [Anaeromyxobacter sp. K]
 gi|219956766|gb|ACL67150.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 284

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 23/290 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M +   S + +L  Y +  KK  GQNFL D  +L  IA  +    G  V+E+GAG G+LT
Sbjct: 1   MTDHYPSPRALLDRYDLRAKKSWGQNFLGDEAVLDDIARLAAPRAGDAVLELGAGLGHLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---------F 113
             LL  GAR V  +E+D+    +L+    +  +R+ +++ DA ++D+             
Sbjct: 61  ARLLARGAR-VAAVERDRDMVRVLR---GELGDRITLLEADAARLDYADLAARFGAAAAA 116

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                + ++ NLPY++ + +LF+ +              L Q+EV ER+ A   S  +G 
Sbjct: 117 GEGPRLAVVGNLPYHLTSPILFSILDQVAH---VSRAVFLLQREVAERLAAPPASRDWGV 173

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGK 232
           LSVL       ++   + P  F+P PKV S V+  +              +++ +  FG+
Sbjct: 174 LSVLLQREADVSVERIVPPGAFWPPPKVASAVLCALFRPPADAVADPARFRRLVKAGFGQ 233

Query: 233 RRKTLRQSL--KRLGGENLLH----QAGIETNLRAENLSIEDFCRITNIL 276
           RRKTLR +L   +L     L      AG++   R E L++ ++  +   L
Sbjct: 234 RRKTLRNALGSAKLADPARLEAAFAAAGVDPGRRGETLTLAEWAALERTL 283


>gi|118600867|sp|Q2GGH6|RSMA_EHRCR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 263

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 102/262 (38%), Positives = 149/262 (56%), Gaps = 8/262 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI PKK + Q F+   +I  +I   +G++   ++IEIG G G +T  +L    +K+I IE
Sbjct: 6   KINPKKELSQCFISSTHITDQIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKKLISIE 65

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           KD++   I + I  +   + E I  DAL +D      I  P+++IANLPY+I T LL  W
Sbjct: 66  KDRRLSTIHEKIVEEFQGKYEFILSDALNIDLRDI--IEPPVKVIANLPYHIATTLLIKW 123

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +  F+ S TL+FQKEV +RI AQ N+ +YG LS+L    +    M D  P +F P
Sbjct: 124 M---DYINFFTSFTLMFQKEVADRIVAQPNNKNYGTLSILIQLLSNVYKMEDFGPEIFSP 180

Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254
            PKV S+VI+ I    P        L ++ +  F +RRK +R +LK+L    + +L    
Sbjct: 181 QPKVMSSVINIIALPEPRFHVNYRKLSQVLKTTFSERRKMIRSTLKKLTNNADEMLESLN 240

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           I+ NLR ENLSIE FC+ITN +
Sbjct: 241 IDNNLRPENLSIEQFCQITNCI 262


>gi|317054978|ref|YP_004103445.1| dimethyladenosine transferase [Ruminococcus albus 7]
 gi|315447247|gb|ADU20811.1| dimethyladenosine transferase [Ruminococcus albus 7]
          Length = 286

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 142/282 (50%), Gaps = 18/282 (6%)

Query: 3   MNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+N S+   +K ++  +     K +GQNFL++ ++  +IAE   +  G  VIEIG G G 
Sbjct: 1   MDNLSNIGVIKDVMQRHGFTFSKALGQNFLVNPSVCPRIAEMGNAKAGYGVIEIGTGVGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           LT  L    A KV+ IE D +  P+L++  ++H N +++I  D +KVD  K         
Sbjct: 61  LTNELAKR-ADKVVAIEIDDRLIPVLEETLAEHDN-VKVINADVMKVDLHKLIEDEFSGM 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            + + ANLPY I + +L   +          S+T++ QKE G R+ A   +   G ++V 
Sbjct: 119 EVAVCANLPYYITSPILMMLLEQRL---RIRSVTVMVQKEAGTRLCAPLGTRDMGAVTVA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             + ++  ++F++S   F P+P V S V+ F    N            K+ + AF +RRK
Sbjct: 176 VNYFSEPKILFNVSRGSFMPAPNVDSCVVRFDIKENTPEGVTDEAFFFKMVRAAFSQRRK 235

Query: 236 TLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCR 271
           TL  S+    G +       +  +G++ N+R E L +++F R
Sbjct: 236 TLVNSVSAGLGADKQTVAAAVENSGLQANVRPEQLLMKEFVR 277


>gi|118473872|ref|YP_889677.1| dimethyladenosine transferase [Mycobacterium smegmatis str. MC2
           155]
 gi|118175159|gb|ABK76055.1| dimethyladenosine transferase [Mycobacterium smegmatis str. MC2
           155]
          Length = 297

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 119/272 (43%), Gaps = 19/272 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
                  P+K  GQNF+ D N +++I  +SG      V+E+G G G+LT  LL  GAR V
Sbjct: 2   AKEIDFRPRKAFGQNFVHDANTVRRIVSASGVHRHDHVLEVGPGLGSLTLALLDRGAR-V 60

Query: 74  IVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             +E D      L    + H     NRL ++  D L +          P  ++ANLPYN+
Sbjct: 61  TAVEIDPLLARQLPTTIADHSHSEINRLTVLNRDILTLMPGDL--EEQPTALVANLPYNV 118

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
               L + ++     P   ++ ++ Q EV ER+ A+     YG  S    +         
Sbjct: 119 AVPALLHLLAE---FPSIRTVMVMVQAEVAERLAAEPGGKDYGVPSAKVRFYGNVRRHGM 175

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLG 245
           +SP VF+P P+V S ++    +   P P      + +  +    F +RRKT R +     
Sbjct: 176 VSPTVFWPIPRVYSGLVRIDRYETSPWPMDEAFRDEVFNLIDIGFAQRRKTSRNAFAEWA 235

Query: 246 G-----ENLLHQAGIETNLRAENLSIEDFCRI 272
           G        L  A I+   R E LSI DF R+
Sbjct: 236 GGGNESAERLLAARIDPARRGETLSINDFVRL 267


>gi|329941211|ref|ZP_08290490.1| dimethyladenosine transferase [Streptomyces griseoaurantiacus M045]
 gi|329299742|gb|EGG43641.1| dimethyladenosine transferase [Streptomyces griseoaurantiacus M045]
          Length = 302

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 127/291 (43%), Gaps = 26/291 (8%)

Query: 3   MNNKSHS--------LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEI 54
           M+N S S        ++ +     + P K  GQNF++D N +++I  ++       V+E+
Sbjct: 1   MSNPSPSDALLGAADIRELAGVLGVRPTKQRGQNFVIDANTVRRIVRTAEVRPADVVVEV 60

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFE 110
           G G G+LT  LL   A +V  +E D      L            +R  ++  DAL+V   
Sbjct: 61  GPGLGSLTLALLE-AADRVTAVEIDDVLAGALPATVAARMPGRADRFALVHSDALRVTE- 118

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
                 +P  ++ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  
Sbjct: 119 --LPGPAPTALVANLPYNVAVPVLLHMLDT---FPSIERTLVMVQAEVADRLAAGPGSKV 173

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQE 228
           YG  SV   W  +      I  +VF+P+P V S ++       P+        +  +   
Sbjct: 174 YGVPSVKANWYAEVRRAGSIGRNVFWPAPNVDSGLVSLTRRAEPVKTTAAKAEVFAVVDA 233

Query: 229 AFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           AF +RRKTLR      +      E  L  AG+    R E L++E+F RI  
Sbjct: 234 AFAQRRKTLRAALAGWAGSAAAAEAALVAAGVPPQARGEALTVEEFARIAE 284


>gi|238758993|ref|ZP_04620164.1| Dimethyladenosine transferase [Yersinia aldovae ATCC 35236]
 gi|238702804|gb|EEP95350.1| Dimethyladenosine transferase [Yersinia aldovae ATCC 35236]
          Length = 232

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G G LT+ +       + VIE D+     L     Q  ++L I Q+DA+K++F 
Sbjct: 1   MVEIGPGLGALTEPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKINFS 58

Query: 111 KFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
           +        +R+  NLPYNI T L+F+  S          +  + QKEV  R+ A  NS 
Sbjct: 59  ELAEQAGQSLRVFGNLPYNISTPLMFHLFSYTNA---IHDMHFMLQKEVVNRLVAGPNSK 115

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQ 227
            YGRL+V+  +      + ++ P  F P+PKV S V+  IPH+N P P   +  L +IT 
Sbjct: 116 AYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITT 175

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +AF +RRKT+R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 176 QAFNQRRKTVRNSLGDLFTSEQLIELGIDPILRAENISVAQYCKLANWLS 225


>gi|315656046|ref|ZP_07908944.1| dimethyladenosine transferase [Mobiluncus curtisii ATCC 51333]
 gi|315490110|gb|EFU79737.1| dimethyladenosine transferase [Mobiluncus curtisii ATCC 51333]
          Length = 309

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 144/297 (48%), Gaps = 34/297 (11%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  +  + +  ++ P K  GQNF+ D   +++IA ++G   G TV+EIG G G+LT  LL
Sbjct: 6   ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKV----DFEKFFNISSPI 119
            LG  KVI IE DQ+    L    +QH      L ++  DAL++    D E     ++P 
Sbjct: 66  ELGC-KVIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLEIPAGWAAPH 124

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R++ANLPYN+ T LL +++      P  ES  ++ Q EV +R  A      YG  SV   
Sbjct: 125 RLVANLPYNVATPLLLHFLE---VLPNLESALVMVQAEVADRWVAGVADDAYGAPSVKLA 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFI------PHLNPIPCCLESL----------- 222
           W  +    F +  +VF+P P V STV+ F            +   LE+L           
Sbjct: 182 WWGRTKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLREDLKLDLENLTDEAIETLRQE 241

Query: 223 -KKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRIT 273
                  AF +RRKTLRQSL    G       LL  AGI   LRAE LS+ DF +I 
Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPDAAAVLLESAGIIPGLRAERLSVTDFTKIA 298


>gi|189182934|ref|YP_001936719.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Ikeda]
 gi|189179705|dbj|BAG39485.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Ikeda]
          Length = 273

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 98/276 (35%), Positives = 152/276 (55%), Gaps = 15/276 (5%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLL 66
            ++   +  +KI   K +GQ+FLLD NI  KI   +   + G  V+E+G GPG LT+ +L
Sbjct: 5   PTVSQHMKLHKITANKSLGQHFLLDSNICNKIVSVAPNPITGKVVLEVGPGPGGLTRAIL 64

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
               +K+IVIEKD  F  +L +I +   ++LE+I  DAL  D       S+ I II+NLP
Sbjct: 65  AHNPKKLIVIEKDASFIELLHEIPTMPSSKLEVICGDALNFDLSNI--ESNRIIIISNLP 122

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNIGT+L+  W+       F E + ++ Q EV ERIT+  +S  YGR++VL    +    
Sbjct: 123 YNIGTQLIVQWLHQ---ISFVEYMIIMLQDEVVERITSPHSSKMYGRITVLAQIVSDVRK 179

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLG 245
            F +S   F P PKV S+V+   P  + +    +E+++KIT+ AF  RRK L+  L  L 
Sbjct: 180 CFKVSSRAFNPPPKVDSSVMLVSPKKHQLDRNTIENVQKITKLAFSTRRKKLKNCLSHLL 239

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 + +L+    + + R E L+ E + +++ IL
Sbjct: 240 KSINITDEILNA---QLHQRPEQLTPEQYVQLSRIL 272


>gi|326797450|ref|YP_004315269.1| ribosomal RNA small subunit methyltransferase A [Sphingobacterium
           sp. 21]
 gi|326548214|gb|ADZ76599.1| Ribosomal RNA small subunit methyltransferase A [Sphingobacterium
           sp. 21]
          Length = 270

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 124/263 (47%), Gaps = 10/263 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  KK++GQ+FL D N  K+I  +     G   V+E+G G G L+  LL     +  +I+
Sbjct: 14  VRAKKHLGQHFLTDKNTAKRIVNALRPEKGFDKVLEVGPGMGILSDFLLEDKRFESWLID 73

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    LK        RL  I  D L +DF   F    P+ II N PYNI +++LF  
Sbjct: 74  LDIESVEFLKTKYPSLDKRL--IHGDFLLLDFASVF--PGPLAIIGNFPYNISSQILFKV 129

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +           L  +FQKEV ER  A+     YG LSV          +F +    F P
Sbjct: 130 LEHR---HQVIELVGMFQKEVAERCAAKPGGKDYGILSVFLQAYYDIAYLFTVKAGAFNP 186

Query: 198 SPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI    +  + + C     +KI +  F +RRKTLR +L  +  +  +      
Sbjct: 187 PPKVLSGVIRLERNSIDRLACNENLFQKIVKAGFNQRRKTLRNALSVIADKARMPNHPF- 245

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            +LRAE LS++DF  +TN +  +
Sbjct: 246 LDLRAERLSVDDFIELTNEIEKS 268


>gi|68171878|ref|ZP_00545205.1| RRNA 16S rRNA dimethylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658336|ref|YP_507457.1| dimethyladenosine transferase [Ehrlichia chaffeensis str. Arkansas]
 gi|67998701|gb|EAM85426.1| RRNA 16S rRNA dimethylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599793|gb|ABD45262.1| dimethyladenosine transferase [Ehrlichia chaffeensis str. Arkansas]
          Length = 277

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 102/262 (38%), Positives = 149/262 (56%), Gaps = 8/262 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI PKK + Q F+   +I  +I   +G++   ++IEIG G G +T  +L    +K+I IE
Sbjct: 20  KINPKKELSQCFISSTHITDQIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKKLISIE 79

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           KD++   I + I  +   + E I  DAL +D      I  P+++IANLPY+I T LL  W
Sbjct: 80  KDRRLSTIHEKIVEEFQGKYEFILSDALNIDLRDI--IEPPVKVIANLPYHIATTLLIKW 137

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +  F+ S TL+FQKEV +RI AQ N+ +YG LS+L    +    M D  P +F P
Sbjct: 138 M---DYINFFTSFTLMFQKEVADRIVAQPNNKNYGTLSILIQLLSNVYKMEDFGPEIFSP 194

Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254
            PKV S+VI+ I    P        L ++ +  F +RRK +R +LK+L    + +L    
Sbjct: 195 QPKVMSSVINIIALPEPRFHVNYRKLSQVLKTTFSERRKMIRSTLKKLTNNADEMLESLN 254

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           I+ NLR ENLSIE FC+ITN +
Sbjct: 255 IDNNLRPENLSIEQFCQITNCI 276


>gi|296118236|ref|ZP_06836817.1| dimethyladenosine transferase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968794|gb|EFG82038.1| dimethyladenosine transferase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 280

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 139/282 (49%), Gaps = 18/282 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+       ++ +     + P K  GQNFL D N +++I  ++   D   V+E+G G G+
Sbjct: 1   MSKLLGPVEIRNLAEKLDVSPTKKWGQNFLHDPNTIRRIVAAADLTDDDHVVEVGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           LT  LL   A  V  +E D +    L    +  + +H ++L ++  DAL++D E+     
Sbjct: 61  LTLGLLDEAAH-VTAVEIDPRLAGELPATVQWRAPEHVDKLTLLHKDALRIDGEEL---G 116

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           +P  ++ANLPYN+   +L + +      P  + + ++ Q EV +R+ A   S  YG  SV
Sbjct: 117 TPTALVANLPYNVAVPVLLHILE---LYPSLQRVLVMVQLEVADRLAADPGSKIYGVPSV 173

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
              +        +I  HVF+P+P + S ++    +  P     + L  +   AF +RRKT
Sbjct: 174 KASFYGNVRKAGNIGKHVFWPAPNIESGLVRIDLY--PPRERPKKLWPLIDAAFAQRRKT 231

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           LR +L    G     E  L +AGIE  LR E +SI+DF R+ 
Sbjct: 232 LRAALSGFYGSGAAAEQALREAGIEPTLRGEKISIDDFLRLA 273


>gi|21357273|ref|NP_648499.1| mitochondrial transcription factor B1 [Drosophila melanogaster]
 gi|74870888|sp|Q9VTM5|TFB1M_DROME RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; AltName:
           Full=d-mtTFB1; Flags: Precursor
 gi|17862606|gb|AAL39780.1| LD40326p [Drosophila melanogaster]
 gi|23093638|gb|AAF50022.2| mitochondrial transcription factor B1 [Drosophila melanogaster]
 gi|220946184|gb|ACL85635.1| mtTFB1-PA [synthetic construct]
 gi|220955884|gb|ACL90485.1| mtTFB1-PA [synthetic construct]
          Length = 330

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 19/293 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64
              +++ ++  Y++  +K + QNFL+D  +  KI +S+G       V+E+G GPG +T+ 
Sbjct: 17  PMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPRDLVLEVGPGPGGITRS 76

Query: 65  LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIR 120
           +L    ++++++EKD +F     +LK+ +S    + +I  DD L+ + E+   + S  I 
Sbjct: 77  ILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNIEQHIPDTSQRIH 136

Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +I NLP+ I TRLL NW+         +      +TL FQ+EV ERI A        RLS
Sbjct: 137 LIGNLPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLS 196

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234
           V++   T+  M F I    F P P+V   V+  IP   P        ++++ +  F  R+
Sbjct: 197 VMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRHIFSMRQ 256

Query: 235 KTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           K  R+    L          E L  +A ++  LR   L++E   R+  + +++
Sbjct: 257 KYCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCLRLAEVYSEH 309


>gi|94986964|ref|YP_594897.1| dimethyladenosine transferase [Lawsonia intracellularis PHE/MN1-00]
 gi|118600874|sp|Q1MR01|RSMA_LAWIP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94731213|emb|CAJ54575.1| rRNA (adenine-N6,N6)-dimethyltransferase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 271

 Score =  241 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 129/260 (49%), Gaps = 10/260 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             PKK +GQ+FL D  I  +I +     +G  + EIG G G LT+ +      +++++EK
Sbjct: 5   FRPKKSLGQHFLKDTAIAYRIVKLLDIHEGENIFEIGPGQGALTRHIYGYNPGQLLLVEK 64

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D  +      +  Q+ +++ I   DALK  +E         ++I+NLPYN+G+ L+++ +
Sbjct: 65  DSCWVDYHSSVKQQNVSKVTIHHLDALKFSWETL---CGSWKVISNLPYNVGSALIWDIV 121

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S             + QKEV +R+ A   +  YG LSV      K    F + PH F+P 
Sbjct: 122 SRVQ---SMSRAVFMVQKEVADRLCACPGTKSYGVLSVWVQSFAKVEWGFIVKPHSFYPQ 178

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAG 254
           PKV S ++   P      P   ++   I ++ F  RRK ++  L+++G  N    L + G
Sbjct: 179 PKVDSAIVTLYPKPREEQPKNSKTFAWIIKQCFQHRRKQMQSILRKIGFLNYYESLERIG 238

Query: 255 IETNLRAENLSIEDFCRITN 274
           I  + R E+LS + F +++ 
Sbjct: 239 ISPSARPESLSNQLFQQLSQ 258


>gi|15827037|ref|NP_301300.1| dimethyladenosine transferase [Mycobacterium leprae TN]
 gi|221229515|ref|YP_002502931.1| dimethyladenosine transferase [Mycobacterium leprae Br4923]
 gi|27151599|sp|Q9CD52|RSMA_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807875|sp|B8ZU59|RSMA_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|13092584|emb|CAC29749.1| putative dimethyladenosine transferase [Mycobacterium leprae]
 gi|219932622|emb|CAR70334.1| putative dimethyladenosine transferase [Mycobacterium leprae
           Br4923]
          Length = 306

 Score =  241 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 19/291 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ ++   +  P+K +GQNF+ D N ++++  +S       V+E+G G G+LT  LL
Sbjct: 16  RTEIRWLVKELECRPRKSLGQNFVHDANTVRRVVSTSRVNRSDFVLEVGPGFGSLTLALL 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  IE D      L    ++H N    RL +   D L          + P  ++
Sbjct: 76  DCGA-AVSAIEIDPVLAGRLPQTVAEHSNNEIHRLTVCNRDVLSFRRGDLA--TEPTALV 132

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L + ++     P   ++T++ Q EV ER+ A+     YG  SV   +  
Sbjct: 133 ANLPYNVAVPALLHLLAE---FPSIRTVTVMVQAEVAERLAAEPGGKDYGVPSVKLSFFG 189

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLR 238
           +      +SP VF+P P+V S ++    +        ++ ++    +   AF +RRKT R
Sbjct: 190 RVRRCGMVSPTVFWPIPRVYSGLVRVDRYATSPWPTDDAFRRQVFELVDIAFTQRRKTSR 249

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284
            +  +  G      N L  A I+   R E LSI+DF R+        D A+
Sbjct: 250 NAFVKWAGSSNESANRLLAASIDPARRGETLSIDDFVRLLRRSDGRDDAAV 300


>gi|304382942|ref|ZP_07365424.1| dimethyladenosine transferase [Prevotella marshii DSM 16973]
 gi|304335967|gb|EFM02215.1| dimethyladenosine transferase [Prevotella marshii DSM 16973]
          Length = 280

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/274 (31%), Positives = 142/274 (51%), Gaps = 15/274 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL+I ++IA++  +   + ++E+G G G LTQ L+T   R+V V+E 
Sbjct: 4   VRPKKHLGQHFLTDLDIARRIADTVDACPRLPILEVGPGMGMLTQFLVT-KERQVRVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L        +  +I+++D L+++ +K FN   P  +  N PY+I +++ F  +
Sbjct: 63  DREAATYLHKHFPLMHD--DILREDFLRMNLQKVFN-GQPFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  R+ A + +  YG LSVL         +F +   VF P 
Sbjct: 120 DNKDLIP---CCTGMIQREVALRMAATEGNKTYGILSVLMQAWYDVEYLFTVDETVFNPP 176

Query: 199 PKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    + +  + C     ++I +  FG+RRK LR SL+++        A  + 
Sbjct: 177 PKVKSAVIRMTRNGVTDLGCDERLFRRIVKAVFGQRRKMLRVSLRQIFSSIPASPAFYDR 236

Query: 258 ---NLRAENLSIEDFCRITNI----LTDNQDIAI 284
                R E LSI  F  +TN+    L   +D+A+
Sbjct: 237 DIMTRRPEQLSIPQFVELTNLVEAELRQLRDVAV 270


>gi|258592924|emb|CBE69233.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [NC10 bacterium
           'Dutch sediment']
          Length = 312

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 18/283 (6%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           H  + +L  Y ++PK+ +GQ+FL+   +   I  ++       V+EIG G G LT+ L  
Sbjct: 15  HETRALLRQYHLLPKRGLGQSFLVSPTVRDLILRAADVGPQDLVVEIGPGTGVLTEGLAE 74

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIA 123
             A ++I IE+D     +L +     P  + +I  DAL+ DF        P     ++++
Sbjct: 75  Q-AGRLIAIERDPGLHRLLAERLGDRP-TVSLICGDALEFDFVNVCGTMCPAYTRAKLVS 132

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY++ T L+   I    +  F   +    Q+EV +R+ A      Y  L++   +   
Sbjct: 133 NLPYSVATPLILQLIPLQRYFSFLLVMV---QREVAQRLLASPGEEGYSALTLRCRYEAD 189

Query: 184 ATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            + +  +    F+P P V ST++    +P           L +I + AFG+RRK LR +L
Sbjct: 190 VSAVAQVPRTAFYPKPAVDSTLVRLDLLPGPKVTVHSPGLLFRIVRAAFGQRRKMLRNAL 249

Query: 242 KRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
              G        + +L  AGI+   R E L++++F ++ + L 
Sbjct: 250 LNAGIMTEPADLDRILADAGIDPKRRGETLNLDEFAQLADRLY 292


>gi|56416752|ref|YP_153826.1| dimethyladenosine transferase [Anaplasma marginale str. St. Maries]
 gi|222475116|ref|YP_002563532.1| dimethyladenosine transferase (ksgA) [Anaplasma marginale str.
           Florida]
 gi|255003096|ref|ZP_05278060.1| dimethyladenosine transferase [Anaplasma marginale str. Puerto
           Rico]
 gi|255004222|ref|ZP_05279023.1| dimethyladenosine transferase [Anaplasma marginale str. Virginia]
 gi|62900476|sp|Q5PAV9|RSMA_ANAMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807856|sp|B9KIG4|RSMA_ANAMF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56387984|gb|AAV86571.1| dimethyladenosine transferase [Anaplasma marginale str. St. Maries]
 gi|222419253|gb|ACM49276.1| dimethyladenosine transferase (ksgA) [Anaplasma marginale str.
           Florida]
          Length = 270

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/270 (35%), Positives = 153/270 (56%), Gaps = 9/270 (3%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +   +    K +GQNF+LD ++ +KI   +GS++G  +IE+G G G +T+++L      +
Sbjct: 1   MRTIRHKAYKSLGQNFILDPSMAEKIVSYAGSIEGYNIIEVGPGFGTMTEIILRSKVASL 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           + IEKD++  P+ K +  ++PN    I+ D L+++ E    IS+P ++IANLPYNI   L
Sbjct: 61  LAIEKDRRLSPMHKGLMQKYPN-YRYIEHDVLEINLETM--ISAPSKMIANLPYNISVIL 117

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   +    +   +E LTL+FQKEV ER+ A+  +  Y  LSVL         + D+ P 
Sbjct: 118 LLRMLK---YIHNFEKLTLMFQKEVAERLVAKPGTKSYSILSVLVQLLCDVEKVKDLQPG 174

Query: 194 VFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK--RLGGENLL 250
            F P PKV S+V++  P  N   P     + K+ ++AFG +RKT+R +L       + LL
Sbjct: 175 AFSPPPKVCSSVVNITPLGNLRFPVDYSYMLKMLKKAFGCKRKTVRNALGLPHQEFDALL 234

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +  I  ++RAENLS+E  C ++N L   Q
Sbjct: 235 AECRIPPSVRAENLSVEQLCAVSNFLQSRQ 264


>gi|113474554|ref|YP_720615.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101]
 gi|110165602|gb|ABG50142.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101]
          Length = 281

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 135/270 (50%), Gaps = 13/270 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P+K   Q++LL    L KI +++   +   ++EIG G G LT  LL L A  V+ +E 
Sbjct: 3   IQPRKRFAQHWLLSDKALNKIIQAAELSESDRILEIGPGTGVLTHRLLPLAA-SVVAVEI 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLL 134
           D+     L     +  N L ++Q D L +D E    +F    +P +++AN+PYNI   +L
Sbjct: 62  DRDLCQKLVKKFGRVKNFL-LLQGDILSLDLETNLAQFIGFQNPHKVVANIPYNITGLIL 120

Query: 135 FNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
              +   + P    ++ + LL QKEV +RI A+ +S  Y  LSV   +  K   + D+  
Sbjct: 121 EKLLGTISQPLTNTYDLIVLLLQKEVADRICAKPDSKAYSSLSVKIQYLAKCEFICDVPA 180

Query: 193 HVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248
             F+P PKV S VI   P L  P     + ++ + +  F  +RK LR +LK +   +   
Sbjct: 181 KAFYPPPKVDSAVIRLRPQLIEPQANNPKQMEMLVKLGFASKRKMLRNNLKAVVERDRLF 240

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNILT 277
            LL    +    RAE+L+++++  + N L 
Sbjct: 241 ELLENLKVNPQSRAEDLTVQEWVTLANSLE 270


>gi|113953175|ref|YP_730799.1| dimethyladenosine transferase [Synechococcus sp. CC9311]
 gi|123031699|sp|Q0I9S3|RSMA_SYNS3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|113880526|gb|ABI45484.1| dimethyladenosine transferase [Synechococcus sp. CC9311]
          Length = 277

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 129/275 (46%), Gaps = 11/275 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++L++  +L +I E++   DG  V+E+G G G LT+ LL   A  +  +E
Sbjct: 5   GHTARKRFGQHWLINERVLDRIVEAAELQDGDRVLEVGPGRGALTERLLASAAAAIHAVE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   + HP +  + + D L V  E         +++AN+PYNI   LL   
Sbjct: 65  LDRDLVAGLQQTFASHP-KFSLQEGDVLSVPLE-LSGGVPANKVVANIPYNITGPLLDRL 122

Query: 138 ISADTWPPFW--ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           I     P  +  + L LL Q EV +RI A+    ++  LSV      + + +  + P  F
Sbjct: 123 IGRLDRPVDFSYQRLVLLVQHEVAQRIRARPGHSNFSALSVRMQLLGRCSHVCPVPPRCF 182

Query: 196 FPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL-- 250
            P PKV S VI      P   P       ++++ + AF  RRK LR +L  +G  +LL  
Sbjct: 183 QPPPKVQSEVICIDPFPPERRPTAALSRGVERLLKMAFLSRRKMLRNTLAPVGSTDLLQS 242

Query: 251 --HQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
              +AGI    R ++++ E +  +   L     +A
Sbjct: 243 LAEEAGISLQQRPQDVAPEAWVALAKGLNQVDSVA 277


>gi|121606957|ref|YP_984286.1| dimethyladenosine transferase [Polaromonas naphthalenivorans CJ2]
 gi|166221686|sp|A1VUN7|RSMA_POLNA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|120595926|gb|ABM39365.1| dimethyladenosine transferase [Polaromonas naphthalenivorans CJ2]
          Length = 279

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 131/276 (47%), Gaps = 26/276 (9%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K I +K  GQ+FL D  I++ I E+   L G  ++EIG G   +T+ L+      + VIE
Sbjct: 2   KHIARKRFGQHFLTDRLIIEGIVEAIAPLPGQPMVEIGPGLAAMTRPLVERLGH-LTVIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----------------SSPIRI 121
            D+     L+        +L +I+ D L+VDF +                       +R+
Sbjct: 61  LDRDLARQLR-----SNPQLTVIESDVLRVDFLQLAEQVQSAGALRGAASQTPSPCKLRV 115

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           + NLPYNI T +LF+ + A       E    + QKEV +R+ A  ++  YGRLSV+  WR
Sbjct: 116 VGNLPYNISTPILFHLLDAVE---VIEDQHFMLQKEVIDRMVAMPSTSDYGRLSVMLQWR 172

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
                +  + P  F P P+V S ++  +PH  P    ++ L ++ + AF +RRK LR +L
Sbjct: 173 YAMENVLYVPPQSFDPPPRVDSAIVRMVPHAEPARLDVKLLSELVRVAFSQRRKLLRHTL 232

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            +   ++       +   RAE + + ++  +   + 
Sbjct: 233 GQWLEQHAFSG-EFDVKRRAEEVPVAEYLALAQQVQ 267


>gi|307718556|ref|YP_003874088.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6192]
 gi|306532281|gb|ADN01815.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6192]
          Length = 283

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 135/287 (47%), Gaps = 17/287 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    ++ +++ + +   K  GQ+FL+  ++L +I ++     G  V EIG G G 
Sbjct: 1   MGETSYPIRMRELMARHGLSALKRFGQHFLVRDDVLGRIVQALDLHPGEQVWEIGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  LL  G  +V+  E D+ F  IL++     P  L I++ D  +  +   +    P R
Sbjct: 61  LTAHLLDEGV-EVVGFEIDRGFVSILREEFGGAP--LTIVEGDV-RDTWRTVYATRVPHR 116

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ NLPYN+ T ++ +++      P       + QKEV ER+ A   S  YG LSV+   
Sbjct: 117 VVGNLPYNVATSIILDFLEGGLIVPQ----VFMVQKEVAERMAASVGSSAYGALSVIVAT 172

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQ 239
             +  ++F + P  F P PKV S+V+   P  +P+P   +        + F  RRK L+ 
Sbjct: 173 FYRCELLFHVPPTAFHPRPKVWSSVLRLHPVASPVPREHIPPFLSFVWDLFRYRRKMLKN 232

Query: 240 SLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L R         G  +LL + GI+  LRAE L ++    +     +
Sbjct: 233 VLLRSPLAARGVEGVVSLLERVGIDPTLRAEQLPLDRIHALWKEWKE 279


>gi|27904634|ref|NP_777760.1| dimethyladenosine transferase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|29839464|sp|P59524|RSMA_BUCBP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|27904031|gb|AAO26865.1| dimethyladenosine transferase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 260

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/266 (31%), Positives = 129/266 (48%), Gaps = 11/266 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +        K +GQNFL+D  ++ +I           +IEIG G G LT  +  +   K+
Sbjct: 2   VKKNTFFANKNLGQNFLVDSEVINRIINVINPKSHDFMIEIGPGLGALTYPICKIL-HKL 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTR 132
            VIE D      L    S     +E+  +D LK +F    N S   +RII NLPYNI   
Sbjct: 61  FVIEHDNNLGTRLLKDIS----NIEVFVEDVLKFNFLNLINNSFKSVRIIGNLPYNISIP 116

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +LF              +  +FQKEV  ++ A   +  Y RLS++  +      +FD+  
Sbjct: 117 ILFYLFKFHNN---IIDMNFMFQKEVASKLLAIPGTKSYSRLSIIAQYYCDIDFLFDVVA 173

Query: 193 HVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             F+P PKVTS+ +  +P    N     +  L  +T  AF +RRK ++ SL  L  ++ L
Sbjct: 174 QSFYPIPKVTSSFVRLVPRKVFNLYVRDINQLSNVTALAFQQRRKIVKNSLSSLFNDDAL 233

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
            + GI+  LRAENLS++ +C ++N +
Sbjct: 234 RKLGIDPLLRAENLSVKQYCLLSNHV 259


>gi|222100031|ref|YP_002534599.1| Dimethyladenosine transferase [Thermotoga neapolitana DSM 4359]
 gi|254808100|sp|B9K8F0|RSMA_THENN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|221572421|gb|ACM23233.1| Dimethyladenosine transferase [Thermotoga neapolitana DSM 4359]
          Length = 260

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 133/262 (50%), Gaps = 18/262 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  Y I  KK++GQ FL D  I K+I + +       V+EIGAG G LT+ L   GAR V
Sbjct: 7   LKKYGIRLKKHLGQVFLSDDRIAKRIVKEADLKPDDVVVEIGAGAGTLTEELAKTGAR-V 65

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           I  E D+   PIL++  S++PN +E+  +D LK       ++      ++N+PY++   +
Sbjct: 66  IAYEIDEGLAPILQERLSKYPN-VELRFEDFLK-----ARDVPEEAICVSNIPYSVTGPI 119

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +   I        ++   ++ QKEVGERI ++     YG LSV+     +   +FD+S  
Sbjct: 120 MEKIIEWR-----FKKAIVMVQKEVGERILSKPGRKSYGYLSVVVQTFYEVRKLFDVSRS 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P+P+V S V+        +       KK     F K+RKTL+ +L+      +    
Sbjct: 175 YFVPNPEVDSVVVEMKRKA--VEIDFPQFKKFVSMIFSKKRKTLKNNLRPFLS--VFE-- 228

Query: 254 GIETNLRAENLSIEDFCRITNI 275
           G++ + RAE LSIE+   + NI
Sbjct: 229 GVDLSRRAEQLSIEEIIELYNI 250


>gi|172040243|ref|YP_001799957.1| dimethyladenosine transferase [Corynebacterium urealyticum DSM
           7109]
 gi|171851547|emb|CAQ04523.1| dimethyladenosine transferase [Corynebacterium urealyticum DSM
           7109]
          Length = 366

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 32/289 (11%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     + P K +GQNF+ D N ++KI  ++       VIE+G G G+LT  LL  
Sbjct: 67  EIRQLAEELGVNPTKKLGQNFVHDPNTVRKILHAADVGPQDHVIEVGPGLGSLTLALLG- 125

Query: 69  GARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNIS--SPIRII 122
              +V  IE D      L    ++H     ++L +I  DALKV    +      +P  ++
Sbjct: 126 AVGEVTAIEIDPLLAGRLPRTVAEHAAPVADKLHLILRDALKVTAADWAEQGLAAPTALV 185

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P    + ++ Q EV +R+ A+  S  YG  SV   +  
Sbjct: 186 ANLPYNVSVPVLLHLLEQ---FPTISRVLVMVQLEVADRLAAKPGSKIYGVPSVKARYFG 242

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESL--------------KKI 225
                  I  +VF+P+PKV S ++          P     E++                +
Sbjct: 243 DTFRAATIGKNVFWPAPKVDSGLVRIDRWGVGDKPAAPWAEAVASSGFAEEVVRGETFAL 302

Query: 226 TQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDF 269
              AF +RRKTLR +L    G     E++L  AGI+   R E L  E+F
Sbjct: 303 ADAAFLQRRKTLRAALSGHFGGGQQAEDVLRAAGIDPKQRGEKLGAEEF 351


>gi|29830130|ref|NP_824764.1| dimethyladenosine transferase [Streptomyces avermitilis MA-4680]
 gi|33516923|sp|Q82HC3|RSMA_STRAW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|29607240|dbj|BAC71299.1| putative dimethyladenosine transferase [Streptomyces avermitilis
           MA-4680]
          Length = 295

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 131/289 (45%), Gaps = 19/289 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++G      V+E+G G G+LT  LL
Sbjct: 12  PADIRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPDDVVVEVGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +VI +E D      L         +   R  ++  DA+ V   +      P  ++
Sbjct: 72  E-AADRVIAVEIDDVLAGALPATIAARMPERAERFALVHSDAMHV---RELPGPPPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 128 ANLPYNVAVPVLLHMLDT---FPSIERTLVMVQAEVADRLAADPGSRVYGVPSVKANWHA 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR-- 238
           +      I  +VF+P+P V S ++  +    PI        +  +   AF +RRKTLR  
Sbjct: 185 EVKRAGSIGRNVFWPAPNVDSGLVSLVRRTEPIKTTASKTEVFAVVDAAFAQRRKTLRAA 244

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT-NILTDNQDIA 283
               +      E  L  AG+    R E+L++E+F RI  N   D+ D A
Sbjct: 245 LAGWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAENRGADHADDA 293


>gi|167038515|ref|YP_001666093.1| dimethyladenosine transferase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256751385|ref|ZP_05492264.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320116911|ref|YP_004187070.1| dimethyladenosine transferase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166857349|gb|ABY95757.1| dimethyladenosine transferase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256749767|gb|EEU62792.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319930002|gb|ADV80687.1| dimethyladenosine transferase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 273

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 139/264 (52%), Gaps = 16/264 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            GQNF+ D NIL KI  +SG      V+EIG G G LT+ L     +KV+  E D++ + 
Sbjct: 12  WGQNFIFDKNILAKIVIASGVAPEDFVLEIGTGLGTLTEELAKR-VKKVVSFEIDRELYE 70

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISAD 141
             K+  + + N + I+ +D +K D  +  N      P +++ANLPY I + ++   +   
Sbjct: 71  ATKEKLNIY-NNVIIMNEDIMKADLNRIANEYFEGKPFKVVANLPYYITSPIIMMLLECK 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
               F + +T+L QKEV ERI A   +  YG L+V   ++ K  ++F++ P VF P PKV
Sbjct: 130 ----FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKILFNLPPSVFVPPPKV 185

Query: 202 TSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----G 254
            S+++       P+    +      + + AFG+RRK L  +LK LG  + ++ +A     
Sbjct: 186 DSSLVKLEILDKPLVEVKDEALFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSN 245

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           +    R E LSIE+F  + N++ D
Sbjct: 246 LSHQRRGETLSIEEFTALANVIYD 269


>gi|88808454|ref|ZP_01123964.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. WH 7805]
 gi|88787442|gb|EAR18599.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. WH 7805]
          Length = 280

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 126/275 (45%), Gaps = 11/275 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              P+K  GQ++L D  +L +I ++S       V+E+G G G LTQ LL   A  V  +E
Sbjct: 5   GHSPRKRFGQHWLRDERVLDQILDASELGSDDRVLEVGPGRGALTQRLLASTAAAVHAVE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+D  +  P +  + + D L+V      +     +++AN+PYNI   LL   
Sbjct: 65  LDRDLVAGLQDRFADSP-QFSLREGDVLEVPL-TLPDGQRATKVVANIPYNITGPLLERL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           I     P  P ++ L LL QKEV ERI A+  +  +  LSV        + +  + P  F
Sbjct: 123 IGRLDQPIDPPYQRLVLLVQKEVAERIRARPGASSFSALSVRMQLLAHCSSVCSVPPRCF 182

Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----EN 248
            P PKV S VI   P      P P     ++ + ++AF  RRK LR +L         E 
Sbjct: 183 QPPPKVHSEVIRLDPLPQEQRPDPVTCRRVECLLKQAFLARRKMLRNTLSVSQPLCELEE 242

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           +  +AGI+   R + ++   + ++   L      A
Sbjct: 243 ITLKAGIDLRQRPQEVAPNAWVKLARGLNQADSAA 277


>gi|302560209|ref|ZP_07312551.1| dimethyladenosine transferase [Streptomyces griseoflavus Tu4000]
 gi|302477827|gb|EFL40920.1| dimethyladenosine transferase [Streptomyces griseoflavus Tu4000]
          Length = 296

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++G     TV+E+G G G+LT  LL
Sbjct: 12  PADVRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPDDTVVEVGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQF----FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V  +E D          +         R  ++  DA+ V         +P  ++
Sbjct: 72  E-AADRVTAVEIDDVLAAALPATVAARMPARAGRFALVHSDAMHVTE---LPGPAPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + + +    P  E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 128 ANLPYNVAVPVLLHMLES---FPSIERTLVMVQSEVADRLAAAPGSKVYGVPSVKANWYA 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR-- 238
           +      I  +VF+P+P V S ++  +    P         +  +   AF +RRKTLR  
Sbjct: 185 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPPKTTASRREVFAVVDAAFAQRRKTLRAA 244

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
               +      E  L  AG+    R E+L++E+F RI  
Sbjct: 245 LAGWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAE 283


>gi|170043732|ref|XP_001849529.1| mitochondrial dimethyladenosine transferase 1 [Culex
           quinquefasciatus]
 gi|167867055|gb|EDS30438.1| mitochondrial dimethyladenosine transferase 1 [Culex
           quinquefasciatus]
          Length = 345

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 29/306 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ ++  YK+   K + QNFL+D  +  KI +++G++    V+E+G GPG++T+ +
Sbjct: 19  PLPTIRDLVRLYKLRAIKQLSQNFLMDERLTNKIVKAAGNITDHHVLEVGPGPGSITRSI 78

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISS------ 117
           +    R ++V+EKD++F P L+ +S       R++I++ D L+   E+ F          
Sbjct: 79  IRKAPRHLVVVEKDRRFLPTLELLSEASAGFLRMDIVRGDILQFQTEQAFPDCPRQEWHD 138

Query: 118 ---PIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSP 169
              P+ II NLP+ I TRLL NW+      +  W     SLTL FQKEV ERI A   S 
Sbjct: 139 KRAPVHIIGNLPFAISTRLLINWLHEMSTRSGAWSFGRSSLTLTFQKEVAERIVAPILSE 198

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQE 228
              RLSV+    ++  + F I    F P P V   V+  +P  NP+       ++K+ + 
Sbjct: 199 RRCRLSVMNQIWSRPELKFIIPGKAFVPKPDVDVGVVTIVPLKNPLTTVPFPVVEKVVRH 258

Query: 229 AFGKRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNI----L 276
            F  R+K  R+ +  L    L           A ++   R+  LS E+  RI       +
Sbjct: 259 IFSMRQKYCRRGVANLYPPELRDELTELTFKIADVDPLARSFQLSTEECLRIVEAYDRLV 318

Query: 277 TDNQDI 282
            ++ DI
Sbjct: 319 QEHPDI 324


>gi|116750733|ref|YP_847420.1| dimethyladenosine transferase [Syntrophobacter fumaroxidans MPOB]
 gi|116699797|gb|ABK18985.1| dimethyladenosine transferase [Syntrophobacter fumaroxidans MPOB]
          Length = 285

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 14/283 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              + +         P+K  GQ+FL      ++I   +      TV+EIG G G LT+ +
Sbjct: 5   PFPTPRQYFRLRDTRPRKRFGQHFLDHSATAEQIVRCAEFDASDTVVEIGPGLGALTRFI 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIAN 124
           L L AR + ++E D+     L++      +++ + + DA+  DF         P+ ++ N
Sbjct: 65  LPLAAR-LHLVELDRDLATYLEENLPA-GSQVRLHRQDAVTFDFNALAEAAGQPLVVLGN 122

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI + LLF+ + +       +    + QKEVG R+TA   +  YG LSVL     + 
Sbjct: 123 LPYNITSPLLFHLLDSVQA---VKRAVFMVQKEVGARLTASPGTRDYGVLSVLLAVYAEV 179

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLK 242
             +F + P  F+P PKV S V+         P       L+++   AF +RRKTL  SLK
Sbjct: 180 KRLFTVGPQQFYPPPKVESMVLRLDFKHPLPPDLPPFGLLRRLVSIAFQQRRKTLHNSLK 239

Query: 243 RLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              G      +++  + G+   LR + L+   F  +   L ++
Sbjct: 240 GTYGGQGGGLQDVFAKCGVAPGLRPDALTPGQFVELCKALKES 282


>gi|86605619|ref|YP_474382.1| dimethyladenosine transferase [Synechococcus sp. JA-3-3Ab]
 gi|119365853|sp|Q2JVW2|RSMA_SYNJA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|86554161|gb|ABC99119.1| dimethyladenosine transferase [Synechococcus sp. JA-3-3Ab]
          Length = 279

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 122/269 (45%), Gaps = 17/269 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGIT----VIEIGAGPGNLTQMLLTLGARKVIVI 76
           P+K  GQ++L D  + + I  ++           V+EIG G G LTQ LL  G   V+ +
Sbjct: 4   PRKRFGQHWLKDPAVHEAIVRAAQLPPPQRDPAWVLEIGPGTGQLTQRLLAQGVH-VVAV 62

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+    +L+   +  P R  +++ D       +      P  ++AN+PYN+   +L  
Sbjct: 63  EIDRDLCRLLQKRFADQP-RFHLVEGDF-----LRLPLPPQPRLLVANIPYNLTGPILEK 116

Query: 137 WISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            + +   P   +E + L+ QKE+ ER+ A   S  YG LSV   +  +  ++  + P  F
Sbjct: 117 VLGSPAQPVRQFERIVLMVQKELAERLQAGPGSKAYGALSVRVRYLAECELICRVPPSAF 176

Query: 196 FPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LL 250
            P P+V S V+   P   P P        ++  + F  RRK L  +L  L         L
Sbjct: 177 RPPPQVESAVVRLTPRPAPTPARDPRWFSQLVCQGFSARRKQLVNALGGLVDRQTVAAAL 236

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDN 279
            Q  +    RAE L + D+  ++++L + 
Sbjct: 237 AQLRLSPTARAEELDLPDWLALSDLLLEQ 265


>gi|21221587|ref|NP_627366.1| dimethyladenosine transferase [Streptomyces coelicolor A3(2)]
 gi|256787224|ref|ZP_05525655.1| dimethyladenosine transferase [Streptomyces lividans TK24]
 gi|289771122|ref|ZP_06530500.1| dimethyladenosine transferase [Streptomyces lividans TK24]
 gi|27151606|sp|Q9K3R5|RSMA_STRCO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|8894782|emb|CAB95942.1| putative dimethyladenosine transferase [Streptomyces coelicolor
           A3(2)]
 gi|289701321|gb|EFD68750.1| dimethyladenosine transferase [Streptomyces lividans TK24]
          Length = 286

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 124/279 (44%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL
Sbjct: 12  PADVRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V  +E D      L            +R  ++  DA+ V   +     +P  ++
Sbjct: 72  E-AADRVTAVEIDDVLAGALPATVAARMPARADRFALVHSDAMHV---RELPGPAPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 128 ANLPYNVAVPVLLHMLDT---FPGIERTLVMVQAEVADRLAAGPGSKVYGVPSVKANWYA 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR-- 238
           +      I  +VF+P+P V S ++  +    P+        +  +   AF +RRKTLR  
Sbjct: 185 EVKRAGSIGRNVFWPAPNVDSGLVSLVRRSEPLRTTASKAEVFAVVDAAFAQRRKTLRAA 244

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
               +      E  L  AG+    R E L++E+F RI  
Sbjct: 245 LAGWAGSAAAAEAALVGAGVSPQARGEALTVEEFARIAE 283


>gi|282899539|ref|ZP_06307503.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505]
 gi|281195418|gb|EFA70351.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505]
          Length = 281

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 13/269 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P+K   Q++L     L  I +++       ++EIG G G LT+ LL L    ++ +E 
Sbjct: 2   VRPQKQFAQHWLRSEKALNSIVKAAECQVNDRILEIGPGTGILTKRLLPL-VDSLLAVEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLL 134
           D+    +L        N L ++Q D L +                +++AN+PYNI   ++
Sbjct: 61  DRDLCELLAKKLGARENFL-LLQGDFLTLGIASQLTAFPKFQRQNKVVANIPYNITGPII 119

Query: 135 FNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
              +   AD  P  ++S+ LL QKEV +R+ A+  S ++G LSV   +  +   +  +  
Sbjct: 120 EKLLGTIADPNPQPFDSIVLLIQKEVAQRLYAKPGSRNFGALSVRVQYLAECEFICTVPA 179

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248
             F+P PKV S V+  +P    I     + L+ + +  FG +RK LR +L+ +       
Sbjct: 180 SAFYPPPKVDSAVVRLLPRNMEIGANDPKLLENMVKLGFGCKRKMLRNNLQSVIDRESLT 239

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276
            LL    I  ++RAE +S+  +  + N L
Sbjct: 240 KLLEGLNINPHVRAEEISVSQWVSLVNSL 268


>gi|73667017|ref|YP_303033.1| dimethyladenosine transferase [Ehrlichia canis str. Jake]
 gi|119365025|sp|Q3YS70|RSMA_EHRCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|72394158|gb|AAZ68435.1| dimethyladenosine transferase [Ehrlichia canis str. Jake]
          Length = 262

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/262 (40%), Positives = 147/262 (56%), Gaps = 8/262 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +I PKK + Q F+   +I  KI   +G++   ++IEIG G G +T  +L    +++I IE
Sbjct: 6   RIYPKKELSQCFISSSHITDKIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKRLISIE 65

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           KD +  PI K I  +   + E I  DAL +D      I  P++IIANLPY+I T LL  W
Sbjct: 66  KDSRLMPIHKKIVDEFNGKYEFILSDALNIDLRTI--IEPPVKIIANLPYHIATPLLMKW 123

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I    +  F+ S TL+FQKEV +RI AQ N+ +Y  LSVL    +    M D  P +F P
Sbjct: 124 I---NYIDFFTSFTLMFQKEVADRIVAQPNNKNYSILSVLIQLLSNVYKMEDFGPEIFSP 180

Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254
            PKV S+VI+ I    P        L ++ +  FG+RRK +R +LK+L    + +L    
Sbjct: 181 QPKVMSSVINIIVLPKPRFNVNHNKLSQVLKVTFGERRKMIRSTLKKLINNTDEILQSLN 240

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           I  NLR ENLSIE FC+I N +
Sbjct: 241 INNNLRPENLSIEQFCKIANSI 262


>gi|119718076|ref|YP_925041.1| dimethyladenosine transferase [Nocardioides sp. JS614]
 gi|119538737|gb|ABL83354.1| dimethyladenosine transferase [Nocardioides sp. JS614]
          Length = 297

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 131/279 (46%), Gaps = 16/279 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I   +G      V+E+G G G+LT  LL
Sbjct: 13  PADVRLLAAELDLRPTKQRGQNFVIDANTVRRIVREAGVTAEDVVLEVGPGLGSLTLALL 72

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
            + A +V+ +E D      L    + +     +R E++  DA+++   +     +P  ++
Sbjct: 73  AV-AGRVVAVEVDPVLAGRLPATIAAYAPAQADRFEVVLGDAMRI---QEVPGPTPTALV 128

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L       T  P  E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 129 ANLPYNVSVPVLL---HLLTLLPSLERGLVMVQAEVADRLAAAPGSKVYGVPSVKAAWFA 185

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241
                  +  +VF+P+P V S ++ +     P      E +  +   AF +RRK LR  L
Sbjct: 186 DVRRAGAVGRNVFWPAPNVDSGLVAWSRREPPATTATREQVFAVVDAAFAQRRKALRGVL 245

Query: 242 KRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           + L      +  L  AG++   R E+L +EDF R+   L
Sbjct: 246 RSLAPAESVDAALAGAGVDPLARGESLRVEDFARLAERL 284


>gi|148284255|ref|YP_001248345.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Boryong]
 gi|146739694|emb|CAM79504.1| dimethyladenosine transferase (rRNA methylation) [Orientia
           tsutsugamushi str. Boryong]
          Length = 273

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 97/276 (35%), Positives = 150/276 (54%), Gaps = 15/276 (5%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLL 66
            ++   +  +KI   K +GQ+FLLD NI  KI   +  S+ G  V+E+G GPG LT+ +L
Sbjct: 5   PTVSQHMKLHKITANKSLGQHFLLDSNICNKIVSVAPNSITGKVVLEVGPGPGGLTRAIL 64

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
               +K+IVIEKD  F  +L +I +   ++LE+I  DAL  D       S+ I II+NLP
Sbjct: 65  AHNPKKLIVIEKDASFIELLHEIPTMPSSKLEVICGDALNFDLSNI--ESNRIIIISNLP 122

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YNIGT+L+  W+       F E + ++ Q EV ERI +   S  YGR++VL    +    
Sbjct: 123 YNIGTQLIVQWLHQ---ISFVEYMIIMLQDEVVERIISNHCSKTYGRITVLAQIVSDVRK 179

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            F +    F P PKV S+V+   P  + +    +E+++KIT+ AF  RRK L+  L  L 
Sbjct: 180 CFKVPSRAFNPPPKVDSSVMLVSPKKHQLDRHTIENVQKITKLAFSTRRKKLKNCLSHLL 239

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 + +L+    + + R E L+ E + +++ IL
Sbjct: 240 TSINIPDEILNA---QLHQRPEQLTPEQYVQLSRIL 272


>gi|302552007|ref|ZP_07304349.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM
           40736]
 gi|302469625|gb|EFL32718.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM
           40736]
          Length = 295

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++        +E+G G G+LT  LL
Sbjct: 12  PADIRDLATTLGVRPTKQRGQNFVIDANTVRRIVRTAQVRPDDVAVEVGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            + A +V  +E D      L            +R  ++  DA+ V         +P  ++
Sbjct: 72  EV-ADRVTAVEIDDVLAAALPATITARMPDRADRFALVHCDAMHVTE---LPGPAPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 128 ANLPYNVAVPVLLHMLDT---FPTIERTLVMVQSEVADRLAAAPGSKVYGVPSVKANWYA 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR-- 238
           +      I  +VF+P+P V S ++  +    P+        +  +   AF +RRKTLR  
Sbjct: 185 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTTASKAEVFAVVDAAFAQRRKTLRAA 244

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
               +      E  L  AG+    R E+L++E+F RI  
Sbjct: 245 LAGWAGSAAAAETALVAAGVSPQARGESLTVEEFARIAE 283


>gi|268608155|ref|ZP_06141882.1| dimethyladenosine transferase [Ruminococcus flavefaciens FD-1]
          Length = 285

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 131/284 (46%), Gaps = 17/284 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + N  ++++ IL  +     K +GQNF+++ +I  KIAE   +  G  V+EIG G G 
Sbjct: 1   MNLTN-INTVRDILERHGFSFSKGLGQNFIINPDICPKIAEMGNAQAGYGVLEIGTGIGV 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118
           LT  L    A KV  +E D +  PIL++  S   N ++I  +D +K D +K         
Sbjct: 60  LTAELAKR-ADKVCAVEIDTRLLPILEETLSDFDN-IKIFNEDIMKCDLQKLIAEEFQGL 117

Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
              + ANLPY I + ++   + +       +S+T++ QKE  +R+ A+  +   G ++V 
Sbjct: 118 HTAVCANLPYYITSPVIMLLLESKLP---IDSITVMVQKEAAQRLCAKVGTRDSGAITVG 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRK 235
             +      +F++S   F P+P V S VI    H          +   K+ +  F +RRK
Sbjct: 175 VNYYGTVKSLFNVSRGSFMPAPNVDSAVIRIDLHSEHRLSEEDEKFFFKVVKSGFSQRRK 234

Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRIT 273
           T   ++  L G       + L   G+    R E+L ++      
Sbjct: 235 TAANAVSSLMGIPKEKVYSALKAVGLPETARIESLDMDQLIAFA 278


>gi|258654668|ref|YP_003203824.1| dimethyladenosine transferase [Nakamurella multipartita DSM 44233]
 gi|258557893|gb|ACV80835.1| dimethyladenosine transferase [Nakamurella multipartita DSM 44233]
          Length = 302

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 20/283 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     + P K +GQNF+ D N +++I  ++       V+E+G G G+LT  L+  
Sbjct: 14  EVRRLAEVLDLQPTKTLGQNFVHDGNTVRRIVAAADLRSTDHVLEVGPGLGSLTLGLVDA 73

Query: 69  GARKVIVIEKDQQFFPILKDISSQH-PNR---LEIIQDDALKVDFEKFF-------NISS 117
            A     +E D +   +L      H P R   L +I  DAL +  ++           + 
Sbjct: 74  AAAV-TAVEIDPRLAALLPTTVRAHAPGRYQALNVITADALTITADRLALTDPDRMAPAD 132

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P  ++ANLPYN+   ++ + ++     P      ++ Q EV +R+ A   S  YG  S  
Sbjct: 133 PTALVANLPYNVAVPVILHLLAE---VPTLRRALVMVQAEVADRLAADPGSKTYGVPSAK 189

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             W  +A     +S  VF+P P V S ++ F            ++  +   AF +RRKTL
Sbjct: 190 LAWYGRAHRAGSVSRTVFWPVPGVDSALVAFDRSPTARTGDRSAVFAVIDAAFAQRRKTL 249

Query: 238 RQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           R +L          E +L +AGI+ + R E L I +F RI   
Sbjct: 250 RAALADWAGSPAFAEQILTRAGIDPSARGEVLGIAEFTRIAQA 292


>gi|262341205|ref|YP_003284060.1| dimethyladenosine transferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272542|gb|ACY40450.1| dimethyladenosine transferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 259

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/264 (34%), Positives = 137/264 (51%), Gaps = 8/264 (3%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  +K I +K   Q FL D NI KKI ++   L+  TV+EIG G G LTQ LL     +V
Sbjct: 1   MQMHKSIFRKKFDQYFLKDKNIAKKIVKNLSFLNYDTVVEIGPGLGILTQYLLKHHQNQV 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +IE D++    L++  S   NR  II  D LK   E+    +    II N PY+I +++
Sbjct: 61  FLIEIDRELISFLRNKFSISKNR--IIHKDFLKWSPEEIHLQN--FAIIGNFPYSISSQI 116

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +  + + P       +FQKEV +RI + +   +YG LSVL     +   +F ++P 
Sbjct: 117 LFHILKYNQYIP---ECIGMFQKEVAKRIASHEGKKNYGILSVLVQTFYEVKYLFTVNPQ 173

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           VFFP P V S V+        + C  + L K  + AF +RRK L+ SL+        ++ 
Sbjct: 174 VFFPIPNVKSAVLSLRKKNEILSCNKDLLFKCVKTAFNQRRKKLKNSLQLFNHIPNFYKI 233

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
               N RAE LS+++F ++T  + 
Sbjct: 234 PF-LNKRAEELSVQEFLQLTKEIE 256


>gi|282865480|ref|ZP_06274531.1| dimethyladenosine transferase [Streptomyces sp. ACTE]
 gi|282559524|gb|EFB65075.1| dimethyladenosine transferase [Streptomyces sp. ACTE]
          Length = 326

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 122/279 (43%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++       V+EIG G G+LT  LL
Sbjct: 12  PADIRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPEDVVVEIGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V+ +E D      L    +       +R  ++  DA+ V         +P  ++
Sbjct: 72  E-AADRVVAVEIDDVLAGALPATVAARLPVRADRFALVHSDAMLVTE---LPGPAPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L   +      P  E   ++ Q EV +R+ A+  +  YG  SV   W  
Sbjct: 128 ANLPYNVAVPVLLTMLER---FPSIERTLVMVQAEVADRLAAKPGNKVYGVPSVKAAWYA 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR-- 238
                  I   VF+P+P V S ++  +    PI        +  +   AF +RRKTLR  
Sbjct: 185 DVKRAGSIGRTVFWPAPNVDSGLVSLVRRTEPIRTTASRTEVFAVVDAAFAQRRKTLRAA 244

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
               +      E  L  AG+    R E L++E+F  I  
Sbjct: 245 LAGWAGSAAAAETALVAAGVSPQARGEALTVEEFAAIAE 283


>gi|157123560|ref|XP_001660203.1| dimethyladenosine transferase [Aedes aegypti]
 gi|108874371|gb|EAT38596.1| dimethyladenosine transferase [Aedes aegypti]
          Length = 339

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 87/296 (29%), Positives = 145/296 (48%), Gaps = 25/296 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ ++  YK+   K + QNFL+D  +  KI  ++G++    V+E+G GPG +T+ +
Sbjct: 19  PLPTIRDLVRLYKLRALKQLSQNFLMDERLTNKIVRAAGNIKDNYVLEVGPGPGGITRSI 78

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISS------ 117
           +     +++V+EKD++F P L+ ++    + L+  I++ D L+   E  F          
Sbjct: 79  IRKFPHQLVVVEKDRRFLPTLELLAEASKDFLQMDIVRGDILEYRTEMAFPDCPKTEWND 138

Query: 118 ---PIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
              P+ +I NLP+ I TRLL NW     + +  W     SLTL FQKEV ERI A   S 
Sbjct: 139 KRAPVHLIGNLPFAISTRLLINWIREMSLRSGAWSYGRSSLTLTFQKEVAERIVAPILSE 198

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQE 228
           +  RLSV+    +KA + F I    F P P V   V+  IP   P+     + ++K+ + 
Sbjct: 199 YRCRLSVMNQVWSKAELKFIIPGKAFVPKPDVDVGVVTIIPLKTPLTTVHFDVVEKVIRH 258

Query: 229 AFGKRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNIL 276
            F  R+K  R+ +  L   ++           A ++   R+  LS E+  RI    
Sbjct: 259 IFSMRQKYCRRGVSNLYPPDVREDLTQLTFRMADVDPLARSFQLSTEECLRIAEAY 314


>gi|325680208|ref|ZP_08159773.1| dimethyladenosine transferase [Ruminococcus albus 8]
 gi|324108157|gb|EGC02408.1| dimethyladenosine transferase [Ruminococcus albus 8]
          Length = 286

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 140/288 (48%), Gaps = 18/288 (6%)

Query: 3   MNNKSH--SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+N S+   +K ++  +     K +GQNFL++ ++  +IAE   +  G  VIEIG G G 
Sbjct: 1   MDNLSNIGVIKDVMQRHGFTFSKALGQNFLVNPSVCPRIAEMGNAKKGFGVIEIGTGVGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-- 118
           LT  L    A KV+ IE D +  P+L++  ++H N +++I  D ++VD  K         
Sbjct: 61  LTNELAKR-ADKVVAIEIDDRLIPVLEETLAEHDN-VKVINADVMEVDLHKLIEEEFDGL 118

Query: 119 -IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            + + ANLPY I + +L   +          S+T++ QKE G R+ A   +   G ++V 
Sbjct: 119 EVAVCANLPYYITSPILMMLLEQRL---RIRSVTVMVQKEAGTRLCAPVGTRDMGAVTVA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLES-LKKITQEAFGKRRK 235
             + +   ++F++S   F P+P V S V+ F I    P     E+   K+ + AF +RRK
Sbjct: 176 VNYFSAPKILFNVSRGSFMPAPNVDSCVVRFDIKEDTPAGVTDEAFFFKMVRAAFSQRRK 235

Query: 236 TLRQS------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           TL  S      L +      +  +G+   +R E L +E     +  L 
Sbjct: 236 TLVNSVSSGMGLDKAAVTKAVENSGLPAAVRPEQLKMEQLVTFSEELK 283


>gi|148270487|ref|YP_001244947.1| dimethyladenosine transferase [Thermotoga petrophila RKU-1]
 gi|166221712|sp|A5IME8|RSMA_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|147736031|gb|ABQ47371.1| dimethyladenosine transferase [Thermotoga petrophila RKU-1]
          Length = 260

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 132/261 (50%), Gaps = 18/261 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L  Y +  KK++GQ FL D  I K+I +  G      V+EIGAG G LT+ L   GAR V
Sbjct: 7   LKKYGVKLKKHLGQVFLSDDRIAKRIVKEVGLTPEDVVVEIGAGAGTLTEELAKTGAR-V 65

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           I  E D+   P+L++  S++PN +E+  +D LK       +I      ++N+PY+I   +
Sbjct: 66  IAYEIDESLAPVLRERLSKYPN-VELRFEDFLK-----AKDIPEGAICVSNIPYSITGPI 119

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +   I        ++   ++ QKEVGERI A+     YG LSV+     +   +FD+S  
Sbjct: 120 MEKIIEWK-----FKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKLFDVSRS 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P+P+V STV+        +    E  +K     F K+RKTL+ +L+      +    
Sbjct: 175 CFVPNPEVDSTVVDL--RRKSVDLDFEKFRKFVSMIFAKKRKTLKNNLRPFLS--VFE-- 228

Query: 254 GIETNLRAENLSIEDFCRITN 274
           G++ + RAE L++E+      
Sbjct: 229 GVDLSRRAEQLTVEEIVEFYE 249


>gi|226192683|pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
           Methyltransferase (Ksga) In Space Group P21212
 gi|226192684|pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
           Methyltransferase (Ksga) In Space Group P21212
          Length = 271

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 94/277 (33%), Positives = 139/277 (50%), Gaps = 19/277 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S++ +L  + +   K  GQNFL+    L++I E++    G  V E+G G G LT+ L
Sbjct: 6   SPQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRAL 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L  GA +V  IEKD +  P+L++  S  P  + ++  DAL   +E+    S    ++ANL
Sbjct: 65  LEAGA-EVTAIEKDLRLRPVLEETLSGLP--VRLVFQDALLYPWEEVPQGS---LLVANL 118

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY+I T L+   +        +  L  L QKEV ER TA+  +P YG L++       A 
Sbjct: 119 PYHIATPLVTRLLKTGR----FARLVFLVQKEVAERXTARPKTPAYGVLTLRVAHHAVAE 174

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            +FD+ P  FFP PKV S+++   P           L ++ + AFGKRRKTL  +L   G
Sbjct: 175 RLFDLPPGAFFPPPKVWSSLVRLTPTGA---LDDPGLFRLVEAAFGKRRKTLLNALAAAG 231

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 E  L   G+   +RAE L +E F R+   L 
Sbjct: 232 YPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268


>gi|302844675|ref|XP_002953877.1| hypothetical protein VOLCADRAFT_106150 [Volvox carteri f.
           nagariensis]
 gi|300260689|gb|EFJ44906.1| hypothetical protein VOLCADRAFT_106150 [Volvox carteri f.
           nagariensis]
          Length = 384

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 108/237 (45%), Gaps = 12/237 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +   K  GQ+ L +  +++ I + +G      V+EIG G GNLT  LL   A+KVI IE
Sbjct: 32  GLEFHKSKGQHILKNPLVVQAIVDKAGVKSTDVVLEIGPGTGNLTVKLLE-KAKKVIAIE 90

Query: 78  KDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L+       + N L+II  D ++V+   F         +AN+PYNI + L F
Sbjct: 91  LDPRMVLELQRRVQGTAYANNLQIIHGDFMRVELPYF------DLCVANIPYNISSPLTF 144

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             ++     P + +  +++Q E   R+ A+     Y RL+V T    + + +  +  + F
Sbjct: 145 KLLAHR---PAFRAAVIMYQHEFAMRLVAKPGDQLYSRLAVNTQLLARVSHLLKVGKNNF 201

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S+V+   P   P P        + +  F ++ KTL    ++      L  
Sbjct: 202 RPPPKVDSSVVRIEPRHPPPPVNFLEWDGLVRLCFSRKNKTLGAIFRQTNALQALEA 258


>gi|311747369|ref|ZP_07721154.1| dimethyladenosine transferase [Algoriphagus sp. PR1]
 gi|126579087|gb|EAZ83251.1| dimethyladenosine transferase [Algoriphagus sp. PR1]
          Length = 261

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/262 (32%), Positives = 128/262 (48%), Gaps = 11/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           K+  KK++GQ+FL DL+I ++IA +  G      V+EIG G G LT  LL     ++ +I
Sbjct: 3   KVRAKKHLGQHFLTDLSIAERIALAVKGHGGVKKVLEIGPGMGVLTDYLLK-NPLELYLI 61

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           + D++    L        +R  II+ D LK +     +IS P  I  N PYNI +++ F 
Sbjct: 62  DIDKESIAYLNKKYPSLKDR--IIEGDYLKYNLSN--DISEPYAIAGNFPYNISSQIFFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           +  + QKEV +RI + K +  YG LSVL         +F + P VF 
Sbjct: 118 VLEERDK---VTEVVCMLQKEVAKRIASPKGNKDYGILSVLLQAFYDIEYLFSVPPEVFD 174

Query: 197 PSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S VI  + +    + C  +   ++ +  FG RRKTLR SLK       L +  +
Sbjct: 175 PPPKVNSGVIRLVRNEVKSLDCNEKLFFQVVKGGFGNRRKTLRNSLKSFQLPEQLKEHPL 234

Query: 256 ETNLRAENLSIEDFCRITNILT 277
             + RAE L + DF  I   + 
Sbjct: 235 -MDKRAEQLDVADFVFIAQQIE 255


>gi|15806536|ref|NP_295249.1| dimethyladenosine transferase [Deinococcus radiodurans R1]
 gi|6459288|gb|AAF11091.1|AE001996_6 dimethyladenosine transferase [Deinococcus radiodurans R1]
          Length = 336

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 90/276 (32%), Positives = 140/276 (50%), Gaps = 16/276 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+  G  V+EIG G G LT+ +
Sbjct: 68  SPARVRALLAAHGLKPTKSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREV 127

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            + GAR V  +EKD++  P+L +  +     + +I  DAL  D+       +  R+IANL
Sbjct: 128 ASRGAR-VTALEKDERLRPVLAETLAGLD--VNVIWGDALDFDYAAL---PAGTRVIANL 181

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I   LL  ++ A    P   S T+L QKEV +R+ AQ    +YG LS +        
Sbjct: 182 PYYITGLLLTRFMQA----PGVVSATVLVQKEVAQRLVAQPGQDNYGFLSAVAALYGSVK 237

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            + D+    FFP+P VTS+V+         P    +       A   RRKTLR +L+ +G
Sbjct: 238 HVRDVPKGAFFPAPDVTSSVVRLDFDRTR-PQPDPAFVSFVDNALRYRRKTLRNNLRMMG 296

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 +  L   G+  ++RAE++ +     +   L
Sbjct: 297 HSGEAIDAALSDLGLRPDVRAEDVPLSGLRAVAAAL 332


>gi|20094370|ref|NP_614217.1| dimethyladenosine transferase (rRNA methylase) [Methanopyrus
           kandleri AV19]
 gi|27151577|sp|Q8TWU7|RSMA_METKA RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|19887438|gb|AAM02147.1| Dimethyladenosine transferase (rRNA methylase) [Methanopyrus
           kandleri AV19]
          Length = 278

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 135/281 (48%), Gaps = 24/281 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L  + S Y I P++ +GQ+F++D NIL+ + E++   +   V+EIG GPG LT+ L+T  
Sbjct: 7   LAYLRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTR- 65

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A +VI +E D +   ILK    + PN LEI++ D L+ D     N     +++AN+PYNI
Sbjct: 66  AGQVIAVELDGRMVEILKRELGEAPN-LEIVRADFLEYDVPDDVN-----KVVANIPYNI 119

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F  +  D      +   L +Q+E  ER+ A+  S  Y RL+V+        ++  
Sbjct: 120 SSPITFKLLELD-----IDVAVLTYQREFAERMVAEPGSKKYSRLTVMVNLLADVELLRG 174

Query: 190 ISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSL------ 241
           +    F P P+V S+V+   P           ++L+ + +  F  + KT+R +L      
Sbjct: 175 VPRRAFIPPPRVGSSVVRLTPKSEEERPDVDPDTLESVCRALFQHKNKTVRNALLLSAHE 234

Query: 242 ---KRLGGENLLHQAGIE-TNLRAENLSIEDFCRITNILTD 278
               R     +L +   +  + R  +L  E    +   +  
Sbjct: 235 WATDREQAREVLEELPEDLLSERPLHLPPERVAELAAAIES 275


>gi|257438823|ref|ZP_05614578.1| dimethyladenosine transferase [Faecalibacterium prausnitzii A2-165]
 gi|257198732|gb|EEU97016.1| dimethyladenosine transferase [Faecalibacterium prausnitzii A2-165]
          Length = 320

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 16/288 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++ +   Y     K  GQNF+++  +  KI ++SG      V+EIG G G 
Sbjct: 37  MPELTDLSYVRALCEKYDFALSKGFGQNFIVNPGLPPKIVDASGVDKRYGVLEIGPGIGV 96

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117
           LT+ L    A KV+ IE D++  P+L +  +   N  +++  D LKVD +          
Sbjct: 97  LTRELAKRAA-KVVSIEVDERLPPLLAETMAGVDN-FKLVLQDVLKVDLKALIAQEFPGM 154

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P+ + ANLPY I + ++   +         ESLT++ QKE  +R+ A   +     +S  
Sbjct: 155 PVAVCANLPYYITSPIVMKLLGDRLP---IESLTVMVQKEAADRLAAAPGTRASSAISCA 211

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             +   + MMF  +P  F+P+PKVTS V+       P       E    + + AFG+RRK
Sbjct: 212 VSYYATSKMMFTAAPGSFYPAPKVTSAVVRMEIRPTPAVQVEDEEGYFALVRAAFGQRRK 271

Query: 236 TLRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           T   ++       +      +  AG +  +R E L++EDF +I + L 
Sbjct: 272 TAANAIASGLGMPKDAVTAAIEAAGFDARIRPEALTLEDFAKIQSALA 319


>gi|297824837|ref|XP_002880301.1| hypothetical protein ARALYDRAFT_904217 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326140|gb|EFH56560.1| hypothetical protein ARALYDRAFT_904217 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 352

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 14/256 (5%)

Query: 1   MTMNNKSHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           M       S +   +HY   I   K  GQ+ L +  ++  I + +G      ++EIG G 
Sbjct: 6   MRKEKPKASNRAPSNHYQGGISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGT 65

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNIS 116
           GNLT+ LL  G ++VI +E D +    L+      P  NRL++IQ D LK +  +F    
Sbjct: 66  GNLTKKLLEAG-KEVIAVELDSRMVLELQRRFQGTPYSNRLKVIQGDVLKTELPRF---- 120

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
                +AN+PY I + L F  +     P  +    +++Q+E   R+ AQ     Y RLSV
Sbjct: 121 --DICVANIPYQISSPLTFKLL---FHPTSFRCAVIMYQREFAMRLVAQPGDNLYCRLSV 175

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
            T    + + +  +  + F P PKV S+V+   P         +      +  F ++ KT
Sbjct: 176 NTQLYARVSHLLKVGKNNFRPPPKVDSSVVRIEPRRPGPQVNKKEWDGFLRVCFIRKNKT 235

Query: 237 LRQSLKRLGGENLLHQ 252
           L    K+    ++L +
Sbjct: 236 LGSIFKQKSVLSMLEK 251


>gi|269958833|ref|YP_003328621.1| dimethyladenosine transferase [Anaplasma centrale str. Israel]
 gi|269848663|gb|ACZ49307.1| dimethyladenosine transferase [Anaplasma centrale str. Israel]
          Length = 270

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 98/267 (36%), Positives = 151/267 (56%), Gaps = 9/267 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            K    K +GQNF+LD  I ++I   +GS++G  +IE+G G G +T+++L      ++ I
Sbjct: 4   LKHKAYKSLGQNFILDPAIAEEIVSYAGSIEGYNIIEVGPGFGTMTEIILRSKVASLLAI 63

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           EKD +  P  + +  QHP+    I+ D L ++ E+   I++P ++IANLPYNI   LL  
Sbjct: 64  EKDCRLSPTHESLMKQHPH-YRYIEHDVLDINLEEL--IAAPSKMIANLPYNISVILLLR 120

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +    +   +E LTL+FQKEV ER+ A+  +  Y  LSVL         + D+ PHVF 
Sbjct: 121 MLK---YIHNFERLTLMFQKEVAERLVAKPGTKSYSILSVLVQLLCDVEKVKDLQPHVFS 177

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQA 253
           P PKV S+V++  P  N   P     + K+ ++AFG +RKT+R +L       + LL + 
Sbjct: 178 PPPKVCSSVVNITPLGNLRFPVDYSYMLKMLKKAFGCKRKTVRNALGLPHQEFDALLAEC 237

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQ 280
            I  ++RAENLS+E  C ++N L   Q
Sbjct: 238 KIPPSVRAENLSVEQLCAVSNFLQSRQ 264


>gi|282891871|ref|ZP_06300350.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498131|gb|EFB40471.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 282

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 145/283 (51%), Gaps = 14/283 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K + L   L+   I PKK + QNFL+D NI++KIA ++ +     ++EIG GPG+LT+ L
Sbjct: 5   KPNELFAFLNSLGIRPKKGLSQNFLIDGNIIRKIAATAAASSDDVILEIGPGPGSLTECL 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRI 121
           L  GA +VI +EKD Q    L  + +     L++  +D LK   E  F          ++
Sbjct: 65  LETGA-QVIAVEKDNQLAEALIRLQTP-AQTLQVHCEDILKFPIESVFKQELKAGKKAKV 122

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           IANLPY++ + +L           ++ ++T++ Q+EV  R TA   S  +   ++   + 
Sbjct: 123 IANLPYHLTSSILAEL---APLHAYFSTITVMVQEEVARRFTAMPGSREFSAFTLFLNFF 179

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           +     F +    F+P+PKV S V+      +P     +    +T++AF +RRK ++ +L
Sbjct: 180 SNPVYNFKVGKQCFYPAPKVDSAVMTLH-LKSPPQVDQQGFFTLTRKAFEQRRKMIKSAL 238

Query: 242 KRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
           K +         L   GI   +RAE+LS++D+ ++  IL   +
Sbjct: 239 KSIYEPEKVMQALEGIGINPLVRAEDLSLDDYLKLFAILKKTE 281


>gi|300790057|ref|YP_003770348.1| dimethyladenosine transferase [Amycolatopsis mediterranei U32]
 gi|299799571|gb|ADJ49946.1| dimethyladenosine transferase involved in rRNA methylation
           [Amycolatopsis mediterranei U32]
          Length = 278

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 129/282 (45%), Gaps = 16/282 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++ + +   + P K +GQNF+ D N +++I E +    G  V+E+G G G+
Sbjct: 1   MVELLGPAEIRGLAAELDVRPTKKLGQNFVHDPNTVRRIVELANVAPGDVVLEVGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNIS 116
           LT  LL  GA  V+ +E D +    L    ++        L+++  DA++V   +     
Sbjct: 61  LTLGLLATGAH-VVAVEIDPKLAERLPKTVAERGPEVAGNLDVVGADAMRVTRGEL---G 116

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P  ++ANLPYN+   ++ + ++     P      ++ Q EV +R+ A   S  YG  SV
Sbjct: 117 EPTALVANLPYNVAVPVVLHLLAE---VPSLRKGLVMVQTEVADRMAAGPGSRIYGVPSV 173

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
              W   A  +  +   VF+P P V S ++ F           E L  +   AF +RRKT
Sbjct: 174 KLAWYGSARKVAAVPRSVFWPVPNVDSALVAFERGDTTASEDRELLFGLVDAAFSQRRKT 233

Query: 237 LRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           LR +L    G       LL  AGI+   R E L + DF RI 
Sbjct: 234 LRAALAGWAGSAERAGELLTAAGIDPRTRGEQLDVHDFARIA 275


>gi|260434330|ref|ZP_05788300.1| dimethyladenosine transferase [Synechococcus sp. WH 8109]
 gi|260412204|gb|EEX05500.1| dimethyladenosine transferase [Synechococcus sp. WH 8109]
          Length = 274

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 121/268 (45%), Gaps = 11/268 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++L D ++L++I E++       V+E+G G G LT+ LL  G + V  IE
Sbjct: 5   GHHARKRFGQHWLRDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L++     P    + Q D L+   E   +     +++AN+PYNI   LL   
Sbjct: 65  LDRDLVDGLQERFEAQPG-FSLHQGDVLEAPME-LSDGRIADKVVANIPYNITGPLLERL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     P  P ++ L LL QKEV ERI A+     +  LSV      +   +  + P  F
Sbjct: 123 VGRLDRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLARCRSVCPVPPRCF 182

Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S VI   P        P     ++ + ++AF  RRK LR +L  +   + L +
Sbjct: 183 QPPPKVQSEVICLEPLPASERVEPALAARVESLLKQAFLARRKMLRNTLAGVAEPDRLKE 242

Query: 253 ----AGIETNLRAENLSIEDFCRITNIL 276
               AG     R + L+   +  +   L
Sbjct: 243 LAASAGFSLQQRPQELAPATWVALARGL 270


>gi|291529852|emb|CBK95437.1| dimethyladenosine transferase [Eubacterium siraeum 70/3]
          Length = 287

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 129/289 (44%), Gaps = 17/289 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +   +++ +   +     K +GQNFL++  +  KIAE  G+   +  IEIG G G 
Sbjct: 1   MKLTD-ISTIRQLFEKHGFSFTKSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGV 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L      KV+ IE D    PIL +   ++ N +E+I  D ++ D  K      P  
Sbjct: 60  LTRELAERC-EKVVAIEIDTGLKPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDM 117

Query: 121 ---IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
              + ANLPY I + ++   +         +++T++ Q E  +RI A   S   G ++  
Sbjct: 118 DVIVCANLPYYITSPVIMKLLEEKLP---IKAITVMVQLEAADRICAAVGSRECGAITAS 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             +  K   +F ++   F P+P V S VI    +  P           ++ ++AF +RRK
Sbjct: 175 INYYAKPKKLFRVNRGSFMPAPNVDSAVISLERYEQPPYKVDNEPLFFEVIKQAFAQRRK 234

Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L   +              + + GI    RAE L++ +  ++  I+ +
Sbjct: 235 QLANPVSAYFKIPKAVLAEKMTEGGIPATARAEQLTMSELVKLYEIINE 283


>gi|213613183|ref|ZP_03371009.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 226

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 80/239 (33%), Positives = 119/239 (49%), Gaps = 16/239 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  + 
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYY 167

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLR 238
            +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R
Sbjct: 168 CQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIR 226


>gi|284008564|emb|CBA75122.1| dimethyladenosine transferase [Arsenophonus nasoniae]
          Length = 241

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 124/242 (51%), Gaps = 8/242 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           +  +        ++EIG G G LT  +       + V+E D+     L         +L 
Sbjct: 1   MVTAFNPKPDQAIVEIGPGLGALTLPVSEH-IENMTVVELDRDLAARLA-AHPALSAKLT 58

Query: 99  IIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
           IIQ+DA+ +DF         P+R   NLPYNI T L+F+     T+      +  + QKE
Sbjct: 59  IIQNDAMTIDFGAIAKEKGQPLRAFGNLPYNISTPLMFHLF---TYTNAIADMNFMLQKE 115

Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIP 216
           V  R+ A  N+  YGRLSV+  +  +   +  + P  F P+PKV S V+  IPH  NP P
Sbjct: 116 VVNRLVAGPNTKAYGRLSVMAQYYCQIIPILAVPPSAFTPAPKVDSAVVRLIPHQRNPYP 175

Query: 217 -CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
            C ++ L +IT +AF +RRKT+R SL  L       Q GI+ N RAEN+S+E++C++   
Sbjct: 176 ICDVKLLSRITTQAFNQRRKTIRNSLSDLFSVQDFEQLGIDPNCRAENISVENYCKLACR 235

Query: 276 LT 277
           L 
Sbjct: 236 LA 237


>gi|195128817|ref|XP_002008857.1| GI13722 [Drosophila mojavensis]
 gi|193920466|gb|EDW19333.1| GI13722 [Drosophila mojavensis]
          Length = 413

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 19/293 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64
              S++ ++  YK+   K + QNFL+D  +  KI +S+G       V+E+G GPG +T+ 
Sbjct: 101 PLPSIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDHNDIVLEVGPGPGGITRS 160

Query: 65  LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIR 120
           +L    ++++++EKD +F     +L++ +      +EI  +D L+ + E+   + +  + 
Sbjct: 161 ILRRQPQRLLLVEKDARFTETLQLLRECARPLDMEVEIYHEDILRFNIEQHVPDTTQRLH 220

Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +I NLP+ I TRLL NW          +      +TL FQKEV ERI AQ  S    RLS
Sbjct: 221 LIGNLPFAISTRLLINWFDDLSRRRGAFRRNDTCMTLTFQKEVAERICAQVGSEQRCRLS 280

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234
           V++   T+  + F I    F P P+V   V+  IP   P        ++++ +  F  R+
Sbjct: 281 VMSQIWTEPVLKFIIPGKAFVPKPQVDVGVVKVIPLKRPKTELPFPLVERVVRHIFSMRQ 340

Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           K  R+    L            L  +A ++  +R   LS+ +  R+ +   D+
Sbjct: 341 KYCRRGYSTLLPPEGREETTQALFQRADVKDTMRPFELSVAECLRLADAYADH 393


>gi|308505052|ref|XP_003114709.1| hypothetical protein CRE_28029 [Caenorhabditis remanei]
 gi|308258891|gb|EFP02844.1| hypothetical protein CRE_28029 [Caenorhabditis remanei]
          Length = 363

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 145/303 (47%), Gaps = 28/303 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +L+  +  Y++  KK + QN+L+D+NI +KIA+ +   +   VIEIG GPG +T+ +
Sbjct: 7   PLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVHENDWVIEIGPGPGGITRAI 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           L  GA ++ V+E D +F P L+ ++    +R+ I   DAL+ +    +            
Sbjct: 67  LEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKAETQRPKSVDW 126

Query: 117 -----SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQK 166
                 P+ +I NLP+NI + L+  ++         W      LTL FQ EV +R+ +  
Sbjct: 127 NDSSLPPMHVIGNLPFNIASPLIIKYLRDMSYQRGVWQYGRVPLTLTFQLEVAKRLCSPI 186

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKI 225
                 R+S++  + T+  M+F IS   F P P+V   V+ F+P   P+     E L+K+
Sbjct: 187 ACDTRSRISIMAQYVTEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKL 246

Query: 226 TQEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            ++ F  R+K + + LK L          + LL +  ++    +  L +E F  +     
Sbjct: 247 CRQVFHYRQKYVEKGLKTLYPPEMEDEMADELLKKCRVDPTTTSIRLGMEQFADLAEGYN 306

Query: 278 DNQ 280
           +  
Sbjct: 307 EQC 309


>gi|301761816|ref|XP_002916330.1| PREDICTED: probable dimethyladenosine transferase-like [Ailuropoda
           melanoleuca]
          Length = 313

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 122/275 (44%), Gaps = 19/275 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + + S   ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A
Sbjct: 20  RELKSAGGLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KA 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI  E D +    L       P  ++L+++  D LK D   F         +ANLPY 
Sbjct: 79  KKVIACELDPRLVAELHKRVQGTPLASKLQVLVGDVLKTDLPFF------DACVANLPYQ 132

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I +  +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   + 
Sbjct: 133 ISSPFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM 189

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            +  + F P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + 
Sbjct: 190 KVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQ 249

Query: 249 LLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278
           LL +       +   +  E+ SI D  +I  ILT 
Sbjct: 250 LLEKNYRIHCSVHNIIIPEDFSIAD--KIQQILTS 282


>gi|298345589|ref|YP_003718276.1| putative dimethyladenosine transferase [Mobiluncus curtisii ATCC
           43063]
 gi|298235650|gb|ADI66782.1| possible dimethyladenosine transferase [Mobiluncus curtisii ATCC
           43063]
          Length = 309

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 144/297 (48%), Gaps = 34/297 (11%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  +  + +  ++ P K  GQNF+ D   +++IA ++G   G TV+EIG G G+LT  LL
Sbjct: 6   ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKV----DFEKFFNISSPI 119
            LG  KVI IE DQ+    L    +QH      L ++  DAL++    D E     ++P 
Sbjct: 66  ELGC-KVIAIEIDQRLAAALPVTVAQHGANSADLCVMTQDALEIAGESDLELPAGWAAPH 124

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R++ANLPYN+ T LL +++      P  ES  ++ Q EV +R  A      YG  SV   
Sbjct: 125 RLVANLPYNVATPLLLHFLE---VLPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL------------------NPIPCCLES 221
           W  +A   F +  +VF+P P V STV+ F                        I    + 
Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKPSAEGLTDEAIETLRQE 241

Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           +      AF +RRKTLRQSL    G      NLL  AGI   LRAE LS+ DF +I 
Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAAGITPGLRAERLSVIDFTKIA 298


>gi|218441380|ref|YP_002379709.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424]
 gi|218174108|gb|ACK72841.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424]
          Length = 273

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 79/266 (29%), Positives = 126/266 (47%), Gaps = 13/266 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L     L +I E++       ++EIG G G LT+ LL      V+ +E D
Sbjct: 4   RPRKRFAQHWLRSEQALDQIIEAAQLQQSDHILEIGPGTGILTRRLLPE-VNSVVAVEID 62

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSPIRIIANLPYNIGTRLLF 135
           +     L     +  N L ++Q D L +D E     F   + P +++AN+PYNI   +L 
Sbjct: 63  RDLCQKLGKSLGKLDNFL-LLQGDILSLDLESHLVNFPKFNHPHKVVANIPYNITGLILE 121

Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             +     P    +E + LL QKEV ER+TA+  +  YG LS+   +  +   + ++   
Sbjct: 122 YLLGTIAEPTQKNYELIVLLIQKEVAERLTAKPGTKAYGALSIRVQYLAQCEWICEVPAR 181

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248
            F+P PKV S V+   P L   P    + L  + +  F  RRK L  +L  +   +    
Sbjct: 182 AFYPPPKVDSAVVRLRPQLVSNPANNPKQLDTLIKLGFANRRKMLYNNLTSVIDRDQLTQ 241

Query: 249 LLHQAGIETNLRAENLSIEDFCRITN 274
           LL +  I    RAE+LS+E +   +N
Sbjct: 242 LLEKLHINPQCRAEDLSLEQWIEFSN 267


>gi|21672424|ref|NP_660491.1| dimethyladenosine transferase [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25090650|sp|Q8KA00|RSMA_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21623034|gb|AAM67702.1| dimethyladenosine transferase [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 274

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 91/265 (34%), Positives = 143/265 (53%), Gaps = 9/265 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P K   QNFL++ N++KKI +        T++EIG G G LT+ +  +   ++IVIE
Sbjct: 7   KHLPLKRFSQNFLINQNLIKKIVKFINPQLKQTLVEIGPGLGALTKPICNI-VDELIVIE 65

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFN 136
            D      LK  S    ++L +   DAL  D+   F   +  IRI  NLPY+I T LLF 
Sbjct: 66  IDLNLLNFLKKYS--FYSKLIVFCQDALIFDYLNLFYKKNKLIRIFGNLPYHISTSLLFC 123

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           +   +      + +  + QKEV ER+ A   +  YGRLS++  +     ++F+++   F 
Sbjct: 124 FFEKNK---IIQDMNFMLQKEVAERLIAFPGTKSYGRLSIIAQYYCNIKIIFNVASENFR 180

Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PK+ ST ++ +PH         ++ L  IT  AF KRRK LR SL ++  E +  +  
Sbjct: 181 PIPKIDSTFVNLVPHKKSPYFTHDIKVLSYITNLAFQKRRKILRHSLGKIFSEKIFLKLN 240

Query: 255 IETNLRAENLSIEDFCRITNILTDN 279
           ++  LRAENLSI  +C+++N + +N
Sbjct: 241 VDPKLRAENLSILQYCQLSNYIIEN 265


>gi|148233697|ref|NP_001089685.1| DIM1 dimethyladenosine transferase 1-like [Xenopus laevis]
 gi|77748206|gb|AAI06333.1| MGC130862 protein [Xenopus laevis]
          Length = 306

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 70/267 (26%), Positives = 122/267 (45%), Gaps = 15/267 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +    ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   +++V
Sbjct: 16  VKSQGVLFNTGLGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KSKRV 74

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I  E D +    L+         ++L+++  D LK D   FF++      +ANLPY I +
Sbjct: 75  IACELDTRLVAELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISS 128

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  + 
Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 185

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P   P P   +    + + AF ++ KTL  S K    + LL 
Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAASFKSTAVQELLE 245

Query: 252 QA-GIETNLRAENLSIEDFCRITNILT 277
           +   I  +L   N+S+ +   I   + 
Sbjct: 246 KNYRIHCSL--HNISVPENFSIAEKIE 270


>gi|148989985|ref|ZP_01821260.1| dimethyladenosine transferase [Streptococcus pneumoniae SP6-BS73]
 gi|147924645|gb|EDK75731.1| dimethyladenosine transferase [Streptococcus pneumoniae SP6-BS73]
          Length = 252

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 20/252 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +++   D + VIEIG G G LT+ L    A +V+  E D +  PIL D      N + ++
Sbjct: 2   DTAEIDDQVNVIEIGPGIGALTEFLAERAA-QVMAFEIDHRLVPILADTLRDFDN-VTVV 59

Query: 101 QDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
            +D LKVD  +    F N + PI+++ANLPY I T +L + I +      +    ++ QK
Sbjct: 60  NEDILKVDLAQHIQNFKNPNLPIKVVANLPYYITTPILMHLIESGIP---FSEFVVMMQK 116

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           EV +RI+AQ N+  YG LS+   +   A + F +   VF P+P V S ++  +    P  
Sbjct: 117 EVADRISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAV 176

Query: 217 CCLES--LKKITQEAFGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLS 265
              +     K+++ +F  RRKTL  +L    G+           L QAG+  ++R E LS
Sbjct: 177 AVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALS 236

Query: 266 IEDFCRITNILT 277
           + +F  + + L 
Sbjct: 237 LAEFAGLADALK 248


>gi|25141369|ref|NP_491242.2| hypothetical protein T03F1.7 [Caenorhabditis elegans]
 gi|74961647|sp|P91424|TFB1M_CAEEL RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|20451250|gb|AAB42235.2| Hypothetical protein T03F1.7 [Caenorhabditis elegans]
          Length = 367

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 146/303 (48%), Gaps = 28/303 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +L+  +  Y++  KK + QN+L+D+NI +KIA+ +  ++   VIEIG GPG +T+ +
Sbjct: 9   PLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGITRAI 68

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           L  GA ++ V+E D +F P L+ ++    +R+ I   DAL+ +    +            
Sbjct: 69  LEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKNETARPESVDW 128

Query: 117 -----SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQK 166
                  + +I NLP+NI + L+  ++         W      LTL FQ EV +R+ +  
Sbjct: 129 HDSNLPAMHVIGNLPFNIASPLIIKYLRDMSYRRGVWQYGRVPLTLTFQLEVAKRLCSPI 188

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKI 225
                 R+S+++ +  +  M+F IS   F P P+V   V+ F+P   P+     E L+K+
Sbjct: 189 ACDTRSRISIMSQYVAEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVNTSFEVLEKV 248

Query: 226 TQEAFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
            ++ F  R+K + + LK L  E        +LL +  I+    +  L IE F  +     
Sbjct: 249 CRQVFHYRQKYVTKGLKTLYPEELEDELSDDLLKKCRIDPTTTSIRLGIEQFADLAEGYN 308

Query: 278 DNQ 280
           +  
Sbjct: 309 EQC 311


>gi|297568597|ref|YP_003689941.1| dimethyladenosine transferase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924512|gb|ADH85322.1| dimethyladenosine transferase [Desulfurivibrio alkaliphilus AHT2]
          Length = 287

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 136/286 (47%), Gaps = 17/286 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               +K +L+   + P K +GQNFL+   + ++I  + G     TV+E+G G G LT+ L
Sbjct: 2   NQSEIKKLLTERGLAPSKQLGQNFLIQPVLAERIVTAGGITPDDTVVELGVGLGALTRPL 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIAN 124
               AR VI +E D       ++     P  +E+   D L+ DF      + + ++I+AN
Sbjct: 62  AATAAR-VIGLEIDAGIIKYHREH-QGLPANVELRHQDLLRADFAALAAEVGTRLKIMAN 119

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY +   LLF  +             L+ QKEV +R+TA+  S  YG L+VL G     
Sbjct: 120 LPYAVTNPLLFKLVEQRRA---IRQAVLMIQKEVAQRLTARPGSKEYGVLTVLLGTCATV 176

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSL 241
             + ++ P  F+P PKV S VI    H  P          L+++   AF +RRKTL  SL
Sbjct: 177 QRLLEVGPGNFYPRPKVDSVVIAINFHEQPAALTEVDFALLRRVVDSAFRQRRKTLLNSL 236

Query: 242 K--------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
                    R      L  AGI+   RAENL  EDF R+T  +++ 
Sbjct: 237 SAGAGLGLDRNQTAAALAAAGIDPRFRAENLDTEDFLRLTKAVSEQ 282


>gi|328948142|ref|YP_004365479.1| ribosomal RNA small subunit methyltransferase A [Treponema
           succinifaciens DSM 2489]
 gi|328448466|gb|AEB14182.1| Ribosomal RNA small subunit methyltransferase A [Treponema
           succinifaciens DSM 2489]
          Length = 291

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 12/281 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N    LK  L    +  +K  GQNF+++ +  +KI           V EIG G G +T++
Sbjct: 7   NSPSELKAFLEQSGMAMQKKFGQNFMINQSAREKIFSLLELKKDELVWEIGPGLGCMTEL 66

Query: 65  LLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFF-NISSPIRI 121
           +L+ GA  + V E D+ F  ILK      +   + +II+ D LK   + F+ N   P ++
Sbjct: 67  ILSSGAN-LEVFEIDRGFISILKQFFEQQEKSEQFKIIEGDVLKNWKKAFYENPQKPAKL 125

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI    + + I+ +     ++      QKEV +R+ A+K + +Y   SVL  W 
Sbjct: 126 FGNLPYNIAATFIADTITENV---VFKKCVFTVQKEVAQRMAAKKGTENYSAFSVLCQWG 182

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
               +   +    F+P P V+S  +      NP         K+    F  RRKT++ ++
Sbjct: 183 YNVKLDLVLGSSSFWPRPTVSSQAVVMTKKENPFSGNSALFVKVVHALFAARRKTIQNNI 242

Query: 242 KRLGGENL-----LHQAGIETNLRAENLSIEDFCRITNILT 277
           K L  EN+       + GI    RAENL++EDF +I+++L+
Sbjct: 243 KPLLPENISAEEFFEKCGISKTERAENLAVEDFIKISDMLS 283


>gi|116063351|gb|AAI23078.1| LOC779588 protein [Xenopus (Silurana) tropicalis]
          Length = 304

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 15/267 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +    ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A++V
Sbjct: 14  VKSQGVLFNTGLGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRV 72

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +  E D +    L+         ++L+++  D LK D   FF++      +ANLPY I +
Sbjct: 73  VACELDTRLVAELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISS 126

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  + 
Sbjct: 127 PFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVG 183

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P   P P   +    + + AF ++ KTL  + K    + LL 
Sbjct: 184 KNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLE 243

Query: 252 QA-GIETNLRAENLSIEDFCRITNILT 277
           +   I  +L   N+S+ +   I   + 
Sbjct: 244 KNYKIHCSL--HNISVPENFSIAEKIE 268


>gi|197246216|gb|AAI69134.1| hypothetical protein LOC779588 [Xenopus (Silurana) tropicalis]
          Length = 306

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 15/267 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +    ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A++V
Sbjct: 16  VKSQGVLFNTGLGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRV 74

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +  E D +    L+         ++L+++  D LK D   FF++      +ANLPY I +
Sbjct: 75  VACELDTRLVAELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISS 128

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  + 
Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVG 185

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P   P P   +    + + AF ++ KTL  + K    + LL 
Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLE 245

Query: 252 QA-GIETNLRAENLSIEDFCRITNILT 277
           +   I  +L   N+S+ +   I   + 
Sbjct: 246 KNYKIHCSL--HNISVPENFSIAEKIE 270


>gi|91091694|ref|XP_972612.1| PREDICTED: similar to dimethyladenosine transferase [Tribolium
           castaneum]
 gi|270001061|gb|EEZ97508.1| hypothetical protein TcasGA2_TC011352 [Tribolium castaneum]
          Length = 306

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 12/249 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   ++   I   K  GQ+ L +  ++  + + +      TV+EIG G GNLT  L
Sbjct: 8   KKSRIHAAVAKQGITFNKSFGQHILKNPLVITSMLDKAALKPSDTVLEIGPGTGNLTLKL 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L    ++V+  E D +    L+      P  ++L+I+  D LK +   F         +A
Sbjct: 68  LES-VKQVVACEIDHRLVAELQKRVQNSPFKSKLQILIGDVLKTELPFFS------VCVA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      PF+    L+FQKE  +R+ A      Y RLS+ T    +
Sbjct: 121 NIPYQISSPLVFKLL---LHRPFFRCAVLMFQKEFADRLVAVPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S V+   P   P P        +T+ AF ++ KTL  + ++
Sbjct: 178 VDMLMKVGKNNFRPPPKVESAVVRIEPRNPPPPISYTEWDGLTRIAFSRKNKTLGAAFRQ 237

Query: 244 LGGENLLHQ 252
                 L +
Sbjct: 238 SVVLATLEK 246


>gi|282896422|ref|ZP_06304443.1| 16S rRNA dimethylase [Raphidiopsis brookii D9]
 gi|281198710|gb|EFA73590.1| 16S rRNA dimethylase [Raphidiopsis brookii D9]
          Length = 281

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 13/269 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P+K   Q++L     L  I +++       ++EIG G G LT+ LL L    ++ +E 
Sbjct: 2   VRPQKQFAQHWLRSEKALNSIVKAAECQANDRILEIGPGTGILTKRLLPL-VDSLLAVEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLL 134
           D+    +L        N L ++Q D L +                +++AN+PYNI   ++
Sbjct: 61  DRDLCELLAKKLGARENFL-LLQGDFLTLGIASQLTAFPKFQRQNKVVANIPYNITGPII 119

Query: 135 FNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
              +   AD  P  ++S+ LL QKEV +R+ A+  S ++G LSV   +  +   +  +  
Sbjct: 120 EKLLGTIADPNPQPFDSIVLLIQKEVAQRLYAKPGSRNFGALSVRVQYLAECEFICTVPA 179

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248
             F+P PKV S V+  +P    I     + L+ + +  FG +RK LR +L+ +       
Sbjct: 180 SAFYPPPKVDSVVVRLLPRNMEIGANDPKLLENMLKLGFGCKRKMLRNNLQSVIDRESLT 239

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNIL 276
            LL    I  ++RAE +S+  +  + N L
Sbjct: 240 KLLEGLNINPHVRAEEISVSQWVSLVNSL 268


>gi|291556434|emb|CBL33551.1| dimethyladenosine transferase [Eubacterium siraeum V10Sc8a]
          Length = 287

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 129/289 (44%), Gaps = 17/289 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +   +++ +   +     K +GQNFL++  +  KIAE  G+   +  IEIG G G 
Sbjct: 1   MKLTD-ISTIRQLFEKHGFSFTKSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGV 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L      KV+ IE D    PIL +   ++ N +E+I  D ++ D  K      P  
Sbjct: 60  LTRELAKRC-EKVVAIEIDTGLKPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDM 117

Query: 121 ---IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
              + ANLPY I + ++   +         +++T++ Q E  +RI A   S   G ++  
Sbjct: 118 DVIVCANLPYYITSPVIMKLLEEKLP---IKAITVMVQLEAADRICAAVGSRECGAITAS 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             +  K   +F ++   F P+P V S VI    +  P           ++ ++AF +RRK
Sbjct: 175 INYYAKPKKLFRVNRGSFMPAPNVDSAVISLERYEQPPYKVDNEPLFFEVIKQAFAQRRK 234

Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L   +              + + GI    RAE L++ +  ++  I+ +
Sbjct: 235 QLANPVSAYFKIPKAVLAEKMTEGGIPATARAEQLTMAELVKLYEIIDE 283


>gi|224128336|ref|XP_002320304.1| predicted protein [Populus trichocarpa]
 gi|222861077|gb|EEE98619.1| predicted protein [Populus trichocarpa]
          Length = 353

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 14/242 (5%)

Query: 15  SHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +HY   I   K  GQ+ L +  ++  I + SG      V+EIG G GNLT+ LL  G + 
Sbjct: 20  NHYQGGISFHKSKGQHILKNPLLVDSIVQKSGIKSTDVVLEIGPGTGNLTKKLLEAG-KM 78

Query: 73  VIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           V+ IE D +    L+         NRL++IQ D LK D   F         +AN+PY I 
Sbjct: 79  VVAIELDPRMVLELQRRFQGTAFSNRLKVIQGDVLKTDLPYF------DICVANIPYQIS 132

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + L F  ++     P +    ++FQ+E   R+ AQ     Y RLSV T    + + +  +
Sbjct: 133 SPLTFKLLNHQ---PSFRCAIIMFQREFAMRLVAQPGDTLYCRLSVNTQLYARVSHLLKV 189

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             + F P PKV S+V+   P         +      +  F ++ KTL    +     ++L
Sbjct: 190 GKNNFRPPPKVDSSVVRIEPRKPRPQVNPKEWDGFIRICFIRKNKTLGSIFRIKNVLSML 249

Query: 251 HQ 252
            +
Sbjct: 250 EK 251


>gi|167041696|gb|ABZ06440.1| putative ribosomal RNA adenine dimethylase [uncultured marine
           microorganism HF4000_010I05]
          Length = 312

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 124/274 (45%), Gaps = 15/274 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +I P+K +GQ+FL D  +L +I  ++       V+EIG G G LT+ L+  GA +V+ IE
Sbjct: 35  RIRPRKSLGQHFLADGRVLTRIVNAAEIASQELVLEIGPGQGALTRRLVDRGA-QVVAIE 93

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L D     PN L +++ DA KVD +      +  +++ NLPY     ++  +
Sbjct: 94  LDHHLASTLPDRLGNPPN-LTVVEADARKVDLKSLLGSGAVYKVLGNLPYYAANPIIRRF 152

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           + A   P   + + +  Q+EV   + A       G LSV   +  +  ++  + P  F P
Sbjct: 153 LEAPNQP---QLMVVTLQQEVARSMAAAPGKM--GFLSVAVQYYAETKVVCTVPPRAFRP 207

Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL------KRLGGENL 249
            PKVTS V+       P      +E+   + +  F   RK LR SL        +   +L
Sbjct: 208 PPKVTSAVVRLDIRPVPPVDVAEVEAFFALVRAGFASPRKQLRNSLAHGLGVSTVAIAHL 267

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           L    ++ + R   LS+ ++  I +     + + 
Sbjct: 268 LDSLNLDGSRRPATLSMVEWAVIHSAWERREKVG 301


>gi|294629824|ref|ZP_06708384.1| dimethyladenosine transferase [Streptomyces sp. e14]
 gi|292833157|gb|EFF91506.1| dimethyladenosine transferase [Streptomyces sp. e14]
          Length = 296

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 127/279 (45%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++G      V+E+G G G+LT  LL
Sbjct: 3   PADVRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAGVRPEDVVVEVGPGLGSLTLALL 62

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V+ +E D      L         +  +R  ++  DA+ V         +P  ++
Sbjct: 63  E-AAERVVAVEIDDVLAGALPATVAARMPERADRFALVHSDAMHV---AELPGPAPTALV 118

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 119 ANLPYNVAVPVLLHMLDT---FPSIERTLVMVQAEVADRLAAAPGSKVYGVPSVKANWYA 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLR-- 238
           +      I  +VF+P+P V S ++  +    P+        +  +   AF +RRKTLR  
Sbjct: 176 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTSATKREVFAVVDAAFAQRRKTLRAA 235

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
               +      E  L  AG+    R E+L++E+F RI  
Sbjct: 236 LAGWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAE 274


>gi|27151614|sp|Q9RU68|RSMA_DEIRA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 292

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/276 (32%), Positives = 140/276 (50%), Gaps = 16/276 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+  G  V+EIG G G LT+ +
Sbjct: 24  SPARVRALLAAHGLKPTKSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREV 83

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            + GAR V  +EKD++  P+L +  +     + +I  DAL  D+       +  R+IANL
Sbjct: 84  ASRGAR-VTALEKDERLRPVLAETLAGLD--VNVIWGDALDFDYAAL---PAGTRVIANL 137

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I   LL  ++ A    P   S T+L QKEV +R+ AQ    +YG LS +        
Sbjct: 138 PYYITGLLLTRFMQA----PGVVSATVLVQKEVAQRLVAQPGQDNYGFLSAVAALYGSVK 193

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            + D+    FFP+P VTS+V+         P    +       A   RRKTLR +L+ +G
Sbjct: 194 HVRDVPKGAFFPAPDVTSSVVRLDFDRTR-PQPDPAFVSFVDNALRYRRKTLRNNLRMMG 252

Query: 246 -----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
                 +  L   G+  ++RAE++ +     +   L
Sbjct: 253 HSGEAIDAALSDLGLRPDVRAEDVPLSGLRAVAAAL 288


>gi|291395424|ref|XP_002714103.1| PREDICTED: dimethyladenosine transferase [Oryctolagus cuniculus]
          Length = 308

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/280 (26%), Positives = 124/280 (44%), Gaps = 19/280 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           +    + + S   ++  K +GQ+ L +  ++  I E +       V+E+G G GN+T  L
Sbjct: 10  RREERRELKSAGGLVFNKGIGQHILKNPLVVNSIIEKAALRPTDVVLEVGPGTGNMTVKL 69

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KVI  E D +    L       P  ++L+++  D LK +   F         +A
Sbjct: 70  LE-KAKKVIACELDPRLVAELHKRVQGTPLASKLQVMVGDVLKTELPFF------DTCVA 122

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I +  +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +
Sbjct: 123 NLPYQISSPFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLAR 179

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
              +  +  + F P PKV S+V+   P   P P   +    + +  F ++ KTL  + K 
Sbjct: 180 VDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKS 239

Query: 244 LGGENLLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278
              + LL +       +   +  E+ SI D  +I  ILT 
Sbjct: 240 SAVQQLLEKNYRIHCSVHNIIIPEDFSIAD--KIQQILTS 277


>gi|198466094|ref|XP_001353894.2| GA20255 [Drosophila pseudoobscura pseudoobscura]
 gi|224471856|sp|Q2LZ79|TFB1M_DROPS RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
           AltName: Full=Mitochondrial transcription factor B1;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
           Precursor
 gi|198150443|gb|EAL29629.2| GA20255 [Drosophila pseudoobscura pseudoobscura]
          Length = 337

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 145/292 (49%), Gaps = 19/292 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64
              +++ ++  YK+   K + QNFL+D  +  KI +S+G       V+E+G GPG +T+ 
Sbjct: 17  PLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRS 76

Query: 65  LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIR 120
           +L    +++I++EKD++F     +L++ +S    +++I  DD L+ + E+   + +  I 
Sbjct: 77  ILRRQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDTTQRIH 136

Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +I NLP++I TRLL NW +        +      +TL FQKEV ERI A   S    RLS
Sbjct: 137 LIGNLPFSISTRLLINWYADLAARRGAFRRNDTCMTLTFQKEVAERICAPVGSEQRCRLS 196

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234
           V++   T+  M F I    F P P+V   V+  IP   P        ++++ +  F  R+
Sbjct: 197 VMSQIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFSLVERVVRHIFSMRQ 256

Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           K  R+    L   +        L  +A +   LR+  LS+    R+ +   +
Sbjct: 257 KYCRRGYGTLLPPDSREETTQTLFQRADVRDTLRSFELSVPQCLRLADAYAE 308


>gi|288930049|ref|ZP_06423889.1| dimethyladenosine transferase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288328619|gb|EFC67210.1| dimethyladenosine transferase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 267

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 128/270 (47%), Gaps = 15/270 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL DL I ++IA++  +   + ++E+G G G LTQ L T   R + V+E 
Sbjct: 4   VRPKKHLGQHFLTDLGIAQRIADTVDACPELPILEVGPGMGVLTQYLATKN-RPLRVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L +          ++ +D L++D    F    P  +  N PY+I +++ F  +
Sbjct: 63  DTESVAFLYNNFPLLAEN--VLGEDFLRMDLASVFT-GQPFVLTGNYPYDISSQIFFKML 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P     T + Q+EV  RI +Q  +  YG LSVL         +F +   VF P 
Sbjct: 120 DNKHLIP---CCTGMIQREVALRIASQPGTKAYGILSVLIQAWYDVEYLFTVDETVFNPP 176

Query: 199 PKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQ 252
           PKV S VI      +  + C     K++ +  F +RRK LR SL++L            Q
Sbjct: 177 PKVKSAVIRMARNKVENLGCNEILFKRVVKTVFNQRRKMLRVSLRQLFAGMPASPEFYAQ 236

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDI 282
                  R E LS+ +F ++TN++    + 
Sbjct: 237 EMF--TRRPEQLSVAEFVQLTNMVEQEMNA 264


>gi|167038742|ref|YP_001661727.1| dimethyladenosine transferase [Thermoanaerobacter sp. X514]
 gi|300913673|ref|ZP_07130990.1| dimethyladenosine transferase [Thermoanaerobacter sp. X561]
 gi|307723312|ref|YP_003903063.1| dimethyladenosine transferase [Thermoanaerobacter sp. X513]
 gi|166852982|gb|ABY91391.1| dimethyladenosine transferase [Thermoanaerobacter sp. X514]
 gi|300890358|gb|EFK85503.1| dimethyladenosine transferase [Thermoanaerobacter sp. X561]
 gi|307580373|gb|ADN53772.1| dimethyladenosine transferase [Thermoanaerobacter sp. X513]
          Length = 273

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 139/264 (52%), Gaps = 16/264 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            GQNF+ D NIL KI  +SG      V+EIG G G LT+ L     +KV+  E D++ + 
Sbjct: 12  WGQNFIFDKNILAKIVIASGVALEDFVLEIGTGLGTLTEELAKR-VKKVVSFEIDRELYE 70

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISAD 141
             K+  + + N + I+ +D +K D  +  N      P +++ANLPY I + ++   +   
Sbjct: 71  ATKEKLNIY-NNVIIMNEDIMKADLNRIANEYFEGKPFKVVANLPYYITSPIIMMLLECK 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
               F + +T+L QKEV ERI A   +  YG L+V   ++ K  ++F++ P VF P PKV
Sbjct: 130 ----FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKILFNLPPSVFVPPPKV 185

Query: 202 TSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----G 254
            S+++       P+    +      + + AFG+RRK L  +LK LG  + ++ +A     
Sbjct: 186 DSSLVKLEILDKPLVEVKDEALFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSN 245

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           +    R E LSIE+F  + N++ D
Sbjct: 246 LSHQRRGETLSIEEFTALANVIYD 269


>gi|195174159|ref|XP_002027848.1| GL16283 [Drosophila persimilis]
 gi|194115524|gb|EDW37567.1| GL16283 [Drosophila persimilis]
          Length = 337

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 146/292 (50%), Gaps = 19/292 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64
              +++ ++  YK+   K + QNFL+D  +  KI +S+G       V+E+G GPG +T+ 
Sbjct: 17  PLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRS 76

Query: 65  LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIR 120
           +L    +++I++EKD++F     +L++ +S    +++I  DD L+ + E+   +++  I 
Sbjct: 77  ILRRQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDMTQRIH 136

Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +I NLP++I TRLL NW +        +      +TL FQKEV ERI A   S    RLS
Sbjct: 137 LIGNLPFSISTRLLINWYADLAARRGAFRRNDTCMTLTFQKEVAERICAPVGSEQRCRLS 196

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234
           V++   T+  M F I    F P P+V   V+  IP   P        ++++ +  F  R+
Sbjct: 197 VMSQIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFSLVERVVRHIFSMRQ 256

Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           K  R+    L   +        L  +A +   LR+  LS+    R+ +   +
Sbjct: 257 KYCRRGYGTLLPPDSREETTQTLFQRADVRDTLRSFELSVPQCLRLADAYAE 308


>gi|87124270|ref|ZP_01080119.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. RS9917]
 gi|86167842|gb|EAQ69100.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. RS9917]
          Length = 280

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/275 (28%), Positives = 121/275 (44%), Gaps = 11/275 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++L D  +L++I +++    G  V+E+G G G LT+ LL      V  +E
Sbjct: 5   GHTARKRFGQHWLRDDQVLERILQAADLQAGDRVLEVGPGRGALTERLLASPVASVHAVE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   +  P R  + + D L V  E         +++AN+PYNI   LL   
Sbjct: 65  LDRDLVVGLRQRFAAEP-RFSLQEGDVLAVALEG-PGGCRATKVVANIPYNITGPLLERL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     P  P ++SL LL QKEV ERI A+     +  LSV        + +  + P  F
Sbjct: 123 VGRLDRPVDPPYQSLVLLVQKEVAERIRARPGQSSFSALSVRMQLLAYCSSVCPVPPRCF 182

Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251
            P PKV S V+   P              ++++ + AF  RRK LR +L  L   + L  
Sbjct: 183 QPPPKVQSEVVRLDPLPADQRLPVELARDVERLLRMAFLARRKMLRNTLAPLAAPDQLQA 242

Query: 252 ---QAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
               AGI+   R + ++   +  +   L      A
Sbjct: 243 LAGAAGIDLQQRPQEIAPAAWVALARGLNQADPAA 277


>gi|124005897|ref|ZP_01690735.1| dimethyladenosine transferase [Microscilla marina ATCC 23134]
 gi|123988580|gb|EAY28221.1| dimethyladenosine transferase [Microscilla marina ATCC 23134]
          Length = 258

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/260 (34%), Positives = 130/260 (50%), Gaps = 11/260 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           + PKK++GQ+FL DL+I ++I       +G  T++EIGAG G LT  L+     +  +IE
Sbjct: 2   VKPKKHLGQHFLTDLSIAERIVNQVQQHNGYKTIVEIGAGTGVLTDFLVKSDNFQTHIIE 61

Query: 78  KDQQFFPILKDISSQHPNRL-EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D +    L      +P  +  I + D L +D    F   S I II N PYNI +++ F 
Sbjct: 62  IDTESVEYLHK---HYPTLVPYITEGDFLNIDLGALFKQQS-IGIIGNFPYNISSQIFFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +         + +  + QKEV ERI AQ  S  YG LSVL       +  F + P VF 
Sbjct: 118 VLDHRDQ---VQEVVCMLQKEVAERIAAQPGSKTYGILSVLLQAYYHISYDFTVPPDVFN 174

Query: 197 PSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S VI      +  + C  +  K+I ++ F  RRKTLR +LK +   + L    +
Sbjct: 175 PPPKVYSGVISLQRNKVKKLDCDEKLFKRIVKQGFNNRRKTLRNALKSIQLPDTLKPNEM 234

Query: 256 ETNLRAENLSIEDFCRITNI 275
             N RAE LS+  F  +T +
Sbjct: 235 -LNKRAEQLSVAHFVELTQL 253


>gi|281348842|gb|EFB24426.1| hypothetical protein PANDA_004390 [Ailuropoda melanoleuca]
          Length = 298

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 122/275 (44%), Gaps = 19/275 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + + S   ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A
Sbjct: 18  RELKSAGGLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KA 76

Query: 71  RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI  E D +    L       P  ++L+++  D LK D   F         +ANLPY 
Sbjct: 77  KKVIACELDPRLVAELHKRVQGTPLASKLQVLVGDVLKTDLPFF------DACVANLPYQ 130

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I +  +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   + 
Sbjct: 131 ISSPFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM 187

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            +  + F P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + 
Sbjct: 188 KVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQ 247

Query: 249 LLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278
           LL +       +   +  E+ SI D  +I  ILT 
Sbjct: 248 LLEKNYRIHCSVHNIIIPEDFSIAD--KIQQILTS 280


>gi|296194498|ref|XP_002806669.1| PREDICTED: LOW QUALITY PROTEIN: probable dimethyladenosine
           transferase-like [Callithrix jacchus]
          Length = 313

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 19/275 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + + S   ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A
Sbjct: 20  REVKSAGGLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KA 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KV+  E D +    L       P  ++L+++  D LK D   F         +ANLPY 
Sbjct: 79  KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DACVANLPYQ 132

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I +  +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   + 
Sbjct: 133 ISSPFVFKLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM 189

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            +  + F P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + 
Sbjct: 190 KVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQ 249

Query: 249 LLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278
           LL +       +   +  E+ SI D  +I  ILT 
Sbjct: 250 LLEKNYRIHCSVHNIIIPEDFSIAD--KIQQILTS 282


>gi|301064596|ref|ZP_07204992.1| dimethyladenosine transferase [delta proteobacterium NaphS2]
 gi|300441344|gb|EFK05713.1| dimethyladenosine transferase [delta proteobacterium NaphS2]
          Length = 282

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/270 (31%), Positives = 120/270 (44%), Gaps = 17/270 (6%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P K +GQNFL+D  I  KI   S      TV+EIG G G LT  L     + ++ +EKD
Sbjct: 14  RPNKRLGQNFLVDPGISVKIVSLSRFTPEDTVLEIGPGKGALTIPLAAR-VKHILAVEKD 72

Query: 80  QQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIR-IIANLPYNIGTRLLFNW 137
            +    L +       N + ++  D LK+D+    +       +I NLPYNI + LL   
Sbjct: 73  GRLADWLDNRLKMAGINNVTLLHGDILKLDWLDLKSYFPGRMPVIGNLPYNISSPLLEKM 132

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                W        L+FQKEV  R+TA   S  YG LS+L  +  +      +    FFP
Sbjct: 133 CEKPQW---IAQAILMFQKEVARRLTAVTGSKAYGALSLLVQYHAEVLSRLTVLKGSFFP 189

Query: 198 SPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGGE------- 247
            PKV S V+       P P         KK+ + AF  RRKT+  SL     +       
Sbjct: 190 VPKVDSMVVSLD-FEKPYPRRAVNEAVFKKVVKGAFMHRRKTIINSLSGALPDQTRESLL 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             L   GI+ + R E L + DF R+++ L 
Sbjct: 249 EALAACGIDPSKRGEALEMGDFLRLSSALQ 278


>gi|300778905|ref|ZP_07088763.1| dimethyladenosine transferase [Chryseobacterium gleum ATCC 35910]
 gi|300504415|gb|EFK35555.1| dimethyladenosine transferase [Chryseobacterium gleum ATCC 35910]
          Length = 256

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/263 (33%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL D NI +KI E     +   ++E+G G G LT+ LL    + + + E 
Sbjct: 3   VKAKKHLGQHFLTDENIARKIVEGLSFENYNNIMEVGPGMGVLTKYLLE-KDQNIYLAEI 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    LK+  ++      +   D LK DF   F     I II N PYNI +++LF  +
Sbjct: 62  DTESIEYLKNNYTKVTEETFV--GDFLKQDFN--FIKEDQIAIIGNFPYNISSQILFQIV 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P    +  +FQKEV ER  A   +  YG LSVL       + MF +  +VF P 
Sbjct: 118 DHYQLIP---EMVGMFQKEVAERTAAVPRTKDYGILSVLIQAYYDVSYMFTVHENVFNPP 174

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +        E L K I +  F +RRK L  +LK L     L       
Sbjct: 175 PKVKSGVIRLTRNPKEGLAGNEVLFKQIVKAGFNQRRKKLSNALKILNTPEALKGHEF-L 233

Query: 258 NLRAENLSIEDFCRITNILTDNQ 280
           + RAE LS+ DF    N+  +NQ
Sbjct: 234 DKRAEELSVADFIHFANLWKENQ 256


>gi|167533147|ref|XP_001748254.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773374|gb|EDQ87015.1| predicted protein [Monosiga brevicollis MX1]
          Length = 345

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 12/238 (5%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
              I+  K  GQ+ L +  +++ I + +      TV+EIG G GNLT  LL  G +KV+ 
Sbjct: 32  KSGIVFNKDFGQHILKNPLVVQGIIDKAAIKSTDTVLEIGPGTGNLTVKLLEKG-KKVVA 90

Query: 76  IEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            E D +    L+      P   +L ++  D LK D   FF++      +AN+PY I +  
Sbjct: 91  CEVDPRLAAELQKRVMGTPLHRKLHLVMGDVLKADLP-FFDVC-----VANMPYQISSPF 144

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F  +      P +    L+FQ+E  +R+ A+     Y RLSV T    +   +  +  +
Sbjct: 145 VFKIL---LHRPLFRCAVLMFQREFAQRLVAKPGDALYCRLSVNTQLLARVDHVMKVGRN 201

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P PKV S+V+   P   P P   E    + + AF ++ KTL           LL 
Sbjct: 202 NFRPPPKVESSVVRIEPRNPPPPVDFEEWDGLLRIAFIRKNKTLAACFHSKSVLKLLE 259


>gi|239930763|ref|ZP_04687716.1| dimethyladenosine transferase [Streptomyces ghanaensis ATCC 14672]
 gi|291439129|ref|ZP_06578519.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291342024|gb|EFE68980.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 293

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 124/288 (43%), Gaps = 18/288 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL
Sbjct: 13  PADVRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 72

Query: 67  TLGARKVIVIEKDQQFFPILKD----ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V  +E D      L             R  ++  DA+ V         +P  ++
Sbjct: 73  E-AADRVTAVEIDDVLAAALPATVAARVPGRAERFALVHSDAMHVTE---LPGPAPTALV 128

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 129 ANLPYNVAVPVLLHMLET---FPSIERTLVMVQSEVADRLAAAPGSKVYGVPSVKANWYA 185

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQS 240
           +      I  +VF+P+P V S ++  +    P         +  +   AF +RRKTLR +
Sbjct: 186 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPPKTTASRREVFAVVDAAFAQRRKTLRAA 245

Query: 241 LKRLGGENLLHQAG-----IETNLRAENLSIEDFCRITNILTDNQDIA 283
           L    G     +A      +    R E+L++E+F RI       +  A
Sbjct: 246 LAGWAGSAAAAEAALVAAGVSPQARGESLTVEEFARIAEHAPHKESAA 293


>gi|291298533|ref|YP_003509811.1| dimethyladenosine transferase [Stackebrandtia nassauensis DSM
           44728]
 gi|290567753|gb|ADD40718.1| dimethyladenosine transferase [Stackebrandtia nassauensis DSM
           44728]
          Length = 281

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 131/283 (46%), Gaps = 16/283 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT    +  ++ I     + P K +GQNF++D N +++IAE++       VIE+G G G+
Sbjct: 1   MTELLGAADIRRIAEALTVRPAKALGQNFVIDGNTVRRIAEAAKLSPDDIVIEVGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           LT  LL   A++V  +E D +    L       +     +L +   DA+ V  + F    
Sbjct: 61  LTLALLP-KAKRVHAVEIDARLASALTATVNSRAGDDAAKLRVHHADAMTVAEDGF--DE 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P  ++ANLPYN+   ++ + +++    P      ++ Q EV ER+TA+  +  YG  S+
Sbjct: 118 PPTALVANLPYNVAVPVVLHLLAS---LPSLRQGLVMVQSEVAERLTAKPGTKIYGIPSL 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
              W   A     +   VF+P P V S ++ F     P P     +      AF +RRKT
Sbjct: 175 KLAWYASARRAGTVPRGVFWPVPNVDSGLVAFE-RREPPPGDRREVFAAVDAAFAQRRKT 233

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           LR +L    G     E +L  A ++   R E L I  F RI  
Sbjct: 234 LRIALSDWAGGPDRAEAILRAADVDPRTRGEALDITTFARIAR 276


>gi|255016922|ref|ZP_05289048.1| dimethyladenosine transferase [Listeria monocytogenes FSL F2-515]
          Length = 255

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/257 (30%), Positives = 127/257 (49%), Gaps = 21/257 (8%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           +I +++       VIEIG G G LT+ L      +V+  E DQ+  PIL D  S + N +
Sbjct: 3   RITDTAEITKETNVIEIGPGIGALTEQLAKT-TNEVVAFEIDQRLLPILDDTLSAY-NNV 60

Query: 98  EIIQDDALKVDFEK-----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
           +++  D LK D E+     F     P++I+ANLPY + T ++   +  +      +S+T 
Sbjct: 61  KVVHGDVLKADVEEVIAEQFAKPELPLKIVANLPYYVTTPIILKLLHDNIPA---DSMTF 117

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + QKEV +RI+A  ++  YG L++   +  +A + F +   VF P P V S VIH     
Sbjct: 118 MLQKEVADRISAVPSTKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLKRRK 177

Query: 213 NPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRA 261
            P+      E   ++T+ +F +RRKTL  +L                 L+  GI+   R 
Sbjct: 178 EPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGIDLIRRG 237

Query: 262 ENLSIEDFCRITNILTD 278
           E L I +F +++N L D
Sbjct: 238 ETLDIPEFAKLSNFLGD 254


>gi|167750299|ref|ZP_02422426.1| hypothetical protein EUBSIR_01273 [Eubacterium siraeum DSM 15702]
 gi|167656659|gb|EDS00789.1| hypothetical protein EUBSIR_01273 [Eubacterium siraeum DSM 15702]
          Length = 287

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 17/289 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +   +++ +   +     K +GQNFL++  +  KIAE  G+   +  IEIG G G 
Sbjct: 1   MKLTD-ISTIRQLFEKHGFSFTKSLGQNFLINPTVCPKIAEMGGAGKNVGAIEIGTGIGV 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ L      KV  IE D    PIL +   ++ N +E+I  D ++ D  K      P  
Sbjct: 60  LTRELAKRC-EKVAAIEIDTGLKPILDETLEEYDN-VEVIFADVMETDLNKLIAEKFPDM 117

Query: 121 ---IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
              + ANLPY I + ++   +         +++T++ Q E  +RI A   S   G ++  
Sbjct: 118 DVIVCANLPYYITSPVIMKLLEEKLP---IKAITVMVQLEAADRICAAVGSRECGAITAS 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             +  K   +F ++   F P+P V S VI    +  P           ++ ++AF +RRK
Sbjct: 175 INYYAKPKKLFRVNRGSFMPAPNVDSAVISLERYEQPPYKVDNEPLFFEVIKQAFAQRRK 234

Query: 236 TLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            L   +              + + GI    RAE L++ +  ++  I+ +
Sbjct: 235 QLANPVSAYFKIPKAVLAEKMTEGGIPATARAEQLTMAELVKLYEIIDE 283


>gi|20090300|ref|NP_616375.1| dimethyladenosine transferase [Methanosarcina acetivorans C2A]
 gi|27151576|sp|Q8TQU8|RSMA_METAC RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|19915300|gb|AAM04855.1| dimethyladenosine rRNA methyltransferase [Methanosarcina
           acetivorans C2A]
          Length = 269

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 142/278 (51%), Gaps = 23/278 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +++IL+ Y I       Q+FL+D+  L +I  ++      T++EIGAG GNLT+ L    
Sbjct: 2   VRSILNKYNIKG-GTFDQHFLIDIGYLDRIVVAAELSPQDTILEIGAGIGNLTERLARR- 59

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI +E D     +L D   +  N +E+I  DALKVDF +F       ++++NLPY+I
Sbjct: 60  AKKVIAVELDPALVSVLHDRFDKVEN-IEVIAGDALKVDFPEF------DKVVSNLPYSI 112

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F  +        ++   L++Q E   R+ +      Y RL+V T +   A+++  
Sbjct: 113 SSEITFKLLRYK-----FKLGILMYQYEFAARMVSPPGRKDYSRLTVDTYYFADASILMK 167

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQS-------L 241
           +    F P+P+V S V+  +P  +P     E+   +     F +RRK LR S       L
Sbjct: 168 VPKGAFQPAPEVDSAVVKLVPRPSPFEVRDEAFFLEFVAAVFSQRRKKLRNSILNTNSML 227

Query: 242 KRLGGENLLHQAGIET-NLRAENLSIEDFCRITNILTD 278
           K    + +++Q   +  N RAENL+ E+   + N+L D
Sbjct: 228 KIPDIKEVVNQLPDDFVNKRAENLTPEELASVANMLFD 265


>gi|148907015|gb|ABR16651.1| unknown [Picea sitchensis]
          Length = 346

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 14/256 (5%)

Query: 1   MTMNNKSHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           M    +  +  +    +   I  +K  GQ+ L +  +++ I + +G      V+EIG G 
Sbjct: 1   MAGGKERKTRASAAQRHQGGIQFQKSKGQHILKNPMLVQTIVQKAGIKSTDIVLEIGPGT 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNIS 116
           GNLT  LL + A+KVI +E D +    L+       +  RL++IQ D LK +   F    
Sbjct: 61  GNLTMKLLEV-AKKVIAVELDPRMVLELQRRVQGTSSAIRLQVIQGDVLKSELPYF---- 115

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
                +AN+PY I + L F  +S     P +    ++FQ+E   R+ A+     Y RLSV
Sbjct: 116 --DVCVANIPYQISSPLTFKLLSHR---PIFRCAIIMFQREFAMRLVAKPGDNLYCRLSV 170

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
            T    + + +  +  + F P PKV S+V+   P     P   +    + +  F ++ KT
Sbjct: 171 NTQLLARVSHLLKVGKNNFRPPPKVDSSVVRIEPRNPLPPISFKEWDGMVRLCFNRKNKT 230

Query: 237 LRQSLKRLGGENLLHQ 252
           L    ++    +LL +
Sbjct: 231 LGAIFRQKAILSLLEK 246


>gi|157103251|ref|XP_001647892.1| dimethyladenosine transferase [Aedes aegypti]
 gi|157126646|ref|XP_001654689.1| dimethyladenosine transferase [Aedes aegypti]
 gi|108873212|gb|EAT37437.1| dimethyladenosine transferase [Aedes aegypti]
 gi|108884724|gb|EAT48949.1| dimethyladenosine transferase [Aedes aegypti]
          Length = 306

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 126/302 (41%), Gaps = 40/302 (13%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +K   + T ++   I+  K  GQ+ L +  I+  + + +G      V+EIG G GN+T  
Sbjct: 7   DKKSRVHTDVAKQGIVFNKDFGQHILKNPLIVTSMLDKAGLRPTDVVLEIGPGTGNMTVK 66

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122
           LL    +KV+  E D +    L+      P  ++L+I+  D LK D   F         +
Sbjct: 67  LLE-KVKKVVACEIDPRLVAELQKRVQGTPMQSKLQILIGDVLKADLPFF------DCCV 119

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           AN+PY I +  +F  +      PF+    L+FQ E  +R+ A+     Y RLSV T    
Sbjct: 120 ANMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEFAQRLVAKPGDKLYCRLSVNTQLLA 176

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +  M+  +  + F P PKV S+V+   P     P        +T+ AF ++ KTL  + K
Sbjct: 177 RVDMLMKVGKNNFRPPPKVESSVVRIEPRNPSPPINYTEWDGLTRIAFLRKNKTLAAAFK 236

Query: 243 RLGGENLLHQ---------------------------AGIETNL-RAENLSIEDFCRITN 274
           +      L Q                           A I+    RA  + I+DF  + +
Sbjct: 237 QTSVMTALEQNFKMQCSLKNQDLPEGFSIKEKVEGILAKIDAGAKRARTMDIDDFMAVLH 296

Query: 275 IL 276
             
Sbjct: 297 AF 298


>gi|170016041|ref|NP_001116194.1| DIM1 dimethyladenosine transferase 1-like [Xenopus (Silurana)
           tropicalis]
 gi|169641837|gb|AAI60444.1| LOC779588 protein [Xenopus (Silurana) tropicalis]
          Length = 306

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 15/267 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +    ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A++V
Sbjct: 16  VKSQGVLFNTVLGQHILKNPLIVNSIIDKAAIRPTDVVLEVGPGTGNMTMKLLE-KAKRV 74

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +  E D +    L+         ++L+++  D LK D   FF++      +ANLPY I +
Sbjct: 75  VACELDTRLVAELQKRVQGSAVASKLQVMVGDVLKTDLP-FFDLC-----VANLPYQISS 128

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  + 
Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHIMKVG 185

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P   P P   +    + + AF ++ KTL  + K    + LL 
Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAAAFKSTAVQELLE 245

Query: 252 QA-GIETNLRAENLSIEDFCRITNILT 277
           +   I  +L   N+S+ +   I   + 
Sbjct: 246 KNYKIHCSL--HNISVPENFSIAEKIE 270


>gi|72382118|ref|YP_291473.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL2A]
 gi|119365047|sp|Q46L58|RSMA_PROMT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|72001968|gb|AAZ57770.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL2A]
          Length = 291

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 132/275 (48%), Gaps = 12/275 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L+ ++ IP+K  GQ++L D  +L +I +++       V+E+G G G LT+ L+   AR +
Sbjct: 7   LNDFRHIPRKRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQARFI 66

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             IE D+     LK   S H N+  + + D L    +    ++   +++AN+PYNI   L
Sbjct: 67  QAIELDRDLVVGLKKRFS-HQNKFSLREGDILSAPLDAENGLTIN-KVVANIPYNITGPL 124

Query: 134 LFNWISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           L   I      P   +E+L LL QKEV +R+ A+  + ++  LSV      K   + D+ 
Sbjct: 125 LKRLIGELRKAPDNCFETLVLLMQKEVAQRLLARPGTSNFSALSVRIQLLAKCQDVCDVP 184

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGG-- 246
              F P+PKV S V+   P  +  P   E    L+K+ + AF  RRK LR ++       
Sbjct: 185 SKCFQPAPKVDSKVVMIKPFASIDPDFYEVGNLLEKLLKHAFAGRRKKLRNTIGSFVTSN 244

Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              +      GI  + R + +S  ++  +   L +
Sbjct: 245 DQIKEFFAYRGISLDQRPQEISPSNWFGLAKALKE 279


>gi|315656078|ref|ZP_07908969.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493080|gb|EFU82680.1| dimethyladenosine transferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 309

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 144/297 (48%), Gaps = 34/297 (11%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  +  + +  ++ P K  GQNF+ D   +++IA ++G   G TV+EIG G G+LT  LL
Sbjct: 6   ARDVSELCALLEVSPSKKKGQNFVTDPGTVRRIAAAAGISPGDTVVEIGPGLGSLTLALL 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKV----DFEKFFNISSPI 119
            LG  KVI IE DQ+    L    +QH      L ++  DAL++    D E     ++P 
Sbjct: 66  ELGC-KVIAIEIDQRLATALPVTVAQHGANSADLCVMTQDALEIAGEADLELPTGWAAPH 124

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R++ANLPYN+ T LL +++      P  ES  ++ Q EV +R  A      YG  SV   
Sbjct: 125 RLVANLPYNVATPLLLHFLE---VLPGLESALVMVQAEVADRWVAGVADGDYGAPSVKLA 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL------------------NPIPCCLES 221
           W  +A   F +  +VF+P P V STV+ F                        I    + 
Sbjct: 182 WWGRAKRAFKVGRNVFYPVPNVDSTVVEFRRLEVRQRLKDDLKLSAEGLTDEAIETLRQE 241

Query: 222 LKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           +      AF +RRKTLRQSL    G      NLL  AGI   LRAE LS+ DF +I 
Sbjct: 242 VFAAVNAAFSQRRKTLRQSLAGYAGSPNAAANLLEAAGITPGLRAERLSVIDFTKIA 298


>gi|15226591|ref|NP_182264.1| dimethyladenosine transferase, putative [Arabidopsis thaliana]
 gi|2529685|gb|AAC62868.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
 gi|14532650|gb|AAK64053.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
 gi|21280901|gb|AAM44912.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
 gi|330255745|gb|AEC10839.1| dimethyladenosine transferase [Arabidopsis thaliana]
          Length = 353

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 14/251 (5%)

Query: 6   KSHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
              S +   +HY   I   K  GQ+ L +  ++  I + +G      ++EIG G GNLT+
Sbjct: 11  PKASNRAPSNHYQGGISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTK 70

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI 121
            LL  G ++VI +E D +    L+      P  NRL++IQ D LK +  +F         
Sbjct: 71  KLLEAG-KEVIAVELDSRMVLELQRRFQGTPFSNRLKVIQGDVLKTELPRF------DIC 123

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +AN+PY I + L F  +     P  +    +++Q+E   R+ AQ     Y RLSV T   
Sbjct: 124 VANIPYQISSPLTFKLL---FHPTSFRCAVIMYQREFAMRLVAQPGDNLYCRLSVNTQLY 180

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            + + +  +  + F P PKV S+V+   P         +      +  F ++ KTL    
Sbjct: 181 ARVSHLLKVGKNNFRPPPKVDSSVVRIEPRRPGPQVNKKEWDGFLRVCFIRKNKTLGSIF 240

Query: 242 KRLGGENLLHQ 252
           K+    ++L +
Sbjct: 241 KQKSVLSMLEK 251


>gi|149732873|ref|XP_001493943.1| PREDICTED: similar to Dimethyladenosine transferase [Equus
           caballus]
          Length = 313

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 19/268 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KVI  E
Sbjct: 27  GLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P   +L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPLAGKLQVMVGDVLKTDLPFF------DACVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQRLLEKNYR 256

Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278
               +   +  E+ SI D  +I  ILT 
Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282


>gi|284038180|ref|YP_003388110.1| dimethyladenosine transferase [Spirosoma linguale DSM 74]
 gi|283817473|gb|ADB39311.1| dimethyladenosine transferase [Spirosoma linguale DSM 74]
          Length = 271

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/274 (30%), Positives = 131/274 (47%), Gaps = 17/274 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAES------SGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           + PKK +GQ+FL DL+I ++IAE       +  +    V+EIG G G LTQ LL      
Sbjct: 3   VKPKKELGQHFLKDLSIAQRIAELLTGHAGADGVPYTKVLEIGPGTGVLTQFLLQNSQFD 62

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYN 128
             VIE D++    LK        R  I+  D L +  +       + + P  +I N PYN
Sbjct: 63  TYVIEIDRESVEYLKQYVPALEGR--ILASDFLNIRPDLLPTKQPDNTEPFAVIGNFPYN 120

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T++LF  +      P    +  +FQ+EV +R+ +   +  YG LSVL          F
Sbjct: 121 ISTQILFKVLDMRDRVP---EVVGMFQREVAQRVASGPGNKDYGILSVLLQAWYDIKYEF 177

Query: 189 DISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            + P VF P PKV S VI    +    + C ++   ++ +  F +RRKTLR +LK L   
Sbjct: 178 TVDPSVFNPPPKVFSGVISLKRNAVTDLGCDVKKFTQVVKHGFSQRRKTLRNALKPLSPS 237

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
                +    + RAE L + +F  +T ++++  +
Sbjct: 238 EAALASPF-MDKRAEQLGVAEFVALTILMSERAE 270


>gi|284928980|ref|YP_003421502.1| dimethyladenosine transferase [cyanobacterium UCYN-A]
 gi|284809439|gb|ADB95144.1| dimethyladenosine transferase [cyanobacterium UCYN-A]
          Length = 274

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 13/270 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P+K  GQ++L D  +L++I +S+       V+EIG G G LT  LL      V  IE 
Sbjct: 2   IYPRKRFGQHWLKDNTVLERIIKSAHLTKIDKVLEIGPGTGILTSRLLPE-VSSVTAIEV 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLL 134
           D+  +  L      +   L ++Q+D LK+D       +       +++AN+PYNI   +L
Sbjct: 61  DRDLYEQLVKKF-HYCKNLLLLQEDILKIDLFTEISNYNLFWPMNKVVANIPYNITNPIL 119

Query: 135 FNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
              + + + P    +E + LL QKEV +RITA   +  YG LS    +      + D+  
Sbjct: 120 EKLLGSVSEPYNLPYEIIVLLVQKEVAKRITALPGNKMYGALSAKIQYLAHCNYICDVPS 179

Query: 193 HVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGE 247
             F+P+PKV S +I   PH L+        L+K+    F  RRK L  +LK +       
Sbjct: 180 KAFYPAPKVDSAIITLRPHILDSSVLNRPHLEKLINLGFSSRRKMLHNNLKSIMDIKYIT 239

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             L +  ++  +RAENLSI  +  ++N L 
Sbjct: 240 EFLEKNNLDLKVRAENLSINQWIELSNYLY 269


>gi|226227288|ref|YP_002761394.1| dimethyladenosine transferase [Gemmatimonas aurantiaca T-27]
 gi|226090479|dbj|BAH38924.1| dimethyladenosine transferase [Gemmatimonas aurantiaca T-27]
          Length = 303

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 16/265 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K  GQ+FL D  +L  IA++ G +   TVIEIG G G LT +L+   AR+VI IE D+
Sbjct: 27  PRKRFGQHFLKDTRVLSSIADALGDVRDRTVIEIGPGRGALTDLLVER-ARRVIAIEIDR 85

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   +  P+ +EI++ D L+ +         P  +  N+PY I T ++F+ +  
Sbjct: 86  DLAAHLRARYADRPH-VEIVEADVLQTNLAALA--GEPYVLAGNVPYYITTPIIFHALVQ 142

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P  +    L QKEV +R+ A      YG LSV         ++  + P  F P+P 
Sbjct: 143 ----PRPDVAVYLVQKEVADRMAAPPGDKIYGALSVNLQAVVGVELIRKVPPSAFNPAPA 198

Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL------LHQ 252
           V S V+  +P  + +  P      +     AFG RRK L + ++ +   +       +  
Sbjct: 199 VDSAVVRVVPRPDAVVEPELEARFRSFVLAAFGLRRKQLIRVVRTIASFDAERAGAVIAA 258

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
            G+    R E L+  +F ++   L 
Sbjct: 259 CGLSPEARPETLTPAEFAKLVRALR 283


>gi|56751211|ref|YP_171912.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301]
 gi|81299122|ref|YP_399330.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942]
 gi|62900470|sp|Q5N2S8|RSMA_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119365855|sp|Q31RH6|RSMA_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|56686170|dbj|BAD79392.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301]
 gi|81168003|gb|ABB56343.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942]
          Length = 279

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 127/275 (46%), Gaps = 13/275 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            +K  GQ++L    IL +I  ++       V+EIG G G LTQ LL      ++ +E D+
Sbjct: 3   ARKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLA-AVDGLVAVELDR 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----PIRIIANLPYNIGTRLLFN 136
                L+    Q  N   +++ D L++D+            P +++AN+PYNI   +L +
Sbjct: 62  DLIGQLQQRFGQAEN-FCLLEGDILQLDWTAAIADRPRFANPSKVVANIPYNITGPILQS 120

Query: 137 WISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            +     P  P +E L LL Q+EV +R+ A      YG LSV   +      +  + P  
Sbjct: 121 LLGTIAQPRRPAFERLVLLVQQEVADRLCATPGQRAYGALSVRVQYLASCERVCAVPPKS 180

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F P PKV STVI   P   P  C     L+K+  + F  +RK LR +LK L     +  A
Sbjct: 181 FSPPPKVQSTVICLKPRPWPQVCNNPGRLEKLLNQGFSAKRKMLRNNLKSLYSSEQIEAA 240

Query: 254 G----IETNLRAENLSIEDFCRITNILTDNQDIAI 284
                I    RAE LSI+ +  +   L D  D AI
Sbjct: 241 FAAHQIAPEARAETLSIDQWIGLCTDLGDPTDSAI 275


>gi|329114154|ref|ZP_08242916.1| Ribosomal RNA small subunit methyltransferase A [Acetobacter
           pomorum DM001]
 gi|326696230|gb|EGE47909.1| Ribosomal RNA small subunit methyltransferase A [Acetobacter
           pomorum DM001]
          Length = 227

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 93/224 (41%), Positives = 132/224 (58%), Gaps = 6/224 (2%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           E+G GPG LT+ LL   A  V  +E D +   ++++++  +PNRL++++ DALK D  + 
Sbjct: 2   EVGPGPGGLTRALLNGPAESVTAVELDSRAVLVIQELAGFYPNRLKVVEADALKCDLTEL 61

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
              ++P +IIANLPYN+ T LL  W+        WE LTL+FQ EV ERI A  NS HYG
Sbjct: 62  --CAAPRQIIANLPYNVATPLLIGWLRQGNA---WERLTLMFQWEVAERICAAPNSQHYG 116

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFG 231
           RL+VL  W  +  ++  + P  F P P V S V    PH   P P   ++++++T  AFG
Sbjct: 117 RLAVLAQWCAECAIVMKLPPGAFSPPPAVWSAVASITPHAQQPAPALFKAMERVTAAAFG 176

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           +RRK LR +LK L G+ LL  A I+   RAE L I +F R+   
Sbjct: 177 QRRKMLRGALKGLNGDKLLAAAEIDGTRRAETLDIAEFDRLARA 220


>gi|225872206|ref|YP_002753661.1| dimethyladenosine transferase [Acidobacterium capsulatum ATCC
           51196]
 gi|259494240|sp|C1F127|RSMA_ACIC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225792765|gb|ACO32855.1| dimethyladenosine transferase [Acidobacterium capsulatum ATCC
           51196]
          Length = 283

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 16/281 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           KS  +  I   +K  PK  +GQNFL+     + I E+ G+L   TV+EIG G G +T+ L
Sbjct: 11  KSREVAAISGKHK--PK--LGQNFLVSEAACRSIVEALGNLGARTVVEIGPGKGAITE-L 65

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   A ++I IE D++  P L++  ++    + +I+DD L+VD          + ++ NL
Sbjct: 66  LANRAERLIAIELDRELAPRLRERFARR-ETVTVIEDDVLRVDLSALARPGEKLLVVGNL 124

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY + + +L + I  +      E   ++ Q+EV +R+ A   S  YG LSV      +  
Sbjct: 125 PYYMTSEILLHLIRHEAA---IERAVVMVQREVADRVAAGPGSRDYGLLSVTAQLHARVE 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            +  + P  F P P+V STV+ +  H     +           +  F ++RKTL  +L+ 
Sbjct: 182 KLLTLPPGAFSPPPEVYSTVLRWTMHSRTDELGVDPTRFTGFLRSCFAQKRKTLGNNLRA 241

Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              E       +  AG+   +RAE LS+E    +   L D 
Sbjct: 242 AKYEPAAIAGAMQSAGVAAGVRAEELSLEALAALWRTLEDR 282


>gi|260815743|ref|XP_002602632.1| hypothetical protein BRAFLDRAFT_225323 [Branchiostoma floridae]
 gi|229287943|gb|EEN58644.1| hypothetical protein BRAFLDRAFT_225323 [Branchiostoma floridae]
          Length = 306

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 12/249 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K+      +    I   K  GQ+ L +  ++  + E +      TV+EIG G GNLT  +
Sbjct: 8   KTSRTHQEVQKQGIGFNKQFGQHILKNPLVVDSMVEKAALRPTDTVLEIGPGTGNLTMKM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           +    +KVI  E D +    L+      P  ++L+++  DALK D   FF+I      +A
Sbjct: 68  IDR-VKKVIACEIDPRLVAELQKRVQGTPSAHKLQMMVGDALKTDLP-FFDIC-----VA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      PF+    L+FQ+E  +R+ A      Y RLS+      +
Sbjct: 121 NIPYQISSPLVFKLL---LHRPFFRCAILMFQREFAQRLVAPPGDKLYCRLSLNVQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
              +  I  + F P PKV S+V+   P   P P   +    + + AF ++ KTL  + K 
Sbjct: 178 VDHLMKIGRNNFRPPPKVESSVVRLEPKNPPPPINFQEWDGMVRIAFLRKNKTLGAAFKN 237

Query: 244 LGGENLLHQ 252
               +LL +
Sbjct: 238 SKVLSLLEK 246


>gi|72160809|ref|YP_288466.1| dimethyladenosine transferase [Thermobifida fusca YX]
 gi|119365858|sp|Q47SX4|RSMA_THEFY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71914541|gb|AAZ54443.1| dimethyladenosine transferase [Thermobifida fusca YX]
          Length = 287

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 124/291 (42%), Gaps = 24/291 (8%)

Query: 1   MTMNNKS-------HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53
           MT ++ +         ++ + +   I P K +GQNF++D   +++I  ++       V+E
Sbjct: 1   MTESDSADARLLTPADVRRLAAQLGIRPTKTLGQNFVIDPGTVRRIVRAAQVSPDDVVVE 60

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDF 109
           +G G G+LT  LL    R V  +E D +    L     D +  + +RL ++  DAL++  
Sbjct: 61  VGPGLGSLTLALLPH-VRHVTAVEIDPRLAEALPGTVADHAPAYAHRLRVVTADALRITE 119

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
                   P  ++ANLPYN+   ++          P  E   ++ Q EV ER+ A+    
Sbjct: 120 ---LPDPQPTALVANLPYNVAVPVVL---HLLNLLPSLEHGLVMVQAEVAERLAARPGDR 173

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQE 228
            YG  S    W         I   VF+P P V S ++        P     E +  +   
Sbjct: 174 AYGAPSAKIAWYADVRRAGAIGRTVFWPVPNVDSGLVALRRRPAPPTKASREDVFAVVDA 233

Query: 229 AFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           AF +RRKTLR      +      E  L  AG++   R E L I DF RI  
Sbjct: 234 AFAQRRKTLRAALSSWAGSAAAAEAALRSAGVDPRSRGETLGIADFARIAE 284


>gi|169154349|emb|CAQ15218.1| novel protein similar to H.sapiens DIMT1L, DIM1 dimethyladenosine
           transferase 1-like (S. cerevisiae) (DIMT1L, zgc:101122)
           [Danio rerio]
          Length = 306

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 114/249 (45%), Gaps = 12/249 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K       +    I+    +GQ+ L +  ++  I E +       V+E+G G GN+T  L
Sbjct: 8   KKSRTHQEVKSQGIMFNTGIGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKL 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KV+  E D +    L+      P  N+L+I+  D LK +   FF++      +A
Sbjct: 68  LE-KAKKVVACELDTRLVAELQKRVQCTPMQNKLQILIGDVLKTELP-FFDVC-----VA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I +  +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +
Sbjct: 121 NLPYQISSPFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
              +  +  + F P PKV S+V+   P   P P   ++   + + AF ++ K L  + K 
Sbjct: 178 VDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPVNFQAWDGLVRIAFVRKNKMLSAAFKS 237

Query: 244 LGGENLLHQ 252
              E LL +
Sbjct: 238 AAVEKLLEK 246


>gi|307172086|gb|EFN63666.1| Probable dimethyladenosine transferase [Camponotus floridanus]
          Length = 263

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 13/254 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+      + K + +   I+  K  GQ+ L +  I++ + E +       V+EIG G GN
Sbjct: 1   MSKVRAVGTHKEV-ARQGILFNKSKGQHILKNPLIIQSMVEKAALKPTDVVLEIGPGTGN 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSP 118
           +T  +L   A+KVI  E D +    L+       + ++L+I+  D LK D   FF++   
Sbjct: 60  MTVKMLE-KAKKVIACEIDPRMVAELQKRVQGTVYQSKLQIMVGDVLKSDLP-FFDLC-- 115

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
              +AN+PY I + L+F  +S     P +    L+FQ+E  ER+ A+     Y RLS+ T
Sbjct: 116 ---VANIPYQISSPLIFKLLSHR---PIFRCAVLMFQREFAERLVAKPGDKLYCRLSINT 169

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
               +  M+  +  + F P PKV S V+   P   P P   +    +T+ AF ++ KTL 
Sbjct: 170 QLLARVDMLMKVGKNNFRPPPKVESNVVRIEPRNPPPPINYQEWDGLTRIAFIRKNKTLS 229

Query: 239 QSLKRLGGENLLHQ 252
            + K+     LL +
Sbjct: 230 ATFKQTTVITLLEK 243


>gi|255576485|ref|XP_002529134.1| dimethyladenosine transferase, putative [Ricinus communis]
 gi|223531413|gb|EEF33247.1| dimethyladenosine transferase, putative [Ricinus communis]
          Length = 350

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 14/251 (5%)

Query: 6   KSHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           K    +   +HY   I   K  GQ+ L +  ++  I E SG      ++EIG G GNLT+
Sbjct: 10  KVKQSRAPSNHYQGGISFHKSKGQHILKNPLLVDTIVEKSGIKSTDVILEIGPGTGNLTK 69

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI 121
            LL  G + VI +E D +    L+      P  NRL++IQ D LK D   F         
Sbjct: 70  KLLEAG-KMVIAVELDPRMVLELQRRFQGTPMSNRLKVIQGDVLKTDLPYF------DIC 122

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +AN+PY I + L F  ++     P +    ++FQ+E   R+ AQ     Y RLSV T   
Sbjct: 123 VANIPYQISSPLTFKLLNHQ---PSFRCAIIMFQREFAMRLVAQPGDTLYCRLSVNTQLY 179

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            + + +  +  + F P PKV S+V+   P         +      +  F ++ KTL    
Sbjct: 180 ARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRPQVNAKEWDGFIRICFIRKNKTLGSIF 239

Query: 242 KRLGGENLLHQ 252
           +     +LL +
Sbjct: 240 RIKNVLSLLEK 250


>gi|290959782|ref|YP_003490964.1| SAM-binding methyltransferase [Streptomyces scabiei 87.22]
 gi|260649308|emb|CBG72423.1| putative SAM-binding methyltransferase [Streptomyces scabiei 87.22]
          Length = 316

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/279 (26%), Positives = 123/279 (44%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++      TV+E+G G G+LT  LL
Sbjct: 11  PADVRELAAALGVRPTKQRGQNFVIDANTVRRIVRTADVRPQDTVVEVGPGLGSLTLALL 70

Query: 67  TLGARKVIVIEKDQQF----FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V  +E D          +        +R  ++  DA++V          P  ++
Sbjct: 71  ET-ADRVTAVEIDDVLAAALPATIAARMPARADRFALVHSDAMQVTE---LPGPPPTALV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 127 ANLPYNVAVPVLLHMLET---FPSIERTLVMVQAEVADRLAAGPGSKVYGVPSVKANWYA 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLR-- 238
           +      I  +VF+P+P V S ++  +    P+        +  +   AF +RRKTLR  
Sbjct: 184 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRTEPVKTAATRREVFTVVDAAFAQRRKTLRAA 243

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
               +      E  L  AG+    R E+L +E+F  I  
Sbjct: 244 LAGWAGSAAAAEAALVAAGVSPQARGESLGVEEFAAIAE 282


>gi|7657198|ref|NP_055288.1| probable dimethyladenosine transferase [Homo sapiens]
 gi|114600097|ref|XP_517743.2| PREDICTED: probable dimethyladenosine transferase isoform 3 [Pan
           troglodytes]
 gi|27151492|sp|Q9UNQ2|DIMT1_HUMAN RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=DIM1 dimethyladenosine transferase 1-like;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|4050050|gb|AAC97955.1| putative dimethyladenosine transferase [Homo sapiens]
 gi|14790071|gb|AAH10874.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Homo
           sapiens]
 gi|119571770|gb|EAW51385.1| dimethyladenosine transferase, isoform CRA_b [Homo sapiens]
 gi|123981158|gb|ABM82408.1| dimethyladenosine transferase [synthetic construct]
 gi|123995987|gb|ABM85595.1| dimethyladenosine transferase [synthetic construct]
 gi|123996331|gb|ABM85767.1| dimethyladenosine transferase [synthetic construct]
 gi|307684642|dbj|BAJ20361.1| DIM1 dimethyladenosine transferase 1-like [synthetic construct]
          Length = 313

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 19/268 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256

Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278
               +   +  E+ SI D  +I  ILT 
Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282


>gi|88606758|ref|YP_505210.1| dimethyladenosine transferase [Anaplasma phagocytophilum HZ]
 gi|122064279|sp|Q2GK91|RSMA_ANAPZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|88597821|gb|ABD43291.1| dimethyladenosine transferase [Anaplasma phagocytophilum HZ]
          Length = 269

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 97/261 (37%), Positives = 140/261 (53%), Gaps = 8/261 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK +GQ F+LD  I +KI   +G L+   VIE+G G G +TQ +L    R++  IEKD
Sbjct: 7   RTKKSLGQCFILDPAIAEKIVSYAGCLEQYNVIEVGPGLGIMTQSILNKEVRRLTAIEKD 66

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           ++   I   +   H    + I +D L V+ E+  + S P+++I+NLPYNI   LL   + 
Sbjct: 67  RRLSNIHSKLKEAHAE-YDCIFEDILDVNIEQLLSQS-PLKMISNLPYNISVILLLKLL- 123

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +   +E L L+FQKEV +RI AQ N+  Y  LS+L         + D  P +F PSP
Sbjct: 124 --PYIHRFEKLILMFQKEVADRIVAQPNTKSYSILSILVQLLCDVRKVEDFPPEIFSPSP 181

Query: 200 KVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIE 256
           KV S+VI   P L+P          ++ ++ F  RRKT+R SLK      + L     I+
Sbjct: 182 KVYSSVIEITPLLSPRFSVDNSYFAQVLKKLFHCRRKTIRNSLKSCIKDADALFIGCNID 241

Query: 257 TNLRAENLSIEDFCRITNILT 277
            N RAE+L+IE  C +TN L 
Sbjct: 242 PNARAESLTIEQLCSLTNALK 262


>gi|332233664|ref|XP_003266024.1| PREDICTED: probable dimethyladenosine transferase [Nomascus
           leucogenys]
          Length = 313

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 19/268 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256

Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278
               +   +  E+ SI D  +I  ILT 
Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282


>gi|228989249|ref|ZP_04149242.1| Dimethyladenosine transferase [Bacillus pseudomycoides DSM 12442]
 gi|228770459|gb|EEM19030.1| Dimethyladenosine transferase [Bacillus pseudomycoides DSM 12442]
          Length = 254

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 20/255 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           + +        IEIG G G LT+ L    A+KV+  E DQ+  PIL +  + + N + +I
Sbjct: 2   DYAEIGPESGAIEIGPGIGALTEQLAKR-AKKVVAFEIDQRLLPILDETLAPYSN-VTVI 59

Query: 101 QDDALKVDFEKFFNI----SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
             D LK D  + F         + ++ANLPY + T +LF  +             ++ QK
Sbjct: 60  NKDILKADVHEVFGEQFEKGQDVMVVANLPYYVTTPILFKLLEEQLP---VRGFVVMMQK 116

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           EVG+R+ A+  +  YG LS+   + T+   +  +   VF P P V S VI  +    PI 
Sbjct: 117 EVGDRLAAKPGTKDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRLLKRPKPIV 176

Query: 217 C--CLESLKKITQEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLS 265
                +   ++ + +F +RRKTL  +L              + +L + GI+   R E LS
Sbjct: 177 EVKDEKFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLS 236

Query: 266 IEDFCRITNILTDNQ 280
           IE+F  ++N L  ++
Sbjct: 237 IEEFAALSNALVSHK 251


>gi|67923799|ref|ZP_00517261.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501]
 gi|67854342|gb|EAM49639.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501]
          Length = 271

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 126/271 (46%), Gaps = 13/271 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L     L++I +++   +   ++EIG G G LT+ LL L    V+ +E D
Sbjct: 3   QPRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPL-VDSVLAVELD 61

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLLF 135
                 L      + N L ++Q D LK+D               +++AN+PYNI + +L 
Sbjct: 62  WDLCKKLVKSFGNYDNFL-LLQGDILKLDITTEAQDFPKFLPINKVVANIPYNITSPILE 120

Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             +   + P  PF++ + LL QKEV +RI A   +  YG LSV   +      + D+   
Sbjct: 121 KLLGRISSPKTPFYDLIVLLIQKEVAQRIVAYPGNKTYGALSVKMQYLADCNYICDVPRK 180

Query: 194 VFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL--- 249
            F P PKV S VI F P +        + L+ +    F  RRK LR +LK L   +    
Sbjct: 181 AFSPPPKVDSAVITFRPRVLANSAVDPKRLETLINLGFSNRRKMLRNNLKSLIDSDRLGK 240

Query: 250 -LHQAGIETNLRAENLSIEDFCRITNILTDN 279
            L +  +   +RAE L I  +  ++N  +  
Sbjct: 241 FLREIDLNEQVRAEKLDINQWIALSNHFSQQ 271


>gi|126315217|ref|XP_001366147.1| PREDICTED: similar to Dimethyladenosine transferase [Monodelphis
           domestica]
          Length = 309

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 118/268 (44%), Gaps = 19/268 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E
Sbjct: 23  GVMFNTGLGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 81

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 82  LDPRLVAELHKRVQGTPQASKLQVMVGDVLKTDLPFF------DACVANLPYQISSPFVF 135

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 136 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 192

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 193 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 252

Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278
               +      E+ SI D  +I  IL D
Sbjct: 253 IHCSVHNIAIPEDFSIAD--KIQKILMD 278


>gi|171464150|ref|YP_001798263.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193688|gb|ACB44649.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 264

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 15/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I         + VIEIG G G LT  LL      + ++E 
Sbjct: 2   HRARKRFGQNFLQDNGIIYSIVALINPSADMRVIEIGPGLGALTLPLL-SNLDHLDLLEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLL 134
           D+       + + Q    L + + DALK DF  +    S      +++ NLPYNI + LL
Sbjct: 61  DRDLVAFWNEKNLQG---LAVTEGDALKFDFLAWAQNRSTKQGLCKVVGNLPYNISSPLL 117

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +SA       +    + Q EV ER+ A+  S  + RLSV+   R    ++ ++ P  
Sbjct: 118 FHLVSAAA---SIDEQVFMLQAEVVERMVAKAGSSDFSRLSVMLQARYDMELVLEVPPEA 174

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S V+  IP  +      E  +L+K+   AF +RRK LR +L+       L +
Sbjct: 175 FDPRPKVNSAVVRMIPRRDFTLSDAEWSALEKVVAAAFSQRRKMLRTNLQDFADRLGLTE 234

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
             +E   RA+++S++ +     +L 
Sbjct: 235 --VELKARAQDISVDHYIEWAKVLA 257


>gi|308807092|ref|XP_003080857.1| Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri]
 gi|116059318|emb|CAL55025.1| Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri]
          Length = 344

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           ++  I   K  GQ+ L +  I+  I + +G      V+EIG G GNLT  LL    +KV+
Sbjct: 35  AYQGIQFLKSFGQHILKNPAIVTAIIDKAGVKSTDVVLEIGPGTGNLTTKLLDAC-KKVV 93

Query: 75  VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            +E D +    L+      P   ++LEIIQ D LKVD   F         +AN+PY I +
Sbjct: 94  AVEFDPRMVLELRRRVQGDPVWNSKLEIIQGDFLKVDLPYF------DVCVANVPYQISS 147

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L+F  ++     P + S TL+FQ+E   R+ A      Y RLSV T    +   +  + 
Sbjct: 148 PLIFKLLAHR---PMFRSATLMFQREFAMRLVAPPGDSLYCRLSVNTQLLARTQHILKVG 204

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P    IP   +    + +  FG++ KTL    +      LL 
Sbjct: 205 KNNFRPPPKVDSSVVRLEPRHPQIPVNFKEWDGLVRFCFGRKNKTLGGIFRTKNVLELLT 264


>gi|78357102|ref|YP_388551.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|119365022|sp|Q30ZP0|RSMA_DESDG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78219507|gb|ABB38856.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 280

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 84/264 (31%), Positives = 124/264 (46%), Gaps = 9/264 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK +GQNFL D NI  KI  +        VIEIG GPG LT  +       + ++EKD
Sbjct: 19  RAKKSLGQNFLQDKNISAKIVAALQIGPADCVIEIGPGPGALTDFIQKAAPASLWLLEKD 78

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             +    +   S+ P   +++  DAL   +E+  +  S  ++I NLPYN+ + L+++ +S
Sbjct: 79  TYWAGEHRRSDSRTPVEKQVVLTDALTFPWERLSDDRS-WKLIGNLPYNVASPLMWDCLS 137

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  +     + QKEVG+RI A   S  YG LSV     T       + P VF P P
Sbjct: 138 LAA----FSRAVFMIQKEVGDRIVAAPRSRQYGALSVWLQSHTVPRKELIVPPTVFKPRP 193

Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQAGI 255
           KV S V+ F P   +       +L  + +  F +RRK L++ LKR   +       Q G+
Sbjct: 194 KVDSAVLSFAPLPLSARNFSPGALSVLLKICFQQRRKQLQKILKRYWSDAVCGWFEQQGL 253

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
               R E LS   F ++ N+L   
Sbjct: 254 PPAARPEELSPNQFQQLANLLESQ 277


>gi|124025654|ref|YP_001014770.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL1A]
 gi|166221688|sp|A2C1Z5|RSMA_PROM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|123960722|gb|ABM75505.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. NATL1A]
          Length = 291

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 12/275 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L+ ++ IP+K  GQ++L D  +L +I +++       V+E+G G G LT+ L+   A+ +
Sbjct: 7   LNDFRHIPRKRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQAKFI 66

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             IE D+     LK   + H N+  + + D L    +    ++   +++AN+PYNI   L
Sbjct: 67  QAIELDRDLVIGLKKRFN-HQNKFSLREGDILSAPLDAENGVTIN-KVVANIPYNITGPL 124

Query: 134 LFNWISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           L   I      P   +E+L LL QKEV +R+ A+  + ++  LSV      K   + D+ 
Sbjct: 125 LKRLIGELRKAPENSFETLVLLMQKEVAQRLLARPGNSNFSALSVRVQLLAKCQDVCDVP 184

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGG-- 246
              F P+PKV S V+   P  +  P   E    L+K+ + AF  RRK LR ++       
Sbjct: 185 SKCFQPAPKVDSKVVMIKPFASIDPDFYEVGNLLEKLLKHAFAGRRKKLRNTIGSFVTSN 244

Query: 247 ---ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              +      GI  + R + +S  ++  +   L +
Sbjct: 245 DQIKEFFAYRGISLDQRPQEISPSNWFGLAKALKE 279


>gi|302035917|ref|YP_003796239.1| dimethyladenosine transferase [Candidatus Nitrospira defluvii]
 gi|300603981|emb|CBK40313.1| Dimethyladenosine transferase [Candidatus Nitrospira defluvii]
          Length = 267

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 127/261 (48%), Gaps = 15/261 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQNFL+D NI++KI   +      TV+EIG G G LT  L    A +VI +E D Q 
Sbjct: 10  KRLGQNFLIDPNIIRKIVSLAALGPEDTVLEIGPGRGALTAGLCAE-AGRVIAVEIDPQL 68

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            P L+D    H   L++   DAL   FE          ++ANLPY + T +LF  + A  
Sbjct: 69  QPHLQDSL-GHCRNLDLRIGDALAFPFETL---PLRTVVVANLPYYVSTPILFALLDARA 124

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                + L L+ Q EV  R+ A+ NS  YG LSVLT    +  + F +S + F P P V 
Sbjct: 125 ---RLDRLVLMLQTEVALRLAAKPNSEDYGVLSVLTQEAAEVDLAFRVSANCFRPRPTVG 181

Query: 203 STVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGI 255
           S V+H          P   E  +++ + +F  RRKTL  SL+  G           +AG+
Sbjct: 182 SAVVHLRIKTQEGFEPVRHERFRRLVRASFAHRRKTLVNSLRDEGYPPEQIARATAEAGV 241

Query: 256 ETNLRAENLSIEDFCRITNIL 276
               RAE L+++D+  +    
Sbjct: 242 PPQARAEMLTLDDYRTLARAF 262


>gi|326389221|ref|ZP_08210789.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994584|gb|EGD53008.1| dimethyladenosine transferase [Thermoanaerobacter ethanolicus JW
           200]
          Length = 273

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 136/264 (51%), Gaps = 16/264 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            GQNF+ D NIL KI  +SG      V+EIG G G LT+ L     +KVI  E D++ + 
Sbjct: 12  WGQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEELAKR-VKKVISFEIDRELYE 70

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISAD 141
             K+  + + N + I + D +KVD  K  N      P +++ANLPY I + ++   +   
Sbjct: 71  ATKEKLNIYNNVIIINE-DIMKVDLNKIANEYFEGKPFKVVANLPYYITSPIIMMLLECK 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
               F + +T+L QKEV ERI A   +  YG L+V   ++ K   +F++ P VF P PKV
Sbjct: 130 ----FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKKLFNLPPSVFVPPPKV 185

Query: 202 TSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----G 254
            S+++        +           + + AFG+RRK L  +LK LG  + ++ +A     
Sbjct: 186 DSSLVKLEILDKSLVEVKDERLFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSN 245

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           +    R E LSIE+F  + N++ D
Sbjct: 246 LSPQRRGETLSIEEFAALANVIYD 269


>gi|21313560|ref|NP_079723.1| probable dimethyladenosine transferase [Mus musculus]
 gi|27151491|sp|Q9D0D4|DIMT1_MOUSE RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=DIM1 dimethyladenosine transferase 1-like;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|12847736|dbj|BAB27687.1| unnamed protein product [Mus musculus]
 gi|18043925|gb|AAH19799.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Mus
           musculus]
 gi|74148362|dbj|BAE36330.1| unnamed protein product [Mus musculus]
 gi|148686528|gb|EDL18475.1| RIKEN cDNA 1500031M22, isoform CRA_b [Mus musculus]
          Length = 313

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 120/268 (44%), Gaps = 19/268 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFF------DACVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256

Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278
               ++  +  E+ SI D  +I  ILT 
Sbjct: 257 IHCSVQNTVIPEDFSIAD--KIQQILTS 282


>gi|145349952|ref|XP_001419390.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579621|gb|ABO97683.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 320

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           ++  I   K  GQ+ L +  I+  I + +G      V+EIG G GNLT  LL    +KVI
Sbjct: 35  AYQGIQFLKSFGQHILKNPAIVNAIVDKAGVKSTDVVLEIGPGTGNLTTKLLDAC-KKVI 93

Query: 75  VIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            +E D +    L+      P   +RLEIIQ D LKVD   F         +AN+PY I +
Sbjct: 94  AVEFDPRMVLELRRRVQSDPAQNSRLEIIQGDFLKVDLPYF------DVCVANVPYQISS 147

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L+F  ++     P + S TL+FQ+E   R+ A      Y RLSV T    +   +  + 
Sbjct: 148 PLIFKLLAHR---PMFRSATLMFQREFAMRLVAPPGDALYCRLSVNTQLLARTQHILKVG 204

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P    IP   +    + +  FG++ KTL    +      LL 
Sbjct: 205 KNNFRPPPKVDSSVVRIEPRHPQIPVNFKEWDGLVRFCFGRKNKTLGGIFRTKNVLELLT 264


>gi|148239702|ref|YP_001225089.1| dimethyladenosine transferase [Synechococcus sp. WH 7803]
 gi|166221710|sp|A5GLH7|RSMA_SYNPW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|147848241|emb|CAK23792.1| Dimethyladenosine transferase [Synechococcus sp. WH 7803]
          Length = 280

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 84/275 (30%), Positives = 126/275 (45%), Gaps = 11/275 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              P+K  GQ++L D  +L +I ++S   D   V+E+G G G LT+ LL   A  V  +E
Sbjct: 5   GHTPRKRFGQHWLRDERVLDRILDASDLGDDDRVLEVGPGRGALTERLLASSAAAVHAVE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+D     P R  + + D L V      +     +++AN+PYNI   LL   
Sbjct: 65  LDRDLVAGLQDRFGDSP-RFSLREGDVLAVPL-TLPDGQRATKVVANIPYNITGPLLERL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           I     P  P ++ L LL QKEV ERI A+  +  +  LSV      K + +  + P  F
Sbjct: 123 IGRLDQPVDPPYQRLVLLVQKEVAERIRARPGASSFSALSVRMQLLAKCSSVCPVPPRCF 182

Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251
            P PKV S VI   P      P P     ++++ ++AF  RRK LR +L      + L  
Sbjct: 183 QPPPKVHSEVIRLDPLPLEQRPDPVICRRVERLLKQAFLARRKMLRNTLTVSQPLSELET 242

Query: 252 ---QAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
              QAGI+   R + ++   +  +   L      A
Sbjct: 243 ITQQAGIDLRQRPQEVAPHAWVELARGLNQADSAA 277


>gi|21673632|ref|NP_661697.1| dimethyladenosine transferase [Chlorobium tepidum TLS]
 gi|27151567|sp|Q8KE87|RSMA_CHLTE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|21646748|gb|AAM72039.1| dimethyladenosine transferase [Chlorobium tepidum TLS]
          Length = 275

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 87/266 (32%), Positives = 126/266 (47%), Gaps = 17/266 (6%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H  I  KK +GQNFLLD NI +KI   SG  +G  V+EIG G G LT  +L +      
Sbjct: 7   KHTHIAAKKKLGQNFLLDRNIPRKIVRESGIKEGDRVVEIGPGFGALTTAILEVMP-SFT 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            IEKD++     ++   +HP ++E+I+DD LKV  E        + ++ N+PY+I + +L
Sbjct: 66  AIEKDRELAKFNRE---EHP-QIELIEDDFLKVPLEPLA-AGGKLSVLGNIPYSITSPIL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +          S TL+ Q EV +RI A   +  YG L+V          +F +   V
Sbjct: 121 FRLLDNR---HLIASATLMIQHEVAQRIAAVPGTKEYGILAVQMQAFCDVKYLFKVGRAV 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P V S VI  +P         E  +   +  F +RRKTL  +LK          +G
Sbjct: 178 FKPRPDVDSAVIKMVPKAVDPVKDSEGFRTFVRRVFHQRRKTLLNNLKEYY-----DTSG 232

Query: 255 IET---NLRAENLSIEDFCRITNILT 277
           +      LRAE+LS+     +   L 
Sbjct: 233 VPEPTLKLRAESLSVPALITLFTQLK 258


>gi|297675337|ref|XP_002815639.1| PREDICTED: probable dimethyladenosine transferase-like isoform 1
           [Pongo abelii]
          Length = 313

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 114/258 (44%), Gaps = 17/258 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256

Query: 253 --AGIETNLRAENLSIED 268
               +   +  E+ SI D
Sbjct: 257 IHCSVHNIIIPEDFSIAD 274


>gi|149059278|gb|EDM10285.1| similar to RIKEN cDNA 1500031M22 (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 313

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 124/281 (44%), Gaps = 19/281 (6%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           ++      +     ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  
Sbjct: 14  DRQEQRGELKRAGGLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVK 73

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122
           LL   A+KV+  E D +    L       P  ++L+++  D LK D   F         +
Sbjct: 74  LLE-KAKKVVACELDPRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFF------DACV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I +  +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    
Sbjct: 127 ANLPYQISSPFVFKLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLA 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +   +  +  + F P PKV S+V+   P   P P   +    + +  F ++ KTL  + K
Sbjct: 184 RVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243

Query: 243 RLGGENLLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278
               + LL +       ++  +  E+ SI D  +I  ILT+
Sbjct: 244 SSAVQQLLEKNYRIHCSVQNTVIPEDFSIAD--KIQQILTN 282


>gi|324517882|gb|ADY46945.1| Dimethyladenosine transferase 1 [Ascaris suum]
          Length = 362

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 147/300 (49%), Gaps = 25/300 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +L+  +  YK+  K+ + QNFL+D+N+ +KI  ++G  +G  V+EIG GPG +T+ +
Sbjct: 10  PLPALRDFIHMYKLNAKRILSQNFLMDMNLTRKIVRAAGIEEGDRVVEIGPGPGGITRAI 69

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----------N 114
           L  G  ++ VIE D++F P L+ ++    +RL I   DALK D    +           +
Sbjct: 70  LEAGCERLDVIEIDKRFIPPLQHLAEASGSRLHIHHADALKTDIGAIWQANATEGTSWDD 129

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSP 169
               + ++ NLP++I + L+  ++         W      LTL FQ EV  RI    +S 
Sbjct: 130 APPRLHVVGNLPFHIASPLIIKYLREMHTRKSAWSYGRVPLTLTFQMEVARRICGPIDSE 189

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQE 228
              R+S+++ + ++  ++F+I    F P PK+   V+ FIP + P I    E ++KI + 
Sbjct: 190 VRARISIMSTFVSEPKILFEIPGSCFVPKPKINVGVVRFIPRIEPLIKSAFEVVEKICRH 249

Query: 229 AFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            F  R+K + + ++ L  E         LL    I+ +  +  L +E F  I     +  
Sbjct: 250 IFHYRQKYVIKCVRTLYPESLAESLSHELLSVCRIDPSTISIKLGVEQFADICYAYEEQC 309


>gi|195440550|ref|XP_002068104.1| GK10486 [Drosophila willistoni]
 gi|194164189|gb|EDW79090.1| GK10486 [Drosophila willistoni]
          Length = 334

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 142/292 (48%), Gaps = 19/292 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64
              +++ ++  YK+   K + QNFL+D  +  KI +S+G       V+E+G GPG +T+ 
Sbjct: 17  PLPTIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGTIDRRDIVLEVGPGPGGITRS 76

Query: 65  LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIR 120
           +L    +++I++EKD +F     +LK+ +     +++I  +D L+ + ++   + +  + 
Sbjct: 77  ILRRQPQRLILVEKDPRFRETLDLLKECARPLDIQVDIYHEDILRFNMDQHISDTTQRLH 136

Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +I NLP+ I TRLL NW +        +      +TL FQKEV ERI A   S    RLS
Sbjct: 137 LIGNLPFAISTRLLINWYADLSNRRGAFRRQDTCMTLTFQKEVAERICAPLGSEQRCRLS 196

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234
           +++   T   + F I    F P P+V   V+  IP   P      + ++++ +  F  R+
Sbjct: 197 IMSQIWTDPKLKFIIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFDLVERVMRHIFSMRQ 256

Query: 235 KTLRQSLKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           K  R+    L            L  +A +   +R   LS+++  R+  +  +
Sbjct: 257 KYCRRGFSNLLPPELREEQTPELFRRADVVDTMRPFELSVDECVRLAEVYAE 308


>gi|166158346|ref|NP_001099878.2| probable dimethyladenosine transferase [Rattus norvegicus]
 gi|165971279|gb|AAI58730.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Rattus
           norvegicus]
          Length = 313

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 124/281 (44%), Gaps = 19/281 (6%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           ++      +     ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  
Sbjct: 14  DRQEQRGELKRAGGLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVK 73

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122
           LL   A+KV+  E D +    L       P  ++L+++  D LK D   F         +
Sbjct: 74  LLE-KAKKVVACELDPRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFF------DACV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I +  +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    
Sbjct: 127 ANLPYQISSPFVFKLL---LHRPFFRCAILMFQREFALRLAAKPGDKLYCRLSINTQLLA 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +   +  +  + F P PKV S+V+   P   P P   +    + +  F ++ KTL  + K
Sbjct: 184 RVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243

Query: 243 RLGGENLLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278
               + LL +       ++  +  E+ SI D  +I  ILT+
Sbjct: 244 SSAVQQLLEKNYRIHCSVQNTVIPEDFSIAD--KIQQILTN 282


>gi|317052466|ref|YP_004113582.1| dimethyladenosine transferase [Desulfurispirillum indicum S5]
 gi|316947550|gb|ADU67026.1| dimethyladenosine transferase [Desulfurispirillum indicum S5]
          Length = 270

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 138/276 (50%), Gaps = 15/276 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ IL+ + ++ KK +GQNF+ D + +++I + SG     TV+EIG G G +T++L    
Sbjct: 3   VRQILNTHGLMAKKSLGQNFICDESFVQRIVKQSGVGPDDTVLEIGPGLGVMTRVLGERS 62

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           AR VI +E D Q    L+  S+  P  + ++  DAL+ D+          R+IANLPYNI
Sbjct: 63  AR-VIALEIDGQLLDYLRS-SAHLPENVTLVHTDALRYDWGTLPAEC---RVIANLPYNI 117

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM-MF 188
            +++L   +         +S +++ Q+E+  R   +  +  +G L++         + + 
Sbjct: 118 SSQILMAIVEHHQ---LVQSFSVMLQREMALRAMGESGTKDFGPLAIYLRLYYDLELSIS 174

Query: 189 DISPHVFFPSPKVTSTVI--HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            I P VF+P+P V S+V+    +P            +K+ + +F  RRKTL+ + +    
Sbjct: 175 RIPPSVFYPAPGVESSVLQGRRLPQPRFPVGDFVRFQKLVRLSFSHRRKTLKNNYRGTTW 234

Query: 247 ENLLH----QAGIETNLRAENLSIEDFCRITNILTD 278
                      GI   LRAE LS+E F  +  +L D
Sbjct: 235 FETFMDQAPALGISPELRAEALSLEQFYLLYRLLED 270


>gi|158258883|dbj|BAF85412.1| unnamed protein product [Homo sapiens]
          Length = 313

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 19/268 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A++V+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKEVVACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256

Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278
               +   +  E+ SI D  +I  ILT 
Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282


>gi|27151490|sp|Q95KJ0|DIMT1_MACFA RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=DIM1 dimethyladenosine transferase 1-like;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|13874484|dbj|BAB46866.1| hypothetical protein [Macaca fascicularis]
          Length = 313

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 19/268 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L+      P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELRKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E+  R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAILMFQRELALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256

Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278
               +   +  E+ SI D  +I  ILT 
Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282


>gi|307265678|ref|ZP_07547231.1| dimethyladenosine transferase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919322|gb|EFN49543.1| dimethyladenosine transferase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 273

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 137/264 (51%), Gaps = 16/264 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            GQNF+ D NIL KI  +SG      V+EIG G G LT+ L  +  +KVI  E D++ + 
Sbjct: 12  WGQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEELAKM-VKKVISFEIDRELYE 70

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISAD 141
             K+  + + N + I + D +KVD  K  N      P +++ANLPY I + ++   +   
Sbjct: 71  ATKEKLNIYNNVIIINE-DIMKVDLNKIANEYFEGKPFKVVANLPYYITSPIIMMLLECK 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
               F + +T+L QKEV ERI A   +  YG L+V   ++ K   +F++ P VF P PKV
Sbjct: 130 ----FVKEITVLVQKEVAERICALPGTKDYGILTVFINFKAKPKKLFNLPPSVFVPPPKV 185

Query: 202 TSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----G 254
            S+++        +           + + AFG+RRK L  +LK LG  + ++ +A     
Sbjct: 186 DSSLVKLEILDKSLVEVKDERLFSNVVKAAFGQRRKVLSNALKTLGLPKEIIDKAFTLSN 245

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           +    R E LSIE+F  + N++ D
Sbjct: 246 LSPQRRGETLSIEEFAALANVIYD 269


>gi|159462946|ref|XP_001689703.1| dimethyladenosine transferase [Chlamydomonas reinhardtii]
 gi|158283691|gb|EDP09441.1| dimethyladenosine transferase [Chlamydomonas reinhardtii]
          Length = 352

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 12/236 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +   K  GQ+ L +  +++ I + +G      V+EIG G GNLT  LL   A+KVI +E
Sbjct: 38  GLEFHKSKGQHILRNPLVVQAIVDKAGVKSTDVVLEIGPGTGNLTVKLLE-KAKKVIAVE 96

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L+      P  N L+II  D ++V+   F         +AN+PYNI + L F
Sbjct: 97  LDPRMVLELQRRVQGTPYANNLQIIHGDFMRVELPYF------DLCVANIPYNISSPLTF 150

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             ++     P + +  +++Q E   R+ A+     Y RL+V T    + + +  +  + F
Sbjct: 151 KLLAHR---PAFRAAVIMYQHEFAMRLVAKAGDNLYSRLAVNTQLLARVSHLLKVGKNNF 207

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            P PKV S+V+   P   P P        + +  F ++ KTL    K+      L 
Sbjct: 208 RPPPKVDSSVVRIEPRHPPPPVNFLEWDGLVRLCFSRKNKTLGAIFKQTNTLQALE 263


>gi|257057212|ref|YP_003135044.1| dimethyladenosine transferase [Saccharomonospora viridis DSM 43017]
 gi|256587084|gb|ACU98217.1| dimethyladenosine transferase [Saccharomonospora viridis DSM 43017]
          Length = 284

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 16/278 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ + +   + P K +GQNF+ D N +++I   +G   G  V+E+G G G+LT  LL
Sbjct: 10  AAEIRRLAAALGLRPTKKLGQNFVHDANTVRRIVGLAGVEPGEAVVEVGPGLGSLTLGLL 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L D  ++H      RL +I+ DAL++  ++      P  ++
Sbjct: 70  HAGAH-VAAVEIDPVLAARLPDTVAEHAPDTVERLTVIERDALRLRADEL--PIEPTALV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + ++     P      ++ Q EV +R++A+  S  YG  SV   W  
Sbjct: 127 ANLPYNVAVPVVLHLLAE---LPSLRRALVMVQTEVADRMSARPGSRVYGVPSVKLAWYG 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +A  +  +   VF+P P V S+++ F     P     +++  +   AF +RRKTLR +L 
Sbjct: 184 RARKVASVPRSVFWPVPNVDSSLVAFE-RATPPDADRDTVFALVDAAFAQRRKTLRAALA 242

Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
              G       LL +AG++   R E L++E F  I   
Sbjct: 243 PWAGSADRAAELLSRAGVDPATRGERLTVEQFAAIARA 280


>gi|114600099|ref|XP_001136488.1| PREDICTED: dimethyladenosine transferase isoform 2 [Pan
           troglodytes]
          Length = 300

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 19/268 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256

Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278
               +   +  E+ SI D  +I  ILT 
Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282


>gi|332665266|ref|YP_004448054.1| ribosomal RNA small subunit methyltransferase A [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334080|gb|AEE51181.1| Ribosomal RNA small subunit methyltransferase A [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 260

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 131/263 (49%), Gaps = 10/263 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDG--ITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           +  KK  GQ+FL    I ++IA S  +       V+E+G G G LT+ LL   A  + V+
Sbjct: 1   MKAKKSFGQHFLNREEIAERIANSLTTNTELAPLVLEVGPGKGMLTKYLLAKTA-SLKVV 59

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D      L+    Q  +   II  D LKVD    FN      +I N PYNI ++++F+
Sbjct: 60  EADVDMVNYLQKYYPQLQDN--IISGDFLKVDLAAVFN-GQAFGLIGNFPYNISSQIVFH 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I    + P+   +  +FQKE+ +RI A+     YG +SVLT    +   +F++    F 
Sbjct: 117 MIK---FRPYVPEMVGMFQKEMADRIIAKPGGKDYGVISVLTQAYYEGKTLFNVDKSCFS 173

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKV S VI  +   N    C E+L + + + +F +RRK LR +LK L  E++     +
Sbjct: 174 PPPKVQSAVIRLLRKENQDLGCDEALFRQVVKTSFNQRRKMLRNTLKPLFAESVEILEDV 233

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
               R E L++ DF  IT  L +
Sbjct: 234 FYQQRPEQLALNDFIEITRKLQN 256


>gi|114051271|ref|NP_001039501.1| probable dimethyladenosine transferase [Bos taurus]
 gi|114149276|sp|Q2KHT8|DIMT1_BOVIN RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=DIM1 dimethyladenosine transferase 1-like;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|86438246|gb|AAI12887.1| DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) [Bos
           taurus]
 gi|296475843|gb|DAA17958.1| probable dimethyladenosine transferase [Bos taurus]
          Length = 313

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 19/268 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KVI  E
Sbjct: 27  GLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVIACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPLASKLQVMVGDVLKADLPFF------DACVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256

Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278
               +   +  E+ SI D  +I  ILT 
Sbjct: 257 IHCSVHNIIIPEDFSIAD--KIQQILTS 282


>gi|326934876|ref|XP_003213509.1| PREDICTED: probable dimethyladenosine transferase-like [Meleagris
           gallopavo]
          Length = 385

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 79/277 (28%), Positives = 117/277 (42%), Gaps = 40/277 (14%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I E +       V+E+G G GNLT  +L    +KVI  E D +    
Sbjct: 107 GQHILKNPLVVNSIIEKAALRRTDIVLEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 165

Query: 86  LKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+         N+LEI   D LK D   F         +ANLPY I +  +F  +     
Sbjct: 166 LQKRVQGTCLANKLEIKVGDVLKTDLPFF------DACVANLPYQISSPFVFKLL---LH 216

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            PF+    L+FQ+E   R+ A+  S  Y RLS+ T    +   +  +  + F P PKV S
Sbjct: 217 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVES 276

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----------LHQA 253
           +V+   P   P P   +    + + AF ++ KTL  + K    E L          LH A
Sbjct: 277 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDHNYRIHCSLHNA 336

Query: 254 GIETN------------------LRAENLSIEDFCRI 272
            I  N                   RA ++ I+DF R+
Sbjct: 337 EIPENFKISEKIQTVLKDTGYSEKRARSMDIDDFIRL 373


>gi|184201384|ref|YP_001855591.1| dimethyladenosine transferase [Kocuria rhizophila DC2201]
 gi|183581614|dbj|BAG30085.1| dimethyladenosine transferase [Kocuria rhizophila DC2201]
          Length = 396

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 16/279 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     I P K +GQNF++D N +++I  ++       V+E+G        + L
Sbjct: 13  PAEIRELAETAGIRPTKTLGQNFVIDPNTIRRIVAAAHLAPEEHVLEVGP-GLGSLTLGL 71

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +  V  +E D      L +  ++       RL +++ DA +V   +    + P  ++
Sbjct: 72  LAASSAVTAVEIDPPLARQLPETVARFFPDAAPRLSVVEADAARV--RELPGGAEPTALV 129

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P      ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 130 ANLPYNVAVPVLLHILET---FPSIRHGLVMVQDEVADRLAAGPGSRVYGVPSVKASWYA 186

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSL 241
           +      I  +VF+P+PK+ S ++       P    L      +   AF +RRKTLR +L
Sbjct: 187 EVRKAGVIGKNVFWPAPKIASGLVRLERREPPAEERLRVPTFAVVDAAFAQRRKTLRAAL 246

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E +L  AG++   R E L + DF RI   
Sbjct: 247 SGWAGSGARAEEILRAAGVDPAERGEKLGVADFARIAEA 285


>gi|295100315|emb|CBK97860.1| dimethyladenosine transferase [Faecalibacterium prausnitzii L2-6]
          Length = 283

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 16/288 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++T+   Y     K  GQNF+++  +  KI ++SG      V+EIG G G 
Sbjct: 1   MPELTDLSVIRTLCEKYNFALSKGFGQNFIINPGLPPKIVDASGVDKSWGVLEIGPGIGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN---ISS 117
           LT+ L    A KV+ IE D++  P+L +  +   N  +++  D LK D            
Sbjct: 61  LTKELARRAA-KVVSIEVDERLPPLLAETMAGVEN-FKLVLQDVLKADLRALIEEEFPGM 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P+ + ANLPY I + ++   +          +LT++ QKE  +R+ A   +     +S  
Sbjct: 119 PVAVCANLPYYITSPIVMKLLGDRLP---IRNLTVMVQKEAADRLAAAPGTRASSAISCA 175

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
             +   + +MF  +P  F+P+PKVTS V+       P       +    + + AFG+RRK
Sbjct: 176 VSYYATSKLMFTAAPGSFYPAPKVTSAVVRMDIRTTPAVQVEDEDGYFALIRAAFGQRRK 235

Query: 236 TLRQS------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           T   +      L +      +  AG +  +R E L++EDF  +   L 
Sbjct: 236 TAANAIASGLGLPKDKVIAAIEAAGFDARIRPEALTLEDFAAVQRELK 283


>gi|312130023|ref|YP_003997363.1| dimethyladenosine transferase [Leadbetterella byssophila DSM 17132]
 gi|311906569|gb|ADQ17010.1| dimethyladenosine transferase [Leadbetterella byssophila DSM 17132]
          Length = 255

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 122/264 (46%), Gaps = 12/264 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK++GQ+FL DL+  K+I E         V+EIG G G LTQ L       + ++E
Sbjct: 3   KVKAKKHLGQHFLKDLSAAKRITEL--YQGPKKVLEIGPGMGVLTQYLRERTDLDLYLVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D++    L+        +L     D L+++  +  N      II N PYNI +++ F  
Sbjct: 61  IDKESVAYLQHQYGYTDEKL--FDADFLQMNLSERLNTEGDFGIIGNFPYNISSQIFFKV 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +         + +  + QKEVG R+ ++  +  YG LSVL          F + P  F P
Sbjct: 119 LDYRDQ---VKEVVGMVQKEVGVRLASKPGNKDYGILSVLLQAFYDIEYSFTVPPGAFDP 175

Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
            PKV S VI  + +    + C  +  K + + AF +RRK L  +LK +  +     A   
Sbjct: 176 PPKVDSGVIRLVRNMDKKLDCDYKKFKLVVKTAFNQRRKMLSNALKPVSAQQEFPYA--- 232

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
            N RAE L    F  IT +L  NQ
Sbjct: 233 -NKRAEQLDYLQFAEITRVLFPNQ 255


>gi|118792585|ref|XP_320403.3| AGAP012129-PA [Anopheles gambiae str. PEST]
 gi|116116968|gb|EAA00207.3| AGAP012129-PA [Anopheles gambiae str. PEST]
          Length = 424

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 144/298 (48%), Gaps = 28/298 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ ++  Y++   K + QNFL+D  +  KI  ++G++    V+E+G GPG +T+ +
Sbjct: 104 PLPTIRDLVKLYQLRAIKQLSQNFLMDERLTDKIVRAAGNIRDHYVLEVGPGPGGITRSI 163

Query: 66  LTLGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----- 117
           +    R ++V+EKD++F P   +L +++     R++I+Q D L     + F         
Sbjct: 164 IRQNPRHLVVVEKDRRFMPTMEMLAEVAQPF-MRMDIVQGDILDYRVAEAFPDCPPHDWM 222

Query: 118 -----PIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKN 167
                P+ +I NLP+ I TRLL NW     +    W     SLTL FQKEV ERI A   
Sbjct: 223 DRKRAPVHLIGNLPFAISTRLLINWLRDMSLRTGAWSYGRASLTLTFQKEVAERIVAPIL 282

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKIT 226
           S    RLSV+    +   + F IS   F P P+V   V+  +P   P+     ++++K+ 
Sbjct: 283 SDQRCRLSVMNQIWSTPELRFMISGRAFVPKPEVDVGVVTIVPLQTPLTQVHFDTVEKVV 342

Query: 227 QEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +  F  R+K  R+ +  L          E    +A ++   R+  LS+ +  RI    
Sbjct: 343 RHIFSMRQKYCRRGVANLYPPAVREELTEQTFKRADVDPLARSFQLSVAECLRIVEAY 400


>gi|255636797|gb|ACU18732.1| unknown [Glycine max]
          Length = 308

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 115/253 (45%), Gaps = 14/253 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I   K  GQ+ L +  ++  I E +G      ++EIG G GNLT+ LL  G +KVI IE
Sbjct: 25  GISFHKSKGQHILKNPLLVDSIVEKAGVKSTDVILEIGPGTGNLTKKLLEAG-KKVIAIE 83

Query: 78  KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L+       H NRL +IQ D LK +   F         +AN+PY I + L F
Sbjct: 84  IDPRMVLELQRRFQGTPHSNRLTVIQGDVLKTELPYF------DICVANIPYQISSPLTF 137

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +  +   P + +  ++FQ+E   R+ AQ     Y RL+V T    +   +  +  + F
Sbjct: 138 KLLKHE---PAFRAAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARVFHLLKVGRNNF 194

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P PKV S+V+   P    I    +      +  F ++ KTL    ++    +LL +   
Sbjct: 195 RPPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRICFNRKNKTLGSIFRQKSVISLLEKN-- 252

Query: 256 ETNLRAENLSIED 268
              +RA  L  ED
Sbjct: 253 YRTVRALELGQED 265


>gi|170058055|ref|XP_001864755.1| dimethyladenosine transferase [Culex quinquefasciatus]
 gi|167877296|gb|EDS40679.1| dimethyladenosine transferase [Culex quinquefasciatus]
          Length = 306

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 113/249 (45%), Gaps = 12/249 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   + T ++   I+  K  GQ+ L +  I+  + E +       V+EIG G GN+T  +
Sbjct: 8   KKTRVHTEVAKQGIVFNKDFGQHILKNPLIVTSMLEKAALRPTDVVLEIGPGTGNMTVKI 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L    +KVI  E D +    L+      P  ++L+I+  D LK D   F         +A
Sbjct: 68  LE-KVKKVIACEIDPRLVAELQKRVQGTPMQSKLQILIGDVLKADLPFF------DCCVA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I +  +F  +      PF+    L+FQ E  +R+ A+     Y RLSV T    +
Sbjct: 121 NMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEFAQRLVAKPGDKLYCRLSVNTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  I  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K+
Sbjct: 178 VDMLMKIGKNNFRPPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLSAAFKQ 237

Query: 244 LGGENLLHQ 252
                 L Q
Sbjct: 238 TTVLTALEQ 246


>gi|258406021|ref|YP_003198763.1| dimethyladenosine transferase [Desulfohalobium retbaense DSM 5692]
 gi|257798248|gb|ACV69185.1| dimethyladenosine transferase [Desulfohalobium retbaense DSM 5692]
          Length = 272

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 82/261 (31%), Positives = 125/261 (47%), Gaps = 15/261 (5%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             K+ +GQNFL+D N ++ I  +  +  G  V EIG G G LT+ +L  G  +V V+EKD
Sbjct: 19  RAKRSLGQNFLVDPNTIRAIIGALRASPGDRVFEIGPGRGALTEEMLGQG-LEVSVLEKD 77

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +     L D   Q    L +I  DA++  +E    I    R+I NLPYN+ + ++++ ++
Sbjct: 78  RVLARYLADRHPQ----LRVIVGDAMQFAWE---GIRGDWRVIGNLPYNVASPIIWDLVA 130

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P    +    QKEV +R+ A   S  YG LSV             +  +VF P P
Sbjct: 131 RT---PAARRMVFTVQKEVAQRLCAAPGSRAYGALSVWVQTFAGVHYERTLGGNVFRPRP 187

Query: 200 KVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255
           KV S V+   P   +      E+L ++ +  F KRRK L   LK +     E  L   G+
Sbjct: 188 KVDSAVVSLDPAGRSLSQAQQEALGQVLRVCFQKRRKQLGSILKSVWSPELEAWLEAQGL 247

Query: 256 ETNLRAENLSIEDFCRITNIL 276
           +  +R E LS E F  +  ++
Sbjct: 248 DRRVRPEALSPEAFLELARLV 268


>gi|115935835|ref|XP_001176419.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 306

 Score =  234 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 40/297 (13%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   +    I+    +GQ+ L +  +++ I   +      TV+E+G G GN+T  +
Sbjct: 8   KKSRVHDQVYKQGILFNTGIGQHILKNPLVIESIISKAALRSTDTVLEVGPGTGNMTVKM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KV+  E D +    L+      P   +L++I  D LK D   FF++      +A
Sbjct: 68  LD-KAKKVVACELDPRLVAELQKRVQGTPFAPKLQVIVGDVLKTDLP-FFDVC-----VA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I +  +F  +      PF+    L+FQ+E  +R+ A+     Y RLS+ T    +
Sbjct: 121 NLPYQISSPFVFKLL---LHRPFFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
              +  +  + F P PKV S+V+   P   P P   +    + + AF ++ KTL  + + 
Sbjct: 178 VDHLMKVGKNNFKPPPKVESSVVRIEPRNPPPPINFQEWDGLVRIAFVRKNKTLSAAFRN 237

Query: 244 LGGENLLHQA--------------GIE--------------TNLRAENLSIEDFCRI 272
            G   +L +                ++                 RA  + I+DF ++
Sbjct: 238 KGVVEMLEKNYRVHCSVKNIAIPDNLDMKEKVVSVLEKIEFEGKRARTMDIDDFLKL 294


>gi|22298201|ref|NP_681448.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1]
 gi|27151563|sp|P59157|RSMA_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|22294380|dbj|BAC08210.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1]
          Length = 265

 Score =  234 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 89/269 (33%), Positives = 134/269 (49%), Gaps = 14/269 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  +K  GQ++L    IL +I  ++    G  V+EIG G G LT+ LL  GA +V+ +E 
Sbjct: 2   IRARKRFGQHWLRSEAILAQIIAAAELHPGDRVLEIGPGRGALTRPLLVSGA-EVVAVEL 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L+        R ++I+ D L++D           +++AN+PYNI   LL + +
Sbjct: 61  DRDLCGQLRRQFD--SERFQLIEGDILRLDLAPL----GCNKVVANIPYNITGPLLGHLL 114

Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +   P  P +E L LL QKE+G+R+ A   S  YG LSV   +      +  + P  F 
Sbjct: 115 GSIARPRRPAFERLILLVQKEIGDRLMASPGSKAYGALSVRVQFLATCEKVCAVPPRAFQ 174

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLH 251
           P PKV S V+   PH   P     + L+ + ++ F  RRK L  +LK L         L 
Sbjct: 175 PPPKVDSVVVCLRPHRTLPRVGSPQWLETLLKQGFATRRKMLANALKSLVEPEQVRQALL 234

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280
           Q G + N RAE LS+ED+  ++ +L   Q
Sbjct: 235 QLGRDANSRAEALSLEDWLALSEVLRQLQ 263


>gi|156542231|ref|XP_001600750.1| PREDICTED: similar to ENSANGP00000016944 [Nasonia vitripennis]
          Length = 306

 Score =  234 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 40/291 (13%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
              I+  K  GQ+ L +  I++ + E +       V+E+G G GN+T  +L   ++KVI 
Sbjct: 18  RQGIVFNKDFGQHILKNPLIIQSMVEKAALRPTDVVLEVGPGTGNMTVKMLER-SKKVIA 76

Query: 76  IEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            E D +    L+      P  ++L+I+  D LK+D   FF++      +AN+PY I + L
Sbjct: 77  CEIDTRMVAELQKRVMGTPIQSKLQIMVGDVLKMDLP-FFDLC-----VANVPYQISSPL 130

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F  +      P +    L+FQ+E  ER+ A+     Y RLSV T    +  M+  +  +
Sbjct: 131 VFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKDYCRLSVNTQLLARVDMLMKVGKN 187

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P PKV S V+   P   P P   +    +T+ AF ++ KTL  + K+     ++ + 
Sbjct: 188 NFRPPPKVESNVVRIEPRNPPPPINYQEWDGLTRIAFVRKNKTLSAAFKQSSVIAMMEKN 247

Query: 254 ----------------GIETN------------LRAENLSIEDFCRITNIL 276
                            I+              LRA  + I+DF ++  + 
Sbjct: 248 YKIHCSLHNIPLPDNFDIKEKINAILTNNSINELRARTMDIDDFIKVLQVF 298


>gi|318060949|ref|ZP_07979670.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Streptomyces sp. SA3_actG]
 gi|318078811|ref|ZP_07986143.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Streptomyces sp. SA3_actF]
 gi|333026402|ref|ZP_08454466.1| putative dimethyladenosine transferase [Streptomyces sp. Tu6071]
 gi|332746254|gb|EGJ76695.1| putative dimethyladenosine transferase [Streptomyces sp. Tu6071]
          Length = 292

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 21/288 (7%)

Query: 1   MTMNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT  +       ++ + +   + P K  GQNF++D N +++I  ++   +  TV+E+G G
Sbjct: 1   MTRTDPLLGPADIRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQF----FPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
            G+LT  LL + A  V  +E D          +     +      ++  DAL+V   +  
Sbjct: 61  LGSLTLALLEVAAD-VTAVEIDDTLAAALPATVAARLPEKAAHFRLVHSDALRV---REL 116

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
              +P  ++ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG 
Sbjct: 117 PGPAPTALVANLPYNVAVPVLLHMLE---HFPSVERTLVMVQAEVADRLAAPPGSRVYGV 173

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFG 231
            SV   W         I   VF+P+P V S ++  +    P+        +  +   AF 
Sbjct: 174 PSVKAAWYAHVKRAGSIGRSVFWPAPNVDSGLVSLVRREEPLTTSASRREVFAVVDAAFA 233

Query: 232 KRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           +RRK LR      +      E  L  AG+    R E+L++E+F RI  
Sbjct: 234 QRRKGLRAALAGWAGSAAAAEEALRAAGVSPQARGESLTVEEFARIAE 281


>gi|303327382|ref|ZP_07357823.1| dimethyladenosine transferase [Desulfovibrio sp. 3_1_syn3]
 gi|302862322|gb|EFL85255.1| dimethyladenosine transferase [Desulfovibrio sp. 3_1_syn3]
          Length = 274

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 134/266 (50%), Gaps = 11/266 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK +GQ+FL    I  +IA          V+EIG GPG LT+ L       ++++EKD
Sbjct: 13  RAKKSLGQHFLRREEICDRIAALLLPQAEDRVLEIGPGPGALTRALEAAPHACLLLLEKD 72

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           + +     +   Q   R + +  DAL+ D+ +  +   P ++I NLPYN+ + L+++ +S
Sbjct: 73  RHWAA---ERQRQAAPRTQAVLTDALRFDWRRI-SPEHPWKVIGNLPYNVASPLIWDIVS 128

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                   +    + QKEVG+R+ A   + HYG LSV      +  + F + P  F P P
Sbjct: 129 RAE---GLKRAVFMVQKEVGQRLAAAPGNGHYGALSVWVQSYARPRLEFVVGPGAFSPPP 185

Query: 200 KVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255
           KV S V+ F P      P   ++L ++ +  F +RRK L    +R G    E  L QAG+
Sbjct: 186 KVDSAVLSFEPLPPEAQPAHPKALARLLRICFQQRRKQLGGIFRRAGLPQMERALDQAGL 245

Query: 256 ETNLRAENLSIEDFCRITNILTDNQD 281
             +LR E LS +DF R+++ L  N D
Sbjct: 246 APSLRPEALSTDDFQRLSSFLALNLD 271


>gi|302821163|ref|XP_002992246.1| hypothetical protein SELMODRAFT_186635 [Selaginella moellendorffii]
 gi|300140013|gb|EFJ06743.1| hypothetical protein SELMODRAFT_186635 [Selaginella moellendorffii]
          Length = 312

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 12/237 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I   K  GQ+ L +  I++ I + +G      V+EIG G GNLT  LL + A+KVI +E
Sbjct: 21  GIQFYKSRGQHILKNPLIVQSIVQKAGLKSTDIVLEIGPGTGNLTVKLLEV-AKKVIAVE 79

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L+      P  N L+IIQ D LK +   F         +AN+PY I + L F
Sbjct: 80  LDPRMVLELQRRVQGTPQANHLQIIQGDVLKTELPYF------DVCVANIPYQISSPLTF 133

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +S     P + +  ++FQKE   R+ A+   P Y RLSV T    +   +  +  + F
Sbjct: 134 KLLSHR---PLFRAAVIMFQKEFAMRLVAKPADPLYCRLSVNTQLLARVDHLLKVGKNNF 190

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S+V+   P     P   +    + +  F ++ KTL    ++     L+ +
Sbjct: 191 RPPPKVDSSVVRIEPRNPLPPVSFKEWDGLVRLCFNRKNKTLGSIFRQKNVVQLVER 247


>gi|317969764|ref|ZP_07971154.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Synechococcus sp. CB0205]
          Length = 278

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 121/264 (45%), Gaps = 16/264 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQ++L D ++L +I +++      TV+E+G G G LT+ LL   AR V  +E 
Sbjct: 6   HRARKRFGQHWLKDQSVLDRILQAAELTAADTVLEVGPGRGALTERLLESSARAVCAVEL 65

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L++    +P R  + + D L V+  +         ++AN+PYNI   LL   +
Sbjct: 66  DRDLVSGLQERFGANP-RFSLTEGDVLAVELPEA------TAVVANIPYNITGPLLERLV 118

Query: 139 SADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                P    +  L LL Q+EVGERI A+  S  Y  LSV      + + +  + P  F 
Sbjct: 119 GRLDRPALQPYRRLVLLVQQEVGERIRARPGSSAYSALSVRMQLLARCSTVCPVPPRCFQ 178

Query: 197 PSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL--- 250
           P PKV S V+   P        P   ++++ + +  F  RRK LR +L  L     L   
Sbjct: 179 PPPKVMSEVVALDPLPLEQRLDPALAKTVEMLLRRCFAARRKMLRNTLSGLVEAEQLQSL 238

Query: 251 -HQAGIETNLRAENLSIEDFCRIT 273
              A I    R + ++ E +  + 
Sbjct: 239 TEAAEIGLQQRPQEVAPERWVSLA 262


>gi|160903048|ref|YP_001568629.1| dimethyladenosine transferase [Petrotoga mobilis SJ95]
 gi|160360692|gb|ABX32306.1| dimethyladenosine transferase [Petrotoga mobilis SJ95]
          Length = 275

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 132/268 (49%), Gaps = 10/268 (3%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
             L  Y I  KK +GQNFL +  +  +I + S   +   +IEIG G G LT+ +    A+
Sbjct: 5   EWLKKYDIRLKKGLGQNFLSNSTVSHEIVKKSEIDENDVIIEIGTGNGILTEEIAK-KAK 63

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KVI  E D++  P+L++      N +EI  +D L  D  KF +I   ++ IAN+PY I +
Sbjct: 64  KVITFEIDERLKPLLEERFEGSKN-VEIHFEDFLNTDLSKFKDI-PKLKYIANIPYYISS 121

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           ++L          P +E    +FQKE G+R+ A+     Y  LS+          + D+S
Sbjct: 122 KILEKIFEE---SPKFEYAIFMFQKEFGQRLMAKSK-KSYSPLSIFVQTYCTVERIMDVS 177

Query: 192 PHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGEN 248
            + F P PKV S ++ F P +        +   K     F KRRKT++ +LK +    E 
Sbjct: 178 KNNFIPIPKVDSVILKFNPVYKYVEEIDPKDFMKFVHICFSKRRKTIKNNLKEIIPDTEK 237

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
            L +  I+ + R E++ +E + ++   L
Sbjct: 238 YLTEVQIDPSSRPEDIPLETYIQLYKKL 265


>gi|256420284|ref|YP_003120937.1| dimethyladenosine transferase [Chitinophaga pinensis DSM 2588]
 gi|256035192|gb|ACU58736.1| dimethyladenosine transferase [Chitinophaga pinensis DSM 2588]
          Length = 249

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 117/253 (46%), Gaps = 13/253 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ+FL D NI +KI E+     G  ++E+G G G +T+ LL +       +E D +
Sbjct: 5   KKSLGQHFLKDENICRKIVEALPVNPGQQIVEVGPGAGAITKYLLQIPDVHFKAVELDTE 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+        +  II +  L               +I N PYNI ++++F  +   
Sbjct: 65  KVQYLEKTYPAIQGK--IINESILDTPVP----YQGEFNLIGNFPYNISSQIMFRVLE-- 116

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            W     S+  +FQKEV  RI A K    YG LSVLT    K   +F++  + F P PKV
Sbjct: 117 -WRQQVPSVVGMFQKEVALRIAATKG-KEYGILSVLTQAFYKVEYLFEVHENCFNPPPKV 174

Query: 202 TSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
            S VI                   + + AFG+RRK LR  LK L  + +L  +    N R
Sbjct: 175 KSAVIRLDRLETSYDIASERKFFVLVKTAFGQRRKQLRNPLKGLFAKEVLQDS--IFNKR 232

Query: 261 AENLSIEDFCRIT 273
           AE LS+ DF  ++
Sbjct: 233 AEELSVADFAALS 245


>gi|289739481|gb|ADD18488.1| mitochondrial transcription factor [Glossina morsitans morsitans]
          Length = 334

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 140/292 (47%), Gaps = 19/292 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64
              +L+ I+  Y +   K + QNFL+D  +  KI +  G       V+E+G GPG +T+ 
Sbjct: 17  PLPTLRDIVKLYNLRAVKQLSQNFLMDERLTDKIVKQCGRIDSKDVVLEVGPGPGGITRS 76

Query: 65  LLTLGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFE-KFFNISSPIR 120
           ++    + ++V+EKD +F P   +L++  +    +++I  DD L  + E    +I+  + 
Sbjct: 77  IIRREPKHIVVVEKDARFLPTLELLRECVAPLNIQMQIFVDDILTFNIENHLPDITQRLH 136

Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +I NLP++I TRLL NW+         +      +TL FQKEV ERI A        RLS
Sbjct: 137 LIGNLPFSISTRLLINWLEDVSLRRGAFRRHDTCMTLTFQKEVAERICAPFGHEQRCRLS 196

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234
           V++   T+  + F I    F P P+V   V+  +P   P        ++K+ +  F  R+
Sbjct: 197 VMSQIWTQPFLKFVIPGTAFVPKPEVDVGVVKLMPLKEPKTTLDFRLVEKVVRHIFNMRQ 256

Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           K  R+    L   +        L  +A +E  LR   LS+++  R+    ++
Sbjct: 257 KYCRRGFGTLFPPDQRESVTFELFKEADVEDTLRPFQLSVDECLRLATAYSN 308


>gi|291235880|ref|XP_002737862.1| PREDICTED: Probable dimethyladenosine transferase-like
           [Saccoglossus kowalevskii]
          Length = 305

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 130/272 (47%), Gaps = 19/272 (6%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
              +  K+ +GQ+ L +  ++  I E +   +    +E+G G GN+T  LL    +KV+ 
Sbjct: 17  QQGVQFKRDLGQHILKNPLVVDGIIEKAALRNTDVALEVGPGTGNMTVKLLD-KVKKVVA 75

Query: 76  IEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            E D +    ++      P+  +L++I  D LK D   FF++      +ANLPY I +  
Sbjct: 76  CELDPRLAAEVQKRVQGTPSQTKLQLIIGDVLKSDLP-FFDVC-----VANLPYQISSPF 129

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F  +      PF+    L+FQ+E  +R+ A+     Y RLS+ T    +  ++  +  +
Sbjct: 130 VFKLL---LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDLVMKVGKN 186

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P PKV S+V+   P   P P   +    + + AF ++ KTL  + K      +L + 
Sbjct: 187 NFRPPPKVESSVVRLEPRNPPPPINFQEWDGLVRIAFTRKNKTLSAAFKHNSVLEMLEKN 246

Query: 254 -GIETNLR----AENLSIEDFCRITNILTDNQ 280
             I  +++    A + SI+D  ++  IL DN+
Sbjct: 247 YRIHCSVKNITVATDFSIKD--KLEKILLDNE 276


>gi|254384979|ref|ZP_05000314.1| dimethyladenosine transferase dimethyltransferase) [Streptomyces
           sp. Mg1]
 gi|194343859|gb|EDX24825.1| dimethyladenosine transferase dimethyltransferase) [Streptomyces
           sp. Mg1]
          Length = 303

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 124/279 (44%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL
Sbjct: 22  PADIRELAAALGVRPTKQKGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALL 81

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V  +E D      L    +    Q  +R  ++  DA+ V         +P  ++
Sbjct: 82  E-AADRVTAVEIDDILAAALPATIEARMPQRKDRFALVHSDAMLVTE---LPGPAPTALV 137

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L   +      P  E   ++ Q EV +R+ A+  +  YG  SV   W  
Sbjct: 138 ANLPYNVAVPVLLTMLDR---FPSIERTLVMVQAEVADRLAAEPGNKVYGVPSVKANWYA 194

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR-- 238
                  I   VF+P+P V S ++  +    PI        +  +   AF +RRKTLR  
Sbjct: 195 HVKRAGSIGRKVFWPAPNVDSGLVSLVRRAEPIKTSASKAEVFAVVDAAFAQRRKTLRAA 254

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
               +    G E  L  AG+    R E+L++E+F  I  
Sbjct: 255 LAGWAGSAAGAEAALVAAGVSPQARGESLTVEEFAAIAE 293


>gi|254455962|ref|ZP_05069391.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082964|gb|EDZ60390.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 261

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/262 (34%), Positives = 149/262 (56%), Gaps = 9/262 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK +GQNFL+D NIL+KI          T++E+G G GNLT  +L    +K+ V+EK
Sbjct: 2   IKAKKSLGQNFLVDRNILEKITNIIQIT-DETILEVGPGTGNLTSFILKKKPKKIFVVEK 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L++      ++L II DD LK++    F   S + +  NLPYNI T +L  WI
Sbjct: 61  DEKLANHLEETFK---DQLTIINDDILKINESSLFE--SKVTVFGNLPYNISTEILSKWI 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +  +   ++ +L L+FQKEV +RI A+ ++ +YGRLS+++ W+     + DI P  F P 
Sbjct: 116 TNSSKDLWFNNLILMFQKEVADRIIAKFDTSNYGRLSIISNWKLNVEKICDIKPDCFSPK 175

Query: 199 PKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGI 255
           PK+ S+++ F P  +       ++L+K+T+  F  RRK +++   +L  G + +L +  I
Sbjct: 176 PKIDSSLLFFSPKKDFFKIKNPKNLEKVTRVFFNHRRKMIKKPFNQLFNGNQKVLDELNI 235

Query: 256 ETNLRAENLSIEDFCRITNILT 277
             NLR +NL    + ++T    
Sbjct: 236 NLNLRPQNLDFNTYYKLTEAYE 257


>gi|213511764|ref|NP_001135031.1| Probable dimethyladenosine transferase [Salmo salar]
 gi|209738164|gb|ACI69951.1| Probable dimethyladenosine transferase [Salmo salar]
          Length = 306

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 12/241 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           + +  ++    +GQ+ L +  ++  I E +       V+E+G G GN+T  LL   A+KV
Sbjct: 16  VKNQGVMFNTGLGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKV 74

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +  E D +    L+      P   +L+I+  D LK +   FF++      +ANLPY I +
Sbjct: 75  VACELDGRLVAELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VANLPYQISS 128

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  + 
Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 185

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P   P P   +    + + AF ++ KTL    K    E LL 
Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVERLLE 245

Query: 252 Q 252
           +
Sbjct: 246 K 246


>gi|156393635|ref|XP_001636433.1| predicted protein [Nematostella vectensis]
 gi|156223536|gb|EDO44370.1| predicted protein [Nematostella vectensis]
          Length = 308

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 122/294 (41%), Gaps = 40/294 (13%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
              +  +   GQ+ L +  ++  + + +G     TV+EIG G GNLT  LL   ++KVI 
Sbjct: 20  KQGLRFQTEHGQHILKNPLVITSLVDKAGLRSTDTVLEIGPGTGNLTVKLLEQ-SKKVIA 78

Query: 76  IEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            E D +    L+      P  ++L ++  D LK D   FF++      +ANLPY I +  
Sbjct: 79  CELDPRMVAELQKRVQGTPLQSKLSVMVGDVLKTDLP-FFDVC-----VANLPYQISSPF 132

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F  +      PF+    L+FQ+E  +R+ A+     Y RLS+ T    +   +  +  +
Sbjct: 133 VFKLL---LHRPFFRCAVLMFQREFAQRLIAKPGDKLYCRLSINTQLLARVDHIMKVGKN 189

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ- 252
            F P PKV S+V+   P   P P   +    + + AF ++ KTL           +L + 
Sbjct: 190 NFRPPPKVESSVVRIEPKNPPPPVNFKEWDGLVRIAFVRKNKTLSACFNSRPVLEVLEKN 249

Query: 253 -------AGI--------------------ETNLRAENLSIEDFCRITNILTDN 279
                   GI                        RA  + I+DF  +  +   N
Sbjct: 250 YKIHCSLNGIMVDSDFDMKEKIQQILSESENDKKRARTMDIDDFLALLTLFNSN 303


>gi|255535076|ref|YP_003095447.1| Dimethyladenosine transferase [Flavobacteriaceae bacterium 3519-10]
 gi|255341272|gb|ACU07385.1| Dimethyladenosine transferase [Flavobacteriaceae bacterium 3519-10]
          Length = 255

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/254 (35%), Positives = 123/254 (48%), Gaps = 10/254 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK++GQ+FL+D NI KKI +S        V+E+G G G LT+ LL     +V V E 
Sbjct: 3   VKAKKHLGQHFLIDENIAKKIVDSLSYSQYTQVLEVGPGMGVLTKYLLE-KETEVFVAEI 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK+   +   R     DD LK+D  + F     + +I N PYNI +++LF  I
Sbjct: 62  DRDSVAYLKNHFPKLEARH--FSDDFLKIDIAESF--GDQVAVIGNFPYNISSQILFKII 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P    +  +FQKEV ER  A   +  YG LSVL       T +F +  +VF P 
Sbjct: 118 DFYDRVP---EMVGMFQKEVAERTAAVPRTKDYGILSVLVQALYDVTYLFTVHENVFNPP 174

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S VI    +        E L  KI +  FG+RRK L  SLK L     +       
Sbjct: 175 PKVKSGVIRLTRNPKEGLAGNEVLFKKIVKAGFGQRRKKLSNSLKVLEIPEAMQNHPF-L 233

Query: 258 NLRAENLSIEDFCR 271
             RAE LS++DF  
Sbjct: 234 EKRAEELSVQDFIS 247


>gi|158521647|ref|YP_001529517.1| dimethyladenosine transferase [Desulfococcus oleovorans Hxd3]
 gi|226729778|sp|A9A0E0|RSMA_DESOH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|158510473|gb|ABW67440.1| dimethyladenosine transferase [Desulfococcus oleovorans Hxd3]
          Length = 289

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 126/280 (45%), Gaps = 15/280 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S +TILS + I PKK +GQNFL D    + I    G      V+E+G G G LT      
Sbjct: 3   SPRTILSGHDIAPKKSLGQNFLCDPQAAEMIVRKCGLSKADVVVEVGPGTGALTIP-AAG 61

Query: 69  GARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKF-FNISSPIRIIANLP 126
            A  V  IE D +    LK+       + + ++  D +K D  +        + ++ NLP
Sbjct: 62  QAAWVYAIETDGRLIEPLKETVRAAGLDNVTVLHRDIMKTDIREICREAGRKLVVLGNLP 121

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I +++L + +         +   L+FQ+E+  RI A   +  YGR+SV   +  + + 
Sbjct: 122 YYISSQILMDLVEKREA---VDRAVLMFQQELARRIAAPPGNREYGRISVALRYCAELST 178

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKR- 243
           +  + P++FFP P V S V+  +    P    C       + + AF  RRKT++ +L   
Sbjct: 179 VARLKPNLFFPRPGVDSEVVRIVFRPWPGNRDCDEALFFAMIKSAFATRRKTIKNALSAG 238

Query: 244 ------LGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                    E LL +A +   +RAE L + DF  I     
Sbjct: 239 MTKISPSAWEELLVRADVAPTVRAETLDVGDFLNICRHYK 278


>gi|67463766|pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
 gi|67463767|pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
          Length = 285

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 19/260 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E D +    
Sbjct: 7   GQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVAE 65

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L       P  ++L+++  D LK D   F         +ANLPY I +  +F  +     
Sbjct: 66  LHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVFKLL---LH 116

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV S
Sbjct: 117 RPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVES 176

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETN 258
           +V+   P   P P   +    + +  F ++ KTL  + K    + LL +       +   
Sbjct: 177 SVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHNI 236

Query: 259 LRAENLSIEDFCRITNILTD 278
           +  E+ SI D  +I  ILT 
Sbjct: 237 IIPEDFSIAD--KIQQILTS 254


>gi|195379696|ref|XP_002048613.1| GJ14068 [Drosophila virilis]
 gi|194155771|gb|EDW70955.1| GJ14068 [Drosophila virilis]
          Length = 420

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 144/293 (49%), Gaps = 19/293 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64
              S++ ++  YK+   K + QNFL+D  +  KI +++G       V+E+G GPG +T+ 
Sbjct: 101 PLPSIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKAAGRIDPRDIVLEVGPGPGGITRS 160

Query: 65  LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIR 120
           +L    ++++++EKD +F     +L++ +     +++I  +D L+ + E+   + +  + 
Sbjct: 161 ILRRQPQRLMLVEKDARFTETLQLLRECARPLNVQVDIYHEDILRFNIEQHVPDTAQRLH 220

Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +I NLP+ I TRLL NW          +      +TL FQKEV ERI A+  S    RLS
Sbjct: 221 LIGNLPFAISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAKLGSDQRCRLS 280

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234
           +++   T+  + F I    F P P+V   V+  IP   P        ++++ +  F  R+
Sbjct: 281 IMSQIWTEPLLKFIIPGKAFVPKPQVDVGVVKVIPLKKPKTQLPFSLVERVVRHIFSMRQ 340

Query: 235 KTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           K  R+    L            L   A ++  LR   LS+++  R+ ++  D+
Sbjct: 341 KYCRRGYSTLLPPEGREETTHALFQLADVQDTLRPFELSVDECLRLADVYADH 393


>gi|320166025|gb|EFW42924.1| dimethyladenosine transferase [Capsaspora owczarzaki ATCC 30864]
          Length = 313

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 24/259 (9%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I   K  GQ+ L +  I+  I E +G  +  TV+EIG G GNLT  LL   ++KV+  E 
Sbjct: 28  IQFDKSFGQHILKNPLIVNGIIEKAGLRNTDTVLEIGPGTGNLTMKLLE-ASKKVVACEV 86

Query: 79  DQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L+     + +   LEI+  D LK D   FF++      +AN+PY I +  +F 
Sbjct: 87  DVRLVAELQKRVMGTPYQRNLEILVGDVLKADLP-FFDVC-----VANMPYQISSPFVFK 140

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      PF+    L+FQKE  +R+ A+   P Y RLSV T    +   +  +  + F 
Sbjct: 141 LL---LHRPFFRCAVLMFQKEFAQRLYAKPGDPAYCRLSVNTQLLARVDHLMKVGRNNFR 197

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S V+   P   P P   +    + +  F ++ KTL  +        +L     +
Sbjct: 198 PPPQVESAVVRIEPRNPPPPINFQEWDGLVRITFVRKNKTLHAAFMSSAVLEML-----D 252

Query: 257 TNLRAENLSIEDFCRITNI 275
            N R        FC + N 
Sbjct: 253 RNYR-------TFCALNNT 264


>gi|294790209|ref|ZP_06755367.1| dimethyladenosine transferase [Scardovia inopinata F0304]
 gi|294458106|gb|EFG26459.1| dimethyladenosine transferase [Scardovia inopinata F0304]
          Length = 376

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 133/304 (43%), Gaps = 37/304 (12%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ + S     P K  GQNF++D   ++KIA  +      T+IE+G G G+LT  LL
Sbjct: 44  AADIRRLASEINTKPTKKFGQNFVIDPGTVRKIASLATGGKPRTIIEVGPGLGSLTLALL 103

Query: 67  TLGARKVIVIEKDQQFF----PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             G+  V+ IE D          + +   +  +   ++  DAL+             ++ 
Sbjct: 104 ETGS-TVVSIEIDSLLAQKIPSTVHEFMPRADSHFHLVAKDALEFTPSDLEQALGGGKVS 162

Query: 123 A-----NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
                 NLPYN+   ++ + +      P  +S  ++ QKEV ER+TA   S  YG  SV 
Sbjct: 163 HLTLAANLPYNLAVPIILSLLDR---FPTLDSFVVMVQKEVAERLTAGPGSKIYGVPSVK 219

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             W  +A +   IS  VF+P+P V S ++ F           +    +   AF +RRKTL
Sbjct: 220 LAWYGQAKLAGTISRTVFWPAPHVDSALVQFRRTGQRDQSLKKLTFSLIDSAFSQRRKTL 279

Query: 238 RQSLKR------------------------LGGENLLHQAGIETNLRAENLSIEDFCRIT 273
           + +LK+                            +L + +GI+ + R E LS++DF R+ 
Sbjct: 280 KAALKKPLRSLCPVSPETASKAKPLSNSSPTLYSDLFNNSGIDPSRRGETLSVDDFVRLA 339

Query: 274 NILT 277
             ++
Sbjct: 340 QSIS 343


>gi|302800922|ref|XP_002982218.1| hypothetical protein SELMODRAFT_116036 [Selaginella moellendorffii]
 gi|300150234|gb|EFJ16886.1| hypothetical protein SELMODRAFT_116036 [Selaginella moellendorffii]
          Length = 312

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 12/237 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I   K  GQ+ L +  +++ I + +G      V+EIG G GNLT  LL + A+KVI +E
Sbjct: 21  GIQFYKSRGQHILKNPLVVQSIVQKAGLKSTDIVLEIGPGTGNLTVKLLEV-AKKVIAVE 79

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L+      P  N L+IIQ D LK +   F         +AN+PY I + L F
Sbjct: 80  LDPRMVLELQRRVQGTPQANHLQIIQGDVLKTELPYF------DVCVANIPYQISSPLTF 133

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +S     P + +  ++FQKE   R+ A+   P Y RLSV T    +   +  +  + F
Sbjct: 134 KLLSHR---PLFRAAVIMFQKEFAMRLVAKPADPLYCRLSVNTQLLARVDHLLKVGKNNF 190

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S+V+   P     P   +    + +  F ++ KTL    ++     L+ +
Sbjct: 191 RPPPKVDSSVVRIEPRNPLPPVSFKEWDGLVRLCFNRKNKTLGSIFRQKNVVQLVER 247


>gi|148242414|ref|YP_001227571.1| dimethyladenosine transferase [Synechococcus sp. RCC307]
 gi|166221711|sp|A5GTK9|RSMA_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|147850724|emb|CAK28218.1| Dimethyladenosine transferase [Synechococcus sp. RCC307]
          Length = 274

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 117/262 (44%), Gaps = 11/262 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++L D ++L++I  ++       V+E+G G G LT  LL   A  V  +E
Sbjct: 5   GHHARKRFGQHWLKDESVLQRIVAAAALQPDDHVLEVGPGRGALTAQLLASPAASVQAVE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   +  P R ++   D L +          P +++AN+PYNI   LL   
Sbjct: 65  LDRDLVAGLQQRFAAEP-RFQLQSGDVLALPQLGD-GERRPTKVVANIPYNITGPLLERL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     P  P ++ L LL Q+EV  RI+A+     +  LSV          +  + P  F
Sbjct: 123 VGRLDRPVEPPYQRLVLLVQQEVARRISARAGQSSFSALSVRMQLLAHCRSVCPVPPRCF 182

Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR----LGGEN 248
            P PKV S VI   P      P     + ++ + + AF  RRK +R +L      +G E 
Sbjct: 183 QPPPKVQSEVISLDPLPADQRPPQAVAKQVEHLLRLAFSARRKMVRNTLASAAPAVGLEV 242

Query: 249 LLHQAGIETNLRAENLSIEDFC 270
            L  AG+    R + ++ + + 
Sbjct: 243 WLADAGLTPQQRPQEIAAQQWV 264


>gi|219849174|ref|YP_002463607.1| dimethyladenosine transferase [Chloroflexus aggregans DSM 9485]
 gi|219543433|gb|ACL25171.1| dimethyladenosine transferase [Chloroflexus aggregans DSM 9485]
          Length = 290

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 130/295 (44%), Gaps = 23/295 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++  L    + P + MGQNFLLD ++L  I   +  +   TVIE+G G G 
Sbjct: 1   MNPYLNPQRIRAALRALNLRPTRGMGQNFLLDGSVLATIVAEAALVPADTVIEVGPGLGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           LT  LL   A +VI +E D++    L    S   N L ++Q D L +           + 
Sbjct: 61  LTWELLPR-AGRVICVELDRRLADRLAAEFSGRSN-LHLVQGDVLTIAPADLLARAAATP 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P +++AN+PY I   LL +++ A   P       LL Q EV +RI A      Y  L+  
Sbjct: 119 PYKLVANIPYAITAPLLRHFLEATPPPDL---SVLLVQWEVAQRICAGPG--DYSVLAHA 173

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRK 235
             +  + +++  +    FFP+P V S ++     L P     +   L ++ +  F   RK
Sbjct: 174 IQFYAEPSIVAHVPASSFFPAPAVDSAILRLQRRLQPPVTVPDVNMLFRLIKAGFLHARK 233

Query: 236 TLRQSL-----------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            L  +L            R      LH+ GI+   RAE +++ ++  +   L+++
Sbjct: 234 QLGNALPGGLAALGVTIPREQIMTALHKIGIDPQRRAETVTLAEWANLLAALSES 288


>gi|225704090|gb|ACO07891.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss]
          Length = 306

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 12/241 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           + +  ++    +GQ+ L +  ++  I E +       V+E+G G GN+T  LL   A+KV
Sbjct: 16  VKNQGVMFNTGLGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKV 74

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +  E D +    L+      P   +L+I+  D LK +   FF++      + NLPY I +
Sbjct: 75  VACELDGRLVAELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VTNLPYQISS 128

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  + 
Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 185

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P   P P   +    + + AF ++ KTL    K    E LL 
Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLE 245

Query: 252 Q 252
           +
Sbjct: 246 K 246


>gi|195016027|ref|XP_001984325.1| GH15074 [Drosophila grimshawi]
 gi|193897807|gb|EDV96673.1| GH15074 [Drosophila grimshawi]
          Length = 415

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 19/293 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64
              +++ ++  YK+   K + QNFL+D  +  KI +S+G       V+E+G GPG +T+ 
Sbjct: 101 PLPTIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGGITRS 160

Query: 65  LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIR 120
           +L    +++I++EKD +F     +L++ +S    +++I  +D L+ + EK   + +  + 
Sbjct: 161 ILRRQPQRLILVEKDARFTETLQLLRECASPLQMQVDIYHEDILRFNIEKHVPDTAQRLH 220

Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +I NLP++I TRLL NW          +      +TL FQKEV ERI AQ  S    RLS
Sbjct: 221 LIGNLPFSISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAQLGSEQRCRLS 280

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234
           V++   T+  + F I    F P P+V   V+  +P   P        ++++ +  F  R+
Sbjct: 281 VMSQIWTQPLLKFIIPGKAFVPKPQVDVGVVKVMPLKQPKTQLPFALVERVVRHIFSMRQ 340

Query: 235 KTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           K  R+    L           NL   A ++  LR   LS+ +  R+ ++  ++
Sbjct: 341 KYCRRGFGTLLPPDGREEITHNLFQLADVQDTLRPFELSVAECLRLADVYAEH 393


>gi|194748282|ref|XP_001956577.1| GF25284 [Drosophila ananassae]
 gi|190623859|gb|EDV39383.1| GF25284 [Drosophila ananassae]
          Length = 330

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 19/293 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQM 64
              +++ ++  YK+   K + QNFL+D  +  KI +S+G       V+E+G GPG +T+ 
Sbjct: 17  PLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDHSDIVLEVGPGPGGITRS 76

Query: 65  LLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIR 120
           +L    +++I++EKD++F     +L++ +     +L+   DD L+ + E    + +  + 
Sbjct: 77  ILRRQPQRLILVEKDERFGETLQLLRECAKPLNIQLDTYYDDILRFNIEHHVPDTTQRLH 136

Query: 121 IIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +I NLP+ I TRLL NW          +      +TL FQKEV ERI A        RLS
Sbjct: 137 LIGNLPFAISTRLLINWYEDLAARRGAFRRNDTCMTLTFQKEVAERICAPVGGEQRCRLS 196

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRR 234
           V++   T+  M F I    F P P+V   V+  IP   P        ++++ +  F  R+
Sbjct: 197 VMSQIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFPLVERVVRHIFSMRQ 256

Query: 235 KTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           K  R+    L          +NL  +A ++  LR+  LS+E   R+  + +++
Sbjct: 257 KYCRRGYGTLFPQEGREEVTQNLFQRAEVQDTLRSFELSVEQCLRLAEVYSEH 309


>gi|282163396|ref|YP_003355781.1| probable dimethyladenosine transferase [Methanocella paludicola
           SANAE]
 gi|282155710|dbj|BAI60798.1| probable dimethyladenosine transferase [Methanocella paludicola
           SANAE]
          Length = 276

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 23/269 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P K   Q+FL+DLNILKKI   +       V+EIG GPGNLT+ LL   AR V  IE 
Sbjct: 11  IAPDKRKDQHFLIDLNILKKIVAIADIHKDEDVLEIGTGPGNLTE-LLAQKARHVYTIEM 69

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     +L++      + + II+ +ALKV+F +F       +++ANLPY+I + + F  +
Sbjct: 70  DPALVALLEEKFKG--SNVTIIKGNALKVEFPRF------DKVVANLPYSISSDVTFKLL 121

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             +     ++   L++Q+E  +R+ A+   P Y RLSV         ++  + P  F P 
Sbjct: 122 KNN-----FKLGILMYQREFAQRMIARVGEPDYSRLSVDVQHFADVEILMKVPPQAFSPP 176

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR-------LGGENLL 250
           P+V S V+   P          +L   +   AF +RRK LR +L          G + L+
Sbjct: 177 PEVESAVVRVTPRPAAYSVKDRALFMALVTAAFTQRRKRLRNALVNGAHIMGIHGMKALV 236

Query: 251 HQAGIET-NLRAENLSIEDFCRITNILTD 278
            +   +  + RAE +S E++  + + L +
Sbjct: 237 SRLPPDLMDKRAEEVSPEEYAALADRLYE 265


>gi|145590046|ref|YP_001156643.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048452|gb|ABP35079.1| dimethyladenosine transferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 258

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 15/264 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  ++  I         + +IEIG G G LT+  L     ++ ++E 
Sbjct: 2   HRARKRFGQNFLQDQGVIYSIVALINPSPDMHIIEIGPGLGALTRP-LLSSLDQLDLLEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLL 134
           D+      +    ++   L++I+ DALK +F ++           +++ NLPYNI + LL
Sbjct: 61  DRDLVAYWEK---ENLKGLKVIEGDALKFNFLEWAQNCDSKKGLCKVVGNLPYNISSPLL 117

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F+ +SA T     +    + Q EV ER+ A   S  + RLSV+   R    ++ ++ P  
Sbjct: 118 FHLVSAATQ---IDEQVFMLQAEVVERMVAPAGSSDFSRLSVMLQARYDMELVLEVPPEA 174

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S V+  IP  +      +  +L+++   AF +RRK LR +L+       L  
Sbjct: 175 FDPQPKVNSAVVRMIPRQDFSLTTKQWHALEQVVAAAFSQRRKMLRTNLQVFA--ERLKL 232

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
             IE   RA+++S++ +     +L
Sbjct: 233 TDIELKARAQDISVDRYIEWARVL 256


>gi|78184856|ref|YP_377291.1| dimethyladenosine transferase [Synechococcus sp. CC9902]
 gi|119365856|sp|Q3AXF3|RSMA_SYNS9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78169150|gb|ABB26247.1| dimethyladenosine transferase [Synechococcus sp. CC9902]
          Length = 274

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 125/274 (45%), Gaps = 13/274 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++L D  +L +I E++       V+E+G G G LT+ LL   A ++  IE
Sbjct: 5   GHTARKRFGQHWLRDARVLDQIVEAARLQQDDCVLEVGPGRGALTERLLASPAAQIHAIE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L D      +R  + + D L+       +     +++AN+PYNI   LL   
Sbjct: 65  LDRDLVRGLHDRFGS-ESRFSLREGDVLEAPLH-LVDGGFANKVVANIPYNITGPLLARL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           I     P  P ++ L LL QKEV ERI A+     +  LSV        +++  + P  F
Sbjct: 123 IGRLDRPVEPTYDCLVLLLQKEVAERIRAKPGRSSFSALSVRMQLLADCSLVCPVPPRCF 182

Query: 196 FPSPKVTSTVIHFIPH--LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S VI   P      +P  L   ++ + ++AF  RRK LR +L  +    +L  
Sbjct: 183 QPPPKVQSEVILLKPFPPERRLPIDLASRVEALLKQAFQARRKMLRNTLAGVIDPQVLEP 242

Query: 253 A----GIETNLRAENLSIEDFCRITNILTDNQDI 282
                GI    R + ++ E +  +   L  NQD+
Sbjct: 243 LAASVGISLQQRPQEVAAEAWVALARGL--NQDV 274


>gi|225850076|ref|YP_002730310.1| dimethyladenosine transferase [Persephonella marina EX-H1]
 gi|254807878|sp|C0QUE5|RSMA_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|225645312|gb|ACO03498.1| dimethyladenosine transferase [Persephonella marina EX-H1]
          Length = 265

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 14/259 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              PKK  GQ+ L+   +++KI E     +  TV+EIG G G LT+ +L    + V  IE
Sbjct: 3   NFRPKKRFGQHLLISKGVIQKIVECLDIKEDDTVVEIGVGTGQLTEEILRRNPKIVYGIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+  +PI+++      N   +I++D   VD  K  +    I++  NLPYN+ + +L N 
Sbjct: 63  IDKTVYPIIEERFKDFKN-FVLIKEDFFDVDLRKLTD--GKIKLTGNLPYNVASHILVN- 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                +    +    + QKEV +++  +  +  Y  +SV          +  +    F P
Sbjct: 119 --TAFYIDILQLAVFMIQKEVAQKLVGKPKTKDYTFMSVFLQTFFDIDYVMSVPARFFSP 176

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            PKVTS VI  IP    +P  L+ +KK        F  RRK LR  +     +++L +AG
Sbjct: 177 PPKVTSAVIRMIPKEK-LPVSLDHMKKYKNFVSMLFSNRRKMLRSKI----DKDILERAG 231

Query: 255 IETNLRAENLSIEDFCRIT 273
           I+   RAE LS++DF R+ 
Sbjct: 232 IDPKARAEELSVDDFIRLF 250


>gi|311087037|gb|ADP67117.1| dimethyladenosine transferase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 308

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 142/284 (50%), Gaps = 20/284 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT N K H            P K  GQNFL++ + +K I +        T++EIG G   
Sbjct: 36  MTKNFKKH-----------FPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119
           LT+ +  L   ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     I
Sbjct: 85  LTKPMCELL-EELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RI  NLPYNI T L+             + +  + QKEV ER+ +   +  YGRLS+++ 
Sbjct: 142 RIFGNLPYNISTSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQ 198

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237
           +     ++ ++SP  F P PKV S  I+  PH N       +  L  IT++AF  RRK L
Sbjct: 199 YYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKIL 258

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           R SLK L  E  L +  I +NLRAEN+S+  +C++ N L    +
Sbjct: 259 RHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYLYKKSN 302


>gi|33519600|ref|NP_878432.1| dimethyladenosine transferase [Candidatus Blochmannia floridanus]
 gi|62900575|sp|Q7VQK3|RSMA_BLOFL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33517263|emb|CAD83647.1| dimethyladenosine transferase [Candidatus Blochmannia floridanus]
          Length = 271

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 10/258 (3%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ FL D NI+  I           VIEIG G G LT+ +  +    +I+IE+D   
Sbjct: 13  KKWGQIFLKDQNIIHSIISILNLKKYQNVIEIGPGLGALTKPISDI-IDFLILIERDPNL 71

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISAD 141
              L    +    +++I   DA+ +DF K   N +  IR+I NLPYNI T+L+ +     
Sbjct: 72  VNRLLHTFT--SKKVKIFNKDAMTIDFSKLLTNPNQKIRLIGNLPYNISTKLIIHLYK-- 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +      +  + QKEV +RI AQ N+  YGRLS+   +  K   + ++    F P PKV
Sbjct: 128 -YINIIHDMHFMLQKEVAQRIVAQPNNKAYGRLSIFAQYYCKVQALLEVPKKSFIPIPKV 186

Query: 202 TSTVIHFIPH--LNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            S ++ FIP+   NP P   +  L  +T+ AF +RRK +  SL  L     + Q GI T 
Sbjct: 187 ESMIVQFIPYHTNNPYPTVNISLLSLLTKFAFHQRRKIIHNSLSSLLNSTEIIQCGINTE 246

Query: 259 LRAENLSIEDFCRITNIL 276
            RAENL+I+ FC++T IL
Sbjct: 247 SRAENLTIQQFCKLTTIL 264


>gi|269926972|ref|YP_003323595.1| dimethyladenosine transferase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790632|gb|ACZ42773.1| dimethyladenosine transferase [Thermobaculum terrenum ATCC BAA-798]
          Length = 288

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 143/292 (48%), Gaps = 20/292 (6%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN  H  + IL  Y + PKK +GQNFL+   +L+ I ++S      T++EIG G G LT
Sbjct: 1   MNNNFHDPRLILKKYGLYPKKGLGQNFLISPKVLRTILQASEITPQDTILEIGPGTGVLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE----KFFNISSP 118
           + L    AR V+ IE D+    IL+   +Q+PN + I+Q + L+++      +   I   
Sbjct: 61  RHLA--AARCVVAIELDETLVQILRQELAQYPN-IHIVQGNILEIEHPQLVAELCGIEKN 117

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
            +II NLPY I +  +  ++     P     + ++ QKEV ERITA    P    L+V  
Sbjct: 118 YKIIGNLPYYITSHAIRRFLEIQPSPSL---VIIMVQKEVAERITATP--PKMSLLAVSV 172

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKT 236
            +     M+  +    F P P+V S V+      +P       +   +I    F ++RK+
Sbjct: 173 QYYAIPEMVTLVRRTAFIPPPEVDSAVLRLRVREHPLFPDIPSDIYFRIVSAGFAQKRKS 232

Query: 237 LRQSLK------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           L  SL       +     LL +A I+ N+RAE L++ED+ RI   L + +  
Sbjct: 233 LLNSLSSSLNLPKSRIATLLDKASIDHNVRAEQLTLEDWARICRQLMECESY 284


>gi|86160103|ref|YP_466888.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|122064278|sp|Q2IFT9|RSMA_ANADE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|85776614|gb|ABC83451.1| dimethyladenosine transferase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 284

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 23/290 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M ++  S + +L  Y +  KK  GQNFL +  +L  IA  +    G  V+E+GAG G+LT
Sbjct: 1   MTDRYPSPRALLDRYDLRAKKSWGQNFLGEEAVLDDIARLAAPRAGDPVLELGAGLGHLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---------F 113
             LL  GAR V+ +E+D+    +L+    +  +R+ +++ DA ++D              
Sbjct: 61  ARLLARGAR-VVAVERDRDMARVLR---GELGDRITLLEADAARLDHAALAARFGAPAAA 116

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
              + + ++ NLPY++ + +LF+ +              L Q+EV ER+ A   S  +G 
Sbjct: 117 GEGARLAVVGNLPYHLTSPILFSILDQVAH---VSRAVFLLQREVAERLAAPPASRDWGL 173

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGK 232
           LSVL     + ++   + P  F+P PKV S V+  +              +++ +  FG 
Sbjct: 174 LSVLLQREAEVSVERIVPPGAFWPPPKVESAVLCALFRPPADAVGDPARFRRLVKAGFGL 233

Query: 233 RRKTLRQSL--KRLGGENLLH----QAGIETNLRAENLSIEDFCRITNIL 276
           RRKTLR +L   +L     L      AG++   R E L++ ++  +   L
Sbjct: 234 RRKTLRNALGSAKLAEPARLEAAFAAAGVDPGRRGETLTLAEWAALDRAL 283


>gi|148654432|ref|YP_001274637.1| dimethyladenosine transferase [Roseiflexus sp. RS-1]
 gi|148566542|gb|ABQ88687.1| dimethyladenosine transferase [Roseiflexus sp. RS-1]
          Length = 297

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/300 (27%), Positives = 133/300 (44%), Gaps = 31/300 (10%)

Query: 1   MTMNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT++N       ++  L    + P + MGQNFL+D   L  I  ++      TV+E+G G
Sbjct: 1   MTVSNPYLSRARVRAALHALGLRPSRSMGQNFLIDGAALATIVTAAALTADDTVVEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G LT  L+   AR V+ +E D++    L+      PN L IIQ D L++          
Sbjct: 61  LGVLTWELVQR-ARTVVAVELDRRLAERLRTEFRTFPN-LAIIQGDVLRLPPATILAEHD 118

Query: 118 --------PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
                   P +++ANLPY I +  L +++S    P     + +L Q+EV  RI A+    
Sbjct: 119 PDAASGARPYKVVANLPYAITSAALRHFLSTPLRPTL---MVVLVQQEVAARICARAGDL 175

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQ 227
               L+       +  ++  +    FFP+P+V S+V+    H  P       E+L ++ +
Sbjct: 176 --SVLAHAVQIYAEPEIVARVPASSFFPAPEVDSSVLRLRIHPQPAVVSDQPEALLRLIK 233

Query: 228 EAFGKRRKTLRQSL-----------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             F   RK L  +L            R    + L  AGI+   RAE +++E++  +   L
Sbjct: 234 AGFLHPRKQLGNALPGGMAAMGMKIDRQRVLDALAAAGIDPTRRAETVTLEEWGAVYRAL 293


>gi|57525891|ref|NP_001003556.1| probable dimethyladenosine transferase [Danio rerio]
 gi|50417873|gb|AAH78286.1| Zgc:101122 [Danio rerio]
          Length = 306

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 12/249 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K       +    I+    +GQ+ L +  ++  I E +       V+E+G G GN+T  L
Sbjct: 8   KKSRTHQEVKSQGIMFNTGIGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKL 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KV+  E D +    L+      P  N+L+I+  D LK +   FF++      +A
Sbjct: 68  LE-KAKKVVACELDARLVAELQKRVQCTPMQNKLQILIGDVLKTELP-FFDVC-----VA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I +  +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +
Sbjct: 121 NLPYQISSPFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
              +  +  + F P PKV S+V+   P   P P   +    + + AF ++ K L  + K 
Sbjct: 178 VDHLTKVGKNNFRPPPKVESSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKMLSAAFKS 237

Query: 244 LGGENLLHQ 252
              E LL +
Sbjct: 238 AAVEKLLEK 246


>gi|295838307|ref|ZP_06825240.1| dimethyladenosine transferase [Streptomyces sp. SPB74]
 gi|295826962|gb|EFG65164.1| dimethyladenosine transferase [Streptomyces sp. SPB74]
          Length = 301

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 128/288 (44%), Gaps = 21/288 (7%)

Query: 1   MTMNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT  +       ++ + +   + P K  GQNF++D N +++I  ++   +  TV+E+G G
Sbjct: 1   MTRTDPLLGPADIRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQF----FPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
            G+LT  LL + A  V  +E D          +     +   R  ++  DAL+V   +  
Sbjct: 61  LGSLTLALLEVAAD-VTAVEIDGTLAAALPATVAARLPEKAERFRLVHSDALRV---REL 116

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
              +P  ++ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG 
Sbjct: 117 PGPAPTALVANLPYNVAVPVLLHMLE---HFPSVERTLVMVQAEVADRLAAPPGSRVYGV 173

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFG 231
            SV   W         I   VF+P+P V S ++  +    P+        +  +   AF 
Sbjct: 174 PSVKAAWYAHVKRAGSIGRSVFWPAPNVDSGLVSLVRREEPLTTSASRREVFAVVDAAFA 233

Query: 232 KRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           +RRK LR      +      E  L  AG+    R E+L++E+F RI  
Sbjct: 234 QRRKGLRAALAGWAGSAAAAEEALRAAGVSPLARGESLTVEEFARIAE 281


>gi|74222329|dbj|BAE26964.1| unnamed protein product [Mus musculus]
          Length = 313

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 19/268 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+   
Sbjct: 27  GLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACG 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFF------DACVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 256

Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278
               ++  +  E+ SI D  +I  ILT 
Sbjct: 257 IHCSVQNTVIPEDFSIAD--KIQQILTS 282


>gi|218885605|ref|YP_002434926.1| dimethyladenosine transferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756559|gb|ACL07458.1| dimethyladenosine transferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 270

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 126/264 (47%), Gaps = 8/264 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               KK +GQNFL D NI  KI  +        VIEIG GPG LT+ +   G  ++ ++E
Sbjct: 9   GPRAKKSLGQNFLRDRNIAAKIVAALRIGPEDRVIEIGPGPGALTRHIHAAGPAQLFLLE 68

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           KD  +           P  +  +  DAL   +E+  +  S  ++I NLPYN+ + L+++ 
Sbjct: 69  KDYHWATEHGRTRPAEPPVITPVLTDALLFPWERLTSARS-WKVIGNLPYNVASPLMWDI 127

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +S     P       + QKEVGERI A   S  YG LSV         M F + P VF P
Sbjct: 128 LSTA---PGLARAVFMIQKEVGERIVAAPGSGAYGALSVWLQSFVTPRMEFIVPPQVFVP 184

Query: 198 SPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQA 253
            PKV S V+ F+P            L ++ +  F +RRK L++ L+         LL   
Sbjct: 185 RPKVDSAVLSFVPLGAARGRFDPARLSRLLKVCFQQRRKQLQRILRGYVQGDVPALLAGL 244

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           G++  +R E+L+ EDF  ++  + 
Sbjct: 245 GLDPAVRPESLAPEDFHMLSESVK 268


>gi|119571771|gb|EAW51386.1| dimethyladenosine transferase, isoform CRA_c [Homo sapiens]
          Length = 266

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 12/237 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEK 253


>gi|114600101|ref|XP_001136315.1| PREDICTED: dimethyladenosine transferase isoform 1 [Pan
           troglodytes]
 gi|297675339|ref|XP_002815640.1| PREDICTED: probable dimethyladenosine transferase-like isoform 2
           [Pongo abelii]
 gi|12803983|gb|AAH02841.1| DIMT1L protein [Homo sapiens]
          Length = 275

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 12/237 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEK 253


>gi|259089147|ref|NP_001158611.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss]
 gi|225705252|gb|ACO08472.1| Probable dimethyladenosine transferase [Oncorhynchus mykiss]
          Length = 306

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 12/241 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           + +  ++    +GQ+ L +  ++  I E +       V+E+G G GN+T  LL   A+KV
Sbjct: 16  VKNRGVMFNTGLGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKV 74

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +  E D +    L+      P   +L+I+  D LK +   FF++      +ANLPY I +
Sbjct: 75  VACELDGRLVAELQKRVQCTPMQTKLQILVGDVLKTELP-FFDVC-----VANLPYQISS 128

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  + 
Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 185

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P   P P   +    + + AF ++ KTL    K    E LL 
Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLE 245

Query: 252 Q 252
           +
Sbjct: 246 K 246


>gi|67458648|ref|YP_246272.1| dimethyladenosine transferase [Rickettsia felis URRWXCal2]
 gi|67004181|gb|AAY61107.1| Dimethyladenosine transferase [Rickettsia felis URRWXCal2]
          Length = 243

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/240 (37%), Positives = 134/240 (55%), Gaps = 7/240 (2%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + ++I P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 7   PSIAKHAASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 66

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                + VIE D++  P+L +I   +PN L II+ DALK++          + II+NLPY
Sbjct: 67  KNPASLTVIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDL--GYDKVTIISNLPY 123

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +IGT L+  W+          ++TL+ QKEV ERI A  ++  YGRLSV+    TK    
Sbjct: 124 HIGTELVIRWLKEAR---LITNMTLMLQKEVVERICAMPSTKAYGRLSVICQLITKVEKC 180

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGG 246
           FD++P  F+P PKV S ++  IP  NP     +  +++IT+ AF  RRK ++ SLK L  
Sbjct: 181 FDVAPTAFYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKNLVP 240


>gi|187735621|ref|YP_001877733.1| dimethyladenosine transferase [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425673|gb|ACD04952.1| dimethyladenosine transferase [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 459

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/283 (27%), Positives = 136/283 (48%), Gaps = 11/283 (3%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   ++ +L  +++ P K +GQNFL D N+ + I E         V+E+G G G+LT+  
Sbjct: 2   KPSEIRNVLEDHEVRPSKSLGQNFLTDENVARWIVEQLEIRPQDCVVEVGPGTGSLTEHA 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
             L  RK++++E D +     K+  +  P+ +E+   D    D    F   +P++ + NL
Sbjct: 62  APLC-RKLVLVEFDSRLAEYQKERWAGDPH-VEVHHADGASWDPRGLF-AEAPVKFLGNL 118

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY+ G  +L N++S    P   E   ++ QKE  +RI A  +   +G LS+         
Sbjct: 119 PYSAGGAILQNFLSR---PSAVERAVVMLQKEFIDRILATPDDDAFGLLSLRIQKNWIPR 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            +  I P  F P P++ STV+   P       P     + ++ ++AF +RRK L++ L  
Sbjct: 176 ALKTIPPEAFHPRPRIDSTVMLLTPRPARELPPYDDRLMDELMRKAFSQRRKQLKKQLPA 235

Query: 244 LGG-ENLLHQAGIETNLRAENLSIEDFCRITNILTDN--QDIA 283
               E +    G+  + RAE L++  +  +  +   N  +D+A
Sbjct: 236 SPPWEGVAASLGLSPSARAEELNLSQWVELARVYDTNPLKDVA 278


>gi|320335301|ref|YP_004172012.1| ribosomal RNA small subunit methyltransferase A [Deinococcus
           maricopensis DSM 21211]
 gi|319756590|gb|ADV68347.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus
           maricopensis DSM 21211]
          Length = 282

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 151/278 (54%), Gaps = 17/278 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ ++  + I   K +GQNFL+D N+L+ IA++ G+  G++V+E+G G G LT+ +
Sbjct: 11  SPRTVRDLMQRHGIRATKSLGQNFLVDGNVLRSIADAGGAASGVSVLEVGPGLGVLTREV 70

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              GA  V+ +EKD++  P+L +  +     +E++  DALK D+++  + +   R+IANL
Sbjct: 71  AERGAH-VVTLEKDERLRPVLAETLAGLD--VEVVWGDALKFDYDRLPDGT---RVIANL 124

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I T LL  ++++        S T+L Q+EV ER+ A+     YG +S L     +  
Sbjct: 125 PYYISTALLSKFMASAR----IVSATVLVQREVAERLAAKPGEDAYGFMSALAALHGRVR 180

Query: 186 MMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           ++ D+    F P+P VTS+V+   F    +        L ++ + A   RRKT+R +L+ 
Sbjct: 181 IVRDVPKGAFIPAPDVTSSVVRLDFTGFEDSGQKPDARLIRLMEAALHHRRKTMRNNLRM 240

Query: 244 LG-----GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G      E  L   G+  ++RAE++++ D  R    L
Sbjct: 241 AGFDAGAVEQALETVGLRADVRAEDVALRDMHRFAQAL 278


>gi|307152257|ref|YP_003887641.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822]
 gi|306982485|gb|ADN14366.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822]
          Length = 279

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 129/278 (46%), Gaps = 15/278 (5%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L     L +I +++   +   ++EIG G G LT+ LL      V+ +E D
Sbjct: 4   RPRKRFAQHWLRSEQALSEIIQAAQLKNTDRLLEIGPGTGILTRRLLPE-VESVVAVEID 62

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDF----EKFFNISSPIRIIANLPYNIGTRLLF 135
           +     L     Q  N L ++Q D L +D       F   +   +++AN+PYNI   +L 
Sbjct: 63  RDLCKKLVKSLGQLDNFL-LLQGDILSLDLTTELAPFPKFTPFNKVVANIPYNITGPILE 121

Query: 136 NWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             +   + P    +E + LL QKEV ER+TA+  +  Y  LS+   +      + ++   
Sbjct: 122 YLLGTISEPGHQKYELIVLLMQKEVAERLTAKPGTKAYSALSIRVQYLAACEWICEVPAR 181

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRL----GGEN 248
            F+P PKV S V+   P     P      L  + +  F  RRK L  +LK +        
Sbjct: 182 AFYPPPKVDSAVVRLRPQRVARPANNPRQLDTLVKLGFANRRKMLHNNLKGIIELERLTE 241

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT--DNQDIAI 284
           LL +  I    RAE LS+E +  ++N LT   N D+++
Sbjct: 242 LLEKLEINPQCRAEELSLEQWIELSNQLTINTNHDLSL 279


>gi|311085884|gb|ADP65966.1| dimethyladenosine transferase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 308

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 20/284 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT N K H           +P K  GQNFL++ + +K I +        T++EIG G   
Sbjct: 36  MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119
           LT+ +  L   ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     I
Sbjct: 85  LTKPMCELL-EELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RI  NLPYNI T L+             + +  + QKEV ER+ +   +  YGRLS+++ 
Sbjct: 142 RIFGNLPYNISTSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQ 198

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237
           +     ++ ++SP  F P PKV S  I+  PH N       +  L  IT++AF  RRK L
Sbjct: 199 YYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKIL 258

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           R SLK L  E  L +  I +NLRAEN+S+  +C++ N L    +
Sbjct: 259 RHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYLYKKSN 302


>gi|258645613|ref|ZP_05733082.1| dimethyladenosine transferase [Dialister invisus DSM 15470]
 gi|260402971|gb|EEW96518.1| dimethyladenosine transferase [Dialister invisus DSM 15470]
          Length = 286

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 13/276 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +L  + I  K  +GQNFL+  +I+ +IA ++   +G  V+EIGAG G LTQ L   G
Sbjct: 12  VRYVLQRFGIRAKHRLGQNFLVRPDIVAEIAAAAELAEGAFVLEIGAGIGTLTQALAETG 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V   E D+    +L      + N + II +D LK + ++    ++     ANLPY I
Sbjct: 72  AN-VTTFEIDKSLENVLTHTLEAY-NNVHIIYEDVLKANLKEILGDNN-WHAAANLPYYI 128

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +L   I ++     +     + QKEV +RI A+  S  YG L++   +      + D
Sbjct: 129 TTPILLYLIQSELPISLF---VFMMQKEVADRILAKAGSKDYGALTLAVQFDCTVERVMD 185

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG-- 245
           I P  F P P VTSTV+       P       +   ++ +  FG+RRK    ++K  G  
Sbjct: 186 IPPAAFLPHPAVTSTVLKIRRRKEPAVKVADRKLFFRLVKMGFGQRRKVFTNAMKSGGIS 245

Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              G+ +L +AGI+   R E  S+E++  + N   +
Sbjct: 246 MELGKKILERAGIDGGRRGETFSMEEYAALANAWDE 281


>gi|262200033|ref|YP_003271242.1| dimethyladenosine transferase [Haliangium ochraceum DSM 14365]
 gi|262083380|gb|ACY19349.1| dimethyladenosine transferase [Haliangium ochraceum DSM 14365]
          Length = 295

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 128/283 (45%), Gaps = 14/283 (4%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           N      +T++  Y +  KK  GQNFL+     + I +++       VIE GAG G LT 
Sbjct: 6   NEAFPDPRTLMRKYGLGAKKSWGQNFLISERAYRAIVDAAVRGGDDWVIEFGAGLGTLTM 65

Query: 64  MLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
            L       KV+ +E+D++   +L+       N +EII+ +AL  D           + +
Sbjct: 66  RLAERVPDGKVLAVERDREMAEVLRGELGHLDN-VEIIEGNALTYDIAMVGRWYGERVSV 124

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
             NLPYNI ++++ + I A          T++ Q+E+ +R+ A   +  YG L VL G  
Sbjct: 125 CGNLPYNIASQIIMHIIDAREH---VARATVMIQREMADRLVAVPGTKAYGALGVLVGTF 181

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHF----IPHLNPIPCCLESLKKITQEAFGKRRKTL 237
              + +  +    F P+PKV+STV+        H+            +   AFG+RRK L
Sbjct: 182 ADVSTVIHVPASGFVPAPKVSSTVVRLDLLSDEHMRVQVSDFAHYADVVHGAFGQRRKKL 241

Query: 238 RQSLKRLGGENL----LHQAGIETNLRAENLSIEDFCRITNIL 276
           R +L      ++    L  A I+   R E L   +F R+ + L
Sbjct: 242 RNALGARWPMDVVDAGLSDADIDGGRRGETLDRVEFARLADHL 284


>gi|172037411|ref|YP_001803912.1| dimethyladenosine transferase [Cyanothece sp. ATCC 51142]
 gi|254807863|sp|B1WRJ7|RSMA_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|171698865|gb|ACB51846.1| rRNA dimethyladenosine transferase [Cyanothece sp. ATCC 51142]
          Length = 270

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 127/269 (47%), Gaps = 13/269 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L     L++I +++       ++EIG G G LT+ LL L  + +I +E D
Sbjct: 3   QPRKRFAQHWLRSETALEQIIQAANLKKSDRLLEIGPGTGILTRRLLPL-VQSLIAVELD 61

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLLF 135
                 L        N L ++Q D LK+D               +++AN+PYNI + +L 
Sbjct: 62  WDLCKKLVKSLGDEDNFL-LLQGDILKLDIATEAQQFPKFLPINKVVANIPYNITSPILD 120

Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             +   + P  P ++ + LL QKEV +RI A   S +YG LS+   +      + D+   
Sbjct: 121 KLLGRISSPKQPSYDLIVLLIQKEVAQRIIAYPGSKNYGALSIKMQYLADCNYICDVPKK 180

Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL--- 249
            F+P PKV S VI F P          + L+ +    F  RRK LR +L+ L   +L   
Sbjct: 181 SFYPPPKVDSAVITFRPRSLLNSATNPKYLETLINLGFSSRRKMLRNNLQSLIDRDLLTE 240

Query: 250 -LHQAGIETNLRAENLSIEDFCRITNILT 277
            L +  +   +RAENL +  +  ++N  +
Sbjct: 241 FLTEIDLNEQVRAENLDLNQWIALSNYFS 269


>gi|195503410|ref|XP_002098640.1| GE23825 [Drosophila yakuba]
 gi|194184741|gb|EDW98352.1| GE23825 [Drosophila yakuba]
          Length = 306

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 133/284 (46%), Gaps = 18/284 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   +    I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +
Sbjct: 8   KKSRIHNDVQKQGIVFNKDFGQHILKNPLVITSMLEKAALRATDVVLEIGPGTGNMTVPM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KVI  E D +    L+      P   +L+++  D LK +   FF++      IA
Sbjct: 68  LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  ER+ A+     Y RLS+ T    +
Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K 
Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237

Query: 244 LGGENLLHQA-GIETNLRAENLSIEDFCRITN---ILTDNQDIA 283
                +L +   +  +LR E   +ED  ++ N    + ++QD+A
Sbjct: 238 TSVLEMLEKNYKLYRSLRNE--PVEDDFKMQNKVIAILEDQDMA 279


>gi|256830231|ref|YP_003158959.1| dimethyladenosine transferase [Desulfomicrobium baculatum DSM 4028]
 gi|256579407|gb|ACU90543.1| dimethyladenosine transferase [Desulfomicrobium baculatum DSM 4028]
          Length = 280

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 128/268 (47%), Gaps = 12/268 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             PK+ +GQNFL D NI ++I  S     G  V+EIG G G LT++L       V+ +EK
Sbjct: 7   FAPKRSLGQNFLSDPNICRRIVASLELAPGDPVLEIGPGRGALTRILAGHDG-PVMALEK 65

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    +K         + ++  D L   +E    +   + +I NLPYN+ + +++  +
Sbjct: 66  DSELVSWIKAEFPA----VGVVHADGLDFCWEGTRRLPG-LSLIGNLPYNVASPMIWEMV 120

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           S       + S+  + QKEV  R+TA++ S  YG LS   G   +   +F + PHVF P 
Sbjct: 121 SRCR---SFRSMLFMVQKEVALRLTAKEGSRTYGALSAWVGNFVRGEYVFTVPPHVFRPQ 177

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQAGI 255
           PKV S ++ F+P  +P      +L    +  F +RRK L   LK    E       + G+
Sbjct: 178 PKVDSAIVRFLPRPDPAWEDAAALSWTVKILFQQRRKQLGTILKAHWSEAVETWCGELGV 237

Query: 256 ETNLRAENLSIEDFCRITNILTDNQDIA 283
           +  +R E LS +    +  +L    + A
Sbjct: 238 DRRVRPEELSPDALRSLARVLDPKNEAA 265


>gi|189346402|ref|YP_001942931.1| dimethyladenosine transferase [Chlorobium limicola DSM 245]
 gi|226729767|sp|B3EIC2|RSMA_CHLL2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189340549|gb|ACD89952.1| dimethyladenosine transferase [Chlorobium limicola DSM 245]
          Length = 263

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/259 (30%), Positives = 127/259 (49%), Gaps = 11/259 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H +I  KK +GQNFL D NI +KI   SG+     ++EIG G G LT+ ++ +      
Sbjct: 7   KHTEIAVKKQLGQNFLTDRNITRKIVRLSGAKPEENILEIGPGFGALTKEIIEVCP-SFT 65

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           V+EKD +    ++   +++P +L +I+ D LK+D E        +RI+ N+PY+I + +L
Sbjct: 66  VVEKDPKLAAFIR---TEYP-QLNVIEADFLKIDLEAVTGAR-KLRILGNIPYSITSPIL 120

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +        +   TL+ Q EV  RI A  ++  YG L+V        +  F +   V
Sbjct: 121 FRLLEYRRC---FMHATLMMQHEVAMRIVAVPSTKEYGILAVQLQAFFDVSYGFRVGRKV 177

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           F P P V S VI   P  +      E   +  + AF +RRKTL  +LK     + +    
Sbjct: 178 FKPQPGVDSAVITITPKEHVPLSDPEGFSRFVRCAFHQRRKTLLNNLKESYNLDAVPSEV 237

Query: 255 IETNLRAENLSIEDFCRIT 273
           +    RAE L+I++   + 
Sbjct: 238 L--KRRAEALAIQELFELF 254


>gi|148244651|ref|YP_001219345.1| dimethyladenosine transferase [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326478|dbj|BAF61621.1| dimethyladenosine transferase [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 254

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 90/256 (35%), Positives = 131/256 (51%), Gaps = 13/256 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL+D  I+ +I  +        ++EIG G G +T  LL     ++ VIE 
Sbjct: 6   HKARKRFGQNFLIDNRIIDRIIATISPKRNDNLLEIGPGQGAITIPLLNY-VNQLNVIEI 64

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     IL+ +   H   L I Q D LK D         PIRII NLPYNI + +LF+ I
Sbjct: 65  DLNLISILESLEYSH---LIIYQGDVLKFDLNIL---PMPIRIIGNLPYNISSSILFHLI 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    + +T++ QKEV ER+ A   S  YGRLSV+        M+F + P  F P 
Sbjct: 119 EN---LDKIQDITVMLQKEVVERMGANSGSKVYGRLSVMMQTFFNINMIFTVPPESFNPV 175

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           P+V S +++  P   P    ++  +K+ + AF +RRK LR SLK +  +    Q  I+ +
Sbjct: 176 PRVDSAIVYLKPLAQPKTKNIKVFEKVVKLAFSQRRKMLRNSLKYVLTQ---KQTDIDLS 232

Query: 259 LRAENLSIEDFCRITN 274
            RAE L+++DF  +T 
Sbjct: 233 RRAEMLTVDDFITLTQ 248


>gi|27151613|sp|Q9RED9|RSMA_BURSP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|6687038|emb|CAB64788.1| KsgA, high level kasugamycin resistance protein [Burkholderia sp.]
          Length = 277

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 118/268 (44%), Gaps = 11/268 (4%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVI 74
                +K  GQ+FL+D  ++  I  +        ++EIG G G LT  LL    GA ++ 
Sbjct: 9   QGHTARKRFGQHFLIDSAVIDAIVSAIAPAPQDCLVEIGPGLGALTWPLLERLGGAGRLH 68

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRL 133
            IE D+     L+ +       L +   DAL+ DF +      + +RI+ NLPYNI + L
Sbjct: 69  AIEMDRDLAAHLQRLGHAS---LILHAGDALRFDFAQLARAEQARLRIVGNLPYNISSPL 125

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF+ +              + Q+EV  RI A   S HYGRLSV+   R     +FD+ P 
Sbjct: 126 LFHLLDEMN---EVVDQHFMLQREVAARIAAAPGSAHYGRLSVMLQSRYAVERLFDVPPC 182

Query: 194 VFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P P V S V+   PH               + + AF +RRK LR +L          
Sbjct: 183 AFAPPPAVHSAVLRMAPHASRALPQLDWARFAALVRAAFSQRRKILRHTLSVYQKTPDFD 242

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
             G +   RA+ + + ++ ++   +  N
Sbjct: 243 ALGFDHGRRAQEVPVGEYLKLAQHIEQN 270


>gi|116070730|ref|ZP_01467999.1| 16S rRNA dimethylase [Synechococcus sp. BL107]
 gi|116066135|gb|EAU71892.1| 16S rRNA dimethylase [Synechococcus sp. BL107]
          Length = 274

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 123/274 (44%), Gaps = 13/274 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++L D  +L +I  ++       V+E+G G G LT+ LL   A ++  IE
Sbjct: 5   GHTARKRFGQHWLRDARVLDQIVSAARLQQDDRVLEVGPGRGALTERLLASAAAQIHAIE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L D      +R  + + D L        +     +++AN+PYNI   LL   
Sbjct: 65  LDRDLVQGLHDRFGA-QSRFSLREGDVLDAPLH-LGDGGFANKVVANIPYNITGPLLARL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           I     P  P ++ L LL QKEV ERI AQ     +  LSV        +++  + P  F
Sbjct: 123 IGRLDRPVEPTYDCLVLLLQKEVAERIRAQPGRSSFSALSVRMQLLADCSLVCPVPPRCF 182

Query: 196 FPSPKVTSTVIHFIPH--LNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S VI   P      +P  L   ++ + ++AF  RRK LR +L  +    +L  
Sbjct: 183 QPPPKVQSEVILLKPFPPERRLPIDLASRVEALLKQAFQARRKMLRNTLAGVIEPQILEP 242

Query: 253 A----GIETNLRAENLSIEDFCRITNILTDNQDI 282
                GI    R + ++ E +  +   L  NQD+
Sbjct: 243 LAASVGISLQQRPQEVAAEAWVALARGL--NQDV 274


>gi|73670681|ref|YP_306696.1| dimethyladenosine transferase [Methanosarcina barkeri str. Fusaro]
 gi|118600876|sp|Q466S6|RSMA_METBF RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|72397843|gb|AAZ72116.1| dimethyladenosine transferase [Methanosarcina barkeri str. Fusaro]
          Length = 287

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 83/278 (29%), Positives = 137/278 (49%), Gaps = 23/278 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++++L  Y I       Q+FL+D   L +I  ++       V+EIGAG GNLT+ L    
Sbjct: 12  VRSLLKKYNIKG-GTFDQHFLVDAGYLDRIVAAAELGPKDVVLEIGAGVGNLTERLAK-K 69

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            +KVI IE D     +L D   +  N +EII  DALKV+F +F       +I++NLPY+I
Sbjct: 70  VKKVIAIELDPVLVRVLHDRFDKVGN-IEIIAGDALKVEFPEF------DKIVSNLPYSI 122

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F  +        ++   L++Q E   R+ +Q N   Y RL+V T +   A+++  
Sbjct: 123 SSEITFKLLRHK-----FKLGILMYQYEFAARMVSQPNCKDYSRLTVDTCYFADASILMK 177

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQS-------L 241
           +    F P+P+V S VI  +P   P     ++         F +RRK LR +       L
Sbjct: 178 VPKSAFQPAPEVDSAVIKLVPRPVPFEVKDQAFFMNFVSAVFSQRRKKLRNAILNTNYLL 237

Query: 242 KRLGGENLLHQAGIE-TNLRAENLSIEDFCRITNILTD 278
           K    + ++ +   +  + RAENL+ E+  ++ N + D
Sbjct: 238 KIPNIKEVISRLPEDMMSKRAENLTPEELAQVANHIID 275


>gi|114609911|ref|XP_001143057.1| PREDICTED: transcription factor B1, mitochondrial isoform 1 [Pan
           troglodytes]
          Length = 288

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/274 (31%), Positives = 132/274 (48%), Gaps = 19/274 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+   ++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L     +++V+EKD +F P L+ +S   P +L I+  D L    EK F         +  
Sbjct: 74  LNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+   +            +TL FQKEV ER+ A   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  +      +F I    F P P+V   V+HF P + P I    + ++K+ Q  F
Sbjct: 194 SRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVF 253

Query: 231 GKRRKT----LRQSLKRLGGENLLHQAGIETNLR 260
             RRK     LR+ LKR   +N   +     N R
Sbjct: 254 QFRRKYCHRGLREELKRRKSKNEEKEEDDAENYR 287


>gi|23009722|ref|ZP_00050666.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 364

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 124/280 (44%), Gaps = 17/280 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF+ D   ++KI  ++    G  V+E+G G G+LT  LL
Sbjct: 62  PAEIRDLAGRLGVRPTKTLGQNFVHDGGTVRKIVRAADVRPGERVVEVGPGLGSLTLGLL 121

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V+ +E D      L D    H     +RLE++  DAL+V          P  ++
Sbjct: 122 EAGA-SVVAVEIDPVLARQLPDTVVTHVPDVGDRLEVVGADALEVTS---LPGEPPTALV 177

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L  ++         E + ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 178 ANLPYNVAVPVLLTFLER---FDSLERVLVMVQAEVADRLAAPPGSRTYGVPSVKAAWYA 234

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241
            A     I   VF+P P V S ++       P      E +  +   AF +RRK LR +L
Sbjct: 235 DARRAGTIGRSVFWPVPNVDSALVALDRREPPATAATREQVFAVVDAAFAQRRKMLRSAL 294

Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             L G       +L  A ++   R E L +  F R+   L
Sbjct: 295 SGLAGSASVAAEVLEAADVDPQARGEVLDVAAFARVAEQL 334


>gi|78212718|ref|YP_381497.1| dimethyladenosine transferase [Synechococcus sp. CC9605]
 gi|119365857|sp|Q3AKE0|RSMA_SYNSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78197177|gb|ABB34942.1| dimethyladenosine transferase [Synechococcus sp. CC9605]
          Length = 274

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 122/268 (45%), Gaps = 11/268 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++LLD ++L++I E++       V+E+G G G LT+ LL  G + V  IE
Sbjct: 5   GHHARKRFGQHWLLDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+D     P    + Q D L+   E   +     +++AN+PYNI   LL   
Sbjct: 65  LDRDLVQGLRDRFVVQPG-FSLHQGDVLEAPLE-LSDGRIADKVVANIPYNITGPLLERL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     P  P ++ L LL QKEV ERI A+     +  LSV      +   +  + P  F
Sbjct: 123 VGRLDRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLARCHSVCPVPPRCF 182

Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251
            P PKV S VI   P       +P     ++ + ++AF  RRK LR +L  +   N L  
Sbjct: 183 QPPPKVQSEVICLEPLPASERVMPDLAARVESLLKQAFLARRKMLRNTLAGVAEPNRLKD 242

Query: 252 ---QAGIETNLRAENLSIEDFCRITNIL 276
               AG     R + L+   +  +   L
Sbjct: 243 LAASAGFSLQQRPQELAPATWVALARGL 270


>gi|33865586|ref|NP_897145.1| dimethyladenosine transferase [Synechococcus sp. WH 8102]
 gi|62900567|sp|Q7U7D3|RSMA_SYNPX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33632755|emb|CAE07567.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. WH 8102]
          Length = 302

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 131/279 (46%), Gaps = 11/279 (3%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++      +K  GQ++L D  +L +I  ++       V+E+G G G LT+ LL+  A  V
Sbjct: 1   MAFQGHQARKRFGQHWLKDQTVLDRIVAAADLQPSDRVLEVGPGRGALTERLLSSPAAAV 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D+     L++  +  P R  + Q D L++   +  +  +  +++AN+PYNI   L
Sbjct: 61  QAVELDRDLVDGLRERFAGDP-RFSLRQGDVLELPL-QLEDGVAASKVVANIPYNITGPL 118

Query: 134 LFNWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           L   +     P  P ++ L LL QK+V ERI A+     +  LSV      + T +  + 
Sbjct: 119 LDRLVGRLDRPVEPPYQRLVLLVQKQVAERIRARPGHSSFSALSVRMQLLARCTTVCPVP 178

Query: 192 PHVFFPSPKVTSTVIHFIPHL--NPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGE- 247
           P  F P PKV S VI   P      +P  +   ++ + ++AF  RRK LR +L  L  E 
Sbjct: 179 PRCFQPPPKVQSEVIQIDPLPADKRLPSDIARRVESLLRQAFLARRKMLRNTLASLAPEP 238

Query: 248 ---NLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
               L   AG + + R + L+ + +  +   L    D A
Sbjct: 239 QLQALAAAAGFQLHQRPQELAPQVWVALARGLNQGIDAA 277


>gi|126657589|ref|ZP_01728744.1| dimethyladenosine transferase [Cyanothece sp. CCY0110]
 gi|126621045|gb|EAZ91759.1| dimethyladenosine transferase [Cyanothece sp. CCY0110]
          Length = 270

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 127/269 (47%), Gaps = 13/269 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            P+K   Q++L     L++I +++   +   ++EIG G G LT+ LL L  + +I +E D
Sbjct: 3   QPRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPL-VQSLIAVELD 61

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI----RIIANLPYNIGTRLLF 135
                 L        N L ++Q D LK+D               +++AN+PYNI + +L 
Sbjct: 62  WDLCKKLVKSLGNEDNFL-LLQGDILKLDIATEAEQFPKFLPINKVVANIPYNITSPILE 120

Query: 136 NWISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             +     P  P ++ + LL QKEV +RI A   S +YG LS+   +      + D+   
Sbjct: 121 KLLGNIASPENPPYDLIVLLIQKEVAQRIVASPGSKNYGALSIKMQYLADCNYICDVPKK 180

Query: 194 VFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL--- 249
            F+P PKV S VI F P          + L+ +    F  RRK LR +L+ L   +L   
Sbjct: 181 SFYPPPKVDSAVITFRPRPLLNSAINPKQLETLINLGFSSRRKMLRNNLQSLIDRDLLTK 240

Query: 250 -LHQAGIETNLRAENLSIEDFCRITNILT 277
            L +  +   +RAENL +  +  ++N  +
Sbjct: 241 FLTEIDLNEQVRAENLDLNQWIALSNHFS 269


>gi|225714284|gb|ACO12988.1| Probable dimethyladenosine transferase [Lepeophtheirus salmonis]
          Length = 312

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 123/263 (46%), Gaps = 17/263 (6%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
               ++    +GQ+ L +  ++  I E SG     TV+EIG G GNLT  LL    ++VI
Sbjct: 23  GRQGLVFNTTLGQHILKNPAVVDSIVEESGLRSTDTVLEIGPGTGNLTAKLLE-KVKRVI 81

Query: 75  VIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V E D +    L+       + ++L+II  DA+K D   FF++      +AN+PY I + 
Sbjct: 82  VCEVDPRMVAELQKHFQHSSYKSKLDIIVGDAIKTDLP-FFDVC-----VANVPYQISSP 135

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           L+F  +      PF+    L+FQ+E  +R+ A      Y RLS+ T   +    +  +  
Sbjct: 136 LVFKLL---LHRPFFRVAVLMFQREFAQRLIAPPGDKLYCRLSINTQLLSTVHHLLKVGK 192

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           + F P PKV S+V+   P   P P   +    +T+  F ++ KTL  +  +      L +
Sbjct: 193 NNFRPPPKVESSVVRIEPKNPPPPINFKEWDGLTRICFVRKNKTLGAAFSQTPVLLTLDK 252

Query: 253 A-----GIETNLRAENLSIEDFC 270
           +      ++  +  E  SI++  
Sbjct: 253 SYRTHMSLKEEMLPEEFSIKELI 275


>gi|256833167|ref|YP_003161894.1| dimethyladenosine transferase [Jonesia denitrificans DSM 20603]
 gi|256686698|gb|ACV09591.1| dimethyladenosine transferase [Jonesia denitrificans DSM 20603]
          Length = 600

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 132/291 (45%), Gaps = 18/291 (6%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+   +H ++ +     + P K  GQNFL D   ++KI   SG      V+E+G G G+L
Sbjct: 7   TLLGPAH-IRELAQECGVTPTKTKGQNFLHDAGTVRKIVRLSGVAPTDQVLEVGPGLGSL 65

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISS 117
           T  LL  G   V  IE D    P L     +       RL ++  +AL+V   +  +   
Sbjct: 66  TLGLLDAGCH-VTAIELDDVLAPHLAGTVERFQPGASQRLTVVHGNALEVT--ELPDPQ- 121

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P  ++ANLPYN+   +L   +      P    + ++ Q+EV +R+ A   S  YG  S  
Sbjct: 122 PTALVANLPYNVSVPILLTILER---FPTITRVMVMVQREVADRLVAPPGSRTYGTPSAK 178

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKT 236
             W   A     +  +VF+P+P V S +++    +          +  +   AF +RRKT
Sbjct: 179 LAWYGTANRAMKVGRNVFWPAPNVDSALVYLDRTMPVTTSASQRDVFAVIDAAFAQRRKT 238

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           LRQ+L  + G       +L  AG+    R E L+I DF RI   +T  + +
Sbjct: 239 LRQALAGIAGNSQRASTILEAAGVPPTARGEQLTIHDFARIAEAMTPKEPV 289


>gi|219682072|ref|YP_002468456.1| dimethyladenosine transferase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621805|gb|ACL29961.1| dimethyladenosine transferase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 273

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 20/284 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT N K H           +P K  GQNFL++ + +K I +        T++EIG G   
Sbjct: 1   MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 49

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119
           LT+ +  L   ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     I
Sbjct: 50  LTKPMCELL-EELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 106

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RI  NLPYNI T L+             + +  + QKEV ER+ +   +  YGRLS+++ 
Sbjct: 107 RIFGNLPYNISTSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQ 163

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237
           +     ++ ++SP  F P PKV S  I+  PH N       +  L  IT++AF  RRK L
Sbjct: 164 YYCDIKILLNVSPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKIL 223

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           R SLK L  E  L +  I +NLRAEN+S+  +C++ N L    +
Sbjct: 224 RHSLKNLFSEKELIKLEINSNLRAENISVSQYCKLANYLYKKSN 267


>gi|237785136|ref|YP_002905841.1| dimethyladenosine transferase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758048|gb|ACR17298.1| dimethyladenosine transferase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 309

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 18/283 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     ++P K  GQNF++D N +++I  ++       V+E+G        + L
Sbjct: 23  PKEIRDLARTVGVVPTKKRGQNFVVDPNTVRRIVATADLSPDDHVLEVGP-GLGSLTLGL 81

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVD--FEKFFNISSPIR 120
                KV  +E D      L    +++       L++I  DAL +     K    + P  
Sbjct: 82  LDVVSKVTAVEIDTTLAEQLPHTVAEYAATRAENLDVICADALALTGSVAKDLGTNPPTA 141

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
            +ANLPYN+   +L + +      P    + ++ Q EV +R+ A+  +  YG  SV   +
Sbjct: 142 FVANLPYNVAVPILLHVLE---IFPTITRVLVMVQAEVADRLAAEPGNRVYGVPSVKARF 198

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC---LESLKKITQEAFGKRRKTL 237
             +   +  I  +VF+P+P V S ++       P P        L  I   AF +RRKTL
Sbjct: 199 YGQVQRVGAIGKNVFWPAPNVDSGLVKLTRGTRPWPTDSAARSQLWPIIDAAFAQRRKTL 258

Query: 238 RQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           R +LK   G     EN L +AGI+   R E LSI++F  +  +
Sbjct: 259 RAALKGHYGNAAAAENALREAGIDPQRRGETLSIDEFISLAQL 301


>gi|118600894|sp|Q4UMV1|RSMA_RICFE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
          Length = 239

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 7/240 (2%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S+    + ++I P K  GQNF+ D ++  KI  +S   +   V+EIG G G LT+ +L 
Sbjct: 3   PSIAKHAASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQ 62

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                + VIE D++  P+L +I   +PN L II+ DALK++          + II+NLPY
Sbjct: 63  KNPASLTVIETDERCIPLLNEIKEYYPN-LNIIKQDALKINLTDL--GYDKVTIISNLPY 119

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +IGT L+  W+          ++TL+ QKEV ERI A  ++  YGRLSV+    TK    
Sbjct: 120 HIGTELVIRWLKEAR---LITNMTLMLQKEVVERICAMPSTKAYGRLSVICQLITKVEKC 176

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGG 246
           FD++P  F+P PKV S ++  IP  NP    L   +++IT+ AF  RRK ++ SLK L  
Sbjct: 177 FDVAPTAFYPPPKVYSAIVKLIPLENPPSIALINKVEQITKLAFAGRRKMIKSSLKNLVP 236


>gi|115757168|ref|XP_779962.2| PREDICTED: similar to putative dimethyladenosine transferase
           [Strongylocentrotus purpuratus]
          Length = 292

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 40/286 (13%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
             I+    +GQ+ L +  +++ I   +      TV+E+G G GN+T  +L   A+KV+  
Sbjct: 5   LGILFNTGIGQHILKNPLVIESIISKAALRSTDTVLEVGPGTGNMTVKMLD-KAKKVVAC 63

Query: 77  EKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           E D +    L+      P   +L++I  D LK D   FF++      +ANLPY I +  +
Sbjct: 64  ELDPRLVAELQKRVQGTPFAPKLQVIVGDVLKTDLP-FFDVC-----VANLPYQISSPFV 117

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +      PF+    L+FQ+E  +R+ A+     Y RLS+ T    +   +  +  + 
Sbjct: 118 FKLL---LHRPFFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNN 174

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA- 253
           F P PKV S+V+   P   P P   +    + + AF ++ KTL  + +  G   +L +  
Sbjct: 175 FKPPPKVESSVVRIEPRNPPPPINFQEWDGLVRIAFVRKNKTLSAAFRNKGVVEMLEKNY 234

Query: 254 -------------GIE--------------TNLRAENLSIEDFCRI 272
                         ++                 RA  + I+DF ++
Sbjct: 235 RVHCSVKNIAIPDNLDMKEKVVSVLEKIEFEGKRARTMDIDDFLKL 280


>gi|225717294|gb|ACO14493.1| Probable dimethyladenosine transferase [Esox lucius]
          Length = 306

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 12/241 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           + +  ++    +GQ+ L +  ++  I E +       V+E+G G GN+T  LL   A+KV
Sbjct: 16  VKNQGVMFNTGLGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKV 74

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +    D +    L+      P   +L+I+  D LK +   FF++      +ANLPY I +
Sbjct: 75  VACGLDGRLVAELQKRVQCTPMQAKLQILVGDVLKTELP-FFDVC-----VANLPYQISS 128

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             +F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  + 
Sbjct: 129 PFVFKLL---LHRPFFRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 185

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P   P P   +    + + AF ++ KTL    K    E LL 
Sbjct: 186 KNNFRPPPKVESSVVRIEPKNPPPPVNFQEWDGLVRIAFVRKNKTLNAGFKSTAVEQLLE 245

Query: 252 Q 252
           +
Sbjct: 246 K 246


>gi|291238518|ref|XP_002739171.1| PREDICTED: tfb1m protein-like [Saccoglossus kowalevskii]
          Length = 259

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 15/249 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++  I+  Y +  +K + QNFLLD+N+  KI   +GSL+G  V E+G GPG +T+ +
Sbjct: 8   PLPTIGDIIRMYGLRAEKQLSQNFLLDMNLTDKIVRHAGSLNGRYVCEVGPGPGGITRSI 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  GA+KVIVIEKDQ+F P L+ ++     RL +I  D +K +    F         +  
Sbjct: 68  LHSGAKKVIVIEKDQRFMPSLELLAEASDGRLGLIHGDVMKYNMRNMFPNDLRKAWEDDP 127

Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+ A       +      +TL FQKEV ER+ A    P  
Sbjct: 128 PDVHIIGNLPFSVSTPLIIRWMEAISSHSGPFSYGRVQMTLTFQKEVAERLVAGVGDPQR 187

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS+++    K    F I    F P P V   V+HF P ++P I    + ++K+ +  F
Sbjct: 188 SRLSIMSQHLCKVKHAFTIPGTAFVPKPDVDVGVVHFTPLIDPLIQQPFKLVEKVVRCLF 247

Query: 231 GKRRKTLRQ 239
             RRK  ++
Sbjct: 248 QFRRKYCKR 256


>gi|303279442|ref|XP_003059014.1| hypothetical protein MICPUCDRAFT_58407 [Micromonas pusilla
           CCMP1545]
 gi|226460174|gb|EEH57469.1| hypothetical protein MICPUCDRAFT_58407 [Micromonas pusilla
           CCMP1545]
          Length = 380

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 78/240 (32%), Positives = 108/240 (45%), Gaps = 12/240 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
            ++  I   K  GQ+ L +  I+  I E  G      V+EIG G GNLT  LL   A+KV
Sbjct: 23  AAYQGIQFLKSYGQHILKNPMIVNAIVEKGGVKSTDVVLEIGPGTGNLTMRLLET-AKKV 81

Query: 74  IVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I IE D +    L+   S  P+   L+II  D LKVD   F         IAN PY I +
Sbjct: 82  IAIEFDPRMVVELERRVSGTPHGHNLKIISGDFLKVDLPYF------DVCIANCPYQISS 135

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L+F  +S     P + S TL+FQ+E   R+      P Y RLSV      + T +  + 
Sbjct: 136 PLVFKLLSHR---PMFRSATLMFQREFAMRLCVNPGDPLYCRLSVNAQLLARTTHILKVG 192

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P    I         + +  FG++ KTL    +      L+ 
Sbjct: 193 KNNFRPPPKVDSSVVRIEPRSPMIDVNFREWDGLVRLCFGRKNKTLGGIFRAKTVLQLIE 252


>gi|116754303|ref|YP_843421.1| dimethyladenosine transferase [Methanosaeta thermophila PT]
 gi|116665754|gb|ABK14781.1| dimethyladenosine transferase [Methanosaeta thermophila PT]
          Length = 249

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 132/259 (50%), Gaps = 20/259 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+FL D  I ++IA  +       ++EIG G G+LT+ L    A +V  IE D +    
Sbjct: 4   GQHFLTDRGIAERIAGYAEISPSDRILEIGPGKGSLTEFLAAR-AGRVYAIEADPELARY 62

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           +++        +E+IQ DAL+VD  ++       ++++NLPY+I T++    +       
Sbjct: 63  VEESFP----NVEVIQGDALRVDLPEY------NKVVSNLPYHISTKITLRLLRNP---- 108

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            ++ + L++Q+E  ER+ A   S  YGRLSV   +     ++  +    F P P V+S+V
Sbjct: 109 -FDLMVLMYQREFVERMLASPGSREYGRLSVNVSYYADVEVLETVPRSAFRPMPHVSSSV 167

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN---LRAE 262
           +   P  +           I+++ F KRRK ++ +L  +G  + +    ++ +    R E
Sbjct: 168 VRLRPRRDRELVDELIFSSISRDLFTKRRKKVKNALASIGVADDV-MLDLDPSILDARPE 226

Query: 263 NLSIEDFCRITNILTDNQD 281
           +L +++F +I  ++++++ 
Sbjct: 227 DLGVDEFVQIARVVSEHRS 245


>gi|163846476|ref|YP_001634520.1| dimethyladenosine transferase [Chloroflexus aurantiacus J-10-fl]
 gi|222524255|ref|YP_002568726.1| dimethyladenosine transferase [Chloroflexus sp. Y-400-fl]
 gi|163667765|gb|ABY34131.1| dimethyladenosine transferase [Chloroflexus aurantiacus J-10-fl]
 gi|222448134|gb|ACM52400.1| dimethyladenosine transferase [Chloroflexus sp. Y-400-fl]
          Length = 290

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 130/295 (44%), Gaps = 23/295 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++  L    + P + MGQNFLLD  +L  I + +       V+E+G G G 
Sbjct: 1   MNPYLNPQRIRAALRALNLRPTRGMGQNFLLDGQVLATIVDEAKLNASDAVVEVGPGLGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISS 117
           LT  L+   A +VI +E D++    L        + L +IQ D LKV           + 
Sbjct: 61  LTWELVQR-AGRVICVELDRRLADRLAAEFRD-QSHLYLIQGDVLKVAPSDLLARAAATP 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P +++AN+PY I   LL +++ A T P       LL Q EV ERI A      Y  L+  
Sbjct: 119 PYKLVANIPYAITAPLLRHFLEATTPPDL---SILLVQWEVAERICAGPG--DYSVLAHA 173

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRK 235
                + T++  +    FFP+P V S ++  +          +  +L ++ +  F   RK
Sbjct: 174 VQLYAEPTIVARVPAASFFPAPAVDSAILRLVRRPQLAVAVDDVNALFRLIKAGFLHARK 233

Query: 236 TLRQSL-----------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            L  +L            R      LH AGI+   RAE +++ ++ ++  +L+++
Sbjct: 234 QLGNALPGGLAALGVTVSREHVVQALHAAGIDPQRRAETVTLAEWAKLLAVLSES 288


>gi|257471197|ref|ZP_05635196.1| dimethyladenosine transferase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
          Length = 308

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 20/284 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT N K H           +P K  GQNFL++ + +K I +        T++EIG G   
Sbjct: 36  MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 84

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119
           LT+ +  L   ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     I
Sbjct: 85  LTKPMCELL-EELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 141

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RI  NLPYNI T L+             + +  + QKEV ER+ +   +  YGRLS+++ 
Sbjct: 142 RIFGNLPYNISTSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQ 198

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237
           +     ++ ++SP  F P PKV S  I+  PH N       +  L  IT++AF  RRK L
Sbjct: 199 YYCDIKILLNVSPEDFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKIL 258

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           R SLK L  E  L +  I +NLRAEN+S+  +C++ N L    +
Sbjct: 259 RHSLKNLFSEKELIKLEINSNLRAENVSVSQYCKLANYLYKKSN 302


>gi|227504167|ref|ZP_03934216.1| dimethyladenosine transferase [Corynebacterium striatum ATCC 6940]
 gi|227199211|gb|EEI79259.1| dimethyladenosine transferase [Corynebacterium striatum ATCC 6940]
          Length = 284

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 20/278 (7%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     + P K +GQNFL D N +++I  ++       V+E+G        + L  
Sbjct: 11  EIRQLAEKLDVTPTKKLGQNFLHDPNTIRRIVAAADLQRDDRVVEVGP-GLGSLTLGLLE 69

Query: 69  GARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
               + V+E D +    L     + + +    L +I+ DAL++   +      P  ++AN
Sbjct: 70  AVDDLTVVEIDPRLAAQLPDTIAERAPEQAGNLRLIEKDALRIAPGEL---GEPTALVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +      P    + ++ Q EV ER+ A+  +  YG  SV   +    
Sbjct: 127 LPYNVAVPVLLHLLE---LYPTIRRVLVMVQLEVAERLAAKPGNKVYGVPSVKASFYGTV 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL---ESLKKITQEAFGKRRKTLRQS 240
                I  +VF+P+P + S ++      + P P      +++  +   AF +RRKTLR +
Sbjct: 184 RQAGTIGKNVFWPAPNIESGLVRIDCFQDAPWPIDDATRKAVFPLVDAAFAQRRKTLRAA 243

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           L    G     E  L  AGI+  LR E L++EDF R+ 
Sbjct: 244 LSGHFGGGPAAEEALVAAGIDPRLRGEKLAVEDFVRLA 281


>gi|168033422|ref|XP_001769214.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679479|gb|EDQ65926.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 302

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 12/238 (5%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
             I  +K  GQ+ L +  +++ I + +G      V+EIG G GNLT  LL +  +KV+ +
Sbjct: 17  QGIQFQKSKGQHILKNPLLVQSIVQKAGLKSTDIVLEIGPGTGNLTMKLLEVC-KKVVAV 75

Query: 77  EKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           E D +    +       P  N+L++IQ D LK +   F         +AN+PY I + + 
Sbjct: 76  ELDPRMVLEVTRRVQGTPYANKLQVIQGDILKTELPYF------DVCVANVPYQISSPIT 129

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +S     P +    ++FQKE  +R+ AQ     + RLSV T    +   +  +  + 
Sbjct: 130 FKLLSHR---PLFRCAVIMFQKEFAQRLVAQPGDSLFCRLSVNTQLLARVFHLLKVGKNN 186

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           F P PKV S+V+   P     P   +    + +  F ++ KTL    ++     L+ +
Sbjct: 187 FRPPPKVDSSVVRIEPRNPLPPINFKEWDGLIRLCFNRKNKTLGSIFRQKAVLALIEK 244


>gi|242015107|ref|XP_002428215.1| dimethyladenosine transferase, putative [Pediculus humanus
           corporis]
 gi|212512776|gb|EEB15477.1| dimethyladenosine transferase, putative [Pediculus humanus
           corporis]
          Length = 306

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 120/256 (46%), Gaps = 14/256 (5%)

Query: 1   MTMNNKSHSLKTI--LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           M    K    K +  +    ++ KK  GQ+ L +  +++ + E +       V+EIG G 
Sbjct: 1   MGKIKKPKPTKELKGVIKQGMLFKKSAGQHILKNPLVIQNMVEKAALKSTDIVLEIGPGT 60

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNIS 116
           GN+T  LL   A+KVI  E D +    L+       + ++LEII  D LK +   F    
Sbjct: 61  GNMTVKLLD-KAKKVIACEVDVRMVAELQKRVQCTPYQSKLEIIVGDVLKSELPFF---- 115

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
                +AN+PY I + L+F  +      PF+    L+FQKE   R+ A+     Y RLS+
Sbjct: 116 --NACVANIPYQISSPLVFKLL---LHRPFFRCAILMFQKEFAHRLVAKPGDKLYCRLSI 170

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
            T    +  ++  ++ + F P PKV S+V+   P   P P   +    +T+ AF ++ KT
Sbjct: 171 NTQLLARVDIVMKVAKNNFRPPPKVESSVVRIEPRNPPPPIQFKEWDGLTRIAFLRKNKT 230

Query: 237 LRQSLKRLGGENLLHQ 252
           L  + ++     +L +
Sbjct: 231 LGAAFRQTSVLAVLEK 246


>gi|307107026|gb|EFN55270.1| hypothetical protein CHLNCDRAFT_23464 [Chlorella variabilis]
          Length = 312

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 109/237 (45%), Gaps = 12/237 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I   K  GQ+ L +  +++ I + +G      V+EIG G GNLT  LL   A+KVI +E
Sbjct: 26  GIEFHKSKGQHILKNPLVVQSIVDKAGIKSTDVVLEIGPGTGNLTMKLLER-AKKVIAVE 84

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  N+L+II  D +KV    F         +AN+PY I + L F
Sbjct: 85  LDPRMVLELTRRVQGTPYQNQLQIIHGDVMKVQLPYF------DICVANIPYQISSPLTF 138

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             ++     P + +  +++Q E   R+ A+   P Y RL+V T    +   +  +  + F
Sbjct: 139 KLLAHR---PCFRAAVIMYQHEFAMRLVAKPGDPAYSRLAVNTQLLARVNHLLKVGRNNF 195

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S+V+   P     P  L     + +  FG++ KTL    ++     LL Q
Sbjct: 196 RPPPKVDSSVVRIEPRNPAPPVNLLEWDGLVRLCFGRKNKTLGAIFRQGNTLALLEQ 252


>gi|219681516|ref|YP_002467901.1| dimethyladenosine transferase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219624359|gb|ACL30514.1| dimethyladenosine transferase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 273

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 20/284 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT N K H           +P K  GQNFL++ + +K I +        T++EIG G   
Sbjct: 1   MTKNFKKH-----------LPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAA 49

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-I 119
           LT+ +  L   ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     I
Sbjct: 50  LTKPMCELL-EELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLI 106

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           RI  NLPYNI T L+             + +  + QKEV ER+ +   +  YGRLS+++ 
Sbjct: 107 RIFGNLPYNISTSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQ 163

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTL 237
           +     ++ ++SP  F P PKV S  I+  PH N       +  L  IT++AF  RRK L
Sbjct: 164 YYCDIKILLNVSPEDFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKIL 223

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           R SLK L  E  L +  I +NLRAEN+S+  +C++ N L    +
Sbjct: 224 RHSLKNLFSEKELIKLEINSNLRAENVSVSQYCKLANYLYKKSN 267


>gi|242247433|ref|NP_001156188.1| dimethyladenosine transferase-like [Acyrthosiphon pisum]
 gi|239790841|dbj|BAH71955.1| ACYPI005364 [Acyrthosiphon pisum]
          Length = 303

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 12/240 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
               I+ KK  GQ+ L +  I++ + E S  L   TV+EIG G GNLT  LL    + VI
Sbjct: 14  GRQGIMFKKDFGQHILKNPLIIQGMVEKSALLPTDTVLEIGPGTGNLTVKLLER-VKTVI 72

Query: 75  VIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
             E D +    LK     + + N+L+I   D LK +   FFN+     ++AN+PY I + 
Sbjct: 73  ACEIDVRLVAELKKRVMNTPYQNKLQIRVGDVLKSELP-FFNV-----LVANIPYQISSP 126

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           L+F  +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +  ++  +  
Sbjct: 127 LVFKLL---LHRPFFRCAVLMFQREFAYRLVAKPGDKLYCRLSINTQLLARVDLIMKVGK 183

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           + F P PKV S V+   P   P P        +T+ AF ++ KTL    K+      L +
Sbjct: 184 NNFRPPPKVESNVVRIEPRNPPPPINFNEWDGLTRIAFSRKNKTLGAIFKQNAVAVTLEK 243


>gi|308807535|ref|XP_003081078.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri]
 gi|116059540|emb|CAL55247.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri]
          Length = 363

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/276 (27%), Positives = 131/276 (47%), Gaps = 19/276 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              ++++GQ+FL+D +++    E++   +G  V+EIG G GNLT  LL+ GA  V+ +EK
Sbjct: 82  HEARRWLGQHFLIDASVVTDAVEAARLNEGDRVLEIGPGTGNLTCELLSRGAN-VLAVEK 140

Query: 79  DQQFFPILKD-ISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLPYNIGTR 132
           D+     L+  +  +H   L +++ D LK D     F +        +++AN+PYNI T 
Sbjct: 141 DRNLAEKLRKGLCVEHGEALRLVEGDFLKWDGLAAAFARTSPEQPRAKVVANIPYNITTD 200

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +L   +        +E +  +FQ+EV +R+         Y  +SV   + +K   +  + 
Sbjct: 201 VLKVLL---PMGDVFEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYSKPYYIRFVP 257

Query: 192 PHVFFPSPKVTSTVIHFIPHLN----PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           P  F P P V S +I F P       P+           Q  F ++RK LR +LK +  E
Sbjct: 258 PTCFMPPPNVDSCLIGFKPKEPHELLPLNGTENQFFTFVQACFAQKRKMLRNNLKAVCEE 317

Query: 248 N----LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           N              +R + L++E++ R+ N + + 
Sbjct: 318 NTMEGAFAMLDRGDKIRPQELTMEEYVRLFNFVRER 353


>gi|254431695|ref|ZP_05045398.1| dimethyladenosine transferase [Cyanobium sp. PCC 7001]
 gi|197626148|gb|EDY38707.1| dimethyladenosine transferase [Cyanobium sp. PCC 7001]
          Length = 300

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 118/264 (44%), Gaps = 16/264 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQ++L D  +L +I  ++    G  V+EIG G G LTQ LL   A  V  +E 
Sbjct: 26  HRARKRFGQHWLTDAAVLDRIVAAAALAPGERVLEIGPGRGALTQRLLASDAAAVAAVEL 85

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L+    +   R E+ Q DAL +       +    +++AN+PYNI   LL   +
Sbjct: 86  DRDLVAGLQQRFGR-DARFELHQGDALTL------ALPPADKVVANIPYNITGPLLERLV 138

Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                P  P +  L LL Q+EV ERI     S  Y  LSV      +   +  + P  F 
Sbjct: 139 GRLDHPVQPPYRRLVLLLQREVAERIRCSPGSASYSALSVRMQLLGECRSVCAVPPRCFQ 198

Query: 197 PSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL--- 250
           P PKV S VI   PH     P      + +++ + +F  RRK LR SL  L  E  L   
Sbjct: 199 PPPKVQSEVIVIEPHGPARLPEAALARTTEQLLRRSFAARRKMLRNSLVGLVPEPELQGL 258

Query: 251 -HQAGIETNLRAENLSIEDFCRIT 273
             +AGI    R + +    + R+ 
Sbjct: 259 AREAGINLQQRPQEIEPAAWLRLA 282


>gi|307211915|gb|EFN87842.1| Probable dimethyladenosine transferase [Harpegnathos saltator]
          Length = 306

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 40/293 (13%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++   I+  K  GQ+ L +  I++ + E +       ++E+G G GN+T  LL   A+KV
Sbjct: 16  VARQGILFNKDFGQHILKNPLIIQNMVEKAALRPTDVILEVGPGTGNMTIKLLE-KAKKV 74

Query: 74  IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I  E D +    L+       +  +LEI+  D LK D   FF++      +AN+PY I +
Sbjct: 75  IAYEVDPRLVAELQKRVQGTLYQPKLEIMVGDVLKSDLP-FFDLC-----VANIPYQISS 128

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L+F  +      P +    L+FQ+E  ER+ A+     Y RLS+ T    +  M+  + 
Sbjct: 129 PLVFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVG 185

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S V+   P     P   +    +T+ AF ++ KTL  + K+     +L 
Sbjct: 186 KNNFKPPPKVESNVVRIEPRNPSPPINYQEWDSLTRIAFLRKNKTLSAAFKQNTVTTMLE 245

Query: 252 QA--------------GIE--------------TNLRAENLSIEDFCRITNIL 276
           +                 +               N RA  + I DF ++ +  
Sbjct: 246 KNYKIHCSLNNKVFPDNFDIKQLADHILKKTKAENKRARTMDIPDFIKLLHAF 298


>gi|237737101|ref|ZP_04567582.1| dimethyladenosine transferase [Fusobacterium mortiferum ATCC 9817]
 gi|229420963|gb|EEO36010.1| dimethyladenosine transferase [Fusobacterium mortiferum ATCC 9817]
          Length = 264

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 128/270 (47%), Gaps = 17/270 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL D   +L+KI E S      TV+EIG G G LT +LL   A+KV+ +E
Sbjct: 3   FKHKKKFGQNFLTDQREVLRKIMEVSNVQAEDTVLEIGPGEGALTALLLDT-AKKVVTVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+    IL+     +P +  ++ +D L+ D   +       +++AN+PY I + ++   
Sbjct: 62  IDRDLEKILRKKFDGNP-KYTLVMNDVLETDLRAYVGAG--TKVVANIPYYITSPIINKL 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         + + ++ QKEV ER+ A+K       L++   +  +A  +F I    F P
Sbjct: 119 IENRD---VIDEIYIMVQKEVAERVCAKKG-KERSVLTLAVEYYGEAEYLFTIPKEFFTP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----L 249
            PKV S  +    + +         ++  K  +  F  +RK L  +   LG        +
Sbjct: 175 IPKVDSAFMSIKLYKDNRYINQVDEDTFFKYVKAGFSNKRKNLLNNFSTLGYSKDELRVI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L +A I    RAENLSIEDF R+ +I  + 
Sbjct: 235 LAKAEIPETERAENLSIEDFIRLISIFENK 264


>gi|268560678|ref|XP_002646265.1| Hypothetical protein CBG11970 [Caenorhabditis briggsae]
          Length = 358

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 145/303 (47%), Gaps = 28/303 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +L+  +  Y++  KK + QN+L+D+NI +KIA+ +   +   VIEIG+GPG +T+ +
Sbjct: 5   PLPALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGI 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           L  GA ++ V+E D +F P L+ ++    +R+ I   DAL+ +    +            
Sbjct: 65  LEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPW 124

Query: 117 -----SPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITAQK 166
                  + +I NLP+NI + L+  ++   ++           LTL FQ EV +R+ +  
Sbjct: 125 HDSKLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPI 184

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKI 225
                 R+S++  +  +  ++F IS   F P P+V   V+ F+P   P+     E L+K+
Sbjct: 185 ACDTRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKL 244

Query: 226 TQEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            ++ F  R+K + + LK L          + LL +  I+    +  L +E F  +     
Sbjct: 245 CRQVFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFADLAEGYN 304

Query: 278 DNQ 280
           +  
Sbjct: 305 EQC 307


>gi|51246027|ref|YP_065911.1| dimethyladenosine transferase [Desulfotalea psychrophila LSv54]
 gi|62900516|sp|Q6AL71|RSMA_DESPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|50877064|emb|CAG36904.1| related to dimethyladenosine transferase [Desulfotalea psychrophila
           LSv54]
          Length = 295

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 129/290 (44%), Gaps = 23/290 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            +T L  +K+ PKK  GQNFL+     + I  +    +   + EIG G G LT  +    
Sbjct: 7   TRTDLKKHKLAPKKRFGQNFLVHKQTAEAIVRAGEVGEDDIITEIGVGLGALTVPMAHQ- 65

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYN 128
           A+ V  IE D       ++     P+ + +I  D LKV F          ++I+ANLPY+
Sbjct: 66  AKHVYGIEIDNGIIKYHEE-EQDLPDNVTLIHQDVLKVGFGDLAEKCGGKLKILANLPYS 124

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I   L+F  I      P   + T++ Q+EV +R+ A+  +  YG  ++L G         
Sbjct: 125 ISHPLIFKLIEHRDIIP---TATIMLQEEVADRLLAKPGTKEYGIPTILLGCCASIKKKM 181

Query: 189 DISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---- 242
            + P  F P PK+ S VI   F           E L ++ + AF +RRKT+  +L     
Sbjct: 182 VLKPAEFHPRPKIDSAVITVDFTKPPELPEYNKELLSRVVRSAFSQRRKTILNTLSSASF 241

Query: 243 -----------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
                      +   E  + +AG   +LR E LSI+DF R+T +     +
Sbjct: 242 FFAEKENKAKNKAMTEKTIEKAGFAVSLRPEVLSIQDFVRLTTVFEQEMN 291


>gi|330814914|ref|XP_003291474.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum]
 gi|325078362|gb|EGC32018.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum]
          Length = 489

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 146/294 (49%), Gaps = 29/294 (9%)

Query: 3   MNNKSH---SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M+NK     +L+ I+  + +  K+ + QNFL+D NI  KI ++SG     TVIE+GAGPG
Sbjct: 1   MSNKLPPMPTLQEIIRTFGLSAKQQLSQNFLIDKNITDKICKTSGGFKDCTVIEVGAGPG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------- 112
            LT+ LLT  A+KVI +E D +F+P LK +      R+++I  + L+VD  K        
Sbjct: 61  GLTRSLLTSEAKKVIAVEMDPRFYPALKMLEDASEGRMKLIMANMLEVDEAKILFENGAE 120

Query: 113 ---FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
              +   S ++II NLP+N+GT L+  WI   +      S                  + 
Sbjct: 121 FAPWEEKSKVKIIGNLPFNVGTHLMLKWIRQISPREGLYSF-----------GRVPIGTA 169

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKI 225
            Y RLSV+        + + +    F P PKV + V+   P +NP+        +  + +
Sbjct: 170 DYSRLSVMVQQSAIPRITYQLPGKAFVPPPKVDAAVVEIEPRINPLGKEPLKNHQYFEFV 229

Query: 226 TQEAFGKRRKTLRQSLKRLG-GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
            +E F  RRKT+   +K LG G + L +  I+   R +N+S++ F  +TN   D
Sbjct: 230 CRELFAHRRKTVSNVIKNLGNGADALLEGIIDPKTRPQNISVDQFVDLTNRYCD 283


>gi|261749284|ref|YP_003256969.1| dimethyladenosine transferase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497376|gb|ACX83826.1| dimethyladenosine transferase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 257

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 91/262 (34%), Positives = 136/262 (51%), Gaps = 10/262 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
              K   Q FL D NI KKI ++    +  TV+EIG G G LT+ LLT    KV +IE D
Sbjct: 5   FFHKKFDQYFLKDKNIAKKIVKNLSFQNYNTVVEIGPGLGILTRYLLT-PWHKVFLIEID 63

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           ++    L+   S   N  +II  D LK + E+         II N PY I +++LF+ + 
Sbjct: 64  KKLILFLRKNFSVSKN--QIIHKDFLKWNPEEMNL--KNFAIIGNFPYRISSQILFHILR 119

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            + + P       +FQKEV ERIT+ + +  YG LSVL     +   +F ++ HVFFP P
Sbjct: 120 YNQYIP---ECIGMFQKEVAERITSHEGNKTYGILSVLVQTFYEVKYLFTVNKHVFFPIP 176

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-TN 258
            V S VI        I C  + L +  + AF +RRKTL+ +L +   + + +   +   N
Sbjct: 177 NVKSAVISLKRKERKIFCNKDLLFQCVKIAFNQRRKTLKNAL-QYFIKEIPNYYNLPFLN 235

Query: 259 LRAENLSIEDFCRITNILTDNQ 280
            RAE LS++DF ++T  + + +
Sbjct: 236 KRAEQLSVKDFLQLTKEIENRK 257


>gi|309371329|emb|CBX33010.1| hypothetical protein CBG_11971 [Caenorhabditis briggsae AF16]
          Length = 361

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 145/303 (47%), Gaps = 28/303 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +L+  +  Y++  KK + QN+L+D+NI +KIA+ +   +   VIEIG+GPG +T+ +
Sbjct: 7   PLPALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGI 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           L  GA ++ V+E D +F P L+ ++    +R+ I   DAL+ +    +            
Sbjct: 67  LEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPW 126

Query: 117 -----SPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITAQK 166
                  + +I NLP+NI + L+  ++   ++           LTL FQ EV +R+ +  
Sbjct: 127 HDSKLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPI 186

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKI 225
                 R+S++  +  +  ++F IS   F P P+V   V+ F+P   P+     E L+K+
Sbjct: 187 ACDTRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKL 246

Query: 226 TQEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            ++ F  R+K + + LK L          + LL +  I+    +  L +E F  +     
Sbjct: 247 CRQVFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFADLAEGYN 306

Query: 278 DNQ 280
           +  
Sbjct: 307 EQC 309


>gi|87302768|ref|ZP_01085579.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. WH 5701]
 gi|87282651|gb|EAQ74609.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
           sp. WH 5701]
          Length = 286

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 123/268 (45%), Gaps = 16/268 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++L D  +L++I  ++    G  V+E+G G G LT+ LL     ++  IE
Sbjct: 5   GHHTRKRFGQHWLTDAAVLERIVAAAELQPGERVLEVGPGRGALTERLLATALGELHAIE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   +    R ++++ D L++      N+    +++AN+PYNI   LL   
Sbjct: 65  LDRDLVAGLRQHFAG-DERFQLLEGDVLRL------NLPPADKVVANIPYNITGPLLERL 117

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     P    +  L LL Q+EVGERI A   S  +  LSV          +  + P  F
Sbjct: 118 VGRLDRPLASPYRRLVLLVQQEVGERIRAVAGSSAFSALSVRLQLLAHCRSVCAVPPRCF 177

Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL-- 250
            PSPKV S VI   P        P     L+ + +  F  RRK LR SL  L  E+ L  
Sbjct: 178 QPSPKVMSEVIVIDPLPPSERLEPELAGRLEGLLKRCFAARRKMLRNSLAGLWPEDELSE 237

Query: 251 --HQAGIETNLRAENLSIEDFCRITNIL 276
              +AG+    R + LS + +  +T  L
Sbjct: 238 RAERAGVSLRQRPQELSPQRWVELTRQL 265


>gi|115252788|emb|CAK98224.1| putative dimethyladenosine transferase protein [Spiroplasma citri]
          Length = 282

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 89/274 (32%), Positives = 136/274 (49%), Gaps = 15/274 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +    I+ KK  GQNFL + + +  I +S+  L    ++EIG G G LT  +L L A K+
Sbjct: 8   MRAEGIVVKKSKGQNFLTNTHFINLIVDSAFDLPNTNILEIGPGMGALTSSIL-LKANKL 66

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRIIANLPYNI 129
           + +E D      L          L IIQ D L +D EK F       +PI II+N+PY I
Sbjct: 67  VCVEIDSTLVEYL--TLKFKDQNLTIIQADILTLDLEKLFLTEFLDNNPISIISNIPYYI 124

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + ++F  +      P  + + L+ QKEVGERI AQ NS +Y  LSV+  + +    +  
Sbjct: 125 TSPIIFKLLKIKN--PKVKEIILMMQKEVGERIMAQPNSKNYNSLSVVCQFYSDIEKVSL 182

Query: 190 ISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-----R 243
           +  + F P+PKV S V+ F +    P     +   K  +  F  +RKT+  +L      +
Sbjct: 183 VGRNNFVPAPKVDSIVLKFKLNKKYPALINDKEFIKFIRMMFATKRKTILNNLAIIVNNK 242

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
              E++L +     NLR+ENLS+ DF  + N + 
Sbjct: 243 TLAEDILLKLNYALNLRSENLSLNDFYLLYNEIK 276


>gi|217076587|ref|YP_002334303.1| dimethyladenosine transferase [Thermosipho africanus TCF52B]
 gi|217036440|gb|ACJ74962.1| dimethyladenosine transferase [Thermosipho africanus TCF52B]
          Length = 261

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 14/269 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +   L  YK+  KK +GQNFL +L I KKI ES+    G TV+EIG G G +T+ L+  G
Sbjct: 3   IADYLRQYKLNLKKSLGQNFLTNLEIAKKIVESANVQTGETVLEIGPGAGTITEFLIKKG 62

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A  V+ +E D++  PIL D  ++  N  +I   D LK D +         ++++N+PY+I
Sbjct: 63  AN-VVAVEIDKRLTPIL-DRFNEFEN-FKIYYQDFLKFDMKLL---GENFKVVSNIPYSI 116

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              ++   + +      + +  L+ QKEVG+R+ A+        L+V+    T    +  
Sbjct: 117 TGMIIKKILFSK-----FSTAVLMVQKEVGDRLLAKPGE-DRSFLTVVVQTFTDIEKVLH 170

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           +S   F P P+V S V+ F    N      +E       + F K+RKTL  +LK    +N
Sbjct: 171 VSKGNFVPPPQVDSVVLKFTRKENIYEKYNIEEFWTFVSKCFEKKRKTLLNNLKG-FVKN 229

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           L   +  +  LR + LS +DF ++     
Sbjct: 230 LDCFSEFDLKLRPQQLSNDDFLKLFEKYK 258


>gi|257068507|ref|YP_003154762.1| dimethyladenosine transferase [Brachybacterium faecium DSM 4810]
 gi|256559325|gb|ACU85172.1| dimethyladenosine transferase [Brachybacterium faecium DSM 4810]
          Length = 295

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 133/284 (46%), Gaps = 15/284 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M   +  ++ +     I P K  GQNF++D N ++ I   +G   G  V+E+G G G+LT
Sbjct: 11  MLLTARDIRELAEAAGIRPSKQRGQNFVMDPNTVRTIVGRAGVEPGQAVLEVGPGLGSLT 70

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDF-EKFFNISSP 118
             LL  G  +V+ +E D+    +L           +R  ++  DAL+V          +P
Sbjct: 71  LGLLEAGG-EVVAVELDRGLAELLPLTLRARGVQEDRFRLVHADALQVTELPALPGAGAP 129

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
             ++ANLPYN+ T +L   +          S  ++ Q EV +R+TA   S  YG  SV  
Sbjct: 130 ASLVANLPYNVATPILLTILER---FDSIRSALVMVQSEVVDRLTAGPGSRTYGGPSVKA 186

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKT 236
            W  +A     IS  +F+P P V S ++  + H  P+      E++  +   AF +RRKT
Sbjct: 187 AWYGRAVHAGRISRQIFWPVPNVDSALVELVRHEEPLGTAAERETVFAVVDAAFAQRRKT 246

Query: 237 LRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           LR +L    G     E +L  AGI+   R E L IE+F  I   
Sbjct: 247 LRAALAGWAGSAARSEQILRGAGIDPGARGETLGIEEFRAIARA 290


>gi|313677281|ref|YP_004055277.1| dimethyladenosine transferase [Marivirga tractuosa DSM 4126]
 gi|312943979|gb|ADR23169.1| dimethyladenosine transferase [Marivirga tractuosa DSM 4126]
          Length = 260

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 140/266 (52%), Gaps = 10/266 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            +  KK++GQ+FL D NI +KI ES SG      ++EIG G G L+  L+     +++ +
Sbjct: 3   GVRAKKHLGQHFLKDQNIAQKIVESLSGHKKYQHLLEIGPGTGVLSNFLIDRAEYELLFM 62

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           + DQ+    L++    +  +  II++D L++D   ++  +    II N PYNI +++ F 
Sbjct: 63  DVDQESVDYLQNQYPDYKEK--IIKEDFLRIDLGHYYKEA--FGIIGNFPYNISSQIFFK 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    +  + QKEV ERI A++ S  YG LSVL     +   +F + P+VF 
Sbjct: 119 VLEYRNQIP---EVVGMIQKEVAERIAAKEGSKTYGILSVLLQAFYEVEYLFSVPPNVFN 175

Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P PKVTS V+    +    + C  +   ++ ++ F  RRKTLR +LK     + +    +
Sbjct: 176 PPPKVTSAVLRLKRNETQTLDCDEKLFFRVVKQGFNNRRKTLRNALKTFNLSDEIKSLDL 235

Query: 256 ETNLRAENLSIEDFCRITNILTDNQD 281
             + RAE L++ DF  +TN + + + 
Sbjct: 236 -LDKRAEQLTVNDFVELTNHIANGES 260


>gi|255082199|ref|XP_002508318.1| hypothetical protein MICPUN_84159 [Micromonas sp. RCC299]
 gi|226523594|gb|ACO69576.1| hypothetical protein MICPUN_84159 [Micromonas sp. RCC299]
          Length = 326

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/244 (33%), Positives = 114/244 (46%), Gaps = 13/244 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K   +H  I   K  GQ+ L +  I+  I E  G      V+EIG G GNLT  LL   A
Sbjct: 32  KKNATHGGIQFLKSYGQHILKNPMIVNSIVEKGGVKSTDVVLEIGPGTGNLTMRLLET-A 90

Query: 71  RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI IE D +    L+      P+   L II  D LKVD   F         +AN+PY 
Sbjct: 91  KKVIAIEFDPRMVLELQRRVQGTPHQQNLTIISGDFLKVDLPYF------DVCVANVPYQ 144

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L+F  +S     P + + TL+FQ+E   R+  Q   P Y RLSV T    + T + 
Sbjct: 145 ISSPLVFKLLSHR---PMFRAATLMFQREFAMRLCVQPGDPLYCRLSVNTQLLARTTHLL 201

Query: 189 DISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            +  + F P PKV S+V+   P   + IPC  +    + +  FG++ KTL    +     
Sbjct: 202 KVGKNNFRPPPKVDSSVVRIEPRPISTIPCNFKEWDGLVRLCFGRKNKTLGGIFRTKTVL 261

Query: 248 NLLH 251
            LL 
Sbjct: 262 ELLE 265


>gi|254422682|ref|ZP_05036400.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335]
 gi|196190171|gb|EDX85135.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335]
          Length = 302

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 13/271 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++L    +L +I  +    +G  V+EIG G G LTQ LL   A KV+ +E
Sbjct: 26  GKRARKRFGQHWLCSDQVLNQIVRAGELAEGDLVLEIGPGQGVLTQRLLDTSA-KVLAVE 84

Query: 78  KDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYNIGTR 132
            D+     L D  I+     +  +I+ D L+++F++    F +  P +++AN+PY I   
Sbjct: 85  IDRDLCLQLSDQFIADMASGQFRLIESDFLELNFDQALLDFELDRPNKVVANIPYYITAP 144

Query: 133 LLFNWIS--ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           +L   +       P  + ++ LL QKE+ +R+ AQ  +   G L++   +  +   +  +
Sbjct: 145 ILEKLLGTMRSPNPFPFSNIVLLVQKEISDRLCAQPGTRANGALTIRVQYLAECEEICLV 204

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGEN- 248
            P  F P+PKV S V+   P     P      L ++ +  F ++RK LR +L+ +   + 
Sbjct: 205 PPSAFKPTPKVDSAVVRLRPRPFLTPAEDPIFLSQLVKLGFSQKRKMLRNNLQSIVDRDT 264

Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNIL 276
              LL    +    RAE L + ++  ++N +
Sbjct: 265 LSALLESLSLNPQTRAEGLGVGEWVALSNAV 295


>gi|162452719|ref|YP_001615086.1| dimethyladenosine transferase [Sorangium cellulosum 'So ce 56']
 gi|161163301|emb|CAN94606.1| dimethyladenosine transferase [Sorangium cellulosum 'So ce 56']
          Length = 276

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 92/274 (33%), Positives = 135/274 (49%), Gaps = 13/274 (4%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           ++  +L    + PKK  GQNFL+D++  ++IAE++ + +G  VIEIGAG G LT+ LL  
Sbjct: 2   AIAELLRTRGLSPKKGFGQNFLVDVDAARRIAEAATTTEGGAVIEIGAGLGALTRPLLDR 61

Query: 69  GARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDF-EKFFNISSPIRIIANL 125
            A  V+ IE+D+   PIL++  +      RL +++ DA +VD+       + P  +  NL
Sbjct: 62  -ATHVVAIERDRDLVPILREQLAGPIEEGRLTLLEADAAQVDWVGALSGHARPHAVAGNL 120

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY+I  RLL     A T     +    + Q EV +R+ A   S  YG LSV         
Sbjct: 121 PYHITGRLLEQ---ATTVAHQIDRAVFMVQLEVADRLVAAPGSADYGALSVFVQAAFDVR 177

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            +       F+P P+V S V+   P         ++ +   + AF  RRKTLR + K L 
Sbjct: 178 RLLIARAGAFYPRPEVDSAVVVLTPWRPRRAEETDAFRAAVRAAFSARRKTLRNAWKNLY 237

Query: 246 G------ENLLHQAGIETNLRAENLSIEDFCRIT 273
           G      E     AGI  + R E LS+E F RI 
Sbjct: 238 GWSSQELERHAKDAGISLDARGETLSVEAFARIA 271


>gi|195108513|ref|XP_001998837.1| GI24187 [Drosophila mojavensis]
 gi|193915431|gb|EDW14298.1| GI24187 [Drosophila mojavensis]
          Length = 306

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 12/249 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   +    I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +
Sbjct: 8   KKSRIHNEVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KVI  E D +    L+      P   +L+++  D LK D   FF++      IA
Sbjct: 68  LER-AKKVIACEIDTRLAAELQKRVQGTPMQPKLQVLIGDFLKADLP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  +R+ A+     Y RLS+ T    +
Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K 
Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPINFTEWDGLTRIAFLRKNKTLAATFKV 237

Query: 244 LGGENLLHQ 252
                +L +
Sbjct: 238 NSVMEMLEK 246


>gi|325971816|ref|YP_004248007.1| ribosomal RNA small subunit methyltransferase A [Spirochaeta sp.
           Buddy]
 gi|324027054|gb|ADY13813.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta sp.
           Buddy]
          Length = 292

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 133/287 (46%), Gaps = 15/287 (5%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +   ++  +L   ++   K  GQNFL+   + +KI          TV E+G G G +T +
Sbjct: 8   DSPIAITALLKEEELSMSKKFGQNFLISRAVREKIVALLDVQQAQTVWEVGPGIGAITSL 67

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL  G  KV   E D  F  IL + +        +I  DALK          +P R+  N
Sbjct: 68  LLEKG-TKVTAFEIDHGFCRILSEQAFADELSFRLIAGDALKTLPLTLGQEGAPDRLCGN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+G+ ++   + +D  PP    +    QKEV +R+ A  +S  +   S+L     + 
Sbjct: 127 LPYNVGSVVIAKVLESDYRPPV---MVFTLQKEVVDRLCASPDSKDWSSFSMLAQMDYEV 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKIT-QEAFGKRRKTLRQSL- 241
              F IS   F+P PKVTS+ + F       +P  L  L  +  ++ F +RRKT + +L 
Sbjct: 184 KPAFSISSGSFYPPPKVTSSTVVFTLRPQSLVPSQLRHLFLLVIRDLFAQRRKTAKNNLL 243

Query: 242 --------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                    + G E LL ++G++ + RAE L   DF  ++  L+  Q
Sbjct: 244 SGKIAAQVGKEGVEELLRRSGVDASKRAEALVWSDFIALSESLSSYQ 290


>gi|297200276|ref|ZP_06917673.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083]
 gi|197709390|gb|EDY53424.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083]
          Length = 296

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 125/279 (44%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N ++KI  ++G  D   V+E+G G G+LT  LL
Sbjct: 12  PADIRELAAALGVRPTKQRGQNFVIDANTVRKIVRTAGVRDDDVVVEVGPGLGSLTLALL 71

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V  +E D      L            +R  ++  DA+ V         +P  ++
Sbjct: 72  ET-ADRVTAVEIDDVLASALPATIAARLPDRADRFALVHSDAMHVTE---LPGPAPTALV 127

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 128 ANLPYNVAVPVLLHMLDT---FPSIERTLVMVQAEVADRLAAPPGSKVYGVPSVKANWYA 184

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLR-- 238
           +      I  +VF+P+P V S ++       PI        +  +   AF +RRKTLR  
Sbjct: 185 EVKRAGSIGRNVFWPAPNVDSGLVALTRRTEPIRTTASKREVFAVVDAAFAQRRKTLRAA 244

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
               +      E  L  AG+    R E+L++E+F RI  
Sbjct: 245 LAGWAGSAAAAETALVAAGVSPQARGESLTVEEFARIAE 283


>gi|154249153|ref|YP_001409978.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1]
 gi|154153089|gb|ABS60321.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1]
          Length = 261

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/268 (30%), Positives = 128/268 (47%), Gaps = 18/268 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQNFL      +KI   S      T++EIGAG G LT  L   GA  V  IE D +
Sbjct: 4   KKSLGQNFLSSEIYAEKIVGLSNVEKNDTILEIGAGAGTLTVALAKTGA-TVFAIEIDNR 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             PILK+   ++ N ++II +D L++D     N     + I+N+PY I   +L   +  +
Sbjct: 63  MEPILKERLEKYDN-VKIIFEDFLEMDISFLPNG---YKCISNIPYYITAPILKKLLFTN 118

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +  LT++ QKEVGER+  +  S + G L+V+         +  +    F P+P V
Sbjct: 119 -----FSMLTIMMQKEVGERLLEKPGSSNRGFLTVVLQTVADVEKLLLVPKSAFVPNPDV 173

Query: 202 TSTVIHFIPHLNPIPCCLESLKK---ITQEAFGKRRKTLRQSLKRLG-----GENLLHQA 253
            S V+            L   +        +F ++RKT+  +LK +G      ENLL   
Sbjct: 174 DSIVLKITKKKEFPFSNLSEFESYWTFVSNSFSQKRKTISNNLKSMGMAKEEIENLLKNL 233

Query: 254 GIETNLRAENLSIEDFCRITNILTDNQD 281
            I+TN R E LS E+F  +  ++   ++
Sbjct: 234 NIKTNARPEELSTEEFLSLWRMVYGKEN 261


>gi|159900605|ref|YP_001546852.1| dimethyladenosine transferase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893644|gb|ABX06724.1| dimethyladenosine transferase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 288

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 135/291 (46%), Gaps = 23/291 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++  L+   + P K MGQNFL+D   LK   E +       V+E+G G G 
Sbjct: 1   MNPYTDPSRVRGALNSIGVRPSKSMGQNFLIDPTPLKLALEHAEVNPNDVVVEVGPGLGV 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-----FNI 115
           LT  LL   A  VI IE D +    L+   ++ P  L I++ D L++             
Sbjct: 61  LTWELL-NAAGHVISIELDPRLAGRLRTEFAERP--LTIVESDVLEIAPSAMLAAAGLPA 117

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
            +  +++AN+PY I + LL +++  D+ P     + +L Q EV +RITA+        L+
Sbjct: 118 DTSYKLVANIPYAITSPLLRHFLEGDSPPSL---MMVLMQWEVADRITAKPGDL--SILA 172

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRR 234
                   A ++  +    F P+P V S ++       N +P   ++L K+ +  F + R
Sbjct: 173 HSVQLYATAEIIARVPAASFLPAPAVDSALVLMRRRATNAVPTAPKALFKVIRAGFSQAR 232

Query: 235 KTLRQSL------KRLGGENLLH---QAGIETNLRAENLSIEDFCRITNIL 276
           K L  SL      +  G E +L    QA I+ NLRAE L++E + R+T  L
Sbjct: 233 KKLINSLAGGLAGQGFGKEQVLAAIVQAEIDPNLRAEVLTLEQWARLTETL 283


>gi|289523105|ref|ZP_06439959.1| dimethyladenosine transferase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503648|gb|EFD24812.1| dimethyladenosine transferase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 278

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 138/268 (51%), Gaps = 11/268 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               KK +GQNFL+D NI + + E++   +   V+E+G G G LT+ +LT   R + VIE
Sbjct: 11  GHKAKKSLGQNFLVDPNIARWMVENAALNEDDVVLEVGPGKGMLTKEILTSQCRFLHVIE 70

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+   P L+ I     NR+ +I  D L ++ ++      P +++AN+PYNI T L++  
Sbjct: 71  IDKTLAPFLEPIVKTSKNRMSVIWGDVLTINLKEL--SPPPTKVLANIPYNITTPLIWQI 128

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +     P     L L+ Q E+ +R+ A+  +     + +      KA ++  + P+VF+P
Sbjct: 129 LE-HLVPLGTRELLLMLQLELAQRLCAKPKTKDRSPIGITIEKMGKAQIVKKVPPNVFWP 187

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--------RLGGENL 249
           +PKV S ++H I   +       + +++ + AF +RRKTL  +L         +     L
Sbjct: 188 TPKVESAIVHIIIDKDLKLASDHTWRRLLRVAFARRRKTLANNLSCVYDFFKDKDKTSKL 247

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           L    + T +RAE L+++D+  +   ++
Sbjct: 248 LDDLKLPTTVRAEELTVDDWHHLYEFIS 275


>gi|194745790|ref|XP_001955370.1| GF16271 [Drosophila ananassae]
 gi|190628407|gb|EDV43931.1| GF16271 [Drosophila ananassae]
          Length = 306

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 12/249 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   + T +    I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +
Sbjct: 8   KKTRIHTEVQKQGIVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVRM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KVI  E D +    L+      P   +L+++  D LK +   FF++      IA
Sbjct: 68  LE-KAKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  +R+ A+     Y RLS+ T    +
Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K 
Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237

Query: 244 LGGENLLHQ 252
                +L +
Sbjct: 238 SSVIEMLEK 246


>gi|206895498|ref|YP_002247582.1| dimethyladenosine transferase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738115|gb|ACI17193.1| dimethyladenosine transferase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 279

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 136/277 (49%), Gaps = 15/277 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            +  +L  + I PKK +GQ+FL+  ++  KI  ++G       +EIGAG G LT  L   
Sbjct: 16  DIPQLLKQFSISPKKTLGQSFLICDHVADKIVAAAG--HDDVAVEIGAGTGMLTVRLA-S 72

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
             + VI IE DQ+   +   I++  PN + + + D LK         +    ++ NLPY 
Sbjct: 73  HYKNVIAIEIDQRLKALHNMITADFPNVVFVYE-DFLKW----IPRPTEIPTVVGNLPYY 127

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T +L             +++  + QKE+G R+ A   S  YG LSV     TK  M+F
Sbjct: 128 ITTPILEKVFFQMKP----KTMVFMVQKELGARMVANPGSKTYGALSVFVQSFTKPEMLF 183

Query: 189 DISPHVFFPSPKVTSTVIHFI-PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            ++ + F+P+P+V S V+     +        E L+ + + AF +RRK LR  LK+    
Sbjct: 184 HVTKNCFYPAPEVDSVVVKLEGIYGYEEVVDPEVLEHVVKRAFQQRRKMLRSGLKKEPLL 243

Query: 248 NLL-HQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
                +AGI+T+LR E +++E + R    L   Q+ A
Sbjct: 244 LKKAEEAGIDTSLRPEQITVEQYVRWA-TLVKRQNTA 279


>gi|195394465|ref|XP_002055863.1| GJ10534 [Drosophila virilis]
 gi|194142572|gb|EDW58975.1| GJ10534 [Drosophila virilis]
          Length = 306

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 13/262 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   +    I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +
Sbjct: 8   KKSRIHNEVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KVI  E D +    L+      P   +L+++  D LK D   FF++      IA
Sbjct: 68  LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKADLP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  +R+ A+     Y RLS+ T    +
Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K 
Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237

Query: 244 LGGENLLHQA-GIETNLRAENL 264
                +L +   +  +LR E +
Sbjct: 238 NSVIEMLDKNYKLYRSLRNEQV 259


>gi|254444818|ref|ZP_05058294.1| dimethyladenosine transferase [Verrucomicrobiae bacterium DG1235]
 gi|198259126|gb|EDY83434.1| dimethyladenosine transferase [Verrucomicrobiae bacterium DG1235]
          Length = 271

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 128/276 (46%), Gaps = 14/276 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M       + +L      PKK +GQNFL+D NI++K  E +    G  V+EIG G G LT
Sbjct: 1   MPLSPSQTRELLEQLGHRPKKQLGQNFLIDGNIVRKSLELAQVTPGDHVVEIGPGLGTLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LL  GA  V  +E D      +  +++  PN L +I+ DAL          +   +I+
Sbjct: 61  RALLDAGA-IVHAVEFDPTLGAHVARLAADSPN-LHLIKGDALDHPLGDLPPDTE-YKIV 117

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I T     W++A         +TL+ QKE  +R  A+  +  +G +S+      
Sbjct: 118 ANLPYAISTP----WMAAVLESQLPSVMTLMLQKEAAQRYAAKAGTKQFGAISIFLHAAF 173

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
                 D+S   F+P P V ST++H      P     ES+ ++ +E F +RRK +   L+
Sbjct: 174 DILPGHDVSGSCFYPKPDVGSTLLHLRRKTTPHRFHPESI-QLIREVFQQRRKQISSLLR 232

Query: 243 RLGGENL------LHQAGIETNLRAENLSIEDFCRI 272
           +   +        L   GI+   R E +  E + ++
Sbjct: 233 KAKTDAATRWLNSLTNIGIDPTARPEQIDAEKWIQL 268


>gi|115529417|ref|NP_001070237.1| dimethyladenosine transferase 1, mitochondrial [Danio rerio]
 gi|115313290|gb|AAI24403.1| Zgc:153625 [Danio rerio]
 gi|182891088|gb|AAI65534.1| Zgc:153625 protein [Danio rerio]
          Length = 269

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 87/251 (34%), Positives = 124/251 (49%), Gaps = 15/251 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++  I+  Y +  +K + QNFLLD  +  KI   +G+L+   V E+G GPG LT+ +
Sbjct: 14  PLPTIGEIIKLYNLKAQKQLSQNFLLDTRLTDKIVRQAGNLNNAHVCEVGPGPGGLTRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  GA  ++V+EKD +F P L+ +S   P R+ I Q D L    E+ F         +  
Sbjct: 74  LKAGAADLLVVEKDMRFIPGLQLLSEAAPGRIRIAQGDILAYKLERRFPANITKTWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFW-----ESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+N+ T L+  W+   +            LTL FQKE  ER+TA   S   
Sbjct: 134 PNLHIIGNLPFNVSTPLIIKWLEQMSNRTGIFMFGRTRLTLTFQKEAAERLTASTGSRQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLSV+  + T     F I    F P P V   V+HF P   P I    + ++KI + AF
Sbjct: 194 SRLSVMAQYLTTVKSCFTIPGQAFVPKPNVDVGVVHFTPLAQPQIQQPFKLVEKIVKNAF 253

Query: 231 GKRRKTLRQSL 241
             RRK  R+ L
Sbjct: 254 QFRRKHCRRGL 264


>gi|302338023|ref|YP_003803229.1| dimethyladenosine transferase [Spirochaeta smaragdinae DSM 11293]
 gi|301635208|gb|ADK80635.1| dimethyladenosine transferase [Spirochaeta smaragdinae DSM 11293]
          Length = 293

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 124/284 (43%), Gaps = 14/284 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +   SL   L    +  +K  GQNFL+   +  KI +         V EIG G G +T M
Sbjct: 9   DSPASLAAFLEARGLSMQKRFGQNFLVSPGVRSKIVKLLELSKDDHVWEIGPGLGAMTHM 68

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           +L L  R + V E D+ F   L++  S      E+++ D +K     +   + P  I  N
Sbjct: 69  VLGLC-RNITVFEIDRGFISFLREHFSMVEG-FELVEGDVMKNWQPAYTRFAPPSLIFGN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN     + + I A   P     +    QKEV ER++A   +  YG  S++  +    
Sbjct: 127 LPYNCAASFIGDLIEAGANP---RKMVFTIQKEVAERMSASPGTKRYGAFSMICAFSWDV 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK-- 242
            +   I P  FFP P+VTS +I  +PH               ++ F  RRKT+R SL   
Sbjct: 184 RIAGIIKPGSFFPVPEVTSAIIEMVPHHRFSGLSAGLASTFAKDLFANRRKTVRNSLSGG 243

Query: 243 ----RLGGENLL---HQAGIETNLRAENLSIEDFCRITNILTDN 279
               RLG   +L    +AGI    R E +S+E   +    LTD 
Sbjct: 244 ILAARLGKNAILNAAEEAGIGLGQRGEEVSVEMVAKACGHLTDK 287


>gi|15616761|ref|NP_239973.1| dimethyladenosine transferase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386908|sp|P57241|RSMA_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|25286065|pir||C84946 dimethyladenosine transferase [imported] - Buchnera sp.  (strain
           APS)
 gi|10038824|dbj|BAB12859.1| dimethyladenosine transferase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 273

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 93/267 (34%), Positives = 139/267 (52%), Gaps = 9/267 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K +P K  GQNFL++ + +K I +        T++EIG G   LT+ +  L   ++IVIE
Sbjct: 7   KHLPLKKYGQNFLINKDTIKNIIKIIDPKTTETLVEIGPGLAALTKPMCELL-EELIVIE 65

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFN 136
            DQ    +LK  S    ++L +   +AL  +F   F+     IRI  NLPYNI T L+  
Sbjct: 66  IDQDLLFLLKKRS--FYSKLIVFYQNALNFNFLNLFHKKKQLIRIFGNLPYNISTSLIIF 123

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                      + +  + QKEV ER+ +   +  YGRLS+++ +     ++ ++SP  F 
Sbjct: 124 LFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQYYCDIKILLNVSPEDFR 180

Query: 197 PSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P PKV S  I+  PH N       +  L  IT++AF  RRK LR SLK L  E  L +  
Sbjct: 181 PIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKILRHSLKNLFSEKELIKLE 240

Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281
           I +NLRAEN+S+  +C++ N L    +
Sbjct: 241 INSNLRAENVSVSHYCKLANYLYKKSN 267


>gi|220904363|ref|YP_002479675.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868662|gb|ACL48997.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 279

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 91/279 (32%), Positives = 135/279 (48%), Gaps = 12/279 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
            H  K I++H     KK +GQ+FL   +   +IA          +IEIG GPG LT+ + 
Sbjct: 6   PHMKKNIVTHTP-RAKKSLGQHFLRREDTCCRIAALIAPAAQDRIIEIGPGPGALTRAIE 64

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
                +++++EKD+ +    + +   +   + I   DALK  + +  +   P +II NLP
Sbjct: 65  ATPHSRLLLLEKDRHWAAERQRLGGANTQAVLI---DALKFAWRRI-SPEEPWKIIGNLP 120

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YN+ + L+++  S  T    W+    + QKEVG+R+ A   + HYG LSV      +  M
Sbjct: 121 YNVASPLIWDIFSRST---GWQRAAFMVQKEVGQRLAAHPGTGHYGALSVWVQSYARPRM 177

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL- 244
            F + P  F P PKV S V+ F P   N  P   E L ++ +  F +RRK L    +R  
Sbjct: 178 EFVVGPGAFSPPPKVDSAVLSFEPLPANERPAHPELLSRLLRICFQQRRKQLGGVFRRAA 237

Query: 245 --GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             G E  LH A I+  LR E L+  DF RI        D
Sbjct: 238 QPGLEKSLHDACIDPALRPEALTCSDFQRIAAFWASQLD 276


>gi|58385178|ref|XP_313763.2| AGAP004465-PA [Anopheles gambiae str. PEST]
 gi|55240843|gb|EAA09266.2| AGAP004465-PA [Anopheles gambiae str. PEST]
          Length = 306

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 12/248 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   ++   I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +
Sbjct: 8   KKSRVHDGVAKQGIVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVKI 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L    +KV+  E D +    L+          +L+I+  D LK D   FF+I      +A
Sbjct: 68  LE-KVKKVVACEIDTRLVAELQKRVQGTHMQPKLQILIGDVLKTDLP-FFDIC-----VA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I +  +F  +      PF+    L+FQ+E  +R+ A+     Y RLS+ T    +
Sbjct: 121 NMPYQISSPFVFKLL---LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K+
Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLAAAFKQ 237

Query: 244 LGGENLLH 251
                 L 
Sbjct: 238 TTVLTTLE 245


>gi|125774831|ref|XP_001358667.1| GA11224 [Drosophila pseudoobscura pseudoobscura]
 gi|195145334|ref|XP_002013651.1| GL24250 [Drosophila persimilis]
 gi|54638406|gb|EAL27808.1| GA11224 [Drosophila pseudoobscura pseudoobscura]
 gi|194102594|gb|EDW24637.1| GL24250 [Drosophila persimilis]
          Length = 306

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 128/304 (42%), Gaps = 40/304 (13%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   +    I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +
Sbjct: 8   KKSRVHNEVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRPTDVVLEIGPGTGNMTVRM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KVI  E D +    L+      P   +L+I+  D LK +   FF++      IA
Sbjct: 68  LE-KAKKVIACEIDTRLAAELQKRVQATPMQPKLQILIGDFLKAELP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  +R+ A+     Y RLS+ T    +
Sbjct: 121 NVPYQISSPLIFKLL---LHRPIFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K 
Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237

Query: 244 LGGENLLHQ-----------------------AGI-----ETNLRAENLSIEDFCRITNI 275
                +L +                        GI        LRA ++ I+DF R+   
Sbjct: 238 SSVIEMLEKNYKVFRSLRNEPLEEGFNMQEKVIGILEELEMATLRARSMDIDDFMRLLRA 297

Query: 276 LTDN 279
               
Sbjct: 298 FNSK 301


>gi|224090635|ref|XP_002188905.1| PREDICTED: putative putative dimethyladenosine transferase
           [Taeniopygia guttata]
          Length = 305

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 114/260 (43%), Gaps = 19/260 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I + +       ++E+G G GNLT  +L    +KVI  E D +    
Sbjct: 27  GQHILKNPLVVNSIIDKAALRRTDVILEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 85

Query: 86  LKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+         N+LEI   D LK D   F         +ANLPY I +  +F  +     
Sbjct: 86  LQKRVQGTCLANKLEIKVGDILKTDLPFF------DACVANLPYQISSPFVFKLL---LH 136

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            PF+    L+FQ+E   R+ A+  S  Y RLS+ T    +   +  +  + F P PKV S
Sbjct: 137 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFKPPPKVES 196

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETN 258
           +V+   P   P P   +    + + AF ++ KTL  + K    E LL +       +   
Sbjct: 197 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDRNYQVHCSLHNT 256

Query: 259 LRAENLSIEDFCRITNILTD 278
              EN  I +  +I  +L D
Sbjct: 257 EIPENFKIAE--KIQTVLKD 274


>gi|194906638|ref|XP_001981404.1| GG11635 [Drosophila erecta]
 gi|190656042|gb|EDV53274.1| GG11635 [Drosophila erecta]
          Length = 306

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 18/285 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   +    I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +
Sbjct: 8   KKSRIHNEVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KVI  E D +    L+      P   +L+++  D LK +   FF++      IA
Sbjct: 68  LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  ER+ A+     Y RLS+ T    +
Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K 
Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237

Query: 244 LGGENLLHQA-GIETNLRAENLSIEDFCRITNI---LTDNQDIAI 284
                +L +   +  +LR E   +ED  ++ +    + + QD+A+
Sbjct: 238 TSVLEMLEKNYKLYRSLRNE--PVEDDFKMQDKVISILEEQDMAV 280


>gi|46399670|emb|CAF23119.1| putative dimethyladenosine transferase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 256

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 128/259 (49%), Gaps = 13/259 (5%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           ++D NI++KI  +S    G  V+EIG GPG+LTQ +L + A  V+ +EKD      LK  
Sbjct: 1   MIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAH-VVAVEKDFVLARELK-R 58

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFN----ISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
                 +LEI  +D L    E+            ++IANLPY++ T +L   +       
Sbjct: 59  FQTPSKQLEIFCEDILMFSVEEELQSRLRDDQKAKVIANLPYHLTTPILAEMVVRRK--- 115

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            + SLT++ Q+EV  R+TA      Y   ++   + +K    F +S + F+P+PKV S +
Sbjct: 116 LFSSLTVMVQEEVARRMTALPGQSDYSSFTIFLNFYSKPRYGFTVSRNCFYPAPKVDSAI 175

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRA 261
           +       P     +   KIT+ AF +RRK LR SLK L       N L   G     R 
Sbjct: 176 VVLELKEPPPNIDAQVFFKITRTAFEQRRKMLRASLKSLFDPSKISNALEIIGQNPQARP 235

Query: 262 ENLSIEDFCRITNILTDNQ 280
           E LS+EDF ++ + L  ++
Sbjct: 236 EVLSLEDFIKLYHELYSSE 254


>gi|157872123|ref|XP_001684610.1| ribosomal RNA adenine dimethylase family protein [Leishmania major
           strain Friedlin]
 gi|68127680|emb|CAJ05804.1| putative ribosomal RNA adenine dimethylase family protein
           [Leishmania major strain Friedlin]
          Length = 374

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 13/235 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I+  K  GQ+ L +  ++  I E +       VIEIG G GNLT+ LL   A+KVI  E
Sbjct: 68  GIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLLQT-AKKVIAFE 126

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+II+ + L+ DF +F       + +AN+PY I + L+F
Sbjct: 127 IDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPRF------DKCVANVPYAISSALVF 180

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      P ++   L+FQ+E   R+ AQ  S  Y RLSV +    + + +  IS + F
Sbjct: 181 KLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARCSHLMKISKNSF 236

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
            P PKV S+VI   P   P     E    + +  F ++ K      +       L
Sbjct: 237 NPPPKVESSVIRLDPKYPPPDVDFEEWDGLVKMLFSRKNKKSSSIFRTKAAAQAL 291


>gi|256826937|ref|YP_003150896.1| dimethyladenosine transferase [Cryptobacterium curtum DSM 15641]
 gi|256583080|gb|ACU94214.1| dimethyladenosine transferase [Cryptobacterium curtum DSM 15641]
          Length = 296

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 131/277 (47%), Gaps = 16/277 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              + + +L  + +  KK +GQ+FL++  ++++I + +       ++E+G G G LT  L
Sbjct: 13  SVRATRAVLEAHGLATKKALGQHFLINEGVVRRICDVAELSCEDDILEVGPGIGTLTVAL 72

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   AR+V  IE+D     +L +      +R E+I+ DAL V  +      +P +++ANL
Sbjct: 73  LH-CARRVAAIERDVDLPAVLAETCDFAHDRFELIRCDALSVGPDDL--SFAPNKLVANL 129

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY +   L+ +           +S T++ Q EV +R+ A   + +YG  +V         
Sbjct: 130 PYAVAATLVLDVFERFN---SIQSATVMVQSEVADRMAAHPGTKNYGAFTVKLALFAHPV 186

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             F ++P  FFP P+V STVI        N  P      + +   AF  RRKT+  S + 
Sbjct: 187 SRFTVAPTNFFPPPRVQSTVIRLDRAEQDNLSPDERRCARMMADAAFATRRKTVANSCRA 246

Query: 244 LGG--------ENLLHQAGIETNLRAENLSIEDFCRI 272
                      + +L  + I+   R E+LS+E+F  +
Sbjct: 247 YFAGRVDAASIDQVLAASNIDPRRRGESLSLEEFKCL 283


>gi|326433493|gb|EGD79063.1| dimethyladenosine transferase [Salpingoeca sp. ATCC 50818]
          Length = 310

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 123/288 (42%), Gaps = 34/288 (11%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
               ++  K  GQ+ L +  ++  I + +      TV+EIG G GNLT  LL   A K+I
Sbjct: 24  RRTGVLFNKDFGQHILKNPLVVTGIIDKANIRSSDTVLEIGPGTGNLTIKLLE-KAGKLI 82

Query: 75  VIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
             E D +    L    S+  + ++L ++  DA+K     F         +AN+PY I + 
Sbjct: 83  AYEVDSRLADELVKRVSKTMYKSKLHLVLGDAIKNPLPAF------DVCVANMPYQISSP 136

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
            +F  +      P +    L+FQ+E   R+ A+    HY RLSV     +    +  +S 
Sbjct: 137 FVFKILKHR---PLFRCAVLMFQREFALRLVAKPGEEHYCRLSVNAQLLSNIEHVMKVSK 193

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL-- 250
           + F P PKV S+V+  +PH       L     + + AF ++ +TL  + K+ G   LL  
Sbjct: 194 NNFRPPPKVESSVVRIVPHRPAPDVDLSEFDGLLRIAFERKNRTLAAAFKKKGVVALLLQ 253

Query: 251 --HQAGIET------------------NLRAENLSIEDFCRITNILTD 278
              Q G E                   + R + L++ DF R+     D
Sbjct: 254 NFKQLGGEPPEDFKQFIVDVLTESDYASKRPQQLAVADFLRLLKAFND 301


>gi|322800097|gb|EFZ21203.1| hypothetical protein SINV_11803 [Solenopsis invicta]
          Length = 353

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 26/298 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ IL  Y++   K + QNFL+D N+  KI + +G+L G  V+EIG GPG LT+ +
Sbjct: 8   PLPTIRDILKIYRLNAIKRLSQNFLMDHNLTDKIIKKAGNLAGSQVLEIGPGPGGLTRSI 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF--------- 113
           L     +++V+EKD++F P L+ ++        +++II D+ L  + E  F         
Sbjct: 68  LRRVPERLVVVEKDERFKPTLEMLAESFSAINGKMDIIYDNILNTNIESLFPEEKKRTWN 127

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNS 168
           +    I +I NLP+++ T L+  W+ A       W      +TL FQKEV ER+ AQ   
Sbjct: 128 DKPPDIFLIGNLPFSLSTHLIIKWLHAIAEQRGPWAFGRTKMTLTFQKEVAERLVAQPFG 187

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQ 227
               RLSV+    T  T+ F I    F P P V   V+ F P + P      +  +K+ +
Sbjct: 188 EQRCRLSVMAQAWTFPTLRFIIPGKAFVPKPDVDVGVVSFAPLVKPRTQHDFKFFEKVVR 247

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAG--------IETNLRAENLSIEDFCRITNILT 277
             F  R+K   + ++ L  +      G        +E  LR   L++E+  R+     
Sbjct: 248 HLFSFRQKYSIRCIETLFPKERCKDLGLMMYKLADLEPTLRPTQLTVEEVDRLATAYK 305


>gi|195449214|ref|XP_002071976.1| GK22567 [Drosophila willistoni]
 gi|194168061|gb|EDW82962.1| GK22567 [Drosophila willistoni]
          Length = 306

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 13/262 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   +    I+  K  GQ+ L +  I+  + E +       V+EIG G GN+T  +
Sbjct: 8   KKSRVHNEVQKQGIVFNKDFGQHILKNPLIITAMLEKAALRPTDVVLEIGPGTGNMTVRI 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   ++KVI  E D +    L+      P   +L+++  D LK +   FF++      IA
Sbjct: 68  LE-KSKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  +R+ A+     Y RLS+ T    +
Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K 
Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237

Query: 244 LGGENLLHQA-GIETNLRAENL 264
                +L +   +  +LR E L
Sbjct: 238 NSVIEMLEKNYKLYRSLRNEQL 259


>gi|296140913|ref|YP_003648156.1| dimethyladenosine transferase [Tsukamurella paurometabola DSM
           20162]
 gi|296029047|gb|ADG79817.1| dimethyladenosine transferase [Tsukamurella paurometabola DSM
           20162]
          Length = 310

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 124/285 (43%), Gaps = 20/285 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF+ D N ++KI  ++G       +E+G G G+L  + L
Sbjct: 15  PAEIRGLAGQLSVRPTKQLGQNFVHDPNTVRKIVAAAGVRPDDIALEVGPGLGSL-TLAL 73

Query: 67  TLGARKVIVIEKDQQFFPILK----DISSQHPNRLEIIQDDALKVDFEKF-----FNISS 117
              A  V  +E D      L     D + +    L +I +DALKV  E+       +  +
Sbjct: 74  LDAAAAVTAVEIDPVLAQQLPQTVGDRAPELAGNLTVIGEDALKVTGEQLVAATGRDRGA 133

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P  ++ANLPYN+   +L + ++     P   ++ ++ Q EV +R+ A   S  YG  SV 
Sbjct: 134 PTVLVANLPYNVAVPVLLHLLAE---VPTLRTVLVMVQLEVADRLAAGPGSRVYGVPSVK 190

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRK 235
             +         +   VF+P P V S ++    H   +        L      AF +RRK
Sbjct: 191 AAYYGAVRKAGTVGRAVFWPEPNVESGLVRIDLHDPADRPDVPRADLWAAIDGAFAQRRK 250

Query: 236 TLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
           TLR +L    G        L  AG++   R E L+++ F  I   
Sbjct: 251 TLRAALSGWAGSPALAEEALVAAGVDPRERGEKLTVDQFAAIARA 295


>gi|227832678|ref|YP_002834385.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182836|ref|ZP_06042257.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453694|gb|ACP32447.1| dimethyladenosine transferase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 280

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 74/276 (26%), Positives = 120/276 (43%), Gaps = 16/276 (5%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ + +   + P K +GQNFL D N +++I  ++       V+E+G        + L  
Sbjct: 11  EIRELAAELDVTPTKKLGQNFLHDPNTIRRIVAAADLSPEDRVVEVGP-GLGSLTLGLLG 69

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNR----LEIIQDDALKVDFEKFFNISSPIRIIAN 124
               V  +E D +    L D  +         L +++ DAL V+  +      P  ++AN
Sbjct: 70  EVEHVTAVEIDPRLAGKLPDTVAARAADFADRLSVVEKDALTVEAGEL---GEPTALVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +      P    + ++ Q EV ER+ A   S  YG  SV   +    
Sbjct: 127 LPYNVAVPVLLHLLE---VYPSIRRVLVMVQLEVAERLAAGPGSKVYGIPSVKASFYGPV 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
                I  +VF+P+PK+ S ++               L  +   AF +RRKTLR +L   
Sbjct: 184 RQAGTIGKNVFWPAPKIESGLVRIDCTRPFDEALRPRLFALIDAAFAQRRKTLRAALAGF 243

Query: 245 GG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
            G     E  L  A I+  LR E L +EDF R+  +
Sbjct: 244 YGSAAAAEEALRTADIDPRLRGEKLGVEDFVRLAEV 279


>gi|302336213|ref|YP_003801420.1| dimethyladenosine transferase [Olsenella uli DSM 7084]
 gi|301320053|gb|ADK68540.1| dimethyladenosine transferase [Olsenella uli DSM 7084]
          Length = 347

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 27/296 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              + K++L  + +  K  +GQNFL+   ++ +I   +       V+E+G G G LT  +
Sbjct: 37  NPRATKSVLDGFGLCTKHRLGQNFLVSDAVIGRILGLAELGTSDVVLEVGPGIGTLTVAM 96

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN----------I 115
           L L A  V  +E D+   P+L    ++   R  ++  DAL VD                 
Sbjct: 97  LPL-AGAVCSVEADRSLAPVLAHTCARDSERFSLVLGDALDVDGASLSAELASLGIDGLP 155

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +SP ++++NLPY +   ++          P      ++ Q EV +R++A+  S  YG  +
Sbjct: 156 ASPNKLVSNLPYQVAATIVLKAFQEM---PSIRRAVVMVQSEVADRMSARPGSRAYGGYT 212

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK--------ITQ 227
              G     T  F++ P  F P+P V S V+         P   E L             
Sbjct: 213 AKLGLYGTVTGRFEVGPGNFMPAPHVDSAVVRIDRVPACDPQTAEPLDTGRLASCVVAID 272

Query: 228 EAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
            AF +RRKT+R S+   G E       L +A IE  +RAE LS  DF R+   L  
Sbjct: 273 AAFAQRRKTIRNSMAASGFERDALDVALAEASIEPTVRAEALSTADFVRLDAALRS 328


>gi|86608465|ref|YP_477227.1| dimethyladenosine transferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|119365854|sp|Q2JMR8|RSMA_SYNJB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|86557007|gb|ABD01964.1| dimethyladenosine transferase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 282

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 125/271 (46%), Gaps = 19/271 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGIT------VIEIGAGPGNLTQMLLTLGARKVI 74
           P+K  GQ++L D  + + I  ++   D         V+EIG G G LT+ LL  G  +V+
Sbjct: 4   PRKRFGQHWLKDPAVHEAILRAAQLNDLERGADPTWVLEIGPGTGQLTRRLLAQGV-QVV 62

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +E D+    +L+   +  P R  +++ D       +      P  ++AN+PYN+   +L
Sbjct: 63  AVEIDRDLCRLLRKRFADQP-RFHLVEGDF-----LRLPLPPQPRLLVANIPYNLTGSIL 116

Query: 135 FNWISADTWP-PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
              + +   P   +E + LL QKE+ ER+ A   S  YG LS+ T +     ++  + P 
Sbjct: 117 EKVLGSPAQPVRQFERIVLLVQKELAERLQAGPGSKAYGALSLRTQYLADCELICRVPPT 176

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGEN---- 248
            F P+PKV S VI   P   P P         + ++ F  RRK L  +L  L        
Sbjct: 177 AFKPAPKVESAVIRLTPRPAPTPVRDPCWFNHLLRQGFSTRRKKLVNALGSLVEREVVAA 236

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
            L Q  +  + RAE L +  +  ++++L + 
Sbjct: 237 ALAQLRLNPDARAEELDLPHWLALSDLLLEK 267


>gi|91762164|ref|ZP_01264129.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717966|gb|EAS84616.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 262

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 94/263 (35%), Positives = 148/263 (56%), Gaps = 9/263 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK +GQNFL+D  +L+KI   +   +   V+EIG G GNLT  +L    +K+ V+EK
Sbjct: 3   IKAKKSLGQNFLIDREVLEKIVSITDITNKE-VLEIGPGSGNLTTYILKKKPKKLYVVEK 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     +LK+   +    ++II DD LKV      +    + +  NLPYNI T +L  WI
Sbjct: 62  DDDLAILLKE---KFDTEIKIINDDILKVSESTISD--QKLSVFGNLPYNISTEILSKWI 116

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                  +++SL L+FQKEV +RI ++ N+ +YGRLS+L+ W+     + DI P  F P 
Sbjct: 117 LNIGSNFWFDSLVLMFQKEVADRIISKFNNSNYGRLSILSSWKLNVKKILDIKPQSFSPR 176

Query: 199 PKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGI 255
           PK+ S+++ F P  N       ++L+KIT+  F +RRK L++   ++   G+ +  + GI
Sbjct: 177 PKIDSSLLLFTPKENFFKLKDPKNLEKITRIFFSQRRKMLKKPFNQVFDNGKEVAEKFGI 236

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           + NLR +NL  E + ++     D
Sbjct: 237 DLNLRPQNLEPEVYFKLVKEYED 259


>gi|195036390|ref|XP_001989653.1| GH18676 [Drosophila grimshawi]
 gi|193893849|gb|EDV92715.1| GH18676 [Drosophila grimshawi]
          Length = 306

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 12/249 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   +    I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +
Sbjct: 8   KKSRIHHEVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KVI  E D +    L+      P   +L+++  D LK +   FF++      IA
Sbjct: 68  LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  +R+ A+     Y RLSV T    +
Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGDKLYCRLSVNTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K 
Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237

Query: 244 LGGENLLHQ 252
                +L +
Sbjct: 238 NSVMEMLEK 246


>gi|282853600|ref|ZP_06262937.1| dimethyladenosine transferase [Propionibacterium acnes J139]
 gi|282583053|gb|EFB88433.1| dimethyladenosine transferase [Propionibacterium acnes J139]
 gi|314922156|gb|EFS85987.1| dimethyladenosine transferase [Propionibacterium acnes HL001PA1]
 gi|314965239|gb|EFT09338.1| dimethyladenosine transferase [Propionibacterium acnes HL082PA2]
 gi|314982376|gb|EFT26469.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA3]
 gi|315092583|gb|EFT64559.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA4]
 gi|315093999|gb|EFT65975.1| dimethyladenosine transferase [Propionibacterium acnes HL060PA1]
 gi|315104569|gb|EFT76545.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA2]
 gi|327329529|gb|EGE71289.1| dimethyladenosine transferase [Propionibacterium acnes HL103PA1]
          Length = 298

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 88/287 (30%), Positives = 133/287 (46%), Gaps = 22/287 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S++ I     + P K  GQNF+ D N +++I   +       VIE+G G G+LT  L
Sbjct: 8   NPASIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAADRVIEVGPGLGSLTLGL 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRI 121
           L  GA +V+ IE D+     L D  ++       RLE++  DAL V   K    + P  +
Sbjct: 68  LETGA-EVVAIEIDEVLANQLPDTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTAL 123

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   +L + ++     P W +  ++ Q EV +R+ A   S  YG  S    W 
Sbjct: 124 VANLPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWY 180

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP------CCLESLKKITQEAFGKRRK 235
            +AT + ++ P VF+P P V S ++      +P             + ++   AF  RRK
Sbjct: 181 AEATRVGNVPPTVFWPVPNVDSGLVRITRRRSPHVDGRNPRVTRSQVFRVVDAAFASRRK 240

Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            LR +L  L G       L+  AGI+   R E L I D  R+   L 
Sbjct: 241 MLRSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVAEALA 287


>gi|330844811|ref|XP_003294306.1| hypothetical protein DICPUDRAFT_84787 [Dictyostelium purpureum]
 gi|325075260|gb|EGC29171.1| hypothetical protein DICPUDRAFT_84787 [Dictyostelium purpureum]
          Length = 315

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 109/241 (45%), Gaps = 12/241 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
             H++    K  GQ+ L +  I+  I E +      TV+EIG G GNLT  LL    +KV
Sbjct: 23  ARHHEFQMNKSYGQHLLKNPLIIDSIVEKAQLKSTDTVLEIGPGTGNLTMKLLE-NCKKV 81

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I +E D +    L+   +  P    L+II  D LKVD   F         +AN+PY I +
Sbjct: 82  IAVEVDPRMAAELQKRVAASPYAQHLQIILGDFLKVDLPYF------DVCVANVPYQISS 135

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L F  ++     P + +  L+FQ+E   R+ A+     Y RLSV T   +K T +  + 
Sbjct: 136 PLTFKLLAHR---PIFRTAVLMFQREFALRLAAKPGDSLYCRLSVNTQLLSKVTHLMKVG 192

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S V+   P   P P        + +  F ++ KTL    +       L+
Sbjct: 193 KNNFLPPPKVESAVVKIEPFNPPPPINFIEWDGLVKLCFSRKNKTLSGIFRVGSVIETLN 252

Query: 252 Q 252
           Q
Sbjct: 253 Q 253


>gi|162446903|ref|YP_001620035.1| dimethyladenosine transferase [Acholeplasma laidlawii PG-8A]
 gi|161985010|gb|ABX80659.1| dimethyladenosine transferase [Acholeplasma laidlawii PG-8A]
          Length = 262

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 134/269 (49%), Gaps = 19/269 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              KK  GQNFL D N+LKKI +S+       V+EIG G G LTQ ++   A+K +  E 
Sbjct: 2   HQAKKRFGQNFLTDKNLLKKIVDSAQI-HDKNVLEIGPGLGALTQFIVK-DAKKYLAYEI 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLF 135
           D     +L++  S+  N   II  D L+ D     +      PI +I NLPY I T ++F
Sbjct: 60  DYSLKDVLENFLSEDSN---IIFQDFLESDVTNDLDTYFKGEPIHLIGNLPYYITTPIIF 116

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            ++  D      ++ T++ QKEVG+R+ ++KN   Y   S +  + T   ++ +++  +F
Sbjct: 117 KFLEIDQ----LKTATIMVQKEVGDRMISKKNLKSYNAFSAILQYFTDVRLVVNVNRKMF 172

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENL----- 249
            P PKV S V+        +   LE    +I + +F  +RKTL  +L     E+      
Sbjct: 173 NPVPKVDSMVVQLTKKETKLDKSLELKFIQIVKLSFMHKRKTLLNNLSTGLNEDKAKILE 232

Query: 250 -LHQAGIETNLRAENLSIEDFCRITNILT 277
            L    ++   RAE+LS++DF  +T  L 
Sbjct: 233 SLKSLNLDEKTRAESLSVDDFITLTEKLY 261


>gi|193214866|ref|YP_001996065.1| dimethyladenosine transferase [Chloroherpeton thalassium ATCC
           35110]
 gi|193088343|gb|ACF13618.1| dimethyladenosine transferase [Chloroherpeton thalassium ATCC
           35110]
          Length = 256

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/255 (31%), Positives = 120/255 (47%), Gaps = 11/255 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL+D NI +KI  S+   +   VIEIG G G+LT+++  +  R    +E D +
Sbjct: 13  KKSFGQNFLVDSNISRKIVRSAEIAEHDNVIEIGPGFGSLTKIISEVMPR-FTCVELDHK 71

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                  IS + PN + +I DD LKVD  K    + P+ ++ N+PY I + +LF  I   
Sbjct: 72  LADF---ISREFPN-VNLISDDFLKVDLAKLAE-TKPLTVLGNIPYAITSPILFKLIENR 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 +   L+ Q EV  R+TA+  +  YG L+V      K   +F +   VF P P+V
Sbjct: 127 AH---IDRAVLMMQDEVARRLTAEPKTKQYGILAVQLQAFGKPEYLFKVPKTVFKPRPEV 183

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S V+                +   + AF  RRKTL  +LK     + L  A      RA
Sbjct: 184 ESAVVRIDFSKPVEIKNPSEFQTFVRTAFRMRRKTLANNLKGKYDVSAL--APEVLKKRA 241

Query: 262 ENLSIEDFCRITNIL 276
           E  S+ +F  +   +
Sbjct: 242 EAFSVTEFVALYEQV 256


>gi|212696052|ref|ZP_03304180.1| hypothetical protein ANHYDRO_00588 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676961|gb|EEB36568.1| hypothetical protein ANHYDRO_00588 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 255

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 122/255 (47%), Gaps = 9/255 (3%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       ++K I   Y     K +GQNFL+D N + KI + S    G  ++EIG G G 
Sbjct: 1   MKKLYSPKTIKLIQDLYGFKFTKSLGQNFLVDKNFVDKIIDLSEVS-GENILEIGPGIGT 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS 117
           ++Q +     +K++VIE D+   PILKD   +  N ++II  D LK D +K         
Sbjct: 60  ISQEMAKTC-KKLVVIEIDKTLIPILKDNLGEFSN-VDIINADILKTDLKKIIKENFSGE 117

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             ++++NLPY I T ++      D      + +T++ QKEV +R+ A + S  Y  LSV 
Sbjct: 118 DFKVVSNLPYYITTPIIEKLFEEDLP---CKDMTIMVQKEVADRMKADEKSKDYSSLSVF 174

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             +  + T  F +   VF P PK+ S V+     L         L  I +  F KRRKT+
Sbjct: 175 IKYYAEITGQFKVPKSVFMPQPKIDSQVLKLNLRLYDEKVNRNILFSIVRAGFNKRRKTI 234

Query: 238 RQSLKRLGGENLLHQ 252
             SL  +  +  L +
Sbjct: 235 LNSLSSVIEKEDLKK 249


>gi|198436563|ref|XP_002125054.1| PREDICTED: similar to GF16271, partial [Ciona intestinalis]
          Length = 381

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 125/272 (45%), Gaps = 16/272 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
            +   I+    +GQ+ L +  I+  + E +      TV+EIG G GN+T  +L     KV
Sbjct: 16  ATKQGIMFNTGVGQHILKNPLIINGMVEKAALKATDTVLEIGPGTGNMTVKMLE-KVNKV 74

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I  E D +    L+      P   +L ++  D LK++   FFN+      +ANLPY I +
Sbjct: 75  IACEIDPRMSAELQKRVCGTPLQKKLHLMVGDVLKLESLPFFNVC-----VANLPYQISS 129

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++F  +      P +    L+FQ+E  +R+ A+     Y RLS+ T    +  ++  + 
Sbjct: 130 PIVFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGEKLYCRLSINTQLLARVDLLMKVG 186

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S+V+   P   P P        + + AF ++ KTL    +      +L 
Sbjct: 187 KNNFKPPPKVESSVVRIEPRNPPPPINFTEWDGLVRIAFLRKNKTLSGLFRTSSVLEMLE 246

Query: 252 QA-GIETNLRAENLSIEDFC---RITNILTDN 279
           +   I  +L  E +  +D C   ++ +IL +N
Sbjct: 247 KNYRIHCSLNNETV-PDDLCMKTKVCSILEEN 277


>gi|327335119|gb|EGE76830.1| dimethyladenosine transferase [Propionibacterium acnes HL097PA1]
          Length = 298

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 22/287 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S++ I     + P K  GQNF+ D N +++I   +       VIE+G G G+LT  L
Sbjct: 8   NPASIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAADRVIEVGPGLGSLTLGL 67

Query: 66  LTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           L  GA +V+ IE D+     L     +       RLE++  DAL V   K    + P  +
Sbjct: 68  LETGA-EVVAIEIDEVLANQLPGTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTAL 123

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   +L + ++     P W +  ++ Q EV +R+ A   S  YG  S    W 
Sbjct: 124 VANLPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWY 180

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE------SLKKITQEAFGKRRK 235
            +A  + ++ P VF+P P V S ++       P     +       + ++   AF  RRK
Sbjct: 181 AEAIRVGNVPPTVFWPVPNVDSGLVRITRRRPPHVDGRDPRVTRSQVFRVVDAAFASRRK 240

Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            LR +L  L G       L+  AGI+   R E L I D  R+   L 
Sbjct: 241 MLRSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVAEALA 287


>gi|26554486|ref|NP_758420.1| dimethyladenosine transferase [Mycoplasma penetrans HF-2]
 gi|33516937|sp|Q8EU92|RSMA_MYCPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|26454496|dbj|BAC44824.1| dimethyladenosine transferase [Mycoplasma penetrans HF-2]
          Length = 272

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 137/266 (51%), Gaps = 14/266 (5%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           + +   K    + MGQNFL++ NI KKI +S        V+EIG G G LT+++L    +
Sbjct: 11  SFIKKNKFFASRKMGQNFLINENIKKKIVDSLEIKPDDHVLEIGPGFGALTKIVL-SQTK 69

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            + V+E D++    LK    +    L II  D LK DF++ FN  +  +II+NLPY+I +
Sbjct: 70  NLTVVELDKRLVEFLKQEYKE----LRIINIDVLKFDFKE-FNKDTQYKIISNLPYSISS 124

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           +++F  +        +    L+ QKE+ +RITA+  +  Y   +VL    ++   +FD+S
Sbjct: 125 KIIFKILKYAN----FSQSVLMVQKEMADRITAKVGTKKYNNFTVLLRITSEIKKLFDVS 180

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----E 247
            + FFP P+V STVI F    +      E L+    + F ++RKT+  +LK        E
Sbjct: 181 NNCFFPKPEVDSTVISFERKKDFDFTNFEKLESFLLKCFSQKRKTIFNNLKNYFPKQKIE 240

Query: 248 NLLHQAGIETNLRAENLSIEDFCRIT 273
            + ++  I    R EN+  E + ++ 
Sbjct: 241 EVFNKHSIIPTTRPENIKEELYLKMC 266


>gi|114331217|ref|YP_747439.1| dimethyladenosine transferase [Nitrosomonas eutropha C91]
 gi|122313917|sp|Q0AGQ8|RSMA_NITEC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|114308231|gb|ABI59474.1| dimethyladenosine transferase [Nitrosomonas eutropha C91]
          Length = 256

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 94/261 (36%), Positives = 132/261 (50%), Gaps = 12/261 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           + IP++  GQ+FL+D +I+ +I      L G  +IEIG G G LTQ LL      +  IE
Sbjct: 2   RHIPRRRFGQHFLVDHHIIAEIIHIICPLPGDRMIEIGPGLGALTQPLL-NNLDTLQAIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L      +  +L I   DALK DF         +RI+ NLPYNI T LLF+ 
Sbjct: 61  LDRDIVDYLSR---NYAEKLVIHNVDALKFDFSAL---GEGLRIVGNLPYNISTPLLFHL 114

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                +      +  + Q EV ER+ AQ ++P YGRLS++   R +   M  +    F P
Sbjct: 115 ---SRFSNLIIDMHFMLQLEVVERMVAQPSTPDYGRLSLMLQNRFEMEQMLIVPAEAFNP 171

Query: 198 SPKVTSTVIHFIPHLNP-IPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P+V S ++   P + P IP  LE L   +   AF +RRKTLR +L+         Q  I
Sbjct: 172 PPRVQSAIVCMRPRVVPVIPFGLEKLFGEMVLAAFSQRRKTLRNTLRHYLTIKDFDQLRI 231

Query: 256 ETNLRAENLSIEDFCRITNIL 276
           +  LRAENLS+E +  IT  +
Sbjct: 232 DPGLRAENLSLEQYSAITRHI 252


>gi|108803734|ref|YP_643671.1| dimethyladenosine transferase [Rubrobacter xylanophilus DSM 9941]
 gi|118600896|sp|Q1AXL9|RSMA_RUBXD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|108764977|gb|ABG03859.1| dimethyladenosine transferase [Rubrobacter xylanophilus DSM 9941]
          Length = 262

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 122/261 (46%), Gaps = 13/261 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            PKK +GQ+FL D N   +I  ++G  +   V+EIG G G LT  L    A  V  +E D
Sbjct: 11  RPKKRLGQHFLKDANTA-RIV-AAGLTERDVVLEIGPGRGFLTAFLAER-AGLVHAVEID 67

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               P L+       N + I + DAL+ D+        P R+ ANLPYNI + L+   + 
Sbjct: 68  PDVLPELRRAVGARGN-VRIHEADALRFDYGAL--SPPPNRLAANLPYNIASPLVLRLLE 124

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P  E +  + Q EV  R+TA+  S  YG  +VL    ++  +   +SP VF P P
Sbjct: 125 E---VPSLERMRFMVQLEVALRMTARPGSKDYGAYAVLIQLLSRPEVAHRVSPRVFDPPP 181

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENLLHQAGIE 256
           +V S V+      +  P     +K++   AF  RRK L  +L    R   E  L   G  
Sbjct: 182 RVRSAVVELERRRD-APEDYRGVKELVAAAFRSRRKRLPNNLPGPLRERAEEALAGLGHG 240

Query: 257 TNLRAENLSIEDFCRITNILT 277
            + RAE LS EDF  +   ++
Sbjct: 241 PDARAEELSPEDFVALYRRIS 261


>gi|225717560|gb|ACO14626.1| Probable dimethyladenosine transferase [Caligus clemensi]
          Length = 313

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 130/288 (45%), Gaps = 24/288 (8%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           + ++ ++ +       ++    +GQ+ L +  ++  I E SG     TV+EIG G GNLT
Sbjct: 12  IGSQPNTSEAARGRQGLMFNTSLGQHILKNPAVVDSIIEKSGLRPTDTVLEIGPGTGNLT 71

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIR 120
             LL    ++VIV E D +    L+      P   +LEI+  DA+K +   FF++     
Sbjct: 72  AKLLD-KVKRVIVCEVDPRMVAELQKRFQHSPFKPKLEILVGDAIKTELP-FFDVC---- 125

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
            +AN+PY I + L+F  +      PF+    L+FQ+E   R+ A      Y RLS+ T  
Sbjct: 126 -VANVPYQISSPLVFKLL---LHRPFFRCAVLMFQREFAMRLIAAPGDKLYCRLSINTQL 181

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
            +    +  +  + F P PKV S+V+       P P   +    +T+  F ++ KTL  +
Sbjct: 182 LSTVHHLLKVGRNNFRPPPKVESSVVRIEHKNPPPPINFKEWDGLTRICFVRKNKTLGAA 241

Query: 241 LKRLGGENLLHQAGIETNLR-----AENLSIEDF--CRITNILTDNQD 281
             +      L     + N R      E +  EDF   ++   + D+ D
Sbjct: 242 FSQTPVLLTL-----DKNYRTHLSLNEEMVPEDFSIKKLIEEVLDSID 284


>gi|195341093|ref|XP_002037146.1| GM12757 [Drosophila sechellia]
 gi|194131262|gb|EDW53305.1| GM12757 [Drosophila sechellia]
          Length = 306

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 18/284 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   +    I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +
Sbjct: 8   KKSRIHNDVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KVI  E D +    L+      P   +L ++  D LK +   FF++      IA
Sbjct: 68  LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLHVLIGDFLKAELP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  ER+ A+     Y RLS+ T    +
Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K 
Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237

Query: 244 LGGENLLHQA-GIETNLRAENLSIEDFCRITNI---LTDNQDIA 283
                +L +   +  +LR E   IED  ++ +    + + QD+A
Sbjct: 238 TSVLEMLEKNYKLYRSLRNE--PIEDDFKMQDKVISILEEQDMA 279


>gi|314929244|gb|EFS93075.1| dimethyladenosine transferase [Propionibacterium acnes HL044PA1]
 gi|314972363|gb|EFT16460.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA3]
 gi|328908355|gb|EGG28114.1| dimethyladenosine transferase [Propionibacterium sp. P08]
          Length = 298

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 22/287 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S++ I     + P K  GQNF+ D N +++I   +       VIE+G G G+LT  L
Sbjct: 8   NPASIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLALVGSEDRVIEVGPGLGSLTLGL 67

Query: 66  LTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           L  GA +V+ +E D+     L     +   +   RL+++  DAL V   K    + P  +
Sbjct: 68  LETGA-QVVAVEIDETLANQLPDTIAERMPEAAERLDVVLSDALDV---KAIPGAEPTAL 123

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   +L + ++     P W +  ++ Q EV +R+ A   S  YG  S    W 
Sbjct: 124 VANLPYNVAVPVLLHMLA---MCPQWSTGVVMVQSEVADRLVAAPGSKIYGIPSAKLAWY 180

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP------IPCCLESLKKITQEAFGKRRK 235
            +AT + ++ P VF+P P V S ++       P             + ++   AF  RRK
Sbjct: 181 AEATRVGNVPPTVFWPVPNVDSGLVRITRRRPPQIDGRDPHATRSQVFRVVDAAFASRRK 240

Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            LR +L  L G       L+  AGI+   R E L I D  R+   L 
Sbjct: 241 MLRSALAGLCGGSTAASELITAAGIDPTARGEALDIADLARVAEALA 287


>gi|147919487|ref|YP_686773.1| putative dimethyladenosine rRNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
 gi|110622169|emb|CAJ37447.1| putative dimethyladenosine rRNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
          Length = 260

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 23/269 (8%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            + P K   Q+FL+D  +L +I +++       V+EIGAGPGNLT+ LL   AR V  IE
Sbjct: 2   DLAPDKRKDQHFLIDQAVLHRIVDAAALSSDEVVLEIGAGPGNLTR-LLAQKARHVYTIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D++F   L+       + + +I  +ALKV+F +F       +++ANLPY+I + + F  
Sbjct: 61  MDRRFAEALEADFQG--SNVTVIHGNALKVEFPRF------DKVVANLPYSISSDVTFKL 112

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +S       ++   L++Q+E  +R+ A+     Y RLSV         ++F++S   F P
Sbjct: 113 LSYP-----FKFAILMYQREFAQRMAAKVGEEDYSRLSVTVQHFADVKLLFNVSRRAFNP 167

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL----KRLGGEN---L 249
            P+V STV+   P         E L  K+   AF  RRK L+++L      +G ++   +
Sbjct: 168 QPEVESTVVKLTPRPAGYTVADEELFMKLVTAAFAGRRKKLKKALLNGAHMMGLKDPQSV 227

Query: 250 LHQAGIE-TNLRAENLSIEDFCRITNILT 277
           +     +  + RAE +S E+F  + N + 
Sbjct: 228 ISALPADVLDRRAEQVSPEEFALLANEVA 256


>gi|164655863|ref|XP_001729060.1| hypothetical protein MGL_3848 [Malassezia globosa CBS 7966]
 gi|159102949|gb|EDP41846.1| hypothetical protein MGL_3848 [Malassezia globosa CBS 7966]
          Length = 330

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 119/285 (41%), Gaps = 40/285 (14%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A++V+V+E D +  
Sbjct: 51  RFGQHILKNPLVAQGIVDKANLKPTDTVLEVGPGTGNLTVRILE-KAKRVVVVEMDPRMA 109

Query: 84  PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L       P   +LEI+  D  K D   F        +I+N PY I + L+F  +S  
Sbjct: 110 AELTKRVQGKPEQRKLEIVIGDVCKTDLPYF------DVVISNTPYQISSPLVFKLLSHR 163

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P +    L+FQ+E   R+ A+  SP +GRLS       K   +  ++   F P P+V
Sbjct: 164 ---PLFRCAILMFQREFAMRLVARPGSPLWGRLSANVQLYAKVDHIMKVARGSFRPPPQV 220

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL--------------KRLGGE 247
            S+V+  +P   P P   E    +T+  F +R K LR                 K    E
Sbjct: 221 DSSVVRIVPLNPPPPIKFEEFDGLTRIVFSRRNKVLRACFFGARGVLEMMEANWKTYCAE 280

Query: 248 NLLHQAGIE--------------TNLRAENLSIEDFCRITNILTD 278
           + +   GI               +  RA  L +++   + +   D
Sbjct: 281 HGVSTVGISFPDKVDSVLARLGMSEARAAKLDVDELLTLLSAFHD 325


>gi|14520595|ref|NP_126070.1| dimethyladenosine transferase [Pyrococcus abyssi GE5]
 gi|27151615|sp|Q9V1P8|RSMA_PYRAB RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|5457811|emb|CAB49301.1| ksgA dimethyladenosine transferase [Pyrococcus abyssi GE5]
          Length = 269

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 27/280 (9%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +LS Y I P   +GQ+FL+  +++ K  E +       V+E+G G G LT  L    A+K
Sbjct: 8   LLSKYGIRPNDRIGQHFLIVKDVIDKAIEVAEVSKSDVVLEVGPGLGFLTDELSKR-AKK 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   IL++  S   N +EIIQ DA+KV++  F       ++++N+PY I + 
Sbjct: 67  VFTIELDRRIIEILRNEYS--WNNVEIIQGDAVKVEWPSF------NKVVSNIPYQISSP 118

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
             F  +  +     +E   +++Q E   R+TA+    +Y RLS++T       ++  I  
Sbjct: 119 FTFKLLKME-----FERAVVMYQLEFALRMTAKPGDRNYSRLSLMTQALADVEIVMRIGK 173

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT----LRQSLKRLGGEN 248
             F+P PKV S ++   P  + I       + + +  F  RRK     LR+S   LG ++
Sbjct: 174 GAFYPKPKVDSALVLITPKKDRIELN----ESLVKALFQHRRKVVSKALRESAHMLGIKD 229

Query: 249 LLHQAGI-----ETNLRAENLSIEDFCRITNILTDNQDIA 283
           +     I      +N R  +L+ E+   I   L +++ I+
Sbjct: 230 VKTVKDILSSVPHSNKRVFHLTPEEVKEIEEYLREHRIIS 269


>gi|156740307|ref|YP_001430436.1| dimethyladenosine transferase [Roseiflexus castenholzii DSM 13941]
 gi|156231635|gb|ABU56418.1| dimethyladenosine transferase [Roseiflexus castenholzii DSM 13941]
          Length = 302

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 133/301 (44%), Gaps = 31/301 (10%)

Query: 1   MTMNNKSHSL---KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT  N   SL   +  L    + P + MGQNFL+D   L KI  ++      TVIE+G G
Sbjct: 1   MTSANPYLSLARVRAALHALDLRPSRSMGQNFLIDGAALAKIVNAAQLTSDDTVIEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G LT  L+    R VI +E D +    L+       N L IIQ D L++  E       
Sbjct: 61  LGVLTWELMHR-TRAVIAVELDHRLADRLRAEFRAFSN-LAIIQGDVLRLPPEAILAEHD 118

Query: 118 --------PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
                   P +++ANLPY I +  L +++S    P     + +L Q+EV +RI A+    
Sbjct: 119 PDASSGARPYKVVANLPYAITSAALRHFLSNPLRPAL---MVVLVQREVADRICARPG-- 173

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQ 227
           +   L+       +  ++  I    FFP+P+V STV+       P  +P   E+L ++ +
Sbjct: 174 NLSVLAHAVQIYAEPEIIARIPASCFFPTPEVESTVLRLRIRPQPAVVPDQPEALLRLIK 233

Query: 228 EAFGKRRKTLRQSL-----------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             F   RK L  +L            +    N L  AGI    RAE ++++++  +   L
Sbjct: 234 AGFLHPRKQLGNALPGGMAAMGMKTDKQKILNALTAAGINATRRAETVTLDEWGAVYRAL 293

Query: 277 T 277
            
Sbjct: 294 K 294


>gi|159903252|ref|YP_001550596.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9211]
 gi|226732610|sp|A9B9Y0|RSMA_PROM4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|159888428|gb|ABX08642.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 282

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 124/270 (45%), Gaps = 11/270 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++L D+ IL+KI E++   +   V+EIG G G LT  LL      V  IE
Sbjct: 5   GHSARKRFGQHWLKDVAILEKIVEAAELCENDRVLEIGPGRGALTHKLLNSKVSLVHAIE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      L++    H  R  +   DALK+      +     +++AN+PYNI + LL   
Sbjct: 65  LDTDLVVGLRERF-FHETRFSLKGGDALKISLLP-PDGIEVNKVVANIPYNITSPLLERL 122

Query: 138 ISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           I    + P   +E L LL QKEV +RI A      +  +SV      K+  + D+SP  F
Sbjct: 123 IGKLGFFPETRYERLVLLLQKEVADRILAMPGQSSFSAMSVRVQLLCKSRSVCDVSPKCF 182

Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251
            PSPKV S V+   P            + ++ + + AF  RRK LR +L  +   N L  
Sbjct: 183 KPSPKVHSKVVVIEPFAFSERLNVDIEKRVESLLRTAFLGRRKKLRNTLASIRPLNQLES 242

Query: 252 ---QAGIETNLRAENLSIEDFCRITNILTD 278
              Q GI  N R + +S   +  +   + D
Sbjct: 243 LADQLGISLNQRPQEISPMMWVSLAKRIHD 272


>gi|302530292|ref|ZP_07282634.1| dimethyladenosine transferase [Streptomyces sp. AA4]
 gi|302439187|gb|EFL11003.1| dimethyladenosine transferase [Streptomyces sp. AA4]
          Length = 280

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 128/275 (46%), Gaps = 15/275 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M        ++ +     + P K +GQNF+ D N +++I E  G   G  V+E+G G G+
Sbjct: 1   MVELLGPAEIRGLADELDVRPTKKLGQNFVHDPNTVRRIVELGGVRPGDVVLEVGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           LT  LL  GA +V+ +E D      L     + + +  +RL ++  DAL+V        +
Sbjct: 61  LTLGLLAAGA-QVVAVEIDPVLAARLPRTVAERAPEAADRLTVVGADALRVRAADL--PA 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+ I+ANLPYN+   ++ + ++     P   S  ++ Q EV +R+ A   S  YG  SV
Sbjct: 118 EPVSIVANLPYNVAVPVVLHLLAE---LPSLRSGLVMVQTEVADRMAAGPGSRTYGVPSV 174

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
              W   A  +  +   VF+P P V S ++ F             L  +   AF +RRKT
Sbjct: 175 KLAWYGPARKVAAVPRAVFWPVPNVDSALVSFTRTDPVAGVDRARLFAVVDAAFSQRRKT 234

Query: 237 LRQSLKRLGGE-----NLLHQAGIETNLRAENLSI 266
           LR +L    G       LL +AGI+   R E L +
Sbjct: 235 LRAALAGWAGSAERAGELLAEAGIDPKTRGEQLDV 269


>gi|312371948|gb|EFR20006.1| hypothetical protein AND_20790 [Anopheles darlingi]
          Length = 294

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 12/237 (5%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
             I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +L    +KV+  
Sbjct: 7   LGIVFNKDFGQHILKNPLVITSMLEKAALRPTDVVLEIGPGTGNMTVKILE-KVKKVVAC 65

Query: 77  EKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           E D +    L+          +L+I+  D LK D   FF+I      +AN+PY I +  +
Sbjct: 66  EIDPRLVAELQKRVQGTHLQPKLQILIGDVLKTDLP-FFDIC-----VANMPYQISSPFV 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +      PF+    L+FQ+E  +R+ A+     Y RLS+ T    +  M+  +  + 
Sbjct: 120 FKLL---LHRPFFRCAVLMFQREFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNN 176

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K+      L 
Sbjct: 177 FKPPPKVESSVVRIEPRNPPPPINYTEWDGLTRIAFLRKNKTLAAAFKQTTVLTALE 233


>gi|196005549|ref|XP_002112641.1| hypothetical protein TRIADDRAFT_24833 [Trichoplax adhaerens]
 gi|190584682|gb|EDV24751.1| hypothetical protein TRIADDRAFT_24833 [Trichoplax adhaerens]
          Length = 319

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 25/305 (8%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       +++ ++  + +   K + QNFLL+ NI  KI    G ++   V E+GAGPG 
Sbjct: 1   MIRLPPLPTIRDLIKLHNLSASKQLSQNFLLNSNITNKIVLLDGGVENHQVCEVGAGPGC 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----- 115
           LT+ ++  GA K++ +EKD++F P L  +++    R+ I+  D L  +  K F+      
Sbjct: 61  LTRSIIAGGASKIVAVEKDRRFLPALDILANAVDGRMVIVYADILNYEMIKAFDPVDKKA 120

Query: 116 ----SSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQK 166
               S  ++II NLP++I T LL  W+     +A  +      +TL FQ+EV +RI A+ 
Sbjct: 121 WNDESPKMKIIGNLPFSISTPLLIQWLNLISQNAGPFSLGRIKMTLTFQEEVAQRILAEP 180

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKI 225
            +    RLS++T         F I    F P+PKV S V+ F P + P I     +L+ I
Sbjct: 181 KTSQRSRLSIMTQNYCHVKPGFLIKGSSFVPAPKVNSVVLTFTPRITPLIDIDFTTLEVI 240

Query: 226 TQEAFGKRRKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDFCRIT----NI 275
            +  F  RRK + +  K L   +      L  +A ++  LR + LS E+  R+      +
Sbjct: 241 AKSLFRHRRKFVIKGTKYLFPTDVDLSLKLFEEADVDWKLRPQQLSTEEIQRLCAAYKKV 300

Query: 276 LTDNQ 280
           L D+Q
Sbjct: 301 LLDHQ 305


>gi|21358017|ref|NP_651660.1| CG11837 [Drosophila melanogaster]
 gi|195574637|ref|XP_002105291.1| GD21406 [Drosophila simulans]
 gi|27151493|sp|Q9VAQ5|DIMT1_DROME RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|7301735|gb|AAF56847.1| CG11837 [Drosophila melanogaster]
 gi|16769516|gb|AAL28977.1| LD35950p [Drosophila melanogaster]
 gi|194201218|gb|EDX14794.1| GD21406 [Drosophila simulans]
 gi|220944428|gb|ACL84757.1| CG11837-PA [synthetic construct]
 gi|220954304|gb|ACL89695.1| CG11837-PA [synthetic construct]
          Length = 306

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 132/284 (46%), Gaps = 18/284 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   +    I+  K  GQ+ L +  ++  + E +       V+EIG G GN+T  +
Sbjct: 8   KKSRIHNDVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KVI  E D +    L+      P   +L+++  D LK +   FF++      IA
Sbjct: 68  LER-AKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  ER+ A+     Y RLS+ T    +
Sbjct: 121 NVPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K 
Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237

Query: 244 LGGENLLHQA-GIETNLRAENLSIEDFCRITNI---LTDNQDIA 283
                +L +   +  +LR E   IED  ++ +    + + QD+A
Sbjct: 238 TSVLEMLEKNYKLYRSLRNE--PIEDDFKMQDKVISILEEQDMA 279


>gi|312372402|gb|EFR20370.1| hypothetical protein AND_20209 [Anopheles darlingi]
          Length = 353

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 146/300 (48%), Gaps = 28/300 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ ++  Y++   K + QNFL+D  +  KI  ++G +    V+E+G GPG +T+ +
Sbjct: 20  PLPTIRDLVKLYQLRAIKQLSQNFLMDERLTDKIVRAAGKIRDHHVLEVGPGPGGITRSI 79

Query: 66  LTLGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----- 117
           +    R ++V+EKD++F P   +L ++S     R++I++ D L    E  F         
Sbjct: 80  IRQHPRHLVVVEKDRRFMPTMEMLAEVSQPF-MRMDIVRGDILDYRIEGAFPDCEPHDWM 138

Query: 118 -----PIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKN 167
                P+ +I NLP+ I TRLL NW     +    W     SLTL FQKEV ERI A   
Sbjct: 139 DPVPAPVHLIGNLPFAISTRLLINWLRDMSLRTGAWHYGRASLTLTFQKEVAERIVAPIL 198

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKIT 226
           S    RLSV+    +K  + F IS   F P P+V   V+  +P   P+     ++++K+ 
Sbjct: 199 SDQRCRLSVMNQIWSKPDLRFMISGRAFVPKPEVDVGVVTIVPLQTPLTQVHFDTVEKVI 258

Query: 227 QEAFGKRRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTD 278
           +  F  R+K  R+ +  L    +          ++ ++   R+  LS+++  RI     +
Sbjct: 259 RHIFSMRQKYCRRGVSNLYPPTVRDELTELTFRKSSVDPLSRSFQLSVDECLRIVEAYDE 318


>gi|323449377|gb|EGB05265.1| hypothetical protein AURANDRAFT_60268 [Aureococcus anophagefferens]
          Length = 312

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 111/240 (46%), Gaps = 12/240 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
            S + +   K +GQNFL +  I+  I E +      +V+EIG G GNLT  LL   A+K+
Sbjct: 18  ASSHLLAANKDLGQNFLKNPAIVDAIVERAKLQPTDSVLEIGPGTGNLTVKLLAQ-AKKL 76

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
             +E D++    +       P  +RLE++  D LKV    F         +ANLPYNI +
Sbjct: 77  TCVEFDRRMVREVAKRVENDPRKHRLEMVHGDVLKVALPYF------DVCVANLPYNISS 130

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             LF  ++     P + S  ++FQ+E  +R++A+     Y RLSV T    K T +  + 
Sbjct: 131 PFLFKLLAHR---PHFRSAVIMFQEEFAQRLSAKPGDALYCRLSVNTQLLAKVTQLIKVG 187

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P PKV S V+       P P        + +  F ++ KTLR +         L 
Sbjct: 188 RNNFRPPPKVDSRVVKIEVRNPPPPVNFVEWDGLVKLCFNRKNKTLRSTFTNKKTLADLE 247


>gi|219685175|ref|ZP_03539995.1| dimethyladenosine transferase [Borrelia garinii Far04]
 gi|219673271|gb|EED30290.1| dimethyladenosine transferase [Borrelia garinii Far04]
          Length = 281

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 149/284 (52%), Gaps = 14/284 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K IL   KI P+K  GQN+L++ NI +KI ES    +   + EIG G G
Sbjct: 8   MNINYNSITSIKQILKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLG 67

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL      +   E D ++  IL +   +  N  ++I+ D LK    +  NI    
Sbjct: 68  AMTDILLK-KTNFLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYPNENKNID--- 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + + L  QKE+ +RITA+ NS +Y   +VL  
Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTVLVQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
               A  + DI    F+P+PKV ST +  IP  N I    +   K+ +  F  RRK L+ 
Sbjct: 179 SHFTAIKIIDIGESNFYPAPKVKSTTLKLIPKKNNI-KDFKEFNKLIRTVFSSRRKKLKN 237

Query: 240 SLKR-LGGENLLHQAGIET--NLRAENLSIEDFCRITNILTDNQ 280
           ++   +  + +L +  ++     R EN+S+E+F +I+N LT + 
Sbjct: 238 TIINFIKNKAILEENFLKEYLGKRPENISVEEFIQISNTLTAHH 281


>gi|297193911|ref|ZP_06911309.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720273|gb|EDY64181.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 286

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 126/291 (43%), Gaps = 23/291 (7%)

Query: 1   MTMNNK-----SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55
           M+  +         ++ + +   + P K  GQNF++D N +++I  ++       V+EIG
Sbjct: 1   MSTTDPDALLGPADIRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVKPDDVVVEIG 60

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEK 111
                   + L   A +V+ +E D      L            +R  ++  DA+ V   +
Sbjct: 61  P-GLGSLTLGLLEAADRVVAVEIDDVLAGALPATVAARLPDRASRFSLVHSDAMHV---Q 116

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
                 P  ++ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   +  Y
Sbjct: 117 ELPGPPPTALVANLPYNVAVPVLLHMLDR---FPSIERTLVMVQAEVADRLAAGPGNKVY 173

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEA 229
           G  SV   W ++      I  +VF+P+P V S ++  +   +P+        +  +   A
Sbjct: 174 GVPSVKANWYSEVKRAGSIGRNVFWPAPNVDSGLVSLVRRTSPVATTASRAEVFAVVDAA 233

Query: 230 FGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
           F +RRKTLR +L    G        L  AG+    R E+L++E+F RI   
Sbjct: 234 FAQRRKTLRAALAGWAGSPAAAEAALVAAGVSPQARGESLTVEEFARIAEA 284


>gi|289740727|gb|ADD19111.1| ribosomal RNA adenine dimethylase [Glossina morsitans morsitans]
          Length = 306

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 19/279 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K + L   +    I+  K  GQ+ L +  ++  + E +       ++EIG G GN+T  +
Sbjct: 8   KRNRLHHEVQKQGILFNKEFGQHILKNPLVITSMLEKAAIRSTDVILEIGPGTGNMTVRM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L    +KVI  E D +    L+      P   +L+I+  D LK D   FF++      IA
Sbjct: 68  LERC-KKVIACEIDTRLAAELQKRVQATPMQYKLQILIGDFLKADLP-FFDLC-----IA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      P +    L+FQ+E  +R+ A+     Y RLSV T    +
Sbjct: 121 NIPYQISSPLIFKLL---LHRPLFRCAVLMFQREFAQRLVAKPGEKLYCRLSVNTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ KTL  + K 
Sbjct: 178 VDMLMKVGKNNFKPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRVAFLRKNKTLAAAFKI 237

Query: 244 LGGENLLHQA-GIETNLRA----ENLSIEDFCRITNILT 277
                +L +   +  +LR     EN  ++   ++ NIL 
Sbjct: 238 NSVLEMLEKNYKLHLSLRNKPIEENFDMQ--AKVVNILE 274


>gi|312085629|ref|XP_003144755.1| ribosomal RNA adenine dimethylase [Loa loa]
 gi|307760083|gb|EFO19317.1| ribosomal RNA adenine dimethylase [Loa loa]
          Length = 342

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 150/301 (49%), Gaps = 26/301 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              SLK  L  Y++  KK + QN+L+D+N+ +KI   +   +G  VIEIG GPG++T+ +
Sbjct: 10  PLPSLKNFLYAYRLQAKKILSQNYLMDMNLTRKIVRQAVVKEGDYVIEIGPGPGSITRAI 69

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           L    R++ VIE D +F P L+ +      R+ I + D LK + E+ ++ +         
Sbjct: 70  LETNCRRLDVIEIDHRFIPPLEVLKEASEERMFIHRADILKTNIEQIWSQAGLERVAWEE 129

Query: 117 ---SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNS 168
                  II NLP+NI + L+  ++         W      L L FQ EV ER+ +  +S
Sbjct: 130 DRLPMAHIIGNLPFNIASPLIIKFLREMLYRQGPWSFGRIPLLLTFQMEVAERLCSPVDS 189

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQ 227
           P   R+S+++ + T+  ++F I    F PSPKV   V+ FIP  +P I    E ++K+ +
Sbjct: 190 PFRARISIMSAFVTEPKLLFQIPGRCFVPSPKVNVGVVRFIPRQDPLIKTSFEVVEKVCR 249

Query: 228 EAFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             F  R+K + + ++ L  E        +LL +  I+    A  L +E F  I  +  ++
Sbjct: 250 RVFNYRQKYVVKGIRSLYPEELAKNLADDLLRRCRIDPTTTAICLGVEQFADICYVYEEH 309

Query: 280 Q 280
            
Sbjct: 310 C 310


>gi|322493412|emb|CBZ28699.1| ribosomal RNA adenine dimethylase family protein,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 374

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 113/246 (45%), Gaps = 13/246 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S  +KT  S   I+  K  GQ+ L +  ++  I E +       VIEIG G GNLT+ LL
Sbjct: 57  SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
              A+KVI  E D +    L       P  ++L+II+ + L+ DF  F       + +AN
Sbjct: 117 QT-AKKVIAFEIDPRMMAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV +    + 
Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           + +  IS + F P PKV S+VI   P   P     E    + +  F ++ K      +  
Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPPPDVDFEEWDGLVKMLFSRKNKKSSSIFRTK 285

Query: 245 GGENLL 250
                L
Sbjct: 286 AAVQAL 291


>gi|298246521|ref|ZP_06970327.1| dimethyladenosine transferase [Ktedonobacter racemifer DSM 44963]
 gi|297554002|gb|EFH87867.1| dimethyladenosine transferase [Ktedonobacter racemifer DSM 44963]
          Length = 294

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 135/278 (48%), Gaps = 16/278 (5%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             L+ +L  + + P K  GQNFL+D ++L++I E++       V+E+G+G G LT+ L  
Sbjct: 17  RDLRNLLYAHGMRPNKAFGQNFLIDRSVLQQIVEAAEINANEEVLEVGSGTGVLTRELAQ 76

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             AR+V+ +E ++    +L+      PN +E+++ + L ++ +  F    P +++ANLPY
Sbjct: 77  E-ARRVVAVELERDMLTLLEKTVGDRPN-VELVERNLLFINPQDHFE-HRPYKLVANLPY 133

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I      +++ +   P     L ++ Q EV +RI A         L V   +  K  ++
Sbjct: 134 YITAPTFRHFLESQNPP---RLLVVMVQLEVAQRIVAAPGDL--SVLGVSIQFYGKPRIV 188

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSL---- 241
             +    F+P+PKV S ++    +          +   ++ Q  F ++RK L  SL    
Sbjct: 189 SKVPAQAFYPAPKVDSAILRIDVNDETLLTLEERDRFFRVVQAGFAEKRKQLHNSLTHAL 248

Query: 242 --KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
             K       L QAGIE N RAE LSIE++ ++     
Sbjct: 249 HYKNEVVRACLSQAGIEANRRAEMLSIEEWMQLWRAFE 286


>gi|301110310|ref|XP_002904235.1| dimethyladenosine transferase [Phytophthora infestans T30-4]
 gi|262096361|gb|EEY54413.1| dimethyladenosine transferase [Phytophthora infestans T30-4]
          Length = 312

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 27/266 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P   +GQ+FL +  I+ +I   +        +E+G G GNLT  LL   A++V+ +E D 
Sbjct: 29  PNTNLGQHFLKNPMIVTQIVAKAAIRGTDVCLEVGPGTGNLTVKLLEQ-AKRVVAVEFDP 87

Query: 81  QFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           +    L+      +H N L+II  D ++V    FF++      +ANLPY I +  +F  +
Sbjct: 88  RMVAELQKRIQHTEHINHLQIIHGDVMRVQLP-FFDVC-----VANLPYQISSPFVFKLL 141

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +     P +    ++FQ+E  +R++A+     Y RLSV T    K   +  +  + F P 
Sbjct: 142 AHR---PMFRCAVVMFQEEFAKRLSAKPGDELYCRLSVNTQLLAKVDQLLKVGRNNFRPP 198

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH------- 251
           PKV S V+   P   P P        + +  F ++ KTL           +L        
Sbjct: 199 PKVESRVVRIEPRNPPPPVNFTEWDGMIKIIFNRKNKTLHSCFVTKSVLKILEENYKTYC 258

Query: 252 -------QAGIETNLRAEN-LSIEDF 269
                  ++ I    + E  LS EDF
Sbjct: 259 SLNNELPESDIAMKKKVEEVLSFEDF 284


>gi|313835387|gb|EFS73101.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA2]
          Length = 298

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 22/287 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S++ I     + P K  GQNF+ D N +++I   +       VIE+G G G+LT  L
Sbjct: 8   NPASIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLALVGSEDRVIEVGPGLGSLTLGL 67

Query: 66  LTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           L  GA +V+ +E D+     L     +   +   RL+++  DAL V   K    + P  +
Sbjct: 68  LEPGA-QVVAVEIDETLANQLPDTIAERMPEAAERLDVVLSDALDV---KAIPGAEPTAL 123

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   +L + ++     P W +  ++ Q EV +R+ A   S  YG  S    W 
Sbjct: 124 VANLPYNVAVPVLLHMLA---MCPQWSTGVVMVQSEVADRLVAAPGSKIYGIPSAKLAWY 180

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP------IPCCLESLKKITQEAFGKRRK 235
            +AT + ++ P VF+P P V S ++       P             + ++   AF  RRK
Sbjct: 181 AEATRVGNVPPTVFWPVPNVDSGLVRITRRRPPQIDGRDPHATRSQVFRVVDAAFASRRK 240

Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            LR +L  L G       L+  AGI+   R E L I D  R+   L 
Sbjct: 241 MLRSALAGLCGGSTAASELITAAGIDPTARGEALDIADLARVAEALA 287


>gi|154341407|ref|XP_001566655.1| ribosomal RNA adenine dimethylase family protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134063980|emb|CAM40171.1| putative ribosomal RNA adenine dimethylase family protein
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 366

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 111/245 (45%), Gaps = 13/245 (5%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             ++   S   I+  K  GQ+ L +  ++  I E S       V+EIG G GNLT+ LL 
Sbjct: 57  PGVRAGGSQSGIVFNKGFGQHILKNPLVIAAIVEKSAIKPTDVVVEIGPGTGNLTEKLLQ 116

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
             A+KVI  E D +    L       P  ++L+II+ + L+ DF  F       + +AN+
Sbjct: 117 T-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVANV 169

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV +    + +
Sbjct: 170 PYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARCS 225

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            +  IS + F P PKV S+VI   P   P     E    + +  F ++ K      +   
Sbjct: 226 HLMKISRNSFNPPPKVESSVIRLDPKCPPPDVDFEEWDGLVKMLFNRKNKKASSIFRTKV 285

Query: 246 GENLL 250
               L
Sbjct: 286 AVQAL 290


>gi|309371330|emb|CBX33011.1| hypothetical protein CBG_11970 [Caenorhabditis briggsae AF16]
          Length = 393

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 145/303 (47%), Gaps = 28/303 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +L+  +  Y++  KK + QN+L+D+NI +KIA+ +   +   VIEIG+GPG +T+ +
Sbjct: 7   PLPALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGITRGI 66

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           L  GA ++ V+E D +F P L+ ++    +R+ I   DAL+ +    +            
Sbjct: 67  LEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSSVPW 126

Query: 117 -----SPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITAQK 166
                  + +I NLP+NI + L+  ++   ++           LTL FQ EV +R+ +  
Sbjct: 127 HDSKLPQMHVIGNLPFNIASPLIIKYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPI 186

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKI 225
                 R+S++  +  +  ++F IS   F P P+V   V+ F+P   P+     E L+K+
Sbjct: 187 ACDTRSRISIMAQYVAEPKLVFQISGSCFVPRPQVDVGVVRFVPRKTPLVKTSFEVLEKL 246

Query: 226 TQEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            ++ F  R+K + + LK L          + LL +  I+    +  L +E F  +     
Sbjct: 247 CRQVFHYRQKYVEKGLKTLYPPEMENEMADELLKKCRIDPTTTSIKLGMEQFADLAEGYN 306

Query: 278 DNQ 280
           +  
Sbjct: 307 EQC 309


>gi|307184319|gb|EFN70777.1| Dimethyladenosine transferase 1, mitochondrial [Camponotus
           floridanus]
          Length = 348

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/298 (30%), Positives = 143/298 (47%), Gaps = 26/298 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S++ IL  Y++   K + QNFLLD  ++ KI   SG L G  V+E+G GPG LT+ +
Sbjct: 8   PLPSIRDILKLYRLNAIKRLSQNFLLDQRLIDKIISKSGHLTGSQVLEVGPGPGGLTRSI 67

Query: 66  LTLGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFF--------- 113
           L    ++++V+EKD++F P   +L D       +++II DD  K++ E  F         
Sbjct: 68  LKQVPKRLVVVEKDRRFKPTLDMLADSFGAINGQMDIIYDDITKINLENLFPMEEKRDWD 127

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNS 168
           + +  I II NLP+N+ T L+  W+ A       W      +TL FQKEV ER+ A  + 
Sbjct: 128 DKNPDIYIIGNLPFNVSTPLIIKWLHAIAERRGPWAFGRTKMTLTFQKEVAERLVADVSH 187

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQ 227
               RLSV+    T   + F I    F P P V   V+ F P + P      +  +KIT+
Sbjct: 188 HQRCRLSVMAQTWTFPVLRFIIPGSAFVPKPDVDVGVVSFTPLVKPRTQHDFKFFEKITR 247

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAG--------IETNLRAENLSIEDFCRITNILT 277
             F  R+K   + ++ L   +   + G        ++  LRA  L++ D  R+     
Sbjct: 248 HVFSFRQKYSIRCIETLFPLDCRKELGLMMYKLSDLDPKLRAFQLTVHDIDRLATAYK 305


>gi|118103858|ref|XP_424746.2| PREDICTED: similar to DIMT1L protein [Gallus gallus]
          Length = 259

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 12/229 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I E +       V+E+G G GNLT  +L    +KVI  E D +    
Sbjct: 23  GQHILKNPLVVNSIIEKAALRRTDVVLEVGPGTGNLTVKMLE-KVKKVIACEIDPRLVGE 81

Query: 86  LKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+         N+LEI   D LK +   F         +ANLPY I +  +F  +     
Sbjct: 82  LQKRVQGTCLANKLEIKVGDVLKTELPFF------DACVANLPYQISSPFVFKLL---LH 132

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            PF+    L+FQ+E   R+ A+  S  Y RLS+ T    +   +  +  + F P PKV S
Sbjct: 133 RPFFRCAILMFQREFALRLVAKPGSKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVES 192

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           +V+   P   P P   +    + + AF ++ KTL  + K    E LL  
Sbjct: 193 SVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAVEQLLDH 241


>gi|294155309|ref|YP_003559693.1| dimethyladenosine transferase [Mycoplasma crocodyli MP145]
 gi|291600503|gb|ADE19999.1| dimethyladenosine transferase [Mycoplasma crocodyli MP145]
          Length = 255

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 85/267 (31%), Positives = 123/267 (46%), Gaps = 19/267 (7%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
             +I  KK  GQNFL D NIL KI           V+EIG G G LT+ +L   A+ +  
Sbjct: 2   KKEIFAKKKFGQNFLNDDNILNKIVSIVDL-KNENVLEIGPGRGALTRKIL-QDAKSLTS 59

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            E D+    ILK   +Q     ++++ D L  D   + +      IIAN+PY I T +LF
Sbjct: 60  YEIDRDLVDILKKEFNQK--NFKLVEGDFLNEDISNYKD----TWIIANIPYYITTDILF 113

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +        ++   L+ QKEV ERI AQKNS  Y +LS+   +       F +    F
Sbjct: 114 KILEN---ISSFKGAILMVQKEVAERIVAQKNSQDYSKLSITLQYYATVKKEFIVPSKCF 170

Query: 196 FPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250
            P+P V S +I      N      L    K+    F +RRK L  SLK        +++ 
Sbjct: 171 NPAPNVDSAIISLKFDKNKKWDITLNEFFKL---CFLQRRKKLSYSLKTKFKIEKIKSVF 227

Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277
              G + ++R + LS+ED  ++ N L 
Sbjct: 228 ETLGFDESIRIQQLSLEDILKLFNKLY 254


>gi|71083413|ref|YP_266132.1| dimethyladenosine transferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|119365045|sp|Q4FMR0|RSMA_PELUB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71062526|gb|AAZ21529.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 262

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 92/263 (34%), Positives = 148/263 (56%), Gaps = 9/263 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK +GQNFL+D  +L+KI   +   +   V+EIG G GNLT  +L    +K+ V+EK
Sbjct: 3   VKAKKSLGQNFLIDREVLEKIVSITDITNKE-VLEIGPGSGNLTTYILKKKPKKLYVVEK 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     +LK+   +    ++II DD LKV      +    + +  NLPYNI T +L  WI
Sbjct: 62  DDDLAILLKE---KFDTEIKIINDDILKVSESTISD--QKLSVFGNLPYNISTEILSKWI 116

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                  +++SL L+FQKEV +RI ++ N+ +YGRLS+L+ W+     + DI P  F P 
Sbjct: 117 LNIGSNFWFDSLVLMFQKEVADRIISEFNNSNYGRLSILSSWKLNVKKILDIKPQSFSPR 176

Query: 199 PKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLG--GENLLHQAGI 255
           PK+ S+++ F P  N       ++L+KIT+  F +RRK L++   ++   G+ +  + GI
Sbjct: 177 PKIDSSLLLFTPKENFFKLKDPKNLEKITRIFFSQRRKMLKKPFNQVFDNGKEVAEKFGI 236

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           + NLR +NL  + + ++     D
Sbjct: 237 DLNLRPQNLEPDVYFKLVKEYED 259


>gi|88856859|ref|ZP_01131512.1| dimethyladenosine transferase [marine actinobacterium PHSC20C1]
 gi|88813929|gb|EAR23798.1| dimethyladenosine transferase [marine actinobacterium PHSC20C1]
          Length = 276

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 134/283 (47%), Gaps = 16/283 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+       ++ +     I P K +GQNF++D N +++I +++  + G TV+E+G G G+
Sbjct: 1   MSTLLGPAEIRDLADLLGIQPTKKLGQNFVIDPNTVRRIVKAAHVVSGETVVEVGPGLGS 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSP 118
           LT  LL  GA  V+ +E D++    L    SQ     +L +I DDAL+V          P
Sbjct: 61  LTLGLLETGA-SVVAVEIDKRLAAQLPLTVSQMQPDAQLTVITDDALRVTE----LPDDP 115

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
              +ANLPYN+   +L +++         +   ++ Q EVG R+ A   S  YG  S+  
Sbjct: 116 RVFVANLPYNVSVPVLLHFLE---HFDSLDRGLVMVQAEVGNRVAAGPGSKVYGSPSIKA 172

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTL 237
            W  + +    +S  VF+P P V S ++ F     P      ++   +   AF +RRK L
Sbjct: 173 AWYGEFSTAGLVSRQVFWPVPNVDSVLVRFERREQPGTVEERKATFALVDAAFQQRRKML 232

Query: 238 RQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           RQSL  + G        L  AG+    R E L++ DF  I   
Sbjct: 233 RQSLSSVLGNSTAASERLIAAGVAPTARGEELTVHDFLAIARA 275


>gi|146295340|ref|YP_001179111.1| dimethyladenosine transferase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145408916|gb|ABP65920.1| dimethyladenosine transferase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 250

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 134/256 (52%), Gaps = 13/256 (5%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           ++D NI++KI   +       V+EIGAGPG LT  L +  A+KV  +E D++   +LK++
Sbjct: 1   MIDENIVRKIVNFAKIDQKE-VLEIGAGPGTLTTFL-SQKAKKVFAVEIDKKILNVLKEV 58

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
                N +EII  D L+++ +     +  + ++ NLPY + +++LF          + ES
Sbjct: 59  CQNLSN-VEIINQDFLELNVKNL-TSTQKLCVVGNLPYYVTSQILFKLFEERN---YIES 113

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
            T++ QKEV +R+ A+  S  YG L+V   +  K    F +S +VFFP P+V STV+   
Sbjct: 114 FTIMVQKEVAQRLLAKPGSKDYGILTVAMNFYCKVEDFFYVSKNVFFPRPEVDSTVLKVS 173

Query: 210 PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG------ENLLHQAGIETNLRAEN 263
              +      +   KI    F  RRKT+  SL    G      +++L +  ++ NLRAE+
Sbjct: 174 FKEDIPDVDEKKFFKIVHACFSTRRKTILNSLSNSLGIEKAELKHILEKTSLQENLRAED 233

Query: 264 LSIEDFCRITNILTDN 279
           LS+E F R+   L   
Sbjct: 234 LSLEHFVRLYKELESR 249


>gi|281204745|gb|EFA78940.1| dimethyladenosine transferase [Polysphondylium pallidum PN500]
          Length = 306

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 76/244 (31%), Positives = 113/244 (46%), Gaps = 12/244 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + ++ H++    K  GQ+ L +  I+  I + S      TV+EIG G GNLT  LL    
Sbjct: 22  QKVVRHHEFQMNKTFGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLESC- 80

Query: 71  RKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI +E D +    L+   +   + + LEII  D LKVD   F         +AN+PY 
Sbjct: 81  KKVIAVEVDPRMAAELQKRVATTPYASHLEIILGDFLKVDLPYF------DVCVANVPYQ 134

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L F  ++     P + +  L+FQKE   R+ A      Y RLSV T   +K T + 
Sbjct: 135 ISSPLTFKLLAHR---PVFRTAVLMFQKEFALRLAASPGDSLYCRLSVNTQLLSKVTHLM 191

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            +  + F P PKV S V+   P   P P        + +  F ++ KTL    K      
Sbjct: 192 KVGKNNFLPPPKVESAVVKIQPFNPPPPINFIEWDGLIKLCFSRKNKTLPAIFKVNSVIE 251

Query: 249 LLHQ 252
           +L+Q
Sbjct: 252 MLNQ 255


>gi|229816446|ref|ZP_04446747.1| hypothetical protein COLINT_03499 [Collinsella intestinalis DSM
           13280]
 gi|229807988|gb|EEP43789.1| hypothetical protein COLINT_03499 [Collinsella intestinalis DSM
           13280]
          Length = 321

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 128/294 (43%), Gaps = 21/294 (7%)

Query: 1   MTMN--NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           MT +      + + +L  + +  K  +GQNFL+D +++++I   +       V+E+G G 
Sbjct: 28  MTTSPLANPTATREMLEAFGLATKHRLGQNFLIDNHVIERIMALAELTGSERVLEVGPGI 87

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--IS 116
           G LT  L+   AR V  IE D +  P+L   +  H N    I  DAL V           
Sbjct: 88  GTLTLALVQEAAR-VTSIEMDTELEPVLSAHAMDHSN-FRFIMGDALAVPPVAIAEALDG 145

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P  ++ANLPYN+   ++  +       P      ++ QKEV +RI A   +  YG  +V
Sbjct: 146 EPELLVANLPYNVAATIILQFFQTM---PSLRRAVVMVQKEVADRIAAAPGTKAYGAYTV 202

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-------LNPIPCCLESLKKITQEA 229
                 + T  F++ P  F P+P V S V+                P    ++ ++   A
Sbjct: 203 KLSLYGEVTGRFEVPPRCFMPAPHVDSAVVRIDRVDVSDAEGEGAAPADAAAVARVVDAA 262

Query: 230 FGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           F +RRKT+R S+   G +           GI    RAE L+ EDF  +   LT 
Sbjct: 263 FAQRRKTIRNSMSSNGFDKDALDAAFEACGISPTARAEALTTEDFIALAASLTS 316


>gi|194388854|dbj|BAG61444.1| unnamed protein product [Homo sapiens]
          Length = 243

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 86  LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 139

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 140 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 196

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K
Sbjct: 197 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243


>gi|303245325|ref|ZP_07331609.1| dimethyladenosine transferase [Desulfovibrio fructosovorans JJ]
 gi|302493174|gb|EFL53036.1| dimethyladenosine transferase [Desulfovibrio fructosovorans JJ]
          Length = 283

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 118/262 (45%), Gaps = 11/262 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             K+ +GQNFL D N   KI  + G   G TVIEIG G G LT ++   G    + +EKD
Sbjct: 24  RAKRSLGQNFLSDPNTAAKIVSACGIAAGDTVIEIGPGRGALTGLIAAAGPSSFLALEKD 83

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           ++    L          L     DAL+ D+ +   +S  +RII NLPYNI + LL++  +
Sbjct: 84  RELAAHLSRTHPSLAVALT----DALRQDWSRLDRLSGNVRIIGNLPYNIASPLLWDLCA 139

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             T    +     + Q EV  R+ A      YG LS       +    F + P VF P P
Sbjct: 140 GAT---RFTRAAFMVQHEVALRLCAGPGGREYGALSAWIASHVRVAYCFKVPPTVFRPRP 196

Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG---ENLLHQAGI 255
           KV S V+   P   +  P    +L K+ +  F KRRK L   LK   G   ++ L   GI
Sbjct: 197 KVDSAVVAMTPLPLSDRPAEPLALAKLLKTLFSKRRKQLGGILKAWRGPELDDWLAGQGI 256

Query: 256 ETNLRAENLSIEDFCRITNILT 277
               R E L+ +    +  +L 
Sbjct: 257 RLTDRPETLAPKQLAGLAEMLK 278


>gi|282856259|ref|ZP_06265542.1| dimethyladenosine transferase [Pyramidobacter piscolens W5455]
 gi|282586018|gb|EFB91303.1| dimethyladenosine transferase [Pyramidobacter piscolens W5455]
          Length = 269

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 121/259 (46%), Gaps = 8/259 (3%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQNFL +  + ++  E+ G      V+EIG G G LT+ LL    R V  +E D++  
Sbjct: 10  SLGQNFLNNPAVARRCLEAGGLNSEDVVLEIGPGQGALTRALLQSPCRFVHALEIDRRLA 69

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           P L+ + + HP R EI   DAL  D  + F +  P +++AN+PYNI T L++  +  +  
Sbjct: 70  PWLEPLRAGHPGRFEISWGDALSADLRELFPL--PNKVLANIPYNITTELIWKIL-VELG 126

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P   E L LL QKE  +R+ A   +     L +     +    +  ++P  F P PKV S
Sbjct: 127 PRRLERLILLVQKEAADRLNAPPATKGRSPLGITLEQMSAVRTLMKVAPGSFNPPPKVWS 186

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGIETN 258
            +I      N         +++   AF +RRK L  +L   G        +L  AGI+  
Sbjct: 187 ALISIDLEENLDLAASPPWRRLLAAAFAQRRKKLANNLAAAGYGKDRIATILSSAGIDPM 246

Query: 259 LRAENLSIEDFCRITNILT 277
            RAE L+   +  +     
Sbjct: 247 SRAEELTASQWRALYQEFA 265


>gi|289704908|ref|ZP_06501325.1| dimethyladenosine transferase [Micrococcus luteus SK58]
 gi|289558404|gb|EFD51678.1| dimethyladenosine transferase [Micrococcus luteus SK58]
          Length = 307

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 122/285 (42%), Gaps = 20/285 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
            +  ++ I +   + P K  GQNF++D N +++I +++       V+EIG        + 
Sbjct: 15  SAADVRRIAAELDLRPTKQWGQNFVIDPNTIRRIVQAADVTADEHVLEIGP-GLGSLTLG 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISS---- 117
           L   A  V  +E D      L   +++      + L ++  DA+ +  +    +      
Sbjct: 74  LLDAAAAVTAVEIDPVTAARLPRTAAEFRPGAEDALAVLHADAMTLSEQALAEVRPAAAV 133

Query: 118 --PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
             P  ++ANLPYN+   +L + ++     P      ++ Q+EV +R+ A   S  YG  S
Sbjct: 134 GGPTALVANLPYNVAVPVLLHALA---VLPGLRHGLVMVQEEVADRLAAGPGSKVYGVPS 190

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRR 234
               W         +   VF+P+P++ S ++ F     P        +  +   AF +RR
Sbjct: 191 AKAAWYADVRKAGTVGTQVFWPAPRIHSGLVAFTRREPPTGGAPRREVFAVVDAAFAQRR 250

Query: 235 KTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           KTLR +L    G     E+ L  AG++   R E L I  F RI  
Sbjct: 251 KTLRAALASWAGSPQAAEDALVAAGVDPRARGEALDIAAFARIAE 295


>gi|332019925|gb|EGI60385.1| Dimethyladenosine transferase 1, mitochondrial [Acromyrmex
           echinatior]
          Length = 351

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 141/298 (47%), Gaps = 26/298 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ IL  Y +   K + QNFLLD N+ KKI   +G++ G  V+E+G GPG LT+ +
Sbjct: 8   PLPTIRDILKLYNLSAIKRLSQNFLLDENLTKKIVAKAGNISGGQVLEVGPGPGGLTRSI 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFF--------- 113
           L     +++V+EKD++F P L+ ++        +++II DD LK + E  F         
Sbjct: 68  LKKTPERLVVVEKDKRFKPTLEMLADSFGAINGKMDIIYDDILKTNIESLFPLEKKRNWN 127

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNS 168
           +    I +I NLP+++ T L+  W+ A       W      +TL FQKEV ER+ A    
Sbjct: 128 DKPPDIFVIGNLPFSLSTHLIIQWLHAISEQRGPWAFGRTKMTLTFQKEVAERLVAPPMG 187

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQ 227
               RLSV+    T   + F I    F P P V   V+ F P + P      +  + IT+
Sbjct: 188 DQRCRLSVMAQTWTFPVLRFIIPGEAFVPKPDVDVGVVSFTPLVKPRTQYDFKFFEMITR 247

Query: 228 EAFGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILT 277
             F  R+K   + ++ L  +         +   A +E  L+   L+IED  ++     
Sbjct: 248 HIFNFRQKYSIRCIETLFPKEHRKDLGLMMYKLADLEPTLKPTQLTIEDINKLATAYK 305


>gi|221195710|ref|ZP_03568764.1| dimethyladenosine transferase [Atopobium rimae ATCC 49626]
 gi|221184476|gb|EEE16869.1| dimethyladenosine transferase [Atopobium rimae ATCC 49626]
          Length = 328

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 130/306 (42%), Gaps = 37/306 (12%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              + +  L  + +  K  +GQNFL++ NI++KI   +       V+E+G G G LT  +
Sbjct: 14  NPRATRETLEAFGLATKHRLGQNFLVEDNIIRKIIRLAELTSDDVVLEVGPGLGTLTVAM 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNIS-------- 116
           L    R V  IE D++   +L     + H +   +   DALK   +   +          
Sbjct: 74  LDY-VRAVCSIEADRELEGVLAATCKEPHQDSFVLCMGDALKATPQLVGDAYASLGVFAD 132

Query: 117 -----------SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
                       P + ++NLPY +   L+  +    T     E   ++ Q EV +RI A+
Sbjct: 133 TQGKEASGALIGPNKFVSNLPYQVAATLILLFFQEFT---TLEQAVVMVQAEVADRIAAK 189

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCC----- 218
             +  YG  +       + +  F+++P  F P P+V S V+     P  +P         
Sbjct: 190 PGTKAYGAYTAKLALYAQVSGRFEVAPGNFMPPPRVNSAVVRLERAPMTDPSGTSVLTSE 249

Query: 219 -LESLKKITQEAFGKRRKTLRQS-----LKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272
            L  + ++   AF +RRKT+R S      K+   E     A IE  +RAE L ++DF R+
Sbjct: 250 QLAWVARVIDAAFAQRRKTIRNSMGASGFKKDTLEKAFLAAHIEPTVRAEALGVKDFVRL 309

Query: 273 TNILTD 278
              L +
Sbjct: 310 AMALAE 315


>gi|212702270|ref|ZP_03310398.1| hypothetical protein DESPIG_00281 [Desulfovibrio piger ATCC 29098]
 gi|212674333|gb|EEB34816.1| hypothetical protein DESPIG_00281 [Desulfovibrio piger ATCC 29098]
          Length = 272

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 87/268 (32%), Positives = 130/268 (48%), Gaps = 15/268 (5%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK +GQ+FL   +I  +IA      D   VIEIG GPG LT+ +      +++++EKD
Sbjct: 8   KAKKSLGQHFLRHESICNRIASLLLPKDTDNVIEIGPGPGALTRAIEAQPHARLVLLEKD 67

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             +    + + S    R + +  DAL+ D+ +     +P +II NLPYN+ + ++++  S
Sbjct: 68  SHWAAERQRLGSA---RTQAVLTDALRFDWSRI-TPDNPWKIIGNLPYNVASPMMWDLFS 123

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             T          + QKEVG+R+ A   + HYG LSV      +  M F + P  F P P
Sbjct: 124 RAT---GLVRAAFMVQKEVGQRLAAGPGNGHYGALSVWVQSFARPCMEFIVGPGAFSPPP 180

Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAG 254
           KV S V+ F P   +  P   + L  + +  F +RRK L    +R      L     QAG
Sbjct: 181 KVDSAVLSFEPLPLDQRPDRPDLLALVIKVCFQQRRKQLGSIARRCPLAPWLSAAIEQAG 240

Query: 255 IETNLRAENLSIEDFCRITNI---LTDN 279
           I   LR E L++ DF  I+     L DN
Sbjct: 241 ITPTLRPEQLTVADFQHISRFGASLLDN 268


>gi|320107650|ref|YP_004183240.1| dimethyladenosine transferase [Terriglobus saanensis SP1PR4]
 gi|319926171|gb|ADV83246.1| dimethyladenosine transferase [Terriglobus saanensis SP1PR4]
          Length = 264

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 13/266 (4%)

Query: 20  IPKK-YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            P+K  +GQNFL+D     +IA++ G +   TV+EIG G G++T +L    A+K+I IE 
Sbjct: 3   QPRKPKLGQNFLVDDGARHRIADALGDVSQRTVLEIGPGHGSITSILAER-AKKLICIEL 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   P L+     HPN +EII+ D L  DF           ++ NLPY I + +L +  
Sbjct: 62  DRSLAPELRFKFRNHPN-VEIIEADVLHADFAALLGEDETADLVGNLPYYITSDILLHLY 120

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +            ++ Q+EV +RI+A   +  +G LS  +        +F + P  F P 
Sbjct: 121 AQSE---RLRMAVVMMQREVADRISASPGTRDFGLLSATSQMYADVENLFTLPPEAFSPP 177

Query: 199 PKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NLLH 251
           P V S+V+     P    +    +      +  F ++RKTL  +L+  G           
Sbjct: 178 PDVHSSVLRLTFAPRFAELHVEAKPFDAFLKMCFQQKRKTLSNNLRAGGVSPERIAAACA 237

Query: 252 QAGIETNLRAENLSIEDFCRITNILT 277
           Q  +   +RAE +++E    +   L 
Sbjct: 238 QTDVSPTVRAEAMTLEALASMHRELR 263


>gi|298529691|ref|ZP_07017094.1| dimethyladenosine transferase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511127|gb|EFI35030.1| dimethyladenosine transferase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 258

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 88/260 (33%), Positives = 130/260 (50%), Gaps = 14/260 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQNFL D+NI +KI ++        V+EIG G G LT  LL   A  V+ +EKD 
Sbjct: 6   AKKSLGQNFLQDMNIARKIVDALEPGHKDRVLEIGPGKGVLT-ALLADRAGLVLGVEKDY 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L     + P  L+ +  DAL++D+ +  +    ++II NLPYNI   LL++    
Sbjct: 65  ----FLTFALDRCPG-LQAVNMDALQLDWSRL-DRWPGLKIIGNLPYNIAQTLLWDM--- 115

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 ++   ++ QKEV +RITA      YG LS+     T   ++F++SP VF P P 
Sbjct: 116 AAGCRSFDRAVVMVQKEVAQRITAGPGGKEYGALSIWLQSFTTPRVLFNVSPGVFRPRPS 175

Query: 201 VTSTVIHFIPH-LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN---LLHQAGIE 256
           V S+V+   P   + I      L ++ +  F  RRK L + LK    +     L Q G++
Sbjct: 176 VDSSVLELRPLPADKIFFVPRDLARVVKTMFQNRRKQLGRILKTYWNDRRKIALEQCGLD 235

Query: 257 TNLRAENLSIEDFCRITNIL 276
              R E LS EDF  ++  L
Sbjct: 236 PRARPEQLSPEDFQGLSKCL 255


>gi|322435995|ref|YP_004218207.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX9]
 gi|321163722|gb|ADW69427.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX9]
          Length = 271

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 126/261 (48%), Gaps = 11/261 (4%)

Query: 22  KK-YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           +K  +GQNFL+D +   +IA S G L   T++EIG G G +T++L T   R++I +E D+
Sbjct: 5   RKPKLGQNFLVDDDARHRIAGSLGDLSTRTIVEIGPGHGAITEILATRC-RRLIALELDR 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L     ++PN +++I+ D LK DF         + +I NLPY I + +L +  +A
Sbjct: 64  SLAAELTFRFRENPN-VQVIETDVLKFDFASIAEEGETLDVIGNLPYYITSDILLHLFAA 122

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    +    Q+EV +R++A      YG LS  T    +   +F + P  F P P 
Sbjct: 123 APLLRRAALM---MQREVADRVSAHPGVRDYGLLSASTQMYAQVDNLFTLPPAAFNPPPD 179

Query: 201 VTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQ--AGI 255
           V STV+   F P    +        +  ++ F ++RKTL  +L+  G     L Q  A I
Sbjct: 180 VFSTVLRLSFAPRFTELGVDPIGFDRFLRKCFAQKRKTLHNNLRVAGYSPEALAQWPATI 239

Query: 256 ETNLRAENLSIEDFCRITNIL 276
               RAE LS+E    +   L
Sbjct: 240 PPQARAEQLSLEQMSTLYGAL 260


>gi|20806642|ref|NP_621813.1| dimethyladenosine transferase (rRNA methylation)
           [Thermoanaerobacter tengcongensis MB4]
 gi|27151574|sp|Q8RDC8|RSMA_THETN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|20515090|gb|AAM23417.1| Dimethyladenosine transferase (rRNA methylation)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 268

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 142/269 (52%), Gaps = 16/269 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNF+ D N+L KI  +SG  +   V+E+G G G LT+ L     +KV+  E 
Sbjct: 1   MKAKKKWGQNFIFDKNLLSKIVRASGVGEEDFVLEVGTGHGGLTEELAK-KVKKVVSFEI 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLF 135
           D++ F + ++    + N + II +D L+VD  +        +  +++ANLPY I + ++ 
Sbjct: 60  DKELFEMSREKLKIYKNVV-IINEDILEVDLLEIAQEHFDGNSFKVVANLPYYITSPIIM 118

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +         + +T+L QKEV ERI A   +  YG L+V   ++ K  ++F++ P VF
Sbjct: 119 KMLDCK----LVKEMTVLVQKEVAERICALPGTKDYGMLTVFVNFKAKPEILFNLPPKVF 174

Query: 196 FPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLG-GENLLHQ 252
            P PKV S+++    +  P+      +   ++ + AFG+RRK L  SLK LG  + +LH+
Sbjct: 175 VPPPKVESSLLKLKVYDKPLVEVKDEKLFSEVVRAAFGQRRKVLSNSLKVLGFSKEVLHE 234

Query: 253 ----AGIETNLRAENLSIEDFCRITNILT 277
                GI    R E LSI+ F  + N L 
Sbjct: 235 TLLKVGISPQARGETLSIDQFANLANALY 263


>gi|50842010|ref|YP_055237.1| dimethyladenosine transferase [Propionibacterium acnes KPA171202]
 gi|289424169|ref|ZP_06425952.1| dimethyladenosine transferase [Propionibacterium acnes SK187]
 gi|289428439|ref|ZP_06430125.1| dimethyladenosine transferase [Propionibacterium acnes J165]
 gi|295130092|ref|YP_003580755.1| dimethyladenosine transferase [Propionibacterium acnes SK137]
 gi|62900512|sp|Q6AAD7|RSMA_PROAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|50839612|gb|AAT82279.1| dimethyladenosine transferase [Propionibacterium acnes KPA171202]
 gi|289154866|gb|EFD03548.1| dimethyladenosine transferase [Propionibacterium acnes SK187]
 gi|289158411|gb|EFD06628.1| dimethyladenosine transferase [Propionibacterium acnes J165]
 gi|291376481|gb|ADE00336.1| dimethyladenosine transferase [Propionibacterium acnes SK137]
 gi|313765357|gb|EFS36721.1| dimethyladenosine transferase [Propionibacterium acnes HL013PA1]
 gi|313772654|gb|EFS38620.1| dimethyladenosine transferase [Propionibacterium acnes HL074PA1]
 gi|313792880|gb|EFS40947.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA1]
 gi|313802667|gb|EFS43889.1| dimethyladenosine transferase [Propionibacterium acnes HL110PA2]
 gi|313806680|gb|EFS45187.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA2]
 gi|313810877|gb|EFS48591.1| dimethyladenosine transferase [Propionibacterium acnes HL083PA1]
 gi|313814612|gb|EFS52326.1| dimethyladenosine transferase [Propionibacterium acnes HL025PA1]
 gi|313815236|gb|EFS52950.1| dimethyladenosine transferase [Propionibacterium acnes HL059PA1]
 gi|313817223|gb|EFS54937.1| dimethyladenosine transferase [Propionibacterium acnes HL046PA2]
 gi|313821715|gb|EFS59429.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA1]
 gi|313824394|gb|EFS62108.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA2]
 gi|313826751|gb|EFS64465.1| dimethyladenosine transferase [Propionibacterium acnes HL063PA1]
 gi|313828541|gb|EFS66255.1| dimethyladenosine transferase [Propionibacterium acnes HL063PA2]
 gi|313831996|gb|EFS69710.1| dimethyladenosine transferase [Propionibacterium acnes HL007PA1]
 gi|313834464|gb|EFS72178.1| dimethyladenosine transferase [Propionibacterium acnes HL056PA1]
 gi|313840303|gb|EFS78017.1| dimethyladenosine transferase [Propionibacterium acnes HL086PA1]
 gi|314916000|gb|EFS79831.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA4]
 gi|314916905|gb|EFS80736.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA1]
 gi|314921546|gb|EFS85377.1| dimethyladenosine transferase [Propionibacterium acnes HL050PA3]
 gi|314926820|gb|EFS90651.1| dimethyladenosine transferase [Propionibacterium acnes HL036PA3]
 gi|314931130|gb|EFS94961.1| dimethyladenosine transferase [Propionibacterium acnes HL067PA1]
 gi|314954813|gb|EFS99219.1| dimethyladenosine transferase [Propionibacterium acnes HL027PA1]
 gi|314958979|gb|EFT03081.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA1]
 gi|314961274|gb|EFT05375.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA2]
 gi|314964298|gb|EFT08398.1| dimethyladenosine transferase [Propionibacterium acnes HL082PA1]
 gi|314969398|gb|EFT13496.1| dimethyladenosine transferase [Propionibacterium acnes HL037PA1]
 gi|314974466|gb|EFT18561.1| dimethyladenosine transferase [Propionibacterium acnes HL053PA1]
 gi|314977344|gb|EFT21439.1| dimethyladenosine transferase [Propionibacterium acnes HL045PA1]
 gi|314980500|gb|EFT24594.1| dimethyladenosine transferase [Propionibacterium acnes HL072PA2]
 gi|314985557|gb|EFT29649.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA1]
 gi|314987513|gb|EFT31604.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA2]
 gi|314989021|gb|EFT33112.1| dimethyladenosine transferase [Propionibacterium acnes HL005PA3]
 gi|315078686|gb|EFT50717.1| dimethyladenosine transferase [Propionibacterium acnes HL053PA2]
 gi|315081854|gb|EFT53830.1| dimethyladenosine transferase [Propionibacterium acnes HL078PA1]
 gi|315082653|gb|EFT54629.1| dimethyladenosine transferase [Propionibacterium acnes HL027PA2]
 gi|315086362|gb|EFT58338.1| dimethyladenosine transferase [Propionibacterium acnes HL002PA3]
 gi|315087610|gb|EFT59586.1| dimethyladenosine transferase [Propionibacterium acnes HL072PA1]
 gi|315097535|gb|EFT69511.1| dimethyladenosine transferase [Propionibacterium acnes HL038PA1]
 gi|315099754|gb|EFT71730.1| dimethyladenosine transferase [Propionibacterium acnes HL059PA2]
 gi|315101941|gb|EFT73917.1| dimethyladenosine transferase [Propionibacterium acnes HL046PA1]
 gi|315106552|gb|EFT78528.1| dimethyladenosine transferase [Propionibacterium acnes HL030PA1]
 gi|315110340|gb|EFT82316.1| dimethyladenosine transferase [Propionibacterium acnes HL030PA2]
 gi|327331611|gb|EGE73350.1| dimethyladenosine transferase [Propionibacterium acnes HL096PA2]
 gi|327333594|gb|EGE75314.1| dimethyladenosine transferase [Propionibacterium acnes HL096PA3]
 gi|327445378|gb|EGE92032.1| dimethyladenosine transferase [Propionibacterium acnes HL013PA2]
 gi|327446992|gb|EGE93646.1| dimethyladenosine transferase [Propionibacterium acnes HL043PA1]
 gi|327449971|gb|EGE96625.1| dimethyladenosine transferase [Propionibacterium acnes HL043PA2]
 gi|327454815|gb|EGF01470.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA3]
 gi|327455672|gb|EGF02327.1| dimethyladenosine transferase [Propionibacterium acnes HL083PA2]
 gi|327456839|gb|EGF03494.1| dimethyladenosine transferase [Propionibacterium acnes HL092PA1]
 gi|328755871|gb|EGF69487.1| dimethyladenosine transferase [Propionibacterium acnes HL087PA1]
 gi|328756654|gb|EGF70270.1| dimethyladenosine transferase [Propionibacterium acnes HL025PA2]
 gi|328758625|gb|EGF72241.1| dimethyladenosine transferase [Propionibacterium acnes HL020PA1]
 gi|328761742|gb|EGF75257.1| dimethyladenosine transferase [Propionibacterium acnes HL099PA1]
 gi|332674932|gb|AEE71748.1| ribosomal RNA small subunit methyltransferase A [Propionibacterium
           acnes 266]
          Length = 298

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 22/287 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S++ I     + P K  GQNF+ D N +++I   +       VIE+G G G+LT  L
Sbjct: 8   NPASIRRIADQIGLRPTKTRGQNFVHDANTVRRIVSLAQVGAADRVIEVGPGLGSLTLGL 67

Query: 66  LTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           L  GA +V+ IE D+     L     +       RLE++  DAL V   K    + P  +
Sbjct: 68  LETGA-EVVAIEIDEVLANQLPGTVAERMPGAAERLEVVLSDALDV---KVIPGAEPTAL 123

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPYN+   +L + ++     P W +  ++ Q EV +R+ A   S  YG  S    W 
Sbjct: 124 VANLPYNVAVPVLLHMLA---ICPQWSTGVVMVQSEVADRLVAAPGSKIYGVPSAKLAWY 180

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE------SLKKITQEAFGKRRK 235
            +A  + ++ P VF+P P V S ++       P     +       + ++   AF  RRK
Sbjct: 181 AEAIRVGNVPPTVFWPVPNVDSGLVRITRRRPPHVDGRDPRVTRSQVFRVVDAAFASRRK 240

Query: 236 TLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            LR +L  L G       L+  AGI+   R E L I D  R+   L 
Sbjct: 241 MLRSALAGLCGGSMAASELITAAGIDPTARGEALDIGDLARVVEALA 287


>gi|330752527|emb|CBL87475.1| dimethyladenosine transferase [uncultured Sphingobacteria
           bacterium]
          Length = 260

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 125/268 (46%), Gaps = 20/268 (7%)

Query: 19  IIPK--KYMGQNFLLDLNILKKIAESSGSLDG----ITVIEIGAGPGNLTQMLLTLGARK 72
             PK  K  GQ+FL+D  +L+ I  +    +       +IEIG G G LTQ  +      
Sbjct: 3   HTPKHNKAFGQHFLVDQGVLESIVAAIQKEEQGVSVDHLIEIGPGDGALTQFFVDQP--N 60

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
              +E D ++   L +       +  I   D L+ +  + F    P+ +  N PYNI ++
Sbjct: 61  FSALEIDSRWHRRLVERYPASEEK--IHLADVLRTNLLEKFE--PPMAVFGNFPYNISSQ 116

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++F  +      P+   +  +FQKEV  R+ A+  S  YG  SVLT    +  ++FDI+ 
Sbjct: 117 IVFKILDNREHVPW---VVGMFQKEVAYRLAAKHGSKVYGVTSVLTQAYYEVDILFDIAS 173

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
             F P PKV S+V+    +   +P C   +L+ + + AFG+RRK LR SLK L   +   
Sbjct: 174 SSFDPPPKVESSVLVMRRYRTDMPNCTYGALRHVVKTAFGQRRKMLRNSLKFLDIAHREE 233

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
                  +R E L +E F  +  + +  
Sbjct: 234 LL----TMRPEQLPLETFIELAELYSKQ 257


>gi|42526590|ref|NP_971688.1| dimethyladenosine transferase [Treponema denticola ATCC 35405]
 gi|62900552|sp|Q73NS2|RSMA_TREDE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|41816783|gb|AAS11569.1| dimethyladenosine transferase [Treponema denticola ATCC 35405]
          Length = 293

 Score =  225 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 14/282 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    LK++L       +K  GQNFL+D    + +        G  V E+G G G +T +
Sbjct: 13  DSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLTLDKGTRVWEVGPGLGAMTYL 72

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           LL  G   +   E D+ F  +LK I  ++      +I+ D  K           P     
Sbjct: 73  LLEKGVH-LTAFEIDKGFISLLKKIFLENSKQNFTLIEGDVQKNWLPYLIEHGKPNVFFG 131

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYNI + L+ + + A      ++++    QKE  ERITA+  + +Y   SVL     +
Sbjct: 132 NLPYNIASDLIASTVEAGV---VFDTMLFTVQKEAAERITARPGNKNYTAFSVLCSLFYE 188

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLK 242
             ++  I    F+P P V S  + F            +   KI +  F  RRK ++ +L 
Sbjct: 189 CKIVKTIPASAFWPQPNVESAAVLFKAKKEFAEYKNFKLFIKIVKALFSSRRKNIKNNLG 248

Query: 243 RLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276
                N        +L ++G+  NLRAE+L++ DF  +++I+
Sbjct: 249 SWMKSNGYGDKIDLVLERSGLSGNLRAESLALYDFLLLSDII 290


>gi|89519294|gb|ABD75772.1| hypothetical protein [uncultured bacterium]
          Length = 731

 Score =  225 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 120/227 (52%), Gaps = 9/227 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK++GQ+FL + ++ ++I ++     G TV+EIG+G G LT+ L+ L   +++ +E 
Sbjct: 23  VRPKKHLGQHFLTNRSVSRRIVDALRYRPGDTVLEIGSGKGILTEPLMELDI-QLVTVEI 81

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           DQ+    L D        L  IQDD LKVD ++      P  II N PYNI +++ F  +
Sbjct: 82  DQESIRYLLDKWPDLKGSL--IQDDFLKVDLQRI--CGRPFHIIGNFPYNISSQIFFRIL 137

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +     S+  + QKEV +RI +   S  YG LSVL         +F + P  FFP 
Sbjct: 138 E---YRHLVTSVVCMVQKEVADRIASPPGSKEYGILSVLLRAYFDIESLFSVKPGSFFPP 194

Query: 199 PKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           P+VTS VI    +    +PC      ++ +  F +RRK +R S+K +
Sbjct: 195 PQVTSGVIRLTRNQTETLPCDEALFFRVVKTLFNQRRKMIRNSIKSI 241


>gi|15594935|ref|NP_212724.1| dimethyladenosine transferase [Borrelia burgdorferi B31]
 gi|195941723|ref|ZP_03087105.1| dimethyladenosine transferase [Borrelia burgdorferi 80a]
 gi|216264801|ref|ZP_03436793.1| dimethyladenosine transferase [Borrelia burgdorferi 156a]
 gi|218249411|ref|YP_002375098.1| dimethyladenosine transferase [Borrelia burgdorferi ZS7]
 gi|223888886|ref|ZP_03623477.1| dimethyladenosine transferase [Borrelia burgdorferi 64b]
 gi|224532720|ref|ZP_03673337.1| dimethyladenosine transferase [Borrelia burgdorferi WI91-23]
 gi|225548676|ref|ZP_03769723.1| dimethyladenosine transferase [Borrelia burgdorferi 94a]
 gi|226321896|ref|ZP_03797422.1| dimethyladenosine transferase [Borrelia burgdorferi Bol26]
 gi|27151556|sp|O51536|RSMA_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729758|sp|B7J2F3|RSMA_BORBZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|2688507|gb|AAB91517.1| dimethyladenosine transferase (ksgA) [Borrelia burgdorferi B31]
 gi|215981274|gb|EEC22081.1| dimethyladenosine transferase [Borrelia burgdorferi 156a]
 gi|218164599|gb|ACK74660.1| dimethyladenosine transferase [Borrelia burgdorferi ZS7]
 gi|223885702|gb|EEF56801.1| dimethyladenosine transferase [Borrelia burgdorferi 64b]
 gi|224512338|gb|EEF82722.1| dimethyladenosine transferase [Borrelia burgdorferi WI91-23]
 gi|225370706|gb|EEH00142.1| dimethyladenosine transferase [Borrelia burgdorferi 94a]
 gi|226233085|gb|EEH31838.1| dimethyladenosine transferase [Borrelia burgdorferi Bol26]
 gi|312147958|gb|ADQ30617.1| dimethyladenosine transferase [Borrelia burgdorferi JD1]
          Length = 281

 Score =  225 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 146/280 (52%), Gaps = 14/280 (5%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K  L   KI P+K  GQN+L++ +I +KI ES    +   + EIG G G
Sbjct: 8   MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLG 67

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T++LL      +   E D ++  IL +   +  N  ++I+ D LK    +  NI    
Sbjct: 68  AMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYKNENQNID--- 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +VL  
Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
              K   + DI  + F+P+PKV ST +  IP  N I    +   K+ +  F  RRK L+ 
Sbjct: 179 SHFKVIKILDIGENNFYPAPKVKSTTLKLIPKKNNI-KNFKEFNKLVRTVFSNRRKKLKN 237

Query: 240 SLKRLGG-ENLLHQAGIET--NLRAENLSIEDFCRITNIL 276
           ++      +  L +  ++   + R EN+S+E+F +I+N L
Sbjct: 238 TIINFITNKATLRENFLKEYLDKRPENISVEEFIQISNTL 277


>gi|146093446|ref|XP_001466834.1| ribosomal RNA adenine dimethylase family protein [Leishmania
           infantum JPCM5]
 gi|134071198|emb|CAM69883.1| putative ribosomal RNA adenine dimethylase family protein
           [Leishmania infantum JPCM5]
          Length = 374

 Score =  225 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 112/246 (45%), Gaps = 13/246 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S  +KT  S   I+  K  GQ+ L +  ++  I E +       VIEIG G GNLT+ LL
Sbjct: 57  SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
              A+KVI  E D +    L       P  ++L+II+ + L+ DF  F       + +AN
Sbjct: 117 QT-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV +    + 
Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           + +  IS + F P PKV S+VI   P         E    + +  F ++ K      +  
Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPRPDVDFEEWDGLVKMLFSRKNKKSSSIFRTK 285

Query: 245 GGENLL 250
                L
Sbjct: 286 AAVQAL 291


>gi|116669774|ref|YP_830707.1| dimethyladenosine transferase [Arthrobacter sp. FB24]
 gi|166221643|sp|A0JU87|RSMA_ARTS2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|116609883|gb|ABK02607.1| dimethyladenosine transferase [Arthrobacter sp. FB24]
          Length = 295

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 123/284 (43%), Gaps = 18/284 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     + P K +GQNF++D N +++I  ++      TV+E+G        + L
Sbjct: 19  ASDVRRLAEEIGVRPTKTLGQNFVIDGNTIRRIVAAADIHADETVLEVGP-GLGSLTLGL 77

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A+ V+ +E D      L    +           ++  DA+KV          P  ++
Sbjct: 78  LDAAKSVVAVEIDPVLAAKLPGTVQQWRPGAAKDFHLVLADAMKVTELPV----EPTALV 133

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + +      P      ++ Q EV +R+ A   S  YG  SV   W +
Sbjct: 134 ANLPYNVAVPVVLHLL---QHFPSLRHGLVMVQDEVADRLAAGPGSKTYGVPSVKAAWYS 190

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241
                  I  +VF+P+PK+ S ++ F     P+     E +  +   AF +RRKTLR +L
Sbjct: 191 SMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPVTSATREQVFAVIDAAFAQRRKTLRAAL 250

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
               G     E  L  AG++   R E + I  F RI     D Q
Sbjct: 251 AGWAGSAAEAEQCLLAAGVDPTARGEVIDIAAFARIAEARQDRQ 294


>gi|298675523|ref|YP_003727273.1| dimethyladenosine transferase [Methanohalobium evestigatum Z-7303]
 gi|298288511|gb|ADI74477.1| dimethyladenosine transferase [Methanohalobium evestigatum Z-7303]
          Length = 269

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 137/284 (48%), Gaps = 31/284 (10%)

Query: 10  LKTILSHYKIIPKKYMG----QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           + ++L  Y +I     G    Q+FL+D N L +I +S+   +  TV+EIGAG GNLT+ +
Sbjct: 2   IDSLLDEYGVI-----GGDHDQHFLVDDNFLNQIVDSAELTENDTVLEIGAGIGNLTEKI 56

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
                 K+  +E D     IL +  + + N +EII+ D L ++  +F       +++ANL
Sbjct: 57  AET-VHKLYAVELDPNLCDILIERFADYDN-VEIIEGDILDIELPEF------NKVVANL 108

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY+I + + F  +  +     +E   L++Q E   R+ + KNS  Y RL+V T +   A+
Sbjct: 109 PYSISSHITFKLLKHE-----FELGILMYQYEFARRMVSPKNSKDYSRLTVTTNFFADAS 163

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL--- 241
           ++  +    F P+P+V S V+  IP         E          FG+RRK LR ++   
Sbjct: 164 IIMKVPRSAFKPAPEVKSAVVKLIPRPASFDVVDEDFFLTFVTAVFGQRRKKLRNAILNT 223

Query: 242 -KRLGGENLLHQAGIET----NLRAENLSIEDFCRITNILTDNQ 280
             +LG  N+            N RAENL   +   I N L + +
Sbjct: 224 NSKLGIANVKEVVNKLPDEYMNKRAENLEPSELAYIANQLFNFK 267


>gi|124265397|ref|YP_001019401.1| dimethyladenosine transferase [Methylibium petroleiphilum PM1]
 gi|166221677|sp|A2SC77|RSMA_METPP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|124258172|gb|ABM93166.1| dimethyladenosine transferase [Methylibium petroleiphilum PM1]
          Length = 256

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 117/253 (46%), Gaps = 11/253 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K I +K  GQ+FL D  ++  I        G  ++EIG G G +T  L+      + V+E
Sbjct: 2   KHIARKRFGQHFLSDAAVVDAIVGLIDPRPGQALVEIGPGLGAMTDPLVARCEH-LTVVE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFN 136
                         +    L++I+ D L+VDF      S   +RI+ NLPYNI T +LF+
Sbjct: 61  L-----DRDLAARLRRRAELQVIESDVLRVDFAALAMASAGRLRIVGNLPYNISTPILFH 115

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            + A       E    + QKEV ER+ A   S  YGRLSV+  WR     + D+ P  F 
Sbjct: 116 LLPAAAQ---VEDQHFMLQKEVVERMAAAPCSKDYGRLSVMLQWRYDIESVLDVPPEAFE 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S V+  +P   P       L ++   AF +RRK LR +L +            +
Sbjct: 173 PPPRVNSAVVRMLPFPAPPAVDAALLGELVATAFSQRRKLLRHTLGKWLDAREFSGT-FD 231

Query: 257 TNLRAENLSIEDF 269
           T  RAE + + D+
Sbjct: 232 TQRRAEEVPVADY 244


>gi|322500967|emb|CBZ36044.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 374

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 112/246 (45%), Gaps = 13/246 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S  +KT  S   I+  K  GQ+ L +  ++  I E +       VIEIG G GNLT+ LL
Sbjct: 57  SSGVKTGGSQSGIVFNKGFGQHILKNPLVIAAIVEKAAIKPTDIVIEIGPGTGNLTEKLL 116

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
              A+KVI  E D +    L       P  ++L+II+ + L+ DF  F       + +AN
Sbjct: 117 QT-AKKVIAFEIDPRMVAELNKRFQNTPLASKLQIIRGNCLEQDFPYF------DKCVAN 169

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV +    + 
Sbjct: 170 VPYAISSALVFKLLKT----PTFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQLLARC 225

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           + +  IS + F P PKV S+VI   P         E    + +  F ++ K      +  
Sbjct: 226 SHLMKISKNSFNPPPKVESSVIRLDPKHPRPDVDFEEWDGLVKMLFSRKNKKSSSIFRTK 285

Query: 245 GGENLL 250
                L
Sbjct: 286 AAVQAL 291


>gi|295698578|ref|YP_003603233.1| dimethyladenosine transferase [Candidatus Riesia pediculicola USDA]
 gi|291157440|gb|ADD79885.1| dimethyladenosine transferase [Candidatus Riesia pediculicola USDA]
          Length = 263

 Score =  224 bits (572), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 90/261 (34%), Positives = 130/261 (49%), Gaps = 5/261 (1%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D  +  +I          ++IEIG G GNLT  +  +  +  I IE D  
Sbjct: 4   KKRFGQNFLSDSIVQDRIVTYFAPKSDQSIIEIGTGLGNLTIPIYHVIKKSFITIEIDAD 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L          ++I+  D +K+DF+     S   RII +LPYNI   ++  + S  
Sbjct: 64  LIKHLLSFYPDIFQVVKILNSDIMKLDFDLIMKKSLKYRIIGSLPYNIAIPIMVRFFSYH 123

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                   +  + QKE+ +R+ A  N   YGR SVL  +      +F ISP+ F P PKV
Sbjct: 124 KQ---LIDMHFVLQKEIVDRLIASPNIKLYGRTSVLFQYHFSINPIFHISPYSFRPIPKV 180

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            ST + F P+ N     C +  LK IT+ AF +RRK +  SLK         Q  I+ N+
Sbjct: 181 NSTFVRFKPYKNRIYPICEVNLLKLITRVAFHQRRKKILNSLKEFFNIEDYSQLCIDYNM 240

Query: 260 RAENLSIEDFCRITNILTDNQ 280
           RAENL+I ++C++TN L+  +
Sbjct: 241 RAENLTILEYCKLTNWLSKKE 261


>gi|210629940|ref|ZP_03296187.1| hypothetical protein COLSTE_00071 [Collinsella stercoris DSM 13279]
 gi|210160757|gb|EEA91728.1| hypothetical protein COLSTE_00071 [Collinsella stercoris DSM 13279]
          Length = 331

 Score =  224 bits (572), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 81/325 (24%), Positives = 129/325 (39%), Gaps = 60/325 (18%)

Query: 1   MT---MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT   + N S + + IL  + +  K  +GQNFL+D +++++I + +       V+E+G G
Sbjct: 1   MTTSPLANPSAT-REILEAFGLATKHRLGQNFLIDNHVIERIMDLAELTGSERVLEVGPG 59

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-- 115
            G LT  L+   A +V  IE D +  P+L   +  HPN    I  DAL V   +      
Sbjct: 60  IGTLTLALV-QAAGRVTSIEMDSELEPVLSAHAIDHPN-FNFIMGDALAVPPAQIAEALG 117

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
                ++ANLPYN+   ++  +       P      ++ QKEV +RI A   +  YG  +
Sbjct: 118 GESELLVANLPYNVAATIILQFFQTM---PSLRRAVVMVQKEVADRIAAVAGTKVYGAYT 174

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK------------ 223
           V      + T  F++ P  F P+P V S V+       P       +             
Sbjct: 175 VKLSLYGEVTGRFEVPPRCFMPAPHVDSAVVRIDRVGFPGTLSDRRVDAACGTDAPVSTA 234

Query: 224 --------------------------------KITQEAFGKRRKTLRQSLKRLGGEN--- 248
                                           ++   AF +RRKT+R S+   G +    
Sbjct: 235 GSDGVLTCDSNGGQDGASVLVLAGAPSAEDIARVVDAAFAQRRKTIRNSMSANGFDKAAL 294

Query: 249 --LLHQAGIETNLRAENLSIEDFCR 271
                Q  I +  RAE LS  +F +
Sbjct: 295 DAAFAQCDIASTARAETLSTIEFVQ 319


>gi|303388914|ref|XP_003072690.1| dimethyladenosine transferase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303301832|gb|ADM11330.1| dimethyladenosine transferase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 277

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 122/275 (44%), Gaps = 35/275 (12%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
              K  GQ+ L ++ ++  I E +      TV+EIG G GNLT  LL   A+KVI  E D
Sbjct: 5   KFNKQHGQHILKNMGVIDTIIERAKIKPTDTVLEIGGGTGNLTMKLL-QKAKKVICYEID 63

Query: 80  QQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            +    L    +  P    + ++   DALK DF  F         I+NLPY I +  +F 
Sbjct: 64  PRLAAELAKKVNGTPGMAQKFQLFVGDALKHDFPHF------DLCISNLPYQISSPFMFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +  D     ++   ++FQ+E  +R+ A+  S  Y RLSV      +   +  +S + F 
Sbjct: 118 LLKYD-----FKCAFIMFQREFSDRLVAKPGSSEYCRLSVGAQMLAQVDHVLKVSKNSFV 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG----------- 245
           P PK+ S+ +   P +   P  LE   +  +  F ++ KTL+ + +              
Sbjct: 173 PPPKIESSFVRIEPRIPRPPIDLEEFDRFLKICFLRKNKTLKANFRNSSLVSKVKGNPSF 232

Query: 246 --------GENLLHQAGIETNLRAENLSIEDFCRI 272
                    E +L +A ++   RA  +SI+DF  +
Sbjct: 233 ENTTPEEVFEKVLSRAELD-GARAAKMSIDDFLAL 266


>gi|302342375|ref|YP_003806904.1| dimethyladenosine transferase [Desulfarculus baarsii DSM 2075]
 gi|301638988|gb|ADK84310.1| dimethyladenosine transferase [Desulfarculus baarsii DSM 2075]
          Length = 284

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 129/279 (46%), Gaps = 16/279 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + +L    +   K  GQNFL      + I  S+       V+EIG G G LT       A
Sbjct: 4   RLLLERLGLHASKARGQNFLTQPATAQAIVASAAIGPEDFVVEIGPGLGALTVA-AGRLA 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYN 128
            +V+ +E D+     L D+ ++     +E    DAL +D+         P+ +I NLPYN
Sbjct: 63  SRVLAVEIDRGVHRALMDVLAEEGLQNVEARLMDALDLDWPATREQAGRPLVVIGNLPYN 122

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + LLF   +     P W + TL+ QKEV  R+ A+     +GRL V+     +     
Sbjct: 123 ITSPLLF---ALLAAAPCWRAATLMVQKEVATRLAAKPGGKDWGRLGVMVQSLCQVRAGV 179

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLKRL 244
            +S   FFP P V+S ++H  P   P+P  L        ++ + AFG+RRKT+  +L   
Sbjct: 180 TLSRGQFFPEPNVSSQIVHLTPLEQPLPAALGLSQAWFGQVVKAAFGQRRKTVANALAGG 239

Query: 245 GG------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            G      E+ L +A +  + RAE LSI +   I   LT
Sbjct: 240 LGLERGRVEDALGRAAVAPSRRAETLSIAELGAIALALT 278


>gi|239917075|ref|YP_002956633.1| ksgA dimethyladenosine transferase [Micrococcus luteus NCTC 2665]
 gi|281414463|ref|ZP_06246205.1| dimethyladenosine transferase [Micrococcus luteus NCTC 2665]
 gi|239838282|gb|ACS30079.1| ksgA dimethyladenosine transferase [Micrococcus luteus NCTC 2665]
          Length = 307

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 20/285 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
            +  ++ I +   + P K  GQNF++D N +++I +++       V+EIG        + 
Sbjct: 15  SAADVRRIAAELDLRPTKQWGQNFVIDPNTIRRIVQAADVSADEHVLEIGP-GLGSLTLG 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISS---- 117
           L   A  V  +E D      L   +++      + L ++  DA+ +  +    +      
Sbjct: 74  LLDAAAAVTAVEIDPVTAARLPRTAAEFRPGAEDALAVLHADAMTLSEQALAEVRPAAAA 133

Query: 118 --PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
             P  ++ANLPYN+   +L + ++     P      ++ Q+EV +R+ A   S  YG  S
Sbjct: 134 GSPTALVANLPYNVAVPVLLHALA---VLPGLRHGLVMVQEEVADRLAAGPGSKVYGVPS 190

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRR 234
               W         I   VF+P+P++ S ++ F     P        +  +   AF +RR
Sbjct: 191 AKAAWYADVRKAGTIGTQVFWPAPRIHSGLVAFTRREPPAGSASRREVFAVVDAAFAQRR 250

Query: 235 KTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           KTLR +L    G     E+ L  AG++   R E L I  F RI  
Sbjct: 251 KTLRAALASWAGSPPAAEDALVAAGVDPRARGEALDIAAFARIAE 295


>gi|153823926|ref|ZP_01976593.1| dimethyladenosine transferase [Vibrio cholerae B33]
 gi|126518553|gb|EAZ75776.1| dimethyladenosine transferase [Vibrio cholerae B33]
          Length = 209

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 5/200 (2%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H     +K  GQNFL D  I+  I  +     G  ++EIG G G +T+  +     K  V
Sbjct: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEP-VGREVDKFTV 64

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D+     L++   +  ++L I + DA++ DF++    ++ +R+  NLPYNI T L+F
Sbjct: 65  IELDRDLAERLRNH-PELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMF 123

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +           + +  + QKEV  R+ A   +  YGRL+V+  +  K   + ++ P  F
Sbjct: 124 HLFEFHR---DIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAF 180

Query: 196 FPSPKVTSTVIHFIPHLNPI 215
            P PKV S V+  +P+ +  
Sbjct: 181 VPPPKVDSAVVRLVPYEDLP 200


>gi|194476720|ref|YP_002048899.1| putative rRNA (adenine-N6,N6)- dimethyltransferase [Paulinella
           chromatophora]
 gi|171191727|gb|ACB42689.1| putative rRNA (adenine-N6,N6)- dimethyltransferase [Paulinella
           chromatophora]
          Length = 284

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 11/273 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQ++L D +IL KI  ++       V+EIG+G G LT+ LL   A   + +E
Sbjct: 5   GHAARKDFGQHWLKDKSILNKIILAADLSADDIVLEIGSGRGALTESLLASSALLTLAVE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+    +L+     H  R  +I+ D L+++F    +  +P +++AN+PYNI   LL   
Sbjct: 65  LDRDLASMLRKRLGTH-TRFALIEGDILRINFPN-ASTYTPNKVVANIPYNITGPLLKRL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           + +   P    ++ + LL Q+EVG+RI A      Y  LSV      +   +  + PH F
Sbjct: 123 LGSLNKPLNKPYKKIVLLVQQEVGDRIRANPGHTSYSALSVKMQLLARCYSVCIVPPHCF 182

Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH- 251
            PSP V S VI   P     + +P     ++++ +  F  RRK LR SL  L     L  
Sbjct: 183 DPSPSVVSEVIVLEPLNPDQHLMPELAIRVEELLKFCFSSRRKMLRNSLTNLVPIKFLEI 242

Query: 252 ---QAGIETNLRAENLSIEDFCRITNILTDNQD 281
              ++GI    R + L+   +  +   L+   D
Sbjct: 243 VIAKSGISLEQRPQELTPSQWVDLAASLSKFSD 275


>gi|239906699|ref|YP_002953440.1| dimethyladenosine transferase [Desulfovibrio magneticus RS-1]
 gi|239796565|dbj|BAH75554.1| dimethyladenosine transferase [Desulfovibrio magneticus RS-1]
          Length = 276

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 120/262 (45%), Gaps = 14/262 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            K+ +GQNFL+D N+  KI          TVIEIG G G L+  +L  G R  + +EKD+
Sbjct: 19  AKRSLGQNFLVDPNVSAKIVAQLRIGPEDTVIEIGPGRGALSGHILAAGPRAYLALEKDR 78

Query: 81  QFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +    L ++    HP  +     DAL++D+ +   +    +++ NLPYNI + LL++  S
Sbjct: 79  ELAARLPREHPGAHPALV-----DALRLDWSRLDALDG-AKLVGNLPYNIASPLLWDICS 132

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             +    +     + Q EV  R+ A      YG L+  T    +    F +SP VF P P
Sbjct: 133 QAS---RFAVGVFMVQHEVALRLCAAPGGRQYGALTAWTSSFARFDYCFKVSPGVFRPQP 189

Query: 200 KVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA---GI 255
           KV S V+   P      P     L  + +  F  RRK L   LK    E L       GI
Sbjct: 190 KVDSAVVAVTPRASKERPEDPAGLATLLKRLFSMRRKQLAGILKPHWDEALAQACAGHGI 249

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           E  +R E L+   F ++  +L 
Sbjct: 250 EGRVRPETLTPGQFQQLAKLLK 271


>gi|170575593|ref|XP_001893303.1| ribosomal RNA adenine dimethylase family protein [Brugia malayi]
 gi|158600773|gb|EDP37864.1| ribosomal RNA adenine dimethylase family protein [Brugia malayi]
          Length = 364

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 151/301 (50%), Gaps = 26/301 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              SLK+ L  Y++  KK + QN+L+D+N+ +KI   +    G  V+EIG GPG++T+ +
Sbjct: 10  PLPSLKSFLYAYQLQAKKILSQNYLMDMNLTRKIVRQAEMKKGDYVVEIGPGPGSITRAI 69

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           L +  R++ VIE D +F P L+ +      R+ I + D LK + E+ ++ +         
Sbjct: 70  LEMDCRRLDVIEIDHRFVPPLEVLKEASEERMFIHRADILKTNIEQIWSQAGLERVAWEE 129

Query: 117 ---SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNS 168
                  II NLP+NI + L+  ++         W      L L FQ EV ER+ +  +S
Sbjct: 130 DRLPTAHIIGNLPFNIASPLIIKFLREMLYRQGPWSFGRVPLLLTFQMEVAERLCSPIDS 189

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQ 227
           P   R+S+++ + T+  ++F I    F PSPKV   V+ F+P  +P I    E ++K+ +
Sbjct: 190 PFRARISIMSAFVTEPKLLFQIPGRCFVPSPKVNVGVVRFVPRQDPLIKTSFEVVEKVCR 249

Query: 228 EAFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             F  R+K + + ++ L  +        +LL +  I+    A  L +E F  I  +  ++
Sbjct: 250 RIFNYRQKYVIKGVRTLYPKELAKHLADDLLKRCRIDPTTTAICLGVEQFADICYVYEEH 309

Query: 280 Q 280
            
Sbjct: 310 C 310


>gi|209877254|ref|XP_002140069.1| dimethyladenosine transferase protein [Cryptosporidium muris RN66]
 gi|209555675|gb|EEA05720.1| dimethyladenosine transferase protein, putative [Cryptosporidium
           muris RN66]
          Length = 361

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 126/279 (45%), Gaps = 39/279 (13%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI E+S       V+EIG G GNLT  LL L ARKVI  + D + 
Sbjct: 54  KKKGQHLLKNPGILDKIVEASDIKPTDIVLEIGPGTGNLTMRLLPL-ARKVIAFDIDPRM 112

Query: 83  FPILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +K  S +   N LE+ + DAL+ D  KF          ANLPY I +  +F  +S  
Sbjct: 113 VAEVKKRSMNAGYNNLEVKEGDALRSDLGKF------DICTANLPYQISSPFVFRILSHK 166

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P +    L+FQ+E   R+ A+    HY RL++ T    K   +  + P  F P PKV
Sbjct: 167 ---PTFRCAVLMFQEEFALRLLAEPGDKHYCRLTLNTKLLCKVIRVCKVLPGSFNPPPKV 223

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---------- 251
            S V+ FIP   PIP        + +  F +++KT+R + K      +L           
Sbjct: 224 NSMVVKFIPKTCPIPVNFREWDGLMRICFLRKKKTIRANFKGSSTLTMLENNYKTWCSLN 283

Query: 252 ----QAGIE--------------TNLRAENLSIEDFCRI 272
               Q  +                + RA N+SI+++ ++
Sbjct: 284 NQVPQNNVPFKEFVFKILENTGLESKRAFNISIDEYFKL 322


>gi|111115418|ref|YP_710036.1| dimethyladenosine transferase [Borrelia afzelii PKo]
 gi|123145677|sp|Q0SMR8|RSMA_BORAP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|110890692|gb|ABH01860.1| dimethyladenosine transferase [Borrelia afzelii PKo]
          Length = 281

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 146/281 (51%), Gaps = 14/281 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K  L   KI P+K  GQN+L++ NI +KI ES    +   + EIG G G
Sbjct: 8   MNINYNSITSIKQTLKEKKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLG 67

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL      +   E D ++  IL +   +  N  ++I+ D LK    +  NI    
Sbjct: 68  AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYPNENKNID--- 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +VL  
Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI  + F+P+PKV ST +  IP  + I    +   K+ +  F  RRK L+ 
Sbjct: 179 SHFTVIKIIDIGGNNFYPAPKVKSTTLKLIPKKHNI-KDFKEFNKLIRTVFSSRRKKLKN 237

Query: 240 SLKRLGG-ENLLHQAGIET--NLRAENLSIEDFCRITNILT 277
           ++      + +L +  ++   + R EN+S+E+F +I+N LT
Sbjct: 238 TIINFITNKAILRENFLKEYLDKRPENISVEEFIQISNTLT 278


>gi|15828486|ref|NP_325846.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase)(16S rRNA
           dimethylase)(high level kasugamycin resistance protein
           KSGA) (kasugamycin dimethyltransferase) [Mycoplasma
           pulmonis UAB CTIP]
 gi|27151595|sp|Q98RJ3|RSMA_MYCPU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|14089428|emb|CAC13188.1| DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N',
           N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE)(16S RRNA
           DIMETHYLASE)(HIGH LEVEL KASUGAMYCIN RESISTANCE PROTEIN
           KSGA) (KASUGAMYCIN DIMETHYLTRANSFERASE) [Mycoplasma
           pulmonis]
          Length = 252

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/259 (32%), Positives = 126/259 (48%), Gaps = 15/259 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNFL+D NI+ KI +SS   +   +IEIG G G LT++L+   A KV+  E 
Sbjct: 1   MRAKKRFGQNFLIDQNIINKIVDSSEV-ENRNIIEIGPGKGALTKILVK-KANKVLAYEI 58

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           DQ    IL    S       +I  D LK    + F+ S    I+AN+PY I + ++F  I
Sbjct: 59  DQDMVNILNQQIS--SKNFVLINKDFLK----EEFDKSQNYNIVANIPYYITSDIIFKII 112

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   ++  TL+ QKEV  RI A++N   + +LS+   +     ++ D+S + F P 
Sbjct: 113 ENHQ---IFDQATLMVQKEVALRILAKQNDSEFSKLSLSVQFFFDVFLICDVSKNSFRPI 169

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQAG 254
           PKV S VI  +   N      +   +  + AF  RRKTL  +LK    E           
Sbjct: 170 PKVDSAVIKLVKKKNKDFSLWKEYFEFLKIAFSSRRKTLLNNLKYFFNEQKILKFFELKN 229

Query: 255 IETNLRAENLSIEDFCRIT 273
            +  +RA+N+  EDF  + 
Sbjct: 230 YDPKVRAQNIKNEDFYALF 248


>gi|330836977|ref|YP_004411618.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta
           coccoides DSM 17374]
 gi|329748880|gb|AEC02236.1| Ribosomal RNA small subunit methyltransferase A [Spirochaeta
           coccoides DSM 17374]
          Length = 291

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/280 (26%), Positives = 128/280 (45%), Gaps = 15/280 (5%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +  +++  +L    +   K  GQNFLL   I K+I ++     G+T+ EIG G G LT +
Sbjct: 8   DSPNAINNLLQEESLAMNKQFGQNFLLPQAIRKRIVDALEPSAGLTIWEIGPGLGALTVL 67

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL     ++   E D+ F  IL++ +        +++ D LK     + +   P RI  N
Sbjct: 68  LLEKKC-QLTAFEIDKGFCSILREKAFADETGFRLVEGDFLKTWEAVYGSGGVPHRICGN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+G+  +   +     P     +    QKEV ER+T++    +   L++L     + 
Sbjct: 127 LPYNVGSVCIARLLERQCLPDI---MVFTVQKEVAERLTSRDGDKNRSTLTLLADIDYET 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQS-- 240
            ++F I    F+PSP VTS  +       P+           + ++AF  RRKT++ +  
Sbjct: 184 RLLFTIGGGAFYPSPDVTSAAVGMYRRATPLVDAALRPVYLSLVKDAFSHRRKTMKNNLL 243

Query: 241 -------LKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
                  L + G + +L  +G+    RAE LS E+   + 
Sbjct: 244 QGEIGNTLGKDGVDAILANSGVNPQSRAEALSFEELKALA 283


>gi|320536299|ref|ZP_08036342.1| dimethyladenosine transferase [Treponema phagedenis F0421]
 gi|320146859|gb|EFW38432.1| dimethyladenosine transferase [Treponema phagedenis F0421]
          Length = 287

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 86/285 (30%), Positives = 129/285 (45%), Gaps = 17/285 (5%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N   +L + L    +  +K  GQNFL+D N+ K + +S     G  + EIG G G +T +
Sbjct: 7   NSPSALASFLKERDLGMRKKFGQNFLIDENMRKFLIDSLELQGGERIWEIGPGLGAMTFL 66

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL          E D  F   L+    ++P    +I+ DALK      F    P     N
Sbjct: 67  LLEKNVH-TTAFEIDSGFSDFLRKAYGENPL-FTLIEGDALKTWKAA-FEKEKPDCFFGN 123

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI  +L+ + I A+     ++ L +  QKEVG+R+ AQ NSP Y   SVL       
Sbjct: 124 LPYNIAAKLIADTIEAEA---IFDKLLVTVQKEVGDRMRAQPNSPDYSSFSVLCNRYYDV 180

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKR 243
           T +  I    F+P P V S  +      + I C   +   ++ +  F  RRKTL+ +   
Sbjct: 181 TALRTIPSACFWPRPNVVSQALLLTKKTDLIDCKDNKLFFQLLRAFFSSRRKTLKNNFLA 240

Query: 244 LGGEN----------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
               N             +A I+++ RAE L + DF ++ +ILT 
Sbjct: 241 WQKSNPLYAAVDADTFFKKAEIDSSARAETLQVYDFLKLCDILTS 285


>gi|242210765|ref|XP_002471224.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729783|gb|EED83652.1| predicted protein [Postia placenta Mad-698-R]
          Length = 322

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 12/230 (5%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ+ L +    + I +++       V+E+G G GNLT  +L   A+ V  +E D +  
Sbjct: 42  RFGQHILKNPQTAQSIVDTANLRPTDKVLEVGPGTGNLTVRILE-KAKHVTAVEMDPRMA 100

Query: 84  PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L       P   +LEI+  D +K     F         I+N PY I + L+F  +S  
Sbjct: 101 AELTKRVQGKPEQRKLEIMIGDFVKATLPYF------DVCISNTPYQISSPLIFRLLSHR 154

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P + +  L+FQ+E   R+ A+  S  + RLS       K  ++  +S + F P PKV
Sbjct: 155 ---PLFRTAILMFQREFAMRLVARPGSEMWSRLSANVQLYAKVDLVMHVSKNNFRPPPKV 211

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            S+VI  +P   P P        + +  FG+R K +  + +  G   +L 
Sbjct: 212 ESSVIRLVPRDPPPPVEFGEFDGLARIVFGRRNKMIHANFQAKGVMEMLE 261


>gi|221218035|ref|ZP_03589501.1| dimethyladenosine transferase [Borrelia burgdorferi 72a]
 gi|224533530|ref|ZP_03674119.1| dimethyladenosine transferase [Borrelia burgdorferi CA-11.2a]
 gi|225549493|ref|ZP_03770459.1| dimethyladenosine transferase [Borrelia burgdorferi 118a]
 gi|226321214|ref|ZP_03796749.1| dimethyladenosine transferase [Borrelia burgdorferi 29805]
 gi|221191983|gb|EEE18204.1| dimethyladenosine transferase [Borrelia burgdorferi 72a]
 gi|224513203|gb|EEF83565.1| dimethyladenosine transferase [Borrelia burgdorferi CA-11.2a]
 gi|225369770|gb|EEG99217.1| dimethyladenosine transferase [Borrelia burgdorferi 118a]
 gi|226233382|gb|EEH32128.1| dimethyladenosine transferase [Borrelia burgdorferi 29805]
          Length = 281

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 145/280 (51%), Gaps = 14/280 (5%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K  L   KI P+K  GQN+L++ +I +KI ES    +   + EIG G G
Sbjct: 8   MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLG 67

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T++LL      +   E D ++  IL +   +  N  ++I+ D LK    +  NI    
Sbjct: 68  AMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYKNENQNID--- 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +VL  
Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
              K   + DI  + F+P+PKV ST +  IP    I    +   K+ +  F  RRK L+ 
Sbjct: 179 SHFKVIKILDIGENNFYPAPKVKSTTLKLIPKKTNI-KNFKEFNKLVRTVFSNRRKKLKN 237

Query: 240 SLKRLGG-ENLLHQAGIET--NLRAENLSIEDFCRITNIL 276
           ++      +  L +  ++   + R EN+S+E+F +I+N L
Sbjct: 238 TIINFITNKATLRENFLKEYLDKRPENISVEEFIQISNTL 277


>gi|116624617|ref|YP_826773.1| dimethyladenosine transferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227779|gb|ABJ86488.1| dimethyladenosine transferase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 247

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 123/258 (47%), Gaps = 14/258 (5%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +P+K +GQ+FL + ++L +IA +        VIEIG G G LT+ LL    R VI IE D
Sbjct: 1   MPQK-LGQHFLSNGSVLDRIALAVCPEGEELVIEIGPGKGALTEKLLQRSGR-VIAIELD 58

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 L+       +RL++I  D L  D  ++     P+ I  NLPY I + +L   + 
Sbjct: 59  PVLVEYLRQKFEG-ESRLQVIHADVLHTDLAQW----GPVPIAGNLPYYITSPILERSVR 113

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A            L QKEV  R+ A      YG L++ T       ++F++ P  F P P
Sbjct: 114 AGAP-----RTVFLIQKEVAHRLVAHPGQRDYGYLTLQTALFADTKLLFEVKPGAFKPPP 168

Query: 200 KVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S V+   PH         +   K    +F ++RKTLR +L  + G++L+  A  E  
Sbjct: 169 KVDSAVVLLTPHGRDYGITDRDKFLKFLSHSFRQKRKTLRNNLFAVYGKDLID-AWPEAG 227

Query: 259 LRAENLSIEDFCRITNIL 276
           LRAE + +E F  +   +
Sbjct: 228 LRAEQIPMEKFVEMFRRI 245


>gi|312149423|gb|ADQ29494.1| dimethyladenosine transferase [Borrelia burgdorferi N40]
          Length = 281

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 147/280 (52%), Gaps = 14/280 (5%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K  L   KI P+K  GQN+L++ +I +KI ES    +   + EIG G G
Sbjct: 8   MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLG 67

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T++LL      +   E D ++  IL +   +  N  ++I+ D LK    +  NI    
Sbjct: 68  AMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYKNENQNID--- 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +VL  
Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
              KA  + DI  + F+P+PKV ST +  IP  N I    +   K+ +  F  RRK L+ 
Sbjct: 179 SHFKAIKILDIGENNFYPAPKVKSTTLKLIPKKNNI-KNFKEFNKLVRTVFSSRRKKLKN 237

Query: 240 SLKRLGG-ENLLHQAGIET--NLRAENLSIEDFCRITNIL 276
           ++      +  L +  ++   + R EN+S+E+F +I+N L
Sbjct: 238 TIINFITNKATLKENFLKEYLDKRPENISVEEFIQISNTL 277


>gi|156084308|ref|XP_001609637.1| dimethyladenosine transferase protein [Babesia bovis T2Bo]
 gi|154796889|gb|EDO06069.1| dimethyladenosine transferase protein, putative [Babesia bovis]
          Length = 366

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 40/284 (14%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +   K  GQ+ L +  IL KI  ++      TV+EIG G GNLT  L+ L ARKVI I+
Sbjct: 46  GMTFNKKFGQHMLKNPGILDKIILAAEIRSSDTVLEIGPGTGNLTIRLVPL-ARKVIAID 104

Query: 78  KDQQFFPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D +    +K    S   + L++I+ DAL++ + KF          ANLPY I +  +F 
Sbjct: 105 IDNRMVGEVKKRCLSMGYSNLDVIEGDALRITYPKF------DVCTANLPYQISSPFVFK 158

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S     P +    L+FQKE  ER+ A  N   YGRL++ T      T +  ++P  F 
Sbjct: 159 LLSHR---PLFRCAVLMFQKEFAERLLASTNEAKYGRLAINTRLFCTVTRVCKVAPGSFN 215

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ-------------SLKR 243
           P PKV S ++  +P   P+         + +  F ++R+TLR              + K 
Sbjct: 216 PPPKVDSMIVKIVPREQPLVIDFVEWDGMIRVCFTRKRRTLRSLFKKQAILSVLEGNYKN 275

Query: 244 LGGEN---------------LLHQAGIETNLRAENLSIEDFCRI 272
               N               +L ++G+  N R+  +SI +F  +
Sbjct: 276 WCTINGKAPEPMPFKDYCMGILEESGLS-NRRSITVSIAEFLEL 318


>gi|163783970|ref|ZP_02178937.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880766|gb|EDP74303.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 254

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 9/260 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K   KK  GQ+ L+   ++ KI ++        ++EIG G G LTQ +L    +K+  IE
Sbjct: 3   KFRTKKKFGQHLLISEGVISKIVDTIDVKLEDIIVEIGVGTGQLTQEILKRNPKKLYGIE 62

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+  +PI+++   +  N  E+I+ D  +V+  +    +  I+++ NLPYN+ + +    
Sbjct: 63  IDETAYPIIEERFKEFEN-FELIKKDFFEVNLYEIAE-NQKIKLVGNLPYNVSSLI---L 117

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I+   +    E    + QKEV E++T +  + +Y  L++      +   +  +    F P
Sbjct: 118 INTVFYIDIIERTVFMLQKEVAEKLTTKPKTKNYTFLTIFIQTFFEVEYVMSVPARFFSP 177

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            PKV S V+   P  +      ++ K      F  RRK LR        EN+L    I  
Sbjct: 178 PPKVISAVVRMFPKKDYPKIDKKNYKNFVSSLFSNRRKMLR----TKIDENILKSLNIPP 233

Query: 258 NLRAENLSIEDFCRITNILT 277
             R E L  EDF R+   + 
Sbjct: 234 TARVEELKPEDFLRLYEKIK 253


>gi|290996728|ref|XP_002680934.1| predicted protein [Naegleria gruberi]
 gi|284094556|gb|EFC48190.1| predicted protein [Naegleria gruberi]
          Length = 308

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 12/229 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
               I  +K  GQ+ L++  ++  + E +      TV+EIG G GN+T  LL   A+KVI
Sbjct: 18  RTQGIQFQKSFGQHILINPGVIDHVIEKACIQPTDTVLEIGPGTGNMTVKLL-QKAKKVI 76

Query: 75  VIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            IE D +    LK         ++L+II  DALKV+   F         IANLPY I + 
Sbjct: 77  AIEVDPRMVVELKKRVQGTALESKLQIIHKDALKVELPYF------DLCIANLPYQISSP 130

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           + F  ++     P +    L++Q+E  +R+ A+     Y RLSV T    +   +  +S 
Sbjct: 131 ITFKLLAHQ---PSFRVAYLMYQREFAQRLVAKPGDNLYCRLSVNTQLLARCDHVVKVSK 187

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           + F P PKV S+++   P   P P        + +  F +R K L    
Sbjct: 188 NSFRPPPKVESSIVRIEPKNPPPPINFLEWDGLARILFQRRNKQLGSVF 236


>gi|269120656|ref|YP_003308833.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386]
 gi|268614534|gb|ACZ08902.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386]
          Length = 276

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 122/269 (45%), Gaps = 13/269 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK  GQNFL +  IL++I   +      TVIEIG G G LT+ L    A +V   E D
Sbjct: 13  RTKKKYGQNFLENKVILEEIFSYADINKTDTVIEIGPGLGFLTESLAE-KAGQVYAFEID 71

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                IL +  S+  N L+II  D +  D  +       I+++AN+PY I + ++   I 
Sbjct: 72  DDLVKILSEKFSKVEN-LKIIHTDFMDYDLSEIVEKEKNIKVVANIPYYITSPIVGKLIK 130

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +    + + ++ QKEV ERI+A   S     L+    +   A  +F +   +F P P
Sbjct: 131 ---YRDSIDEIYIMVQKEVAERISAVSPSSDISLLTHAVQFFGNAEYLFTVKKELFNPVP 187

Query: 200 KVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLH 251
           KV S  +    + +             K  + AF  +RK+L  ++K LG +       L 
Sbjct: 188 KVDSAFLGIKLYKDREYEKQIDEAEYFKYLKAAFSNKRKSLGNNMKNLGYDKQQTGSALE 247

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280
           + G +   RAE  S+++F    N L D +
Sbjct: 248 KTGKKPLARAEEFSVQEFIDFINALKDEK 276


>gi|260906056|ref|ZP_05914378.1| dimethyladenosine transferase [Brevibacterium linens BL2]
          Length = 302

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 134/287 (46%), Gaps = 24/287 (8%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT+   +  ++ I +   + P K  GQNF++D N ++ I  S+      +V+EIG G G+
Sbjct: 1   MTLLT-ARDIREIAADIGLRPTKQKGQNFVIDPNTVRSIVASAKLQGHSSVVEIGPGLGS 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---------RLEIIQDDALKVDFEK 111
           LT  LL  G   V  +E D+     L     ++ +           E++  DAL+V    
Sbjct: 60  LTLGLLEAG-HDVTAVEIDEVLAQRLPATVKKYGHTDDAAEGAANFELVNADALRVTE-- 116

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
               ++P  ++ANLPYN+   +L +++      P  +S+ ++ Q EV ER+ A   S  Y
Sbjct: 117 --LPTAPEALVANLPYNVAVPVLLHFLE---IFPSLKSVLVMVQLEVAERLAAGPGSRTY 171

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAF 230
           G  SV   W    T+   I  +VF+P+P + S ++H               L  +   AF
Sbjct: 172 GVPSVKAQWYGDVTLAGRIGKNVFWPAPNIDSGLVHIDVTRTQRDLQQRRRLFSVVDAAF 231

Query: 231 GKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272
            +RRKTLR +L    G     E  L  AGI+   R E L + DF R+
Sbjct: 232 AQRRKTLRAALATWAGSPQQAEECLRAAGIDPKTRGEALGVADFERL 278


>gi|216263454|ref|ZP_03435449.1| dimethyladenosine transferase [Borrelia afzelii ACA-1]
 gi|215980298|gb|EEC21119.1| dimethyladenosine transferase [Borrelia afzelii ACA-1]
          Length = 274

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 146/281 (51%), Gaps = 14/281 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K  L   KI P+K  GQN+L++ NI +KI ES    +   + EIG G G
Sbjct: 1   MNINYNSITSIKQTLKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL      +   E D ++  IL +   +  N  ++I+ D LK    +  NI    
Sbjct: 61  AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYPNENKNID--- 115

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +VL  
Sbjct: 116 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI  + F+P+PKV ST +  IP  + I    +   K+ +  F  RRK L+ 
Sbjct: 172 SHFTVIKIIDIGENNFYPAPKVKSTTLKLIPKKHNI-KDFKEFNKLIRTVFSSRRKKLKN 230

Query: 240 SLKRLGG-ENLLHQAGIET--NLRAENLSIEDFCRITNILT 277
           ++      + +L +  ++   + R EN+S+E+F +I+N LT
Sbjct: 231 TIINFITNKAILRENFLKEYLDKRPENISVEEFIQISNTLT 271


>gi|145350183|ref|XP_001419496.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579728|gb|ABO97789.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 268

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 132/272 (48%), Gaps = 19/272 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            ++++GQ+FL+D +++    E++    G  V+EIG G GNLT  +L  GAR V+ +EKD+
Sbjct: 1   ARRWLGQHFLVDASVVTDAVEAARLGAGERVLEIGPGTGNLTNEMLKRGAR-VLAVEKDR 59

Query: 81  QFFPILKD-ISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLPYNIGTRLL 134
                L++ +  ++ +  E+++ D LK D     FE+    +   +++AN+PYNI T +L
Sbjct: 60  NLAEKLREGLCVEYKDAFELVEGDFLKWDGLATAFERATPETPRAKVVANIPYNITTDVL 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
              +        +E +  +FQ+EV +R+         Y  +SV   + +K   +  +   
Sbjct: 120 KVLL---PMGDTFEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYSKPYYIRPVLRD 176

Query: 194 VFFPSPKVTSTVIHFIPHLN----PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN- 248
            F P P V S +I F P       P+    +      Q  F ++RK LR +LK +  E  
Sbjct: 177 CFMPPPNVESCLIGFKPKEPHELLPLNGTDKQFFTFVQACFAQKRKMLRNNLKAVCDEAT 236

Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNILT 277
                        +R + L++E++ ++ N + 
Sbjct: 237 MDGAFALLDRGLKVRPQELTMEEYVKLFNFVR 268


>gi|257784886|ref|YP_003180103.1| dimethyladenosine transferase [Atopobium parvulum DSM 20469]
 gi|257473393|gb|ACV51512.1| dimethyladenosine transferase [Atopobium parvulum DSM 20469]
          Length = 314

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 129/301 (42%), Gaps = 33/301 (10%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              + K  L  + +  K  +GQNFL+  +I++KI + +       V+E+G G G LT  L
Sbjct: 14  NQRATKETLERFGLATKYRLGQNFLVQDHIIEKIVQLAEVRPTDVVVEVGPGLGTLTVAL 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISS------- 117
           L   A  V  +E D +   +L     + HP+   ++  DAL +  +K             
Sbjct: 74  LD-NALAVCSLEADPELEQVLDVTCKEPHPDSFVLVMGDALAITSQKLAEAYGVLPAVAQ 132

Query: 118 --------PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
                   P + ++NLPY +   L+  +       P  E   ++ Q EV +RI A+ ++ 
Sbjct: 133 SAIPVTPMPTKFVSNLPYQVAATLILKFFQE---LPSLERAVVMVQAEVADRIAAKPSTK 189

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL------- 222
            YG  +       + T  F++ P  F P P+V S V+         P   E L       
Sbjct: 190 AYGAYTAKLSLFAQVTGRFEVGPGNFMPPPRVNSAVVRLDRTEARNPLTSEFLSEEELLH 249

Query: 223 -KKITQEAFGKRRKTLRQSLKRLG-GENLLHQA----GIETNLRAENLSIEDFCRITNIL 276
             ++   AF +RRKT+R S+   G  ++ L QA    GI    RAE L+ +DF  +   L
Sbjct: 250 AMRVIDAAFAQRRKTIRNSMSASGFDKDKLDQAFLATGIAPTARAEVLTSQDFICLAAAL 309

Query: 277 T 277
            
Sbjct: 310 E 310


>gi|14591574|ref|NP_143656.1| dimethyladenosine transferase [Pyrococcus horikoshii OT3]
 gi|3258259|dbj|BAA30942.1| 290aa long hypothetical dimethyladenosine transferase [Pyrococcus
           horikoshii OT3]
          Length = 290

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 36/284 (12%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +LS Y I P+  +GQ+FL+  ++++K  E++   +   ++E+G G G LT  L    A+K
Sbjct: 30  LLSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAKR-AKK 88

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE DQ+   ILK   S   N ++IIQ DA++V++ KF       ++++N+PY I + 
Sbjct: 89  VYTIEIDQKIIEILKKEYS--WNNVKIIQGDAVRVEWPKF------NKVVSNIPYKISSP 140

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
             F  +  D     +E   +++Q E   R+ A+  S +Y RLS++        ++  I  
Sbjct: 141 FTFKLLKTD-----FERAVVMYQLEFALRMVAKPGSRNYSRLSLMAQALGNVEIVMKIGK 195

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
             F+P PKV S ++   P  + I       + + +  F  RRKT+ ++LK     + +H 
Sbjct: 196 GAFYPRPKVDSALVLIEPRKDKIVLN----ENLVKALFQHRRKTVPRALK-----DSIHM 246

Query: 253 AGI-------------ETNLRAENLSIEDFCRITNILTDNQDIA 283
            G+              +N R   L  E+   I   L  +  I+
Sbjct: 247 LGVSKDEIRGIINNVPHSNKRVFQLYPEEVKDIEEYLKKHGIIS 290


>gi|268323689|emb|CBH37277.1| Probable dimethyladenosine transferase [uncultured archaeon]
          Length = 250

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 132/266 (49%), Gaps = 19/266 (7%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           K IL    I   + +GQ FL+D ++  ++ E +       V+EIGAG G++T+ L    A
Sbjct: 4   KRILMDRGIRAVRSLGQYFLVDNDVAARMVEYASVGSEDLVLEIGAGLGSVTEELA-RKA 62

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++V  +EKD++   IL++       ++E+I+ D +K++  +F       +++A++PY++ 
Sbjct: 63  KRVYAVEKDKELCEILREQYVDKKGKIEVIEADIMKLELPEF------DKVVASIPYSLS 116

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + + +  +  +     +E   LL+QKE  +++TA+  S  YGRLSV+        ++  +
Sbjct: 117 SPITYKLLLHN-----FELAVLLYQKEFAQKMTAEPRSHLYGRLSVIAQALADIEILEIV 171

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
               F PSP V + ++ F      +        +    AFG RRK +R   +     + L
Sbjct: 172 HRDAFCPSPPVKTAIVRFTEKKKRLVEDKREFIEFVSFAFGHRRKMMRHIFR---TSDAL 228

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
                +   R E LS E+F R+ +I 
Sbjct: 229 K----DLAKRPEELSPEEFARLFSIF 250


>gi|257063482|ref|YP_003143154.1| dimethyladenosine transferase [Slackia heliotrinireducens DSM
           20476]
 gi|256791135|gb|ACV21805.1| dimethyladenosine transferase [Slackia heliotrinireducens DSM
           20476]
          Length = 296

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 137/288 (47%), Gaps = 22/288 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K    +T+L  + +  KK +GQNFL+   I+ KI E S       V+E+G G G LT  L
Sbjct: 9   KPSVTRTVLQRHGLATKKALGQNFLVSDAIIGKICELSEVCGQDDVLEVGPGIGTLTVAL 68

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRI 121
           L   A +V+ +E+D+    +L +      N   ++Q DAL +  E F     +  +P + 
Sbjct: 69  LPR-ANRVLSVERDRDLPAVLAETCGAFDN-FTLLQKDALDLREEDFACVPGDPFAPNKF 126

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY +   L+ ++          +S T++ Q EV +R++A+  +  YG  +V     
Sbjct: 127 VANLPYAVAATLVLDYFQK---IESIQSATVMVQSEVADRMSAKPATKEYGAYTVKLQLI 183

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQ 239
            K T  F +SP+ FFP P VTS+VI      +    P    +   +   AF +RRKT+  
Sbjct: 184 AKPTGRFQVSPNNFFPPPHVTSSVIRLDRRDDLGVTPDEAAAASMMADAAFTQRRKTVAN 243

Query: 240 SLKRLGGE-----------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           S+K+                ++  AGI+   R E L +E+F  +   L
Sbjct: 244 SMKQYFSRPQSPIDATDVPKMMQSAGIDARRRGETLGLEEFIELGRCL 291


>gi|325473126|gb|EGC76322.1| dimethyladenosine transferase [Treponema denticola F0402]
          Length = 293

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 14/282 (4%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +    LK++L       +K  GQNFL+D    + +        G  V E+G G G +T +
Sbjct: 13  DSPAELKSLLETLGFAMQKKFGQNFLIDKKTRENLISFLTLDKGTRVWEVGPGLGAMTYL 72

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           LL  G   +   E D+ F  +LK    ++      +++ D  K           P     
Sbjct: 73  LLEKGVH-LTAFEIDKGFISLLKKFFLENSKQNFRLVEGDVQKNWLPYLREHGKPDVFFG 131

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYNI + L+ + + A      ++++    QKE  ERITA+  + +Y   SVL     +
Sbjct: 132 NLPYNIASDLIASTVEAGV---VFDTMLFTVQKEAAERITARPGNKNYTAFSVLCALFYE 188

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLK 242
             ++  I    F+P P V S  + F            +   KI +  F  RRK ++ +L 
Sbjct: 189 CKIVKTIPASAFWPQPNVESAAVLFKAKKEFAEYKNFKLFIKIVKALFSSRRKNIKNNLG 248

Query: 243 RLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNIL 276
                N        +L ++G+  NLRAE+L++ DF  +++I+
Sbjct: 249 SWMKSNGYGDKIDLVLERSGLSGNLRAESLALYDFLLLSDII 290


>gi|33862894|ref|NP_894454.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9313]
 gi|62900570|sp|Q7V7W0|RSMA_PROMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33634810|emb|CAE20796.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 280

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 11/268 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K   Q++L+D  +L +I +++       ++E+G G G LT+ LL   A  V  +E
Sbjct: 5   GHHARKRFAQHWLIDAAVLTQILDAADVQPDDRLLEVGPGRGALTERLLASSASAVHAVE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     LK   +    R  + + D L V      +  +  +++AN+PYNI   LL   
Sbjct: 65  LDRDLVSGLKQRFADQA-RFSLQEGDVLSVPL-TLADGRAATKVVANIPYNITGPLLERL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     P    ++ L LL QKEV +RI A      +  LSV      + T +  + P  F
Sbjct: 123 LGRLDRPVDHPYQRLVLLLQKEVAQRIRALPGQSCFSALSVRLQLLARCTTVCPVPPRSF 182

Query: 196 FPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S VI   P        P   + ++ + ++AF  RRK LR +L ++     L+ 
Sbjct: 183 KPPPKVHSEVILIEPLAPEQRLEPLLAKRVESLLRQAFLARRKMLRNTLAKVLPAAELNA 242

Query: 253 ----AGIETNLRAENLSIEDFCRITNIL 276
                GI    R + LS   +  +   L
Sbjct: 243 LADDLGISLQQRPQELSPATWVELARGL 270


>gi|257469508|ref|ZP_05633600.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185]
 gi|317063752|ref|ZP_07928237.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185]
 gi|313689428|gb|EFS26263.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185]
          Length = 264

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 17/263 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL D   +L+KI E S   +  TV+EIG G G LT +LL   A KV+ +E
Sbjct: 3   FKHKKKFGQNFLTDQKEVLRKIMEVSAVNENDTVLEIGPGEGALTALLLDT-AEKVVTVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+    IL+     +P +  ++ +D L+ D +++       +++AN+PY I + ++   
Sbjct: 62  IDRDLEKILRKKFDGNP-KYTLVMNDVLETDLKEYVGAG--TKVVANIPYYITSPIINKL 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         + + ++ QKEV ERI A+K       L++   +  +A  +F I    F P
Sbjct: 119 IENRD---VIDEIYIMVQKEVAERICAKKG-KERSVLTLAVEYFGEAEYLFTIPKEAFTP 174

Query: 198 SPKVTSTVIHF---IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----L 249
            PKV S  +                +   K  + AF  +RK L  +   LG        +
Sbjct: 175 IPKVDSAFMSIKLYKDDKYKKLVAEDIFFKYVKAAFANKRKNLLNNFTSLGMSKDELRVV 234

Query: 250 LHQAGIETNLRAENLSIEDFCRI 272
           L++ GI+   RAENL+IEDF  +
Sbjct: 235 LNEVGIKETERAENLTIEDFINL 257


>gi|303244670|ref|ZP_07331002.1| dimethyladenosine transferase [Methanothermococcus okinawensis IH1]
 gi|302484978|gb|EFL47910.1| dimethyladenosine transferase [Methanothermococcus okinawensis IH1]
          Length = 279

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 29/274 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K +GQ FL D NI+KK   ++       V+EIG G G LT+ L    A+KV VIE D +
Sbjct: 11  NKKLGQCFLKDKNIVKKAVNAADINKNDIVLEIGLGKGILTKELAK-NAKKVYVIELDMR 69

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P  +++ +++PN +EII +DALKV+ ++     +  +I+ANLPY I + + F ++  D
Sbjct: 70  LEPFAEEVIAEYPN-VEIIWNDALKVNLDEL----NFNKIVANLPYQISSPITFKFLKKD 124

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                ++   L++Q E  +R+ A++ +  YGRLSV   +      +  +SP  F P PKV
Sbjct: 125 -----FDVAVLMYQYEFAKRMIAKEGTKEYGRLSVSVQYYANVQFVCKVSPSAFSPKPKV 179

Query: 202 TSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI--- 255
            S ++                E  + + +  F  + KT +++L     E  L++  I   
Sbjct: 180 DSAIVKITKKEPNELYYLEDKEFFENVVRALFQHKNKTAKKALINSCHEMGLNRDEIKNM 239

Query: 256 ------------ETNLRAENLSIEDFCRITNILT 277
                       + N R   L+IE    ++N+L 
Sbjct: 240 IDTLNNLNLSKFDLNERVFTLNIEKIVELSNMLY 273


>gi|83025311|gb|ABB95748.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L
Sbjct: 1   PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           +  GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +           
Sbjct: 61  IGNGARQVVVIEKDDRFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120

Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              IR+++NLP+NI    L   I       + +        L FQKEV ERI AQ    +
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RLSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    
Sbjct: 181 RSRLSVLCQNYAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240

Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           F  ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|66810281|ref|XP_638864.1| dimethyladenosine transferase [Dictyostelium discoideum AX4]
 gi|74854506|sp|Q54QK7|DIMT1_DICDI RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|60467487|gb|EAL65509.1| dimethyladenosine transferase [Dictyostelium discoideum AX4]
          Length = 314

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 123/297 (41%), Gaps = 42/297 (14%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
             H++    K  GQ+ L +  I+  I + S      TV+EIG G GNLT  LL    +KV
Sbjct: 22  ARHHEFQMNKSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLE-NCKKV 80

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I IE D +    L+   +  P    L+II  D LKVD   F         +AN+PY I +
Sbjct: 81  IAIEVDPRMAAELQKRVAASPYAQHLQIILGDFLKVDLPYF------DVCVANVPYQISS 134

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L F  ++     P + +  L+FQKE   R+ A+     Y RLSV T   +K T +  + 
Sbjct: 135 PLTFKLLAHR---PIFRTAVLMFQKEFALRLGAKPGDSLYCRLSVNTQLLSKVTHLMKVG 191

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--------- 242
            + F P PKV S V+   P   P P        + +  F ++ KTL    +         
Sbjct: 192 KNNFLPPPKVESAVVRIEPFNPPPPINFVEWDGLVKLCFSRKNKTLSGIFRVSSVIETLN 251

Query: 243 --------------RLGGENLLHQAGIE-------TNLRAENLSIEDFCRITNILTD 278
                           G +  + +  I+        + R+  L I DF ++ N   +
Sbjct: 252 QNYKTYCALEGKMNTDGSDEQMKELIIKTLTDNDFLDSRSSKLDINDFLKLLNKFHE 308


>gi|224532232|ref|ZP_03672864.1| dimethyladenosine transferase [Borrelia valaisiana VS116]
 gi|224511697|gb|EEF82103.1| dimethyladenosine transferase [Borrelia valaisiana VS116]
          Length = 284

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 14/281 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K  L   KI P+K  GQN+L++ NI +KI ES    +   + EIG G G
Sbjct: 11  MKINYNSITSIKQTLKERKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLG 70

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL      +   E D ++  IL +   +  N  ++I+ D LK    +  NI    
Sbjct: 71  AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYTNENKNID--- 125

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +VL  
Sbjct: 126 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTVQKELADRITAKINSKNYSSFTVLVQ 181

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI  H F+P PKV ST +  IP  N I    +   K+ +  F  RRK L+ 
Sbjct: 182 SHFTVIKIIDIGEHNFYPVPKVRSTTLKLIPKENNI-KDFKEFNKLIRTVFSNRRKKLKN 240

Query: 240 SLKR-LGGENLLHQAGIET--NLRAENLSIEDFCRITNILT 277
           ++   +  ++ L +  ++   + R EN+S+E+F +I+N LT
Sbjct: 241 TIINFIANKDTLRENFLKEYLDKRPENISVEEFIQISNTLT 281


>gi|219684472|ref|ZP_03539416.1| dimethyladenosine transferase [Borrelia garinii PBr]
 gi|219672461|gb|EED29514.1| dimethyladenosine transferase [Borrelia garinii PBr]
          Length = 281

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 149/284 (52%), Gaps = 14/284 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K IL   KI P+K  GQN+L++ +I +KI ES    +   + EIG G G
Sbjct: 8   MNINYNSITSIKQILKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLG 67

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL      +   E D ++  IL +   +  N  ++I+ D  K    +  NI    
Sbjct: 68  AMTDILLK-KTNFLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFFKKYPNENKNID--- 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + + L  QKE+ +RITA+ NS +Y   +VL  
Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTVLVQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
               A  + DI    F+P+PKV ST +  IP  N I    +   K+ +  F  RRK L+ 
Sbjct: 179 SHFTAIKIIDIGESNFYPAPKVKSTTLKLIPKKNNI-KDFKEFNKLIRTVFSSRRKKLKN 237

Query: 240 SLKR-LGGENLLHQAGIET--NLRAENLSIEDFCRITNILTDNQ 280
           ++   +  + +L +  ++   + R EN+S+E+F +I+N LT + 
Sbjct: 238 TIINFIKNKAILEENFLKEYLDKRPENISVEEFIQISNTLTAHH 281


>gi|225709718|gb|ACO10705.1| Probable dimethyladenosine transferase [Caligus rogercresseyi]
          Length = 313

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 122/264 (46%), Gaps = 17/264 (6%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
               +     +GQ+ L +  I+  I + SG     TV+EIG G GNLT  LL +  ++VI
Sbjct: 24  GRQGLQFNTTLGQHILKNPAIVDSIIDKSGLRPTDTVLEIGPGTGNLTAKLLQV-VKRVI 82

Query: 75  VIEKDQQFFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           VIE D +    ++      P+R  LEI+  DA+K D   FF++      +AN+PY I + 
Sbjct: 83  VIEVDPRMVSEIQKRFQHSPHRPKLEILVGDAIKTDLP-FFDVC-----VANVPYQISSP 136

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           L+F  +      PF+ +  L+FQ+E   R+ A      + RLS+ T   +    +  +  
Sbjct: 137 LVFKLL---IHRPFFRAAILMFQREFALRLIAPPGDKLFCRLSINTQLLSTVHHLLKVGR 193

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           + F P PKV S+V+       P P   +    +T+  F ++ KTL  +  +      L +
Sbjct: 194 NNFRPPPKVESSVVRIEHKNPPPPINFKEWDGLTRICFVRKNKTLGAAFSQTPVLMTLDK 253

Query: 253 -----AGIETNLRAENLSIEDFCR 271
                  ++  +  E  SI+D   
Sbjct: 254 NYRTHLSLKEEMVPEEFSIKDLIE 277


>gi|83025307|gb|ABB95746.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L
Sbjct: 1   PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           +  GAR+V+VIEKD +F   L+ +    P R+ I   D LKV+  KF +           
Sbjct: 61  IGNGARQVVVIEKDARFLGPLRLLQEAAPGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120

Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              IR+++NLP+NI    L   I       + +        L FQKEV ERI A     +
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAPPGDRN 180

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RLSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    
Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240

Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           F  ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|328954956|ref|YP_004372289.1| dimethyladenosine transferase [Coriobacterium glomerans PW2]
 gi|328455280|gb|AEB06474.1| dimethyladenosine transferase [Coriobacterium glomerans PW2]
          Length = 313

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 27/290 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              + + +L  + +  K  +GQ+FL+D +++++I   +       V+E+G G G LT  L
Sbjct: 8   SPTATRELLDEFGLTTKHRLGQHFLIDDHVVERIVRLAELDANARVVEVGPGIGTLTLAL 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIA 123
           L   AR V+ IE D    P+L    + HP+ L  I  DAL+V F         +P  ++A
Sbjct: 68  LPRVAR-VVAIEMDPALEPVLAMHVADHPD-LSYIIGDALRVGFRAIAAEAGGAPTMLVA 125

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPYN    ++ +++         ES  ++ QKEV +RI AQ  +  YG  +       +
Sbjct: 126 NLPYNAAATIILDYLE---HMDSLESAVVMVQKEVADRIAAQPGTKSYGAYTAKLRLIGE 182

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPH----LNPIPC-----------CLESLKKITQE 228
            T  F++S   F P P+V S+V+             PC               +  +   
Sbjct: 183 LTDRFEVSRLSFMPPPRVESSVVRIERAHRAGERLGPCLAGASAGTGAVAPAQVASVIDA 242

Query: 229 AFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           AF +RRKT+R S+   G      +  L  + I  ++RAE L  +DF R+T
Sbjct: 243 AFAQRRKTIRNSMTARGFDREMLDEALGASRIAPSIRAEALDTDDFIRLT 292


>gi|51598843|ref|YP_073031.1| dimethyladenosine transferase [Borrelia garinii PBi]
 gi|62900508|sp|Q660T2|RSMA_BORGA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|51573414|gb|AAU07439.1| dimethyladenosine transferase [Borrelia garinii PBi]
          Length = 281

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 148/280 (52%), Gaps = 14/280 (5%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K IL   KI P+K  GQN+L++ +I +KI ES    +   + EIG G G
Sbjct: 8   MNINYNSITSIKQILKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLG 67

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL      +   E D ++  IL +   +  N  ++I+ D LK    +  NI    
Sbjct: 68  AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYPNENKNID--- 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + + L  QKE+ +RITA+ NS +Y   +VL  
Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKTNSKNYSSFTVLVQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
               A  + DI  + F+P+PKV ST +  IP  N I    +   K+ +  F  RRK L+ 
Sbjct: 179 SHFTAIKIIDIGENNFYPAPKVKSTTLKLIPKKNNI-KDFKEFNKLIRTVFSGRRKKLKN 237

Query: 240 SLKR-LGGENLLHQAGIET--NLRAENLSIEDFCRITNIL 276
           ++   +  + +L +  ++     R EN+S+E+F +I+N L
Sbjct: 238 TIINFIKNKAILEENFLKEYLGKRPENISVEEFIQISNNL 277


>gi|289185434|gb|ADC91854.1| dimethyl adenosine transferase [Paenibacillus popilliae]
          Length = 224

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 9/219 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
               K I+  +    KK +GQNFL+D+NI+++I +++        +EIG G G LT+ L+
Sbjct: 11  PSRTKEIVRKHGFSFKKSLGQNFLVDMNIMRRIVDAAEPDSVTGALEIGPGIGALTEQLV 70

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS----SPIRII 122
              + +V  +E DQ+  PIL ++   +PN + ++  D LKVD  + F         + ++
Sbjct: 71  QQ-SGQVAAVEIDQRLIPILGEVLEPYPN-VRVVHGDVLKVDLGELFRDQFQAMDKVSVV 128

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY + T +L   +         +++ ++ QKEV ERI AQ  S  YG LSV   + +
Sbjct: 129 ANLPYYVTTPILMRLLEERLP---VKNIVVMIQKEVAERIAAQPGSKDYGSLSVAIQYFS 185

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES 221
           +  ++  + P VF P P V S VI       P     + 
Sbjct: 186 EPQLVCIVPPSVFIPQPNVESAVIKLRIREQPPVEARDE 224


>gi|145545245|ref|XP_001458307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426126|emb|CAK90910.1| unnamed protein product [Paramecium tetraurelia]
          Length = 353

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 12/245 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K  +S   ++  K  GQ+ L++  IL+ I + S       V+EIG G GNLT++LL   
Sbjct: 1   MKNTVSKSNMVFNKSFGQHILINQQILQMIVDKSAIRPTDIVLEIGPGTGNLTELLLQR- 59

Query: 70  ARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           A++VI +E D +    L      SQ+ ++ ++IQ D L  +   FF++      +AN+PY
Sbjct: 60  AKQVICVEIDPRMVIELTKRFKYSQYSDKFKLIQGDFLTAELP-FFDLC-----VANVPY 113

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + L+F  ++     P W    L+FQ+E   R+ A+  +  Y RLS      ++   +
Sbjct: 114 QISSPLVFKLLAQR---PLWRCAVLMFQQEFAFRLVAKPGNELYCRLSANVQMLSRVDHL 170

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
             +  + F P PKV S+V+   P              + +  F ++ K L    K     
Sbjct: 171 MKVGKNNFKPPPKVESSVVRIEPKNPIPNINYIEWDGLLRICFNRKNKQLSAIFKNKSVL 230

Query: 248 NLLHQ 252
             L  
Sbjct: 231 KTLEH 235


>gi|253582223|ref|ZP_04859446.1| dimethyladenosine transferase [Fusobacterium varium ATCC 27725]
 gi|251835762|gb|EES64300.1| dimethyladenosine transferase [Fusobacterium varium ATCC 27725]
          Length = 264

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 132/263 (50%), Gaps = 17/263 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL D   +L+KI E S   +  T++EIG G G LT +LL   A+KV+ +E
Sbjct: 3   FKHKKKFGQNFLTDQKEVLRKIMEVSDVNENDTILEIGPGEGALTALLLD-KAQKVVAVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+    IL+   + +P +  ++ +D L+ D +++  +   I+++AN+PY I + ++   
Sbjct: 62  IDRDLEKILRKKFNDNP-KYTLVMNDVLETDLKEYLTLG--IKVVANIPYYITSPIINKL 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         + + ++ QKEV ERI A+K       L++   +  KA  +F I    F P
Sbjct: 119 IENRE---IIDEIYIMVQKEVAERICARKG-KERSVLTLAVEYFGKAEYLFTIPKEAFTP 174

Query: 198 SPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NL 249
            PKV S  +    + +         +   K  + AF  +RK L  +   LG        +
Sbjct: 175 IPKVDSAFMSIKLYKDDKYKKIIEEDIFFKYVKAAFANKRKNLLNNFTALGISKDELRKI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRI 272
           L +AGI+   RAENL+IEDF  +
Sbjct: 235 LSEAGIKETERAENLTIEDFINL 257


>gi|119961382|ref|YP_947119.1| dimethyladenosine transferase [Arthrobacter aurescens TC1]
 gi|166987690|sp|A1R4F7|RSMA_ARTAT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|119948241|gb|ABM07152.1| dimethyladenosine transferase [Arthrobacter aurescens TC1]
          Length = 293

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     + P K +GQNF++D N +++I  ++   D  TV+E+G        + L
Sbjct: 17  ATDIRRLAEEIGVRPTKTLGQNFVIDGNTIRRIVAAAAIGDDETVLEVGP-GLGSLTLGL 75

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A+ V+ +E D      L +              ++  DA+KV          P  ++
Sbjct: 76  LDAAKAVVAVEIDPVLAEKLPETVRAWRPGAEENFHLVLSDAMKVTELPL----PPTALV 131

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + +      P  +   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 132 ANLPYNVAVPVVLHLL---QHFPSLQHGLVMVQDEVADRLAATPGSKIYGVPSVKAAWYG 188

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241
                  I  +VF+P+PK+ S ++ F  H  P      E +  +   AF +RRKTLR +L
Sbjct: 189 HMRKAGVIGMNVFWPAPKIHSGLVAFTRHDPPETHATREQVFAVIDAAFAQRRKTLRAAL 248

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E  L  AG++   R E L I  + +I   
Sbjct: 249 AGWAGSASEAERCLVAAGLDPTARGEVLDINAYVKIAEA 287


>gi|94269962|ref|ZP_01291617.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1]
 gi|93450994|gb|EAT01969.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1]
          Length = 288

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 92/277 (33%), Positives = 131/277 (47%), Gaps = 16/277 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + ILS +K+ P K  GQNFL+   + ++I E +      TV+E+G G G LT+ L    A
Sbjct: 7   QKILSQHKLAPSKQRGQNFLVQPAVAERIVEVAEIEPTATVVELGVGLGALTRPLAARCA 66

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIRIIANLPYNI 129
            KVI +E D       +  S + P  +E+   D L+ D+          I+IIANLPY+I
Sbjct: 67  -KVIGLELDAGIVNYHRQ-SGELPANVELRHQDLLRADYPAMAAEQGGKIKIIANLPYSI 124

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              LLF  +       +   + L+ QKEV +R+ A   S  YG L+VL G       +  
Sbjct: 125 TNPLLFRLLVQRRALDW---VVLMIQKEVADRLVAAVGSKEYGVLTVLLGACATVERLLA 181

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL---KKITQEAFGKRRKTLRQSLKRLGG 246
           + P  FFP PKV S VI       P           +++   AF +RRKTL  SL     
Sbjct: 182 VGPGNFFPRPKVDSVVIRLDFRNFPHVPDDAEFGRLRRVVDAAFNQRRKTLLNSLSAGLP 241

Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E         L  A +++ LRAE L+  DF R++  L
Sbjct: 242 ELDRETIAAALAAAELDSGLRAERLTTADFRRLSAKL 278


>gi|225551958|ref|ZP_03772898.1| dimethyladenosine transferase [Borrelia sp. SV1]
 gi|225370956|gb|EEH00386.1| dimethyladenosine transferase [Borrelia sp. SV1]
          Length = 281

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 14/280 (5%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K  L   KI P+K  GQN+L++ +I +KI ES    +   + EIG G G
Sbjct: 8   MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGIG 67

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T++LL      +   E D ++  IL +   +  N  ++I+ D LK    +  NI    
Sbjct: 68  AMTEILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFLKKYKNENQNID--- 122

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + +    QKE+ +RITA+ NS +Y   +VL  
Sbjct: 123 KIFSNLPYNIASKVISKLIEEN----FLKEMVFTIQKELADRITAKINSKNYSSFTVLVQ 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
               A  + DI    F+P+PKV ST +  +P  N I    +   K+ +  F  RRK L+ 
Sbjct: 179 SHFNAIKILDIGESNFYPAPKVKSTTLKLVPKKNNI-KNFKEFNKLVRTVFSSRRKKLKN 237

Query: 240 SLKR-LGGENLLHQAGIET--NLRAENLSIEDFCRITNIL 276
           ++   +  +  L +  ++   + R EN+S+E+F +I+N L
Sbjct: 238 TIINFIANKATLRENFLKEYLDKRPENISVEEFIQISNTL 277


>gi|269957508|ref|YP_003327297.1| dimethyladenosine transferase [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306189|gb|ACZ31739.1| dimethyladenosine transferase [Xylanimonas cellulosilytica DSM
           15894]
          Length = 303

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 123/276 (44%), Gaps = 15/276 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF+ D   ++KI  ++G   G  V+E+G G G+LT  LL
Sbjct: 11  PAEIRELAGRLGVRPTKTLGQNFVHDAGTVRKIVRAAGLRPGQRVVEVGPGLGSLTLGLL 70

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
             GA  V+ +E D      +     +H      E++  DAL V          P  ++AN
Sbjct: 71  EAGA-SVVAVEIDPVLAGEIPATVQRHLPGADFEVVLSDALDVRT---LPGEPPTALVAN 126

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L   +         ES+ ++ Q EV +RI A   S  YG  SV   W  +A
Sbjct: 127 LPYNVAVPVLLTMLER---FDSLESVLVMVQAEVADRIAAAPGSKIYGIPSVKAAWYARA 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKR 243
                +S +VF+P P V S ++       P      E +  +   AF +RRKTLR +L  
Sbjct: 184 WRSLTVSRNVFWPVPNVDSALVALERRDPPTTAATREQVFTVVDAAFAQRRKTLRAALSG 243

Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274
           L G        L  A ++   R E L +  F RI  
Sbjct: 244 LFGSGPAAEAALRAADVDPGARGETLDVTAFARIAE 279


>gi|147864926|emb|CAN81538.1| hypothetical protein VITISV_011853 [Vitis vinifera]
          Length = 336

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 28/242 (11%)

Query: 15  SHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
            HY   +   K  GQ+ L +  ++  I E SG      ++EIG G GNLT+ LL  G + 
Sbjct: 19  KHYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KS 77

Query: 73  VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           VI +E D +    L+      P  NRL++IQ D L+ D   F         +AN+PY I 
Sbjct: 78  VIAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLPYF------DICVANIPYQIS 131

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + L F  ++     P +    ++FQ+E   R+ AQ     Y RLS              +
Sbjct: 132 SPLTFKLLAHR---PVFRCAVIMFQREFAMRLVAQPGDNLYCRLS--------------V 174

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             + F P PKV S+V+   P     P   +    + +  F ++ KTL    ++    +LL
Sbjct: 175 GKNNFRPPPKVDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTLGSIFRQKSVLSLL 234

Query: 251 HQ 252
            +
Sbjct: 235 EK 236


>gi|312144343|ref|YP_003995789.1| dimethyladenosine transferase [Halanaerobium sp. 'sapolanicus']
 gi|311904994|gb|ADQ15435.1| dimethyladenosine transferase [Halanaerobium sp. 'sapolanicus']
          Length = 295

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 99/297 (33%), Positives = 150/297 (50%), Gaps = 22/297 (7%)

Query: 3   MNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M NK       K IL  Y +  KK +GQNFL+D NI+  I  ++       +IEIG G G
Sbjct: 1   MLNKIATPSETKKILKEYDLRLKKGLGQNFLIDYNIIDIIINAAEIDGDELLIEIGPGIG 60

Query: 60  NLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF--NIS 116
           +LTQ LL  L   K+I IEKD +   +LK+I  Q  N+L+++ +DAL ++++K    N  
Sbjct: 61  SLTQALLEELKDGKLIAIEKDAEMVKVLKEIFPQ-QNKLKLLNEDALAIEWKKIAKENKG 119

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             I++IANLPY + T ++ + + ++      E +  + QKEVGER+++   +  +G LSV
Sbjct: 120 MGIKVIANLPYYVTTPIIMSILESEI---ELEKMIFMVQKEVGERMSSGPGTKKFGSLSV 176

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGK 232
              +  K  ++  +   VF P P V S ++   P+            E   +I +  F +
Sbjct: 177 AVQYHMKPEIVHQVPSSVFLPQPDVDSVIVSLTPYSENPHQKKVIDQEFFFQIVKSIFQQ 236

Query: 233 RRKTLRQSLKRLGGENL--------LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           RRKTLR SL +    NL        L   GI    R E L I +   ITN L   ++
Sbjct: 237 RRKTLRNSLSKSAVINLDRDLVTKALELEGIGLKKRGEKLEISEMISITNRLYKMRN 293


>gi|124023319|ref|YP_001017626.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9303]
 gi|166221689|sp|A2CA51|RSMA_PROM3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|123963605|gb|ABM78361.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 280

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 117/268 (43%), Gaps = 11/268 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K   Q++L+D  +L +I +++       ++E+G G G LT+ LL   A  V  +E
Sbjct: 5   GHHARKRFAQHWLIDAAVLTQILDAADVQPDDRLLEVGPGRGALTERLLASSASAVHAVE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   +    R  + + D L V      +  +  +++AN+PYNI   LL   
Sbjct: 65  LDRDLVSGLRQRFADQA-RFSLQEGDVLSVPL-TLADGRAANKVVANIPYNITGPLLERL 122

Query: 138 ISADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +     P    ++ L LL QKEV +RI A      +  LSV        T +  + P  F
Sbjct: 123 LGRLDRPVDHPYQRLVLLLQKEVAQRIRALPGQSCFSALSVRLQLLAHCTTVCPVPPRSF 182

Query: 196 FPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S VI   P        P   + ++ + ++AF  RRK LR +L ++     L+ 
Sbjct: 183 KPPPKVHSEVILIEPLAPEQRLEPLLAKRVESLLRQAFLARRKMLRNTLAKVLPAAELNA 242

Query: 253 ----AGIETNLRAENLSIEDFCRITNIL 276
                GI    R + LS   +  +   L
Sbjct: 243 LADDLGISLQQRPQELSPATWVELARGL 270


>gi|124087844|ref|XP_001346899.1| Ribosomal RNA adenine dimethylase [Paramecium tetraurelia strain
           d4-2]
 gi|145474821|ref|XP_001423433.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057288|emb|CAH03272.1| Ribosomal RNA adenine dimethylase, putative [Paramecium
           tetraurelia]
 gi|124390493|emb|CAK56035.1| unnamed protein product [Paramecium tetraurelia]
          Length = 353

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 12/245 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K  +S   ++  K  GQ+ L++  IL+ I + S       V+EIG G GNLT++LL   
Sbjct: 1   MKNTVSKSNMVFNKSFGQHILINQQILQMIVDKSAIRPTDIVLEIGPGTGNLTELLLQR- 59

Query: 70  ARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           A++VI +E D +    L      SQ+ ++ ++IQ D L  +   FF++      +AN+PY
Sbjct: 60  AKQVICVEIDPRMVIELTKRFKYSQYSDKFKLIQGDFLTAELP-FFDLC-----VANVPY 113

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + L+F  ++     P W    L+FQ+E   R+ A+  +  Y RLS      ++   +
Sbjct: 114 QISSPLVFKLLAQR---PLWRCAVLMFQQEFAFRLVAKPGNELYCRLSANVQMLSRVDHL 170

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
             +  + F P PKV S+V+   P              + +  F ++ K L    K     
Sbjct: 171 MKVGKNNFKPPPKVESSVVRIEPKNPIPNINYIEWDGLLRICFNRKNKQLSAIFKNKSVL 230

Query: 248 NLLHQ 252
             L  
Sbjct: 231 KTLEH 235


>gi|239616459|ref|YP_002939781.1| dimethyladenosine transferase [Kosmotoga olearia TBF 19.5.1]
 gi|239505290|gb|ACR78777.1| dimethyladenosine transferase [Kosmotoga olearia TBF 19.5.1]
          Length = 272

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 95/270 (35%), Positives = 140/270 (51%), Gaps = 12/270 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +  IL  Y I  K  +GQNF+ D  IL +I + SG  D  TVIEIG G G L  + L   
Sbjct: 3   ITDILRKYGIHLKDSLGQNFIKDERILSRIVKDSGITDEATVIEIGIGLGTL-TLKLAKK 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           A+KVI  E D++F  I K++ S     ++II +D LK D + +   S P+  +AN+PY I
Sbjct: 62  AKKVIGFEIDKRFEQIHKELLS--DKNIQIIYEDFLKADLKDY--DSRPLFYVANIPYYI 117

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + +L   +      P +E+  L+ QKE  ER+ A+ +S  YG L+V  G  T    +F+
Sbjct: 118 TSPILEKILFE---GPAFEAAILMVQKEYAERLLAKPSSKSYGALTVTIGAFTMVRRLFN 174

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRL--G 245
           +S   F P+P V S+V+  I     +    E    +   + AF  RRK L+ +LK +   
Sbjct: 175 VSRKAFIPAPAVDSSVVKLIMREQTLVPLNEKRRFRNFVKLAFSHRRKKLKNNLKPIIDN 234

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNI 275
            E  L   G   N+RAE L+IE F ++   
Sbjct: 235 PEEFLRSLGFSVNVRAEELTIESFVKLYEA 264


>gi|269216111|ref|ZP_06159965.1| dimethyladenosine transferase [Slackia exigua ATCC 700122]
 gi|269130370|gb|EEZ61448.1| dimethyladenosine transferase [Slackia exigua ATCC 700122]
          Length = 292

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 131/284 (46%), Gaps = 18/284 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
             + +  L+ + +  KK +GQNFL+   I+ KI E +    G  V+E+G G G LT  L 
Sbjct: 10  PSATRAALARHGLAAKKALGQNFLIHDAIVGKICELAQVDAGDDVLEVGPGIGTLTVALC 69

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
              AR V  IE+D+   P+L++      N   +   DAL+V  +     + P +++ANLP
Sbjct: 70  AR-ARAVHAIERDRDLAPVLEESCWNFDN-FTLHMGDALQVGSDDLGGFA-PTKLVANLP 126

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y +   L+ ++       P   S+T++ Q EV +R+ A   +  Y   SV    R +AT 
Sbjct: 127 YAVAATLVLDFFDR---FPSMRSMTVMVQSEVADRMAASLGTKDYAAYSVKLALRAQATG 183

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
            F+++P  F P+P V+S VI      +  P  +         AF  RRKT+  S+K    
Sbjct: 184 RFEVAPSNFMPAPHVSSAVIRLDRVQDHAPDDVALASVAADAAFAARRKTIANSMKAYFS 243

Query: 247 E------------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                        + L  AGI+   R E LS+++F  +      
Sbjct: 244 RPGSRHLEAADIVHALETAGIDARRRGETLSLDEFIALGRACAS 287


>gi|309792566|ref|ZP_07687028.1| dimethyladenosine transferase [Oscillochloris trichoides DG6]
 gi|308225380|gb|EFO79146.1| dimethyladenosine transferase [Oscillochloris trichoides DG6]
          Length = 285

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 125/291 (42%), Gaps = 25/291 (8%)

Query: 3   MNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M N       ++  L    + P + MGQNFL+D   L  I +++       V+E+G G G
Sbjct: 1   MQNPYLIPQRVRAALRTLDLRPTRGMGQNFLIDQLALDTIVQAAELTPDDLVVEVGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSP 118
            LT  L+ +  +  + +E D++    L +  +  P  L IIQ D L+        +++ P
Sbjct: 61  VLTWELVRVARQV-VAVELDRRLAARLHEEFATAP--LRIIQADVLRTPPAAILDDLAPP 117

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
            +++ANLPY I   +L +++     P     + +L Q EV ERI AQ        L+   
Sbjct: 118 YKLVANLPYAITAPVLRHFLEGQPPPDV---MVVLVQWEVAERICAQPGDL--SVLAHAV 172

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKT 236
              T+  ++  +    F P+P V S ++             +  +L +I +  F + RK 
Sbjct: 173 QIYTQPEIIARVPASSFHPAPAVDSAILRMRRRPQLAVAVDDVAALFRIIKAGFLQPRKQ 232

Query: 237 LRQ-----------SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           L             SL R      LH A I+   RAE L++ ++  I   L
Sbjct: 233 LGNALPGGLAAIGSSLPRDEVVAALHSANIDPKRRAETLTLHEWATIYQAL 283


>gi|121711417|ref|XP_001273324.1| dimethyladenosine transferase [Aspergillus clavatus NRRL 1]
 gi|119401475|gb|EAW11898.1| dimethyladenosine transferase [Aspergillus clavatus NRRL 1]
          Length = 393

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 9/239 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  I   I + +      TV+E+G GPG LT  +L   A+KV+ +E 
Sbjct: 34  FKFNTDIGQHILKNPTIADAIVDKANIQPSQTVLEVGPGPGILTTRIL-QKAKKVVAVEL 92

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +L+I+  D +K D  K          I+N PY I + L+F 
Sbjct: 93  DPRMAAELTKTVQATPAEKKLQIVLGDFVKTDLSKL---PPFQICISNTPYQISSPLIFK 149

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S    P   ++  L+ Q+E   R+ A+     Y RLSV   + ++ + +  +  + F 
Sbjct: 150 LLSMPNPP---KTCVLMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHIMKVGKNNFR 206

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P P+V S+V+   P  +      +    + +  F ++ KTLR          L+ +  I
Sbjct: 207 PPPQVESSVVRVEPKADRPDISWDEWDGMLRICFVRKNKTLRAGFMGTKVRALIERNWI 265


>gi|326436805|gb|EGD82375.1| dimethyladenosine transferase 1 [Salpingoeca sp. ATCC 50818]
          Length = 321

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 87/312 (27%), Positives = 136/312 (43%), Gaps = 35/312 (11%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S+  +L  Y +   K + QNFLLD +I  K    +G L    VIE+G GPG+LT+ +
Sbjct: 5   PVPSVAQLLRLYGVRALKDLSQNFLLDPSITDKFVRHAGKLKDKVVIEVGGGPGSLTRSI 64

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------------- 112
           L    RK+ VIEKD +  P+L  ++       EII  DAL +D+E+              
Sbjct: 65  LKAQPRKLYVIEKDTRMLPMLDLVAEASGGVAEIIPGDALHIDYEQLITQANVATQPTAA 124

Query: 113 --------FNISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVG 159
                       + + II NLP+ I T L+ +++         +     +LTL FQ+EVG
Sbjct: 125 EGADSSAAAPAETDLHIIGNLPFGIATPLILSYLRQLSRRDSAFARSRPTLTLCFQREVG 184

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--- 216
           ERI A   +    R+SV++         F I    F P+PKV + V+ F P         
Sbjct: 185 ERICAPPRTKPRSRISVISQLYADVRPAFVIPSTAFVPAPKVEAMVVSFRPREQLPEGLE 244

Query: 217 -CCLESLKKITQEAFGKRRKTLRQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFC 270
               + ++++ +  +G R K LR    +        +++L  AG     RA  LS   + 
Sbjct: 245 QLTFDQMERVLRIGYGSRLKRLRHVFSKHVGGLQAADDMLASAGFPAETRAFFLSTRQWI 304

Query: 271 RITNILTDNQDI 282
            +      +Q  
Sbjct: 305 DLATAFYQHQSA 316


>gi|328855713|gb|EGG04838.1| hypothetical protein MELLADRAFT_49047 [Melampsora larici-populina
           98AG31]
          Length = 333

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 14/231 (6%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQ+ L +  + + I + +       V+E+G G GNLT  +L    +KV+V+E D +  
Sbjct: 50  KLGQHILKNPLVAQSIVDKANLKTTDQVLEVGPGTGNLTVKILE-KCKKVLVVEMDPRMA 108

Query: 84  PILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             L       P    +L+I+  D LK D   F         I+N PY I + L+F  ++ 
Sbjct: 109 SELSKRFQGKPQEMKKLDILVGDFLKTDLPYF------DVCISNTPYQISSPLVFKLLAH 162

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P +    L+FQ+E   R+ A+  S  + RLSV     +K   +  +    F P P 
Sbjct: 163 R---PIFRVAVLMFQREFALRLCARPGSSLWCRLSVNVQLYSKVNHLMKVGKANFRPPPL 219

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS-LKRLGGENLL 250
           V S+VI   P   P     E    +T+  F +R KT+R S       +++L
Sbjct: 220 VESSVIKLEPINPPPAIKFEEFDGLTRICFNRRNKTIRASFFASKAVKDML 270


>gi|27151557|sp|O59487|RSMA_PYRHO RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
          Length = 268

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 36/284 (12%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +LS Y I P+  +GQ+FL+  ++++K  E++   +   ++E+G G G LT  L    A+K
Sbjct: 8   LLSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAKR-AKK 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE DQ+   ILK   S   N ++IIQ DA++V++ KF       ++++N+PY I + 
Sbjct: 67  VYTIEIDQKIIEILKKEYS--WNNVKIIQGDAVRVEWPKF------NKVVSNIPYKISSP 118

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
             F  +  D     +E   +++Q E   R+ A+  S +Y RLS++        ++  I  
Sbjct: 119 FTFKLLKTD-----FERAVVMYQLEFALRMVAKPGSRNYSRLSLMAQALGNVEIVMKIGK 173

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
             F+P PKV S ++   P  + I       + + +  F  RRKT+ ++LK     + +H 
Sbjct: 174 GAFYPRPKVDSALVLIEPRKDKIVLN----ENLVKALFQHRRKTVPRALK-----DSIHM 224

Query: 253 AGI-------------ETNLRAENLSIEDFCRITNILTDNQDIA 283
            G+              +N R   L  E+   I   L  +  I+
Sbjct: 225 LGVSKDEIRGIINNVPHSNKRVFQLYPEEVKDIEEYLKKHGIIS 268


>gi|251773184|gb|EES53737.1| dimethyladenosine transferase [Leptospirillum ferrodiazotrophum]
          Length = 284

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 134/273 (49%), Gaps = 20/273 (7%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            P +Y+GQ+FL D  I ++I +S     L+    +EIG G   LT+ L     R +I++E
Sbjct: 13  SPARYLGQHFLTDDRIAQRIVDSLPTELLESTPTLEIGPGRMILTRHLARRSPR-LILVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           KD++  P L++   +   ++EI + DAL+   E      SP  +I+NLPYNI   LL   
Sbjct: 72  KDERLIPHLEESLREFGEKIEIRRGDALE---ENLVLEGSPYLVISNLPYNISVPLLLKI 128

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I     P       L+FQKEV ERITA   S  YG LSV     +    +FDI P  F P
Sbjct: 129 IGGTPPP---LMAVLMFQKEVAERITAPAGSKDYGSLSVAARLLSTPRHLFDIRPGSFTP 185

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            PKV S+V+ F+P        L     + + AF  RRKTL+ +LK+     ++    +  
Sbjct: 186 PPKVQSSVLSFVPAETRADPSLPGAFHLARAAFAYRRKTLKNALKQGLSPEIVEA--VSP 243

Query: 258 ---------NLRAENLSIEDFCRITNILTDNQD 281
                    + R ENLS ED+  +   L ++  
Sbjct: 244 LVEALPQGSDCRPENLSPEDWLFLARTLREHSP 276


>gi|237742501|ref|ZP_04572982.1| dimethyladenosine transferase [Fusobacterium sp. 4_1_13]
 gi|229430149|gb|EEO40361.1| dimethyladenosine transferase [Fusobacterium sp. 4_1_13]
          Length = 264

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 17/270 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL + N IL KI E S   D   ++EIG G G LT +L+    +KV  +E
Sbjct: 3   FKHKKKYGQNFLNNKNEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   S   N   ++  D L+VD  K+ N     +++AN+PY I + ++   
Sbjct: 62  IDKDLENTLRKKFSPKEN-YTLVMGDVLEVDLRKYINQG--TKVVANIPYYITSPIINKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         +   ++ QKEVGERI A+      G L++   +  ++  +F I    F P
Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGESEYLFTIPREFFNP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            P V S  I    + +         +   K  + AF  +RK +  +L  LG      + +
Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+Q  +  N RAEN+SI+ F  + NI    
Sbjct: 235 LNQIEVSENERAENISIDKFIELINIFESR 264


>gi|169765912|ref|XP_001817427.1| dimethyladenosine transferase [Aspergillus oryzae RIB40]
 gi|238482523|ref|XP_002372500.1| dimethyladenosine transferase [Aspergillus flavus NRRL3357]
 gi|83765282|dbj|BAE55425.1| unnamed protein product [Aspergillus oryzae]
 gi|220700550|gb|EED56888.1| dimethyladenosine transferase [Aspergillus flavus NRRL3357]
          Length = 392

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 10/253 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  I   I + +    G TV+E+G GPG LT  +L   A+KV+ +E 
Sbjct: 33  FKFNTDLGQHILKNGAIADAIVDKANIQQGQTVLEVGPGPGVLTNRILA-KAKKVVAVEV 91

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +L+I+  D +K D  +          I+N PY I + L+F 
Sbjct: 92  DPRMAAELTKNVQGTPAEKKLQIVLGDFVKTDLSQL---PPFQICISNTPYQISSPLIFK 148

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S    P   +   L+ Q+E   R+ A+     Y RLSV   + ++   +  +  + F 
Sbjct: 149 LLSMPNPP---KMCVLMVQREFALRLVARPGDSLYSRLSVNVQFFSRVQHIMKVGRNNFR 205

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S+V+   P  +      +    + +  F ++ KTLR          ++ +  I 
Sbjct: 206 PPPQVESSVVRVEPKSDRPAISWDEWDGMLRICFVRKNKTLRAGFMGNKTRAMIERNWIT 265

Query: 257 -TNLRAENLSIED 268
              +  E ++  D
Sbjct: 266 FATMYPEKVTQAD 278


>gi|328774301|gb|EGF84338.1| hypothetical protein BATDEDRAFT_22291 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 306

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 12/232 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K +GQ+ L +  ++  I + +       V+E+G G GN+T  +L   A+K IV+E D + 
Sbjct: 23  KSLGQHILKNPLVVNGIVDKACIKATDVVLEVGPGTGNVTVKILE-KAKKTIVVEMDPRL 81

Query: 83  FPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              L           +LE+I  D LKVD   F         I+N PY I + L F  +  
Sbjct: 82  AAELTKRVRGTAEQRKLEVIVGDFLKVDLPYF------DICISNTPYQISSSLTFKLLQH 135

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P W    L+FQ+E   R+ A+     Y RLS       K   +  +  + F P PK
Sbjct: 136 R---PLWRCSILMFQREFALRLVAKPGDALYCRLSANVQLLAKVDHVMKVGKNNFRPPPK 192

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           V S+V+   PH  P P   +    + +  FG++ +T+  + K      +L  
Sbjct: 193 VESSVVRIEPHNPPPPVNFDEWDGLLRILFGRKNRTVAANFKTSTVLEMLEH 244


>gi|83025301|gb|ABB95743.1| mitochondrial transcription factor B1 [Tigriopus californicus]
 gi|83025303|gb|ABB95744.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L
Sbjct: 1   PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           +  GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +           
Sbjct: 61  IGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120

Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              IR+++NLP+NI    L   I       + +        L FQKEV ERI AQ    +
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RLSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    
Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240

Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           F  ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|67464821|ref|XP_648602.1| dimethyladenosine transferase [Entamoeba histolytica HM-1:IMSS]
 gi|56464806|gb|EAL43214.1| dimethyladenosine transferase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 295

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 78/284 (27%), Positives = 122/284 (42%), Gaps = 40/284 (14%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQ+ L +  I ++I +++       V+EIG G GNLT  +L    +K+I IE 
Sbjct: 10  FQFHKSEGQHILKNPMIAQQIVDAAELRRTDVVLEIGPGTGNLTMKMLPFC-KKLIAIEI 68

Query: 79  DQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    LK   S   +  +LEIIQ D LKV+   F         ++N PY+I + L+F 
Sbjct: 69  DPRMAAELKKRVSVTDYVKKLEIIQGDFLKVELPYF------DVCVSNTPYSISSPLVFK 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++     P + S  L+FQ+E   R+ A+   P Y RLSV T        +  +  + F 
Sbjct: 123 LLNHR---PQFRSAVLMFQREFAMRLVAKPGDPLYCRLSVNTQLLADVFHVMKVGRNNFK 179

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---- 252
           P PKV S+V+  IP     P  L       +  F ++ KTL    +      ++ +    
Sbjct: 180 PPPKVESSVVRMIPVKPAPPLNLVEFDGFLRICFLRKHKTLSSLFRISSVLEVMEKNLRI 239

Query: 253 ------AGIETNL------------------RAENLSIEDFCRI 272
                   I+ NL                  RA  L+++DF  +
Sbjct: 240 IAKIRNIPIDENLDVKADVLQILEESGRAKSRAAQLTLDDFLEL 283


>gi|83583584|gb|ABC24676.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 365

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L
Sbjct: 11  PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 70

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           +  GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +           
Sbjct: 71  IGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 130

Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              IR+++NLP+NI    L   I       + +        L FQKEV ERI AQ    +
Sbjct: 131 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 190

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RLSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    
Sbjct: 191 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 250

Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           F  ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 251 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 310


>gi|332158063|ref|YP_004423342.1| dimethyladenosine transferase [Pyrococcus sp. NA2]
 gi|331033526|gb|AEC51338.1| dimethyladenosine transferase [Pyrococcus sp. NA2]
          Length = 271

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 139/287 (48%), Gaps = 39/287 (13%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +LS Y I PK  +GQ+F++  ++++K  E++   +   V+EIG G G LT  L    A+K
Sbjct: 8   LLSKYGIRPKDTIGQHFIIVEDVIRKAVETADVNEKDVVLEIGPGLGFLTNELAKR-AKK 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   ILK+      N +EII+ DA+K+++ +F       ++++N+PY I + 
Sbjct: 67  VYAIELDRKMIQILKNEYK--WNNVEIIEGDAIKLEWPEF------NKVVSNIPYQISSP 118

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
             F  +  D     +E   +++Q E   R+TA+  S +Y RLS++T       ++  I  
Sbjct: 119 FTFKLLKKD-----FELAVVMYQLEFALRMTARPGSKNYSRLSLMTQALADVEIVMKIGR 173

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
             F+P PKV S ++   P  + +       + + +  F  RRKT+ ++LK     + +H 
Sbjct: 174 GAFYPRPKVDSALVVIRPRKDKVELN----ENLVKALFQHRRKTVSRALK-----DSIHM 224

Query: 253 AGIE----------------TNLRAENLSIEDFCRITNILTDNQDIA 283
            GI                 ++ R   L   D   I   L ++  I+
Sbjct: 225 LGITKDKLKEIKHIIESVPYSSKRVFQLVPNDVKEIEEYLRNHGIIS 271


>gi|152965013|ref|YP_001360797.1| dimethyladenosine transferase [Kineococcus radiotolerans SRS30216]
 gi|259494252|sp|A6W6U4|RSMA_KINRD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|151359530|gb|ABS02533.1| dimethyladenosine transferase [Kineococcus radiotolerans SRS30216]
          Length = 300

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 125/277 (45%), Gaps = 16/277 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
            +  ++ +     I P K +GQNF++D N +++I   +       V+E+G G G+LT  L
Sbjct: 14  SARDVRDLADRLSIRPTKTLGQNFVVDANTVRRIVRVADLTPEDVVVEVGPGLGSLTLAL 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRII 122
           L     +V+ +E D      L    +         E++  DA+++          P  ++
Sbjct: 74  LE-AVDRVVAVEIDPVLAAELPATVAARGRPGTSFEVVLADAVQL---AELPGPPPTALV 129

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L   ++     P      ++ Q EV +R+ A   S  YG  SV T W  
Sbjct: 130 ANLPYNVAVPVLLTMLAR---FPSLRQGLVMVQSEVADRLVAPPGSRTYGVPSVKTAWYA 186

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241
            A     + P VF+P P+V S ++ F     P      E +  +   AF +RRKTLR +L
Sbjct: 187 SAKRAGSVPPPVFWPVPRVDSGLVSFTRRPAPETTAGREEVFALVDAAFAQRRKTLRAAL 246

Query: 242 KRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
               G        L  AG++ ++R E L + DF RI 
Sbjct: 247 AGWAGSPAAAEEALRAAGVDPSVRGEQLGVADFARIA 283


>gi|171911937|ref|ZP_02927407.1| dimethyladenosine transferase [Verrucomicrobium spinosum DSM 4136]
          Length = 441

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 120/267 (44%), Gaps = 10/267 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             PKK +GQNFL D  I K IA+         V+EIG G G +T  L+   A+ ++ +EK
Sbjct: 12  FAPKKSLGQNFLHDAGIAKWIADEIKPDGAPLVVEIGPGQGAMTTHLVGRAAKTLL-LEK 70

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D      LK       + +E+   DA + D    F     +++I NLPY++G  +L + +
Sbjct: 71  DNTLAADLKVKFEGRED-VEVWHGDATRFDLRPLFKFGG-VKVIGNLPYSMGGEILRHVL 128

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              T P        + QKEV +R+ A +    YG LS++     +  +   I P VF P 
Sbjct: 129 ---TPPTPVTEAVFMLQKEVCQRLAADQEDDAYGGLSLVVQHDWEVEIRRIIPPEVFKPR 185

Query: 199 PKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQAG 254
           PKV S ++   P               ++ +  F +RRK L+  L     G ++L+    
Sbjct: 186 PKVDSAIVRLTPRPPGDLPVHDRAVFDRLVRMGFSQRRKQLKNLLPECPGGWDSLMGSLS 245

Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281
               +RAE L++ D+  +T       +
Sbjct: 246 KPLTVRAEELTLWDWVALTRHYEGRHE 272


>gi|94264395|ref|ZP_01288185.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1]
 gi|93455152|gb|EAT05370.1| 16S rRNA dimethylase [delta proteobacterium MLMS-1]
          Length = 304

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 129/277 (46%), Gaps = 16/277 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + ILS +K+ P K  GQNFL+   + ++I E +      TV+E+G G G LT+ L    A
Sbjct: 23  QKILSQHKLAPSKQRGQNFLVQPAVAERIVEVAEIEPTATVVELGVGLGALTRPLAARCA 82

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIRIIANLPYNI 129
            KVI +E D       +    + P  +E+   D L+ D+          I+IIANLPY+I
Sbjct: 83  -KVIGLELDAGIVNYHRQ-CGELPANVELRHQDLLQADYPAMAAEQGGKIKIIANLPYSI 140

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              LLF  +       +   + L+ QKEV +R+ A   S  YG L+ L G       +  
Sbjct: 141 TNPLLFRLLVQRQALDW---VVLMIQKEVADRLVAAVGSKEYGVLTALLGACATVERLLA 197

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL---KKITQEAFGKRRKTLRQSLKRLGG 246
           + P  FFP PKV S VI       P           +++   AF +RRKTL  SL     
Sbjct: 198 VGPGNFFPRPKVDSVVIRLDFRNFPHVPDDAEFGRLRRVVDAAFNQRRKTLLNSLSAGLP 257

Query: 247 E-------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           E         L  A +++ LRAE L+  DF R++  L
Sbjct: 258 ELDRETIAAALAAAELDSGLRAERLTTADFRRLSAKL 294


>gi|149922616|ref|ZP_01911044.1| dimethyladenosine transferase [Plesiocystis pacifica SIR-1]
 gi|149816502|gb|EDM75999.1| dimethyladenosine transferase [Plesiocystis pacifica SIR-1]
          Length = 301

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 17/287 (5%)

Query: 1   MTMNNKS-HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           MT++ ++  S K +L+ + + P+K  GQNFL    +  +IA ++G+  G TV+EIGAG G
Sbjct: 1   MTIDLRAIPSPKQLLARHGLAPRKSWGQNFLHAFEVHLEIAAAAGAGPGSTVVEIGAGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFN 114
            LT  LL  GA +V  IE+D+    +L+      P    + + DA+K D+          
Sbjct: 61  TLTAHLLAAGA-EVDAIERDRDLCAVLRTELGALPG-FRLHEADAVKFDYGAHARALLEA 118

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
                 I+ NLPY +   LLF  +  D     W  +    QKEV +R+ +   +  YG  
Sbjct: 119 GKPRPAIVGNLPYQLTGALLFALLEYDAVTGPWIVMV---QKEVADRLCSPPGNKRYGGA 175

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGK 232
           +   G       +       F P P+V S VI   P   P+      ++   + +  F +
Sbjct: 176 TAALGRVRAIRKVCSAPAGCFLPPPRVDSAVIRLDPRPEPLGEVGDPKAYLHLVRTCFQR 235

Query: 233 RRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNI 275
           RRKTL  +L  +G +      +  AG++  +R E L   +F  +   
Sbjct: 236 RRKTLANALLGVGDKASAQRWIAAAGLDPKIRPERLGPAEFAALQRA 282


>gi|67525711|ref|XP_660917.1| hypothetical protein AN3313.2 [Aspergillus nidulans FGSC A4]
 gi|40744101|gb|EAA63281.1| hypothetical protein AN3313.2 [Aspergillus nidulans FGSC A4]
 gi|259485718|tpe|CBF82976.1| TPA: dimethyladenosine transferase (AFU_orthologue; AFUA_7G04860)
           [Aspergillus nidulans FGSC A4]
          Length = 403

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 9/239 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  I   I + +      TV+E+G GPG LT  +L   A+KV+ +E 
Sbjct: 37  FKFNTDLGQHILKNGAIADNIVDKANVQPSQTVLEVGPGPGILTTRILE-KAKKVVAVEF 95

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +L+I+  D +K D  K          I+N PY I + L+F 
Sbjct: 96  DPRMAAELTKRVQATPMEKKLQIVLGDFIKTDLSKL---PPFQVCISNTPYQISSPLIFK 152

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S    P   +   L+ Q+E   R+ A+     Y RLSV   + +K + +  +  + F 
Sbjct: 153 LLSMPNPP---KMCVLMVQREFALRLLARPGDALYSRLSVNVQFFSKVSHIMKVGRNNFR 209

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P P+V S+V+   P L       +    + +  F ++ KTLR          ++ +  I
Sbjct: 210 PPPQVESSVVRIEPKLGKPEISWDEWDGMLRICFVRKNKTLRAGFMATKIRQMIERNWI 268


>gi|47226710|emb|CAG07869.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 311

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 17/246 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           + +  I+    +GQ+ L +  I+  + E +       V+E+G G GN+T  LL   A+KV
Sbjct: 16  VKNQGIMFNTGIGQHILKNPLIVNSVIEKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKV 74

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +  E D +    L+      P  N+L+I+  D LK D   FF++      +ANLPY + T
Sbjct: 75  VACELDCRLVAELQKRVQCTPMQNKLQILVGDVLKTDLP-FFDVC-----VANLPYQVDT 128

Query: 132 -----RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
                R++F  +      PF+    L+FQ+E   R+ A      Y RLS+ T    +   
Sbjct: 129 FLFRRRIVFKLL---LHRPFFRCAVLMFQREFPMRLVAPPGDKLYCRLSINTQLLARVDH 185

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           +  +  + F P PKV S+V+   P   P P   +    + + AF ++ KTL  + K    
Sbjct: 186 LMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSAAFKSSAV 245

Query: 247 ENLLHQ 252
           E LL +
Sbjct: 246 EQLLEK 251


>gi|91772907|ref|YP_565599.1| dimethyladenosine transferase [Methanococcoides burtonii DSM 6242]
 gi|118600877|sp|Q12XH7|RSMA_METBU RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|91711922|gb|ABE51849.1| dimethyladenosine transferase [Methanococcoides burtonii DSM 6242]
          Length = 270

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/289 (31%), Positives = 139/289 (48%), Gaps = 35/289 (12%)

Query: 10  LKTILSHYKIIPKKYMG----QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           ++ IL  Y I      G    Q+FL+D   L  I + +   +   V+EIG G GNLT+ L
Sbjct: 2   VRKILQKYGIR-----GGCHDQHFLIDERSLDSIVDQAELSEKDVVLEIGGGIGNLTERL 56

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   A KV VIE D     +LKD  S +  +LEII  D LK+D  KF       +++ANL
Sbjct: 57  LE-KAGKVYVIELDPALVHVLKDRFSDN-EKLEIIPGDVLKLDLPKF------NKVVANL 108

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY+I + + F     +     +E   L++Q E  +R+ A+ N+ +Y RLSV T +   A 
Sbjct: 109 PYSISSPITFKLFKHE-----FELGILMYQYEFAQRMVAKANTENYSRLSVNTHYFADAD 163

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           ++  I P  F P P+V S V+  +P  +       +    +    F +RRK LR ++  +
Sbjct: 164 IIMKIPPSAFSPPPEVWSAVVKVVPRPSSFHTEDPQFFLDLVTAVFLQRRKKLRNAI--V 221

Query: 245 GGENLLHQAGIE----------TNLRAENLSIEDFCRITNILTDNQDIA 283
            G +LL+   I+           + RAENL   +   I N +   +  +
Sbjct: 222 KGNHLLNVPNIKQIVAELPEEFMSKRAENLEPHELAEIANFIFKMRSTS 270


>gi|221106688|ref|XP_002161204.1| PREDICTED: similar to transcription factor B1, mitochondrial [Hydra
           magnipapillata]
          Length = 328

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 23/286 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               +  ++  Y +  KK + QNF+LDLN+  KIA  +       VIE+G+GPG+L++ L
Sbjct: 12  PMPRISDLMRLYGLRAKKQLSQNFILDLNVTDKIARKADVF-DCNVIEVGSGPGSLSRSL 70

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF----------EKFFNI 115
           L  G R +  +E D++F P L+ +       + I   D LK D           E   + 
Sbjct: 71  LNAGLRHLYAVEIDKRFLPSLELLQDASDGHMSIYHADILKFDMVKPLKNVISAEWESDD 130

Query: 116 SSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              IR++ NLP+++   L   W+ A       +      +TL+FQKEVG+ + A+  +  
Sbjct: 131 LPNIRLVGNLPFSVSIPLFLQWLEALSTRSGVFSFGRIPMTLVFQKEVGQNMVAEALNYD 190

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RL+++       +   +IS  VF P PKV + ++HFIP   P I      ++++ +  
Sbjct: 191 RSRLAIMAQNYCHVSRAMEISSSVFVPEPKVDAWLMHFIPLKKPAIDAPFNVVEQVVKAI 250

Query: 230 FGKRRKTLRQSLKRLGGEN------LLHQAGIETNLRAENLSIEDF 269
           F KRRK ++  L+RL  EN      LL +  ++TNLR   L + DF
Sbjct: 251 FSKRRKIIKTPLRRLFPENERLADELLDRIKLDTNLRPHQLELHDF 296


>gi|119482754|ref|XP_001261405.1| dimethyladenosine transferase [Neosartorya fischeri NRRL 181]
 gi|119409560|gb|EAW19508.1| dimethyladenosine transferase [Neosartorya fischeri NRRL 181]
          Length = 393

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 9/239 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  I   I + +      TV+E+G G G LT  +L   A+KVI +E 
Sbjct: 33  FKFNTDIGQHILKNPTIADAIVDKANVQPSQTVLEVGPGTGILTTRILE-KAKKVIAVEL 91

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +L++I  D +K D  K          I+N PY I + L+F 
Sbjct: 92  DPRMAAEVTKTVQGTPAEKKLQVILGDFVKTDLSKL---PPFQICISNTPYQISSPLIFK 148

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S    P   ++  L+ Q+E   R+ A+     Y RLSV   + ++ + +  +  + F 
Sbjct: 149 LLSMPNPP---KTCILMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHVMKVGKNNFR 205

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P P+V S+V+   P  +      +    + +  F ++ KTLR          L+ +  I
Sbjct: 206 PPPQVESSVVRIEPKADRPNISWDEWDGMLRICFVRKNKTLRAGFMATKVRALIERNWI 264


>gi|294872243|ref|XP_002766218.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239866886|gb|EEQ98935.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 354

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 11/230 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI E+S      TV+EIG G GNLT  LL L A+KV+ +E D + 
Sbjct: 51  KKFGQHLLKNPGILDKIIEASDIKSTDTVLEIGPGTGNLTMRLLEL-AKKVVALEIDPRM 109

Query: 83  FPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +K  +       L++I+ DALK  F  F         +ANLPY I +   F  ++  
Sbjct: 110 AAEVKKRAQTAGRMNLKVIEGDALKTQFPVF------DVCVANLPYQISSPFTFKLLAHR 163

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P +    ++FQKE GER+ A+    +YGRL++     +K T + ++S   F P P+V
Sbjct: 164 ---PVFRCGVIMFQKEFGERLVARVGEDNYGRLAINCQLFSKVTRVCNVSKGSFNPPPEV 220

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            S ++ F+ H +PI         + + AF ++ KTL  S        +L 
Sbjct: 221 DSMIVKFVLHKDPINVDFPEFDGLLRVAFTRKNKTLHSSFMNKAVVKVLE 270


>gi|325962647|ref|YP_004240553.1| dimethyladenosine transferase [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468734|gb|ADX72419.1| dimethyladenosine transferase [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 290

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 121/279 (43%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ +     I P K +GQNF++D N +++I  ++      TV+E+G        + L
Sbjct: 15  ASDIRRLAEEIGIRPTKTLGQNFVIDGNTIRRIVAAADIGPDETVLEVGP-GLGSLTLGL 73

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A  V+ +E D      L +   +          ++  DA+KV          P  ++
Sbjct: 74  LDAAASVVAVEIDPVLAAKLPETVKEWRPGAAGNFHLVHADAMKVTELPV----QPTALV 129

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + +    + P      ++ Q EV +R+ A   S  YG  SV   W +
Sbjct: 130 ANLPYNVAVPVVLHLL---QYFPSLRHGLVMVQDEVADRLAAGPGSKTYGVPSVKAAWYS 186

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSL 241
           +      I  +VF+P+PK+ S ++ F     P      E +  +   AF +RRKTLR +L
Sbjct: 187 QMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPATTATREQVFAVVDAAFAQRRKTLRAAL 246

Query: 242 KRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNI 275
                     E  L  AG++   R E + I  F +I   
Sbjct: 247 AGWAGGAPEAERCLVAAGVDPTARGEVIDIGAFAKIAEA 285


>gi|213029736|ref|ZP_03344183.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 212

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 7/213 (3%)

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGT 131
           + VIE D+     L+        +L I Q DA+ ++F +    +  P+R+  NLPYNI T
Sbjct: 1   LTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRVFGNLPYNIST 59

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV+  +  +   + ++ 
Sbjct: 60  PLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVP 116

Query: 192 PHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           P  F P PKV S V+  +PH   P P   +  L +IT EAF +RRKT+R SL  L     
Sbjct: 117 PSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSVET 176

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 177 LTEMGIDPAMRAENISVAQYCQMANYLSENAPL 209


>gi|256028569|ref|ZP_05442403.1| dimethyladenosine transferase [Fusobacterium sp. D11]
 gi|289766489|ref|ZP_06525867.1| dimethyladenosine transferase [Fusobacterium sp. D11]
 gi|289718044|gb|EFD82056.1| dimethyladenosine transferase [Fusobacterium sp. D11]
          Length = 264

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 17/270 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +KV  IE
Sbjct: 3   FKHKKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCIE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   S   N   ++  D L+VD +K+ N     +++AN+PY I + ++   
Sbjct: 62  IDKDLENTLRKKFSSKEN-YTLVMGDVLEVDLKKYINQG--TKVVANIPYYITSPIINKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I +       +   ++ QKEVGERI A+      G L++   +  +A  +F I    F P
Sbjct: 119 IESKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEAEYLFTIPREFFNP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            P V S  I    + +         +   K  + AF  +RK +  +L  LG      + +
Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+Q  +  N RAEN+SI+ F  + NI    
Sbjct: 235 LNQIEVSENERAENISIDKFIELINIFESR 264


>gi|260494381|ref|ZP_05814512.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_33]
 gi|260198527|gb|EEW96043.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_33]
          Length = 264

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 126/270 (46%), Gaps = 17/270 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +KV  +E
Sbjct: 3   FKHKKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+    IL+   S   N   ++  D L+VD  ++ N     +++AN+PY I + ++   
Sbjct: 62  IDKDLENILRKKFSLKEN-YTLVMGDVLEVDLRRYLNQG--TKVVANIPYYITSPIINKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         +   ++ QKEVGERI A+      G L++   +  +   +F I    F+P
Sbjct: 119 IENRD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEVEYLFTIPREFFYP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            P V S  I    + +         +   K  + AF  +RK +  +L  LG      + +
Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+Q  +  N RAEN+SI+ F  + NI    
Sbjct: 235 LNQIEVSENERAENISIDKFIELINIFESR 264


>gi|296329439|ref|ZP_06871928.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153448|gb|EFG94278.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 264

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 127/270 (47%), Gaps = 17/270 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +KV  +E
Sbjct: 3   FKHKKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   S   N   ++  D L+VDF+K+ N     +++AN+PY I + ++   
Sbjct: 62  IDKDLENTLRKKFSSKEN-YTLVMGDVLEVDFKKYINQG--TKVVANIPYYITSPIINKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         +   ++ QKEVGERI A+      G L++   +  ++  +F I    F P
Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGESEYLFTIPREFFNP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            P V S  I    + +         +   K  + AF  +RK +  +L  LG      + +
Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+Q  +  N RAEN+SI+ F  + NI    
Sbjct: 235 LNQIEVPENERAENISIDKFIELINIFESR 264


>gi|196010894|ref|XP_002115311.1| hypothetical protein TRIADDRAFT_29342 [Trichoplax adhaerens]
 gi|190582082|gb|EDV22156.1| hypothetical protein TRIADDRAFT_29342 [Trichoplax adhaerens]
          Length = 280

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 116/284 (40%), Gaps = 40/284 (14%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  I+  I E +      TV+EIG G GNLT  LL   A+KVI  E D +    
Sbjct: 2   GQHILKNPLIVNSIVEKAAIRSTDTVLEIGPGTGNLTVKLL-QKAKKVIACEVDPRLAAE 60

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+      P   +L II  D LK +   F         +ANLPY I +  +F  +     
Sbjct: 61  LQKRVQGSPVSTKLHIIVGDVLKTELPYF------DVCVANLPYQISSPFVFKLL---LH 111

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P +    L+FQ+E   R+ A+     Y RLS+ T    K   +  +  + F P PKV S
Sbjct: 112 RPLFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLAKVDHLIKVGKNNFRPPPKVES 171

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETN 258
           +V+   P     P   +    +T+  F ++ +TL  S K  G + +L +       I   
Sbjct: 172 SVVRIEPINPVPPINFKEWDGLTRIVFARKNRTLSASFKTQGVQTMLEKNFRIHCSIHNQ 231

Query: 259 -----------------------LRAENLSIEDFCRITNILTDN 279
                                   RA ++ ++DF  + +    N
Sbjct: 232 AIEEDINIAEKVDTILKSVNANARRARSMDMDDFLELLHAFNSN 275


>gi|238752274|ref|ZP_04613754.1| Dimethyladenosine transferase [Yersinia rohdei ATCC 43380]
 gi|238709542|gb|EEQ01780.1| Dimethyladenosine transferase [Yersinia rohdei ATCC 43380]
          Length = 222

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 8/220 (3%)

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPI 119
           +T+ +       + VIE D+     L     Q  ++L I Q+DA+K++F +       P+
Sbjct: 1   MTEPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKINFSELAEQAGQPL 58

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R+  NLPYNI T L+F+      +      +  + QKEV  R+ A  NS  YGRL+V+  
Sbjct: 59  RVFGNLPYNISTPLMFHLFG---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQ 115

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237
           +      + ++ P  F P+PKV S V+  IPH+  P P   +  L +IT +AF +RRKT+
Sbjct: 116 YYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPNPVGDVRMLSRITTQAFNQRRKTV 175

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 176 RNSLGDLFTAEQLIELGIDPILRAENISVAQYCKLANWLS 215


>gi|238786684|ref|ZP_04630485.1| Dimethyladenosine transferase [Yersinia frederiksenii ATCC 33641]
 gi|238725052|gb|EEQ16691.1| Dimethyladenosine transferase [Yersinia frederiksenii ATCC 33641]
          Length = 222

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 8/220 (3%)

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPI 119
           +T+ +       + VIE D+     L     Q  ++L I Q+DA+KV+F +   +   P+
Sbjct: 1   MTEPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKVNFSELAKLAGQPL 58

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRL+V+  
Sbjct: 59  RVFGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQ 115

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237
           +      + ++ P  F P+PKV S V+  IPH+  P P   +  L +IT +AF +RRKT+
Sbjct: 116 YYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPNPVGDVRMLSRITTQAFNQRRKTV 175

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           R SL  L     L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 176 RNSLGDLFTPEQLIELGIDPILRAENISVAQYCKLANWLS 215


>gi|269792402|ref|YP_003317306.1| dimethyladenosine transferase [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100037|gb|ACZ19024.1| dimethyladenosine transferase [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 267

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 8/254 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL++  I ++I +++       V+EIG G G LT+ +L    + ++ +E D++    
Sbjct: 13  GQNFLINRGIAERIVDAAQISPQDIVLEIGPGKGVLTRQILATPCKALVAVELDRRLEEF 72

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L  I+ Q P RL +I  DAL++D  +      P +++ANLPY+I T +++  +  +  P 
Sbjct: 73  LSPIAQQDP-RLSLIWGDALRLDLSRDIPFH-PTKVVANLPYHITTPIVWKLLE-ELAPL 129

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
               + L+ Q+E   R+           L V        +    + P  F P PKV S+V
Sbjct: 130 GLVRMVLMVQREAAMRMLQGAKGKDRSPLGVTLEAMGWVSKAISVPPGAFRPIPKVNSSV 189

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQAGIETNLR 260
           I      N         +++ + +F +RRK L  + +  G     GE  +   G+  N R
Sbjct: 190 IRIDIDKNRELPTDPRWRRMLKASFSQRRKNLLNNWQAAGIPREEGERRIEALGLMANAR 249

Query: 261 AENLSIEDFCRITN 274
           AE L+++ +  +  
Sbjct: 250 AEELTLDQWLTLAR 263


>gi|226355955|ref|YP_002785695.1| dimethyladenosine transferase [Deinococcus deserti VCD115]
 gi|226317945|gb|ACO45941.1| putative dimethyladenosine transferase [Deinococcus deserti VCD115]
          Length = 292

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 93/276 (33%), Positives = 142/276 (51%), Gaps = 16/276 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               ++ +L+ + + P K +GQNFL+D NIL+ IAE+ G+  G  ++E+G G G LT+ +
Sbjct: 24  SPARVRELLNRHGLRPTKSLGQNFLIDGNILRAIAEAGGAQAGARILEVGPGLGVLTREI 83

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            + GA  V  +EKD++  P L +  +     +E+I  DAL  D+          R+IANL
Sbjct: 84  ASRGAH-VTALEKDERLRPALAETLAGLD--VELIWGDALDFDYASL---PEGTRVIANL 137

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I   LL  ++ A    P   S T+L QKEVG+R+ A+     YG LS L        
Sbjct: 138 PYYITGVLLSRFMHA----PGIVSATVLVQKEVGQRLAARPGEDAYGFLSALAALHGSVR 193

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            + D+    F P+P VTS+VI      +  P    +L K  + A   RRKTLR +L+ +G
Sbjct: 194 HVRDVPKGAFLPAPDVTSSVIRLDFDRSR-PAPEAALLKFVEGALHHRRKTLRNNLRMIG 252

Query: 246 GE-----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
            E       L  AG+  ++RAE++ +     +   L
Sbjct: 253 HEGPAIDAALIAAGLRPDVRAEDVPLSKLEDVARRL 288


>gi|224534733|ref|ZP_03675305.1| dimethyladenosine transferase [Borrelia spielmanii A14S]
 gi|224513981|gb|EEF84303.1| dimethyladenosine transferase [Borrelia spielmanii A14S]
          Length = 274

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 146/284 (51%), Gaps = 20/284 (7%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N   S+K  L   KI P+K  GQN+L++ +I +KI ES        + EIG G G
Sbjct: 1   MNINYNSITSIKQTLKERKIAPRKLWGQNYLINESIRQKIIESLDIKKNEKIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL      +   E D ++  IL +   +  N  ++I+ D  K    +  NI    
Sbjct: 61  AMTDILLK-KTNLLTAFEIDLKYSEILNEKFGKLKN-FKLIKGDFFKKYPTENKNID--- 115

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +    F + + L  QKE+ +RITA+ NS +Y   +VL  
Sbjct: 116 KIFSNLPYNIASKVISKLIEEN----FLKEMVLTVQKELADRITAKINSKNYSSFTVLVQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI  + F+P+PKV ST +  IP  N I    +   K+ +  F  RRK L+ 
Sbjct: 172 SHFTVIKIIDIGENNFYPAPKVKSTTLKLIPKKNNI-KDFKEFNKLIRTVFSNRRKKLKN 230

Query: 240 SL------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           ++      K +  EN L +    ++ R EN+SIE+F +I+N LT
Sbjct: 231 TIINFIANKTILKENFLKEY---SDKRPENISIEEFIQISNTLT 271


>gi|320103121|ref|YP_004178712.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644]
 gi|319750403|gb|ADV62163.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644]
          Length = 325

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 136/297 (45%), Gaps = 27/297 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+T+     I P+K  GQNFL+DLN+   I  +        V+E+G G G LT+ +  LG
Sbjct: 9   LRTLFEREGIAPRKRYGQNFLIDLNLHDVIVAAGEVGPNDVVLEVGPGAGALTRRMADLG 68

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-------------KFFNIS 116
           A  VI +E D     + ++     PN + ++Q DAL                      ++
Sbjct: 69  A-AVIAVEIDPAMARLTRNAVEGRPN-VRVLQRDALANKNRIAPEVLDAVRAGLAVDPVA 126

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
              +++ANLPYN+ T +L N + A+   P  E + +  Q EV ERI A   +  YG LSV
Sbjct: 127 RRFKLVANLPYNVATPILTNLLVAEE--PRVELMAVTIQWEVAERIVATPGTSAYGALSV 184

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTST--VIHFIPHLNPIPCCLESLKKITQEAFGKRR 234
           LT     A ++  + P VF+P P V S   VI   P        +   + + +  F  RR
Sbjct: 185 LTNALASAEIVRKLPPSVFWPRPLVDSAIMVIRPDPARRTRLGDVVWFQSVIRRVFNHRR 244

Query: 235 KTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           K +R+ L             E+LL QA +  + RAE ++++    + + L +    A
Sbjct: 245 KNIRRVLHGYYRDMLTKSDIEDLLSQAELAPDARAETMTVDQLVGLAHRLKERLHAA 301


>gi|240102961|ref|YP_002959270.1| dimethyladenosine transferase [Thermococcus gammatolerans EJ3]
 gi|259494259|sp|C5A594|RSMA_THEGJ RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|239910515|gb|ACS33406.1| Ribosomal RNA adenine methylase transferase (Dimethyladenosine
           transferase) (ksgA) [Thermococcus gammatolerans EJ3]
          Length = 278

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 26/277 (9%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +I+  Y + P + +GQNFL+  +I+++  + +   +  TV+EIG G G LT  L    A 
Sbjct: 7   SIIYKYNLRPNRTLGQNFLIVPDIIERNVKRAELSEKDTVLEIGPGLGVLTDELSK-KAG 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV  IE D +   IL+   S     +E+I+ DA+KV++ +F       ++++NLPY I +
Sbjct: 66  KVYAIEADSRMIEILQREYS--WPNVELIKGDAVKVEWPEF------NKMVSNLPYQISS 117

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            + F  +  +     +E   L++Q E  ER+ A+    +Y RLS++   +    ++  I 
Sbjct: 118 PVTFKLLKHE-----FERAVLIYQLEFAERMIAKPGDRNYSRLSLMVQAKANVELVERIG 172

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245
              F+P PKV S V+   P   P    +E  + + +  F  RR T+  +LK+        
Sbjct: 173 RGAFWPRPKVDSAVVVLEPK--PEKERIELNENLVKALFQHRRSTVASALKKSAHMLGTD 230

Query: 246 ---GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
               ++ L         R   LS E+   I   L DN
Sbjct: 231 KKSIKDYLSSLP-HAEKRVFQLSPEEVLDIEVYLRDN 266


>gi|83025305|gb|ABB95745.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 143/300 (47%), Gaps = 24/300 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L
Sbjct: 1   PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           +  GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +           
Sbjct: 61  IGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120

Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              IR+++NLP+NI        I       + +        L FQKEV ERI AQ    +
Sbjct: 121 VPDIRLVSNLPFNITMPFXVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RLSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    
Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240

Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           F  ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|320583126|gb|EFW97342.1| dimethyladenosine transferase [Pichia angusta DL-1]
          Length = 319

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 16/251 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  I + I + +       V+EIG G GNLT  +L   ARKVI  E 
Sbjct: 24  FKFNTDLGQHILKNPLIAQGIVDKAEIRPSDVVLEIGPGTGNLTVRILE-KARKVIASEV 82

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEII  D +K++   +F++      I+N PY I + ++F 
Sbjct: 83  DPKMAAELTKRVQGTPYEKKLEIIMGDFMKLETLPYFDVC-----ISNTPYQISSGIVFK 137

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S    P       L+FQ+E    +TA+     Y RLS           +  +  + F 
Sbjct: 138 LLSMPRPP---RIAVLMFQREFAMNLTARPGDALYNRLSANAQMWANVKHVMKVGKNNFR 194

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---- 252
           P PKV S+V+   P +            + +  F ++ KTL  + +      +L      
Sbjct: 195 PPPKVESSVVKVEPKIPRPNLDYNEWDGLLRFCFNRKNKTLNATFRNNKILEILENNYKT 254

Query: 253 -AGIETNLRAE 262
              I +  R E
Sbjct: 255 FLSILSEQRGE 265


>gi|163841724|ref|YP_001626129.1| dimethyladenosine transferase [Renibacterium salmoninarum ATCC
           33209]
 gi|162955200|gb|ABY24715.1| dimethyladenosine transferase [Renibacterium salmoninarum ATCC
           33209]
          Length = 297

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +  ++ + +   + P K +GQNF++D N +++I  ++      TV+EIG        + L
Sbjct: 21  AADIRRLAAELDVRPTKTLGQNFVIDGNTIRRIVAAAKIAPSETVLEIGP-GLGSLTLGL 79

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A  V+ +E D +    L    S+         +++  DALKV          P  ++
Sbjct: 80  LDAAAHVVAVEIDAKLAARLPQTISEFRPEKSGAFDVVTADALKVTE----LPQEPTALV 135

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   ++ + +         E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 136 ANLPYNVAVPVVLHLLEYFL---SLEHGLVMVQDEVADRLAAPPGSKTYGVPSVKAAWYA 192

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241
           +      I  +VF+P+PK++S ++ FI    P        +  +   AF +RRKT+R +L
Sbjct: 193 QVRKAGVIGMNVFWPAPKISSGLVEFIRREPPQTRAERREVFAVIDAAFAQRRKTVRAAL 252

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E +L  AG++   R E L I  F RI   
Sbjct: 253 AGWAGSGADAEQILIAAGVDPRARGEVLDIAAFSRIAEA 291


>gi|294899921|ref|XP_002776810.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239884011|gb|EER08626.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 354

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 11/230 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI E+S      TV+EIG G GNLT  LL L A+KV+ +E D + 
Sbjct: 51  KKFGQHLLKNPGILDKIIEASDIKSTDTVLEIGPGTGNLTMRLLEL-AKKVVALEIDPRM 109

Query: 83  FPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +K  +       L++I+ DALK  F  F         +ANLPY I +   F  ++  
Sbjct: 110 AAEVKKRAQTAGRMNLKVIEGDALKTAFPVF------DVCVANLPYQISSPFTFKLLAHR 163

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P +    ++FQKE GER+ A+    +YGRL++     +K T + ++S   F P P+V
Sbjct: 164 ---PVFRCGVIMFQKEFGERLVARVGEENYGRLAINCQLFSKVTRVCNVSKGSFNPPPEV 220

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            S ++ F+ H +PI         + + AF ++ KTL  S        +L 
Sbjct: 221 DSMIVKFVLHKDPINVDFPEFDGLLRIAFTRKNKTLHSSFMNKAVIKVLE 270


>gi|291453553|ref|ZP_06592943.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           albus J1074]
 gi|291356502|gb|EFE83404.1| dimethyladenosine transferase dimethyltransferase [Streptomyces
           albus J1074]
          Length = 287

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++       V+E+G        + L
Sbjct: 11  PSDIRELATALGVRPTKQRGQNFVIDANTVRRIIRTADVRADDVVVEVGP-GLGSLTLGL 69

Query: 67  TLGARKVIVIEKDQQFFPIL-KDISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRII 122
              A+ V  +E D      L   + ++ P R     ++  DAL+V         +P  ++
Sbjct: 70  LETAQHVTAVEIDDTLAAALPATVEARLPARAAHFALVHSDALRVTE---LPGPAPTALV 126

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 127 ANLPYNVAVPVLLHMLE---HFPTIERTLVMVQSEVADRLAAAPGSKVYGVPSVKANWYA 183

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQS 240
           +      I  +VF+P+P V S ++  +    P       E +  +   AF +RRKTLR +
Sbjct: 184 EVKRAGAIGRNVFWPAPNVDSGLVSLVRRDGPPATTATREQVFAVVDAAFAQRRKTLRAA 243

Query: 241 LKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274
           L          E  L  AG+    R E+L++E+F  I  
Sbjct: 244 LSGWAGSAAAAEAALVAAGVSPQARGESLTVEEFAAIAE 282


>gi|83025299|gb|ABB95742.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L
Sbjct: 1   PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           +  GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +           
Sbjct: 61  IGNGARQVLVIEKDARFLNPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120

Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              IR+++NLP+NI    L   I       + +        L FQKEV ERI A+    +
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIARPGDRN 180

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RLSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    
Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240

Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           F  ++KT+R+++  L   +N L +A        I  N  A +L + DF +I     D  D
Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|50364820|ref|YP_053245.1| dimethyladenosine transferase [Mesoplasma florum L1]
 gi|62900520|sp|Q6F2B4|RSMA_MESFL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|50363376|gb|AAT75361.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Mesoplasma florum
           L1]
          Length = 267

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 122/269 (45%), Gaps = 18/269 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK  GQNF+ D N++ KI    G+     +IEIG G G LT+ LL     KV+ IE
Sbjct: 2   KVEAKKKFGQNFISDQNLINKIVSILGNDKDQLIIEIGPGTGALTK-LLAQKYNKVVAIE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-----SPIRIIANLPYNIGTR 132
            D    PILK   +   +  E+   D L VDFEK            + II+N+PY I + 
Sbjct: 61  IDTDMEPILKKEITN--DNFELFLSDVLLVDFEKLIKEKRQHENQKVSIISNMPYYITSE 118

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +LF  ++             + QKEV  R+ + K   +Y  LSV   +       F +  
Sbjct: 119 ILFRTLNVSDK---LTKAVFMMQKEVAIRVCSYKGENNYNNLSVACEFYADKKYEFTVPK 175

Query: 193 HVFFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--- 247
           H+F+P PKV S +I               +      ++ F  RRKT+  +L  +  +   
Sbjct: 176 HMFYPVPKVDSAIISLTFNNKYTEQIKDKDKFLTFLRKIFNNRRKTILNNLSNVTNDKTK 235

Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITN 274
              +L    I+ +LR E + +EDF RI N
Sbjct: 236 ANEILDNLNIDKSLRPEVVGLEDFIRIYN 264


>gi|319950588|ref|ZP_08024496.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Dietzia cinnamea P4]
 gi|319435727|gb|EFV90939.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Dietzia cinnamea P4]
          Length = 244

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 13/245 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ + +   + P K +GQNF+ D N ++KI  +SG     TVIE+G G G+LT  LL   
Sbjct: 1   MRALAAELGVTPTKTLGQNFVHDANTVRKIVTASGVGRDDTVIEVGPGLGSLTLPLLD-A 59

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNR----LEIIQDDALKVDFEKFFNISSPIRIIANL 125
           A +V+ +E D      L    ++   R    L ++  DAL V         SP  ++ANL
Sbjct: 60  AGRVVAVEIDPVLAARLPRTVAERAPRLAELLTVVGADALAVSAADL-GEPSPTALVANL 118

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+   +L + ++     P   +  ++ Q EV +R+ A   S  YG  SV  G+     
Sbjct: 119 PYNVSVPVLLHLLAE---VPTIRTALVMVQLEVADRLAAAPGSRVYGVPSVKAGFFGTVR 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLES---LKKITQEAFGKRRKTLRQSL 241
               +  +VF+P P V S ++    +   P     E    +  +   AF +RRKTLR +L
Sbjct: 176 RTGVVGRNVFWPVPNVESGLVRIDAYPEAPWDLGAEHRRRVFAVVDAAFAQRRKTLRAAL 235

Query: 242 KRLGG 246
               G
Sbjct: 236 SGWAG 240


>gi|156358457|ref|XP_001624535.1| predicted protein [Nematostella vectensis]
 gi|156211322|gb|EDO32435.1| predicted protein [Nematostella vectensis]
          Length = 325

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 141/295 (47%), Gaps = 23/295 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               +  +L  Y +  +K   QNF+LDLNI  KIA+ S       V E+GAGPG+LT+ +
Sbjct: 7   PMPKVSDLLRLYGLTAQKQFSQNFILDLNITDKIAKVSDVF-DCYVCEVGAGPGSLTRSI 65

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP------- 118
           L  GAR V  +E D++F P L+ +      R+ +   D +K +    F  +SP       
Sbjct: 66  LNAGARHVAAVEIDRRFLPSLQLLEDAAKGRMTLHHADIMKFNIPSAFPRASPTGWESGD 125

Query: 119 ---IRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              +R++ NLP+ +   LL  W+ A       +      + L+FQKEV E I A + S +
Sbjct: 126 IPGVRMVGNLPFGVSIPLLLQWLEAIPERSGPFAFGRTPMALVFQKEVAENIVASEGSYN 185

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RL+V+  +  +A   + +   VF P PKV ++++   P + P I      ++++ +  
Sbjct: 186 RSRLAVMVQYLCEAKRRYSLPSSVFVPKPKVDASLVVLTPRVTPLIDAPFIVVEQVVKAV 245

Query: 230 FGKRRKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           F  RRK +   LK +         +LL  + +    RA  L++ +F  + +   +
Sbjct: 246 FAMRRKFIHTPLKLMFPGKEELVGDLLRLSSVNPEQRAHELAMTEFNSLCSAYLE 300


>gi|262066560|ref|ZP_06026172.1| dimethyladenosine transferase [Fusobacterium periodonticum ATCC
           33693]
 gi|291379742|gb|EFE87260.1| dimethyladenosine transferase [Fusobacterium periodonticum ATCC
           33693]
          Length = 264

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 125/269 (46%), Gaps = 17/269 (6%)

Query: 18  KIIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
               KK  GQNFL + + IL KI E S   +   ++EIG G G LT +L+   A+K+  +
Sbjct: 2   DFKHKKKYGQNFLNNKDEILNKIIEVSNIDENDEILEIGPGQGALTNLLVER-AKKLTCV 60

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+     L+   S   N   ++  D L+VD  K+ N     +++AN+PY I + ++  
Sbjct: 61  EIDKDLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKG--TKVVANIPYYITSPIINK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I         +   ++ QKEVGERI A+        L++   +  +A  +F I    F 
Sbjct: 118 LIENKE---LIDEAYIMVQKEVGERICAKAG-KERSILTLAVEYYGEADYLFTIPREFFN 173

Query: 197 PSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GEN 248
           P P V S  I    + +         +   K  + AF  +RK +  +L  LG      + 
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKVSEDLFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKE 233

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           +L+Q  I  N RAEN+SI+ F  + +I  
Sbjct: 234 ILNQVEISENERAENISIDKFIELIDIFE 262


>gi|72389977|ref|XP_845283.1| ribosomal RNA adenine dimethylase family protein, conserved
           [Trypanosoma brucei TREU927]
 gi|62359277|gb|AAX79719.1| ribosomal RNA adenine dimethylase family protein, conserved
           [Trypanosoma brucei]
 gi|70801818|gb|AAZ11724.1| ribosomal RNA adenine dimethylase family protein, conserved
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
          Length = 344

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 13/251 (5%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T  +    LKT  S   ++  K  GQ+ L +  ++  I E +       V+EIG G GNL
Sbjct: 43  TKKSAPTGLKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAVKPTDIVLEIGPGTGNL 102

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPI 119
           T+ LL   A+KVI  E D +    L       P   +L++I+ + L  +F  F       
Sbjct: 103 TEKLL-QAAKKVIAFEVDPRMVAELNKRFQNSPLAPKLQVIRGNCLDHEFPYF------D 155

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           + +AN+PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV + 
Sbjct: 156 KCVANVPYAISSALVFKLLKR----PNFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQ 211

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
              + + +  IS + F P PKV S+VI   P         E    + +  F ++ K +  
Sbjct: 212 LLARCSHLMKISKNSFNPPPKVESSVIRLDPKHPAPSVDFEEWDGLVKHIFNRKNKKVSS 271

Query: 240 SLKRLGGENLL 250
             +       L
Sbjct: 272 IFRTKNTVRTL 282


>gi|321258494|ref|XP_003193968.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Cryptococcus gattii
           WM276]
 gi|317460438|gb|ADV22181.1| rRNA (adenine-N6,N6-)-dimethyltransferase, putative [Cryptococcus
           gattii WM276]
          Length = 324

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 12/231 (5%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ+ L +  + + I + +       V+E+G G GNLT  +L    RKV+ +E D +  
Sbjct: 44  KFGQHILTNPLVAQGIVDKANLKPTDVVLEVGPGTGNLTVRILPAC-RKVVAVEMDPRMA 102

Query: 84  PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             ++      P   +LE+I  D +K D   F        +I+N PY I + L+F  +S  
Sbjct: 103 AEVQKRVLGKPEQKKLELIVGDFVKADLPYF------DVLISNTPYQISSPLVFKLLSQR 156

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P       L+FQ+E   R+ A  N+  +GRL+       +   +  +    F P P+V
Sbjct: 157 PIP---RCAVLMFQREFALRLVATPNTKLWGRLAANVQLYARVEHVMKVGKGNFRPPPQV 213

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S+V+  +P   P P   E    + +  F +  KTLR   K  G   LL +
Sbjct: 214 ESSVVRIMPRDPPPPVKFEEFDGLNRIIFSRANKTLRAGFKAKGVVELLEK 264


>gi|220912054|ref|YP_002487363.1| dimethyladenosine transferase [Arthrobacter chlorophenolicus A6]
 gi|219858932|gb|ACL39274.1| dimethyladenosine transferase [Arthrobacter chlorophenolicus A6]
          Length = 290

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 1   MTMNNK--------SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVI 52
           MT  N         +  ++ +     + P K +GQNF++D N +++I  ++G     TV+
Sbjct: 1   MTEPNPAAPAPLFGASDIRRLAGEIGVRPTKTLGQNFVIDGNTIRRIVAAAGVGADETVL 60

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVD 108
           E+G        + L   A  V+ +E D      L    ++          +++ DA+KV 
Sbjct: 61  EVGP-GLGSLTLGLLDAAAAVVAVEIDPVLAAKLPATVAEWRPAAVGNFHLVEADAMKVT 119

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
                    P  ++ANLPYN+   ++ + +      P  +   ++ Q EV +R+ A   S
Sbjct: 120 DLPV----EPTALVANLPYNVAVPVVLHLLE---HFPSLQHGLVMVQDEVADRLAAGPGS 172

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQ 227
             YG  SV + W  +      I  +VF+P+PK+ S ++ F     P      + +  +  
Sbjct: 173 KTYGVPSVKSAWYGQMRKAGVIGMNVFWPAPKIHSGLVAFTRREPPATSATRQQVFAVID 232

Query: 228 EAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
            AF +RRKTLR +L    G     E  L  AG++   R E + I  F RI   
Sbjct: 233 AAFAQRRKTLRAALSGWAGGGAEAERCLVAAGVDPTARGEVIDIAAFARIAEA 285


>gi|70987085|ref|XP_749024.1| dimethyladenosine transferase [Aspergillus fumigatus Af293]
 gi|66846654|gb|EAL86986.1| dimethyladenosine transferase [Aspergillus fumigatus Af293]
 gi|159123206|gb|EDP48326.1| dimethyladenosine transferase [Aspergillus fumigatus A1163]
          Length = 392

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 9/239 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  I   I + +      TV+E+G G G LT  +L   A+KVI +E 
Sbjct: 32  FKFNTDIGQHILKNPTIADAIVDKANVQPSQTVLEVGPGTGILTTRILE-KAKKVIAVEL 90

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +L++I  D +K D  K          I+N PY I + L+F 
Sbjct: 91  DPRMAAEVTKTVQGTPAEKKLQVILGDFVKTDLSKL---PPFQICISNTPYQISSPLIFK 147

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S    P   ++  L+ Q+E   R+ A+     Y RLSV   + ++ + +  +  + F 
Sbjct: 148 LLSMPNPP---KTCILMVQREFALRLIARPGDSLYSRLSVNAQFFSRISHIMKVGKNNFR 204

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           P P+V S+V+   P  +      +    + +  F ++ KTLR          L+ +  I
Sbjct: 205 PPPQVESSVVRIEPKADRPNISWDEWDGMLRICFVRKNKTLRAGFMATKVRALIERNWI 263


>gi|260889782|ref|ZP_05901045.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254]
 gi|260860388|gb|EEX74888.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254]
          Length = 282

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 13/268 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               KK  GQNFL D N+  +I + +   +   V+EIG G G LT+ L+   ++ +   E
Sbjct: 19  NHKAKKNNGQNFLNDSNLSDEILDVANIDEKTEVLEIGPGLGFLTEKLIE-NSKFLTAFE 77

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D    P L        N  ++I  D ++ D +KFF     ++++AN+PY I + ++   
Sbjct: 78  IDDDLIPFLNKKFENKQN-FKLIHQDFMEADLKKFFEDKKNVKVVANIPYYITSPIINKL 136

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +         + + L+ QKEV ERI +Q +S +   L+    +  +A  +F +    F P
Sbjct: 137 LEYREN---IDEIYLMVQKEVAERIASQPHSKNMSLLTHAVQFYAEAEYLFTVPKEKFDP 193

Query: 198 SPKVTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----L 249
            PKV S  +                E   K  +EAF  +RK++  +L +LG         
Sbjct: 194 VPKVDSAFLGIKILKDKRYESQISEEKYFKYLKEAFSNKRKSIANNLTKLGFSKDVVGTA 253

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           L + G     R E  S+++F     IL 
Sbjct: 254 LEKVGKTRLARTEEFSVQEFIDFIEILE 281


>gi|261328672|emb|CBH11650.1| ribosomal RNA adenine dimethylase family protein,conserved,
           putative [Trypanosoma brucei gambiense DAL972]
          Length = 383

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 13/251 (5%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T  +    LKT  S   ++  K  GQ+ L +  ++  I E +       V+EIG G GNL
Sbjct: 82  TKKSAPTGLKTGGSQSGMVFNKGFGQHILKNPLVIAAIVEKAAVKPTDIVLEIGPGTGNL 141

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPI 119
           T+ LL   A+KVI  E D +    L       P   +L++I+ + L  +F  F       
Sbjct: 142 TEKLL-QAAKKVIAFEVDPRMVAELNKRFQNSPLAPKLQVIRGNCLDHEFPYF------D 194

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           + +AN+PY I + L+F  +      P ++   L+FQ+E   R+ AQ  S  Y RLSV + 
Sbjct: 195 KCVANVPYAISSALVFKLLKR----PNFKCAVLMFQREFALRVCAQPGSEAYCRLSVNSQ 250

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
              + + +  IS + F P PKV S+VI   P         E    + +  F ++ K +  
Sbjct: 251 LLARCSHLMKISKNSFNPPPKVESSVIRLDPKHPAPSVDFEEWDGLVKHIFNRKNKKVSS 310

Query: 240 SLKRLGGENLL 250
             +       L
Sbjct: 311 IFRTKNTVRTL 321


>gi|83025313|gb|ABB95749.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 24/300 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S + +L  Y I  K+ + QNF LD   L KIA ++G L G TV+EIG GPG +T+ L
Sbjct: 1   PLPSTRDLLRLYGIRSKRSLSQNFXLDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           +  GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +           
Sbjct: 61  IGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120

Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              IR+++NLP+NI    L   I       + +        L FQKEV ERI AQ    +
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RLSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    
Sbjct: 181 RSRLSVLCQNYAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240

Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           F  ++KT+R+++  L   +N L +A        I+ N  A +L + DF +I     D  D
Sbjct: 241 FHGKQKTVRKTIGHLFPNQNRLERADILLSTCRIQPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|15639328|ref|NP_218777.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025570|ref|YP_001933342.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum
           SS14]
 gi|27151559|sp|O83357|RSMA_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732635|sp|B2S2T4|RSMA_TREPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|3322613|gb|AAC65323.1| dimethyladenosine transferase (ksgA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018145|gb|ACD70763.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059727|gb|ADD72462.1| dimethyladenosine transferase [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 285

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 19/284 (6%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           N + +L   L+   +   K  GQNFLLD  +  ++ +      G  V EIGAG G +T  
Sbjct: 7   NSARALAQFLTERGLRMHKKWGQNFLLDPVLRTQLVKILAPERGERVWEIGAGIGAMT-A 65

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           LL   +  + V E D+ F   L+ +   H   + +I+ D L+           P  ++ N
Sbjct: 66  LLVQNSDFLTVFEIDRGFVQTLRKLFDAH---VRVIEGDVLQQWHAAAAQE-QPACVLGN 121

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYNI  R + N I +      ++ + +  QKE+G R+TA      Y   SVL  W+ + 
Sbjct: 122 LPYNIAARFIGNTIES---GYIFKRMVVTVQKEIGLRMTALPAQKWYSYFSVLCQWQYEV 178

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            ++ +++P  F+P P V S  +        P          +T+  F  RRKT+R +L  
Sbjct: 179 RVIRNVAPVCFWPRPHVVSQALVLTKRNAVPSCVDPALFLHVTKTLFSARRKTVRNNLLT 238

Query: 244 L----------GGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                        E L  +AGI+   RAE LSI DF  +++ L 
Sbjct: 239 WQKRMPGGAAVCVEELCARAGIDARARAEQLSIYDFITLSDTLR 282


>gi|39939217|ref|NP_950983.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M]
 gi|62900544|sp|Q6YPJ4|RSMA_ONYPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|39722326|dbj|BAD04816.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M]
          Length = 268

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 91/262 (34%), Positives = 138/262 (52%), Gaps = 19/262 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D+N+L KI   +       V+EIG G G LT++++   A+ V+  E D  
Sbjct: 6   KKKYGQNFLTDVNLLNKIVTKASIT-DKNVLEIGPGKGALTKIIVPQ-AKHVLAYEIDAT 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
             P L     ++ N + II DD LK     DF+ +F+ +S + +I NLPY I + +LF  
Sbjct: 64  LKPFLN---FENHNNVNIIYDDFLKRDLLKDFDHYFSPNSQLSLIGNLPYYITSPILFKI 120

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I      P     T++ QKEVG R+ AQ N+ +Y  LSV+  +      + ++  H+FFP
Sbjct: 121 IDT----PQINDATIMIQKEVGMRLLAQPNNKNYNALSVIIQFLFSIEKIQEVKRHMFFP 176

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENL---LH 251
           +PKV S VI    + N  P  L+   K  + +F ++RKTL  +L     L  E +     
Sbjct: 177 APKVDSIVIKLTKNNNICPTFLQQFIKFVKASFKQKRKTLLNNLSCQFLLSKETIIPFFL 236

Query: 252 QAGIETNLRAENLSIEDFCRIT 273
           Q  I   +RAE +++E F ++T
Sbjct: 237 QHHIPLQIRAEQVTLETFQKLT 258


>gi|323453421|gb|EGB09293.1| hypothetical protein AURANDRAFT_13505 [Aureococcus anophagefferens]
          Length = 255

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 123/267 (46%), Gaps = 20/267 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
             PK+ +GQN+L D N   KI +S G     G  V+E+G G G LT++LL     +++ +
Sbjct: 1   FRPKQSLGQNYLSDQNYATKIVDSLGDDSERGRRVVELGPGLGALTRLLLRQYP-EMVAV 59

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLF 135
           E D +   +L+     +P    ++  D L VD+ K        + +I NLPY I +++LF
Sbjct: 60  EIDGRAVELLEQT---YPAPFTVLHSDVLAVDYTKLAAARGGRLSVIGNLPYYITSQILF 116

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
                           +  Q EV  R+ A+  +  YG LSV+     +  + F I    F
Sbjct: 117 CLCDHHA---SVSRAVVTMQHEVALRLVAKPRTKDYGILSVVFQLYAQPKIAFKIPHTAF 173

Query: 196 FPSPKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           +P PKVTS ++          +P     L+ +   AF +RRK LRQSLK      +L+ A
Sbjct: 174 YPQPKVTSALVAIDFPEGGVDLPVDPRKLRTVVTTAFRQRRKMLRQSLKG-----ILNGA 228

Query: 254 GIE---TNLRAENLSIEDFCRITNILT 277
            +       R E L+  +F  +T  + 
Sbjct: 229 TLPDQFATKRPEELAPAEFLDLTGAIY 255


>gi|303232891|ref|ZP_07319575.1| dimethyladenosine transferase [Atopobium vaginae PB189-T1-4]
 gi|302481081|gb|EFL44157.1| dimethyladenosine transferase [Atopobium vaginae PB189-T1-4]
          Length = 351

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 125/289 (43%), Gaps = 19/289 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              + + +L  + +  K  +GQNFL+D  ++ KI   +      +++E+G G G L+  L
Sbjct: 52  NPRATRRVLEQHGLYAKHRLGQNFLVDDAVIGKILALAQPRAHTSLLEVGPGIGTLSLAL 111

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD------FEKFFNISSPI 119
           L     ++I IEKD     +L    + + N + +   DAL+VD      F K  NI  P 
Sbjct: 112 LQQHC-QLIAIEKDDDLLDVLASTCALYENAMHVYHSDALRVDAASLQAFCKARNIPQPA 170

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            ++ANLPY I   L+  +       P  E +T++ Q EV  R+ A+ +   YG  S    
Sbjct: 171 ALVANLPYQIAATLVLQYFEDM---PQLERMTVMVQSEVACRMAAKPHDKLYGAYSAKLA 227

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRK 235
                   F + P  F P+P VTS VI    H      C   L++    +   AF +RRK
Sbjct: 228 LYAAPAGSFVVKPSSFMPAPHVTSQVIALQRHAQADLVCDGELRRRVCVLIDAAFAQRRK 287

Query: 236 TLRQSLKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           TL   L   G         L +  +   +RAE L    F  +   L  +
Sbjct: 288 TLVNCLSAAGIAPDAARACLREMQLAPAIRAEVLCAAQFVELYARLHTH 336


>gi|310779117|ref|YP_003967450.1| dimethyladenosine transferase [Ilyobacter polytropus DSM 2926]
 gi|309748440|gb|ADO83102.1| dimethyladenosine transferase [Ilyobacter polytropus DSM 2926]
          Length = 263

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 126/268 (47%), Gaps = 17/268 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL +   +LK+I E SG  +   ++EIG G G LT++LL   + KV  +E
Sbjct: 3   FKHKKKFGQNFLTNQGEVLKQIMEVSGVEETDVILEIGPGEGALTELLLEASS-KVNCVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+    IL     ++P +  +I  D L VDF+K   I   ++++AN+PY I + ++   
Sbjct: 62  IDRDLEKILIKKFDENP-KFNLIMQDVLTVDFDK--QIGEKVKVVANIPYYITSPIINKL 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I       + + + ++ QKEV ERI A+        L++   +   A  +F I    F P
Sbjct: 119 IENRK---YVDEIYIMVQKEVAERICAKSG-KERSTLTLAVEYFGDAEYLFTIPKEFFQP 174

Query: 198 SPKVTSTVIHFIPHL---NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            PKV S  +                ++  K  + +F  +RK L  ++  LG         
Sbjct: 175 VPKVDSAFMSIKLRKDNSRIEEIPEDTFFKYVKASFSNKRKNLINNISTLGIPKDIVREK 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           L QA I+   RAE LSI++F  +  +  
Sbjct: 235 LEQAEIDGKRRAETLSIDEFMNLIKVFE 262


>gi|183984448|ref|YP_001852739.1| dimethyladenosine transferase KsgA [Mycobacterium marinum M]
 gi|183177774|gb|ACC42884.1| dimethyladenosine transferase KsgA [Mycobacterium marinum M]
          Length = 274

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 19/249 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-- 94
           +K+   SG      V+E+G G G+LT  LL  GA  V  +E D      L    ++H   
Sbjct: 2   RKVVTVSGITRSDQVLEVGPGLGSLTLALLERGA-AVTAVEIDPVLAARLPQTVAEHSDS 60

Query: 95  --NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              RL ++  D L +  +   +   P  ++ANLPYN+    L + ++     P    +T+
Sbjct: 61  EIGRLTVVHHDILTLRRQDVAD--QPTAVVANLPYNVAVPALLHLLAE---FPSIRVVTV 115

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + Q EV ER+ A+     YG  SV  G+  +      +SP VF+P P+V S ++    + 
Sbjct: 116 MVQAEVAERLAAEPGGKEYGVPSVKVGFYGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYE 175

Query: 213 NPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAEN 263
                  E+ ++    +   AF +RRKT R +     G      N L  A I+   R E 
Sbjct: 176 TTPWPTDENFRRQVFELVDIAFAQRRKTSRNAFLEWAGSGNESANRLLAASIDPARRGET 235

Query: 264 LSIEDFCRI 272
           LSIEDF R+
Sbjct: 236 LSIEDFVRL 244


>gi|262037354|ref|ZP_06010819.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264]
 gi|261748611|gb|EEY35985.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264]
          Length = 278

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 16/275 (5%)

Query: 15  SHYKI---IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
             Y     I KK  GQNFL D  +  +I E +       V+EIG G G LT+ L+   ++
Sbjct: 5   KKYGNEKNIAKKKYGQNFLTDGELSDRILEEADIDKNTEVVEIGPGLGFLTEKLIE-KSK 63

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            +   E D    P+L        N L ++  D L+++  ++      I+++AN+PY I +
Sbjct: 64  HLTAFEIDDDLIPVLNKKFKDKDNFL-LVHKDFLEINLGEYLEDRENIKVVANIPYYITS 122

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   I    +      + L+ QKEV ERI+++  S +   L+    +  +   +F + 
Sbjct: 123 PIINRLIE---FRDNISEIYLMVQKEVAERISSKPRSKNMSILTHAVQFFAETEYLFTVP 179

Query: 192 PHVFFPSPKVTST---VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245
              F P PKV S    ++             E   K  ++AF  +RK++  +L  LG   
Sbjct: 180 KEKFDPVPKVDSAFLKIVLLKDKRYESQISEEKYFKYLKKAFSNKRKSISNNLSELGFGK 239

Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                +L + G  +  R E  S+++F     IL +
Sbjct: 240 EKISGVLQKVGKTSLARTEEFSVQEFIDFIKILEN 274


>gi|324516507|gb|ADY46552.1| Dimethyladenosine transferase [Ascaris suum]
          Length = 308

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 125/288 (43%), Gaps = 43/288 (14%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  I+  I E S   +  TV+E+G G GNLT  +L   A+KVI  E D +    
Sbjct: 30  GQHILKNPGIVNAIIEKSAIKNTDTVLEVGPGTGNLTVKILEH-AKKVIACEIDTRMIAE 88

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           LK      P   +LE+   D +KV++  FF++      +ANLPY I +  +F  +     
Sbjct: 89  LKKRVLGTPVQQKLEVRPGDVMKVEWP-FFDVC-----VANLPYQISSPFVFKLLLQRPL 142

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P +     L+FQKE  +R+ A+     Y RLSV      K   +  +    F P PKV S
Sbjct: 143 PRY---AVLMFQKEFADRLLAKPCEKSYCRLSVNVQLLAKVEHLMRVKRTEFRPPPKVDS 199

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--------------------- 242
            V+   P   P P   +    + +  F ++ KTL    K                     
Sbjct: 200 AVVRIEPRNPPPPINFQEWDGLLRIVFLRKSKTLLSIFKQKQVCDLLEKNYRIVCSAKNM 259

Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
                   R   E++L ++G     RA  + IEDF ++  ++ + +D+
Sbjct: 260 PLDKSFKIRNKLEDILTKSGF-ATKRARRMDIEDFLQLL-LVFNKEDV 305


>gi|332297935|ref|YP_004439857.1| Ribosomal RNA small subunit methyltransferase A [Treponema
           brennaborense DSM 12168]
 gi|332181038|gb|AEE16726.1| Ribosomal RNA small subunit methyltransferase A [Treponema
           brennaborense DSM 12168]
          Length = 294

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 15/280 (5%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +   +LK  L    +  +K  GQNFL++ N   ++ ++     G TV E+G G G +T+ 
Sbjct: 14  DSPAALKKFLDENGMAMQKKFGQNFLINGNARVRLIDTLDIGAGSTVWEVGPGLGAMTKE 73

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122
           +L+ GA K+ V E D+ F   +      +       + + D LK  +++      P R  
Sbjct: 74  ILSRGA-KLTVFEIDRGFASFIGKFFEPYARSGAFILREGDVLKT-WKQAAEQGIPDRFF 131

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI   ++ + ISA      ++   +  QKEV ER+ A     +Y   SVL  W  
Sbjct: 132 GNLPYNIAAAIVGDLISAGI---RFDKAVVTVQKEVAERMCAAAGDGNYSSFSVLCNWAY 188

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQS 240
               + D++   F+P P V S  +         PCC       ++ +  F  RRKT++ +
Sbjct: 189 DVQPVMDLAGGNFWPRPNVDSRAVLMTKKAA-FPCCENPGHFMQLQRSLFVSRRKTVKNN 247

Query: 241 LKRLG-----GENLLHQAGIETNLRAENLSIEDFCRITNI 275
           L           ++L  AGI+   RAE L++E   ++++I
Sbjct: 248 LTAFYRNAEKAADVLSAAGIDPQQRAERLTVEQLLQLSDI 287


>gi|296134601|ref|YP_003641843.1| dimethyladenosine transferase [Thiomonas intermedia K12]
 gi|295794723|gb|ADG29513.1| dimethyladenosine transferase [Thiomonas intermedia K12]
          Length = 268

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 123/260 (47%), Gaps = 13/260 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            + +K  GQ+FL+D  I+  I +    L G  ++EIG G G LT  LL    R +  +E 
Sbjct: 16  HVARKRFGQHFLIDQQIIHGIVDCINPLAGERLVEIGPGLGALTLALLQRIPR-LAAVEI 74

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+      +    Q P+++E+I+ DAL  +   F ++ + +R++ NLPYNI T LLF+ +
Sbjct: 75  DRDLAARWRK---QAPDKVELIEADALDFN---FASLGTDLRLVGNLPYNISTPLLFHLM 128

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                         + QKEV +R+ A      +GRLSV+  WR +   + D+ P  F P 
Sbjct: 129 EVAEQ---VRDQHFMLQKEVIDRMVAAPGGRDFGRLSVMLQWRYRMVNLLDVPPEAFDPP 185

Query: 199 PKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P+V S V+   P           + L  +   AF +RRK +R SL         +    +
Sbjct: 186 PQVDSAVVRMTPLPVQELPRLDRKLLSALVTAAFSQRRKLMRHSLGPWLDTQG-YAGDFD 244

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE +S  ++  +   L
Sbjct: 245 LQRRAEEVSTAEYIALAQSL 264


>gi|237744029|ref|ZP_04574510.1| dimethyladenosine transferase [Fusobacterium sp. 7_1]
 gi|229431258|gb|EEO41470.1| dimethyladenosine transferase [Fusobacterium sp. 7_1]
          Length = 264

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 17/270 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +KV  +E
Sbjct: 3   FKHKKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+    IL+   S   N   ++  D L+VD  ++ N     +++AN+PY I + ++   
Sbjct: 62  IDKDLENILRKKFSLKEN-YTLVMGDVLEVDLRRYLNQG--TKVVANIPYYITSPIINKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         +   ++ QKEVGERI A+      G L++   +  +A  +F I    F P
Sbjct: 119 IENRD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEAEYLFTIPREFFNP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            P V S  I    + +         +   K  + AF  +RK +  +L  LG      + +
Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKEI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+Q  +  N RAEN+SI+ F  + NI    
Sbjct: 235 LNQIEVSENERAENISIDKFIELINIFESR 264


>gi|83025309|gb|ABB95747.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 142/300 (47%), Gaps = 24/300 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L
Sbjct: 1   PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           +  GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +           
Sbjct: 61  IGNGARQVVVIEKDDRFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120

Query: 117 -SPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
              IR+++NLP+NI    L   I       + +        L FQKEV ERI AQ    +
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RLSVL     +A + + +      P+  V   V+  +P   P I      L+K+    
Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGXXVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240

Query: 230 FGKRRKTLRQSLKRLGG-ENLLHQAG-------IETNLRAENLSIEDFCRITNILTDNQD 281
           F  ++KT+R+++  L    N L +A        I  N  A +L + DF +I     D  D
Sbjct: 241 FHGKQKTVRKTIGHLFPNXNRLERADILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|19112914|ref|NP_596122.1| 18S rRNA dimethylase [Schizosaccharomyces pombe 972h-]
 gi|26556992|sp|Q9USU2|DIM1_SCHPO RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|6048291|emb|CAB58154.1| 18S rRNA dimethylase [Schizosaccharomyces pombe]
          Length = 307

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 12/235 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQ+ L +  + + I + +      TV+E+G G GNLT  +L   ARKVI +E 
Sbjct: 22  FKFNKDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLE-KARKVIAVEM 80

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +L+++  D +K D   F         ++N PY I + L+F 
Sbjct: 81  DPRMAAEITKRVQGTPKEKKLQVVLGDVIKTDLPYF------DVCVSNTPYQISSPLVFK 134

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +     P    +  L+FQ+E   R+ A+   P Y RLS           +  +  + F 
Sbjct: 135 LLQQRPAP---RAAILMFQREFALRLVARPGDPLYCRLSANVQMWAHVKHIMKVGKNNFR 191

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           P P V S+V+   P   P P   E    + +  F ++ KT+    K      ++ 
Sbjct: 192 PPPLVESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFKTSSIIEMVE 246


>gi|294338548|emb|CAZ86877.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Thiomonas sp.
           3As]
          Length = 268

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 13/260 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            + +K  GQ+FL+D  I++ I +         ++EIG G G LT  LL    R +  +E 
Sbjct: 16  HVARKRFGQHFLIDQQIIQGIVDCINPQADERLVEIGPGLGALTLALLQRIPR-LAAVEI 74

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+         S Q P+++E+I+ DAL  +   F ++ + +R++ NLPYNI T LLF+ +
Sbjct: 75  DRDLAA---RWSKQAPDKVELIEADALDFN---FASLGTDLRLVGNLPYNISTPLLFHLM 128

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                         + QKEV +R+ A      +GRLSV+  WR +   + D+ P  F P 
Sbjct: 129 DVAEQ---VRDQHFMLQKEVIDRMVAAPGGRDFGRLSVMLQWRYRMVNLLDVPPEAFDPP 185

Query: 199 PKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV S V+   P           + L  +   AF +RRK +R SL         +    +
Sbjct: 186 PKVNSAVVRMTPLPVQELPRLDRKLLSALVTAAFSQRRKLMRHSLGPWLDTQG-YAGDFD 244

Query: 257 TNLRAENLSIEDFCRITNIL 276
              RAE +S  ++  +   L
Sbjct: 245 LQRRAEEVSTAEYIALAQSL 264


>gi|331229364|ref|XP_003327348.1| dimethyladenosine transferase dimethyltransferase [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309306338|gb|EFP82929.1| dimethyladenosine transferase dimethyltransferase [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 341

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 15/235 (6%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQ+ L +  + + I + +       V+E+G G GNLT  +L    + + V+E D +  
Sbjct: 50  KLGQHILKNPLVAQTIVDKANLKTTDKVLEVGPGTGNLTVKILEKNCKSLTVVEMDPRMA 109

Query: 84  PILKDISSQHPN-----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
             L        +     +LEII  D LK +   F         I+N PY I + L+F  +
Sbjct: 110 FELSKRFQNAKDLNFKRKLEIIVGDFLKTELPYF------DVCISNTPYQISSPLVFKLL 163

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P +    L+FQKE G R++A+  S  + RLSV     +K T + ++    F P 
Sbjct: 164 EHR---PLFRVAILMFQKEFGLRLSARPGSKLWSRLSVNVQLYSKVTHLMNVGKANFRPP 220

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS-LKRLGGENLLHQ 252
           P V S V+   P   P          +T+  F +R KT+R S        N+L  
Sbjct: 221 PLVESCVVKIEPLNPPPNIAFNEFDGLTRICFNRRNKTVRASFFASNSTLNMLEA 275


>gi|238782671|ref|ZP_04626701.1| Dimethyladenosine transferase [Yersinia bercovieri ATCC 43970]
 gi|238716331|gb|EEQ08313.1| Dimethyladenosine transferase [Yersinia bercovieri ATCC 43970]
          Length = 214

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 78/210 (37%), Positives = 116/210 (55%), Gaps = 7/210 (3%)

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNI 129
            ++ VIE D+     L     Q  ++L I Q DA+KV+F +   +   P+R+  NLPYNI
Sbjct: 2   DRMTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFAELAELAGQPLRVFGNLPYNI 60

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+  S          +  + QKEV  R+ A  NS  YGRL+V+  +      + +
Sbjct: 61  STPLMFHLFSYTNA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLE 117

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P+PKV S V+  IPH+N P P   +  L +IT +AF +RRKT+R SL  L   
Sbjct: 118 VPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITTQAFNQRRKTVRNSLGDLFTA 177

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             L + GI+  LRAEN+S+  +C++ N L+
Sbjct: 178 EQLIELGIDPILRAENISVAQYCKLANWLS 207


>gi|237739754|ref|ZP_04570235.1| dimethyladenosine transferase [Fusobacterium sp. 2_1_31]
 gi|229423362|gb|EEO38409.1| dimethyladenosine transferase [Fusobacterium sp. 2_1_31]
          Length = 264

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 125/269 (46%), Gaps = 17/269 (6%)

Query: 18  KIIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
               KK  GQNFL + + IL KI E S   +   ++EIG G G LT +L+   A+K+  +
Sbjct: 2   DFKHKKKYGQNFLNNKDEILNKIIEVSNIDENDEILEIGPGQGALTNLLVER-AKKLTCV 60

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+     L+   S   N   ++  D L+VD  K+ N     +++AN+PY I + ++  
Sbjct: 61  EIDKDLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKG--TKVVANIPYYITSPIINK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I         +   ++ QKEVGERI A+        L++   +  +A  +F I    F 
Sbjct: 118 LIENKE---LIDEAYIMVQKEVGERICAKAG-KERSILTLAVEYYGEADYLFTIPREFFN 173

Query: 197 PSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GEN 248
           P P V S  I    + +         +   K  + AF  +RK +  +L  LG      + 
Sbjct: 174 PVPNVDSAFISIKFYKDDRYKNKISEDLFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKE 233

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           +L++  I  N RAEN+SI+ F  + +I  
Sbjct: 234 ILNRVEISENERAENISIDKFIELIDIFE 262


>gi|58259713|ref|XP_567269.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Cryptococcus neoformans
           var. neoformans JEC21]
 gi|134116780|ref|XP_773062.1| hypothetical protein CNBJ3380 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255682|gb|EAL18415.1| hypothetical protein CNBJ3380 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229319|gb|AAW45752.1| rRNA (adenine-N6,N6-)-dimethyltransferase, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 325

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 12/231 (5%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ+ L +  + + I + +       V+E+G G GNLT  +L    RKV+ +E D +  
Sbjct: 45  KFGQHILTNPLVAQGIVDKANLKPTDVVLEVGPGTGNLTVRILPAC-RKVVAVEMDPRMA 103

Query: 84  PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             ++      P   +LE+I  D +K D   F        +I+N PY I + L+F  +S  
Sbjct: 104 AEVQKRVLGKPEQKKLELIVGDFVKADLPYF------DVLISNTPYQISSPLVFKLLSQR 157

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P       L+FQ+E   R+ A  N+  +GRL+       +   +  +    F P P+V
Sbjct: 158 PIP---RCAVLMFQREFALRLVATPNTKLWGRLAANVQLYARVEHVMKVGKGNFRPPPQV 214

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S+V+  +P   P P   E    + +  F +  KTLR   K  G   LL +
Sbjct: 215 ESSVVRIMPRDPPPPVKFEEFDGLNRIIFSRANKTLRAGFKAKGVVELLEK 265


>gi|170762429|ref|YP_001752686.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920250|ref|ZP_02931616.1| dimethyladenosine transferase [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|183508664|ref|ZP_02958159.1| dimethyladenosine transferase [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701740|ref|ZP_02971428.1| dimethyladenosine transferase [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|27151612|sp|Q9PPN8|RSMA_UREPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028824|sp|B1AJP2|RSMA_UREP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|168828006|gb|ACA33268.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902651|gb|EDT48940.1| dimethyladenosine transferase [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|182676132|gb|EDT88037.1| dimethyladenosine transferase [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701010|gb|EDU19292.1| dimethyladenosine transferase [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 277

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 135/277 (48%), Gaps = 17/277 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K  L     +P K MGQNFLL  NI  KI + +       ++EIG G G +T++L+   
Sbjct: 6   IKNKLKQESFVPSKKMGQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEILV-QK 64

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS------SPIRIIA 123
              +I IE D++ +  LK       +   II +D L VD +              I+++A
Sbjct: 65  TNILIAIELDKRLYAHLKTYIKT--SNFHIINNDVLCVDLDNLILDYNNTQKIQKIKVVA 122

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I ++++   I +           ++ QKE+ ERI A+ N+  Y   +VL     K
Sbjct: 123 NLPYAISSKIVLKIIQSK----LINDAYIMVQKEMAERIGAKVNTRGYNAFTVLVQLFCK 178

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             ++F+++   F P PKV S VIH     N +   +E L K  +  F  +RK L+ +L  
Sbjct: 179 TKILFEVNAKEFHPQPKVQSAVIHLENLHNSVNFNIEELGKFLRICFLNKRKKLKNNLSN 238

Query: 244 LGGENLLHQAGI----ETNLRAENLSIEDFCRITNIL 276
           +    +++Q  I    + NLRAEN+  + F ++ N L
Sbjct: 239 IYDIKIINQMFIDYNLDMNLRAENIEPKMFLKLFNYL 275


>gi|315050182|ref|XP_003174465.1| dimethyladenosine transferase dimethyltransferase [Arthroderma
           gypseum CBS 118893]
 gi|311339780|gb|EFQ98982.1| dimethyladenosine transferase dimethyltransferase [Arthroderma
           gypseum CBS 118893]
          Length = 377

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 12/233 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT  +H        +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A
Sbjct: 25  KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83

Query: 71  RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI +E D +    L       P   RLE++  D +K +   F         I+N PY 
Sbjct: 84  KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTEVPYF------DVCISNTPYQ 137

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L F  ++    P       L+FQ+E   R+ A+     Y RLSV      K   + 
Sbjct: 138 ISSPLTFKLLATTPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 194

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            +  + F P P V S+V+  +P +       E    + + AF ++ KTLR S 
Sbjct: 195 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYEEWDGLLRIAFVRKNKTLRSSF 247


>gi|291280249|ref|YP_003497084.1| dimethyladenosine transferase [Deferribacter desulfuricans SSM1]
 gi|290754951|dbj|BAI81328.1| dimethyladenosine transferase [Deferribacter desulfuricans SSM1]
          Length = 269

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 15/273 (5%)

Query: 13  ILSHYKIIP---KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++  YK      KK +GQ+FL + + + +I       +   V+EIG G G LT  +L  G
Sbjct: 4   LIKAYKSEFNKTKKSLGQHFLTNKHFISEIVSFLDLKEHDNVVEIGPGCGVLTYEILQKG 63

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
              + V++ D      L        N L+II  D +++  +   +    ++   NLPYN+
Sbjct: 64  VN-LTVVDIDSDVCDFLSRYLYYFKN-LKIINKDFIEITRDDLPD--GKLKFAGNLPYNV 119

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
             ++    +    +    E +T +FQKEV +R+T++  S  Y  LS+   +      + +
Sbjct: 120 SVKIFEKCVD---FIDDIELMTFMFQKEVADRLTSEPCSKTYSSLSIFAQYYFNIEKIRN 176

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           IS   F+P+ KVTSTV+ FIP           +         F  +RKTL+ +L  L  +
Sbjct: 177 ISGANFWPNTKVTSTVLKFIPRERYFNDLNKEKRFFDFVMSCFKSKRKTLKNNLSYL-SK 235

Query: 248 NLLHQAGIE--TNLRAENLSIEDFCRITNILTD 278
             L +        +RAE LS++DF ++  ++ +
Sbjct: 236 EQLEKIDKHFGEKIRAEQLSLDDFIKLFEMIEN 268


>gi|118619728|ref|YP_908060.1| dimethyladenosine transferase [Mycobacterium ulcerans Agy99]
 gi|118571838|gb|ABL06589.1| dimethyladenosine transferase KsgA [Mycobacterium ulcerans Agy99]
          Length = 274

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 19/249 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-- 94
           +K+   SG+     V+E+G G G+LT  LL  GA  V  +E D      L    ++H   
Sbjct: 2   RKVVAVSGTTRSDQVLEVGPGLGSLTLALLERGA-AVTAVEIDPVLAARLPQTVAEHSDS 60

Query: 95  --NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              RL ++  D L +  +   +   P  ++ANLPYN+    L + ++     P    +T+
Sbjct: 61  EIGRLTVVHHDILTLRRQDVAD--QPTAVVANLPYNVAVPALLHLLAE---FPSIRVVTV 115

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + Q EV ER+ A+     YG  SV  G+  +      +SP VF+P P+V S ++    H 
Sbjct: 116 MVQAEVAERLAAEPGGKEYGVPSVKVGFYGRVRRCGMVSPTVFWPIPRVYSGLVRIDRHE 175

Query: 213 NPIPCCLESLKK----ITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAEN 263
                  E+ ++    +   AF +RRKT R +     G      N L  A I+   R E 
Sbjct: 176 TTPWPTDENFRRQVFELVDIAFAQRRKTSRNAFLEWAGSGNESANRLLAASIDPARRGET 235

Query: 264 LSIEDFCRI 272
           LSIEDF R+
Sbjct: 236 LSIEDFVRL 244


>gi|71013449|ref|XP_758591.1| hypothetical protein UM02444.1 [Ustilago maydis 521]
 gi|46098249|gb|EAK83482.1| hypothetical protein UM02444.1 [Ustilago maydis 521]
          Length = 334

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 98/220 (44%), Gaps = 12/220 (5%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+K  V+E D +  
Sbjct: 54  KFGQHILKNPLVAQGIVDKANLKPTDMVLEVGPGTGNLTVRILE-KAKKTTVVEMDPRMA 112

Query: 84  PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L       P   +L+I+  D  K D   F         I+N PY I + L+F  +S  
Sbjct: 113 AELSKRVQGKPEQRKLDIMLGDFCKTDLPYF------DVCISNTPYQISSPLVFKLLSHR 166

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P +    L+FQ+E   R+ A+     + RLS      +K   +  +S + F P P+V
Sbjct: 167 ---PLFRCAILMFQREFALRLIARPGDNLWCRLSANVQLYSKVDHIMKVSRNSFRPPPQV 223

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            S+V+   P   P     E    +T+  F +R KT+R S 
Sbjct: 224 ESSVVRITPLNPPPAIPFEEFDGLTRIVFSRRNKTVRASF 263


>gi|294495698|ref|YP_003542191.1| dimethyladenosine transferase [Methanohalophilus mahii DSM 5219]
 gi|292666697|gb|ADE36546.1| dimethyladenosine transferase [Methanohalophilus mahii DSM 5219]
          Length = 229

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 15/233 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +IL  Y I     + Q+FL++  IL  IAE++       V+EIG G GNLT+ L++  A 
Sbjct: 4   SILKKYGIRG-GSLDQHFLVNEPILDSIAEAADLQIDDVVLEIGGGIGNLTERLVSR-AG 61

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +VIVIE+D +   +L+D      N ++II+ DA+KV+   F       +++ANLPY+I +
Sbjct: 62  RVIVIERDSRLVAVLQDRFHNVSN-IDIIEGDAMKVELPTF------NKVVANLPYSISS 114

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            + F  ++       +E   L++Q E   R+     S +YGRLSV T +     ++  IS
Sbjct: 115 PITFRLLNHG-----FEKGILMYQYEFARRMVEAPGSKNYGRLSVDTQYFADVRLLRKIS 169

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKR 243
           P  F P+PKV S V+  +P          +   ++ + AFG+RRK ++ +L +
Sbjct: 170 PSAFTPAPKVWSAVVEVVPRPPAFEVKNEQLFFRVVEAAFGQRRKKMKNALTK 222


>gi|294783118|ref|ZP_06748442.1| dimethyladenosine transferase [Fusobacterium sp. 1_1_41FAA]
 gi|294479996|gb|EFG27773.1| dimethyladenosine transferase [Fusobacterium sp. 1_1_41FAA]
          Length = 264

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 125/269 (46%), Gaps = 17/269 (6%)

Query: 18  KIIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
               KK  GQNFL + + IL +I E S   +   ++EIG G G LT +L+   A+K+  +
Sbjct: 2   DFKHKKKYGQNFLNNKDEILNQIIEVSNIDENDEILEIGPGQGALTNLLVER-AKKLTCV 60

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+     L+   S   N   ++  D L+VD  K+ N     +++AN+PY I + ++  
Sbjct: 61  EIDKDLEAGLRKKFSSKEN-YTLVMGDVLEVDLTKYLNKG--TKVVANIPYYITSPIINK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I         +   ++ QKEVGERI A+        L++   +  +A  +F I    F 
Sbjct: 118 LIENKE---LIDEAYIMVQKEVGERICAKAG-KERSILTLAVEYYGEADYLFTIPREFFN 173

Query: 197 PSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GEN 248
           P P V S  I    + +         +   K  + AF  +RK +  +L  LG      + 
Sbjct: 174 PVPNVDSAFISIKFYKDDRYKNKISEDLFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKE 233

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
           +L+Q  I  N RAEN+SI+ F  + +I  
Sbjct: 234 ILNQVEISENERAENISIDKFIELIDIFE 262


>gi|50551823|ref|XP_503386.1| YALI0E00770p [Yarrowia lipolytica]
 gi|52782774|sp|Q6C7H6|DIM1_YARLI RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49649255|emb|CAG78965.1| YALI0E00770p [Yarrowia lipolytica]
          Length = 317

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 97/230 (42%), Gaps = 12/230 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + + I + S      TV+E+G G GNLT  +L   ARKVI +E D +   
Sbjct: 34  LGQHILKNPLVAQGIVDKSDIKPSDTVLEVGPGTGNLTVRILE-KARKVIAVEMDPRMAA 92

Query: 85  ILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L       P   +LEI+  D +K +   F         I+N PY I + L+F  ++   
Sbjct: 93  ELTKRVQGKPEQKKLEIMLGDCIKTELPYF------DVCISNTPYQISSPLVFKLLNQPR 146

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ E   R+ A+     Y RLSV      K + +  +    F P P V 
Sbjct: 147 PP---RVSVLMFQHEFAMRLLARPGDSLYCRLSVNVQMWAKVSHVMKVGRGNFRPPPNVE 203

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           S+V+         P        + +  F ++ KT+    K      +L +
Sbjct: 204 SSVVKIEVKNPRPPIDFNEWDGLLRVCFVRKNKTINAGFKTSAVLAVLEK 253


>gi|66475300|ref|XP_627466.1| Dim1p-like ERMB/KSGA methylase [Cryptosporidium parvum Iowa II]
 gi|32398681|emb|CAD98641.1| dimethyladenosine transferase, probable [Cryptosporidium parvum]
 gi|46228931|gb|EAK89780.1| Dim1p-like ERMB/KSGA methylase [Cryptosporidium parvum Iowa II]
 gi|323508725|dbj|BAJ77256.1| cgd6_930 [Cryptosporidium parvum]
 gi|323509991|dbj|BAJ77888.1| cgd6_930 [Cryptosporidium parvum]
          Length = 385

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 11/230 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI  ++      TV+EIG G GNLT  LL L ARKV+  + D + 
Sbjct: 60  KKKGQHLLKNTGILDKIILAADIKPTDTVLEIGPGTGNLTMRLLPL-ARKVVAFDIDPRM 118

Query: 83  FPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +K  S     N LE+ + DAL+  F  F          ANLPY I +  +F  +S  
Sbjct: 119 VAEVKKRSVNSGFNNLEVREGDALRSSFGDF------DVCTANLPYQISSPFVFKLLSLQ 172

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +    L+FQ+E   R+ A+    HY RLSV T   +K T +  ++P  F P PKV
Sbjct: 173 NK---YRCAVLMFQEEFALRLLAEPGEKHYCRLSVNTKLFSKVTRVCKVAPGSFNPPPKV 229

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            S V+ F P   P+         + +  F +++KT+R +       N+L 
Sbjct: 230 NSMVVKFEPKKIPVSVNFREWDGLMRICFSRKKKTIRANFNNSSVLNILE 279


>gi|328866316|gb|EGG14701.1| dimethyladenosine transferase [Dictyostelium fasciculatum]
          Length = 319

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 123/299 (41%), Gaps = 41/299 (13%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           T+    +    K  GQ+ L +  I+  I E +      TV+EIG G GNLT  LL    +
Sbjct: 26  TVARTREFQMNKAYGQHLLKNPLIIDAIVEKAQLKSTDTVLEIGPGTGNLTMKLLESC-K 84

Query: 72  KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           KVI +E D +    L    S   + + L+II  D LK D   F         +AN+PY I
Sbjct: 85  KVIAVEVDPRMAAELHKRVSTTPYASHLQIILGDFLKADLPYF------DVCVANVPYQI 138

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + L F  ++     P + S  L+FQ E   R+ A+     Y RLSV T    K T + +
Sbjct: 139 SSPLTFKLLAHR---PVFRSAVLMFQLEFAARLAARPGDSLYCRLSVNTQLLGKVTKLMN 195

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +  + F P PKV S V+   P   P P        + +  F ++ KT+    K      +
Sbjct: 196 VGKNNFLPPPKVESAVVRIQPFNPPPPINFVEWDGLVKLCFSRKNKTIAAIFKTNSVIEM 255

Query: 250 LHQ-----------AGIET------------------NLRAENLSIEDFCRITNILTDN 279
           L+Q           A I T                  + R+  L I +F R+ N   +N
Sbjct: 256 LYQNYKTVCSLKGIADIGTEEDMKAKVVAILETNKFNDQRSSKLDINEFLRLLNCFHEN 314


>gi|187918451|ref|YP_001884014.1| dimethyladenosine transferase [Borrelia hermsii DAH]
 gi|119861299|gb|AAX17094.1| dimethyladenosine transferase [Borrelia hermsii DAH]
          Length = 278

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 148/284 (52%), Gaps = 14/284 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N  +S+K +L    I P+K  GQN+L++ +I +K+ ++    +   + EIG G G
Sbjct: 1   MNINYNSINSIKRMLESKNIAPRKIWGQNYLINEHIREKLVDALEIKENERIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL   A  + V E D ++  IL +   Q  N  ++I+ D LK   ++  NI+   
Sbjct: 61  AMTIILLK-KANFLTVFEIDPKYSEILNEQFGQLKN-FKLIKGDFLKTYKQEGQNIN--- 115

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I  +        +    QKE+ +R+ A++ + +Y   +VL  
Sbjct: 116 KIFSNLPYNIASKVISMLIEDE----ILTHMVFTVQKELADRMLAKEGNKNYSSFTVLVQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI    F+P PKV ST +  IP    I    ++  K+ +  F  RRK L+ 
Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTLKLIPCKKEI-KNFKAFNKLVRTVFTSRRKKLKN 230

Query: 240 SLKR-LGGENLLHQAGIE--TNLRAENLSIEDFCRITNILTDNQ 280
           ++   +  +N+L++  ++   + R E +S+++F  I+N LT N 
Sbjct: 231 TIINFIADDNILNEDFLKNFLDKRPEEISVKEFIAISNKLTTNH 274


>gi|171920785|ref|ZP_02931975.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|185178813|ref|ZP_02964605.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024415|ref|ZP_02997074.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518431|ref|ZP_03003922.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188524212|ref|ZP_03004272.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195867442|ref|ZP_03079446.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273367|ref|ZP_03205903.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554601|ref|YP_002285056.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225550876|ref|ZP_03771825.1| conserved domain protein [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225551296|ref|ZP_03772242.1| conserved domain protein [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|226732636|sp|B5ZCB6|RSMA_UREU1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|171903544|gb|EDT49833.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|184209443|gb|EDU06486.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018700|gb|EDU56740.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998093|gb|EDU67190.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660052|gb|EDX53432.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660918|gb|EDX54171.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249887|gb|EDY74667.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209542102|gb|ACI60331.1| dimethyladenosine transferase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225379111|gb|EEH01476.1| conserved domain protein [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|225380030|gb|EEH02392.1| conserved domain protein [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 281

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 133/282 (47%), Gaps = 17/282 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +K  L     +P K MGQNFLL   I  KI   +       ++EIG G G +T+ LL   
Sbjct: 6   IKNKLKQESFVPSKKMGQNFLLSNEIKNKIVNVANISKDDLILEIGPGWGAITE-LLVQK 64

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF------NISSPIRIIA 123
              ++ IE D++ +  LK           II +D L VD +K          +  I+++A
Sbjct: 65  TDTLVAIELDKRLYAHLKTYIKA--PNFHIINNDVLCVDLDKLILDYTNTKKNQKIKVVA 122

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I ++++   I +           ++ QKE+ ERI A+ N+  Y   +VL     K
Sbjct: 123 NLPYAISSKIVLKIIQSK----LINDAYIMVQKEMAERIGAKVNTRGYNAFTVLVQLFCK 178

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             ++F ++   F P PKV S VIH     N +   +E + K  +  F  +RK L+ +L  
Sbjct: 179 TKILFQVNAKEFHPQPKVQSAVIHLENLHNKVDFDIEQVSKFLRICFLNKRKKLKNNLSN 238

Query: 244 LGGENLLHQAGI----ETNLRAENLSIEDFCRITNILTDNQD 281
           +    L+++  I    + NLRAEN+  + F  + N L  + +
Sbjct: 239 IYDIKLVNEMFIDYNLDMNLRAENIEPKMFLELFNYLNKSNN 280


>gi|224541089|ref|ZP_03681628.1| hypothetical protein CATMIT_00240 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526013|gb|EEF95118.1| hypothetical protein CATMIT_00240 [Catenibacterium mitsuokai DSM
           15897]
          Length = 272

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 136/278 (48%), Gaps = 19/278 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M    K  + + IL+ + + P K  GQNFL+D  I++ IA+ +       VIEIG G G 
Sbjct: 1   MENIAKKSNTEFILNTFNLKPSKKYGQNFLVDPGIIQSIADHASLDKETAVIEIGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF---FNISS 117
           LT+ L +  A KV+  E D++   +L      H N +EII  D +K D E+         
Sbjct: 61  LTEQL-SNKAGKVLCFEIDERLKEVLSFSLEGHDN-VEIIFQDFMKADLEEACKKLKNYK 118

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            I ++ NLPY I ++++   +S+ T       L  + QKEV  ++ +++ SP    L ++
Sbjct: 119 DICVVTNLPYYITSKIITKIVSSSTP---INRLVAMVQKEVALKLCSEEKSP----LKMM 171

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             +        ++  HVF P+P V S VI             + L  + + ++  +RKTL
Sbjct: 172 IDYVGDVQYELNVPRHVFMPAPHVDSAVISIHKER----VISQELIDLIEASYTAKRKTL 227

Query: 238 RQSLKRLG---GENLLHQAGIETNLRAENLSIEDFCRI 272
             +LK L     + LL   GI  N RAE L+I+D+ RI
Sbjct: 228 YNNLKSLYHDQTKELLESCGIPANKRAEELNIDDYIRI 265


>gi|330813911|ref|YP_004358150.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487006|gb|AEA81411.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 258

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 91/262 (34%), Positives = 152/262 (58%), Gaps = 8/262 (3%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQNFL +  I+ +I  S+       V E+G G G L++ ++ +  +K + +E D+
Sbjct: 1   MKKKFGQNFLNNQTIIDQIITSANITKDSIVYEVGPGDGALSREIVKINPKKYLAVEIDK 60

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L D+ ++  +   II +DAL+ D    F  S  + II+NLPYNI  +LL  WI+ 
Sbjct: 61  GLIQKLDDVFAKKEHW--IINEDALQFDETSVF--SKNVTIISNLPYNISLKLLLKWINQ 116

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P+++ + L+FQKEVGERI +++NS  YGR+S++     + + + DI+ + FFP PK
Sbjct: 117 YITNPWFDQMILMFQKEVGERILSEENSKKYGRISLIVSAFFQCSKILDINKNDFFPVPK 176

Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-- 256
           V S +I F+P    I     +  L+ +++  F  RRK L+  +K+L  E ++ +  ++  
Sbjct: 177 VDSVMIKFVPLKKTIINNKNIHKLELLSKTLFANRRKKLKNKIKQLFDERVIEENKLDQY 236

Query: 257 TNLRAENLSIEDFCRITNILTD 278
            +LRAEN+S E+F ++T +L D
Sbjct: 237 FDLRAENISKENFYQLTKLLKD 258


>gi|332376340|gb|AEE63310.1| unknown [Dendroctonus ponderosae]
          Length = 306

 Score =  218 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 17/277 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   +   ++   I   K  GQ+ L +  ++  + E S      TV+EIG G GN+T  L
Sbjct: 8   KKSRVHQEVAKQGITFNKQFGQHILKNPMVITSMVEKSAIRSTDTVLEIGPGTGNMTVRL 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+KV+  E D +    L+         ++LEI+  D LK +   FFNI      +A
Sbjct: 68  LE-KAKKVVACEIDTRLVAELQKRVQGTHLQSKLEILVGDVLKRELP-FFNIC-----VA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PY I + L+F  +      PF+    ++FQ+E  +R+ A+     Y RLSV T    +
Sbjct: 121 NIPYQISSPLVFKLL---LHRPFFRCAVIMFQREFAQRLVAKPGDKLYCRLSVNTQLLAR 177

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             M+  +  + F P PKV S+V+   P   P P        +T+ AF ++ +TL  + K+
Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRIEPRNPPPPIPYIEWDGLTRIAFTRKNRTLGSAFKQ 237

Query: 244 LGGENLLHQA-GIETNLRAENLSIEDF---CRITNIL 276
                 L +   +  +L  EN+  EDF    ++  IL
Sbjct: 238 SAVLAALDKNYKLHCSLHNENV-PEDFNLKAKLEEIL 273


>gi|229819472|ref|YP_002880998.1| dimethyladenosine transferase [Beutenbergia cavernae DSM 12333]
 gi|229565385|gb|ACQ79236.1| dimethyladenosine transferase [Beutenbergia cavernae DSM 12333]
          Length = 324

 Score =  218 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 130/279 (46%), Gaps = 18/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   I P K +GQNF+ D   +++I  ++G   G  V+E+G G G+LT  LL
Sbjct: 31  PSDVRALAAGLGIRPTKTLGQNFVTDAGTVRRIVRAAGVTAGDVVVEVGPGLGSLTLGLL 90

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V+ +E D      L    ++H     +RL +I  DAL V          P  ++
Sbjct: 91  EAGA-TVVAVEIDPVLAGALPGTIAEHAPDVADRLTVITADALDVTE----LPGRPSAMV 145

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L   +      P    + ++ Q EV +R+ A   S  YG  SV   W  
Sbjct: 146 ANLPYNVAVPVLLTMLER---FPELARVLVMVQAEVADRLVAPPGSRTYGVPSVKAAWYA 202

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSL 241
            A     I   VF+P P V S ++       P P  L   +      AF +RRKTLR +L
Sbjct: 203 AAARAGSIGRTVFWPVPNVDSALVRLERRPAPAPEDLRAEVFGCVDAAFAQRRKTLRAAL 262

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
               G     E++L  AG++  LR E L +E F R+ ++
Sbjct: 263 AGWAGSPSDAESILRAAGVDPTLRGERLDVEAFARVASV 301


>gi|302820073|ref|XP_002991705.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii]
 gi|300140554|gb|EFJ07276.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii]
          Length = 344

 Score =  218 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 122/282 (43%), Gaps = 20/282 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
             L      PK+++GQN++++ NI  +I  ++    G  V+EIG G G LT  LL  GA 
Sbjct: 54  EALKSKNRRPKRWLGQNYMVNSNINDEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAY 113

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV--------DFEKFFNISSPIRIIA 123
            VI +EKD     ++ +    +P    + QDD LK           E   + S  +++++
Sbjct: 114 -VIAVEKDPDMVSLVSERFKDNPRVKVLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVS 172

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE-VGERITAQKNSPHYGRLSVLTGWRT 182
           NLP+NI T ++   +        + ++ LL Q E     I        Y  +S+   + +
Sbjct: 173 NLPFNITTDVVKKLL---PMGDLFSNVVLLLQDEAAARFIDDSPKGDEYRPISIFIRFFS 229

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQ 239
           +    F +    FFP P V   V+ F    +   P    ++    +   AF  +RK LR 
Sbjct: 230 EMEYKFKVDRLNFFPPPPVNGAVVSFSLKDSSQYPEVKSVKRFFTLVNSAFTGKRKMLRT 289

Query: 240 SLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SL+ L      EN L   G+    R   LS   F ++ N L 
Sbjct: 290 SLRHLYSSSEVENALCSIGVIETARPHQLSFSQFVKLHNTLA 331


>gi|296813149|ref|XP_002846912.1| dimethyladenosine transferase dimethyltransferase [Arthroderma otae
           CBS 113480]
 gi|238842168|gb|EEQ31830.1| dimethyladenosine transferase dimethyltransferase [Arthroderma otae
           CBS 113480]
          Length = 376

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 12/233 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT  +H        +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A
Sbjct: 25  KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83

Query: 71  RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI +E D +    L       P   RLE++  D +K +   F         I+N PY 
Sbjct: 84  KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTEVPYF------DVCISNTPYQ 137

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L F  ++    P       L+FQ+E   R+ A+     Y RLSV      K   + 
Sbjct: 138 ISSPLTFKLLATTPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 194

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            +  + F P P V S+V+  +P +       E    + + AF ++ KTLR S 
Sbjct: 195 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYEEWDGLLRIAFVRKNKTLRSSF 247


>gi|203284494|ref|YP_002222234.1| dimethyladenosine transferase [Borrelia duttonii Ly]
 gi|201083937|gb|ACH93528.1| dimethyladenosine transferase [Borrelia duttonii Ly]
          Length = 274

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 81/281 (28%), Positives = 142/281 (50%), Gaps = 14/281 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N  +S+K +L +  I P+K  GQN+L++ NI +KI ++        + EIG G G
Sbjct: 1   MNINYNSINSIKNVLKNKNIAPRKIWGQNYLINENIREKIIDALDIKKNEKIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T  LL   A  +   E D ++  IL +   Q  N  ++I+ D LK   ++  +I+   
Sbjct: 61  AMTATLL-NKANFLTAFEIDPKYSEILNEKFGQLKN-FKLIEGDFLKTYKQEKTSIN--- 115

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I++NLPYNI ++++   I  +        +    QKE+ +R+ A++ + +Y   ++L  
Sbjct: 116 KIVSNLPYNIASKVISTLIEDE----ILTHMVFTVQKELADRMIAKEGNKNYSSFTILVQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI    F+P PKV ST I   P    I    +   K+ +  F  RRK L+ 
Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTIKLTPCKGNI-KNFQIFNKLIRTVFTSRRKKLKN 230

Query: 240 SLKR-LGGENLLHQAGIE--TNLRAENLSIEDFCRITNILT 277
           ++   +  EN+L +  ++   + R E +S+++F  I N LT
Sbjct: 231 TIINFIKNENILKEDFLKNFLDKRPEEISVKEFITIANKLT 271


>gi|302534918|ref|ZP_07287260.1| LOW QUALITY PROTEIN: dimethyladenosine transferase [Streptomyces
           sp. C]
 gi|302443813|gb|EFL15629.1| LOW QUALITY PROTEIN: dimethyladenosine transferase [Streptomyces
           sp. C]
          Length = 285

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 18/269 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ + +   + P K  GQNF++D N +++I  ++       V+E+G G G+LT  LL
Sbjct: 22  PADIRELAAVLGVRPTKQKGQNFVIDANTVRRIVRTADVRPDDVVVEVGPGLGSLTLALL 81

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A +V  +E D      L    +       +R  ++  DA+ V         +P  ++
Sbjct: 82  E-AADRVTAVEIDDILAAALPATIEARMPHKKDRFALVHSDAMLVTE---LPGPAPTALV 137

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L   +      P  E   ++ Q EV +R+ A+  +  YG  SV   W  
Sbjct: 138 ANLPYNVAVPVLLTMLDR---FPSIERTLVMVQSEVADRLAARPGNKVYGVPSVKAAWYA 194

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLR-- 238
                  I  +VF+P+P V S ++  +    P+        +  +   AF +RRK LR  
Sbjct: 195 DVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPVKTTASKAEVFAVVDAAFAQRRKGLRAA 254

Query: 239 ---QSLKRLGGENLLHQAGIETNLRAENL 264
               +      E  L  AG+    R E+L
Sbjct: 255 LAGWAGSAAAAEQALVAAGVSPLARGESL 283


>gi|326479389|gb|EGE03399.1| dimethyladenosine transferase dimethyltransferase [Trichophyton
           equinum CBS 127.97]
          Length = 378

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 12/233 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT  +H        +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A
Sbjct: 25  KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83

Query: 71  RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI +E D +    L       P   RLE++  D +K +   F         I+N PY 
Sbjct: 84  KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTEVPYF------DVCISNTPYQ 137

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L F  ++ +  P       L+FQ+E   R+ A+     Y RLSV      K   + 
Sbjct: 138 ISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 194

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            +  + F P P V S+V+  +P +       +    + + AF ++ KTLR S 
Sbjct: 195 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247


>gi|15679326|ref|NP_276443.1| dimethyladenosine transferase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|27151554|sp|O27381|RSMA_METTH RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|2622432|gb|AAB85804.1| dimethyladenosine transferase [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 273

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+      + +L  Y +  ++ +GQN+L+D    ++I E +   +   V+EIG G G LT
Sbjct: 1   MSGLYTETREVLRKYGVRLRRSLGQNYLIDEVKRQRILEYADLREDDRVLEIGPGIGTLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             +  L A  V  IE D     IL D      + +++I  DAL+VDF +F       +++
Sbjct: 61  LPMAEL-AGHVTAIESDPLIAAILMDRLQV--DNVDVIVGDALRVDFPEF------NKVV 111

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           +NLPY I + + F  +  D     +E   L++QKE   R+ A+  +  Y RLSV+  +  
Sbjct: 112 SNLPYQISSPITFRLLEHD-----FELAVLMYQKEFARRMVAEPGTREYSRLSVMVHFLA 166

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR----KTLR 238
           +  ++  + P  FFP P+V S V+   P     P     L+ + +  F  R+    K+LR
Sbjct: 167 EVEIVDYLKPGCFFPRPRVESAVVTLKPTGFRAPA---FLEDVCRALFQHRKKKTSKSLR 223

Query: 239 QSLKRLGGENLLHQA--GIETNL---RAENLSIEDFCRITNILTD 278
           +S   +  +   ++   G+   +   R   L  ED   I   + D
Sbjct: 224 ESFHEIRTDLSFNEVLRGLPPEILEKRVFQLRPEDILEIAEHIED 268


>gi|326471294|gb|EGD95303.1| dimethyladenosine transferase dimethyltransferase [Trichophyton
           tonsurans CBS 112818]
          Length = 378

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 12/233 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT  +H        +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A
Sbjct: 25  KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83

Query: 71  RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI +E D +    L       P   RLE++  D +K +   F         I+N PY 
Sbjct: 84  KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTEVPYF------DVCISNTPYQ 137

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L F  ++ +  P       L+FQ+E   R+ A+     Y RLSV      K   + 
Sbjct: 138 ISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 194

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            +  + F P P V S+V+  +P +       +    + + AF ++ KTLR S 
Sbjct: 195 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247


>gi|167957599|ref|ZP_02544673.1| dimethyladenosine transferase [candidate division TM7 single-cell
           isolate TM7c]
          Length = 260

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 133/269 (49%), Gaps = 23/269 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK++GQ++L D  IL  IA+ +      T++EIG G G LT +LL+  A++VI IE D  
Sbjct: 5   KKHLGQHWLRDRFILNHIADCADINKNDTIVEIGPGLGTLTSILLSR-AKEVISIEFDAD 63

Query: 82  FFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                + +  Q P + L +I  D L+ D +   N+    +++ANLPY I  +++  + ++
Sbjct: 64  LA---RKLPGQFPGKDLTVINQDILEFDTD---NLPKKYKLVANLPYYITAKVIHKFTTS 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              P     + LL QKEV ER+ AQ        LSV +      ++   +    F P PK
Sbjct: 118 KNRPS---KMVLLVQKEVAERVVAQPG--RMSLLSVSSQLYANVSLGDVVPACYFTPPPK 172

Query: 201 VTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK------RLGGENLLH 251
           V S V+      P L P     + L +I +  F  RRK LR SL       +   E LL 
Sbjct: 173 VDSQVLIFDMIDPKL-PSDISEKELFRIVKAGFSSRRKKLRSSLSGGLNINKNSVETLLM 231

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDNQ 280
           Q GI  + RAE+LS+ED+  I     + +
Sbjct: 232 QTGISPDHRAEDLSVEDWKVIAKNFYNCK 260


>gi|219115097|ref|XP_002178344.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410079|gb|EEC50009.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 322

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 12/235 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P   +GQ+FL +  ++  I + +G      V+EIG G GN+T  +L   A+KV+ +E 
Sbjct: 37  ISPNTSLGQHFLKNPAVISSIIDKAGLKATDVVLEIGPGTGNMTVPMLQR-AKKVVALEF 95

Query: 79  DQQFF-PILKDISS-QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +LK        ++L++IQ DA+K  +  F        +IANLPY I ++++F 
Sbjct: 96  DSRMVREVLKRTEGTDLAHKLQVIQGDAMKTAWPFF------DCMIANLPYQISSQVVFK 149

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S     P +    L+FQ+E   R++A+     Y RLSV T    K   +  +    F 
Sbjct: 150 LLSHR---PMFRCAVLMFQEEFALRLSARPGEALYCRLSVNTQLLAKVDQLLKVGKQNFR 206

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           P PKV S V+       P P        + +  F ++ KTLR  L       LL 
Sbjct: 207 PPPKVESRVVRIELKNPPPPVNFTEWDGMIRLLFNRKNKTLRSVLNTKSVMKLLE 261


>gi|240047162|ref|YP_002960550.1| dimethyladenosine transferase [Mycoplasma conjunctivae HRC/581]
 gi|239984734|emb|CAT04708.1| Dimethyladenosine transferase [Mycoplasma conjunctivae]
          Length = 260

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 123/266 (46%), Gaps = 14/266 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K + KK  GQNFL D NI+KKI  S    +   VIEIG G G LTQ ++   +  +   E
Sbjct: 3   KFVFKKKYGQNFLKDENIVKKIVNSVDITNKE-VIEIGPGGGALTQEIVKKCS-FLRAYE 60

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D      LK   S  P  +EII +D L  + + F   S+   ++ANLPY I + ++F  
Sbjct: 61  IDADLIENLKKKFSSSP--VEIINEDFLDTNLDFF---STKQIVLANLPYYITSNIIFKI 115

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +S       +  + ++ Q EV +RI A+ N+  Y +LS+   +      +  I P  F P
Sbjct: 116 LS---HINKFSEIVIMVQDEVADRIVAKVNTKDYSKLSLSCQYIANVEKILKIPPSAFIP 172

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA---- 253
            P V S V+ F    N       +     +++F  +RKTL  +       + + Q     
Sbjct: 173 QPSVNSAVVVFRVKENIDQEKFNNFLNFVKKSFAMKRKTLFNNFLTFIERDKIKQIYSLF 232

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
            ++ N+R + +S++ +  I   L   
Sbjct: 233 KLDFNVRPQQISLDLYNEIFEFLYQK 258


>gi|319789994|ref|YP_004151627.1| dimethyladenosine transferase [Thermovibrio ammonificans HB-1]
 gi|317114496|gb|ADU96986.1| dimethyladenosine transferase [Thermovibrio ammonificans HB-1]
          Length = 250

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 116/261 (44%), Gaps = 15/261 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQ+FL D N++++IA++        V+EIG G G LT+ LL    + +  IE 
Sbjct: 1   MRLKKRYGQHFLKDRNVIRRIADALPITSDDVVVEIGPGGGALTEELLARNPKALYAIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D  +   LK+      +R+ +   DA   DF +       ++   NLPYN+ T ++ N +
Sbjct: 61  DPDWVDYLKERFK---DRITVFNADATTFDFSQL---GRGLKFFGNLPYNVSTAIIRNLL 114

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +  +    +     + QKEV  R+TA      +G L  L         +FD+ P  F P 
Sbjct: 115 NHRSA---FSGGVFMVQKEVAGRLTA-TGGKEFGYLPALLQRFFTVKPLFDVPPGAFKPP 170

Query: 199 PKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PKV STV+   P   P     E    +   + AF  RRK L++++   G   L       
Sbjct: 171 PKVWSTVVKLEPK-EPELSDEELLPFENFLKMAFSHRRKKLKKNIPVKG--ELPPHLQPL 227

Query: 257 TNLRAENLSIEDFCRITNILT 277
              RAE L+ E    +   L 
Sbjct: 228 LEKRAEELTGEQLLELFRALK 248


>gi|256810093|ref|YP_003127462.1| dimethyladenosine transferase [Methanocaldococcus fervens AG86]
 gi|256793293|gb|ACV23962.1| dimethyladenosine transferase [Methanocaldococcus fervens AG86]
          Length = 268

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 129/273 (47%), Gaps = 25/273 (9%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             PKK +GQ FL+D N + K  E++       V+EIG G G LT+ L    A+KV +IE 
Sbjct: 2   FKPKKKLGQCFLIDKNFVNKAVEAANLTKDDVVLEIGLGKGILTEELAK-NAKKVYIIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   P    +  ++ N +EII  DA+KVD           +++ANLPY I + + F  +
Sbjct: 61  DKNLEPYANRLKEKY-NNIEIIWGDAVKVDLSNL----DFNKVVANLPYQISSPITFKLL 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   ++   L++Q E  +R+ A++ +  YGRLSV    R    ++  + P+ F P 
Sbjct: 116 KKG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIIAKVPPNAFSPK 170

Query: 199 PKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSL---------KRLGGEN 248
           PKV S ++   P+ N       +      +  F  R K++R++L          +   + 
Sbjct: 171 PKVFSAIVKIKPNKNKYHIENEDFFDNFLRAIFQHRNKSVRRALIDSSKELNYSKNEMKK 230

Query: 249 LLHQAGIE----TNLRAENLSIEDFCRITNILT 277
           +L +   E     N +   LS+ +  +++N L 
Sbjct: 231 ILEEFSKEHENLMNEKVFKLSVGEIVKLSNELY 263


>gi|321479018|gb|EFX89974.1| hypothetical protein DAPPUDRAFT_205158 [Daphnia pulex]
          Length = 308

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 19/272 (6%)

Query: 6   KSHSLKTILSH--YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           K    K + S     +     +GQ+ L +  I++ + E +      TV+EIG G GN+T 
Sbjct: 8   KKSGRKEVSSKEVQGLRFNTSLGQHILKNPKIVESMVEKAALRSTDTVLEIGPGTGNMTV 67

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
            LL   +++V+  E D +    L+     +    +L I+  D LK +   FF++      
Sbjct: 68  KLLER-SKRVVACEVDPRMVAELQKRVLGTHLQPKLHIMVGDVLKTELP-FFDVC----- 120

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I +  +F  +      P +    L+FQ+E  ER+ A+     Y RLSV T   
Sbjct: 121 VANLPYQISSPFVFKLL---LHRPMFRCALLMFQREFAERLIAKPGDKLYCRLSVNTQLL 177

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            K   +  +  + F P PKV S+V+   P     P        + +  F ++ +T+    
Sbjct: 178 AKVDHVLKVGKNNFRPPPKVESSVVRIEPKNPAPPINFREWDGLVRIGFLRKNQTMSALF 237

Query: 242 KRLGGENLLHQ-----AGIETNLRAENLSIED 268
           K      +L +     A +   +  EN S++D
Sbjct: 238 KHTSVVTVLEKNYRTHASLHNIVIPENFSLKD 269


>gi|302818711|ref|XP_002991028.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii]
 gi|300141122|gb|EFJ07836.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii]
          Length = 344

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 121/282 (42%), Gaps = 20/282 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
             L      PK+++GQN++++ NI  +I  ++    G  V+EIG G G LT  LL  GA 
Sbjct: 54  EALKSKNRRPKRWLGQNYMVNSNINDEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAY 113

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV--------DFEKFFNISSPIRIIA 123
            VI +EKD     ++ +    +P    + QDD LK           E   + S  +++++
Sbjct: 114 -VIAVEKDPDMVSLVSERFKDNPRVKVLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVS 172

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE-VGERITAQKNSPHYGRLSVLTGWRT 182
           NLP+NI T ++   +        + ++ LL Q E     I        Y  +S+   + +
Sbjct: 173 NLPFNITTDVVKKLL---PMGDLFSNVVLLLQDEAAARFIDDSPKGDEYRPISIFIRFFS 229

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQ 239
           +    F +    FFP P V   V+ F    +   P    ++    +   AF  +RK LR 
Sbjct: 230 EMEYKFKVDRLNFFPPPPVNGAVVSFSLKDSSQYPEVKSVKRFFTLVNSAFTGKRKMLRT 289

Query: 240 SLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           SL+ L      EN L   G+    R   LS   F  + N L 
Sbjct: 290 SLRHLYSSSEVENALCSIGVVETARPHQLSFSQFVNLHNTLA 331


>gi|34762816|ref|ZP_00143802.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887518|gb|EAA24602.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 264

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 127/270 (47%), Gaps = 17/270 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL + + IL +I E S   +   ++EIG G G LT +L+    +KV  +E
Sbjct: 3   FKHKKKYGQNFLNNKDEILNRIIEVSNINENDEILEIGPGQGALTSLLVER-VKKVTCVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   S   N + +I  D L+VD  K+ N S   +++AN+PY I + ++   
Sbjct: 62  IDKDLENTLRKKFSSKENYI-LIMGDILEVDLRKYINKS--TKVVANIPYYITSPIINKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         +   ++ QKEVGERI A+      G L++   +  +A  +F I    F P
Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEAEYLFTIPREFFNP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
           +P V S  I    + +             K  + AF  +RK +  +L  LG      + +
Sbjct: 175 TPNVDSAFISIKFYKDDRYKNKISESLFFKYVKAAFSNKRKNIVNNLVTLGYSKNKIKEI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+Q  +  N RAEN+SI+ F  + NI    
Sbjct: 235 LNQIEVPENERAENISIDKFIELINIFESR 264


>gi|124486386|ref|YP_001031002.1| dimethyladenosine transferase [Methanocorpusculum labreanum Z]
 gi|124363927|gb|ABN07735.1| dimethyladenosine transferase [Methanocorpusculum labreanum Z]
          Length = 258

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 127/263 (48%), Gaps = 24/263 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D + +  IA+S     G TV+E+G G G LT  LL  GA  V  +E D    P L
Sbjct: 7   QHFLIDTDAVDFIADSIPIQ-GRTVLEVGPGGGVLTAALLERGAN-VRAVELDGTLLPNL 64

Query: 87  KDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +    +     +L I + DA +V    +        +IANLPY+I +++ F  +      
Sbjct: 65  EQRFEEELSTGQLTITRGDASRVPLPAY------DLVIANLPYSISSKITFRLLETG--- 115

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             +E+  L++Q E  +R+ +      YGRLSV+        ++  + P  F P P+V S 
Sbjct: 116 --FETAVLMYQWEFAKRMVSPPGDGEYGRLSVMVQTYADVELILKLPPQAFNPPPEVDSA 173

Query: 205 VIHFIPHLNPIPCCLESLKKI-TQEAFGKRRKTLRQSL---KRLGGENLLHQA-GIETN- 258
           V+  IPH  P+      +  +  +E F  RRKT++  L   K + GE ++ +  G   N 
Sbjct: 174 VVKIIPHEPPVKILNRDVHAVLVRELFSHRRKTIQNGLKGMKSIYGEEVMTKLIGSLPND 233

Query: 259 ---LRAENLSIEDFCRITNILTD 278
               R E LSI DF  + N LT+
Sbjct: 234 LLGKRPEMLSIVDFIELANRLTN 256


>gi|260818308|ref|XP_002604325.1| hypothetical protein BRAFLDRAFT_125270 [Branchiostoma floridae]
 gi|229289651|gb|EEN60336.1| hypothetical protein BRAFLDRAFT_125270 [Branchiostoma floridae]
          Length = 1177

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 14/219 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I+  Y++   K + QNFL D N+  KI +S+G+L+G  V E+G GPG +T+ +L  
Sbjct: 25  TIRDIVKLYRLNAAKQLSQNFLFDTNLTDKIVKSAGNLEGAYVCEVGPGPGGITRSILKA 84

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPI 119
           GA KV+V+E D++F   L+ +S+  P R+EI+  D L  +  K                +
Sbjct: 85  GAAKVVVVELDKRFNAGLRLLSAAAPGRVEIVNADILTYNLAKALPLDLAVPWEGDPPNV 144

Query: 120 RIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
            II NLP+N+ T L+  W+ A       +      LTL FQKEV ERI A   S    RL
Sbjct: 145 HIIGNLPFNVSTPLIIRWLEALALRTGPFVYGRTQLTLTFQKEVCERICAPPRSSQRSRL 204

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213
           S+++ +  +    F I    F P P V   V+HF P   
Sbjct: 205 SIMSQYLCRVKHCFRIPGKCFVPKPDVDVGVVHFTPLDR 243


>gi|327303040|ref|XP_003236212.1| dimethyladenosine transferase dimethyltransferase [Trichophyton
           rubrum CBS 118892]
 gi|326461554|gb|EGD87007.1| dimethyladenosine transferase dimethyltransferase [Trichophyton
           rubrum CBS 118892]
          Length = 377

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 12/233 (5%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT  +H        +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A
Sbjct: 25  KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83

Query: 71  RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI +E D +    L       P   RLE++  D +K +   F         I+N PY 
Sbjct: 84  KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTEVPYF------DVCISNTPYQ 137

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L F  ++ +  P       L+FQ+E   R+ A+     Y RLSV      K   + 
Sbjct: 138 ISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 194

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            +  + F P P V S+V+  +P +       +    + + AF ++ KTLR S 
Sbjct: 195 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 247


>gi|4572637|emb|CAA92585.1| dimethylase [Schizosaccharomyces pombe]
          Length = 315

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 12/235 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQ+ L +  + + I + +      TV+E+G G GNLT  +L   ARKVI +E 
Sbjct: 22  FKFNKDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLE-KARKVIAVEM 80

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +L+++  D +K D   F         ++N PY I + L+F 
Sbjct: 81  DPRMAAEITKRVQGTPKEKKLQVVLGDVIKTDLPYF------DVCVSNTPYQISSPLVFK 134

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +     P       L+FQ+E   R+ A+   P Y RL            +  +  + F 
Sbjct: 135 LLQQRPAP---RGAILMFQREFALRLVARPGDPLYCRLPANVQMWAHVKHIMKVGKNNFR 191

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           P P V S+V+   P   P P   E    + +  F ++ KT+    K      ++ 
Sbjct: 192 PPPLVESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFKTSSIIEMVE 246


>gi|294784979|ref|ZP_06750267.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_27]
 gi|294486693|gb|EFG34055.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_27]
          Length = 264

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 124/270 (45%), Gaps = 17/270 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL + + IL +I E S   D   ++EIG G G LT +L+    +KV  +E
Sbjct: 3   FKHKKKYGQNFLNNKDEILNRIIEVSNINDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   S   N   +I  D L++D  ++ N     +++AN+PY I + ++   
Sbjct: 62  IDKDLENTLRKKFSSKEN-YTLIMGDVLEIDLRRYINQG--TKVVANIPYYITSPIINKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         +   ++ QKEVGERI A+      G L++   +  +A  +F I    F P
Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEAEYLFTIPREFFNP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            P V S  I    + +             K  + AF  +RK +  +L  LG      + +
Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISESLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+Q  +  N RAEN+SI+ F  + NI    
Sbjct: 235 LNQIEVPENERAENISIDKFIELINIFESR 264


>gi|227494872|ref|ZP_03925188.1| possible dimethyladenosine transferase [Actinomyces coleocanis DSM
           15436]
 gi|226831324|gb|EEH63707.1| possible dimethyladenosine transferase [Actinomyces coleocanis DSM
           15436]
          Length = 310

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 139/306 (45%), Gaps = 32/306 (10%)

Query: 1   MTMNNKSHS--LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           MT  N      ++ I +   I P K +GQNF+ D   ++KI  +     G  V+EIG G 
Sbjct: 4   MTEVNLLTPVNVREICAALNIQPTKTLGQNFVHDGGTVRKIIAAGRVTAGEHVLEIGPGL 63

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKVDFEKFFNI 115
           G+LT  LL  G R V  +E D      L    +   +    L ++  D L+V  +   N 
Sbjct: 64  GSLTLGLLEAGCR-VTAVEIDPVLATALPSTVAGQGSADLPLRVLLKDGLQVRSDAELNE 122

Query: 116 SS-----------PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           +            P R++ANLPYN+   L+ N++      P  + + ++ Q EV +R++A
Sbjct: 123 APLINGEIVEWEAPTRLVANLPYNVAVPLVLNFLE---HFPSIQEILVMVQTEVAQRLSA 179

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-------PIPC 217
                 YG  SV   W   A M   IS  +F+P P V S+++    +             
Sbjct: 180 TPGGRIYGVPSVKAAWYGHAEMAGTISRQIFWPVPNVDSSLVRITRYAAGEGPELGEPAV 239

Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272
             E++ K+   AF +RRKTLR +LK   G     E LL +AGI++  R E L I +F  +
Sbjct: 240 SKEAVFKLVDAAFAQRRKTLRAALKNWAGNATLAEELLAKAGIDSVRRGETLDINEFVAL 299

Query: 273 TNILTD 278
               T+
Sbjct: 300 GRAATE 305


>gi|85057928|ref|YP_456844.1| dimethyladenosine transferase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|122064281|sp|Q2NIH8|RSMA_AYWBP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|84790033|gb|ABC65765.1| dimethyladenosine transferase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 268

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 91/262 (34%), Positives = 139/262 (53%), Gaps = 19/262 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D+N+L KI   +       V+EIG G G LT++++   A+ V+  E D  
Sbjct: 6   KKKYGQNFLTDVNLLNKIVTKASIT-DKNVLEIGPGKGALTKIIVPQ-AKNVLAYEIDAT 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
             P L     ++ N + II DD LK     DF+ +F+ +S + +I NLPY I + +LF  
Sbjct: 64  LKPFLN---FENHNNVNIIYDDFLKRDLLKDFDHYFSPNSQLSLIGNLPYYITSPILFKI 120

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I      P     T++ QKEVG R+ AQ N+ +Y  LSV+  +      + ++  H+FFP
Sbjct: 121 IDT----PQINDATIMIQKEVGMRLLAQPNNKNYNALSVIIQFLFSIEKIQEVKRHMFFP 176

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK---RLGGENL---LH 251
           +PKV S VI    + N +P  L+   K  + +F ++RKTL  +L     L  E +     
Sbjct: 177 TPKVDSIVIKLTKNNNILPTFLKQFIKFVKNSFKQKRKTLLNNLSCQFLLSKETIIPFFL 236

Query: 252 QAGIETNLRAENLSIEDFCRIT 273
           Q  I   +RAE +++E F ++T
Sbjct: 237 QHHIPLQIRAEQVTLETFQKLT 258


>gi|261415778|ref|YP_003249461.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372234|gb|ACX74979.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326044|gb|ADL25245.1| dimethyladenosine transferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 261

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 113/260 (43%), Gaps = 11/260 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL D+     IA    +  G  V+EIG G G LT+ LL  G  ++  +E D+Q
Sbjct: 6   RRKFGQNFL-DVETATAIAGDLPAEAGEFVLEIGPGHGALTEHLLNRG-LELTAVEIDEQ 63

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +L +    + N   I+  D LK D + F +  +   +  NLPYN+ T ++   +   
Sbjct: 64  CVEVLNEKFKDYKN-FNIVNIDFLKFDLQAFLDAHAKPWVTGNLPYNVSTAIIAGLMPRL 122

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +  +    Q EV ERI A+  S +YG LSVL        ++  I P  F P P V
Sbjct: 123 HLTKGFMGMV---QLEVAERICAEPCSSNYGSLSVLVSAFANTQILRKIGPEHFTPKPNV 179

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIET 257
            S  +   P  + I    +      + AF ++RKTL  S  R   +  +          T
Sbjct: 180 DSATMLLTPREDAI-QAPDGFFDFVRTAFTQKRKTLANSFGRNYDKKKIQATIELLDWPT 238

Query: 258 NLRAENLSIEDFCRITNILT 277
            +RAE LS E F        
Sbjct: 239 TIRAEELSPEQFLNFYKAFK 258


>gi|47459399|ref|YP_016261.1| dimethyladenosine transferase [Mycoplasma mobile 163K]
 gi|62900531|sp|Q6KH80|RSMA_MYCMO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|47458729|gb|AAT28050.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma
           mobile 163K]
          Length = 254

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 123/262 (46%), Gaps = 15/262 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              KK +GQNFL D NI++KI      L+   V+EIG G G LT  LL   ++ V+  E 
Sbjct: 3   HNFKKSLGQNFLQDKNIIEKIVNFI-PLENEDVLEIGPGQGALTN-LLVKKSKNVLAYEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++  P LK+          +  +D LK +     +      IIAN+PY I + +LF   
Sbjct: 61  DKELIPFLKEKIKAK--NFTLKHEDFLKSE----IDFQDKKIIIANIPYFITSDILFKIF 114

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                  F+    ++ QKE+ +++ A+ N  +YG+LSV + +      + ++    F+P 
Sbjct: 115 ENHK---FFTKALIMVQKEIADKLIAKANDSNYGKLSVSSQFFANIKKVINVPRTCFYPQ 171

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAG 254
           P V S V++F    +     +E      +  F ++RK L  +LK +      +++L +  
Sbjct: 172 PNVDSAVVYFEFKNDIENIDIEKFLVFIKTCFSQQRKKLSNNLKNVYDLEKIKSVLKKLN 231

Query: 255 IETNLRAENLSIEDFCRITNIL 276
           +   +R + + +  +  +   L
Sbjct: 232 LSFEVRPQQIDLNVYKILFYEL 253


>gi|313678187|ref|YP_004055927.1| dimethyladenosine transferase [Mycoplasma bovis PG45]
 gi|312950337|gb|ADR24932.1| dimethyladenosine transferase [Mycoplasma bovis PG45]
          Length = 262

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 124/264 (46%), Gaps = 14/264 (5%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK  GQNFL + +++KKI +     +G  ++EIG G G LT+ L+   ++ V   E D
Sbjct: 9   RAKKKFGQNFLNNADVVKKIIDIINP-EGKKILEIGPGTGALTKFLVDKCSKYV-AFEID 66

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 L + +  +    E+I  D L+ D     N  +   ++ N+PY I + ++   I 
Sbjct: 67  TDMIAFLNENNYFNLGSTELIHKDFLEAD----LNQYACFEVVGNIPYYITSDIILKIID 122

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  ++  TLL QKEV +RI A  NSP Y +LS+   +  K      +  + F P P
Sbjct: 123 NR---FLFKRATLLVQKEVADRIIATPNSPDYSKLSITCQYVAKVKKELFVGRNNFTPVP 179

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GI 255
           KV S ++ F  + N       +LK   +  F  RRK L  SLK+   +  +  A     I
Sbjct: 180 KVDSAIVTFDFYQNKDD-NYSNLKPFFKLCFSARRKKLMWSLKQTYNQEKVQNAYKTLNI 238

Query: 256 ETNLRAENLSIEDFCRITNILTDN 279
           + N+R + L+++   ++   L  N
Sbjct: 239 DENIRIQQLNLDTIIKLYEQLESN 262


>gi|257126070|ref|YP_003164184.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b]
 gi|257050009|gb|ACV39193.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b]
          Length = 287

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 18/278 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           + +     KK  GQNFL D N+   I + +   +   V+EIG G G LT+ L+   ++ +
Sbjct: 15  IENENHKAKKKYGQNFLNDSNLSDDILDVANIDEKTEVLEIGPGLGFLTEKLIE-NSKFL 73

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-----ISSPIRIIANLPYN 128
              E D    P L     +  N  ++I  D ++VD ++FF          ++++AN+PY 
Sbjct: 74  TAFEIDDDLIPFLNKKFQKKEN-FKLIHQDFMEVDLKEFFENEENKSKKNVKVVANIPYY 132

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + ++   +         + + L+ QKEV ERI +Q +S +   L+    +  +   +F
Sbjct: 133 ITSPIINKLLEYREN---IDEIYLMVQKEVAERIASQPHSKNMSLLTHAVQFYAETEYLF 189

Query: 189 DISPHVFFPSPKVTSTVI---HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
            +    F P PKV S  +                E   K  +EAF  +RK++  +L +LG
Sbjct: 190 TVPKEKFDPVPKVDSAFLGIKILKDKRYESQISEEKYFKYLKEAFSNKRKSIANNLMKLG 249

Query: 246 GE-----NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                  N L + G     R E  S+++F     IL  
Sbjct: 250 FSKDVVGNALEKVGKTRLARTEEFSVQEFIDFIGILES 287


>gi|91790683|ref|YP_551635.1| dimethyladenosine transferase [Polaromonas sp. JS666]
 gi|118600882|sp|Q121Q5|RSMA_POLSJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91699908|gb|ABE46737.1| dimethyladenosine transferase [Polaromonas sp. JS666]
          Length = 330

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 129/312 (41%), Gaps = 56/312 (17%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVI 76
           K IP+K  GQ+FL D  I++ I ++     G  V+EIG G   LTQ L+   G   VI +
Sbjct: 19  KHIPRKRFGQHFLTDQGIIEGIVQAIAPRAGQAVVEIGPGLAALTQPLVERLGHLTVIEL 78

Query: 77  EKD-----------------------QQFFPILKD---ISSQHPNRLEIIQD-------- 102
           ++D                       +Q    L+     S+  P      +         
Sbjct: 79  DRDLAQQLRAHPQLTVVESDVLKVDFRQLAERLQHGPVRSAGLPQAETAPKGLEPAGSSS 138

Query: 103 -----DALKVDFEKFFNISS------------PIRIIANLPYNIGTRLLFNWISADTWPP 145
                D L+                        +R++ NLPYNI T +LF+ + A     
Sbjct: 139 QQGPRDWLRQTAGAAAPSRGSAVHEVTSVGAHKLRVVGNLPYNISTPILFHLLDA---VD 195

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             E    + QKEV +R+ A  ++  YGRLSV+  WR     +  + P  F P P+V S V
Sbjct: 196 VIEDQHFMLQKEVIDRMVAAPSTSDYGRLSVMLQWRYAMENVLFVPPQSFDPPPRVDSAV 255

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
           +  +PH +P    ++ L ++ Q AF +RRK LR +L +         A  +   RAE + 
Sbjct: 256 VRMVPHAHPAALDVKLLSQLVQVAFSQRRKLLRHTLGQWLTARGFPGA-FDVQRRAEEVP 314

Query: 266 IEDFCRITNILT 277
           + ++  +   + 
Sbjct: 315 VAEYVALAQQVA 326


>gi|312879958|ref|ZP_07739758.1| dimethyladenosine transferase [Aminomonas paucivorans DSM 12260]
 gi|310783249|gb|EFQ23647.1| dimethyladenosine transferase [Aminomonas paucivorans DSM 12260]
          Length = 287

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 121/255 (47%), Gaps = 8/255 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL+D  +++ +  ++       V+E+G G G LT+ LL    RKV  +E D++  P 
Sbjct: 14  GQNFLVDPKVVRDLVAAAAPDPDTVVLEVGPGKGILTEALLGSPCRKVFSLEIDRRLEPF 73

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L+ + +++  +  ++  DAL+V F+       P  + ANLPY+I T L++ ++  +  P 
Sbjct: 74  LEPLFARYAPKGTLLWGDALRVTFQDLL-PEIPHLVAANLPYHITTPLIWKFLE-ELTPR 131

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
              +L L+ Q+E   R+ AQ+ S     L +          +  +SP  F P P+V ST+
Sbjct: 132 GTRTLVLMVQREAAWRLMAQEGSRDRTPLGITLQRMGTLRKVRAVSPGAFRPIPQVASTI 191

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS------LKRLGGENLLHQAGIETNL 259
           +       P      S +   + +F +RRKTL  +      L R   E  L    +    
Sbjct: 192 LEIRIQREPDLANDPSWRAFVRGSFAQRRKTLVNNWIAGWRLPREEAEGRLAPLALPRTA 251

Query: 260 RAENLSIEDFCRITN 274
           R E L++  + R+  
Sbjct: 252 RPEELTLPQWIRLAQ 266


>gi|288575051|ref|ZP_06393408.1| dimethyladenosine transferase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570792|gb|EFC92349.1| dimethyladenosine transferase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 268

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 10/264 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             PK  +GQNFL++ +I+++  E +       ++EIG G G LT+ +L+     +  IE 
Sbjct: 7   FTPKTSLGQNFLINRDIVRRTVERADITKKDVILEIGPGQGVLTREILSSPCSHLHSIEI 66

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++  P LKDI  +  +R  +   D +K  + +   +  P +++AN+PY++ T L+++ +
Sbjct: 67  DRRLEPFLKDI--EEDDRFSLHWGDGVKFPYGELRPV--PSKVVANIPYHVTTPLIWSIL 122

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                P     + L+ QKE  +R+ AQ  +     L +       A     +SP  F P 
Sbjct: 123 E-KLAPSGLSYMILMVQKEAADRLVAQACTKERYPLGITLAAMGSAKTYMKVSPGSFRPI 181

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQA 253
           PKV+S ++                +K+ +  F +RRK L  +L  LG +     +L+ ++
Sbjct: 182 PKVSSALVELTIERRRDLPSDNLWRKVLKAGFSQRRKKLANNLVSLGIKKEEILDLMDRS 241

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           GI +  RAE LS+  +      L 
Sbjct: 242 GIPSEARAETLSVYQWLEFVESLR 265


>gi|296109078|ref|YP_003616027.1| dimethyladenosine transferase [Methanocaldococcus infernus ME]
 gi|295433892|gb|ADG13063.1| dimethyladenosine transferase [Methanocaldococcus infernus ME]
          Length = 269

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 131/270 (48%), Gaps = 21/270 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              KK +GQ+FL+D N + K  E +   +   V+EIG G G LT+ L    A+KV VIE 
Sbjct: 2   HKYKKSLGQHFLVDKNFVYKAIEGANLKEDDKVLEIGLGKGILTEELCKR-AKKVYVIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+        + +++ N L II DDALKV+ ++        +++ANLPY I + + F  +
Sbjct: 61  DKNLESFANSLINKYKN-LNIIWDDALKVNLKEI----DYNKVVANLPYQISSPITFKLL 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   ++   L++Q E  +R+ A++ +  YGRLSV    +  A ++  + P  F+P 
Sbjct: 116 DRG-----FDLSVLMYQLEFAKRMIAKEGTKDYGRLSVSLQAQANAEILCKVPPSAFYPR 170

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS---------LKRLGGENL 249
           PKV S ++   PH        E    + + AF  R K L+++         L R   + +
Sbjct: 171 PKVWSALVKIEPHNKYKILNKEFFNNLVRGAFQHRNKFLKKALILSSSELGLSREELKKI 230

Query: 250 LHQA-GIETNLRAENLSIEDFCRITNILTD 278
           L          +   +S+E+F  ++N L +
Sbjct: 231 LEDIEDKTLEKKVFKVSVEEFVNLSNKLYE 260


>gi|302682452|ref|XP_003030907.1| hypothetical protein SCHCODRAFT_56433 [Schizophyllum commune H4-8]
 gi|300104599|gb|EFI96004.1| hypothetical protein SCHCODRAFT_56433 [Schizophyllum commune H4-8]
          Length = 329

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 12/231 (5%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+ V  +E D +  
Sbjct: 41  RFGQHILNNPLVAQGIVDKANLKPTDNVLEVGPGTGNLTVRILD-KAKHVTAVEMDPRMA 99

Query: 84  PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L       P   +L+II  D +K D   F         I+N PY I + L+F  +S  
Sbjct: 100 AELTKRVQGKPEQRKLDIIIGDFVKADLPYF------DVCISNTPYQISSPLVFRLLSHR 153

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P       L+FQ+E   R+ A+  +  + RLS       K   +  ++   F P P V
Sbjct: 154 PLP---RVCILMFQREFALRLVARPGTEFWSRLSANVQLYAKVDHVMKVAKSCFRPPPMV 210

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S+V+  +P   P P   E    +T+  F +  K +  + +  G   +L  
Sbjct: 211 ESSVVRIVPLDPPPPVRFEEFDGLTRIIFARPNKVVHANFQARGVLEMLEA 261


>gi|71656161|ref|XP_816632.1| ribosomal RNA adenine dimethylase family protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70881773|gb|EAN94781.1| ribosomal RNA adenine dimethylase family protein, putative
           [Trypanosoma cruzi]
          Length = 344

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 13/245 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           LKT  S   ++  K  GQ+ L +  ++  I E +       V+EIG G GNLT+ LL + 
Sbjct: 51  LKTGGSQCGMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQV- 109

Query: 70  ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++KVI  E D +    L       P  ++L++I+ + L  +F  F       + +AN+PY
Sbjct: 110 SKKVIAFEVDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPY 163

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + L+F  +      P ++   L+FQ+E   R+ AQ  +  Y RLSV +    + + +
Sbjct: 164 AISSALVFKLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHL 219

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
             IS + F P PKV S+VI   P         E    + +  F ++ K +    +     
Sbjct: 220 MKISKNSFNPPPKVESSVIRLDPKHPAPDVDFEEWDGLVKFIFNRKNKKVSSIFRTKNAV 279

Query: 248 NLLHQ 252
             L++
Sbjct: 280 QTLYE 284


>gi|293364052|ref|ZP_06610788.1| dimethyladenosine transferase [Mycoplasma alligatoris A21JP2]
 gi|292552542|gb|EFF41316.1| dimethyladenosine transferase [Mycoplasma alligatoris A21JP2]
          Length = 259

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 80/272 (29%), Positives = 126/272 (46%), Gaps = 17/272 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +    +  KK  GQNFL D N+L +I       +   V+EIG G G+LT+ LL   A  V
Sbjct: 1   MKQNNLNAKKRFGQNFLKDQNVLNRIVNLVDL-ENQNVLEIGPGRGDLTKKLL-QKANFV 58

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
              E D+     L +   +     +++ +D L+ D     N      IIAN+PY I T +
Sbjct: 59  KAYEIDRDLVRFLNEEIKE--EHFQLVPNDFLQEDISGLKN----YWIIANIPYYITTEI 112

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F  +        +    L+ QKEV ERI A+KNS  Y +LS+   + +     F +  +
Sbjct: 113 IFKILEN---IQNFYGAILMVQKEVAERIEAKKNSSEYSKLSLTCQYYSTTKKEFIVKAN 169

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENL 249
            F P+PKV S +I    + N      + +    +  F +RRK L  SLK+       E+ 
Sbjct: 170 SFIPAPKVDSAIISLTFNKNR--VWNKEINNFFKLCFLQRRKKLSFSLKQKYSLEKIESS 227

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             +  + TN R + L +E   ++ N L D ++
Sbjct: 228 FEKLDLTTNTRIQELDLEKVLQLYNYLEDKEN 259


>gi|124808498|ref|XP_001348329.1| dimethyladenosine transferase, putative [Plasmodium falciparum 3D7]
 gi|23497221|gb|AAN36768.1|AE014818_33 dimethyladenosine transferase, putative [Plasmodium falciparum 3D7]
          Length = 381

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 11/231 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI  ++       V+EIG G GNLT  LL L A+KVI I+ D + 
Sbjct: 74  KKHGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRM 132

Query: 83  FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +K     +  N LE+ + DA+K  F KF          AN+PY I + L+F  IS  
Sbjct: 133 ISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF------DVCTANIPYKISSPLIFKLISHR 186

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P ++   L+FQKE  ER+ A     +Y RL++      K T + +++   F P PKV
Sbjct: 187 ---PLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKV 243

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S ++  IP  +      +    + +  F ++RKTL    KR    N+L  
Sbjct: 244 DSVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 294


>gi|54020652|ref|YP_116181.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 232]
 gi|62900495|sp|Q5ZZN4|RSMA_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|53987825|gb|AAV28026.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 232]
          Length = 259

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 124/263 (47%), Gaps = 15/263 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK +GQNFL D  I +KI E+        +IEIG G G LT  LL   A+ V   E D+
Sbjct: 6   PKKRLGQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLE-KAKFVTCYEIDK 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              PIL+         L II +D L       F       IIANLPY I +++LF   + 
Sbjct: 64  NLIPILEKKFKNK--NLRIINEDFL----LAEFESKEKKTIIANLPYYITSKILFKIFAN 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 ++ + L+ Q EV +RI A+  +P Y +LS+ + +  K   +F + P  FFP PK
Sbjct: 118 FEK---FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAKVRKLFVVGPDSFFPKPK 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256
           V S V+ F    N     +E+    T+  F  +RKTL  +L     +  + +        
Sbjct: 175 VNSAVVSFDFRANLDAKEMENFFWFTKRCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFA 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            N+R + L +  + R+ +   +N
Sbjct: 235 QNIRPQQLDLVTYIRLADFYFNN 257


>gi|190348449|gb|EDK40904.2| dimethyladenosine transferase [Meyerozyma guilliermondii ATCC 6260]
          Length = 497

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI  E 
Sbjct: 207 FKFNTNLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQ-ARKVIASEM 265

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K D   F         I+N PY I + L+F 
Sbjct: 266 DPRMAAELTKRVHGTPQQKKLEILLGDFIKTDLPYF------DVCISNTPYQISSPLVFK 319

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 320 LLNQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 376

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+             +    + +  F ++ KT+    K      +L +
Sbjct: 377 PPPQVESSVVRIEIKNPRPNIDFDEWDGLLRICFVRKNKTIAAGFKSQNVLEILEK 432


>gi|212223555|ref|YP_002306791.1| dimethyladenosine transferase [Thermococcus onnurineus NA1]
 gi|226732633|sp|B6YTK7|RSMA_THEON RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|212008512|gb|ACJ15894.1| dimethyladenosine transferase [Thermococcus onnurineus NA1]
          Length = 272

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 133/282 (47%), Gaps = 27/282 (9%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +++S Y +     +GQNFL+  +I+++  E +       V+EIG G G LT  L    A 
Sbjct: 7   SLISKYGLRANSDLGQNFLIVDDIIERNVERAELSGRDVVLEIGPGLGVLTDALSKR-AG 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV  IEKD +   IL+     + + +EII+ DALKVDF +F       +I++NLPY I +
Sbjct: 66  KVYAIEKDPRLVEILRK--EYNWSNVEIIEGDALKVDFPEF------NKIVSNLPYQISS 117

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            + F ++        +E   L++Q E  +R+ A+    +Y RLS++   ++   ++  I 
Sbjct: 118 PITFRFLGYG-----FERAVLIYQLEFAQRMVARPGDRNYSRLSLMVQAKSYVELVERIG 172

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
              F+P PKV S VI   P   P    +E  + + +  F  RR T+  +LK+      L 
Sbjct: 173 RGAFYPRPKVDSAVIVLEPK--PKSEVIELNEDLVRALFQHRRSTVAAALKKSHHMLGLS 230

Query: 252 QAGIE-----------TNLRAENLSIEDFCRITNILTDNQDI 282
           +A  +              R   LS E+   I   L  N  I
Sbjct: 231 KAEFKNVKDVISSAPYAEKRVFQLSPEEVKEIEAYLKVNNII 272


>gi|152989813|ref|YP_001355535.1| dimethyladenosine transferase [Nitratiruptor sp. SB155-2]
 gi|151421674|dbj|BAF69178.1| dimethyladenosine transferase [Nitratiruptor sp. SB155-2]
          Length = 278

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 18/271 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNFL D +++ KI +S        ++EIG G G+LTQ LL    + VI  E 
Sbjct: 3   VAAKKKFGQNFLKDKSVVNKIIQSM-PNTDNVIVEIGPGLGDLTQELLKK--KDVIAFEI 59

Query: 79  DQQFFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D     +L++  S+   +  L++   D L    +   +      ++ANLPY + T ++  
Sbjct: 60  DPDLCTLLQEKFSESLEKRALKLHCGDVLDRWKQHLVDKE--YDLVANLPYYVATNIVLR 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P  +++ ++ QKEV ++  A+     +  LSVL G   +   +  + P+ F 
Sbjct: 118 ALRD----PNCKNILVMLQKEVADKFCAKPGQREFSALSVLAGSAGEVQRVTVVKPNSFT 173

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ---- 252
           P PKV S VI    + +      ++ +   + AF + RKTL ++L +   + LL Q    
Sbjct: 174 PPPKVDSAVILIKKNRS---IDDDNFETFLKIAFRQPRKTLLKNLAQSYPKELLQQLFQT 230

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            G+ +N+R    S   + R+  +L +  D A
Sbjct: 231 LGVASNIRPHEASTSIYHRLYEMLKEKIDGA 261


>gi|254302694|ref|ZP_04970052.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322886|gb|EDK88136.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 264

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 124/268 (46%), Gaps = 17/268 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +KV  +E
Sbjct: 3   FKHKKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   S   N + ++  D L+VD  K+ N     +++AN+PY I + ++   
Sbjct: 62  IDKDLENTLRKKFSSKENYI-LVMGDVLEVDLRKYINQG--TKVVANIPYYITSPIINKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         +   ++ QKEVGERI A+      G L++   +  +   +F I    F P
Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGETEYLFTIPREFFNP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            P V S  I    + +         +   K  + AF  +RK +  +L  LG      + +
Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKEI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           L+Q  +  N RAEN+S + F  + NI  
Sbjct: 235 LNQIEVSENERAENISTDKFIELINIFE 262


>gi|84996835|ref|XP_953139.1| dimethyladenosine transferase [Theileria annulata strain Ankara]
 gi|65304135|emb|CAI76514.1| dimethyladenosine transferase, putative [Theileria annulata]
          Length = 377

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 129/284 (45%), Gaps = 40/284 (14%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +I  K  GQ+ L +  +L KI +++      TV+EIG G GN T  L+TL A+KV+ I+
Sbjct: 67  GMIFVKKYGQHMLKNPGVLDKIIKAAEIRPTDTVLEIGPGTGNWTVRLVTL-AKKVVAID 125

Query: 78  KDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D +    +K+   Q     LE+I+ DAL+  F +F         +ANLP+ I +  +F 
Sbjct: 126 VDSRMISEVKNRCFQLGYTNLEVIEADALRTTFPRF------DICMANLPFQISSPFIFK 179

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S     P + S  L+FQKE  ER+ A  N   YGRL++ T      T +  IS   F 
Sbjct: 180 LLSHR---PLFRSAILVFQKEFAERLLASTNDDKYGRLAINTRLFCTVTRICKISAGSFN 236

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL------------ 244
           P PKV S V+  +P   P+         + +  F ++R+TLR   K+             
Sbjct: 237 PPPKVDSMVVKIVPRQQPLVVDFGEWDGMIRICFSRKRRTLRSLFKKQSVLSILESNYKS 296

Query: 245 ----------------GGENLLHQAGIETNLRAENLSIEDFCRI 272
                               +L  +G+    R+  +SI +F ++
Sbjct: 297 WCTINNKVPVYKPFKEFVIEILESSGL-AERRSITVSIAEFLKL 339


>gi|25146882|ref|NP_496061.2| hypothetical protein E02H1.1 [Caenorhabditis elegans]
 gi|27808654|sp|Q09522|DIMT1_CAEEL RecName: Full=Probable dimethyladenosine transferase; AltName:
           Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|20803714|emb|CAA87382.2| C. elegans protein E02H1.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 308

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 12/228 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I E S      TV+E+G G GNLT  +L + A+ VI  E D +    
Sbjct: 29  GQHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEV-AKTVIACEIDPRMIAE 87

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           +K      P  N+L++   D +K+++  FF++      +ANLPY I +  +   +     
Sbjct: 88  VKKRVMGTPLQNKLQVNGGDVMKMEWP-FFDVC-----VANLPYQISSPFVQKLLLHRPL 141

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P +     L+FQKE  +R+ A+     Y RLSV      K  M+  +    F P PKV S
Sbjct: 142 PRY---AVLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDS 198

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            V+   P   P P      + + +  F ++ KTL    +      ++ 
Sbjct: 199 AVVRIAPKNPPPPVNFVEWEGLLRLCFMRKNKTLMAIFRLSNVIEVIE 246


>gi|203288028|ref|YP_002223043.1| dimethyladenosine transferase [Borrelia recurrentis A1]
 gi|201085248|gb|ACH94822.1| dimethyladenosine transferase [Borrelia recurrentis A1]
          Length = 274

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 14/281 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N  +S+K +L +  I P+K  GQN+L++ NI  KI ++        + EIG G G
Sbjct: 1   MNINYNSINSIKNVLKNKNIAPRKIWGQNYLINENIRAKIIDALDIKKNEKIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T  LL   A  +   E D ++  IL +   Q  N  ++I+ D LK   ++  +I+   
Sbjct: 61  AMTATLL-NKANFLTAFEIDPKYSEILNEKFGQLKN-FKLIEGDFLKTYKQEKKSIN--- 115

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I++NLPYNI ++++   I  +        +    QKE+ +R+ A++ + +Y   ++L  
Sbjct: 116 KIVSNLPYNIASKVISTLIEDEILIH----MVFTVQKELADRMIAREGNKNYSSFTILVQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI    F+P PKV ST I  IP    I    +   K+ +  F  RRK L+ 
Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTIKLIPCKENI-KNFQIFNKLIRTVFTSRRKKLKN 230

Query: 240 SLKR-LGGENLLHQAGIE--TNLRAENLSIEDFCRITNILT 277
           ++   +  EN+L +  ++   + R E +S+++F  I N LT
Sbjct: 231 TIINFIKNENILKKDFLKNFLDKRPEEISVKEFITIANKLT 271


>gi|318041295|ref|ZP_07973251.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Synechococcus sp. CB0101]
          Length = 270

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 115/255 (45%), Gaps = 16/255 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQ++L D  +L +I  ++      TV+E+G G G LT+ LL   A  V  +E 
Sbjct: 6   HRTRKRFGQHWLKDERVLDQILAAAELSAADTVLEVGPGRGALTERLLASPAAAVRAVEL 65

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L++  S  P R ++   D L V   +         ++AN+PYNI   LL   +
Sbjct: 66  DRDLVEGLQERFSGDP-RFDLTPGDVLAVPLPEAG------IVVANIPYNITGPLLERLV 118

Query: 139 SADTWP--PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                P    +  L LL Q+EVGERI A+  S  Y  LSV      + + +  + P  F 
Sbjct: 119 GRLDRPVAQPYRRLVLLMQQEVGERIRARPGSSAYSALSVRMQLLARCSTVCLVPPRCFQ 178

Query: 197 PSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH-- 251
           P PKV S V+   P        P    +++ + +  F  RRK LR +L  L   + L   
Sbjct: 179 PPPKVMSEVVAIDPLPPDQQLDPALARTVETLLRRCFAARRKMLRNTLAGLQPPDQLQAL 238

Query: 252 --QAGIETNLRAENL 264
             +AGI    R + +
Sbjct: 239 TAEAGIGLEQRPQEV 253


>gi|148886595|sp|Q4A775|RSMA_MYCH7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|144575570|gb|AAZ54014.2| dimethyladenosine transferase [Mycoplasma hyopneumoniae 7448]
          Length = 259

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 123/263 (46%), Gaps = 15/263 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQNFL D  I +KI E+        +IEIG G G LT  LL   A+ V   E D+
Sbjct: 6   PKKHLGQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLER-AKFVTCYEIDR 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              PIL+         L II +D L               IIANLPY I +++LF   + 
Sbjct: 64  NLIPILEKKFKNK--NLRIINEDFL----LAELEFKEKKTIIANLPYYITSKILFKIFAN 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 ++ + L+ Q EV +RI A+  +P Y +LS+ + +      +F + P  FFP PK
Sbjct: 118 FEK---FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFFPKPK 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256
           V S V+ F    N     +E     T++ F  +RKTL  +L     +  + +        
Sbjct: 175 VNSAVVLFDFRENLEAKKMEEFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFA 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            N+R + L +  + R+ +   +N
Sbjct: 235 QNIRPQQLDLVTYIRLADFYFNN 257


>gi|260943356|ref|XP_002615976.1| dimethyladenosine transferase [Clavispora lusitaniae ATCC 42720]
 gi|238849625|gb|EEQ39089.1| dimethyladenosine transferase [Clavispora lusitaniae ATCC 42720]
          Length = 322

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKV+ +E 
Sbjct: 28  FKFNTNLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQ-ARKVVAVEM 86

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K D   F         I+N PY I + L+F 
Sbjct: 87  DPRMAAELTKRVHGTPQQKKLEILLGDFMKTDLPYF------DVCISNTPYQISSPLVFK 140

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 141 LLNQPKPP---RVSILMFQREFALRLLARPGDGLYCRLSANVQMWANVTHIMKVGKNNFR 197

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+                  + +  F ++ KT+    K      +L +
Sbjct: 198 PPPQVESSVVRIEVKQPRPNIDFNEWDGLLRICFVRKNKTIAAGFKSNNVLEILEK 253


>gi|119953374|ref|YP_945583.1| dimethyladenosine transferase [Borrelia turicatae 91E135]
 gi|119862145|gb|AAX17913.1| dimethyladenosine transferase [Borrelia turicatae 91E135]
          Length = 278

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 145/284 (51%), Gaps = 14/284 (4%)

Query: 1   MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +N N  +S+K+ L+   I P+K  GQN+L++ +I +KI ++    +   + EIG G G
Sbjct: 1   MNINYNSINSIKSALASKNIAPRKIWGQNYLINEHIREKIVDTLEIKENENIWEIGPGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            +T +LL      + V E D ++  IL +   Q  N  ++I+ D LK   ++  NI+   
Sbjct: 61  AMTIILLK-KTNFLTVFEIDPKYSEILNEQFGQFKN-FKLIKGDFLKTYKQERQNIN--- 115

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +I +NLPYNI ++++   I           +    QKE+ +R+ A++ + +Y   +VL  
Sbjct: 116 KIFSNLPYNIASKVISMLIEDG----ILTHMVFTVQKELADRMLAKEGNKNYSSFTVLVQ 171

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  + DI    F+P PKV ST +  IP    I    ++  K+ +  F  RRK L+ 
Sbjct: 172 SHFNVIKIMDIDKKNFYPIPKVKSTTLKLIPCKRVI-KDFKAFNKLVRTVFISRRKKLKN 230

Query: 240 SLKRLGGE-NLLHQAGIE--TNLRAENLSIEDFCRITNILTDNQ 280
           ++     + ++L +  ++   + R E +S+++F  I+N LT N 
Sbjct: 231 TIINFTKDGSILEEDFLKRFLDKRPEEISVKEFITISNKLTTNH 274


>gi|307298762|ref|ZP_07578565.1| dimethyladenosine transferase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915927|gb|EFN46311.1| dimethyladenosine transferase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 265

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 14/263 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
               I   K +GQNFL    + ++I ES       T++EIG G G+LT +LL  G R VI
Sbjct: 4   KSINIRLNKALGQNFLKSDRVSRRIVESVELNPSTTIVEIGVGSGSLTSILLEKGYR-VI 62

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
             E D +F    + +  +   R E+  +D LK D      +   +  +AN+PY I + ++
Sbjct: 63  GFEIDTRFSEGNRRLEGE---RCELRYEDFLKAD---LSTLPDSVTYVANIPYYITSPII 116

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
              +      P ++   L+ QKE  +R+TA   +  YG L+V     ++   +F +S   
Sbjct: 117 ERIMFD---GPSFDRAVLMVQKEYADRLTATPRTKEYGILTVNVNTFSEVRELFQVSRKE 173

Query: 195 FFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLL 250
           F P P+V S VI      NP       +  +K  +  F +RRK L+ +LK +    E LL
Sbjct: 174 FIPQPEVDSMVIELSLLENPPIGEARRDQYRKFVRHCFSQRRKKLKNNLKSIVDLPEELL 233

Query: 251 HQAGIETNLRAENLSIEDFCRIT 273
               I  ++RAE LS++DF  + 
Sbjct: 234 GSMAIGVDVRAEELSVDDFVSLF 256


>gi|238764652|ref|ZP_04625597.1| Dimethyladenosine transferase [Yersinia kristensenii ATCC 33638]
 gi|238697144|gb|EEP89916.1| Dimethyladenosine transferase [Yersinia kristensenii ATCC 33638]
          Length = 214

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/210 (35%), Positives = 114/210 (54%), Gaps = 7/210 (3%)

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNI 129
             + VIE D+     L     Q  ++L I Q+DA+K++F +        +R+  NLPYNI
Sbjct: 2   DHMTVIELDRDLAARLASH-PQLKDKLTIHQEDAMKINFSELAEQAGQSLRVFGNLPYNI 60

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T L+F+  S          +  + QKEV  R+ A  NS  YGRL+V+  +      + +
Sbjct: 61  STPLMFHLFSYTNA---IRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNVIPVLE 117

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           + P  F P+PKV S V+  IPH+N P P   +  L +IT +AF +RRKT+R SL  L   
Sbjct: 118 VPPTAFTPAPKVDSAVVRLIPHVNMPNPVGDVRMLTRITTQAFNQRRKTVRNSLGDLFTS 177

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             L + GI+  +RAEN+S+  +C++ N L+
Sbjct: 178 EQLIELGIDPIMRAENISVAQYCKLANWLS 207


>gi|327348821|gb|EGE77678.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 383

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 20/256 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +      TV+EIG G GNLT  +L   A+KVI +E 
Sbjct: 32  FRMNTDIGQHILKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVEL 90

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   RLE++  D +K D   F         I+N PY I + L F 
Sbjct: 91  DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFK 144

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++ D  P       L+FQ+E   R+ A+     Y RLSV      +   +  +  + F 
Sbjct: 145 LLAIDPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFK 201

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P V S+V+  +P         +    + + AF ++ KT+R S   LG  ++L    +E
Sbjct: 202 PPPAVESSVVRIVPKNPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLD--MLE 257

Query: 257 TNLRA----ENLSIED 268
           +N R      N+ +ED
Sbjct: 258 SNYRTWCAQNNIPVED 273


>gi|284989485|ref|YP_003408039.1| dimethyladenosine transferase [Geodermatophilus obscurus DSM 43160]
 gi|284062730|gb|ADB73668.1| dimethyladenosine transferase [Geodermatophilus obscurus DSM 43160]
          Length = 288

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/276 (27%), Positives = 121/276 (43%), Gaps = 17/276 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
             +++ +    ++ P K +GQNFL D N +++I  ++       V+E+G        + L
Sbjct: 15  PAAIRDLAQQLELRPTKALGQNFLHDANTIRRIVRTAELTREDVVLEVGP-GLGSLTLGL 73

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A  V  +E D +   +L     + +    +RL +++ DAL++   +     +P  ++
Sbjct: 74  LPAAAHVTAVEIDPRLAALLPRTVAERAPALADRLTVVEADALRI---REVPGRAPTALV 130

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L          P      +L Q EV ER+ A   SP YG  S    W  
Sbjct: 131 ANLPYNVAVPVLL---HLLELLPTLRRALVLVQAEVAERLAAAPGSPAYGVPSAKAAWYG 187

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +     ++   VF+P P V S ++       P      +   +   AF  RRK LR +L 
Sbjct: 188 EVRRAGNVGRRVFWPEPNVDSGLVALDRR-PPPAGDRAATFTVIDAAFATRRKGLRAALA 246

Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           R  G     E  L  AGI+   R E LS+ DF R+ 
Sbjct: 247 RWAGGPAAAEARLRAAGIDPTTRGEQLSVADFARLA 282


>gi|168011526|ref|XP_001758454.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690489|gb|EDQ76856.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 318

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 136/295 (46%), Gaps = 25/295 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
            ++LK  L      PKK++GQ+++L+  +   + E++    G  V+EIG G G+LT  L+
Sbjct: 30  RNTLKA-LKSQNHRPKKWLGQHYMLNDQVNIDMVEAAKIQPGDLVLEIGPGTGSLTNALV 88

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-----------NI 115
             GA  +I +EKD     ++ +    H  ++EII +D +K     +              
Sbjct: 89  EAGAD-IIAVEKDPDMAALITERF-GHCGQVEIINEDFVKWPAALYMQQALRKRFGESEP 146

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRL 174
               ++IANLP+NI T+++   +        +  + LL Q E   R+  A  ++  Y  +
Sbjct: 147 PPRAKVIANLPFNITTQVVKQLL---PLGCTFSHIILLLQDEAAIRLVDASPDAEEYRPI 203

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFG 231
           S+L  + +     F +    F P PKV + V+ F        P    ++S   +   AF 
Sbjct: 204 SILINFFSVPEYKFRVERDNFLPPPKVDAGVVSFALKQESEYPQVSSIKSFFTMVNSAFN 263

Query: 232 KRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            +RK LR+SL+ L      ++ L   G+    R E L+++ F  + N L D + I
Sbjct: 264 GKRKMLRKSLQHLHSPEATKSALTSIGLLETARPEELTLDQFVALHNTLNDPETI 318


>gi|312601595|gb|ADQ90850.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma
           hyopneumoniae 168]
          Length = 259

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 122/263 (46%), Gaps = 15/263 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQNFL D  I +KI E+        +IEIG G G LT  LL   A+ V   E D+
Sbjct: 6   PKKHLGQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLE-KAKFVTCYEIDR 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              PIL+         L II +D L               IIANLPY I +++LF   + 
Sbjct: 64  NLIPILEKKFKNK--NLRIINEDFL----LAELESKEKKTIIANLPYYITSKILFKIFAN 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 ++ + L+ Q EV +RI A+  +P Y +LS+ + +      +F + P  FFP PK
Sbjct: 118 FEK---FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFFPKPK 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256
           V S V+ F    N      E     T++ F  +RKTL  +L     +  + +        
Sbjct: 175 VNSAVVFFDFRENLEAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFA 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            N+R + L +  + R+ +   +N
Sbjct: 235 QNIRPQQLDLVTYIRLADFYFNN 257


>gi|182415366|ref|YP_001820432.1| ribosomal RNA adenine methylase transferase [Opitutus terrae
           PB90-1]
 gi|254807877|sp|B1ZW80|RSMA_OPITP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|177842580|gb|ACB76832.1| ribosomal RNA adenine methylase transferase [Opitutus terrae
           PB90-1]
          Length = 277

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 128/278 (46%), Gaps = 14/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M     + + +L+     PK+++GQNFL+D NI++K  E +    G  V+EIG G G LT
Sbjct: 1   MPLTPTATRELLAQLGHQPKRFLGQNFLVDGNIVRKSLELAQVRRGDAVVEIGPGLGTLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDDALKVDFEKF-FNISSPIR 120
             LL  GA +V  +EKD+     L      +HP+   +++ DA++          ++  +
Sbjct: 61  GALLEAGA-EVWAVEKDRTLHAHLSSTLQPRHPDTFHLLEADAVEHPLADLPAAHAAAFK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPY I T     W+ A    P  E + L+ Q+E  +R  A   S  +G +SV    
Sbjct: 120 IVANLPYAIATP----WLDAVLGGPLPERMVLMLQQEAAQRYVAMPGSKSFGAISVFLQS 175

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             +      +    FFP P V S ++H +    P     E +K + +  F +RRK +   
Sbjct: 176 AYEVAPGHRVEASCFFPRPDVDSYLLHLVRRAEPFVFTPE-VKALIRSVFQQRRKQIGGL 234

Query: 241 LKRLGGE------NLLHQAGIETNLRAENLSIEDFCRI 272
           L+    +        L  AG+ +  R E +  E +  +
Sbjct: 235 LRDRLPDHGASWLARLTAAGLSSLTRPEAIPTELWRAL 272


>gi|71425341|ref|XP_813086.1| ribosomal RNA adenine dimethylase family protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70877938|gb|EAN91235.1| ribosomal RNA adenine dimethylase family protein, putative
           [Trypanosoma cruzi]
          Length = 344

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 13/237 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++  K  GQ+ L +  ++  I E +       V+EIG G GNLT+ LL   ++KVI  E
Sbjct: 59  GMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLL-QASKKVIAFE 117

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L++I+ + L  +F  F       + +AN+PY I + L+F
Sbjct: 118 VDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPYAISSALVF 171

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      P ++   L+FQ+E   R+ AQ  +  Y RLSV +    + + +  IS + F
Sbjct: 172 KLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHLMKISKNSF 227

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S+VI   P         E    + +  F ++ K +    +       L++
Sbjct: 228 NPPPKVESSVIRLDPKHPAPDVDFEEWDGLVKFIFNRKNKKVSSIFRTKNAVQTLYE 284


>gi|325108886|ref|YP_004269954.1| dimethyladenosine transferase [Planctomyces brasiliensis DSM 5305]
 gi|324969154|gb|ADY59932.1| dimethyladenosine transferase [Planctomyces brasiliensis DSM 5305]
          Length = 305

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 28/293 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           KSH L+ +L+ Y I P+  +GQN+L+DLNI++ I   +       V+E+G G G +T  +
Sbjct: 9   KSH-LQQLLAQYGINPRGDLGQNYLIDLNIIEFIVSQAHLGPNDVVLEVGTGTGGMTAFM 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK-----------VDFEKFF- 113
           +   A  V+ +E D     +  D    H N L ++  DAL+           V  E+   
Sbjct: 68  VQQAAH-VVTVEVDTNMHRMASDQLGHHEN-LTLLHKDALRNKNNFAPEVLEVLQEQLAV 125

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
           + +  ++ +ANLPYNI T L+ N ++ +     WE + +  Q E+G R+ A      YG 
Sbjct: 126 DPARRLKFVANLPYNIATPLVSNLVATELP---WERMVVTIQLELGLRMGAGPGKSTYGA 182

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFG 231
           LS     +    ++  + P VF+P PKV S V+  +P+          +      +  F 
Sbjct: 183 LSAWLQAQAFVKVLKKLPPTVFWPRPKVDSAVVRLVPNPAGRKEIADRKFFHDFVRRVFL 242

Query: 232 KRRK--------TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +RRK          R+ L +   + +L    +  N RAE L       ++N L
Sbjct: 243 QRRKLLRSVLVGMYRKELSKPLVDEVLAAMELGPNTRAEELPPPQLVELSNRL 295


>gi|83025297|gb|ABB95741.1| mitochondrial transcription factor B1 [Tigriopus californicus]
          Length = 355

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 96/300 (32%), Positives = 139/300 (46%), Gaps = 24/300 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S + +L  Y I  K+ + QNF+LD   L KIA ++G L G TV+EIG GPG +T+ L
Sbjct: 1   PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--------- 116
           +  GAR+V+VIEKD +F   L+ +      R+ I   D LKV+  KF +           
Sbjct: 61  IGNGARQVLVIEKDARFLNPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120

Query: 117 -SPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITAQKNSPH 170
              IR+++NLP+NI    L   I          S       L FQKEV ERI A+    +
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAXDNLFSYGRVPAVLTFQKEVAERIIARPGDRN 180

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RLSVL     +A + + +    F P+  V   V+  +P   P I      L+K+    
Sbjct: 181 RSRLSVLCQNFAQARLKYTLKGGSFVPAASVDVGVMTLLPLRQPYIDLPFNFLEKVFTSL 240

Query: 230 FGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           F  ++K +R+++  L            LL    I  N  A +L + DF +I     D  D
Sbjct: 241 FHGKQKXVRKTIGHLFPNQNRLERAXILLSTCRIHPNRTAVSLDMNDFEKIAFTYKDMCD 300


>gi|160934055|ref|ZP_02081442.1| hypothetical protein CLOLEP_02918 [Clostridium leptum DSM 753]
 gi|156866728|gb|EDO60100.1| hypothetical protein CLOLEP_02918 [Clostridium leptum DSM 753]
          Length = 254

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 119/249 (47%), Gaps = 16/249 (6%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           +AE  G+ +G+  +EIG G G LT  L    A KV  IE D++  P+L++   +  N + 
Sbjct: 1   MAEECGAREGVCALEIGPGIGVLTYELARR-ADKVAAIELDRRLLPVLEETLGEFSN-VT 58

Query: 99  IIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           +I  D +K+D  +         P+ + ANLPY I + ++   +         +SLT++ Q
Sbjct: 59  VISGDVMKLDLRQVIQEQFGDKPVCLCANLPYYITSPVIMKVLEEKLP---VDSLTVMVQ 115

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           KE  +RI A+  S + G +S+   +  +  M+F +S   F P P V S VI       P 
Sbjct: 116 KEAAQRICAEPGSRNVGAVSIAVRYYAQPEMLFQVSRGSFLPPPNVDSAVIRLKIRETPA 175

Query: 216 PCCLES--LKKITQEAFGKRRKTLRQSL------KRLGGENLLHQAGIETNLRAENLSIE 267
               +     +  + AF +RRKTL  SL       +      L    I  N RAE L++E
Sbjct: 176 VSVEDEAFFFQTVKAAFAQRRKTLANSLSAGLAVSKQQALETLAACEIPPNARAEELTME 235

Query: 268 DFCRITNIL 276
            F R+++ L
Sbjct: 236 RFGRLSDAL 244


>gi|322823660|gb|EFZ29364.1| ribosomal RNA adenine dimethylase family protein, putative
           [Trypanosoma cruzi]
          Length = 344

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 13/237 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++  K  GQ+ L +  ++  I E +       V+EIG G GNLT+ LL + ++KVI  E
Sbjct: 59  GMVFNKGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQV-SKKVIAFE 117

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L++I+ + L  +F  F       + +AN+PY I + L+F
Sbjct: 118 VDSRMVAELNKRFQNTPLASKLQVIRGNCLDHEFPYF------DKCVANVPYAISSALVF 171

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      P ++   L+FQ+E   R+ AQ  +  Y RLSV +    + + +  IS + F
Sbjct: 172 KLLRK----PTFKCAVLMFQREFALRVCAQPGAEAYCRLSVNSQLLARCSHLMKISKNSF 227

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S+VI   P         E    + +  F ++ K +    +       L++
Sbjct: 228 NPPPKVESSVIRLDPKHPAPDVDFEEWDGLVKFIFNRKNKKVSSIFRTKNAVQTLYE 284


>gi|255728801|ref|XP_002549326.1| dimethyladenosine transferase [Candida tropicalis MYA-3404]
 gi|240133642|gb|EER33198.1| dimethyladenosine transferase [Candida tropicalis MYA-3404]
          Length = 324

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKV+ +E 
Sbjct: 30  FKFNTNLGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILE-KARKVVAVEM 88

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K +   F         I+N PY I + L+F 
Sbjct: 89  DPRMAAELTKRVHGTPQEKKLEILLGDFMKTELPYF------DICISNTPYQISSPLVFK 142

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E  +R+ A+     Y RLS         T +  +  + F 
Sbjct: 143 LLNQPRPP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFR 199

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+                  + +  F ++ KT+    K     ++L +
Sbjct: 200 PPPQVESSVVRIEVKNPRPNVDFNEWDGLLRICFVRKNKTIAAGFKSNNVIDILEK 255


>gi|170097177|ref|XP_001879808.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645211|gb|EDR09459.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 290

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 12/231 (5%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ+ L +    +KI +++       V+E+G G GNLT  +L   A+ V  +E D +  
Sbjct: 10  RFGQHILKNPATAQKIVDAANLKPTDKVMEVGPGTGNLTVKILE-KAKHVTAVEMDPRMA 68

Query: 84  PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             +       P   +LE+I  D +KVD   F         I+N PY I + L+F  +S  
Sbjct: 69  AEVIKRVQGTPEQRKLEVIIGDFVKVDMPYF------EVCISNTPYQISSPLVFRLLSHR 122

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P +    L+FQ+E   R+ A+  +  + RLS       K   + ++S + F P P+V
Sbjct: 123 ---PLFRVAILMFQREFAMRLVARPGTALWSRLSANVQLYAKVDNIINVSRNDFRPPPQV 179

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S+VI  +P   P P   E    + +  F +  KT+R + +  G   +L Q
Sbjct: 180 ESSVIRLVPIDPPPPVKFEEFDGLNRIIFSRPNKTVRGNFQAKGVMKMLEQ 230


>gi|284161199|ref|YP_003399822.1| dimethyladenosine transferase [Archaeoglobus profundus DSM 5631]
 gi|284011196|gb|ADB57149.1| dimethyladenosine transferase [Archaeoglobus profundus DSM 5631]
          Length = 251

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 129/260 (49%), Gaps = 18/260 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L+D   L KI   +       V+E+G G GNLT++LL    +KV  IE D +F
Sbjct: 5   KSKGQHILVDKKYLYKIVRYADLSYNDVVLEVGCGLGNLTRLLL-RSVKKVYGIEIDSRF 63

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL++  +      R  +I+ DALKVDF KF       + +AN+PY I + L F  +  
Sbjct: 64  CKILREKFADEIESGRFVLIEGDALKVDFPKF------DKFVANIPYQISSPLTFKLLKH 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D     ++   + +QKE  ER+ A++ S  YGRLSV+     +A ++  I P  F P PK
Sbjct: 118 D-----FKLAVVTYQKEFAERLVAREGSKKYGRLSVVAKAYCRAEILDIIPPKAFRPRPK 172

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET--- 257
           V S ++   P    +    E  + + + AF +RRK   + ++    E   ++A +     
Sbjct: 173 VESAIVRIFPEPEVVVENKEIFEDLVRFAFSRRRKKFGKIVEEWCKERG-YKAEVPEEYR 231

Query: 258 NLRAENLSIEDFCRITNILT 277
           + R E +  + + +I + + 
Sbjct: 232 DKRPEEIPAKVYAKIADEVA 251


>gi|284046698|ref|YP_003397038.1| dimethyladenosine transferase [Conexibacter woesei DSM 14684]
 gi|283950919|gb|ADB53663.1| dimethyladenosine transferase [Conexibacter woesei DSM 14684]
          Length = 273

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/281 (28%), Positives = 118/281 (41%), Gaps = 15/281 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+         +  + I P + +GQNFL+D NIL  IA ++       V+EIG G G L+
Sbjct: 1   MSEPVQPSLRRMRAFGIRPNRELGQNFLIDSNILDVIARAAELAPEDVVLEIGGGLGVLS 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + L    A  V V+E D+     L D    H     +   DA+++D         P +++
Sbjct: 61  EHLAERAAH-VHVVEIDRGLEDALHDALDPHAATTTLHMGDAMQLDLAALH--PQPTKVV 117

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I    +   +        W     + QKEVGER  A+  +  YG  SV+     
Sbjct: 118 ANLPYGIAAGAILRTVEQLPHATGW---VAMVQKEVGERFAARPATDAYGIPSVIAQLAC 174

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
              ++  +S  VFFP P V S ++         P    +L+   Q AF  RRKTL +S  
Sbjct: 175 DVRVLRPVSRRVFFPVPNVDSVLVGLERTG---PAAPRALRSFVQGAFAHRRKTLAKSAG 231

Query: 243 RLG------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
             G          L   G   ++RAE LS      +   L 
Sbjct: 232 IAGVAAPDATRAALEALGHPADVRAERLSPAQLRELWERLQ 272


>gi|332021836|gb|EGI62176.1| Putative dimethyladenosine transferase [Acromyrmex echinatior]
          Length = 266

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 117/268 (43%), Gaps = 40/268 (14%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNR 96
           + E +       V+EIG G GN+T  +L   A+KV+  E D +    L+       H ++
Sbjct: 1   MVEKAALRPTDVVLEIGPGTGNMTVKMLE-KAKKVVACEIDPRMIAELQKRVQGTIHQSK 59

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           L+I+  D LK D   FF++      +AN+PY I + L+F  +S     P +    L+FQ+
Sbjct: 60  LQIVYGDVLKSDLP-FFDLC-----VANIPYQISSPLVFKLLSHR---PLFRCAVLMFQR 110

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           E  ER+ A+     Y RLS+ T    +  M+  +  + F P PKV S V+   P   P P
Sbjct: 111 EFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESNVVRIEPRNPPPP 170

Query: 217 CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA--------------------GIE 256
              +    +T+ AF ++ KTL  + K+     +L +                      I+
Sbjct: 171 INYQEWDGLTRIAFVRKNKTLSAAFKQTTVVTMLEKNYKIHCSLNNKIVSDNFDIKQLID 230

Query: 257 --------TNLRAENLSIEDFCRITNIL 276
                    N RA  + I+DF  + +  
Sbjct: 231 HVLEKADAKNKRARTMDIDDFISLLHAF 258


>gi|242398592|ref|YP_002994016.1| Probable dimethyladenosine transferase [Thermococcus sibiricus MM
           739]
 gi|259494260|sp|C6A222|RSMA_THESM RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|242264985|gb|ACS89667.1| Probable dimethyladenosine transferase [Thermococcus sibiricus MM
           739]
          Length = 273

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 133/278 (47%), Gaps = 27/278 (9%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +++S Y + P   +GQNFL+  +++K+  E +   +  T++EIG G G LT  L    A 
Sbjct: 7   SLISKYNLKPNSDLGQNFLIVGDVIKREVERAEIKNSETILEIGPGLGVLTDELAKR-AG 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV  IEKD +   ILK     + + +EI+Q DALK+ F +F       ++++NLPY I +
Sbjct: 66  KVYAIEKDSRIIEILKK--EYNWSNVEIMQGDALKIKFPEF------NKVVSNLPYQISS 117

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            + F  +  D     +E   L++Q E  +R+ A+    +Y RLSV+   +    ++  I 
Sbjct: 118 PITFKLLKYD-----FERAVLIYQLEFAQRMVAKPGDKNYSRLSVMVQAKVNVDLVERIG 172

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
              F+P PKV S VI   P   P    +E  + + +  F  RRK   ++LK       L 
Sbjct: 173 RGAFYPKPKVDSAVIVMEPK--PKDEQIELNENLVKALFQHRRKLASKALKDSYHMLGLT 230

Query: 252 QAGI-----------ETNLRAENLSIEDFCRITNILTD 278
           +               +N R   LSIED   I   L +
Sbjct: 231 REDFKKFKPIIERVPHSNKRVFQLSIEDIKDIEEFLRN 268


>gi|148699068|gb|EDL31015.1| RIKEN cDNA D530005L17 [Mus musculus]
          Length = 1620

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 19/251 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +++ I + +       V+E+G G GN+T  LL   A+KV+  E D +    L       P
Sbjct: 147 VVESIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVAELHKRVQGTP 205

Query: 95  --NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             ++L+++  D LK D   F         +ANLPY I +  +F  +      PF+    L
Sbjct: 206 LASKLQVLVGDVLKSDLPFF------DACVANLPYQISSPFVFKLL---LHRPFFRCAIL 256

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           +FQ+E   R+ A+     Y RLS+ T        +  +  + F   PKV S+V+   P  
Sbjct: 257 MFQREFALRLVAKPGDKLYCRLSINTQLLAHVDHLMKVGKNNFRLPPKVESSVVRIEPKN 316

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIE 267
            P P   +    + +  F ++ KTL  + K    + LL +       ++  + +E+ SI 
Sbjct: 317 PPPPINFQEWDDLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVISEDFSIA 376

Query: 268 DFCRITNILTD 278
           D  +I +ILT 
Sbjct: 377 D--KIQHILTS 385


>gi|146414153|ref|XP_001483047.1| dimethyladenosine transferase [Meyerozyma guilliermondii ATCC 6260]
          Length = 497

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI  E 
Sbjct: 207 FKFNTNLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQ-ARKVIASEM 265

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K D   F         I+N PY I + L+F 
Sbjct: 266 DPRMAAELTKRVHGTPQQKKLEILLGDFIKTDLPYF------DVCISNTPYQISSPLVFK 319

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 320 LLNQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 376

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+             +    + +  F ++ KT+    K      +L +
Sbjct: 377 PPPQVESSVVRIEIKNPRPNIDFDEWDGLLRICFVRKNKTIAAGFKSQNVLEILEK 432


>gi|319760270|ref|YP_004124208.1| dimethyladenosine transferase [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038984|gb|ADV33534.1| dimethyladenosine transferase [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 269

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 94/264 (35%), Positives = 140/264 (53%), Gaps = 11/264 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ FL D NI+  I          T+IEIG G G LTQ +L +    +IVIE+D Q
Sbjct: 12  KKKWGQIFLTDQNIINSIINIFQPQHKQTIIEIGPGLGALTQPILNV-VDFLIVIERDPQ 70

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWIS 139
               L    + +  +L+I   D +K++F     +     IR+I NLPYNI T+L+ +   
Sbjct: 71  LTQKL--FQNFNTKKLKIFNTDVMKINFFNLIPLKSNQKIRLIGNLPYNIATQLIVHLFK 128

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
              +      +  + QKEVG+RI AQ NS  YGRLS++T +  + +   ++S   F P P
Sbjct: 129 ---YTKIIYDMHFMLQKEVGKRIIAQPNSKEYGRLSIMTQYHYQVSSRLEVSKQSFIPIP 185

Query: 200 KVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           KV S +I F P+    P     +  L  +T+ AF +RRK ++ SL  L     + + G++
Sbjct: 186 KVESMIIQFTPYHAHFPYPIVDIRLLSFLTKIAFHQRRKIIKNSLSSLFNTKEMQKCGLD 245

Query: 257 TNLRAENLSIEDFCRITNILTDNQ 280
           T LR+ENL+I+ FC +  IL +  
Sbjct: 246 TTLRSENLTIQQFCMLAEILHNKC 269


>gi|225159370|ref|ZP_03725666.1| ribosomal RNA adenine methylase transferase [Opitutaceae bacterium
           TAV2]
 gi|224802031|gb|EEG20307.1| ribosomal RNA adenine methylase transferase [Opitutaceae bacterium
           TAV2]
          Length = 285

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 23/287 (8%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M     + + +L+     PK+++GQNFL+D NI++K  E +    G TV+E+G G G LT
Sbjct: 1   MPLSPSATRELLARLGHTPKRFLGQNFLVDGNIVRKSLELAAVSAGDTVVEVGPGLGTLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKF--------- 112
           + LL  GA  V  +EKD   +  L   ++ + P  L +++ DA++               
Sbjct: 61  RALLIAGAN-VWAVEKDAALYAHLAATLAPEFPGTLHLMEGDAVEFPLAGLKPAAAAATG 119

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
               S  +I+ANLPY I T     W+ A    P    + L+ Q E  +R  AQ  S  +G
Sbjct: 120 TGSGSDFKIVANLPYAISTP----WMDAVLSGPLPLRMVLMLQLEAAQRYVAQPGSKLFG 175

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232
            +S+L     +      +S   F P P V S ++H +    P     E+ K + +  F +
Sbjct: 176 GISILLQSAFEVAPGHRVSGACFHPRPDVDSCLLHLVRRAQPYVFRAET-KALIRACFQQ 234

Query: 233 RRKTLRQSLKRLGGEN---LLHQA----GIETNLRAENLSIEDFCRI 272
           RRK +R  L+    ++    L       G+  N R E + +  +  +
Sbjct: 235 RRKQIRPLLRGRLPDDGRAWLATLEATTGLGGNARPEEIPVPAWQAL 281


>gi|169628224|ref|YP_001701873.1| dimethyladenosine transferase [Mycobacterium abscessus ATCC 19977]
 gi|169240191|emb|CAM61219.1| Probable dimethyladenosine transferase (16S rRNA dimethylase)
           [Mycobacterium abscessus]
          Length = 301

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 125/279 (44%), Gaps = 19/279 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +       P K +GQNF+ D N +++I  +SG   G  VIE+G G G+LT  LL
Sbjct: 22  RTEIRQLAKDLDFRPTKTLGQNFVHDANTIRRIVSASGVGKGDHVIEVGPGLGSLTLGLL 81

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKFFNISSPIRII 122
             GA  V  +E D      L     +H     NR  +I  D L +          P  ++
Sbjct: 82  DKGA-AVTAVEVDPVLARRLPTTIKEHSHSEFNRFSVIHQDVLNLTPADI--QGEPTAMV 138

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+    L   ++        +++ ++ Q EV +R+TA+  S  YG  SV   +  
Sbjct: 139 ANLPYNVAVPALLRILTE---FDSVKTILVMVQSEVADRLTAEPGSRIYGVPSVKVRYFG 195

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCL-ESLKKITQEAFGKRRKTLR 238
           K   +  +SP VF+P P+V S ++    H +   P      + L  +   +F +RRKT R
Sbjct: 196 KVKRLGTVSPAVFWPIPRVYSGLVRIDRHADAAWPSDAGFRKELFDLIDISFAQRRKTSR 255

Query: 239 QSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
            +     G        L  A I+   R E L + DF R+
Sbjct: 256 NAFAEWAGSGDESARRLLAASIDPARRGETLDVADFARL 294


>gi|189192010|ref|XP_001932344.1| dimethyladenosine transferase dimethyltransferase [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187973950|gb|EDU41449.1| dimethyladenosine transferase dimethyltransferase [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 380

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 14/248 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           +  S K   +H      K +GQ+ L +  +   I + +       V+E+G G GNLT ++
Sbjct: 21  RPTSAKASAAHSIFKMDKDLGQHILKNPGVATAIVQKAHLKQSDHVLEVGPGTGNLTVLI 80

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A++V  +E D +    L       P   RL I   D +K +  +F         I+
Sbjct: 81  LK-AAKQVTAVEMDPRMAAELTKRVQGSPEEKRLTIRLGDVIKAELPRF------DVCIS 133

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N PY I + L+F  ++    P       L+FQ+E   R+ A+     Y RLSV     +K
Sbjct: 134 NTPYQISSPLVFKLLALQHPP---RCCILMFQREFAMRLFARPGEKLYSRLSVNVQMWSK 190

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            + +  +  + F P P+V S V+   P         E    + +  F ++ +TLR S   
Sbjct: 191 VSHVMKVGRNNFNPPPQVESNVVRIEPKNPRPQIAYEEWDGLLRICFVRKNRTLRASF-- 248

Query: 244 LGGENLLH 251
           LG   +L 
Sbjct: 249 LGTAAVLE 256


>gi|296123743|ref|YP_003631521.1| dimethyladenosine transferase [Planctomyces limnophilus DSM 3776]
 gi|296016083|gb|ADG69322.1| dimethyladenosine transferase [Planctomyces limnophilus DSM 3776]
          Length = 314

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 125/289 (43%), Gaps = 26/289 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L  +    +I P+  +GQNFL+D+N+++ +A  +       V+E+G G G LT  L    
Sbjct: 12  LTELFHKLRINPRGDLGQNFLIDINLVELVAREAQLSKDDVVLEVGTGTGGLTIFLAAE- 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------------VDFEKFFNISS 117
           A +V+ IE D     I     +   N ++ +  DALK            V+        S
Sbjct: 71  AGEVVSIEYDPNMHAIATKQHAGLSN-VQWVNTDALKNKNQLHPLLVESVNTALARRPGS 129

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            ++++ANLPYNI T ++ + I    WP  W  + +  Q E+  R+ A   S  Y  LS+ 
Sbjct: 130 TLKLVANLPYNIATPVI-SMIVGSEWP--WSRMVVTVQWEMAVRMQATPGSSDYSGLSIW 186

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRK 235
              +    ++  + P VF+P PK+ S V+     P         E      +  F  RRK
Sbjct: 187 LQSQCDIEILRKLPPDVFWPRPKIDSAVVLVTPAPARRDRIADPEFFHNYLRAIFMHRRK 246

Query: 236 TLRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            LR  L            + LL QAGI    RAE L  E    + N+L 
Sbjct: 247 LLRGVLCSTYSQVAKPRIDELLQQAGITPQARAEELPTEIHVALANLLY 295


>gi|254456784|ref|ZP_05070212.1| dimethyladenosine transferase [Campylobacterales bacterium GD 1]
 gi|207085576|gb|EDZ62860.1| dimethyladenosine transferase [Campylobacterales bacterium GD 1]
          Length = 258

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 18/269 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++   ++ KK  GQNFL D  +L+KI E+        V+EIG G G+LT+ L  +  + V
Sbjct: 1   MNKNSVVAKKKFGQNFLKDEAVLRKIIEAM-PKSDNKVVEIGPGLGDLTKYL--VDVKSV 57

Query: 74  IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
              E D     +L+    +     RL I   D L+       +   P  ++ANLPY I T
Sbjct: 58  EAFEVDTDLCKLLQSTFKEEIATKRLHINCGDVLQAWQSSLID--EPYDLVANLPYYIAT 115

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   ++     P  +++ ++ Q EV E+  A +    +G LSV+T    +A ++  + 
Sbjct: 116 NIILKALAD----PMCKNILVMVQLEVAEKFCAHEGEKVFGSLSVITQSVGEAHIVMQVP 171

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           P  F P PK+ S V     + +      E  + + + AF + RKTL ++L     +++L 
Sbjct: 172 PTAFEPPPKIDSAVFLIRKNADR---SDEDFEGLLRVAFKQPRKTLMKNLSANYEKSILQ 228

Query: 252 ----QAGIETNLRAENLSIEDFCRITNIL 276
               +  +   +R   +S +D+ ++   +
Sbjct: 229 EVFNELSLALTIRPHQVSTQDYHQLYKKI 257


>gi|225431251|ref|XP_002267827.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 383

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 105/223 (47%), Gaps = 12/223 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   S      TV+EIG G GNLT  LL   A++V+ +E D + 
Sbjct: 50  KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLL-QAAQRVVAVELDARM 108

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL+   ++H   ++L +I  DALK DF +F        ++AN+PY I + L+   +  
Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 + S TLL QKE   R+ A      + RL+V      +   + D+S   F P PK
Sbjct: 163 ANP---FRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           V S+V+   P        L      T+  F K+ KTL  + K 
Sbjct: 220 VDSSVVTIRPKAEVPDVDLNEWCAFTRTCFSKKNKTLGATFKH 262


>gi|308234122|ref|ZP_07664859.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829]
 gi|328943654|ref|ZP_08241119.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829]
 gi|327491623|gb|EGF23397.1| dimethyladenosine transferase [Atopobium vaginae DSM 15829]
          Length = 315

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 22/283 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            +LS + +  K  +GQNFL++ +++  I E +       V+EIG G G L+  LL    +
Sbjct: 14  DVLSSFGLYTKHRLGQNFLIEDSVIGHILELAHVQADDYVVEIGPGIGTLSCALLPR-VK 72

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRII 122
           ++  IE D+    +L +   ++ ++ E+I  DALKV  ++             +  +++I
Sbjct: 73  RLCAIEADRVLPDVLAETLGEYADKFELISADALKVSADEIRAKLFSADRDGNACSVKLI 132

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPY I    +  ++      P    L ++ Q EV +R+ AQ     YG  S       
Sbjct: 133 ANLPYQIAATAVLRYLE---MLPELNELIVMVQSEVAQRMAAQPAHKLYGAYSAKLALYA 189

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC----LESLKKITQEAFGKRRKTLR 238
           +    F ++P  FFP+P V S VIH          C       + ++   AF +RRKTL 
Sbjct: 190 ECVGGFKVAPSNFFPAPHVMSEVIHIQRRSADKQLCKAYERAYVARVIDAAFSQRRKTLL 249

Query: 239 QSLKRLGGE--NLLHQAG---IETNLRAENLSIEDFCRITNIL 276
             L   G +  ++L       I+ + R E L+   F  +   L
Sbjct: 250 NCLCACGFDKQDVLTACDTIQIDVHERGEKLTPSQFVELARAL 292


>gi|19074123|ref|NP_584729.1| DIMETHYLADENOSINE TRANSFERASE [Encephalitozoon cuniculi GB-M1]
 gi|19068765|emb|CAD25233.1| DIMETHYLADENOSINE TRANSFERASE [Encephalitozoon cuniculi GB-M1]
          Length = 277

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 15/227 (6%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
              K  GQ+ L +L ++  I E +      TV+E+G G GNLT  LL   A+KV+  E D
Sbjct: 5   KFNKQHGQHILKNLGVIDTIIERARIKPTDTVLEVGGGTGNLTMKLL-QKAKKVVCYEID 63

Query: 80  QQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            +    L    +  P    + ++   DALK DF  F         I NLPY I +  +F 
Sbjct: 64  PRLAAELAKKVNGTPGMAQKFQLFVGDALKHDFPHF------DLCITNLPYQISSPFVFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +  D     ++   ++FQKE  +R+ A+  SP Y RLSV      +   +  +S + F 
Sbjct: 118 LLKYD-----FKCAFIMFQKEFSDRLVARPGSPEYCRLSVGAQILAQIDHVLKVSKNSFV 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           P PKV S+ +   P +   P  L    +  +  F ++ KTLR + K 
Sbjct: 173 PPPKVESSFVRIEPRIPRPPIDLGEFDRFLKICFLRKNKTLRANFKN 219


>gi|88608711|ref|YP_506251.1| dimethyladenosine transferase [Neorickettsia sennetsu str.
           Miyayama]
 gi|119365038|sp|Q2GE45|RSMA_NEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|88600880|gb|ABD46348.1| dimethyladenosine transferase [Neorickettsia sennetsu str.
           Miyayama]
          Length = 262

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 97/258 (37%), Positives = 140/258 (54%), Gaps = 12/258 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K +GQ+F+ D  +L KI +++ S+ G  + EIGAG G L+  +L      +I +EKD++
Sbjct: 5   NKLLGQHFIYDREVLDKIIDAATSVKGKHIFEIGAGSGTLSAAILLREPASLISVEKDKR 64

Query: 82  FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           F   L  + +Q+ N +  I   DAL +     F     + IIANLPYNI T LL  W++ 
Sbjct: 65  FSESLSSLMAQYQNYKYTI--GDALLIRLSSLFKQ-EKVTIIANLPYNIATHLLLGWMNE 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    + L+FQKEV +RI AQ  S +YG LSVL     KA   F ++P VF P P+
Sbjct: 122 LEQ---VREMVLMFQKEVADRICAQPKSKNYGALSVLVQLECKAESQFALAPEVFTPPPR 178

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGI 255
           VTSTV+   P  N  P     L+KI  E F +RRK +++SL R+  +     + L Q G 
Sbjct: 179 VTSTVLKLTPLKNKWPRNKPVLEKILTEGFSQRRKMIKKSLSRIFKDSEALHSALAQVGA 238

Query: 256 ETNLRAENLSIEDFCRIT 273
              +R E L+ E  CR++
Sbjct: 239 SPTMRIEELNPEQLCRLS 256


>gi|313125978|ref|YP_004036248.1| dimethyladenosine transferase [Halogeometricum borinquense DSM
           11551]
 gi|312292343|gb|ADQ66803.1| dimethyladenosine transferase [Halogeometricum borinquense DSM
           11551]
          Length = 289

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 25/290 (8%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGN 60
           T  +       ++    +       Q+FL+D  +L +I        D   V+E+G G G 
Sbjct: 11  TAAHPPRDPDRLIRRAGLRGDPDQDQHFLVDDRVLDRIPSYLPEDTDTSHVLEVGGGTGA 70

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSP 118
           LT  LL + A +V V+E+D +    L++  +     +RL I++ DAL++D  +F      
Sbjct: 71  LTDRLLRV-ADRVTVVERDTRLAEFLREEFADAIEADRLTILEGDALEIDLPEF------ 123

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
              ++NLPY I + + F  +      P    L L+FQKE GER+ A+  +  YGRLSV  
Sbjct: 124 TACVSNLPYGISSEITFRLL------PRGVPLVLMFQKEFGERMAAETGTDEYGRLSVSA 177

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTL 237
                  ++  +    F P+P V S V+   P         E+      +  F +RRKT+
Sbjct: 178 QHYGDVEVVETVPKEAFDPAPAVESVVVRVTPRAPDYEVDDEAFFLDFVKALFTQRRKTI 237

Query: 238 RQSLKRLG-------GENLLHQAGIE-TNLRAENLSIEDFCRITNILTDN 279
           R  ++           E ++  A  +    RA N+S E F  +T +  ++
Sbjct: 238 RNGIRNTAHISGLEDPEAVVEAADEDVLRKRAGNMSPEAFAALTALADEH 287


>gi|241950377|ref|XP_002417911.1| 18S rRNA dimethylase, putative; S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase, putative;
           dimethyladenosine transferase, putative [Candida
           dubliniensis CD36]
 gi|223641249|emb|CAX45629.1| 18S rRNA dimethylase, putative [Candida dubliniensis CD36]
          Length = 330

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI +E 
Sbjct: 30  FKFNTNLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-KARKVIAVEM 88

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K D   F         I+N PY I + L+F 
Sbjct: 89  DPRMAAELTKRVHGTPQEKKLEILLGDFMKTDLPYF------DICISNTPYQISSPLVFK 142

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E  +R+ A+     Y RLS         T +  +  + F 
Sbjct: 143 LLNQPRPP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFR 199

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+                  + +  F ++ KT+    K     ++L +
Sbjct: 200 PPPQVESSVVRIEVKNPRPNIDFNEWDGLLRIVFVRKNKTIAAGFKSSNVIDILEK 255


>gi|330912552|ref|XP_003295983.1| hypothetical protein PTT_04321 [Pyrenophora teres f. teres 0-1]
 gi|311332221|gb|EFQ95920.1| hypothetical protein PTT_04321 [Pyrenophora teres f. teres 0-1]
          Length = 380

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 14/248 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           +  S K   +H      K +GQ+ L +  +   I + +       V+E+G G GNLT ++
Sbjct: 21  RPTSAKASAAHSIFKMDKDLGQHILKNPGVATAIVQKAHLKQSDHVLEVGPGTGNLTVLI 80

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A++V  +E D +    L       P   RL I   D +K +  +F         I+
Sbjct: 81  LK-AAKQVTAVEMDPRMAAELTKRVQGSPEEKRLTIRLGDVIKAELPRF------DVCIS 133

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N PY I + L+F  ++    P       L+FQ+E   R+ A+     Y RLSV     +K
Sbjct: 134 NTPYQISSPLVFKLLALQHPP---RCCILMFQREFAMRLFARPGEKLYSRLSVNVQMWSK 190

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            + +  +  + F P P+V S V+   P         E    + +  F ++ +TLR S   
Sbjct: 191 VSHVMKVGRNNFNPPPQVESNVVRIEPKNPRPQIAYEEWDGLLRICFVRKNRTLRASF-- 248

Query: 244 LGGENLLH 251
           LG   +L 
Sbjct: 249 LGTAAVLE 256


>gi|254796737|ref|YP_003081573.1| dimethyladenosine transferase [Neorickettsia risticii str.
           Illinois]
 gi|254589984|gb|ACT69346.1| dimethyladenosine transferase [Neorickettsia risticii str.
           Illinois]
          Length = 262

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 93/258 (36%), Positives = 136/258 (52%), Gaps = 12/258 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K +GQ+F+ D  +L KI ++  S+ G  + EIGAG G L+  +L      ++ +EKD++
Sbjct: 5   NKLLGQHFIYDREVLDKIIDTVTSVKGKHIFEIGAGSGTLSAAILLREPASLMSVEKDKR 64

Query: 82  FFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           F   L  + +Q+ N +  I   DAL +     +     + IIANLPYNI T LL  W++ 
Sbjct: 65  FSESLSSLMAQYQNYKYTI--GDALLIRLSSLYKQ-EKVTIIANLPYNIATHLLLGWMNE 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                    + L+FQKEV +RI AQ  S  YG LSVL     K    F ++P VF P PK
Sbjct: 122 LEH---IREMVLMFQKEVADRICAQPKSKSYGTLSVLVQLECKVESQFTLAPEVFTPPPK 178

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGI 255
           VTSTV+   P     P     L+KI  E F +RRK +++SL R+  ++      L  AG 
Sbjct: 179 VTSTVLKLTPLEKKWPRNKPVLEKILTEGFSQRRKMIKKSLSRVFKDSEALHFALAHAGA 238

Query: 256 ETNLRAENLSIEDFCRIT 273
              +R E L+ E  C+++
Sbjct: 239 SPTMRIEELNPEQLCKLS 256


>gi|218962077|ref|YP_001741852.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730734|emb|CAO81646.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 267

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 132/266 (49%), Gaps = 13/266 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +   K +GQNFL D +I +KI          +V EIG G G LT  ++     ++   E 
Sbjct: 8   MKALKALGQNFLTDKSIAEKIVALGELQPEDSVWEIGPGTGILTDEIIKNNV-QLRAFEL 66

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNW 137
           D++ +  L   S+++ NR+ + Q D L+VD+        +P+++IAN+PY I + LL   
Sbjct: 67  DRRLYKYL---SARYENRIILEQTDILQVDWNSLIRKDGTPLKLIANIPYQITSPLLALL 123

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
              + +  F+  + L+ QKEV ER++A+  + +Y  L++        +    +S   F P
Sbjct: 124 ---EEYSRFFSRIVLMVQKEVAERLSAKPGNKNYAPLTIRLRLVFDISSKIQVSREKFSP 180

Query: 198 SPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA--- 253
            PKV S VI  +P  N P+    E   K+   AF  RRKTL  +L  + G+    +    
Sbjct: 181 MPKVDSAVILLLPRENKPVIKHPEHFHKLLHAAFVHRRKTLANNLIPVLGKEKTEELAKL 240

Query: 254 -GIETNLRAENLSIEDFCRITNILTD 278
             I+   R E L+ EDF  +++ L D
Sbjct: 241 SHIDFGKRGEELAEEDFILLSDCLAD 266


>gi|50420303|ref|XP_458685.1| DEHA2D05038p [Debaryomyces hansenii CBS767]
 gi|52782772|sp|Q6BSY5|DIM1_DEBHA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49654352|emb|CAG86824.1| DEHA2D05038p [Debaryomyces hansenii]
          Length = 327

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 100/236 (42%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +G      V+E+G G GNLT  +L   ARKVI  E 
Sbjct: 30  FKFNTNLGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILEQ-ARKVIASEM 88

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       PN  +L+I+  D +K +   F         I+N PY I + L+F 
Sbjct: 89  DPRMAAELTKRVHGTPNQKKLDILLGDFIKTELPYF------DVCISNTPYQISSPLVFK 142

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E   R+ A+     Y RLS         T +  +S + F 
Sbjct: 143 LLNQPRPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVSKNNFR 199

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+     +            + +  F ++ KT+    K     ++L +
Sbjct: 200 PPPQVESSVVRIEVKVPRPNIDFNEWDGLLRICFVRKNKTIAAGFKSNNILDILEK 255


>gi|317506076|ref|ZP_07963904.1| dimethyladenosine transferase [Segniliparus rugosus ATCC BAA-974]
 gi|316255648|gb|EFV14890.1| dimethyladenosine transferase [Segniliparus rugosus ATCC BAA-974]
          Length = 296

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 17/275 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ +     + P K +GQNF+ D   +++I  ++G     +V+EIG G G+LT  LL + 
Sbjct: 26  VRALAGQLDVRPTKRLGQNFVHDPGTIRRIVAAAGLRPEDSVLEIGPGLGSLTLGLLDV- 84

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           A  V  +E D +    L + I+ + P R   ++  DAL++D       ++P  ++ANLPY
Sbjct: 85  AHDVTAVEVDPKLAEALPRTIAERAPGRQFRLVVKDALQLDAADL--PTAPTALVANLPY 142

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           N+   +    ++     P      ++ Q EVG+R+ A+  +   G  ++ T +  +A + 
Sbjct: 143 NVAVPVFLRALAE---FPSIRRALVMVQLEVGQRLAAKPGAREGGVPTLKTAFYGEAELT 199

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCL---ESLKKITQEAFGKRRKTLRQSLKR 243
             +SP VF+P P V S ++ F    + P P      +++ ++   AF  RRKTL   LK 
Sbjct: 200 NKVSPEVFWPRPNVDSALVRFTRREDSPWPTDEQTRQAVFRLIDAAFASRRKTLGAVLKP 259

Query: 244 LGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
             G        L  AG+  + R E L IE F  + 
Sbjct: 260 WAGSPEELRRRLEAAGVPGSARGEELGIEQFVALA 294


>gi|57640834|ref|YP_183312.1| dimethyladenosine transferase [Thermococcus kodakarensis KOD1]
 gi|62900463|sp|Q5JI54|RSMA_PYRKO RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|57159158|dbj|BAD85088.1| dimethyladenosine transferase [Thermococcus kodakarensis KOD1]
          Length = 279

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 135/277 (48%), Gaps = 27/277 (9%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +I+  Y + P + +GQNFL+  +I+++  E +   +  TV+EIG G G LT  L    A 
Sbjct: 7   SIIYKYNLHPNRDLGQNFLIVPDIIERNIERAEVGEKDTVLEIGPGLGVLTDPLSKR-AG 65

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV  IEKD +   IL+     +   +EII+ DALKV++ +F       ++++NLPY I +
Sbjct: 66  KVYAIEKDCRIVEILRR--EYNWPNVEIIEGDALKVEWPEF------NKMVSNLPYQISS 117

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            + F  +S +     +E   L+FQ E  ER+ A+    +Y RLS++   + +A ++  I 
Sbjct: 118 PVTFKLLSRE-----FERAVLIFQLEFAERMVAKPGDKNYSRLSLMVRAKARAELVERIG 172

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----G 246
              F+P PKV S V+   P   P    ++  + + +  F  RR T+  +LK+        
Sbjct: 173 KGAFWPRPKVDSAVVVLEPK--PPEERIDLNENLVKALFQHRRSTVSAALKKSAHMLGLS 230

Query: 247 ENLLHQAG------IETNLRAENLSIEDFCRITNILT 277
           ++   +          +  R   LS ED   I   L 
Sbjct: 231 KDKARELRQVFSRVPHSERRVFQLSPEDVLEIEEFLK 267


>gi|303312255|ref|XP_003066139.1| dimethyladenosine transferase, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240105801|gb|EER23994.1| dimethyladenosine transferase, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320040136|gb|EFW22070.1| dimethyladenosine transferase [Coccidioides posadasii str.
           Silveira]
          Length = 379

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 14/237 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+KVI +E 
Sbjct: 32  FRMNTDIGQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVIAVEL 90

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   RLE++  D +K D   F         I+N PY I + L F 
Sbjct: 91  DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFK 144

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F 
Sbjct: 145 LLATTPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFK 201

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           P P V S+V+  +P         +    + + AF ++ KTLR S   LG  ++L   
Sbjct: 202 PPPAVESSVVRIVPKTPRPDISYDEWDGLLRIAFVRKNKTLRSSF--LGTSSVLSML 256


>gi|225563099|gb|EEH11378.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces
           capsulatus G186AR]
 gi|240279925|gb|EER43430.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces
           capsulatus H143]
          Length = 384

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 114/256 (44%), Gaps = 20/256 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +      TV+EIG G GNLT  +L   A+KVI +E 
Sbjct: 32  FRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVEL 90

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   RLE++  D +K D   F         I+N PY I + L F 
Sbjct: 91  DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFK 144

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++ +  P       L+FQ+E   R+ A+     Y RLSV      +   +  +  + F 
Sbjct: 145 LLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFK 201

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P V S+V+  +P         +    + + AF ++ KT+R S   LG  ++L    +E
Sbjct: 202 PPPAVESSVVRIVPKNPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLD--MLE 257

Query: 257 TNLRA----ENLSIED 268
           +N R      N+ +ED
Sbjct: 258 SNYRTWCAQNNIPVED 273


>gi|317027289|ref|XP_001400595.2| dimethyladenosine transferase [Aspergillus niger CBS 513.88]
          Length = 387

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 12/246 (4%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + ++I + +       V+EIG G GNLT  +L   A+KVI +E D +   
Sbjct: 38  LGQHILKNPGVAQRIVDKAELKQSDVVLEIGPGTGNLTVKILEQ-AKKVIAVELDPRMAA 96

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            +       P   RL++I  D +K D   F         I+N PY I + L F  ++   
Sbjct: 97  EVTKRVQGTPAQKRLDVILGDVIKTDLPYF------DVCISNTPYQISSPLTFKLLATSP 150

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 151 AP---RICVLMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPLVE 207

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S+V+  +P         +    + +  F ++ KT+R S         + +A   T     
Sbjct: 208 SSVVRLVPKNPRPQINYDEWDGLLRILFVRKNKTIRSSFLGKSTVMDMLEANYRTWCAQN 267

Query: 263 NLSIED 268
           ++ +ED
Sbjct: 268 DIPVED 273


>gi|224001108|ref|XP_002290226.1| dimethyladenosine transferase [Thalassiosira pseudonana CCMP1335]
 gi|220973648|gb|EED91978.1| dimethyladenosine transferase [Thalassiosira pseudonana CCMP1335]
          Length = 335

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I P   +GQ+FL +  ++  I   +G     +++EIG G GN+T  LL   ++ V+ IE 
Sbjct: 49  IAPNTSLGQHFLKNPAVVTAIVAKAGLKPTDSILEIGPGTGNMTVPLLQQ-SKSVVAIEY 107

Query: 79  DQQFF-PILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +LK +      R L++IQ DA+K  F  FF++      +AN+PY I + L+F 
Sbjct: 108 DTRMVREVLKRVEGTSEERKLKVIQGDAIKTRFP-FFDVC-----VANVPYQISSALVFK 161

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S     P +    ++FQ+E   R+TA+     Y RLSV T    K   +  +  + F 
Sbjct: 162 LLSHR---PMFRCAVMMFQEEFALRLTARPGEALYCRLSVNTQLLAKVDQLMKVGRNNFR 218

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P PKV S V+       P P        + +  F ++ KTLR  L       +L +
Sbjct: 219 PPPKVESRVVRIELRNPPPPVNFTEWDGMIRLLFNRKNKTLRSVLMTKPTIKMLDE 274


>gi|253745520|gb|EET01398.1| Dimethyladenosine transferase [Giardia intestinalis ATCC 50581]
          Length = 319

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 109/252 (43%), Gaps = 14/252 (5%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
                 K  GQ+ L +  ++K I E +      TV+EIG G GNLT  LL   A+ VI I
Sbjct: 2   QGFELTKQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KAKHVIAI 60

Query: 77  EKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           E D +    LK   +  P    +  II  D  K+   +          ++N PYNI + +
Sbjct: 61  EIDPRMVSELKKRIAAIPEYRGKFTIIHKDFTKMPATEIPTFD---LCVSNCPYNISSGI 117

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F  +     P  +    L+FQ E  +R+ A+     Y RL+V T   +K  ++  +S +
Sbjct: 118 VFRLLEIQPLPRKF---VLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRN 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P P V S V+   P   P    L+    +T+  F K+ KTL    K     + L   
Sbjct: 175 SFKPPPNVDSAVVEMYPIGPPPGLDLDEFNGLTRILFSKKNKTLGAIFKTKSLLDDLANN 234

Query: 254 GIETNLRAENLS 265
            +    R E +S
Sbjct: 235 MV----RLEEIS 242


>gi|82753583|ref|XP_727737.1| dimethyladenosine transferase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483724|gb|EAA19302.1| dimethyladenosine transferase, putative [Plasmodium yoelii yoelii]
          Length = 394

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 110/231 (47%), Gaps = 11/231 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI  ++       V+EIG G GNLT  LL L A+KVI I+ D + 
Sbjct: 48  KKHGQHLLKNPGILDKIIMAAKIKSSDIVLEIGCGTGNLTIKLLPL-AKKVITIDIDARM 106

Query: 83  FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +K     +  N LE+ + DA+K  F KF          AN+PY I + L+F  I+  
Sbjct: 107 ISEVKKRCLYEGYNNLEVYEGDAIKTIFPKF------DVCTANIPYKISSPLIFKLIAHR 160

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P ++   L+FQKE  ER+ A     +Y RL+V      +   + ++    F P PKV
Sbjct: 161 ---PLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCRVIKVCNVDRSSFNPPPKV 217

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S V+  IP  N      +    + +  F ++RKTL    KR    N+L  
Sbjct: 218 DSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 268


>gi|325093055|gb|EGC46365.1| dimethyladenosine transferase dimethyltransferase [Ajellomyces
           capsulatus H88]
          Length = 384

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 20/256 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +      TV+EIG G GNLT  +L   A+KVI +E 
Sbjct: 32  FRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVEL 90

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   RLE++  D +K D   F         I+N PY I + L F 
Sbjct: 91  DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFK 144

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++ +  P       L+FQ+E   R+ A+     Y RLSV      +   +  +  + F 
Sbjct: 145 LLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWARIDHIMKVGKNNFK 201

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P V S+V+  +P         +    + + AF ++ KT+R S   LG  ++L+   +E
Sbjct: 202 PPPAVESSVVRIVPKNPRPQISYDEWDGLLRVAFVRKNKTMRSSF--LGTTSVLN--MLE 257

Query: 257 TNLRA----ENLSIED 268
           +N R      N+ +ED
Sbjct: 258 SNYRTWCAQNNIPVED 273


>gi|149239484|ref|XP_001525618.1| dimethyladenosine transferase [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451111|gb|EDK45367.1| dimethyladenosine transferase [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 329

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI  E 
Sbjct: 30  FKFNTNLGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILEQ-ARKVIASEM 88

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K +   F         I+N PY I + L+F 
Sbjct: 89  DPRMAAELTKRVHGTPQEKKLEILLGDFMKTELPYF------DICISNTPYQISSPLVFK 142

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 143 LLNQPNPP---RVSILMFQREFAMRLVARPGDELYCRLSANVQMWANVTHIMKVGKNNFR 199

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P PKV S+V+                  + +  F ++ KT+    K L   ++L +
Sbjct: 200 PPPKVESSVVRIEIKNPRPNIDFNEWDGLLRIVFVRKNKTIAAGFKSLNVIDILEK 255


>gi|255948106|ref|XP_002564820.1| Pc22g08040 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591837|emb|CAP98092.1| Pc22g08040 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 386

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 109/260 (41%), Gaps = 12/260 (4%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT  +H        +GQ+ L +  I   I E +       V+EIG G GNLT  +L   A
Sbjct: 23  KTKAAHSIFKMNTDIGQHVLKNPGIAAAIVEKAELKQSDVVLEIGPGTGNLTAKILE-KA 81

Query: 71  RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +K I +E D +    +       P   RLE+I  D +K +   F         I+N PY 
Sbjct: 82  KKCIAVELDPRMAAEVTKRFQSTPYQKRLEVILGDVMKTELPYF------DVCISNTPYQ 135

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L F  ++    P    S  L+FQ+E   R+ A+     Y RLSV      K   + 
Sbjct: 136 ISSPLTFKLLATSPAP---RSCILMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIM 192

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            +  + F P P+V S+VI  +P         E    + +  F ++ KTLR S        
Sbjct: 193 KVGKNNFKPPPQVESSVIRMVPKNPRPQVNYEEWDGLLRIVFVRKNKTLRSSFIGTSSIM 252

Query: 249 LLHQAGIETNLRAENLSIED 268
            L +A   T     ++ +ED
Sbjct: 253 ELLEANYRTWCAQNDIPVED 272


>gi|294102068|ref|YP_003553926.1| dimethyladenosine transferase [Aminobacterium colombiense DSM
           12261]
 gi|293617048|gb|ADE57202.1| dimethyladenosine transferase [Aminobacterium colombiense DSM
           12261]
          Length = 276

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 7/268 (2%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +       K  +GQNFL D NIL +I + +   +   ++EIGAG G LT+ L      ++
Sbjct: 1   MKDQTFKHKSSLGQNFLTDRNILGQIVKWAAIDESDILLEIGAGQGVLTRELALSPCSRI 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D+     L  +  +   RL II DDA+  D+E     ++P +++AN+PYNI T L
Sbjct: 61  FALEIDKTLHTHLDPLEEEFRPRLSIIWDDAVTFDYETKL-PAAPTKVVANIPYNITTPL 119

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           ++  + A        S+ L+ Q+E   R+ A  N+     L +      +  ++  + P 
Sbjct: 120 IWRLLEAFA-GKGLHSMILMVQREAALRLNASPNTKDRYPLGITLEIMGERKILRKVPPQ 178

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE-----N 248
            F+P P V S VI      N      ++ + + + +F +RRKTL  S  R G       +
Sbjct: 179 AFYPQPAVDSAVIEIKVQRNFDLPRQKNWRTLLRASFAQRRKTLINSASRNGVSKNHLID 238

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNIL 276
                    +LRAENL+ + +  + ++L
Sbjct: 239 AFSALHFNPSLRAENLTGKQWLELWHML 266


>gi|283768668|ref|ZP_06341580.1| dimethyladenosine transferase [Bulleidia extructa W1219]
 gi|283105060|gb|EFC06432.1| dimethyladenosine transferase [Bulleidia extructa W1219]
          Length = 249

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 16/257 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D  I K++AE +       V+E+G G G+LT+ L  + A+KVI  E D     +L D  
Sbjct: 1   MDPVITKRVAEEAN--ADGMVLEVGPGIGSLTEQLAYV-AKKVIAYEIDLGLKKVLTDHF 57

Query: 91  SQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           +   N ++I   D LKVD     E +      + + ANLPY I + +LF   + +     
Sbjct: 58  ASFEN-VDIQFQDFLKVDLHEKVEDWKKQYGKVVVCANLPYYITSAVLFKVFAEEK---- 112

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            E++T++ QKEVG+R  A  N   Y  LSV      +   +F +    F PSPKV S +I
Sbjct: 113 IETITVMVQKEVGDRFHAMVNDHEYSALSVEGQSYYEVKKLFTVPGRSFNPSPKVDSVII 172

Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAE 262
            F           E+     +  FG+RRKT+R +L++       +  L +  I+   R +
Sbjct: 173 QFQRKEVTPSFDREAYFGFIRNCFGQRRKTIRNNLQKNFSNEEIDKALQKCEIDPGQRPQ 232

Query: 263 NLSIEDFCRITNILTDN 279
           +LS+  +  +  +L + 
Sbjct: 233 SLSVLQYQSLFEVLYER 249


>gi|292659595|pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
           Homocysteine And Methanocaldococcus Jannaschi Dim1.
 gi|292659596|pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
           Methanocaldococcus Jannaschi Dim1
 gi|292659597|pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
           Methanocaldococcus Jannaschi Dim1
 gi|292659598|pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
           Methionine And Methanocaldococcus Jannaschi Dim1
          Length = 295

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 129/278 (46%), Gaps = 28/278 (10%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           +   PKK +GQ FL+D N + K  ES+       V+EIG G G LT+ L    A+KV VI
Sbjct: 20  HMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVI 78

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D+   P   +   +  N +EII  DALKVD  K        +++ANLPY I + + F 
Sbjct: 79  EIDKSLEPY-ANKLKELYNNIEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFK 133

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I        ++   L++Q E  +R+ A   +  YGRLSV    R    ++  + P  F+
Sbjct: 134 LIKRG-----FDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFY 188

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL-------------- 241
           P PKV S ++   P+        E+      +  F  R K++R++L              
Sbjct: 189 PKPKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEM 248

Query: 242 KRLGGENLLHQAGIET--NLRAENLSIEDFCRITNILT 277
           K++  + L   + I+   N +   LS++D   ++N   
Sbjct: 249 KKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFY 286


>gi|297735070|emb|CBI17432.3| unnamed protein product [Vitis vinifera]
          Length = 383

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 105/223 (47%), Gaps = 12/223 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   S      TV+EIG G GNLT  LL   A++V+ +E D + 
Sbjct: 50  KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLL-QAAQRVVAVELDARM 108

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL+   ++H   ++L +I  DALK DF +F        ++AN+PY I + L+   +  
Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 + S TLL QKE   R+ A      + RL+V      +   + D+S   F P PK
Sbjct: 163 ANP---FRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           V S+V+   P        L      T+  F K+ KTL  + K 
Sbjct: 220 VDSSVVTIRPKAEVPDVDLNEWCAFTRTCFSKKNKTLGATFKH 262


>gi|328792787|ref|XP_001121333.2| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Apis
           mellifera]
          Length = 343

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 139/288 (48%), Gaps = 26/288 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S+K +L  Y++   K + QNF+L+ N+  KI + +G+L+   V+EIG GPG LT+ +
Sbjct: 8   PLPSIKDVLKIYRLRAMKELSQNFILNQNLADKIIKKTGNLNDCHVLEIGPGPGALTRSI 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFF--------- 113
           L    +K+IV+EKD++F P L+ ++        ++EII DD +K++    F         
Sbjct: 68  LKCQPKKLIVVEKDKRFEPTLEMLADAFETINGKMEIIFDDIMKINMSNLFPSTEIKAWT 127

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNS 168
                I++I NLP+N+ T L+   + A     D W      +TL FQKEV ER+ AQ   
Sbjct: 128 EKCPRIKLIGNLPFNVSTPLIIKLLHAISEKRDAWTFGKTRMTLTFQKEVAERLIAQPLD 187

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQ 227
               RLSV+    T   + F I    F P PKV   ++ F+P   P         +K+T+
Sbjct: 188 VQRCRLSVMAQAWTHPVLHFIIPGTAFIPKPKVDVGLVTFVPLTIPRTKHEFSIFEKVTR 247

Query: 228 EAFGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIE 267
             F  R+K   + ++ L            +   + +    R   L+IE
Sbjct: 248 HIFSFRQKYGIRGVETLFPLEYRTELAQMMYKLSDLNPQTRPVELTIE 295


>gi|219851214|ref|YP_002465646.1| dimethyladenosine transferase [Methanosphaerula palustris E1-9c]
 gi|219545473|gb|ACL15923.1| dimethyladenosine transferase [Methanosphaerula palustris E1-9c]
          Length = 262

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 125/268 (46%), Gaps = 24/268 (8%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D   + +I E +G  DG +V+EIG G G LT+ LL  GA  V  IE D+     L
Sbjct: 7   QHFLVDQRAIDRIIECAGV-DGKSVLEIGPGEGVLTRALLDAGA-TVSAIEVDRTLIAHL 64

Query: 87  KDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            D          L +I+ DA +  F  F        ++ANLPY+I + + F  +  D   
Sbjct: 65  TDRFVDEIRSGFLTLIEGDAARCPFPPF------EVMVANLPYSISSPITFRLLDTD--- 115

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             + S  L++Q+E   R+ A   +   GRLSV+          F +SP  F P P V S 
Sbjct: 116 --FSSAVLMYQREFAARMAAPVGTSGCGRLSVMVQTYALVEECFTLSPFSFNPPPAVDSM 173

Query: 205 VIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLK-RLGGENLLHQAGIET----- 257
           V+   P+    P    S+   + +  F +RRKT+R  LK  +G       AG+       
Sbjct: 174 VVRIRPYGPIFPITDRSVYAAVVRILFSQRRKTVRNGLKGGIGIYGKPAIAGVIEALPEE 233

Query: 258 --NLRAENLSIEDFCRITNILTDNQDIA 283
               R + L +ED+  I N++++   ++
Sbjct: 234 ILGARPQTLYLEDYATIANLVSERSGLS 261


>gi|91200585|emb|CAJ73634.1| similar to dimethyladenosine transferase KsgA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 310

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 133/290 (45%), Gaps = 28/290 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+ + +   ++  K  GQ+ L+D NIL  IA S+       V+EIG G G+LT+ L    
Sbjct: 14  LRKLFARKGVVLNKKYGQHILIDQNILSYIANSASLQKDDVVLEIGTGTGSLTRYLAEKA 73

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL------------KVDFEKFFNISS 117
              V  +E D + F +  +I   + N + II  D L            ++      N  +
Sbjct: 74  CH-VFTVEIDSKLFDLSSEILKFYKN-ITIINADILQSKHKLNAEIVTRISGWLATNNHT 131

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             ++++NLPYNI T ++ N + +D        + L+ QKE+ ER+TA   S  YG LSV+
Sbjct: 132 AFKVVSNLPYNISTPVIINLLESDLP---ISLMVLMLQKEITERLTAAPGSREYGILSVI 188

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP---CCLESLKKITQEAFGKRR 234
           T   ++  +M  + P VF+P P+V+S ++    H               KI    F  RR
Sbjct: 189 TQLFSEVELMKTLPPEVFWPRPEVSSAIVKMSVHRAKYANKITDYPFFIKIIYAIFTSRR 248

Query: 235 KTLRQSLKRLG--------GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           KTL  S+++L          + +L    +  N+R E L  E    +T  L
Sbjct: 249 KTLLNSIEKLKLPGVSRSELKRILAAMQLNENIRGEMLDPEQLIHLTESL 298


>gi|225453766|ref|XP_002270274.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089082|emb|CBI38785.3| unnamed protein product [Vitis vinifera]
          Length = 335

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 140/291 (48%), Gaps = 24/291 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +  H+    L+     P+K +GQ+++L+ +I +++A+++   DG  ++EIG G G+LT +
Sbjct: 47  DDYHATLDALNSKGRTPRKSLGQHYMLNSSINEQLADTADIRDGDVILEIGPGTGSLTNV 106

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------- 113
           LL  GA  V+ IEKD     ++++  +   +RL+++Q+D +K                  
Sbjct: 107 LLDAGA-TVLAIEKDAHMAALVRERFAVT-DRLKVLQEDFMKCHIHPHLFSLLESKKAKN 164

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYG 172
             S   ++++N+P+NI T ++   +        +  + LL Q E   R+  A   +  Y 
Sbjct: 165 KESRYAKVVSNIPFNISTDVVKILL---PMGDIFSEVVLLLQDETALRLVEASLRTQEYR 221

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEA 229
            +++   + +     F +    FFP P V + V+ F        P    ++S   +   A
Sbjct: 222 PINIFVNFYSDPEYKFKVPRTNFFPQPNVDAAVVVFKLKQAVDYPPVSSIKSFFSLVNSA 281

Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           F  +RK LR+SL+ +      E  L   G+    R E L+++DF R+ N++
Sbjct: 282 FNGKRKMLRRSLQHICTSIEIEEALRNVGLPATSRPEELTLDDFVRLHNLI 332


>gi|268529208|ref|XP_002629730.1| Hypothetical protein CBG00961 [Caenorhabditis briggsae]
 gi|187038646|emb|CAP22289.1| hypothetical protein CBG_00961 [Caenorhabditis briggsae AF16]
          Length = 308

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 114/278 (41%), Gaps = 42/278 (15%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I E S      TV+E+G G GNLT  +L + A+ VI  E D +    
Sbjct: 29  GQHILKNPGVVNAIVEKSALKSTDTVLEVGPGTGNLTVKMLEV-AKTVIACEIDPRMIAE 87

Query: 86  LKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           +K      P   +L++   D +K ++  FF++      +ANLPY I +  +   +     
Sbjct: 88  VKKRVMGTPLQTKLQVNGGDVMKQEWP-FFDVC-----VANLPYQISSPFVQKLLLHRPL 141

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P +     L+FQKE  +R+ A+     Y RLSV      K  M+  +    F P PKV S
Sbjct: 142 PRY---AVLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDS 198

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--------------------- 242
            V+   P   P P      + + +  F ++ KTL    +                     
Sbjct: 199 AVVRIAPKNPPPPVNFVEWEGLLRLCFMRKNKTLLAIFRLSNVIEVIEDNYRKVCSMKNK 258

Query: 243 --------RLGGENLLHQAGIETNLRAENLSIEDFCRI 272
                   +   E  L  +G   N RA  + +EDF  +
Sbjct: 259 PLPKDFNMKKLIEETLTASGYAEN-RARKMRVEDFLAL 295


>gi|290974683|ref|XP_002670074.1| predicted protein [Naegleria gruberi]
 gi|284083629|gb|EFC37330.1| predicted protein [Naegleria gruberi]
          Length = 318

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 141/303 (46%), Gaps = 47/303 (15%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y +   K + QNFLL+L++  KI    G +   TVIEIG GPG LT+ +L    +++IV+
Sbjct: 2   YGLQASKQLSQNFLLNLHVTDKIVRVCGDISNKTVIEIGPGPGCLTRSILQANPKRLIVV 61

Query: 77  EKDQQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFF--------------NISSPIRI 121
           EKD++F P L+++       ++ I+Q D LKVD  K                +  + +  
Sbjct: 62  EKDERFMPALQNLQQSVDDGKMHIVQGDILKVDQFKLVDHFLEKDEKVLKNSDELANVVF 121

Query: 122 IANLPYNIGTRLLFNWISADTWPPFW------ESLTLLFQKEVGERITAQKNSPHYGRLS 175
           I NLP+ I T LL NW+                 + L+FQKEVG R++A+ ++  +GRLS
Sbjct: 122 IGNLPFGIATPLLINWLKDCANGTGAFAFGKKIPMVLMFQKEVGLRMSAKNSTKEFGRLS 181

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFG 231
           V +        MF ++   F P+PKV ++V+  IP   P+        E L++  +  F 
Sbjct: 182 VSSQSVCDVEHMFVVNAKSFVPAPKVDASVMRLIPKTTPLIDNSLVQFEDLEQFCRIIFN 241

Query: 232 KRRKTLRQSLKRLGGENL---------------LHQAGIETNLRAENLSIED-------F 269
            +RK L  +L                       +       + R+++L++E+       F
Sbjct: 242 GKRKQLNTNLSSYFSPKQCAYIAAGAVEGGSKNMDSVNAVLSQRSQDLTVEEITSMARRF 301

Query: 270 CRI 272
            R+
Sbjct: 302 VRL 304


>gi|254568850|ref|XP_002491535.1| Essential 18S rRNA dimethylase (dimethyladenosine transferase)
           [Pichia pastoris GS115]
 gi|238031332|emb|CAY69255.1| Essential 18S rRNA dimethylase (dimethyladenosine transferase)
           [Pichia pastoris GS115]
 gi|328351956|emb|CCA38355.1| dimethyladenosine transferase [Pichia pastoris CBS 7435]
          Length = 328

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   ARKVI  E 
Sbjct: 33  FKFNTQLGQHILKNPLVAQGIVDKANIRPSDTVLEVGPGTGNLTMRIL-QKARKVIASEM 91

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +L+II  D +K D   F         I+N PY I + L+F 
Sbjct: 92  DPRMAAELTKRVQGKPEQKKLDIILGDFIKQDLPYF------DICISNTPYQISSPLVFK 145

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E   R+ A+     Y RLSV        T +  +  + F 
Sbjct: 146 LLNQPKPP---RVAILMFQREFALRLLARPGDSLYCRLSVNVQMWANVTHIMKVGRNNFR 202

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+                  + +  F ++ +T+    K      +L +
Sbjct: 203 PPPQVESSVVRIEVKNPRPNIDFNEWDGLLRICFVRKNRTISAGFKNKSVIEILEK 258


>gi|258574477|ref|XP_002541420.1| dimethyladenosine transferase [Uncinocarpus reesii 1704]
 gi|237901686|gb|EEP76087.1| dimethyladenosine transferase [Uncinocarpus reesii 1704]
          Length = 349

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 14/237 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+KV+ +E 
Sbjct: 32  FRMNTDIGQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVVAVEL 90

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   RLE++  D +K D   F         I+N PY I + L F 
Sbjct: 91  DPRMAAEVTKRVQGTPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFK 144

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F 
Sbjct: 145 LLATTPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFK 201

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           P P V S+V+  +P +       +    + + AF ++ KTLR S   LG  ++L+  
Sbjct: 202 PPPAVESSVVRIVPKVPRPDISYDEWDGLLRVAFVRKNKTLRSSF--LGTSSVLNML 256


>gi|126276136|ref|XP_001387199.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (18S rRNA
           dimethylase) [Scheffersomyces stipitis CBS 6054]
 gi|126213068|gb|EAZ63176.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (18S rRNA
           dimethylase) [Pichia stipitis CBS 6054]
          Length = 323

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +G      V+E+G G GNLT  +L   ARKV+ +E 
Sbjct: 30  FKFNTNLGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILEQ-ARKVVAVEM 88

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K D   F         I+N PY I + L+F 
Sbjct: 89  DPRMAAELTKRVHGTPQQKKLEILLGDFMKTDLPYF------DVCISNTPYQISSPLVFK 142

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 143 LLNQPRPP---RVSILMFQREFALRLLARPGDGLYCRLSANVQMWANVTHIMKVGKNNFR 199

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+                  + +  F ++ KT+    K      +L +
Sbjct: 200 PPPQVESSVVRIEVKTPRPNIDFHEWDGLLRIVFVRKNKTIAAGFKSNNVIEILEK 255


>gi|119193222|ref|XP_001247217.1| hypothetical protein CIMG_00988 [Coccidioides immitis RS]
          Length = 346

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+KVI +E D +    
Sbjct: 6   GQHVLKNPGVAQAIVDKADLKQSDVVLEVGPGSGNLTVKILE-KAKKVIAVELDPRMAAE 64

Query: 86  LKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           +       P   RLE++  D +K D   F         I+N PY I + L F  ++    
Sbjct: 65  VTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFKLLATTPA 118

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V S
Sbjct: 119 P---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPAVES 175

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           +V+  +P         +    + + AF ++ KTLR S   LG  ++L   
Sbjct: 176 SVVRIVPKTPRPDISYDEWDGLLRIAFVRKNKTLRSSF--LGTSSVLSML 223


>gi|297626914|ref|YP_003688677.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922679|emb|CBL57256.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N ,
           N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 289

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 17/280 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
             S++   +   + P K +GQNF++D N +++I   +       V+E+G        + L
Sbjct: 10  PTSVRRHANAINLRPTKTLGQNFVVDANTVRRIVSLADVGPEDEVLEVGP-GLGSLTLGL 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH----PNRLEIIQDDALKVDFEKFFNISSPIRII 122
              A  V  +E D      L    ++H      RL ++ DDAL+V   +     +P R++
Sbjct: 69  LASAAGVTAVEIDPVLAAQLPLTVAEHQPDRAGRLRVVTDDALRV---ESLPGPAPTRLV 125

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +        W +  ++ Q EV +R+ A   S  YG  S    W  
Sbjct: 126 ANLPYNVAVPVLLHMLERFA---SWRAGLVMVQLEVADRLVATPGSRTYGVPSAKLAWYA 182

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSL 241
           +A     + P VF+P P V S ++       P      E +  +   AF +RRK LR +L
Sbjct: 183 EAHKAGTVPPSVFWPVPNVESGLVAIQRREPPATSASREQVFAVIDAAFAQRRKMLRSAL 242

Query: 242 KRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            R+ G        +  AGI+  +R E L I  F  I   L
Sbjct: 243 ARIVGSSAAASAAIEAAGIDPTVRGEALDIAAFAAIAEQL 282


>gi|15669218|ref|NP_248023.1| dimethyladenosine transferase [Methanocaldococcus jannaschii DSM
           2661]
 gi|27151565|sp|Q58435|RSMA_METJA RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|1591684|gb|AAB99033.1| dimethyladenosine transferase (ksgA) [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 275

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 130/276 (47%), Gaps = 28/276 (10%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             PKK +GQ FL+D N + K  ES+       V+EIG G G LT+ L    A+KV VIE 
Sbjct: 2   FKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   P   +   +  N +EII  DALKVD  K        +++ANLPY I + + F  I
Sbjct: 61  DKSLEPY-ANKLKELYNNIEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKLI 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   ++   L++Q E  +R+ A++ +  YGRLSV    R    ++  + P  F+P 
Sbjct: 116 KRG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPK 170

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL--------------KR 243
           PKV S ++   P+        E+      +  F  R K++R++L              K+
Sbjct: 171 PKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKK 230

Query: 244 LGGENLLHQAGIET--NLRAENLSIEDFCRITNILT 277
           +  + L   + I+   N +   LS++D   ++N   
Sbjct: 231 ILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFY 266


>gi|219125196|ref|XP_002182872.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405666|gb|EEC45608.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 281

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 129/275 (46%), Gaps = 23/275 (8%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDG------ITVIEIGAGPGNLTQMLLTL-GARK 72
            PK+ +GQN+L D N + KI  +              ++E+G G G LT  L+   GA  
Sbjct: 10  KPKQSLGQNYLKDPNTVAKILRTFHQDATKHRPSVERILELGPGAGALTDRLVETYGAAN 69

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGT 131
           +  IE D++   IL++   +HP  L +   D ++V +         P+ +I NLPY I +
Sbjct: 70  MQAIELDERSVQILRE---KHPG-LRVQHADVMQVSYADLAEAEGQPLVVIGNLPYYITS 125

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           ++LF  ++  +      S T+  Q EVG+R+ A +++  YG LSV+       T  F I 
Sbjct: 126 QILF-ALADASHAGAVHSATVTMQWEVGQRMVAARSTKDYGILSVVFQLYADVTCHFKIP 184

Query: 192 PHVFFPSPKVTSTVIHF------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
           P VF+P PKV S +I                     L+++    F +RRKT+R SLK+L 
Sbjct: 185 PTVFYPKPKVDSALIGLHFLGPARLRQRLAGVRPADLRRVVTSTFQQRRKTVRNSLKKLC 244

Query: 246 GENLL---HQAGIE-TNLRAENLSIEDFCRITNIL 276
             +      +   +  + R E LS   F  IT +L
Sbjct: 245 QGDEFSIQQELPEDWASKRPEELSPGQFIEITRLL 279


>gi|134057541|emb|CAK48895.1| unnamed protein product [Aspergillus niger]
          Length = 319

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 13/231 (5%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+ L +  + ++I + +       V+EIG G GNLT  +L   A+KVI +E D +   
Sbjct: 38  LGQHILKNPGVAQRIVDKAELKQSDVVLEIGPGTGNLTVKILEQ-AKKVIAVELDPRMAA 96

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            +       P   RL++I  D +K D   F         I+N PY I + L F  ++   
Sbjct: 97  EVTKRVQGTPAQKRLDVILGDVIKTDLPYF------DVCISNTPYQISSPLTFKLLATSP 150

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
            P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P V 
Sbjct: 151 AP---RICVLMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPPLVE 207

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS-LKRLGGENLLHQ 252
           S+V+  +P         +    + +  F ++ KT+R S L +    ++L  
Sbjct: 208 SSVVRLVPKNPRPQINYDEWDGLLRILFVRKNKTIRSSFLGKSTVMDMLEA 258


>gi|71894379|ref|YP_278487.1| dimethyladenosine transferase [Mycoplasma synoviae 53]
 gi|119365036|sp|Q4A645|RSMA_MYCS5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|71851167|gb|AAZ43776.1| dimethyladenosine transferase [Mycoplasma synoviae 53]
          Length = 259

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 123/267 (46%), Gaps = 13/267 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++H     KK +GQNFL D NI+ KI       +   V+EIG G G+LT+ LL   A+KV
Sbjct: 1   MNHLDKNAKKSLGQNFLRDKNIINKIVNVFNI-ENEKVLEIGPGQGDLTKELLK-KAKKV 58

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           +  E D+     LK+         E+   D L V+     +      ++AN+PY I + +
Sbjct: 59  LAFEIDKSLIEHLKNEIKDL--HFELRDQDFLNVNLND--DEFKDYYVVANIPYYITSDI 114

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L     +      ++ + L+ QKEV +RI AQKNS +Y +LS+ + +     + F ++ +
Sbjct: 115 LLKIYRSFWN---FKGIVLMVQKEVAQRIVAQKNSKNYSKLSISSQYLADVKIEFIVNKN 171

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK----TLRQSLKRLGGENL 249
            F P+PKV S VI      N     LE + K     F  RRK    TL ++      +  
Sbjct: 172 SFIPAPKVDSAVISLKFKDNIDKENLEKMLKFFLVCFANRRKKLTFTLNRNFNSTKVKLA 231

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
             +  +  N R + L +     +   L
Sbjct: 232 YEKLNLSDNARIQELDVSQIVLLFTYL 258


>gi|294461690|gb|ADE76404.1| unknown [Picea sitchensis]
          Length = 390

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 12/223 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +LK I + +G  +  TV+EIG G GNLT  LL   AR+VI +E D + 
Sbjct: 73  KSRGQHILTNPRVLKSIVDKAGVRETDTVLEIGPGTGNLTLELL-QAARRVIAVEIDPRM 131

Query: 83  FPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              +       +   RLE+++ D L+ D   F         +AN+PY I + L+F  +S 
Sbjct: 132 IEAVHKRVQGTEMAQRLELVRGDILRTDLPSF------DICVANIPYQISSPLIFKLLST 185

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P + + TL+ QKE G R+ A+     + RL+V       A ++ D+S   F P PK
Sbjct: 186 M---PKFRNATLMLQKEFGRRLVAKPGDSLFNRLAVNVDLLASAKLLMDVSKRDFTPCPK 242

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           V S+V+   P   P P  L    + T   F ++ KTL    ++
Sbjct: 243 VDSSVVRIEPRAWPPPVDLSEWNRFTLMCFTRKNKTLGAIFRQ 285


>gi|283851060|ref|ZP_06368344.1| dimethyladenosine transferase [Desulfovibrio sp. FW1012B]
 gi|283573456|gb|EFC21432.1| dimethyladenosine transferase [Desulfovibrio sp. FW1012B]
          Length = 289

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 126/262 (48%), Gaps = 12/262 (4%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            PK+ +GQNFL D N   +I  + G     TVIEIG G G L+  +L  G R  +V+EKD
Sbjct: 31  RPKRSLGQNFLQDPNTAARIVANLGITPADTVIEIGPGRGALSGHILDAGPRAYLVVEKD 90

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +     L    + HP    +   DAL++D+ +   ++  +++I NLPYNI + LL++  +
Sbjct: 91  RDLAARLA---ASHPGA-NVALADALRLDWSRIDRLAD-VKLIGNLPYNIASPLLWDISA 145

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  +     + Q EV  R+ A      YG L+      ++    F + P VF P P
Sbjct: 146 GAC---LFRRGVFMVQHEVALRLAAAPGGRAYGALTAWVAGFSRVQYCFKVPPTVFRPQP 202

Query: 200 KVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQAGI 255
           KV S V+   P      P   ++L K+ +  F  RRK L   LKR+  +++       G+
Sbjct: 203 KVDSAVVALTPLPAGERPADPKALSKLLKLLFSLRRKQLGHILKRVWDDDVAAYFAGQGL 262

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           ++  R ENLS +    +  +L 
Sbjct: 263 DSRDRPENLSPQQLSGLATLLK 284


>gi|325179921|emb|CCA14323.1| dimethyladenosine transferase putative [Albugo laibachii Nc14]
          Length = 311

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 12/233 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P   +GQ+FL +  I  +I   +        +E+G G GNLT  +L   A+KVI +E D 
Sbjct: 29  PNTSIGQHFLKNPMIAAQIVSKAALRSTDVCLEVGPGTGNLTMKILNQ-AKKVIAVEYDL 87

Query: 81  QFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           +    ++      +H   L++I  D ++V    FF++      IANLPY I +  +F  +
Sbjct: 88  RMIAEIQKRVQNTEHAKHLQVIHGDVIRVQLP-FFDVC-----IANLPYQISSPFVFKLL 141

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +     P +    ++FQ+E  +R++A+     Y RLSV T    K   +  +  + F P 
Sbjct: 142 AHR---PMFRCAVVMFQEEFAKRLSAKPGDQLYCRLSVNTQLLAKVDQLIKVGKNNFRPP 198

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           PKV S V+   P   P P        + +  F ++ KTLR          +L 
Sbjct: 199 PKVESRVVRIEPRNPPPPVNFVEWDGMIKILFNRKNKTLRACFLTKPVLKMLE 251


>gi|221060378|ref|XP_002260834.1| dimethyladenosine transferase [Plasmodium knowlesi strain H]
 gi|193810908|emb|CAQ42806.1| dimethyladenosine transferase, putative [Plasmodium knowlesi strain
           H]
          Length = 384

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 110/231 (47%), Gaps = 11/231 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI  ++       V+EIG G GNLT  LL + A+KVI I+ D + 
Sbjct: 63  KKHGQHLLKNPGILDKILLAAKIKSSDVVLEIGCGTGNLTVKLLPI-AKKVITIDIDARM 121

Query: 83  FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +K     +  N LE+ + DA+K  F +F          AN+PY I + L+F  I+  
Sbjct: 122 VSEVKKRCLYEGYNNLEVYEGDAIKTVFPRF------DICTANIPYKISSPLVFKLIAHR 175

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P ++   L+FQKE  ER+ A     +Y RL+V      K   + ++    F P PKV
Sbjct: 176 ---PLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCKVIKICNVDRSSFNPPPKV 232

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S ++  IP  N      +    + +  F ++RKTL    KR    N+L  
Sbjct: 233 DSVILKLIPKENNFFVNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 283


>gi|289193112|ref|YP_003459053.1| dimethyladenosine transferase [Methanocaldococcus sp. FS406-22]
 gi|288939562|gb|ADC70317.1| dimethyladenosine transferase [Methanocaldococcus sp. FS406-22]
          Length = 274

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 12/224 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             PKK +GQ FL+D N +KK  ES+       V+EIG G G LT+ L    A+KV VIE 
Sbjct: 2   FKPKKKLGQCFLIDKNFVKKAVESAEITKDDIVLEIGLGKGILTEELAK-NAKKVYVIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+   P    +   + N +EII  DALKV+ ++        +++ANLPY I + + F  I
Sbjct: 61  DKSLEPYANKLKENY-NNIEIIWGDALKVNLDEL----DFNKVVANLPYQISSPITFKLI 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   ++   L++Q E   R+ A++ +  YGRLSV    R    ++  + P  F P 
Sbjct: 116 KKG-----FDLAVLMYQYEFARRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPTAFSPR 170

Query: 199 PKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSL 241
           PKV S ++   P+ N       +      +  F  R K++R++L
Sbjct: 171 PKVYSAIVKIKPNKNKYHIENEDFFDDFLRTIFQHRNKSVRKAL 214


>gi|291287761|ref|YP_003504577.1| dimethyladenosine transferase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884921|gb|ADD68621.1| dimethyladenosine transferase [Denitrovibrio acetiphilus DSM 12809]
          Length = 267

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 124/257 (48%), Gaps = 9/257 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ+FL     +  IAES  S +   ++EIG G G LT  +L  GA  V  +E D+ 
Sbjct: 16  KKKFGQHFLTSKQFIDMIAESLASAECRQIVEIGPGCGVLTHAMLEKGA-SVTAVEIDED 74

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L      +    ++I  D + +  ++  +    I    NLPYN+   +L + +   
Sbjct: 75  LAEFLPRYLFIYKG-FKVINADFMLITEDQLPD--GKIAFAGNLPYNVSVDILMHCVK-- 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +    E +T +FQKEV +RI A+ N+  Y  LSV+T +  +   + DIS   F+P+ KV
Sbjct: 130 -FFHKIEKMTFMFQKEVADRINAKPNNKEYTSLSVITSYFFEKKKLKDISGGQFWPNTKV 188

Query: 202 TSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRL-GGENLLHQAGIETNL 259
            STV+ F P         E       + +F  +RKTL  +LK        + +AG+  N+
Sbjct: 189 RSTVLEFYPKERHFSAEKELRFLSFVKNSFMMKRKTLHNNLKSYPNHLEAMEKAGLAANI 248

Query: 260 RAENLSIEDFCRITNIL 276
           R E + ++DF R+   +
Sbjct: 249 RGEQMELKDFIRLFEEI 265


>gi|68467333|ref|XP_722328.1| likely dimethyladenosine transferase [Candida albicans SC5314]
 gi|68467562|ref|XP_722214.1| likely dimethyladenosine transferase [Candida albicans SC5314]
 gi|46444170|gb|EAL03447.1| likely dimethyladenosine transferase [Candida albicans SC5314]
 gi|46444295|gb|EAL03571.1| likely dimethyladenosine transferase [Candida albicans SC5314]
 gi|238878254|gb|EEQ41892.1| dimethyladenosine transferase [Candida albicans WO-1]
          Length = 326

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI +E 
Sbjct: 30  FKFNTNLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILE-KARKVIAVEM 88

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K D   F         I+N PY I + L+F 
Sbjct: 89  DPRMAAELTKRVHGTPQEKKLEILLGDFMKTDLPYF------DICISNTPYQISSPLVFK 142

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E  +R+ A+     Y RLS         T +  +  + F 
Sbjct: 143 LLNQPRPP---RVSILMFQREFAQRLVARPGEELYCRLSANVQMWANVTHIMKVGKNNFR 199

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+                  + +  F ++ KT+    K      +L +
Sbjct: 200 PPPQVESSVVRIEIKNPRPNIDFNEWDGLLRIVFVRKNKTIAAGFKSSNVIEILEK 255


>gi|148886596|sp|Q4A936|RSMA_MYCHJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|144227742|gb|AAZ44735.2| dimethyladenosine transferase [Mycoplasma hyopneumoniae J]
          Length = 259

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 122/263 (46%), Gaps = 15/263 (5%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PKK++GQNFL D  I +KI E+        +IEIG G G LT  LL   A+ V   E D+
Sbjct: 6   PKKHLGQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLE-KAKFVTCYEIDR 63

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              PIL+         L II +D L               IIANLPY I +++LF   + 
Sbjct: 64  NLIPILEKKFKNK--NLRIINEDFL----LAELEFKEKKTIIANLPYYITSKILFKIFAN 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 ++ + L+ Q EV +RI A+  +P Y +LS+ + +      +F + P  FFP PK
Sbjct: 118 FEK---FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAHVKKLFVVGPDSFFPKPK 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256
           + S V+ F    N      E     T++ F  +RKTL  +L     +  + +        
Sbjct: 175 INSAVVFFDLRTNLDAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFA 234

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
            N+R + L +  + R+ +   +N
Sbjct: 235 QNIRPQQLDLVTYIRLADFYFNN 257


>gi|303275612|ref|XP_003057100.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461452|gb|EEH58745.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 274

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 126/279 (45%), Gaps = 29/279 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++++GQ+FL+D +++    +++    G +++EIG G GNLT  LL+ GA  V  +EKD+ 
Sbjct: 1   RRWLGQHFLVDRSVILDALDAADVRAGDSILEIGPGTGNLTAELLSAGA-VVTAVEKDRN 59

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---------------SSPIRIIANLP 126
               L +    + N L + + D LK +  K F                     +++AN+P
Sbjct: 60  LADKLAETFRGNEN-LTVHEADFLKWNVAKAFPEPTDAAAADAALGDGAPRRAKVVANIP 118

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER-ITAQKNSPHYGRLSVLTGWRTKAT 185
           YNI T +L   +        +E++  +FQ+EV  R I        Y  +SV   + ++  
Sbjct: 119 YNITTDILKVLL---PMGDTFENMVFMFQEEVARRLIRDDAGGSDYRPMSVRVRYYSEPY 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLN----PIPCCLESLKKITQEAFGKRRKTLRQSL 241
            +  +S   F P P V S +I F P       P+           Q  F ++RK L+ ++
Sbjct: 176 YVRPVSAACFDPPPNVESCLIGFRPRRREEYLPLAGTERQFFAFVQTCFAQKRKMLKNNM 235

Query: 242 KRLGGE----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +    +    + L         RA+ LS+E++  + N +
Sbjct: 236 RAACDDDTIRDALATLNRPEKTRAQELSMEEYVELFNFV 274


>gi|319943018|ref|ZP_08017301.1| dimethyladenosine transferase dimethyltransferase [Lautropia
           mirabilis ATCC 51599]
 gi|319743560|gb|EFV95964.1| dimethyladenosine transferase dimethyltransferase [Lautropia
           mirabilis ATCC 51599]
          Length = 282

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 127/289 (43%), Gaps = 26/289 (8%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M N  H          +IP+K  GQ+FL D   +  I ++     G  ++EIG G G LT
Sbjct: 1   MANHRHDAGREKRPAGVIPRKRFGQHFLADRACIDAIVQAIAPRSGDNLVEIGPGTGVLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             L+      + VIE D+   P L    +Q+ + L ++Q D L+VDF  F      +RI+
Sbjct: 61  APLVAQTGH-ITVIEIDRDLGPRLA---AQYGDALTLVQQDVLQVDFSGF---GQNLRIV 113

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPYNI + LL + I+             + QKEV +RI A   S   GRL+V      
Sbjct: 114 GNLPYNISSPLLLHLIAVAD---RVRDQHFMLQKEVVDRIVAGPGS-DMGRLTVFLQNHY 169

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +   +FD+ P  F P PKV S+V+  +P   P    +  L+     A+ +RRK LR++L 
Sbjct: 170 QVVKLFDVPPEAFDPPPKVDSSVVRMVPLPRPHTTAIAQLEAALAAAYAQRRKMLRRTLG 229

Query: 243 RLGGEN--------------LLHQAGIETNLRAENLSIEDFCRITNILT 277
               +                L     + + R E +    +  + + L 
Sbjct: 230 GWLAQQHPSFDLDKAAADDARLVPLT-DLSQRPEQIPATAWYALADALA 277


>gi|295395177|ref|ZP_06805385.1| dimethyladenosine transferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971939|gb|EFG47806.1| dimethyladenosine transferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 282

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 134/287 (46%), Gaps = 26/287 (9%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MT    + +++       + P K  GQNF++D N ++ I E +    G  V+EIG G G+
Sbjct: 1   MT----ARTVREFAHELGLRPTKTRGQNFVIDPNTVRMIVEEAQLTTGEQVVEIGPGLGS 56

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKVDFEKFFNISS 117
           LT  LL  G   V  +E D+     L     +H      L +I DDAL V        ++
Sbjct: 57  LTLGLLEAG-HPVTAVEIDRLLASRLPRTIDEHAPDAHPLTLINDDALHVTE----LPTT 111

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P  ++ANLPYN+   +L +++      P   S+ ++ Q EV  R+ A   S  YG  SV 
Sbjct: 112 PTALVANLPYNVAVPVLMHFLET---FPSLNSVLVMVQAEVANRLAATPGSRVYGAPSVK 168

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL----KKITQEAFGKR 233
             W    T   DI  +VF+P+P V S ++  + H  P     E L      +   AF +R
Sbjct: 169 AKWYGAVTRGSDIGKNVFWPAPNVGSGLVRIVKHAQPYG--DEELRTATFDVVNAAFAQR 226

Query: 234 RKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNI 275
           RKTLRQ+L  L G     E +L  +GI+   R E L I+ F  I   
Sbjct: 227 RKTLRQALAGLLGSGADSEQVLVDSGIDPKTRGEALDIDAFITIART 273


>gi|170595215|ref|XP_001902290.1| Probable dimethyladenosine transferase [Brugia malayi]
 gi|158590104|gb|EDP28858.1| Probable dimethyladenosine transferase, putative [Brugia malayi]
          Length = 306

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 12/229 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  I+  I E S      TV E+G+G GNLT  LL   A+KVI  E D++    
Sbjct: 28  GQHILKNPGIVNAIVEKSAIKSTDTVFEVGSGTGNLTVALLG-KAKKVIACEIDRRMIAE 86

Query: 86  LKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           LK       N  +LE+ Q D +K ++  FF++      +ANLPY I +  +F  +     
Sbjct: 87  LKKRVIGTSNQQKLEVRQGDVIKTEWP-FFDVC-----VANLPYQISSPFVFKLLLQRPL 140

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
           P +     L+FQKE  +R+ A+  +  Y RLSV   +  +   +  +    F P PKV S
Sbjct: 141 PRY---AVLMFQKEFADRLLAKPGNKLYCRLSVNVQFLAQVEHLMKVKRTEFRPPPKVDS 197

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            V+   P   P     +    + +  F ++ KTL    K     + L +
Sbjct: 198 AVVRIAPRNPPPQINFQEWDSLLRIIFLRKNKTLLSLFKNNQVCDSLEK 246


>gi|224004354|ref|XP_002295828.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585860|gb|ACI64545.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 275

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 126/270 (46%), Gaps = 17/270 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITV--IEIGAGPGNLTQMLLTL-GARKVIV 75
             PK+ +GQN+L D N + KI  +  +     +  +E+G G G LT +L+   G   +  
Sbjct: 9   FRPKQSLGQNYLRDGNTVAKICRAFATQQKTQLRAVELGPGAGALTDVLVNSIGKPNLQC 68

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLL 134
           IE DQ+   +L +   +    L I   D L+ D+ +   +   P+ II NLPY I +++L
Sbjct: 69  IEIDQRSVELLSEKHPE----LRIHHLDVLQADYPQLSIDEKGPLSIIGNLPYYITSQIL 124

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  ++  +      S T+  Q EVG RI A      YG LSV+        + F I P V
Sbjct: 125 F-ALADASHSNAVRSATVTMQYEVGRRIVAPTRCKDYGILSVVFQLYADCKIHFKIPPTV 183

Query: 195 FFPSPKVTSTVIHF------IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           F+P PKV S +I                    +L+ +    F +RRKT+R  L+ L    
Sbjct: 184 FYPQPKVDSALIGLHFLGPTALRRRLAGVSPSNLRAVVTATFQQRRKTVRNGLRNLALTF 243

Query: 249 LLHQAGIE--TNLRAENLSIEDFCRITNIL 276
            L+Q   +  +++R E L+   F  +T +L
Sbjct: 244 ALNQELPKNWSSMRPEELTPGQFVEVTRLL 273


>gi|148377319|ref|YP_001256195.1| dimethyladenosine transferase(S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA)dimethyltransferase) (16S rRNA
           dimethylase) (high levelkasugamycin resistance protein
           ksgA) (kasugamycindimethyltransferase) [Mycoplasma
           agalactiae PG2]
 gi|148291365|emb|CAL58748.1| Dimethyladenosine transferase(S adenosylmethionine 6 N', N'
           adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High levelkasugamycin resistance protein
           ksgA) (Kasugamycindimethyltransferase) [Mycoplasma
           agalactiae PG2]
          Length = 270

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 124/263 (47%), Gaps = 14/263 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H +   KK  GQNFL   +++KKI +     +G  +IEIG G G LT+ L+   + K++
Sbjct: 12  DHLQPKAKKKFGQNFLHSDSVIKKIVDIISP-EGKQIIEIGPGTGALTKHLVNKCS-KLV 69

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
             E D      L   +  +     ++ DD L  + +++        ++ N+PY I + ++
Sbjct: 70  AFEIDPDMIEFLNQQNYFNSENNMLVHDDFLNANLDQYV----YFEVVGNIPYYITSEII 125

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  I        ++  TLL QKEV +RI A  NS  Y +LS+   +  K      +S + 
Sbjct: 126 FKLIENR---FLFKRATLLVQKEVADRIVAAPNSYEYSKLSITCQYVAKVKKELFVSKNN 182

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-ENLLHQ- 252
           F P PKV S ++ F  + N      E LK   +  F  RRK L  SLK++   E +L+  
Sbjct: 183 FSPIPKVDSAIVTFDFYQN-HNDNYEQLKDFFKLCFSARRKKLIWSLKQVYSQEKILNAY 241

Query: 253 --AGIETNLRAENLSIEDFCRIT 273
               I  N+R + L +E   ++ 
Sbjct: 242 SLLNISENIRIQQLDLETIRQLY 264


>gi|291319987|ref|YP_003515245.1| dimethyladenosine transferase(S adenosylmethionine 6 N', N'
           adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High levelkasugamycin resistance protein
           ksgA) (Kasugamycindimethyltransferase) [Mycoplasma
           agalactiae]
 gi|290752316|emb|CBH40287.1| Dimethyladenosine transferase(S adenosylmethionine 6 N', N'
           adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High levelkasugamycin resistance protein
           ksgA) (Kasugamycindimethyltransferase) [Mycoplasma
           agalactiae]
          Length = 270

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 122/262 (46%), Gaps = 14/262 (5%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK  GQNFL   +++KKI +     +G  +IEIG G G LT+ L+     K++  E D
Sbjct: 17  KAKKKFGQNFLHSDSVIKKIVDIISP-EGKQIIEIGPGTGALTKHLV-NKCTKLVAFEID 74

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 L   +  +     ++ DD L  + +++        ++ N+PY I + ++F  I 
Sbjct: 75  PDMIKFLNQQNYFNSENNMLVHDDFLNANLDQYA----YFEVVGNIPYYITSEIIFKLIE 130

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  ++  TLL QKEV +RI A  NS  Y +LS+   +  K      +S + F P P
Sbjct: 131 NR---FLFKRATLLVQKEVADRIVAMPNSYEYSKLSITCQYVAKVKKELFVSKNNFSPVP 187

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG-ENLLHQ---AGI 255
           KV S ++ F  + +      E LK   +  F  RRK L  SLK++   E +L+      I
Sbjct: 188 KVDSAIVTFDFYQDKND-NYEQLKDFFKLCFSARRKKLIWSLKQVYSQEKILNAYSVLNI 246

Query: 256 ETNLRAENLSIEDFCRITNILT 277
             N+R + L +E   ++   L 
Sbjct: 247 SENIRIQQLDLETIKQLYAELE 268


>gi|71028934|ref|XP_764110.1| dimethyladenosine transferase [Theileria parva strain Muguga]
 gi|68351064|gb|EAN31827.1| dimethyladenosine transferase, putative [Theileria parva]
          Length = 388

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 129/292 (44%), Gaps = 45/292 (15%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +I  K  GQ+ L +  +L KI +++      TV+EIG G GN T  L+TL A+KV+ I+
Sbjct: 67  GMIFVKKYGQHMLKNPGVLDKIIKAAEIRPTDTVLEIGPGTGNWTVRLVTL-AKKVVAID 125

Query: 78  KDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D +    +K+   Q     LE+I+ DAL+  F KF         +ANLP+ I +  +F 
Sbjct: 126 VDARMISEVKNRCFQLGYTNLEVIEADALRTTFPKF------DICMANLPFQISSPFIFK 179

Query: 137 WISADTWPPFW--------ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
            +S      +         ES  L+FQKE  ER+ A  N   YGRL++ T      T + 
Sbjct: 180 LLSHRPLFRYLFHYYYFALESAILVFQKEFAERLLASTNDDKYGRLAINTRLFCTVTRIC 239

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL---- 244
            +S   F P PKV S V+  +P   P+         + +  F ++R+TLR   K+     
Sbjct: 240 KVSAGSFNPPPKVESMVVKIVPREQPLVVDFGEWDGMIRICFSRKRRTLRSLFKKQSVLS 299

Query: 245 ------------------------GGENLLHQAGIETNLRAENLSIEDFCRI 272
                                       +L  +G+    R+  +SI +F ++
Sbjct: 300 ILESNYKSWCTINNKVPVVKPFKEFVIEILEGSGL-AERRSITVSIAEFLKL 350


>gi|319936596|ref|ZP_08011010.1| hypothetical protein HMPREF9488_01843 [Coprobacillus sp. 29_1]
 gi|319808394|gb|EFW04954.1| hypothetical protein HMPREF9488_01843 [Coprobacillus sp. 29_1]
          Length = 271

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 19/283 (6%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M    K  + + +L  YK+   K  GQNFL+DLN +K+I  ++       VIEIG G G 
Sbjct: 1   MKDIAKKSNTQYLLDKYKLQASKKFGQNFLIDLNTIKRIVATTHIDKETCVIEIGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           L++ L    A  V   E D +   +LK+   +  N +E++  D L VD     E+     
Sbjct: 61  LSEQLA-YHAGYVRCYEIDTRLKDLLKESLGEFTN-IEVVFQDFLTVDLKKIVEELKQTY 118

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           S + IIANLPY I + +L + I +        S+  + QKEV  ++T   ++ ++  L+ 
Sbjct: 119 SKVCIIANLPYYITSDILEHIICSQA---SLSSIHAMVQKEVALKLT---DTQYHSPLTF 172

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           +       ++   +S +VF P+P+V S +I    H          L  + ++AF ++RKT
Sbjct: 173 MIESIGTISLDMHVSRNVFSPAPRVDSAIIAIHIHKEYNIL----LTHLLKQAFTQKRKT 228

Query: 237 LRQSLKRLGGEN---LLHQAGIETNLRAENLSIEDFCRITNIL 276
           +  +LK + G N   +L Q  I+ N R E L IED+ ++T  L
Sbjct: 229 IYNNLKVIFGTNTKYILEQCQIKENKRPEELKIEDYLKLTKYL 271


>gi|222823065|ref|YP_002574638.1| dimethyladenosine transferase [Campylobacter lari RM2100]
 gi|222538286|gb|ACM63387.1| dimethyladenosine transferase [Campylobacter lari RM2100]
          Length = 273

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 120/268 (44%), Gaps = 14/268 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK+ GQNFL D +++ KI ++    D   ++EIG G G+LTQ LL +    +   E 
Sbjct: 2   IKAKKHFGQNFLCDKSVVDKIIQAI-PKDTKNIVEIGPGLGDLTQELLKIPQAHIRAYEI 60

Query: 79  DQQFFPILKDISSQH--PNRLEIIQDDALK-VDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           D+   PIL             E+I  +A    D     +      ++ANLPY I T L+ 
Sbjct: 61  DKDLIPILNKKFQNEIEGGNFELIHQNASDAFDQGSLSDKE--YFLVANLPYYIATNLIL 118

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +           L ++ QKEV ++  A +   ++  L VL     +  M+FDI P  F
Sbjct: 119 KALEDQNCL----GLIVMVQKEVAQKFCANEKESNFSALGVLCALICQRQMLFDIQPQSF 174

Query: 196 FPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLH 251
            P PKVTS V+  I   H       +E+ K+  +  F   RK L  + K    +      
Sbjct: 175 NPPPKVTSAVMKLIKTTHYQQKCENIEAFKEFLRACFQNPRKQLLSNFKNKKEKILKAFE 234

Query: 252 QAGIETNLRAENLSIEDFCRITNILTDN 279
              I +  RA  +S++ + +I + L D+
Sbjct: 235 ALDISSTSRAHEISVDSYLKIYDYLKDD 262


>gi|257463687|ref|ZP_05628077.1| dimethyladenosine transferase [Fusobacterium sp. D12]
 gi|317061234|ref|ZP_07925719.1| dimethyladenosine transferase [Fusobacterium sp. D12]
 gi|313686910|gb|EFS23745.1| dimethyladenosine transferase [Fusobacterium sp. D12]
          Length = 268

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 84/268 (31%), Positives = 124/268 (46%), Gaps = 17/268 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL     IL +I E S       ++EIG G G LT++LL   A+ V+ IE
Sbjct: 3   FQHKKKYGQNFLTKQAEILARILEVSEVQKQDNILEIGPGEGALTELLLQE-AKSVVNIE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+   PIL+     + N   +I  D L+VDF K+       +++AN+PY I + ++   
Sbjct: 62  IDEDLKPILEKKFGNNEN-YRLIMGDVLEVDFSKYMEEG--TKVVANIPYYITSPIIQKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I   +  P   +  L+ QKEVGERI A++       L++   +  +A  +F I    F P
Sbjct: 119 IEHRSLIP---AAFLMVQKEVGERICAKRG-RERSALTLSVEYFARAEYLFTIPKEYFTP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            PKV S  I                E   K  +  F  +RK L  +   LG      +  
Sbjct: 175 VPKVDSAFIGIHMKEREEIAKQIPEELFFKYVKAGFWNKRKNLVNNFSSLGFSKTEIKES 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           L + GI  N RAENLS++++  +   L 
Sbjct: 235 LIKLGIAENERAENLSLQEWFSVIETLE 262


>gi|322699660|gb|EFY91420.1| dimethyladenosine transferase dimethyltransferase [Metarhizium
           acridum CQMa 102]
          Length = 390

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 18/246 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                  GQ+ L +  +   I E +      TV+EIG G GNLT  +L   A+K I +E 
Sbjct: 36  FKFNTNFGQHILKNPGVSDAIVEKAYLKPTDTVLEIGPGTGNLTVRILER-AKKCICVEL 94

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +LE++  D +K +  +F         I+N PY I + L+F 
Sbjct: 95  DPRMAAEVTKRVQGTPEQRKLEVVLGDVIKTELPQF------DVCISNTPYQISSPLVFK 148

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P    +  L+FQ+E   R+TA+   P Y R+SV   +  K T +  +  + F 
Sbjct: 149 LLAMPNPP---RTSVLMFQREFALRLTARPGDPLYSRISVNAQFWAKITHIMKVGKNNFR 205

Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P P+V S+V+   P    +      +    + +  F ++ KTLR S   LG   +L    
Sbjct: 206 PPPQVESSVVRIEPKVGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTREVLT--M 261

Query: 255 IETNLR 260
           +E N R
Sbjct: 262 VEKNYR 267


>gi|256845838|ref|ZP_05551296.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_36A2]
 gi|256719397|gb|EEU32952.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_36A2]
          Length = 264

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 126/270 (46%), Gaps = 17/270 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL + + IL +I E S   D   ++EIG G G LT +L+    +KV  +E
Sbjct: 3   FKHKKKYGQNFLNNKDEILNRIIEVSNINDNDEILEIGPGQGALTSLLVER-VKKVTCVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   S   N + +I  D L++D  ++ N     +++AN+PY I + ++   
Sbjct: 62  IDKDLENTLRKKFSSKENYI-LIMGDVLEIDLRRYINQG--TKVVANIPYYITSPIINKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         +   ++ QKEVGERI A+      G L++   +  +A  +F I    F P
Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGEAEYLFTILREFFNP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            P V S  I    + +         +   K  + AF  +RK +  +L  LG      + +
Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+Q  +  N RAEN+SI+ F  + NI    
Sbjct: 235 LNQIEVPENERAENISIDKFIELINIFESR 264


>gi|115611397|ref|XP_001177234.1| PREDICTED: similar to transcription factor B1, mitochondrial
           [Strongylocentrotus purpuratus]
 gi|115613229|ref|XP_791286.2| PREDICTED: similar to transcription factor B1, mitochondrial
           [Strongylocentrotus purpuratus]
          Length = 259

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 15/249 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  Y +  +K++ QNFLLDL +  KI   +G+L G  V E+G GPG +T+ +
Sbjct: 8   PLPTIREIIRLYGLRAEKHLAQNFLLDLKLTDKIVRQAGNLQGAHVCEVGPGPGGITRSI 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           +  G + ++VIEKD +F P L+ ++     R+ +  DD L+V+    F         +  
Sbjct: 68  INRGVQDLLVIEKDTRFIPSLEMLTEATEGRVRVACDDILRVNLADAFPHHIKKDWKDDP 127

Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             + I+ NLP+N+   L+  W+ +       +      + L FQKEV ER+TA       
Sbjct: 128 PNLHIVGNLPFNVSLPLMLRWLESVADRTGPFSFGRTRMLLTFQKEVAERLTAPPGDDQR 187

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAF 230
            RLS++     +    F I    F P P++   V+H  P  +P I    + ++K+ +  F
Sbjct: 188 SRLSIMAQHLCQVKQCFVIPGAAFVPKPQIDVGVVHLTPLRDPEIDAPFKLVEKLVRSVF 247

Query: 231 GKRRKTLRQ 239
             R+K  ++
Sbjct: 248 HFRKKYCKR 256


>gi|254167515|ref|ZP_04874367.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
 gi|197623778|gb|EDY36341.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
          Length = 238

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 117/254 (46%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL++  I   I + +       V+EIG G G LT  LL     +V  IE D+   
Sbjct: 3   RYSQNFLINPKIADYIVKEAEIKPDDIVLEIGPGKGILTDKLLEKC--EVYAIEIDKTLC 60

Query: 84  PILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L  I   +    RL +I  DALKVDF KF       +I+AN+PY+I + LLF  +  +
Sbjct: 61  EYLSIIFQDYIKNGRLHLICGDALKVDFPKF------NKIVANIPYHISSPLLFKILEYE 114

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E   L+ Q E  ER+ A+  S  YGRLSV+  +  +A ++  +    F P P+V
Sbjct: 115 -----FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFKPVPRV 169

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S ++      +      + L +  ++ F +RRK +R  L+ +   +           R 
Sbjct: 170 DSAIVKIT-KKDRFCYDKDKLNEFVRKLFEQRRKKIRNILEEVPYGDS----------RV 218

Query: 262 ENLSIEDFCRITNI 275
           E LS E+ C +   
Sbjct: 219 EELSPEEICEVVQY 232


>gi|110590504|pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
           Plasmodium Falciparum
 gi|110590505|pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
           Plasmodium Falciparum
          Length = 299

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 111/228 (48%), Gaps = 11/228 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  IL KI  ++       V+EIG G GNLT  LL L A+KVI I+ D +    
Sbjct: 21  GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISE 79

Query: 86  LKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +K     +  N LE+ + DA+K  F KF          AN+PY I + L+F  IS     
Sbjct: 80  VKKRCLYEGYNNLEVYEGDAIKTVFPKF------DVCTANIPYKISSPLIFKLISHR--- 130

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
           P ++   L+FQKE  ER+ A     +Y RL++      K T + +++   F P PKV S 
Sbjct: 131 PLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSV 190

Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           ++  IP  +      +    + +  F ++RKTL    KR    N+L  
Sbjct: 191 IVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 238


>gi|322710252|gb|EFZ01827.1| dimethyladenosine transferase dimethyltransferase [Metarhizium
           anisopliae ARSEF 23]
          Length = 388

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 110/246 (44%), Gaps = 18/246 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                  GQ+ L +  +   I E +      TV+EIG G GNLT  +L   A+K I +E 
Sbjct: 36  FKFNTNFGQHILKNPGVSDAIVEKAYLKPTDTVLEIGPGTGNLTVRILER-AKKCICVEL 94

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +LE+I  D +K +  +F         I+N PY I + L+F 
Sbjct: 95  DPRMAAEVTKRVQGTPEQRKLEVILGDVIKTELPQF------DVCISNTPYQISSPLVFK 148

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P    +  L+FQ+E   R+TA+   P Y R+SV   +  K T +  +  + F 
Sbjct: 149 LLAMPNPP---RTSVLMFQREFALRLTARPGEPLYSRISVNAQFWAKITHIMKVGKNNFR 205

Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P P+V S+V+   P    +      +    + +  F ++ KTLR S   LG   +L    
Sbjct: 206 PPPQVESSVVRIEPKVGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTREVLT--M 261

Query: 255 IETNLR 260
           +E N R
Sbjct: 262 VEKNYR 267


>gi|19703632|ref|NP_603194.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|27151573|sp|Q8R6B1|RSMA_FUSNN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|19713742|gb|AAL94493.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 264

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 125/268 (46%), Gaps = 17/268 (6%)

Query: 19  IIPKKYMGQNFLLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL + + IL KI E S   D   ++EIG G G LT +L+    +K+  +E
Sbjct: 3   FKHKKKYGQNFLNNKDEILNKIIEVSNIDDNDEILEIGPGQGALTSLLVER-VKKITCVE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L+   S   N   ++ +D L+VD  ++ N     +++AN+PY I + ++   
Sbjct: 62  IDKDLENTLRKKFSSKEN-YTLVMEDVLEVDLRRYINQG--TKVVANIPYYITSPIINKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I         +   ++ QKEVGERI A+      G L++   +  ++  +F I    F P
Sbjct: 119 IENKD---LIDEAYIMVQKEVGERICAKSG-KERGILTLAVEYYGESEYLFTIPREFFNP 174

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            P V S  I    + +         +   K  + AF  +RK +  +L  LG      + +
Sbjct: 175 IPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEI 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           L+Q  I  N RAEN+SI+ F  +  I  
Sbjct: 235 LNQIEISENERAENISIDKFIELIKIFE 262


>gi|68071473|ref|XP_677650.1| dimethyladenosine transferase [Plasmodium berghei strain ANKA]
 gi|56497848|emb|CAH94950.1| dimethyladenosine transferase, putative [Plasmodium berghei]
          Length = 381

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 110/231 (47%), Gaps = 11/231 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI  ++       V+EIG G GNLT  LL L ++KVI I+ D + 
Sbjct: 75  KKHGQHLLKNPGILDKIIMAAKIKSSDIVLEIGCGTGNLTVKLLPL-SKKVITIDIDARM 133

Query: 83  FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +K     +  N LE+ + DA+K  F KF          AN+PY I + L+F  I+  
Sbjct: 134 ISEVKKRCLYEGYNNLEVYEGDAIKTIFPKF------DVCTANIPYKISSPLIFKLIAHR 187

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P ++   L+FQKE  ER+ A     +Y RL+V      +   + ++    F P PKV
Sbjct: 188 ---PLFKCAVLMFQKEFAERMLANVGDNNYSRLTVNVKLFCRVIKVCNVDRSSFNPPPKV 244

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S V+  IP  N      +    + +  F ++RKTL    KR    N+L  
Sbjct: 245 DSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 295


>gi|255088241|ref|XP_002506043.1| predicted protein [Micromonas sp. RCC299]
 gi|226521314|gb|ACO67301.1| predicted protein [Micromonas sp. RCC299]
          Length = 266

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 127/271 (46%), Gaps = 21/271 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++++GQ+FL+D +++    +++   DG  ++EIG G GNLT  L+  GA  +  +EKD+ 
Sbjct: 1   RRWLGQHFLIDHSVILDALDAAAVTDGDRILEIGPGTGNLTVELVKAGA-VITAVEKDRN 59

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-------PIRIIANLPYNIGTRLL 134
               L+       + + + + D LK +  + F             +++AN+PYNI T +L
Sbjct: 60  LADKLR-TQYDGDDAVTVHEADFLKWNVAREFEHRGVYPGDAHRAKVVANIPYNITTDIL 118

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKATMMFDISPH 193
              +        +  +  +FQ+EV  R+  Q   +  Y  +SV   + ++   +  ++  
Sbjct: 119 KTLL---PMGDTFGDMVFMFQEEVARRLIRQDSGASDYRPMSVRVHYYSEPYYIRPVTAS 175

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCL----ESLKKITQEAFGKRRKTLRQSLKRLGGEN- 248
            F P P V S ++ F P        L    +      Q  F ++RK L+ +L+ +  +  
Sbjct: 176 CFDPPPNVESCLVGFRPKPRRELPALRGTEKQFFSFVQACFAQKRKMLKNNLRAVCDDEV 235

Query: 249 ---LLHQAGIETNLRAENLSIEDFCRITNIL 276
               L   G +   RA+ L+++++ R+ N +
Sbjct: 236 IAAALEDLGRDEKTRAQQLTMDEYVRLFNFV 266


>gi|159107917|ref|XP_001704233.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803]
 gi|157432290|gb|EDO76559.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803]
          Length = 316

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 10/238 (4%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
                 K  GQ+ L +  ++K I E +      TV+EIG G GNLT  LL   AR VI I
Sbjct: 2   QGFELTKQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KARHVIAI 60

Query: 77  EKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           E D +    LK   +  P    +  II  D  K+   +          ++N PYNI + +
Sbjct: 61  EIDPRMVSELKKRIAAIPEYRGKFTIIHKDFTKMPPSEI---PPFDLCVSNCPYNISSGI 117

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F  +     P  +    L+FQ E  +R+ A+     Y RL+V T   +K  ++  +S +
Sbjct: 118 VFRLLEIQPLPRKF---VLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRN 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P P V S V+   P   P    L+    +T+  F K+ KTL    K     + L 
Sbjct: 175 SFKPPPNVDSAVVEMYPVGPPPGLDLDEFNGLTRILFSKKNKTLGAIFKTKSLLDDLA 232


>gi|197294383|ref|YP_001798924.1| dimethyladenosine transferase [Candidatus Phytoplasma australiense]
 gi|226732607|sp|B1V9I5|RSMA_PHYAS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|171853710|emb|CAM11607.1| Dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) [Candidatus
           Phytoplasma australiense]
          Length = 284

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 95/270 (35%), Positives = 142/270 (52%), Gaps = 24/270 (8%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +  PKK  GQNFL D+N+LKKI   +    G  VIEIG G G+LT  L+T  A  ++  E
Sbjct: 2   QHQPKKKYGQNFLKDVNLLKKIVSKANL-KGKNVIEIGPGKGSLTN-LITKEANLLLAYE 59

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGTRL 133
            D    P L         +++II DD LK     DF+ +F+I+  + +I+NLPY I T +
Sbjct: 60  IDPTLKPFL----VFDTTKIKIIYDDFLKRDLVKDFDNYFSINCQLSLISNLPYYITTTI 115

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF  I      P     TL+ QKEVG R+ AQ NS +Y  LSV+T +      + ++  H
Sbjct: 116 LFKIIQT----PQIVDATLMMQKEVGMRLMAQPNSKNYNALSVITQYFFNIEKIQEVKSH 171

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQSLKRLG---- 245
           +FFP PKV S V+    H +          ++     + AF ++RKTL  +L  +     
Sbjct: 172 MFFPQPKVDSVVLKLSKHKSDFNTFSTSSQKNFITFVKAAFKQKRKTLLNNLSSVFLLPK 231

Query: 246 GENLL--HQAGIETNLRAENLSIEDFCRIT 273
            E +L   Q  + T +RAE +++++F +I+
Sbjct: 232 TEIILFFEQNKLLTKIRAEEITLKEFQKIS 261


>gi|156102204|ref|XP_001616795.1| dimethyladenosine transferase [Plasmodium vivax SaI-1]
 gi|148805669|gb|EDL47068.1| dimethyladenosine transferase, putative [Plasmodium vivax]
          Length = 417

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 110/231 (47%), Gaps = 11/231 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI  ++       V+EIG G GNLT  LL + A+KVI I+ D + 
Sbjct: 82  KKHGQHLLKNPGILDKILLAAKIKSSDVVLEIGCGTGNLTVKLLPI-AKKVITIDIDARM 140

Query: 83  FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +K     +  N LE+ + DA+K  F +F          AN+PY I + L+F  I+  
Sbjct: 141 VSEVKKRCLYEGYNNLEVYEGDAIKTVFPRF------DICTANIPYKISSPLIFKLIAHR 194

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P ++   L+FQKE  +R+ A     +Y RL+V      K   + ++    F P PKV
Sbjct: 195 ---PLFKCAVLMFQKEFADRMLANVGDSNYSRLTVNVKLFCKVVKICNVDRSSFNPPPKV 251

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S ++  IP  N      +    + +  F ++RKTL    KR    N+L  
Sbjct: 252 DSVILKLIPKENNFFINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 302


>gi|300120833|emb|CBK21075.2| unnamed protein product [Blastocystis hominis]
          Length = 314

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 125/299 (41%), Gaps = 50/299 (16%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            K  +GQ+F+ +++++  I E SG      V+EIG G G LT  LL   A+KVI IEKD+
Sbjct: 21  AKGGLGQHFIKNISVVHNIIEKSGIKPTDIVLEIGPGAGILTMELLK-KAKKVIAIEKDE 79

Query: 81  QFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           +    ++      ++ + LEI+  D LKV+   F         ++N+PY I + ++F  +
Sbjct: 80  RMVHEIQKKVQGTEYESHLEIVYGDFLKVELPYF------DLCVSNVPYVISSGVVFKLL 133

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P + +  L+FQ+E  +R+ A+     Y R+SV T    +   +  +  + F P 
Sbjct: 134 QHR---PIFRAAILMFQEEFTQRLCAKPGDNMYSRISVNTQLLARTQQLLKVGRNNFNPP 190

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----- 253
           PKV S V    P         E    +    F ++ KTL    K      LL +      
Sbjct: 191 PKVESRVCRIEPLNPRPEVNFEEWDGLVNICFHRKNKTLAAIFKNKSVLELLQKNYEMYC 250

Query: 254 -------------------------GIETNL--------RAENLSIEDFCRITNILTDN 279
                                    GI  +L        RA  +SIEDF R+ +   D 
Sbjct: 251 ALKDIVPRGDMDIKQVVEEVLNSCWGISGSLGVGELGQQRASKMSIEDFMRLLDAFLDR 309


>gi|147794654|emb|CAN73506.1| hypothetical protein VITISV_007907 [Vitis vinifera]
          Length = 383

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 104/223 (46%), Gaps = 12/223 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   S      TV+EIG G GNLT  LL   A++V+ +  D + 
Sbjct: 50  KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLL-QAAQRVVAVXLDARM 108

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL+   ++H   ++L +I  DALK DF +F        ++AN+PY I + L+   +  
Sbjct: 109 VEILRKRVAEHGLEDQLTVICKDALKTDFPQF------DLVVANIPYGISSPLVAKLVFG 162

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 + S TLL QKE   R+ A      + RL+V      +   + D+S   F P PK
Sbjct: 163 ANP---FRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPK 219

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           V S+V+   P        L      T+  F K+ KTL  + K 
Sbjct: 220 VDSSVVTIRPKAEIPDVDLNEWCAFTRTCFSKKNKTLGATFKH 262


>gi|94970375|ref|YP_592423.1| dimethyladenosine transferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|122064276|sp|Q1ILA1|RSMA_ACIBL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|94552425|gb|ABF42349.1| dimethyladenosine transferase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 285

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 130/276 (47%), Gaps = 24/276 (8%)

Query: 21  PKK-YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            KK  +GQNFL D +   KI E+ G +   TV+EIG G G +T  L    A+++I +E D
Sbjct: 13  AKKAKLGQNFLSDASGALKIVEALGDISDATVVEIGPGRGAITDHLAKR-AKRLIAVEID 71

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI------------SSPIRIIANLPY 127
           +     L+   S+  N +EI++ D L V+                      +RII NLPY
Sbjct: 72  RVLAAQLRLRYSRLEN-VEILEADILAVELSTVLAQRIGPLRDLRPTKPEKVRIIGNLPY 130

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + +L     A     F     ++ QKEV +RI A+  +  YG LS  +   T    +
Sbjct: 131 YITSDILLRLFEAHALIDF---AVIMVQKEVADRIAAKPGTRDYGLLSATSQLYTHVEKL 187

Query: 188 FDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK--- 242
           F + P  F P+P+V STV+     P L  +    E      +  FG++RKTL  +L+   
Sbjct: 188 FTLPPGSFNPAPQVHSTVLKLQMEPKLEALGVDEEGFDSFLKLIFGQKRKTLFNNLRVAY 247

Query: 243 -RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                   +   G+++++RAE +++E   ++ N L 
Sbjct: 248 DMAKAREAMKAVGLKSDVRAEAVALEKTAQLYNELR 283


>gi|70953687|ref|XP_745929.1| dimethyladenosine transferase [Plasmodium chabaudi chabaudi]
 gi|56526401|emb|CAH78914.1| dimethyladenosine transferase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 379

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 110/231 (47%), Gaps = 11/231 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL KI  ++       V+EIG G GNLT  LL L A+KVI I+ D + 
Sbjct: 75  KKHGQHLLKNPGILDKIIIAAKIKSSDVVLEIGCGTGNLTIKLLPL-AKKVITIDIDARM 133

Query: 83  FPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +K     +  + LE+ + DA+K  F +F          AN+PY I + L+F  I+  
Sbjct: 134 ISEVKKRCLYEGYSNLEVYEGDAIKTIFPRF------DVCTANIPYKISSPLIFKLIAHR 187

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P ++   L+FQKE  ER+ A     +Y RL+V      +   + ++    F P PKV
Sbjct: 188 ---PLFKCAVLMFQKEFAERMLANVGDSNYSRLTVNVKLFCRVIKVCNVDRSSFNPPPKV 244

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S V+  IP  N      +    + +  F ++RKTL    KR    N+L  
Sbjct: 245 DSIVLKLIPKENNSMINFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEH 295


>gi|254166890|ref|ZP_04873744.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
 gi|197624500|gb|EDY37061.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
          Length = 238

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 115/254 (45%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL++  I   I + +       V+EIG G G LT  LL     +V  IE D+   
Sbjct: 3   RYSQNFLINPKIADYIVKEAEIKPNDIVLEIGPGKGILTGKLLEKC--EVYAIEIDKTLC 60

Query: 84  PILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L  I        RL +I  DALKV+F KF       +I+AN+PY+I + LLF  +  +
Sbjct: 61  EYLNIIFQDDIKDGRLHLICGDALKVNFPKF------NKIVANIPYHISSPLLFKILEYE 114

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E   L+ Q E  ER+ A+  S  YGRLSV+  +  +A ++  +    F P P+V
Sbjct: 115 -----FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFRPVPRV 169

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S ++      +      + L +  ++ F +RRK +R  L  +             + R 
Sbjct: 170 DSAIVKIT-KKDRFCYDKDKLNEFVRKLFEQRRKKIRNILGEVPY----------GDRRV 218

Query: 262 ENLSIEDFCRITNI 275
           E LS E+ C +   
Sbjct: 219 EELSPEEICEVVQY 232


>gi|15220982|ref|NP_171690.1| PFC1 (PALEFACE 1); mRNA
           (2'-O-methyladenosine-N6-)-methyltransferase
           [Arabidopsis thaliana]
 gi|3005590|gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana]
 gi|26449914|dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
 gi|28827572|gb|AAO50630.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
 gi|332189223|gb|AEE27344.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
           thaliana]
          Length = 343

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 141/292 (48%), Gaps = 24/292 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +  HS    L+     P+K +GQ+++L+ +I  ++A ++   +G  V+EIG G G+LT +
Sbjct: 55  DDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNV 114

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------- 113
           L+ LGA  V+ IEKD     ++ +  +   ++ +++Q+D +K                  
Sbjct: 115 LINLGA-TVLAIEKDPHMVDLVSERFAG-SDKFKVLQEDFVKCHIRSHMLSILETRRLSH 172

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172
             S+  ++++NLP+NI T ++   +        +  + LL Q E   R+      +  Y 
Sbjct: 173 PDSALAKVVSNLPFNISTDVVKLLL---PMGDIFSKVVLLLQDEAALRLVEPALRTSEYR 229

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEA 229
            +++L  + ++    F +    FFP PKV + V+ F    P   P     ++   +   A
Sbjct: 230 PINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKNFFSLVNSA 289

Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           F  +RK LR+SL+ +      E  L  AG+    R E L+++DF ++ N++ 
Sbjct: 290 FNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLDDFVKLHNVIA 341


>gi|307353999|ref|YP_003895050.1| dimethyladenosine transferase [Methanoplanus petrolearius DSM
           11571]
 gi|307157232|gb|ADN36612.1| dimethyladenosine transferase [Methanoplanus petrolearius DSM
           11571]
          Length = 257

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 125/261 (47%), Gaps = 25/261 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL D + ++KIA  S      TV+EIG G G LT+ LL  GA KVI IE D +   IL
Sbjct: 7   QHFLTDPDAIRKIAHFSDI-KDQTVLEIGPGKGALTKELLERGA-KVIAIEIDPKMIEIL 64

Query: 87  KDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
               +      RL ++ +DA++ D+  F        +IANLPY+  +++ F  +      
Sbjct: 65  GSRFADEIDSGRLNLLNEDAVRCDYPDF------DIVIANLPYSASSKITFRLLEHG--- 115

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             ++   L++QKE   R+ A   + + GRLSV+     K   + ++ P  F P P V S 
Sbjct: 116 --FKEAVLMYQKEFALRMMALPGTSNCGRLSVMVQTYAKVMPLLNLPPEAFSPPPAVDSM 173

Query: 205 VIHFIPHLNP-IPCCLESLKK-ITQEAFGKRRKTLRQSLK---RLGGENLLHQA-----G 254
           V+          P         + +E F  RRKTL++SLK    + GE    +       
Sbjct: 174 VVRITMKEELTYPVDDPEFYSILVRELFSHRRKTLKKSLKSSRSVIGEKRYERIVSMLPD 233

Query: 255 IETNLRAENLSIEDFCRITNI 275
                RAE LS++DF  I+NI
Sbjct: 234 EMLKKRAEELSLKDFSNISNI 254


>gi|308160049|gb|EFO62557.1| Dimethyladenosine transferase [Giardia lamblia P15]
          Length = 319

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 104/238 (43%), Gaps = 10/238 (4%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
                 K  GQ+ L +  ++K I E +      TV+EIG G GNLT  LL   A+ VI +
Sbjct: 2   QGFELTKQHGQHLLANPLVIKSIVEKAEIRSTDTVLEIGPGTGNLTLALLE-KAKHVIAV 60

Query: 77  EKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           E D +    LK   +  P    +  +I  D  K+   +          ++N PYNI + +
Sbjct: 61  EIDPRMVSELKKRIAAIPEYRGKFTVIHKDFTKMPPNEI---PPFDLCVSNCPYNISSGI 117

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F  +     P  +    L+FQ E  +R+ A+     Y RL+V T   +K  ++  +S +
Sbjct: 118 VFRLLEIQPLPRKF---VLMFQLEFAQRLAAEPGQDQYSRLTVNTKLLSKTKIIIRVSRN 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            F P P V S V+   P   P    L+    +T+  F K+ KTL    K     N L 
Sbjct: 175 SFKPPPNVDSAVVEMYPVGPPPGLDLDEFNGLTRILFSKKNKTLGAIFKTRSLLNDLA 232


>gi|269123293|ref|YP_003305870.1| dimethyladenosine transferase [Streptobacillus moniliformis DSM
           12112]
 gi|268314619|gb|ACZ00993.1| dimethyladenosine transferase [Streptobacillus moniliformis DSM
           12112]
          Length = 273

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 126/267 (47%), Gaps = 13/267 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              KK  GQNFL D  +L+KI E +       +IEIG G G LT M+L  GA K+   E 
Sbjct: 10  HKHKKKFGQNFLDDKILLEKIKEVTNISVNDNIIEIGPGIGFLTSMILESGA-KLKSFEI 68

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D    P+L      + N  E+I  D L  + E         R+IAN+PY I   ++   +
Sbjct: 69  DNDLIPVLNKKFGNYEN-FELIHVDFLLYNLENIMGKGKEYRVIANIPYYITAPIINKLL 127

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               +    + + L+ QKEVGER+  +KN+ + G  + + G+ +K   +F +    F P 
Sbjct: 128 E---FKDNIKDIYLMVQKEVGERLNFEKNTSNKGVFTHVVGFHSKVEYLFTVEKEFFDPI 184

Query: 199 PKVTSTVIHF-IPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLL 250
           PKV S  I   I            E   K  + +F  +RK++  +LK +G      EN L
Sbjct: 185 PKVDSAFIRINIDKEEKYSKMISFEKYLKYVKASFASKRKSISNNLKTIGISKGITENAL 244

Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277
              G   N RAE LSIEDF  + NI+ 
Sbjct: 245 VFIGKNNNSRAEELSIEDFIALINIIE 271


>gi|33240213|ref|NP_875155.1| dimethyladenosine transferase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|62900571|sp|Q7VCH7|RSMA_PROMA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33237740|gb|AAP99807.1| Dimethyladenosine transferase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 279

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 123/269 (45%), Gaps = 11/269 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
             +P+K  GQ++L D +IL+KI  ++   +   ++EIG G G LT+ LL    + V  +E
Sbjct: 5   GHVPRKRFGQHWLRDDSILEKILLAADLQEEDRILEIGPGRGALTEKLLESNVKLVHGVE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D +    LK   +   +R  + + DAL V       I++  +++AN+PYNI   LL   
Sbjct: 65  LDAELIVGLKQRFAG-QSRFTLQEGDALSVSLLPHDGIAAN-KVVANIPYNITGPLLERL 122

Query: 138 ISA--DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           I     +    ++ L LL QKEV +RI A      +  +SV      K   + ++ P  F
Sbjct: 123 IGRLGRSSEVKYQRLVLLVQKEVAKRILALPGQSSFSAMSVRLQLLAKCQSVCEVHPSSF 182

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S VI   P              +  I Q AF  RRK LR +L ++   + L  
Sbjct: 183 SPQPKVYSEVIILDPLEKDERLDFLVERRVASIVQIAFLSRRKKLRNTLTKICPLDELEP 242

Query: 253 A----GIETNLRAENLSIEDFCRITNILT 277
                GI  N R + L+   + ++   L 
Sbjct: 243 LAYRQGINLNQRPQELAPMIWVQLARELE 271


>gi|169625150|ref|XP_001805979.1| hypothetical protein SNOG_15844 [Phaeosphaeria nodorum SN15]
 gi|111055562|gb|EAT76682.1| hypothetical protein SNOG_15844 [Phaeosphaeria nodorum SN15]
          Length = 378

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 12/238 (5%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K  S K   +H      K +GQ+ L +  +   I + +       V+E+G G GNLT ++
Sbjct: 19  KPTSAKASAAHSIFKMDKDLGQHILKNPGVASAIVQKAFLKQSDHVLEVGPGTGNLTVLI 78

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+ V  +E D +    L       P   RL+++  D +K +   F         I+
Sbjct: 79  LK-AAKAVTAVEMDPRMAAELTKRVQGTPEAKRLKVMLGDVIKTELPHF------DVCIS 131

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N PY I + L+F  +S  + P    S  L+FQ+E   R+ A+     Y RLSV      K
Sbjct: 132 NTPYQISSPLVFKLLSLPSPP---RSCILMFQREFAMRLFAKPGEKLYSRLSVNVQMWAK 188

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            + +  +  + F P P V S V+   P         E    + + AF ++ +TLR S 
Sbjct: 189 VSHIMKVGRNNFNPPPLVESNVVRIEPKFPRPQIAYEEWDGLLRIAFVRKNRTLRASF 246


>gi|289596434|ref|YP_003483130.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
 gi|289534221|gb|ADD08568.1| dimethyladenosine transferase [Aciduliprofundum boonei T469]
          Length = 243

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 115/254 (45%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL++  I   I + +       V+EIG G G LT  LL     +V  IE D+   
Sbjct: 8   RYSQNFLINPKIADYIVKEAEIKPNDIVLEIGPGKGILTGKLLEKC--EVYAIEIDKTLC 65

Query: 84  PILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L  I        RL +I  DALKV+F KF       +I+AN+PY+I + LLF  +  +
Sbjct: 66  EYLNIIFQDDIKDGRLHLICGDALKVNFPKF------NKIVANIPYHISSPLLFKILEYE 119

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E   L+ Q E  ER+ A+  S  YGRLSV+  +  +A ++  +    F P P+V
Sbjct: 120 -----FERGILMLQYEFAERLVAKPGSKRYGRLSVMMYYNGEARILKRVKRGNFRPVPRV 174

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S ++      +      + L +  ++ F +RRK +R  L  +             + R 
Sbjct: 175 DSAIVKIT-KKDRFCYDKDKLNEFVRKLFEQRRKKIRNILGEVPY----------GDRRV 223

Query: 262 ENLSIEDFCRITNI 275
           E LS E+ C +   
Sbjct: 224 EELSPEEICEVVQY 237


>gi|156055498|ref|XP_001593673.1| hypothetical protein SS1G_05101 [Sclerotinia sclerotiorum 1980]
 gi|154702885|gb|EDO02624.1| hypothetical protein SS1G_05101 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 383

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 16/239 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A+KVI +E 
Sbjct: 28  FKHNKDYGQHILKNPGVAEAIVKKANLKPTDTVLEVGPGTGNLTVRILES-AKKVIAVEV 86

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   RLE++  D +K +   F         I+N PY I + L+F 
Sbjct: 87  DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTELPHF------DVCISNTPYQISSPLVFK 140

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S    P       L+FQ+E   R+TA+     Y RLSV   +  K T +  +  + F 
Sbjct: 141 LLSLPNPP---RCSVLMFQREFALRLTARPGDSLYCRLSVNAQFFAKITHIMKVGKNNFR 197

Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           P P+V S+V+   P           E    + +  F ++ +T+R S   LG + +L   
Sbjct: 198 PPPQVESSVVRIEPKTGKERPGVSWEEWDGMLRICFVRKNRTMRASW--LGMKQVLAMC 254


>gi|281358611|ref|ZP_06245090.1| dimethyladenosine transferase [Victivallis vadensis ATCC BAA-548]
 gi|281314959|gb|EFA98993.1| dimethyladenosine transferase [Victivallis vadensis ATCC BAA-548]
          Length = 276

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 87/279 (31%), Positives = 131/279 (46%), Gaps = 12/279 (4%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               L   L    + P + +GQNFLLD N+L  I   S    G TV+E+G G G LT+ L
Sbjct: 2   NKQQLTAALESIGMRPGRGLGQNFLLDGNLLDYIVRLSAPQPGETVLEVGPGFGALTRKL 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L  GA  V  +E D +    L+       N   + + DA +V++ +      P R IANL
Sbjct: 62  LASGAD-VYAVEFDHRIAEYLRTHLEA--NNFHLTEADACRVNYLELLPQGRPFRAIANL 118

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY+I T  +   +     P   E++  + Q+E+GER+ A   +  YG LSV T  R +  
Sbjct: 119 PYSISTIFIARMLDLPAPP---EAMFFMLQREMGERLAAPVGTKDYGALSVRTQLRYEVK 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQSLKR 243
           +   + P VFFP P+V S ++ F  H            L  + +  F +RRK L + L  
Sbjct: 176 LEKIVPPEVFFPPPEVDSAIVSFRRHERYSADKELCRLLPGVVKTVFAQRRKQLGKLLSN 235

Query: 244 LGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278
             G+      L    I T  R + LS++ + ++T +L D
Sbjct: 236 NYGKEKALPALEALNIPTETRPDKLSVDQYAQLTRLLFD 274


>gi|254583294|ref|XP_002497215.1| ZYRO0F00308p [Zygosaccharomyces rouxii]
 gi|238940108|emb|CAR28282.1| ZYRO0F00308p [Zygosaccharomyces rouxii]
          Length = 319

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 14/243 (5%)

Query: 14  LSHYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
             H          +GQ+ L +  + + I + +      TV+E+G G GNLT  +L    R
Sbjct: 22  AKHLGSVFKFNTDLGQHILKNPLVAQGIVDKAQLRPSDTVLEVGPGTGNLTVRILEQ-VR 80

Query: 72  KVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           K   +E D +    L           +LEI+  D +K D   F         I+N PY I
Sbjct: 81  KAYAVEMDPRMAAELTKRVRGTDGERKLEILLGDFIKTDLPYF------DVCISNTPYQI 134

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + L+F  I+    P       L+FQ+E   R+ A+     Y RLS           +  
Sbjct: 135 SSPLVFKLINQPRPP---RVAVLMFQREFAMRLVARPGDALYCRLSANVQMWANVVHIMK 191

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           +S + F P P+V S+V+         P        + +  F ++ KT+    K     ++
Sbjct: 192 VSKNNFRPPPQVESSVVRLEIKNPRPPIEFNEWDGLLRIVFVRKNKTIAAGFKSSSVIDI 251

Query: 250 LHQ 252
           L +
Sbjct: 252 LEK 254


>gi|18978235|ref|NP_579592.1| dimethyladenosine transferase [Pyrococcus furiosus DSM 3638]
 gi|27151575|sp|Q8TH24|RSMA_PYRFU RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|18894050|gb|AAL81987.1| dimethyladenosine transferase (s-adenosylmethionine-6-n'
           [Pyrococcus furiosus DSM 3638]
          Length = 273

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 75/276 (27%), Positives = 129/276 (46%), Gaps = 27/276 (9%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
            LS Y   P+  +GQNFL+  +++ K  E+S       V+E+G G G LT  L    A K
Sbjct: 8   FLSKYNFSPRDKIGQNFLIMRDVIIKAVETSEIKKSDVVLEVGPGFGFLTDELSKR-AGK 66

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V  IE D++   IL++    +   +EIIQ DA+K+++ +F       ++++N+PY I + 
Sbjct: 67  VYAIELDKRIIEILEN--EYNWENVEIIQGDAVKIEWPEF------NKVVSNIPYQISSP 118

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
             F  +  D     +E   +++Q E  +R+ A+    +Y RLS++      A ++  I  
Sbjct: 119 FTFKLLKHD-----FEKAVVMYQLEFAKRMVAKPGDRNYSRLSLMVNALANAKIVMKIGR 173

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK------RLGG 246
             F+P PKV S ++  +P   P    +E  + + +  F  RRK + ++LK       +  
Sbjct: 174 GAFYPKPKVDSALVLIVPK--PKDERIELNENLVKALFQHRRKLVSKALKESCHMLGINK 231

Query: 247 ENLLHQAGI-----ETNLRAENLSIEDFCRITNILT 277
           + L     I         R   L+ E+   I   L 
Sbjct: 232 KELKTLKNILENVPHAKKRVFELTPEEVKEIEEFLK 267


>gi|213966088|ref|ZP_03394276.1| dimethyladenosine transferase [Corynebacterium amycolatum SK46]
 gi|213951286|gb|EEB62680.1| dimethyladenosine transferase [Corynebacterium amycolatum SK46]
          Length = 301

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 87/293 (29%), Positives = 134/293 (45%), Gaps = 32/293 (10%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ + +   I+P K +GQNF+ D N +++I  ++   +    +E+G G G+LT  LL  
Sbjct: 13  EVRDLAAQLDIVPTKKLGQNFVHDANTVRRIVAAADLPEDSYPVEVGPGLGSLTLGLLEH 72

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             R    +E D +    L    ++      LE+I+ DALKV  E F   ++P  ++ANLP
Sbjct: 73  CGR-AAAVEIDHRLAARLPQTVTERAEGCALELIEKDALKVSREDF--QTAPDALVANLP 129

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YN+   +L + ++     P    + ++ Q EV +R+ AQ  S  YG  SV   +      
Sbjct: 130 YNVSVPVLLHMLAE---LPTIRRVLVMVQSEVADRLAAQPGSKIYGVPSVKAAYYGTVRR 186

Query: 187 MFDISPHVFFPSPKVTSTVIHFI----------------PHLNPI---PCCLESLKKITQ 227
              I PHVF+P PKV S ++                   P   P    P     L  +  
Sbjct: 187 AGAIGPHVFWPVPKVDSGLVRIDCYARSDAPETSDVSGAPEAAPWEISPQFRARLFPLID 246

Query: 228 EAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
            AF +RRKTLR +L  + G        L  AGI+   R E L I DF R+  +
Sbjct: 247 AAFAQRRKTLRAALSGIYGSGAAAEEALMAAGIDPRQRGEKLEIADFVRLAEV 299


>gi|224437068|ref|ZP_03658049.1| dimethyladenosine transferase [Helicobacter cinaedi CCUG 18818]
 gi|313143541|ref|ZP_07805734.1| dimethyladenosine transferase dimethyltransferase [Helicobacter
           cinaedi CCUG 18818]
 gi|313128572|gb|EFR46189.1| dimethyladenosine transferase dimethyltransferase [Helicobacter
           cinaedi CCUG 18818]
          Length = 296

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 128/273 (46%), Gaps = 19/273 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              KK +GQNFL D + + KI +S  +L    V EIG G G+LTQ LL +    +I  E 
Sbjct: 6   HHAKKRLGQNFLQDSHYIHKIVQSIPTLPIQCV-EIGVGLGDLTQELLKIE--SLIAYEV 62

Query: 79  DQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D     +L +  S+     RL II +D L    ++ +  +   ++++NLPY I T ++  
Sbjct: 63  DLDLCSLLNEKFSKQIESGRLHIIYEDVLNRPSQQAWLHTQEYKVVSNLPYYIATHIIVR 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +       F     ++ QKEV ++  A+     +  LSVL      A ++FD+    F 
Sbjct: 123 LLHDR----FCRGFIVMTQKEVAQKFCAKSGEKEFCALSVLVESLGTAELLFDVPKEAFS 178

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLE----SLKKITQEAFGKRRKTLRQSLKRLGGEN---- 248
           P PKVTS+V  F+ H NP+    +     L+   + AF   RKTL ++L     +     
Sbjct: 179 PIPKVTSSV--FVIHKNPLQGNADFSLCDLEAFLKLAFCSPRKTLAKNLSLSFDKKSVEL 236

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            L  A ++ N RA  +  E F  I N L    D
Sbjct: 237 ALESANVKPNARAHEVKTESFHHILNTLKKGND 269


>gi|312194501|ref|YP_004014562.1| ribosomal RNA adenine methylase transferase [Frankia sp. EuI1c]
 gi|311225837|gb|ADP78692.1| ribosomal RNA adenine methylase transferase [Frankia sp. EuI1c]
          Length = 342

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 119/299 (39%), Gaps = 47/299 (15%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
             + P K  GQNFL+D N ++++   +G      V+E+G G G+LT  LL   AR+V+ +
Sbjct: 34  LDLRPTKRRGQNFLVDPNTVRRLVRLAGIGPDDVVLEVGPGIGSLTLGLLG-AARRVLAV 92

Query: 77  EKDQQFFPILK-----DISSQHPNRLEIIQDDALKVDFEKFFNISSP------------- 118
           E D      L       +      RL ++  DAL++                        
Sbjct: 93  EVDPALAAALPATAAARLDPATAGRLTVLTRDALRLVPADLPGEPDQPIGAAGPASASGV 152

Query: 119 -------------------IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
                                + ANLPYNI   LL   +      P  E   ++ Q EV 
Sbjct: 153 AGPASGAGAGSPGGAAGAPTVLAANLPYNIAVPLLLGLLER---FPSLERGLVMVQAEVA 209

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
           +R+T+      YG  SV   W   +     +   VF+P P V S ++ F     P P  L
Sbjct: 210 DRLTSPPGGRVYGVPSVKLAWYAGSRSAGAVPRSVFWPVPNVDSGLVAFTRRPAPAPSEL 269

Query: 220 ES-LKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRI 272
            + +      AF +RRKTLR +L    G     + L   AG++   R E L I  +CR+
Sbjct: 270 RADVFAAIDAAFAQRRKTLRTALAGWAGSPAAVDRLTRAAGVDPGARGETLDIAAYCRL 328


>gi|32490769|ref|NP_871023.1| hypothetical protein WGLp020 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340186|sp|Q8D3I1|RSMA_WIGBR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|25165975|dbj|BAC24166.1| ksgA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 261

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 94/259 (36%), Positives = 138/259 (53%), Gaps = 8/259 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P K +GQNFL D  I+KKI           +IEIG G G LT  +  + ++ +  IE 
Sbjct: 2   HKPIKKLGQNFLKDKKIIKKIINFINPKYKDKIIEIGPGLGALTIPISKI-SKSITAIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNW 137
           D+       + +    N L II  D +K++ +KFF+    P+RI  +LPYNI   L+FN+
Sbjct: 61  DKNLV-YFLNKNKNIKNNLNIINIDIMKLNLKKFFSSFCDPVRIFGSLPYNISVSLMFNF 119

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I           +  + QKEV +RI A+ N+ HYG +SV+  +      + DIS   F P
Sbjct: 120 IEN---YNKIIDMHFVIQKEVAQRILARPNNKHYGYISVIMQYYFYVEKLIDISNCAFKP 176

Query: 198 SPKVTSTVIHFIPHL-NPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            PKV S++I   PH   P P C ++ +K + + AF +RRK L+ SLK+      +    I
Sbjct: 177 IPKVQSSLIRMRPHKVCPFPFCDIDKMKVLLKSAFNQRRKMLKNSLKKYFSVEQIILYKI 236

Query: 256 ETNLRAENLSIEDFCRITN 274
              LRAENLSIE++C ++N
Sbjct: 237 NPKLRAENLSIENYCNLSN 255


>gi|50306253|ref|XP_453098.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|52788270|sp|P78697|DIM1_KLULA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49642232|emb|CAH00194.1| KLLA0D00594p [Kluyveromyces lactis]
          Length = 320

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+EIG G GNLT  +L   ARKV+ +E 
Sbjct: 29  FKFNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILEQ-ARKVVAVEF 87

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K +   F         I+N PY I + L+F 
Sbjct: 88  DPRMAAELTKRVHGTPVEKKLEILLGDFMKTELPYF------DVCISNTPYQISSPLVFK 141

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I+    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 142 LINQPKPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 198

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P PKV S+V+                  + +  F ++ +T+    K      +L +
Sbjct: 199 PPPKVESSVVRIEIKNPRPQVDFNEWDGLLRIVFVRKNRTIAAGFKSTTVLEILEK 254


>gi|189485764|ref|YP_001956705.1| dimethyladenosine transferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287723|dbj|BAG14244.1| dimethyladenosine transferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 265

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 19/262 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               ++  G+NFL D NI   I +++       V+EIG G G LT+++  L  + +  +E
Sbjct: 4   GKSMRQKDGKNFLTDNNIANNIIKAANLEKYDEVLEIGPGKGILTKIIQ-LQVKYLTAVE 62

Query: 78  KDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           KD+     L    S H  R ++II  D LK +       ++ ++II+NLPYN+GT ++  
Sbjct: 63  KDKILSQQLNHYFSFHGARNIKIINADFLKYNIP-----NTELKIISNLPYNVGTAIIQK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +        W +   + QKEV +R+ AQ  S  YG +S+ T + T   ++FD+S   F 
Sbjct: 118 ILPLK----HWTTAVFMLQKEVTQRLVAQPGSKAYGYISIFTSYYTDCKILFDVSSRCFS 173

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ------SLKRLGGENLL 250
           P PK+ S+VI      +             + AF  RRKT+        +L++    ++L
Sbjct: 174 PPPKIISSVIKLTNKASEP--TDPVFFDFVKHAFKTRRKTILNCLSSFKNLEKSKAAHIL 231

Query: 251 HQAGIETNLRAENLSIEDFCRI 272
           +   ++  LR + LSI DF R+
Sbjct: 232 NACALDPFLRPDKLSIPDFLRL 253


>gi|239981691|ref|ZP_04704215.1| dimethyladenosine transferase [Streptomyces albus J1074]
          Length = 267

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 18/268 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            + P K  GQNF++D N +++I  ++       V+E+G        + L   A+ V  +E
Sbjct: 2   GVRPTKQRGQNFVIDANTVRRIIRTADVRADDVVVEVGP-GLGSLTLGLLETAQHVTAVE 60

Query: 78  KDQQFFPIL-KDISSQHPNR---LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            D      L   + ++ P R     ++  DAL+V         +P  ++ANLPYN+   +
Sbjct: 61  IDDTLAAALPATVEARLPARAAHFALVHSDALRVTE---LPGPAPTALVANLPYNVAVPV 117

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L + +      P  E   ++ Q EV +R+ A   S  YG  SV   W  +      I  +
Sbjct: 118 LLHMLE---HFPTIERTLVMVQSEVADRLAAAPGSKVYGVPSVKANWYAEVKRAGAIGRN 174

Query: 194 VFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL-----GG 246
           VF+P+P V S ++  +    P       E +  +   AF +RRKTLR +L          
Sbjct: 175 VFWPAPNVDSGLVSLVRRDGPPATTATREQVFAVVDAAFAQRRKTLRAALSGWAGSAAAA 234

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITN 274
           E  L  AG+    R E+L++E+F  I  
Sbjct: 235 EAALVAAGVSPQARGESLTVEEFAAIAE 262


>gi|123455450|ref|XP_001315469.1| dimethyladenosine transferase family protein [Trichomonas vaginalis
           G3]
 gi|121898147|gb|EAY03246.1| dimethyladenosine transferase family protein [Trichomonas vaginalis
           G3]
          Length = 295

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 120/280 (42%), Gaps = 37/280 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQN L    ++K I ++     G  ++EIG G GN+T+ +L+    +VI IEK
Sbjct: 15  FKMDHSLGQNILRSKVVVKNIVDAGEPRPGDKILEIGPGNGNMTEEMLSREGIEVIAIEK 74

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           DQ+    LK    +HPN L II  D L VD  +F         I+N+PYNI + ++F  +
Sbjct: 75  DQRMCVELKKKFPRHPN-LRIINADVLSVDLPEF------DLCISNIPYNISSAIVFKLL 127

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +     P +    L+ QKE GERI A+     +GRL++ T       ++ ++S   F P 
Sbjct: 128 AR----PTFRRTVLMVQKEFGERIVARPGKDGWGRLAINTQLYASVKLVMNVSRKNFVPP 183

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG---- 254
           PKV S V+   P              + +  F +  +TL+ +  +     LL++      
Sbjct: 184 PKVDSIVVSIQPREVQPDIDFNEWDGLIKLCFTRPNRTLQATFHKKKIRALLNENREKYL 243

Query: 255 ----------------------IETNLRAENLSIEDFCRI 272
                                 +    R   L IEDF  +
Sbjct: 244 SSINQQATMSIEELIEYVLGTTVLAQSRPMELDIEDFLNL 283


>gi|257792392|ref|YP_003182998.1| ribosomal RNA adenine methylase transferase [Eggerthella lenta DSM
           2243]
 gi|257476289|gb|ACV56609.1| ribosomal RNA adenine methylase transferase [Eggerthella lenta DSM
           2243]
          Length = 347

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 132/343 (38%), Gaps = 75/343 (21%)

Query: 1   MTMNNKSHSL---KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT  +   S+   + +L  + +  K  +GQNFL++  IL+KI   +  +    V+E+G G
Sbjct: 1   MTKLSPLASVSETRAVLEAHGLSTKYSLGQNFLINDAILQKIVALADLVPDDYVLEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G LT  LL     +V+ +E+D     +L +  S   +R  ++  DAL +    F +   
Sbjct: 61  IGTLTVALLKS-VGRVLSVERDPDLPAVLAETLSPWADRFALLNKDALDLCSADFQSAEP 119

Query: 118 ------------------------------------------------PIRIIANLPYNI 129
                                                           P +++ANLPY +
Sbjct: 120 LDAAASRGARSRGEAQGSRTEVRSAFALPTISGTTETLADVAGPMRLLPNKLVANLPYAV 179

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              ++ ++          ES T++ QKEV +R+ A   + +YG  +V      +    F 
Sbjct: 180 AATVVLDYFERFA---SLESATVMVQKEVADRMAASPGTKNYGAYTVKLRLYAEPAGRFA 236

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL-------NPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           + P  FFP P+V S V+                   + +   + + AF  RRKTL  S K
Sbjct: 237 VGPGNFFPPPRVESAVLRLNRRPVFDDQGVPLDADAIAAACTMAEAAFATRRKTLSNSCK 296

Query: 243 RLGG-------------ENLLHQAGIETNLRAENLSIEDFCRI 272
                              L  +AGI+  LR E L + +F R+
Sbjct: 297 TYFAGRGPQGAAVIARLPQLFERAGIDPRLRGETLDLPEFVRL 339


>gi|154151411|ref|YP_001405029.1| dimethyladenosine transferase [Candidatus Methanoregula boonei 6A8]
 gi|153999963|gb|ABS56386.1| dimethyladenosine transferase [Methanoregula boonei 6A8]
          Length = 254

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 113/261 (43%), Gaps = 24/261 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D N +++IA  +   +   V+EIG G G LT+ LL  GA  V  +E D+     L
Sbjct: 7   QHFLIDKNAIERIAGCADVKEKE-VLEIGPGNGALTRALLDRGA-IVHAVELDRILCDEL 64

Query: 87  KDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            D   +      L +   DA K     F        +++NLPY+  +++ F  +      
Sbjct: 65  ADRFFEEIQKGTLTVTHGDATKCPLPPF------EMVVSNLPYSASSKITFRLLDLG--- 115

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             +    L++Q+E  ER+ A   +   GRLS++          F + P  F P P+V S 
Sbjct: 116 --FSVAVLMYQQEFAERMAAPAGTKDCGRLSIMVQTYATVQRCFTLPPACFSPKPQVHSM 173

Query: 205 VIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGG-------ENLLHQA-GI 255
           V+  +P          +    + +  F  RRKT+R  L+   G       + ++    G 
Sbjct: 174 VVKIVPRPPIFGVNDRKRYADVVRALFTHRRKTVRNGLRGSSGILAPEWTKRVIDALPGE 233

Query: 256 ETNLRAENLSIEDFCRITNIL 276
               R E L +EDF  I N +
Sbjct: 234 ILQSRPEELYLEDFATIANFV 254


>gi|313681244|ref|YP_004058982.1| dimethyladenosine transferase [Sulfuricurvum kujiense DSM 16994]
 gi|313154104|gb|ADR32782.1| dimethyladenosine transferase [Sulfuricurvum kujiense DSM 16994]
          Length = 259

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 114/263 (43%), Gaps = 18/263 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQNFL D  +L +I +S        + EIG G G+LT+ L  +  + V   E D 
Sbjct: 9   AKKKFGQNFLKDEAVLAQIIQSMPDTP-HRIAEIGPGLGDLTKYL--VDVKSVTAFEVDT 65

Query: 81  QFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
                L    +     N L +   D L+    +  +   P  ++ANLPY I T ++   +
Sbjct: 66  DLCKHLTHQFADAIATNALTLRCGDVLEHWKSELLD--EPYDLVANLPYYIATNIILKAL 123

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +     P   +L ++ Q+EV E+ +A      +G LSV+     +A ++  + P  F P+
Sbjct: 124 AD----PACRNLLVMIQREVAEKFSAAPGERAFGALSVIAQSVGEAEIVLHVPPTAFEPA 179

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAG 254
           PKV S V+      N      E  +   + AF + RKTL ++L                 
Sbjct: 180 PKVDSCVLLISKRTNR---NDEGFEDFLRTAFTQPRKTLHKNLSSRYDGTVLSQAFETLE 236

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           +E ++R   L   DF R+  ++ 
Sbjct: 237 LERSIRPHQLDTSDFHRLYTLIK 259


>gi|307128523|ref|YP_003880553.1| dimethyladenosine transferase [Candidatus Sulcia muelleri CARI]
 gi|306482985|gb|ADM89855.1| dimethyladenosine transferase [Candidatus Sulcia muelleri CARI]
          Length = 254

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 125/257 (48%), Gaps = 9/257 (3%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK +GQ FL D NI KKI  S    +   ++EIG G G LTQ  L L  + + +IE D++
Sbjct: 4   KKKLGQFFLHDKNIAKKIVNSISFKESKNIVEIGPGMGILTQY-LLLNNKNLFLIEIDKK 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +   LK       N   I   + L    + FF  S    +I N PYNI +++LF  I   
Sbjct: 63  YVSYLKMKYPIIKNN--IFHKNFLNWKPKDFFLYS--FTLIGNFPYNISSQILFYIIKYR 118

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            + P       +FQKEV +RIT++  + +YG+LSV+     K   +F ++  VF P P V
Sbjct: 119 EYIP---ECIGMFQKEVADRITSKHMNKNYGKLSVIMQTFYKIEYLFTVNNTVFRPKPNV 175

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S V+  +   N I        KI + AF  RRK L  SLK L      +Q  +    R 
Sbjct: 176 KSAVVRMLKKKNNINIKDSIFFKIVKTAFLYRRKKLYNSLKILSLSPDFYQNPL-LKKRV 234

Query: 262 ENLSIEDFCRITNILTD 278
           E LS+ DF  +T   ++
Sbjct: 235 EQLSVNDFILLTKYASN 251


>gi|126179901|ref|YP_001047866.1| dimethyladenosine transferase [Methanoculleus marisnigri JR1]
 gi|125862695|gb|ABN57884.1| dimethyladenosine transferase [Methanoculleus marisnigri JR1]
          Length = 257

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 28/264 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D   ++KIA       G  V+EIG G G LT+ LL   A  VI +E D      L
Sbjct: 7   QHFLVDRRAVEKIAGFVDVS-GRRVLEIGPGEGILTRALLDRDAD-VIAVEIDPALVEEL 64

Query: 87  KDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +   +      RLEII+ DA KVD   F        ++ANLPY++ +++ F  +      
Sbjct: 65  EIAFADEIGEGRLEIIRGDAKKVDIPPF------EIVVANLPYSVSSKITFRLLEIG--- 115

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             +E   L++QKE   R+ A   +P+ GRLSV+         + ++ P  F P P V S 
Sbjct: 116 --FEVAVLMYQKEFARRMVAPPGTPNVGRLSVMVQTYASVKPLLELGPGSFRPQPAVRSW 173

Query: 205 VIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE------- 256
           V+   PH  P P     +   + +  F  RRKT+R+ L+   G++      I        
Sbjct: 174 VVRITPHEPPYPIADRRVYADVVRVLFSHRRKTVRKGLRS--GKDAFSPEAIGRTIASLP 231

Query: 257 ---TNLRAENLSIEDFCRITNILT 277
                 R E+L++E+F  I N ++
Sbjct: 232 DDLLQRRPEDLTLEEFALIANKMS 255


>gi|126643017|ref|YP_001086001.1| S-adenosylmethionine-6-N'N'-adenosyl [Acinetobacter baumannii ATCC
           17978]
          Length = 187

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 5/185 (2%)

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
            HP RL I++ DALK DF +      P+R++ NLPYNI T LLF+ +    +    + + 
Sbjct: 2   PHPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHLLE---FGSQVKDMH 58

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
            + QKEV ERITA+ N+  YGRLSV+  +  + T +F++    F P PKVTS V   +P+
Sbjct: 59  FMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKVTSAVFRLVPY 118

Query: 212 LNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDF 269
                     ++L ++    F +RRKTLR SLK +  E+   +AG++   R E L++ +F
Sbjct: 119 EQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMARPETLTLAEF 178

Query: 270 CRITN 274
             + +
Sbjct: 179 VALAD 183


>gi|315230155|ref|YP_004070591.1| dimethyladenosine transferase [Thermococcus barophilus MP]
 gi|315183183|gb|ADT83368.1| dimethyladenosine transferase [Thermococcus barophilus MP]
          Length = 280

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 129/277 (46%), Gaps = 27/277 (9%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           ++LS Y +     +GQNFL+  +I+K+  E +      TV+EIG G G LT  L    A+
Sbjct: 8   SLLSKYNLRINSDLGQNFLIVDDIIKREVERAEIKANETVLEIGPGLGFLTDELSKY-AK 66

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           KV  +EKD +   IL+   S     +EII+ DALKV+F +F       +I++NLPY I +
Sbjct: 67  KVYAVEKDSRLVEILQKEYS--WKNVEIIRGDALKVEFPEF------DKIVSNLPYQISS 118

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            + F ++  D     ++   L++Q E  +R+TA+    +Y RLSV+   +    ++  I 
Sbjct: 119 PITFKFLRYD-----FKKAVLIYQLEFAQRMTAKPGDKNYSRLSVMVQAKADVELVERIG 173

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
              F+P PKV S VI   P   P    +E    + +  F  RRK   ++LK       L 
Sbjct: 174 RGAFYPKPKVDSAVIILNPK--PKEEQIELDDSLVKALFQHRRKKASKALKDSYHMLELT 231

Query: 252 QAGI-----------ETNLRAENLSIEDFCRITNILT 277
           +                  R   LSI +   I   L 
Sbjct: 232 KEKFKEIRRIFDKIPHAEKRVFQLSIWEIKDIEEFLR 268


>gi|45185713|ref|NP_983429.1| ACR026Wp [Ashbya gossypii ATCC 10895]
 gi|52782780|sp|Q75C90|DIM1_ASHGO RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|44981468|gb|AAS51253.1| ACR026Wp [Ashbya gossypii ATCC 10895]
          Length = 319

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKV+ +E 
Sbjct: 28  FKFNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQ-ARKVVAVEF 86

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K +   F         I+N PY I + L+F 
Sbjct: 87  DPRMAAELTKRVHGTPAEKKLEIMLGDFMKTELPYF------DICISNTPYQISSPLVFK 140

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I+    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 141 LINQPRPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHVMKVGRNNFR 197

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+         P        + +  F ++ +T+    K      ++ +
Sbjct: 198 PPPQVESSVVRIEIKTPRPPVDFNEWDGLLRIVFVRKNRTISAGFKSTAVLEIMEK 253


>gi|257388711|ref|YP_003178484.1| dimethyladenosine transferase [Halomicrobium mukohataei DSM 12286]
 gi|257171018|gb|ACV48777.1| dimethyladenosine transferase [Halomicrobium mukohataei DSM 12286]
          Length = 290

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 122/273 (44%), Gaps = 24/273 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           + +     +++           Q+FL+D  +L +I   +  +D   V+E+GAGPG LT  
Sbjct: 12  DGARDPDALVARAGKRADTRQDQHFLIDDRVLDRIPGYADQMDRSHVLEVGAGPGALTDR 71

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRII 122
           LL + A +V  IE+D  F   L++  +     +RL I++ DAL VD  +F         +
Sbjct: 72  LLAV-ADRVTAIERDPDFAAHLREEFADAIDADRLTIVEGDALDVDLPEFS------ASV 124

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           +NLPY   + + F  +      P  + L L+FQ+E  ER+ A   S  YGRLSV  G   
Sbjct: 125 SNLPYGASSEIAFRLL------PRGKPLVLMFQQEFAERMAADPGSDDYGRLSVTAGHYA 178

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL 241
              ++  + P  F P P+V S ++   P         +       +  F +RRKT+R ++
Sbjct: 179 DVEIVETVPPTAFDPQPRVDSAIVRLRPREPDYSVPDDDFFMDFLKGVFTQRRKTMRNAV 238

Query: 242 KRLG-------GENLLHQAGIET-NLRAENLSI 266
           +           + ++  A       RA  LS 
Sbjct: 239 RNTAHITDLGDPDAVVDAADESLMGKRAGELSP 271


>gi|302914906|ref|XP_003051264.1| hypothetical protein NECHADRAFT_41763 [Nectria haematococca mpVI
           77-13-4]
 gi|256732202|gb|EEU45551.1| hypothetical protein NECHADRAFT_41763 [Nectria haematococca mpVI
           77-13-4]
          Length = 332

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 18/246 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                  GQ+ L +  +   I E +      TV+E+G G GNLT  +L   A+K I +E 
Sbjct: 37  FKFNTNFGQHILKNPGVSDAIVEKAFLKPTDTVLEVGPGTGNLTVRILER-AKKCICVEV 95

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +LE++  D +K +  +F         I+N PY I + L+F 
Sbjct: 96  DPRMAAEVTKRVQGTPEQRKLEVLLGDVIKTELPQF------DVCISNTPYQISSPLVFK 149

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S    P    +  L+FQ+E   R+TA+     Y RLSV   +  K T +  +  + F 
Sbjct: 150 LLSLPNPP---RTSVLMFQREFALRLTARPGDALYCRLSVNAQFWAKITHIMKVGKNNFR 206

Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P P+V S+V+   P    +      +    + +  F ++ KTLR S   LG + +L  A 
Sbjct: 207 PPPQVESSVVRIEPKTGKDRPNVSWDEWDGLLRVCFVRKNKTLRASW--LGTKEVL--AM 262

Query: 255 IETNLR 260
           +E N R
Sbjct: 263 VERNYR 268


>gi|317490258|ref|ZP_07948746.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA]
 gi|325833365|ref|ZP_08165814.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1]
 gi|316910752|gb|EFV32373.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA]
 gi|325485289|gb|EGC87758.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1]
          Length = 347

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 132/343 (38%), Gaps = 75/343 (21%)

Query: 1   MTMNNKSHSL---KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT  +   S+   + +L  + +  K  +GQNFL++  IL+KI   +       V+E+G G
Sbjct: 1   MTKLSPLASVSETRAVLEAHGLSTKYSLGQNFLINDAILQKIVALADLAPDDYVLEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G LT  LL   A +V+ +E+D     +L +  +   +R  ++  DAL +    F +   
Sbjct: 61  IGTLTIALLKS-AGRVLSVERDPDLPAVLVETLAPWSDRFALLNKDALDLCSADFQSAEP 119

Query: 118 ------------------------------------------------PIRIIANLPYNI 129
                                                           P +++ANLPY +
Sbjct: 120 LDAAASRGARSRGEAEGSRTEVRSAFALPTISGTTETLADVAGPMRLLPNKLVANLPYAV 179

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              ++ ++          ES T++ QKEV +R+ A   + +YG  +V      +    F 
Sbjct: 180 AATVVLDYFEQFA---SLESATVMVQKEVADRMAASPGTKNYGAYTVKLRLYAEPAGRFA 236

Query: 190 ISPHVFFPSPKVTSTVIHFIPHL-------NPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           + P  FFP P+V S V+                   + +   + + AF  RRKTL  S K
Sbjct: 237 VGPGNFFPPPRVESAVLRLNRRPVFDDQGVPLDADAIAAACTMAEAAFATRRKTLSNSCK 296

Query: 243 RLGG-------------ENLLHQAGIETNLRAENLSIEDFCRI 272
                              L  +AGI+  LR E L + +F R+
Sbjct: 297 TYFAGRGPQGAAVIARLPQLFERAGIDPRLRGETLDLPEFVRL 339


>gi|198433957|ref|XP_002130387.1| PREDICTED: similar to transcription factor B1, mitochondrial [Ciona
           intestinalis]
          Length = 384

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 23/293 (7%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGA 70
            +L  Y +  +K + QNFLLD  I  +     +  L G  V E+G GPG +T+ +L    
Sbjct: 34  ELLKMYNVRARKQLSQNFLLDPLITNRFVLCGAKDLAGHHVCEVGPGPGPITRSILQRKP 93

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRI 121
            ++ V+EKD +F P+LK ++    +R+ I+  D LK D  + F           S P  +
Sbjct: 94  ERLTVVEKDHRFLPMLKYVADVSNDRMTIVHGDILKYDLSQCFPQELAKDWHKASPPFIV 153

Query: 122 IANLPYNIGTRLLFNWISADTWPP-----FWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             NLP+N+   L+F W    +            L L FQ+EV ER  AQ       RLSV
Sbjct: 154 FGNLPFNVSLPLIFKWFEQISRKDGMFKLGRIPLVLTFQREVVERFLAQTGDKQRCRLSV 213

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRK 235
                      F I+   F P PKV   V+  +P     I    + +  + +    ++ K
Sbjct: 214 SAQNFCDIDYKFIIAGGSFVPPPKVEVGVVKIVPKKTFDINLPFKKIDYVVKHTMHRKSK 273

Query: 236 TLRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             + S+K +         + +  ++G++   R+  L    F  +     +  D
Sbjct: 274 YCKHSVKTMFPPKRSDLVDEIFRKSGVDPLTRSNELENLHFRDLCYAYEEIAD 326


>gi|15790240|ref|NP_280064.1| dimethyladenosine transferase [Halobacterium sp. NRC-1]
 gi|169235969|ref|YP_001689169.1| dimethyladenosine transferase [Halobacterium salinarum R1]
 gi|27151602|sp|Q9HQH1|RSMA_HALSA RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|226732584|sp|B0R506|RSMA_HALS3 RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|10580702|gb|AAG19544.1| dimethyladenosine transferase [Halobacterium sp. NRC-1]
 gi|167727035|emb|CAP13821.1| rRNA (adenine-N6,N6-)-dimethyltransferase [Halobacterium salinarum
           R1]
          Length = 282

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 119/275 (43%), Gaps = 25/275 (9%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            ++      P     Q+FL+D  +L +I   +   D   V+EIGAG G LT  LL++ A 
Sbjct: 9   ALIRRAG-RPNPDFDQHFLIDDRVLDRIPTYADGFDRGHVLEIGAGTGALTDRLLSV-AD 66

Query: 72  KVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +V  +E+D+ +   L++  +       L+++  DAL VD   F         ++NLPY +
Sbjct: 67  RVTAVERDESYASFLREEFADAIAAGDLDVVAGDALAVDLPAF------TCAVSNLPYGV 120

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + + F  +      P  + + L++Q E  ER+ A   +  YGRLSV T      +++  
Sbjct: 121 ASEVTFRLL------PAGKPMVLMYQLEFAERMAADPGTSEYGRLSVATQHYADVSIVET 174

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGEN 248
           +    F P P+V S V+   P         E+      +  F +RRKT R +++     +
Sbjct: 175 VPAAAFDPQPRVESAVVRVTPRDPDYVVADEAFFLSFVKALFTQRRKTTRNAIRNTAHIS 234

Query: 249 LL--------HQAGIETNLRAENLSIEDFCRITNI 275
            L                 R  +LS   F  + N+
Sbjct: 235 GLDDPDAVVAAVDDDVLGTRPGSLSPATFAALANV 269


>gi|88604257|ref|YP_504435.1| dimethyladenosine transferase [Methanospirillum hungatei JF-1]
 gi|119365031|sp|Q2FSA9|RSMA_METHJ RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|88189719|gb|ABD42716.1| dimethyladenosine transferase [Methanospirillum hungatei JF-1]
          Length = 256

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/265 (31%), Positives = 129/265 (48%), Gaps = 28/265 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL D  I+ +IA+      G  V+EIG G G LT+ LL  GAR VI +E D+     L
Sbjct: 7   QHFLTDPRIVARIADILDIS-GRIVLEIGPGEGILTEALLERGAR-VISVELDRTLIERL 64

Query: 87  KDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
               +       L ++Q DA+KV    F        ++ANLPY+I + + F  +      
Sbjct: 65  SRRFASEIADGSLTLLQGDAVKVPLPPF------EIVMANLPYSISSPITFRLLDIG--- 115

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             +E+  L++QKE  +R+ A   +   GRLS++     +A   FD+ P  F P P V ST
Sbjct: 116 --FEAAILMYQKEFADRMMAHPGTRDCGRLSIMLQTYARANRCFDLPPGAFSPPPAVRST 173

Query: 205 VIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE------- 256
           V+   P     P    +  + + +E F +RRKT++ +LK L G  +  +  I+       
Sbjct: 174 VMWIEPREPLFPIHDRKIYEDLVRELFTRRRKTVQSTLKALAG--MFGKEKIDSVVRDLN 231

Query: 257 ---TNLRAENLSIEDFCRITNILTD 278
               + R E L +EDF  I+N L+ 
Sbjct: 232 PEILSSRPEALYLEDFATISNQLSS 256


>gi|312137230|ref|YP_004004567.1| dimethyladenosine transferase [Methanothermus fervidus DSM 2088]
 gi|311224949|gb|ADP77805.1| dimethyladenosine transferase [Methanothermus fervidus DSM 2088]
          Length = 283

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 136/293 (46%), Gaps = 29/293 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           +++  H  K IL  Y I   + +GQNFL++  I  KI   +      TV+EIG G G LT
Sbjct: 4   ISSLLHETKYILKKYNISLSRRLGQNFLINEYIRNKIINYANLNKKDTVLEIGPGIGTLT 63

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRI 121
             +    A+KVI IEKD +   ILKD       + +EII  DALK+ F KF       ++
Sbjct: 64  IPMAKY-AKKVIAIEKDCKMVEILKDRIHDLKIDNIEIINADALKIKFPKF------NKV 116

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           ++NLPY I + + F  ++ D     +    L++QKE  +R+ A+  + +Y RLSV+  ++
Sbjct: 117 VSNLPYTISSPITFKLLNYD-----FNLGVLMYQKEFAQRLIAKPGTSNYSRLSVMMYFK 171

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
               ++  I P  F P PKV S                   + + +  F  +RK  +++L
Sbjct: 172 ANVELLDIIPPKSFIPRPKVKSA--IVKIIPKKKFKINRFFENVCRALFQHKRKKSKKAL 229

Query: 242 ---------KRLGGENLLHQAGIETNL---RAENLSIEDFCRITNILTDNQDI 282
                     +   + +L +   +  L   R   L+  +  +I+  + ++  +
Sbjct: 230 IESSHELNMNKSKLKQILERL--DPKLAEKRVFKLTPNEILKISKFIEEHDKV 280


>gi|42573814|ref|NP_975003.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis
           thaliana]
 gi|10177517|dbj|BAB10912.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana]
 gi|332010821|gb|AED98204.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
           thaliana]
          Length = 380

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/241 (32%), Positives = 109/241 (45%), Gaps = 12/241 (4%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H  +   K  GQ+ L +  IL  I  SS      TV+EIG G GNLT  LL   A+ V+
Sbjct: 57  EHDGLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLE-AAQNVV 115

Query: 75  VIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            +E D++   IL+   S H   ++L IIQ D LK DF  F        ++AN+PYNI + 
Sbjct: 116 AVELDKRMVEILRKRVSDHGFADKLTIIQKDVLKTDFPHF------DLVVANIPYNISSP 169

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           L+   +        + S TLL QKE   R+ A      + RL+V          + D+S 
Sbjct: 170 LVAKLVYGSN---TFRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVKFVMDVSK 226

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
             F P PKV S+VI   P        ++     T+  FGK+ KTL    ++      L  
Sbjct: 227 REFVPPPKVDSSVIRITPKEIIPDVNVQEWLAFTRTCFGKKNKTLGSMFRQKKKVMELQS 286

Query: 253 A 253
            
Sbjct: 287 L 287


>gi|327542154|gb|EGF28647.1| rRNA adenine dimethylase [Rhodopirellula baltica WH47]
          Length = 326

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 136/288 (47%), Gaps = 30/288 (10%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L+   + P    GQNFL+DLN+++ IA S+       V+EIG G G+LT  ++   A  +
Sbjct: 38  LTAAGLRPVSKYGQNFLIDLNLVELIARSAEIGPSDIVLEIGTGVGSLTS-IMASQAGAI 96

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-------------DFEKFFNISSPIR 120
           + +E DQ  F +  +  +  P+ +++IQ DALK              + +      S   
Sbjct: 97  LTVEIDQNLFQLASEELAPFPH-VKMIQGDALKNKSTFRDDIMESIREAKSRLPDDSKFM 155

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPYN+ T ++ N +  D  P   + + +  QKE+GER+ A   S  YG LS+    
Sbjct: 156 LVANLPYNVATPIVSNLLHQDPPP---DRIVVTIQKELGERMVAGPGSKDYGALSIWIQA 212

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTL 237
             +A ++  + P VF+P PKV S ++         N IP  L+   +  +  F  RRK L
Sbjct: 213 TCRAEIVRILPPTVFWPRPKVDSAIVRLDVDHERRNAIP-DLKYFHQTVRALFFHRRKFL 271

Query: 238 RQS--------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           R          L +   + +L + G     RAE L++E    +   L 
Sbjct: 272 RSVVISAMKGRLDKPAIDEILGRLGHGETARAEELNLEQISELVEALR 319


>gi|292656864|ref|YP_003536761.1| dimethyladenosine transferase [Haloferax volcanii DS2]
 gi|291372487|gb|ADE04714.1| dimethyladenosine transferase [Haloferax volcanii DS2]
          Length = 287

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 25/261 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           Q+FL+D  ++ +I            V+EIG GPG LT  LL + A +V V+E+D+ F   
Sbjct: 34  QHFLVDDRVVDRIPTYLPEEADRSHVLEIGGGPGVLTDRLLGV-ADRVTVVEQDRTFAAH 92

Query: 86  LKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L+   +     +RL +++ DAL VD  +F         ++NLPY I + + F  +     
Sbjct: 93  LRREFADEVESDRLTVVEGDALDVDLPEF------TACVSNLPYGISSEISFRLL----- 141

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P  + L L+FQKE GER+ A+  +  YGRLSV T    +  +   +    F P P V S
Sbjct: 142 -PRGKPLVLMFQKEFGERMAAEAGTSEYGRLSVSTQHYGEVELCEHVPREAFDPKPAVQS 200

Query: 204 TVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLG-------GENLLHQAGI 255
            V+   P         E+      +  F +RRKT+R  ++           E ++  A  
Sbjct: 201 VVVRITPREPEYEVDDEAFFLDFVKALFTQRRKTIRNGIRNTAHISGLSDPEAVVEAADE 260

Query: 256 E-TNLRAENLSIEDFCRITNI 275
           +    RA N++  +F  +  +
Sbjct: 261 DVLRKRAGNMAPAEFAELAQL 281


>gi|297842936|ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335191|gb|EFH65608.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 342

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 141/293 (48%), Gaps = 24/293 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +  HS    L+     P+K +GQ+++L+ +I  ++A ++   +G  V+EIG G G+LT +
Sbjct: 54  DDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNV 113

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------- 113
           L+ LGA  V+ IEKD     ++ +  +   ++ +++Q+D +K                  
Sbjct: 114 LINLGA-TVLAIEKDPHMVDLVSERFAG-SDKFKVLQEDFVKCHIRSHMLSILESRRLSH 171

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172
             SS  ++++NLP+NI T ++   +        +  + LL Q E   R+      +  Y 
Sbjct: 172 PDSSLAKVVSNLPFNISTDVVKLLL---PMGDIFSKVVLLLQDEAALRLVEPALRTSEYR 228

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEA 229
            +++L  + ++    F +    FFP PKV + V+ F    P   P     ++   +   A
Sbjct: 229 PINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPSDYPDVSSTKNFFSLVNSA 288

Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           F  +RK LR+SL+ +      E  L  AG+    R E L+++DF ++ N++  
Sbjct: 289 FNGKRKMLRKSLQHISSSPEIEKALGVAGLPVTSRPEELTLDDFVKLHNVIAS 341


>gi|313157110|gb|EFR56540.1| dimethyladenosine transferase [Alistipes sp. HGB5]
          Length = 383

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 14/243 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A+++G  D   V+E+G G G LTQ LL          E D +    L     +   RL  
Sbjct: 152 AKAAGRCD---VLEVGCGMGVLTQFLLRRDDIVTYGAEIDPESVEYLHAHYPEFTPRL-- 206

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           ++ D LK++  + F     ++II N PYNI +++ F  +      P       + QKEV 
Sbjct: 207 MEGDFLKMNLRELFPGG--LKIIGNFPYNISSQIFFKVLENRDLVP---ECVGMIQKEVA 261

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPCC 218
            R+     S  YG LSVL         +F ++  VF P PKV S VI    + +  + C 
Sbjct: 262 VRLAEPPGSKEYGILSVLLQAWYDIEYLFTVNETVFNPPPKVKSAVIRLRRNGVERLACD 321

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-TNLRAENLSIEDFCRITNILT 277
                K+ + +FG+RRK +R SL+ + G      A       RAE LS+ DF  +T+ + 
Sbjct: 322 ETLFVKVVKASFGQRRKMIRNSLRSVFGN--FGGAEHPFFTQRAEQLSVADFVELTDWVA 379

Query: 278 DNQ 280
            N+
Sbjct: 380 ANR 382



 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 19 IIPKKYMGQNFLLDLNILKKIAESS 43
          +  KK +GQ+FL+DLNI +KI +S 
Sbjct: 4  VRAKKALGQHFLVDLNIARKICDSL 28


>gi|110668775|ref|YP_658586.1| dimethyladenosine transferase [Haloquadratum walsbyi DSM 16790]
 gi|118600870|sp|Q18GB5|RSMA_HALWD RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|109626522|emb|CAJ52985.1| dimethyladenosine transferase (rRNA methylation) [Haloquadratum
           walsbyi DSM 16790]
          Length = 296

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/267 (29%), Positives = 120/267 (44%), Gaps = 25/267 (9%)

Query: 25  MGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             Q+FL+D  +L +I      S D   ++EIGAG G LT  LL +G   V VIE+D    
Sbjct: 41  FDQHFLIDDRVLDRIPTYLLDSTDTTHILEIGAGTGALTDRLLAVG-DTVTVIERDATLA 99

Query: 84  PILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L++  +      RL II+ DAL+V    F         I+NLPY I + +LF  + AD
Sbjct: 100 AFLREEFAVMIDDGRLNIIEGDALEVTLPAF------TTCISNLPYGISSEILFELLPAD 153

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                   L ++ Q+E GER+ A   +  YGRLSV         ++  + P  F P P V
Sbjct: 154 CP------LIVMVQREFGERMAADPGTDAYGRLSVSAQHYATVEVVETVPPTAFAPEPAV 207

Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL- 259
            S +I   P         E+   +  +  F +RRKT+R +++     ++L       N  
Sbjct: 208 DSALIRAEPRDPDYTVTDETFFLRFVKAVFTQRRKTVRNAIRNTAHISMLDTPDAVVNAA 267

Query: 260 -------RAENLSIEDFCRITNILTDN 279
                  RA +L+  +F  +  I  + 
Sbjct: 268 DEALLSQRAGDLTPSEFAELATIAAEK 294


>gi|300711086|ref|YP_003736900.1| dimethyladenosine transferase [Halalkalicoccus jeotgali B3]
 gi|299124769|gb|ADJ15108.1| dimethyladenosine transferase [Halalkalicoccus jeotgali B3]
          Length = 277

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 26/266 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           Q+FL+D  +L ++   + ++D     V+EIGAGPG LT  L  + A +V  +E+D     
Sbjct: 21  QHFLIDDRVLDRLPTYATAIDADLSHVLEIGAGPGALTDRLCRV-ADRVTAVERDPDLVS 79

Query: 85  ILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            L+   +       L +++ DAL V   +F         ++NLPY + +++ F       
Sbjct: 80  FLRREFADEIADGTLSVVEGDALDVSLPEF------TACLSNLPYGVSSQIAFRLF---- 129

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             P    L L+FQ+E  ER+ A+ N+P YGRLSV         ++  +    F P P V 
Sbjct: 130 --PRKRPLVLMFQREFAERMVAEPNTPEYGRLSVSAQHYADPEIVETVPKEAFSPPPAVE 187

Query: 203 STVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLG-------GENLLHQAG 254
           S ++   P         E+   +  +  F +RRKTLR +++  G        + ++  A 
Sbjct: 188 SALVRARPRDPEYTVSDEAFFLRFVKALFTQRRKTLRNAIRNTGHISGLEDPDAVVEAAD 247

Query: 255 IET-NLRAENLSIEDFCRITNILTDN 279
            +    RA  L+  +F  +  +  + 
Sbjct: 248 EDLMGRRAGTLAPTEFAALCELALER 273


>gi|255560978|ref|XP_002521501.1| dimethyladenosine transferase, putative [Ricinus communis]
 gi|223539179|gb|EEF40772.1| dimethyladenosine transferase, putative [Ricinus communis]
          Length = 366

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 111/223 (49%), Gaps = 12/223 (5%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   S      TV+EIG G GNLT  LL + ARKV+ +E D++ 
Sbjct: 55  KSKGQHLLTNPRVLDTIVRRSAVEPTDTVLEIGPGTGNLTLRLLEV-ARKVVAVEIDKRM 113

Query: 83  FPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IL++ +S+    ++L+II  DALK +F  F        ++AN+PY I + L+   +  
Sbjct: 114 VEILRERASEQGLQDKLDIIHKDALKAEFPNF------NIVVANIPYGISSPLVTKLVYG 167

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 + SLTLL QKE   R+ A    P Y RL+V          + D+S   F PSPK
Sbjct: 168 VNK---FRSLTLLLQKEFARRLLANPGDPEYNRLAVNVKLVADVEFVMDVSKRDFVPSPK 224

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
           V S+V+   P        L   +  T+  FG + KTL    K+
Sbjct: 225 VDSSVVIIRPKTEIPSVNLVEWRAFTRTCFGNKNKTLGAIFKQ 267


>gi|304372921|ref|YP_003856130.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma
           hyorhinis HUB-1]
 gi|304309112|gb|ADM21592.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma
           hyorhinis HUB-1]
 gi|330723491|gb|AEC45861.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Mycoplasma hyorhinis MCLD]
          Length = 257

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 127/265 (47%), Gaps = 15/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D  ++ KI E + S D    +EIG G G +T  LL   A+ ++  E 
Sbjct: 4   IQAKKKFGQNFLKDDFVINKIIELANSQDEDA-LEIGPGTGAITIPLLES-AKSLLAYEI 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     L++      ++  +  +D L+ D     + ++P  ++ANLPY I +++LF   
Sbjct: 62  DKDLIVCLENKIK--SSKFMLKNEDFLEAD----LDFTTPKILVANLPYYITSQILFKVF 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   ++S+ ++ Q+EV +RI A++ +  + +LS+             I P  F P 
Sbjct: 116 ENVNK---FKSMLIMVQEEVADRIVAKEKTSAFSKLSLACQLVADVKKELKILPSSFSPQ 172

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----G 254
           PKV S ++ F    N  P  ++     T++ F  +RKT   +L     +  + +      
Sbjct: 173 PKVNSALVSFKFKKNLNPEYIKGFLDFTKKCFSMKRKTFYNNLSTFLNQEKIKELYVKFN 232

Query: 255 IETNLRAENLSIEDFCRITNILTDN 279
           +  N+R + +S+  + +I + + ++
Sbjct: 233 LNYNIRPQQISLNQYIQIYDFIKNS 257


>gi|156838911|ref|XP_001643153.1| hypothetical protein Kpol_449p12 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113749|gb|EDO15295.1| hypothetical protein Kpol_449p12 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 319

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKV+ +E 
Sbjct: 29  FKFNTDLGQHILKNPLVAQGIVDKANIKPSDIVLEVGPGTGNLTVRILEQ-ARKVVAVEM 87

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K +   F         I+N PY I + L+F 
Sbjct: 88  DPRMAAELTKRVHGTPAEKKLEIMLGDFMKTELPYF------DICISNTPYQISSPLVFK 141

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I+    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 142 LINQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGRNNFR 198

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+                  + +  F ++ +T+    K      +L +
Sbjct: 199 PPPQVESSVVRIEIKNPRPEVDFNEWDGLLRIVFVRKNRTIAAGFKSTSVLEILEK 254


>gi|320166640|gb|EFW43539.1| dimethyladenosine transferase 1 [Capsaspora owczarzaki ATCC 30864]
          Length = 412

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 88/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
            S ++  ++  Y +  K  + QNF+LDLN+  ++  +   L    VIE+G+GPG LT+ +
Sbjct: 7   PSVAVADLIRLYGLSAKSQLSQNFILDLNVTNRLI-APAKLKDAIVIEVGSGPGALTRSI 65

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------NI 115
           L  G +KV  IEKD++F P L+ ++     R++++  D L +D+ K              
Sbjct: 66  LEAGPKKVFAIEKDRRFLPSLQLLAEAAEGRMQVVHHDILTLDYTKLLAPLVKPQPWSEP 125

Query: 116 SSPIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
           S+ + II NLP+NI TRLL +      +    +      L   FQ EV ERI A+  +  
Sbjct: 126 SNGVYIIGNLPFNISTRLLVDLVHDCRLKRGVFGFGRTHLLFTFQHEVAERIVAKPGTSD 185

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEA 229
             RLS+L      A   + +   VF P PKV    ++F P   P+    + S++ + Q  
Sbjct: 186 RSRLSLLVQHAFAARYHYHMPNTVFVPPPKVQVGGVYFAPLEQPMTAAPIASVELVAQHI 245

Query: 230 FGKRRKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             +R K +   + RL G        LL QA I    R  N+S E F  + +    +
Sbjct: 246 LNQRGKFISNGVGRLVGGNADIALQLLEQAKIPPTTRVSNVSTEQFAALVDAYEAH 301


>gi|297797749|ref|XP_002866759.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297312594|gb|EFH43018.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 376

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 108/231 (46%), Gaps = 12/231 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H  +   K  GQ+ L +  IL  I   S      TV+EIG G GNLT  LL   A+ V+
Sbjct: 50  EHDGLFLCKSKGQHLLTNTRILDAIVRCSDVRPTDTVLEIGPGTGNLTMKLLE-AAQDVV 108

Query: 75  VIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            +E D++   IL+   S H   ++L IIQ D LK DF +F        ++AN+PYNI + 
Sbjct: 109 AVELDKRMVEILRKRVSDHGFAHKLTIIQKDVLKTDFPQF------DLVVANIPYNISSP 162

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           L+   +        + S TLL QKE   R+ A      + RL+V          + D+S 
Sbjct: 163 LVAKLVYGSN---TFRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVKFVMDVSK 219

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             F P PKV S+V+   P        ++     T+  FGK+ KTL    ++
Sbjct: 220 REFVPPPKVDSSVVMITPKEIIPDVNVQEWLAFTRTCFGKKNKTLGSMFRQ 270


>gi|312221933|emb|CBY01873.1| similar to dimethyladenosine transferase dimethyltransferase
           [Leptosphaeria maculans]
          Length = 379

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 23/266 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K +GQ+ L +  +   I + +       V+E+G G GNLT ++L   A+ V  +E 
Sbjct: 32  FKMDKDLGQHILKNPGVASAIVQKAYLKQSDHVLEVGPGTGNLTVLILK-AAKAVTAVEM 90

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L           RL+++  D +K +   F         I+N PY I + L+F 
Sbjct: 91  DPRMAAELTKRVQGTAEAKRLKVMLGDVIKTELPHF------DVCISNTPYQISSPLVFK 144

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S  + P    S  L+FQ+E   R+ A+     Y RLSV      K + +  +  + F 
Sbjct: 145 LLSLPSPP---RSCILMFQREFAMRLFAKPGEKLYSRLSVNVQMWAKVSHIMKVGRNNFN 201

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P+V S V+   P         +    + + AF ++ +TLR S         L  +   
Sbjct: 202 PPPQVESNVVRIEPKHPRPQIAYDEWDGLLRIAFVRKNRTLRASFLGTAAVVELLASNYR 261

Query: 257 TNLRAENLSIEDFCRITNILTDNQDI 282
                       FC   +IL D+  I
Sbjct: 262 L-----------FCAQNDILLDDSPI 276


>gi|258542093|ref|YP_003187526.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633171|dbj|BAH99146.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636228|dbj|BAI02197.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639283|dbj|BAI05245.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642337|dbj|BAI08292.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645392|dbj|BAI11340.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648447|dbj|BAI14388.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651500|dbj|BAI17434.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654491|dbj|BAI20418.1| dimethyladenosine transferase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 214

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 84/212 (39%), Positives = 120/212 (56%), Gaps = 6/212 (2%)

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           +L   A  V  +E D +   ++++++  +PNRL++++ DALK D  +     +P +IIAN
Sbjct: 1   MLNGPAESVTAVELDSRAVLVIQELAGFYPNRLKVVEADALKCDLTEL--CPAPRQIIAN 58

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+ T LL  W+        WE LTL+FQ EV ERI A  NS HYGRL+VL  W    
Sbjct: 59  LPYNVATPLLIGWLRQGNA---WERLTLMFQLEVAERICAAPNSEHYGRLAVLAQWCADC 115

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            ++  + P  F P P V S V    PH   P P   ++++++T  AFG+RRK LR +LK 
Sbjct: 116 AIVMKLPPGAFSPPPAVWSAVASITPHAQQPEPALFKAMERVTAAAFGQRRKMLRGALKG 175

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
           L G  LL  A I+   RAE L + +F R+   
Sbjct: 176 LNGYKLLAAADIDGTRRAETLDVAEFDRLARA 207


>gi|300707711|ref|XP_002996053.1| hypothetical protein NCER_100912 [Nosema ceranae BRL01]
 gi|239605315|gb|EEQ82382.1| hypothetical protein NCER_100912 [Nosema ceranae BRL01]
          Length = 278

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 33/275 (12%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
              K +GQ+ L ++  +  I E +       ++EIG G GNLT  ++    +K+I  E D
Sbjct: 5   KFNKDLGQHILKNMGAIDTILEKAKIKPTDVILEIGGGTGNLTLKMIP-KCKKLICYEMD 63

Query: 80  QQFFPILKDISS---QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            +    L    +   ++ N+ ++   DA+K DF  F         I+NLPY I +  +F 
Sbjct: 64  PRLASELVKKINANREYANKFQLFIGDAMKHDFPYF------DMCISNLPYQISSPFIFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++ +     ++   ++FQKE  +R+ A+  S  Y RLSV      +   +  I  + F 
Sbjct: 118 LLTYN-----FKCAYIMFQKEFADRLIARPGSQDYCRLSVSVQLLAQVDHILKIKKNSFV 172

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL---HQA 253
           P PKV S V+   P +       E    + +  F ++ KTL  + +       L    + 
Sbjct: 173 PPPKVESAVVRIEPKIPKPVINFEDFDALLKICFLRKNKTLLANFRGSAFMKTLKTKKRL 232

Query: 254 GIET---------------NLRAENLSIEDFCRIT 273
            I+                + RA  +  +DF  + 
Sbjct: 233 EIDEGEKLIKEILQNLDFSSKRATKMDTDDFLELY 267


>gi|122937785|gb|ABM68619.1| AAEL010575-PA [Aedes aegypti]
          Length = 266

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 109/266 (40%), Gaps = 40/266 (15%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           + +G      V+EIG G GN+T  LL    +KV+  E D +    L+      P  ++L+
Sbjct: 3   DKAGLRPTDVVLEIGPGTGNMTVKLLE-KVKKVVACEIDPRLVAELQKRVQGTPMQSKLQ 61

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           I+  D LK D   F         +AN+PY I +  +F  +      PF+    L+FQ E 
Sbjct: 62  ILIGDVLKADLPFF------DCCVANMPYQISSPFVFKLL---LHRPFFRCAVLMFQLEF 112

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +R+ A+     Y RLSV T    +  M+  +  + F P PKV S+V+   P     P  
Sbjct: 113 AQRLVAKPGDKLYCRLSVNTQLLARVDMLMKVGKNNFRPPPKVESSVVRIEPRNPSPPIN 172

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-------------------------- 252
                 +T+ AF ++ KTL  + K+      L Q                          
Sbjct: 173 YTEWDGLTRIAFLRKNKTLAAAFKQTSVMTALEQNFKMQCSLKNQDLPEGFSIKEKVEGI 232

Query: 253 -AGIETNL-RAENLSIEDFCRITNIL 276
            A I+    RA  + I+DF  + +  
Sbjct: 233 LAKIDAGAKRARTMDIDDFMAVLHAF 258


>gi|299116859|emb|CBN74971.1| chloroplast dimethyladenosine synthase (Partial) [Ectocarpus
           siliculosus]
          Length = 433

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 124/263 (47%), Gaps = 16/263 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLTLGARKVIVI 76
             PK+ +GQN+L D N + KI    G     G  V+E+G G G LTQ+L       +  +
Sbjct: 134 FRPKQSLGQNYLSDQNYVMKICNHFGDTSEGGRRVLELGPGTGALTQVLHERFPDML-AV 192

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLF 135
           + DQ+   +L      +   L  +  D L++D+ K   +   P+ +I NLPY+I +++LF
Sbjct: 193 DIDQRAIELL----GSNMPSLNAVMSDVLQLDYTKLAELRGGPLSVIGNLPYHITSQILF 248

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
                           +  Q EV +RI A+ ++  YG LSV+     +  ++F I P VF
Sbjct: 249 TLCD---HYQSVRRAVVTMQLEVAQRIVAKSSTKQYGILSVVFQLYARPQVLFQIPPTVF 305

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLHQA 253
           +P P VTS +I               LK +   AF +RRK LRQSLK L   G+ L  + 
Sbjct: 306 YPQPSVTSALISLDFTGKGPGVNQACLKSVLSSAFQQRRKMLRQSLKPLLRAGQKLPEEF 365

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
                 R E L  ++F  +T  +
Sbjct: 366 ---ATRRPEQLEPQEFVELTRAV 385


>gi|224143306|ref|XP_002324910.1| predicted protein [Populus trichocarpa]
 gi|222866344|gb|EEF03475.1| predicted protein [Populus trichocarpa]
          Length = 386

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 118/250 (47%), Gaps = 12/250 (4%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  IL  I   S      TV+EIG G GNLT  LL + A KV+ +E D++ 
Sbjct: 58  KSKGQHLLTNQRILDSIVRKSSINPTDTVLEIGPGTGNLTLKLLDV-ASKVVAVEIDKRM 116

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +L     +H   ++L +I++DALK +F KF        ++AN+PY I + L+   +  
Sbjct: 117 VGVLNKRVKEHGFEDKLSVIREDALKAEFPKF------DLVVANIPYGISSPLVAKLVYG 170

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 + S TLL QKE   R+ A+     + RL+V          + ++S   FFP PK
Sbjct: 171 ANP---FRSATLLLQKEFARRLLAKPGDSEFNRLAVNVKLVADVEFVMNVSKRDFFPVPK 227

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           V S+V+   P        L+     T+  FGK+ KTL  + K+      L +    T+  
Sbjct: 228 VDSSVVIIRPKDRIPDVNLDEWWAFTKNCFGKKNKTLGATFKQKKKVIELFRLSKMTSSN 287

Query: 261 AENLSIEDFC 270
            E ++   + 
Sbjct: 288 GEEINRNQYV 297


>gi|255541450|ref|XP_002511789.1| dimethyladenosine transferase, putative [Ricinus communis]
 gi|223548969|gb|EEF50458.1| dimethyladenosine transferase, putative [Ricinus communis]
          Length = 338

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 138/295 (46%), Gaps = 25/295 (8%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           + ++   +LK + S     P+K +GQ+++L+  + +++  ++   +G  V+EIG G G+L
Sbjct: 48  SSDDYRATLKALNSR-GRRPRKSLGQHYMLNSEVNEQLVCAANVEEGDLVLEIGPGTGSL 106

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-----------DFE 110
           T +LL  GA  V+ IEKD     I+++  S H +R +++Q+D +K            +  
Sbjct: 107 TNLLLDTGA-TVLAIEKDAHMAAIVRERFS-HTDRFKLLQEDFVKCHIRFHMLSLLENMT 164

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSP 169
                    +++AN+P+NI T ++   +           + LL Q+E   R+      + 
Sbjct: 165 SLNEKPRRAKVVANIPFNISTDVVKQLL---PMGDIISEVALLLQEETASRLVESSLRTS 221

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKIT 226
            Y  ++V   + +     F +    FFP P V + V+ F        P     +S   + 
Sbjct: 222 EYRPINVFVNFYSDPVYKFKVPRSNFFPQPNVDAAVVTFKLKQTADYPAVSSSKSFFSLV 281

Query: 227 QEAFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
             AF  +RK LR+SL+ +      E  L   G+    R E L+++DF ++ N++ 
Sbjct: 282 NSAFNGKRKMLRRSLQHICTSPEIEQALINVGLPATSRPEELTLDDFVKLHNLIA 336


>gi|330508534|ref|YP_004384962.1| dimethyladenosine transferase [Methanosaeta concilii GP-6]
 gi|328929342|gb|AEB69144.1| dimethyladenosine transferase [Methanosaeta concilii GP-6]
          Length = 247

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 22/262 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQ+FL+D +I+  I   +       V+EIG G G LT+ L    A +V  +E D    
Sbjct: 2   RLGQHFLIDRSIVDSIVSHADLGLEDWVLEIGPGEGILTRELAAR-AGRVYAVEIDPDLA 60

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L + +      + +I  DAL V   ++       +I++NLPYNI +++ +  +S    
Sbjct: 61  ASLCNTAP----NVMVIHADALTVRLPQY------NKIVSNLPYNISSKITYRLLSRP-- 108

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              ++   L+FQKE  +R+ A+  S  YGRL ++ G+ +   ++ ++S   F P P V S
Sbjct: 109 ---FDLAVLMFQKEFAQRLKAEPASKIYGRLGMVAGFFSHIEILQNVSRKAFRPVPDVDS 165

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNL 259
            ++   P          +  ++    F  RRK +++ L   G + +    L Q+ I  N+
Sbjct: 166 AIVRLRPRTERPQVDPRAFMRLADILFRNRRKKVKKGLAAYGVDKMTLAELDQSLI--NM 223

Query: 260 RAENLSIEDFCRITNILTDNQD 281
           R E L+ +    +   +    D
Sbjct: 224 RPEELTPDQVAGLILAIEKKSD 245


>gi|124360236|gb|ABN08249.1| SAM (and some other nucleotide) binding motif [Medicago truncatula]
 gi|124360864|gb|ABN08836.1| SAM (and some other nucleotide) binding motif [Medicago truncatula]
          Length = 349

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 140/295 (47%), Gaps = 24/295 (8%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T  +  H+    L+     PKK +GQN++L+ +I +++   +G  +G  V+EIG G G+L
Sbjct: 58  TNKDDYHATLKALNSKGRSPKKSLGQNYMLNSDINEQLVGVAGVEEGDVVLEIGPGTGSL 117

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----------FE 110
           T  L+  GA  V+ +EKD+    ++ +  S    +L+++ +D +K              E
Sbjct: 118 TNTLINSGA-FVLAVEKDKHMAALVSERFSST-GKLKVLNEDIVKCHVRSHISSLVGSTE 175

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSP 169
              + +   +++AN+P+ I T ++   +        +  + LL Q+E   R       +P
Sbjct: 176 DIDSDTRKAKVVANIPFYISTDVIKLLL---PMGDIFSEVVLLLQEETALRWVEPSLRTP 232

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKIT 226
            Y  +++   + +     F ++   FFP P V + V+ F    P   P     +S   + 
Sbjct: 233 EYRPINIFVNFYSDPEYKFKVARTNFFPQPNVDAAVVSFKLKQPSEYPQVSSNKSFFSMV 292

Query: 227 QEAFGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
             AF ++RK +R+SL+ +      E  L   G+ +  R E L+++DF ++ N +T
Sbjct: 293 NSAFNEKRKMIRKSLQHICTSLEIEEALESIGLLSTSRPEELTLDDFVKLHNSIT 347


>gi|296394635|ref|YP_003659519.1| dimethyladenosine transferase [Segniliparus rotundus DSM 44985]
 gi|296181782|gb|ADG98688.1| dimethyladenosine transferase [Segniliparus rotundus DSM 44985]
          Length = 285

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 132/278 (47%), Gaps = 17/278 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +    ++ P K +GQNF+ D   +++I  ++G     +V+EIG G G+LT  LL +
Sbjct: 14  DIRELAERLEVRPTKRLGQNFVHDPGTIRRIVAAAGLRPQDSVLEIGPGLGSLTLGLLDV 73

Query: 69  GARKVIVIEKDQQFFPIL-KDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            A  V  +E D +    L   I+++ P R   +++ DAL +        ++P  ++ANLP
Sbjct: 74  -AHDVTAVEVDGKLADALSSTIAARAPGRQFHLVEKDALGLTGADL--PAAPTALVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YN+   +    ++     P  ++  ++ Q EVG+R+ A+  +   G  ++ T +   A +
Sbjct: 131 YNVAVPVFLRALAE---LPSIDNALVMVQLEVGQRLAAKPGAREGGVPTLKTAFYGHAEL 187

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE----SLKKITQEAFGKRRKTLRQSLK 242
              ISP VF+P P V S ++ F    +      E    ++  +   AF  RRKTL   LK
Sbjct: 188 AGKISPEVFWPQPNVDSALVRFTRRADSPWATDEHTRRAVFALIDAAFASRRKTLGAVLK 247

Query: 243 RLGGE-----NLLHQAGIETNLRAENLSIEDFCRITNI 275
              G        L  AG+  + R E L I  F  + + 
Sbjct: 248 GWAGSPEELRRRLEAAGVPGSARGEELHIGQFVALASA 285


>gi|257452467|ref|ZP_05617766.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R]
 gi|317059008|ref|ZP_07923493.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R]
 gi|313684684|gb|EFS21519.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R]
          Length = 271

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 121/268 (45%), Gaps = 17/268 (6%)

Query: 19  IIPKKYMGQNFLLDL-NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL     IL KI E S       ++EIG G G LT++LL   A+ V+ IE
Sbjct: 3   FQHKKKYGQNFLTRQTEILAKIMEVSEVNSEDCILEIGPGEGALTELLLQE-AKSVLNIE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+   PIL+        +  ++  D L+V+F ++       +++AN+PY I + ++   
Sbjct: 62  IDEDLKPILQKKFGNI-EKYRLVMGDVLEVNFAEYMQEG--TKVVANIPYYITSPIIQKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I   +     ++  L+ QKEVGERI A+K       L++   +  K   +F I    F P
Sbjct: 119 IENRS---LIQAAFLMVQKEVGERICAKKG-KERSALTLSVEYFAKPEYLFTIPKEYFTP 174

Query: 198 SPKVTSTV--IHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            PKV S    I             E+   K  +  F  +RK L  +   LG      +  
Sbjct: 175 IPKVDSAFIGIRMKKEEEIAKQAPETLFFKYVKAGFFNKRKNLANNFLALGFTKAEIKEK 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           L   GI    RAENLS+ED+  +   L 
Sbjct: 235 LAILGISETERAENLSLEDWFSVIKALE 262


>gi|304315447|ref|YP_003850594.1| dimethyladenosine transferase [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588906|gb|ADL59281.1| predicted dimethyladenosine transferase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 273

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 26/285 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M       + +L  Y +  ++ +GQN+L+D    ++I           V+EIGAG G LT
Sbjct: 1   MTGLYRETRDVLRKYGVRLRRSLGQNYLVDDGKRQRILGYGNLGPDDHVLEIGAGIGTLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             +  L A  V  IE D     IL D      + ++II  DALKVDF  F       +++
Sbjct: 61  LPMAEL-AGHVTAIESDPFIAGILADRIKG--DNVDIIVGDALKVDFPAF------NKVV 111

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           +NLPY I + + F  +  +     +E   L++QKE   R+ A+  +  Y RLSV+  +  
Sbjct: 112 SNLPYQISSPVTFRLLRHE-----FELGVLMYQKEFAARMVAEPGTRDYSRLSVMLHFLA 166

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR----KTLR 238
           +  ++  + P  FFP P+V S V+   P    +P      + + +  F  R+    K+LR
Sbjct: 167 EVQIVDYLKPGCFFPRPRVDSAVVTVRPTGFSLPA---LFEDVCRALFQHRKKKTSKSLR 223

Query: 239 QSLKRLGGENLL-HQAGIETN----LRAENLSIEDFCRITNILTD 278
           +S   +  +        +  +     R   L  E+   IT  + +
Sbjct: 224 ESFHEIKADLDFSEVLDVLPSEILEKRVFQLKPEEILEITERMEE 268


>gi|254468186|ref|ZP_05081592.1| dimethyladenosine transferase [beta proteobacterium KB13]
 gi|207086996|gb|EDZ64279.1| dimethyladenosine transferase [beta proteobacterium KB13]
          Length = 253

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/262 (33%), Positives = 127/262 (48%), Gaps = 12/262 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL+D  I+K I +     +    +EIG G G LT  L     + + +IE 
Sbjct: 2   IKAKKKFGQNFLIDNQIIKLIVDEIKFSETNKYLEIGPGMGALTSELQK-NTKNLDLIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     IL   S++  +  +I + D L      F        ++ NLPY I T ++F +I
Sbjct: 61  DPDMIKIL---SAKINSTTQIFEGDVLGFSDNFF---EGYNVVLGNLPYYIATEIIFRFI 114

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             +      + L  + QKEV +R+ A+  S     L+ L G+  +A   FDI P  F PS
Sbjct: 115 PINN----VDILYFMVQKEVADRLVAKTGSKENSILTNLLGFNFRAEKCFDIKPESFDPS 170

Query: 199 PKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKVTS+ I    H + I        K+I +E+F  +RK L+ +LK +   N      I  
Sbjct: 171 PKVTSSFIKLTRHRDYINEIRYVDYKRIIKESFKFKRKNLKNNLKGVLNLNDFENLEILP 230

Query: 258 NLRAENLSIEDFCRITNILTDN 279
             RAE+LSIEDF +IT  +  N
Sbjct: 231 TNRAEDLSIEDFIKITKYVITN 252


>gi|226480668|emb|CAX73431.1| DIM1 dimethyladenosine transferase 1-like protein [Schistosoma
           japonicum]
          Length = 313

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 109/241 (45%), Gaps = 11/241 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +    I  +   GQ+ L +  ++  + E SG     +V+EIG+G GNLT  LL  G RKV
Sbjct: 13  MKTGGIRFQTTKGQHILKNPLVITTMIEKSGIKSTDSVLEIGSGTGNLTVKLLEKG-RKV 71

Query: 74  IVIEKDQQFFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
              E D +    L+      P+R  LEI+  DA+K      F++      +ANLPY I +
Sbjct: 72  YAFEIDPRLVSELQKRVQTSPHRSKLEILVGDAVKATSWPKFDLC-----VANLPYKISS 126

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             +   I A      + +  ++FQKE  +R+TA+     Y RLS    +  K   +  IS
Sbjct: 127 PFIQRLIHAGR---GFRAAVVMFQKEFADRLTAKPGDKVYCRLSASAQFHFKIEQLMKIS 183

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P P+V S V+   P     P        + +  F ++ KT+  +L      + L 
Sbjct: 184 RNSFRPPPRVDSAVVRIEPRHPLPPVMHSEWDGLLRLVFARKNKTIGANLGGKSIASHLR 243

Query: 252 Q 252
           +
Sbjct: 244 K 244


>gi|310793644|gb|EFQ29105.1| dimethyladenosine transferase [Glomerella graminicola M1.001]
          Length = 378

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/274 (27%), Positives = 125/274 (45%), Gaps = 27/274 (9%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  +   I   +      TV+EIG G GNLT  +L   ++K+I IE 
Sbjct: 30  FKFNTNVGQHILKNPGVADAIVHKAELKPTDTVLEIGPGTGNLTVRILE-KSKKLIAIEF 88

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +LE++  DA+KVD+  F        +I+N PY I + L+F 
Sbjct: 89  DPRMAAEVTKRVQGTPEQRKLEVMLGDAIKVDWVPF------DVLISNTPYQISSPLVFK 142

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ E G+R+ A+     YGRLSV   +    + +  +S   F 
Sbjct: 143 MLAMPKPP---RQAILMFQLEFGQRLVAKPGDKLYGRLSVNANFWATCSNVMKVSKANFR 199

Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
           P P+V S V+  +P           E    + +  F ++ +T+R S   LG + +L    
Sbjct: 200 PPPQVDSCVVRIVPKQGAERPTIAFEEFDGLLRICFNRKNRTMRASW--LGTKEVLQ--M 255

Query: 255 IETNLRA----ENLSIEDFCRITNILTDNQDIAI 284
           +E N R      N+ ++D      ++ D++D A+
Sbjct: 256 LEKNYRTWAAMNNVPLDD-----TLVEDDEDEAM 284


>gi|294055275|ref|YP_003548933.1| ribosomal RNA adenine methylase transferase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614608|gb|ADE54763.1| ribosomal RNA adenine methylase transferase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 274

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 14/278 (5%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M     S + +L     +P K +GQNFL+D NI++K  E +   +G +V+E+G G G LT
Sbjct: 1   MPLNPTSTRELLEALDHLPNKKLGQNFLVDGNIVRKSIELAEIDEGSSVVEVGPGLGTLT 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIR 120
           + +L  GA K+  +E+D      L+D         ++ + D L             S  +
Sbjct: 61  RAILGSGA-KLWAVERDSTLAEYLRDKVVPQQPNFDLTEGDCLDHPRAGLPEELAESGFK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           I+ANLPY + T     W+ A    P  + + L+ QKE  +R  A     ++G +S+    
Sbjct: 120 IVANLPYAVSTP----WMEAIISGPLPQRMVLMLQKEAADRYIADSGIKNFGAISIFLQA 175

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
              A     +S + F P+PKV S ++      N +    E+ +   +  F +RRK L   
Sbjct: 176 AYHAHSKHLVSANCFHPAPKVDSILLRLDLKENAVQFNAET-RACIRRIFTQRRKQLGAL 234

Query: 241 LKRLGGE------NLLHQAGIETNLRAENLSIEDFCRI 272
            K+   E      + L + G    +R E +   ++  +
Sbjct: 235 CKKDPYEPAKAWFDSLVEKGYSPTVRPEAIPHHEWVSL 272


>gi|72080979|ref|YP_288037.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae 7448]
          Length = 250

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 118/258 (45%), Gaps = 15/258 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D  I +KI E+        +IEIG G G LT  LL   A+ V   E D+   PI
Sbjct: 2   GQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLER-AKFVTCYEIDRNLIPI 59

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L+         L II +D L               IIANLPY I +++LF   +      
Sbjct: 60  LEKKFKNK--NLRIINEDFL----LAELEFKEKKTIIANLPYYITSKILFKIFANFEK-- 111

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            ++ + L+ Q EV +RI A+  +P Y +LS+ + +      +F + P  FFP PKV S V
Sbjct: 112 -FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIADVKKLFVVGPDSFFPKPKVNSAV 170

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIETNLRA 261
           + F    N     +E     T++ F  +RKTL  +L     +  + +         N+R 
Sbjct: 171 VLFDFRENLEAKKMEEFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFAQNIRP 230

Query: 262 ENLSIEDFCRITNILTDN 279
           + L +  + R+ +   +N
Sbjct: 231 QQLDLVTYIRLADFYFNN 248


>gi|78499686|gb|ABB45840.1| hypothetical protein [Eutrema halophilum]
          Length = 310

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 108/244 (44%), Gaps = 14/244 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +   K  GQ+ L +  IL  I   S      TV+EIG G GNLT  LL   A+ V+ +E
Sbjct: 44  GLFLHKSKGQHLLTNNRILDAIVRISDVRPTDTVLEIGPGTGNLTMKLLE-AAQNVVAVE 102

Query: 78  KDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D++   IL    + H   ++L IIQ D LK DF +F        ++AN+PYNI + L+ 
Sbjct: 103 IDKRMVEILGKRVADHGLEDKLTIIQKDVLKTDFPQF------DLVVANIPYNISSPLVA 156

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +        + S TLL QKE   R+ A      + RL+V          + D+S   F
Sbjct: 157 KLVYGSNA---FRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVQFVMDVSKREF 213

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P PKV S+++   P        ++     T+  FG + KTL    ++   + ++     
Sbjct: 214 VPPPKVDSSLVIIRPKEVKPDVDVQEWLAFTRTCFGNKNKTLGSMFRQ--KKKVIELLNF 271

Query: 256 ETNL 259
               
Sbjct: 272 SAGR 275


>gi|159906054|ref|YP_001549716.1| dimethyladenosine transferase [Methanococcus maripaludis C6]
 gi|226732596|sp|A9AAW1|RSMA_METM6 RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|159887547|gb|ABX02484.1| dimethyladenosine transferase [Methanococcus maripaludis C6]
          Length = 263

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 23/269 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K +GQ FL D N +KK    +   D   V+E+G G G LT+ L  L A+KV VIE D++
Sbjct: 4   SKKLGQCFLKDKNFVKKAINRAEITDKDIVLEVGLGEGALTKELAKL-AKKVYVIELDER 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P   +I+S+  N +EII  DALKVD +         +I+ANLPY I + + F ++  D
Sbjct: 63  LKPFADEITSEFEN-VEIIWSDALKVDLKNL----GFNKIVANLPYQISSPITFKFLEED 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E+  L++Q E  +R+  + ++  Y RLSV   +      +  + P  F P P V
Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172

Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL---------KRLGGENLLH 251
            S ++             E    K+ +  F  R +T++++L         +R   + +L 
Sbjct: 173 NSAIVKLTKRKPKYSVKDEKFFKKVLKALFQHRNRTIKRALIDSSHEIEIERDALKEILE 232

Query: 252 --QAGIETNLRAENLSIEDFCRITNILTD 278
             ++  +   R      E    ++N+L D
Sbjct: 233 KIESEFDFTERVFKTPPEKIGHLSNLLYD 261


>gi|13358166|ref|NP_078440.1| dimethyladenosine transferase [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|6899612|gb|AAF31015.1|AE002158_13 dimethyladenosine transferase [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
          Length = 257

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 128/261 (49%), Gaps = 17/261 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFLL  NI  KI + +       ++EIG G G +T++L+      +I IE D++ +  
Sbjct: 2   GQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEILV-QKTNILIAIELDKRLYAH 60

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNIS------SPIRIIANLPYNIGTRLLFNWIS 139
           LK       +   II +D L VD +              I+++ANLPY I ++++   I 
Sbjct: 61  LKTYIKT--SNFHIINNDVLCVDLDNLILDYNNTQKIQKIKVVANLPYAISSKIVLKIIQ 118

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           +           ++ QKE+ ERI A+ N+  Y   +VL     K  ++F+++   F P P
Sbjct: 119 SK----LINDAYIMVQKEMAERIGAKVNTRGYNAFTVLVQLFCKTKILFEVNAKEFHPQP 174

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI---- 255
           KV S VIH     N +   +E L K  +  F  +RK L+ +L  +    +++Q  I    
Sbjct: 175 KVQSAVIHLENLHNSVNFNIEELGKFLRICFLNKRKKLKNNLSNIYDIKIINQMFIDYNL 234

Query: 256 ETNLRAENLSIEDFCRITNIL 276
           + NLRAEN+  + F ++ N L
Sbjct: 235 DMNLRAENIEPKMFLKLFNYL 255


>gi|86152390|ref|ZP_01070600.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86154129|ref|ZP_01072328.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|157415933|ref|YP_001483189.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|315125095|ref|YP_004067099.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840687|gb|EAQ57939.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85842369|gb|EAQ59585.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|157386897|gb|ABV53212.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748571|gb|ADN91841.1| Dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315018817|gb|ADT66910.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931321|gb|EFV10290.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 266

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 127/265 (47%), Gaps = 14/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   +V   E 
Sbjct: 2   VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D    PILK    +     +  +I  DA +           P  ++ANLPY + + ++  
Sbjct: 59  DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ Q+E+ E+  A++ +  +  L VL+    +  M+FD+ P  F 
Sbjct: 117 ALEDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKMLFDVDPQCFN 172

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    +   +L   
Sbjct: 173 PPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G++ N+R   + ++ + +I + L D
Sbjct: 233 GLKENIRPHEICVDSYLKIYDKLKD 257


>gi|255712883|ref|XP_002552724.1| KLTH0C11704p [Lachancea thermotolerans]
 gi|238934103|emb|CAR22286.1| KLTH0C11704p [Lachancea thermotolerans]
          Length = 322

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 95/236 (40%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKVI +E 
Sbjct: 29  FKFNTDLGQHILKNPLVAQGIVDKAQIKPSDVVLEVGPGTGNLTVRILEQ-ARKVIAVEM 87

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L           +L+I+  D +K D   F         I+N PY I + L+F 
Sbjct: 88  DPRMGAELTKRVHGTAGEKKLDILLGDFMKTDLPYF------DICISNTPYQISSPLVFK 141

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I+    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 142 LINQPKPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 198

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+                  + +  F ++ +T+    K      +L +
Sbjct: 199 PPPQVESSVVRLEIKNPRPKVEFNEWDGLLRIVFVRKNRTIAAGFKSTTVLEILEK 254


>gi|256085330|ref|XP_002578875.1| dimethyladenosine transferase [Schistosoma mansoni]
 gi|238664262|emb|CAZ35113.1| dimethyladenosine transferase, putative [Schistosoma mansoni]
          Length = 313

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 124/284 (43%), Gaps = 31/284 (10%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +    I  +K  GQ+ L +  ++  + E SG     +++EIG+G GNLT  LL  G RKV
Sbjct: 13  IKTGGIRFQKTKGQHILKNPLVINTMVEKSGIKSTDSLLEIGSGTGNLTVKLLEKG-RKV 71

Query: 74  IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
              E D +    L+       H  +LEI+  DA+K      F++      IANLPY I +
Sbjct: 72  YAFEIDPRMVSELQKRVQTSLHRTKLEILVGDAIKAKSWPKFDLC-----IANLPYKISS 126

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             +   ISA      + +  ++ QKE  +R+TA+     Y RLS    +  K   +  I+
Sbjct: 127 PFIQRLISA---GHGFRAAVVMLQKEFADRLTAKSGDKLYCRLSASAQFHFKIEQLMKIN 183

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
            + F P P+V S V+   P     P        + +  F ++ KT+  +       + L 
Sbjct: 184 RNSFRPPPRVDSAVVRIEPRHPLPPVMHSEWDGLLRLVFARKNKTIGANFSGKSIASHLR 243

Query: 252 QA--------GIETNLRAENL--------SIEDFCRITNILTDN 279
           +         G+      E +        ++E+  +ITNIL D+
Sbjct: 244 KIYMETCCTKGLSPT--PEAIACESTGVSAMEE--KITNILRDS 283


>gi|50293399|ref|XP_449111.1| hypothetical protein [Candida glabrata CBS 138]
 gi|52782776|sp|Q6FKY3|DIM1_CANGA RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|49528424|emb|CAG62081.1| unnamed protein product [Candida glabrata]
          Length = 317

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   ARKV+ +E 
Sbjct: 28  FKFNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQ-ARKVVAVEM 86

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K +   F         I+N PY I + L+F 
Sbjct: 87  DPRMAAELTKRVHGTPAEKKLEIMLGDFMKTELPYF------DICISNTPYQISSPLVFK 140

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I+    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 141 LINQPRPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGRNNFR 197

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+                  + +  F ++ +T+    K      +L +
Sbjct: 198 PPPQVESSVVRIEIKNPRPQIDFNEWDGLLRIVFVRKNRTISAGFKSTTVLEILEK 253


>gi|313228791|emb|CBY17942.1| unnamed protein product [Oikopleura dioica]
          Length = 318

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 126/287 (43%), Gaps = 42/287 (14%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            GQ+ L +  +++ + E +G L   T++EIG G GN+T  LL    +KVI +E D++   
Sbjct: 37  YGQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVA 95

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            ++      P  ++L II  DALK +   FF++     ++ANLPY I + + F  +    
Sbjct: 96  EVQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLL---L 146

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             P +    L+FQKE  +R+ AQ     Y RLSV      +   +  +  + F P PKV 
Sbjct: 147 HRPMFRVAVLMFQKEFADRLVAQPGDKIYSRLSVAVQSLARVDRILKVGKNNFKPPPKVE 206

Query: 203 STVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRK-------------TLRQSL------ 241
           STV+   P   P+P          + +  FG++ +             TL ++       
Sbjct: 207 STVVRIEPRRPPLPINFTQGEWDSMLRICFGRKNRIMKGEFTNKKVLETLEKNFQTHCSL 266

Query: 242 --KRLGGENLLHQAGIET-------NLRAENLSIEDFCRITNILTDN 279
             K L  +    +  IE          RA  + ++DF ++     + 
Sbjct: 267 QNKSLPMDFDFKELVIEAVESSDMAEKRARQMDLDDFMKLLAAFNER 313


>gi|257466334|ref|ZP_05630645.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917491|ref|ZP_07913731.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691366|gb|EFS28201.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 271

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 121/268 (45%), Gaps = 17/268 (6%)

Query: 19  IIPKKYMGQNFLLDL-NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              KK  GQNFL     IL KI E S       ++EIG G G LT++LL   A+ V+ IE
Sbjct: 3   FQHKKKYGQNFLTRQTEILAKIMEVSEVNSEDCILEIGPGEGALTELLLQE-AKSVLNIE 61

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+   PIL+        +  ++  D L+V+F ++       +++AN+PY I + ++   
Sbjct: 62  IDEDLKPILQKKFGNI-EKYRLVMGDVLEVNFAEYMQER--TKVVANIPYYITSPIIQKI 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           I   +     ++  L+ QKEVGERI A+K       L++   +  K   +F I    F P
Sbjct: 119 IENRS---LIQAAFLMVQKEVGERICAKKG-KERSALTLSVEYFAKPEYLFTIPKEYFTP 174

Query: 198 SPKVTSTV--IHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLG-----GENL 249
            PKV S    I             E+   K  +  F  +RK L  +   LG      +  
Sbjct: 175 IPKVDSAFIGIRMKKEEEIAKQVPETLFFKYVKAGFFNKRKNLANNFLALGFTKAEIKEK 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           L   GI    RAENLS+ED+  +   L 
Sbjct: 235 LATLGISETERAENLSLEDWFSVIKALE 262


>gi|260655277|ref|ZP_05860765.1| dimethyladenosine transferase [Jonquetella anthropi E3_33 E1]
 gi|260629725|gb|EEX47919.1| dimethyladenosine transferase [Jonquetella anthropi E3_33 E1]
          Length = 278

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 113/260 (43%), Gaps = 11/260 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           + + +  +GQNFL +  ++ +    +   +  TV+EIGAG G LT  LL   AR V   E
Sbjct: 20  RFVHRTQLGQNFLANGAVIDRAVARAELREDETVLEIGAGQGVLTSALLASPARFVHSFE 79

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D++    L  +     +RL +   D +     +   +  P  ++AN+PY+I T L++  
Sbjct: 80  IDRRLEQWLAPLEC---SRLALHWGDVMSFPLAELDPL--PTAVVANIPYHITTPLIWKV 134

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +  +  P     L LL QKE  ER+ A   +     L V       A     +SP  F P
Sbjct: 135 LE-ELAPRGLTRLVLLVQKEAAERLCAPPRTKARYPLGVTIEAMGNAETFMKVSPGSFVP 193

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG-----GENLLHQ 252
            PKV S ++H               +++ ++AF +RRK    SL+  G            
Sbjct: 194 PPKVWSALVHIQLVRRHELALNALWRRLLRDAFAQRRKKALNSLEAAGRNKEETARAFQD 253

Query: 253 AGIETNLRAENLSIEDFCRI 272
             I  N RAE L+ + +  +
Sbjct: 254 CSISPNARAEELTTDQWLAL 273


>gi|121612576|ref|YP_001001355.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006244|ref|ZP_02272002.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249040|gb|EAQ72002.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 266

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 127/266 (47%), Gaps = 14/266 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   +V   E 
Sbjct: 2   VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D    PILK    +     +  +I  DA +           P  ++ANLPY + + ++  
Sbjct: 59  DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ QKE+ E+  A++ +  +  L VL+    +  ++FD+ P  F 
Sbjct: 117 ALEDKNCL----GLIVMVQKEMAEKFCAKEGNGEFSSLGVLSAMICERKILFDVDPQCFN 172

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    +   +L   
Sbjct: 173 PPPKVISAVMSLIKTKDFNELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G++ N+R   + ++ + +I + L D 
Sbjct: 233 GLKENIRPHEICVDSYLKIYDKLKDK 258


>gi|313215231|emb|CBY42886.1| unnamed protein product [Oikopleura dioica]
          Length = 289

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 14/232 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            GQ+ L +  +++ + E +G L   T++EIG G GN+T  LL    +KVI +E D++   
Sbjct: 26  YGQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVA 84

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            ++      P  ++L II  DALK +   FF++     ++ANLPY I + + F  +    
Sbjct: 85  EVQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLL---L 135

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             P +    L+FQKE  +R+ AQ     Y RLSV      +   +  +  + F P PKV 
Sbjct: 136 HRPMFRVAVLMFQKEFADRLVAQPGDKIYSRLSVAVQSLARVDRILKVGKNNFKPPPKVE 195

Query: 203 STVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           STV+   P   P+P          + +  FG++ + ++           L +
Sbjct: 196 STVVRIEPRRPPLPINFTQGEWDSMLRICFGRKNRIMKGEFTNKKVLETLEK 247


>gi|256389803|ref|YP_003111367.1| dimethyladenosine transferase [Catenulispora acidiphila DSM 44928]
 gi|256356029|gb|ACU69526.1| dimethyladenosine transferase [Catenulispora acidiphila DSM 44928]
          Length = 306

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 126/282 (44%), Gaps = 21/282 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF++D N +++I  +        V+E+G G G+LT  LL
Sbjct: 24  PAEVRRLAEKLGVSPTKKLGQNFVIDPNTIRRIVRAGDVTAEDVVVEVGPGLGSLTLGLL 83

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN-------RLEIIQDDALKVDFEKFFNISSPI 119
            + AR+V+ +E D      L D  ++            E+++ DAL++        S P 
Sbjct: 84  DV-ARRVVAVEIDPVLAAALPDTLAEFAPGIAAGQAEFELVRADALRI---AELPGSPPT 139

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            ++ANLPYN+   +L + +      P  E   ++ Q EV +R+ A+     YG  SV   
Sbjct: 140 ALVANLPYNVAVPVLLHMLER---FPSIERTLIMVQSEVADRLAAEPGGRVYGVPSVKAR 196

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
           W         I   VF+P+P V S ++       P         +      AF +RRKTL
Sbjct: 197 WYADVKRAGAIGRSVFWPAPNVDSGLVRLDRRAVPPSTKAGRRDVFAAVDAAFAQRRKTL 256

Query: 238 RQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRITN 274
           R +L    G        L  AGI  + R E L++E+F R+  
Sbjct: 257 RSALSGWAGSPAAAETALTAAGINPSARGETLTVEEFARLAE 298


>gi|226492680|ref|NP_001151385.1| LOC100285018 [Zea mays]
 gi|195646350|gb|ACG42643.1| dimethyladenosine transferase [Zea mays]
          Length = 337

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 22/287 (7%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            +++++ S  + +P+K +GQN+ L+  + +++  ++G  DG  V+EIG G G+LT  LL 
Sbjct: 54  STIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEDGDVVLEIGPGTGSLTSALLQ 113

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD---------ALKVDFEKFFNISSP 118
            GA  V  +EKD+    ++KD       +L++I++D          L    EK+      
Sbjct: 114 AGA-TVFAVEKDKHMATLVKDRFGST-EQLKVIEEDITKFHIRSHFLPFMKEKYGATKKL 171

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVL 177
            ++ +NLP+N+ T ++   +        +  + L+ Q E   R   A   SP Y  ++V 
Sbjct: 172 AKVASNLPFNVSTEVVKLLL---PMGDVFSVVVLMLQDETAVRFADASIQSPEYRSINVF 228

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRR 234
             + ++    F +    FFP PKV   VI F        P     +S   +   AF  +R
Sbjct: 229 VDFYSEPEYKFRVDRENFFPRPKVDGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKR 288

Query: 235 KTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           K LR+SL+ +      E  L   G+    R  +L ++DF R+ N L 
Sbjct: 289 KMLRKSLQHICSSSDIEAALDNIGLPVTARPSDLILDDFVRLHNHLA 335


>gi|6324989|ref|NP_015057.1| Dim1p [Saccharomyces cerevisiae S288c]
 gi|1169344|sp|P41819|DIM1_YEAST RecName: Full=Dimethyladenosine transferase; AltName: Full=18S rRNA
           (adenine(1779)-N(6)/adenine(1780)-N(6))-
           dimethyltransferase; AltName: Full=18S rRNA dimethylase;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|601876|gb|AAA57357.1| dimethyladenosine transferase [Saccharomyces cerevisiae]
 gi|1370549|emb|CAA98001.1| DIM1 [Saccharomyces cerevisiae]
 gi|151942536|gb|EDN60882.1| dimethyladenosine transferase [Saccharomyces cerevisiae YJM789]
 gi|190407700|gb|EDV10965.1| dimethyladenosine transferase [Saccharomyces cerevisiae RM11-1a]
 gi|256271159|gb|EEU06250.1| Dim1p [Saccharomyces cerevisiae JAY291]
 gi|259149891|emb|CAY86694.1| Dim1p [Saccharomyces cerevisiae EC1118]
 gi|285815278|tpg|DAA11170.1| TPA: Dim1p [Saccharomyces cerevisiae S288c]
 gi|323302623|gb|EGA56429.1| Dim1p [Saccharomyces cerevisiae FostersB]
 gi|323306894|gb|EGA60178.1| Dim1p [Saccharomyces cerevisiae FostersO]
 gi|323331103|gb|EGA72521.1| Dim1p [Saccharomyces cerevisiae AWRI796]
 gi|323335244|gb|EGA76533.1| Dim1p [Saccharomyces cerevisiae Vin13]
 gi|323346064|gb|EGA80354.1| Dim1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323351899|gb|EGA84438.1| Dim1p [Saccharomyces cerevisiae VL3]
          Length = 318

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+E+G G GNLT  +L   A+ V+ +E 
Sbjct: 28  FKFNTDLGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILEQ-AKNVVAVEM 86

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEI+  D +K +   F         I+N PY I + L+F 
Sbjct: 87  DPRMAAELTKRVRGTPVEKKLEIMLGDFMKTELPYF------DICISNTPYQISSPLVFK 140

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I+    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 141 LINQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 197

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+                  + +  F ++ +T+    K     ++L +
Sbjct: 198 PPPQVESSVVRLEIKNPRPQVDYNEWDGLLRIVFVRKNRTISAGFKSTTVMDILEK 253


>gi|57236897|ref|YP_179850.1| dimethyladenosine transferase [Campylobacter jejuni RM1221]
 gi|205355725|ref|ZP_03222495.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|62900460|sp|Q5HS85|RSMA_CAMJR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|57165701|gb|AAW34480.1| dimethyladenosine transferase [Campylobacter jejuni RM1221]
 gi|205346502|gb|EDZ33135.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315059157|gb|ADT73486.1| Dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 266

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 14/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   +V   E 
Sbjct: 2   VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D    PILK    +     +  +I  DA +           P  ++ANLPY + + ++  
Sbjct: 59  DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ Q+E+ E+  A++ +  +  L VL+    +  ++FD+ P  F 
Sbjct: 117 ALEDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    +   +L   
Sbjct: 173 PPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G++ N+R   + ++ + +I + L D
Sbjct: 233 GLKENIRPHEICVDLYLKIYDKLKD 257


>gi|212278079|gb|ACJ23054.1| KsgA [Neisseria gonorrhoeae]
          Length = 226

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 113/263 (42%), Gaps = 44/263 (16%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAK-KLNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F  IS   +I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNGISGKKKIVGNLPYNISTPLLFKLA 117

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +  + QKEV ER+ A                                 +
Sbjct: 118 EVAD---DVADMHFMLQKEVVERMVA---------------------------------A 141

Query: 199 PKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           PK+ S V+  IP  + I      +   K+ + AF +RRKT+R +LK L  ++ L   GI 
Sbjct: 142 PKIDSAVVRMIPVKHRIGKADDFDHFAKLVKLAFRQRRKTIRNNLKELADDDDLQAVGIS 201

Query: 257 TNLRAENLSIEDFCRITNILTDN 279
              RAE+++ E +  ++N L D 
Sbjct: 202 PQDRAEHIAPEKYVALSNYLADK 224


>gi|153952508|ref|YP_001398990.1| dimethyladenosine transferase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939954|gb|ABS44695.1| dimethyladenosine transferase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 266

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 127/265 (47%), Gaps = 14/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   +V   E 
Sbjct: 2   VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D    PILK    +     +  +I  DA +           P  ++ANLPY + + ++  
Sbjct: 59  DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ QKE+ E+  A++ +  +  L VL+    +  ++FD+ P  F 
Sbjct: 117 ALEDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    +   +L   
Sbjct: 173 PPPKVISAVMSLIKTKDFNELCEIENFKNFLKDCFKAPRKQLLGNLKTYKVKVLEVLSIL 232

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G++ N+R   + ++ + +I + L D
Sbjct: 233 GLKENIRPHEICVDSYLKIYDKLKD 257


>gi|85099447|ref|XP_960790.1| dimethyladenosine transferase [Neurospora crassa OR74A]
 gi|28922314|gb|EAA31554.1| dimethyladenosine transferase [Neurospora crassa OR74A]
          Length = 398

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 98/238 (41%), Gaps = 13/238 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQ+ L +  I   I + +       V+E+G G GN+T   L   A+KVI IE 
Sbjct: 35  FKFDKDFGQHILKNPGISDAIVDKAFLKPTDVVVEVGPGTGNITVRALE-KAKKVIAIEL 93

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +LE+I  D +K+       +     +I+N PY I + L+F 
Sbjct: 94  DPRMGAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFK 148

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E  +R+ A+     Y RLSV   +      +  +    F 
Sbjct: 149 MLAMPNPP---RVAVLMFQREFAKRLVARPGDALYSRLSVNVNFWATCKHIMKVGKQNFK 205

Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P PKV S V+   P           E    + + AF ++ KTL     +    N+  +
Sbjct: 206 PPPKVESDVVRIEPLVGSARPNIAFEEFDGLLRIAFNRKNKTLYAGFNQKEVLNMCER 263


>gi|45358550|ref|NP_988107.1| dimethyladenosine transferase [Methanococcus maripaludis S2]
 gi|62900533|sp|Q6LYK4|RSMA_METMP RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|44921308|emb|CAF30543.1| dimethyladenosine transferase related protein (rRNA methylase)
           [Methanococcus maripaludis S2]
          Length = 267

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 125/269 (46%), Gaps = 23/269 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K +GQ FL D N +KK    +   +   V+E+G G G LT+ L  + A+KV VIE D++
Sbjct: 4   SKKLGQCFLKDKNFVKKAINRAEITNNDIVLEVGLGEGALTKELAKI-AKKVYVIELDER 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P   +I+++  N +EII  DALKVD +         +I+ANLPY I + + F ++  D
Sbjct: 63  LKPFADEITAEFEN-VEIIWSDALKVDLKNL----GFNKIVANLPYQISSPITFKFLEED 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E+  L++Q E  +R+  + ++  Y RLSV   +      +  + P  F P P V
Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172

Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL---------KRLGGENLLH 251
            S ++             E    K+ +  F  R +T++++L          R   + +L 
Sbjct: 173 NSAIVKLTKREPKYHVKDEEFFKKVLKAVFQHRNRTIKRALIDSSHEIEVDRDNLKGILE 232

Query: 252 --QAGIETNLRAENLSIEDFCRITNILTD 278
             +   +   R      E    ++N+L D
Sbjct: 233 KIENEFDFTQRVFKTPPEKIGDLSNLLYD 261


>gi|261402315|ref|YP_003246539.1| dimethyladenosine transferase [Methanocaldococcus vulcanius M7]
 gi|261369308|gb|ACX72057.1| dimethyladenosine transferase [Methanocaldococcus vulcanius M7]
          Length = 274

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 27/275 (9%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             PKK +GQ FL+D N + K  ES+       V+EIG G G LT+ L    A+KV VIE 
Sbjct: 2   FKPKKKLGQCFLIDKNFVNKAVESANLTKDDIVLEIGLGKGILTEELAKH-AKKVYVIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+        +   + N +EII +DALKVD           ++IANLPY I + + F  I
Sbjct: 61  DKSLESYANKLKENY-NNIEIIWNDALKVDLNTL----DFNKVIANLPYQISSPITFKLI 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                   ++   L++Q E  +R+ A++ +  YGRLSV    R     +  + P  F P 
Sbjct: 116 KKG-----FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEFITKVPPTAFHPK 170

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL----KRLG-GENLLHQ 252
           PK+ S +I    + N      E       +  F  R K++R++L    K LG  +  + +
Sbjct: 171 PKIHSALIKIKLNKNKYQIENEIFFDNFLRAVFQHRNKSVRKALIDSSKELGYSKEEMKK 230

Query: 253 AGIETNL----------RAENLSIEDFCRITNILT 277
             I+ +           +   LS+ +F  ++N L 
Sbjct: 231 ILIKFSEKEKIGSLIENKVFKLSVGEFVFLSNELY 265


>gi|300681318|emb|CAZ96033.1| dimethyladenosine transferase [Sorghum bicolor]
          Length = 343

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 138/287 (48%), Gaps = 22/287 (7%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            +++++ S  + +P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL 
Sbjct: 60  STIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQ 119

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD---------ALKVDFEKFFNISSP 118
            GA  V  +EKD+    ++KD       +L++I++D          L    EK+      
Sbjct: 120 AGA-TVFAVEKDKHMATLVKDRFGST-EQLKVIEEDITKFHIRSHFLPFMKEKYHATKKL 177

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVL 177
            ++++NLP+N+ + ++   +        +  + L+ Q E   R+  A    P Y  ++V 
Sbjct: 178 AKVVSNLPFNVSSEVVKLLL---PMGDVFSVVVLMLQDETAVRLADASIQIPEYRPINVF 234

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRR 234
             + +K    F +    FFP PKV   VI F        P     +S   +   AF  +R
Sbjct: 235 VNFYSKPEYKFRVDRENFFPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKR 294

Query: 235 KTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           K LR+SL+ L      E  L   G+    R  +L ++DF R+ N LT
Sbjct: 295 KMLRKSLQHLCSSSEIEAALDNIGLPVTARPSDLILDDFVRLHNHLT 341


>gi|193216436|ref|YP_001999678.1| dimethyladenosine transferase [Mycoplasma arthritidis 158L3-1]
 gi|226732598|sp|B3PLS2|RSMA_MYCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|193001759|gb|ACF06974.1| dimethyladenosine transferase [Mycoplasma arthritidis 158L3-1]
          Length = 258

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 125/267 (46%), Gaps = 16/267 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +I KK  GQNFL++  I K I + +   D   VIEIG G G LT ++  L ++++I  E 
Sbjct: 3   VIAKKRFGQNFLINKAIQKAIVDVACV-DDENVIEIGPGLGALTDLIKEL-SKELIAYEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D   F  L  +     + +  I +D L       F+      +I N+PYNI + +LF  I
Sbjct: 61  DNDLFKKL--LVENQNSNVRFINEDFLNAT----FDEKKEWVVIGNIPYNITSEILFKLI 114

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
              +     +  TL+ Q EV  R+ A   +  Y +L+V   +       F +    F P+
Sbjct: 115 ENHS---ILKKATLMVQDEVANRLVAMPKTKEYSKLTVSVNFVGNVKKHFVVKASNFNPA 171

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQAG 254
           PKV S +I    + + +P  L+ +    ++ F  +RK L  +L     +      + Q G
Sbjct: 172 PKVDSAIITIDFYKS-LPYNLKKVLAFIKQIFAFKRKMLINNLVPQWPKADVIWAIEQIG 230

Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281
            +   RAE LS+++  ++  IL +++ 
Sbjct: 231 HKQTTRAEELSLQEIMKLYEILVNSKS 257


>gi|237752126|ref|ZP_04582606.1| dimethyladenosine transferase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376368|gb|EEO26459.1| dimethyladenosine transferase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 276

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 84/271 (30%), Positives = 128/271 (47%), Gaps = 15/271 (5%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +   +I+ KK+ GQNFL + NIL  I +S       I +IEIGAG G+LT  LL+LG   
Sbjct: 13  IKTKQILAKKHFGQNFLNNENILNAIIQSIPKIEKNIELIEIGAGLGDLTNKLLSLG--N 70

Query: 73  VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +   E D++  P L++          L +   D L++   +         ++ANLPY I 
Sbjct: 71  ITAYEVDKELVPYLQERFKSALEFGHLNLEIGDVLEIWKGESLR-KQAYFLVANLPYYIA 129

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T L+   I      P      ++ QKEV ++  AQ    ++  LSVL      AT++FD+
Sbjct: 130 TLLVIKTIKD----PLSTGCVVMTQKEVAQKFCAQCGESNFSALSVLAQSVGMATLLFDV 185

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGE-- 247
            P  F P PKV S+V       NP     LE L+ + + AF   RKT+  +L +   +  
Sbjct: 186 PPTAFVPQPKVISSVFLLQKIANPPSFKDLEHLESLLKVAFSAPRKTILNNLSKAYPKQA 245

Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITNIL 276
             + L    I  + R   +  +D+ R+  IL
Sbjct: 246 ILDALESLQIAPSKRPHEIDTQDYHRLLKIL 276


>gi|167754973|ref|ZP_02427100.1| hypothetical protein CLORAM_00477 [Clostridium ramosum DSM 1402]
 gi|237735300|ref|ZP_04565781.1| dimethyladenosine transferase [Mollicutes bacterium D7]
 gi|167705023|gb|EDS19602.1| hypothetical protein CLORAM_00477 [Clostridium ramosum DSM 1402]
 gi|229381045|gb|EEO31136.1| dimethyladenosine transferase [Coprobacillus sp. D7]
          Length = 268

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 136/282 (48%), Gaps = 20/282 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       + K IL  Y +   K  GQNFL+D+NI+ KI  S+       VIE+G G G 
Sbjct: 1   MKEIATPSTTKYILEKYHLNALKKYGQNFLIDVNIINKIVTSAKIDQTTAVIEVGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----S 116
           LTQ+L    + KV   E D++F P+ ++  +Q  + +EII  D ++ D +   +      
Sbjct: 61  LTQVL-GRYSGKVTSFEIDERFMPVYQEFLNQ--DNIEIIFGDFMEQDIKPIVDQLKQRY 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             + ++ANLPY I T ++   +  +      + + ++ QKEV  ++T    +P    L +
Sbjct: 118 QKVCLVANLPYYITTAIIEKVVLGN---FGIDEMIVMVQKEVALKMTGIYKNP----LLL 170

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           +         +F ++ +VF P+P V S ++       P     E    +    F +RRKT
Sbjct: 171 MIKDMGTIEYLFTVNKNVFMPAPHVDSAILKIELKKAPDLKLYE----VLNICFKQRRKT 226

Query: 237 LRQSLKRLG--GENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +  +LK+     E +L Q GIE   R+E L + DF  IT ++
Sbjct: 227 ILNNLKQSYEEAEEILLQTGIENRKRSEELELADFKNITKMI 268


>gi|148273552|ref|YP_001223113.1| dimethyladenosine transferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831482|emb|CAN02443.1| putative dimethyladenosine transferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 304

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 130/284 (45%), Gaps = 21/284 (7%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF++D N +++I   +    G  V+E+G G G+LT  LL
Sbjct: 21  PAEIRDLAELLGVAPTKKLGQNFVIDANTVRRIVRVARVEAGTHVVEVGPGLGSLTLGLL 80

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
             GA  V+ +E D +    L    + +     L ++ +DAL+V          P  ++AN
Sbjct: 81  ETGA-SVVAVEIDGRLAEQLPITVALYQPDAELTVVHEDALRV----AELPGDPTALVAN 135

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +      P   +  ++ Q EVG RI A   S  YG  SV   W    
Sbjct: 136 LPYNVSVPVLLHLLE---HFPAIRTGVVMVQAEVGHRIAAAPGSKVYGSPSVKAAWYGAW 192

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL----KKITQEAFGKRRKTLRQS 240
                +S  VF+P P V S ++ F  H  P     ESL     KI   AF +RRK LRQ+
Sbjct: 193 RTAGQVSRQVFWPVPNVDSVLVAFERHAEPF--ASESLRVRTFKIVDAAFQQRRKMLRQA 250

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L  L G       LL   G+    R E LS+ D+ R+     D 
Sbjct: 251 LAELLGGSEAASALLEAGGVAPTSRGEELSVHDYLRVARAWADR 294


>gi|86150521|ref|ZP_01068745.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597720|ref|ZP_01100953.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218563297|ref|YP_002345077.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|27151611|sp|Q9PLW7|RSMA_CAMJE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|85838973|gb|EAQ56238.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190024|gb|EAQ94000.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112361004|emb|CAL35805.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926902|gb|ADC29254.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315929676|gb|EFV08853.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           305]
          Length = 266

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 14/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   +V   E 
Sbjct: 2   VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D    PILK    +     +  +I  DA +           P  ++ANLPY + + ++  
Sbjct: 59  DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ Q+E+ E+  A++ +  +  L VL+    +  ++FD+ P  F 
Sbjct: 117 ALEDKNCL----GLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    +   +L   
Sbjct: 173 PPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G++ N+R   + ++ + +I + L D
Sbjct: 233 GLKENIRPHEICVDLYLKIYDKLKD 257


>gi|296125514|ref|YP_003632766.1| dimethyladenosine transferase [Brachyspira murdochii DSM 12563]
 gi|296017330|gb|ADG70567.1| dimethyladenosine transferase [Brachyspira murdochii DSM 12563]
          Length = 282

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 23/292 (7%)

Query: 3   MNNKSHSLKTI---LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL--DGITVIEIGAG 57
           M +  +S + I   L    I P K  GQNFL D NI   IA +       G   +EIG G
Sbjct: 1   MLDNLYSKREITEYLKEKSIFPNKNRGQNFLCDRNIAYNIAYTVPKSYSRGELALEIGGG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G L+ ML+ +    + ++E D   +  LK+      N + II  D L  D     +   
Sbjct: 61  LGALSSMLIDIYKENLTIVEYDNALYNHLKEKF----NNINIIHKDILTFD---ISDSDK 113

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
              +  N+PYNI + ++   +        W     + Q +  ER+TA++N+ +Y  L++ 
Sbjct: 114 QYDVYGNIPYNIASPIMEWLLQKS--YGKWNYAVFMVQSDFAERLTAKENTENYSALTLF 171

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             +     + +++S  VF+P PKVTS++I   P    I   ++  K +++  F  RRKT+
Sbjct: 172 ANFMADVKLEYNVSKEVFYPIPKVTSSIISITPKETDIDM-IDIFKSVSKTLFHNRRKTI 230

Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           + +          +   + +L ++ IE N+R E L+++   +++NIL +  D
Sbjct: 231 KNNFINSPYININKNCIDEILKKSDIEGNVRGETLNLDKVIKLSNILKEYID 282


>gi|87307877|ref|ZP_01090020.1| dimethyladenosine transferase [Blastopirellula marina DSM 3645]
 gi|87289491|gb|EAQ81382.1| dimethyladenosine transferase [Blastopirellula marina DSM 3645]
          Length = 303

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 131/282 (46%), Gaps = 27/282 (9%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            + P    GQNFL+D+N+L  I  S+       V+EIG G G+LT  +    A  VI +E
Sbjct: 20  GLRPVSKHGQNFLIDMNLLDMIVSSADLGPQDVVLEIGTGTGSLTTRMAA-AAGHVITVE 78

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALK-----------VDFEKFFNISS-PIRIIANL 125
            D+  F +  +   +  N + ++Q D LK              EK   I    ++++ANL
Sbjct: 79  IDEHLFTLASEELFEFDN-VTMLQFDVLKNKNAFRPEVMETIKEKLAEIPDSRLKLVANL 137

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+ T +L N + ++  P    S+T+  QKEV ERI A  ++  YG LS+    + +  
Sbjct: 138 PYNVATPILSNLLRSEITPF---SMTVTIQKEVAERIIAVPSTKDYGALSIWMQSQCRCE 194

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKR 243
           ++  + P VF+P PK+ S +IH              E     T+  F  RRK LR  L  
Sbjct: 195 IVRIMGPGVFWPRPKIDSAIIHLQVDDELRGRIPDREFFHHFTRAIFFHRRKFLRSVLMS 254

Query: 244 LGGE--------NLLHQAGIETNLRAENLSIEDFCRITNILT 277
              E         ++ + G++ + RAE  + ++   ++ +  
Sbjct: 255 AFKEQLTKTQVDEVIAENGLQPDARAEQFTPDEVLAMSEMFR 296


>gi|270014921|gb|EFA11369.1| hypothetical protein TcasGA2_TC011527 [Tribolium castaneum]
          Length = 379

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 132/285 (46%), Gaps = 35/285 (12%)

Query: 28  NFLLD----------LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           NFL D            I  KI +++G++    V E+G GPG++T+ ++    +K+IV+E
Sbjct: 70  NFLDDFEIPTTVTESAKITDKIVKAAGNIRNHYVCEVGPGPGSITRSIIRKCPKKLIVVE 129

Query: 78  KDQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFF---------NISSPIRIIANLP 126
           KD +F PIL+ +     + ++  I   D    +FE+ F         +   PI +I NLP
Sbjct: 130 KDPRFVPILELLQEASQSHVKMGIKIQDIRDFNFEEGFAGAPAREWTDYPPPIHLIGNLP 189

Query: 127 YNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +++ T L+  W+ A       W     ++TL FQKEV ERI A        RLSV+  + 
Sbjct: 190 FSVSTNLIIRWLHAISEQRSAWSFGRSTMTLTFQKEVAERIVAPVTHEQRCRLSVMCQFW 249

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQS 240
                 F I    F P P V   V+  +P  +P+     ++++KI +  F  R+K   + 
Sbjct: 250 CDVEHKFTIPGRAFVPKPDVDVGVVTLVPKKHPLVKLPFKTVEKILRTVFNMRQKWSIKG 309

Query: 241 LKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILT 277
             RL  E+        L   A +++ +R   +S E+F RI     
Sbjct: 310 GGRLFPEDKRDELAVKLFALADVDSRIRPFEISNEEFARICYAYK 354


>gi|225618959|ref|YP_002720185.1| putative dimethyladenosine transferase [Brachyspira hyodysenteriae
           WA1]
 gi|225213778|gb|ACN82512.1| putative dimethyladenosine transferase [Brachyspira hyodysenteriae
           WA1]
          Length = 281

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 23/289 (7%)

Query: 3   MNNKSHSLKTI---LSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAG 57
           M +  +S + +   L    I P K  GQNFL D NI   IA +       G   +EIG G
Sbjct: 1   MLDNLYSKREVTEYLKSKSIFPNKNRGQNFLCDKNIAYNIANTIPSHLSRGEYALEIGGG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            G+L+ ML  +    + ++E D   +  L +      N ++I+  D L  D     N  +
Sbjct: 61  LGSLSNMLHAVYKDNLTIVEYDNALYNHLIEKF----NDIKIVHQDILTFD---ISNSEN 113

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
              +  N+PYNI + ++   +        W     + Q +  +R+ A++N+ +Y  L++ 
Sbjct: 114 KYDVYGNIPYNIASPIMEWLL--HESYDKWNYAVFMVQSDFAQRLIAKENTENYSSLTLF 171

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             + +   + F++S  VF+P PKVTS+VI  IP        +E  K +++  F  RRKT+
Sbjct: 172 ANFMSNIKLEFNVSKDVFYPIPKVTSSVISIIPKKVDTDI-IEVFKSVSKTLFHNRRKTI 230

Query: 238 RQSL--------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           R +          +   + +L+++ I+ N+R E L I+    ++NI+ +
Sbjct: 231 RNNFIASPYLNIDKEYIDEILNKSNIDGNIRGETLHIDKVIELSNIVKE 279


>gi|256370598|ref|YP_003108423.1| dimethyladenosine transferase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009390|gb|ACU52750.1| dimethyladenosine transferase [Candidatus Sulcia muelleri SMDSEM]
          Length = 251

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 127/257 (49%), Gaps = 11/257 (4%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK +GQ FL D NI +KI  S       T++EIG G G LTQ LL L ++ V +IE 
Sbjct: 1   MFFKKKLGQYFLHDKNIAQKIVNSISFKK--TIVEIGPGMGMLTQYLL-LKSKNVFLIEI 57

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+++   LK   S   N +  +    L  + +++F  S    +I N PYNI +++LF  I
Sbjct: 58  DKKYVFFLKKKFSIIKNNIFNLN--FLNWNPQEYFLSS--FTLIGNFPYNISSQILFKII 113

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               + P       +FQKEV ERIT++     YG+LSV+     K   +F ++ +VF P 
Sbjct: 114 KYREYIP---ECIGMFQKEVAERITSKNKKKSYGKLSVIMQTFYKIEYLFTVNNNVFIPK 170

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           P+V S V+  +               I + AF  RRK L  SLK L      ++  I  N
Sbjct: 171 PRVKSAVVKMLKKKLNFKIKESIFFNIVKTAFLYRRKKLLNSLKILSFSTEFYKLPI-LN 229

Query: 259 LRAENLSIEDFCRITNI 275
            R E LS+ DF  +T  
Sbjct: 230 KRVEQLSVNDFILLTKY 246


>gi|55377170|ref|YP_135020.1| dimethyladenosine transferase [Haloarcula marismortui ATCC 43049]
 gi|62900484|sp|Q5V588|RSMA_HALMA RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|55229895|gb|AAV45314.1| dimethyladenosine transferase [Haloarcula marismortui ATCC 43049]
          Length = 285

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 126/280 (45%), Gaps = 26/280 (9%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLG 69
            ++            Q+FL+D  +L +I E +   D     V+EIGAGPG LT  LL   
Sbjct: 13  ALVRRAGKRADTRQDQHFLVDDRVLDRIPEYATDADIDLSHVLEIGAGPGALTDRLLAT- 71

Query: 70  ARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           A +V  +E+D  F   L++  ++    +RL I++ DAL+VD   F         I+NLPY
Sbjct: 72  AERVTAVERDPDFAAHLREEFTEEVAADRLTIVEGDALEVDLPDF------TASISNLPY 125

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
              + + F  +      P    L L+FQ+E  ER+ A   +  YGRLSV  G      ++
Sbjct: 126 GASSEIAFRLL------PEQRPLLLMFQQEFAERMAADPATDDYGRLSVTAGHYADVEVV 179

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLG- 245
             + P  F P P+VTS ++  +P          +      +  F +RRKT+R +++    
Sbjct: 180 ETVPPEAFDPQPRVTSALVRTMPRTPDYTVPSDDFFMDFLKAVFTQRRKTMRNAVRNTAH 239

Query: 246 ------GENLLHQAGIET-NLRAENLSIEDFCRITNILTD 278
                  + ++  A     + RA  L+  DF  +  +  +
Sbjct: 240 ISGLGDPDAVVEAADEGLMSARAGKLTPADFATLATLAYE 279


>gi|213406479|ref|XP_002174011.1| dimethyladenosine transferase [Schizosaccharomyces japonicus
           yFS275]
 gi|212002058|gb|EEB07718.1| dimethyladenosine transferase [Schizosaccharomyces japonicus
           yFS275]
          Length = 307

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 12/235 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQ+ L +  + + I + S      TV+E+G G GNLT  +L    +KV  +E 
Sbjct: 22  FKFNKDFGQHILKNPLVAQGIVDKSDLKQSDTVLEVGPGTGNLTVRILE-KVKKVTAVEM 80

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +L I+  D +K +   F         I+N PY I + L+F 
Sbjct: 81  DPRMAAELTKRVQGTPQEKKLNILLGDVIKTELPYF------DVCISNTPYQISSPLVFK 134

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +     P       L+FQ+E   R+ A+   P Y RLS           +  +  + F 
Sbjct: 135 LLKHRPAP---RLAVLMFQREFALRLVAKPGDPLYCRLSANVQMWAHVKHIMKVGKNNFR 191

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
           P P+V S+V+   P + P P   +    + +  F ++ KT+    K      ++ 
Sbjct: 192 PPPQVESSVVRIEPKIPPPPIDFDEWDGLLRIVFLRKNKTINACFKTGSVLEMME 246


>gi|326531118|dbj|BAK04910.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 351

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +    K  GQ+ L +  +L  I   +    G  V+E+G G GNLT  LL     +V  +E
Sbjct: 34  RFRLHKPRGQHLLTNPRVLDAIVRHAALRPGDAVLEVGPGTGNLTARLLAFPVNRVTAVE 93

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    +           +L +IQ DA++ +F +F         +AN+PY I + L+ 
Sbjct: 94  TDPRMVDAVTARFGALDMTRKLTVIQGDAMETEFPEF------DVCVANIPYGISSPLIA 147

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +        + + TLL QKE   R+ A      Y RL+   G      ++ D+S   F
Sbjct: 148 KLLFGAYH---FRTATLLLQKEFARRLVAMPGDSEYNRLAANVGMVADVKLLMDVSKRDF 204

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            P P+V S+++   P   P    L      T+E FG++ KTL    K+
Sbjct: 205 VPMPRVDSSLVEIRPRAAPPEVDLAEWLGFTRECFGQKNKTLGAIFKQ 252


>gi|325294975|ref|YP_004281489.1| ribosomal RNA small subunit methyltransferase A [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065423|gb|ADY73430.1| Ribosomal RNA small subunit methyltransferase A [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 253

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 124/263 (47%), Gaps = 14/263 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK +GQ+FL D NI++KI +S        VIEIG G G LT+ +L    +++IVIE 
Sbjct: 1   MRLKKSLGQHFLKDRNIIRKIVDSGNITFEDRVIEIGPGGGALTEEILKRNPKELIVIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+ +   L++      +R++I+  DA K DF  F       +   NLPYN+ T +L N +
Sbjct: 61  DKDWVEHLREKFG---DRIKIVNADATKFDFSSF---DGKFKYFGNLPYNVSTAILRNLL 114

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                    E    + QKEV  R++A+K    YG L  L         +FD+SP  F P 
Sbjct: 115 DHKD---SVEKGIFMVQKEVANRLSARKG-KEYGYLPALLSLFFDIKKLFDVSPRAFTPP 170

Query: 199 PKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV STV    P    I    L   +   + AF +RRK L+ +LK       + +     
Sbjct: 171 PKVMSTVFMMTPKEFDIEEKELIEFESFLKRAFSQRRKKLKSNLKLKNYPEEISEYM--- 227

Query: 258 NLRAENLSIEDFCRITNILTDNQ 280
             RAE L  E    +   + D Q
Sbjct: 228 ERRAEKLPPEKLLELFYTVRDFQ 250


>gi|316975090|gb|EFV58549.1| dimethyladenosine transferase [Trichinella spiralis]
          Length = 296

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 122/269 (45%), Gaps = 30/269 (11%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K H  K+ +S  +I  K   GQ+ L +  I+  I E +    G T+ E+G G GNLT   
Sbjct: 7   KRHIGKSNISRQEIPFKTTYGQHILKNPLIVNSIIEKAAIKQGDTIFEVGPGTGNLT--- 63

Query: 66  LTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
                  V+  E D +    L      S   ++LEI+  DALKV +  FF++      +A
Sbjct: 64  -------VVACEIDYRLAAELTKRVQGSALQSKLEILPGDALKVQWP-FFDVC-----VA 110

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLP+ I +  +F  +      P +    L+FQKE  ER+ A+     Y RLSV      K
Sbjct: 111 NLPFQISSPFVFRLL---LHRPPFRCAVLMFQKEFAERLVAKPGDRLYCRLSVNVQLLAK 167

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
              +  +  + F P PKV +TV+ F   + P P   +    + + AF ++ K+L  + K 
Sbjct: 168 VNAVIRVGRNNFRPPPKVDATVVRFELKMPPPPIDFQEWDGLLRIAFLRKNKSLSSAFKF 227

Query: 244 LGGENLLHQAGIETNLRAE----NLSIED 268
               ++L     + N R      N+ IED
Sbjct: 228 KKVLDML-----DKNYRVHCSVNNIKIED 251


>gi|94502395|ref|ZP_01308851.1| dimethyladenosine transferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833652|ref|YP_001597848.1| dimethyladenosine transferase [Candidatus Sulcia muelleri GWSS]
 gi|293977764|ref|YP_003543194.1| dimethyladenosine transferase [Candidatus Sulcia muelleri DMIN]
 gi|94451049|gb|EAT14018.1| dimethyladenosine transferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206141|gb|ABS30451.1| dimethyladenosine transferase [Candidatus Sulcia muelleri GWSS]
 gi|292667695|gb|ADE35330.1| dimethyladenosine transferase [Candidatus Sulcia muelleri DMIN]
          Length = 251

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 9/257 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +   K + Q FL D NI KKI  S    +  T++EIG G G LTQ  L L  + + ++E 
Sbjct: 1   MFFNKKLCQYFLHDKNIAKKIVNSISFKESKTIVEIGPGMGILTQY-LLLNNKNLFLLEI 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+++   LK       N   I   + L  + + FF  S    +I N PY I +++LFN I
Sbjct: 60  DKKYVEYLKIKYPIIKNN--IFNKNFLIWNPKDFFLDS--FTLIGNFPYKISSQILFNII 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               + P       +FQKEV +RIT++  +  YG+LSV+     K   +F ++  VF P 
Sbjct: 116 KYREYIP---ECIGMFQKEVADRITSKHMNKSYGKLSVIMQAFYKIEYLFTVNNTVFIPK 172

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           P+V S V+  +   + +    +   KI + AF  RRK L  SLK+L   +  ++  +   
Sbjct: 173 PRVKSAVVRMLKRKDNLLIKEDIFIKIVKTAFLYRRKKLYNSLKKLSFSSEFYKNPL-LK 231

Query: 259 LRAENLSIEDFCRITNI 275
            R E LS+ DF  +T  
Sbjct: 232 KRVEQLSVNDFILLTKY 248


>gi|288930669|ref|YP_003434729.1| dimethyladenosine transferase [Ferroglobus placidus DSM 10642]
 gi|288892917|gb|ADC64454.1| dimethyladenosine transferase [Ferroglobus placidus DSM 10642]
          Length = 248

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/257 (30%), Positives = 128/257 (49%), Gaps = 16/257 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K   Q+ L D   LKKI   +       V+E+G GPGNLT +LL   A+KV  IEKD++F
Sbjct: 5   KSRDQHILKDKRYLKKIVSVAEVR-DDVVLEVGCGPGNLTSLLLK-KAKKVYGIEKDRRF 62

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +LK   S +    +LEII+ DALKV+F +        + ++N+P++I + L F  +  
Sbjct: 63  VELLKKKFSGYIEEGKLEIIEGDALKVEFPE------CDKFVSNIPFSISSPLTFKVLKH 116

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 ++   + +QKE  ER+ A++ S  YGRLSV+     KA ++  I  + F P PK
Sbjct: 117 G-----FKLSVVTYQKEFAERLVAREGSKKYGRLSVIAKAYCKAEIVDIIPRYAFKPVPK 171

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE-TNL 259
           V + ++  +         LE  + +    F +RRK   + L+    +  +  + +   + 
Sbjct: 172 VDAAIVKIVHEPEIKVENLEVFEDLVTFVFSRRRKKFSKILEEWCEKRKVRVSDMGYGDE 231

Query: 260 RAENLSIEDFCRITNIL 276
           R E +  E F  I + L
Sbjct: 232 RPEKIPPEVFAEIADSL 248


>gi|32477477|ref|NP_870471.1| dimethyladenosine transferase [Rhodopirellula baltica SH 1]
 gi|62900568|sp|Q7UIR4|RSMA_RHOBA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|32448031|emb|CAD77548.1| dimethyladenosine transferase [Rhodopirellula baltica SH 1]
          Length = 284

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 134/283 (47%), Gaps = 30/283 (10%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P    GQNFL+DLN+++ IA S+       V+EIG G G+LT  ++   A  ++ +E 
Sbjct: 1   MRPVSKYGQNFLIDLNLVELIARSAEIGPSDIVLEIGTGVGSLTS-IMASQAGAILTVEI 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKV-------------DFEKFFNISSPIRIIANL 125
           DQ  F +  +  +  P+ +++IQ DALK              + +      S   ++ANL
Sbjct: 60  DQNLFQLASEELAPFPH-VKMIQGDALKNKSTFRDDIMESIREAKSRLPDDSKFMLVANL 118

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PYN+ T ++ N +  D  P   + + +  QKE+GER+ A   S  YG LS+      +A 
Sbjct: 119 PYNVATPIVSNLLHQDPPP---DRIVVTIQKELGERMVAGPGSKDYGALSIWIQATCRAE 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIP---HLNPIPCCLESLKKITQEAFGKRRKTLRQS-- 240
           ++  + P VF+P PKV S ++         N IP  L+   +  +  F  RRK LR    
Sbjct: 176 IVRILPPTVFWPRPKVDSAIVRLDVDHERGNAIP-DLKYFHQTVRALFFHRRKFLRSVVI 234

Query: 241 ------LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                 L +   + +L + G     RAE L++E    +   L 
Sbjct: 235 SAMKGRLDKPAIDEILGRLGHGETARAEELNLEQISDLVEALR 277


>gi|78778284|ref|YP_394599.1| dimethyladenosine transferase [Sulfurimonas denitrificans DSM 1251]
 gi|119365861|sp|Q30NR7|RSMA_SULDN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78498824|gb|ABB45364.1| dimethyladenosine transferase [Sulfurimonas denitrificans DSM 1251]
          Length = 267

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 123/264 (46%), Gaps = 18/264 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI+ KK  GQNFL D ++L+KI E+    +   ++EIG G G+LT+ L  +  + V   E
Sbjct: 3   KIVAKKKFGQNFLKDESVLQKIIEAM-PNNDNKIVEIGPGLGDLTKFL--VDVKSVDAFE 59

Query: 78  KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D     +L++   +     +L I   D L     +    S    ++ANLPY I T ++ 
Sbjct: 60  VDTDLCKVLQNKFEREIATKQLRIHCGDVLTAWKSELIEES--YDLVANLPYYIATNIIL 117

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             ++     P  +++ ++ Q EV E+  A      +G LS++T    +A ++ ++ P  F
Sbjct: 118 KALAD----PKCKNILVMVQLEVAEKFCANDGDKVFGSLSIITQSVGEAHIVVNVPPSAF 173

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLH 251
            P PK+ S V       +      +  + + + AF + RKTL ++L     +     +  
Sbjct: 174 EPQPKINSAVFLIQKKSDR---SDKDFEDMLRVAFTQPRKTLMKNLSSTYDKAMLQEIFE 230

Query: 252 QAGIETNLRAENLSIEDFCRITNI 275
           +  +   +R   +S  D+ ++  +
Sbjct: 231 KLSLAQTIRPHQVSTNDYHQLYKL 254


>gi|222445676|ref|ZP_03608191.1| hypothetical protein METSMIALI_01317 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435241|gb|EEE42406.1| hypothetical protein METSMIALI_01317 [Methanobrevibacter smithii
           DSM 2375]
          Length = 306

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 138/296 (46%), Gaps = 41/296 (13%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S + K IL+ Y I   K +GQN+L+D N   +I +         V+EIG G G LT  L 
Sbjct: 14  SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLTIELA 73

Query: 67  TLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               +KVI IE+D     IL++    ++ + +E+I DDAL V+F KF       +II+NL
Sbjct: 74  KR-VKKVIAIEQDSNICQILENRLKKENIDNVELINDDALNVEFPKF------DKIISNL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + + F +++ D     ++   L++QKE   R+  +  S  Y RLS +  ++    
Sbjct: 127 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-------------PCCLESLKKITQEAFGK 232
           ++  +S   F P PKV STV+   P L  +                 ++  K  +  F  
Sbjct: 182 LLTGVSAESFIPKPKVDSTVVRLTPKLPELNGQLKHLNINEINEKDFKTYSKFVKALFQH 241

Query: 233 RRKTLRQSL------------KRLGGE-NLLHQAGIET--NLRAENLSIEDFCRIT 273
           R K ++ +L            K +  + N + Q  IE   + R  NL+ E+   ++
Sbjct: 242 RNKKVKNALIDSRHIITDLDKKEMKAKLNSIKQKKIEELLSERITNLTPEEILYLS 297


>gi|289618785|emb|CBI54610.1| unnamed protein product [Sordaria macrospora]
          Length = 401

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 98/238 (41%), Gaps = 13/238 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQ+ L +  I   I + +       V+EIG G GN+T   L   A+KVI I+ 
Sbjct: 37  FKFDKDYGQHILKNPGISDAIVDKAFLKPTDVVVEIGPGTGNITVRALE-KAKKVIAIDI 95

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +LE+I  D +K+       +     +I+N PY I + L+F 
Sbjct: 96  DPRMGAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFK 150

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E  +R+ A+     Y RLSV   +      +  +    F 
Sbjct: 151 MLAMPNPP---RVAVLMFQREFAKRLVARPGDALYSRLSVNVNFWATCKHIMKVGKQNFK 207

Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P PKV S V+   P           E    + + AF ++ KTL     +    N+  +
Sbjct: 208 PPPKVESDVVRIEPLIGSARPNIAFEEFDGLLRIAFNRKNKTLYAGFNQKEVLNMCER 265


>gi|71894000|ref|YP_279446.1| dimethyladenosine transferase [Mycoplasma hyopneumoniae J]
          Length = 250

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 117/258 (45%), Gaps = 15/258 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D  I +KI E+        +IEIG G G LT  LL   A+ V   E D+   PI
Sbjct: 2   GQNFLKDRKIAEKIVENIDL-KNKEIIEIGCGTGFLTNFLLE-KAKFVTCYEIDRNLIPI 59

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L+         L II +D L               IIANLPY I +++LF   +      
Sbjct: 60  LEKKFKNK--NLRIINEDFL----LAELEFKEKKTIIANLPYYITSKILFKIFANFEK-- 111

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            ++ + L+ Q EV +RI A+  +P Y +LS+ + +      +F + P  FFP PK+ S V
Sbjct: 112 -FDKIILMVQNEVADRIVAKPKTPTYSKLSLASQYIAHVKKLFVVGPDSFFPKPKINSAV 170

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIETNLRA 261
           + F    N      E     T++ F  +RKTL  +L     +  + +         N+R 
Sbjct: 171 VFFDLRTNLDAKKTEQFFWFTKKCFQFKRKTLYNNLIFFLNKQQIEKIYNFFQFAQNIRP 230

Query: 262 ENLSIEDFCRITNILTDN 279
           + L +  + R+ +   +N
Sbjct: 231 QQLDLVTYIRLADFYFNN 248


>gi|283956167|ref|ZP_06373652.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792321|gb|EFC31105.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 266

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 14/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   +V   E 
Sbjct: 2   VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D    PILK    +     +  +I  DA +           P  ++ANLPY + + ++  
Sbjct: 59  DNDLIPILKKKFQKELECGKFNLIHQDASEAFNSSL--DEKPYFLVANLPYYVASHIILR 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ QKE+ E+  A++ +  +  L VL+    +  ++FD+ P  F 
Sbjct: 117 ALEDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172

Query: 197 PSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    +   +L   
Sbjct: 173 PPPKVISAVMSLIKTKDFDEFCEIENFKNFLKDCFKAPRKQLLGNLKTYKVKVLEVLSIL 232

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G++ N+R   + +  + +I + L D
Sbjct: 233 GLKENIRPHEICVNSYLKIYDKLKD 257


>gi|148643434|ref|YP_001273947.1| dimethyladenosine transferase [Methanobrevibacter smithii ATCC
           35061]
 gi|148552451|gb|ABQ87579.1| dimethyladenosine transferase, KsgA [Methanobrevibacter smithii
           ATCC 35061]
          Length = 303

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 121/249 (48%), Gaps = 26/249 (10%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S + K IL+ Y I   K +GQN+L+D N   +I +         V+EIG G G LT  L 
Sbjct: 11  SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLTIELA 70

Query: 67  TLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               +KVI IE+D     IL++    ++ + +E+I DDAL V+F KF       +II+NL
Sbjct: 71  KR-VKKVIAIEQDSNICQILENRLKKENIDNVELINDDALNVEFPKF------DKIISNL 123

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + + F +++ D     ++   L++QKE   R+  +  S  Y RLS +  ++    
Sbjct: 124 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 178

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-------------PCCLESLKKITQEAFGK 232
           ++  +S   F P PKV STV+   P L  +                 ++  K  +  F  
Sbjct: 179 LLTGVSAESFIPKPKVDSTVVRLTPKLPELNGQLKHLNINEINEKDFKTYSKFVKALFQH 238

Query: 233 RRKTLRQSL 241
           R K ++ +L
Sbjct: 239 RNKKVKNAL 247


>gi|315639329|ref|ZP_07894491.1| dimethyladenosine transferase [Campylobacter upsaliensis JV21]
 gi|315480655|gb|EFU71297.1| dimethyladenosine transferase [Campylobacter upsaliensis JV21]
          Length = 260

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/266 (29%), Positives = 122/266 (45%), Gaps = 16/266 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D  IL KI ++    D   ++EIG G G+LTQ LL +    V   E 
Sbjct: 2   IKAKKQYGQNFLHDKEILTKITQAI-PKDVKKIVEIGPGLGDLTQELLKISP--VKAYEI 58

Query: 79  DQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      L+D   +     +  ++  DA ++             ++ANLPY I ++L+  
Sbjct: 59  DADLIGFLRDKFQKELKEEKFILLHQDASELSCFD----EDKYFLVANLPYYIASKLILQ 114

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +  +      + L ++ QKE+  +  A+  S  +G L VL+    +  ++FD+SP  F 
Sbjct: 115 ALEDENC----QGLIVMVQKEMALKFCAKSGSSDFGTLGVLSAMICEREILFDVSPSCFN 170

Query: 197 PSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV S+V+  I        C L+S K   +  F   RK L  +LK    E   L    
Sbjct: 171 PPPKVVSSVMRLIKQKELKQICELDSFKSFLRICFKSPRKQLLSNLKAEKRELLELFEDL 230

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G++ N+R   L +  + +I   L D 
Sbjct: 231 GLKENVRPHELCVNSYLKIYEKLKDQ 256


>gi|218660682|ref|ZP_03516612.1| dimethyladenosine transferase [Rhizobium etli IE4771]
          Length = 173

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 125/174 (71%), Gaps = 1/174 (0%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +    L+ ++  + +  +K +GQNFLLDLN+ +KIA ++G L+G TV E+G GPG 
Sbjct: 1   MAALDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGGLEGTTVFEVGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ +L LGA+KVI IE+D +  P L +I+  +P RLE+I+ DALK DFE     S P++
Sbjct: 61  LTRAILALGAKKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAPES-PVK 119

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
           IIANLPYN+GT+LL NW+    WPPFW+SLTL+FQKEVGERI A ++  HYGRL
Sbjct: 120 IIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVADEDDDHYGRL 173


>gi|322369466|ref|ZP_08044031.1| dimethyladenosine transferase [Haladaptatus paucihalophilus DX253]
 gi|320551198|gb|EFW92847.1| dimethyladenosine transferase [Haladaptatus paucihalophilus DX253]
          Length = 294

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 36/285 (12%)

Query: 12  TILSHYKII--PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            ++    +   P +   Q+FL+D  ++ +I   +  ++   V+EIG GPG LT  LL   
Sbjct: 16  ALIRRAGVRGDPNRD--QHFLVDDRVVDRIPTYADEMNLEHVLEIGGGPGVLTDRLLA-A 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           A +V VIE+D  F   L++          L +++ DAL V+   F         IANLPY
Sbjct: 73  ADRVTVIERDPTFAEFLREEFRSECDDGGLTVVEGDALSVELPDFS------ACIANLPY 126

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I + + F  +      P  + + L+FQKE  ER+ A+  S  YGRLSV         ++
Sbjct: 127 GISSEIAFRLL------PLGKPMLLMFQKEFAERMAAESGSDDYGRLSVTAQHYADVRVV 180

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRL-- 244
             +    F P P+V S ++  IP         E+      +  F +RRKT+R  ++    
Sbjct: 181 ETVPREAFAPQPEVESAIVRTIPREPEYEVDDEAFFLDFVKAVFTQRRKTIRNGIRNTAH 240

Query: 245 --------GGENLLHQAGIE------TNLRAENLSIEDFCRITNI 275
                      + L     +         RA  +S  +F  +  +
Sbjct: 241 ISGLDDPDAVVDALESPDDDVLDEDILRERAGKVSPVEFAAMARV 285


>gi|194246621|ref|YP_002004260.1| dimethyladenosine transferase [Candidatus Phytoplasma mali]
 gi|193806978|emb|CAP18413.1| Dimethyladenosine transferase (high level kasugamycin resistance
           protein ksgA) (Kasugamycin dimethyltransferase)
           [Candidatus Phytoplasma mali]
          Length = 269

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/263 (34%), Positives = 132/263 (50%), Gaps = 20/263 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D+N+LKKI   +       V+EIG G G LTQ ++ L ++K +  E D+ 
Sbjct: 5   KKKYGQNFLSDINLLKKIVNEANL-KNKNVVEIGPGKGALTQFII-LQSKKFLAYEIDET 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVD-FEKFFN--ISSPIRIIANLPYNIGTRLLFNWI 138
             P L     +  N  +II DD LK +  E FFN      I +I NLPY I T L+F ++
Sbjct: 63  LKPFL---IFEKSNNFKIIYDDFLKRNLKEDFFNYFGEEKITLIGNLPYYITTPLIFKFL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                     S T++ QKEVG R+ A+ N+ HY  LSV+  + TK   + ++  ++F P 
Sbjct: 120 EEKQ----INSFTIMLQKEVGLRLLAKPNTKHYNALSVIIQFLTKIKKILEVKKNMFKPK 175

Query: 199 PKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR------LGGENLL 250
           PKV S V+ F      N       +     + +F ++RKTL  +L +             
Sbjct: 176 PKVDSIVLKFDKKNQKNLTINFKNNFFIFVKISFSQKRKTLINNLVKGYKINKKKIIIFF 235

Query: 251 HQAGIETNLRAENLSIEDFCRIT 273
               I+ ++RAE +SIE F  I+
Sbjct: 236 DNNNIQYHIRAEQISIELFKEIS 258


>gi|148926802|ref|ZP_01810481.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844527|gb|EDK21634.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 266

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 14/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   +V   E 
Sbjct: 2   VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D    PILK    +     +  +I  D  +           P  ++ANLPY + + ++  
Sbjct: 59  DNDLIPILKKKFQKELECGKFNLIHQDTSEAFNPSL--DEKPYFLVANLPYYVASHIILK 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ Q+E+ E+  A++ +  +  L VL+    +  ++FD+ P  F 
Sbjct: 117 ALEDKNCL----GLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    +   +L   
Sbjct: 173 PPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G++ N+R   + ++ + +I + L D
Sbjct: 233 GLKENIRPHEICVDLYLKIYDKLKD 257


>gi|134045845|ref|YP_001097331.1| dimethyladenosine transferase [Methanococcus maripaludis C5]
 gi|166221675|sp|A4FY32|RSMA_METM5 RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|132663470|gb|ABO35116.1| dimethyladenosine transferase [Methanococcus maripaludis C5]
          Length = 263

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 23/269 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K +GQ FL D N +KK    +   +   V+E+G G G LT+ L  + A+KV VIE D++
Sbjct: 4   SKKLGQCFLKDKNFVKKAINRAEITNKDVVLELGLGEGALTKELAKI-AKKVYVIELDER 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P   +I+S+  N +EII  DALKVD +         +I+ANLPY I + + F ++  D
Sbjct: 63  LKPFADEITSEFEN-VEIIWSDALKVDLKNL----GFNKIVANLPYQISSPITFKFLDVD 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E+  L++Q E  +R+  + ++  Y RLSV   +      +  + P  F P P V
Sbjct: 118 -----FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172

Query: 202 TSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSL---------KRLGGENLLH 251
            S ++              +  KK+ +  F  R +T++++L          R   + +L 
Sbjct: 173 NSAIVKLTKREPKYFVKDEKFFKKVLKAMFQHRNRTIKRALIDSSHEIEIDRDNLKEILE 232

Query: 252 --QAGIETNLRAENLSIEDFCRITNILTD 278
             ++  + + R    S E    ++N+L D
Sbjct: 233 KVESEFDFSERVFKTSPEKIGYLSNLLYD 261


>gi|58613497|gb|AAW79335.1| chloroplast dimethyladenosine synthase [Heterocapsa triquetra]
          Length = 395

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 127/274 (46%), Gaps = 19/274 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLTLGARKVIVI 76
             PK+ + QNFL D N + K+  +       G  V+E+G G G LT  L      +++ +
Sbjct: 110 FKPKQSLSQNFLADPNYVFKMVNAIEDDSPGGKQVLELGPGTGALTSRLHPRFP-EMMAV 168

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLF 135
           + DQ+   +L            +I+ D L +++ K   +   P+ I+ NLPY++ +++LF
Sbjct: 169 DLDQRAMRVLAQNVPGC----TVIRSDVLLINYTKLAEVRGGPLTIVGNLPYHVTSQILF 224

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
                       +   +  QKEV ERI A+ N+  YG LSV         ++FDI P+ F
Sbjct: 225 TL---ADHAKSVKDAHVTMQKEVAERIVARPNTKKYGILSVCFQLYADPKILFDIPPNAF 281

Query: 196 FPSPKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGEN 248
           FP P V S+ +             +     +L+ +T  AF  RRK L+ SLK L      
Sbjct: 282 FPRPNVMSSYVKLNFADAEERRLALNVDPRNLRNVTTRAFRMRRKMLQNSLKNLLDCXXT 341

Query: 249 LLHQAGIE-TNLRAENLSIEDFCRITNILTDNQD 281
           L+++   E   LR E +   +F  +T +L   ++
Sbjct: 342 LINELPEEYAKLRPEQIEPWEFVHLTQLLFGKKE 375


>gi|150400809|ref|YP_001324575.1| dimethyladenosine transferase [Methanococcus aeolicus Nankai-3]
 gi|166221674|sp|A6UTZ1|RSMA_META3 RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|150013512|gb|ABR55963.1| dimethyladenosine transferase [Methanococcus aeolicus Nankai-3]
          Length = 271

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 112/228 (49%), Gaps = 13/228 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K +GQ FL D NI+KK   ++       V+EIG G G LT+ L     +KVIVIE D++
Sbjct: 4   NKKLGQCFLKDKNIVKKAINAANINKNDIVLEIGLGKGILTKELAKQC-KKVIVIELDKK 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                +DI  ++PN +EII +DALKV+ ++        +++ANLPY I + + F  +  D
Sbjct: 63  LEIFWEDIIKEYPN-VEIIWNDALKVNLKEL----GFNKVVANLPYQISSPITFKLLDCD 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E   L++Q E  +R+ A   +  Y RLSV   +R     +  +SP  F P PKV
Sbjct: 118 -----FEVAVLMYQYEFAKRMGAPSGTKEYSRLSVSVQYRAVVDYVCKVSPSAFSPKPKV 172

Query: 202 TSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
            S ++       PI      E      +  F  R K  +++L     E
Sbjct: 173 DSAIVKITKKNEPIHNIDNWEFFDGFNRALFQHRNKNTKKALIHSAHE 220


>gi|170782640|ref|YP_001710974.1| dimethyladenosine transferase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157210|emb|CAQ02393.1| putative dimethyladenosine transferase (drug resistance)
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 305

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/286 (29%), Positives = 128/286 (44%), Gaps = 17/286 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF++D N +++I   +    G  V+E+G G G+LT  LL
Sbjct: 22  PAEIRDLAELLGVAPTKKLGQNFVIDANTVRRIVRVARVEAGTHVVEVGPGLGSLTLGLL 81

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQDDALKVDFEKFFNISSPIRIIAN 124
             GA  V+ +E D +    L    + +     L ++ +DAL+V          P  ++AN
Sbjct: 82  ETGA-SVVAVEIDGRLAEQLPITVALYQPDAVLTVVHEDALRV----AELPGDPTALVAN 136

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +L + +      P   +  ++ Q EVG RI A   S  YG  SV   W    
Sbjct: 137 LPYNVSVPVLLHLLE---HFPAIRTGVVMVQAEVGHRIAAAPGSKVYGAPSVKAAWYGAW 193

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLK 242
                +S  VF+P P V S ++ F  H  P       +    I   AF +RRK LRQ+L 
Sbjct: 194 RTAGQVSRQVFWPVPNVDSVLVAFERHAEPFASEELRKRTFTIVDAAFQQRRKMLRQALA 253

Query: 243 RLGG-----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            L G       LL   G+    R E LS+ D+ R+ +       + 
Sbjct: 254 ELLGGSEAASALLEAGGVAPTSRGEQLSVHDYLRVAHAWAGRDQVG 299


>gi|284165664|ref|YP_003403943.1| dimethyladenosine transferase [Haloterrigena turkmenica DSM 5511]
 gi|284015319|gb|ADB61270.1| dimethyladenosine transferase [Haloterrigena turkmenica DSM 5511]
          Length = 284

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 18/232 (7%)

Query: 27  QNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFF 83
           Q+FL+D  +L ++         D   V+EIG G G LT  LL +G   KV V+E+D++  
Sbjct: 21  QHFLVDDRVLDRLPTYLQEIDADTDHVLEIGGGTGALTDRLLAMGDEGKVTVVERDRELA 80

Query: 84  PILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L++  +       L +I+ DAL+VD  +F         ++NLPY + + + F  +   
Sbjct: 81  EFLREEFADEIAAGNLTVIEGDALEVDLPEF------TASLSNLPYGVSSEITFRLL--- 131

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P    L L+FQ+E  ER+ A+  +  YGRLSV T       ++  I    F P P V
Sbjct: 132 ---PEGRPLVLMFQREFAERMVAEPGTSEYGRLSVSTQHYAAPEIVETIPKEAFSPPPAV 188

Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S V+   P         E    +  +  F +RRKT+R +++       L  
Sbjct: 189 ESAVVRLEPRDPDYEVGDEEFFLRFVKALFTQRRKTIRNAIRNTAHITGLEA 240


>gi|157163959|ref|YP_001467822.1| dimethyladenosine transferase [Campylobacter concisus 13826]
 gi|171855081|sp|A7ZGB4|RSMA_CAMC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|112801728|gb|EAT99072.1| dimethyladenosine transferase [Campylobacter concisus 13826]
          Length = 280

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/277 (28%), Positives = 130/277 (46%), Gaps = 21/277 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK+ GQNFL D   L KI ++    D   V+EIG G G+LT  LL +   K    E 
Sbjct: 2   IKAKKHFGQNFLQDKATLDKIIQAI-PKDVENVVEIGPGLGDLTFRLLQI--YKTTSFEI 58

Query: 79  DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D++ F ILK   +      +L++   DAL+   ++    S    ++ANLPY + T+++ N
Sbjct: 59  DRELFQILKVKFANEIQNGQLKLFCKDALEQWQQEGGLSSENYFLVANLPYYVATKMILN 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I  +        L ++ QKEV  + +A+     +  LS+L   + +  ++FD+   +F 
Sbjct: 119 AIDDEKCL----GLIVMIQKEVALKFSAKSKDKEFSALSILASLQGRCELLFDVDAKLFN 174

Query: 197 PSPKVTSTVIHFIPHLNPIPCC--------LESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           P PKVTS+VI                     E+ K   + AF   RKTL ++L     + 
Sbjct: 175 PPPKVTSSVIKLQKTKKIFGKDGIFKDAKQYEAFKAFLRAAFASPRKTLLKNLSTNFDKK 234

Query: 249 LLHQ----AGIETNLRAENLSIEDFCRITNILTDNQD 281
            L +      + TNLR   L ++ + +I  I  ++ +
Sbjct: 235 ALEEIFENMNLATNLRPHELDVDSYLKIFEITKEDNE 271


>gi|294464127|gb|ADE77582.1| unknown [Picea sitchensis]
          Length = 351

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 132/294 (44%), Gaps = 24/294 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +  HS   +L      P+K +GQ+++L+  I + + + +   +G  V+EIG G G LT  
Sbjct: 63  DDYHSTLKVLQSRGRFPRKSLGQHYMLNSAINELMVKEAQLKEGDVVLEIGPGTGALTNA 122

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------- 113
           L+  GA  V  IEKD     ++ +  + +  +++++Q+D  +   E              
Sbjct: 123 LVNAGAH-VFAIEKDAHMAMLVSERFNNN-GKVKVVQEDFTRCHIEPQILSFSTSIAPGS 180

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYG 172
           N     ++++NLP+NI T +L   +        +  + LL Q E+  R+  +   +P Y 
Sbjct: 181 NYGQMAKVVSNLPFNIATDVLKLLL---PMGDMFSHVVLLLQDEMALRVVGSSPGTPEYR 237

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESLKKITQEA 229
           ++++   + +     F +    FFP P V + V+ F        P     +    +   A
Sbjct: 238 QINIFVNFYSVPEYKFKVQRTNFFPQPNVDAAVVVFKLKQVVDYPHVASPKGFFSMVNSA 297

Query: 230 FGKRRKTLRQSLKRLGG----ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           F  +RK LR+SL+ L      E+ L   G+    R   L ++DF R+ N+L   
Sbjct: 298 FNGKRKMLRKSLQHLCASRDIESALRTLGLPETSRPGELEMDDFVRLYNLLNSQ 351


>gi|283953677|ref|ZP_06371208.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794718|gb|EFC33456.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           414]
          Length = 265

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 14/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   +V   E 
Sbjct: 2   VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMDNIIEIGPGLGDLTQDLLKIS--QVKAYEI 58

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D    PILK    +     +  +I  +A +           P  ++ANLPY + + ++  
Sbjct: 59  DNDLIPILKKKFQKELECGKFNLIHQNASEAFSASL--DEKPYFLVANLPYYVASHIILK 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ QKE+ E+  A++ +  +  L +L+    +  ++FD++P  F 
Sbjct: 117 ALEDKNCL----GLIVMVQKEMAEKFCAKEGNSEFSSLGILSAMICERKILFDVNPQCFN 172

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV STVI  I   +    C +E+ K   ++ F   RK L  +LK    +   +L   
Sbjct: 173 PPPKVMSTVISLIKIKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTHKAKVLEVLSIL 232

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
           G++ N+R   + ++ + +I + L D
Sbjct: 233 GLKENIRPHEICVDSYLKIYDKLKD 257


>gi|308190242|ref|YP_003923173.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma
           fermentans JER]
 gi|307624984|gb|ADN69289.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma
           fermentans JER]
          Length = 258

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 119/268 (44%), Gaps = 16/268 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
              K+  KK  GQNFL D N++ KI E      G  ++EIG G G LT+ +L   A++  
Sbjct: 3   QENKLKAKKRYGQNFLKDQNVISKIIELIKPQ-GEKILEIGPGRGALTK-ILNQQAKEFT 60

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
             E D+     L+  +  + N  +I+Q D L  D EK+ +      ++ N+PY I + ++
Sbjct: 61  AFEIDRDMVDYLQKNNILNQN--QIVQGDFLIADLEKYKD----YVVVGNIPYYITSDII 114

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +    +   ++   L+ Q EV +R+ A+ N   Y +LS+   +         +    
Sbjct: 115 FKLL---DYRHNFKKAILMVQNEVAQRLVAKPNQNDYSKLSITVQYCADVKKELFVKKTY 171

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--- 251
           F P PKV S ++      N      E+LK   +  F  RRK L  +L      + +    
Sbjct: 172 FDPVPKVDSAIVSITFK-NEENDNYENLKDFFKLCFLARRKKLSFALATKYSNDKIKIAY 230

Query: 252 -QAGIETNLRAENLSIEDFCRITNILTD 278
            +  ++   R + L ++    + + L +
Sbjct: 231 NKLNLKELTRIQELDLKTILALYDCLEN 258


>gi|150402155|ref|YP_001329449.1| dimethyladenosine transferase [Methanococcus maripaludis C7]
 gi|166221676|sp|A6VFS2|RSMA_METM7 RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|150033185|gb|ABR65298.1| dimethyladenosine transferase [Methanococcus maripaludis C7]
          Length = 263

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 125/269 (46%), Gaps = 23/269 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K +GQ FL D N +KK    +   D   V+E+G G G LT+ L  + A+KV VIE D++
Sbjct: 4   SKKLGQCFLKDKNFVKKAINRAELTDKDIVLEVGLGEGALTKELAKI-AKKVYVIELDER 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P   +I+S+  N +EII  DALKVD +         +I+ANLPY I + + F ++  D
Sbjct: 63  LKPFADEITSEFEN-VEIIWSDALKVDLKTL----GFNKIVANLPYQISSPITFKFLEED 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +E   L++Q E  +R+  + ++  Y RLSV   +      +  + P  F P P V
Sbjct: 118 -----FEVAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDV 172

Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL---------KRLGGENLLH 251
            S ++             E    K+ +  F  R +T++++L         +R   + +L 
Sbjct: 173 NSAIVKLTKREPKYHVKDEEFFKKVLKAIFQHRNRTIKRALIDSSHEIGIERNILKEILE 232

Query: 252 QAG--IETNLRAENLSIEDFCRITNILTD 278
           +     E   R      E    ++N+L D
Sbjct: 233 KIENKFEFTERVFKTPPEKIGYLSNLLYD 261


>gi|158312623|ref|YP_001505131.1| dimethyladenosine transferase [Frankia sp. EAN1pec]
 gi|158108028|gb|ABW10225.1| dimethyladenosine transferase [Frankia sp. EAN1pec]
          Length = 291

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/282 (26%), Positives = 118/282 (41%), Gaps = 17/282 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               ++ +     + P K  GQNFL+D N ++++   +        +E+G G G+LT  L
Sbjct: 3   SPADIRELAHALDLRPTKRRGQNFLVDPNTVRRLVRLAAVGPDDVALEVGPGLGSLTLGL 62

Query: 66  LTLGARKVIVIEKDQQF-----FPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPI 119
           +T  A    V   D              + +    RL +++ D L+V+       +++P 
Sbjct: 63  VTEAAAVAAVE-VDPVLAAALPVTAAARLPAAVAARLHVVEADGLRVEPSDLPPAVAAPT 121

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            + ANLPYN+   LL   +      P      ++ Q EV +R+T+      YG  SV   
Sbjct: 122 VLAANLPYNVAVPLLLGLLER---FPSIRRGLVMVQAEVADRLTSPPGGRIYGVPSVKLA 178

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTL 237
           W  +A     +   VF+P P V S ++ F     P         +      AF +RRKTL
Sbjct: 179 WYAQARPAGAVPRPVFWPQPNVDSGLVAFTRRAAPPADAGLRREVFAAVDAAFAQRRKTL 238

Query: 238 RQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRITN 274
           R +L    G     E L   AG++   R E L +E F R+  
Sbjct: 239 RTALAPWAGSPARAEQLARAAGVDPGARGETLDVEAFARLAQ 280


>gi|288869605|ref|ZP_05975193.2| dimethyladenosine transferase [Methanobrevibacter smithii DSM 2374]
 gi|288860560|gb|EFC92858.1| dimethyladenosine transferase [Methanobrevibacter smithii DSM 2374]
          Length = 306

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 138/296 (46%), Gaps = 41/296 (13%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S + K IL+ Y I   K +GQN+L+D N   +I +         V+EIG G G LT  L 
Sbjct: 14  SKTTKAILNEYGIKLNKNLGQNYLIDRNKRDQIIQFGNLTKDDVVLEIGPGIGTLTIELA 73

Query: 67  TLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               +KVI IE+D     IL++    ++ + +++I DDAL V+F KF       +II+NL
Sbjct: 74  KR-VKKVIAIEQDSNICQILENRLKKENIDNVDLINDDALNVEFPKF------DKIISNL 126

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + + F +++ D     ++   L++QKE   R+  +  S  Y RLS +  ++    
Sbjct: 127 PYQISSPITFKFLNYD-----FQLAILMYQKEFASRMNGKVGSKDYSRLSAMLYFKCDVD 181

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-------------PCCLESLKKITQEAFGK 232
           ++  +S   F P PKV STV+   P L  +                 ++  K  +  F  
Sbjct: 182 LLTGVSAESFIPKPKVDSTVVRLTPKLPELNGQLKHLNINEINEKDFKTYSKFVKALFQH 241

Query: 233 RRKTLRQSL------------KRLGGE-NLLHQAGIET--NLRAENLSIEDFCRIT 273
           R K ++ +L            K +  + N + Q  IE   + R  NL+ E+   ++
Sbjct: 242 RNKKVKNALIDSRHIITDLDKKEMKAKLNSIKQKKIEELLSERITNLTPEEILYLS 297


>gi|297618729|ref|YP_003706834.1| dimethyladenosine transferase [Methanococcus voltae A3]
 gi|297377706|gb|ADI35861.1| dimethyladenosine transferase [Methanococcus voltae A3]
          Length = 275

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/268 (27%), Positives = 125/268 (46%), Gaps = 21/268 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K +GQ FL D N +KK    +   +   V+EIG G G LT+ L  + A+KV VIE D++
Sbjct: 13  SKKLGQCFLKDKNFVKKAINRANLNNDDIVLEIGLGEGVLTKELAKV-AKKVYVIELDKR 71

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                 ++  ++PN + II +DALKVD +         +I+ANLPY I + + F ++   
Sbjct: 72  LEIFANEVIKEYPN-VSIIWEDALKVDLDSL----DFNKIVANLPYQISSPITFKFLERK 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                ++   L++Q E  +R+  ++++  YGRLSV   +     M+  + P  F P PKV
Sbjct: 127 K---GFDLAILMYQYEFAKRMAGKEDTKEYGRLSVAVQYSADVKMICKVPPTAFSPKPKV 183

Query: 202 TSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGGENLLHQAGI----- 255
            S ++  +          E + K + +  F  R KT+ ++L     E  L +  +     
Sbjct: 184 DSAIVSLVKKNPEYDVLDEKMFKNLLKALFQHRNKTVGKALVNSAHEIKLSRESVKQFVE 243

Query: 256 ------ETNLRAENLSIEDFCRITNILT 277
                 +   R   L       + N+LT
Sbjct: 244 EYSEAFDFKERVFKLPGFKIGELANLLT 271


>gi|332671564|ref|YP_004454572.1| dimethyladenosine transferase [Cellulomonas fimi ATCC 484]
 gi|332340602|gb|AEE47185.1| dimethyladenosine transferase [Cellulomonas fimi ATCC 484]
          Length = 329

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 125/296 (42%), Gaps = 35/296 (11%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            ++ +     + P K +GQNF+LD   ++KI   +    G  V+E+G G G+LT  LL  
Sbjct: 29  EIRALAERAGVRPTKTLGQNFVLDAGTVRKIVRQADVAAGERVVEVGPGLGSLTLGLLEA 88

Query: 69  GARKVIVIEKDQQFFPILKDISSQH----------------------PNRLEIIQDDALK 106
           GA  V+ +E D     +L +  + H                       +RL ++  DAL+
Sbjct: 89  GAD-VVAVEIDPVLARLLPETVASHVPGLVRVDGPPDGPVVLRDAGGRDRLTVVLRDALE 147

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
           V   +      P+ ++ANLPYN+   +L  ++         E   ++ Q EV +R+ A  
Sbjct: 148 V---EELPGPPPVALVANLPYNVSVPVLLTFLER---FDSLERALVMVQAEVADRLAAPP 201

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC-LESLKKI 225
            S  YG  S    W   A     +   VF+P P V S ++       P+     E +  +
Sbjct: 202 GSRTYGVPSAKAAWYAHARRTATVGRSVFWPVPNVDSALVRLDRREPPVTTATREQVFTV 261

Query: 226 TQEAFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
              AF +RRK LR      +      E  L  AG++   R E L +E F RI   L
Sbjct: 262 VDAAFAQRRKMLRPALATLAGSAAAAEAALVAAGVDPQARGERLDVEAFARIAEHL 317


>gi|330944934|gb|EGH46747.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 189

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 5/186 (2%)

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
              + Q DALK DF         +R++ NLPYNI T L+F+ +   +       +  + Q
Sbjct: 3   NFNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNAS---LIRDMHFMLQ 59

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-P 214
           KEV ER+ A      +GRLS++  +  +   +F++ P  F P PKV S ++  +P+   P
Sbjct: 60  KEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVPYETLP 119

Query: 215 IPCCL-ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
            P      L++I +EAF +RRKTLR +LK L   + +  +G++ +LR E L +  F R+ 
Sbjct: 120 HPAKDHRVLERIVREAFNQRRKTLRNTLKLLLTSDEITASGVDGSLRPEQLDLAAFVRLA 179

Query: 274 NILTDN 279
           + L++ 
Sbjct: 180 DTLSEK 185


>gi|57505363|ref|ZP_00371292.1| dimethyladenosine transferase [Campylobacter upsaliensis RM3195]
 gi|57016499|gb|EAL53284.1| dimethyladenosine transferase [Campylobacter upsaliensis RM3195]
          Length = 260

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 122/266 (45%), Gaps = 16/266 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D  IL KI ++    D   ++EIG G G+LTQ LL +    V   E 
Sbjct: 2   IKAKKQYGQNFLHDKEILTKITQAI-PKDVKKIVEIGPGLGDLTQELLKISP--VKAYEI 58

Query: 79  DQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      L+D   +     +  ++  DA     E F        ++ANLPY I ++L+  
Sbjct: 59  DADLIGFLRDKFQKELKEEKFILLHQDA----SELFCFDEDKYFLVANLPYYIASKLILQ 114

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +  +      + L ++ QKE+  +  A+  S  +G L VL+    +  ++FD+SP  F 
Sbjct: 115 ALEDENC----QGLIVMVQKEMALKFCAKSGSSDFGTLGVLSAMICEREILFDVSPLCFN 170

Query: 197 PSPKVTSTVIHFIPHLNPIPCC-LESLKKITQEAFGKRRKTLRQSLK--RLGGENLLHQA 253
           P PKV S+V+  I        C L+S K   +  F   RK L  +LK  +     L    
Sbjct: 171 PPPKVVSSVMRLIKQKELKQICELDSFKSFLRICFKSPRKQLLSNLKAEKCKLLELFEDL 230

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
           G++ N+R   L +  + +I   L D 
Sbjct: 231 GLKENVRPHELCVNSYLKIYEKLKDQ 256


>gi|150020142|ref|YP_001305496.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429]
 gi|149792663|gb|ABR30111.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429]
          Length = 258

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 121/251 (48%), Gaps = 15/251 (5%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
             L  Y +   K +GQNFL + +I KKI E +   +   V+EIG G G LT+ L+  GA 
Sbjct: 5   DFLKEYNVKLLKGLGQNFLTNTHIAKKIVERADINENDVVLEIGPGAGTLTEFLVLTGA- 63

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           K+I +E D++  PIL +  +++ N +EII  D LK D           +++AN+PY+I  
Sbjct: 64  KIIAVEIDKRLKPIL-ERFNKYDN-IEIIFVDFLKFDVSVL---PKGFKVVANIPYSITG 118

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            +L   + +D     +    L+ QKEVG+R+           LSV+    T    +FD+S
Sbjct: 119 MILKKILFSD-----FSKAVLMVQKEVGDRLLLPPG-ADRNFLSVVVQSYTMVRKVFDVS 172

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
              F P PKV S V+ F          ++       + FG +RKTL+ +LKR        
Sbjct: 173 KGNFVPRPKVDSVVLEFE-KTEDFKYDIKEFWDFVSKCFGAKRKTLQNNLKRFTRIECFS 231

Query: 252 QAGIETNLRAE 262
           +   +   R +
Sbjct: 232 K--FDLKKRPQ 240


>gi|242045762|ref|XP_002460752.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor]
 gi|241924129|gb|EER97273.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor]
          Length = 356

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 15/248 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +    K  GQ+ L +  +L  I   +    G  ++E+G G GNLT  LL   A +V+ +E
Sbjct: 41  RFRLHKPRGQHLLTNPRVLDAIVRRAAISSGDAILEVGPGTGNLTARLLASHAARVVAVE 100

Query: 78  KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    +   ++     ++L +I  DA++V+F +F         +AN+PY I + L+ 
Sbjct: 101 IDPRMVESVTARAAALGLADKLTVIAGDAVEVEFPEF------DVCVANIPYGISSPLIA 154

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +     P  + + TLL QKE   R+ A      Y RL+          ++ D+S   F
Sbjct: 155 KLLFG---PYRFRTATLLLQKEFARRLVATPGDGEYNRLAANVRLVADVRLLMDVSKRDF 211

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
            P P+V S+++   P        +      T+  FG++ KTL    K+   + ++ +   
Sbjct: 212 VPMPRVDSSLVEIRPRGIAPGVDVSEWLAFTRACFGQKNKTLGAIFKQ---KRMVMEL-F 267

Query: 256 ETNLRAEN 263
             + RAE 
Sbjct: 268 GRSQRAEE 275


>gi|319777610|ref|YP_004137261.1| dimethyladenosine transferase [Mycoplasma fermentans M64]
 gi|238810000|dbj|BAH69790.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038685|gb|ADV34884.1| Dimethyladenosine transferase [Mycoplasma fermentans M64]
          Length = 258

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 118/268 (44%), Gaps = 16/268 (5%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
              K+  KK  GQNFL D N++ KI E      G  ++EIG G G LT+ +L   A++  
Sbjct: 3   QENKLKAKKRYGQNFLKDQNVINKIIELIKPQ-GEKILEIGPGRGALTK-ILNQQAKEFT 60

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
             E DQ     L+  +  + N  +I+Q D L  D +K+        ++ N+PY I + ++
Sbjct: 61  AFEIDQDMVDYLQKNNILNQN--QIVQGDFLIADLKKY----KSYVVVGNIPYYITSDII 114

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +    +   ++   L+ Q EV +R+ A+ N   Y +LS+   +         +    
Sbjct: 115 FKLL---DYRHNFKKAILMVQNEVAQRLVAKPNQNDYSKLSITVQYCADVKKELFVKKTY 171

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--- 251
           F P PKV S ++      N      E+LK   +  F  RRK L  +L      + +    
Sbjct: 172 FDPVPKVDSAIVSITFK-NEANDNYENLKDFFKLCFLARRKKLSFALATKYSNDKIKIAY 230

Query: 252 -QAGIETNLRAENLSIEDFCRITNILTD 278
            +  ++   R + L ++    + + L +
Sbjct: 231 NKLNLKELTRIQELDLKTILALYDCLEN 258


>gi|11499372|ref|NP_070611.1| dimethyladenosine transferase (ksgA) [Archaeoglobus fulgidus DSM
           4304]
 gi|27151555|sp|O28491|RSMA_ARCFU RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|2648762|gb|AAB89464.1| dimethyladenosine transferase (ksgA) [Archaeoglobus fulgidus DSM
           4304]
          Length = 244

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 24/256 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K +GQ+ L+D  ++ +I   +   +   V+E+G G GNLT  LL      V+ IEKD  
Sbjct: 4   RKSLGQHMLVDRRVISRIVGYAELSEDDVVLEVGCGTGNLTSALLRKC--SVVGIEKDPL 61

Query: 82  FFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               L++  S      R  +IQ DALKVDF  F       + +AN+PY I + L F  + 
Sbjct: 62  MVKRLRERFSDFIGKGRFRLIQGDALKVDFPYF------TKFVANIPYKISSPLTFKLLK 115

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            D     +    +++Q+E  ER+  + N     RL V++    KA ++  + P  F P P
Sbjct: 116 TD-----FRLAVVMYQREFAERLCGEDN-----RLGVISKTYCKAEILEIVKPSSFNPPP 165

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK---TLRQSLKRLGGENLLHQAGIE 256
           KV S ++  +P         E  +K    AF  RRK    + Q  ++  G  L     + 
Sbjct: 166 KVESAIVRIVPEPEVFVENRELFEKFVTFAFSMRRKRMGKIVQEFRKRYGVELAVNKNLA 225

Query: 257 TNLRAENLSIEDFCRI 272
              R E L    F  I
Sbjct: 226 EK-RPEELGARKFAEI 240


>gi|302654957|ref|XP_003019274.1| hypothetical protein TRV_06678 [Trichophyton verrucosum HKI 0517]
 gi|291182988|gb|EFE38629.1| hypothetical protein TRV_06678 [Trichophyton verrucosum HKI 0517]
          Length = 364

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 26/233 (11%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT  +H        +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A
Sbjct: 25  KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83

Query: 71  RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI +E D +    L       P   RLE++  D +K +                    
Sbjct: 84  KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTE-------------------- 123

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L F  ++ +  P       L+FQ+E   R+ A+     Y RLSV      K   + 
Sbjct: 124 ISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 180

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            +  + F P P V S+V+  +P +       +    + + AF ++ KTLR S 
Sbjct: 181 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 233


>gi|302509638|ref|XP_003016779.1| hypothetical protein ARB_05072 [Arthroderma benhamiae CBS 112371]
 gi|291180349|gb|EFE36134.1| hypothetical protein ARB_05072 [Arthroderma benhamiae CBS 112371]
          Length = 364

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 26/233 (11%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           KT  +H        +GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A
Sbjct: 25  KTKAAHNIFRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEVGPGSGNLTVKILE-KA 83

Query: 71  RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI +E D +    L       P   RLE++  D +K +                    
Sbjct: 84  KKVIAVELDPRMAAELTKRVQGKPEQKRLEVLLGDVMKTE-------------------- 123

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L F  ++ +  P       L+FQ+E   R+ A+     Y RLSV      K   + 
Sbjct: 124 ISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYSRLSVNAQMWAKIDHIM 180

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            +  + F P P V S+V+  +P +       +    + + AF ++ KTLR S 
Sbjct: 181 KVGKNNFKPPPAVESSVVRIVPKVPRPDISYDEWDGLLRIAFVRKNKTLRSSF 233


>gi|150399067|ref|YP_001322834.1| dimethyladenosine transferase [Methanococcus vannielii SB]
 gi|166221678|sp|A6UP00|RSMA_METVS RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|150011770|gb|ABR54222.1| dimethyladenosine transferase [Methanococcus vannielii SB]
          Length = 267

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 23/268 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K +GQ FL D N +KK  +S+   +   V+E+G G G LT+ L  L A+ V VIE D +
Sbjct: 4   SKKLGQCFLKDKNFVKKAIKSADITENDIVLEVGLGEGALTKELAKL-AKFVYVIELDMR 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             P    I S+  N +++I +DALKVD ++        +I+ANLPY I + + F ++  D
Sbjct: 63  LEPFANQIMSEFKN-VKVIWNDALKVDLKEL----GFNKIVANLPYQISSPITFKFLEND 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                ++   L++Q E  +R+  + ++  Y RLSV   + +    +  + P  F P P V
Sbjct: 118 -----FDVAVLMYQYEFAKRMIGKPDTDEYSRLSVSIQYNSDVEFICKVPPTAFSPKPDV 172

Query: 202 TSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKRRKTLRQSL---------KRLGGENLLH 251
            S ++             E   + +    F  R +T++++L         +R   + +L 
Sbjct: 173 NSAIVKLTKREPLFHIENEEFFRNVLNAIFQHRNRTVKRALIDSSHEMNIERERLKEILE 232

Query: 252 --QAGIETNLRAENLSIEDFCRITNILT 277
             +   + + R   L+ E    ++NIL 
Sbjct: 233 NIKLDFDFSERVFKLAPEKIGELSNILY 260


>gi|171186169|ref|YP_001795088.1| dimethyladenosine transferase [Thermoproteus neutrophilus V24Sta]
 gi|170935381|gb|ACB40642.1| dimethyladenosine transferase [Thermoproteus neutrophilus V24Sta]
          Length = 227

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 115/253 (45%), Gaps = 33/253 (13%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++   Q+FL D +  + IAE      G+ V+E+G G G LT  L    AR V  IE D++
Sbjct: 3   RRRWSQHFLRDPSAARYIAEL--VPPGLDVLEVGPGRGALTIPLAER-ARTVYAIEVDRR 59

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +L+  +   P  + +I+ DAL+V++ +          ++N+PY+I + LL       
Sbjct: 60  LAELLRKTA---PPNVVVIEGDALEVEWPRA------DYFVSNIPYSITSPLLMKLARHR 110

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                     +  Q+EV ER+ A     +YGRL+V      +  ++  + P VF P P+V
Sbjct: 111 MP------AVVTVQREVAERLAAAPGGENYGRLTVAVQCHYEVEVLRTLPPRVFQPPPRV 164

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI-ETNLR 260
            S V+   P   P     +  ++ T   F  RRKTLR+              G+ E + R
Sbjct: 165 YSAVVRLTPR-PPCVEDFDGFQRFTAWLFSARRKTLRR-------------LGLGEGDRR 210

Query: 261 AENLSIEDFCRIT 273
              LS+E+   + 
Sbjct: 211 VYQLSLEEIVELY 223


>gi|299740974|ref|XP_001834135.2| rRNA (adenine-N6,N6-)-dimethyltransferase [Coprinopsis cinerea
           okayama7#130]
 gi|298404496|gb|EAU87730.2| rRNA (adenine-N6,N6-)-dimethyltransferase [Coprinopsis cinerea
           okayama7#130]
          Length = 318

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ+ L +    +KI +++       V+E+G G GNLT  +L   A+ V  +E D +  
Sbjct: 37  RFGQHILKNTQTAQKIVDAANLKPTDKVLEVGPGTGNLTVKILE-KAKHVTAVEMDPRMA 95

Query: 84  PILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             +       P   +LE+I  D +K +   F         I+N PY I + L+F  +S  
Sbjct: 96  AEVLKRVQGTPEQRKLEVIIGDFVKAEIPYF------EVCISNTPYQISSPLVFRLLSHR 149

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P +    L+FQ+E   R+ A+  +  + RLS       K   +  ++ + F P P+V
Sbjct: 150 ---PLFRVAILMFQREFALRLVARPGTSLWSRLSANVQLYAKVDNIMHVNRNDFRPPPQV 206

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            S+VI  +P   P P   E    + +  F +  KT+R + +  G   +L Q
Sbjct: 207 ESSVIRLVPLDPPPPVKFEEFDGLNRIIFSRPNKTVRGNFQAKGVMKMLEQ 257


>gi|212543995|ref|XP_002152152.1| dimethyladenosine transferase [Penicillium marneffei ATCC 18224]
 gi|210067059|gb|EEA21152.1| dimethyladenosine transferase [Penicillium marneffei ATCC 18224]
          Length = 401

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  I   I + +   +   V   G G G LT+ +L   A+    IE 
Sbjct: 33  FKFNTDIGQHILKNPGIADAIVDKANIKEHEVV---GPGTGVLTRRILA-KAKSCTAIEL 88

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L  +    P   +L II  D +KVD ++  +       I+N PY I + L+F 
Sbjct: 89  DPRMAAELTKMVQGTPMQKKLRIILGDFIKVDLKEIGHFD---VFISNTPYQISSPLVFK 145

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+ Q+E  +R+ A+     Y RLSV   +    + +  +  + F 
Sbjct: 146 LLAMPRPP---RVSVLMVQREFAQRLIARPGDAMYSRLSVNAQFHAICSHILKVGKNNFS 202

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P+V S+V+   P  +      E L  + +  F ++ KTLR S        L+ +
Sbjct: 203 PPPQVESSVVKIEPRPDRPDISWEELDGMLRICFNRKNKTLRSSFFVKQVRELIER 258


>gi|327262970|ref|XP_003216295.1| PREDICTED: probable dimethyladenosine transferase-like [Anolis
           carolinensis]
          Length = 328

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 15/241 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           + +       V+E+G G GN+T  +L    ++V+  E D +    L+      P  N+LE
Sbjct: 65  KHASLYPTDVVLEVGPGTGNMTVKMLE-KVKRVVACEVDVKLAGELQKRVQGTPLANKLE 123

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           I   D LK D   F         +ANLPY I +  +F  +      PF+    L+FQ+E 
Sbjct: 124 IKIGDVLKSDLPFF------DACVANLPYQISSPFVFKLL---LHRPFFRCAVLMFQREF 174

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
             R+ A+  SP Y RLSV T    +   +  +  + F P PKV S+V+   P   P P  
Sbjct: 175 ALRLVAKPGSPLYCRLSVNTQLLARVDHLMKVGKNNFKPPPKVESSVVRIEPKNPPPPIN 234

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA-GIETNLRAENLSIEDFCRITNILT 277
            +    + +  F ++ KTL         + LL Q   I  +    NL I +   I N++ 
Sbjct: 235 FQEWDGLLRIVFVRKNKTLAAVFNSTAVKRLLEQNYRIHCSQ--NNLEIPENFNIGNLIH 292

Query: 278 D 278
           +
Sbjct: 293 E 293


>gi|229009551|ref|ZP_04166778.1| Dimethyladenosine transferase [Bacillus mycoides DSM 2048]
 gi|229053888|ref|ZP_04195323.1| Dimethyladenosine transferase [Bacillus cereus AH603]
 gi|229131049|ref|ZP_04259962.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST196]
 gi|229165030|ref|ZP_04292826.1| Dimethyladenosine transferase [Bacillus cereus AH621]
 gi|228618415|gb|EEK75444.1| Dimethyladenosine transferase [Bacillus cereus AH621]
 gi|228652386|gb|EEL08310.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST196]
 gi|228721429|gb|EEL72949.1| Dimethyladenosine transferase [Bacillus cereus AH603]
 gi|228751695|gb|EEM01494.1| Dimethyladenosine transferase [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 19/226 (8%)

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRI 121
           +   A+KV+  E DQ+  PIL +  + + N + +I  D LK D  + F         + +
Sbjct: 1   MAKRAKKVVAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMV 59

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +ANLPY I T +LF  +             ++ QKEVG+R+ A+  +  YG LS+   + 
Sbjct: 60  VANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYY 116

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQ 239
           T+   +  +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  
Sbjct: 117 TEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMN 176

Query: 240 SLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +L              + +L + GI+   R E LSIE+F  ++N L
Sbjct: 177 NLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNAL 222


>gi|169351499|ref|ZP_02868437.1| hypothetical protein CLOSPI_02279 [Clostridium spiroforme DSM 1552]
 gi|169291721|gb|EDS73854.1| hypothetical protein CLOSPI_02279 [Clostridium spiroforme DSM 1552]
          Length = 268

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 140/282 (49%), Gaps = 20/282 (7%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M       + K IL  Y +   K  GQNFL+D+N++ KI + +     + VIE+G G G 
Sbjct: 1   MKDIATLSTTKYILDKYNLNALKKYGQNFLIDINVVNKIIKETRIDKDVAVIEVGPGIGA 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LTQML   G  KVI  E D++F P+  +      + LEII  D +K +  K         
Sbjct: 61  LTQMLSRYGG-KVISFEIDERFRPVYDEFL--IADNLEIIFGDFMKQEINKIVVDLKKTY 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           S + ++ANLPY I T ++   I +D      + L ++ QKEV  ++T+   +P    L +
Sbjct: 118 SKVYLVANLPYYITTAIIEKVILSDCN---IDQLIVMVQKEVALKMTSDYKNP----LLL 170

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           +     K   +F ++ +VF P+P V S +I  +    P     +    I    F +RRKT
Sbjct: 171 MIKDMGKVEYLFTVNKNVFLPAPHVDSAIIKIVLTKKPNLKLYD----ILNVCFKQRRKT 226

Query: 237 LRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +  +LK+       +L +  I+T  R+E LS+ DF  IT+++
Sbjct: 227 IYNNLKKEYSNALEILEKCKIDTKKRSEELSLNDFKNITDMI 268


>gi|260221806|emb|CBA30735.1| hypothetical protein Csp_C25050 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 728

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 115/253 (45%), Gaps = 31/253 (12%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +     G  ++EIG G   LTQ L+    R + VIE D+     L+     HP +L +I+
Sbjct: 489 AINPQPGDPMVEIGPGLAALTQPLVERLGR-LTVIELDRDLAKRLR----SHP-QLHVIE 542

Query: 102 DDALKVDFEK-------------FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            D L VDF               F  ++  +R++ NLPYNI T +LF+ +         E
Sbjct: 543 SDVLNVDFSSADIAPAAPENAATFATVARKLRVVGNLPYNISTPILFHLLDYVEC---IE 599

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
               + QKEV +R+ A  +S  + RLSV+  WR     +  + P  F P P+V S V+  
Sbjct: 600 DQHFMLQKEVIDRMVAPPDSSDFSRLSVMLQWRYAMEDVLFVPPECFDPPPRVNSAVVRM 659

Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG----IETNLRAENL 264
           +P   P    +    ++ Q AF +RRK LR +L        L Q G     +   RA+ +
Sbjct: 660 VPLAQPPVLDVGLFSEMVQVAFSQRRKLLRHTLG-----AWLEQKGFSGQFDVQRRAQEV 714

Query: 265 SIEDFCRITNILT 277
            +E++  +   L 
Sbjct: 715 PVEEYVALVQSLK 727


>gi|225714488|gb|ACO13090.1| Mitochondrial dimethyladenosine transferase 1, mitochondrial
           precursor [Lepeophtheirus salmonis]
          Length = 330

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 134/283 (47%), Gaps = 23/283 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            +P+K + QNF+LD   L ++++ +GSL   TV+E+G GPG +T+ +L  GA+KV VIEK
Sbjct: 3   FVPRKKLSQNFILDPKTLSRLSKVTGSLYNKTVVEVGPGPGGITRAILEQGAQKVFVIEK 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------SPIRIIANLPYNI 129
           D +F P L  +     NRL I   D L  + +K  N             IR+I NLP+N+
Sbjct: 63  DSRFLPSLDLLREASGNRLSIKIGDCLHFNTQKLLNSDLKSNWPDQVPNIRLIGNLPFNV 122

Query: 130 GTRLLFNWISADTWPPFWESL-----TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
            T  +       +      S       L FQ EV  R+ A     H  RLSV+     K 
Sbjct: 123 ATPYVVKLFECMSDRSNIFSFGRVPSILTFQHEVAYRLIAPPGDKHRCRLSVMAQNYAKI 182

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTL-RQSLK 242
              + +    F P+P+V   V   IP   P I    + L+++       ++K++ R SL+
Sbjct: 183 DYKYTLPGAAFVPTPEVNVGVAVLIPLSVPYIDVPFKFLERVVTTIMMHKQKSVFRTSLR 242

Query: 243 RLGGE-------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               E        LL  AG+  + R  +L+++DF RIT    D
Sbjct: 243 LFPSEVRGKMAMQLLDVAGVSKDKRPLDLTMDDFARITYTYQD 285


>gi|307722062|ref|YP_003893202.1| dimethyladenosine transferase [Sulfurimonas autotrophica DSM 16294]
 gi|306980155|gb|ADN10190.1| dimethyladenosine transferase [Sulfurimonas autotrophica DSM 16294]
          Length = 271

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 18/268 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++   ++ KK  GQNFL D ++L++I E+    +   ++EIG G G+LT+ L  +  + V
Sbjct: 1   MNRESVVAKKKFGQNFLKDQSVLRQIVEAM-PKNDNKIVEIGPGLGDLTKFL--VDVKSV 57

Query: 74  IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
              E D     +L+    +     RL I   D L+    +   +S P  ++ANLPY I T
Sbjct: 58  EAFEVDTDLCKLLQSTFKEEIATKRLHINCGDVLEAWQSEL--VSEPYDLVANLPYYIAT 115

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   ++     P  +++ ++ Q EV E+  A      +G L V+      A ++  + 
Sbjct: 116 NIILKALAD----PMCKNILVMVQLEVAEKFCASSGEKVFGSLGVIAQSVGTAQIVVKVP 171

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--- 248
           P  F P PKV S V       +      +  + + + AF + RKTL ++L     +    
Sbjct: 172 PTAFDPQPKVDSAVFLIQKKRDR---NDKEFEDMLRVAFSQPRKTLVKNLSSKYDKKLLQ 228

Query: 249 -LLHQAGIETNLRAENLSIEDFCRITNI 275
             L +  +   +R   ++  D+ ++  +
Sbjct: 229 EALEELELALTIRPHQVNTNDYHQLYKL 256


>gi|149199506|ref|ZP_01876541.1| Dimethyladenosine transferase [Lentisphaera araneosa HTCC2155]
 gi|149137441|gb|EDM25859.1| Dimethyladenosine transferase [Lentisphaera araneosa HTCC2155]
          Length = 272

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 133/275 (48%), Gaps = 10/275 (3%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   L + L  Y I P K  GQNFL+D N+L  +  S     G T++E+G G G LT+ +
Sbjct: 2   KKAELLSTLEKYGIAPAKSRGQNFLIDNNLLDAMCRSMDIQAGETILEVGPGAGVLTREM 61

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L LG   V  +E D      L +       +  + + DA KVD+++  ++    R +ANL
Sbjct: 62  LKLGG-IVHAVEFDFAIQRYLSENLEH--EKFTLHKGDACKVDYKEILDLPREFRCLANL 118

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + +    +S    PP    +  L Q+E+ ER+ A  ++ +YG L+V         
Sbjct: 119 PYAISS-IFIAIMSELESPPL--EMYFLLQREMAERLAADNSTKNYGSLTVRVQALYDVN 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
           ++  + P VFFP PKV S  +      NP  P  L+ L  I + AF +RRK   + +K  
Sbjct: 176 ILRIVPPEVFFPPPKVQSAFVTLKLKENPPSPKVLKKLNSIVRAAFSQRRKVAFKLMKGT 235

Query: 245 GG---ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            G   E      G++   RAE ++IE + ++   L
Sbjct: 236 AGPKLEEAYETVGLDRKARAEQITIEQYIQLAETL 270


>gi|327400294|ref|YP_004341133.1| Ribosomal RNA small subunit methyltransferase A [Archaeoglobus
           veneficus SNP6]
 gi|327315802|gb|AEA46418.1| Ribosomal RNA small subunit methyltransferase A [Archaeoglobus
           veneficus SNP6]
          Length = 250

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 18/254 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ ++   I ++IA  +      TV+E+G G G LT +LL   A KV  IE D +F
Sbjct: 5   KSKGQH-IVSKAIARRIAGYAELSKKDTVLEVGCGTGVLTSVLLER-AGKVYGIEIDARF 62

Query: 83  FPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +L++  ++     R  +I  DA+KV+F  F       + ++N+PY I + L F  +  
Sbjct: 63  VKLLQEKFAKEIDEGRFILIHGDAMKVEFPPF------NKFVSNIPYFISSPLTFKLLRH 116

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D     ++   +++Q+E  ER+ A+K   +YGRLSV+     K  ++  +S   F P P 
Sbjct: 117 D-----FDVAVVMYQREFAERLVARKGE-NYGRLSVVVKAYAKPEIVEYVSRKAFRPPPS 170

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--LLHQAGIETN 258
           V S V+  I         L+  + + +  F +RRK L + L          L        
Sbjct: 171 VDSAVVRLIKKPEIEVENLQIFEDLVRYCFSRRRKQLGKILDEWMESRGIWLEVPEELRR 230

Query: 259 LRAENLSIEDFCRI 272
           LR E++  E +  I
Sbjct: 231 LRPEDIEPEVYAEI 244


>gi|291276278|ref|YP_003516050.1| putative dimethyladenosine transferase [Helicobacter mustelae
           12198]
 gi|290963472|emb|CBG39302.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Helicobacter mustelae 12198]
          Length = 260

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 16/267 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
               KK  GQNFL D + + KI +S         ++EIGAG G+L+  LL L   K    
Sbjct: 2   GYQAKKKFGQNFLKDKDCIHKIIQSIPNIHTDEQIVEIGAGLGDLSDELLKLYPIK--AY 59

Query: 77  EKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           E D     +L+       +  RL++I  D L +   K +    P  +++NLPY + T ++
Sbjct: 60  EIDSDLCSLLRKKYHSALDSARLKLIHQDVLDLPNSKGWLHQEPYVLVSNLPYYVATHII 119

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
              +      P  +   ++ QKEV +R  A+    H+  LS+LT    + + +FD+    
Sbjct: 120 LKILKD----PLCQGFVVMTQKEVAQRFCAKSGESHFCALSILTQTFGQVSYLFDVPAIA 175

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH--- 251
           F P P+VTS V  F  +   I    E  + + + AF   RK L ++L     + +L    
Sbjct: 176 FEPVPRVTSAVFSFKKN---IAMIDEDFENMLKIAFCAPRKKLLKNLATHYDKTVLQKVF 232

Query: 252 -QAGIETNLRAENLSIEDFCRITNILT 277
            +  I  ++RA  L   ++ +I   + 
Sbjct: 233 MELRIPLDVRAHQLENSNYHQIFEKIR 259


>gi|256384236|gb|ACU78806.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385069|gb|ACU79638.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455258|gb|ADH21493.1| dimethyladenosine transferase [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 266

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 15/270 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KKY GQNF+ DLN++ KI +         +IEIG G G LT+ L+     KV+VIE 
Sbjct: 1   MKAKKYYGQNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGALTKELVKRF-DKVVVIEI 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136
           D+    ILK   +   + LEIIQ D L++D ++  +      I II+N PY I + +LF 
Sbjct: 60  DKDMVEILKTKFNH--SNLEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +              + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+
Sbjct: 118 TL---QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFY 174

Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENL 249
           P PKV S +I    +          +      +  F  +RKT           +      
Sbjct: 175 PIPKVDSAIISLTFNDIYKKQVNNDKKFIDFVRLLFNNKRKTILNNLNNIIQNKNKALEY 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+   I +NLR E L I+ + ++ N++ ++
Sbjct: 235 LNTLNISSNLRPEQLDIDQYIKLFNLIYNS 264


>gi|325957949|ref|YP_004289415.1| Ribosomal RNA small subunit methyltransferase A [Methanobacterium
           sp. AL-21]
 gi|325329381|gb|ADZ08443.1| Ribosomal RNA small subunit methyltransferase A [Methanobacterium
           sp. AL-21]
          Length = 273

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 28/274 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL    I   K  GQN+L++ +IL KI ++S       V+EIGAG G LT  L    A K
Sbjct: 8   ILKQNGIKLDKRKGQNYLVNRDILSKIIQNSELSKNDRVLEIGAGIGTLTIPLAK-NAGK 66

Query: 73  VIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           V  +E+D +   +LK    +   + +E+I +DA K+D           ++I+NLPY I +
Sbjct: 67  VYAVEQDGKAANVLKKRLEKLELDNVEVIVEDATKMDLPSV------NKVISNLPYQISS 120

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            + F  +        +E   L++QKE  +R+ A     +Y RLSV+    ++A ++F +S
Sbjct: 121 PITFKILENP-----FEMAVLMYQKEFAQRMVASPGDRNYSRLSVMMYLYSEAEILFQVS 175

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGE-NL 249
            + FFP PKV S VI   P    I   ++     +T+  F  ++K +R +L     E   
Sbjct: 176 ENDFFPKPKVASAVIKMQPK---IDVDIDPFFVDVTRAMFQHKKKKIRNALIDSYHEIGD 232

Query: 250 LHQAGIET----------NLRAENLSIEDFCRIT 273
           + ++ ++T          N R   +S ED  +I+
Sbjct: 233 VEKSDLKTIISQLDQTKMNERVFKMSPEDLLKIS 266


>gi|46121341|ref|XP_385225.1| hypothetical protein FG05049.1 [Gibberella zeae PH-1]
          Length = 346

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  I   I   +      TV+EIG G G LT  +L   A+ V  +E 
Sbjct: 26  FKFNTNIGQHILKNPGIADTIVAKAYLKPTDTVLEIGPGTGVLTTRILEQ-AKAVKAVEL 84

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LEII  D  K+D  +          I+N PY I + ++  
Sbjct: 85  DTRMAAELTKRVQGGPLQQKLEIIMGDFAKLDVVQAL--PPIDVCISNTPYQISSIIVSK 142

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            IS    P       L+ Q+E G R+ A+     Y RLSV T + +K +M+  +  + F 
Sbjct: 143 LISMPKPP---RVSILMVQREFGLRLCARAGDSLYSRLSVNTQFTSKVSMVAKVGKNNFS 199

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           P P+V S V+   P  +     LE L  + +  F ++ KTLR S 
Sbjct: 200 PPPEVESVVVRIEPRTDVPAVGLEELDGVLRICFSRKNKTLRASF 244


>gi|76802475|ref|YP_327483.1| dimethyladenosine transferase [Natronomonas pharaonis DSM 2160]
 gi|119365037|sp|Q3IPM0|RSMA_NATPD RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|76558340|emb|CAI49930.1| probable dimethyladenosine transferase [Natronomonas pharaonis DSM
           2160]
          Length = 274

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 115/253 (45%), Gaps = 25/253 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           Q+FL+D  +L ++            V+EIG G G LT  LL + A +V VIE+D      
Sbjct: 21  QHFLIDDRVLDRLPGYLPDSADTDHVLEIGGGTGALTDRLLDV-ADRVTVIERDPGLATF 79

Query: 86  LKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           L D  +       L +I+ DAL+V    F         ++NLPY + + + F  +     
Sbjct: 80  LTDEFADEIEAGSLTVIEGDALEVPLPDF------TASVSNLPYGVSSEIAFRLL----- 128

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P    L L+FQ+E  ER+ A+  +  YGRLSV  G      ++  +    F P P V S
Sbjct: 129 -PEKRPLVLMFQQEFAERMAAEPGTDEYGRLSVTAGHYADVEVVEPVPKEAFSPPPAVES 187

Query: 204 TVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRL-------GGENLLHQAGI 255
            V+   P   P     + L  ++ +  F +RRKT+R +++           E ++  AG 
Sbjct: 188 AVVRTTPREPPYEVPDDELFMRLVRAVFTQRRKTMRNAVRNTTHISGIEDAEAVVEAAGE 247

Query: 256 ET-NLRAENLSIE 267
           +  + RA N+  E
Sbjct: 248 DLMSKRAGNVPPE 260


>gi|82705284|ref|XP_726907.1| dimethyladenosine transferase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482506|gb|EAA18472.1| dimethyladenosine transferase, putative [Plasmodium yoelii yoelii]
          Length = 423

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 86/328 (26%), Positives = 146/328 (44%), Gaps = 58/328 (17%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGS------------------- 45
           +   ++KT+L   +  PK+ +GQN+L D NI+KK+ ++                      
Sbjct: 95  DDEKNIKTLLPSREFKPKRSLGQNYLKDENIIKKMVQAIELDASQFVLMKEKKKKILLKS 154

Query: 46  -----------------------------LDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
                                         +G  +IE+G G G L++ L     + +  I
Sbjct: 155 KKDKIKDETDEQNKLKINENNCKNMESLKNEGNGIIELGCGLGQLSKHLFK-KYKNMTAI 213

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLF 135
           E D +   I+           + I DD L+++++    N ++ + +I NLP+ I +++LF
Sbjct: 214 EIDSRALTIISRTMPG----FDFIHDDVLQINYKDLSINKNTKLSVIGNLPFYITSQILF 269

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +    +  + E   +  Q EVG+RI A+ N   Y  LS+L    T   ++F I  + F
Sbjct: 270 CLL---DFYKYIEQAVVTIQYEVGQRIIAKPNDKDYSILSILFSLYTHPYLLFKIPSNAF 326

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGI 255
           +P PKV + V+  I   +   C L  LK+I + +F +RRK L+ SLKRL     +    +
Sbjct: 327 YPIPKVEAAVMKIIFKKHIFNCNLLFLKQILKHSFQQRRKKLKSSLKRLLNMYNIQNVPL 386

Query: 256 E-TNLRAENLSIEDFCRITNILTDNQDI 282
             ++LR + L  E F  +TNIL    D 
Sbjct: 387 PFSDLRPQQLYPEQFIELTNILFPLHDY 414


>gi|297743975|emb|CBI36945.3| unnamed protein product [Vitis vinifera]
          Length = 284

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 39/242 (16%)

Query: 15  SHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
            HY   +   K  GQ+ L +  ++  I E SG      ++EIG G GNLT+ LL  G + 
Sbjct: 19  KHYQGGVTFHKSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAG-KS 77

Query: 73  VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           VI +E D +    L+      P  NRL++IQ D L+ D   F         +AN+PY I 
Sbjct: 78  VIAVEVDPRMVLELQRRFQGTPLSNRLKVIQGDVLRCDLPYF------DICVANIPYQIS 131

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + L F  ++     P +    ++FQ+E   R+ AQ     Y RLS               
Sbjct: 132 SPLTFKLLAHR---PVFRCAVIMFQREFAMRLVAQPGDNLYCRLS--------------- 173

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
                     V S+V+   P     P   +    + +  F ++ KTL    ++    +LL
Sbjct: 174 ----------VDSSVVRIEPRKPLPPVNFKEWDGLVRLCFNRKNKTLGSIFRQKSVLSLL 223

Query: 251 HQ 252
            +
Sbjct: 224 EK 225


>gi|284931020|gb|ADC30958.1| dimethyladenosine transferase [Mycoplasma gallisepticum str. F]
          Length = 268

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 130/280 (46%), Gaps = 20/280 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M NK   +     + +  P K  GQNFL+D NI+ KI E+   ++   V+EIG G G ++
Sbjct: 1   MINK---INKFFKNNEFSPSKQRGQNFLIDQNIINKIVEAVIKINPSKVLEIGPGLGAIS 57

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + L+   A     IE D++ F  L +   +      I+  DAL++D++  F+ +     +
Sbjct: 58  EQLIKRFADNYYAIELDKKLFHHLNEELLKD----HILHADALEIDWKSIFDNLGDNPTM 113

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           + NLPYNI ++L+  +I +      +    ++ QKE+G R+ A+ NS  Y   S L  + 
Sbjct: 114 VGNLPYNISSKLIKKFILST-----YRCAIIMVQKEMGLRLLAKINSKDYSAFSALCQYS 168

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
              + + +I+   F P PKV ST++             E   K+    F  RRKT+  +L
Sbjct: 169 LNVSKIIEINETAFIPQPKVRSTLLFLEKKDIAFNEGYEKFLKLI---FLSRRKTILNNL 225

Query: 242 KRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILT 277
           K      L    L   G +   RA+ LS      +   L+
Sbjct: 226 KNNYDSKLVIQSLVSLGFKKTSRAQELSPTQLFSLYESLS 265


>gi|331703024|ref|YP_004399711.1| Dimethyladenosine transferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328801579|emb|CBW53732.1| Dimethyladenosine transferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 266

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 15/270 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KKY GQNF+ DLN++ +I +         ++EIG G G LT+ L+     KV+VIE 
Sbjct: 1   MKAKKYYGQNFISDLNLINRIVDVLDQNKDQLIVEIGPGKGALTKELVKRF-DKVVVIEI 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRLLFN 136
           DQ    ILK   +   + LEIIQ D L++D ++  +      I II+N PY I + +LF 
Sbjct: 60  DQDMVEILKTKFNH--SNLEIIQADVLELDLKQLISKYNYKNISIISNTPYYITSEILFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +              + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+
Sbjct: 118 TL---QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFY 174

Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENL 249
           P PKV S +I    +          +      +  F  +RKT           +      
Sbjct: 175 PIPKVDSAIISLTFNDIYKKQVNNDKKFIDFVRLLFNNKRKTILNNLNNIIQNKNKALEY 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+   I +NLR E L I+ + ++ N++ ++
Sbjct: 235 LNTLNINSNLRPEQLDIDQYIKLFNLIYNS 264


>gi|328773161|gb|EGF83198.1| hypothetical protein BATDEDRAFT_85801 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 326

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 133/309 (43%), Gaps = 38/309 (12%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI---TVIEIGAGPGNLTQMLL 66
           L  ++S Y +  KK +GQNFLL   +   IA+ + +         +E+G GPG LT+ LL
Sbjct: 6   LPQLISIYNVHAKKALGQNFLLRPGVTDSIAQHAVAKKRDGKTLHVEVGPGPGGLTRSLL 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----------- 115
            LG   ++ +EKD    P+L+ + +  P+R   +  D L+ D +  FN            
Sbjct: 66  KLGVTHLVAVEKDASVAPMLQILQASVPSRFRFLLGDMLESDQQVLFNQIMTEAVECDRL 125

Query: 116 --------------SSPIRIIANLPYNIGTRLLFNWISADTWPPFW-----ESLTLLFQK 156
                            + I+ NLPY+I + LL  WI       +        +TL+ Q+
Sbjct: 126 SQPNSNSNPDNQPHFDKVHIVGNLPYSISSPLLHMWIKQAATEKYLFSFPKTEMTLMLQR 185

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL--NP 214
           EV ERI A   +   GRLSVL        M+  +   +F P PKV   ++ F PH     
Sbjct: 186 EVCERIAAPVGTKVRGRLSVLCQAFFDVKMLSVVDRKLFRPVPKVDGGILQFKPHAENRL 245

Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAGIETNLRAENLSIEDFCR 271
                E+   + +         +R  LKR       ++L + GI+   R+  + ++ + R
Sbjct: 246 KDVPYETFAHLVKVLHHHPNSMIRAILKRHNLGKVIDVLTECGIDPTSRSFMVDVDSYIR 305

Query: 272 ITNILTDNQ 280
           +    T ++
Sbjct: 306 LARRCTHDR 314


>gi|242556502|pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
           Methanocaldococcus Jannaschi
 gi|242556503|pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
           Methanocaldococcus Jannaschi
          Length = 265

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 125/268 (46%), Gaps = 28/268 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q FL+D N + K  ES+       V+EIG G G LT+ L    A+KV VIE D+   P  
Sbjct: 3   QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPY- 60

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
            +   +  N +EII  DALKVD  K        +++ANLPY I + + F  I        
Sbjct: 61  ANKLKELYNNIEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKLIKRG----- 111

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
           ++   L++Q E  +R+ A++ +  YGRLSV    R    ++  + P  F+P PKV S ++
Sbjct: 112 FDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIV 171

Query: 207 HFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL--------------KRLGGENLLH 251
              P+        E+      +  F  R K++R++L              K++  + L  
Sbjct: 172 KIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNT 231

Query: 252 QAGIET--NLRAENLSIEDFCRITNILT 277
            + I+   N +   LS++D   ++N   
Sbjct: 232 NSEIKNLINEKVFKLSVKDIVNLSNEFY 259


>gi|83319298|ref|YP_424004.1| dimethyladenosine transferase [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|90110032|sp|P43038|RSMA_MYCCT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|83283184|gb|ABC01116.1| dimethyladenosine transferase [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 266

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 126/268 (47%), Gaps = 15/268 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KKY GQNF+ DLN++ KI +         +IEIG G G LT+ L+     KV+VIE 
Sbjct: 1   MKAKKYYGQNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGALTKELVKRF-DKVVVIEI 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136
           DQ    ILK   +   + LEIIQ D L++D ++  +      I II+N PY I + +LF 
Sbjct: 60  DQDMVEILKTKFNH--SNLEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +              + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+
Sbjct: 118 TL---QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFY 174

Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENL 249
           P PKV S +I    +          +   +  +  F  +RKT           +      
Sbjct: 175 PIPKVDSAIISLTFNNIYKKQINDDKKFIEFVRTLFNNKRKTILNNLNNIIQNKNKALEY 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILT 277
           L    I +NLR E L I+++ ++ N++ 
Sbjct: 235 LKMLNISSNLRPEQLDIDEYIKLFNLIY 262


>gi|163783210|ref|ZP_02178204.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881544|gb|EDP75054.1| dimethyladenosine transferase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 247

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 126/259 (48%), Gaps = 16/259 (6%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             KK  GQ+ L+   +L++IA +        V+EIG G GNLT++LL    +++ V+E D
Sbjct: 3   RLKKSYGQHLLVSKGVLERIASALEIEGKDIVVEIGGGTGNLTRVLLEHPLKRLYVLELD 62

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 L  I     +RLE+I+ DA K DF         ++++ NLPYN+G+ ++ N + 
Sbjct: 63  PDMVEKLSHIE---DSRLEVIRADASKFDFCSL---GEDLKVVGNLPYNVGSLIVENVVF 116

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                       L+ QKEV  +++ +  S  +  LSV      +   +  + P  F P P
Sbjct: 117 HHRC---VSVAVLMLQKEVALKLSGK-GSASW--LSVFLNTFYETEYVMSVPPRFFVPPP 170

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           KV S VI  +    P    ++  K    + F  RRK LR+ L     E+ L +AGI    
Sbjct: 171 KVDSGVIRCVRKEAPPELDMKRYKGFLTKLFADRRKMLRKKL----PEDTLSKAGISPKA 226

Query: 260 RAENLSIEDFCRITNILTD 278
           R E LS+EDF R+ N+  +
Sbjct: 227 RVEELSVEDFLRLYNVYEE 245


>gi|225734155|pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
           Resolution
 gi|225734156|pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
           Resolution
 gi|225734157|pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
 gi|225734160|pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
           And Sah
          Length = 249

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 133/261 (50%), Gaps = 16/261 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQ+ L+   +LKKIAE     +G TV+E+G G GNLT++LL    +K+ VIE 
Sbjct: 3   VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    LK I      RLE+I +DA K     F ++   ++++ NLPYN+ + ++ N +
Sbjct: 63  DREMVENLKSIG---DERLEVINEDASKF---PFCSLGKELKVVGNLPYNVASLIIENTV 116

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P       + QKEV E++         G LSV          +  + P  F P 
Sbjct: 117 YNKDCVPL---AVFMVQKEVAEKLQ---GKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPP 170

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           PKV S VI  + +       L++ KK   + F  RRK LR+ +     E LL +AGI  +
Sbjct: 171 PKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKI----PEELLKEAGINPD 226

Query: 259 LRAENLSIEDFCRITNILTDN 279
            R E LS+EDF ++  ++ D+
Sbjct: 227 ARVEQLSLEDFFKLYRLIEDS 247


>gi|154174948|ref|YP_001407358.1| dimethyladenosine transferase [Campylobacter curvus 525.92]
 gi|171769251|sp|A7GVW6|RSMA_CAMC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|112802443|gb|EAT99787.1| dimethyladenosine transferase [Campylobacter curvus 525.92]
          Length = 285

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 72/277 (25%), Positives = 126/277 (45%), Gaps = 22/277 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK+ GQNFL D  +L KI ++    D   ++EIG G G+LT  +L +    V   E 
Sbjct: 2   IRAKKHFGQNFLQDEAVLNKIIQAI-PKDTQNIVEIGPGLGDLTFKILQIC--SVTAYEI 58

Query: 79  DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D + F +L    ++     RL++   DAL+   E   +      ++ANLPY + T+++ +
Sbjct: 59  DSELFALLGKKFAKEVQNGRLKLFCKDALEKWDEGGVSEQG-YFLVANLPYYVATKMILS 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I  +        L ++ Q+EV  + +A+     +  L++L   +    ++FD+S   F 
Sbjct: 118 AIDDEKC----RGLVVMIQREVALKFSAKSGESEFSSLAILANLQGSCELLFDVSAQCFN 173

Query: 197 PSPKVTSTVIHFIPHLNPIPCC--------LESLKKITQEAFGKRRKTLRQSLKRLGGE- 247
           P PKV S+VI        +            E  K   + AF   RKTL ++L     + 
Sbjct: 174 PPPKVVSSVIKIQKSKILLGESGIFKDKFEYEKFKIFLKIAFASPRKTLMKNLSAKFDKF 233

Query: 248 ---NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
               L  +  +   +R   L++E + +I   L ++ +
Sbjct: 234 ELNTLFAELNLSPAIRPHELNVELYLKIFENLKEDNE 270


>gi|167394422|ref|XP_001733536.1| dimethyladenosine transferase [Entamoeba dispar SAW760]
 gi|165894697|gb|EDR22603.1| dimethyladenosine transferase, putative [Entamoeba dispar SAW760]
          Length = 252

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 12/203 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQ+ L +  I ++I +++       V+EIG G GNLT  +L    +K+I IE 
Sbjct: 10  FQFHKSEGQHILKNPMIAQQIVDAAELRRTDVVLEIGPGTGNLTMKMLPFC-KKLIAIEI 68

Query: 79  DQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    LK   S   +  +LEIIQ D LKV+   F         ++N PY+I + L+F 
Sbjct: 69  DPRMAAELKKRVSVTDYVKKLEIIQGDFLKVELPYF------DVCVSNTPYSISSPLVFK 122

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++     P + S  L+FQ+E   R+ A+   P Y RLSV T        +  +  + F 
Sbjct: 123 LLNHR---PQFRSAVLMFQREFAMRLVAKPGDPLYCRLSVNTQLLADVFHVMKVGRNNFK 179

Query: 197 PSPKVTSTVIHFIPHLNPIPCCL 219
           P PKV S+V+  IP     P  L
Sbjct: 180 PPPKVESSVVRMIPVKPAPPLNL 202


>gi|15606866|ref|NP_214246.1| dimethyladenosine transferase [Aquifex aeolicus VF5]
 gi|27151558|sp|O67680|RSMA_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|2984099|gb|AAC07637.1| dimethyladenosine transferase [Aquifex aeolicus VF5]
          Length = 248

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 133/261 (50%), Gaps = 16/261 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQ+ L+   +LKKIAE     +G TV+E+G G GNLT++LL    +K+ VIE 
Sbjct: 2   VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    LK I      RLE+I +DA K     F ++   ++++ NLPYN+ + ++ N +
Sbjct: 62  DREMVENLKSIG---DERLEVINEDASKF---PFCSLGKELKVVGNLPYNVASLIIENTV 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P       + QKEV E++         G LSV          +  + P  F P 
Sbjct: 116 YNKDCVPL---AVFMVQKEVAEKLQ---GKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPP 169

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           PKV S VI  + +       L++ KK   + F  RRK LR+ +     E LL +AGI  +
Sbjct: 170 PKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKI----PEELLKEAGINPD 225

Query: 259 LRAENLSIEDFCRITNILTDN 279
            R E LS+EDF ++  ++ D+
Sbjct: 226 ARVEQLSLEDFFKLYRLIEDS 246


>gi|300870168|ref|YP_003785039.1| putative dimethyladenosine transferase [Brachyspira pilosicoli
           95/1000]
 gi|300687867|gb|ADK30538.1| putative dimethyladenosine transferase [Brachyspira pilosicoli
           95/1000]
          Length = 283

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 18/283 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQ 63
               +   L    I P K  GQNFL D NI   IA +     L G   IEIG G G+L+ 
Sbjct: 7   SKSEITEYLKSKSIFPNKNRGQNFLCDRNIAYNIANTVPKDILRGDYAIEIGGGLGSLSN 66

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           +L+ +    + ++E D   +  LK+        + II +D LKV+     + +    +  
Sbjct: 67  VLVDIYKNNLTIVEYDNALYNHLKETYKD----INIIHNDILKVNINDI-DKNKNFDVYG 121

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+PYNI + ++            W     + Q +   R+ A++ S  Y  L++   + + 
Sbjct: 122 NIPYNIASPIIEWLF--CDCYNRWNYAVFMVQSDFANRLIAKEGSEDYSALTLFASFMSD 179

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             + +++S  VF+P PKVTS++I   P    +   L   K +++  F  RRKT++ +  +
Sbjct: 180 IKLEYNVSKEVFYPIPKVTSSIISIKPKEVDLSM-LNIFKSVSKTLFHNRRKTIKNNFLK 238

Query: 244 L--------GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                      + +L +A I+  +R E+LSIE    ++ I+ D
Sbjct: 239 SPYIDIDKDKIDEILEKANIDKEIRGESLSIEKVKELSLIIKD 281


>gi|115472299|ref|NP_001059748.1| Os07g0509600 [Oryza sativa Japonica Group]
 gi|113611284|dbj|BAF21662.1| Os07g0509600 [Oryza sativa Japonica Group]
          Length = 347

 Score =  198 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +    K  GQ+ L +  +L  I   +    G  V+E+G G GNLT  LL   A +V  +E
Sbjct: 23  RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVE 82

Query: 78  KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    +          ++L +I+ DA++ +F +F         +AN+PY I + L+ 
Sbjct: 83  IDPRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF------DVCVANIPYGISSPLIA 136

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +     P  + + TLL QKE   R+ A      Y RL+        A ++ D+S   F
Sbjct: 137 KLLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDF 193

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            P PKV S+++   P        L      T+  FG++ KTL    K+
Sbjct: 194 VPMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTLGAIFKQ 241


>gi|154149286|ref|YP_001407258.1| dimethyladenosine transferase [Campylobacter hominis ATCC BAA-381]
 gi|171769706|sp|A7I417|RSMA_CAMHC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|153805295|gb|ABS52302.1| dimethyladenosine transferase [Campylobacter hominis ATCC BAA-381]
          Length = 269

 Score =  198 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 117/268 (43%), Gaps = 20/268 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK  GQNFL D N L KI ES    +   ++EIGAG G+LT  LL     KV   E D+
Sbjct: 4   AKKKFGQNFLKDKNALNKIIESI-PENAENIVEIGAGLGDLTYELLRK--FKVKSYEIDK 60

Query: 81  QFFPILKDISS-QHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
                LK   + +  NR  E++  DALK       N      ++ANLPY + T ++   I
Sbjct: 61  DLIEFLKSKFACELENRKFELVFGDALKFWKNGLCN--KNYFLVANLPYYVATNMILKAI 118

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             +      +    + QKEV E+  A+     +G +SVL     K   +F +    F P+
Sbjct: 119 DDE----LCDGFVAMVQKEVAEKFCAESGDSEFGGISVLADIFGKCEFLFSVPADSFEPA 174

Query: 199 PKVTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL--- 250
           PKV S VI                  E+ K   +  F   RKT+ ++L     + +L   
Sbjct: 175 PKVVSAVIRLKKTRKIDDIFENSVQYENFKNFLKICFSSPRKTIMKNLSTKFDKEILQSI 234

Query: 251 -HQAGIETNLRAENLSIEDFCRITNILT 277
             +  + TNLRA  L+   F +I   L 
Sbjct: 235 FEKLDLTTNLRAHELNFTLFFKIFKNLR 262


>gi|305432594|ref|ZP_07401755.1| dimethyladenosine transferase [Campylobacter coli JV20]
 gi|304444305|gb|EFM36957.1| dimethyladenosine transferase [Campylobacter coli JV20]
          Length = 264

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 118/265 (44%), Gaps = 16/265 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK+ GQNFL D +IL KI ++    D   ++EIG G G+LTQ LL +    V   E 
Sbjct: 2   MKAKKHYGQNFLNDKSILSKIIQAI-PKDTENIVEIGPGLGDLTQELLKVS--HVKAYEI 58

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D    PIL+    +     +L ++  DA K+             ++ANLPY + + L+  
Sbjct: 59  DDDLIPILRKKFQKELDCGKLNLLHQDASKLACFD----EKKYFLVANLPYYVASHLILQ 114

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ QKE+  +  A      +  L VL+    +  ++FD+ P  F 
Sbjct: 115 ALEDKNCS----GLIVMVQKEMALKFCAHSGESDFSALGVLSAMICEREILFDVEPECFN 170

Query: 197 PSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV S V+  I        C + + K   ++ F   RK L  +LK    +   L  + 
Sbjct: 171 PPPKVVSAVMKMIKFRAYQDLCEIHAFKAFLKDCFKAPRKQLLGNLKIHKAKLTELFQEL 230

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
            +  NLR   L ++ + +I   + +
Sbjct: 231 KLNLNLRPHELCVDSYLKIYEKVKE 255


>gi|57504575|ref|ZP_00370687.1| dimethyladenosine transferase [Campylobacter coli RM2228]
 gi|57019470|gb|EAL56164.1| dimethyladenosine transferase [Campylobacter coli RM2228]
          Length = 263

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 118/265 (44%), Gaps = 16/265 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK+ GQNFL D +IL KI ++    D   ++EIG G G+LTQ LL +    V   E 
Sbjct: 1   MKAKKHYGQNFLNDKSILSKIIQAI-PKDTENIVEIGPGLGDLTQELLKVS--HVKAYEI 57

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D    PIL+    +     +L ++  DA K+             ++ANLPY + + L+  
Sbjct: 58  DDDLIPILRKKFQKELDCGKLNLLHQDASKLACFD----EKKYFLVANLPYYVASHLILQ 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ QKE+  +  A      +  L VL+    +  ++FD+ P  F 
Sbjct: 114 ALEDKNCS----GLIVMVQKEMALKFCAHSGESDFSALGVLSAMICEREILFDVEPECFN 169

Query: 197 PSPKVTSTVIHFIP-HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV S V+  I        C + + K   ++ F   RK L  +LK    +   L  + 
Sbjct: 170 PPPKVVSAVMKMIKFRAYQDLCEIHAFKAFLKDCFKAPRKQLLGNLKIHKAKLTELFQEL 229

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
            +  NLR   L ++ + +I   + +
Sbjct: 230 KLNLNLRPHELCVDSYLKIYEKVKE 254


>gi|242556505|pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
           Methanocaldococcus Jannaschi
          Length = 263

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 123/268 (45%), Gaps = 28/268 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q FL+D N + K  ES+       V+EIG G G LT+ L    A+KV VIE D+   P  
Sbjct: 1   QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPY- 58

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
            +   +  N +EII  DALKVD  K        +++ANLPY I + + F  I        
Sbjct: 59  ANKLKELYNNIEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKLIKRG----- 109

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
           ++   L++Q E  +R+ A   +  YGRLSV    R    ++  + P  F+P PKV S ++
Sbjct: 110 FDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIV 169

Query: 207 HFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSL--------------KRLGGENLLH 251
              P+        E+      +  F  R K++R++L              K++  + L  
Sbjct: 170 KIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNT 229

Query: 252 QAGIET--NLRAENLSIEDFCRITNILT 277
            + I+   N +   LS++D   ++N   
Sbjct: 230 NSEIKNLINEKVFKLSVKDIVNLSNEFY 257


>gi|299137112|ref|ZP_07030295.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX8]
 gi|298601627|gb|EFI57782.1| dimethyladenosine transferase [Acidobacterium sp. MP5ACTX8]
          Length = 295

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 117/289 (40%), Gaps = 34/289 (11%)

Query: 22  KK-YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           KK  +GQNFL+D +   +I+ES G     TV+EIG G G +T +L    A  +  IE D 
Sbjct: 3   KKPKLGQNFLVDESACLRISESLGDTRARTVVEIGPGHGAITDLLAPRCAL-LHCIEFDP 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKF------------------------FNIS 116
                L       P+ + I   D L+ D  +                          + +
Sbjct: 62  ALARELAFRFRNDPH-VTIHNADILQTDLSQLESQNSNLEAESSSLNPSSLLAEPTPSPA 120

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           + + +I NLPY I + +L +   A           L+ Q+EV ERI +   S  YG LS 
Sbjct: 121 ATLDVIGNLPYYITSDILLHLFVAARKG-ILARAVLMMQREVAERIASAPGSSDYGALSA 179

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRR 234
            T      T +F + P  F P P V STV+   F P    +    E      +  F ++R
Sbjct: 180 FTQLHAHVTNLFTLPPEAFSPPPDVYSTVLRLDFAPRFTELGVEPEGFNSFLRSTFAQKR 239

Query: 235 KTLRQSLKRLG-GENLLHQA---GIETNLRAENLSIEDFCRITNILTDN 279
           KTL  +L+  G     L       I    R+E + +E    +   L+ N
Sbjct: 240 KTLANNLRVAGYSSAQLTSVWPTSIPAQARSEAVPLEAMAELYRALSTN 288


>gi|125600382|gb|EAZ39958.1| hypothetical protein OsJ_24395 [Oryza sativa Japonica Group]
          Length = 358

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +    K  GQ+ L +  +L  I   +    G  V+E+G G GNLT  LL   A +V  +E
Sbjct: 34  RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVE 93

Query: 78  KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    +          ++L +I+ DA++ +F +F         +AN+PY I + L+ 
Sbjct: 94  IDPRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF------DVCVANIPYGISSPLIA 147

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +     P  + + TLL QKE   R+ A      Y RL+        A ++ D+S   F
Sbjct: 148 KLLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDF 204

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            P PKV S+++   P        L      T+  FG++ KTL    K+
Sbjct: 205 VPMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTLGAIFKQ 252


>gi|319955820|ref|YP_004167083.1| dimethyladenosine transferase [Nitratifractor salsuginis DSM 16511]
 gi|319418224|gb|ADV45334.1| dimethyladenosine transferase [Nitratifractor salsuginis DSM 16511]
          Length = 286

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 121/267 (45%), Gaps = 17/267 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
             K  GQNFL D +++++I +S    D + V+EIG G G+LT+ L+ +  R V   E D+
Sbjct: 12  ADKRFGQNFLEDRSVVEQIIQSM-PDDDLPVVEIGPGLGDLTKELVRV--RPVTAFEVDK 68

Query: 81  QFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           +    L    S+     RL +   D L+        I  P R++ANLPY I T ++   +
Sbjct: 69  RLCDYLGKNFSREIADGRLRLECGDVLERWKNGSL-IDRPYRLVANLPYYIATNIILKAL 127

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P   S   + QKEV E+  A++   ++  LSVL G   +A +   + P  F P 
Sbjct: 128 RD----PHCRSTLTMVQKEVAEKFAAREGDRNFSALSVLAGSVGEARIRLLVPPSAFNPP 183

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAG 254
           PKV S V+      N      E+     + AF + RKTL ++L     ++LL        
Sbjct: 184 PKVESAVLEIRKEHNLTDGGFEAF---LKAAFRQPRKTLMKNLSAAYPKSLLEPLFEALK 240

Query: 255 IETNLRAENLSIEDFCRITNILTDNQD 281
           +   LR   +    + R+   LT   D
Sbjct: 241 LGKTLRPHQVGTTLYHRLYQALTKEPD 267


>gi|125558476|gb|EAZ04012.1| hypothetical protein OsI_26151 [Oryza sativa Indica Group]
          Length = 358

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +    K  GQ+ L +  +L  I   +    G  V+E+G G GNLT  LL   A +V  +E
Sbjct: 34  RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVE 93

Query: 78  KDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    +          ++L +I+ DA++ +F +F         +AN+PY I + L+ 
Sbjct: 94  IDPRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF------DVCVANIPYGISSPLIA 147

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +     P  + + TLL QKE   R+ A      Y RL+        A ++ D+S   F
Sbjct: 148 KLLFG---PYRFRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDF 204

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            P PKV S+++   P        L      T+  FG++ KTL    K+
Sbjct: 205 VPMPKVDSSLVEIRPRAAEPNVDLAEWLAFTRSCFGQKNKTLGAIFKQ 252


>gi|300681352|emb|CAZ96099.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570]
          Length = 333

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 138/285 (48%), Gaps = 28/285 (9%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            +++++ S  + +P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL 
Sbjct: 60  STIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQ 119

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---------SSP 118
            GA  V  +EKD+    ++KD       +L++I++D  K      F              
Sbjct: 120 AGA-TVFAVEKDKHMAALVKDRFGST-EQLKVIEEDITKFHIRSHFLPFMKEKCHATKKL 177

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVL 177
            ++++NLP+N+ T ++   +        +  + L+ Q E   R+  A   SP Y  ++V 
Sbjct: 178 AKVVSNLPFNVSTEVVRLLL---PMGDVFSVVVLMLQDETAVRLADASIQSPEYRLINVF 234

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKT 236
             + ++    F ++   FFP PKV   VI F + +    P            AF  +RK 
Sbjct: 235 VNFYSEPEYKFRVNRENFFPQPKVDGAVISFKLKNAEEYPP--------VNSAFMGKRKM 286

Query: 237 LRQSLKRLGGENLLHQA----GIETNLRAENLSIEDFCRITNILT 277
           LR+SL+ L   + +  A    G+    R  +L ++DF R+ N LT
Sbjct: 287 LRKSLQHLCSSSEIESALGNIGLPVTARPSDLILDDFVRLHNHLT 331


>gi|223038498|ref|ZP_03608792.1| dimethyladenosine transferase [Campylobacter rectus RM3267]
 gi|222880355|gb|EEF15442.1| dimethyladenosine transferase [Campylobacter rectus RM3267]
          Length = 287

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 127/277 (45%), Gaps = 22/277 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D   L KI ++    D   ++EIGAG G+LT  +L +    V   E 
Sbjct: 4   IKAKKRFGQNFLQDEATLNKIIQAI-PKDTQNIVEIGAGLGDLTFRILRICG--VTSYEI 60

Query: 79  DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D + F +L+   +      RL++   DAL V +++      P  + ANLPY + T+++ +
Sbjct: 61  DTELFALLQKKFANEIQNGRLKLFCKDAL-VQWDESGLSDEPYFLAANLPYYVATKMILS 119

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +  +        + ++ QKEV  + +A+     +  L++L   +    ++FD+    F 
Sbjct: 120 AVEDERC----RGMVVMIQKEVALKFSAKSGDRDFSSLAILASLQGSCELLFDVDASCFN 175

Query: 197 PSPKVTSTVIHFIPHLNPIPC--------CLESLKKITQEAFGKRRKTLRQSLKRLG--- 245
           P PKVTS+VI      N I            E  K   + AF   RKTL ++L +     
Sbjct: 176 PPPKVTSSVIKLQKSKNLIGETGVFKSEFEYEKFKIYLKIAFNAPRKTLMRNLSQGFEKP 235

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             E +     +  N+R   L+++ +  I   L ++ +
Sbjct: 236 KIERIFSLLNLSANIRPHELNVDLYLEIFKNLKEDNE 272


>gi|42560564|ref|NP_975015.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|62900540|sp|Q6MUM4|RSMA_MYCMS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|42492060|emb|CAE76657.1| Dimethyladenosine transferase KsgA [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320542|gb|ADK69185.1| dimethyladenosine transferase [Mycoplasma mycoides subsp. mycoides
           SC str. Gladysdale]
          Length = 266

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 15/270 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KKY GQNF+ DLN++ +I +         +IEIG G G LT+ L+     KV+VIE 
Sbjct: 1   MKAKKYYGQNFISDLNLINRIVDVLDQNKNQLIIEIGPGKGALTKELVKRF-DKVVVIEI 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136
           DQ    ILK       + LEIIQ D L++D ++  +      I II+N PY I + +LF 
Sbjct: 60  DQDMVEILKAKFDH--SNLEIIQADVLEIDLKQLISKYDYEKISIISNTPYYITSEILFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +              + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+
Sbjct: 118 TL---QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFY 174

Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENL 249
           P PKV S +I    +          +   +  +  F  +RKT           +      
Sbjct: 175 PIPKVDSAIISLTFNDIYKKQINDDKKFIEFVRILFNNKRKTILNNLNNIIQNKNKALEY 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L+   I +NLR E L I+++ ++ N++  +
Sbjct: 235 LNTLNISSNLRPEQLDIDEYIKLFNLVYTS 264


>gi|68066927|ref|XP_675435.1| dimethyladenosine transferase [Plasmodium berghei strain ANKA]
 gi|56494621|emb|CAH94666.1| dimethyladenosine transferase, putative [Plasmodium berghei]
          Length = 362

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/331 (25%), Positives = 147/331 (44%), Gaps = 61/331 (18%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGS------------------- 45
           +   +LKT+L   +  PK+ +GQN+L D NI+KK+ ++                      
Sbjct: 22  DDEQNLKTLLPSREFKPKRSLGQNYLKDENIIKKMIQAIELDSSQFVLMKEKKKKKNLLK 81

Query: 46  --------------------------------LDGITVIEIGAGPGNLTQMLLTLGARKV 73
                                            +G  +IE+G G G L++ L     + +
Sbjct: 82  SKKDKIQDETDEKNKLKINENNCNSKNMESLKNEGKGIIELGCGLGQLSKHLFK-KYKNM 140

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTR 132
             IE D +   I+           + I DD L++++++   N ++ + +I NLP+ I ++
Sbjct: 141 TAIEIDSRALTIISRTMPG----FDFIHDDVLQINYKELSINKNTKLSVIGNLPFYITSQ 196

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           +LF  +    +  + E   +  Q EVG+RI A++N   Y  LS+L    T   ++F I  
Sbjct: 197 ILFCLLD---FYKYIEQAVVTIQYEVGQRIVAKQNDKDYSILSILFSLYTHPYLLFKIPS 253

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           + F+P PKV + V+  I   +   C L  LK++ + AF +RRK L+ SLK L     +  
Sbjct: 254 NAFYPIPKVEAAVMKIIFKKHNFNCNLLFLKQVLKHAFQQRRKKLKSSLKGLLNMYNIQN 313

Query: 253 AGIE-TNLRAENLSIEDFCRITNILTDNQDI 282
             +  ++LR + L  E F  +TNIL    D 
Sbjct: 314 LPMAFSDLRPQQLYPEQFVELTNILFPLHDY 344


>gi|269114782|ref|YP_003302545.1| Dimethyladenosine transferase [Mycoplasma hominis]
 gi|268322407|emb|CAX37142.1| Dimethyladenosine transferase [Mycoplasma hominis ATCC 23114]
          Length = 257

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 16/266 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I   K +GQNFL + NI K+I +++  + G  +IEIG G G +T  +  +   +++ IE 
Sbjct: 2   IKALKSLGQNFLSNKNIQKEIVKAANVV-GKNIIEIGPGMGAITDQMADV-VNRLVCIEF 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++ +  L  +   + + +EI+  D L+ D  K+ +      +I N+PYNI + ++F  +
Sbjct: 60  DKRLYEFL--LQKNYSSNVEILNQDFLQTDLLKYTD----FEVIGNIPYNITSDIIFKLL 113

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                      +TL+ QKEV +RI     +  Y +L+       +   +F +    F P+
Sbjct: 114 DNAKN---INKITLMVQKEVADRICCGAGNSQYSKLAASIQLLYEPKYLFTVKAKEFNPA 170

Query: 199 PKVTSTVIH--FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL---LHQA 253
           PKV S VI    I + + I      + K  ++ F  +RKTL  +      + +   L   
Sbjct: 171 PKVDSAVIQLNLIKNNDFIWNNQVEILKFIKQMFQYKRKTLLNNFPSNLKQKISDFLKSN 230

Query: 254 GIETNLRAENLSIEDFCRITNILTDN 279
            ++ N+RAE ++ E    +   + + 
Sbjct: 231 ELDLNIRAEKITKEISINLFKFINNK 256


>gi|255323625|ref|ZP_05364755.1| dimethyladenosine transferase [Campylobacter showae RM3277]
 gi|255299339|gb|EET78626.1| dimethyladenosine transferase [Campylobacter showae RM3277]
          Length = 287

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 123/278 (44%), Gaps = 22/278 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I  KK  GQNFL D   L KI ++    D   ++EIG G G+LT  +L +    V   E
Sbjct: 3   NIKAKKCFGQNFLHDEATLNKIIQAI-PKDTQNIVEIGPGLGDLTFRILRICG--VTSYE 59

Query: 78  KDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D + F +L+   +      RL++   DAL    E   +   P  + ANLPY + T+++ 
Sbjct: 60  IDTELFALLQKKFANEIQNGRLKLFCKDALDQWSEDGLS-YEPYFLAANLPYYVATKMIL 118

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           N I  +        L ++ QKEV  + +A+     +  L++L   +    ++FD++   F
Sbjct: 119 NAIEDEKC----RGLVVMIQKEVALKFSAKSGDRDFSSLAILASLQGGCELLFDVAASCF 174

Query: 196 FPSPKVTSTVIHFIPHLNPIPC--------CLESLKKITQEAFGKRRKTLRQSLKRLG-- 245
            P PKVTS+VI      N I            E  K   +  F   RKTL ++L      
Sbjct: 175 NPPPKVTSSVIKLQKSKNLIGETGVFKSKFEYEKFKTYLKIVFSAPRKTLMKNLSSSYER 234

Query: 246 --GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
              E +     +  ++R   L+++ +  +   L ++ +
Sbjct: 235 PEIERIFSMLNLSAHIRPHELNVDLYLEVFKNLKEDNE 272


>gi|256084910|ref|XP_002578668.1| dimethyladenosine transferase [Schistosoma mansoni]
 gi|238664049|emb|CAZ34906.1| dimethyladenosine transferase, putative [Schistosoma mansoni]
          Length = 295

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 46/269 (17%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              SL+ I+  Y I  +K + QNFLL  + +  + + +G+L G  V+E+G GPG +T+ +
Sbjct: 22  PLPSLREIIHVYGIRAQKQLSQNFLLQPSSINGLVKCAGNLRGAYVLEVGPGPGGITRAI 81

Query: 66  LTLGARKVIVIEKDQQFFPILKDI---SSQHPNRLEIIQDDALKVDFEKFFNI------- 115
           L    R V V+E D++F P L+++   + +   +++I + D LK + E  F I       
Sbjct: 82  LQKAPRHVAVVELDRRFIPGLQELRLAALEMGTQMDIYRQDILKFNCEGIFPISSMTGAG 141

Query: 116 ------------------------------SSPIRIIANLPYNIGTRLLFNWIS-----A 140
                                         S  + +I NLP+NI T L+  W+       
Sbjct: 142 AWDESPEVVNSNLVKSTSENQNETALEKVSSPRLCVIGNLPFNISTPLISQWLHDIAERR 201

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             W      LTL FQKEV ER+ A        RLSV++        M DI    F P PK
Sbjct: 202 GIWRYGRVPLTLTFQKEVAERLAADVWDEQRSRLSVMSQAYCDVKYMKDIPGTAFVPPPK 261

Query: 201 VTSTVIHFIPHLNP-IPCCLESLKKITQE 228
           V   V+  IP   P IP     ++K+T+ 
Sbjct: 262 VDVGVVRLIPLKQPLIPVPYPYVEKLTKA 290


>gi|289580774|ref|YP_003479240.1| dimethyladenosine transferase [Natrialba magadii ATCC 43099]
 gi|289530327|gb|ADD04678.1| dimethyladenosine transferase [Natrialba magadii ATCC 43099]
          Length = 281

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 23/249 (9%)

Query: 13  ILSHYKII--PKKYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTL 68
           +++   +   P +   Q+FL+D  +L ++      +D  T  V+EIG G G LT  LL  
Sbjct: 7   LIARAGVRGDPNRD--QHFLVDDRVLDRLPTYLTDIDADTSHVLEIGGGTGVLTDRLLET 64

Query: 69  --GARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
                ++ V+E+D      L++  S      RL +I+ DAL+VD  +F +       ++N
Sbjct: 65  IGADDQLTVVERDPPLAEFLQEEFSDAIDAGRLTVIEGDALEVDLPEFTSS------VSN 118

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY + + + F  +      P    L L+FQ+E  ER+ A+ N+  YGRLSV T     A
Sbjct: 119 LPYGVSSEITFRLL------PEQRPLVLMFQQEFAERMVAEPNTSEYGRLSVSTQHYADA 172

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKR 243
            ++  I    F P P V S V+  +P         E+   +  +  F +RRKT+R  ++ 
Sbjct: 173 ELVESIPKEAFSPPPAVQSAVVRLVPREPEYDVENEAFFLRFVKALFTQRRKTIRNGIRN 232

Query: 244 LGGENLLHQ 252
               + L +
Sbjct: 233 TAHISGLQK 241


>gi|288559416|ref|YP_003422902.1| dimethyladenosine transferase KsgA [Methanobrevibacter ruminantium
           M1]
 gi|288542126|gb|ADC46010.1| dimethyladenosine transferase KsgA [Methanobrevibacter ruminantium
           M1]
          Length = 298

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 79/247 (31%), Positives = 119/247 (48%), Gaps = 24/247 (9%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           +   K IL    I   K +GQN+L+D    KKI   +      TV+EIG G G LT  L 
Sbjct: 8   AKQTKRILQENDIKLNKNLGQNYLIDDFKRKKIINYANLTKEDTVLEIGPGIGTLTIELA 67

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
              A+KVI IE+D+  F ILK    +   N +E+I  DA+KVDF +F       +I++NL
Sbjct: 68  KR-AKKVIAIEQDETIFNILKKRLEKEKINNVELINGDAVKVDFPEF------NKIVSNL 120

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY I + + F +++ D     ++   L++QKE  +R+  +  +  Y RLS +  ++    
Sbjct: 121 PYQISSPISFKFLNHD-----FDLAILMYQKEFADRMNGKVGTKQYSRLSAMLYFKADVK 175

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHL-----------NPIPCCLESLKKITQEAFGKRR 234
            +  +SP  F PSPKV S VI   P                    ++  K+ +  F  R 
Sbjct: 176 FLTKVSPESFIPSPKVDSAVIQLKPKNIDSIRINDKEYEIDKETYKTYSKVVKALFQHRN 235

Query: 235 KTLRQSL 241
           K  R +L
Sbjct: 236 KKARNAL 242


>gi|189218276|ref|YP_001938918.1| Dimethyladenosine transferase (rRNA methylation) [Methylacidiphilum
           infernorum V4]
 gi|189185134|gb|ACD82319.1| Dimethyladenosine transferase (rRNA methylation) [Methylacidiphilum
           infernorum V4]
          Length = 271

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/277 (27%), Positives = 121/277 (43%), Gaps = 25/277 (9%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLL 66
            +K++LS   + P K +GQNFL+D N+ K I   +  G      + EIG G G+LT+  L
Sbjct: 5   EIKSLLSSNHLSPSKKLGQNFLIDQNLAKFIVRETLEGVPLPQEIYEIGPGLGSLTEFFL 64

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
                 +  IE D+ F  +L +  S +P R E+IQ +AL   F +  +      ++ NLP
Sbjct: 65  QQNV-FLKAIEIDRGFCKVLLERFSANP-RFELIQANALDFSFPQSTHGK---ILVGNLP 119

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I + LL          P    +    Q+EV  R+ A+  +  +G LSVL  +  +   
Sbjct: 120 YTISSPLLAKLALLAVPFP---RMIFTLQQEVASRLMAKTRTKDFGALSVLMQYFFEIKK 176

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKR 243
           M  +   VF+P PK+ S V+ F P                   +  F +RRK L + L  
Sbjct: 177 MRKVPKEVFYPVPKIESAVVFFEPKNTAFRMDAPEKYSFYAFVRRCFSQRRKKLGKILH- 235

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                      I  + R + +  E +  +   L D++
Sbjct: 236 -----------IPLDHRPDEIPPECWANLWMELKDSR 261


>gi|152993938|ref|YP_001359659.1| dimethyladenosine transferase [Sulfurovum sp. NBC37-1]
 gi|151425799|dbj|BAF73302.1| dimethyladenosine transferase [Sulfurovum sp. NBC37-1]
          Length = 284

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 17/275 (6%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           I+ +      K  GQNFL     L++I ++    DG+ V EIG G G+LT+ L  + AR 
Sbjct: 2   IIENLAEFASKKFGQNFLKSDYYLQQIIQAM-PNDGLRVAEIGPGLGDLTKEL--VKARN 58

Query: 73  VIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           V   E D++    L     +  H    E+   D L+        +  P  ++ANLPY I 
Sbjct: 59  VTAFEVDKRLCEHLTSEFEEPIHNGSFELRCGDVLERWASGSL-LDEPYHLVANLPYYIA 117

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T ++   +  +       S+ ++ QKEV  +  A+     +  LSVL     KAT+ F++
Sbjct: 118 TNIILKALKDEHC----RSVLVMVQKEVAVKFAAEAGEKAFSALSVLASTVGKATLCFEV 173

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL- 249
               F P P VTS V+    + +      E  +   + AF + RK L ++L     ++L 
Sbjct: 174 EREAFVPPPNVTSAVLLIEKNRS---FDDEKFEAFLKIAFSQPRKKLSKNLMTAFPKDLV 230

Query: 250 ---LHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
                +  + + +R        +  + N L DN D
Sbjct: 231 KKTFAELELPSTMRPHEAGTSIYHHLYNELKDNLD 265


>gi|42522227|ref|NP_967607.1| dimethyladenosine transferase [Bdellovibrio bacteriovorus HD100]
 gi|62900539|sp|Q6MQ47|RSMA_BDEBA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|39574758|emb|CAE78600.1| dimethyladenosine transferase [Bdellovibrio bacteriovorus HD100]
          Length = 274

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 126/283 (44%), Gaps = 21/283 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M+     L+       I  KK +GQNFL+   ++ +I +   +     ++E+G GPG L 
Sbjct: 1   MSYSRERLQRAQEAMGIAAKKSLGQNFLVSDTVINRIIDQVKAFAPEELVEVGPGPGAL- 59

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             LL      + +IE D       ++        L +I+ DAL++D+++F+     +  +
Sbjct: 60  TDLLLELNLPLQLIELDSAIAAYWREKG------LTVIEQDALRLDWKQFYT-GKRVVFV 112

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           +NLPY I + ++   I          ++ L+FQKEV ++I    +S  YG LSV      
Sbjct: 113 SNLPYQISSSIV---IERSLENEGVAAMVLMFQKEVAQKIRGTVDSDLYGLLSVYAQAFW 169

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           K   + D  P  F P PKV S V+ F   +       ++     + AF +RRK L+++L 
Sbjct: 170 KIETVTDAGPRDFQPPPKVASRVLSFE-RIESEVKNRKAFLTFVKCAFAQRRKLLKKNLS 228

Query: 243 RLGGEN---------LLHQAGIETNLRAENLSIEDFCRITNIL 276
            L  +           L + G +   RAE LS + F  +    
Sbjct: 229 GLLSQKKLTEEQMVGWLAELGFKETARAEELSPKQFVALYKHF 271


>gi|33861490|ref|NP_893051.1| dimethyladenosine transferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|62900569|sp|Q7V1E1|RSMA_PROMP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|33634067|emb|CAE19392.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 277

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 123/267 (46%), Gaps = 12/267 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL     ++  IE
Sbjct: 5   NHHQKKRFGQHWLVNNLILEKIKEVAELEEKDFILEIGPGRGALTSKLLDSKISRLHAIE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+    +L +   ++     + Q D L  + +         ++IAN+PYNI   +L  +
Sbjct: 65  LDEDLIDLLNNKF-RNDKNFSLQQGDILSTNLDSI--NKKITKVIANIPYNITGPILDIF 121

Query: 138 ISADTWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           +          +  +  L QK+V +RI A+  + + G +SV     +    + D+ P  F
Sbjct: 122 VGRLGIISKNNYNKIIFLMQKDVVDRILAKDGNTNAGAMSVRMQLISNIRRICDVPPSSF 181

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV ST++ F P    +   ++    L K+ + +F  RRK +R +L  +     + +
Sbjct: 182 DPPPKVFSTLVVFEPLRPEMRLDIKLEKYLDKLLRISFNSRRKMIRNTLNSILSAEEIEK 241

Query: 253 AG----IETNLRAENLSIEDFCRITNI 275
                 I  N R +++SI  + ++   
Sbjct: 242 LSESSQICFNSRPQDISINKWIKLAEA 268


>gi|313664894|ref|YP_004046765.1| dimethyladenosine transferase [Mycoplasma leachii PG50]
 gi|312949380|gb|ADR23976.1| dimethyladenosine transferase [Mycoplasma leachii PG50]
          Length = 266

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 127/270 (47%), Gaps = 15/270 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KKY GQNF+ DLN++ +I +         +IEIG G G LT+ L+     KV+VIE 
Sbjct: 1   MKAKKYYGQNFISDLNLINRIVDVLDQNKNQLIIEIGPGKGALTKELVKRF-NKVVVIEI 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFN 136
           DQ    ILK       + LEIIQ D LK+D ++  +      I II+N PY I + +LF 
Sbjct: 60  DQDMVEILKAKFD--YSNLEIIQTDVLKIDLKQLISKYDYEKISIISNTPYYITSEILFK 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +              + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+
Sbjct: 118 TL---QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNRKMFY 174

Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENL 249
           P PKV S +I    +          +   +  +  F  +RKT           +      
Sbjct: 175 PIPKVDSAIISLTFNDIYKKQINDDKKFIEFVRILFNNKRKTILNNLNNIIQNKNKALEY 234

Query: 250 LHQAGIETNLRAENLSIEDFCRITNILTDN 279
           L  + I +NLR E L I+++ ++ N++  +
Sbjct: 235 LKISNISSNLRPEQLDIDEYIKLFNLIYTS 264


>gi|296271693|ref|YP_003654324.1| dimethyladenosine transferase [Arcobacter nitrofigilis DSM 7299]
 gi|296095868|gb|ADG91818.1| dimethyladenosine transferase [Arcobacter nitrofigilis DSM 7299]
          Length = 270

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 123/263 (46%), Gaps = 16/263 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           KI  KK  GQNFL D  +L  I +S    +   ++EIG G G+LT+ L  +  + V   E
Sbjct: 3   KIKAKKKYGQNFLKDDTVLSMIIQSM-PNNNNHIVEIGPGLGDLTKNL--VKCKDVTAYE 59

Query: 78  KDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D   F ILK   +       L +I  D L+   ++    +S   +IANLPY I T ++ 
Sbjct: 60  VDTDLFAILKTKFAIPIDSGSLTLIHADVLESWTKQKSLHNSKYDLIANLPYYIATNIIL 119

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT-KATMMFDISPHV 194
                +      E + ++ QKEV E+ +A +    +  L V++   + ++ ++FD+ P  
Sbjct: 120 RAFEDEAC----EHIIVMVQKEVAEKFSANEGDKEFSALGVISKLCSIESKILFDVPPES 175

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LL 250
           F P PKVTS++++     +      ++     +  F + RK L +++  +  +     L 
Sbjct: 176 FDPPPKVTSSILYI--KKDMSKTMDKNFNSFLKACFQQPRKKLSKNVSSIVPKETISSLF 233

Query: 251 HQAGIETNLRAENLSIEDFCRIT 273
            +  I  N+R   LS   + +I 
Sbjct: 234 EELEISDNIRPHELSASLYSQIY 256


>gi|222480514|ref|YP_002566751.1| dimethyladenosine transferase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453416|gb|ACM57681.1| dimethyladenosine transferase [Halorubrum lacusprofundi ATCC 49239]
          Length = 303

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 115/291 (39%), Gaps = 35/291 (12%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTL-- 68
            +             Q+FL+D  +L +I        D   ++EIG G G LT  LL    
Sbjct: 19  ALARRAGERANPDRDQHFLVDDRVLDRIPGYLPDDADTSHLLEIGGGAGALTDRLLAAIT 78

Query: 69  ---------GARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISS 117
                        + VIE+D  F   L++  +       L++I+ DAL VD   F     
Sbjct: 79  SSADTDTAPAPGHLSVIERDGTFADFLREEFATAIDDGLLDVIEGDALDVDLPDF----- 133

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
               +ANLPY + + + F  +      P  + L L+FQ E  ER+ A      YGRLSV 
Sbjct: 134 -TACVANLPYGVSSEIAFRLL------PEGKPLVLMFQAEFAERMVASAGESEYGRLSVS 186

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKT 236
                   ++  +    F P P V S V+  +P         E+   +  +  F +RRKT
Sbjct: 187 AQHYAAVEIVERVPKEAFDPQPAVESAVVRCLPRDPDYEVGDEAFFLRFVKALFTQRRKT 246

Query: 237 LRQSLKRLG-------GENLLHQAGIE-TNLRAENLSIEDFCRITNILTDN 279
           +R +++  G        E ++  A  +    R  +L    F  +  +  ++
Sbjct: 247 VRNAIRNTGHISGLDDPEAVVDAADEDLLRQRPGDLEPSSFAALAELAREH 297


>gi|195953427|ref|YP_002121717.1| ribosomal RNA adenine methylase transferase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|254807870|sp|B4U9C8|RSMA_HYDS0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|195933039|gb|ACG57739.1| ribosomal RNA adenine methylase transferase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 252

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 114/259 (44%), Gaps = 21/259 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + PKK  GQNFL   NI   I E     +  TVIEIG G G LT+ L     +++I++E 
Sbjct: 2   LKPKKTFGQNFLKSKNIAHSIVELLDVKEDDTVIEIGPGLGALTEFLYQKPKKELILVEL 61

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+  F +L+           ++ +DA  VD   + N    ++II NLPYN+   +L N I
Sbjct: 62  DKDIFGLLEKKYKNA----TLLNEDASLVDLSSYKN----LKIIGNLPYNMYASILINMI 113

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           + +        +  + QKEVGER+        +  L             F +    F P 
Sbjct: 114 NQEKH---ISKMVFMLQKEVGERLITDSKDKSW--LWAYANTYFNIHYAFSVPGRFFEPV 168

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           PKVTS V+ F    +      ++     ++ F  RRK L+  L  +  +  L        
Sbjct: 169 PKVTSCVLVFDKKEDTPSFEKQNYMDFLKKMFSNRRKMLKHKLNNIEDKYALK------- 221

Query: 259 LRAENLSIEDFCRITNILT 277
            R E LS+ED   I N L+
Sbjct: 222 -RVEELSLEDIKYIYNTLS 239


>gi|294660187|ref|NP_852792.2| dimethyladenosine transferase [Mycoplasma gallisepticum str.
           R(low)]
 gi|298286858|sp|Q7NC69|RSMA_MYCGA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|284811837|gb|AAP56360.2| dimethyladenosine transferase [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930252|gb|ADC30191.1| dimethyladenosine transferase [Mycoplasma gallisepticum str.
           R(high)]
          Length = 268

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 20/280 (7%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M NK   +     + +  P K  GQNFL+D NI+  + E+   ++   V+EIG G G ++
Sbjct: 1   MINK---INKFFKNNEFSPSKQRGQNFLIDQNIINNVVEAVSKINPSKVLEIGPGLGAIS 57

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN-ISSPIRI 121
           + L+   A     IE D++ F  L +   +      I+  DAL++D++  F+ +     +
Sbjct: 58  EQLIKRFADNYYAIELDKKLFHHLNERLLKD----HILHADALEIDWKSIFDNLGDNPTM 113

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           + NLPYNI ++L+  +I +      +    ++ QKE+G R+ A+ NS  Y   S L  + 
Sbjct: 114 VGNLPYNISSKLIKKFILST-----YRCAIIMVQKEMGLRLLAKINSKDYSAFSALCQYS 168

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
              + + +I+   F P PKV ST++             E   K+    F  RRKT+  +L
Sbjct: 169 LSVSKIIEINETAFIPQPKVRSTLLFLEKKDIAFNEGYEKFLKLI---FLSRRKTILNNL 225

Query: 242 KRLGGENL----LHQAGIETNLRAENLSIEDFCRITNILT 277
           K      L    L   G +   RA+ LS      +   L+
Sbjct: 226 KNNYDPKLIIQSLVSLGFKKTSRAQELSPTQLFSLYESLS 265


>gi|18313918|ref|NP_560585.1| dimethyladenosine transferase [Pyrobaculum aerophilum str. IM2]
 gi|27151587|sp|Q8ZTJ4|RSMA_PYRAE RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|18161487|gb|AAL64767.1| dimethyladenosine transferase [Pyrobaculum aerophilum str. IM2]
          Length = 228

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 118/252 (46%), Gaps = 31/252 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + Q+FL D ++ + IA       G+ VIE+G G G LT  L    ++ V  IE D+ 
Sbjct: 3   RRRLAQHFLRDPSVAEYIAGL--VPSGLDVIEVGPGAGALTIPLAKR-SKTVYAIEIDKA 59

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+ I+   P  + II  DAL+V++ +          ++N+PY+I + LLF  I   
Sbjct: 60  LAERLRGIA---PPNVVIIVGDALEVEWPRA------DFFVSNVPYSITSPLLFKLIRHR 110

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                     L  Q+EV ER+ A+  S  YGRL+V         ++  + P+VF P PKV
Sbjct: 111 LP------AVLTIQREVAERLVARPGSEDYGRLTVAVQCFYDVEILRVLPPYVFDPPPKV 164

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S V+  +P   P     +  +K +   F  RRKTLR+          L  A  ++  R 
Sbjct: 165 YSAVVRLMPKA-PCVDNFDEFEKFSAWLFSARRKTLRR----------LKLA--DSTKRV 211

Query: 262 ENLSIEDFCRIT 273
             L++E+   + 
Sbjct: 212 YQLTLEELVELF 223


>gi|237835739|ref|XP_002367167.1| dimethyladenosine transferase, putative [Toxoplasma gondii ME49]
 gi|211964831|gb|EEB00027.1| dimethyladenosine transferase, putative [Toxoplasma gondii ME49]
 gi|221506158|gb|EEE31793.1| dimethyladenosine transferase, putative [Toxoplasma gondii VEG]
          Length = 494

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 11/236 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +  +K  GQ+ L +  +L KI +++      TV+EIG G GNLT  LL + AR+V+ ++
Sbjct: 167 GLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALD 225

Query: 78  KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D +    +K  +  +    L +   DAL+ D   F          ANLPY I +  L  
Sbjct: 226 VDARMVNEVKKRAISNGFMNLAVRHGDALRSDLGVF------DVCAANLPYQISSHFLLR 279

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++     P +    L+FQKE GER+ AQ    +Y RL+           +  +    F 
Sbjct: 280 LLAHR---PPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVDAKHFT 336

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P PKV S V+  +P  N I    +    + +  FG++ +TL    +R    ++L  
Sbjct: 337 PPPKVDSVVVKVVPRPNLIDVDFKEWDGLMRICFGRKNRTLHALFRRASILSMLEA 392


>gi|228898795|ref|ZP_04063078.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 4222]
 gi|228905838|ref|ZP_04069736.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 200]
 gi|228937344|ref|ZP_04099991.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228950590|ref|ZP_04112725.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228956483|ref|ZP_04118280.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228963140|ref|ZP_04124310.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228970230|ref|ZP_04130890.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976800|ref|ZP_04137213.1| Dimethyladenosine transferase [Bacillus thuringiensis Bt407]
 gi|229039946|ref|ZP_04189711.1| Dimethyladenosine transferase [Bacillus cereus AH676]
 gi|229067806|ref|ZP_04201124.1| Dimethyladenosine transferase [Bacillus cereus F65185]
 gi|229107728|ref|ZP_04237365.1| Dimethyladenosine transferase [Bacillus cereus Rock1-15]
 gi|229125559|ref|ZP_04254592.1| Dimethyladenosine transferase [Bacillus cereus BDRD-Cer4]
 gi|229148451|ref|ZP_04276708.1| Dimethyladenosine transferase [Bacillus cereus m1550]
 gi|229176642|ref|ZP_04304047.1| Dimethyladenosine transferase [Bacillus cereus 172560W]
 gi|229188327|ref|ZP_04315376.1| Dimethyladenosine transferase [Bacillus cereus ATCC 10876]
 gi|228595126|gb|EEK52896.1| Dimethyladenosine transferase [Bacillus cereus ATCC 10876]
 gi|228606809|gb|EEK64225.1| Dimethyladenosine transferase [Bacillus cereus 172560W]
 gi|228634993|gb|EEK91565.1| Dimethyladenosine transferase [Bacillus cereus m1550]
 gi|228657876|gb|EEL13681.1| Dimethyladenosine transferase [Bacillus cereus BDRD-Cer4]
 gi|228675701|gb|EEL30908.1| Dimethyladenosine transferase [Bacillus cereus Rock1-15]
 gi|228715290|gb|EEL67148.1| Dimethyladenosine transferase [Bacillus cereus F65185]
 gi|228727405|gb|EEL78597.1| Dimethyladenosine transferase [Bacillus cereus AH676]
 gi|228782896|gb|EEM31061.1| Dimethyladenosine transferase [Bacillus thuringiensis Bt407]
 gi|228789465|gb|EEM37384.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228796525|gb|EEM43963.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228803173|gb|EEM49994.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228809065|gb|EEM55549.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228822302|gb|EEM68283.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228853778|gb|EEM98537.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 200]
 gi|228860820|gb|EEN05197.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 4222]
          Length = 220

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 19/222 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + FN        + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +             ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                   + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218


>gi|242788270|ref|XP_002481185.1| dimethyladenosine transferase [Talaromyces stipitatus ATCC 10500]
 gi|218721332|gb|EED20751.1| dimethyladenosine transferase [Talaromyces stipitatus ATCC 10500]
          Length = 421

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 103/254 (40%), Gaps = 27/254 (10%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDG------------------ITVIEIGAGPGN 60
                 +GQ+ L +  I   I + +   +                     + ++G G G 
Sbjct: 33  FKFNTDIGQHILKNPGIADAIVDKANIKEHEVVADMLSISCKTRIAQADNIAQVGPGTGV 92

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSP 118
           LT+ +L   A+    IE D +    L  +    P   +L+II  D +KVD ++  +    
Sbjct: 93  LTRRILA-KAKSCTAIELDPRMAAELTKMVQGTPMQRKLKIILGDFIKVDLKEIGHFD-- 149

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
              I+N PY I + L+F  ++    P       L+ Q+E  +R+ A+     Y RLSV  
Sbjct: 150 -VFISNTPYQISSPLVFKLLAMPRPP---RVSILMVQREFAQRLIARPGDAMYSRLSVNA 205

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLR 238
            +    + +  +  + F P P+V S+V+   P  +      E L  + +  F ++ KTLR
Sbjct: 206 QFHAICSHILKVGKNNFSPPPQVESSVVRIEPRPDRPDISWEELDGMLRICFNRKNKTLR 265

Query: 239 QSLKRLGGENLLHQ 252
            S        L+ +
Sbjct: 266 SSFFVKQVRELIER 279


>gi|302830902|ref|XP_002947017.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f.
           nagariensis]
 gi|300268061|gb|EFJ52243.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f.
           nagariensis]
          Length = 463

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 87/338 (25%), Positives = 133/338 (39%), Gaps = 73/338 (21%)

Query: 7   SHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
             ++ T+ + Y  +I  KK +GQNFL D  +L+ I  ++G      V+E+G G GNLT+ 
Sbjct: 90  PSAISTVANLYEDRIKAKKSLGQNFLTDDAVLQDIVAAAGVGPQDLVLEVGPGTGNLTKH 149

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF------------ 112
           LL  GA  V  +EKD   +  L+      P RL +I  DALKV  E              
Sbjct: 150 LLASGAG-VTAVEKDDTLYGRLQKEYGDVP-RLTLIHGDALKVGLEDIIRGMMLQQDRQD 207

Query: 113 ----------------------------------FNISSPIRIIANLPYNIGTRLLFNWI 138
                                                   ++++ANLPYNI   LL   +
Sbjct: 208 PAASSESVSSAESALASTSTSGASSRGYKPGSSAAAGGRKVKVVANLPYNITKDLLTLLL 267

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKA------------T 185
               W      L ++ Q E   R+T      P +   ++ T +  +              
Sbjct: 268 PLGDW---ISDLHIMIQHEAAVRLTEHTPGGPEWRAANIRTLFYCRPRHGGGWAGRGRSR 324

Query: 186 MMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
             F IS   + P P V   ++ F    P   P      +   +  +AF +RRK +R SL+
Sbjct: 325 YRFRISRLKYDPVPGVDGALVTFSLIPPSARPAVPSERAFHSLVVKAFSERRKKMRNSLQ 384

Query: 243 RLGG----ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
            L G    E  L + G+  + RA++LS+E F   +  L
Sbjct: 385 PLYGAEQVEAALSECGLNADSRAQDLSLEQFVAFSRQL 422


>gi|221485301|gb|EEE23582.1| dimethyladenosine transferase, putative [Toxoplasma gondii GT1]
          Length = 494

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 11/236 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +  +K  GQ+ L +  +L KI +++      TV+EIG G GNLT  LL + AR+V+ ++
Sbjct: 167 GLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALD 225

Query: 78  KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D +    +K  +  +    L +   DAL+ D   F          ANLPY I +  L  
Sbjct: 226 VDARMVNEVKKRAISNGFMNLAVRHGDALRSDLGVF------DVCAANLPYQISSHFLLR 279

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++     P +    L+FQKE GER+ AQ    +Y RL+           +  +    F 
Sbjct: 280 LLAHR---PPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVDAKHFT 336

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P PKV S V+  +P  N I    +    + +  FG++ +TL    +R    ++L  
Sbjct: 337 PPPKVDSVVVKVVPRPNLIDVDFKEWDGLMRICFGRKNRTLHALFRRASILSMLEA 392


>gi|229142847|ref|ZP_04271290.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST24]
 gi|228640610|gb|EEK96997.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST24]
          Length = 220

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 19/222 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + FN        + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYAN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +             ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                   + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218


>gi|229027888|ref|ZP_04184043.1| Dimethyladenosine transferase [Bacillus cereus AH1271]
 gi|228733402|gb|EEL84229.1| Dimethyladenosine transferase [Bacillus cereus AH1271]
          Length = 220

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 19/222 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + F         + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +             ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                   + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218


>gi|228918992|ref|ZP_04082372.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840641|gb|EEM85902.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 220

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 19/222 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI----SSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + FN        + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +             ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVKDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                   + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218


>gi|228912781|ref|ZP_04076429.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925295|ref|ZP_04088392.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931544|ref|ZP_04094451.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943848|ref|ZP_04106234.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228983297|ref|ZP_04143511.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089173|ref|ZP_04220455.1| Dimethyladenosine transferase [Bacillus cereus Rock3-42]
 gi|229119704|ref|ZP_04248966.1| Dimethyladenosine transferase [Bacillus cereus 95/8201]
 gi|229136888|ref|ZP_04265516.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST26]
 gi|229153820|ref|ZP_04281951.1| Dimethyladenosine transferase [Bacillus cereus ATCC 4342]
 gi|229194432|ref|ZP_04321236.1| Dimethyladenosine transferase [Bacillus cereus m1293]
 gi|228589022|gb|EEK47036.1| Dimethyladenosine transferase [Bacillus cereus m1293]
 gi|228629624|gb|EEK86320.1| Dimethyladenosine transferase [Bacillus cereus ATCC 4342]
 gi|228646553|gb|EEL02759.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST26]
 gi|228663729|gb|EEL19307.1| Dimethyladenosine transferase [Bacillus cereus 95/8201]
 gi|228694136|gb|EEL47817.1| Dimethyladenosine transferase [Bacillus cereus Rock3-42]
 gi|228776411|gb|EEM24763.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228815805|gb|EEM62040.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828096|gb|EEM73823.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834342|gb|EEM79882.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846841|gb|EEM91845.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 220

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 19/222 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + F         + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +             ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                   + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218


>gi|229021649|ref|ZP_04178236.1| Dimethyladenosine transferase [Bacillus cereus AH1272]
 gi|228739652|gb|EEL90061.1| Dimethyladenosine transferase [Bacillus cereus AH1272]
          Length = 220

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 19/222 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + F         + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +             ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVKDETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                   + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218


>gi|229159215|ref|ZP_04287240.1| Dimethyladenosine transferase [Bacillus cereus R309803]
 gi|228624230|gb|EEK81031.1| Dimethyladenosine transferase [Bacillus cereus R309803]
          Length = 220

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 19/222 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + F         + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +             ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVADETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                     +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 177 FPKDKELLNQILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218


>gi|12045322|ref|NP_073133.1| dimethyladenosine transferase [Mycoplasma genitalium G37]
 gi|1346403|sp|P47701|RSMA_MYCGE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|3845058|gb|AAC72483.1| dimethyladenosine transferase [Mycoplasma genitalium G37]
 gi|166078652|gb|ABY79270.1| dimethyladenosine transferase [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 259

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 125/264 (47%), Gaps = 18/264 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P + +GQNF ++L+++K+I     +L+   ++EIG G G LT  LL L       IE 
Sbjct: 4   FFPSRKLGQNFTVNLSVIKRIFAFVKNLNPQAIVEIGVGKGALTNYLLKLKI-PYKGIEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L  +  +     ++++ D LK DF  FF   SP+ +  N+PY+I + ++  ++
Sbjct: 63  DKRLIEYL--LVEKILTEDQLVKGDILKKDFNSFFENLSPL-LCGNIPYSITSPIINKFL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            +        S  L+ QKE   R+ A+ NS  Y        +    T +F I  H F P 
Sbjct: 120 ESK-----LRSFVLMTQKEFANRLLAKVNSSDYSAFGAFCQYYLTITTVFKIDRHAFKPK 174

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAG 254
           PKV ST+I      N             ++ F +RRK L  +LK     + L     +  
Sbjct: 175 PKVDSTLILLE--KNKSVSYDFKFGLFLKQCFNQRRKMLINNLKHFFAVDYLLNIIQKQN 232

Query: 255 IETNLRAENLSIEDFCRITNILTD 278
           ++T++RA+ LS    C++ N+  +
Sbjct: 233 LKTSIRAQELSP---CQLFNLYQN 253


>gi|296128713|ref|YP_003635963.1| dimethyladenosine transferase [Cellulomonas flavigena DSM 20109]
 gi|296020528|gb|ADG73764.1| dimethyladenosine transferase [Cellulomonas flavigena DSM 20109]
          Length = 319

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 121/303 (39%), Gaps = 40/303 (13%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF+LD   ++KI   +  + G  V+E+G G G+LT  LL
Sbjct: 9   PAEIRALAERAGVRPTKTLGQNFVLDAGTVRKIVRQADVVAGERVVEVGPGLGSLTLGLL 68

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPN---------------------------RLEI 99
                 V+ +E D     +L    + H                             RL +
Sbjct: 69  EADVD-VVAVEIDPVLAALLPQTVAAHVPGLAVDPHAGTENTDARTVVLRDTAGRARLTV 127

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           +  DAL V          P  ++ANLPYN+   +L  ++         E   ++ Q EV 
Sbjct: 128 VTQDALTVT---ALPGPPPTALVANLPYNVSVPVLLTFLER---FDTLERGLVMVQAEVA 181

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCC 218
           +R+ A   S  YG  S    W   A     +   VF+P+P V S ++      +P     
Sbjct: 182 DRLAAPPGSRTYGVPSAKVAWYASARRTATVGRAVFWPAPHVDSALVRLDRRAHPAAGVP 241

Query: 219 LESLKKITQEAFGKRRKTLR-----QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
            + +  +   AF +RRK LR      +      E+ +  AG++  +R E + +  F RI 
Sbjct: 242 RQEVFAVVDAAFAQRRKMLRSALAGLAGSSAAAEDAVRAAGLDPQVRGEQVDVVGFARIA 301

Query: 274 NIL 276
             L
Sbjct: 302 EAL 304


>gi|213420100|ref|ZP_03353166.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 168

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 95/168 (56%), Gaps = 5/168 (2%)

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            P+R+  NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGRLSV
Sbjct: 1   QPLRVFGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSV 57

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRR 234
           +  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +IT EAF +RR
Sbjct: 58  MAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR 117

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           KT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 118 KTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 165


>gi|32266673|ref|NP_860705.1| dimethyladenosine transferase [Helicobacter hepaticus ATCC 51449]
 gi|62900572|sp|Q7VGZ3|RSMA_HELHP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|32262724|gb|AAP77771.1| dimethyladenosine transferase (rRNA methylation) [Helicobacter
           hepaticus ATCC 51449]
          Length = 283

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 122/269 (45%), Gaps = 16/269 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQNFL D + L KI +S   +     IEIG G G+LTQ LL +    +I  E D  
Sbjct: 7   KKRFGQNFLQDSHFLHKIIQSIPDIPIQC-IEIGVGLGDLTQELLKIE--SLIAYEVDLD 63

Query: 82  FFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              +L    S      RL II  D L +  ++ +  +   ++++NLPY I T ++   + 
Sbjct: 64  LCSLLNKKFSNQIQSGRLNIIYKDILNLPSQQAWLHTHEYKVVSNLPYYIATHIILRLLR 123

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                 F  +  ++ QKEV ++  A      +  LSVL     KA M+F++    F P P
Sbjct: 124 DR----FCRAFLVMTQKEVAQKFCATTGQKEFCALSVLVESFGKAKMLFEVPKEAFSPMP 179

Query: 200 KVTSTVIHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA--- 253
           KVTS+V     +             L+   + AF   RKTL ++L ++  + LL +    
Sbjct: 180 KVTSSVFVIHKYSQQNQIEDSFLCDLESFLKIAFYAPRKTLFKNLSQVFDKKLLEEVFEN 239

Query: 254 -GIETNLRAENLSIEDFCRITNILTDNQD 281
             I++N RA  +  + F  I   L    D
Sbjct: 240 ENIKSNARAHEVKTKSFHHILQFLKKRND 268


>gi|229182436|ref|ZP_04309688.1| Dimethyladenosine transferase [Bacillus cereus BGSC 6E1]
 gi|228601016|gb|EEK58584.1| Dimethyladenosine transferase [Bacillus cereus BGSC 6E1]
          Length = 220

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 19/222 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + F         + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +             ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDEIFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                   + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218


>gi|325968329|ref|YP_004244521.1| dimethyladenosine transferase [Vulcanisaeta moutnovskia 768-28]
 gi|323707532|gb|ADY01019.1| dimethyladenosine transferase [Vulcanisaeta moutnovskia 768-28]
          Length = 276

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 131/272 (48%), Gaps = 19/272 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L  ++  Y++  +K + Q+F++D  +++ I           V+EIG G G LT  L  +
Sbjct: 12  DLMNLIMKYRLRLRKRLSQHFVVDPMVIRDIISHVPL--NSNVLEIGTGIGILTYYLAKV 69

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            + +VI +E D +   I + + +Q  N + IIQ +AL++ + +         I++N+PY+
Sbjct: 70  TS-QVITVEIDGRLVRIAERVLNQL-NNISIIQGNALEIPWPQV------DIIVSNVPYS 121

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L+   I             L  Q+EV  R+ ++     YGRLS++T      +++ 
Sbjct: 122 ITSPLIIRIIREG-----IPRALLTIQREVANRLISKPGGDDYGRLSIITQCNYFVSILN 176

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247
              P  F+PSP++ S+++       P    +++L+ +T   F  R + LR  L +  G  
Sbjct: 177 TYPPDSFYPSPEIYSSLVMMT-KKEPCYGDMKALESVTNVLFRHRNRVLRWVLNKYLGSD 235

Query: 248 --NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             N L +A I  N R   L I++  +IT  L 
Sbjct: 236 AVNALMKANINVNARVRQLGIDELVKITEYLK 267


>gi|229074103|ref|ZP_04207150.1| Dimethyladenosine transferase [Bacillus cereus Rock4-18]
 gi|229094763|ref|ZP_04225769.1| Dimethyladenosine transferase [Bacillus cereus Rock3-29]
 gi|229100830|ref|ZP_04231645.1| Dimethyladenosine transferase [Bacillus cereus Rock3-28]
 gi|228682597|gb|EEL36659.1| Dimethyladenosine transferase [Bacillus cereus Rock3-28]
 gi|228688631|gb|EEL42503.1| Dimethyladenosine transferase [Bacillus cereus Rock3-29]
 gi|228708997|gb|EEL61123.1| Dimethyladenosine transferase [Bacillus cereus Rock4-18]
          Length = 220

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 19/222 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + F         + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +             ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+          ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTNETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                   + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 177 FPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 218


>gi|195589589|ref|XP_002084534.1| GD14323 [Drosophila simulans]
 gi|194196543|gb|EDX10119.1| GD14323 [Drosophila simulans]
          Length = 381

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 50/292 (17%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ ++  Y++  +K + QNFL+D  +  KI                          
Sbjct: 101 PMPTIRELVKLYRLQARKQLSQNFLMDERLTDKI-------------------------- 134

Query: 66  LTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIRI 121
                 +++++EKD +F     +LK+ +S    + +I  DD L+ + E+   + S  I +
Sbjct: 135 ------RLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTSQRIHL 188

Query: 122 IANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
           I NLP+ I TRLL NW+         +      +TL FQ+EV ERI A        RLSV
Sbjct: 189 IGNLPFAISTRLLINWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSV 248

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRK 235
           ++   T+  M F I    F P P+V   V+  IP   P        ++++ +  F  R+K
Sbjct: 249 MSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRHIFSMRQK 308

Query: 236 TLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             R+    L            L  +A ++  LR   L++E   R+  + +++
Sbjct: 309 YCRRGYGTLLPPEDREEVAQKLFERAEVQDTLRPFELTVEQCLRLAEVYSEH 360


>gi|50955322|ref|YP_062610.1| dimethyladenosine transferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|62900513|sp|Q6ADP1|RSMA_LEIXX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|50951804|gb|AAT89505.1| dimethyladenosine transferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 280

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 131/278 (47%), Gaps = 19/278 (6%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              ++ +     + P K +GQNF++D N +++I   +G   G  V+E+G G G+LT  LL
Sbjct: 9   PAEIRDLAELIGVAPTKRLGQNFVIDANTVRRIVRVAGVEAGEVVVEVGPGLGSLTLGLL 68

Query: 67  TLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             GAR V+ +E D +    L      ++ +   RL ++  DAL V          P R++
Sbjct: 69  EAGAR-VVAVEIDGRLAERLPLTVAQLAPEAAGRLTVVHSDALAVTE----LPERPGRLV 123

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ANLPYN+   +L + +      P   S  ++ Q EVG+RI A   S  YG  SV   W  
Sbjct: 124 ANLPYNVSVPVLLHLLER---VPSLRSGVVMVQAEVGQRIAAGPGSKVYGAPSVKAAWYG 180

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL--ESLKKITQEAFGKRRKTLRQS 240
                  +S  +F+P P V S ++ F  H          +    +   AF +RRKTLRQS
Sbjct: 181 VWRTAGTVSRQIFWPVPNVDSILVGFERHATEPGDDELRKRTFALVDAAFQQRRKTLRQS 240

Query: 241 LKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRIT 273
           L  + G+       L  AG+    R E L++ DF R+ 
Sbjct: 241 LAPVYGDPAAAGAALEAAGVAPRRRGEQLTLADFVRLA 278


>gi|123966249|ref|YP_001011330.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9515]
 gi|166221690|sp|A2BWR2|RSMA_PROM5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|123200615|gb|ABM72223.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 276

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 12/266 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL     ++  +E
Sbjct: 5   NHHQKKRFGQHWLVNNLILEKIKEVAELDEKDFILEIGPGKGALTSKLLDSKISRLHAVE 64

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+    +L +   ++  +  + Q D L  + +         ++IAN+PYNI   +L  +
Sbjct: 65  LDKDLIDLLNNKF-RNDKKFSLQQGDILSTNLDSI--NKKITKVIANIPYNITGPILDIF 121

Query: 138 ISA--DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
           I          ++ +  L QK+V +RI ++++S + G +SV     +    + D+ P  F
Sbjct: 122 IGRLGIVSKNNYKKIIFLMQKDVVDRILSKESSKNAGAMSVRMQLISNIKRICDVPPSSF 181

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLES---LKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S+++ F P        ++    + K+ Q +F  RRK +R +L  +  E+ + +
Sbjct: 182 NPPPKVFSSLVVFEPLRPEKRLDIKLERYIDKLLQISFNSRRKMIRNTLNSILSEDEIKK 241

Query: 253 A----GIETNLRAENLSIEDFCRITN 274
                 I  N R +++SI  + ++  
Sbjct: 242 LAELSEICFNSRPQDISINKWIKLAE 267


>gi|116004017|ref|NP_001070364.1| mitochondrial dimethyladenosine transferase 1 isoform 2 [Bos
           taurus]
 gi|83638584|gb|AAI09842.1| Transcription factor B1, mitochondrial [Bos taurus]
 gi|296483883|gb|DAA25998.1| mitochondrial dimethyladenosine transferase 1 isoform 2 [Bos
           taurus]
          Length = 226

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 14/208 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              +++ I+  +++   K + QNFLLDL +  KI   +G+L    V E+G GPG +T+ +
Sbjct: 14  PLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSI 73

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NIS 116
           L  G  +++V+EKD +F P L+ +S   P +L I+  D L    E+ F         +  
Sbjct: 74  LNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDP 133

Query: 117 SPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             + II NLP+++ T L+  W+         +      + L FQKEV ER+TA   S   
Sbjct: 134 PNVHIIGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTRMMLTFQKEVAERLTATTGSKQR 193

Query: 172 GRLSVLTGWRTKATMMFDISPHVFFPSP 199
            RLS++  +      +  I    F P P
Sbjct: 194 SRLSIMAQYLCDVQHILTIPGQAFVPKP 221


>gi|257051708|ref|YP_003129541.1| dimethyladenosine transferase [Halorhabdus utahensis DSM 12940]
 gi|256690471|gb|ACV10808.1| dimethyladenosine transferase [Halorhabdus utahensis DSM 12940]
          Length = 292

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 118/266 (44%), Gaps = 28/266 (10%)

Query: 27  QNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           Q+FL+D  +L +I   A  +G   G  V+EIGAG G LT  LL + A  V  +E+D    
Sbjct: 34  QHFLVDDRVLDRIPTYATEAGIDLG-HVLEIGAGNGALTDRLLAV-ADWVTAVERDPDLA 91

Query: 84  PILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             L+   +      RL +I+ DAL+VD   +         I+NLPY   + +LF  +   
Sbjct: 92  AFLRTEFADAIEAGRLTVIEGDALEVDLPDY------TASISNLPYGASSEILFRLL--- 142

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P  + L  + Q E  +R+ A   S  YGRLSV  G      ++  + P  F P P V
Sbjct: 143 ---PAGKPLIAMVQAEFADRMAADPGSDDYGRLSVTAGHYADVEVVEPVPPEAFSPPPAV 199

Query: 202 TSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLG-------GENLLHQA 253
            S ++  +P         +       +  F +RRKT+R  ++           + ++  A
Sbjct: 200 DSALVRALPREPNYTVPDDDFFLGFVKAVFTQRRKTVRNGIRNTAHISGLDDPDAVVDAA 259

Query: 254 GIE-TNLRAENLSIEDFCRITNILTD 278
             E    RA +LS  DF  + ++  +
Sbjct: 260 DEELLRKRAGDLSPTDFAELASLAHE 285


>gi|302421778|ref|XP_003008719.1| dimethyladenosine transferase [Verticillium albo-atrum VaMs.102]
 gi|261351865|gb|EEY14293.1| dimethyladenosine transferase [Verticillium albo-atrum VaMs.102]
          Length = 346

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  +   I   +G     TV+EIG G GNLT  +L   A+K+I IE 
Sbjct: 29  FKFNTNVGQHILKNPGVADAIVAKAGLKPTDTVLEIGPGTGNLTVRILE-NAKKLIAIEF 87

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +LE++  DA+KVD+  F        +I+N PY I + L+F 
Sbjct: 88  DPRMAAEVTKRVQGTPEQRKLEVMLGDAIKVDWVPF------DVLISNTPYQISSPLVFK 141

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ E G+R+ A+     YGRLSV   +    + +  +S   F 
Sbjct: 142 MLAMPKPP---RQAILMFQLEFGQRLVAKPGDKLYGRLSVNANFWATCSNVMKVSKANFR 198

Query: 197 PSPKVTSTVIHFIPHL--NPIPCCLESLKKITQE 228
           P P+V S V+  +P           E    + + 
Sbjct: 199 PPPQVDSCVVRIVPKQGSERPNIAFEEFDGLLRI 232


>gi|145591594|ref|YP_001153596.1| dimethyladenosine transferase [Pyrobaculum arsenaticum DSM 13514]
 gi|145283362|gb|ABP50944.1| dimethyladenosine transferase [Pyrobaculum arsenaticum DSM 13514]
          Length = 228

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 115/252 (45%), Gaps = 31/252 (12%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           + + Q+FL D ++ + I        G+ VIE+G G G LT  L    ++ V  IE D+  
Sbjct: 3   RRLSQHFLRDRSVAEFIVGL--VPGGLDVIEVGPGTGALTFPLAE-KSKTVYAIELDKSL 59

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              L+   ++ P  + +I  DAL+V++ K          ++N+PY+I + LL        
Sbjct: 60  AEQLR---ARAPPNVVVIWGDALQVEWPKA------DFFVSNMPYSITSPLLLKLARHRL 110

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                    +  Q+EV ER+ A   +  YGRL+V      +  ++  + P VF P PKV 
Sbjct: 111 P------AVVTVQREVAERMAAVPGTEEYGRLTVAIQCMYEVEVVRVLPPRVFSPPPKVY 164

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           S V+   P   P     E+ ++ T + F  RRKTLR+ LK       L Q+      R  
Sbjct: 165 SAVVTLRPKA-PCVDDFEAFERFTAKLFSARRKTLRR-LK-------LAQSD----KRVY 211

Query: 263 NLSIEDFCRITN 274
            L++E+   +  
Sbjct: 212 QLTVEEIVELFQ 223


>gi|298706896|emb|CBJ25860.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 310

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNR 96
           I + +       V+EIG G GNLT  LL   A++VI +E D +    +       +    
Sbjct: 3   IVDRAAVKRTDVVLEIGPGTGNLTVRLLER-AKRVIAVELDTRMVREVMKRVEGTEWEKS 61

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           L+IIQ D LKV    FF++     ++AN+PYNI + LLF  ++     P +    ++FQ+
Sbjct: 62  LQIIQGDVLKVPLP-FFDV-----LVANVPYNISSPLLFKLLAHR---PMFRCAVIMFQE 112

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           E  +R+TA+ N+  + RLSV T    K   +F ++ + F P PKV S V+       P P
Sbjct: 113 EFAQRLTARPNTDMWCRLSVNTQLLAKVDQLFKVNRNNFRPPPKVDSRVVRIELRNPPPP 172

Query: 217 CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH 251
                   + +  F ++ KTLR +L       LL 
Sbjct: 173 VNFTEWDGMIRVIFNRKHKTLRATLTTKATLKLLT 207


>gi|332296038|ref|YP_004437961.1| Ribosomal RNA small subunit methyltransferase A [Thermodesulfobium
           narugense DSM 14796]
 gi|332179141|gb|AEE14830.1| Ribosomal RNA small subunit methyltransferase A [Thermodesulfobium
           narugense DSM 14796]
          Length = 263

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 128/270 (47%), Gaps = 19/270 (7%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            + P K  GQNFL+D NI KKI ES+       ++EIG G G LT+ L+ L       IE
Sbjct: 3   NLAPLKRYGQNFLVDQNISKKIIESALIEKEDLILEIGPGKGALTKYLVKL-PNDYFGIE 61

Query: 78  KDQQFFPILKDISSQHPNRL-----EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            D+  + +L     +    L     +II  D L+ D      I   + +I+NLPYNI + 
Sbjct: 62  VDRGLYDLL---CKEFEKDLALCGKKIILADVLETD---LGFIEKKVNVISNLPYNIASL 115

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++   I  +    + +S+TL+ QKE+ +R+ A   +  YGRLSVL     + +++F++  
Sbjct: 116 IIVKMIKENI---YLKSMTLMIQKEMSQRLFAMPGAKEYGRLSVLVQNFFEGSIIFEVKE 172

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             F+P PKV S VI  IP  +           +   +  F + RK ++  L       + 
Sbjct: 173 SCFYPKPKVRSVVIRLIPKSDFYEKRLYFIDFENFLKRVFSQPRKIIKNVLTEKYI-RIF 231

Query: 251 HQAGIE-TNLRAENLSIEDFCRITNILTDN 279
            +   +  +LR E +  E + RI  +  + 
Sbjct: 232 SETNTDLLHLRPEQIDPETYWRIFRLSKER 261


>gi|307596557|ref|YP_003902874.1| dimethyladenosine transferase [Vulcanisaeta distributa DSM 14429]
 gi|307551758|gb|ADN51823.1| dimethyladenosine transferase [Vulcanisaeta distributa DSM 14429]
          Length = 276

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 19/272 (6%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L +++   ++ P K + Q+F++D  I++ I        G  V+E+G G G LT  L  +
Sbjct: 12  DLMSLIMRNRLKPIKRLSQHFVVDPTIIRDIVNHIP--RGSKVLEVGTGIGILTYYLARV 69

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A +VI IE D +   I + + S   N + IIQ DAL+V + +         +++N+PY+
Sbjct: 70  -ASQVITIEIDGRLVRIAEHVLSGL-NNVSIIQGDALRVPWPQV------DALVSNVPYS 121

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I + L+   I             L  Q+EV  R+T +  S  YGRLSV+T      +++ 
Sbjct: 122 ITSPLIMRIIKEGVP-----RALLTIQREVANRLTGEPGSDDYGRLSVITQCNYSVSILN 176

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
             +P  F+PSP+V S++I       P    +++L+ +T+  F  R + LR  L +  G +
Sbjct: 177 TYAPDSFYPSPEVYSSLIMMS-KKEPCYDDMDALESVTKLLFRHRNRVLRWVLNKYLGPS 235

Query: 249 LLHQ---AGIETNLRAENLSIEDFCRITNILT 277
            ++    AGI+ + R   L I +  +IT  L 
Sbjct: 236 AVNAVVNAGIDVSARVRQLGINELIKITGSLK 267


>gi|126459717|ref|YP_001055995.1| dimethyladenosine transferase [Pyrobaculum calidifontis JCM 11548]
 gi|126249438|gb|ABO08529.1| dimethyladenosine transferase [Pyrobaculum calidifontis JCM 11548]
          Length = 230

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 31/252 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++   Q+FL    + + I        G+ V+E+G G G LT  L    +R V  IE D+ 
Sbjct: 4   RRRFSQHFLKSREVAEFIVGL--VPPGLDVLEVGPGRGALTIPLAE-KSRVVYAIEIDRG 60

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+  +   P  + +I  DAL+V++            ++N+PY I + LL       
Sbjct: 61  LAEELRRAA---PPNVVVIVGDALEVEWP------PAQYFVSNVPYEITSPLLLKLARHR 111

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                     +  QKEV +R+ A+  +  YGRL+V         ++  + PH F P PKV
Sbjct: 112 LP------AVVTVQKEVADRLAAEPGTEEYGRLTVAVRCHYDVEVVRVLPPHAFSPPPKV 165

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S V+   P   P     E  ++ T   F  RRKTLR+          L  A  ++  R 
Sbjct: 166 YSAVVRLTPR-PPCIEDFEGFQRFTAALFSARRKTLRR----------LKLA--DSEKRI 212

Query: 262 ENLSIEDFCRIT 273
             LS+E+   + 
Sbjct: 213 FQLSLEEIVELY 224


>gi|229113716|ref|ZP_04243152.1| Dimethyladenosine transferase [Bacillus cereus Rock1-3]
 gi|228669713|gb|EEL25119.1| Dimethyladenosine transferase [Bacillus cereus Rock1-3]
          Length = 220

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 19/222 (8%)

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNI 129
           +  E DQ+  PIL +  + + N + +I  D LK D  + F         + ++ANLPY I
Sbjct: 1   MAFEIDQRLLPILDETLAPYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYI 59

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            T +LF  +             ++ QKEVG+R+ A+  +  YG LS+   + T+   +  
Sbjct: 60  TTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEVETVMT 116

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGG- 246
           +   VF P P V S +I  +    P+          ++ + +F +RRKTL  +L      
Sbjct: 117 VPRTVFVPQPNVDSAIIRLLKRPKPVVEVTNETFFFEVVRASFAQRRKTLMNNLSNNLNG 176

Query: 247 --------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                   + +L +  I+   R E LSIE+F  ++N L  ++
Sbjct: 177 FPKDKELLDRILTEVEIDPKRRGETLSIEEFATLSNALVLHK 218


>gi|269860446|ref|XP_002649944.1| dimethyladenosine transferase [Enterocytozoon bieneusi H348]
 gi|220066631|gb|EED44106.1| dimethyladenosine transferase [Enterocytozoon bieneusi H348]
          Length = 275

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 31/274 (11%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK   Q+ L++ N++  I + +       V+EIGAG GN+T  LL   A+KVI  EK
Sbjct: 3   VQLKKSESQHMLVNNNLIDVIIDKAKIKHTDIVLEIGAGTGNITMKLLP-KAKKVIAYEK 61

Query: 79  DQQFFPILKD---ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           D++    +++          +L +IQDD L+ +   F       + I+N+P+NI   ++ 
Sbjct: 62  DKKLANEIQNKLYTQKLLKAKLHLIQDDVLENNLPHF------DKCISNIPFNISLPIIL 115

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +++      +++  +L QKE  +R+T++  S  Y RLSV+     K   +  +  + F
Sbjct: 116 KLMNSH-----FKNAFILVQKEFADRLTSRPGSKDYSRLSVIVQLFAKVECVLKVKKNNF 170

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK----RLGGENLLH 251
            P PKV +  I   P +      L     + +  F ++ KTL  +LK    +   EN ++
Sbjct: 171 IPQPKVDTCFIKIEPKVPRPSLDLTEFDNLLKICFSRKNKTLMSNLKTPQMKKYIENSIN 230

Query: 252 QAGIE------------TNLRAENLSIEDFCRIT 273
               +             N R   +SIE +  + 
Sbjct: 231 CTNFDNQITSILDKLNYKNERPIKMSIEKYVSLF 264


>gi|1806115|emb|CAA92586.1| dimethylase [Kluyveromyces lactis]
          Length = 320

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 12/236 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +       V+EIG G GNLT  +L   ARKV+    
Sbjct: 29  FKFNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILEQ-ARKVVRRGV 87

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              +           P   +LEI+  D +K +   F         I+N PY I + L+F 
Sbjct: 88  RSSYGSGRTKRVHGTPVEKKLEILLGDFMKTELPYF------DVCISNTPYQISSPLVFK 141

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I+    P       L+FQ+E   R+ A+     Y RLS         T +  +  + F 
Sbjct: 142 LINQPKPP---RVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFR 198

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P PKV S+V+                  + +  F ++ +T+    K      +L +
Sbjct: 199 PPPKVESSVVRIEIKNPRPQVDFNEWDGLLRIVFVRKNRTIAAGFKSTTDLEILEK 254


>gi|13508418|ref|NP_110368.1| dimethyladenosine transferase [Mycoplasma pneumoniae M129]
 gi|2500512|sp|P75113|RSMA_MYCPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|1673824|gb|AAB95811.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase
           [Mycoplasma pneumoniae M129]
 gi|301633390|gb|ADK86944.1| dimethyladenosine transferase [Mycoplasma pneumoniae FH]
          Length = 263

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 124/265 (46%), Gaps = 15/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P + +GQNF +D +++ K      SL+   +IE+G G G LT+ LL L       IE 
Sbjct: 4   FYPSRKLGQNFTVDQSVIAKTCRLIKSLNPTALIEVGPGKGALTKALLKLQ-LPYHGIEL 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D++    L         +L I   DALK + +++F  + P+ +  N+PY+I + L+ N++
Sbjct: 63  DKRLAEYLLVNEILTEEQLTI--GDALKQNLDQYFPDTIPL-LCGNIPYSISSPLIANFL 119

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           ++       +   L+ Q E G+R+ A  NSP+Y    V   +  +   +F I    F P 
Sbjct: 120 ASK-----LQQFVLVCQWEFGQRLVAPVNSPNYSAFGVFCQYHLQIKSVFKIDKVAFKPK 174

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQAG 254
           P+V S ++       P         +  ++ F +RRK L  +LK+L       N+L Q  
Sbjct: 175 PQVDSVLMLL--KKKPQVAYEAHFGRFLKQCFHQRRKLLVNNLKQLLPPTLLTNVLQQQD 232

Query: 255 IETNLRAENLSIEDFCRITNILTDN 279
           +   +RA+ L+     R+   L  +
Sbjct: 233 LAATVRAQELTPTQLFRLYLSLKPH 257


>gi|227327730|ref|ZP_03831754.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 164

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 94/162 (58%), Gaps = 5/162 (3%)

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
               NLPYNI T L+F+     T+      +  + QKEV  R+ A  NS  +GRLSV+  
Sbjct: 1   MFFGNLPYNISTPLMFHLF---TYTQSIRDMHFMLQKEVVNRLVAGPNSKAFGRLSVMAQ 57

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTL 237
           +  +   + ++ P  F P+PKV S V+  +PH   P P   +  L +IT EAF +RRKTL
Sbjct: 58  YYCQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAEIPYPVSDIRVLSRITTEAFNQRRKTL 117

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           R SL  L   ++L + GI+ + RAEN+++E +CR+ N L+++
Sbjct: 118 RNSLGNLFTPDVLTELGIDVSSRAENVTVEQYCRLANWLSEH 159


>gi|116515030|ref|YP_802659.1| hypothetical protein BCc_089 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256884|gb|ABJ90566.1| dimethyladenosine transferase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 275

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 133/269 (49%), Gaps = 13/269 (4%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +++++     +P K +GQNFL +  I+ +I           +IEIG+G G LT  +  + 
Sbjct: 1   MRSLIYK-NHVPIKKLGQNFLQNKEIINQIINLININKNDNIIEIGSGLGALTFPICRI- 58

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS--PIRIIANLPY 127
            +K+IV+E D+     L    S    +L+II  D +K DF  FF++      R I NLPY
Sbjct: 59  IKKMIVLEIDEDLVFFL--TQSLFIKKLQIIIADIIKFDFCCFFSLQKYKKYRFIGNLPY 116

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           NI T      I    +      +  +FQKEV +R+ A   +  YGRLS++  +  K   +
Sbjct: 117 NIATIFFLKTIK---FLYNIIDMHFMFQKEVAKRLLATPGTKEYGRLSIIAQYFYKIETV 173

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
            +++   FFP+PKV ST + F P        I      L+ IT+ +F  RRK L  +L  
Sbjct: 174 INVNKFNFFPTPKVDSTFLRFTPKYFNSKYKIDKHFSVLELITRFSFQHRRKFLNNNLIS 233

Query: 244 LGGENLLHQAGIETNLRAENLSIEDFCRI 272
           L     L    I+   RAEN+S+  +C++
Sbjct: 234 LFSTKELISLDIDPYSRAENVSLIQYCKL 262


>gi|289642509|ref|ZP_06474653.1| dimethyladenosine transferase [Frankia symbiont of Datisca
           glomerata]
 gi|289507683|gb|EFD28638.1| dimethyladenosine transferase [Frankia symbiont of Datisca
           glomerata]
          Length = 319

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 122/278 (43%), Gaps = 16/278 (5%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              +++I +   I P K  GQNFL+D N ++++   +G     TV+EIG        + L
Sbjct: 30  PADVRSISAAVGIRPTKRRGQNFLVDPNTVRRLVRLAGVEPDETVLEIGP-GLGSLTLGL 88

Query: 67  TLGARKVIVIEKDQQFFPIL-----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
              AR+V+ +E D+     L       +      RL ++  D L+++     +   P  +
Sbjct: 89  LPAARRVVAVELDEALATALPATVTARLGPAVAARLTVLAADGLRLEPADI-SGDPPSVL 147

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
            ANLPYN+   LL   +      P      ++ Q EV +R+TA      YG  SV   W 
Sbjct: 148 AANLPYNVAVPLLLGVLER---FPSVRRGLVMVQAEVADRLTASPGGRVYGVPSVKMAWY 204

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQS 240
             A     +   VF+P P V S+++ F  H     P    ++      AF +RRKTLR +
Sbjct: 205 ASARPAGPVPRAVFWPQPNVDSSLVAFSRHDRQGSPRLRRAVFAAVDAAFAQRRKTLRAA 264

Query: 241 LKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
           L    G     E L   AGI+ + R E L +  F R+ 
Sbjct: 265 LSGWAGSADQAERLALAAGIDPSARGEILDVAAFTRLA 302


>gi|123968460|ref|YP_001009318.1| dimethyladenosine transferase [Prochlorococcus marinus str. AS9601]
 gi|166221691|sp|A2BR00|RSMA_PROMS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|123198570|gb|ABM70211.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. AS9601]
          Length = 274

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 138/270 (51%), Gaps = 12/270 (4%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++      KK  GQ++L++  IL+KI E +       ++EIG G G LT  LL    +K+
Sbjct: 1   MNSKNHHQKKRFGQHWLVNKKILEKIKEIAVLNQNDFILEIGPGKGALTSKLLDSEIKKL 60

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             IE D+    +L D  + + ++  + Q D L V+ +         ++IAN+PYNI   +
Sbjct: 61  HAIELDKDLINLLNDKFNNN-DKFSLQQGDILTVNLDSI--NKKITKVIANIPYNITGPI 117

Query: 134 LFNWISA--DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
           L  +I     T    +E +  L QK+V +RI +++ SP+ G LSV     +K   + D+ 
Sbjct: 118 LDIFIGRLGITRNYNYEKIIFLMQKDVVDRILSKEGSPNAGALSVRMQLLSKIKKICDVP 177

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           P  F P PKV S+++ F P  N +   +   +++ K+ + +F  RRK LR +L  +    
Sbjct: 178 PSSFSPPPKVFSSLVVFEPIKNHLRLDISIEKNIDKLLRISFNSRRKMLRNTLNSILSNE 237

Query: 249 LLHQAG----IETNLRAENLSIEDFCRITN 274
            +++      +  NLR +++SIE + ++  
Sbjct: 238 EINELSESSKVCFNLRPQDISIEQWIKLAE 267


>gi|257461216|ref|ZP_05626314.1| dimethyladenosine transferase [Campylobacter gracilis RM3268]
 gi|257441590|gb|EEV16735.1| dimethyladenosine transferase [Campylobacter gracilis RM3268]
          Length = 287

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 123/285 (43%), Gaps = 33/285 (11%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D  +L KI ++        V+EIGAG G+LT+ LL     ++   E 
Sbjct: 2   IRAKKEFGQNFLKDEAVLSKIIQAI-PGSVQNVVEIGAGLGDLTRKLLEF--YRLKSFEI 58

Query: 79  DQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D+  + IL    +Q      LE++  DAL++  E+         ++ANLPY + T+++  
Sbjct: 59  DEDLYQILSAKFAQQIASGELELVLGDALRIWQERRGLERGEYFLVANLPYYVATKMILQ 118

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I  +    F     ++ QKEV  +  A+     +  LS+L        ++FD+ P  F 
Sbjct: 119 AIDDELCGGFL----VMIQKEVALKFCARAGQSDFSALSILADLAGGCELLFDVEPDCFE 174

Query: 197 PSPKVTSTVIHFIPHLNPIP--------------------CCLESLKKITQEAFGKRRKT 236
           P+PKVTS+VI  I   N  P                       E  K   + +F   RKT
Sbjct: 175 PAPKVTSSVIRLIKGKNFKPGIEINADGLGVKSCARFQNLDEYEKFKSFLRVSFSAPRKT 234

Query: 237 LRQSLKRLGGENLLHQ----AGIETNLRAENLSIEDFCRITNILT 277
           L ++L       L+ +      I   +RA  L+   F  I   L 
Sbjct: 235 LIKNLSAKFDRGLVEEISLNLQIPPTVRAHELNSTFFLEIFKNLR 279


>gi|312085450|ref|XP_003144684.1| hypothetical protein LOAG_09107 [Loa loa]
 gi|307760150|gb|EFO19384.1| hypothetical protein LOAG_09107 [Loa loa]
          Length = 276

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 110/260 (42%), Gaps = 40/260 (15%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEII 100
           S      TV E+G+G GNLT +L+   A+KVI  E D++    LK     + H  +LE+ 
Sbjct: 15  SAIKATDTVFEVGSGTGNLTVVLME-KAKKVIACEIDRRMIAELKKRVIGTSHQQKLEMK 73

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
           Q D +K+++  FF++      IANLPY I +  +F  +     P +     L+FQKE  +
Sbjct: 74  QGDVIKMEWP-FFDVC-----IANLPYQISSPFVFRMLLQRPLPRY---AVLMFQKEFAD 124

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220
           R+ A+  S  Y RLSV   +  +   +  +    F P PKV S V+   P   P     +
Sbjct: 125 RLLAKPGSKLYCRLSVNVQFLAQVEHLMKVKRTEFRPPPKVDSAVVRIAPRNPPPQINFQ 184

Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----------------GIE-------- 256
               + +  F ++ KTL    K     + L ++                 I         
Sbjct: 185 EWDNLLRIVFLRKNKTLLSLFKNNQVCDSLEKSYRALYSIKNKEVESQFNIRDKVEHIIT 244

Query: 257 ----TNLRAENLSIEDFCRI 272
                + RA  +  EDF  +
Sbjct: 245 GSGFASKRARQMDTEDFLSL 264


>gi|315926638|gb|EFV06018.1| dimethyladenosine transferase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 254

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 14/245 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQNFL+D ++L KI ++    +   +IEIG G G+LTQ LL +   +V   E 
Sbjct: 2   VKAKKQYGQNFLIDKSVLAKIIQAI-PKEMNNIIEIGPGLGDLTQELLKIS--QVKAYEI 58

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D    PILK    +     +  +I  DA +           P  ++ANLPY + + ++  
Sbjct: 59  DNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSL--DEKPYFLVANLPYYVASHIILK 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +           L ++ Q+E+ E+  A++ +  +  L VL+    +  ++FD+ P  F 
Sbjct: 117 ALEDKNCL----GLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICERKILFDVDPQCFN 172

Query: 197 PSPKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE--NLLHQA 253
           P PKV S V+  I   +    C +E+ K   ++ F   RK L  +LK    +   +L   
Sbjct: 173 PPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNLKTYKAKVLEVLSTL 232

Query: 254 GIETN 258
           G++  
Sbjct: 233 GLKET 237


>gi|119871918|ref|YP_929925.1| dimethyladenosine transferase [Pyrobaculum islandicum DSM 4184]
 gi|226732612|sp|A1RRK0|RSMA_PYRIL RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|119673326|gb|ABL87582.1| dimethyladenosine transferase [Pyrobaculum islandicum DSM 4184]
          Length = 235

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 113/257 (43%), Gaps = 31/257 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+   Q+FL D ++ + I E      G+ +IE+G G G LT  L    ++ +  IE D  
Sbjct: 3   KRRWSQHFLRDTSVAQFITEL--VPSGLDIIEVGPGRGALTLPLAE-KSKTIYAIEIDPT 59

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LK    Q P  + +I  DAL++++ +          ++N+PY+I + LL       
Sbjct: 60  LAEFLKR---QAPPNVVVIVGDALEIEWPRA------DFFVSNIPYSITSPLLLKLAKYR 110

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                     +  QKEV ER+ A   + +YGRL+V         ++  + PHVF P PKV
Sbjct: 111 LP------AVVTIQKEVAERLVAAPGTENYGRLTVAIRCHYDVEVLRILPPHVFSPPPKV 164

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S V+   P   P     E+ ++ T   F  RRKTLR+ LK    E            R 
Sbjct: 165 YSAVVRLTPRR-PCVEDFENFQRFTARLFSTRRKTLRR-LKLGETE-----------KRV 211

Query: 262 ENLSIEDFCRITNILTD 278
             L++E+   +     D
Sbjct: 212 YQLTLEEIVELYKKHFD 228


>gi|300932590|ref|ZP_07147846.1| dimethyladenosine transferase [Corynebacterium resistens DSM 45100]
          Length = 256

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 107/244 (43%), Gaps = 30/244 (12%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEK 111
            G G+LT  LL      V  +E D +    L +  + +      +L +I+ DALKV    
Sbjct: 5   PGWGSLTLALLE-AVETVTAVEIDSRLAQKLPETVAHYAAGAGEKLGVIEMDALKVTRAD 63

Query: 112 FFNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
           F   S P+   ++ANLPYN+   +L + +      P  + + ++ Q EV +R+ AQ  S 
Sbjct: 64  FEAASRPLPTALVANLPYNVSVPVLLHLLEE---FPTIDRVLVMVQLEVADRLAAQPGSK 120

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL---NPIPCCLESL---- 222
            YG  SV   +    +    I  +VF+P+PK+ S ++    +     P       L    
Sbjct: 121 IYGVPSVKASYYGNVSRAATIGKNVFWPAPKIDSGLVRIDRYRAAERPWAEGAPELHTSA 180

Query: 223 --------KKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDF 269
                     +   AF +RRKTLR +L    G     E  L  AGI+   R E LS+ DF
Sbjct: 181 EQSLRKETFALADAAFLQRRKTLRAALSGHFGGAPQAEAALLAAGIDPKQRGEKLSVVDF 240

Query: 270 CRIT 273
            R+ 
Sbjct: 241 VRLA 244


>gi|118475585|ref|YP_892919.1| dimethyladenosine transferase [Campylobacter fetus subsp. fetus
           82-40]
 gi|171473008|sp|A0RRT6|RSMA_CAMFF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|118414811|gb|ABK83231.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) [Campylobacter fetus subsp. fetus
           82-40]
          Length = 268

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 16/262 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D NI  +I ++    D   ++EIG G G+LTQ L+ L +  +   E 
Sbjct: 2   IKVKKKFGQNFLQDENIKNQIIQAI-PNDVKRIVEIGPGLGDLTQKLVKLDS-MIDCFEI 59

Query: 79  DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D + + IL D         +L II  DAL    +     +S   ++ANLPY + T ++  
Sbjct: 60  DSELYTILLDKFRSELDSGKLNIINSDALNAWDK---LSASEYFLVANLPYYVATNMILK 116

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            I         + L ++ Q+EV  + +++     +  L++LT  + K  ++FD+    F 
Sbjct: 117 AIDDKNC----KGLVVMIQREVAIKFSSEAGDKEFSSLAILTWLKGKCELLFDVPSSAFN 172

Query: 197 PSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH---- 251
           P PKV S+VI  I   +  +    ++ K   + AF   RKTL ++L  L   + L     
Sbjct: 173 PPPKVISSVIRIIKDRDLSLNLKYDNFKNFLRVAFSAPRKTLLKNLSNLVQRDRLEIFFN 232

Query: 252 QAGIETNLRAENLSIEDFCRIT 273
              +   +R   LS+  + ++ 
Sbjct: 233 TENLSHTIRPHELSVALYLKLF 254


>gi|327311782|ref|YP_004338679.1| dimethyladenosine transferase [Thermoproteus uzoniensis 768-20]
 gi|326948261|gb|AEA13367.1| dimethyladenosine transferase [Thermoproteus uzoniensis 768-20]
          Length = 228

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 114/253 (45%), Gaps = 30/253 (11%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            ++ +GQ+ L D ++ + +A      +G  V+E+GAG G LT  L    A KV  IE D+
Sbjct: 1   MRRRLGQHMLRDRSVAEYMAGL--VPEGSVVLEVGAGTGTLTLELAKR-ASKVYAIELDR 57

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L   S++ P  +E+I  DAL++++             +N+PY I + LL      
Sbjct: 58  ALAAYL---SARAPPNVEVIVGDALRLEWP------PADFFASNIPYYISSPLLLRLAER 108

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                      ++ Q+EV ERI+A+  S +YGRL+V         ++  + P  F P P+
Sbjct: 109 RMP------AVVMLQREVAERISAEPGSENYGRLTVAVRCNYDVEVLRTVPPRAFSPPPQ 162

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           V S V+   P   P     +S +K T   F +RRK L + L R          G     R
Sbjct: 163 VYSAVVRLTPR-PPCVDDFKSFEKFTAMLFSQRRK-LARKLCR----------GAPEGKR 210

Query: 261 AENLSIEDFCRIT 273
              LS+++   + 
Sbjct: 211 VYQLSLDEVVELF 223


>gi|157736324|ref|YP_001489007.1| dimethyladenosine transferase [Arcobacter butzleri RM4018]
 gi|315635457|ref|ZP_07890723.1| dimethyladenosine transferase [Arcobacter butzleri JV22]
 gi|166987689|sp|A8EQW4|RSMA_ARCB4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157698178|gb|ABV66338.1| dimethyladenosine transferase [Arcobacter butzleri RM4018]
 gi|315480215|gb|EFU70882.1| dimethyladenosine transferase [Arcobacter butzleri JV22]
          Length = 265

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 16/255 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           K+  KK  GQNFL D  IL KI +S    +   ++EIG G G+LT+ L+    + +   E
Sbjct: 3   KVKAKKQYGQNFLKDSTILDKIIQSM-PNNNNHIVEIGPGLGDLTKNLVKY--KDLTAYE 59

Query: 78  KDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D     ILK   +       L++I  D L+   +          +IANLPY I T ++ 
Sbjct: 60  VDTDLIGILKSKFAIEIEKGNLKLIHTDVLEAWDKLKNLHDGKYDLIANLPYYIATNIIL 119

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT-KATMMFDISPHV 194
                +      E + ++ QKEV E+ TA+ N   Y  L ++T   +  + ++FD+    
Sbjct: 120 RAFEDE----LCEHIIVMVQKEVAEKFTAKTNDKEYSSLGIITELISINSKILFDVPAEA 175

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL---- 250
           F P PKVTS++++     +      +   K  +  F + RK L ++L  +  +N++    
Sbjct: 176 FDPPPKVTSSILYI--KKDMSKSLDKDFNKFLKACFIQPRKKLSKNLTTIFDKNIIFEIY 233

Query: 251 HQAGIETNLRAENLS 265
            +  I  N+R   +S
Sbjct: 234 KELNINDNVRPHEVS 248


>gi|239610737|gb|EEQ87724.1| dimethyladenosine transferase [Ajellomyces dermatitidis ER-3]
          Length = 330

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 103/225 (45%), Gaps = 20/225 (8%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKV 107
           TV+EIG G GNLT  +L   A+KVI +E D +    +       P   RLE++  D +K 
Sbjct: 10  TVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAAEVTKRVQGKPEQKRLEVLLGDVIKT 68

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   F         I+N PY I + L F  ++ D  P       L+FQ+E   R+ A+  
Sbjct: 69  DLPYF------DVCISNTPYQISSPLTFKLLAIDPAP---RVCILMFQREFAMRLFAKPG 119

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227
              Y RLSV      +   +  +  + F P P V S+V+  +P         +    + +
Sbjct: 120 DKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVESSVVRIVPKNPRPQISYDEWDGLLR 179

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA----ENLSIED 268
            AF ++ KT+R S   LG  ++L    +E+N R      N+ +ED
Sbjct: 180 VAFVRKNKTMRSSF--LGTTSVLD--MLESNYRTWCAQNNIPVED 220


>gi|84490322|ref|YP_448554.1| dimethyladenosine transferase [Methanosphaera stadtmanae DSM 3091]
 gi|119365032|sp|Q2NE42|RSMA_METST RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|84373641|gb|ABC57911.1| KsgA [Methanosphaera stadtmanae DSM 3091]
          Length = 271

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/259 (32%), Positives = 129/259 (49%), Gaps = 20/259 (7%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            + K IL  Y I       QN+L+D N L  I E++   D  T++EIGAG G LT  +  
Sbjct: 2   SNTKEILEKYNIKLDTNKSQNYLIDDNKLNIILENADIQDNETILEIGAGIGTLTLPMAK 61

Query: 68  LGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             A+KVI IEKD     ILK  I  +    +EII+DDALKVDF KF       ++++NLP
Sbjct: 62  -KAKKVIAIEKDPIIVDILKQQIIKEKLTNIEIIKDDALKVDFPKF------DKVVSNLP 114

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y I + + F  +        ++   L++Q E  +R+ A+ ++  Y RLSV   +R    +
Sbjct: 115 YQISSPVTFKLLEYP-----FKKAILMYQLEFAKRMQAKPDTHEYSRLSVALSYRADTKI 169

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           +  + P  F P PK+ S VI  IP  N      + L    +  F  R K  +++L +   
Sbjct: 170 IDTLPPEAFIPKPKIKSAVIELIPKNNKP--IDKLLDNTIRALFQHRNKKAKKALIQSA- 226

Query: 247 ENLLHQAGIETNLRAENLS 265
               H+ G++  +  + LS
Sbjct: 227 ----HELGVDKKVLKQKLS 241


>gi|328785046|ref|XP_624425.2| PREDICTED: probable dimethyladenosine transferase-like [Apis
           mellifera]
          Length = 280

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 112/291 (38%), Gaps = 66/291 (22%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
              I+    +GQ+ L +  +++ + E +       V+EIG                    
Sbjct: 18  KQGILFNTDIGQHILKNPLVIQSMVEKAAVRPTDVVLEIGP------------------- 58

Query: 76  IEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                     L+       + ++L+I+  D LK D   FF++      +AN+PY I + L
Sbjct: 59  --------AELQKRVQGTAYQSKLQIMIGDVLKTDLP-FFDLC-----VANIPYQISSPL 104

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +F  +      P +    L+FQ+E  ER+ A+     Y RLS+ T    +  ++  +  +
Sbjct: 105 VFKLL---LHRPMFRCAILMFQREFAERLVAKPGDKLYCRLSINTQLLARVDLLMKVGKN 161

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            F P PKV S V+   P   P P   +    +T+ AF ++ KTL  + K+     +L + 
Sbjct: 162 NFRPPPKVESNVVRIEPRNPPPPINYQEWDGLTRIAFVRKNKTLSAAFKQTTVLTMLEKN 221

Query: 254 ----------------GIE------------TNLRAENLSIEDFCRITNIL 276
                            I+             N RA  + I+DF  + +  
Sbjct: 222 YKLHCSLNNKIITEGFNIKDMISDILQKADAENKRARTMDIDDFISLLHAF 272


>gi|261194984|ref|XP_002623896.1| dimethyladenosine transferase [Ajellomyces dermatitidis SLH14081]
 gi|239587768|gb|EEQ70411.1| dimethyladenosine transferase [Ajellomyces dermatitidis SLH14081]
          Length = 330

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 20/225 (8%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKV 107
           TV+EIG G GNLT  +L   A+KVI +E D +    +       P   RLE++  D +K 
Sbjct: 10  TVLEIGPGTGNLTVKILE-KAKKVIAVELDPRMAAEVTKRVQGKPEQKRLEVLLGDVIKT 68

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D   F         I+N PY I + L F  ++ +  P       L+FQ+E   R+ A+  
Sbjct: 69  DLPYF------DVCISNTPYQISSPLTFKLLAINPAP---RVCILMFQREFAMRLFAKPG 119

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQ 227
              Y RLSV      +   +  +  + F P P V S+V+  +P         +    + +
Sbjct: 120 DKLYSRLSVNAQMWARIDHIMKVGKNNFKPPPAVESSVVRIVPKNPRPQISYDEWDGLLR 179

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA----ENLSIED 268
            AF ++ KT+R S   LG  ++L    +E+N R      N+ +ED
Sbjct: 180 VAFVRKNKTMRSSF--LGTTSVLD--MLESNYRTWCAQNNIPVED 220


>gi|218295759|ref|ZP_03496555.1| ribosomal RNA adenine methylase transferase [Thermus aquaticus
           Y51MC23]
 gi|218243918|gb|EED10445.1| ribosomal RNA adenine methylase transferase [Thermus aquaticus
           Y51MC23]
          Length = 278

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 108/211 (51%), Gaps = 14/211 (6%)

Query: 3   MNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M N      +++ +L  + +   +  GQNFL+    L +I E++    G  V E+G G G
Sbjct: 1   MANPLTSPKAVRELLERHGLFADRRFGQNFLVSEAHLHRIVEAARPFTG-PVYEVGPGLG 59

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            LT+ L   GA +V+ IEKD +  P+L++     P  + ++  DAL   +E+    S   
Sbjct: 60  VLTRALAEAGA-EVVAIEKDLRLKPVLEETLKGLP--VRLVFQDALAYPWEEVPEGS--- 113

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
            ++ANLPYNI T L+   +        +  L  L QKEV ER+TA+  +P YG LS+   
Sbjct: 114 LLVANLPYNIATSLVTRLLKTGR----FARLVFLVQKEVAERMTARPKTPAYGLLSLRVT 169

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
              +A  + D+ P  FFP PKV S ++   P
Sbjct: 170 HHAEAEKLLDLPPGAFFPPPKVVSALVRLHP 200


>gi|289548364|ref|YP_003473352.1| dimethyladenosine transferase [Thermocrinis albus DSM 14484]
 gi|289181981|gb|ADC89225.1| dimethyladenosine transferase [Thermocrinis albus DSM 14484]
          Length = 247

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 116/262 (44%), Gaps = 18/262 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQ+ L+   +LKKI E  G  +G  V+EIG G GNLT +LL     ++  IE 
Sbjct: 1   MRLKKQYGQHLLVSTGVLKKIVEELGVEEGDKVVEIGPGTGNLTLLLLQTPLAELHAIEL 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     IL+ +      RL++   DA +       ++   ++++ NLPYN+ + ++ N +
Sbjct: 61  DPDMLKILQRVE---DKRLQLHHADASRF---PLCSLGENLKVVGNLPYNVASLIVENTV 114

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 P       + QKEVGE++           LS           +  + P  F P 
Sbjct: 115 LHHRCIPL---ALYMVQKEVGEKLQEGA-----SWLSFFVRTFYDVFYIMSVPPQFFRPP 166

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           PKV S ++  +         L   KK     F  RRK L+  L+     ++L + G++  
Sbjct: 167 PKVNSALVKLVRKDTLPQLDLFEYKKFLDILFSHRRKALKNKLES----SILEKVGVDPM 222

Query: 259 LRAENLSIEDFCRITNILTDNQ 280
           LR E L +    R+  +  D++
Sbjct: 223 LRVEQLDLNTVLRLFAVWLDSK 244


>gi|297294370|ref|XP_001085304.2| PREDICTED: probable dimethyladenosine transferase [Macaca mulatta]
          Length = 284

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 104/268 (38%), Gaps = 48/268 (17%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I +                              KV+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIINSIID------------------------------KVVACE 56

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   F         +ANLPY I +  +F
Sbjct: 57  LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF------DTCVANLPYQISSPFVF 110

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      PF+    L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F
Sbjct: 111 KLL---LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNF 167

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ--- 252
            P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    + LL +   
Sbjct: 168 RPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYR 227

Query: 253 --AGIETNLRAENLSIEDFCRITNILTD 278
               +   +  E+ SI D  +I  ILT 
Sbjct: 228 IHCSVHNIIIPEDFSIAD--KIQQILTS 253


>gi|126696263|ref|YP_001091149.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9301]
 gi|166221687|sp|A3PCS3|RSMA_PROM0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|126543306|gb|ABO17548.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 274

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 135/262 (51%), Gaps = 12/262 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL    +K+  IE D+ 
Sbjct: 9   KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTSKLLNSEIKKLHAIELDKD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +L D  + + ++  + Q D L V+ +         ++IAN+PYNI   +L  +I   
Sbjct: 69  LINLLNDKFNNN-DKFSLQQGDILSVNLDSI--NKKITKVIANIPYNITGPILDIFIGRL 125

Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  +E +  L QK+V +RI +++ SP+ G LS+     +K   + D+ P  F P P
Sbjct: 126 GIIRKYNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKRICDVPPSSFSPPP 185

Query: 200 KVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-- 254
           KV S+++ F P  N +   +   + + K+ + +F  RRK LR +L  +     +++    
Sbjct: 186 KVFSSLVVFEPIKNDLRLDISLEKYIDKLLRISFNSRRKMLRNTLNTILSNEEINELSES 245

Query: 255 --IETNLRAENLSIEDFCRITN 274
             +  NLR +++SI+ + ++  
Sbjct: 246 SKVCFNLRPQDISIDQWIKLAE 267


>gi|256371337|ref|YP_003109161.1| ribosomal RNA adenine methylase transferase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256007921|gb|ACU53488.1| ribosomal RNA adenine methylase transferase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 279

 Score =  185 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 69/279 (24%), Positives = 124/279 (44%), Gaps = 13/279 (4%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
              +   L    + P K +GQNFL D NI +K A  +        +E+G G G+LT  L 
Sbjct: 6   KREIVAHLERIGLEPSKALGQNFLTDGNIARKEAALAAEAGLRVAVEVGPGLGSLTVWLA 65

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
                +V+ +E D++  P L ++ +    + + I   DAL    +       P  ++ANL
Sbjct: 66  EYF-DEVVALEADRRLIPALGEVLAARGIDNVRIEHADALA---DPLPLERRPSALVANL 121

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY+ G+++L   +       F E + ++ Q E  +RI A   +     L V       A 
Sbjct: 122 PYHSGSQILVRLVEEAW---FLERVVVMVQAEFADRIVAAAGTRACSALGVRLALSIDAH 178

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSL 241
           +   + P VF P P V S ++       P+    P   ++  +  +  F +RR+ LR++L
Sbjct: 179 VAAKVPPVVFHPQPTVWSKLVVADRRSEPLAVTEPTTFDATVRAIRHGFERRRQMLRRAL 238

Query: 242 KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                   L   GI+   RAE+L+++++  +   +  ++
Sbjct: 239 GD-DELAALDAVGIDPMRRAESLALDEWVALGRAIATSK 276


>gi|317505059|ref|ZP_07963006.1| dimethyladenosine transferase [Prevotella salivae DSM 15606]
 gi|315663837|gb|EFV03557.1| dimethyladenosine transferase [Prevotella salivae DSM 15606]
          Length = 209

 Score =  185 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 11/208 (5%)

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +E D++    L +   +   R  II +D L++D  K F+   P  +  N PY+I +++ 
Sbjct: 3   AVEIDRESVAFLHEKYPEL--RDNIIGEDFLRMDLCKVFS-HEPFVLTGNYPYDISSQIF 59

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
           F  +      P     T + Q+EV  R+ A   S  YG LSVL         +F +   V
Sbjct: 60  FKMLDNKDLIP---CCTGMIQREVALRMAAGPGSKAYGILSVLVQAWYDVEYLFTVDESV 116

Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           F P PKV S VI  + +  N + C     K++ +  F +RRK LR S+K++  +     A
Sbjct: 117 FNPPPKVKSAVIRMMRNQVNELGCDERLFKRLVKTVFNQRRKMLRVSIKQMFSKEQPASA 176

Query: 254 GIET----NLRAENLSIEDFCRITNILT 277
              T      R E LS++ F  +TN++ 
Sbjct: 177 EFFTLEMMTKRPEQLSVQQFVELTNLVE 204


>gi|187251110|ref|YP_001875592.1| dimethyladenosine transferase [Elusimicrobium minutum Pei191]
 gi|186971270|gb|ACC98255.1| Dimethyladenosine transferase [Elusimicrobium minutum Pei191]
          Length = 261

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 112/260 (43%), Gaps = 19/260 (7%)

Query: 24  YMGQNFLLDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             GQ+FL++  ++ KI  +            +IEIG G G LT  LL  G + + +IE D
Sbjct: 3   KYGQHFLVNEGVIDKIVNAVVDARARHPKARIIEIGPGKGALTLRLLDKGIKDLKLIEID 62

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 L+ +    P+ +EIIQ D L  D          +  ++NLPY     +L   ++
Sbjct: 63  PIMVDHLRGVL---PSGVEIIQSDFLDTDLSLLSENG--VIFVSNLPYINAAEILNKVLN 117

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  + S   +FQ+E  +RI A +    Y  +S+ +        +  +SP  F P P
Sbjct: 118 YKN----FLSAVFMFQREQAQRIKAGEGDTFYSPISLTSQIAADIKSLCRVSPGSFNPPP 173

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN------LLHQA 253
           KV S V+ F  ++      L       Q AF  +RK +  S+     ++      LL  +
Sbjct: 174 KVESEVLCFERNIKIQEDLLNGFTLAVQAAFAYKRKNVLNSISEYFKKDKKEIFSLLESS 233

Query: 254 GIETNLRAENLSIEDFCRIT 273
            I  N RA+NL+  D+  + 
Sbjct: 234 KISPNCRAQNLTQTDYKVLA 253


>gi|78779250|ref|YP_397362.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9312]
 gi|119365046|sp|Q31B19|RSMA_PROM9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|78712749|gb|ABB49926.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9312]
          Length = 276

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 134/262 (51%), Gaps = 12/262 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL    +K+  IE D+ 
Sbjct: 9   KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTSKLLDSEIKKLHAIELDKD 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +L D  + + ++  + Q D L V+ +         ++IAN+PYNI   +L  +I   
Sbjct: 69  LINLLNDKFNNN-DKFSLQQGDILSVNLDSI--NKKITKVIANIPYNITGPILDIFIGRL 125

Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  +E +  L QK+V +RI +++ SP+ G LS+     +K   + D+ P  F P P
Sbjct: 126 GIIRNYNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRIQLLSKIKRICDVPPSSFSPPP 185

Query: 200 KVTSTVIHFIPHLNPIPCCL---ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-- 254
           KV S+++ F P  N +   +   + + K+ + +F  RRK LR +L  +     +++    
Sbjct: 186 KVFSSLVVFEPIKNDLRLDISLEKYIDKLLRISFNSRRKMLRNTLNSILSNEEINELSES 245

Query: 255 --IETNLRAENLSIEDFCRITN 274
             +  NLR +++SI  + ++  
Sbjct: 246 SKVCFNLRPQDISIHQWIKLAE 267


>gi|321311060|ref|YP_004193389.1| rRNA small subunit methyltransferase A [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802904|emb|CBY93550.1| rRNA small subunit methyltransferase A [Mycoplasma haemofelis str.
           Langford 1]
          Length = 263

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 14/259 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              KK  GQ FL +  I ++IAE    LD   ++E+G G G +TQ +    +RK  ++E 
Sbjct: 2   FRHKKRWGQVFLKNKRIQERIAEYINLLDAKNLLEVGPGEGAITQYI-NYESRKFSLVEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D     +L++        + II  D L +D E  F+    + +  N+PY I + +L  + 
Sbjct: 61  DSYLVGLLRERYPD----INIIFGDFLNLDLENLFSEREGL-VFGNIPYYITSPILRKFS 115

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            + +    +     + QKEV E IT+     +Y   +V          +F +    F P 
Sbjct: 116 ESKS----FSQAVFMVQKEVFESITSPPKGKNYTSFAVFLQTINDIRKVFYVGKENFVPV 171

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLHQAG 254
           PKV S VIH +     I   L       +++F   RK L  + K+       E +  +  
Sbjct: 172 PKVDSAVIHLVKKNTKILPYLNEYSLFLKKSFFMPRKKLVNNWKKFLSSEAIEEIFEEHN 231

Query: 255 IETNLRAENLSIEDFCRIT 273
           ++ ++R + +S + + +I 
Sbjct: 232 MDNSVRPDEISSDLYEKIF 250


>gi|327398208|ref|YP_004339077.1| dimethyladenosine transferase [Hippea maritima DSM 10411]
 gi|327180837|gb|AEA33018.1| dimethyladenosine transferase [Hippea maritima DSM 10411]
          Length = 241

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL++  +  KI E         ++EIG G G LT+ L  LG +K +V+E D+
Sbjct: 3   AKKQLGQHFLINEGVALKITERLKLA--DLIVEIGGGKGALTEKLKELG-KKTVVVELDK 59

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                LKD  S   N   +++ D       +FF +     +  NLPYN+   ++ N++  
Sbjct: 60  DLLTTLKDKISGEDNIF-LVRGD------GRFFKLKKSAWVCGNLPYNVSKAIIKNFVFQ 112

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           +    F E +  + QKEV E I A+     + + SVL         +F + P  F P PK
Sbjct: 113 NE---FVEKMVFMVQKEVAETICAKTAQKRFSKFSVLCQLFYDVEKLFLVKPGSFLPQPK 169

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR 260
           V S V+ F    N      +       + F   RKT++ +L+    E +          R
Sbjct: 170 VDSAVVEFRRKKNLPNID-KGFFSFLNQLFFFPRKTVKNNLRIPLDEEV-------ARKR 221

Query: 261 AENLSIEDFCRITN 274
             +L+IE+   I  
Sbjct: 222 PSDLTIEEMIMIWR 235


>gi|313888579|ref|ZP_07822244.1| putative dimethyladenosine transferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845308|gb|EFR32704.1| putative dimethyladenosine transferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 223

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 17/223 (7%)

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---S 117
           +T+ L  L A+KV+ +E D++   + K+        +++I  D L++D EK         
Sbjct: 1   MTEELA-LRAKKVVAVEIDEKLRDLHKETLDI--ENVKVIYGDFLELDLEKIVEEEFGDE 57

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             +++ANLPY + T ++   + +        S+T++ QKEV +R+ AQ  +  YG LSV 
Sbjct: 58  GFKVVANLPYYVTTPIIEKLLLSKVN---LISITVMVQKEVAKRLAAQPGNKDYGSLSVF 114

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             + T     F +   VF P P V S V++            + L KI + AF  RRKTL
Sbjct: 115 INYYTDCKYKFQVPSSVFMPKPNVDSAVVNLKMKERE-DLDTDFLFKIVRAAFTTRRKTL 173

Query: 238 RQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRIT 273
             S    G        +  L  +GI+   RAE LS+E+F  ++
Sbjct: 174 LNSFSNSGLPYSKDDIKRALELSGIDGGRRAETLSLEEFIILS 216


>gi|289450164|ref|YP_003475145.1| putative dimethyladenosine transferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184711|gb|ADC91136.1| putative dimethyladenosine transferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 300

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 23/288 (7%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           +N        LS Y++ P   +GQNF+ D  +L+ +           + EIGAG GNLT 
Sbjct: 7   SNDRKDFANYLSGYRLRPNHNLGQNFIYDKGLLQAMVAEMRLPPKCEIWEIGAGTGNLTA 66

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS------S 117
           +L     R V  IE D      L+D  + +P ++ +I  DALK+      N         
Sbjct: 67  VLAEQFPR-VTAIEIDPALARPLQDRFTSNP-KVRLIFGDALKLTAADLANSEEENSIID 124

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            I ++ NLPY I T+L+ +++            + L Q+E  +RI     S +YG L++L
Sbjct: 125 NIAVVGNLPYYISTKLIEHFL---LHFHTALQYSFLVQQEFVDRILTPAGSKNYGPLNIL 181

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRK 235
               T       ++   F P P V+ST+IH IP  N           +     AF +RRK
Sbjct: 182 LDNFTTIRKGMTLAATDFMPQPSVSSTLIHIIPQPNSQIDKSTWPDYRNFLHLAFAQRRK 241

Query: 236 TLRQSLKRLGGE----------NLLHQAGIETNLRAENLSIEDFCRIT 273
           T+  +  RL  E            L   G++  +R E ++ E++  + 
Sbjct: 242 TMHNTYARLQREYPLLNNTNDLEWLAGVGLKLQIRPEAITPENWLTLY 289


>gi|237751435|ref|ZP_04581915.1| dimethyladenosine transferase [Helicobacter bilis ATCC 43879]
 gi|229372801|gb|EEO23192.1| dimethyladenosine transferase [Helicobacter bilis ATCC 43879]
          Length = 313

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 28/295 (9%)

Query: 5   NKSHSLKTILS-HYKIIPKKYMGQNFLLDLNILKKIAE------SSGSLDGITVIEIGAG 57
           +K  +LK           KK +GQ+FL D  IL +I +      ++     + +IE+G G
Sbjct: 27  DKKATLKQHEKSKTHFHHKKSLGQHFLHDSVILDRIFQSIPHDIAAEIDKSVRLIEVGIG 86

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNI 115
            G+LT+ LL+     ++  E D       +         NRL+++Q D LKV     + +
Sbjct: 87  LGDLTKRLLSK--YSLLAYEIDYDLITQAEKNYHHEIETNRLQLVQADVLKVRHNDSYLL 144

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           SS   +++NLPY I T ++   +         +   ++ QKEV ++  A++    Y  LS
Sbjct: 145 SSDYFLVSNLPYYIATAIILQALKD----THCKGFLVMTQKEVAQKFCAKQKDSTYCSLS 200

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRK 235
           +L       + +F +    F P PKV S V  F          LESL      AF   RK
Sbjct: 201 LLAQSFGDISYLFSVPKEAFNPPPKVESAVFCFKRGKCHYTQDLESLLHF---AFLAPRK 257

Query: 236 TLRQSLKRLGG-------ENLLHQAGIETNLRAENLSIEDFCR---ITNILTDNQ 280
            L  +L +          +++     ++ N+RA  + ++++C    I N +  ++
Sbjct: 258 KLFSNLMQYDKLRDKAMLKHIFQTMQLDENVRAHEVGLQEYCDMLHIYNAMKKDK 312


>gi|257076452|ref|ZP_05570813.1| dimethyladenosine transferase [Ferroplasma acidarmanus fer1]
          Length = 239

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 112/257 (43%), Gaps = 25/257 (9%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +   K  GQ FL D NI  K     G   G  V+EIG G G LT +LL+    K+  IE 
Sbjct: 3   VNFAKKYGQVFLNDKNIAAKEVRLLGIEPGDHVLEIGPGHGILTGILLSEPV-KLTAIEP 61

Query: 79  DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +F+  LK     H    +  II++  L  +   F        II N+PYNI + +LF 
Sbjct: 62  DHRFYESLKISYHDHIVSGKFNIIKESFLDTEPSYF------DHIIGNIPYNISSPVLFK 115

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +  +     ++S  L+ QKE   R+ A+  +  Y R+++ T  R+   ++F+++  VF 
Sbjct: 116 ILDFN-----FKSSILMVQKEFARRLVARPGTKEYSRITINTSVRSTIKILFNVTRKVFS 170

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE 256
           P P V S VI  +     +   L +  K   + F  RRK L   L   G           
Sbjct: 171 PVPDVDSAVISIMKKD--VDIDLANFDKFIAKIFSMRRKKLSTILNYNGP---------F 219

Query: 257 TNLRAENLSIEDFCRIT 273
           +  R E L +     + 
Sbjct: 220 SEKRPEELDLSQLITLY 236


>gi|154310501|ref|XP_001554582.1| hypothetical protein BC1G_07171 [Botryotinia fuckeliana B05.10]
 gi|150851502|gb|EDN26695.1| hypothetical protein BC1G_07171 [Botryotinia fuckeliana B05.10]
          Length = 214

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 12/195 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQ+ L +  + + I + +      TV+E+G G GNLT  +L   A+KVI +E 
Sbjct: 28  FKHNKDYGQHILKNPGVAEAIVKKANLKPTDTVLEVGPGTGNLTVRILES-AKKVIAVEV 86

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   RLE++  D +K +   F         I+N PY I + L+F 
Sbjct: 87  DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTELPHF------DVCISNTPYQISSPLVFK 140

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +S    P       ++FQ+E   R+TA+     Y RLSV   +  K T +  +  + F 
Sbjct: 141 LLSLPNPP---RCSVVMFQREFALRLTARPGDSLYCRLSVNAQFFAKITPIMKVGKNNFR 197

Query: 197 PSPKVTSTVIHFIPH 211
           P P+  S V    P 
Sbjct: 198 PPPQGESCVGRIEPK 212


>gi|217073100|gb|ACJ84909.1| unknown [Medicago truncatula]
          Length = 225

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I   K  GQ+ L +  ++  I + SG      V+EIG G GNLT+ LL  G +KVI +E
Sbjct: 23  GISFHKSKGQHILKNPLLVDTIVQKSGIKTTDVVLEIGPGTGNLTKKLLEAG-KKVIAVE 81

Query: 78  KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D +    L       P +RL +IQ D LK +   F         +AN+PY I + L F 
Sbjct: 82  IDPRMVLELNKRFQGTPSSRLTVIQGDVLKTELPYF------DICVANIPYQISSPLTFK 135

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P +    ++FQ+E   R+ AQ     Y RL+V T    + + +  +  + F 
Sbjct: 136 LLKHQ---PAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARISHLLKVGRNNFT 192

Query: 197 PSPK 200
           P PK
Sbjct: 193 PPPK 196


>gi|302519786|ref|ZP_07272128.1| dimethyladenosine transferase [Streptomyces sp. SPB78]
 gi|302428681|gb|EFL00497.1| dimethyladenosine transferase [Streptomyces sp. SPB78]
          Length = 284

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 14/217 (6%)

Query: 1   MTMNNK---SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           MT  +       ++ + +   + P K  GQNF++D N +++I  ++   +  TV+E+G G
Sbjct: 1   MTRTDPLLGPADIRELAAALDVRPTKQRGQNFVIDANTVRRIVRTAEVRETDTVVEVGPG 60

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQF----FPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
            G+LT  LL + A  V  +E D          +     +      ++  DAL+V   +  
Sbjct: 61  LGSLTLALLEVAAD-VTAVEIDDTLAAALPATVAARLPEKAAHFRLVHSDALRV---REL 116

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
              +P  ++ANLPYN+   +L + +      P  E   ++ Q EV +R+ A   S  YG 
Sbjct: 117 PGPAPTALVANLPYNVAVPVLLHMLE---HFPSVERTLVMVQAEVADRLAAPPGSRVYGV 173

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
            SV   W         I   VF+P+P V S ++  + 
Sbjct: 174 PSVKAAWYAHVKRAGSIGRSVFWPAPNVDSGLVSLVR 210


>gi|157413292|ref|YP_001484158.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9215]
 gi|166987696|sp|A8G4P1|RSMA_PROM2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|157387867|gb|ABV50572.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 274

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 73/262 (27%), Positives = 130/262 (49%), Gaps = 12/262 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL    +K+  +E D  
Sbjct: 9   KKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTAKLLDSKIKKLHAVELDND 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +L D  + + ++  +   D L V+ +         ++IAN+PYNI   +L  +I   
Sbjct: 69  LINLLNDKFNNN-DKFSLQHGDILSVNLDSI--NKKITKVIANIPYNITGPILDIFIGRL 125

Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  +E +  L QK+V +RI +++ SP+ G LS+     +K   + D+ P  F P P
Sbjct: 126 GIIRNCNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKKICDVPPSSFSPPP 185

Query: 200 KVTSTVIHFIPHLN--PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-- 254
           KV S+++ F P  +   +   LE    K+ + +F  RRK LR +L  +     +++    
Sbjct: 186 KVFSSLVVFEPINDNLRLDISLEKYIDKLLRISFNSRRKMLRNTLNSILSNEEMNELSES 245

Query: 255 --IETNLRAENLSIEDFCRITN 274
             +   LR +++SI  + ++  
Sbjct: 246 SKVCFKLRPQDISINQWIKLAE 267


>gi|254525470|ref|ZP_05137522.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9202]
 gi|221536894|gb|EEE39347.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
           9202]
          Length = 274

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 129/262 (49%), Gaps = 12/262 (4%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           KK  GQ++L++  IL+KI E +   +   ++EIG G G LT  LL    +K+  +E D  
Sbjct: 9   KKRFGQHWLVNKIILEKIKEIAVLNENDFILEIGPGKGALTAKLLDSKIKKLHAVELDND 68

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +L D  + +  +  +   D L V+ +         ++IAN+PYNI   +L  +I   
Sbjct: 69  LINLLNDKFNNNA-KFSLQHGDILSVNLDSI--NKKITKVIANIPYNITGPILDIFIGRL 125

Query: 142 TWPP--FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                  +E +  L QK+V +RI +++ SP+ G LS+     +K   + D+ P  F P P
Sbjct: 126 GIIRNCNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKKICDVPPSSFSPPP 185

Query: 200 KVTSTVIHFIPHLN--PIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-- 254
           KV S+++ F P  +   +   LE    K+ + +F  RRK LR SL  +     +++    
Sbjct: 186 KVFSSLVVFEPIKDNLRLDISLEKYIDKLLRISFNSRRKMLRNSLNSILSNEEINELSES 245

Query: 255 --IETNLRAENLSIEDFCRITN 274
             +   LR +++SI  + ++  
Sbjct: 246 SKVCFKLRPQDISINQWIKLAE 267


>gi|283780372|ref|YP_003371127.1| dimethyladenosine transferase [Pirellula staleyi DSM 6068]
 gi|283438825|gb|ADB17267.1| dimethyladenosine transferase [Pirellula staleyi DSM 6068]
          Length = 308

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 32/303 (10%)

Query: 3   MNNKSHSLKTILSHY---KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M +   ++  + S +    I P+   GQNFL+DLN+L  +A+++   +   V+E+G G G
Sbjct: 1   MTSARQTVSYLTSRFREAGIRPEIRHGQNFLVDLNLLDLLADAAQITEDDVVLEVGTGLG 60

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------------V 107
           +LT  L    A +V+ IE D++   + ++      N + ++  DAL+            V
Sbjct: 61  SLTSRLAERAA-EVVTIEIDERLAAMAEEELEDFDN-VTLVLRDALESKHKLSTEVMDIV 118

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
             +         ++ ANLPYN+ T ++ N +++D  P    S+T+  QKE+ +RI A   
Sbjct: 119 RAKLAEAPGRRFKLAANLPYNVATLIISNLLASDPCPV---SMTVTIQKELADRIVAPHG 175

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKI 225
           +  Y  LS+    + +A ++  I P VF+P PKV S ++H                    
Sbjct: 176 TKDYSGLSIWVQSQCEAKIVRIIPPQVFWPPPKVHSAILHLEHSQALASQLRDPAYFHSF 235

Query: 226 TQEAFGKRRKTLRQSLKRLGGENLLHQAGIE---------TNLRAENLSIEDFCRITNIL 276
            +  F  RRK LR  L +L  +  L +  I+            RAE L +     +++ L
Sbjct: 236 IRAIFLHRRKFLRGVLAKLF-DGQLTKNDIDQLFVEKQLTPETRAEELPVATLVELSHWL 294

Query: 277 TDN 279
            D 
Sbjct: 295 LDR 297


>gi|149174955|ref|ZP_01853579.1| dimethyladenosine transferase [Planctomyces maris DSM 8797]
 gi|148846292|gb|EDL60631.1| dimethyladenosine transferase [Planctomyces maris DSM 8797]
          Length = 306

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 28/293 (9%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L  +   +   P+  +GQNFL+DLNI++ + E         V+E+G          +   
Sbjct: 12  LMQLFERHGFNPRSDLGQNFLIDLNIIEYVVEHGHIQPNDIVLEVGT-GTGGMTTFMAQQ 70

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK------------FFNISS 117
           A  VI +E D+    + ++ + ++ N + ++  DALK                   +  S
Sbjct: 71  AAHVITVEYDRNMHTLAQEATQKYDN-ITLLNCDALKNKNHMSPIVLDEIAAQLEAHPGS 129

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
            ++++ANLPYN+ T ++ N +++D     W  + +  Q E+G ++  +  S +YG LSV 
Sbjct: 130 QLKLVANLPYNVATPIISNIVASDLP---WNRMVVTIQYELGLKMACKPTSSNYGALSVW 186

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRK 235
              +    ++  + P VF+P P V S ++   P+             +   +  F  RRK
Sbjct: 187 LQSQCFVKLLKKLGPTVFWPRPGVDSAIVQLTPNPPLKQKIVDRVFFQDFLRRVFQHRRK 246

Query: 236 TLRQSLKRLGGENL--------LHQAGIE-TNLRAENLSIEDFCRITNILTDN 279
            +R +L  +  + L        L   GI+    RAE L++ +   + N   + 
Sbjct: 247 LMRSTLVGMYSKQLPKADVDAILLSHGIDKEKTRAEELNVPELIELANSFQEQ 299


>gi|315453543|ref|YP_004073813.1| putative dimethyladenosine transferase [Helicobacter felis ATCC
           49179]
 gi|315132595|emb|CBY83223.1| putative dimethyladenosine transferase (16S rRNA dimethylase)
           [Helicobacter felis ATCC 49179]
          Length = 292

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 37/291 (12%)

Query: 25  MGQNFLLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQ 80
           +GQ+FL D   L +I +S       + + ++EIG G G+LT  LL   G++ +I  E D+
Sbjct: 4   LGQHFLHDAFYLDQILQSIPYEHFNNEVQLVEIGVGLGDLTTRLLDRLGSKTLIAYEVDR 63

Query: 81  QFFPILKDISSQHP-NRLEIIQDDAL----------------KVDFEKF-FNISSPIRII 122
                LK   S     RLE++  D +                ++   +  F    P  ++
Sbjct: 64  ALAIGLKSRLSPASWARLELVVGDVMERKGVGNGTYDVLANTRLRVPRVGFLCDRPYFLV 123

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           +NLPY I T ++   +           + ++ Q EVG +  A   S  YG LSVL G   
Sbjct: 124 SNLPYYIATPIIARALRDSLCV----GMVVMTQLEVGLKFCAHVGSKDYGALSVLAGLTC 179

Query: 183 -KATMMFDISPHVFFPSPKVTSTVIHFIPHL----NPIPCCLESLKKITQEAFGKRRKTL 237
            +  + F++    F P PKV S+VI  I H      P    +E L+   ++ F   RKTL
Sbjct: 180 TRRELCFEVPKEAFNPPPKVRSSVIALIKHPLQDCAPSLEVIE-LETALKQCFQANRKTL 238

Query: 238 RQSLKRLGGENLLH----QAGIETNLRAENLSIEDFCRIT-NILTDNQDIA 283
             +LK +    +L     + G++   R   LS  D+  +  +++  ++  A
Sbjct: 239 SNNLKGICSPEVLQTFLSRHGLKPQARPHELSPTDYLDLACDLIQQSKIGA 289


>gi|134097339|ref|YP_001103000.1| N-6-aminoadenine-N-methyltransferase,erythromycin resistance
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291009285|ref|ZP_06567258.1| rRNA (adenine-N(6)-)-methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|150421549|sp|P07287|ERME_SACEN RecName: Full=rRNA adenine N-6-methyltransferase; Short=NMT;
           AltName: Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|6224590|emb|CAB60001.1| N-6-aminoadenine-N-methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909962|emb|CAM00074.1| N-6-aminoadenine-N-methyltransferase,erythromycinresistance
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 381

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 110/271 (40%), Gaps = 29/271 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL D   + +IAE++     + V+E G G G LT+ L    AR+V   E D +
Sbjct: 36  RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPGEGLLTRELADR-ARQVTSYEIDPR 94

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++  S HPN +E++  D L  +         P   +  +PY I + ++   + A 
Sbjct: 95  LAKSLREKLSGHPN-IEVVNADFLTAEPP-----PEPFAFVGAIPYGITSAIVDWCLEA- 147

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P  E+ T++ Q E   + T       + RL+V+T    +   +  +   +F P PKV
Sbjct: 148 ---PTIETATMVTQLEFARKRTGDYG--RWSRLTVMTWPLFEWEFVEKVDRRLFKPVPKV 202

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN- 258
            S ++       P+     LE  + + +  F      ++ SL R      +  A      
Sbjct: 203 DSAIMRLRRRAEPLLEGAALERYESMVELCFTGVGGNIQASLLRKYPRRRVEAALDHAGV 262

Query: 259 --------LRAENLSIEDFCRITNILTDNQD 281
                   +R E      + R+   L    +
Sbjct: 263 GGGAVVAYVRPE-----QWLRLFERLDQKNE 288


>gi|300681336|emb|CAZ96067.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570]
          Length = 319

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 124/269 (46%), Gaps = 22/269 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           G N++L+  + +++  ++G  +G  V+EIG G G+LT  LL  GA  V  +EKD+    +
Sbjct: 54  GANYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGA-TVFAVEKDKHMATL 112

Query: 86  LKDISSQHPNRLEIIQDD---------ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +KD       +L++I++D          L    EK+       ++++NLP+N+ T ++  
Sbjct: 113 IKDRFGST-EQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVSTEVVKL 171

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYGRLSVLTGWRTKATMMFDISPHVF 195
            +        +  + ++ Q E   R+       P Y  ++V   + +K    F +    F
Sbjct: 172 LL---PMGDVFSVVVIMLQDETAVRLADTSIQIPEYRPINVFVNFYSKPEYKFRVDRDNF 228

Query: 196 FPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----EN 248
           FP PKV   VI F        P     +S   +   AF  +RK LR+SL+ L      E 
Sbjct: 229 FPQPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRKMLRKSLQHLCSSSEIEA 288

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILT 277
            L   G+    R  +L ++DF R+ N LT
Sbjct: 289 ALDNIGLPVTARPSDLILDDFVRLHNHLT 317


>gi|288818058|ref|YP_003432406.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6]
 gi|288787458|dbj|BAI69205.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6]
 gi|308751659|gb|ADO45142.1| dimethyladenosine transferase [Hydrogenobacter thermophilus TK-6]
          Length = 249

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 116/258 (44%), Gaps = 19/258 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  KK  GQ+ LL   ++K I E     +G  ++EIG G GNLT+ LL    +K+ +IE 
Sbjct: 1   MRLKKRYGQHILLSKGVIKAIVERLSIQEGDILLEIGPGTGNLTRELLNTPLKKLYLIEI 60

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D Q    LK I     +R+EI   DA + D          ++++ NLPYN+ + ++ N +
Sbjct: 61  DSQMVHELKKIE---DDRVEIFLADATQFDICSL---GGELKLVGNLPYNVASLIVENTV 114

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                 PF      + QKEV +++           LS           +  +    FFP 
Sbjct: 115 IHRKCIPF---ALFMLQKEVAQKLLKGP-----SWLSTFVRTFYDLNYVMSVPARFFFPK 166

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           PKV S ++ F+   +  +    +  K+   + +  RRK    ++K    E++L  A I+ 
Sbjct: 167 PKVQSALLEFVRKPDGEMIEDEKDYKRFLTKLYSMRRK----AIKSKIEEDILKMANIDP 222

Query: 258 NLRAENLSIEDFCRITNI 275
             R E LS+     + N+
Sbjct: 223 LKRVEELSVAHVLLLYNL 240


>gi|221480961|gb|EEE19375.1| ribosomal RNA adenine dimethylase domain-containing protein,
           putative [Toxoplasma gondii GT1]
          Length = 914

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 126/276 (45%), Gaps = 25/276 (9%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
             PK+ +GQNFL D NI + IA S       G+ V+E+G G G +T+ LL    R +  +
Sbjct: 608 FKPKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPR-MSAV 666

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLF 135
           E D +   +L          L II  D L+V +        + + +  NLP+ + ++LL 
Sbjct: 667 ETDPRAVSLLSRRLP----TLNIIHGDVLQVSWPDLAQERGTRLSVAGNLPFYLTSQLLC 722

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             + +     F +   +  Q E+ ER+TA+     Y RLSV+        ++  +   VF
Sbjct: 723 CLLDS---WRFIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKLPRSVF 779

Query: 196 FPSPKVTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           +P PKV + ++H      P+            + +   AFG+RRK LR SLK      +L
Sbjct: 780 YPVPKVDAALVHIKFRQEPLEKILCGVDPRQFRNVLHAAFGQRRKMLRSSLKP-----VL 834

Query: 251 HQAGIET----NLRAENLSIEDFCRITNILTDNQDI 282
             +G       +LR + LS  DF  +T  +  ++D 
Sbjct: 835 PHSGAVPERFASLRPQQLSPTDFLELTEAIFPSKDA 870


>gi|242063872|ref|XP_002453225.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor]
 gi|241933056|gb|EES06201.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor]
          Length = 261

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 18/246 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL  GA  V  +EKD+
Sbjct: 2   PRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGA-TVFAVEKDK 60

Query: 81  QFFPILKDISSQHPNRLEIIQDD---------ALKVDFEKFFNISSPIRIIANLPYNIGT 131
               ++KD       +L++I++D          L    EK+       ++++NLP+N+ +
Sbjct: 61  HMATLVKDRFGST-EQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVSS 119

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFDI 190
            ++   +        +  + L+ Q E   R+  A    P Y  ++V   + +K    F +
Sbjct: 120 EVVKLLL---PMGDVFSVVVLMLQDETAVRLADASIQIPEYRPINVFVNFYSKPEYKFRV 176

Query: 191 SPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
               FFP PKV   VI F        P     +S   +   AF  +RK LR+SL+ L   
Sbjct: 177 DRENFFPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRKMLRKSLQHLCSS 236

Query: 248 NLLHQA 253
           + +  A
Sbjct: 237 SEIEAA 242


>gi|301101445|ref|XP_002899811.1| dimethyladenosine transferase, putative [Phytophthora infestans
           T30-4]
 gi|262102813|gb|EEY60865.1| dimethyladenosine transferase, putative [Phytophthora infestans
           T30-4]
          Length = 349

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 124/305 (40%), Gaps = 53/305 (17%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLD----GITVIEIGAGPGNLTQMLLTLGAR-KVIVI 76
           K+ +GQ+ L+   IL +I  +S   D     + V+EIG G GNLT  LL +  + +V  +
Sbjct: 37  KRKLGQHLLVSDGILDQIVAASELSDICSDTVRVLEIGPGTGNLTSTLLQVSPKMQVHAV 96

Query: 77  EKDQQFFPILKDISS----------QHPN--RLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           E D +    LK              +H +      + D   + + EK FN       +AN
Sbjct: 97  EFDPRMVEQLKLRFPTEIESGSLVLEHSDFEDFRFVPDQKQETNQEKIFN-----ACVAN 151

Query: 125 LPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           +PY + + ++    +    +P  ++   LL Q+E   R+ A+  +  Y RLS  T     
Sbjct: 152 IPYQLSSIVVSRLSNYMHRFPKTFKCAVLLVQEEFASRLLAEPGNKSYSRLSANTALVAN 211

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK----ITQEAFGKRRKTLRQ 239
            T +  +    F P PKV S VI  +P    +P   E   +    + +  F ++ KTLR 
Sbjct: 212 VTSVAKVPREHFLPPPKVDSRVIKLVPRAAALPSHDEQFFQKFDALLRLCFERKNKTLRA 271

Query: 240 SLKRLGG-------------------------ENLLHQAGIETNLRAENLSIEDFCRITN 274
            L                              E  L  +G+ +N RA  +S+ +F ++  
Sbjct: 272 LLLAKTARSQYELKEDTETEGEDKHQVVTERVEAALEASGLTSN-RAVKVSVTEFIKLLQ 330

Query: 275 ILTDN 279
            L + 
Sbjct: 331 ELQER 335


>gi|167042535|gb|ABZ07259.1| putative ribosomal RNA adenine dimethylase [uncultured marine
           microorganism HF4000_ANIW133F6]
 gi|167043080|gb|ABZ07791.1| putative ribosomal RNA adenine dimethylase [uncultured marine
           microorganism HF4000_ANIW141C7]
          Length = 290

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 119/276 (43%), Gaps = 31/276 (11%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSG----SLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           I P + +GQ+FLLD  ++ +  E +G           +EIG GPG+LT  LL  GAR V 
Sbjct: 17  IRPDRALGQHFLLDEAVIARAVELAGVDSPITAASHCLEIGPGPGSLTLELLRTGAR-VT 75

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +E D +    L  +      RL + Q DAL+VD+    +      I++NLP+ I + +L
Sbjct: 76  ALEVDAEAIAHLGRVFGTADGRLSVQQIDALQVDWPTDIS-----HIVSNLPFQISSPVL 130

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
                     P    + LL Q E  ER+  +  +   G L      +    +   +SP  
Sbjct: 131 DRIQKHHARNP-LSGIVLLVQDEFAERMVMKGGNASRGPLGHSLWLQFDIELDLRVSPSA 189

Query: 195 FFPSPKVTSTVIHFIP--HLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR--------- 243
           F P+P+VTS ++   P    N         + +    F  RR+ LR +LKR         
Sbjct: 190 FSPAPRVTSRLVALKPATRENTDQIDERLFRLVISSCFANRRRKLRTTLKRPPRRLNRIN 249

Query: 244 -------LGGENLLHQAGIETNLRAENLSIEDFCRI 272
                    G   L  A ++  LR ENL+ ED+  +
Sbjct: 250 GWHKERWTRGIERLEPALLD--LRPENLTSEDWASL 283


>gi|268678704|ref|YP_003303135.1| dimethyladenosine transferase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616735|gb|ACZ11100.1| dimethyladenosine transferase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 281

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 120/264 (45%), Gaps = 24/264 (9%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  KK  GQNFL D  ++ KI +S    +   +IEIG G G+LTQ LL +    V   E 
Sbjct: 2   IEAKKKFGQNFLKDTTVVSKIIQSM-PQNNRKLIEIGPGLGDLTQALLRVKP--VTAYEV 58

Query: 79  DQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D+     L+   +      +L ++Q D LK  FEK      P  ++ANLPY I T ++  
Sbjct: 59  DEDLCVYLRKKYTTKLAEGQLILVQTDVLK-QFEKGSLCEEPYDLVANLPYYIATTIILE 117

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +         +S+ ++ QKEV E+  A   +  +  L++L      AT++FD+SP  F 
Sbjct: 118 ALEDQNC----KSMIVMVQKEVAEKFAALPKTKEFTSLAILAQSIGTATILFDVSPESFE 173

Query: 197 PSPKVTSTVIHFIPHLNPIPCCL----------ESLKKITQEAFGKRRKT-LRQS---LK 242
           P PKV S+++        +              +  KK  + +F   RKT LR       
Sbjct: 174 PQPKVVSSILKIDKQTEFVDGKFSGIFENNEQLQKFKKYLRCSFQSPRKTWLRNISSEFD 233

Query: 243 RLGGENLLHQAGIETNLRAENLSI 266
           +    +++H+  +   +R   + +
Sbjct: 234 KSCVLHVMHEQNLPETIRPHEIGV 257


>gi|325990151|ref|YP_004249850.1| ribosomal RNA small subunit methyltransferase A [Mycoplasma suis
           KI3806]
 gi|323575236|emb|CBZ40901.1| Ribosomal RNA small subunit methyltransferase A [Mycoplasma suis]
          Length = 262

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 116/265 (43%), Gaps = 14/265 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  K+ + Q FL + NI K+IA +  S     ++EIG G G +TQ +  L  +  + +E 
Sbjct: 4   IKQKRELSQVFLRNKNIQKRIANAINSSGYKFLLEIGPGCGQITQYI-ELEEKVYLGVEV 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNW 137
           D      L    +       I+  D L +  E         + +  N+PY+I T++L  +
Sbjct: 63  DSSLCSHLTSKFTTA----NILNKDFLLLQEEDIQLFNEQKVLLFGNIPYSISTKILLKF 118

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +    +   +E   L+ QKE  E I+A+ N+  Y  L+V        + +F+I+   F+P
Sbjct: 119 L----YINHFEESFLMIQKEFFESISAKCNTKQYSSLAVFLQSFCDISKLFEINRLNFYP 174

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA---- 253
            PKV S               L+      ++ F   RK L  +L+++  EN+L +     
Sbjct: 175 KPKVDSIFFSIKKKEKHSEIFLKEYFDFIKKCFFSPRKILWNNLRKIYEENILEELFYKN 234

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
            +  N+R + L  E   ++   L +
Sbjct: 235 NLLKNIRIQELEPEKIMKLFKDLKE 259


>gi|237844915|ref|XP_002371755.1| dimethyladenosine synthase, putative [Toxoplasma gondii ME49]
 gi|211969419|gb|EEB04615.1| dimethyladenosine synthase, putative [Toxoplasma gondii ME49]
          Length = 908

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 123/272 (45%), Gaps = 17/272 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
             PK+ +GQNFL D NI + IA S       G+ V+E+G G G +T+ LL    R +  +
Sbjct: 602 FKPKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPR-MSAV 660

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLF 135
           E D +   +L          L II  D L+V +        + + +  NLP+ + ++LL 
Sbjct: 661 ETDPRAVSLLSRRLP----TLNIIHGDVLQVSWPDLARERGTRLSVAGNLPFYLTSQLLC 716

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             + +     F +   +  Q E+ ER+TA+     Y RLSV+        ++  +   VF
Sbjct: 717 CLLDS---WRFIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKLPRSVF 773

Query: 196 FPSPKVTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
           +P PKV + ++H      P+            + +   AFG+RRK LR SLK +      
Sbjct: 774 YPVPKVDAALVHIKFRQEPLEKILRGVDPRQFRNVLHAAFGQRRKMLRSSLKPVLPHGGA 833

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
                  +LR + LS  DF  +T  +  ++D 
Sbjct: 834 VPERF-ASLRPQQLSPTDFLELTEAIFPSKDA 864


>gi|325120439|emb|CBZ55993.1| putative dimethyladenosine transferase [Neospora caninum Liverpool]
          Length = 367

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 21/236 (8%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +  +K  GQ+ L +  +L KI +++      TV+EIG G GNLT  LL + AR+V+ ++
Sbjct: 48  GLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPV-AREVVALD 106

Query: 78  KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            D +    +K  +  +    L +   DAL+ D   F     P                  
Sbjct: 107 VDARMVSEVKKRAISNGFMNLVVRHGDALRSDLGTFDAQQPP------------------ 148

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +             L+FQKE GER+ AQ    +Y RL+           +  +    F 
Sbjct: 149 -LQERDTSTVTRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVEAKHFT 207

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P PKV S V+  +P  N +    +    + +  FG++ +TL    +R    ++L  
Sbjct: 208 PPPKVDSVVVKVVPRPNLLDVDFKEWDGLMRICFGRKNRTLHALFRRSSILSMLEA 263


>gi|296420592|ref|XP_002839853.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636059|emb|CAZ84044.1| unnamed protein product [Tuber melanosporum]
          Length = 294

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 37/236 (15%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I   +G      V+E+G G GNLT  +L   ARKVI +E 
Sbjct: 35  FRMNTDLGQHILKNPGVAQAIVNKAGLKQSDVVLEVGPGTGNLTVKILEQ-ARKVIAVEM 93

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   R+EI+  D +K +   F         I+N PY I + L+F 
Sbjct: 94  DPRMAAELTKRVQGKPEQTRVEILLGDVIKTELPYF------DVCISNTPYQISSPLVFK 147

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P    +  L+FQ+E   R+ AQ     Y RLS                     
Sbjct: 148 LLALSPAP---RTCILMFQREFAMRVVAQPGDTLYCRLS--------------------- 183

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
               V S+VI   P     P   +    + +  F ++ KT+    K      LL +
Sbjct: 184 ----VESSVIRIEPKNPRPPISYDEWDGLLRIVFVRKNKTIAAGFKSSAVMALLER 235


>gi|325973708|ref|YP_004250772.1| dimethyladenosine transferase [Mycoplasma suis str. Illinois]
 gi|323652310|gb|ADX98392.1| dimethyladenosine transferase [Mycoplasma suis str. Illinois]
          Length = 259

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 14/262 (5%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+ + Q FL + NI K+IA +  S     ++EIG G G +TQ +  L  +  + +E D  
Sbjct: 4   KRELSQVFLRNKNIQKRIANAINSSGYKFLLEIGPGCGQITQYI-ELEEKVYLGVEVDSS 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIGTRLLFNWISA 140
               L    +       I+  D L +  E         + +  N+PY+I T++L  ++  
Sbjct: 63  LCSHLTSKFTTA----NILNKDFLLLQEEDIQLFNEQKVLLFGNIPYSISTKILLKFL-- 116

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             +   +E   L+ QKE  E I+A+ N+  Y  L+V        + +F+I+   F+P PK
Sbjct: 117 --YINHFEESFLMIQKEFFESISAKCNTKQYSSLAVFLQSFCDISKLFEINRLNFYPKPK 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIE 256
           V S               L+      ++ F   RK L  +L+++  EN+L +      + 
Sbjct: 175 VDSIFFSIKKKEKYSEIFLKEYFDFIKKCFFSPRKILWNNLRKIYEENILEELFYKNNLL 234

Query: 257 TNLRAENLSIEDFCRITNILTD 278
            N+R + L  E   ++   L +
Sbjct: 235 KNIRIQELEPEKIMKLFKDLKE 256


>gi|126465678|ref|YP_001040787.1| dimethyladenosine transferase [Staphylothermus marinus F1]
 gi|126014501|gb|ABN69879.1| dimethyladenosine transferase [Staphylothermus marinus F1]
          Length = 268

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/269 (25%), Positives = 134/269 (49%), Gaps = 25/269 (9%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           +L  + I P+K + QNF+++  I+    +    L   T++EIGAG G+L+  L    ++ 
Sbjct: 19  LLRKHGIRPRKKLSQNFIVNPRIIHDFLK--HVLPNKTLLEIGAGIGSLSYYLSRKASKY 76

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            + IE D++   I +D+ S    R  +I  +AL +D+          ++I+N PY+I + 
Sbjct: 77  SVFIEIDERLSRICRDLISP---RGILINGNALDLDWS-------VEQVISNAPYHITSD 126

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++     +++          +FQK+V +R+ A+  +  YGR++VLT             P
Sbjct: 127 IIVKTARSNSVGY----AVFVFQKDVVDRLLARPGTKEYGRITVLTRLVFDIEKGPVYPP 182

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----- 247
             F+P P+V+S +I  +         +  ++++T+  F KRRK   ++LK +  E     
Sbjct: 183 IFFYPRPEVSSQMI-ILKRKRRYDEVISRVEEVTRLLFSKRRK---KALKTIMSELGLNI 238

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +++ + GI+   R  +LS E F ++   +
Sbjct: 239 DVIRRLGIDDKARVYDLSPEVFLKLAEEI 267


>gi|76799748|ref|ZP_00781834.1| Dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (Highlevel
           kasugamycin resistance protein ksgA)
           (Kasugamycindimethyltransferase) [Streptococcus
           agalactiae 18RS21]
 gi|76584901|gb|EAO61573.1| Dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (Highlevel
           kasugamycin resistance protein ksgA)
           (Kasugamycindimethyltransferase) [Streptococcus
           agalactiae 18RS21]
          Length = 171

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/177 (36%), Positives = 98/177 (55%), Gaps = 10/177 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + +K+ + + IL  +    KK  GQNFL D NIL+KI +++    G+ VIEIG G G 
Sbjct: 1   MRIADKTVT-RAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D  ++  N ++++  D LK D     + F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLIPILADTLARFDN-VQVVNQDILKADLQTQIQAFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
            PI+++ANLPY I T +L + I +      +    ++ QKEV +RI+A  N+  YG 
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIP---FAEFVVMIQKEVADRISAMPNTKAYGS 171


>gi|119719407|ref|YP_919902.1| ribosomal RNA adenine methylase transferase [Thermofilum pendens
           Hrk 5]
 gi|119524527|gb|ABL77899.1| dimethyladenosine transferase [Thermofilum pendens Hrk 5]
          Length = 270

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 127/272 (46%), Gaps = 22/272 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++  L    I  K+ +GQ+FL+D  +  +IA       G  V E+G G G+LT  L    
Sbjct: 6   VREALRS--IRYKRRLGQHFLVDDTVASRIASFVN---GEDVYEVGCGLGSLTLPLSERS 60

Query: 70  ARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           A  V   EKD+     L +++  +    ++I+  DAL++D  +     S   +++N P+N
Sbjct: 61  AY-VFCCEKDEALALFLSRELYRRGIGNVDIMVGDALRIDLSR-----SSHLVVSNTPFN 114

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I ++L+        +        L  Q+EV ER+ A+  +  YGRLSV++        +F
Sbjct: 115 ISSQLVVKLC----YDEGLLKAYLGLQREVAERLYAKPGTREYGRLSVISQLCFSIERLF 170

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK------ 242
           D+ P+ F P PKV ++ +  +P        +  +++ ++  F    + +  +L+      
Sbjct: 171 DVPPNAFLPPPKVFTSFVRLVPLRRLGAEDVRLVEEFSRRIFPYINRVVTTALRIGLGVN 230

Query: 243 RLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
           R   E+L+ ++ +  + R   ++ E+   +  
Sbjct: 231 REVAEDLVRESNVLGSRRVREINPEEVLALAR 262


>gi|311086456|gb|ADP66537.1| dimethyladenosine transferase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 220

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 111/213 (52%), Gaps = 8/213 (3%)

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIG 130
           ++IVIE DQ    +LK  S    ++L +   +AL  +F   F+     IRI  NLPYNI 
Sbjct: 7   ELIVIEIDQDLLFLLKKRS--FYSKLIVFYQNALSFNFLNLFHKKKQLIRIFGNLPYNIS 64

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T L+             + +  + QKEV ER+ +   +  YGRLS+++ +     ++ ++
Sbjct: 65  TSLIIFLFKQ---IKVIQDMNFMLQKEVAERLISTPGNKSYGRLSIISQYYCDIKILLNV 121

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
           SP  F P PKV S  I+  PH N       +  L  IT++AF  RRK LR SLK L  E 
Sbjct: 122 SPEYFRPIPKVHSVFINLKPHTNSPYFVYNVNILSAITKDAFQNRRKILRHSLKNLFSEK 181

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            L +  I +NLRAEN+S+  +C++ N L    +
Sbjct: 182 ELIKLEINSNLRAENISVSQYCKLANYLYKKSN 214


>gi|116197625|ref|XP_001224624.1| hypothetical protein CHGG_06968 [Chaetomium globosum CBS 148.51]
 gi|88178247|gb|EAQ85715.1| hypothetical protein CHGG_06968 [Chaetomium globosum CBS 148.51]
          Length = 371

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 16/205 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQ+ L +  I   I + +       V+E+G G GN+T   L    +    +E 
Sbjct: 32  FRFDKDFGQHILKNPGISDAIVDKAYLKPTDVVVEVGPGTGNITVRALDKAKKLTRAVEL 91

Query: 79  DQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +       P   +LE+I  D +K+       +     +I+N PY I + L+F 
Sbjct: 92  DPRMGAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSPLIFK 146

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P       L+FQ+E  +R+ A+     Y RLSV   +      +  +    F 
Sbjct: 147 MLAMPNPP---RVAVLMFQREFAKRLVAKPGDALYSRLSVNVNFWATCKHIMKVGKQNFK 203

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES 221
           P PKV S V       NP P    S
Sbjct: 204 PPPKVESDV------ANPYPGVRRS 222


>gi|224373783|ref|YP_002608155.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) [Nautilia profundicola AmH]
 gi|223588383|gb|ACM92119.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) [Nautilia profundicola AmH]
          Length = 219

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 102/229 (44%), Gaps = 15/229 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 VIEIG G G+LT+ LL    R+V   E D+    ILK         L +   D 
Sbjct: 2   PKTDNMVIEIGPGLGDLTEKLLEK--RRVTAYEIDKDLCEILKKKFP----NLNLKCGDV 55

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           L+   E   N      +IANLPY I T ++   +         +++ +L QKEV ++ +A
Sbjct: 56  LEFWQETLEN--EKYDLIANLPYYIATNIILKALKDKNA----KNILVLIQKEVADKFSA 109

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224
           +    +Y  L++L     K   +FDI P  F P+PKVTS+VI F    N      E   K
Sbjct: 110 KAGDKNYSSLAILAQSVAKVKKLFDIPPGAFVPAPKVTSSVILFEKFENSFD---EEFAK 166

Query: 225 ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
             + AF   RKTL+++L            G+  N+R   +    F ++ 
Sbjct: 167 FLKVAFANPRKTLKKNLSAKYKNFNPEDFGLAKNIRPHQIDGSTFFQLF 215


>gi|297526046|ref|YP_003668070.1| ribosomal RNA adenine methylase transferase [Staphylothermus
           hellenicus DSM 12710]
 gi|297254962|gb|ADI31171.1| ribosomal RNA adenine methylase transferase [Staphylothermus
           hellenicus DSM 12710]
          Length = 268

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 19/266 (7%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           IL  + + P+K + QNF+++  I+    +    L   T++EIGAG G+L+  L    ++ 
Sbjct: 19  ILRKHGVRPRKKLSQNFIVNPRIIHDFLK--HVLPNKTLLEIGAGIGSLSYYLSRKVSKY 76

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            + IE D++   I +D+ S    R  +I  +AL +D+          ++ +N PY+I + 
Sbjct: 77  SVFIEIDERLSRICRDLISP---RGILINGNALDLDWS-------VEQVFSNAPYHITSD 126

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           ++             E    +FQK+V +R+ A+  +  YGR++VLT             P
Sbjct: 127 IIVK----TARSNSVEYAVFVFQKDVVDRLLARPGTKEYGRITVLTRLVFDIERGPTYPP 182

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT-LRQSLKRLGGE-NLL 250
             F+P P+V+S +I  +         +  ++++T+  F KRRK  L+  ++ LG   + +
Sbjct: 183 VFFYPRPEVSSQMI-ILKRKRRYDEVISRVEEVTRLLFSKRRKKALKTIMRELGLSIDDV 241

Query: 251 HQAGIETNLRAENLSIEDFCRITNIL 276
            + G++   R  +LS E F ++   +
Sbjct: 242 RRLGVDEKARVYDLSPEVFLKLAEEI 267


>gi|149194711|ref|ZP_01871806.1| dimethyladenosine transferase [Caminibacter mediatlanticus TB-2]
 gi|149135134|gb|EDM23615.1| dimethyladenosine transferase [Caminibacter mediatlanticus TB-2]
          Length = 233

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 16/235 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 VIEIG G G+LT+ LL    R+V+  E D++   ILK         L +   D 
Sbjct: 2   PKSDNLVIEIGPGLGDLTEKLLEK--RQVLAYEIDRELCEILKKKFP----NLNLKCGDV 55

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           L+   E   N  +   +IANLPY I T ++   +         +++ +L QKEV ++ +A
Sbjct: 56  LEYWQESLAN--TKYDLIANLPYYIATNIILRALKDKNA----QNILVLIQKEVADKFSA 109

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224
           +     YG LS+L         +FDI P  F P+PKV S+VI F    +      E   K
Sbjct: 110 KVGDKIYGSLSILASQVANVKKLFDIPPGAFVPAPKVMSSVILFEKFKDSYN---EDFAK 166

Query: 225 ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             + AF   RKTL ++L      N   + G+   +R   +  + F ++ + L + 
Sbjct: 167 FLKIAFANPRKTLNKNLSVKYNFNP-SEFGLADTIRPHQVDADTFFQLFSALKER 220


>gi|118388069|ref|XP_001027135.1| dimethyladenosine transferase family protein [Tetrahymena
           thermophila]
 gi|89308905|gb|EAS06893.1| dimethyladenosine transferase family protein [Tetrahymena
           thermophila SB210]
          Length = 345

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 30/227 (13%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           + L++  +L  I E S       V+EIG G GNLT +LL   A+KVI +E D +    L 
Sbjct: 16  HILVNPQMLHSIVEKSAIRPTDIVLEIGPGTGNLTALLLE-KAKKVIAVEIDPRMVAELN 74

Query: 88  DIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
                SQH ++ E+IQ DA+  +F  FF++      +AN PY I + L+F  +S     P
Sbjct: 75  KRFKYSQHAHKFELIQGDAISTEFP-FFDVC-----VANTPYQISSPLVFKLLSHR---P 125

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +    L+FQ                  LSV     +K   +  +  + F P PKV S+V
Sbjct: 126 LFRHAVLMFQ------------------LSVNVQLLSKCDHLIKVGKNNFKPPPKVESSV 167

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           I   P              + +  F ++ K L    K      +L +
Sbjct: 168 IRIEPKNPAPVLNYIEWDGLLRVCFMRKNKQLSAIFKNKSVLQVLEK 214


>gi|75753575|gb|ABA26919.1| KsgA [Vibrio harveyi]
          Length = 143

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            + +  + QKEV  R+ A   S  YGRL+V+  +  K   + ++ P  F P PKV S V+
Sbjct: 6   IQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPTAFVPPPKVDSAVV 65

Query: 207 HFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENL 264
             +P+   P P   L  L+++ +E F +RRKT+R   K L    +L + G+  ++R ENL
Sbjct: 66  RLVPYEELPHPAKDLRLLERVCREGFNQRRKTVRNCYKALISAEVLEELGVNPSMRPENL 125

Query: 265 SIEDFCRITNILTDN 279
           +++ F  + N L DN
Sbjct: 126 TLQQFVAMANWLADN 140


>gi|269219262|ref|ZP_06163116.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211409|gb|EEZ77749.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 350

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 81/340 (23%), Positives = 126/340 (37%), Gaps = 80/340 (23%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVI---------- 52
           M   SH ++ + S   I P K +GQNF+ D   +++I   +G   G  V+          
Sbjct: 1   MLGASH-IRELASTLGIRPTKTLGQNFVHDAGTVRRIVREAGVRPGDVVLEVGPGLGSLT 59

Query: 53  -------------EIGAGP-GNLTQMLLTL---GARKVIVIEKD------------QQF- 82
                        EI     G L   +         ++ V   D             +  
Sbjct: 60  LALLEAGAAVCAVEIDPVLAGALESTVAARMPEAVERLAVANLDAMDVKAPSNLPIPRLL 119

Query: 83  ----------FPILKDISSQHPNRLEIIQDDA----LKVDFEKF----FNISSPIRIIAN 124
                          + +   P  ++   + A    L    E+F     N++ P R++AN
Sbjct: 120 RSEEGRAHGRAESAPETAELEPGSVDFAGETARTGRLPEKPERFVASTRNLAEPSRLVAN 179

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPYN+   +    + A    P  ++ T++ Q EV +R+ A   S  YG  S    W  +A
Sbjct: 180 LPYNVAVPIFLGLLEA---LPSIQAATVMVQAEVADRLAASPGSRTYGVPSAKASWYGEA 236

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-------------PCCLESLKKITQEAFG 231
                IS +VF+P P V S +++F  H                     E +  +   AF 
Sbjct: 237 ARGAKISRNVFWPIPNVDSALVNFKRHGALPWLPADVAGRGAFADVAREDVFAVIDAAFA 296

Query: 232 KRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSI 266
           +RRKTLR +L    G     E+LL  AGI+   R E L I
Sbjct: 297 QRRKTLRAALATWAGSAARAEDLLVFAGIDPKARGEQLGI 336


>gi|221501682|gb|EEE27446.1| riboxomal RNA adenine dimethylase domain-containing protein,
           putative [Toxoplasma gondii VEG]
          Length = 912

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 30/281 (10%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARK---- 72
             PK+ +GQNFL D NI + IA S       G+ V+E+G G G +T+ LL    R     
Sbjct: 601 FKPKQSLGQNFLSDPNISRLIATSLEDASPGGVGVVEVGPGSGAITRFLLPKFPRMSDFV 660

Query: 73  -VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRIIANLPYNIG 130
            +   E D +   +     S+    L II  D L+V +        + + +  NLP+ + 
Sbjct: 661 DLCSCETDPRAVSL-----SRASPTLNIIHGDVLQVSWPDLARERGTRLSVAGNLPFYLT 715

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           ++LL   + +     F +   +  Q E+ ER+TA+     Y RLSV+        ++  +
Sbjct: 716 SQLLCCLLDS---WRFIDQALVTIQWEMAERLTARVGERQYSRLSVVFALYGACRIVKKL 772

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPIP-----CCLESLKKITQEAFGKRRKTLRQSLKRLG 245
              VF+P PKV + ++H      P+            + +   AFG+RRK LR SLK   
Sbjct: 773 PRSVFYPVPKVDAALVHIKFRQEPLEKILCGVDPRQFRNVLHAAFGQRRKMLRSSLKP-- 830

Query: 246 GENLLHQAGIET----NLRAENLSIEDFCRITNILTDNQDI 282
              +L  +G       +LR + LS  DF  +T  +  ++D 
Sbjct: 831 ---VLPHSGAVPERFASLRPQQLSPTDFLELTEAIFPSKDA 868


>gi|301166053|emb|CBW25627.1| dimethyladenosine transferase [Bacteriovorax marinus SJ]
          Length = 267

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 123/270 (45%), Gaps = 23/270 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
             K +GQ+FL   N++  I       +   +IE+G GPG LT+ L         VIEKD+
Sbjct: 8   ADKNLGQHFLRSQNVIDSITNDFKE-EAQAIIEVGPGPGILTEFLAKHE-LPFFVIEKDK 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS----PIRIIANLPYNIGTRLLFN 136
           +F   L+         L     DAL++  E FF         I +++NLPYN+   LL +
Sbjct: 66  RFPEYLEQFIPSEAITLS----DALEIHLEDFFEQKEINNKDIWLVSNLPYNVSVPLLIS 121

Query: 137 WISADTWPPFWESLTLLFQKEVGERITA---QKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           +I A    P  + +TL+FQ+EV +++ +    K +   G L VL+      +++    P 
Sbjct: 122 FIKA----PQIKYMTLMFQREVADKVISFMNPKKNKSMGSLLVLSQTYFDVSVLCQAPPG 177

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGG----E 247
            F P PKV STV+ F    NP+      +  +   ++ F  +RK L   LK         
Sbjct: 178 AFQPPPKVDSTVVSFKRRENPVIALSEFKQFESFLRKLFQFKRKQLGSVLKSHYSPEKLA 237

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +   ++G+    RAE+ S+E    +   L 
Sbjct: 238 DAFEKSGVLRTDRAESFSLEIIQNLYKELR 267


>gi|156937848|ref|YP_001435644.1| dimethyladenosine transferase [Ignicoccus hospitalis KIN4/I]
 gi|156566832|gb|ABU82237.1| dimethyladenosine transferase [Ignicoccus hospitalis KIN4/I]
          Length = 243

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 115/248 (46%), Gaps = 25/248 (10%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            K  L+   I P K MGQNF ++  I++     S    G  VIEIGAG G LT  L  + 
Sbjct: 5   TKAKLAELGIRPSKKMGQNFTVNPKIIEFF--LSEVPSGEVVIEIGAGLGALTAPLSKV- 61

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           ++KVI IEKD +    LK ++ +    +E++  DAL++       + +P+ ++ +LPY+I
Sbjct: 62  SKKVIAIEKDLRLCNYLKSLNLE---NVEVVCGDALEL------ELDAPV-VVGSLPYSI 111

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
              LL    +   W         L QKEV ER+ A+  +  YGRL+VL     +A +   
Sbjct: 112 SGPLLAKLFTEGRWNKG----VFLLQKEVAERLVAEPGTKEYGRLTVLASLCCEARLGPV 167

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL----KRLG 245
             P  F+P P+V S  +  I          +   +     F +R K  R+ L     R  
Sbjct: 168 WGPESFYPKPEVLSRHVILIKKR----SVPKEFSEFLACVFSQRNKKARKVLPSCGARWE 223

Query: 246 GENLLHQA 253
           GE  + + 
Sbjct: 224 GEERVREL 231


>gi|322379602|ref|ZP_08053939.1| dimethyladenosine transferase [Helicobacter suis HS1]
 gi|322380213|ref|ZP_08054444.1| dimethyladenosine transferase [Helicobacter suis HS5]
 gi|321147379|gb|EFX42048.1| dimethyladenosine transferase [Helicobacter suis HS5]
 gi|321147996|gb|EFX42559.1| dimethyladenosine transferase [Helicobacter suis HS1]
          Length = 292

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 114/290 (39%), Gaps = 40/290 (13%)

Query: 25  MGQNFLLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKD 79
           +GQ+FL D + L +I +S       D I ++EIG G G+LT  LL      + ++  E D
Sbjct: 4   LGQHFLHDAHYLGQILQSIPYEHFKDWIQLVEIGVGLGDLTTRLLNKLESPKSLLAYEVD 63

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVD----------------------FEKFFNISS 117
                 L         RLE++  D ++                         E  F    
Sbjct: 64  PGLAQRLYHKLGPLSERLELVVGDVMQYKGINGADRQVCIQTADRDIRLSVSETGFLCQK 123

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           P  +++NLPY I T ++   +           + ++ Q EV ++  A  +S +YG LSVL
Sbjct: 124 PYFLVSNLPYYIATPIITRALRDALCI----GMAVMVQLEVADKFCAPVHSSNYGALSVL 179

Query: 178 TGWRT-KATMMFDISPHVFFPSPKVTSTVIHFIPH----LNPIPCCLESLKKITQEAFGK 232
                 +  ++F ++   F P PKV S  +  +             L+SL+ + +  F  
Sbjct: 180 ADSLCWQRHLLFKVNKEAFNPPPKVQSAFMRLLKKPLVERETKGWDLKSLEHLLKICFKA 239

Query: 233 RRKTLRQSLKRLGGENLLH----QAGIETNLRAENLSIEDFCRITNILTD 278
            RKTL  +LK       +        +E+ LR   L    +  +   L +
Sbjct: 240 NRKTLYNNLKGSYPIERIQAFYTAHNLESALRPHQLDPAHYASLLAFLHN 289


>gi|308062691|gb|ADO04579.1| dimethyladenosine transferase [Helicobacter pylori Cuz20]
          Length = 279

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 117/252 (46%), Gaps = 33/252 (13%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++++ +   ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL   
Sbjct: 1   MRSLEALLMVVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRY 60

Query: 70  ARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             K    E D      ++    + + P  LE+++ DAL      F     P  +I+NLPY
Sbjct: 61  PLKTY--EIDSSLCEKMRSKLKAQKKPFALELVEKDAL------FLKEEEPYFLISNLPY 112

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I TRL+ N +      P    L ++ QKEV  +  A+ +      LSVLT     AT++
Sbjct: 113 YIATRLVLNALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGDATLL 165

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFG 231
           FD+ P  F P PKV S+V   I                     +    E+L+   +  F 
Sbjct: 166 FDVPPSAFSPPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFS 225

Query: 232 KRRKTLRQSLKR 243
             RKTL  +LK+
Sbjct: 226 SPRKTLSNNLKK 237


>gi|288921307|ref|ZP_06415589.1| ribosomal RNA adenine methylase transferase [Frankia sp. EUN1f]
 gi|288347281|gb|EFC81576.1| ribosomal RNA adenine methylase transferase [Frankia sp. EUN1f]
          Length = 247

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 17/235 (7%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-----NRLEIIQDDALK 106
           +E+G G G+LT  L+      V V   D      L + ++         RL +++ D L+
Sbjct: 3   LEVGPGLGSLTLGLVAQAGAVVAVE-VDPLLAAALPETAAARLPAALAQRLHVVEADGLR 61

Query: 107 VDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
           V        +++P  + ANLPYN+   LL   +      P      ++ Q EV ER+TA 
Sbjct: 62  VRPADLPAELAAPTVLAANLPYNVAVPLLLGLLER---FPTIRRGLVMVQAEVAERLTAP 118

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLK 223
                YG  SV   W   A +   +   VF+P P V S ++ F     P         + 
Sbjct: 119 PGGRIYGVPSVKLAWYADARLAGAVPRPVFWPQPNVDSALVAFNRRPAPPGDDSARAEVF 178

Query: 224 KITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETNLRAENLSIEDFCRIT 273
            +   AF +RRK LR +L    G     E ++  AG++   R E L +E + R+ 
Sbjct: 179 ALVDAAFAQRRKMLRTALASWAGSAQRAEQIIRAAGVDPGARGETLDVEAYARVA 233


>gi|111225627|ref|YP_716421.1| dimethyladenosine transferase [Frankia alni ACN14a]
 gi|111153159|emb|CAJ64908.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) [Frankia alni ACN14a]
          Length = 274

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 103/243 (42%), Gaps = 16/243 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN- 95
           +++   +      TV+EIG G G++T  LL   A  V+ +E D      L    +     
Sbjct: 2   RRLVRLAEVGPDDTVLEIGPGLGSMTLGLLGT-AGAVVAVEVDPPLAAALPVTVAARLPA 60

Query: 96  ----RLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
               RL ++  D L++        + +P  + ANLPYNI   LL   +      P     
Sbjct: 61  EAAARLHVVLADGLRLGPADLPAGVPAPDVLAANLPYNIAVPLLLGVLER---LPSLRRG 117

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
            ++ Q EV +R+TA   S  YG  SV   W  ++     +   VF+P P V S ++ F  
Sbjct: 118 LVMVQAEVADRLTAPPGSRVYGAPSVKLAWYARSRPAGGVPRPVFWPQPNVDSGLVAFTR 177

Query: 211 HLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGEN-----LLHQAGIETNLRAENL 264
              P P  L   +      AF +RRKTLR +L    G       L   AG++   R E L
Sbjct: 178 RTPPAPAELRAEVFAAVDAAFAQRRKTLRTALVPWAGSRDAATALAEAAGVDPGARGETL 237

Query: 265 SIE 267
            +E
Sbjct: 238 DVE 240


>gi|317011563|gb|ADU85310.1| dimethyladenosine transferase [Helicobacter pylori SouthAfrica7]
          Length = 271

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVSALPPLNSLRLIEIGVGLGDLTLRLLERYPLKTY--EI 59

Query: 79  DQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      +++     + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRERLKKQKKPFELELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL       +++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVAFKFGAKDSQN---ALSVLAHAIGNVSLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLTPTLSFEEALQKGFEALEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|145611616|ref|XP_368993.2| hypothetical protein MGG_00251 [Magnaporthe oryzae 70-15]
 gi|145018882|gb|EDK03161.1| hypothetical protein MGG_00251 [Magnaporthe oryzae 70-15]
          Length = 364

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 98/239 (41%), Gaps = 42/239 (17%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              KK  GQ+ L +  I ++I + +      TV+E+G G GNL+  +L   A+K+I +E 
Sbjct: 40  FRFKKDYGQHILKNPGIAEEIVKKAYLRPTDTVLEVGPGTGNLSVKILER-AQKLIAVEL 98

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    L       P   +LE+I  D +K D   F        +I+N PY I + L+F 
Sbjct: 99  DPRMGAELTKRVQGKPEQRKLEVILGDVIKADLPPF------DVLISNTPYQISSPLVFK 152

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            ++    P     + L+FQ+E   R+TA+     Y RL                      
Sbjct: 153 MLALPNPP---RCMVLMFQREFSSRLTARPGEALYSRL---------------------- 187

Query: 197 PSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
               V S+V+   P           E    + +  F ++ KTL  S   LG + +L  A
Sbjct: 188 ----VESSVVRIEPKLGRERPNVSWEEWDGMLRVCFNRKNKTLHASF--LGVKEVLAMA 240


>gi|242309135|ref|ZP_04808290.1| dimethyladenosine transferase [Helicobacter pullorum MIT 98-5489]
 gi|239524176|gb|EEQ64042.1| dimethyladenosine transferase [Helicobacter pullorum MIT 98-5489]
          Length = 242

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 38  KIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--P 94
           +I +S         +IEIGAG G+LT  LL LG   +   E D++  P LK+   +    
Sbjct: 4   QIVQSIPKEALDLELIEIGAGLGDLTNKLLGLG--NITAYEVDEELLPYLKERFKKALES 61

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
            +LE+   D +++          P  +I+NLPY I T L+   I      P  +   ++ 
Sbjct: 62  KQLELKIGDVMEIWKGNSLR-DKPYFLISNLPYYIATLLVIKAIKD----PLCKGCVVMT 116

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           QKEV  +  A +N   +  LSVLT    +A ++F++ P  F P PKVTS V     +   
Sbjct: 117 QKEVALKFCASENQSDFSALSVLTQSVGEAKLLFEVPPIAFVPQPKVTSAVFLIQKNQIL 176

Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQAGIETNLRAENLSIEDFC 270
               LE+L+ + + +F   RKT+  +L +   +     +L    I  N R   +    + 
Sbjct: 177 PSDFLEALEGLLKISFNAPRKTIFNNLSKNYSKQKVLEVLEDLQITPNKRPHEIDTATYH 236

Query: 271 RITNIL 276
           R+  IL
Sbjct: 237 RLLKIL 242


>gi|328699748|ref|XP_003241033.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 221

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 14/200 (7%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              S++ ++  YK+   K + QNFL++  ++ +I  S+GS     V E+G GPGN+T+ +
Sbjct: 11  PLPSIRDLIKLYKLRAMKELSQNFLMEPRLISRIVRSAGSFKDCEVCEVGPGPGNITRSI 70

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---------S 116
           +     +V++IEKD++F P L+ ++   P  LE+I  D +  + E+ FN           
Sbjct: 71  IQNMPSRVLIIEKDKRFTPSLELLAESSPVPLELIFGDVMNFNLEQMFNEDNKMEWEDKC 130

Query: 117 SPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
             I +I NLP+N+ T L+  W+ A       W      +TL FQKEV ER+ A   +   
Sbjct: 131 PQIHLIGNLPFNVSTPLIIRWLKAISERKSAWRYGRVRMTLTFQKEVAERMAAPIMTRER 190

Query: 172 GRLSVLTGWRTKATMMFDIS 191
            RLSV+     +    F+I 
Sbjct: 191 SRLSVMCQNWCRVEHKFNIP 210


>gi|308183524|ref|YP_003927651.1| dimethyladenosine transferase [Helicobacter pylori PeCan4]
 gi|308065709|gb|ADO07601.1| dimethyladenosine transferase [Helicobacter pylori PeCan4]
          Length = 271

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSNLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMVQKEVALKFCAKDSQN---ALSVLVHAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKESLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|21228641|ref|NP_634563.1| dimethyladenosine transferase [Methanosarcina mazei Go1]
 gi|20907141|gb|AAM32235.1| Dimethyladenosine transferase [Methanosarcina mazei Go1]
          Length = 209

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 25/217 (11%)

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           +I +E D     +L D      N +EII  DALKVDF +F       ++++NLPY+I + 
Sbjct: 1   MIAVELDPALVSVLHDRFDAAEN-IEIIAGDALKVDFPEF------DKVVSNLPYSISSE 53

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           + F  +        ++   L++Q E   R+ +      Y RL++ T +   A+++  +  
Sbjct: 54  ITFKLLRHK-----FKLGVLMYQYEFAVRMVSPPGCKDYSRLTIDTCYFADASIVMKVPK 108

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLK-KITQEAFGKRRKTLRQSLKRLGGENLLH 251
             F P+P+V S VI  IP   P     E+   +     F +RRK LR ++  L   +LL 
Sbjct: 109 GAFQPAPEVDSAVIKLIPRPAPFEVRDETFFLQFVAAVFSQRRKKLRNAI--LNTSSLLK 166

Query: 252 QAGIET----------NLRAENLSIEDFCRITNILTD 278
              I+           N RAE+L+ E+   + N++ D
Sbjct: 167 IPDIKEIVSQLPEDFMNKRAEDLTPEELASVANMIFD 203


>gi|332674195|gb|AEE71012.1| dimethyladenosine transferase [Helicobacter pylori 83]
          Length = 271

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 113/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I ++   L+ + ++EIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++      + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRSKLKVQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P+ F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVAFKFCAKDSQN---ALSVLTQAIGNATLLFDVPPNAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKDPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|315585815|gb|ADU40196.1| dimethyladenosine transferase [Helicobacter pylori 35A]
          Length = 271

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I ++   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRSKLKAQKKPFTLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQVPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|229083358|ref|ZP_04215712.1| Dimethyladenosine transferase [Bacillus cereus Rock3-44]
 gi|228699951|gb|EEL52582.1| Dimethyladenosine transferase [Bacillus cereus Rock3-44]
          Length = 185

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 14/179 (7%)

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           F     + ++ANLPY + T +LF  +             ++ QKEVG+R+ A+  +  YG
Sbjct: 9   FEEGQDVMVVANLPYYVTTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGTKDYG 65

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAF 230
            LS+   + T+   +  +   VF P P V S VI  +    PI      +   ++ + +F
Sbjct: 66  SLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAVIRILKRPQPIVEVTDEKFFFEVVRASF 125

Query: 231 GKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            +RRKTL  +L              E +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 126 AQRRKTLMNNLSNNLNGFPKDKELLERILTEVGIDPKRRGETLSIEEFAVLSNALVSHK 184


>gi|323445795|gb|EGB02231.1| hypothetical protein AURANDRAFT_35437 [Aureococcus anophagefferens]
          Length = 192

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 12/185 (6%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
            S + +   K +GQNFL +  I+  I E +      +V+EIG G GNLT  LL   A+K+
Sbjct: 18  ASSHLLAANKDLGQNFLKNPAIVDAIVERAKLQPTDSVLEIGPGTGNLTVKLLAQ-AKKL 76

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
             +E D++    +       P  +RLE++  D LKV    F         +ANLPYNI +
Sbjct: 77  TCVEFDRRMVREVAKRVENDPRKHRLEMVHGDVLKVALPYF------DVCVANLPYNISS 130

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
             LF  ++     P + S  ++FQ+E  +R++A+     Y RLSV T    K T +  + 
Sbjct: 131 PFLFKLLAHR---PHFRSAVIMFQEEFAQRLSAKPGDALYCRLSVNTQLLAKVTQLIKVG 187

Query: 192 PHVFF 196
            + F 
Sbjct: 188 RNNFR 192


>gi|317014800|gb|ADU82236.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Helicobacter pylori Gambia94/24]
          Length = 271

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 123/280 (43%), Gaps = 43/280 (15%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVGALPPLNSLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFP--ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D         +  + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSGLCEKMRARLRAEKKPFNLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEIIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKRL--------GGENLLHQAGIETNLRAENLSIEDFCRI 272
           LK+            + L      T++RA    ++D+ ++
Sbjct: 227 LKKSVSYKEKLDKVLDFLALENQPTSVRASE--VKDYLKL 264


>gi|297380589|gb|ADI35476.1| dimethyladenosine transferase [Helicobacter pylori v225d]
          Length = 271

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I ++   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRSKLKAQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQVRFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|261840104|gb|ACX99869.1| dimethyladenosine transferase [Helicobacter pylori 52]
          Length = 271

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D       +    + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKTRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGSATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|217034556|ref|ZP_03439965.1| hypothetical protein HP9810_874g13 [Helicobacter pylori 98-10]
 gi|216942976|gb|EEC22459.1| hypothetical protein HP9810_874g13 [Helicobacter pylori 98-10]
          Length = 271

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRSKLKAQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|221062011|ref|XP_002262575.1| dimethyladenosine transferase [Plasmodium knowlesi strain H]
 gi|193811725|emb|CAQ42453.1| dimethyladenosine transferase, putative [Plasmodium knowlesi strain
           H]
          Length = 519

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 13/234 (5%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  +IE+G G G +++ L     +K+  +E D +   +L           + I DD L++
Sbjct: 270 GKGIIELGCGLGQISKFLFA-KYKKMTAVEIDSRALSVLSRTMPG----FDFIHDDVLQI 324

Query: 108 DFEKFFNISS-PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
           +++         + +I NLP+ I +++LF  +       + E   +  Q EVG+RI ++ 
Sbjct: 325 NYKDLSKSKGTKLTVIGNLPFYITSQILFCLLDYH---HYIEQAIVTIQYEVGQRIISKP 381

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
           N  +Y  LS+L    T   ++F I    F+P PKV + V+  I   + + C L  LK+I 
Sbjct: 382 NEKNYSILSILFNLYTNPYLLFKIPSSAFYPVPKVEAAVMKIIFKHSNLNCNLLFLKEIL 441

Query: 227 QEAFGKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           + +F +RRK L+ SLKRL      E  L       +LR + L+   F  +TN L
Sbjct: 442 RHSFQQRRKKLKSSLKRLLAKYSTEGNLQLPSSFCDLRPQQLTPLQFVELTNFL 495



 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI 49
           L+T +   +  PK+ +GQN+L D NI++K+  +       
Sbjct: 140 LRTKIPSREFKPKRSLGQNYLKDENIIQKMISAIELDADE 179


>gi|262277389|ref|ZP_06055182.1| dimethyladenosine transferase [alpha proteobacterium HIMB114]
 gi|262224492|gb|EEY74951.1| dimethyladenosine transferase [alpha proteobacterium HIMB114]
          Length = 255

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 128/251 (50%), Gaps = 10/251 (3%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           + KK  GQNFL++ N+ ++I +     +   ++E+G+G   LT  ++    +K   +E D
Sbjct: 1   MAKKKFGQNFLINKNLCEEILKYEKINNN-NILEVGSGNLALTTKIINKNPKKFFSLEID 59

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                  K+          I + DAL ++    FN      II+NLP+NI ++LL  W+ 
Sbjct: 60  DDLIEKHKNSLISKY----IYKGDALNINELDLFN-KDKFSIISNLPFNISSKLLIKWLR 114

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                   +S+TL+FQKE+ +RI A++N   YGR++VL       + + +++   F+P P
Sbjct: 115 LQNDYKCIQSMTLMFQKELADRILAKENEKKYGRITVLVNAFFALSKIVEVNKKDFYPRP 174

Query: 200 KVTSTVIHF--IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
           KV +TVI F  +          + L+KIT   F +RRK     +K++  +  + +  ++ 
Sbjct: 175 KVDATVIKFSSLKKNKIKKENFQKLEKITFSFFNERRKKNINKIKKIFSKEQIRKEELDK 234

Query: 258 --NLRAENLSI 266
             +LR ENL+ 
Sbjct: 235 YFSLRPENLNP 245


>gi|317010201|gb|ADU80781.1| dimethyladenosine transferase [Helicobacter pylori India7]
          Length = 271

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRSKLKAQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLVQVLFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|15612387|ref|NP_224040.1| dimethyladenosine transferase [Helicobacter pylori J99]
 gi|27151619|sp|Q9ZJI7|RSMA_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|4155935|gb|AAD06902.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacter pylori J99]
          Length = 271

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 125/280 (44%), Gaps = 43/280 (15%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL+D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLMDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFP--ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D         +  + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSNLCEKMRARLRAEKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKRL--------GGENLLHQAGIETNLRAENLSIEDFCRI 272
           LK+            + L      T++RA    ++D+ ++
Sbjct: 227 LKKSVSYKEKLDKVLDFLALENQPTSVRASE--VKDYLKL 264


>gi|317182633|dbj|BAJ60417.1| dimethyladenosine transferase [Helicobacter pylori F57]
          Length = 271

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + ++EIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRSKLKAQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|189910634|ref|YP_001962189.1| dimethyladenosine transferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775310|gb|ABZ93611.1| Dimethyladenosine transferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
          Length = 292

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 121/294 (41%), Gaps = 37/294 (12%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL--DGITVI-EIGAGPGNLTQM 64
             +++      I  +K  GQNFL+D NI++ I   +  L  +G   + EIG G G LT  
Sbjct: 9   SQIQSFFEEKGIRAQKKFGQNFLIDQNIVEYIVNVAKPLFSEGDVTLAEIGIGLGTLTYP 68

Query: 65  LLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRII 122
           +L L  ++  + E D  +  + K +I  + P+ + +   DAL    E  F+I    + + 
Sbjct: 69  ILCLE-KETDLFEIDHAYIQLAKDEILPKFPHAI-LHAGDAL----ENLFHIYPKKVFVF 122

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPY++ T ++   I        ++    + QKE  ER+           LSV      
Sbjct: 123 GNLPYHLTTEIINTLIINCRH---FQGGIFMVQKEFAERLV-----KETSSLSVFLSAFC 174

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHL--------NPIPCCLESLKKITQEAFGKRR 234
           +   +  +  + FFP PK+ S ++   P                +E   ++ +  F  +R
Sbjct: 175 EIKFLKTVHKNCFFPIPKIHSALLLLTPKQKVGNNQWSPQSNEGVEIWSRMLRTLFWGKR 234

Query: 235 KTLRQSLKRLGGEN----------LLHQAGIETNLRAENLSIEDFCRITNILTD 278
           K ++ SL+     N           L ++ I    R E L+ E F  +   L D
Sbjct: 235 KQIQVSLRESPFSNDPMFRDALGEALLRSQIPPTKRPEELNREQFLNLGQHLLD 288


>gi|188528194|ref|YP_001910881.1| dimethyladenosine transferase [Helicobacter pylori Shi470]
 gi|226732587|sp|B2UVG9|RSMA_HELPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|188144434|gb|ACD48851.1| dimethyladenosine transferase [Helicobacter pylori Shi470]
 gi|308064183|gb|ADO06070.1| dimethyladenosine transferase [Helicobacter pylori Sat464]
          Length = 271

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I ++   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLIEIGVGLGDLTLKLLDHYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRSKLKAQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCAKDSQN---ALSVLTQAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|261838704|gb|ACX98470.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter
           pylori 51]
          Length = 271

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRSKLKAQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQAIGSATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|108563781|ref|YP_628097.1| dimethyladenosine transferase [Helicobacter pylori HPAG1]
 gi|118600871|sp|Q1CRJ9|RSMA_HELPH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|107837554|gb|ABF85423.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter
           pylori HPAG1]
          Length = 271

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I ++   L+ + ++EIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVDALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++      + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRSKLKVQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHAIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKESLKEKALASLAQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|34556519|ref|NP_906334.1| dimethyladenosine transferase [Wolinella succinogenes DSM 1740]
 gi|34482233|emb|CAE09234.1| PUTATIVE DIMETHYLADENOSINE TRANSFERASE 16S RRNA DIMETHYLASEEC 2.1.1
           [Wolinella succinogenes]
          Length = 239

 Score =  168 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 15/232 (6%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVD 108
           V+E+G G G+LT  LL  G   V+  E D    P L+    +     R EI   D ++  
Sbjct: 3   VVEVGPGLGDLTNKLL--GFWDVLAFEVDTDLRPHLEKRFQKELSIGRFEIRFGDVMEEW 60

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
            EK   I  P  +++NLPY + T ++   +      P   SL ++ QKEV E+  A+   
Sbjct: 61  REKRSLIPRPYVLVSNLPYYVATAIILKALKD----PMCHSLVVMVQKEVAEKFCARSGE 116

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228
             +  LSV+T    ++ ++F++ P  F P+PKVTS V   + H        E L+++ + 
Sbjct: 117 SDFSALSVITESYGESELLFEVPPQAFEPAPKVTSAVFRVVKH---HGEVAEGLEELLRL 173

Query: 229 AFGKRRKTLRQSLKRLGGENLLHQA----GIETNLRAENLSIEDFCRITNIL 276
           AF   RK + ++L      + L +A     ++   RA  L    + R+  IL
Sbjct: 174 AFSAPRKKVLKNLASGYETSRLKEAFGALNLKEEARAHELETSHYHRLLKIL 225


>gi|317178134|dbj|BAJ55923.1| dimethyladenosine transferase [Helicobacter pylori F16]
          Length = 271

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRSKLKAQKKPFGLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLTQVIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|222622078|gb|EEE56210.1| hypothetical protein OsJ_05183 [Oryza sativa Japonica Group]
          Length = 314

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 118/256 (46%), Gaps = 40/256 (15%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            +++++ S  + +P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL 
Sbjct: 59  STIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLD 118

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSP 118
            GA  V  +EKD+    ++ D       +L+II++D  K +    F         +    
Sbjct: 119 AGA-TVFAVEKDKHMATLVNDRFGST-EQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKY 176

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVL 177
            ++++NLP+N+ T ++   +        +  + LL Q E   R   A   +P Y  ++V 
Sbjct: 177 AKVVSNLPFNVSTEVVKLLL---PMGDVFSVMVLLLQDETALRFADASIQTPEYRPINVF 233

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             + ++    F +    FFP PKV S                         AF  +RK L
Sbjct: 234 VNFYSEPEYKFKVERTNFFPQPKVNS-------------------------AFNGKRKML 268

Query: 238 RQSLKRLGGENLLHQA 253
           R+SL+ L   + +  A
Sbjct: 269 RKSLQHLCSSSEIEAA 284


>gi|254779942|ref|YP_003058049.1| dimethyladenosine transferase [Helicobacter pylori B38]
 gi|254001855|emb|CAX30105.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase) [Helicobacter
           pylori B38]
          Length = 271

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 125/284 (44%), Gaps = 43/284 (15%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSNLCEKMRSKLKAQKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKRL--------GGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           LK+            + L      T++RA    I+D  ++   L
Sbjct: 227 LKKSVSYKEKLDKVLDFLALENQPTSVRASE--IKDHLKLLEYL 268


>gi|217032121|ref|ZP_03437621.1| hypothetical protein HPB128_16g81 [Helicobacter pylori B128]
 gi|298735609|ref|YP_003728134.1| dimethyladenosine transferase [Helicobacter pylori B8]
 gi|216946269|gb|EEC24877.1| hypothetical protein HPB128_16g81 [Helicobacter pylori B128]
 gi|298354798|emb|CBI65670.1| dimethyladenosine transferase [Helicobacter pylori B8]
          Length = 271

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSNLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|156095981|ref|XP_001614025.1| dimethyladenosine transferase [Plasmodium vivax SaI-1]
 gi|148802899|gb|EDL44298.1| dimethyladenosine transferase, putative [Plasmodium vivax]
          Length = 522

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 13/234 (5%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  +IE+G G G +++ L     +K+  +E D +   +L           + I DD L++
Sbjct: 273 GKGIIELGCGLGQISKFLFA-KYKKMTAVEIDSRALSVLSRTMPG----FDFIHDDVLQI 327

Query: 108 DFEKFFNISS-PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
           +++      +  + +I NLP+ I +++LF  +       + E   +  Q EVG+RI ++ 
Sbjct: 328 NYKDLSESKATKLTVIGNLPFYITSQILFCLLDYH---HYIEQAIVTIQYEVGQRIVSKV 384

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
           N   Y  LS+L    T   ++F I    F+P PKV + V+  I   + + C L  LK+I 
Sbjct: 385 NEKSYSILSILFNLYTSPYLLFKIPSSAFYPVPKVEAAVMKIIFKQSSLNCNLLFLKEIL 444

Query: 227 QEAFGKRRKTLRQSLKRLGGE-NLLHQAGIETN---LRAENLSIEDFCRITNIL 276
           + +F +RRK L+ SLK L  + +   +  +  +   LR + L+   F  +TN L
Sbjct: 445 RHSFQQRRKKLKSSLKPLLAKYSTTKELQLPPSVCHLRPQQLTPPQFVELTNFL 498



 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDG 48
           L+T +   +  PK+ +GQN+L D NI++K+  +      
Sbjct: 141 LRTKIPSREFKPKRSLGQNYLKDENIIQKMVSAIELGAD 179


>gi|86742643|ref|YP_483043.1| dimethyladenosine transferase [Frankia sp. CcI3]
 gi|86569505|gb|ABD13314.1| dimethyladenosine transferase [Frankia sp. CcI3]
          Length = 251

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 101/240 (42%), Gaps = 16/240 (6%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-----KDISSQH 93
           +   +G     TV+EIG G G++T  L+      V V   D+     L       + +  
Sbjct: 1   MVRLAGVGPDDTVLEIGPGLGSMTLGLVEAAKAVVAVE-VDRPLAAALPVTVAARLPADV 59

Query: 94  PNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             RL ++  D L+V       ++++P  + ANLPYNI   LL          P      +
Sbjct: 60  AERLRVVAADGLRVTLADLPADVAAPGVLAANLPYNIAVPLLL---GLLERLPSLRRGLV 116

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + Q EV +R+TA   S  YG  SV   W   A     +   VF+P P V S ++ F    
Sbjct: 117 MVQAEVADRLTAPPGSRVYGAPSVKLAWYAHARPAGAVPRPVFWPQPNVDSGLVAFARRP 176

Query: 213 NPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSI 266
            P P  L + +      AF +RRKTLR +L    G      +L   A ++   R E L I
Sbjct: 177 LPGPARLRADVFAAIDAAFAQRRKTLRTALAPWAGSPAAAGDLARAAEVDPGARGETLDI 236


>gi|308185189|ref|YP_003929322.1| dimethyladenosine transferase [Helicobacter pylori SJM180]
 gi|308061109|gb|ADO03005.1| dimethyladenosine transferase [Helicobacter pylori SJM180]
          Length = 279

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 117/252 (46%), Gaps = 33/252 (13%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +++  +   ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL   
Sbjct: 1   MRSFEALLMVVAKKSLGQHFLTDESFLDRIINALPPLNSLRLIEIGVGLGDLTLKLLDRY 60

Query: 70  ARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             K    E D      ++    + + P +LE+++ DAL      F     P  +I+NLPY
Sbjct: 61  PLKTY--EIDSSLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPY 112

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            I TRL+ N +      P    L ++ QKEV  +  A+ +      LSVL      AT++
Sbjct: 113 YIATRLVLNALKD----PKCRGLLVMTQKEVALKFCAKGSQN---ALSVLAHTIGDATLL 165

Query: 188 FDISPHVFFPSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFG 231
           FD+ P  F PSPKV S+V   I                     +    E+L+   +  F 
Sbjct: 166 FDVPPSAFSPSPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFS 225

Query: 232 KRRKTLRQSLKR 243
             RKTL  +LK+
Sbjct: 226 SPRKTLSNNLKK 237


>gi|317013195|gb|ADU83803.1| dimethyladenosine transferase [Helicobacter pylori Lithuania75]
          Length = 271

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 111/243 (45%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P +LE+++ DAL      F     P  +I+NLPY I TRL  N
Sbjct: 60  DSNLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLALN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|48477458|ref|YP_023164.1| dimethyladenosine transferase [Picrophilus torridus DSM 9790]
 gi|48430106|gb|AAT42971.1| dimethyladenosine transferase [Picrophilus torridus DSM 9790]
          Length = 239

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 27/258 (10%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +   +  GQ FL +LNI K          G  V+EIG G G LT +++      + V+E 
Sbjct: 1   MKFSRKYGQVFLKNLNIAKIEVNLLNLSPGERVLEIGPGHGILTSIIMEKNVN-LTVVEP 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +F+    +I  + P  L  I++  L +      N  +  +II N+PYNI ++++F   
Sbjct: 60  DHRFY---NEIILRFPG-LNAIKNSFLDL------NPGAYDKIIGNIPYNISSQIIFKLY 109

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             D     ++   L+ Q+E  ER+ A   + +Y RLS  +  R     + D+S   F+P 
Sbjct: 110 DFD-----FKLALLMVQREFAERLVASPGNKNYSRLSASSKLRFDIKKVMDVSRKNFYPV 164

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           P+V S++I    +   IPC  +    I + AF  +RK +    K   G            
Sbjct: 165 PEVDSSIIIIKKNNKKIPCNPDD---IIKMAFSMKRKKISSIFKNYDGPL--------KY 213

Query: 259 LRAENLSIEDFCRITNIL 276
            R  +LS EDF  +   L
Sbjct: 214 KRPGDLSPEDFIDLCCYL 231


>gi|296241774|ref|YP_003649261.1| ribosomal RNA adenine methylase transferase [Thermosphaera
           aggregans DSM 11486]
 gi|296094358|gb|ADG90309.1| ribosomal RNA adenine methylase transferase [Thermosphaera
           aggregans DSM 11486]
          Length = 249

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 21/267 (7%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +    I P K + QNF+++  ++  I            IEIG G G LT  L+    R +
Sbjct: 1   MKRNGIRPSKKLSQNFVVNPRLITSI---LSLTSNEDTIEIGCGIGTLTIFLVNR-VRSL 56

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             IE D++   I+ +I      R   ++ DAL         +  P ++++NLPY+I + +
Sbjct: 57  ACIEYDERMIKIVSNIVR--SPRFIPVKGDALTT------GVGRP-QVVSNLPYHITSDI 107

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L      ++         L  QKEVGER+ A+  +  YGRL+V+        +     P 
Sbjct: 108 LIMIARDNS----ISKAVLTLQKEVGERLVAKAGTESYGRLTVIAQLLFNIRITGVYPPS 163

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR--LGGENLLH 251
            F P PKV S+++     +      +E ++ +T+  F +RR+  R+  +        +L 
Sbjct: 164 SFIPRPKVESSLVLLE-RIRDYDKVVEKVEHVTRALFSQRRRNARRVAESRLNISTEVLT 222

Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278
           +  I ++ R   L  E F  +   L +
Sbjct: 223 RI-IPSDKRVFELEPEVFLALAEELAN 248


>gi|317181111|dbj|BAJ58897.1| dimethyladenosine transferase [Helicobacter pylori F32]
          Length = 271

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 111/243 (45%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSNLCEKMRSKLKAQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLIQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|307638086|gb|ADN80536.1| Dimethyl adenosine transferase [Helicobacter pylori 908]
 gi|325996687|gb|ADZ52092.1| Dimethyladenosine transferase [Helicobacter pylori 2018]
 gi|325998279|gb|ADZ50487.1| Dimethyladenosine transferase [Helicobacter pylori 2017]
          Length = 271

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/280 (28%), Positives = 126/280 (45%), Gaps = 43/280 (15%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVGALSPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSHLCEKMRARLKAEKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           PSPKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PSPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKRL--------GGENLLHQAGIETNLRAENLSIEDFCRI 272
           LK+            + L      T++RA    I+D+ ++
Sbjct: 227 LKKSVSYKEKLDKVLDFLALENQPTSVRASE--IKDYLKL 264


>gi|221120384|ref|XP_002166686.1| PREDICTED: similar to Probable dimethyladenosine transferase [Hydra
           magnipapillata]
          Length = 298

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 51/249 (20%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K   + T +    I  K   GQ+ L +  I+  I + +      TV+E+G G GN++  +
Sbjct: 8   KKTRVHTQVKTEGIQFKHEFGQHILKNPLIVNAIIDKAAIKSTDTVLEVGPGTGNMSVKI 67

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   A+K+I  E D +    ++      P  N+L +I  D LK +   F         +A
Sbjct: 68  LE-KAKKLIACELDPRMASEIQKRVQGSPEANKLHLIVGDVLKSELPYF------DCCVA 120

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           NLPY I +  +F  +      PF+                                    
Sbjct: 121 NLPYQISSPFVFKLL---LHRPFFR----------------------------------- 142

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
               F +  + F P PKV S+V+   P   P P   +    + + AF ++ KTL      
Sbjct: 143 ----FLVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLAACFSS 198

Query: 244 LGGENLLHQ 252
               ++L +
Sbjct: 199 KAVIDMLEK 207


>gi|210135592|ref|YP_002302031.1| dimethyladenosine transferase [Helicobacter pylori P12]
 gi|226732585|sp|B6JNS3|RSMA_HELP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|210133560|gb|ACJ08551.1| 16S rRNA (adenosine-n6,n6)-dimethyltransferase [Helicobacter pylori
           P12]
          Length = 271

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSNLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +   + +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCTKDSQN---ALSVLVHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLTQVPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|15646040|ref|NP_208222.1| dimethyladenosine transferase [Helicobacter pylori 26695]
 gi|27151553|sp|O25972|RSMA_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|2314603|gb|AAD08470.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase (ksgA)
           [Helicobacter pylori 26695]
          Length = 271

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + ++EIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLVEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSHLCEKMRSKLKAQKKPFKLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                   P    L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F 
Sbjct: 114 AFKD----PKCRGLLVMTQKEVALKFCAKDSQN---ALSVLAHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFEMLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|229170892|ref|ZP_04298495.1| Dimethyladenosine transferase [Bacillus cereus MM3]
 gi|228612558|gb|EEK69777.1| Dimethyladenosine transferase [Bacillus cereus MM3]
          Length = 183

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 14/183 (7%)

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
           F + F     + ++ANLPY I T +LF  +             ++ QKEVG+R+ A+  +
Sbjct: 2   FSEQFEEGQDVMVVANLPYYITTPILFKLLEEKLP---VRGFVVMMQKEVGDRLAAKPGT 58

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKIT 226
             YG LS+   + T+   +  +   VF P P V S +I  +    P+    +     ++ 
Sbjct: 59  KEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVV 118

Query: 227 QEAFGKRRKTLRQSLKRLGG---------ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           + +F +RRKTL  +L              + +L + GI+   R E LSIE+F  ++N L 
Sbjct: 119 RASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 178

Query: 278 DNQ 280
            ++
Sbjct: 179 LHK 181


>gi|317179606|dbj|BAJ57394.1| dimethyladenosine transferase [Helicobacter pylori F30]
          Length = 271

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 111/243 (45%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRSKLKAQKKPFALELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +   + +      LSVLT     AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMAQKEVALKFCTKDSQN---ALSVLTQAIGSATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKDPLKEKALASLLQAPFFEEALQKGFEALEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|218189952|gb|EEC72379.1| hypothetical protein OsI_05650 [Oryza sativa Indica Group]
          Length = 603

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 118/256 (46%), Gaps = 40/256 (15%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            +++++ S  + +P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL 
Sbjct: 59  STIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLD 118

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---------NISSP 118
            GA  V  +EKD+    ++ D       +L+II++D  K +    F         +    
Sbjct: 119 AGA-TVFAVEKDKHMATLVNDRFGST-EQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKY 176

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVL 177
            ++++NLP+N+ T ++   +        +  + LL Q E   R   A   +P Y  ++V 
Sbjct: 177 AKVVSNLPFNVSTEVVKLLL---PMGDVFSVMVLLLQDETALRFADASIQTPEYRPINVF 233

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             + ++    F +    FFP PKV S                         AF  +RK L
Sbjct: 234 VNFYSEPEYKFKVERTNFFPQPKVNS-------------------------AFNGKRKML 268

Query: 238 RQSLKRLGGENLLHQA 253
           R+SL+ L   + +  A
Sbjct: 269 RKSLQHLCSSSEIEAA 284


>gi|156539746|ref|XP_001600767.1| PREDICTED: similar to dimethyladenosine transferase [Nasonia
           vitripennis]
          Length = 262

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 17/210 (8%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
            + +++ I+  Y++   K + QNFL++  +  KI +S G +    V+E+G GPG +T+ +
Sbjct: 8   PTPTIRDIIKLYRLSAIKQLSQNFLMNEALTDKIVKSVGKIYNSQVLEVGPGPGGITRSI 67

Query: 66  LTLGARKVIVIEKDQQFFPIL---KDISSQHPNRLEIIQDDALKVDFEKFF--------- 113
           L    +K+IV+EKDQ+F PIL   + I S     + +I +D + ++ +  F         
Sbjct: 68  LKKNPKKLIVVEKDQRFRPILDLMESIVSASDVDMTLIYNDIMSINTKDVFSFKDKKEWN 127

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQKEVGERITAQKNS 168
           +    I I+ NLP++I T L+  W+ A     + W      +TL FQKEV ER+ A    
Sbjct: 128 DECPNIFIVGNLPFSISTALIIKWLHAISKQKEAWSHGRVRMTLTFQKEVAERLVADVMG 187

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
               RLSV+    T   + F I        
Sbjct: 188 NQRCRLSVMAQTWTLPKLQFIIPGKSQVKR 217


>gi|208435299|ref|YP_002266965.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter
           pylori G27]
 gi|226732586|sp|B5Z950|RSMA_HELPG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|208433228|gb|ACI28099.1| 16S rRNA (adenosine-N6,N6-)-dimethyltransferase [Helicobacter
           pylori G27]
          Length = 271

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKDI--SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      ++    + + P +LE+++ DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSNLCEKMRARLKAQKKPFQLELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +      P    L ++ QKEV  +   + +      LSVL      AT++FD+ P  F 
Sbjct: 114 ALKD----PKCRGLLVMTQKEVALKFCTKDSQN---ALSVLVHTIGNATLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           P PKV S+V   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PPPKVFSSVFEVIKEPLKEKALASLLQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|305663450|ref|YP_003859738.1| ribosomal RNA adenine methylase transferase [Ignisphaera aggregans
           DSM 17230]
 gi|304378019|gb|ADM27858.1| ribosomal RNA adenine methylase transferase [Ignisphaera aggregans
           DSM 17230]
          Length = 288

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/282 (26%), Positives = 128/282 (45%), Gaps = 23/282 (8%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG----SLDGITVIEIGAGPGNLTQML 65
           ++  L  Y I  KK + Q  LL+   L+KIA             +VIEIG+GPG LT  +
Sbjct: 16  VREKLRVYGIKLKKRLSQVILLNEKTLEKIARMLKELSIIHRFSSVIEIGSGPGTLTLYV 75

Query: 66  LTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
                   +I IE D++F  IL++I     N ++II  DA+     +  ++      I N
Sbjct: 76  AKECTNLYIIAIEIDKRFSAILREIQEYFWN-VDIIIGDAI-----QLIDVIRSNVAIGN 129

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           LPY+I + +L             +   +  QK+VG +I ++  S  YG++S+L       
Sbjct: 130 LPYHITSDILIEI------AKHIDIALITVQKDVGMKIISKPGSKSYGKISILLQLLFDI 183

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
             +  I    F P PKV S+++  +         +E ++++T+  F  RRK + ++LKR 
Sbjct: 184 KYVGGIPSKFFRPKPKVDSSIL-LLVRKRIYDKTIERIEEMTKCLFSYRRKHVYKALKRC 242

Query: 245 ----GGENLLHQAGIETNL-RAENLSIEDFCRITNILTDNQD 281
                 + +L          R   LS +D  ++ +I  + ++
Sbjct: 243 IDLEYVDKMLSYMEQNLWRKRVFQLSPKDIEKLVHIYVELKN 284


>gi|18390036|gb|AAL68827.1|AF462611_2 23S ribosomal RNA methyltransferase ErmML [Micrococcus luteus]
          Length = 281

 Score =  164 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 108/262 (41%), Gaps = 24/262 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D   + +++   G   G  ++EIG G G LT+ L  LG R +  +E D +
Sbjct: 8   RHEHGQNFLTDHTTIDRLSRLVGDSTG-PIVEIGPGQGRLTRELQKLG-RSLTAVEIDSR 65

Query: 82  FFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               L   S     + + ++  D L          ++P  ++ N+P+++ T +L   +  
Sbjct: 66  LADRLASASQFREQKHVTVVNADFLHWPLP-----TTPYVVVGNVPFHLTTAILRRLLHD 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
             W      + LL Q EV  R      S     ++         ++   +    F P+P 
Sbjct: 121 GAW----TQVVLLVQWEVARRRAGIGGS---SMMTAQWWPWIDFSLHGRVPRSAFKPAPS 173

Query: 201 VTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQ-------SLKRLGGENLLH 251
           V   ++      +P+  P   ES ++   + F  R + + +       SL + G   LL 
Sbjct: 174 VDGGLLEMTRRPDPLLSPDARESYRQFVHDVFTSRGRGIGEILANVSSSLGKRGALQLLK 233

Query: 252 QAGIETNLRAENLSIEDFCRIT 273
             GI ++   ++LS E + R+ 
Sbjct: 234 SEGIRSSSLPKDLSAEQWARLF 255


>gi|331087257|ref|ZP_08336327.1| hypothetical protein HMPREF0987_02630 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408943|gb|EGG88404.1| hypothetical protein HMPREF0987_02630 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 211

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 9/159 (5%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           T+ N  +++  +L  Y    +K  GQNFL+D ++L KI  S+       V+EIG G G +
Sbjct: 5   TLGNPQNTI-AVLQKYNFSFQKKFGQNFLIDTHVLDKIIRSAEITKDDFVLEIGPGIGTM 63

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---NISSP 118
           TQ L    AR+V+ +E D+   PIL+D  S + N + +I +D LK+D  K     N   P
Sbjct: 64  TQYLAC-AAREVVAVEIDKALIPILEDTLSSYDN-VTVINEDVLKLDIVKLAQERNGGKP 121

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
           I+++ANLPY I T ++     +       +S+T++ QK 
Sbjct: 122 IKVVANLPYYITTPIIMGLFESHVP---VQSITVMVQKR 157


>gi|581699|emb|CAA55770.1| lmrB [Streptomyces lincolnensis]
 gi|159796252|gb|ABX00620.1| LmrB [Streptomyces lincolnensis]
          Length = 279

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 23/257 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ +GQNFL+D +I+K I  ++   +G  ++++GAG G LT  L  LG R V  +E D +
Sbjct: 8   RQELGQNFLVDPDIIKLIRRAAERTEG-PIVDLGAGDGALTLPLSRLG-RPVTAVELDPR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               +K +S++ P  ++++ +D L+           P  ++ N+P+++ T  +   + A 
Sbjct: 66  ---RVKRLSARAPENVKVVGEDILRFRLPTV-----PHTVVGNIPFHVTTATMRRILVA- 116

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W S  L+ Q EV  R            ++  +      +++  +    F P+P V
Sbjct: 117 ---PAWVSAVLVVQWEVARRRAGIGGC---SLVTAESWPWFDFSVLKRVPRFAFRPAPSV 170

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGI 255
              ++       P+       +   ++ F  R   LR+ L+R+G              G+
Sbjct: 171 DGGILVIERRPEPLVRERREYQDFVRQVFTGRGHGLREILQRIGRVQDSDLSAWFRAHGV 230

Query: 256 ETNLRAENLSIEDFCRI 272
                 ++L+ E +  +
Sbjct: 231 SPQALPKDLTAEQWASL 247


>gi|3800832|gb|AAC69327.1| rRNA methyltransferase PikR2 [Streptomyces venezuelae]
          Length = 322

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 105/260 (40%), Gaps = 23/260 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +  +GQNFL+D +++ +I        G  ++EIG G G LT  L   G R +  +E D +
Sbjct: 9   RHELGQNFLVDRSVIDEIDGLVARTKG-PILEIGPGDGALTLPLSRHG-RPITAVELDGR 66

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L    ++ P  + ++  D L+    +     +P  ++ N+P+++ T ++   + A 
Sbjct: 67  RAQRL---GARTPGHVTVVHHDFLQYPLPR-----NPHVVVGNVPFHLTTAIMRRLLDAQ 118

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                W +  LL Q EV  R      S     L+       +  +   +    F P P V
Sbjct: 119 ----HWHTAVLLVQWEVARRRAGVGGSTL---LTAGWAPWYEFDLHSRVPARAFRPMPGV 171

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGI 255
              V+       P+   +++ +   ++ F  +   L++ L+R G          L +  I
Sbjct: 172 DGGVLAIRRRSAPLVGQVKTYQDFVRQVFTGKGNGLKEILRRTGRISQRDLATWLRRNEI 231

Query: 256 ETNLRAENLSIEDFCRITNI 275
             +   ++L    +  +  +
Sbjct: 232 SPHALPKDLKPGQWASLWEL 251


>gi|167470555|ref|ZP_02335259.1| dimethyladenosine transferase [Yersinia pestis FV-1]
          Length = 160

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 14/172 (8%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +   + G  V+EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
           + +       + VIE D+     L     Q  ++L I Q DA+KV+F +       P+R+
Sbjct: 53  EPVAAR-MDHMTVIELDRDLAARLASH-PQLKDKLTIHQQDAMKVNFSELSEQAGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  NS  YGR
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIRDMHFMLQKEVVRRLVAGPNSKTYGR 159


>gi|73487002|gb|AAZ76618.1| Erm(38)go [Mycobacterium goodii]
          Length = 377

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 100/267 (37%), Gaps = 29/267 (10%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H+    +  +GQNFL D  ++  I E      G  +IEIGAG G LT  L  L  R +  
Sbjct: 5   HHG---RHELGQNFLSDRRVIADIVEIVSHTTG-PIIEIGAGDGALTVPLQGL-VRPLTA 59

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D +    L   +++     EI+  D L+          SP  ++ NLP+++ T +L 
Sbjct: 60  IEVDARRAHRLAQRTAKST---EIVVADFLRHPLP-----HSPHVVVGNLPFHLTTAILR 111

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF--DISPH 193
             +      P W +  L+ Q EV  R  A   +       +   W           I   
Sbjct: 112 RLL----HGPGWTTAVLVVQWEVARRRAAVGGATM-----MTAQWWPWFEFALAQKIPAS 162

Query: 194 VFFPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLG---GEN 248
            F P P V + ++       P+         + +    F  R + + Q L+RL      N
Sbjct: 163 SFRPRPAVDAGLLTITRRNRPLVDSADRARYQALVHRVFTGRGRGMAQILRRLPTPVPRN 222

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNI 275
            L   G+  N     LS   +  +   
Sbjct: 223 WLRANGVAPNALPRQLSAAQWAALHEA 249


>gi|224750|prf||1112175A transferase,N-Me
          Length = 370

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 105/271 (38%), Gaps = 40/271 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL D   + +IAE++     + V+E G G G LT+ L    AR+V   E D +
Sbjct: 36  RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPGEGLLTRELADR-ARQVTSYEIDPR 94

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++  S HPN +E++  D L  +         P   +  +PY I + ++   + A 
Sbjct: 95  LAKSLREKLSGHPN-IEVVNADFLTAEPP-----PEPFAFVGAIPYGITSAIVDWCLEA- 147

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P  E+ T++ Q E   + T       + RL+V+T    +   +            KV
Sbjct: 148 ---PTIETATMVTQLEFARKRTGDYG--RWSRLTVMTWPLFEWEFV-----------EKV 191

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN- 258
            S ++       P+     LE  + + +  F      ++ SL R      +  A      
Sbjct: 192 DSAIMRLRRRAEPLLEGAALERYESMVELCFTGVGGNIQASLLRKYPRRRVEAAFDHAGV 251

Query: 259 --------LRAENLSIEDFCRITNILTDNQD 281
                   +R E      + R+   L    +
Sbjct: 252 GGGAVVAYVRPE-----QWLRLFERLDQKNE 277


>gi|109946738|ref|YP_663966.1| dimethyladenosine transferase [Helicobacter acinonychis str.
           Sheeba]
 gi|122973457|sp|Q17ZF9|RSMA_HELAH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|109713959|emb|CAJ98967.1| dimethyladenosine transferase [Helicobacter acinonychis str.
           Sheeba]
          Length = 271

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 108/243 (44%), Gaps = 33/243 (13%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2   VVAKKSLGQHFLTDESFLDRIVSALPPLNSLRLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79  DQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D      +++     + P  LE+ + DAL      F     P  +I+NLPY I TRL+ N
Sbjct: 60  DSSLCEKMRERLKKQKKPFELELAEKDAL------FLKEEEPYFLISNLPYYIATRLVLN 113

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                   P    L ++ QKEV  +   + +      LSVL       T++FD+ P  F 
Sbjct: 114 AFKD----PKCRGLLVMTQKEVALKFCTKDSQN---ALSVLAHAIGNVTLLFDVPPSAFS 166

Query: 197 PSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           PSPKV S++   I                     +    E+L+   +  F   RKTL  +
Sbjct: 167 PSPKVFSSMFEVIKEPLKEKALASLIPTLSFEEALQKGFETLEDFLKACFSSPRKTLSNN 226

Query: 241 LKR 243
           LK+
Sbjct: 227 LKK 229


>gi|30698221|ref|NP_201437.2| ribosomal RNA adenine dimethylase family protein [Arabidopsis
           thaliana]
 gi|21539437|gb|AAM53271.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana]
 gi|31711838|gb|AAP68275.1| At5g66360 [Arabidopsis thaliana]
 gi|332010820|gb|AED98203.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
           thaliana]
          Length = 352

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 97/241 (40%), Gaps = 40/241 (16%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
            H  +   K  GQ+ L +  IL  I  SS      TV+EIG G GNLT  LL   A+ V+
Sbjct: 57  EHDGLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLE-AAQNVV 115

Query: 75  VIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            +E D++   IL+   S H   ++L IIQ D LK DF  F        ++AN+PYNI + 
Sbjct: 116 AVELDKRMVEILRKRVSDHGFADKLTIIQKDVLKTDFPHF------DLVVANIPYNISSP 169

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           L+   +        + S TLL QKE   R+ A      + RL+V                
Sbjct: 170 LVAKLVYGSN---TFRSATLLLQKEFSRRLLANPGDSDFNRLAVN--------------- 211

Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
                        +   P        ++     T+  FGK+ KTL    ++      L  
Sbjct: 212 -------------VKITPKEIIPDVNVQEWLAFTRTCFGKKNKTLGSMFRQKKKVMELQS 258

Query: 253 A 253
            
Sbjct: 259 L 259


>gi|168702403|ref|ZP_02734680.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246]
          Length = 261

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 19/240 (7%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L  +   + + PK  +GQNFL+DLN+L  I  ++       V+E+G G G+LT  L    
Sbjct: 26  LHRLFEAHGLSPKSKLGQNFLIDLNLLDLIVRTAELDKSDAVLEVGTGTGSLTAKLAD-P 84

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL------------KVDFEKFFNISS 117
           A  V+ +E D+   P+ K+I     N +  +  DAL              D        +
Sbjct: 85  AGVVVTVEVDRSIQPVAKEIVGGRSN-VRFVFGDALAKKSELNPDMLSTWDAAAKEVGCT 143

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
             +++ANLPY I T L+ N +      P  E + ++ Q E+ ER+ A  N+  Y  LSVL
Sbjct: 144 RKKLVANLPYVIATPLISNLLIGH---PEIERMVVMVQWEIAERMKAVPNTKDYNALSVL 200

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK 235
                    +  ++P  F P PKV S ++   P+         +   +   ++ +  RRK
Sbjct: 201 VQSVADVETVRKVAPTNFHPRPKVDSAIVLIKPNAEKRAKVGDVMKFRIFLRDLYVHRRK 260


>gi|116328998|ref|YP_798718.1| dimethyladenosine transferase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116121742|gb|ABJ79785.1| Dimethyladenosine transferase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 301

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 120/299 (40%), Gaps = 44/299 (14%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLT 62
           K   ++  L      P K  GQNFL+D N ++ I              ++EIG G G ++
Sbjct: 10  KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILNCLSSDLLSTIDRILEIGPGLGAIS 69

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             LL    + V + E D  +   L++   +     EI + +AL    E   N +    + 
Sbjct: 70  HGLLDFQ-KPVTLFEIDPVYAHWLREYLPE----FEIREGNALDFLHEYSQNST---YLF 121

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPY I + L    +S+       +    L QKE  +RI+++ +S  +  LS    W  
Sbjct: 122 GNLPYYISSELT---LSSVKNLKELKGAAFLVQKEFAKRISSEPSSIQF-YLSAYGNW-- 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             ++  D+    F+P P V S+++ +   P        + +L+ + + AF  +RK L  S
Sbjct: 176 --SLKKDVKAGAFYPRPNVDSSILEYKSCPVFEKQSGFI-ALECLCRTAFWGKRKKLTSS 232

Query: 241 LKRLGGENL----------------------LHQAGIETNLRAENLSIEDFCRITNILT 277
           L+     +L                      L  AGI+ N R E L   DF      L+
Sbjct: 233 LRNAPIASLPVEVVSSENFSEEQFRNESVQSLENAGIDLNKRPEELRTADFHEAAQSLS 291


>gi|16082608|ref|NP_394755.1| rRNA dimethyladenosine transferase [Thermoplasma acidophilum DSM
           1728]
          Length = 239

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 28/262 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K MGQ FL    I +   +  G  +  TV+EIG G G LT++L+  G  K+  +EKD+ 
Sbjct: 4   SKRMGQVFLQSRRIAEYEVDLLG--EPGTVLEIGPGHGVLTKILVERG-FKITAVEKDRY 60

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
            F  L+ + +     L +I  D L +         S   II N+PY+I + ++F     +
Sbjct: 61  IFGELQSLRAA---NLNLINMDFLDM------APGSYDYIIGNIPYSISSPIVFKLYEFE 111

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +    ++ QKE  E+I          RL V    R    +   +S   F P P+V
Sbjct: 112 -----FRRSVIMVQKEFAEKIAFP---DDMSRLYVNAHVRYNVELKRYVSRKNFNPQPEV 163

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S ++         P  LE L  +  + F K+RK L      +  E+L        + R 
Sbjct: 164 DSAILVLEKKKYEEPYPLEFLDGVLVQMFSKKRKKLSNIF-DICPEDL-------ADKRP 215

Query: 262 ENLSIEDFCRITNILTDNQDIA 283
            NL++ +   +  +L D+   A
Sbjct: 216 SNLTVSEILGLARLLFDSGSSA 237


>gi|73993434|ref|XP_535250.2| PREDICTED: similar to Probable dimethyladenosine transferase
           (S-adenosylmethionine-6-N,N-adenosyl(rRNA)
           dimethyltransferase) (18S rRNA dimethylase) (HUSSY-05)
           [Canis familiaris]
          Length = 201

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 12/186 (6%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           + + S   +     +GQ+ L +  ++  I + +       V+E+G G GN+T  LL    
Sbjct: 20  RELKSAGGLTFNTGIGQHILKNPLVVNSIIDKAALGPTDVVLEVGPGTGNMTVELLE-KV 78

Query: 71  RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +KVI  E D +            P  ++L+++  D LK D   F         +ANLPY 
Sbjct: 79  KKVIARELDPRLVAEPHKRVQGTPLASKLQVLVGDVLKTDLPFF------DACVANLPYQ 132

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I +  +F  +      PF+    L+FQ+E   R+ A      Y RLS+      +   + 
Sbjct: 133 ISSPFVFKLL---LHRPFFRCAVLMFQREFALRLVAMPGDKLYCRLSINIQLLARVDHLM 189

Query: 189 DISPHV 194
            +  + 
Sbjct: 190 KVGKNN 195


>gi|115630|sp|P13079|CARB_STRTH RecName: Full=rRNA methyltransferase; AltName:
           Full=Carbomycin-resistance protein
 gi|99022|pir||A26512 carB protein - Streptomyces sp
 gi|153200|gb|AAC32026.1| carbomycin resistance protein [Streptomyces thermotolerans]
          Length = 299

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 23/263 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL+D   +++    +    G  V+E+GAG G +T+ L  L  R+V+  E D+ 
Sbjct: 49  RRVHGQNFLVDRETVQRFVRFADPDPGEVVLEVGAGNGAITRELARLC-RRVVAYEIDRH 107

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           F   L++ +++ P R+E++  D LK    K      P  ++ N+P+     ++   ++A 
Sbjct: 108 FADRLREATAEDP-RIEVVAGDFLKTSQPKV-----PFSVVGNIPFGNTADIVDWCLNAR 161

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                  + TL+ Q E   + T       + RL+V T    +  M   IS   F P P V
Sbjct: 162 R----LRTTTLVTQLEYARKRTG--GYRRWSRLTVATWPEVEWRMGERISRRWFRPVPAV 215

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            S V+       P   P  +   + + +  F  +  +L  SL+R      +  AG     
Sbjct: 216 DSAVLRLERRPVPLIPPGLMHDFRDLVETGFTGKGGSLDASLRRRFPARRV-AAGFR-RA 273

Query: 260 RAEN------LSIEDFCRITNIL 276
           R E       ++   +  +   L
Sbjct: 274 RLEQGVVVAYVTPGQWITLFEEL 296


>gi|116330394|ref|YP_800112.1| dimethyladenosine transferase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116124083|gb|ABJ75354.1| Dimethyladenosine transferase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 301

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 120/299 (40%), Gaps = 44/299 (14%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLT 62
           K   ++  L      P K  GQNFL+D N ++ I              ++EIG G G ++
Sbjct: 10  KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILNCLSSDLLSTIDRILEIGPGLGAIS 69

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             LL    + V + E D  +   L++   +     EI + +AL    E   N +    + 
Sbjct: 70  HGLLDFQ-KPVTLFEIDPVYAHWLREYLPE----FEIREGNALDFLHEYSQNST---YLF 121

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPY I + L    +S+       +    L QKE  +RI+++ +S  +  LS    W  
Sbjct: 122 GNLPYYISSELT---LSSVKNLKELKGAAFLVQKEFAKRISSEPSSIQF-YLSAYGNW-- 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFI--PHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             ++  D+    F+P P V S+++ +   P        + +L+ + + AF  +RK L  S
Sbjct: 176 --SLKKDVKAGAFYPRPNVDSSILEYKSCPVFEKQSGFI-ALECLCRTAFWGKRKKLTSS 232

Query: 241 LKRLGGENL----------------------LHQAGIETNLRAENLSIEDFCRITNILT 277
           L+     +L                      L  AGI+ N R E L   DF      L+
Sbjct: 233 LRNAPIASLPVEVVSSENFSEEQFRNESVQSLENAGIDLNKRPEELRTADFYEAAQSLS 291


>gi|119558|sp|P09891|ERMA_ARTS3 RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|80586|pir||A24026 erythromycin resistance protein - Arthrobacter sp
 gi|142204|gb|AAA22075.1| erythromycin resistance (ermA) protein [Arthrobacter sp.]
 gi|53794569|gb|AAU93796.1| ribosomal RNA methyltransferase [Aeromicrobium erythreum]
          Length = 340

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 112/269 (41%), Gaps = 20/269 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ +GQNFL D   +++IA+++       V+E G G G LT+ L    A +V   E DQ+
Sbjct: 32  RRVLGQNFLRDPATIRRIADAADVDPDGLVVEAGPGEGLLTRELARR-AGRVRTYELDQR 90

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L    +Q  + +E++  D L     +      P + +  +PY I + ++   ++A 
Sbjct: 91  LARRLSTDLAQETS-IEVVHADFLTAPHPE-----EPFQFVGAIPYGITSAIVDWCLTA- 143

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P   S TL+ Q+E   + T       +  L+V T    +   +  +   +F P P+V
Sbjct: 144 ---PTLTSATLVTQQEFARKRTGDYG--RWTALTVTTWPTFEWQYVAKVDRTLFTPVPRV 198

Query: 202 TSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLK----RLGGENLLHQAG 254
            S ++       P+            + +  F  +  +L +SL     R   ++   +A 
Sbjct: 199 HSAIMRLRRRPQPLLRDAAARSRFADMVEIGFVGKGGSLYRSLTREWPRSKVDSAFARAD 258

Query: 255 IETNLRAENLSIEDFCRITNILTDNQDIA 283
           +  +     +  + +  +  +L  ++  A
Sbjct: 259 VHHDEIVAFVHPDQWITLFQLLDGSRGGA 287


>gi|218884716|ref|YP_002429098.1| Probable dimethyladenosine transferase [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766332|gb|ACL11731.1| Probable dimethyladenosine transferase [Desulfurococcus
           kamchatkensis 1221n]
          Length = 278

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 117/273 (42%), Gaps = 23/273 (8%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +IL  + + P++ + QNF++D  +++         +     EIG G G LT  L  +  R
Sbjct: 21  SILREHGLRPRRKLSQNFIVDPRLIRDFISHVNHAETT---EIGCGLGTLTIPLSRVVPR 77

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            +I IE D++   I     +        I  DA K             +++ N+PY++ +
Sbjct: 78  -LICIEIDEKLLGIAVKNLNTSNTLF--INADATKYTVFS-------RQVVGNIPYHVTS 127

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            +L +   ++      E +    QK+V ER+ A+  S  YGR+++L        +     
Sbjct: 128 NILVSIARSNN----VERVVFTLQKDVAERLVAKPGSKQYGRITILLNTLFNIEITGIYG 183

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----- 246
           P  F+P PKV   +I            + +L+K+T+  F +RR+   + L +  G     
Sbjct: 184 PSSFYPEPKVGHAIITLTRRR-VFNQDVFALEKLTRLLFTQRRRIALRVLTKSLGIGEDS 242

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           E  ++   +  + R   +S E +  +   L +N
Sbjct: 243 EIYMYARELLGDKRVYEVSGEVYATLARRLREN 275


>gi|225023525|ref|ZP_03712717.1| hypothetical protein EIKCOROL_00383 [Eikenella corrodens ATCC
           23834]
 gi|224943698|gb|EEG24907.1| hypothetical protein EIKCOROL_00383 [Eikenella corrodens ATCC
           23834]
          Length = 134

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 2/132 (1%)

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
           +  + QKEV ER+ A+  S  +GRLSV+  +  +   + D+ P  F P+PKV S V+  I
Sbjct: 1   MHFMLQKEVVERMVAEPGSNDFGRLSVMLQYFFEMEKLLDVPPEAFSPAPKVDSAVVRLI 60

Query: 210 PHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE 267
           P    I      E    + ++AF +RRKT+R +LK L  +N L  AGI    RAE+++ E
Sbjct: 61  PAKYRIGQAQDFEQFAALVKQAFHQRRKTIRNNLKGLADDNDLQAAGISPQERAEHIAPE 120

Query: 268 DFCRITNILTDN 279
            +  + N+L   
Sbjct: 121 KYVALANLLAQK 132


>gi|221122621|ref|XP_002168090.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 479

 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 9/159 (5%)

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            N+L +I  D LK +   F         +ANLPY I +  +F  +      PF+    L+
Sbjct: 3   ANKLHLIVGDVLKSELPYF------DCCVANLPYQISSPFVFKLL---LHRPFFRCAVLM 53

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213
           FQ+E  +R+ A+     Y RLS+ T    +   +  +  + F P PKV S+V+   P   
Sbjct: 54  FQREFAQRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNP 113

Query: 214 PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           P P   +    + + AF ++ KTL          ++L +
Sbjct: 114 PPPINFQEWDGLVRIAFVRKNKTLAACFSSKAVIDMLEK 152


>gi|73487015|gb|AAZ76628.1| Erm(40)wo [Mycobacterium wolinskyi]
          Length = 246

 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 101/257 (39%), Gaps = 21/257 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D  ++  I E      G  ++EIGAG G LT  L  LG R +  IE D +
Sbjct: 8   RHEFGQNFLCDRRVVADIVEIISRTTG-PIVEIGAGDGALTVPLQWLG-RPLTAIEIDSR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   +S      E++  D L+    +     +P  I+ NLP+++ T +L   +   
Sbjct: 66  RAERLAGHTSA-----EVVATDFLRFRLPR-----TPHVIVGNLPFHLTTAMLRRLL--- 112

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W    LL Q EV  R      +     ++       +  +   +S + F P P V
Sbjct: 113 -HGPGWTDAVLLVQWEVARRRAGVGGATM---MTAQWWPWFEFGLARKVSANAFRPRPTV 168

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            + ++      +P          + +  + F  R + + Q + R    + L   GI    
Sbjct: 169 DAGLLTITRRAHPMIDAADRRRYQALVHQVFTGRGRGIAQIIGRRVPRHWLRDNGINPAA 228

Query: 260 RAENLSIEDFCRITNIL 276
             ++L+   +  +   +
Sbjct: 229 LPKDLTATQWAALFAAV 245


>gi|148686526|gb|EDL18473.1| RIKEN cDNA 1500031M22, isoform CRA_a [Mus musculus]
 gi|148686527|gb|EDL18474.1| RIKEN cDNA 1500031M22, isoform CRA_a [Mus musculus]
          Length = 236

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 16/195 (8%)

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           +     ++L+++  D LK D   F         +ANLPY I +  +F  +      PF+ 
Sbjct: 22  VFRPLASKLQVLVGDVLKSDLPFF------DACVANLPYQISSPFVFKLL---LHRPFFR 72

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
              L+FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV S+V+  
Sbjct: 73  CAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRI 132

Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAEN 263
            P   P P   +    + +  F ++ KTL  + K    + LL +       ++  +  E+
Sbjct: 133 EPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVIPED 192

Query: 264 LSIEDFCRITNILTD 278
            SI D  +I  ILT 
Sbjct: 193 FSIAD--KIQQILTS 205


>gi|73487007|gb|AAZ76622.1| Erm(39)ho [Mycobacterium houstonense]
          Length = 246

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 103/262 (39%), Gaps = 24/262 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H+    +   GQNFL D  ++  IA+      G  ++E+GAG G LT  L  L  R +  
Sbjct: 5   HHG---RHETGQNFLCDRRVVADIADIVARTTG-PIVEVGAGDGALTLPLQRLN-RPLTA 59

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE D++    L + +S      E++  D L+    +     +P  ++ NLP+++ T +L 
Sbjct: 60  IEIDRRRATRLAERTSA-----EVVSADFLRYRLPR-----TPHVVVGNLPFHLTTAILR 109

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             + A    P W    L+ Q EV  R  A   +     ++       +  +   IS   F
Sbjct: 110 RLLHA----PGWTDAVLVVQWEVARRRAAVGGATM---MTAQWWPWFEFGLARKISAESF 162

Query: 196 FPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P P V + ++       P+      +  + +    F  R + L Q L+       L   
Sbjct: 163 RPRPSVDAGLLTITRRTEPLVDWADRQRYQSLVHRVFTGRGRGLGQILRPHVDRRWLGAN 222

Query: 254 GIETNLRAENLSIEDFCRITNI 275
            +  +     L+   +  + + 
Sbjct: 223 RVHPHALPRELTAGQWAALFDA 244


>gi|325177054|emb|CCA21009.1| dimethyladenosine transferase putative [Albugo laibachii Nc14]
          Length = 323

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 37/294 (12%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSG-------------SLDGITVIEIGAGPGNLTQMLL 66
             K+++GQ+ L+  +++  I +++                  I V+EIG+G GNLT  LL
Sbjct: 15  RLKRHLGQHLLVSNDVIASIIKAADFPSLLLQKAGNQTEERRIRVLEIGSGTGNLTAALL 74

Query: 67  TLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPI--RI 121
            +    +V  +E D      L+D        ++L++  +   K+     F+ S  +   +
Sbjct: 75  DVDPTIQVHGVECDASMVKSLEDRFPSQLRTSQLQLHVNRIEKLRLSDLFSSSQGLIDAV 134

Query: 122 IANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +AN+PY + + ++   +S    +P   + + LL Q+E  +R+ A  ++ +YGRL+V T  
Sbjct: 135 VANIPYQLSSLIIARLVSYLHKYPGSVKCIILLLQEEFAQRMLATPHNQNYGRLAVNTSL 194

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTL 237
                 +  + P VF P P+V S VI   PH       P  L     + +  F ++ KTL
Sbjct: 195 VGHVDALLKVGPEVFIPRPQVDSRVIKVTPHFPRFIRDPSFLREFDALLRICFLRKNKTL 254

Query: 238 RQSLKRLGGEN--------------LLHQAGIETNLRAENLSIEDFCRITNILT 277
           R  L     E                L +  +  N RA   S +DF R+   L 
Sbjct: 255 RALLTSKSMERKLVGASDWKKNVLLALKECDLIKN-RAVQTSKDDFLRLFGRLE 307


>gi|255513974|gb|EET90238.1| ribosomal RNA adenine methylase transferase [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 277

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 20/236 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           I PK+ +GQNFL       KIAE  +G  DG   +E+GAG G LT+ L  + A  V+ +E
Sbjct: 19  IRPKRKLGQNFLKSP----KIAEFEAGYADGKNALELGAGLGVLTRKLCEV-ANSVVAVE 73

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           KD+  F  LK   + H   L++I  D   +D E F        +++N+PYNI +++L   
Sbjct: 74  KDKALFDRLKMNLAFH--NLKLINADFFDLDPEVF---KKCDIMVSNIPYNISSKVLMWL 128

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                         L  Q+E  + I A+  S  Y +LSV +    +   +  +S   F+P
Sbjct: 129 SEHKMQ------AVLCLQREFVDHIIARPGSRKYSKLSVFSQLNFRIYPIKRVSRLSFYP 182

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           +PKV S++I   P    I        K+       ++K +  +L    GE  + +A
Sbjct: 183 APKVDSSIILLDPKDAKIDG---QAMKVISLLMEHKKKRIGNALADSSGELGISKA 235


>gi|313621079|gb|EFR92166.1| dimethyladenosine transferase [Listeria innocua FSL S4-378]
          Length = 162

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 10/155 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N + ++ +D LK D      E+F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSNYDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
           Y + T ++   +  +      +S+T + QKEV +R
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADR 162


>gi|294868|gb|AAA26492.1| N-6-amino adenine-N-methyl transferase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 370

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 104/271 (38%), Gaps = 40/271 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL D   + +IAE++     + V+E G   G LT+ L    AR+V   E D +
Sbjct: 36  RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPVEGLLTRELADR-ARQVTSYEIDPR 94

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++  S HPN +E++  D L  +         P   +  +PY I + ++   + A 
Sbjct: 95  LAKSLREKLSGHPN-IEVVNADFLTAEPP-----PEPFAFVGAIPYGITSAIVDWCLEA- 147

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P  E+ T++ Q E   + T       + RL+V+T    +   +            KV
Sbjct: 148 ---PTIETATMVTQLEFARKRTGDYG--RWSRLTVMTWPLFEWEFV-----------EKV 191

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN- 258
            S ++       P+     LE  + + +  F      ++ SL R      +  A      
Sbjct: 192 DSAIMRLRRRAEPLLEGAALERYESMVELCFTGVGGNIQASLLRKYPRRRVEAAFDHAGV 251

Query: 259 --------LRAENLSIEDFCRITNILTDNQD 281
                   +R E      + R+   L    +
Sbjct: 252 GGGAVVAYVRPE-----QWLRLFERLDQKNE 277


>gi|238060827|ref|ZP_04605536.1| rRNA (adenine-N(6)-)-methyltransferase [Micromonospora sp. ATCC
           39149]
 gi|237882638|gb|EEP71466.1| rRNA (adenine-N(6)-)-methyltransferase [Micromonospora sp. ATCC
           39149]
          Length = 263

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 105/262 (40%), Gaps = 19/262 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + QNFL D   + +I  ++    G  ++E+GAG G LT+ L     R ++  E D  
Sbjct: 15  RRVLSQNFLADPAAVARIVGAARPAPGDLLLEVGAGRGRLTRALAARCGR-LVAYEVDPV 73

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L    +  P  + + + D L  D         P  ++ N+P+++   ++   ++AD
Sbjct: 74  AAADLAVTCAGLPG-VSLRRADFLAADAPD-----EPFAVVGNIPWSLTAAVVRWCLAAD 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                  S TLL Q E   + T       + RL+VLT       +   +    F P P+V
Sbjct: 128 R----LRSATLLTQLEYARKRTGHAG--RWSRLTVLTWPEYAWRLAGTVPRTAFRPVPRV 181

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGI 255
            + ++       P   P  L + ++  +  FG     +  SL R       +  L    +
Sbjct: 182 DAGILRLDRRAEPLLPPGDLPAYRRFVEVGFGGSGGCVAASLSRHRPRARVDAALRAVRL 241

Query: 256 ETNLRAENLSIEDFCRITNILT 277
           + +  A  +  E +  +  +L 
Sbjct: 242 DRDALAGEVWPEQWITLHRLLR 263


>gi|308448554|ref|XP_003087684.1| hypothetical protein CRE_15249 [Caenorhabditis remanei]
 gi|308253631|gb|EFO97583.1| hypothetical protein CRE_15249 [Caenorhabditis remanei]
          Length = 131

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 2/127 (1%)

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
           +  + QKEV +RITA  N+  YGRLSV+  +  K T +F++ P  F P PKVTS V    
Sbjct: 1   MHFMLQKEVVDRITASPNTKEYGRLSVMIQYFCKPTFLFEVPPGSFNPPPKVTSAVFRLE 60

Query: 210 PHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE 267
           P+          ++L ++    F +RRKTLR SLK +  E+    AG++   R E L++ 
Sbjct: 61  PYATKPIVAKSEKALARLVSHVFTQRRKTLRNSLKGMLLEDGFENAGVDPMARPETLTLA 120

Query: 268 DFCRITN 274
            F  +++
Sbjct: 121 QFVALSD 127


>gi|10640644|emb|CAC12422.1| rRNA (adenine-N6, N6-)-dimethyltransferase (DIM1, yeast) related
           protein [Thermoplasma acidophilum]
          Length = 233

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 28/258 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ FL    I +   +  G  +  TV+EIG G G LT++L+  G  K+  +EKD+  F  
Sbjct: 2   GQVFLQSRRIAEYEVDLLG--EPGTVLEIGPGHGVLTKILVERG-FKITAVEKDRYIFGE 58

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L+ + +     L +I  D L +         S   II N+PY+I + ++F     +    
Sbjct: 59  LQSLRAA---NLNLINMDFLDM------APGSYDYIIGNIPYSISSPIVFKLYEFE---- 105

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +    ++ QKE  E+I          RL V    R    +   +S   F P P+V S +
Sbjct: 106 -FRRSVIMVQKEFAEKIAFP---DDMSRLYVNAHVRYNVELKRYVSRKNFNPQPEVDSAI 161

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
           +         P  LE L  +  + F K+RK L      +  E+L        + R  NL+
Sbjct: 162 LVLEKKKYEEPYPLEFLDGVLVQMFSKKRKKLSNIF-DICPEDL-------ADKRPSNLT 213

Query: 266 IEDFCRITNILTDNQDIA 283
           + +   +  +L D+   A
Sbjct: 214 VSEILGLARLLFDSGSSA 231


>gi|38261101|ref|NP_940746.1| Erm(X) [Arcanobacterium pyogenes]
 gi|37993856|gb|AAR07014.1| Erm(X) [Arcanobacterium pyogenes]
          Length = 284

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 108/271 (39%), Gaps = 26/271 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNFL D  I+  I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHEHGQNFLTDHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAYLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +    L   +S     +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVDAKLAAKLTQETSSAA--VEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   + A    P W    LL Q EV  R  A   +     ++          +   +   
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRS 163

Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245
            F P P V   ++      +P       ++ + +    F  R + +R+ L+R G      
Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIREILRRAGLFSSRS 223

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275
             ++ LH  GI+       L   D+  +  +
Sbjct: 224 ETQSWLHSRGIDPATLPPRLHTSDWIDLFQV 254


>gi|329766403|ref|ZP_08257949.1| ribosomal RNA adenine methylase transferase [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137172|gb|EGG41462.1| ribosomal RNA adenine methylase transferase [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 235

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 109/258 (42%), Gaps = 26/258 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K +GQ+FL    I + I   +       V E+G G G LT  LL   A+KVI I+ D++
Sbjct: 4   RKRLGQHFLTSNTIAQSIVSEANISGNDIVFELGTGLGILT-PLLCEKAKKVISIDADRE 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
            +   K   S   N L +   D        F         ++NLPY+     +  W++  
Sbjct: 63  LYENAKSRFSHIDN-LTVEFGD-------GFQKQDKFSIFVSNLPYSKSKEAI-EWLAIT 113

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            +        ++ QKE  E++  +  + +   +S++  +  +     ++  + F P PKV
Sbjct: 114 PFSHGI----IMVQKEFAEKLLTKS-TKNRRSVSIIANYVFEIEKFLNVGKNNFSPPPKV 168

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S V+      +     +  L K+    F  RRKT++   K+ G E L+ +       R 
Sbjct: 169 DSVVLKITKKKSIEKDIINVLNKM----FSYRRKTIQNIFKQFGKETLMDK-------RL 217

Query: 262 ENLSIEDFCRITNILTDN 279
           ++LS ++   +   + + 
Sbjct: 218 DDLSGDEIIDLAKEILER 235


>gi|45656257|ref|YP_000343.1| dimethyladenosine transferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|294827644|ref|NP_710586.2| dimethyladenosine transferase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45599491|gb|AAS68980.1| dimethyladenosine transferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|293385487|gb|AAN47604.2| dimethyladenosine transferase [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 301

 Score =  154 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 118/301 (39%), Gaps = 48/301 (15%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLT 62
           K   ++  L      P K  GQNFL+D N ++ I +            ++EIG G G ++
Sbjct: 10  KVSEIRKFLESKSSAPLKKWGQNFLIDPNAIRSILDCLNFDLLSTIDRILEIGPGLGAIS 69

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             LL    + V + E D  +   L++   +     E+ + +AL    E          + 
Sbjct: 70  HGLLDFK-KPVTLFEIDPIYSNWLREYLPE----FELKEGNALDFLSEY---SQDSTYLF 121

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
            NLPY I + L    +++       +  T L QKE  +RI+A+ +S  +  LS    W  
Sbjct: 122 GNLPYYISSELT---LNSVKNLKGLKGATFLVQKEFAKRISAEPSSIQF-YLSAYGNW-- 175

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE----SLKKITQEAFGKRRKTLR 238
             ++  DI    F+P P V S+++    + +      E    +L+ I + AF  +RK L 
Sbjct: 176 --SLKKDIKAGAFYPKPNVDSSILE---YKSLPVFKNESGFIALECICRTAFWGKRKKLT 230

Query: 239 QSLKRLGGE----------------------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
            S +    E                        L    I+ + R E L  +DF     IL
Sbjct: 231 SSFRDAPIESLPLEVYSSENFSEKTFRTECLKALKSVNIDLDKRPEELKSKDFHEAAKIL 290

Query: 277 T 277
           +
Sbjct: 291 S 291


>gi|161528889|ref|YP_001582715.1| ribosomal RNA adenine methylase transferase [Nitrosopumilus
           maritimus SCM1]
 gi|160340190|gb|ABX13277.1| ribosomal RNA adenine methylase transferase [Nitrosopumilus
           maritimus SCM1]
          Length = 234

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 27/255 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K +GQ+FL    I + I   +       V EIG G G LT  LL   A+KVI ++ D+ 
Sbjct: 4   RKLLGQHFLNSQLIAESIVSEAKITKNDIVYEIGTGLGVLT-PLLCKKAKKVISVDADEN 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                K+  S   N L +   D  K          +    ++NLPY+  ++    W++  
Sbjct: 63  LIKKAKNTFSDIDN-LVLKSGDGFK-------KKDTFSVFVSNLPYS-KSKDAIEWLAQR 113

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           T+        ++ QKE  +++ A+  S     +S++         + +++ + F P PKV
Sbjct: 114 TFSHG----VIMVQKEFAQKLVAK--SKDRKAISIIATHAFDIEKISNVNKNNFSPPPKV 167

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S V+      +      ++L     E F  RRKT++  LK+   E+ L +       R 
Sbjct: 168 DSVVLKITKKTD----MDKTLISTINEIFSYRRKTVKNILKQFHKESDLEK-------RV 216

Query: 262 ENLSIEDFCRITNIL 276
           + L+ ++   +   +
Sbjct: 217 DTLTGDEIVNLAKQI 231


>gi|68536522|ref|YP_251227.1| 23S rRNA methyltransferase [Corynebacterium jeikeium K411]
 gi|68264121|emb|CAI37609.1| 23S rRNA methyltransferase [Corynebacterium jeikeium K411]
          Length = 284

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 100/263 (38%), Gaps = 25/263 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D  I+  I +      G  +IEIG G G LT  L  LG R +  +E D +
Sbjct: 8   RHEHGQNFLTDHKIINSIVDLVKQSSG-PIIEIGPGSGALTHPLSRLG-RPITAVEVDAK 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   ++     +E++  D L           +P  I+ N+P+++ T +L   + A 
Sbjct: 66  LAAKLTKKTASAS--VEVVHGDFLNFPLPA-----TPCVIVGNIPFHLTTAILRKLLHA- 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W    LL Q EV  R  A   +     ++          +   +    F P P V
Sbjct: 118 ---PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRSAFRPQPNV 171

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG-------GENLLHQ 252
              ++      +P       ++ + +    F  R + + + L+R G        ++ L  
Sbjct: 172 DGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRSETQSWLRS 231

Query: 253 AGIETNLRAENLSIEDFCRITNI 275
            GI+       L   D+  +  +
Sbjct: 232 RGIDPATLPPRLRTSDWIDLFQV 254


>gi|156087991|ref|XP_001611402.1| dimethyladenosine transferase [Babesia bovis T2Bo]
 gi|154798656|gb|EDO07834.1| dimethyladenosine transferase, putative [Babesia bovis]
          Length = 246

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 20/213 (9%)

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRL 133
            IE D +    L          L++I DD L+VD++         + II NLP+ I +++
Sbjct: 3   AIEIDARAISQLSRNLPD----LDVIHDDVLQVDYDAVSKAKGCKLWIIGNLPFYITSQI 58

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           LF  +         ++  +  Q EV +RI A+ N   Y  LSV+     K ++ F I  +
Sbjct: 59  LFCLVDYKR---VIDTAVVTAQWEVAQRIVARPNQFEYSILSVVLQLYAKPSLCFKIPNY 115

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            F+P PKV S VI         P C    LK+I +++F +RRK L+ SL+       L Q
Sbjct: 116 AFYPVPKVDSGVIRLEFKNKTNPECAPLVLKRILRDSFNQRRKMLKTSLRTC-----LDQ 170

Query: 253 AGIE------TNLRAENLSIEDFCRITNILTDN 279
             I        ++R + L  E F  ++  +  +
Sbjct: 171 LEIPKLPSELEDIRPQQLPPEGFVALSKWIERH 203


>gi|302348251|ref|YP_003815889.1| dimethyladenosine transferase [Acidilobus saccharovorans 345-15]
 gi|302328663|gb|ADL18858.1| dimethyladenosine transferase [Acidilobus saccharovorans 345-15]
          Length = 250

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 121/257 (47%), Gaps = 18/257 (7%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           + +GQ FL++ + +    E     +G+ V+E+G G G LT  +  + AR+V+ +E D++ 
Sbjct: 5   RDLGQRFLVNKDGVSLFLEGLSGFEGLDVLEVGPGEGQLTVSIANV-ARRVLAVEFDREL 63

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              L    ++ P  + ++  D       ++  I+    +++N P+ + + ++ N      
Sbjct: 64  AARL---VARVPYNVSVVVGD-----GARYALIARSPVLVSNTPFYLSSSIITN----AA 111

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                E + L  Q EV +R+TA+  S  YGRLSV++    +  ++  +    F P PKV 
Sbjct: 112 RNNNLELMVLGLQLEVAKRVTARPGSELYGRLSVISQAYFRTQIIGVMPSSWFKPRPKVD 171

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL-RQSLKRLGG-ENLLHQAGIETNLR 260
           + V+  +      P   E+L+K+T+  F  R K + + +L+ LG            ++ R
Sbjct: 172 AAVVRMVRIRRWDPTG-EALEKVTRCLFSYRNKLVTKAALRCLGSVPEDFKSL--PSSTR 228

Query: 261 AENLSIEDFCRITNILT 277
             +L+ E    +   L+
Sbjct: 229 VRDLAPEQLIGVAKWLS 245


>gi|213580131|ref|ZP_03361957.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 120

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKI 225
           S  YGRLSV+  +  +   + ++ P  F P PKV S V+  +PH   P P   +  L +I
Sbjct: 1   SKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRI 60

Query: 226 TQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           T EAF +RRKT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 61  TTEAFNQRRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 117


>gi|260577655|ref|ZP_05845591.1| mycinamicin-resistance protein MyrB [Corynebacterium jeikeium ATCC
           43734]
 gi|258604201|gb|EEW17442.1| mycinamicin-resistance protein MyrB [Corynebacterium jeikeium ATCC
           43734]
          Length = 284

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 100/263 (38%), Gaps = 25/263 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D  I+  I +      G  +IEIG G G LT  L  LG R +  +E D +
Sbjct: 8   RHEHGQNFLTDHKIINSIVDLVKESSG-PIIEIGPGSGALTHPLSRLG-RPITAVEVDAK 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   ++     +E++  D L           +P  I+ N+P+++ T +L   + A 
Sbjct: 66  LAAKLTKKTASAS--VEVVHGDFLNFPLPA-----TPCVIVGNIPFHLTTAILRELLHA- 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W    LL Q EV  R  A   +     ++          +   +    F P P V
Sbjct: 118 ---PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRSAFRPQPNV 171

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG-------GENLLHQ 252
              ++      +P       ++ + +    F  R + + + L+R G        ++ L  
Sbjct: 172 DGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRSETQSWLRS 231

Query: 253 AGIETNLRAENLSIEDFCRITNI 275
            GI+       L   D+  +  +
Sbjct: 232 RGIDPATLPPRLRTSDWIDLFQV 254


>gi|302543001|ref|ZP_07295343.1| dimethyladenosine transferase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460619|gb|EFL23712.1| dimethyladenosine transferase [Streptomyces himastatinicus ATCC
           53653]
          Length = 174

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 10/169 (5%)

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
               +P  ++ANLPYN+   +L N ++     P  E   ++ Q EV +R+ A   S  YG
Sbjct: 6   LPGPAPTALVANLPYNVAVPVLLNMLAR---FPTIERTLVMVQSEVADRLAAPPGSKVYG 62

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAF 230
             SV   W         I  +VF+P+P V S ++  +    P+      E +  +   AF
Sbjct: 63  VPSVKAAWYAHVKRAGAIGRNVFWPAPNVDSGLVSLVRRAEPLTTTASREEVFAVVDAAF 122

Query: 231 GKRRKTLRQSLKRL-----GGENLLHQAGIETNLRAENLSIEDFCRITN 274
            +RRKTLR +L          E  L  AGI    R E+L++EDF  I  
Sbjct: 123 AQRRKTLRAALSGWAGSAPAAEAALTAAGISPQARGESLTVEDFAAIAE 171


>gi|170291019|ref|YP_001737835.1| ribosomal RNA adenine methylase transferase [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175099|gb|ACB08152.1| ribosomal RNA adenine methylase transferase [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 243

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 126/255 (49%), Gaps = 21/255 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQ+ ++    +K IA+      G  VIE+GAG GNL++ +L+   RK+I++EKD++F 
Sbjct: 4   KLGQHMMVSRKWIKLIADLLDVR-GDEVIELGAGTGNLSEEILSRDPRKLILVEKDERFV 62

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
            IL++       R+EI++ D  ++   +        +I +N PY + ++L+     ++  
Sbjct: 63  DILREKFGG-DERVEILRADIRELLPLRV------EKIASNPPYYLSSQLIIGLARSE-- 113

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +    L  QKE  ER+ A+  +  YG LSV+     K +++  +    F P PKV S
Sbjct: 114 ---FRRAVLTLQKEFAERLIAKPGTEKYGSLSVIASLLLKVSLVSIVDRRSFNPVPKVDS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR-LGGENLLHQAGIETNLRAE 262
            ++   P  + +    + + K  +  F +R++ L+ SLK  L   + L  A      R  
Sbjct: 171 AILVIEPKQDEL---RDQILKYCKLIFSRRKRELKNSLKPVLRSVDGLPHAE----RRPY 223

Query: 263 NLSIEDFCRITNILT 277
           ++S E+   +   L+
Sbjct: 224 HMSPEEVREVIAWLS 238


>gi|206602077|gb|EDZ38559.1| Putative dimethyladenosine transferase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 256

 Score =  151 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 132/238 (55%), Gaps = 16/238 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            ++EIG G G L+  L T+ A  + ++E+D++    L+   S +   + I++ DA+++  
Sbjct: 11  RIVEIGPGKGILSGYLATMTAD-LWLVERDRRLAEPLRTTFSGNSG-VRILEADAMEL-- 66

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
             F N  SP  +++NLPYNI   L   ++++D +PP +  + L+FQ+EV +R+ A+   P
Sbjct: 67  -SFGNDRSPYILVSNLPYNISVPLYLKFLASD-FPPVF--MVLMFQREVAKRLLARTTDP 122

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229
            YG LSV+T +  +     D++P  F+P+PKV S+V+  +P       C  +   ++++ 
Sbjct: 123 DYGHLSVVTSYLAQIRKRIDLAPGAFYPAPKVHSSVLTVLPL-PVQDECTWAAISLSRKL 181

Query: 230 FGKRRKTLRQSLKRLG-GENLLH-----QAGIE-TNLRAENLSIEDFCRITNILTDNQ 280
           F  RRK+L ++L+    GE  L      Q+  +  + + ++LS EDF  +   + ++ 
Sbjct: 182 FCYRRKSLGRALRTAFPGEESLADGTFFQSETDFFSRKVDSLSPEDFQELAASIRNHH 239


>gi|207092922|ref|ZP_03240709.1| dimethyladenosine transferase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 261

 Score =  151 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 33/234 (14%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E D      ++
Sbjct: 1   HFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EIDSNLCEKMR 58

Query: 88  D--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
               + + P  LE+++ DAL      F     P  +I+NLPY I TRL+ N +      P
Sbjct: 59  SKLKAQKKPFELELVEKDAL------FLKEEEPYFLISNLPYYIATRLVLNALKD----P 108

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
               L ++ QKEV  +  A+ +      LSVL      AT++FD+ P  F P PKV S+V
Sbjct: 109 KCRGLLVMTQKEVALKFCARDSQN---ALSVLAHAIGDATLLFDVPPSAFSPPPKVFSSV 165

Query: 206 IHFIPH----------------LNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
              I                     +    E+L+   +  F   RKTL  +LK+
Sbjct: 166 FEVIKEPLKEKALASLAQAPFFEESLQKGFETLEDFLKACFSSPRKTLSNNLKK 219


>gi|290559679|gb|EFD93005.1| ribosomal RNA adenine methylase transferase [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 262

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 12/213 (5%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL D ++  KI ++S       ++EIG+G G LT+ + TL  +KV  IE D   +   + 
Sbjct: 7   FLKDESVFNKIIKASELKKDDIILEIGSGDGRLTKRIATL-VKKVYAIEIDTNLYDSART 65

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           +     + +E I  DAL ++F +  N     +II+NLPY I + +    I          
Sbjct: 66  LVEN--DNIEFINADALSIEFPENAN-----KIISNLPYAISSPITEKIIYFLNKKRDG- 117

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
              L++Q E G R+ A      Y  +SV   +      + ++S + F P P V S ++  
Sbjct: 118 FAVLMYQLEFGNRMLAFPGIRDYSMISVFAQYTCDVKHISNVSKNSFRPKPAVESIILKL 177

Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
           IP    I    ++  + T+  F  ++K L  ++
Sbjct: 178 IPKKIEID---KNFLRFTRLLFQHKKKNLYSAI 207


>gi|1171091|sp|P43433|MYRB_MICGR RecName: Full=Mycinamicin-resistance protein myrB
 gi|286054|dbj|BAA03402.1| myrB [Micromonospora griseorubida]
          Length = 311

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 107/263 (40%), Gaps = 22/263 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +  +GQNFL+D  +  +IAE   S     V+E+GAG G +T+ L+      V  +E D +
Sbjct: 21  RHELGQNFLVDRGVCTRIAEVVSSTTAHPVLELGAGDGAITRALVAAN-LPVTALELDPR 79

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   +   + + ++  D L+ DF  +     P  +++ +P++I T LL   I   
Sbjct: 80  RVRRLQRTFA---DGVTVVHGDMLRYDFGPY-----PHHVVSTVPFSITTPLLRRLIGQR 131

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
               FW +  LL Q EV  +      +     L+  +    + T++  +    F P P V
Sbjct: 132 ----FWHTAVLLVQWEVARKRAGVGGTTM---LTAASWPWYEFTLVERVPKTSFDPVPSV 184

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGI 255
              ++       P+    C+   + + +E +    + L   L+        +  L +  +
Sbjct: 185 DGGILVIERRSAPLLDDRCVGDYQNLVREVYTGPGRGLAAILRTRLPGREVDAWLRRERV 244

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
           +      +L    +  +  +  +
Sbjct: 245 DPAALPRDLKAGHWASLYRLYRE 267


>gi|14600800|ref|NP_147322.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase
           [Aeropyrum pernix K1]
 gi|27151617|sp|Q9YEM5|RSMA_AERPE RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|5104206|dbj|BAA79521.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase
           [Aeropyrum pernix K1]
          Length = 277

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/279 (22%), Positives = 110/279 (39%), Gaps = 30/279 (10%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILK---KIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           ++ +L    + P   +GQ+FL+D   +    K  E + +      +EIG G G++T    
Sbjct: 17  VREVLGLAGLRPSDRLGQHFLIDDRAVGEFLKPLEKAAAEGIREALEIGPGAGSITLPAA 76

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +  R ++ +E D +    L  ++   P R+ +I  D +          S    + +N P
Sbjct: 77  EVLDR-IVAVELDNRLASALSRLA---PARVAVITGDGV-----SHAAASQAPLVFSNTP 127

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           +N+   ++     A        +  L  Q EV  R+TA+  S  Y RLSVL      A +
Sbjct: 128 FNLSPAIV----EALAVNNRVAAAVLGVQYEVARRMTARPGSRDYSRLSVLVSLVFHAEL 183

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
              + P  ++P P+V + V+              +L+ +   AF +R K   + L+R   
Sbjct: 184 AGVVRPQAYYPRPQVLTAVVTLRRRRRWRSLYARALE-LAGCAFTQRNKKASKVLRRC-- 240

Query: 247 ENLLHQAGIET--------NLRAENLSIEDFCRITNILT 277
              L  AG           + R   L  EDF  +     
Sbjct: 241 ---LEAAGCAPPPWLDSLGDARVWMLRPEDFVGLAEACR 276


>gi|325123521|gb|ADY83044.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 160

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D  ++ KI  S     G  ++EIG G   LT  L+      + V+E
Sbjct: 13  GHKARKRFGQNFLHDQRVIAKIVRSVSPRTGDNIVEIGPGLAALTSPLIGEC-DALTVVE 71

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            D+     L +    HP RL II+ DALK DF +      P+R++ NLPYNI T LLF+ 
Sbjct: 72  LDRDLAAGLPERV-PHPERLTIIEADALKYDFSELVKDGRPLRVVGNLPYNISTPLLFHL 130

Query: 138 ISADTWPPFWESLTLLFQKEVGERIT 163
           +    +    + +  + QK +  RI 
Sbjct: 131 LE---FGSKVKDMHFMLQKVLLNRIQ 153


>gi|73486998|gb|AAZ76615.1| Erm(39)bo [Mycobacterium boenickei]
          Length = 246

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 24/264 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H+    +   GQNFL D  ++  I +      G  ++EIGAG G LT  L  L  R++  
Sbjct: 5   HHG---RHEYGQNFLCDRRVVADIVKIVSHTTG-PIVEIGAGDGALTLPLQRLN-RQLTA 59

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE         +          E++  D L+         ++P  ++ NLP+++ T  L 
Sbjct: 60  IE-----IDRXRARRLADRTSAEVVGADFLQYRLP-----TTPHVVVGNLPFHLTTAXLR 109

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
                    P W    LL Q EV  R      +     ++       + ++   +S   F
Sbjct: 110 RL----XHGPGWTDAVLLMQWEVARRXAGVGGATM---MTAQWWPWFEFSLAXKVSADAF 162

Query: 196 FPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P P V + ++       P+         + +  E F  R + L Q L+R      L   
Sbjct: 163 RPRPGVDAGLLTITRRREPLVPTADRRRYQALAHEVFTGRGRGLAQILRRHVDRRWLQAN 222

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           GI  +    +LS + +  + + + 
Sbjct: 223 GIHPSALPRDLSAQQWAALFDAVR 246


>gi|258545947|ref|ZP_05706181.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826]
 gi|258518825|gb|EEV87684.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826]
          Length = 136

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 2/128 (1%)

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
           +  + QKEV +RITA   S  YGRLS++     + T +FDI P  F P PKV S V+  +
Sbjct: 1   MHYMLQKEVVDRITAAPGSKTYGRLSLMAQLWCETTALFDIPPDAFDPPPKVDSAVVRLV 60

Query: 210 PHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE 267
           P   P      L + ++  + AF +RRK LR++         L    I+   RAE L   
Sbjct: 61  PRPAPAWQIDDLATFEETVRLAFAQRRKMLRKTFAHWMNAAALEALDIDPTARAETLDGA 120

Query: 268 DFCRITNI 275
            F R+ N 
Sbjct: 121 AFARLANA 128


>gi|90901924|gb|ABE01848.1| Erm(39)po [Mycobacterium porcinum]
          Length = 246

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 24/264 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H+    +   GQNFL D  ++  I  +  S     +IEIGAG G LT  L  L  R++  
Sbjct: 5   HHG---RHEYGQNFLCDRRVIADIV-TIVSRTTGPIIEIGAGDGALTLPLQRLN-RQLTA 59

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           IE         +          E++  D LK         ++P  ++ NLP+++ T +L 
Sbjct: 60  IE-----IDRRRARRLADRTSAEVVSADFLKYRLP-----TAPHVVVGNLPFHLTTAMLR 109

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +      P W    LL Q EV  R  A   +     ++       +  +   +S   F
Sbjct: 110 RLL----HGPGWTDAVLLMQWEVARRRAAIGGATM---MTAQWWPWFEFGLARKVSADAF 162

Query: 196 FPSPKVTSTVIHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
            P P V + ++       P+         + +  E F  R   + Q L+       L   
Sbjct: 163 RPRPGVDAGLLTITRRGEPLVPTADRRRYQALAHEVFTGRGHGMAQILRHHVDRRWLQAN 222

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           GI  +    +LS + +  + + + 
Sbjct: 223 GIHPSALPRDLSAQQWAALFDAVR 246


>gi|320590414|gb|EFX02857.1| dimethyladenosine transferase [Grosmannia clavigera kw1407]
          Length = 318

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 14/199 (7%)

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNI 115
            GN+T  +L   ARK I IE D +    +       P   +LE++  DA+K +F  F   
Sbjct: 54  TGNITTRILE-KARKCIAIELDPRMAAEVTKRVQGGPLQKKLEVLLGDAIKTEFPPF--- 109

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
                 I+N PY I + L+F  +S    P    +  L+FQKE  +R+ A+     Y RLS
Sbjct: 110 ---DVCISNTPYQISSPLVFKLLSLPNPP---RTAVLMFQKEFAQRLVARPGDTLYCRLS 163

Query: 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKR 233
           V   +  +   +  +    F P P+V S V+   P             +  + + AF ++
Sbjct: 164 VNAQFFARIAHVLKVGKANFNPPPQVESAVVRITPKTGSERPKFNFSEMDGMLRVAFNRK 223

Query: 234 RKTLRQSLKRLGGENLLHQ 252
            +T+R S        +L +
Sbjct: 224 NRTMRASFASKEVLAMLAR 242


>gi|238593367|ref|XP_002393175.1| hypothetical protein MPER_07142 [Moniliophthora perniciosa FA553]
 gi|215460264|gb|EEB94105.1| hypothetical protein MPER_07142 [Moniliophthora perniciosa FA553]
          Length = 228

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 11/177 (6%)

Query: 78  KDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P   RLEI+  D +K D   F         I+N PY I + L+F
Sbjct: 1   MDPRMAAELTKRVQGKPEQRRLEIMIGDFVKADLPYF------DVCISNTPYQISSPLIF 54

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
             +S    P       L+FQ+E   R+ A+  S  + RLS       K   +  +  + F
Sbjct: 55  RLLSQRPLP---RICILMFQREFALRLIAKAGSELWSRLSANVQLYAKVDYLMHVGKNNF 111

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P PKV S+V+   P   P P   E    + +  F +R KT+  +    G   +L +
Sbjct: 112 RPPPKVESSVVRIAPRDPPPPVKFEEFDGLGRIVFSRRNKTIHANFMAKGVIPMLEK 168


>gi|1927195|gb|AAB51440.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces
           viridochromogenes]
          Length = 259

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 111/263 (42%), Gaps = 21/263 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            + + QNFL D     ++A  +    L    ++E+GAG G LT++L     R ++  E D
Sbjct: 8   SRALSQNFLADRAAAGQLARLAAPHGLPVPLLLEVGAGKGALTELLAPRC-RSLLAYEID 66

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +  P+L+   +  P+ + ++ +D L+    +     +P  +  N+P++    ++   + 
Sbjct: 67  PRLVPVLRSRFADAPH-VRVLGEDFLRARAPR-----TPFSVAGNVPFSRTAAVVAWCLR 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A    P     TLL Q E   R T    S  + RL+VLT  R +  +   +    F P P
Sbjct: 121 A----PHLTDATLLTQLEYARRRTGDYGS--WTRLTVLTWPRHEWRLAGRVGRRSFRPVP 174

Query: 200 KVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSL----KRLGGENLLHQA 253
           +V + ++       P+  P      +++    F     +L  SL     R   +     A
Sbjct: 175 RVDAGIVRIERRRTPLLAPGADAGWRELVDLGFSGAGGSLHASLRRARPRRRVDAAFRAA 234

Query: 254 GIETNLRAENLSIEDFCRITNIL 276
           G++ ++    +    + R+  +L
Sbjct: 235 GLDRDVLVGEVPPWTWLRLHEVL 257


>gi|581701|emb|CAA44667.1| methyltransferase [Streptomyces lincolnensis]
          Length = 278

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 107/257 (41%), Gaps = 24/257 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ +GQNFL+D +I+K I  +       ++I    G  ++T  L  LG R V  +E D +
Sbjct: 8   RQDLGQNFLVDPDIIKLIRRAPNERKVPSLIWRRRG--HVTLPLSRLG-RPVTAVELDPR 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               +K +S++ P  ++++ +D L+           P  ++ N+P+++ T  +   + A 
Sbjct: 65  ---RVKRLSARAPENVKVVGEDILRFRLPTV-----PHTVVGNIPFHVTTATMRRILVA- 115

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W S  L+ Q EV  R            ++  +      +++  +    F P+P V
Sbjct: 116 ---PAWVSAVLVVQWEVARRRAGIGGC---SLVTAESWPWFDFSVLKRVPRFAFRPAPSV 169

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGI 255
              ++       P+       +   ++ F  R   LR+ L+R+G              G+
Sbjct: 170 DGGILVIERRPEPLVRERREYQAFVRQVFTGRGHGLREILQRIGRVQDSDLSAWFRAHGV 229

Query: 256 ETNLRAENLSIEDFCRI 272
                 ++L+ E +  +
Sbjct: 230 SPQALPKDLTAEQWASL 246


>gi|40807669|gb|AAR92235.1| Erm(39) [Mycobacterium fortuitum]
          Length = 246

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 96/252 (38%), Gaps = 21/252 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL D  ++  I        G  ++EIGAG G LT  L  LG R +  IE D      
Sbjct: 12  GQNFLRDRRVVGDIVRMVSHTAG-PIVEIGAGDGALTLPLQRLG-RPLTAIEIDLHRARR 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L D ++      E+I  D L+    +     +P  ++ NLP+++ T +L   +  +    
Sbjct: 70  LADRTTA-----EVIATDFLRYRLPR-----TPHVVVGNLPFHLTTAILRRLLHEN---- 115

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            W    LL Q EV  R      +     ++       +  +   +S   F P P V + +
Sbjct: 116 GWTDAILLVQWEVARRRAGVGGATM---MTAQWWPWFEFGLARKVSADAFRPRPSVDAGL 172

Query: 206 IHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           +       P+       + + +    F  R + L Q L+       L   GI  +     
Sbjct: 173 LTIQRRAEPLLPWADRRAYQALVHRVFTGRGRGLAQILRPHVHPRWLSANGIHPSALPRA 232

Query: 264 LSIEDFCRITNI 275
           L+   +  + + 
Sbjct: 233 LTARQWVALFDA 244


>gi|47157009|gb|AAT12376.1| putative dimethyladenosine transferase-like protein [Antonospora
           locustae]
          Length = 219

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 35/222 (15%)

Query: 72  KVIVIEKDQQFFPIL-KDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           K++  EKD +    L K +S++H  ++ E+   DAL+  F  F         I+N+PY I
Sbjct: 1   KLVCYEKDTRLAAELVKKVSARHLSHKFELNVGDALRATFPPF------DMCISNIPYQI 54

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            + LLF  +  D     ++   ++FQ+E  +R+ A+     Y RLSV      K   + +
Sbjct: 55  SSPLLFKLLQED-----FKCAYIMFQREFAQRLIARPGCSEYSRLSVAVQLLAKVHNVMN 109

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN- 248
           +S + F P P V S+V+   P +   P  +E   ++ +  F ++ K L    KR   ++ 
Sbjct: 110 VSRNSFVPPPMVDSSVVRIEPRVPRPPINIEEFNRLLKICFLRKNKRLSGIFKRTVIQDM 169

Query: 249 ------------------LLHQAGIETNLRAENLSIEDFCRI 272
                             +L + G +   RA  + IEDF  +
Sbjct: 170 QKVNKAYTLQEIEKKTTGILRKLGAD---RAAKMDIEDFLFL 208


>gi|34733387|gb|AAN86837.2| Erm(38) [Mycobacterium smegmatis]
          Length = 386

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 104/269 (38%), Gaps = 27/269 (10%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H+    +  +GQNFL D  ++  I E     +G  +IEIGAG G LT  L  L AR +  
Sbjct: 5   HHG---RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTA 59

Query: 76  IEKDQQFFPILKDISSQHPNR-----LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +E D +    L   +++          E++  D L+    +     SP  ++ NLP+++ 
Sbjct: 60  VEVDARRARRLAQRTARSAPGPASRPTEVVAADFLRYPLPR-----SPHVVVGNLPFHLT 114

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T +L   +      P W +  LL Q EV  R  A   +     ++       +  +   +
Sbjct: 115 TAILRRLL----HGPGWTTAVLLMQWEVARRRAAVGGATM---MTAQWWPWFEFGLARKV 167

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG--- 245
           S   F P P V + ++       P+         + +    F  R   + Q L+RL    
Sbjct: 168 SAASFTPRPAVDAGLLTITRRSRPLVDVADRARYQALVHRVFTGRGHGMAQILQRLPTPV 227

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITN 274
               L   GI  N     LS   +  +  
Sbjct: 228 PRTWLRANGIAPNSLPRQLSAAQWAALFE 256


>gi|256412|gb|AAB23456.1| lincomycin-resistance determinant LmrB=23S rRNA
           adenine(2058)-N-methyltransferase homolog [Streptomyces
           lincolnensis, 78-11, Peptide, 278 aa]
          Length = 278

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 107/257 (41%), Gaps = 24/257 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ +GQNFL+D +I+K I  +       ++I    G  ++T  L  LG R V  +E D +
Sbjct: 8   RQDLGQNFLVDPDIIKLIRRAPNERKVPSLIWRRRG--HVTLPLSRLG-RPVTAVELDPR 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               +K +S++ P  ++++ +D L+           P  ++ N+P+++ T  +   + A 
Sbjct: 65  ---RVKRLSARAPENVKVVGEDILRFRLPTV-----PHTVVGNIPFHVTTATMRRILVA- 115

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W S  L+ Q EV  R            ++  +      +++  +    F P+P V
Sbjct: 116 ---PAWVSAVLVVQWEVARRRAGIGGC---SLVTAESWPWFDFSVLKRVPRFAFRPAPSV 169

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGI 255
              ++       P+       +   ++ F  R   LR+ L+R+G              G+
Sbjct: 170 DGGILVIERRPEPLVRERREYQDFVRQVFTGRGHGLREILQRIGRVQDSDLSAWFRAHGV 229

Query: 256 ETNLRAENLSIEDFCRI 272
                 ++L+ E +  +
Sbjct: 230 SPQALPKDLTAEQWASL 246


>gi|260427332|ref|ZP_05781311.1| dimethyladenosine transferase [Citreicella sp. SE45]
 gi|260421824|gb|EEX15075.1| dimethyladenosine transferase [Citreicella sp. SE45]
          Length = 257

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/127 (45%), Positives = 85/127 (66%), Gaps = 2/127 (1%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M+  +    L+ +++ + +  KK +GQNFLLDLN+  KIA  +G L G+ V+EIG GPG 
Sbjct: 1   MSAIDGLPPLREVIATHDLSAKKSLGQNFLLDLNLTAKIARQAGDLAGMDVLEIGPGPGG 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LL  GAR+V+ IEKD +    L +I++ +P RLE+I+ DAL+VD     +++ PI 
Sbjct: 61  LTRGLLAEGARRVLAIEKDARCLSALAEIAAAYPGRLEVIEGDALQVD--PLQHLTPPIA 118

Query: 121 IIANLPY 127
           I ANLPY
Sbjct: 119 ICANLPY 125



 Score = 79.9 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGIETNLRAENLSIEDFCRIT 273
           P   + L+++   AF +RRK LR +LK L    E+ L  + I    RAE +S+E FC + 
Sbjct: 194 PAEQKVLERVVAAAFNQRRKMLRAALKGLAPDIEDRLQASDIAPTDRAEQVSLEQFCALA 253

Query: 274 NILT 277
             L 
Sbjct: 254 RTLA 257


>gi|255023855|ref|ZP_05295841.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-208]
          Length = 143

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 7/133 (5%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N ++++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNVQVVHGDVLKADVEEVVAEQFAKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWIS 139
           Y + T ++   + 
Sbjct: 131 YYVTTPIILKLLH 143


>gi|188593347|emb|CAO72210.1| ErmX protein [Bifidobacterium thermophilum]
 gi|188593353|emb|CAO72214.1| ErmX protein [Bifidobacterium thermophilum]
          Length = 255

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 26/271 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHENGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +    L   +S     +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVDAKLAAKLTQETSSAA--VEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   + A    P W    LL Q EV  R  A   +     ++          +   +   
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163

Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245
            F P P V   ++      +P       ++ + +    F  R + + + L+R G      
Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275
             ++ L   GI+       L   D+  +  +
Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254


>gi|309798999|ref|ZP_07693256.1| dimethyladenosine transferase [Streptococcus infantis SK1302]
 gi|308117403|gb|EFO54822.1| dimethyladenosine transferase [Streptococcus infantis SK1302]
          Length = 145

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 7/145 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + +IEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNIIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  K    F N  
Sbjct: 60  LTEFLAERAA-EVMAFEIDHRLVPILADTLRDFDN-VTVVNEDILKVDLAKHIQNFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISAD 141
            PI+++ANLPY I T +L + I + 
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESG 142


>gi|124515833|gb|EAY57342.1| putative dimethyladenosine transferase [Leptospirillum rubarum]
          Length = 256

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 131/231 (56%), Gaps = 16/231 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            ++EIG G G L+ +L T+    + ++E+D+Q    L+   S+ P  + I+++DA++   
Sbjct: 11  RILEIGPGKGILSGVLATMTED-LWLVERDRQLAETLRKTFSETPG-VRILEEDAMEF-- 66

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
             F N  SP  +++NLPYNI   L   ++++D +PP +  + L+FQ+EV +R+ A+   P
Sbjct: 67  -SFGNDRSPYILVSNLPYNISVPLYLKFLASD-FPPVF--MVLMFQREVAKRLLARTTDP 122

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229
            YG LSV+T +  +     D++P  F+P+PKV S+V+  +P       C  +   ++++ 
Sbjct: 123 DYGHLSVVTSYLAQIRKRIDLAPGAFYPAPKVHSSVVTVLPLS-VQDECTWAAISLSRKL 181

Query: 230 FGKRRKTLRQSLKRLGG--ENLLHQAGIET-----NLRAENLSIEDFCRIT 273
           F  RRK+L ++L+      E+LL     +T     + + ++LS EDF ++ 
Sbjct: 182 FCYRRKSLGRALRTAFSGEESLLDGTFFKTETDFFSRKVDSLSPEDFRKLA 232


>gi|188593342|emb|CAO72206.1| ErmX protein [Bifidobacterium thermophilum]
          Length = 284

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 26/271 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHENGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +    L   +S     +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVDAKLAAKLTQETSSAA--VEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   + A    P W    LL Q EV  R  A   +     ++          +   +   
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163

Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245
            F P P V   ++      +P       ++ + +    F  R + + + L+R G      
Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275
             ++ L   GI+       L   D+  +  +
Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254


>gi|242045760|ref|XP_002460751.1| hypothetical protein SORBIDRAFT_02g034340 [Sorghum bicolor]
 gi|241924128|gb|EER97272.1| hypothetical protein SORBIDRAFT_02g034340 [Sorghum bicolor]
          Length = 396

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 16/220 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
               K  GQ+ L +  +L  I   +    G  V+E+G G GNLT  LL   A  V  +E 
Sbjct: 32  FRLHKRRGQHLLTNPRVLDAIVRRAAIRPGDAVLEVGPGTGNLTVRLLASPAASVAAVEI 91

Query: 79  DQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           D +    +   +      ++L +   DA+KVDF +F         ++N+PY I + L   
Sbjct: 92  DPRMAAAVAARARDLGLAHKLTVTTGDAMKVDFPEF------DACVSNIPYAISSPLTAK 145

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +        + + TLL Q+E   R+        +  L+         +++ D+S + F 
Sbjct: 146 LLFG---SYRFRTATLLVQREFARRLVGAPGHGEHNHLATNVRLVAHVSLLMDVSKNDFV 202

Query: 197 PSPKVTSTVIHF-----IPHLNPIPCCLESLKKITQEAFG 231
           P P V S+++        P        L+   +  +  FG
Sbjct: 203 PVPGVDSSLVEIRMKEVRPTEVEPGISLDEWLEFARVCFG 242


>gi|13517632|gb|AAK28910.1|AF338706_1 ErmX [Corynebacterium jeikeium]
          Length = 284

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 100/263 (38%), Gaps = 25/263 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +
Sbjct: 8   RHEHGQNFLTDHKIINSIVDLVKQTSG-PIIEIGPGSGALTHPISHLG-RAITAVEVDAK 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   ++     +E++ DD L           +P  I+ N+P+++ T +L   + A 
Sbjct: 66  LAAKLTKKTASAS--VEVVHDDFLNFPLPA-----TPCVIVGNIPFHLTTAILRKLLHA- 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W    LL Q EV  R  A   +     ++          +        F P P V
Sbjct: 118 ---PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRXPRSAFRPQPNV 171

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG-------GENLLHQ 252
              ++      +P       ++ + +    F  R + + + L+R G        ++ L  
Sbjct: 172 DGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRSETQSWLRS 231

Query: 253 AGIETNLRAENLSIEDFCRITNI 275
            GI+       L   D+  +  +
Sbjct: 232 RGIDPATLPPRLHTSDWIDLFQV 254


>gi|188593350|emb|CAO72212.1| ErmX protein [Bifidobacterium thermophilum]
          Length = 284

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 26/271 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHENGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +    L   +S     +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVDAKLAAKLTQETSSAA--VEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   + A    P W    LL Q EV  R  A   +     ++          +   +   
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163

Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245
            F P P V   ++      +P       ++ + +    F  R + + + L+R G      
Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275
             ++ L   GI+       L   D+  +  +
Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254


>gi|262203305|ref|YP_003274513.1| rRNA (adenine-N(6)-)-methyltransferase [Gordonia bronchialis DSM
           43247]
 gi|262086652|gb|ACY22620.1| rRNA (adenine-N(6)-)-methyltransferase [Gordonia bronchialis DSM
           43247]
          Length = 253

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 99/257 (38%), Gaps = 26/257 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +  +GQNFL+    +++I +   + DG  ++EIG+G G LT  L  L  R +  I+ D +
Sbjct: 10  RHELGQNFLVHQPTIQRIVDLIDATDG-PILEIGSGGGALTAHLAALD-RPLTAIDIDAR 67

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+         +  +  D L        ++     ++ N+P+++ + +L   +  D
Sbjct: 68  LIHSLRQRFPH----INALHADVLT-------HVIDAPVVVGNIPFHLTSAILRRLLGHD 116

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           TW        LL Q EV  R      +     ++          +   +    F P+P V
Sbjct: 117 TW----TDSVLLVQWEVARRRAGVGGATM---MTAQAAPWFDFALHGRVPARAFRPAPTV 169

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGI 255
              ++       P+  P      ++   + F  R + +   L+R        + L ++G+
Sbjct: 170 DGGILTIARRRRPLIDPRDRRRYERFVGDVFTGRGRGIAAILRRHADGRRVADALRRSGV 229

Query: 256 ETNLRAENLSIEDFCRI 272
                  +L +  +  +
Sbjct: 230 GPWALPRDLDVAQWVSL 246


>gi|215445160|ref|ZP_03431912.1| dimethyladenosine transferase [Mycobacterium tuberculosis T85]
          Length = 209

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 14/184 (7%)

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            +    +L +D E     ++P  ++ANLPYN+    L + +      P    +T++ Q E
Sbjct: 2   TVSIGTSLALDREDLA--AAPTAVVANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAE 56

Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC 217
           V ER+ A+  S  YG  SV   +  +      +SP VF+P P+V S ++    +      
Sbjct: 57  VAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWP 116

Query: 218 CLESLKK----ITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIED 268
             ++ ++    +   AF +RRKT R +  +  G      N L  A I+   R E LSI+D
Sbjct: 117 TDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDD 176

Query: 269 FCRI 272
           F R+
Sbjct: 177 FVRL 180


>gi|188593360|emb|CAO72218.1| ErmX protein [Bifidobacterium animalis]
          Length = 255

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 26/271 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +     K         +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   + A    P W    LL Q EV  R  A   +     ++          +   +   
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163

Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245
            F P P V   ++      +P       ++ + +    F  R + + + L+R G      
Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275
             ++ L   GI+       L   D+  +  +
Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254


>gi|13541146|ref|NP_110834.1| rRNA dimethyladenosine transferase [Thermoplasma volcanium GSS1]
 gi|14324532|dbj|BAB59459.1| dimethyladenosine transferase [Thermoplasma volcanium GSS1]
          Length = 237

 Score =  148 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 26/258 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            K +GQ FL    I +   +      G +V+EIG G G LT +LL  G   V  +EKD+ 
Sbjct: 4   SKRLGQVFLRSRRIAEYEVDLLNGHPGDSVLEIGPGHGILTSILLDRG-YYVTAVEKDRF 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
            +    ++ S     L +   D L +  +K+        II N+PY I + ++F     +
Sbjct: 63  VY---NELLSIKNKNLNLFNMDFLDMPPQKY------DFIIGNIPYYISSDVIFKLYDFE 113

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                + +  ++ QKE  +++T   N     RL V    R +  +   +    F P PKV
Sbjct: 114 -----FSASVIMVQKEFADKLT---NVKDSSRLYVNAYVRYEIDLKRYVGRKNFNPQPKV 165

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S ++        +   L+ L    +  F K+RK +      +  E++        N R 
Sbjct: 166 DSAILLLKKKKINLDIPLDYLDSKLKVMFSKKRKMISNIF-EIYPESM-------GNRRP 217

Query: 262 ENLSIEDFCRITNILTDN 279
            +L+  +   +  +L  +
Sbjct: 218 SDLTASEILDLVRLLHAH 235


>gi|32470494|ref|NP_863178.1| Erm(X) [Corynebacterium diphtheriae]
 gi|172041601|ref|YP_001801315.1| 23S rRNA adenine N-6-methyltransferase [Corynebacterium urealyticum
           DSM 7109]
 gi|296285265|ref|YP_003657307.1| erythromycin resistance protein [Corynebacterium resistens DSM
           45100]
 gi|300932440|ref|ZP_07147696.1| erythromycin resistance protein [Corynebacterium resistens DSM
           45100]
 gi|20149029|gb|AAM12763.1|AF492560_4 Erm(X) [Corynebacterium diphtheriae]
 gi|109158265|gb|ABG26481.1| ErmX [Corynebacterium urealyticum DSM 7109]
 gi|171852905|emb|CAQ05881.1| 23S rRNA adenine N-6-methyltransferase [Corynebacterium urealyticum
           DSM 7109]
 gi|296172995|emb|CBL95077.1| erythromycin resistance protein [Corynebacterium resistens DSM
           45100]
          Length = 284

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 26/271 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +     K         +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   + A    P W    LL Q EV  R  A   +     ++          +   +   
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRS 163

Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245
            F P P V   ++      +P       ++ + +    F  R + + + L+R G      
Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275
             ++ L   GI+       L   D+  +  +
Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254


>gi|149003647|ref|ZP_01828512.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69]
 gi|147758379|gb|EDK65379.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69]
          Length = 146

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 7/145 (4%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++   D + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK----FFNIS 116
           LT+ L    A +V+  E D +  PIL D      N + ++ +D LKVD  +    F N +
Sbjct: 60  LTEFLAERAA-QVMAFEIDHRLVPILVDTLRDFDN-VTVVNEDILKVDLAQHIQNFKNPN 117

Query: 117 SPIRIIANLPYNIGTRLLFNWISAD 141
            PI+++ANLPY I T +L + I + 
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESG 142


>gi|289757093|ref|ZP_06516471.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289712657|gb|EFD76669.1| predicted protein [Mycobacterium tuberculosis T85]
          Length = 207

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 14/177 (7%)

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           L +D E     ++P  ++ANLPYN+    L + +      P    +T++ Q EV ER+ A
Sbjct: 7   LALDREDLA--AAPTAVVANLPYNVAVPALLHLL---VEFPSIRVVTVMVQAEVAERLAA 61

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224
           +  S  YG  SV   +  +      +SP VF+P P+V S ++    +        ++ ++
Sbjct: 62  EPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRR 121

Query: 225 ----ITQEAFGKRRKTLRQSLKRLGGE-----NLLHQAGIETNLRAENLSIEDFCRI 272
               +   AF +RRKT R +  +  G      N L  A I+   R E LSI+DF R+
Sbjct: 122 RVFELVDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 178


>gi|227487333|ref|ZP_03917649.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227543276|ref|ZP_03973325.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227092759|gb|EEI28071.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227180946|gb|EEI61918.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 284

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 26/271 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +     K         +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   + A    P W    LL Q EV  R  A   +     ++          +   +   
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163

Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245
            F P P V   ++      +P       ++ + +    F  R + + + L+R G      
Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275
             ++ L   GI+       L   D+  +  +
Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254


>gi|167042718|gb|ABZ07438.1| putative ribosomal RNA adenine dimethylase [uncultured marine
           crenarchaeote HF4000_ANIW133O4]
          Length = 233

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 103/255 (40%), Gaps = 28/255 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K +GQ+FL    I K I  S+       V+EIG G G L   L    A++V  IEKDQ 
Sbjct: 4   RKNLGQHFLKSKTIAKSIVSSANITRNDFVLEIGTGYGILIPYLCK-NAKQVFSIEKDQN 62

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                K     + N L +   D    D             ++NLPY+  +R    W+   
Sbjct: 63  LHLSAKSNFHDYTN-LVLEYGDGFNSDHNF-------SVFVSNLPYS-KSRFAIEWLLQK 113

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +    ++ QKE  E++++ +       +SVL  +  +   + ++    FFP PKV
Sbjct: 114 K----FSRAVIMVQKEFSEKLSSNEKHM---AISVLANYGFRIKFLMNVKKSNFFPMPKV 166

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA 261
            S VI             + L    +  F  RRKTL+  LK+ G           +  R 
Sbjct: 167 DSVVILLEQKR----IISKVLISTVKRIFSYRRKTLQNILKQFG-------LNSTSKKRL 215

Query: 262 ENLSIEDFCRITNIL 276
           + LS ++  +I   +
Sbjct: 216 DELSGDEIIKIAQKI 230


>gi|118471619|ref|YP_886024.1| ribosomal RNA adenine dimethylase family protein [Mycobacterium
           smegmatis str. MC2 155]
 gi|118172906|gb|ABK73802.1| ribosomal RNA adenine dimethylase family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 386

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 27/269 (10%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H+    +  +GQNFL D  ++  I E     +G  +IEIGAG G LT  L  L AR +  
Sbjct: 5   HHG---RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTA 59

Query: 76  IEKDQQFFPILKDISSQHPNR-----LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +E D +    L   +++          E++  D L+    +     SP  ++ NLP+++ 
Sbjct: 60  VEVDARRARRLAQRTARSAPGPASRPTEVVAADFLRYPLPR-----SPHVVVGNLPFHLT 114

Query: 131 TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           T +L   +      P W +  LL Q EV  R  A   +     ++       +  +   +
Sbjct: 115 TAILRRLL----HGPGWTTAVLLMQWEVARRRAAVGGATM---MTAQWWPWFEFGLARKV 167

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRK---TLRQSLKRLG 245
           S   F P P V + ++       P+         + +    F  R      +RQ L    
Sbjct: 168 SAASFTPRPAVDAGLLTITRRSRPLVDVADRARYQALVHRVFTGRGHGMAQIRQRLPTPV 227

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITN 274
               L   GI  N     LS   +  +  
Sbjct: 228 PRTWLRANGIAPNSLPRQLSAAQWAALFE 256


>gi|291300090|ref|YP_003511368.1| rRNA (adenine-N(6)-)-methyltransferase [Stackebrandtia nassauensis
           DSM 44728]
 gi|290569310|gb|ADD42275.1| rRNA (adenine-N(6)-)-methyltransferase [Stackebrandtia nassauensis
           DSM 44728]
          Length = 278

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 25/264 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + QNFL +  +   +   SG      V+EIG G G LTQ +    A +V+  E D  
Sbjct: 13  RRRLSQNFLTEPRVAAAVVRLSGVTRADLVVEIGPGRGILTQAIA-RKAGRVLAYELDPV 71

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L       P R+  +  D L     +      P  I+AN+PY   + ++   + A 
Sbjct: 72  LAKRLAARYGDDP-RVHCVHRDFLSTSPPR-----EPFSIVANIPYARTSAIVEWCLKAR 125

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS---VLTGWRTKATMMFDISPHVFFPS 198
                 ++ TL+ Q E      A+K S  YGR S   V +  R +  ++  +  + F P 
Sbjct: 126 E----LDAATLITQLEY-----ARKRSGDYGRWSQVTVESWPRFEWRLLGRVDRYKFDPV 176

Query: 199 PKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE----NLLHQ 252
           P+V S ++              +   ++     F     +L  SL+R  G+        +
Sbjct: 177 PRVDSGILRLERRETALLPGSAMADYQRFVALGFTGVGGSLAASLRREFGDRAVRRAFAR 236

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
           A +        ++   +  +   L
Sbjct: 237 AEVHPAAVVAFVTPPQWIELFTQL 260


>gi|325067303|ref|ZP_08125976.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Actinomyces oris K20]
          Length = 188

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 85/181 (46%), Gaps = 10/181 (5%)

Query: 73  VIVIEKDQQFFPIL----KDISSQHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLP 126
           +I +E D      L     D       RL +IQ DAL +            P R++ANLP
Sbjct: 1   MIAVEIDPALARALPITVADRMPPAAGRLTLIQADALSITGPDSLGDAGHPPTRLVANLP 60

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           YN+   +L   + A    P  ES+T++ Q EV +R+ A+  S  YG  SV   W   A  
Sbjct: 61  YNVAVPVLLTALEA---LPSLESVTVMVQAEVADRLAAEPGSRTYGVPSVKAAWYAAARR 117

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLG 245
              IS HVF+P P V S ++  +    P      E +  +   AF +RRKTLR++L RL 
Sbjct: 118 TLTISRHVFWPVPNVDSALVELVRRRPPTTRATREQVFAVVDAAFAQRRKTLRKALARLA 177

Query: 246 G 246
           G
Sbjct: 178 G 178


>gi|307329006|ref|ZP_07608174.1| rRNA (adenine-N(6)-)-methyltransferase [Streptomyces violaceusniger
           Tu 4113]
 gi|306885368|gb|EFN16386.1| rRNA (adenine-N(6)-)-methyltransferase [Streptomyces violaceusniger
           Tu 4113]
          Length = 297

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 19/261 (7%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            GQNFL+D   + ++  ++    G  ++E+GAG G LT+ L     R++I  E D+   P
Sbjct: 23  YGQNFLVDPGAVARVVRAARPGPGDLLVEVGAGKGVLTEALAPRC-RELISYEIDRHLIP 81

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            L++  +++P ++ ++  D L            P  ++ N+PY     ++   + A    
Sbjct: 82  GLRERLARYP-QVRVVHQDFL-----DAAPPREPFALVGNVPYARTAEIVAWALRAA--- 132

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
           P   S TLL Q E   + T       +  L+V +    +  +   ++   F P P V   
Sbjct: 133 PRLTSATLLTQAEYARKRTGDYG--RWSLLTVRSWPEVEWRLCGRVARAAFRPVPAVDGG 190

Query: 205 VIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQAGIET 257
           ++       P+   P    +   + +  F     +L  SL+R+      +     AG+  
Sbjct: 191 ILRLTRRPRPLLTDPVARSAYADLVELGFTGLGGSLHASLRRICPARALDRAFRAAGLGR 250

Query: 258 NLRAENLSIEDFCRITNILTD 278
            +    +S E +  +   LT+
Sbjct: 251 EVVVAYVSPEQWLVLAQELTE 271


>gi|269986492|gb|EEZ92777.1| ribosomal RNA adenine methylase transferase [Candidatus
           Parvarchaeum acidiphilum ARMAN-4]
          Length = 264

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 11/213 (5%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL D  + +KI ++S       VIEIG+G G LT+ +     +KV  IE D   F   + 
Sbjct: 7   FLRDEKVFQKIIQASDLNSEDVVIEIGSGDGRLTKHIAPY-VKKVYAIELDTNLFDSART 65

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           +   + N +E I  DAL ++F    N     +II+NLPY I + +    I          
Sbjct: 66  LLEDNKN-IEFINGDALDLEFPDDAN-----KIISNLPYAISSPITEKIIYFLNNKKDGL 119

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
              L++Q E GER+ A      Y  +SV T +     ++  +S + F P P V S ++  
Sbjct: 120 -AVLMYQLEFGERMLAFPGIRDYSMISVFTQYTCNIKLVSMVSKNAFRPRPAVESILLKV 178

Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSL 241
            P    I        ++    F  ++K L  +L
Sbjct: 179 TPKKISINEDFLEFARLL---FQHKKKNLYSAL 208


>gi|45758647|gb|AAS76623.1| Erm(40) [Mycobacterium mageritense]
          Length = 251

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 102/261 (39%), Gaps = 21/261 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D  ++  I +      G +++EIGAG G LT  +  LG R +  IE D++
Sbjct: 8   RHEHGQNFLCDRRVVADIVKIVSHTTG-SIVEIGAGDGALTVPMQRLG-RPLTAIEIDRR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L   ++ H     ++  D L+          +   ++ NLP+++ T +L   +   
Sbjct: 66  RAERLARRTTAH-----VVTADFLRYRLP-----PTEHVVVGNLPFHLTTAILRRLL--- 112

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W    LL Q EV  R  A   +     ++       +  +   +S   F P P V
Sbjct: 113 -HSPAWTDAVLLMQWEVARRRAAVGGATM---MTAQWWPWFEFGLARKVSADAFRPRPSV 168

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            + ++       P+         + +    F  R + + Q +      + L   GI  + 
Sbjct: 169 DAGLLTITRRREPLIDGADRRRYQALVHAVFTGRGRGVAQIVGPRVPRHWLRHNGITPSA 228

Query: 260 RAENLSIEDFCRITNILTDNQ 280
              +L+   +  +  + ++ +
Sbjct: 229 LPRDLTAAQWAALFEVTSEAK 249


>gi|239928180|ref|ZP_04685133.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291436510|ref|ZP_06575900.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339405|gb|EFE66361.1| rRNA (adenine-N6-)-methyltransferase [Streptomyces ghanaensis ATCC
           14672]
          Length = 259

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 21/264 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            + + QNFL D    ++ A  +         ++E+GAG G LT +L  L  R++   E D
Sbjct: 8   SRALSQNFLADRATARRFARLAVPHGEPVPLLLEVGAGKGALTDVLAPLC-RELHAYEID 66

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +  P L+   S  P+ + ++  D L     +     +P  +  N+P++    ++   + 
Sbjct: 67  PRLVPTLRGRFSGTPH-VRVVGADFLAAHPPR-----TPFAVAGNVPFSRTAAVVDWCLR 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A    P     TLL Q E   + T       + RL+VLT  R +  ++  +    F P P
Sbjct: 121 A----PRLTDATLLTQLEYARKRTGDHG--RWTRLTVLTWPRHEWRLLARVDRRSFRPVP 174

Query: 200 KVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQA 253
           +V + V+       P+         + +    F     +L  SL R       +     A
Sbjct: 175 RVDAGVVRIERRRVPLLDAAASSRWRHLVDLGFSGVGGSLHASLCRAWPRRRVDAAFRAA 234

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
            ++  +    ++ E + R+  +L 
Sbjct: 235 RLDPGVLVGQVAPERWLRLHEVLA 258


>gi|315274531|ref|ZP_07869435.1| dimethyladenosine transferase [Listeria marthii FSL S4-120]
 gi|313615841|gb|EFR89065.1| dimethyladenosine transferase [Listeria marthii FSL S4-120]
          Length = 167

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 10/160 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +   FL+D NIL +I +++       VIEIG G G LT+ L    A 
Sbjct: 13  EILKKYGFLFKKSLXXXFLIDTNILTRITDTAEITKETNVIEIGPGIGALTEQLAKT-AN 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIANLP 126
           +V+  E DQ+  PIL D  S + N + ++  D LK D E+     F     P++I+ANLP
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAY-NNVRVVHGDVLKADVEEVIAQQFAKPELPLKIVANLP 130

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
           Y + T ++   +  +      +S+T + QKEV +RI+A  
Sbjct: 131 YYVTTPIILKLLHDNIPA---DSMTFMLQKEVADRISAVP 167


>gi|124028496|ref|YP_001013816.1| dimethyladenosine transferase [Hyperthermus butylicus DSM 5456]
 gi|123979190|gb|ABM81471.1| Dimethyladenosine transferase [Hyperthermus butylicus DSM 5456]
          Length = 251

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 14/258 (5%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  ++ +GQ+FL+   + +  A  +       ++E+G G G LT  +L   + ++  +E 
Sbjct: 2   LRARRELGQHFLVARWVARIFAGWACRFR--RLLEVGVGQGFLTSTILRSCSVEIAGLEL 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D +    L  IS      + +I  DA+    E    +     +  ++PYNI   LL   +
Sbjct: 60  DLRLVGELASISFYFTGFMPVI-ADAV----EPPLRLGGVDAVYGSIPYNITGPLLSLLV 114

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
                P       LL Q+EV +R+ A+  +  YGR++VL            + P  F P 
Sbjct: 115 VEARKP-----ALLLLQREVVDRLAAKPGTASYGRITVLVRLVYDVKPGPVVPPSAFRPR 169

Query: 199 PKVTSTVIHFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG-IE 256
           PKV S ++  +P  + P P  L  ++++T+  F +R K   +   +  G  L    G + 
Sbjct: 170 PKVYSRIVELVPRPDAPSPDMLRRVEELTKCMFSERNKRAAKVAAKCIGIELSKIEGLVG 229

Query: 257 TNLRAENLSIEDFCRITN 274
            ++R   L  E F ++ +
Sbjct: 230 RDIRVYQLEPEKFIQLLD 247


>gi|296271439|ref|YP_003654071.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobispora bispora DSM
           43833]
 gi|296094226|gb|ADG90178.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobispora bispora DSM
           43833]
          Length = 278

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 94/233 (40%), Gaps = 16/233 (6%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            +  ++ +  ++ + QNF++D   + ++ +++       V+E GAG G LT  L     R
Sbjct: 19  ALSKNHNLR-RRALSQNFMIDPRAVARVVDAARLSPDDLVVEPGAGYGALTLALARTC-R 76

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +VI  E D      L   +   P  + ++  D L+    +      P  ++ N+PY++ +
Sbjct: 77  RVIAYEIDPVAAGRLAARTRGDPA-VHVVAGDFLRARPPR-----EPFAVVGNIPYHLTS 130

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   + A    P   + TL+ Q E   + T       +  ++V T       +   I 
Sbjct: 131 PIVDWCLRA----PALSAATLVTQAEYARKRTGGYG--RWSLVTVRTWPGFIWRIAGRID 184

Query: 192 PHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLK 242
              F P P + S ++       P      L   + + +  F  R  +L  SL+
Sbjct: 185 RSAFRPMPSIDSAILRIERRPAPLVPVSALREYRAMVELGFRGRGGSLYASLR 237


>gi|188593358|emb|CAO72217.1| ErmX protein [Bifidobacterium thermophilum]
          Length = 251

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 105/268 (39%), Gaps = 26/268 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHENGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +    L   +S     +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVDAKLAAKLTQETSSAA--VEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   + A    P W    LL Q EV  R  A   +     ++          +   +   
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163

Query: 194 VFFPSPKVTST--VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245
            F P P V     VI ++          ++ + +    F  R + + + L+R G      
Sbjct: 164 AFRPQPNVDGGILVIRWVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRI 272
             ++ L   GI+       L   D+  +
Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDL 251


>gi|159041898|ref|YP_001541150.1| ribosomal RNA adenine methylase transferase [Caldivirga
           maquilingensis IC-167]
 gi|157920733|gb|ABW02160.1| ribosomal RNA adenine methylase transferase [Caldivirga
           maquilingensis IC-167]
          Length = 273

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 107/249 (42%), Gaps = 16/249 (6%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +F++D   L  IA+ +       V+E+G G   LT  L    A+ V   + +      +K
Sbjct: 34  HFMVDPVYLNTIAQLA---KDEKVLEVGFGLSYLTHYLAKY-AQHVFACDVNPMMIKAIK 89

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            I     N  ++   DAL             + +++N+PY+I +RLL             
Sbjct: 90  AIGLSEVNA-DLFICDALTY------KPPIELTVVSNIPYSITSRLL----LRLLTDYGA 138

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207
             L L  Q+EV  R+ A+  S  YGRLSV+T   +   ++  + P  F+P PKV S ++ 
Sbjct: 139 RKLILTLQREVALRLAAKPGSTDYGRLSVITQCLSLVKVIKHVPPWAFWPRPKVYSAIVE 198

Query: 208 FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIE 267
             P   P    + +L+ +T + F +  K   + +K+  G           N R   LS+ 
Sbjct: 199 LKPLPKPC-VDVRALESLTSKLFTQPNKKAIKVIKQFYGLREGEAPSYLLNKRVRELSVN 257

Query: 268 DFCRITNIL 276
           +   + N+L
Sbjct: 258 EVAELVNVL 266


>gi|188593355|emb|CAO72215.1| ErmX protein [Bifidobacterium thermophilum]
          Length = 284

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 104/271 (38%), Gaps = 26/271 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHEYGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E + +     K         +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVNAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   + A    P W    LL Q EV  R  A   +     ++          +   +   
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRT 163

Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245
            F P P V   ++      +P       ++ + +    F  R + + + L+R G      
Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275
             ++ L   GI+       L   D+  +  +
Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254


>gi|302554978|ref|ZP_07307320.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM
           40736]
 gi|302472596|gb|EFL35689.1| dimethyladenosine transferase [Streptomyces viridochromogenes DSM
           40736]
          Length = 259

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            + + QNFL D    ++ A  +         ++E+GAG G LT  L     +++   E D
Sbjct: 8   SRALSQNFLADRATAERFARLAAPQARPIPLLLEVGAGKGALTVPLA-RHCQELRAYEID 66

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +  P+L+   S  P+ + ++  D L           +P  +  N+P++    ++   + 
Sbjct: 67  PRLVPVLRGRLSGTPH-VRVVGGDFL-----ALRPPRTPFSVAGNVPFSRTAAVVDWCLR 120

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A    P     TLL Q E   + T      ++  L+V +  R +  ++  +    F P P
Sbjct: 121 A----PALTDATLLTQLEYARKRTGDYG--NWTLLTVRSWPRYEWLLLGRVDRRDFRPVP 174

Query: 200 KVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQA 253
           +V + V+       P+       S + + +  F     +L  SL+R       +     A
Sbjct: 175 RVDAGVLRIERRATPLLDEAAYRSWRSLVELGFSGVGGSLHASLRRAHPRRRVDAAFRAA 234

Query: 254 GIETNLRAENLSIEDFCRITNILTD 278
            ++       ++   + R+   LT 
Sbjct: 235 RLDPGALVGEVTPGRWLRLHEALTS 259


>gi|13517628|gb|AAK28907.1|AF338705_1 ErmX [Corynebacterium jeikeium]
          Length = 284

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 26/271 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNF  +  I+K I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHEHGQNFFTNHKIIKSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +     K         +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           L   + A    P W    LL Q EV  R  A   +     ++          +   +   
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM--MTAQWSPWFTFHLGSRVPRS 163

Query: 194 VFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG------ 245
            F P P V   ++      +P       ++ + +    F  R + + + L+R G      
Sbjct: 164 AFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRAGLFSSRS 223

Query: 246 -GENLLHQAGIETNLRAENLSIEDFCRITNI 275
             ++ L   GI+       L   D+  +  +
Sbjct: 224 ETQSWLRSRGIDPATLPPRLHTNDWIDLFQV 254


>gi|309798998|ref|ZP_07693255.1| dimethyladenosine transferase [Streptococcus infantis SK1302]
 gi|308117402|gb|EFO54821.1| dimethyladenosine transferase [Streptococcus infantis SK1302]
          Length = 140

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 11/136 (8%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + QKEV +RI+A+ N+  YG LS+   +   A + F +   VF P+P V S ++  +   
Sbjct: 1   MMQKEVADRISAKPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRLP 60

Query: 213 NPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRA 261
            P     +     K+++ +F  RRKTL  +L    G+           L QAG+  ++R 
Sbjct: 61  EPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEIKDKLTKALDQAGLSPSVRG 120

Query: 262 ENLSIEDFCRITNILT 277
           E L +E+F  + + L 
Sbjct: 121 EALGLEEFASLADALK 136


>gi|1169554|sp|P45439|ERMS_STRFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|153253|gb|AAA26742.1| ribosomal RNA N-methyltransferase [Streptomyces fradiae]
          Length = 319

 Score =  144 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 19/265 (7%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             ++ + QNFL    + +++A       G  ++E+GAG G LT+ L     R ++  E D
Sbjct: 58  RARRELSQNFLARRAVAERVARLVRPAPGGLLLEVGAGRGVLTEALAPYCGR-LVAHEID 116

Query: 80  QQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
            +  P L+D     H   + I   D L     +      P  +  N+PY+    ++   +
Sbjct: 117 PRLLPALRDRFGGPHHAHVRISGGDFLAAPVPR-----EPFALAGNIPYSRTAGIVDWAL 171

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            A T      S T + Q E   + T       +  L+V T  R +  ++  +S   F P 
Sbjct: 172 RART----LTSATFVTQLEYARKRTGDYG--RWSLLTVRTWPRHEWRLLGRVSRREFRPV 225

Query: 199 PKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLHQ 252
           P+V S ++       P      L    ++ +  F     +L  SL+R       +     
Sbjct: 226 PRVDSGILRIERRERPLLPSAALGDYHRMVELGFSGVGGSLYASLRRAHRAGPLDAAFRA 285

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
           A ++ ++    ++ E +  +   L 
Sbjct: 286 ARLDRSVVVAYVTPEQWLTVFRTLR 310


>gi|320100239|ref|YP_004175831.1| ribosomal RNA adenine methylase transferase [Desulfurococcus
           mucosus DSM 2162]
 gi|319752591|gb|ADV64349.1| ribosomal RNA adenine methylase transferase [Desulfurococcus
           mucosus DSM 2162]
          Length = 278

 Score =  144 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 116/277 (41%), Gaps = 24/277 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S +L+ +L  + + P++ + QNF++D  +LK    +   LD     EIG G G LT  L 
Sbjct: 17  SWTLR-VLQSHGLKPRRRLSQNFIVDPALLKGFTRNVEYLDT---FEIGCGIGTLTMSLS 72

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
               R +I +E D +       + +     + ++  DA               +++ N+P
Sbjct: 73  RFVPR-LICVEIDWRLLE--AAVENIDAANVVLVNADATVYT-------PPSKQVVGNIP 122

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           Y+I + +    ++               Q++V ERITA      YGR+++L     +  +
Sbjct: 123 YHITSEI----LTGVARLNTVTRAVFTVQRDVAERITAAPGDRRYGRITILLNALFEIKV 178

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
                   F+P P V  ++I  +    P    +E+L+ +T+  F +RR+   + L+R+ G
Sbjct: 179 AGTYGSSSFYPEPGVEHSIIVMVRRA-PFNRDVEALEALTRAVFTQRRRIALRVLERVLG 237

Query: 247 ENL-----LHQAGIETNLRAENLSIEDFCRITNILTD 278
                    + + +    R   +  E +  +   L +
Sbjct: 238 VREDSPVHSYASRLLGGKRVYEVGWEVYLELARALRE 274


>gi|3800833|gb|AAC69328.1| rRNA methyltransferase PikR1 [Streptomyces venezuelae]
          Length = 336

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 22/260 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ +GQNFL D   ++ +       DG  V+EIG G G +T+ L+      V V+E D  
Sbjct: 17  RRELGQNFLQDDRAVRNLVTHVE-GDGRNVLEIGPGKGAITEELV-RSFDTVTVVEMDPH 74

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +   ++        R+ + Q D L     +  +      ++ N+P+ I T++L + + + 
Sbjct: 75  WAAHVRRKFEG--ERVTVFQGDFLDFRIPRDIDT-----VVGNVPFGITTQILRSLLEST 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            W    +S  L+ Q EV  +   +        L+       +  +   +    F P P+V
Sbjct: 128 NW----QSAALIVQWEVARKRAGRSGG---SLLTTSWAPWYEFAVHDRVRASSFRPMPRV 180

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GI 255
              V+       P        + +   +  F    + L + L+R   +          GI
Sbjct: 181 DGGVLTIRRRPQPLLPESASRAFQNFAEAVFTGPGRGLAEILRRHIPKRTYRSLADRHGI 240

Query: 256 ETNLRAENLSIEDFCRITNI 275
                 ++L++  +  +   
Sbjct: 241 PDGGLPKDLTLTQWIALFQA 260


>gi|28493170|ref|NP_787331.1| dimethyladenosine transferase [Tropheryma whipplei str. Twist]
 gi|28476210|gb|AAO44300.1| dimethyladenosine transferase [Tropheryma whipplei str. Twist]
          Length = 448

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 9/180 (5%)

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
             + +I DDALK+         +P  ++ANLPYNI   L+ + +      P   S T++ 
Sbjct: 262 GEVYLINDDALKLRALPI----TPKMLVANLPYNIAVPLIMHVLQQ---FPSIVSATIML 314

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           Q EV +RI A+  S   G ++    W      +  ++ HVF+P P V S ++ FI     
Sbjct: 315 QSEVADRICAKPPSRSAGAVTAKAAWFGHWKKVMKVARHVFYPIPGVDSVIVQFIRDEKS 374

Query: 215 I-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
                 E+   + ++AF KRRK LRQSL+ +  +     AGI+  LRAENLS+++F  + 
Sbjct: 375 DCEVLREATFSLIEDAFSKRRKMLRQSLRYI-PQADFVAAGIDPMLRAENLSVDNFMNLA 433



 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
          + +P K  GQ+F+ D NI  KI   +G   G  V+EIG G G LT  L    A  V  +E
Sbjct: 13 RFVPYKRFGQHFVTDPNICNKIVTLAGVAPGDCVLEIGPGFGALTVALAKAKA-TVCGVE 71

Query: 78 KDQQFFPIL 86
           D + F  L
Sbjct: 72 IDTRLFNAL 80


>gi|56807419|ref|ZP_00365386.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
           [Streptococcus pyogenes M49 591]
          Length = 136

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 7/139 (5%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M + + S + K +L  +    KK  GQNFL D NIL+KI +++     + VIEIG G G 
Sbjct: 1   MRIADYSVT-KAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGA 59

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD----FEKFFNIS 116
           LT+ L    A +V+  E D +  PIL D      N ++++  D LK D     ++F N  
Sbjct: 60  LTEFLAENAA-EVMAFEIDDRLVPILADTLRDFDN-VQVVNQDILKADLQTQIQQFKNPD 117

Query: 117 SPIRIIANLPYNIGTRLLF 135
            PI+++ANLPY I T +L 
Sbjct: 118 LPIKVVANLPYYITTPILM 136


>gi|256395256|ref|YP_003116820.1| rRNA (adenine-N(6)-)-methyltransferase [Catenulispora acidiphila
           DSM 44928]
 gi|256361482|gb|ACU74979.1| rRNA (adenine-N(6)-)-methyltransferase [Catenulispora acidiphila
           DSM 44928]
          Length = 263

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 105/263 (39%), Gaps = 22/263 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ +GQNFL D  ++ +I           +IE+GAG G LT  L  L  R V  +E D +
Sbjct: 17  RQELGQNFLADPALIAEIQRLVREQTQGPIIELGAGDGALTGPLSRLN-RPVTALEIDPR 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L++       R ++++ D L+  F       +   I+ N+P+++ T ++   +S  
Sbjct: 76  RVRRLQERFG---GRADVVRADVLRYRFPA-----AEHTIVGNIPFHLTTAIIRKLLSER 127

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                W S  L+ Q EV  R      +     L+          ++  I    F P P V
Sbjct: 128 ----GWSSAVLIVQWEVARRRAGVGGA---SMLTASWWPWYDFGLVRRIPASAFRPVPSV 180

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGI 255
            + ++       P+       +   ++ F    + + + + R G          +  + I
Sbjct: 181 DAGLLTMWRRPVPLVEERSGYQTFVKQVFQAPGRGVEEMIARTGRVRRAELREWVRWSRI 240

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
                 ++L+ ED+ R+  ++ D
Sbjct: 241 PVRALPKDLAAEDWARLWELVRD 263


>gi|159039573|ref|YP_001538826.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora arenicola
           CNS-205]
 gi|157918408|gb|ABV99835.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora arenicola
           CNS-205]
          Length = 269

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 105/267 (39%), Gaps = 29/267 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + QNFL+D   + ++  ++       ++E+GAG G LT+ LL   +R++I  E D  
Sbjct: 15  RRVLSQNFLVDPAAVDRLIRAARPDPNRLLLEVGAGRGQLTR-LLAARSRRLIAYEVDPV 73

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L    +  P  +   + D L     +      P  ++ N+P+++ + ++   ++A 
Sbjct: 74  AGAELARTCADLP-TVTCRRADFLTAPPPRV-----PYDVVGNIPWSLTSAVVRWCLAA- 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                  + TLL Q E   + +       + RL+VL        +   +    F P P+V
Sbjct: 127 ---SGLRAATLLTQLEYARKRSGAYG--RWTRLTVLNWPEFSWRLAGRVPRTAFRPVPRV 181

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            + ++       P      L + +++ +  F     +L  SL R      L  A     L
Sbjct: 182 NAGILRIERRREPLLPGAALPAYRRMVELGFDGAGGSLAASLGRRYPRARLTAA-----L 236

Query: 260 RAENLS---------IEDFCRITNILT 277
           RA  L           E +  +  +L 
Sbjct: 237 RATRLDPATPVGHVWPEQWLVLFRLLR 263


>gi|28572717|ref|NP_789497.1| dimethyladenosine transferase [Tropheryma whipplei TW08/27]
 gi|28410849|emb|CAD67235.1| dimethyladenosine transferase [Tropheryma whipplei TW08/27]
          Length = 418

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 9/180 (5%)

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
             + +I DDALK+         +P  ++ANLPYNI   L+ + +      P   S T++ 
Sbjct: 232 GEVYLINDDALKLRALPI----TPKMLVANLPYNIAVPLIMHVLQQ---FPSIVSATIML 284

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           Q EV +RI A+  S   G ++    W      +  ++ HVF+P P V S ++ FI     
Sbjct: 285 QSEVADRICAKPPSRSAGAVTAKAAWFGHWKKVMKVARHVFYPIPGVDSVIVQFIRDEKS 344

Query: 215 I-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRIT 273
                 E+   + ++AF KRRK LRQSL+ +  +     AGI+  LRAENLS+++F  + 
Sbjct: 345 DCEVLREATFSLIEDAFSKRRKMLRQSLRYI-PQADFVAAGIDPMLRAENLSVDNFMNLA 403



 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
          + +P K  GQ+F+ D NI  KI   +G   G  V+EIG G G LT  L    A  V  +E
Sbjct: 13 RFVPYKRFGQHFVTDPNICNKIVTLAGVAPGDCVLEIGPGFGALTVALAKAKA-TVCGVE 71

Query: 78 KDQQFFPIL 86
           D + F  L
Sbjct: 72 IDTRLFNAL 80


>gi|297156444|gb|ADI06156.1| rRNA-adenine-N6-methyltransferase [Streptomyces bingchenggensis
           BCW-1]
          Length = 277

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 16/236 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            ++ + QNFL+D   + ++  ++       ++E+G G G LT+ L     R++I  E D+
Sbjct: 23  ARRTLSQNFLVDPAAVARVVRAARPRHDGLLVEVGMGKGALTEALAPRC-RELIGYEIDR 81

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              P L+   + H + + ++  D L            P  ++ N+PY   + ++   + A
Sbjct: 82  HLIPGLRLRLAAHSH-VRVVHQDFLTARPPL-----EPFAVVGNVPYARTSEIVDWCLRA 135

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P   S T L Q E   + T       +  L+V +       +   +    F P P+
Sbjct: 136 ----PRLTSATFLTQLEYARKRTGDYG--RWSLLTVRSWPDFDWQLCGRVPRGAFRPVPR 189

Query: 201 VTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           V S ++       P+        + +++ +  F     TL  SL+R      L +A
Sbjct: 190 VDSGILRLTRRPRPLLTGAAERAAYERMVELGFSGVGGTLYASLRRAHPARRLDRA 245


>gi|115400783|ref|XP_001215980.1| hypothetical protein ATEG_06802 [Aspergillus terreus NIH2624]
 gi|114191646|gb|EAU33346.1| hypothetical protein ATEG_06802 [Aspergillus terreus NIH2624]
          Length = 287

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 11/189 (5%)

Query: 82  FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               +       P   RL++I  D +K +   F         I+N PY I + L F  ++
Sbjct: 1   MAAEVTKRVQGTPAQKRLDVILGDFMKTELPYF------DVCISNTPYQISSPLTFKLLA 54

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P       L+FQ+E   R+ A+     Y RLSV      K   +  +  + F P P
Sbjct: 55  TTPAP---RVCILMFQREFALRLFAKPGDKLYSRLSVNAQMWAKIDHIMKVGKNNFKPPP 111

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            V S+V+  +P         E    + +  F ++ KT+R S         L +A   T  
Sbjct: 112 LVDSSVVRLVPKNPRPQINYEEWDGLLRICFVRKNKTIRSSFLGKHTVMDLLEANYRTWC 171

Query: 260 RAENLSIED 268
              ++ +ED
Sbjct: 172 AQNDIPVED 180


>gi|213581623|ref|ZP_03363449.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 152

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 14/165 (8%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRI 121
           + +      K+ VIE D+     L+        +L I Q DA+ ++F +    +  P+R+
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRV 110

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             NLPYNI T L+F+  S   +      +  + QKEV  R+ A  
Sbjct: 111 FGNLPYNISTPLMFHLFS---YTDAIADMHFMLQKEVVNRLVAGP 152


>gi|171694431|ref|XP_001912140.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947164|emb|CAP73969.1| unnamed protein product [Podospora anserina S mat+]
          Length = 386

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 15/183 (8%)

Query: 75  VIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            ++ D +    +       P   +LE+I  D +K+       +     +I+N PY I + 
Sbjct: 77  SVDIDPRMGAEVTKRVQGTPLAKKLEVILGDVIKMP-----EMPPCDALISNTPYQISSP 131

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           L+F  ++    P       L+FQ+E  +R+ A+     Y RLSV   +      +  +  
Sbjct: 132 LIFKMLAMPNPP---RVAVLMFQREFAKRLVAKPGDALYSRLSVNVNFWATCKHIMKVGK 188

Query: 193 HVFFPSPKVTSTVIHFIPH--LNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
             F P PKV S V+   P           +    + + AF ++ KTL  S      + +L
Sbjct: 189 QNFKPPPKVESDVVRIEPLIGSARPNIAFDEFDGLLRIAFNRKNKTLNASF---AIKEVL 245

Query: 251 HQA 253
              
Sbjct: 246 AMC 248


>gi|54024690|ref|YP_118932.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia
           farcinica IFM 10152]
 gi|54016198|dbj|BAD57568.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia
           farcinica IFM 10152]
          Length = 269

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 15/224 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
             QNFL D +I ++I  S+G   G  V+EIG G G LT  LL + A +V+  E D ++  
Sbjct: 17  FSQNFLADADIARRIVRSAGVGAGDLVLEIGPGDGMLTAQLLGV-AGRVLAYEIDARYAA 75

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            L+   + H  R+     D              P  ++AN+P+   T ++   ++A    
Sbjct: 76  RLQARYA-HDPRIHCYHKDF-----RDAPLPDEPFGVVANVPFGSTTDIVRWCLAARQ-- 127

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
               S TLL Q+E   + T       + +L+V     T   +   I    F P P+V   
Sbjct: 128 --LTSATLLTQREFARKHTGDYG--RWSKLTVTHWPTTTMHLGARIDRRHFRPVPRVDGA 183

Query: 205 VIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           ++H     +P+         +++ +  F     +L  +L     
Sbjct: 184 LLHLRRRPDPLLAGAAARDYRRLVELGFTGVGGSLAATLATAFP 227


>gi|289670944|ref|ZP_06492019.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 152

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            KK +GQ+FL D   + +I ++     G  ++EIG G G +T  LL      + VIE D+
Sbjct: 9   AKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLL-RKHGALTVIEFDR 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L + ++     L II  D L VDF    +  +PIR++ NLPYNI + +LF+ +  
Sbjct: 68  DLIAPLTEAAAPI-GALSIIHRDVLSVDFTALAD-GTPIRLVGNLPYNISSPILFHALDH 125

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSP 169
                    +  + QKEV +R+ A   SP
Sbjct: 126 AAA---VADMHFMLQKEVVDRMAAGPGSP 151


>gi|329944089|ref|ZP_08292348.1| ribosomal RNA adenine dimethylase family protein [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328530819|gb|EGF57675.1| ribosomal RNA adenine dimethylase family protein [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 267

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 102/271 (37%), Gaps = 26/271 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D +I+  I     + +G  ++EIG G G LT  L  LG R V  IE D +
Sbjct: 8   RHEYGQNFLTDQSIIATITRLVVATEG-PIVEIGPGDGALTIPLARLG-RPVTAIEIDAR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L +     P+ ++++ DD L      +     P  ++ NLP++  T +L   + A 
Sbjct: 66  LARCLSERL---PSHVDVVSDDFLIYRLPTY-----PHVLVGNLPFHQTTAMLRRMLHA- 116

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W +  LL Q EV  R      +     ++       + T+   +    F P P V
Sbjct: 117 ---PVWTNAILLVQWEVARRRAGLGGATM---MTAQWAPWFEFTLHARVPSRAFTPRPGV 170

Query: 202 TSTVIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRL-------GGENLLHQ 252
              ++      +P+           +    +      L Q L R          +  L +
Sbjct: 171 DGGILTIYRREHPLLPSTQRRQFHALVHRVYTGPGCGLAQILARNTALGSARAAQAWLSR 230

Query: 253 AGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            G+      ++L +E +  +       Q  A
Sbjct: 231 HGMTATGLPKDLPVEAWVDLFKATAHRQRNA 261


>gi|225680654|gb|EEH18938.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb03]
          Length = 291

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 19/193 (9%)

Query: 82  FFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               +       P   RLE++  D +K D   F         I+N PY I + L F  ++
Sbjct: 1   MAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQISSPLTFKLLA 54

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +  P       L+FQ+E   R+ A+     Y RLSV      +   +  +  + F P P
Sbjct: 55  TNPAP---RVCILMFQREFAMRLFAKPGDKLYNRLSVNAQMWARIDHIMKVGKNNFKPPP 111

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            V S+V+  +P         +    + + AF ++ KT+R S   LG  ++L    +E+N 
Sbjct: 112 AVESSVVRIVPKNPRPQISYDEWDGLLRIAFVRKNKTIRSSF--LGTTSVLD--MLESNY 167

Query: 260 RA----ENLSIED 268
           R      N+ +ED
Sbjct: 168 RTWCAQNNIPVED 180


>gi|854706|gb|AAC37034.1| rRNA methyltransferase [Bacteroides thetaiotaomicron]
          Length = 244

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 22/253 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK      F   +P +I  ++PYNI T ++   +   +   
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K + +   +         L++L       +++  I  + F P PKV ST+
Sbjct: 123 SYLIVEYGFAKMLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264
           I       P     +  KK   E F    K + +  ++L  +N  ++A     +    N+
Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKALKHARIYDINNI 227

Query: 265 SIEDFCRITNILT 277
           S E F  + N   
Sbjct: 228 SFEQFVSLFNSYK 240


>gi|145596181|ref|YP_001160478.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora tropica
           CNB-440]
 gi|145305518|gb|ABP56100.1| rRNA (adenine-N(6)-)-methyltransferase [Salinispora tropica
           CNB-440]
          Length = 265

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 107/267 (40%), Gaps = 29/267 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++ + QNFL+D   + ++  ++       ++E+GAG G LT+ LL   +R +I  E D  
Sbjct: 15  RRVLSQNFLVDPAAVNRLTRAAQPDPDRLLLEVGAGRGQLTR-LLAARSRHLIAYEVDPV 73

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L    +  P  +   Q D L     +     +P  ++ N+P+++ + ++   ++A 
Sbjct: 74  NAAELARSCAGLP-TVTCRQADFLTASPPR-----APFDVVGNIPWSLTSAVVRWCLAA- 126

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P   + TLL Q E   + +       + RL+V +       +   +    F P+P+V
Sbjct: 127 ---PGLRAATLLTQLEYARKRSGDYG--RWTRLTVRSWPEFSWRLAGRVPRTAFRPTPRV 181

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
            + ++       P      L + +++ +  F     +L  SL R      +  A     L
Sbjct: 182 DAGILRIERRREPLLPVAALPAYRRMVELGFDGVGGSLAASLGRRHPRVRVAAA-----L 236

Query: 260 RAENLS---------IEDFCRITNILT 277
           RA  L           E +  +  +L 
Sbjct: 237 RATRLDPAPPVGQVWPEQWLALFRLLR 263


>gi|134285024|gb|ABO69573.1| rRNA methyltransferase [pGERM gene disruption vector]
          Length = 244

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 22/253 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAGLVKRC-NFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK      F   +P +I  ++PYNI T ++   +   +   
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K + +   +         L++L       +++  I  + F P PKV ST+
Sbjct: 123 SYLIVEYGFAKMLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264
           I       P     +  KK   E F    K + +  ++L  +N  ++A     +    N+
Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKALKHARIYDINNI 227

Query: 265 SIEDFCRITNILT 277
           S E F  + N   
Sbjct: 228 SFEQFVSLFNSYK 240


>gi|33468439|emb|CAD89787.1| ErmG [Bacteroides ovatus]
          Length = 244

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 104/255 (40%), Gaps = 26/255 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK      F   +P +I  ++PYNI T ++   +   + P 
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSAPI 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K + +   +         L++L       +++  I  + F P PKV S +
Sbjct: 123 SYLIVEYGFAKMLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR---AE 262
           I       P     +  KK   E F    K + +  ++L  +N  ++A      R     
Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKAL--KYARIYDIN 225

Query: 263 NLSIEDFCRITNILT 277
           N+S E F  + N   
Sbjct: 226 NISFEQFVSLFNSYK 240


>gi|256784390|ref|ZP_05522821.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces
           lividans TK24]
 gi|289768269|ref|ZP_06527647.1| lincomycin resistance methylase [Streptomyces lividans TK24]
 gi|153346|gb|AAA26779.1| lincomycin resistance methylase [Streptomyces lividans]
 gi|289698468|gb|EFD65897.1| lincomycin resistance methylase [Streptomyces lividans TK24]
          Length = 260

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 113/267 (42%), Gaps = 28/267 (10%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           + + QNFL D    +++A  +    G    ++E+GAG G LT+ L    +R++   E D 
Sbjct: 9   RTLSQNFLADRATAERVARLAVPDRGRPPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +  P L+   ++ P+ + ++  D L     +     +P  +  N+P++    ++   ++A
Sbjct: 68  RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSRTADIVDWCLTA 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197
               P     TLL Q E      A+K +  YGR   L+VLT  R +  ++  +    F P
Sbjct: 122 ----PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250
           +P+V + ++        +            + +  F     +L  SL+R       +   
Sbjct: 173 APRVDAGILRIERRPTALLTGAAARRDWADLVELGFSGVGGSLHASLRRAHSRRRVDAAF 232

Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277
             A ++  +    ++ + + R+   LT
Sbjct: 233 RAARLDPGVLVGEVAPDRWLRLHEELT 259


>gi|224026271|ref|ZP_03644637.1| hypothetical protein BACCOPRO_03027 [Bacteroides coprophilus DSM
           18228]
 gi|224019507|gb|EEF77505.1| hypothetical protein BACCOPRO_03027 [Bacteroides coprophilus DSM
           18228]
          Length = 244

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 22/253 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK      F   +P +I  ++PYNI T ++   +   +   
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K + +   +         L++L       +++  I  + F P PKV S +
Sbjct: 123 SYLIVEYGFAKGLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264
           I       P     +  KK   E F    K + +  ++L  +N  ++A     +    N+
Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKALKHARIYDINNI 227

Query: 265 SIEDFCRITNILT 277
           S E F  + N   
Sbjct: 228 SFEQFVSLFNSYK 240


>gi|84996089|ref|XP_952766.1| rDNA dimethyladenosine transferase [Theileria annulata strain
           Ankara]
 gi|65303763|emb|CAI76140.1| rDNA dimethyladenosine transferase, putative [Theileria annulata]
          Length = 569

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 130/379 (34%), Gaps = 135/379 (35%)

Query: 26  GQNFLLDLNILKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLG----------- 69
           G NF+ DLN++ K+  S       S DG  VIE+G G G+LT +L               
Sbjct: 138 GGNFITDLNLMYKMCNSLQHYSEDSGDGSQVIELGCGIGSLTHILYKKYKNMTGTVLDFY 197

Query: 70  --------------------------------------ARKVIVIEKDQQFFPILKDISS 91
                                                 +R    IE D +    L     
Sbjct: 198 NYIAIRPKGTSNYTAIHFKYLVSSLSRSTLCNHRISSLSRSTKRIEIDSRAVSQLSRTLP 257

Query: 92  QHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
                L II  D L++D+++  N I   + II NLP+ I +++L   +    +  + +  
Sbjct: 258 ----NLNIINQDVLQMDYKELSNRIGKKLWIIGNLPFYITSQILMCLLD---YRKYIDRA 310

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
            +  Q EV ER+ A   S  Y  LSVLT   T   ++F +S +VF+P PKV S  IH   
Sbjct: 311 VITAQWEVAERLVAPVGSKQYSILSVLTQMFTTPKILFKLSNNVFYPKPKVQSACIHLDF 370

Query: 211 ----------------------------------------HLNPIPCCL----------- 219
                                                      P                
Sbjct: 371 NTSISTKSNSIEGKGANSTAMECTSTNSTNTEDTSNINNIKETPFGVKEVPFGDGRGPDT 430

Query: 220 --ESLKKI------TQEAFGKRRKTLRQSLKRL-------GGENLLHQAGIETNLRAENL 264
             E LK +       +  F ++RK L+ SL  L         EN+L        LR +NL
Sbjct: 431 VMEELKNVMLLREILRITFNQKRKKLKTSLANLLNKYNIKLPENVLE-------LRPQNL 483

Query: 265 SIEDFCRITNILTDNQDIA 283
           S  +F  +TN +  + ++ 
Sbjct: 484 SPSNFITLTNYIHKHINLG 502


>gi|157363926|ref|YP_001470693.1| ribosomal RNA adenine methylase transferase [Thermotoga lettingae
           TMO]
 gi|157314530|gb|ABV33629.1| ribosomal RNA adenine methylase transferase [Thermotoga lettingae
           TMO]
          Length = 248

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 103/250 (41%), Gaps = 26/250 (10%)

Query: 25  MGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            GQ+FL D +   K+ E     +    V+EIGAG G +T  LL  G  +V+  E DQ+  
Sbjct: 4   YGQHFLNDKSTAIKLVELISHDVSNRRVVEIGAGKGFITGFLLQAG-FQVLAYEIDQKLA 62

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L    +     L++   D L+   E+  NI+     I ++PY I ++++   I     
Sbjct: 63  KQLCQKFA--SPGLKVYVKDFLQSTPEEIENIN---LCIGSIPYQISSKIIIKLIELG-- 115

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              ++ + L+ QKE  E++ A+     Y  ++VL         + ++    F P+PKV S
Sbjct: 116 ---FQKVVLIVQKEFAEKLVAEPGEKRYSFITVLAQSFYDVQKVSNLPKSCFSPAPKVDS 172

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            ++      N +   ++      ++ F    K +   +     +            R   
Sbjct: 173 AILSMC--RNHVSIKIDEYILFLRKIFVSPNKMVHNMIHSAIKK------------RVRE 218

Query: 264 LSIEDFCRIT 273
           L  ++F R+ 
Sbjct: 219 LPADEFLRLF 228


>gi|294936255|ref|XP_002781681.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239892603|gb|EER13476.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 913

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 13/206 (6%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDDALK 106
             TV+E+G G GN++  L  L A +V+ +E ++     ++  +  +  + +E++  D  +
Sbjct: 546 TDTVLEMGPGTGNMSVKLSEL-ANRVVAMEVNEGLAKEVERRAEMKGASNMEVVTGDFKR 604

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
           +   +F        +IANLPY++ T  L   +        + +  ++ Q E G+++ A  
Sbjct: 605 LALPRF------DVVIANLPYHLATGFLLKLMGHP-----FRTGIIMLQHEFGKKLLADP 653

Query: 167 NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
               Y RLS+      KA  +  +    FFP P+ TS +I   P +            + 
Sbjct: 654 GEKIYSRLSLNMRMFFKAERICKVPGRAFFPQPQTTSVIIRLTPRVPAPKVDFAEWDAMI 713

Query: 227 QEAFGKRRKTLRQSLKRLGGENLLHQ 252
           + AF ++ + + +  KRL   N+L  
Sbjct: 714 RIAFFRKNQDVFKMFKRLTVLNMLEH 739


>gi|168064371|ref|XP_001784136.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664336|gb|EDQ51060.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 274

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 89/218 (40%), Gaps = 31/218 (14%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSL--------DGITVIEIGAGPGNLTQMLLTL 68
            +I  +K  GQ+ L +  + + + + +  L          ++++      GNLT  LL +
Sbjct: 70  QEIQFQKSKGQHILKNPLLRRSLFKKTSLLFSTIRVSYADVSLL-----LGNLTMKLLEV 124

Query: 69  GARKVIVIEKDQQFFPILKDISSQHP--NRLEI-----IQDDALKVDFEKFFNISSPIRI 121
              KVI +E D +    +       P  N+L++     IQ   LK +   F         
Sbjct: 125 C--KVIAVELDPRMVLEVTRRVQGTPCANKLQVWMLAVIQCYILKTELPYF------DVC 176

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +AN+PY I + + F  +S    PP      +LFQ+E  + + AQ     + RLS  T   
Sbjct: 177 VANVPYMISSPITFKLLS---HPPLVRCAVILFQEEFAQHLVAQPGDSLFCRLSANTQLL 233

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
            +   +  +  +   P PKV S+V+   P     P   
Sbjct: 234 ARVFHLLKVGKNNLRPPPKVDSSVVRIEPRNPLPPINF 271


>gi|127197|sp|P06571|ERMG_BACSH RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|142884|gb|AAA22419.1| rRNA methyltransferase [Lysinibacillus sphaericus]
          Length = 244

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 22/253 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK      F   +P +I  ++PYNI T ++   +   +   
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K + +   +         L++L       +++  I  + F P PKV S +
Sbjct: 123 SYLIVEYGFAKRLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264
           I       P     +  KK   E F    K + +  ++L  +N  ++A     +    N+
Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKALKHARIYDINNI 227

Query: 265 SIEDFCRITNILT 277
           S E F  + N   
Sbjct: 228 SFEQFVSLFNSYK 240


>gi|307213901|gb|EFN89152.1| Dimethyladenosine transferase 1, mitochondrial [Harpegnathos
           saltator]
          Length = 294

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 26/238 (10%)

Query: 66  LTLGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQDDALKVDFEKFF--------- 113
           +     +++++EKD++F P   IL D  +    +++II DD ++   E  F         
Sbjct: 1   MKRLPERIVLVEKDKRFEPTLDILADSFAMINRKVDIIFDDIMRAHIESLFPKEKKMNWN 60

Query: 114 NISSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNS 168
           +    + +I NLP+N+ T L+  W+         W      +TL FQKEV ER+ A ++S
Sbjct: 61  DKPPDLFLIGNLPFNVSTPLIIQWLHSIAERRGAWAFGRTKMTLTFQKEVAERLVAPESS 120

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQ 227
               RLSV+    T   + F I  HVF P P V   V+ F P   P      +  +KI +
Sbjct: 121 EQRCRLSVMAQAWTFPVLRFVIPGHVFVPQPDVDVGVVSFTPLTKPCTQHDFKFFEKIVR 180

Query: 228 EAFGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILT 277
             F  R+K   + ++ L   +        +   + ++  +R   L++ D  R+     
Sbjct: 181 HVFSFRQKYSIRCVETLFPLHCRKELAMMMYKLSDLDPTIRPTQLTVNDIDRLATAYK 238


>gi|269124773|ref|YP_003298143.1| rRNA (adenine-N(6)-)-methyltransferase [Thermomonospora curvata DSM
           43183]
 gi|268309731|gb|ACY96105.1| rRNA (adenine-N(6)-)-methyltransferase [Thermomonospora curvata DSM
           43183]
          Length = 313

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 95/264 (35%), Gaps = 21/264 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           ++ + QNFL D   + +           G  V+E+GAG G +T+ L    A  VI  E D
Sbjct: 19  RRSLSQNFLADPAAIGRYVRVVTRDLPGGALVVEVGAGDGRITRALAAH-AGAVIAYEID 77

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 L        N +  +  D L          + P  +  ++PY   +R++     
Sbjct: 78  PVLAGRLHAACRPLGN-VRCVPGDFL-----SARPPARPFHLTGSIPYAATSRIMDW--- 128

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                P   S TL+ Q E   + T       + RL+VLT       +   I    F P P
Sbjct: 129 -ALAAPSLASATLITQLEYALKRTG--GYRRWSRLTVLTWPVFTWRLAGRIDRRAFRPVP 185

Query: 200 KVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQA 253
           +V S ++       P   P      ++  +  FG R  TL  SL+        +     A
Sbjct: 186 RVDSAILRIERRERPLLPPGLPAGYRRCVEIGFGGRGGTLHASLRGAYPRSRVDAAFEAA 245

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           G+  +     +  + + R+   L 
Sbjct: 246 GLGRDTVVAYVHPDQWVRLFKALR 269


>gi|153006650|ref|YP_001380975.1| dimethyladenosine transferase [Anaeromyxobacter sp. Fw109-5]
 gi|152030223|gb|ABS27991.1| dimethyladenosine transferase [Anaeromyxobacter sp. Fw109-5]
          Length = 356

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 12/167 (7%)

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
           I ++ NLPY++ + +LF+ +              L Q+EV ER+ A   S  +G  SVL 
Sbjct: 191 IAVVGNLPYHLTSPILFSLLDQLEH---VSRAVFLLQREVAERLAAPPGSRDWGVASVLL 247

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLKKITQEAFGKRRK 235
                 ++   +    F P P V S V+  I                +++ +  F +RRK
Sbjct: 248 QREADVSVERIVPSGAFVPPPNVDSAVLCAIFRPPGEGLAVADPGRFRRLVKAGFAQRRK 307

Query: 236 TLRQSLK--RLGGEN----LLHQAGIETNLRAENLSIEDFCRITNIL 276
           TL  +L+  ++  E      L  AG++   R E L++E++  +   L
Sbjct: 308 TLGNALRAGKVVPEEALSRALQAAGLDPGRRGETLTVEEWAALDRAL 354



 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            S + +L  Y +  KK  GQNFL D  IL  IA  +    G  V+E+GAG G+LT  LL 
Sbjct: 13  PSPRALLDKYGLRAKKSWGQNFLGDEAILDDIARLAAPRPGDPVVELGAGLGHLTARLLA 72

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
            GA +VI +E+D+    +L+    +  +RL +++ DA ++D+ +  
Sbjct: 73  RGA-EVIAVERDRDMVRVLR---GELGDRLRLLEADAARLDYGEVA 114


>gi|124806998|ref|XP_001350883.1| apicoplast dimethyladenosine synthase, putative [Plasmodium
           falciparum 3D7]
 gi|23497013|gb|AAN36563.1| apicoplast dimethyladenosine synthase, putative [Plasmodium
           falciparum 3D7]
          Length = 639

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 25/249 (10%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            DG  VIE+G G G +++ L     + +  IE D +   I+           + I DD L
Sbjct: 386 NDGNGVIELGCGLGQISKYLF-SKYKNMTGIEIDSRALSIISRTMPG----FDFIHDDVL 440

Query: 106 KVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           ++++++   N  + + II NLP+ I +++LF  +       + E   +  Q EVGERI A
Sbjct: 441 QINYKELSINKKTKLTIIGNLPFYITSQILFCLLDFHK---YIEQAIVTIQYEVGERIVA 497

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-----IPCCL 219
           + N  +Y  LS+L    T   ++F I    F+P PKV + V+  I   +      I C L
Sbjct: 498 KPNQKNYSILSILFHLFTYPYLLFKIPSKAFYPVPKVQAAVMKIIFKNHESYYKHINCNL 557

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET------NLRAENLSIEDFCRIT 273
             LKKI + +F +RR        +   + LL Q  I        NLR + L    F  +T
Sbjct: 558 LFLKKILKYSFQQRR-----KKLKSSLKKLLIQYNIPKLPEQFINLRPQQLYPYQFVELT 612

Query: 274 NILTDNQDI 282
           N+L   Q+ 
Sbjct: 613 NLLFPLQNY 621



 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG 44
           LKT L   +  PK+ +GQN+L D NI+KK+  +  
Sbjct: 188 LKTKLPSKEFKPKRSLGQNYLKDTNIIKKMISAIE 222


>gi|317480612|ref|ZP_07939700.1| ribosomal RNA adenine dimethylase [Bacteroides sp. 4_1_36]
 gi|316903238|gb|EFV25104.1| ribosomal RNA adenine dimethylase [Bacteroides sp. 4_1_36]
          Length = 244

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 26/255 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK      F   +P +I  ++PYNI T ++   +   +   
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K + +   +         L++L       +++  I  + F P PKV S +
Sbjct: 123 SYLIVEYGFAKMLLDTNRS---------LALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR---AE 262
           I       P     +  KK   E F    K + +  ++L  +N  ++A      R     
Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKAL--KYARIYDIN 225

Query: 263 NLSIEDFCRITNILT 277
           N+S E F  + N   
Sbjct: 226 NISFEQFVSLFNSYK 240


>gi|255690866|ref|ZP_05414541.1| rRNA adenine N-6-methyltransferase [Bacteroides finegoldii DSM
           17565]
 gi|260623500|gb|EEX46371.1| rRNA adenine N-6-methyltransferase [Bacteroides finegoldii DSM
           17565]
          Length = 244

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 101/255 (39%), Gaps = 26/255 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK      F   +P +I  N+PYNI T ++   +   +   
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGNIPYNISTNIIRKIVFESSATI 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +          + E   A+        L++L       +++  I  + F P PKV S +
Sbjct: 123 SYL---------IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSAL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR---AE 262
           I       P     +  KK   E F    K + +  ++L  +N  ++A      R     
Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKAL--KYARIYDIN 225

Query: 263 NLSIEDFCRITNILT 277
           N+S E F  + N   
Sbjct: 226 NISFEQFVSLFNSYK 240


>gi|21224418|ref|NP_630197.1| antibiotic resistance rRNA adenine methyltransferase [Streptomyces
           coelicolor A3(2)]
 gi|13276816|emb|CAC33934.1| putative antibiotic resistance rRNA adenine methyltransferase
           [Streptomyces coelicolor A3(2)]
          Length = 260

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 113/267 (42%), Gaps = 28/267 (10%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDG--ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           + + QNFL D    +++A  +    G    ++E+GAG G LT+ L    +R++   E D 
Sbjct: 9   RTLSQNFLADRATAERVAHLAVPDRGRRPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +  P L+   ++ P+ + ++  D L     +     +P  +  N+P++    ++   ++A
Sbjct: 68  RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSRTADIVDWCLTA 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197
               P     TLL Q E      A+K +  YGR   L+VLT  R +  ++  +    F P
Sbjct: 122 ----PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250
           +P+V + ++        +            + +  F     +L  SL+R       +   
Sbjct: 173 APRVDAGILRIERRPTALLTGAAARRDWADLVELGFSGVGGSLHASLRRAHSRRRVDAAF 232

Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277
             A ++  +    ++ + + R+   LT
Sbjct: 233 RAARLDPGVLVGEVAPDRWLRLHEELT 259


>gi|228994|prf||1815179A rRNA methyltransferase
          Length = 260

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 113/267 (42%), Gaps = 28/267 (10%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           + + QNF+ D    +++A  +    G    ++E+GAG G LT+ L    +R++   E D 
Sbjct: 9   RTLSQNFIADRATAERVARLAVPDRGRPPLLLEVGAGNGALTEPLARR-SRELHAYEIDP 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +  P L+   ++ P+ + ++  D L     +     +P  +  N+P++    ++   ++A
Sbjct: 68  RLVPGLRARFARSPH-VHVVAGDFLTARPPR-----TPFAVAGNVPFSRTADIVDWCLTA 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197
               P     TLL Q E      A+K +  YGR   L+VLT  R +  ++  +    F P
Sbjct: 122 ----PGLTDATLLTQLEY-----ARKRTGDYGRWTLLTVLTWPRHEWRLVGRVGRSRFCP 172

Query: 198 SPKVTSTVIHFIPHLNPI---PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLL 250
           +P+V + ++        +            + +  F     +L  SL+R       +   
Sbjct: 173 APRVDAGILRIERRPTALLTGAAARRDWADLVELGFSGVGGSLHASLRRAHSRRRVDAAF 232

Query: 251 HQAGIETNLRAENLSIEDFCRITNILT 277
             A ++  +    ++ + + R+   LT
Sbjct: 233 RAARLDPGVLVGEVAPDRWLRLHEELT 259


>gi|296138265|ref|YP_003645508.1| rRNA (adenine-N(6)-)-methyltransferase [Tsukamurella paurometabola
           DSM 20162]
 gi|296026399|gb|ADG77169.1| rRNA (adenine-N(6)-)-methyltransferase [Tsukamurella paurometabola
           DSM 20162]
          Length = 253

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 93/254 (36%), Gaps = 38/254 (14%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D  I+  I       DG  ++EIG G G LT  L  LG R + V+E D++
Sbjct: 8   RHEHGQNFLTDRRIIASILNIIAESDG-PILEIGPGAGALTVPLANLG-RPLTVVEIDEK 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +   L+           I+  D L+           P  ++ NLP+++ T +L   + A 
Sbjct: 66  YVHALRRTRLDA----TIVHGDFLRHRLPD-----EPATVVGNLPFHLTTAILRKLLHA- 115

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMMFDISPHVFFPSP 199
              P W    L+ Q EV  R      S       +   W    +  ++  +    F P P
Sbjct: 116 ---PHWTDAVLITQWEVARRRAGVGGSTL-----MTAQWLPWYEFRLIRRLPATAFTPRP 167

Query: 200 KVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257
            V + ++      +P        +        F  R + L   L           AGI  
Sbjct: 168 GVDAGLLTVTRRPDPLMPWSARRAYAAFAHAVFTGRGRGLAAIL-----------AGITR 216

Query: 258 NLRAENLSIEDFCR 271
             RA   ++E +  
Sbjct: 217 RDRA---TVERWVA 227


>gi|297561218|ref|YP_003680192.1| rRNA (adenine-N(6)-)-methyltransferase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845666|gb|ADH67686.1| rRNA (adenine-N(6)-)-methyltransferase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 266

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 14/207 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++   QNFL D    +++   SG      V+E+G G G LT+ L    AR+V+  E D +
Sbjct: 16  RRRFSQNFLADPGAARRVVAVSGIGPADLVVEVGPGEGALTRFLAP-AARRVLAYEIDPR 74

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L     +  + + +++ D  +V   +         ++ N+PY     ++   + A 
Sbjct: 75  LAERLSARYREPASGVRVVRADFTRVRPPR-----GEFHLVGNIPYARTADIVRWCLDAR 129

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                  S TL+ Q E   + T       + RL+VLT      ++   I    F P P+V
Sbjct: 130 ----GLASATLVTQLEYARKRTGGFG--RWSRLTVLTWPEWSWSLAGRIDRQRFRPVPRV 183

Query: 202 TSTVIHFIPHLNPI--PCCLESLKKIT 226
            S ++       P+  P  +   +++ 
Sbjct: 184 DSGILVLRRRRTPLVDPGRMNGYRRLV 210


>gi|271965962|ref|YP_003340158.1| rRNA (adenine-N(6)-)-methyltransferase [Streptosporangium roseum
           DSM 43021]
 gi|270509137|gb|ACZ87415.1| rRNA (adenine-N(6)-)-methyltransferase [Streptosporangium roseum
           DSM 43021]
          Length = 275

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 17/223 (7%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             ++ + QNF++D + + +I E++G      V+E GAG G LT+ L      +V+  E D
Sbjct: 28  QARRTLSQNFIVDPDAVARIVEAAG--PHDLVLEPGAGEGVLTRALAGTCG-QVVGYEVD 84

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 L   +     R+ +++ D L            P  ++ N+PY+I ++++   + 
Sbjct: 85  PLLAGRLAARTRD-DARIRVVRGDFL-----AARAPREPFAVVGNIPYSITSKIVDWCLR 138

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           A    P   S TL  Q E   + T       +  L+V T       ++  +S  VF P P
Sbjct: 139 A----PDLTSATLTTQLEYARKRTGDFG--RWSMLTVQTWPWYSWELLGHLSREVFRPIP 192

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
            V S ++            L          F     +L  +++
Sbjct: 193 AVDSAILRIERRSQAP--DLPGYHAFVDYGFTGLGGSLHATMR 233


>gi|119559|sp|P16898|ERMA_CORDI RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|15778309|gb|AAL07369.1|AF411029_2 ErmX [Propionibacterium acnes]
 gi|40437|emb|CAA35836.1| unnamed protein product [Corynebacterium diphtheriae]
 gi|45564|emb|CAA40590.1| erythromycin methyltransferase [Corynebacterium diphtheriae]
          Length = 253

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 23/236 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +     K         +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMMFDIS 191
           L   + A    P W    LL Q EV  R  A   +       +   W       +   + 
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM----MTAQWSPWFTFHLGSRVP 161

Query: 192 PHVFFPSPKVTSTVIHFIPHLNP-IPCC-LESLKKITQEAFGKRRKTLRQSLKRLG 245
              F P P V   ++      +P IP    ++ + +    F  R + + + L+R G
Sbjct: 162 RSAFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRQG 217


>gi|269839605|ref|YP_003324297.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791335|gb|ACZ43475.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 331

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 106/265 (40%), Gaps = 19/265 (7%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
              +     ++ QNFL    ++  + +SS       V EIG G G +T+ L     R+V+
Sbjct: 39  EQQRSQAHSFLSQNFLRSRQLVDYLLQSSDIGPEDIVYEIGPGRGIITERLARRC-REVV 97

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            IEKD      L+   +  PN L +++ D L+ D  +     S  ++ +N P++I  +++
Sbjct: 98  AIEKDPSLVARLRTELADLPNVL-VLEGDFLEHDLPR-----SRYKVFSNPPFSITAQIV 151

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
                A   P   E   L+ Q+E   R             SVL       ++ +      
Sbjct: 152 QKLTGAPRPP---EDTYLIVQQEAAWRYLGTPRETLS---SVLLKADFVPSITYRFRRED 205

Query: 195 FFPSPKVTSTVIHFIPHL-NPIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGG----EN 248
           F P P V   ++  +    +P+P  +  + +      F   R +L+++L  L      + 
Sbjct: 206 FHPHPGVEVVMLRLLRREADPLPSGMRQVYRDFVTYGFTAWRPSLKETLGPLFARSGVDR 265

Query: 249 LLHQAGIETNLRAENLSIEDFCRIT 273
           L  +  +  +    +L+ E +  + 
Sbjct: 266 LWKRLDLRPDATPTSLAFEQWLGLF 290


>gi|253571409|ref|ZP_04848815.1| rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|251838617|gb|EES66702.1| rRNA methyltransferase [Bacteroides sp. 1_1_6]
          Length = 244

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 102/255 (40%), Gaps = 26/255 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK      F   +P +I  ++PYNI T ++   +   +   
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGSIPYNISTNIIRKIVFESSATI 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +          + E   A+        L++L       +++  I  + F P PKV ST+
Sbjct: 123 SYL---------IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSTL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR---AE 262
           I       P     +  KK   E F    K + +  ++L  +N  ++A      R     
Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKAL--KYARIYDIN 225

Query: 263 NLSIEDFCRITNILT 277
           N+S E F  + N   
Sbjct: 226 NISFEQFVSLFNSYK 240


>gi|307091868|gb|ADN28269.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 123

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/124 (52%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           LDLN   +IA ++G LDG TVIEIG GPG LT+ LLT GARKVI IE+DQ+    L++I+
Sbjct: 1   LDLNFTGRIARAAGPLDGATVIEIGPGPGGLTRALLTEGARKVIAIERDQRAIAALEEIA 60

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             HP RL I+  DAL+ D +     S P+RI+ANLPYNI T L  +W++A+ WPP+++ L
Sbjct: 61  EHHPGRLTIVAGDALEFDPKPLLE-SGPVRIVANLPYNIATALPVSWLTAEPWPPWYDRL 119

Query: 151 TLLF 154
            L+ 
Sbjct: 120 VLML 123


>gi|189466914|ref|ZP_03015699.1| hypothetical protein BACINT_03296 [Bacteroides intestinalis DSM
           17393]
 gi|189435178|gb|EDV04163.1| hypothetical protein BACINT_03296 [Bacteroides intestinalis DSM
           17393]
          Length = 244

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 101/255 (39%), Gaps = 26/255 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     ++KI       +   + EIGAG G+ T  L+      V  IE D +   +
Sbjct: 9   SQNFITSKYHIEKIMNCISLDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEV 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    +PN  +I+ DD LK      F   +P +I  N+PYNI T ++   +   +   
Sbjct: 68  TRNKLLNYPN-YQIVNDDILKFT----FPSHNPYKIFGNIPYNISTNIIRKIVFESSATI 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +          + E   A+        L++L       +++  I  + F P PKV S +
Sbjct: 123 SYL---------IVEYGFAKSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSVL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR---AE 262
           I       P     +  KK   E F    K + +  ++L  +N  ++A      R     
Sbjct: 174 IVL--KRKPAKMAFKERKK--YETFVM--KWVNKEYEKLFTKNQFNKAL--KYARIYDIN 225

Query: 263 NLSIEDFCRITNILT 277
           N+S E F  + N   
Sbjct: 226 NISFEQFVSLFNSYK 240


>gi|305678698|ref|YP_003864117.1| erythromycin ribosome methylase [Enterococcus faecalis]
 gi|304324949|gb|ADM24829.1| erythromycin ribosome methylase [Enterococcus faecalis]
 gi|304324991|gb|ADM24870.1| erythromycin ribosome methylase [Enterococcus faecalis]
 gi|304325033|gb|ADM24911.1| erythromycin ribosome methylase [Enterococcus faecalis]
          Length = 245

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 ALIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|32479370|ref|NP_862223.1| ErmCX [Corynebacterium striatum]
 gi|709806|gb|AAC95475.1| 23S rRNA methyltransferase [Corynebacterium striatum]
 gi|9945783|gb|AAG03357.1| ErmCX [Corynebacterium striatum]
          Length = 253

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 23/236 (9%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +S Y    +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +
Sbjct: 1   MSAYGHG-RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAI 57

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +     K         +E++ DD L      F   ++P  I+ N+P+++ T +
Sbjct: 58  TAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAI 110

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMMFDIS 191
           L   + A    P W    LL Q EV  R  A   +       +   W       +   + 
Sbjct: 111 LRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM----MTAQWSPWFTFHLGSRVP 161

Query: 192 PHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
              F P P V   ++      +P       ++ + +    F  R + + + L+R G
Sbjct: 162 RPAFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRQG 217


>gi|302527546|ref|ZP_07279888.1| dimethyladenosine transferase [Streptomyces sp. AA4]
 gi|302436441|gb|EFL08257.1| dimethyladenosine transferase [Streptomyces sp. AA4]
          Length = 260

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 103/278 (37%), Gaps = 27/278 (9%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             ++T++S      +  +GQNFL D  ++  +  ++    G  ++E+ AG G LT  L  
Sbjct: 2   RGVRTLMSAQSFGGRHELGQNFLADPAVIAAVCTAAARTTG-PLVELAAGDGALTVPLSR 60

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            G R +  +E D +    L   +  H   +++++ D L+           P  ++ NLP+
Sbjct: 61  TG-RPLTAVELDPRRARRLAQRTGGH---VQVVRGDLLRHRLPDV-----PHTVVGNLPF 111

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           ++ T  L          P WE   LL Q EV  R      +     ++       +  + 
Sbjct: 112 HLTTATLRRLFRQ----PHWELAVLLVQWEVARRRAGIGGASQ---MTAAWWPWFEFAVP 164

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR--------KTLRQ 239
             +  H F P P V   ++       P+       ++  +E F  R         +T R 
Sbjct: 165 ARVPAHAFRPRPAVDGGILVISRRPVPLVEDRAEYQEFVREVFTGRGRGLGGILPRTGR- 223

Query: 240 SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
            L        L +  +        L+ E +  +  ++ 
Sbjct: 224 -LSTRAARTWLARQRLSPQALPRELTAEQWASLWELVR 260


>gi|195493555|ref|XP_002094468.1| GE21840 [Drosophila yakuba]
 gi|194180569|gb|EDW94180.1| GE21840 [Drosophila yakuba]
          Length = 207

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 14/184 (7%)

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITA 164
           +   + S  I +I NLP+ I TRLL NW+         +      +TL FQKEV +RI A
Sbjct: 3   QHIPDTSQRIHLIGNLPFAISTRLLINWLEDLSCRRGAFRRIDTCMTLTFQKEVADRICA 62

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLK 223
                   RLSV++   T+  M F I    F P P+V   V+  IP   P        ++
Sbjct: 63  PVGGEQRCRLSVMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFPLVE 122

Query: 224 KITQEAFGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNI 275
           ++ +  F  R+K  R+    L            L  +A ++  LR+  L++E   R+  +
Sbjct: 123 RVVRHIFSMRQKYCRRGFGTLLPPEDREDVTQKLFQRAEVQDTLRSFELTVEQCLRLAEV 182

Query: 276 LTDN 279
            +++
Sbjct: 183 YSEH 186


>gi|45826066|gb|AAS77676.1| ErmB [Shuttle vector pELS100]
 gi|45826074|gb|AAS77683.1| ErmB [Shuttle vector pELS200]
 gi|45826081|gb|AAS77689.1| ErmB [Shuttle vector pLPV111]
 gi|47420452|gb|AAT27432.1| 23S rRNA methylase [Lactobacillus reuteri]
          Length = 245

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PYN+ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYNLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              + ++   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLTVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L K     F    K + +  ++L  +N   QA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKLYKY----FV--SKWVNREYRQLFTKNQFRQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTITYEQVLSIFN 236


>gi|150238|gb|AAA98484.1| erythromycin resistance protein [Plasmid pNG2]
          Length = 284

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 90/226 (39%), Gaps = 18/226 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL +  I+  I +      G  +IEIG G G LT  +  LG R +  +E D +
Sbjct: 8   RHEHGQNFLTNHKIINSIIDLVKQTSG-PIIEIGPGSGALTHPMAHLG-RAITAVEVDAK 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                K         +E++ DD L      F   ++P  I+ N+P+++ T +L   + A 
Sbjct: 66  LAA--KITQETSSAAVEVVHDDFL-----NFRLPATPCVIVGNIPFHLTTAILRKLLHA- 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W    LL Q EV  R  A   +     ++          +   +    F P P V
Sbjct: 118 ---PAWTDAVLLMQWEVARR-RAGVGATTM--MTAQWSPWFTFHLGSRVPRSAFRPQPNV 171

Query: 202 TSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245
              ++      +P       ++ + +    F  R + + + L+R G
Sbjct: 172 DGGILVIRRVGDPKIPIEQRKAFQAMVHTVFTARGRGIGEILRRQG 217


>gi|307091890|gb|ADN28280.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 123

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/124 (46%), Positives = 89/124 (71%), Gaps = 1/124 (0%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           LDLN+  +IA ++G L+G+TV+E+G GPG LT+  L L A +V+ IE+D +    L+ ++
Sbjct: 1   LDLNLTARIARAAGPLEGVTVVEVGPGPGGLTRAPLALSASRVVAIERDPRCVAALQTVA 60

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            ++P RL +I+ DAL++D   +     P RI+ANLPYNI T LL +W++A+ WPP+++SL
Sbjct: 61  ERYPGRLTVIEGDALQIDASAYAQEG-PARIVANLPYNIATALLVSWLTAEPWPPWYDSL 119

Query: 151 TLLF 154
           TLLF
Sbjct: 120 TLLF 123


>gi|63022016|ref|YP_232761.1| N-methyltransferase [Streptococcus pyogenes]
 gi|496516|emb|CAA47093.1| erm2 [Streptococcus pyogenes]
 gi|3127117|gb|AAC16049.1| erythromycin resistance determinant [Tn917 delivery vector pAJ005]
 gi|13549399|gb|AAK27828.1| rRNA methylase [TnphoZ mutagenesis vector pMHL120]
 gi|38707215|gb|AAR27225.1| N-methyltransferase [Streptococcus pyogenes]
          Length = 253

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL +  +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 14  KYSQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 72

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 73  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 127

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 128 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 178

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 179 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 230

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 231 LSTVTYEQVLSIFN 244


>gi|186909909|gb|ACC94310.1| ErmB [uncultured Enterococcus sp.]
          Length = 248

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 8   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 66

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 67  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 121

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 122 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 172

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 173 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 224

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 225 LSTITYEQVLSIFN 238


>gi|190410490|ref|YP_001965493.1| putative erythromycin methylase B protein [Pediococcus
           acidilactici]
 gi|81176611|gb|ABB59539.1| putative erythromycin methylase B protein [Pediococcus
           acidilactici]
          Length = 245

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA      +  +
Sbjct: 171 ALIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAM--KYAKVND 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|182684293|ref|YP_001836040.1| erythromycin ribosome methylase [Streptococcus pneumoniae CGSP14]
 gi|182629627|gb|ACB90575.1| erythromycin ribosome methylase [Streptococcus pneumoniae CGSP14]
          Length = 261

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|59938866|gb|AAX12192.1| erythromycin ribosome methylase [Enterococcus faecium]
          Length = 243

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 4   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 62

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 63  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 117

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 118 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNS 168

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA      +  +
Sbjct: 169 ALIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAM--KYAKVND 220

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 221 LSTVTYEQVLSIFN 234


>gi|33243437|gb|AAQ01499.1| erythromycin resistance protein [Lactobacillus crispatus]
 gi|329666418|gb|AEB92366.1| N-methyltransferase [Lactobacillus johnsonii DPC 6026]
          Length = 245

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PYN+ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYNLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTITYEQVLSIFN 236


>gi|1185588|gb|AAB40318.1| erythromycin resistance; erythromycin resistance determinant
           [Cloning vector pDG1663]
 gi|1185596|gb|AAB40325.1| erythromycin resistance; erythromycin resistance determinant
           [Cloning vector pDG1664]
 gi|1277133|gb|AAC53690.1| erythromycin-resistance protein [Cloning vector pFW15]
 gi|23986284|gb|AAN05740.1| rRNA methylase [Expression vector pLIV1]
          Length = 245

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL +  +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|284518868|gb|ADB92556.1| Ccr1 [Streptomyces caelestis]
          Length = 341

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 106/259 (40%), Gaps = 23/259 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNF      +++     G+++G+  +EIG G G +T+ L   G   + V+E D Q
Sbjct: 58  RRVWGQNFFKSKAAVRRFTAQIGAVEGLPTVEIGPGSGMITKELAKSG-EPLTVVEIDDQ 116

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +  +L +   + P+ + ++ +D L    E     +   R++ NLP+   T +L   +   
Sbjct: 117 WARLLAE---ELPSHVTMVNEDFLSWGPE-----TECFRMVGNLPFGASTEILRTCLGYG 168

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMMFDISPHVFFPSP 199
             P  +     L Q E   +         +        W       M  +   H F P P
Sbjct: 169 --PDRFLEGVFLVQLEFARKRAGAWGGNLFNA-----QWSPWFTFHMGHEFPRHCFRPVP 221

Query: 200 KVTSTVIHFIPHLNPIPCCLE--SLKKITQEAFGKRRKTLRQSLKRLG---GENLLHQAG 254
           K  +  +   P  +P+    E  + +++    F   + T+ ++ +R+      + L +A 
Sbjct: 222 KTDTATLFVDPRRDPLLPWRERVAYQELVSAVFNTGQLTVGEAAQRVNVRKPADWLRRAE 281

Query: 255 IETNLRAENLSIEDFCRIT 273
           +    R ++L  ED+  + 
Sbjct: 282 VFPETRVKDLDAEDWSALF 300


>gi|15127842|gb|AAK84314.1|AF368302_1 ErmB [Enterococcus faecium]
          Length = 237

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTITYEQVLSIFN 236


>gi|330719898|gb|EGG98373.1| Dimethyladenosine transferase [gamma proteobacterium IMCC2047]
          Length = 155

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 5/123 (4%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               +K  GQNFL D NI++ I  S        + EIG G G +T+ LL      + V+E
Sbjct: 6   GHQARKRFGQNFLQDQNIIRNILLSINPKADDNIAEIGPGLGAITEHLLKATNGHLNVVE 65

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSPIRIIANLPYNIGTRL 133
            D+    +LK     +P  L I Q DALK DF +      + +  +RI+ NLPYNI T L
Sbjct: 66  IDRDLVQVLKTQFFNYPE-LNIHQGDALKFDFSQLVASDQSDTQKLRIVGNLPYNISTPL 124

Query: 134 LFN 136
           +F 
Sbjct: 125 IFQ 127


>gi|20069865|ref|NP_613080.1| rRNA methylase [Lactobacillus reuteri]
 gi|27753648|ref|NP_776205.1| erm44 [Lactobacillus reuteri]
 gi|27656765|gb|AAO20906.1|AF205068_1 erm44 [Lactobacillus reuteri]
 gi|1230606|gb|AAC45607.1| rRNA methylase [Lactobacillus fermentum]
 gi|19918894|gb|AAL99232.1| rRNA methylase [Lactobacillus reuteri]
          Length = 250

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L K     F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKLYKY----FV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTITYEQVLSIFN 236


>gi|127203|sp|P06573|ERM_STRSA RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|150491|gb|AAA25527.1| adenine methylase [Plasmid pAM77]
          Length = 245

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL +  +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRSLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|223932186|ref|ZP_03624190.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus suis 89/1591]
 gi|294623170|ref|ZP_06702052.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium U0317]
 gi|59938860|gb|AAX12189.1| erythromycin ribosome methylase [Enterococcus faecium]
 gi|223899167|gb|EEF65524.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus suis 89/1591]
 gi|291597422|gb|EFF28591.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium U0317]
 gi|295980968|emb|CBJ57216.1| erythromycin ribosome methylase [Streptococcus pneumoniae]
          Length = 245

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|10956213|ref|NP_053005.1| MSL methylase [Streptococcus agalactiae]
 gi|115534816|ref|YP_783898.1| MLS methylase [Enterococcus faecalis]
 gi|169833871|ref|YP_001694729.1| rRNA adenine N-6-methyltransferase
           (macrolide-lincosamide-streptogramin B resistance
           protein) [Streptococcus pneumoniae Hungary19A-6]
 gi|194398695|ref|YP_002037949.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae
           G54]
 gi|293569556|ref|ZP_06680835.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1071]
 gi|298229341|ref|ZP_06963022.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255910|ref|ZP_06979496.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503699|ref|YP_003725639.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|307127298|ref|YP_003879329.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|312904689|ref|ZP_07763842.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0635]
 gi|313247840|ref|YP_004033002.1| erythromycin resistance protein [Enterococcus faecalis]
 gi|322388219|ref|ZP_08061823.1| rRNA adenine N-6-methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|157834333|pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
           That Confers Macrolide-Lincosamide-Streptogramin
           Antibiotic Resistance, Nmr, Minimized Average Structure
 gi|511078|emb|CAA50902.1| MSL methylase [Streptococcus agalactiae]
 gi|886483|emb|CAA58028.1| adenine methylase [Enterococcus sp.]
 gi|12956999|emb|CAC29169.1| MLS methylase [Enterococcus faecalis]
 gi|33357431|gb|AAQ16568.1| macrolide resistance determining protein [Streptococcus
           hyointestinalis]
 gi|67043689|gb|AAY63932.1| MLS methylase [Streptococcus cristatus]
 gi|84616745|emb|CAJ53870.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae]
 gi|102231548|gb|ABF70488.1| erythromycin and macrolide resistance protein [Lactobacillus
           johnsonii]
 gi|156788912|gb|ABU96031.1| Erm(B) methylase [Streptococcus pneumoniae]
 gi|168996373|gb|ACA36985.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) [Streptococcus pneumoniae Hungary19A-6]
 gi|169636215|dbj|BAG12485.1| MLS methylase [Streptococcus pneumoniae]
 gi|169636245|dbj|BAG12514.1| MLS methylase [Streptococcus pneumoniae]
 gi|169636260|dbj|BAG12527.1| MLS methylase [Streptococcus pneumoniae]
 gi|194358362|gb|ACF56810.1| rRNA adenine N-6-methyltransferase ErmB [Streptococcus pneumoniae
           G54]
 gi|291587734|gb|EFF19603.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1071]
 gi|298239294|gb|ADI70425.1| rRNA (adenine-N(6)-)-methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|306484360|gb|ADM91229.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|310631974|gb|EFQ15257.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0635]
 gi|312837007|dbj|BAJ34893.1| erythromycin resistance protein [Enterococcus faecalis]
 gi|321140891|gb|EFX36392.1| rRNA adenine N-6-methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321156829|emb|CBW38816.1| erm(b) methylase; subname: full=mls methylase; subname: full=rrna
           adenine n-6-methyltransferase; ec=2.1.1.48; subname:
           full=erm(b) methylase; subname: full=mls methylase;
           subname: full=rRNA adenine N-6-methyltransferase;
           ec=2.1.1.48 [Streptococcus pneumoniae]
 gi|321156886|emb|CBW38874.1| rRNA methylase [Streptococcus pneumoniae]
 gi|321157364|emb|CBW39344.1| rRNA methylase [Streptococcus pneumoniae]
 gi|321157384|emb|CBW39363.1| rRNA methylase [Streptococcus pneumoniae]
 gi|321157409|emb|CBW39387.1| rRNA methylase [Streptococcus pneumoniae]
 gi|321157455|emb|CBW39433.1| rRNA methylase [Streptococcus pneumoniae]
          Length = 245

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTITYEQVLSIFN 236


>gi|228860921|ref|YP_002842047.1| ErmB [Lactobacillus plantarum]
 gi|253755557|ref|YP_003028697.1| rRNA adenine N-6-methyltransferase [Streptococcus suis BM407]
 gi|314943583|ref|ZP_07850342.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133C]
 gi|59938856|gb|AAX12187.1| erythromycin ribosome methylase [Enterococcus faecium]
 gi|219523816|gb|ACL14885.1| ErmB [Lactobacillus plantarum]
 gi|251818021|emb|CAZ55805.1| rRNA adenine N-6-methyltransferase [Streptococcus suis BM407]
 gi|290770977|emb|CBK33767.1| MLS methylase [Streptococcus suis]
 gi|290770984|emb|CBK33773.1| MLS methylase [Streptococcus pyogenes]
 gi|309385833|gb|ADO66761.1| ErmB [Enterococcus faecium]
 gi|313575405|emb|CBR26934.1| MLS methylase [Streptococcus phage phi-SsUD.1]
 gi|313597730|gb|EFR76575.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133C]
 gi|319757842|gb|ADV69784.1| ErmB [Streptococcus suis JS14]
 gi|321156819|emb|CBW38806.1| ermB [Streptococcus pneumoniae]
 gi|321157419|emb|CBW39398.1| rRNA methylase [Streptococcus pneumoniae]
          Length = 245

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|28210013|ref|NP_780957.1| dimethyladenosine transferase [Clostridium tetani E88]
 gi|28202448|gb|AAO34894.1| dimethyladenosine transferase [Clostridium tetani E88]
          Length = 136

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 8/134 (5%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + QKEVGER++A+  +  YG LS+L  +     ++  +SP  F P PKV S +I      
Sbjct: 1   MIQKEVGERMSAKPKAKEYGSLSLLVQYYCDINIIRRVSPSSFIPRPKVDSVIIKLDKLQ 60

Query: 213 NPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLG------GENLLHQAGIETNLRAENL 264
            P       E   KI + AF  RRKT+   +K L        E     + I+   R E L
Sbjct: 61  KPRVSVKDEELFFKIIRSAFNMRRKTMWNVIKSLSNLDKEIIEKAFRVSNIDPKRRGETL 120

Query: 265 SIEDFCRITNILTD 278
           S+E+F  +++ L +
Sbjct: 121 SVEEFAILSDSLHE 134


>gi|59938858|gb|AAX12188.1| erythromycin ribosome methylase [Enterococcus faecium]
          Length = 243

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 4   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 62

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 63  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 117

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 118 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 168

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 169 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 220

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 221 LSTVTYEQVLSIFN 234


>gi|314993276|ref|ZP_07858648.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133B]
 gi|313592239|gb|EFR71084.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133B]
          Length = 249

 Score =  134 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 10  KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 68

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 69  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 123

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 124 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 174

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 175 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 226

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 227 LSTVTYEQVLSIFN 240


>gi|138752661|emb|CAM32752.1| MLS methylase [Streptococcus pneumoniae]
          Length = 245

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|2924303|emb|CAA57314.1| adenine methylase [Enterococcus hirae]
          Length = 245

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL +  +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTNEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|29377810|ref|NP_816938.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis V583]
 gi|187729653|ref|YP_001798654.1| rRNA adenine N-6-methyltransferase [Lactococcus garvieae]
 gi|227518295|ref|ZP_03948344.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecalis
           TX0104]
 gi|228477694|ref|ZP_04062323.1| rRNA adenine N-6-methyltransferase [Streptococcus salivarius SK126]
 gi|255976304|ref|ZP_05426890.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis T2]
 gi|256852580|ref|ZP_05557955.1| rRNA methylase [Enterococcus faecalis T8]
 gi|256959519|ref|ZP_05563690.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|257080187|ref|ZP_05574548.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|292493937|ref|YP_003533080.1| rRNA methyltransferase [Bacillus sp. BS-01]
 gi|293384636|ref|ZP_06630499.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis R712]
 gi|293389670|ref|ZP_06634121.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis S613]
 gi|307273762|ref|ZP_07554987.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0855]
 gi|307283567|ref|ZP_07563750.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0860]
 gi|307288935|ref|ZP_07568906.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0109]
 gi|309803307|ref|ZP_07697404.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV
           11V1-d]
 gi|309808536|ref|ZP_07702434.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV
           01V1-a]
 gi|312907858|ref|ZP_07766843.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis DAPTO 512]
 gi|312978967|ref|ZP_07790690.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis DAPTO 516]
 gi|317495460|ref|ZP_07953828.1| ribosomal RNA adenine dimethylase [Gemella moribillum M424]
 gi|322392769|ref|ZP_08066227.1| rRNA adenine N-6-methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|331267237|ref|YP_004326867.1| erythromycin resistance protein; ribosomal RNA adenine
           N-6-methyltransferaseadenine dimethylase family protein
           [Streptococcus oralis Uo5]
 gi|30179806|sp|P20173|ERMB_ENTFA RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|19568826|gb|AAL91926.1|AF480455_1 ErmB [Bacillus cereus]
 gi|19568828|gb|AAL91927.1|AF480456_1 ErmB [Bacillus cereus]
 gi|19568830|gb|AAL91928.1|AF480457_1 ErmB [Bacillus cereus]
 gi|19568832|gb|AAL91929.1|AF480458_1 ErmB [Bacillus cereus]
 gi|19568836|gb|AAL91931.1|AF480460_1 ErmB [Bacillus cereus]
 gi|456370|emb|CAA45935.1| erm2 [Streptococcus pyogenes]
 gi|1532095|gb|AAC44378.1| adenine methylase [Staphylococcus lentus]
 gi|1835782|gb|AAC71783.1| adenine methylase [Enterococcus faecalis]
 gi|6273679|emb|CAA73921.1| rRNA methylase [Staphylococcus aureus]
 gi|21492653|gb|AAA27452.2| Erm(B) [Enterococcus faecalis]
 gi|29345262|gb|AAO83009.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis V583]
 gi|31442295|dbj|BAC77345.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|51493758|gb|AAU04869.1| rRNA methylase [Bursa aurealis delivery vector pBursa]
 gi|67511466|emb|CAI99370.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae]
 gi|67511470|emb|CAI99372.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae]
 gi|67511474|emb|CAI99374.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes]
 gi|87042724|gb|ABD16369.1| rRNA methylase [Streptococcus agalactiae]
 gi|110556100|dbj|BAE98119.1| rRNA methylase [Enterococcus faecalis]
 gi|134269486|emb|CAL69907.1| rRNA methylase [Streptococcus pyogenes]
 gi|145974706|gb|ABQ00061.1| ErmB [Staphylococcus aureus]
 gi|158148992|dbj|BAF82031.1| rRNA methylase [Staphylococcus aureus]
 gi|171854437|dbj|BAG16444.1| putative rRNA adenine N-6-methyltransferase [Lactococcus garvieae]
 gi|227074249|gb|EEI12212.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecalis
           TX0104]
 gi|228250583|gb|EEK09794.1| rRNA adenine N-6-methyltransferase [Streptococcus salivarius SK126]
 gi|255969176|gb|EET99798.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis T2]
 gi|256712127|gb|EEU27160.1| rRNA methylase [Enterococcus faecalis T8]
 gi|256950015|gb|EEU66647.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|256988217|gb|EEU75519.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|281334214|gb|ADA61298.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) [Staphylococcus aureus]
 gi|291078052|gb|EFE15416.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis R712]
 gi|291081011|gb|EFE17974.1| rRNA adenine N-6-methyltransferase [Enterococcus faecalis S613]
 gi|291276226|gb|ADD91314.1| rRNA methyltransferase [Bacillus sp. BS-01]
 gi|306500112|gb|EFM69458.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0109]
 gi|306503591|gb|EFM72832.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0860]
 gi|306509563|gb|EFM78608.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0855]
 gi|308164815|gb|EFO67065.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV
           11V1-d]
 gi|308168213|gb|EFO70333.1| rRNA adenine N-6-methyltransferase [Lactobacillus iners LactinV
           01V1-a]
 gi|310626139|gb|EFQ09422.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis DAPTO 512]
 gi|311288232|gb|EFQ66788.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis DAPTO 516]
 gi|315154402|gb|EFT98418.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0031]
 gi|315160679|gb|EFU04696.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX0645]
 gi|315163599|gb|EFU07616.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX1302]
 gi|316914274|gb|EFV35752.1| ribosomal RNA adenine dimethylase [Gemella moribillum M424]
 gi|316980281|emb|CBL58180.1| rRNA methylase [Staphylococcus aureus]
 gi|321144347|gb|EFX39750.1| rRNA adenine N-6-methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321157439|emb|CBW39418.1| rRNA methylase [Streptococcus pneumoniae]
 gi|326683909|emb|CBZ01527.1| erythromycin resistance protein; ribosomal RNA adenine
           N-6-methyltransferaseadenine dimethylase family protein
           [Streptococcus oralis Uo5]
 gi|739954|prf||2004266G erm2 protein
          Length = 245

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|156633671|gb|ABU90832.1| rRNA adenine N-6-methyltransferase [Shuttle vector pMTL007]
          Length = 257

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 18  KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 76

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 77  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 131

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 132 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 182

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 183 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 234

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 235 LSTVTYEQVLSIFN 248


>gi|182684297|ref|YP_001836044.1| rRNA methylase [Streptococcus pneumoniae CGSP14]
 gi|182629631|gb|ACB90579.1| rRNA methylase [Streptococcus pneumoniae CGSP14]
          Length = 245

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTITYEQVLSIFN 236


>gi|3411260|gb|AAC31204.1| rRNA methylase [Lactobacillus reuteri]
          Length = 250

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTITYEQVLSIFN 236


>gi|182683142|ref|YP_001834889.1| rRNA methylase [Streptococcus pneumoniae CGSP14]
 gi|182628476|gb|ACB89424.1| rRNA methylase [Streptococcus pneumoniae CGSP14]
          Length = 245

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTITYEQVLSIFN 236


>gi|126699621|ref|YP_001088518.1| rRNA adenine N-6-methyltransferase [Clostridium difficile 630]
 gi|126699626|ref|YP_001088523.1| rRNA adenine N-6-methyltransferase [Clostridium difficile 630]
 gi|5019745|gb|AAD37840.1|AF109075_2 rRNA methyltransferase Erm1B [Clostridium difficile]
 gi|5019748|gb|AAD37843.1|AF109075_5 rRNA methyltransferase Erm2B [Clostridium difficile]
 gi|15986374|emb|CAC82337.1| erythromycin methylase [Clostridium difficile]
 gi|115251058|emb|CAJ68889.1| ribosomal RNA adenine N-6-methyltransferase [Clostridium difficile]
 gi|115251063|emb|CAJ68894.1| ribosomal RNA adenine N-6-methyltransferase [Clostridium difficile]
          Length = 245

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA      +  +
Sbjct: 171 ALIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAM--KYAKVND 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|153824301|ref|ZP_01976968.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) [Vibrio cholerae B33]
 gi|126518177|gb|EAZ75402.1| dimethyladenosine transferase
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) [Vibrio cholerae B33]
          Length = 108

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIPC-CLESLKKITQEAFGKRRKT 236
            +  K   + ++ P  F P PKV S V+  +P+ + P P   LE L ++ +E F +RRKT
Sbjct: 1   QYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKT 60

Query: 237 LRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           +R   K L     L   GI   +R ENL++  F  + N L
Sbjct: 61  VRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWL 100


>gi|237725694|ref|ZP_04556175.1| erythromycin resistance determinant [Bacteroides sp. D4]
 gi|298385271|ref|ZP_06994830.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 1_1_14]
 gi|229435502|gb|EEO45579.1| erythromycin resistance determinant [Bacteroides dorei 5_1_36/D4]
 gi|298262415|gb|EFI05280.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 1_1_14]
          Length = 253

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 14  KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 72

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 73  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 127

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 128 SDIYLIVEEGFYKGTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 178

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 179 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 230

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 231 LSTVTYEQVLSIFN 244


>gi|325955700|ref|YP_004286328.1| erythromycin resistance protein [Lactobacillus acidophilus 30SC]
 gi|325334486|gb|ADZ08234.1| erythromycin resistance protein [Lactobacillus acidophilus 30SC]
          Length = 245

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PYN+ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|37962668|gb|AAR05653.1| ErmB [Bacteroides uniformis]
          Length = 245

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKGTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|67511468|emb|CAI99371.1| rRNA adenine N-6-methyltransferase [Streptococcus pneumoniae]
          Length = 245

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|59938864|gb|AAX12191.1| erythromycin ribosome methylase [Enterococcus faecium]
          Length = 243

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 4   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 62

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 63  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 117

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 118 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 168

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 169 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 220

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 221 LSTVTYEQVLSIFN 234


>gi|7595746|gb|AAF64431.1|AF229200_4 erythromycin resistance methylase [Enterococcus faecium]
 gi|9246953|gb|AAF86219.1|AF242872_2 ErmB [Enterococcus faecium]
          Length = 248

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PYN+ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTITYEQVLSIFN 236


>gi|314953278|ref|ZP_07856210.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133A]
 gi|313594677|gb|EFR73522.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133A]
          Length = 249

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 10  KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 68

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 69  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 123

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 124 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 174

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 175 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 226

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 227 LSTVTYEQVLSIFN 240


>gi|237710832|ref|ZP_04541313.1| rRNA methylase [Bacteroides sp. 9_1_42FAA]
 gi|317474076|ref|ZP_07933354.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA]
 gi|229455554|gb|EEO61275.1| rRNA methylase [Bacteroides sp. 9_1_42FAA]
 gi|316909759|gb|EFV31435.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 245

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVAEGFYKGTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|31321898|gb|AAK68630.1| erythromycin resistance protein [synthetic construct]
          Length = 251

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|187729640|ref|YP_001798641.1| rRNA adenine N-6-methyltransferase [Lactococcus garvieae]
 gi|222142618|ref|YP_002559373.1| rRNA adenine N-6-methyltransferase [Macrococcus caseolyticus
           JCSC5402]
 gi|256959343|ref|ZP_05563514.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis DS5]
 gi|257086939|ref|ZP_05581300.1| rRNA methylase [Enterococcus faecalis D6]
 gi|261209325|ref|ZP_05923706.1| rRNA methylase [Enterococcus faecium TC 6]
 gi|269124242|ref|YP_003305352.1| AM7 [Enterococcus faecalis]
 gi|289567334|ref|ZP_06447709.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium D344SRF]
 gi|296450891|ref|ZP_06892640.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296878629|ref|ZP_06902634.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile
           NAP07]
 gi|307268297|ref|ZP_07549679.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX4248]
 gi|313247831|ref|YP_004032993.1| erythromycin resistance protein [Enterococcus faecalis]
 gi|61223741|sp|P0A4D5|ERM1_ENTFA RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|61223742|sp|P0A4D6|ERM1_CLOPE RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|14211231|gb|AAK57385.1|AF372620_1 ribosomal RNA methylase [glnQ allelic exchange vector pAG101]
 gi|15384305|gb|AAK96238.1|AF406971_3 erythromycin resistance methylase [Enterococcus hirae]
 gi|19568834|gb|AAL91930.1|AF480459_1 ErmB [Bacillus cereus]
 gi|20522042|gb|AAM26278.1|AF435436_1 Erm(B) [Cloning vector pAM434]
 gi|22595310|gb|AAN02496.1|AF405696_4 erythromycin resistance protein [Reporter vector pALH109]
 gi|22595315|gb|AAN02500.1|AF405697_4 erythromycin resistance protein [Reporter vector pALH122]
 gi|22595320|gb|AAN02504.1|AF405698_4 erythromycin resistance protein [Reporter vector pVA838]
 gi|40558|emb|CAA41221.1| ribosomal RNA methylase [Clostridium perfringens]
 gi|47020|emb|CAA68299.1| unnamed protein product [Enterococcus faecalis]
 gi|144783|gb|AAC36955.1| RNA methylase [Shuttle vector pJIR751]
 gi|208134|gb|AAA73116.1| RNA methylase [unidentified cloning vector]
 gi|220962|dbj|BAA14385.1| MLS resistance protein [synthetic construct]
 gi|841202|gb|AAC43480.1| ErmBP [Clostridium perfringens]
 gi|2745828|gb|AAB94755.1| adenine methylase [Cloning vector pIL252]
 gi|2773394|gb|AAB96789.1| adenine methylase [Cloning vector pIL253]
 gi|3132863|gb|AAC16408.1| erythromycin resistance gene [Shuttle vector pJIR1457]
 gi|3138989|gb|AAD11463.1| rRNA adenine N-6-methyltransferase [synthetic construct]
 gi|3320598|gb|AAC83650.1| adenine methylase [Integrational vector pMUTIN2]
 gi|5459333|emb|CAB50726.1| adenin-N6-methylase [Expression vector pERM-ex1]
 gi|5459338|emb|CAB50711.1| adenin-N6-methylase [Cloning vector pAMY-em1]
 gi|6979875|gb|AAF34637.1| ErmAM [Shuttle vector pHS17]
 gi|9963916|gb|AAG09762.1| erythromycin resistance methylase [Staphylococcus intermedius]
 gi|13442778|dbj|BAB39762.1| Erm [Shuttle vector pVA838]
 gi|15986369|emb|CAC82333.1| erythromycin methylase [Clostridium difficile]
 gi|25900787|emb|CAD57776.1| erythromycin resistance protein [Thermosensitive cloning vector
           pTN1]
 gi|31322220|gb|AAN87035.1| erythromycin-resistant methylase [Streptococcus gallolyticus]
 gi|31873066|gb|AAP60029.1| Erm [Cloning vector pMSP3535]
 gi|34558744|gb|AAQ75101.1| Erm [Shuttle vector pMSP3535-FT]
 gi|34558751|gb|AAQ75107.1| Erm [Shuttle vector pMSP3535-RT]
 gi|37595571|gb|AAQ94627.1| 23S rRNA methylase [Arcanobacterium pyogenes]
 gi|50593498|gb|AAT79488.1| ErmAM [Mutagenesis vector pCAM45]
 gi|51890404|dbj|BAD42832.1| erythromycin resistance gene [Shuttle vector pUCYIT356N]
 gi|57547343|gb|AAW52436.1| adenine methylase [plasmid vector pKS1]
 gi|67511472|emb|CAI99373.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes]
 gi|73665560|gb|AAZ79487.1| erythromycin resistance protein [Mutagenesis vector pNZ5319]
 gi|78482803|emb|CAI91552.1| rRNA methyltransferase [Clostridium difficile]
 gi|93007463|gb|ABE97201.1| ribosomal RNA adenine N-6-methyltransferase [Streptococcus
           thermophilus]
 gi|134269470|emb|CAL69877.1| Erm(B) [Streptococcus pyogenes]
 gi|146188922|emb|CAJ21502.1| ErmB protein [Clostridium difficile]
 gi|158421230|gb|ABW37926.1| Erm [Cloning vector pAMS749-12]
 gi|159023682|gb|ABW87265.1| ribosomal RNA adenine dimethylase [Insertion vector pGh9:ISS1]
 gi|171854424|dbj|BAG16431.1| putative rRNA adenine N-6-methyltransferase [Lactococcus garvieae]
 gi|222121387|dbj|BAH18720.1| rRNA adenine N-6-methyltransferase [Macrococcus caseolyticus
           JCSC5402]
 gi|222478234|gb|ACM62691.1| ErmC [Shuttle vector pMSP3535H3]
 gi|225631881|emb|CAR79030.1| adenine methylase [Cloning shuttle vector pA13]
 gi|226442583|dbj|BAH56452.1| MLS resistance protein [Shuttle vector pLES003]
 gi|237857402|gb|ACR23640.1| rRNA methylase [synthetic construct]
 gi|238481675|gb|ACR43891.1| MLS resistance protein [Shuttle vector pMTL82254]
 gi|256949839|gb|EEU66471.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis DS5]
 gi|256994969|gb|EEU82271.1| rRNA methylase [Enterococcus faecalis D6]
 gi|260076697|gb|EEW64443.1| rRNA methylase [Enterococcus faecium TC 6]
 gi|260161316|emb|CAZ39284.1| MLS methylase [Streptococcus suis]
 gi|267822506|gb|ACY79534.1| AM7 [Enterococcus faecalis]
 gi|289160874|gb|EFD08799.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium D344SRF]
 gi|290791122|gb|ADD63342.1| rRNA adenine N-6-methyltransferase [Cloning vector pAE1]
 gi|296260263|gb|EFH07109.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296430436|gb|EFH16278.1| rRNA (adenine-N(6)-)-methyltransferase [Clostridium difficile
           NAP07]
 gi|299892748|gb|ADJ57693.1| ErmAM [Expression vector pT1NX]
 gi|306515387|gb|EFM83920.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX4248]
 gi|312836998|dbj|BAJ34884.1| erythromycin resistance protein [Enterococcus faecalis]
 gi|314912611|gb|ADT64003.1| erythromycin resistance protein [Group II intron-based directed
           mutagenesis plasmid pMTL007C-E2]
 gi|315026359|gb|EFT38291.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecalis TX2137]
 gi|323650671|gb|ADX97419.1| Erm resistance protein [Clostridium acetobutylicum]
 gi|324029109|gb|ADY16710.1| erythromycin resistance protein [Clostridium acetobutylicum]
          Length = 245

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|127199|sp|P10738|ERMB_ECOLX RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|150715|gb|AAA25634.1| 23S rRNA methylase [Plasmid pIP1527]
          Length = 245

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
            +  +    +  R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  NLSSEKLKSN-TRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P P+V S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPRVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|2623780|gb|AAB86539.1| erythromycin resistance determinant [Lactobacillus reuteri]
          Length = 248

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTKIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L K     F    K + +  ++L  +N  +QA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKLYKY----FV--SKWVNREYRQLFTKNQFYQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTITYEQVLSIFN 236


>gi|79946|pir||A27507 DNA adenine methylase (EC 2.1.1.-), ORF2 and ORF3 - Enterococcus
           faecalis plasmid pAMbeta1 (fragments)
          Length = 286

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|323142569|ref|ZP_08077385.1| rRNA adenine N-6-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322413002|gb|EFY03905.1| rRNA adenine N-6-methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 262

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 23  KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 81

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 82  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 136

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 137 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 187

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 188 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 239

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 240 LSTVTYEQVLSIFN 253


>gi|314997282|ref|ZP_07862255.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133a01]
 gi|313588632|gb|EFR67477.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133a01]
          Length = 249

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 10  KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 68

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 69  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 123

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 124 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 174

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 175 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 226

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 227 LSTVTYEQVLSIFN 240


>gi|32470479|ref|NP_863164.1| erythromycin resistance transferase [Enterococcus faecium]
 gi|69244936|ref|ZP_00603126.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecium DO]
 gi|257880618|ref|ZP_05660271.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,230,933]
 gi|257883423|ref|ZP_05663076.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,502]
 gi|257892145|ref|ZP_05671798.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,410]
 gi|257895032|ref|ZP_05674685.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,408]
 gi|258615894|ref|ZP_05713664.1| erythromycin resistance transferase [Enterococcus faecium DO]
 gi|260558614|ref|ZP_05830804.1| rRNA methylase [Enterococcus faecium C68]
 gi|309775385|ref|ZP_07670389.1| rRNA adenine N-6-methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|314940046|ref|ZP_07847232.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133a04]
 gi|314948330|ref|ZP_07851721.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0082]
 gi|319935238|ref|ZP_08009677.1| rRNA adenine N-6-methyltransferase [Coprobacillus sp. 29_1]
 gi|320152807|ref|YP_004172630.1| ErmB [Enterococcus faecium]
 gi|11991160|gb|AAG42227.1|AF299292_1 erythromycin resistance methylase [Staphylococcus intermedius]
 gi|21886748|gb|AAM77891.1|AF516335_11 ermB methylase [Enterococcus faecium]
 gi|9963914|gb|AAG09761.1| erythromycin resistance methylase [Staphylococcus intermedius]
 gi|28849340|gb|AAO52847.1| erythromycin resistance transferase [Enterococcus faecium]
 gi|68196102|gb|EAN10533.1| rRNA (adenine-N(6)-)-methyltransferase [Enterococcus faecium DO]
 gi|257814846|gb|EEV43604.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,230,933]
 gi|257819081|gb|EEV46409.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,502]
 gi|257828505|gb|EEV55131.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,410]
 gi|257831411|gb|EEV58018.1| ribosomal RNA adenine dimethylase [Enterococcus faecium 1,231,408]
 gi|260075352|gb|EEW63664.1| rRNA methylase [Enterococcus faecium C68]
 gi|281336200|gb|ADA62749.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) [Enterococcus faecium]
 gi|308916861|gb|EFP62597.1| rRNA adenine N-6-methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|313640723|gb|EFS05303.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0133a04]
 gi|313645247|gb|EFS09827.1| ribosomal RNA adenine dimethylase family protein [Enterococcus
           faecium TX0082]
 gi|319739759|gb|ADV60077.1| ErmB [Enterococcus faecium]
 gi|319809888|gb|EFW06276.1| rRNA adenine N-6-methyltransferase [Coprobacillus sp. 29_1]
 gi|323464898|gb|ADX77051.1| rRNA adenine N-6-methyltransferase [Staphylococcus pseudintermedius
           ED99]
          Length = 245

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|127202|sp|P21236|ERM_STRPN RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=ErmAM; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|133919252|emb|CAL92507.1| MLS methylase [Streptococcus pneumoniae]
 gi|162286810|emb|CAP17168.1| erythromycin ribosome methylase [Streptococcus pneumoniae]
          Length = 245

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTITYEQVLSIFN 236


>gi|310286444|ref|YP_003937705.1| rRNA adenine N-6-methyltransferase [Escherichia coli]
 gi|308826773|emb|CBX36034.1| rRNA adenine N-6-methyltransferase [Escherichia coli]
          Length = 245

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P P+V S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPRVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|87159879|ref|YP_492693.1| rRNA adenine N-6-methyltransferase
           (macrolide-lincosamide-streptogramin B resistance
           protein) [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87125853|gb|ABD22972.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
          Length = 244

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 103/256 (40%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ + E  +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYEFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|73487011|gb|AAZ76625.1| Erm(39)ne [Mycobacterium neworleansense]
          Length = 246

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 92/242 (38%), Gaps = 21/242 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNF  D  ++  I +      G  +IEIGAG G LT  L  L  R +  IE D++    
Sbjct: 12  GQNFXRDRRVVADIVKIVARTTG-PIIEIGAGDGALTLPLQRLD-RPLTAIEIDRRRAGR 69

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   +S      E++  D L+          +P  ++ NLP+++ T +L   +      P
Sbjct: 70  LAARTSA-----EVVGTDFLRYRLP-----PTPHVVVGNLPFHLTTAILRRLL----HGP 115

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            W    LL Q EV  R  A   +     ++       +  ++  +    F P P V + +
Sbjct: 116 GWTDAVLLMQWEVARRRAAVGGATM---MTAQWWPWFEFNLVRKVPADAFRPRPGVDAGL 172

Query: 206 IHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           +       P+         + +  E F  R   +   L+       L   GI  +    +
Sbjct: 173 LTIARRDEPLVARADRRRYQSLAHEMFTGRGHGIAXILRHHVDRRWLLANGIHPSALPRD 232

Query: 264 LS 265
           L+
Sbjct: 233 LT 234


>gi|294617740|ref|ZP_06697358.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679]
 gi|291595986|gb|EFF27261.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679]
          Length = 245

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA      +  +
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAM--KYAKVND 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|316973725|gb|EFV57284.1| putative C2 domain protein [Trichinella spiralis]
          Length = 1392

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 23/215 (10%)

Query: 89   ISSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRIIANLPYNIGTRLLFNWIS 139
            I+      ++I   D +K + E  F             P+ +I NLP+N+ T L+  W+ 
Sbjct: 1133 IAESSGGIMDIRIGDVMKYEIETEFPADVKREWSEEPPPVHVIGNLPFNVSTYLIIKWLR 1192

Query: 140  A-----DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            A       +      LTL FQKEVG R+ A   + H  RLSV+  + +     F I    
Sbjct: 1193 AMSLHEGPFVYGRTLLTLTFQKEVGLRMLAPIFNRHRCRLSVMCQYLSDVKRKFTIPGRA 1252

Query: 195  FFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQS--------LKRLG 245
              PSP V   V+ F P + P IP   + ++K  +  F  R K   +         LK+  
Sbjct: 1253 CVPSPDVDVAVMQFRPKVTPVIPHHFDLVEKFCRHVFHYRNKYCIRGIETLFPDFLKKDF 1312

Query: 246  GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
               +L  A +   L    L+IE+   +  I  +  
Sbjct: 1313 SHEILRFARVSPKLAPPALAIEEIRDMCKIYEEQC 1347


>gi|296119337|ref|ZP_06837905.1| rRNA adenine N-6-methyltransferase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967729|gb|EFG80986.1| rRNA adenine N-6-methyltransferase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 264

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 104/263 (39%), Gaps = 26/263 (9%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D  I K + +   +  G  +IEIG G G LT  L TL  R +  +E D  
Sbjct: 8   RHEHGQNFLNDKTIQKAVIDRVKATAG-PIIEIGPGAGALTNHLSTLD-RPLTAVEIDGS 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               LK     HP   EI+  D L     +     +P  I+ NLP++  T +L + + A 
Sbjct: 66  LVHHLKQHL--HPGA-EIVHGDFLHYRLPE-----TPFVIVGNLPFHQITAMLRHILHA- 116

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W    L+ Q EV  R  +   +     ++          +   +  H F P+P V
Sbjct: 117 ---PRWTHAVLIVQWEVASRRASIGGATM---MTAQWWPWFDFELGQRVPAHSFTPAPSV 170

Query: 202 TSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA------ 253
              ++       P+      ++ + +  + F  R + + Q   R+   N   QA      
Sbjct: 171 DGGLLTIARRTRPLLPRQERKAFQSMVHKVFTGRGRGIVQIASRMKLFNDARQARKWALD 230

Query: 254 -GIETNLRAENLSIEDFCRITNI 275
            G++     ++LS   +  +  +
Sbjct: 231 SGLKHTALPKDLSAHHWVDLYRV 253


>gi|332969210|gb|EGK08240.1| rRNA (adenine-N(6)-)-methyltransferase [Desmospora sp. 8437]
          Length = 283

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ + +  ++K++ + S       V+EIGAG GNLT  L    ++KV+ +E D  F   
Sbjct: 28  GQHLMHNKGLIKELVKISEVNRQDLVLEIGAGTGNLTMPLAE-KSKKVLAVENDPVFAER 86

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L+       N +E+IQ D L+++  +      P  ++AN+PY+I T +L       T P 
Sbjct: 87  LQRKIESVSN-IEVIQQDFLQMNLPRV-----PFSVVANIPYSITTPILGKLFDRPTVP- 139

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
                 L+ +K   +R TA   +       +      +  M   I PH F P P+V S +
Sbjct: 140 -IRRAVLVMEKGAAKRFTADPITNPRI---LKWRMWFEMKMGRTIPPHHFSPPPRVDSAI 195

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTL--RQSLKRLGGENLLHQA 253
           +       P+       + +    FG +   L    +LK +     L + 
Sbjct: 196 LTLWRRDQPMVALRHHSRFMALATFGLKSPQLPVSLALKGVFTPPQLKRL 245


>gi|312109334|ref|YP_003987650.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1]
 gi|311214435|gb|ADP73039.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1]
          Length = 284

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 20/247 (8%)

Query: 15  SHYKIIPKKYM------GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +      +KY+      GQ+ L +  I+  + + +      TV+++GAG G LT  +   
Sbjct: 5   NKRNHRTRKYIEWPNFSGQHLLHNKRIINDLIQIANLTSNDTVLDLGAGKGALTFPVAE- 63

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            A KVI +E D +F  ILK  +  +PN +++IQ D LK           P  ++A +PY 
Sbjct: 64  KAGKVIAVEYDPRFVEILKKKAEAYPN-IKVIQQDILK-----LRLPKEPFIVVAGIPYA 117

Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
           I T ++   +         +   L+ +K   +R T+   +     L +          + 
Sbjct: 118 ITTPIMKMLLHQPANS--LQRAVLVMEKGAAKRFTSYPITN---PLILKWRMWFDLGYVR 172

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           +IS   F P PKV S ++               +S   + + A    +  L ++LK +  
Sbjct: 173 EISRENFSPPPKVDSAILIIRRKKKLSIPYKYYDSFLGLAEYALKYPQLPLYEALKGVFT 232

Query: 247 ENLLHQA 253
              + + 
Sbjct: 233 PPQITRL 239


>gi|59938862|gb|AAX12190.1| erythromycin ribosome methylase [Enterococcus faecium]
          Length = 243

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 4   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 62

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 63  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 117

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 118 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 168

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 169 VLIKLTRHTTDVPDKYWKL----YTYFV--SKLVNREYRQLFTKNQFHQAMKHAK--VNN 220

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 221 LSTVTYEQVLSIFN 234


>gi|225573472|ref|ZP_03782227.1| hypothetical protein RUMHYD_01664 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039163|gb|EEG49409.1| hypothetical protein RUMHYD_01664 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 93/242 (38%), Gaps = 23/242 (9%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LS 265
           LS
Sbjct: 223 LS 224


>gi|22164060|dbj|BAC07277.1| 23S rRNA methylase [Escherichia coli]
          Length = 245

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDNHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P P+V S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPRVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 222

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 223 LSTVTYEQVLSIFN 236


>gi|28373207|ref|NP_783844.1| erythromycin resistance protein [Lactobacillus fermentum]
 gi|28273050|emb|CAD32685.1| erythromycin resistance protein [Lactobacillus fermentum]
          Length = 245

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 96/252 (38%), Gaps = 26/252 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + +I  +        +IEIG+G G+ T  L       V  IE D +   I
Sbjct: 8   SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFTFELAKRC-NYVTAIEIDPKLCRI 66

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            K+   ++ N  ++I  D L+  F K    +   +I  ++PYNI T ++   +   T   
Sbjct: 67  TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIFGSIPYNISTDIIRKIVFESTATE 121

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K +     +         L++        +++  I    F P PKV S +
Sbjct: 122 SYLIVEYGFAKRLLNTNRS---------LALFLMTEVDISILSKIPREYFHPKPKVNSVL 172

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
           I    H   +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 173 IKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 224

Query: 266 I---EDFCRITN 274
               E    I N
Sbjct: 225 TITYEQVLSIFN 236


>gi|255548465|ref|XP_002515289.1| dimethyladenosine transferase, putative [Ricinus communis]
 gi|223545769|gb|EEF47273.1| dimethyladenosine transferase, putative [Ricinus communis]
          Length = 177

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 14/181 (7%)

Query: 6   KSHSLKTILSHY--KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           K    K   +HY   I   K  GQ+ L +  ++  I + SG      ++EIG G GNLT+
Sbjct: 7   KKQKPKQSSNHYQGGISFHKSKGQHILKNPLLVDTIVQKSGIKSTYVILEIGPGTGNLTK 66

Query: 64  MLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
            LL  G + V+++     +F        +   P  L +IQ D LK D   +         
Sbjct: 67  KLLEAG-KMVLLLNLILVWFSSSSAAFRAPLCPIELLVIQGDVLKTDLPYY------DIC 119

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
           +AN+PY I + L F  ++     P +    ++FQ+E   R  AQ     Y RLSV T   
Sbjct: 120 VANIPYQISSPLTFKLLNHQ---PSFRCAIIMFQREFAMRFVAQPGDTLYCRLSVNTQTL 176

Query: 182 T 182
            
Sbjct: 177 C 177


>gi|392560|gb|AAA73396.1| adenine methylase [Streptococcus agalactiae]
 gi|30314839|emb|CAD70614.1| adenine methylase [Plasmid pIlo8]
          Length = 244

 Score =  131 bits (331), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 94/254 (37%), Gaps = 27/254 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  +   K + IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTIELDSHLF 63

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 64  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 118

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 119 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 169

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 170 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 221

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 222 LSTITYEQVLSIFN 235


>gi|1169553|sp|P45438|ERMK_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|143195|gb|AAA22595.1| erythromycin-inducible 23S ribosomal RNA methylase [Bacillus
           licheniformis]
          Length = 287

 Score =  131 bits (331), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 112/271 (41%), Gaps = 44/271 (16%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ + +  ++++I + +      TV+E+GAG G LT ML +  A KV+ +E D +F  I
Sbjct: 23  GQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTML-SQKAGKVLAVENDSKFVAI 81

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   ++QHPN  +II  D +K+   K         +++N+PY I T ++   ++      
Sbjct: 82  LTRKTAQHPNT-KIIHQDIMKIHLPK-----EKFVVVSNIPYAITTPIMKMLLNNPA--S 133

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            ++   ++ +K   +R T++     Y    +         ++ +IS   F P PKV S +
Sbjct: 134 GFQKGIIVMEKGAAKRFTSKFIKNSYV---LAWRMWFDIGIVREISKEHFSPPPKVDSAM 190

Query: 206 IHFIPHLNPIPCCLESLKKI------------------TQEAFGKRR-KTLRQSLKRLGG 246
           +      +  P   +                        +  F  R+ K LR+SLK    
Sbjct: 191 VRITRKKD-APLSHKHYIAFLGLAEYALKEPQAPFCVALRGIFTPRQMKHLRKSLK---- 245

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILT 277
                   I        L+   +  I N +T
Sbjct: 246 --------INNEKTVGTLTENQWAVIFNTMT 268


>gi|155965920|gb|ABU40942.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 231

 Score =  131 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 23/242 (9%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 3   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 61

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 62  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 116

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 117 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 167

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 168 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 219

Query: 264 LS 265
           LS
Sbjct: 220 LS 221


>gi|113196878|gb|ABI31739.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
          Length = 219

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 21/235 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            +I    H   +P     L       F    K + +  ++L  +N  HQA     
Sbjct: 171 ALIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 219


>gi|330721180|gb|EGG99294.1| Dimethyladenosine transferase [gamma proteobacterium IMCC2047]
          Length = 112

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 177 LTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH-LNPIPC-CLESLKKITQEAFGKRR 234
           +  +  +   +F + P  F P PKV S ++   P+   PIP    + L  +   AF +RR
Sbjct: 1   MVQYHCQVESLFKVPPTAFDPQPKVDSAIVRLTPYDKPPIPALDHKQLSSVVTTAFNQRR 60

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           KT+R +LK+L     L   GI+  LR E L++++F  I++ LT
Sbjct: 61  KTIRNNLKKLISTEQLEALGIDPGLRPEKLTLQNFVAISDTLT 103


>gi|2326851|emb|CAA70207.1| adenine methylase [Staphylococcus haemolyticus]
          Length = 244

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|296230789|ref|XP_002760889.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like
           [Callithrix jacchus]
          Length = 398

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 107/296 (36%), Gaps = 53/296 (17%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                       +E   GPG LTQ LL +GA KV+ +E D+ F P L+ +      +L +
Sbjct: 89  VRGKEKKPSHLFLECNPGPGILTQALLEVGA-KVVALESDKTFLPHLESLGKNLDGKLRV 147

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG---------------------------TR 132
           I  D  ++D +    I  P     +L   +G                            +
Sbjct: 148 IYCDFFRMDPKGTGAIKPPAMASQDLFQTLGLEVVPWKAGIPLKVIGALPIRSERKILWK 207

Query: 133 LLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           L+ N  S  +   +   E   L+++KE  + +    N   Y  LSVL        ++  +
Sbjct: 208 LIHNLYSCTSIYKYGRIELNVLIYEKEFQKLMADPGNPDLYQVLSVLWQVACDIKVLHKV 267

Query: 191 SPHVFFPSPKVTSTVIH---------------FIPHLNPI-----PCCLESLKKITQEAF 230
           S  + F       T  H                 P+ N       P   +    + +  F
Sbjct: 268 SKILLFKKEFCLETESHSELLEPSQEKLYFIQITPYRNLFTDNLTPMSYQVFIHMVKHCF 327

Query: 231 GKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           GKR+  L    +SL  L  +++L Q G +   +  NL  +DF ++   +  ++D A
Sbjct: 328 GKRKCRLIDHLRSLTPLDAKDILRQIGKKKEDKVTNLYPQDFKQLFETIQSSKDYA 383


>gi|157058876|gb|ABV03165.1| ErmC [Cloning vector pJL-ES]
 gi|157058879|gb|ABV03167.1| ErmC [Cloning vector pJL-proES]
          Length = 244

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 100/254 (39%), Gaps = 24/254 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           I      + I    +         F  +   K  ++   +    N L  AGI+      N
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVMKWVNKKYKKIFTKNQFNNSLKHAGIDDL---NN 226

Query: 264 LSIEDFCRITNILT 277
           +S E F  + N   
Sbjct: 227 ISFEQFLSLFNSYK 240


>gi|282165916|gb|ADA79936.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein)
           [Staphylococcus aureus]
          Length = 244

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
               + L+ +    +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IANEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLSRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|49489776|ref|YP_025321.1| hypothetical protein pE194p5 [Staphylococcus aureus]
 gi|127193|sp|P02979|ERMC1_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|16902901|gb|AAL30371.1|AF424805_2 adenine methylase [Transposon mutagenesis vector pRL692]
 gi|46558|emb|CAA24591.1| unnamed protein product [Staphylococcus aureus]
 gi|209127|gb|AAA72303.1| erythromycin resistance determinant [unidentified cloning vector]
 gi|1185576|gb|AAB40308.1| erythromycin resistance; erythromycin resistance determinant
           [Cloning vector pDG1728]
 gi|1185582|gb|AAB40313.1| erythromycin resistance; erythromycin resistance determinant
           [Cloning vector pDG1730]
 gi|1185608|gb|AAB40336.1| erythromycin resistance; erythromycin resistance determinant
           [Cloning vector pDG1729]
 gi|1185616|gb|AAB40343.1| erythromicin resistance; erythromycin resistance determinant
           [Cloning vector pDG1731]
 gi|1638844|emb|CAA57985.1| adenine methylase [Staphylococcus equorum subsp. equorum]
 gi|5327232|emb|CAB46341.1| adenine methylase [Staphylococcus aureus]
 gi|11545512|gb|AAG37883.1| erythromycin resistance [Tn10 delivery vector pHV1248]
 gi|11545518|gb|AAG37888.1| erythromycin resistance [Tn10 delivery vector pHV1249]
 gi|37496520|emb|CAD50595.1| adenine methylase [Cloning vector pUvBBAC]
 gi|50345956|gb|AAT74896.1| erythromycin-resistance protein [Anabaena transfer vector pRL2665b]
 gi|50949217|emb|CAF31657.1| rRNA adenine N-6-methyltransferase [Cloning vector pGID052]
 gi|83659404|gb|ABC40606.1| adenine methylase [Cloning vector pHP13]
 gi|156523812|gb|ABU68999.1| Erm [Cloning vector pHB518]
          Length = 244

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIYGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
               + L+ +    +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IANEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLSRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|9507389|ref|NP_040475.1| 23S RNA methylase [Plasmid pT48]
 gi|253730996|ref|ZP_04865161.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253735006|ref|ZP_04869171.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|127195|sp|P13978|ERMC3_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|455358|gb|AAA20192.1| 23S RNA methylase [Plasmid pT48]
 gi|253725266|gb|EES93995.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253727019|gb|EES95748.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH130]
          Length = 244

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 103/256 (40%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|82749774|ref|YP_415516.1| rRNA methylase [Staphylococcus saprophyticus]
 gi|82653299|emb|CAJ43792.1| rRNA methylase [Staphylococcus saprophyticus]
          Length = 244

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKVV----FES 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             +   L+ + E  +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IADESYLIVEYEFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISYKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNKSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|9507309|ref|NP_040407.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid
           pIM13]
 gi|15676003|ref|NP_273130.1| rRNA adenine N-6-methyltransferase [Neisseria meningitidis MC58]
 gi|60677343|ref|YP_209657.1| rRNA methylase [Staphylococcus lentus]
 gi|188039007|ref|YP_001901404.1| ErmC [Staphylococcus aureus]
 gi|188039010|ref|YP_001901402.1| ErmC [Staphylococcus aureus]
 gi|253316335|ref|ZP_04839548.1| ErmC [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|258420075|ref|ZP_05683031.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus A9719]
 gi|258445548|ref|ZP_05693733.1| MlsR [Staphylococcus aureus A6300]
 gi|282929333|ref|ZP_06336901.1| rRNA (adenine-N6-)-methyltransferase [Staphylococcus aureus A9765]
 gi|127198|sp|P13956|ERM_BACSU RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|11256781|pir||A81241 rRNA adenine N-6-methyltransferase NMB0066 [imported] - Neisseria
           meningitidis (strain MC58 serogroup B)
 gi|4699789|pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
 gi|4699790|pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
 gi|7546361|pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 gi|7546362|pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 gi|7546363|pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 gi|7546364|pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 gi|149052|gb|AAA98136.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid
           pIM13]
 gi|7225287|gb|AAF40534.1| rRNA adenine N-6-methyltransferase; foreign cassette inserted to
           disrupt SiaD (NMB0067) to reduce virulence [Neisseria
           meningitidis MC58]
 gi|14324127|gb|AAK58461.1| ErmC [Cloning vector pIDN4]
 gi|28412258|gb|AAO39978.1| MlsR [Shuttle vector pSOS96]
 gi|28412265|gb|AAO39984.1| MlsR [Shuttle vector pSOS94]
 gi|28412272|gb|AAO39990.1| MlsR [Shuttle vector pSOS95]
 gi|33520710|gb|AAQ21191.1| MlsR [Reporter vector pGUSA]
 gi|60416749|emb|CAI59792.1| rRNA methylase [Staphylococcus lentus]
 gi|164416076|gb|ABY53434.1| ErmC [Staphylococcus aureus]
 gi|164416079|gb|ABY53436.1| ErmC [Staphylococcus aureus]
 gi|257843938|gb|EEV68331.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus A9719]
 gi|257855644|gb|EEV78574.1| MlsR [Staphylococcus aureus A6300]
 gi|270055323|gb|ACZ58816.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein)
           [Staphylococcus aureus]
 gi|270300163|gb|ACZ68969.1| rRNA adenine N-6-methyltransferase,
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein)
           [Staphylococcus aureus]
 gi|282591833|gb|EFB96884.1| rRNA (adenine-N6-)-methyltransferase [Staphylococcus aureus A9765]
 gi|291032710|gb|ADD71856.1| dimethyladenosine transferase [Staphylococcus aureus]
 gi|304389165|gb|ADM29196.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
          Length = 244

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|113196886|gb|ABI31743.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196894|gb|ABI31747.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196896|gb|ABI31748.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196898|gb|ABI31749.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
          Length = 219

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 21/235 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            +I    H   +P     L       F    K + +  ++L  +N  HQA     
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 219


>gi|5668894|gb|AAD46055.1|AF076212_5 adenine methylase [Promoter screenings vector pMM223]
 gi|5668900|gb|AAD46060.1|AF076213_5 adenine methylase [Promoter screenings vector pMM225]
          Length = 244

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D ++  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDIMQFKFPK----NQSYKIYGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
               + L+ +    +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IANEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLSRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|56759186|gb|AAW27733.1| SJCHGC05919 protein [Schistosoma japonicum]
          Length = 289

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 13/171 (7%)

Query: 116 SSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
           S  + +I NLP++I T L+  W+         W     SLTL FQKEV ER+ A      
Sbjct: 61  SPRMFVIGNLPFSISTPLISRWLHDIAERRGIWRYGRVSLTLTFQKEVAERLAADVWDEQ 120

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEA 229
             RLS+++        M DI    F P PKV   V+   P   P IP     ++K+ ++A
Sbjct: 121 RSRLSIMSQAYCDVKYMKDIPGTAFVPPPKVDVGVVRLTPLKEPLIPVPYPYVEKLVRQA 180

Query: 230 FGKRRKTLRQSLKRLGGEN-------LLHQAGIETNLRAENLSIEDFCRIT 273
           F  R+K + + L+ L   +       L  +AG++   +   L++ +F  + 
Sbjct: 181 FHFRQKQIIRCLETLFPSDRPELVIQLFKEAGVQPVKQCIQLTMPEFRDLC 231


>gi|315301058|ref|ZP_07872369.1| dimethyladenosine transferase [Listeria ivanovii FSL F6-596]
 gi|313630573|gb|EFR98395.1| dimethyladenosine transferase [Listeria ivanovii FSL F6-596]
          Length = 128

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            IL  Y  + KK +GQNFL+D NIL +I +++       VIEIG G G LT+ L    A+
Sbjct: 13  EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEINKETNVIEIGPGIGALTEQLAK-AAK 71

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-----FFNISSPIRIIAN 124
           +V+  E DQ+  PIL D  S + N ++++  D LK + E+     F +   P++I+AN
Sbjct: 72  EVVAFEIDQRLLPILDDTLSAYDN-IKVVHGDVLKANVEEVISTQFTHPELPLKIVAN 128


>gi|220897976|gb|ACL81266.1| erythromycin resistance protein [Lactobacillus reuteri]
          Length = 244

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKVV----FES 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++L       +++  +    F P PKV S +
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSAL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLKRKKSRISYKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNKSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|68535048|ref|YP_254597.1| hypothetical protein pSHaeB01 [Staphylococcus haemolyticus
           JCSC1435]
 gi|68448409|dbj|BAE05991.1| ermC [Staphylococcus haemolyticus JCSC1435]
          Length = 244

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGDFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|3294231|emb|CAA11706.1| mono-methyl transferase [Streptomyces ambofaciens]
          Length = 259

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 108/267 (40%), Gaps = 27/267 (10%)

Query: 23  KYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           + + QNFL D      +A   +        V+E+GAG G LT+ L    +R++   E D 
Sbjct: 9   RTLSQNFLADRAAAAHVARLTAPDRRHPPLVLEVGAGKGALTEPLARR-SRELHAYEIDS 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +  P L+   +  P+ + ++  D L     +     +P  +  N+P++    ++   + A
Sbjct: 68  RLVPGLRTRFAAAPH-VRVVAGDFLAARPPR-----TPFSVAGNVPFSRTADIVDWCLGA 121

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGR---LSVLTGWRTKATMMFDISPHVFFP 197
               P     TL+ Q E      A+K +  YGR   L+V T    +  ++  +S + F P
Sbjct: 122 ----PALTDATLITQLEY-----ARKRTGDYGRWTLLTVRTWPHHEWRLVGRVSRYGFRP 172

Query: 198 SPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLH 251
           +P+V + V+       P+         + + +  F     +L  SL+R       +    
Sbjct: 173 APRVDAGVLRIERRATPLLTGAAQHGWRDLVELGFSGVGGSLHASLRRAHPRRRVDAAFR 232

Query: 252 QAGIETNLRAENLSIEDFCRITNILTD 278
            A ++  +    ++   + R+   L  
Sbjct: 233 AARLDPGVLVGEVAPARWLRLHEELAS 259


>gi|37359459|gb|AAP74657.1| ribosomal methylase Erm34 [Bacillus clausii]
          Length = 281

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 103/257 (40%), Gaps = 18/257 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+F+ +  +LK+I + +      TV+E+GAG G LT +L    A +V+ +E DQ+    
Sbjct: 23  GQHFMHNKRLLKEIVDKADVSVRDTVLELGAGKGALTTILSER-ADRVLAVEYDQKCIEA 81

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L+       N + I+  D +KV        + P  +++N+PY+I T ++   ++      
Sbjct: 82  LQWKLVGSKN-VSILHQDIMKV-----ALPTEPFVVVSNIPYSITTAIMKMLLNNPK--N 133

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             +   ++ +K   +R T+      Y    +             IS   F P PKV S +
Sbjct: 134 KLQRGAIVMEKGAAKRFTSVSPKDAYV---MAWHMWFDIHYERGISRSSFSPPPKVDSAL 190

Query: 206 IHFIPHLNP--IPCCLESLKKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNL 259
           +  +   +P       +++      A    R    + LR        + +    G++   
Sbjct: 191 VRIVRKQHPLFPYKEAKAMHDFLSYALNNPRAPLDQVLRGIFTAPQAKKVRQAIGVKPET 250

Query: 260 RAENLSIEDFCRITNIL 276
               L    +  + + +
Sbjct: 251 PVAMLHARQWAMVCDAM 267


>gi|330997743|ref|ZP_08321583.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569940|gb|EGG51696.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella
           xylaniphila YIT 11841]
          Length = 285

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 111/259 (42%), Gaps = 25/259 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D 
Sbjct: 26  PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 84

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+ + S   N ++++  D       KF     P ++++N+PY I + + F  +  
Sbjct: 85  ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 137

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           ++   F    +++ Q E  +++ ++     Y   +V         +++++ P  FFP P 
Sbjct: 138 ESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFFPPPT 193

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLH 251
           V S +++            +   K    AF            KT L+   ++    ++  
Sbjct: 194 VKSALLNIKRKQ----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISE 249

Query: 252 QAGIETNLRAENLSIEDFC 270
           + G+  N +   LS   + 
Sbjct: 250 KFGLNLNAQIVCLSPSQWV 268


>gi|1169552|sp|Q03986|ERMD_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|143201|gb|AAA22599.1| macrolide-lincosamide-streptogramin B resistance methylase
           [Bacillus licheniformis]
          Length = 287

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 113/259 (43%), Gaps = 20/259 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ + +  ++++I + +      TV+E+GAG G LT +L +  A KV+ +E D +F  I
Sbjct: 23  GQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTVL-SQKAGKVLAVENDSKFVDI 81

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   ++QH N  +II  D +K+   K         +++N+PY I T ++   ++      
Sbjct: 82  LTRKTAQHSNT-KIIHQDIMKIHLPK-----EKFVVVSNIPYAITTPIMKMLLNNPA--S 133

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            ++   ++ +K   +R T++     Y    +         ++ +IS   F P PKV S +
Sbjct: 134 GFQKGIIVMEKGAAKRFTSKFIKNSYV---LAWRMWFDIGIVREISKEHFSPPPKVDSAM 190

Query: 206 IHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           +      +  P   +   + + + + A  +    L  +L+ +     +        +  E
Sbjct: 191 VRITRKKD-APLSHKHYIAFRGLAEYALKEPNIPLCVALRGIFTPRQMKHLRKSLKINNE 249

Query: 263 ----NLSIEDFCRITNILT 277
                L+   +  I N +T
Sbjct: 250 KTVGTLTENQWAVIFNTMT 268


>gi|260170953|ref|ZP_05757365.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D2]
 gi|265755244|ref|ZP_06090014.1| clindamycin resistance determinant [Bacteroides sp. 3_1_33FAA]
 gi|298482352|ref|ZP_07000538.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D22]
 gi|315919274|ref|ZP_07915514.1| clindamycin resistance determinant [Bacteroides sp. D2]
 gi|317477408|ref|ZP_07936637.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA]
 gi|325299659|ref|YP_004259576.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides salanitronis
           DSM 18170]
 gi|263234386|gb|EEZ19976.1| clindamycin resistance determinant [Bacteroides sp. 3_1_33FAA]
 gi|298271331|gb|EFI12906.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D22]
 gi|313693149|gb|EFS29984.1| clindamycin resistance determinant [Bacteroides sp. D2]
 gi|316906427|gb|EFV28152.1| ribosomal RNA adenine dimethylase [Bacteroides eggerthii 1_2_48FAA]
 gi|324319212|gb|ADY37103.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides salanitronis
           DSM 18170]
          Length = 266

 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 111/259 (42%), Gaps = 25/259 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D 
Sbjct: 7   PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+ + S   N ++++  D       KF     P ++++N+PY I + + F  +  
Sbjct: 66  ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           ++   F    +++ Q E  +++ ++     Y   +V         +++++ P  FFP P 
Sbjct: 119 ESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFFPPPT 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLH 251
           V S +++            +   K    AF            KT L+   ++    ++  
Sbjct: 175 VKSALLNIKRKQ----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISE 230

Query: 252 QAGIETNLRAENLSIEDFC 270
           + G+  N +   LS   + 
Sbjct: 231 KFGLNLNAQIVCLSPSQWV 249


>gi|113196882|gb|ABI31741.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196890|gb|ABI31745.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
          Length = 219

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 21/235 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            +I    H   +P     L       F    K + +  ++L  +N  HQA     
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 219


>gi|47219520|emb|CAG09874.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 286

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 95/256 (37%), Gaps = 60/256 (23%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
              ++  ++  Y +  +K + QNFLLDL +  KI   +G L G  V E+G GPG LT+ +
Sbjct: 14  PLPTVGELIKLYNLRAEKQLSQNFLLDLKLTDKIVRQAGCLKGAHVCEVGPGPGGLTRSI 73

Query: 66  LTLGARKVIVIEKDQQF------------------------------FPILKDISSQHPN 95
           L  GA  ++V+EKD +F                               P+L+ +S   P 
Sbjct: 74  LNAGAADLLVVEKDSRFIPGLKVKLAAGTASSRLFVQPSRCDGVAFNIPVLQLLSEAAPG 133

Query: 96  RLEIIQDDALKVDFEKFF---------NISSPIRIIANLPYNIGTRLLFNWISA------ 140
           RL I+  D L    ++ F              + +I NLP+N+ T L+  W+        
Sbjct: 134 RLRIVHGDILTYRMDRGFLGMTSKTWQEDPPNLHVIGNLPFNVSTPLIIKWLENIANQSG 193

Query: 141 ----DTWPPFWESLTLLFQKEVGERI--TAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
                T PP  +      ++   +    T + +  H                 F      
Sbjct: 194 PFRLRTHPPHADIPEGGGREADSQYGQQTEEPSLHHGSVPLHGPQLLHHPRKAF------ 247

Query: 195 FFPSPKVTSTVIHFIP 210
               PK   TV+  +P
Sbjct: 248 ---VPKPQQTVVRALP 260


>gi|168705804|ref|ZP_02738081.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246]
          Length = 208

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 25/204 (12%)

Query: 95  NRLEIIQDDAL------------KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
           + +  +  DAL              D        +  +++ANLPY I T L+ N +    
Sbjct: 7   SNVRFVFGDALAKKSELNPDMLSTWDAAAKEVGCTRKKLVANLPYVIATPLISNLLIGH- 65

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
             P  E + ++ Q E+ ER+ A  N+  Y  LSVL         +  ++P  F P PKV 
Sbjct: 66  --PEIERMVVMVQWEIAERMKAVPNTKDYNALSVLVQSVADVETVRKVAPTNFHPRPKVD 123

Query: 203 STVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG--------ENLLHQ 252
           S ++   P+         +   +   ++ +  RRK LRQ+L             +  L +
Sbjct: 124 SAIVLIKPNAEKRAKVGDVMKFRIFLRDLYVHRRKNLRQALVGWPTGPREKKDVDAKLAE 183

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
            GI+  LR+E L IE   R+  + 
Sbjct: 184 LGIDGTLRSEALDIEQHLRLAAVF 207


>gi|127194|sp|P13957|ERMC2_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|8927568|gb|AAF82122.1|AF276982_3 erythromycin resistance [Integrative vector pNLE1]
 gi|153065|gb|AAA98228.1| ermC [Plasmid pE5]
          Length = 244

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P P+V S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPRVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|71558999|ref|YP_271816.1| ErmC [Staphylococcus aureus]
 gi|68270937|gb|AAY88963.1| ErmC [Staphylococcus aureus]
          Length = 244

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVDKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|56965270|ref|YP_177002.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16]
 gi|56911514|dbj|BAD66041.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16]
          Length = 281

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 12/190 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+F+ +  +LK+I + +      TV+E+GAG G LT +L    A +V+ +E DQ+    
Sbjct: 23  GQHFMHNKRLLKEIVDKADVSVRDTVLELGAGKGALTTILSER-ADRVLAVEFDQKCVEA 81

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L+       N + I+  D +KV        + P  +++N+PY I T ++   ++      
Sbjct: 82  LQWKLVGSKN-VSILHQDIMKVTLP-----TEPFVVVSNIPYAITTAIMKMLLNNPK--N 133

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             +   ++ +K   +R T+      Y    +             IS   F P PKV S +
Sbjct: 134 KLQRGAIVMEKGAAKRFTSVSPKDAYV---MAWHMWFDIHYERGISRSAFSPPPKVDSAL 190

Query: 206 IHFIPHLNPI 215
           +  +   +P+
Sbjct: 191 VRIVRKQHPL 200


>gi|183220525|ref|YP_001838521.1| putative dimethyladenosine transferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778947|gb|ABZ97245.1| Putative dimethyladenosine transferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 256

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 104/263 (39%), Gaps = 37/263 (14%)

Query: 39  IAESSGSL--DGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHP 94
           I   +  L  +G   + EIG G G LT  +L L  ++  + E D  +  + K +I  + P
Sbjct: 4   IVNVAKPLFSEGDVTLAEIGIGLGTLTYPILCLE-KETDLFEIDHAYIQLAKDEILPKFP 62

Query: 95  NRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           + + +   DAL    E  F+I    + +  NLPY++ T ++   I        ++    +
Sbjct: 63  HAI-LHAGDAL----ENLFHIYPKKVFVFGNLPYHLTTEIINTLIINCRH---FQGGIFM 114

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL- 212
            QKE  ER+           LSV      +   +  +  + FFP PK+ S ++   P   
Sbjct: 115 VQKEFAERLV-----KETSSLSVFLSAFCEIKFLKTVHKNCFFPIPKIHSALLLLTPKQK 169

Query: 213 -------NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----------LLHQAGI 255
                        +E   ++ +  F  +RK ++ SL+     N           L ++ I
Sbjct: 170 VGNNQWSPQSNEGVEIWSRMLRTLFWGKRKQIQVSLRESPFSNDPMFRDALGEALLRSQI 229

Query: 256 ETNLRAENLSIEDFCRITNILTD 278
               R E L+ E F  +   L D
Sbjct: 230 PPTKRPEELNREQFLNLGQHLLD 252


>gi|113196880|gb|ABI31740.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196884|gb|ABI31742.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196888|gb|ABI31744.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
 gi|113196892|gb|ABI31746.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
          Length = 219

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 21/235 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            +I    H   +P     L       F    K + +  ++L  +N  HQA     
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 219


>gi|297203193|ref|ZP_06920590.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083]
 gi|197717356|gb|EDY61390.1| dimethyladenosine transferase [Streptomyces sviceus ATCC 29083]
          Length = 258

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 105/263 (39%), Gaps = 20/263 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            + + QNFL D     ++A  +        ++E+GAG G LT++L     R ++  E D+
Sbjct: 8   SRALSQNFLTDRAAAARLARLAVPRPKNPLLLEVGAGKGALTELLAPRC-RTLLAYEIDE 66

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +  P+L    S  P ++ +I  D L     +     +   +  N+P++    ++   + A
Sbjct: 67  RLVPVLAARFSGTP-QVRVIGGDFLAARPPR-----TAFSVAGNVPFSRTAAIVDWCLRA 120

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
               P     TLL Q E   + T    S  +  L+VL   R +  +   +    F P P+
Sbjct: 121 ----PALTDATLLTQVEYARKRTGDYGS--WTLLTVLNWPRYEWRLAGLVGRRSFRPVPR 174

Query: 201 VTSTVIHFIPHLNP--IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAG 254
           V + ++       P   P  L   + + +  F     +L  SL R             A 
Sbjct: 175 VDAGILRIERRGVPLLPPGALPGWRHLVELGFSGVGGSLHASLCRAHPRRRVDAGFRAAR 234

Query: 255 IETNLRAENLSIEDFCRITNILT 277
           ++ ++    ++ E + R+  +L 
Sbjct: 235 LDRDVLVGEVAPERWLRLHEVLA 257


>gi|9507371|ref|NP_040462.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid
           pNE131]
 gi|127201|sp|P06572|ERMM_STAEP RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|150831|gb|AAA98296.1| macrolide-lincosamide-streptogramin B-resistance protein [Plasmid
           pNE131]
          Length = 244

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S      ++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----FALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|15612943|ref|NP_241246.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125]
 gi|5822819|dbj|BAA83962.1| ERMK [Bacillus halodurans]
 gi|10172993|dbj|BAB04099.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125]
          Length = 284

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 88/202 (43%), Gaps = 14/202 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ + +  +L++I + +      TV+E+GAG G LT  L    A++V+ +E DQ F  +
Sbjct: 23  GQHLMHNKKLLQEIVDQAKVSKKDTVLELGAGKGALTTFLSER-AKRVLAVEYDQTFIQV 81

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L    +   N   II +D +++   K         +++N+PY+I T ++   +S      
Sbjct: 82  LNRKMAHAANT-TIIHEDIMRIHLPK-----GEFVVVSNIPYSITTPIMKKLLSNPV--S 133

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            ++   ++ +K   +R T+      Y    +          +  IS   F P PKV S +
Sbjct: 134 GFQRGVIVMEKGAAKRFTSPFIKNAYV---LAWRMWFDLEYVKGISRECFSPPPKVDSAM 190

Query: 206 IHFIPHLNPIPC--CLESLKKI 225
           +      +PI       +   +
Sbjct: 191 VFISRKPDPIVPYKDRSAFFGL 212


>gi|32455918|ref|NP_862543.1| methylase ermT [Plasmid p121BS]
 gi|11527994|gb|AAG37071.1|AF310974_2 methylase ermT [Plasmid p121BS]
          Length = 244

 Score =  128 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 30/257 (11%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + +I  +        +IEIG+G G+ T  L       V  IE D +   I
Sbjct: 9   SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFTLELAKRC-NYVTAIEIDPKLCRI 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            K+   ++ N  ++I  D L+  F K    +   +I  N+PYNI T ++   +   T   
Sbjct: 68  TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K +     +         L++        +++  I    F P P+V S++
Sbjct: 123 SYLIVEYGFAKRLLNTNRS---------LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173

Query: 206 IHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNLR 260
           I    H + I     +  +           K + +  ++L  +N  +Q    A I+    
Sbjct: 174 IVLKRHPSKISLKDRKQYENFV-------MKWVNKEYRKLFSKNQFYQALKYARIDDL-- 224

Query: 261 AENLSIEDFCRITNILT 277
             N+S E F  + N   
Sbjct: 225 -NNISFEQFLSLFNSYK 240


>gi|293367853|ref|ZP_06614498.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318022|gb|EFE58423.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 244

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKVV----FES 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             +   L+ +    +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IADESYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISYKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNKSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|307091952|gb|ADN28311.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 123

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/124 (44%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           LDLN+  +IA ++GSL+  T++EIG GPG LT+ LL LGAR+VI +E+D +    L++++
Sbjct: 1   LDLNLTARIARAAGSLETHTIVEIGPGPGGLTRALLALGARRVIAVERDDRAIVALQEVA 60

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +++P RL+I+  DAL+ D           +I+ANLPYN  T LL  W+SA+ WPP+++++
Sbjct: 61  ARYPGRLDIVAADALEFDPRPMLG-GDRAKIVANLPYNTATVLLTGWLSAEPWPPWYDAM 119

Query: 151 TLLF 154
            L+F
Sbjct: 120 VLMF 123


>gi|294776564|ref|ZP_06742037.1| ribosomal RNA adenine dimethylase family protein [Bacteroides
           vulgatus PC510]
 gi|294449620|gb|EFG18147.1| ribosomal RNA adenine dimethylase family protein [Bacteroides
           vulgatus PC510]
          Length = 261

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 112/260 (43%), Gaps = 25/260 (9%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D
Sbjct: 1   MPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLRI-ANNVVAIEND 59

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 L+ + S   N ++++  D    +  KF     P ++++N+PY I + + F  + 
Sbjct: 60  TALVEHLRKLFSDARN-VQVVGCDFRNFEVPKF-----PFKVVSNIPYGITSDI-FKILM 112

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            ++   F    +++ Q E  +++ ++     Y   +V         +++++ P  F P P
Sbjct: 113 FESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPP 168

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLL 250
            V S +++            +   K    AF            KT L+   ++    ++ 
Sbjct: 169 TVKSALLNIKRKH----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSIS 224

Query: 251 HQAGIETNLRAENLSIEDFC 270
            + G+  N +   LS   + 
Sbjct: 225 EKFGLNLNAQIVCLSPSQWV 244


>gi|730032|sp|Q04720|ERMJ_BACAN RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|143198|gb|AAA22597.1| rRNA methyltransferase [Bacillus anthracis]
          Length = 287

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 112/259 (43%), Gaps = 20/259 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ + +  ++++I + +      TV+E+GAG G LT +L +  A KV+ +E D +F  I
Sbjct: 23  GQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTVL-SQKAGKVLAVENDSKFVDI 81

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L   ++QH N  +II  D +K+   K         +++N+PY I T ++   ++      
Sbjct: 82  LTRKTAQHSNT-KIIHQDIMKIHLPK-----EKFVVVSNIPYAITTPIMKMLLNNPA--S 133

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            ++   ++ +K   +R T++     Y    +         ++ +IS   F P PKV S +
Sbjct: 134 GFQKGIIVMEKGAAKRFTSKFIKNSYV---LAWRMWFDIGIVREISKEHFSPPPKVDSAM 190

Query: 206 IHFIPHLNPIPCCLE---SLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
           +      +  P   +   + + + + A  +    L   L+ +     +        +  E
Sbjct: 191 VRITRKKD-APLSHKHYIAFRGLAEYALKEPNIPLCVRLRGIFTPRQMKHLRKSLKINNE 249

Query: 263 ----NLSIEDFCRITNILT 277
                L+   +  I N +T
Sbjct: 250 KTVGTLTENQWAVIFNTMT 268


>gi|221140091|ref|ZP_03564584.1| rRNA methylase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|14021039|dbj|BAB47663.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|27529888|dbj|BAC53825.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|282167041|gb|ADA81057.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|302750710|gb|ADL64887.1| rRNA adenine N-6-methyltransferase, ErmA [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|302751482|gb|ADL65659.1| rRNA adenine N-6-methyltransferase, ErmA [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 243

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 24/253 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I   +       VIEIG+G G+ T+ L+ + +R VI IE D     + 
Sbjct: 10  QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVIAIEIDGGLCQVT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K+  +   N +++IQ D LK  F K  N     +I  N+PYNI T ++       T+   
Sbjct: 69  KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQ 119

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            +   L+ +K   +R+   +       L +L        M+  + P  F P P V S +I
Sbjct: 120 AKYSYLIVEKGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174

Query: 207 HFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN-L 264
               H   I     +  +           K + +  + L  +N   QA    N+   N L
Sbjct: 175 VLERHQPLISKKDYKKYRSFVY-------KWVNREYRVLFTKNQFRQALKHANVTNINKL 227

Query: 265 SIEDFCRITNILT 277
           S E F  I N   
Sbjct: 228 SKEQFLSIFNSYK 240


>gi|15923042|ref|NP_370576.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15924645|ref|NP_372179.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925755|ref|NP_373288.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315]
 gi|15926492|ref|NP_374025.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315]
 gi|15927234|ref|NP_374767.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|15927723|ref|NP_375256.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|15928177|ref|NP_375710.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|49482298|ref|YP_039522.1| rRNA adenine N-6-methyltransferase 1 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49483899|ref|YP_041123.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|57865851|ref|YP_190052.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis
           RP62A]
 gi|57867109|ref|YP_188794.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|57867248|ref|YP_188915.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|148266484|ref|YP_001245427.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|148268136|ref|YP_001247079.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392517|ref|YP_001315192.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150394203|ref|YP_001316878.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156978382|ref|YP_001440641.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|156979973|ref|YP_001442232.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663980|ref|ZP_05143452.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|255006441|ref|ZP_05145042.2| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257428438|ref|ZP_05604836.1| rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431607|ref|ZP_05607975.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257793731|ref|ZP_05642710.1| rRNA methylase Erm [Staphylococcus aureus A9781]
 gi|258422472|ref|ZP_05685383.1| rRNA methylase Erm(A) [Staphylococcus aureus A9719]
 gi|258447341|ref|ZP_05695487.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|258448318|ref|ZP_05696443.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A6224]
 gi|258451920|ref|ZP_05699937.1| rRNA methylase [Staphylococcus aureus A5948]
 gi|258454555|ref|ZP_05702521.1| rRNA methylase Erm(A) [Staphylococcus aureus A5937]
 gi|262053220|ref|ZP_06025373.1| rRNA methylase [Staphylococcus aureus 930918-3]
 gi|282929822|ref|ZP_06336965.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A10102]
 gi|293503531|ref|ZP_06667378.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|294617324|ref|ZP_06696964.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679]
 gi|295407727|ref|ZP_06817512.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8819]
 gi|295429344|ref|ZP_06821965.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297246800|ref|ZP_06930609.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8796]
 gi|304378949|ref|ZP_07361713.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|60389641|sp|Q6GKQ0|ERMA_STAAR RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|60392246|sp|P0A0H1|ERMA_STAAM RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|60392247|sp|P0A0H2|ERMA_STAAN RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|60392248|sp|P0A0H3|ERMA_STAAU RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|43731|emb|CAA26964.1| S-adenosyl-methionine dependent methylase [Staphylococcus aureus]
 gi|5360835|dbj|BAA82205.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|13699967|dbj|BAB41266.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315]
 gi|13700706|dbj|BAB42003.1| rRNA methylase [Staphylococcus aureus subsp. aureus N315]
 gi|13701452|dbj|BAB42746.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|13701943|dbj|BAB43235.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|13702548|dbj|BAB43689.1| rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315]
 gi|14245819|dbj|BAB56214.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|14247427|dbj|BAB57817.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|28465856|dbj|BAC57474.1| rRNA methylase [Staphylococcus aureus]
 gi|49240427|emb|CAG39078.1| rRNA adenine N-6-methyltransferase 1 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49242028|emb|CAG40727.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|57636509|gb|AAW53297.1| rRNA adenine N-6-methyltransferase [Staphylococcus epidermidis
           RP62A]
 gi|57637767|gb|AAW54555.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|57637906|gb|AAW54694.1| Tn554, rRNA adenine N-6-methyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|62815916|emb|CAH17569.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|70568192|dbj|BAE06289.1| rRNA methylase [Staphylococcus aureus]
 gi|147739553|gb|ABQ47851.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|147741205|gb|ABQ49503.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149944969|gb|ABR50905.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|149946655|gb|ABR52591.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156720517|dbj|BAF76934.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|156722108|dbj|BAF78525.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|195963189|emb|CAQ43014.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|221327661|gb|ACM17505.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|238773849|dbj|BAH66412.1| rRNA methylase [Staphylococcus aureus]
 gi|255914597|emb|CBA13539.1| adenine methylase [Staphylococcus rostri]
 gi|257275279|gb|EEV06766.1| rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277661|gb|EEV08345.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257787703|gb|EEV26043.1| rRNA methylase Erm [Staphylococcus aureus A9781]
 gi|257841538|gb|EEV65976.1| rRNA methylase Erm(A) [Staphylococcus aureus A9719]
 gi|257853867|gb|EEV76824.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|257858413|gb|EEV81291.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A6224]
 gi|257860403|gb|EEV83234.1| rRNA methylase [Staphylococcus aureus A5948]
 gi|257863282|gb|EEV86044.1| rRNA methylase Erm(A) [Staphylococcus aureus A5937]
 gi|259158881|gb|EEW43972.1| rRNA methylase [Staphylococcus aureus 930918-3]
 gi|269939564|emb|CBI47925.1| rRNA adenine N-6-methyltransferase ErmA1 [Staphylococcus aureus
           subsp. aureus TW20]
 gi|269941138|emb|CBI49525.1| rRNA adenine N-6-methyltransferase 2 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282589029|gb|EFB94134.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A10102]
 gi|285815777|gb|ADC36264.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus 04-02981]
 gi|285817338|gb|ADC37825.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus 04-02981]
 gi|291095197|gb|EFE25462.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291596433|gb|EFF27686.1| rRNA adenine N-6-methyltransferase [Enterococcus faecium E1679]
 gi|294967403|gb|EFG43447.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8819]
 gi|295126722|gb|EFG56367.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297176351|gb|EFH35626.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus A8796]
 gi|299758060|dbj|BAJ10035.1| 23S rRNA adenine N-6-methyltransferase [Staphylococcus aureus]
 gi|304342469|gb|EFM08344.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312828687|emb|CBX33529.1| rRNA adenine N-6-methyltransferase
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycinresistance protein)
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128354|gb|EFT84366.1| rRNA methylase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195559|gb|EFU25946.1| rRNA methylase [Staphylococcus aureus subsp. aureus CGS00]
 gi|329727340|gb|EGG63796.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus 21172]
 gi|224805|prf||1202257A gene ermA
          Length = 243

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 24/253 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I   +       VIEIG+G G+ T+ L+ + +R V  IE D     + 
Sbjct: 10  QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K+  +   N +++IQ D LK  F K  N     +I  N+PYNI T ++       T+   
Sbjct: 69  KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQ 119

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            +   L+ +K   +R+   +       L +L        M+  + P  F P P V S +I
Sbjct: 120 AKYSYLIVEKGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174

Query: 207 HFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN-L 264
               H   I     +  +           K + +  + L  +N   QA    N+   N L
Sbjct: 175 VLERHQPLISKKDYKKYRSFVY-------KWVNREYRVLFTKNQFRQALKHANVTNINKL 227

Query: 265 SIEDFCRITNILT 277
           S E F  I N   
Sbjct: 228 SKEQFLSIFNSYK 240


>gi|2317796|gb|AAC45552.1| rRNA N-6-methyltransferase [Staphylococcus chromogenes]
          Length = 244

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+ YNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIRYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|2407671|gb|AAC33146.1| rRNA N-6-methyltransferase [Staphylococcus simulans]
          Length = 244

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+ YNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIRYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|2764999|emb|CAA70208.1| adenine methylase [Staphylococcus hyicus]
          Length = 244

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 101/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKRNVDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  ++PYNI T ++   +    +  
Sbjct: 68  TENKLVNHDN-FQVLNKDILQFKFPK----NQSYKIFGSIPYNISTDIIRKVV----FES 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             +   L+ +    +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IADESYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISYKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNKSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|127196|sp|P10337|ERMF_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|150541|gb|AAA98217.1| macrolide-lincosamide-streptogramin B-resistance protein
           [Bacteroides fragilis]
 gi|154890|gb|AAA88675.1| macrolide-lincosamide-streptogramin-resistance protein [Bacteroides
           fragilis]
 gi|853782|emb|CAA60706.1| ermF [Bacteroides sp.]
 gi|1016682|gb|AAB39962.1| rRNA methyltransferase [Cloning vector pFD288]
          Length = 266

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 25/259 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D 
Sbjct: 7   PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+ + S   N ++++  D       KF     P ++++N+PY I + + F  +  
Sbjct: 66  ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           ++   F    +++ Q E  +++ ++     Y   +V         +++++ P  F P P 
Sbjct: 119 ESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPPT 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR--------RKT-LRQSLKRLGGENLLH 251
           V S +++            +   K    AF            KT L+   ++    ++  
Sbjct: 175 VKSALLNIKRKH----LFFDFKFKAKYLAFISYLLEKPDLSVKTALKSIFRKSQVRSISE 230

Query: 252 QAGIETNLRAENLSIEDFC 270
           + G+  N +   LS   + 
Sbjct: 231 KFGLNLNAQIVCLSPSQWL 249


>gi|7715978|gb|AAF68230.1|AF203972_3 ErmF [Shuttle vector pBA]
          Length = 266

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 25/259 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D 
Sbjct: 7   PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+ + S   N ++++  D       KF     P ++++N+PY I + + F  +  
Sbjct: 66  ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           ++   F    +++ Q E  +++ ++     Y   +V         +++++ P  F P P 
Sbjct: 119 ESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPPT 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR--------RKT-LRQSLKRLGGENLLH 251
           V S +++            +   K    AF            KT L+   ++    ++  
Sbjct: 175 VKSALLNIKRKH----LFFDFKFKAKYLAFISYLLEKPDLSVKTALKSIFRKSQVRSISE 230

Query: 252 QAGIETNLRAENLSIEDFC 270
           + G+  N +   LS   + 
Sbjct: 231 KFGLNLNAQIVCLSPSQWL 249


>gi|237713154|ref|ZP_04543635.1| ErmF [Bacteroides sp. D1]
 gi|237721691|ref|ZP_04552172.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_2_4]
 gi|262409455|ref|ZP_06085997.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22]
 gi|229446812|gb|EEO52603.1| ErmF [Bacteroides sp. D1]
 gi|229449487|gb|EEO55278.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_2_4]
 gi|262352667|gb|EEZ01765.1| dimethyladenosine transferase [Bacteroides sp. 2_1_22]
          Length = 266

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 109/258 (42%), Gaps = 25/258 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++K   + +      TV++IGAG G +T  LL     KV+ IE D 
Sbjct: 7   PVRFTGQHFTIDKVLIKDAIKQANITQQDTVLDIGAGKGFITVHLLK-NVNKVVAIENDL 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +  L    +   N ++++  D  K           P ++++N+PY I + + F  +  
Sbjct: 66  VLYKHLCKRFNNAQN-VQVVGCDFRKFTVPLL-----PFKVVSNIPYGITSDI-FRILMF 118

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D     +   +++ Q E  +++ +   S  Y   +V          +++ISP  F P P 
Sbjct: 119 DNVE-LFLGGSIVLQSEPAKKLVS---SKVYNPYTVFYHTFYDLEFLYEISPGSFLPPPT 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAF----GKR-----RKTLRQSLKRLGGENLLH 251
           V S ++      + I   L    K+   AF     ++     R  L+   ++    ++  
Sbjct: 175 VKSALLKIKRKQSSIDFEL----KVKYLAFISCLLQKPDLSVRTALKSIFRKSQVRSISE 230

Query: 252 QAGIETNLRAENLSIEDF 269
           + GI  N +   LS   +
Sbjct: 231 KFGINLNAQIVCLSPSQW 248


>gi|68304920|gb|AAY89931.1| predicted dimethyladenosine transferase NMA0902 [uncultured
           bacterium BAC13K9BAC]
          Length = 141

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
              +  + QKEV +RI ++ N   YGRLSV+T        +F+IS +VF P PKV S+ I
Sbjct: 7   IIDIHFMLQKEVVDRIISKPNIKVYGRLSVMTQAYFNTKKLFNISENVFTPKPKVKSSFI 66

Query: 207 HFIPHLNPIPCC--LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENL 264
             +P  +        E    I + AF  RRKT+RQSL +    +      I + LRAENL
Sbjct: 67  RLLPRKSIFKNSNHEEVFYNIVKSAFEGRRKTIRQSLSKYLSHDDYDNVNISSTLRAENL 126

Query: 265 SIEDFCRITNIL 276
           +++D+  I+  +
Sbjct: 127 TVDDYLLISKYV 138


>gi|196007440|ref|XP_002113586.1| hypothetical protein TRIADDRAFT_57156 [Trichoplax adhaerens]
 gi|190583990|gb|EDV24060.1| hypothetical protein TRIADDRAFT_57156 [Trichoplax adhaerens]
          Length = 330

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 107/298 (35%), Gaps = 39/298 (13%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
              I          L++     K+A+S G L    +IE   GPG LT+ LL  G  +++ 
Sbjct: 25  KRNIKASHRH----LINPQTADKVAKSFGDLHKYVIIEKDPGPGVLTKALLNAGCTQLVA 80

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI---------------- 119
           +E +Q+F  +LK++ +    RL+    D  K+D    +    P                 
Sbjct: 81  LESNQKFLSVLKELENDSDGRLKAYYSDINKLDLIPLYQGYIPPVYQSGDILGHIKPKSW 140

Query: 120 ------RIIANLPYNIGTRL----LFNWISADTWPPFWESLTLLFQKE-VGERITAQKNS 168
                 R+I      +G R     L   I       +     + +  E     + A   +
Sbjct: 141 DDDIVGRVIGVANNTMGHRFTISYLIRLIERSGLHRWGRWQHIAYYTEKTARALYAHVGT 200

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSP-KVTSTVIHFI-----PHLNPIPCCLESL 222
           P YGR++VL+      + +       FFP    +    +  I      H       L+ L
Sbjct: 201 PIYGRITVLSNILCNISTLSKDHIDEFFPRGMAIKGNSMELICLETKKHCELSDEALKFL 260

Query: 223 KKITQEAFGKRRKTLRQSLKRL--GGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             I Q+ F  RR+ L   L+ +  G   +L +  I     A N+S  DF  +    + 
Sbjct: 261 DPILQQVFAARRQPLLNRLESIAPGSYTVLEKLKIPPRKCASNMSPMDFVELAEAFSS 318


>gi|228470626|ref|ZP_04055482.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3]
 gi|288801882|ref|ZP_06407324.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica D18]
 gi|299143035|ref|ZP_07036156.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735]
 gi|319641873|ref|ZP_07996549.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A]
 gi|228307634|gb|EEK16613.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3]
 gi|288335924|gb|EFC74357.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica D18]
 gi|298575486|gb|EFI47371.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735]
 gi|317386505|gb|EFV67408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 266

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 25/259 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D 
Sbjct: 7   PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+ + S   N ++++  D       KF     P ++++N+PY I + + F  +  
Sbjct: 66  ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           ++   F    +++ Q E  +++ ++     Y   +V         +++++ P  F P P 
Sbjct: 119 ESLGNFL-GGSIILQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPPT 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLH 251
           V S +++            +   K    AF            KT L+   ++    ++  
Sbjct: 175 VKSALLNIKRKH----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISE 230

Query: 252 QAGIETNLRAENLSIEDFC 270
           + G+  N +   LS   + 
Sbjct: 231 KFGLNLNAQIVCLSPSQWL 249


>gi|255012163|ref|ZP_05284289.1| rRNA adenine N-6-methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313150007|ref|ZP_07812200.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|154893|gb|AAA27431.1| clindamycin resistance determinant (ermFS) [Bacteroides fragilis]
 gi|6979874|gb|AAF34636.1| ErmF [Shuttle vector pHS17]
 gi|313138774|gb|EFR56134.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 266

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 25/259 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D 
Sbjct: 7   PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+ + S   N ++++  D       KF     P ++++N+PY I + + F  +  
Sbjct: 66  ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           ++   F    +++ Q E  +++ ++     Y   +V         +++++ P  F P P 
Sbjct: 119 ESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPPT 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLH 251
           V S +++            +   K    AF            KT L+   ++    ++  
Sbjct: 175 VKSALLNIKRKH----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISE 230

Query: 252 QAGIETNLRAENLSIEDFC 270
           + G+  N +   LS   + 
Sbjct: 231 KFGLNLNAQIVCLSPSQWL 249


>gi|306834410|ref|ZP_07467525.1| rRNA adenine N-6-methyltransferase [Streptococcus bovis ATCC
           700338]
 gi|62467678|gb|AAX84025.1| erythromycin ribosome methylase [Streptococcus pasteurianus]
 gi|288856432|emb|CAY48681.1| 23S rRNA methylase [Staphylococcus aureus subsp. aureus ST398]
 gi|296777676|gb|ADH43093.1| erythromycin rRNA methylase protein [uncultured bacterium MID12]
 gi|304423439|gb|EFM26590.1| rRNA adenine N-6-methyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 244

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 99/257 (38%), Gaps = 30/257 (11%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + +I  +        +IEIG+G G+ T  L       V  IE D +   I
Sbjct: 9   SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFTFELAKRC-NYVTAIEIDPKLCRI 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            K+   ++ N  ++I  D L+  F K    +   +I  N+PYNI T ++   +   T   
Sbjct: 68  TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K +     +         L++        +++  I    F P P+V S++
Sbjct: 123 SYLIVEYGFAKRLLNTNRS---------LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173

Query: 206 IHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNLR 260
           I    H + I     +  +           K + +   +L  +N  +Q    A I+    
Sbjct: 174 IVLKRHPSKISLKDRKQYENFV-------MKWVNKEYIKLFSKNQFYQALKYARIDDL-- 224

Query: 261 AENLSIEDFCRITNILT 277
             N+S E F  + N   
Sbjct: 225 -NNISFEQFLSLFNSYK 240


>gi|113196900|gb|ABI31750.1| adenine-N6 methyltransferase [Streptococcus pneumoniae]
          Length = 219

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 21/235 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  I  D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIALDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
            +I    H   +P     L       F    K + +  ++L  +N  HQA     
Sbjct: 171 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 219


>gi|25052799|gb|AAN65178.1| putative methyl transferase [Neisseria gonorrhoeae]
          Length = 135

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 9/141 (6%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
              +K  GQNFL D  I+  I  +        VIEIG G   +T+ L      ++ V+E 
Sbjct: 4   HKARKRFGQNFLQDTRIIGDIVNAVRPQADDVVIEIGPGLAAITEPLAE-KVNRLHVVEI 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D+     LK +     ++L I + D L+ D   F NI     I+ NLPYNI T LLF   
Sbjct: 63  DRDIVCRLKTL--PFADKLVIHEGDVLQFD---FNNIEGKKEIVGNLPYNISTPLLFKL- 116

Query: 139 SADTWPPFWESLTLLFQKEVG 159
                      +  + QK V 
Sbjct: 117 --AVVADDVADMHFMLQKGVV 135


>gi|5123863|emb|CAA66307.2| 23S rRNA methyltransferase [Streptomyces fradiae]
          Length = 291

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 102/270 (37%), Gaps = 31/270 (11%)

Query: 21  PKKYMGQNFLLDLNILKKIAES---SGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVI 76
            ++  GQNF       ++ A     + S    +V +E+G G G +T+ L+  G   ++ +
Sbjct: 27  ARRVWGQNFFRSAGSARRFARQLTGAESAGNDSVTVEVGPGAGRITKELVRDG-HPIVAV 85

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D  +   L ++  + PN L ++ DD              P+R I NLP+  GTR+L  
Sbjct: 86  EVDPHWADRLAEL--ELPN-LTVVNDDFTTWPLPD-----GPLRFIGNLPFGTGTRMLRR 137

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMMFDISPHV 194
            ++    P        L QK+        K +  YG       W                
Sbjct: 138 CLALG--PDRCREGVFLLQKQYTR-----KRTGAYGGNLFNAQWEPWYTFRRGLGFPRQE 190

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLE----SLKKITQEAFGKRRKTL---RQSLKRLGGE 247
           F P P   S     +    P P        + ++  ++ F   R T+    ++L R  G 
Sbjct: 191 FAPVP--GSDTETLLVRSRPRPLAPWSRHAAYQRFVEDVFNTSRLTIGEAARALDRRAGP 248

Query: 248 NLLHQAGIETNLRAENLSIEDFCRITNILT 277
             L  A +   LR ++++ E +  + +  T
Sbjct: 249 GWLRGARVPPGLRVKDITAEQWADLFHACT 278


>gi|34328034|ref|NP_899170.1| rRNA methylase [Staphylococcus sciuri]
 gi|21953224|emb|CAC86410.1| adenine methylase [Staphylococcus sciuri]
 gi|33352204|emb|CAE18145.1| rRNA methylase [Staphylococcus sciuri]
          Length = 243

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 24/254 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+     + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKRNIDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +    I  N+PYNI T ++       T+  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYNIFGNIPYNISTDIVKRI----TFES 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             +   L+ +K   +R+   +       L +L        M+  + P  F P P V S +
Sbjct: 119 QAKYSYLIVEKGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVL 173

Query: 206 IHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN- 263
           I    H   I     +  +           K + +  + L  +N   QA    N+   N 
Sbjct: 174 IVLERHQPLISKKDYKKYRSFVY-------KWVNREYRVLFTKNQFRQALKHANVTNINK 226

Query: 264 LSIEDFCRITNILT 277
           LS E F  I N   
Sbjct: 227 LSKEQFLSIFNSYK 240


>gi|313141396|ref|ZP_07803589.1| dimethyladenosine transferase dimethyltransferase [Helicobacter
           canadensis MIT 98-5491]
 gi|313130427|gb|EFR48044.1| dimethyladenosine transferase dimethyltransferase [Helicobacter
           canadensis MIT 98-5491]
          Length = 152

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 8/156 (5%)

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +PY I T L+   I      P  +   ++ QKEV  +  A +N   +  LSVL     +A
Sbjct: 1   MPYYIATLLVIKAIKD----PLCKGCVVMTQKEVALKFCAIQNQSDFSALSVLAQSVGEA 56

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL 244
            M+F++ P  F P PKVTS V     +  P    L  L+++ + AF   RKTL  +L ++
Sbjct: 57  KMLFEVPPSAFVPQPKVTSAVFLIEKNHIPSSDFLVKLEELLKIAFSAPRKTLFNNLSKV 116

Query: 245 GGENL----LHQAGIETNLRAENLSIEDFCRITNIL 276
             +      L   GI +N R   +   D+ R+  +L
Sbjct: 117 YSKEKIMETLETLGIVSNKRPHEIDTTDYHRLLKLL 152


>gi|168705823|ref|ZP_02738100.1| dimethyladenosine transferase [Gemmata obscuriglobus UQM 2246]
          Length = 165

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 13/167 (7%)

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           +++ANLPY I T L+ N +      P  E + ++ Q E+ ER+ A  N+  Y  LSVL  
Sbjct: 1   KLVANLPYVIATPLISNLLIGH---PEIERMVVMVQWEIAERMKAVPNTKDYNALSVLVQ 57

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTL 237
                  +  ++P  F P PKV S ++   P+         +   +   ++ +  RRK L
Sbjct: 58  SVADVETVRKVAPTNFHPRPKVDSAIVLIKPNAEKRAKVGDVMKFRIFLRDLYVHRRKNL 117

Query: 238 RQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           RQ+L             +  L + GI+  LR+E L IE   R+  + 
Sbjct: 118 RQALVGWPTGPREKKDVDAKLAELGIDGTLRSEALDIEQHLRLAAVF 164


>gi|2326854|emb|CAA70206.1| adenine methylase [Staphylococcus hominis]
          Length = 244

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 100/256 (39%), Gaps = 28/256 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            Q F+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQKFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGDFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            +     H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TEKKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++        +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRA 261
           I      + I    +         F    K + +  K++  +N     L  AGI+     
Sbjct: 174 IRLNRKKSRISHKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNNSLKHAGIDDL--- 224

Query: 262 ENLSIEDFCRITNILT 277
            N+S E F  + N   
Sbjct: 225 NNISFEQFLSLFNSYK 240


>gi|261405179|ref|YP_003241420.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261281642|gb|ACX63613.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. Y412MC10]
          Length = 290

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 12/189 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+ L+   ++  + + +      TV++IGAG G LT  L    A  V+ IE D  F   L
Sbjct: 21  QHLLISKRLIHDMIDLARIRSTDTVLDIGAGTGALTLPLAE-KAGHVLAIETDPAFVDKL 79

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
                   N + + Q D L++   +     +P  ++AN+PY+I T ++   +     P  
Sbjct: 80  LGKMKDSSN-IRVKQSDFLEIPLPR-----NPFAVVANIPYSITTPIMGKLLECPGLP-- 131

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            +   LL +    +R TA         LS    +     ++  +SP  F P P+V S ++
Sbjct: 132 LQRAVLLVEMGAAKRFTAVPIQDPR-ILSWRMQY--DIRLVRTVSPRHFAPPPQVDSAIL 188

Query: 207 HFIPHLNPI 215
                  P+
Sbjct: 189 TIHRRKKPL 197


>gi|164687690|ref|ZP_02211718.1| hypothetical protein CLOBAR_01332 [Clostridium bartlettii DSM
           16795]
 gi|457208|gb|AAC36915.1| 23S rRNA methlyase [Clostridium perfringens]
 gi|164603464|gb|EDQ96929.1| hypothetical protein CLOBAR_01332 [Clostridium bartlettii DSM
           16795]
 gi|1092864|prf||2102192A 23S rRNA methylase
          Length = 257

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 103/256 (40%), Gaps = 22/256 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            + QNF+   N + K+ + +       VIEIG G G++T+ L    +  V  IE D+  +
Sbjct: 15  SVSQNFITSKNTIYKLIKKTNISKNDFVIEIGPGKGHITEALCE-KSYWVTAIELDRSLY 73

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L +      N + +I  D L     K        ++ +N+P+ I T+++   +  +  
Sbjct: 74  GNLINKFKSK-NNVTLINKDFLNWKLPK----KREYKVFSNIPFYITTKIIKKLLLEELN 128

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P    + L+ +K   +R           +LS+L   +    ++   +   F P P V  
Sbjct: 129 SP--TDMWLVMEKGSAKRFMGIPRE---SKLSLLLKTKFDIKIVHYFNREDFHPMPSVDC 183

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNL 259
            +++F           +   + T  +F  +      +L+ +  +N +H      GI  N 
Sbjct: 184 VLVYF-KRKYKYDISKDEWNEYT--SFISKS---INNLRDVFTKNQIHAVIKYLGINLNN 237

Query: 260 RAENLSIEDFCRITNI 275
            +E +S  D+ ++   
Sbjct: 238 ISE-VSYNDWIQLFRY 252


>gi|26347035|dbj|BAC37166.1| unnamed protein product [Mus musculus]
          Length = 160

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 7/131 (5%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           +FQ+E   R+ A+     Y RLS+ T    +   +  +  + F P PKV S+V+   P  
Sbjct: 1   MFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKN 60

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIE 267
            P P   +    + +  F ++ KTL  + K    + LL +       ++  +  E+ SI 
Sbjct: 61  PPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVQNTVIPEDFSIA 120

Query: 268 DFCRITNILTD 278
           D  +I  ILT 
Sbjct: 121 D--KIQQILTS 129


>gi|34394642|dbj|BAC83949.1| Ribosomal RNA adenine dimethylase-like protein [Oryza sativa
           Japonica Group]
          Length = 261

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 9/150 (6%)

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            ++L +I+ DA++ +F +F         +AN+PY I + L+   +     P  + + TLL
Sbjct: 15  AHKLTVIRADAVEAEFPEF------DVCVANIPYGISSPLIAKLLFG---PYRFRAATLL 65

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213
            QKE   R+ A      Y RL+        A ++ D+S   F P PKV S+++   P   
Sbjct: 66  LQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFVPMPKVDSSLVEIRPRAA 125

Query: 214 PIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
                L      T+  FG++ KTL    K+
Sbjct: 126 EPNVDLAEWLAFTRSCFGQKNKTLGAIFKQ 155


>gi|291402058|ref|XP_002717677.1| PREDICTED: transcription factor B2, mitochondrial [Oryctolagus
           cuniculus]
          Length = 397

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 122/324 (37%), Gaps = 59/324 (18%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  +++ PK+Y+    L +  +  +I   S        +E   GPG LTQ LL  GA KV
Sbjct: 61  VCKHRLDPKRYVSSRGLAETLV--QILRGSQKDPRSLFLECNPGPGVLTQALLETGA-KV 117

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--- 130
           + +E D+ F P L+ + +    +LE++  D  K+D  K   +  PI I   L  N+G   
Sbjct: 118 VALESDRNFIPRLESLGNNLDGKLEVVYCDFFKLDPRKCGLVRPPIMISHVLFQNLGIKA 177

Query: 131 ------------------------TRLLFNWISADTWPPFWESLTLLF--QKEVGERITA 164
                                    +LL++  S  +          +F  +KE  + +  
Sbjct: 178 LPWSAGIPLKIIGIFPIKNERKALWKLLYDLYSCTSIYRHGRVELNMFISEKEYQKLMAN 237

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFF---------PSPKVTSTV---------I 206
            KN   Y  LSVL     +   +  + P   F           PK   ++         I
Sbjct: 238 PKNPNLYQVLSVLWQVACEIK-VLHVEPWSSFDVYTQNGKLKKPKHKDSLERMQQNLYFI 296

Query: 207 HFIPHLNPI-----PCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETN 258
              P  N       P   +    + +  FGKR  +L    +SL  +   ++L Q      
Sbjct: 297 RMTPRRNLFTENLTPINYDVFFHMVKHCFGKRNASLIEHLRSLSPVDAMDILMQTRKNEK 356

Query: 259 LRAENLSIEDFCRITNILTDNQDI 282
           ++  ++  +DF R+   +  ++D 
Sbjct: 357 VKITDMYPQDFKRLFETIECSKDY 380


>gi|15072727|emb|CAC47934.1| rRNA adenine-N6 methyltransferase [Bacteroides thetaiotaomicron]
          Length = 266

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 108/255 (42%), Gaps = 17/255 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D 
Sbjct: 7   PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+ + S   N ++++  D       KF     P ++++N+PY I + + F  +  
Sbjct: 66  ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           +    F    +++ Q E  +++ ++     Y   +V         +++++ P  F P P 
Sbjct: 119 ENLENFL-GGSIVLQFEPTQKLFSR---KLYNPYTVFCHTFFDLKLVYEVGPESFLPPPT 174

Query: 201 VTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKR---RKT-LRQSLKRLGGENLLHQAGI 255
           V S +++           +++           K     KT L+   ++     +  + G+
Sbjct: 175 VKSALLNIKRKHLFFDFKIKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRTISEKFGL 234

Query: 256 ETNLRAENLSIEDFC 270
             N +   LS   + 
Sbjct: 235 NLNAQIVCLSPSQWL 249


>gi|118575664|ref|YP_875407.1| dimethyladenosine transferase (rRNA methylation) [Cenarchaeum
           symbiosum A]
 gi|118194185|gb|ABK77103.1| dimethyladenosine transferase (rRNA methylation) [Cenarchaeum
           symbiosum A]
          Length = 221

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 22/219 (10%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +      ++IA+S+G   G TV+E+G G G LT+ L   GAR +I +E++ + +   +  
Sbjct: 1   MRSRQAARRIADSAGISPGDTVLEVGTGLGALTRELCGRGAR-IISVERNGRLYG--EAS 57

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           +S H   LE+ + D        F         ++NLPY+   R +   +  D     +  
Sbjct: 58  ASLHCEGLELRRGD-------GFAVEDGFDVFVSNLPYSQSRRAVEWLVQRD-----FAR 105

Query: 150 LTLLFQKEV-GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
             +  QKE   + + A         + VL G   +  ++F ++   F P P+V S V+  
Sbjct: 106 GIVTVQKEFAAKLMEADPR--RRRAIGVLAGHCFEMRVLFPVARSCFDPPPRVDSVVVEL 163

Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
                     + ++  I    F  RRKT+R  +K+ G E
Sbjct: 164 AKRRTIPGGVVRAVNGI----FSYRRKTMRGIMKQFGRE 198


>gi|329930026|ref|ZP_08283651.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. HGF5]
 gi|328935425|gb|EGG31897.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus sp. HGF5]
          Length = 288

 Score =  122 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 97/244 (39%), Gaps = 17/244 (6%)

Query: 15  SHYKIIPKK--YMG-QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
             ++   KK      Q+ L+   ++  + + +      TV++IGAG G LT  L    A 
Sbjct: 6   KKHREKLKKPSNFSAQHLLISKRLIHDMIDLAQIRSTDTVLDIGAGTGALTLPLAE-KAG 64

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            V+ IE D  F   L        N + + Q D L++   +     +P  ++AN+PY+I T
Sbjct: 65  HVLAIETDPAFVDKLLGKMKDSSN-IRVKQSDFLEIPLPR-----NPFAVVANIPYSITT 118

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS 191
            ++   +     P   +   LL +    +R TA         LS    +     ++  +S
Sbjct: 119 PIMGKLLECPGLP--LQRAALLVEMGASKRFTAVPIQDPR-ILSWRMQY--DIRLVRTVS 173

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR--RKTLRQSLKRLGGENL 249
           PH F P P+V S ++       P+       K     A+G R  R  L  +L  +     
Sbjct: 174 PHHFAPPPQVDSAILTIHRRKKPLIAASSQPKFTALAAYGLRDARLPLFAALSGVFTPPQ 233

Query: 250 LHQA 253
           + + 
Sbjct: 234 MAKL 237


>gi|167044871|gb|ABZ09538.1| putative ribosomal RNA adenine dimethylase [uncultured marine
           crenarchaeote HF4000_APKG8D22]
          Length = 217

 Score =  122 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 28/241 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            K I  ++       V+EIG G G L   L    A++V  IEKDQ      K     + N
Sbjct: 2   AKSIVSNANITRNDFVLEIGTGYGILIPYLCK-NAKQVFSIEKDQNLHLSAKSNFHDYTN 60

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            L +   D    D             ++NLPY+  +R    W+        +    ++ Q
Sbjct: 61  -LVLEYGDGFNSDHNF-------SVFVSNLPYS-KSRFAIEWLLQKK----FSRAVIMVQ 107

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           KE  E++++ +       +SVL  +  +   + ++    FFP PKV S VI         
Sbjct: 108 KEFSEKLSSNEKHM---AISVLANYGFRIKFLMNVKKSNFFPMPKVDSVVILLEQKR--- 161

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
               + L    +  F  RRKTL+  LK+ G           +  R + LS ++  +I   
Sbjct: 162 -IISKVLISTVKRIFSYRRKTLQNILKQFG-------LNSTSKKRLDELSGDEIIKIAQK 213

Query: 276 L 276
           +
Sbjct: 214 I 214


>gi|730033|sp|Q00014|ERMG_LACRE RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|148728|gb|AAA98096.1| methylase [Plasmid pGT633]
          Length = 244

 Score =  122 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 99/257 (38%), Gaps = 30/257 (11%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + +I  +        +IEIG+G G+ +  L       V  IE D +   I
Sbjct: 9   SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFSFELAKRC-NYVTAIEIDPKLCRI 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            K+   ++ N  ++I  D L+  F K    +   +I  N+PYNI T ++   +   T   
Sbjct: 68  TKNKLIEYEN-FQVINKDILQFKFPK----NKSYKIFGNIPYNISTDIIRKIVFESTATE 122

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K +     +         L++        +++  I    F P P+V S++
Sbjct: 123 SYLIVEYGFAKRLLNTNRS---------LALFLMTEVDISILSKIPREYFHPKPRVNSSL 173

Query: 206 IHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNLR 260
           I    H + I     +  +           K + +   +L  +N  +Q    A I+    
Sbjct: 174 IVLKRHPSKISLKDRKQYENFV-------MKWVNKEYIKLFSKNQFYQALKYARIDDL-- 224

Query: 261 AENLSIEDFCRITNILT 277
             N+S E F  + N   
Sbjct: 225 -NNISFEQFLSLFNSYK 240


>gi|299148760|ref|ZP_07041822.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23]
 gi|301311645|ref|ZP_07217571.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3]
 gi|313886992|ref|ZP_07820692.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|298513521|gb|EFI37408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23]
 gi|300830386|gb|EFK61030.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3]
 gi|312923518|gb|EFR34327.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 266

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 108/255 (42%), Gaps = 17/255 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D 
Sbjct: 7   PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+ + S   N ++++  D       KF     P ++++N+PY I + + F  +  
Sbjct: 66  ALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMF 118

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           +    F    +++ Q E  +++ ++     Y   +V         +++++ P  F P P 
Sbjct: 119 ENLENFL-GGSIVLQFEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPPPT 174

Query: 201 VTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKR---RKT-LRQSLKRLGGENLLHQAGI 255
           V S +++           +++           K     KT L+   ++     +  + G+
Sbjct: 175 VKSALLNIKRKHLFFDFKIKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRTISEKFGL 234

Query: 256 ETNLRAENLSIEDFC 270
             N +   LS   + 
Sbjct: 235 NLNAQIVCLSPSQWL 249


>gi|295673178|ref|XP_002797135.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb01]
 gi|226282507|gb|EEH38073.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb01]
          Length = 309

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 11/145 (7%)

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I + L F  ++ +  P       L+FQ+E   R+ A+     Y RLSV      +   +
Sbjct: 62  DISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYNRLSVNAQMWARIDHI 118

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
             +  + F P P V S+V+  +P         +    + + AF ++ KT+R S   LG  
Sbjct: 119 MKVGKNNFKPPPAVESSVVRIVPKNPRPQISYDEWDGLLRIAFVRKNKTIRSSF--LGTT 176

Query: 248 NLLHQAGIETNLRA----ENLSIED 268
           ++L    +E+N R      N+ +ED
Sbjct: 177 SVLD--MLESNYRTWCAQNNIPVED 199


>gi|416234|dbj|BAA03626.1| kasugamycin dimethyltransferase [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 204

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 14/205 (6%)

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFNWIS 139
              ILK   +   + LEIIQ D L++D ++  +      I II+N PY I + +LF  + 
Sbjct: 1   MVEILKTKFNH--SNLEIIQADVLEIDLKQLISKYDYKNISIISNTPYYITSEILFKTL- 57

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                        + QKEV  RI + KN  +Y  LS+   + ++    F ++  +F+P P
Sbjct: 58  --QISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPIP 115

Query: 200 KVTSTVIHFIPHL--NPIPCCLESLKKITQEAFGKRRKT-----LRQSLKRLGGENLLHQ 252
           KV S +I    +          +   +  +  F  +RKT           +      L  
Sbjct: 116 KVDSAIISLTFNNIYKKQINDDKKFIEFVRTLFNNKRKTILNNLNNIIQNKNKALEYLKM 175

Query: 253 AGIETNLRAENLSIEDFCRITNILT 277
             I +NLR E L I+++ ++ N++ 
Sbjct: 176 LNISSNLRPEQLDIDEYIKLFNLIY 200


>gi|400267|sp|Q02607|ERMU_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName:
           Full=Erythromycin resistance protein; AltName:
           Full=Macrolide-lincosamide-streptogramin B resistance
           protein
 gi|143943|gb|AAA63165.1| methyltransferase [Bacteroides fragilis]
          Length = 266

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 108/259 (41%), Gaps = 22/259 (8%)

Query: 22  KKYM-----GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           KK +     GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ I
Sbjct: 3   KKKLPLRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAI 61

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           E D      L+ + S   N ++++  D       KF     P ++++N+PY I + + F 
Sbjct: 62  ENDTALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FK 114

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +  +    F    +++ Q E  +++ ++     Y   +V         +++++ P  F 
Sbjct: 115 ILMFENLENFL-GGSIVLQFEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFL 170

Query: 197 PSPKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKR---RKT-LRQSLKRLGGENLLH 251
           P P V S +++           +++           K     KT L+   ++     +  
Sbjct: 171 PPPTVKSALLNIKRKHLFFDFKIKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRTISE 230

Query: 252 QAGIETNLRAENLSIEDFC 270
           + G+  N +   LS   + 
Sbjct: 231 KFGLNLNAQIVCLSPSQWL 249


>gi|170780459|ref|YP_001716198.1| hypothetical protein pRW35_1 [Streptococcus pyogenes]
 gi|158523369|gb|ABW70817.1| ermT [Streptococcus pyogenes]
          Length = 242

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 97/257 (37%), Gaps = 32/257 (12%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + +I  +        +IEIG+G G+ T  L       V  IE D +   I
Sbjct: 9   SQNFITSKHHINEILRNVHLNTNDNIIEIGSGKGHFTFELAKRC-NYVTAIEIDPKLCRI 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            K+   +     ++I  D L+  F K    +   +I  N+PYNI T ++   +   T   
Sbjct: 68  TKNKLIE---NFQVINKDILQFKFPK----NKSYKIYGNIPYNISTDIIRKIVFESTATE 120

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            +  +   F K +     +         L++        +++  I    F P P+V S++
Sbjct: 121 SYLIVEYGFAKRLLNTNRS---------LALFLMTEVDISILSKIPREYFHPKPRVNSSL 171

Query: 206 IHFIPHLNPIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNLR 260
           I    H + I     +  +           K + +   +L  +N  +Q    A I+    
Sbjct: 172 IVLKRHPSKISLKDRKQYENFV-------MKWVNKEYIKLFSKNQFYQALKYARIDDL-- 222

Query: 261 AENLSIEDFCRITNILT 277
             N+S E F  + N   
Sbjct: 223 -NNISFEQFLSLFNSYK 238


>gi|226292329|gb|EEH47749.1| dimethyladenosine transferase [Paracoccidioides brasiliensis Pb18]
          Length = 310

 Score =  121 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 11/145 (7%)

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           +I + L F  ++ +  P       L+FQ+E   R+ A+     Y RLSV      +   +
Sbjct: 62  DISSPLTFKLLATNPAP---RVCILMFQREFAMRLFAKPGDKLYNRLSVNAQMWARIDHI 118

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
             +  + F P P V S+V+  +P         +    + + AF ++ KT+R S   LG  
Sbjct: 119 MKVGKNNFKPPPAVESSVVRIVPKNPRPQISYDEWDGLLRIAFVRKNKTIRSSF--LGTT 176

Query: 248 NLLHQAGIETNLRA----ENLSIED 268
           ++L    +E+N R      N+ +ED
Sbjct: 177 SVLD--MLESNYRTWCAQNNIPVED 199


>gi|325104371|ref|YP_004274025.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM
           12145]
 gi|324973219|gb|ADY52203.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM
           12145]
          Length = 270

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 111/257 (43%), Gaps = 19/257 (7%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++      +    G  V++IGAG G LT  L+   +  VI IE D 
Sbjct: 7   PVRFTGQHFTIDTILINDAIRLAEIQKGDVVLDIGAGSGFLTVHLVKH-STNVIAIENDN 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    L+     + N + II      +D+ KF       ++++N+P+ + + +L + +  
Sbjct: 66  RLVSELRSKFRVNKN-VTIIG-----LDYRKFSVPQKNFKVVSNIPFALTSEILKSLMYT 119

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           +    F++   L+ Q E  +++  +    ++   +V      +   +++I+P  F P P 
Sbjct: 120 N--IEFFKQGCLIMQFESAKKLVRK---KYFNPYTVFYHTFFEVRFIYEINPESFMPPPT 174

Query: 201 VTSTVIHFIPHLNPIPCCLESLKK-ITQEAFGKR-----RKT-LRQSLKRLGGENLLHQA 253
           V S ++             E  +K ++   F  R      KT L++  ++     L    
Sbjct: 175 VKSALVKIGKKKCTDNIGAEMKEKYLSFLHFMMRFPDLPSKTVLKKLFRKQQVRELAESY 234

Query: 254 GIETNLRAENLSIEDFC 270
           G+  +    ++S E F 
Sbjct: 235 GLVLDKPVFSMSAEQFL 251


>gi|212694246|ref|ZP_03302374.1| hypothetical protein BACDOR_03772 [Bacteroides dorei DSM 17855]
 gi|212662747|gb|EEB23321.1| hypothetical protein BACDOR_03772 [Bacteroides dorei DSM 17855]
          Length = 218

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 22/234 (9%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             +   + EIGAG G+ T  L+      V  IE D +   + ++    +PN  +I+ DD 
Sbjct: 2   LDEKDNIFEIGAGKGHFTAELVKRC-NFVTAIEIDSKLCEVTRNKLLNYPN-YQIVNDDI 59

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           LK      F   +P +I  N+PYNI T ++   +   +    +          + E   A
Sbjct: 60  LKFT----FPSHNPYKIFGNIPYNISTNIIRKIVFESSATISYL---------IVEYGFA 106

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224
           +        L++L       +++  I  + F P PKV S +I       P     +  KK
Sbjct: 107 KSLLDTNRSLALLLMAEVDISILAKIPRYYFHPKPKVDSALIVL--KRKPAKMAFKERKK 164

Query: 225 ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENLSIEDFCRITNILT 277
              E F    K + +  ++L  +N  ++A     +    N+S E F  + N   
Sbjct: 165 --YETFVM--KWVNKEYEKLFTKNQFNKALKYARIYDINNISFEQFVSLFNSYK 214


>gi|207340778|gb|EDZ69021.1| YPL266Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 204

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
            I+N PY I + L+F  I+    P       L+FQ+E   R+ A+     Y RLS     
Sbjct: 11  CISNTPYQISSPLVFKLINQPRPP---RVSILMFQREFALRLLARPGDSLYCRLSANVQM 67

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
               T +  +  + F P P+V S+V+                  + +  F ++ +T+   
Sbjct: 68  WANVTHIMKVGKNNFRPPPQVESSVVRLEIKNPRPQVDYNEWDGLLRIVFVRKNRTISAG 127

Query: 241 LKRLGGENLLHQ 252
            K     ++L +
Sbjct: 128 FKSTTVMDILEK 139


>gi|15811125|gb|AAL08808.1|AF308662_1 hypothetical dimethyl adenosine transferase [Ehrlichia ruminantium]
          Length = 124

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y I PKK + Q F+   +I  KI   +G++   ++IEIG G G +T  +L    +K+I I
Sbjct: 5   YMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLISI 64

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           EKD +  PI   I  +   + E I  DAL +D         P+++IANLPY+I T LL  
Sbjct: 65  EKDSRLLPIHDKIIKEFQGKYEFILSDALDIDLRNIA--KPPVKVIANLPYSIATLLLIK 122

Query: 137 WI 138
           WI
Sbjct: 123 WI 124


>gi|315645554|ref|ZP_07898678.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus vortex V453]
 gi|315279032|gb|EFU42342.1| rRNA (adenine-N(6)-)-methyltransferase [Paenibacillus vortex V453]
          Length = 287

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 23/218 (10%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   NK+H  +  L      P     QN ++   ++  + + +      TV++IGAG G 
Sbjct: 1   MFKKNKNH--RDPLKTSSNFP----SQNMIISKRLIHDMIDLARIHPHETVLDIGAGAGA 54

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT  L    A KV+ IE D      L D   +  N +E+ Q D L+         S P  
Sbjct: 55  LTFPLAEKAA-KVLAIEIDSVLIHKLLDKMGERGN-IEVKQCDFLETSLP-----SKPFV 107

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++AN+PY+I T +    +      P   ++       + E+  A+  + H  R   +  W
Sbjct: 108 VVANIPYSITTPIFGKLL--HPAVPMQRAVI------LVEKGAAKGFTSHSIRNPRILNW 159

Query: 181 R--TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
           R   +  ++  +SP  F P PKV S ++       P+ 
Sbjct: 160 RMQYEIRLVRTVSPDHFAPPPKVDSAILSIRRREQPLV 197


>gi|322779454|gb|EFZ09646.1| hypothetical protein SINV_04081 [Solenopsis invicta]
          Length = 148

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 28/148 (18%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           +FQ+E  ER+ A+     Y RLS+ T    +  M+  +  + F P PKV S V+   P  
Sbjct: 1   MFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESNVVRIEPRN 60

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----------------GI- 255
            P P   +    +T+ AF ++ KTL  + K+     +L +                  I 
Sbjct: 61  PPPPINYQEWDSLTRIAFMRKNKTLSAAFKQTTVVTMLEKNYKIHCSLNNKIVPNNFDIK 120

Query: 256 -----------ETNLRAENLSIEDFCRI 272
                        N RA  +  +DF R+
Sbjct: 121 HLINHVLEKADSKNKRARTMDTDDFIRL 148


>gi|23098376|ref|NP_691842.1| erythromycin resistance protein [Oceanobacillus iheyensis HTE831]
 gi|22776602|dbj|BAC12877.1| erythromycin resistance protein [Oceanobacillus iheyensis HTE831]
          Length = 244

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 26/254 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I + +       VIEIG+G G+ T+ L+ + +R V  IE D+    + 
Sbjct: 10  QNFITSKKHVKEILDHTSINKQDNVIEIGSGKGHFTKELVKM-SRWVHSIEIDEDLCQVT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           +       N +++I  D LK +    F+ +   +I  N+P+NI T ++    S       
Sbjct: 69  QKAVKPFQN-IKVIHTDILKFN----FHKNKDYKIFGNIPFNISTDIVKKIASESQSKFS 123

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
           +          + E+  A++       L +L        ++  +    F P P V S +I
Sbjct: 124 YL---------IVEKGFAKRLQNTKRALGLLLMVEMDIKILTKVPRTYFHPRPSVDSVLI 174

Query: 207 HFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRA--EN 263
               H   I     +  +           + + +    L  +N   QA     + A   N
Sbjct: 175 VLERHEPLILKKDYKKYQSFVY-------RWVNKEYHALFTKNQFRQALRHAKI-ADLNN 226

Query: 264 LSIEDFCRITNILT 277
           ++ + F  + N   
Sbjct: 227 VNFKQFLSLFNSYK 240


>gi|164604805|gb|ABY61963.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 229

 Score =  118 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 26/243 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +  
Sbjct: 1   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLN 58

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
            R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F
Sbjct: 59  TRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGF 114

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
            K   +          +  L +L   +     +  +    F P PKV S +I    H   
Sbjct: 115 YKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTD 165

Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCR 271
           +P     L       F    K + +  ++L  +N  HQA         NLS    E    
Sbjct: 166 VPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTITYEQVLS 217

Query: 272 ITN 274
           I N
Sbjct: 218 IFN 220


>gi|256825598|ref|YP_003149558.1| dimethyladenosine transferase (rRNA methylation) [Kytococcus
           sedentarius DSM 20547]
 gi|256688991|gb|ACV06793.1| dimethyladenosine transferase (rRNA methylation) [Kytococcus
           sedentarius DSM 20547]
          Length = 244

 Score =  118 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 22/232 (9%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
              +IEIG G G LT  L  LG R V  +E D +    L +    H   +E++ DD L  
Sbjct: 5   DGPIIEIGPGDGALTSPLAQLG-RPVTAVEIDTRLAQRLAERLGPH---VEVVADDFLAY 60

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
                 ++     ++ NLP++  T +L   +      P W    +L Q EV  R      
Sbjct: 61  RLPTSAHV-----LVGNLPFHQTTAMLRQIL----HSPAWTDAIVLVQWEVARRRAGVGG 111

Query: 168 SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKI 225
           +     ++         T+   +    F P P V   ++      +P+  P        +
Sbjct: 112 ATM---MTAQWAPWFDFTLHSRVPARAFTPRPGVDGGILAIHRREHPLLSPARRRQFHAL 168

Query: 226 TQEAFGKRRKTLRQSLKRL----GGENLLHQAGIETNLRAENLSIEDFCRIT 273
               +    + L Q L R       +  L + G+ T    +++ +E +  + 
Sbjct: 169 VHRVYTGPGRGLAQILARTTALGSPQAWLTRHGMNTADLPKDMPVEVWVDLF 220


>gi|313228792|emb|CBY17943.1| unnamed protein product [Oikopleura dioica]
          Length = 193

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            GQ+ L +  +++ + E +G L   T++EIG G GN+T  LL    +KVI +E D++   
Sbjct: 37  YGQHILKNPQVVQSMVEKAGVLPSDTILEIGPGTGNMTVKLLE-KCKKVIALEVDERMVA 95

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            ++      P  ++L II  DALK +   FF++     ++ANLPY I + + F  +    
Sbjct: 96  EVQKRVMGTPLKHKLTIINKDALKAELP-FFDL-----VVANLPYAISSPITFKLLLHR- 148

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
            P F  ++ +   +E  E  +    S     +S++  +
Sbjct: 149 -PMFRVAVLMGVYEERRELASQGPLSRDLIAISIIACY 185


>gi|322801725|gb|EFZ22327.1| hypothetical protein SINV_09620 [Solenopsis invicta]
          Length = 155

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 12/147 (8%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++   I+  K  GQ+ L +  +++ + E +       V+EIG G GN+T  +L   A+KV
Sbjct: 16  VARQGILFNKDKGQHILKNPLVIQTMVEKAALRATDVVLEIGPGTGNMTVKMLD-KAKKV 74

Query: 74  IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I  E D +    L+       + ++L+I+  D LK D   FF++      +AN+PY I +
Sbjct: 75  IACEIDPRMVAELQKRVQGTVYQSKLQIVLGDVLKSDLP-FFDLC-----VANIPYQISS 128

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEV 158
            L+F  +S     P +      ++ E 
Sbjct: 129 PLVFKLLSHR---PLFSLQLSSYKMET 152


>gi|195506441|ref|XP_002087207.1| GE14674 [Drosophila yakuba]
 gi|194186922|gb|EDX00506.1| GE14674 [Drosophila yakuba]
          Length = 160

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 9/139 (6%)

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
           +TL FQKEV +RI A        RLSV++   T+  M F I    F P P+V   V+  I
Sbjct: 1   MTLTFQKEVADRICAPVGGEQRCRLSVMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLI 60

Query: 210 PHLNP-IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN--------LLHQAGIETNLR 260
           P   P        ++++ +  F  R+K  R+    L            L  +A ++  LR
Sbjct: 61  PLKRPKTQLPFPLVERVVRHIFSMRQKYCRRGFGTLLPPEDREDVTQKLFQRAEVQDTLR 120

Query: 261 AENLSIEDFCRITNILTDN 279
           +  L++E   R+  + +++
Sbjct: 121 SFELTVEQCLRLAEVYSEH 139


>gi|159161813|gb|ABW95899.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + ++ V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKHVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             +R+ +I  D L+      F      +I+ N+PYN+ T+++   +        +  +  
Sbjct: 59  LNSRVTLIHQDILQFQ----FPNKQRYKIVGNIPYNLSTKIIKKVVFESHASDIYLVVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|146302849|ref|YP_001190165.1| dimethyladenosine transferase [Metallosphaera sedula DSM 5348]
 gi|145701099|gb|ABP94241.1| dimethyladenosine transferase [Metallosphaera sedula DSM 5348]
          Length = 217

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 35/216 (16%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
             QNFL+D  I+ +I   +  L    +IEIG G GNL++ L        + IE D +  P
Sbjct: 3   YSQNFLVDQEIISRIVGYASELR--PLIEIGCGKGNLSRFL-----NPDVCIELDSRLLP 55

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            L   +         +Q DA K+   +        +I+++LPY+I +         D++P
Sbjct: 56  FLSQYNP--------VQGDARKLPVSR-------GQIVSSLPYSITSDFFVEVSRLDSFP 100

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
                L L+ Q++   +I           LS L  +  + + +  I P  F P PKV S+
Sbjct: 101 ----RLLLVLQEDFVNKILDYP-----TFLSFLLNYYYRISELMVIPPKAFRPVPKVFSS 151

Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           ++      N      E    I +     R KTL+ +
Sbjct: 152 LVLLERRRNYNEIVTE----IIKCLSSYRNKTLKNA 183


>gi|159161826|gb|ABW95905.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             +R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNSRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHVSDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K +++  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|164604803|gb|ABY61962.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 229

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 26/243 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +  
Sbjct: 1   VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLN 58

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
            R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F
Sbjct: 59  TRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGF 114

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
            K   +          +  L +L   +     +  +    F P PKV S +I    H   
Sbjct: 115 YKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTD 165

Query: 215 IPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCR 271
           +P     L            K + +  ++L  +N  HQA         NLS    E    
Sbjct: 166 VPDKYWKLYT------HFVSKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTITYEQVLS 217

Query: 272 ITN 274
           I N
Sbjct: 218 IFN 220


>gi|94995100|ref|YP_603198.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|282882751|ref|ZP_06291358.1| rRNA adenine N-6-methyltransferase [Peptoniphilus lacrimalis 315-B]
 gi|304439175|ref|ZP_07399093.1| rRNA adenine N-6-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|307067521|ref|YP_003876487.1| dimethyladenosine transferase [Streptococcus pneumoniae AP200]
 gi|313892158|ref|ZP_07825751.1| rRNA adenine N-6-methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|326802744|ref|YP_004320562.1| rRNA adenine N-6-methyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|2190972|gb|AAB60941.1| erythromycin resistance methylase [Streptococcus pyogenes]
 gi|94548608|gb|ABF38654.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|215263203|emb|CAQ56289.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes]
 gi|281297412|gb|EFA89901.1| rRNA adenine N-6-methyltransferase [Peptoniphilus lacrimalis 315-B]
 gi|304372307|gb|EFM25895.1| rRNA adenine N-6-methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|306409058|gb|ADM84485.1| Dimethyladenosine transferase (rRNA methylation) [Streptococcus
           pneumoniae AP200]
 gi|313119296|gb|EFR42495.1| rRNA adenine N-6-methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|326650330|gb|AEA00513.1| rRNA adenine N-6-methyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 243

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 98/253 (38%), Gaps = 24/253 (9%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I + +       +IEIG+G G+ T+ L+ +  R V  IE D+      
Sbjct: 10  QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K       N +++I +D LK  F K  +     +I  N+PYNI T ++        +   
Sbjct: 69  KKAVEPFQN-IKVIHEDILKFSFPKNTD----YKIFGNIPYNISTDIVKKI----AFDSQ 119

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            +   L+ ++   +R+   +       L +L        ++  +    F P P V S +I
Sbjct: 120 AKYSYLIVERGFAKRLQNTQR-----ALGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174

Query: 207 HFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR-AENL 264
               H    +    +  +           K + +    L  +N L Q     N+   + L
Sbjct: 175 VLERHKPFILKKDYKKYRFFVY-------KWVNREYHVLFTKNQLRQVLKHANVTDLDKL 227

Query: 265 SIEDFCRITNILT 277
           S E F  + N   
Sbjct: 228 SNEQFLSVFNSYK 240


>gi|291386470|ref|XP_002709749.1| PREDICTED: transcription factor B2, mitochondrial-like [Oryctolagus
           cuniculus]
          Length = 392

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 120/324 (37%), Gaps = 59/324 (18%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +  +++ PK+Y+    L +  +   I   S         E   GPG LTQ LL  GA KV
Sbjct: 56  VCKHRLDPKRYVSSRGLAETLVP--ILRGSQKDPRSLFSECNPGPGVLTQALLETGA-KV 112

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--- 130
           + +E D+ F P L+ + +    +LE++  D  K+D  K   +  PI I   L  N+G   
Sbjct: 113 VALESDRNFIPRLESLGNNLDGKLEVVYCDFFKLDPRKCGLVRPPIMISHVLFQNLGIKA 172

Query: 131 ------------------------TRLLFNWISADTWPPFWESLTLLF--QKEVGERITA 164
                                    +LL++  S  +          +F  +KE  + +  
Sbjct: 173 LPWSAGIPLKIIGIFPIKNERKALWKLLYDLYSCTSIYRHGRVELNMFISEKEYQKLMAN 232

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFF---------PSPKVTSTV---------I 206
            +N   Y  LSVL     +   +  + P   F           PK   ++         I
Sbjct: 233 PRNPNLYQVLSVLWQVACEIK-VLHVEPWSSFDVYTQNGQLKKPKHKDSLERMQQNLYFI 291

Query: 207 HFIPHLNPI-----PCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETN 258
              P  N       P   +    + +  FGKR  +L    +SL  +   ++L Q      
Sbjct: 292 RMTPRRNLFTENLTPINYDVFFHMVKHCFGKRNASLIEHLRSLSPVDAMDILMQTRKNEK 351

Query: 259 LRAENLSIEDFCRITNILTDNQDI 282
           ++  ++  +DF R+   +  ++D 
Sbjct: 352 VKITDMYPQDFKRLFETIECSKDY 375


>gi|159161720|gb|ABW95854.1| ErmB [uncultured bacterium]
 gi|159161724|gb|ABW95856.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVDSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|12081903|dbj|BAB20748.1| ErmGM [Staphylococcus aureus]
 gi|57207872|dbj|BAD86539.1| ermGM [Staphylococcus aureus]
          Length = 244

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 94/258 (36%), Gaps = 28/258 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNF+     + KI  +        V EIG+G G+ T  L+      V VIE D    
Sbjct: 7   KFSQNFITSKRHINKIMSNLELNRNDNVFEIGSGKGHFTLELV-QKCNYVTVIEIDSNLC 65

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
              ++  + + N   II  D L+      F  +   +I  N+PY I T ++   +     
Sbjct: 66  IQTQNKVTNYDN-FRIINKDILQFK----FPNNKAYKIYGNIPYYISTDIVRKIVFESEA 120

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K +     +         L++L       +++  I    F P PK+ S
Sbjct: 121 TVSYLIVEEGFAKRLLNTNRS---------LALLLMTEVDISILSKIPKEYFHPKPKINS 171

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ----AGIETNL 259
           ++I    H    P  +    K     F    K + Q   +L  +N  ++    A I+   
Sbjct: 172 SLIILKRH----PSKISYKDKKMYNNFVM--KWVNQEYSKLFTKNQFNKALNYAKIKDLK 225

Query: 260 RAENLSIEDFCRITNILT 277
              N++ E F  + N   
Sbjct: 226 ---NINFEQFLSVFNSYK 240


>gi|159161778|gb|ABW95882.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIRKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|309777023|ref|ZP_07671992.1| putative rRNA (adenine-N(6)-)-methyltransferase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915233|gb|EFP61004.1| putative rRNA (adenine-N(6)-)-methyltransferase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 274

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 18/238 (7%)

Query: 23  KYMG--QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           K +G  QNFL++  +++++   S       VIEIG G G +T +L +  A +V+ +E DQ
Sbjct: 2   KNLGYSQNFLVNKKLVERLISKSNIDVTDYVIEIGPGKGIITDVL-SQHAGEVVAVEYDQ 60

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           + +  L    S   + +  I  D LK        ++   +I +N+P+ I   ++      
Sbjct: 61  ELYNNLVRYHSH--DNVTYIFGDFLKYKLP----LNRRYKIFSNIPFQITADIIRKLTDD 114

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
              P     + ++ Q+E  ++        + G  + +   + K  +        FFPSP 
Sbjct: 115 VNPPS---DINIIIQREAAKKNCGIPLQKYEGFRAAIIKAQYKVEITHSFKRSDFFPSPN 171

Query: 201 VTSTVIHFIPHLNPI-PCCLESLKKITQEAFGK---RRKTLRQSLKRLGGENLLHQAG 254
           V + ++H     + +    L++ K +   AF     + +T ++ L  L     + + G
Sbjct: 172 VDTVMLHMQLWDDRLSGDDLQNYKDLV--AFFYTNIKGETAKERLSILFSNEQIKRLG 227


>gi|159161820|gb|ABW95902.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|333031235|ref|ZP_08459296.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides coprosuis DSM
           18011]
 gi|18652656|gb|AAK07612.2|AF319779_1 macrolide-lincosamide-streptogramin B resistance protein
           [Bacteroides coprosuis DSM 18011]
 gi|332741832|gb|EGJ72314.1| rRNA (adenine-N(6)-)-methyltransferase [Bacteroides coprosuis DSM
           18011]
          Length = 266

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 110/254 (43%), Gaps = 17/254 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P ++ GQ+F +D  ++K   + S      TV++IGAG G LT  LL     KVI IE D 
Sbjct: 7   PVRFTGQHFTIDKVLIKDAIKESNINQHDTVLDIGAGKGFLTVHLLK-NVDKVIAIENDV 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+     H   ++++  D     +  F     P ++++N+P+ I + +  + +  
Sbjct: 66  ALSQHLRKKF-IHAQNVQVVSCD-----YRNFVVPKVPFKVVSNIPFGITSDIFSSLMFE 119

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           +    ++   +++ Q E  +++ +   S  Y  L+VL         +++I+P  F P P 
Sbjct: 120 NV--EYFLCGSIILQSEPAKKLFS---SKVYNPLTVLYHTYYDLKFLYEINPESFLPPPT 174

Query: 201 VTSTVIHFIPHLNPIPCCLE-SLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAGI 255
           V S ++        +   L+            K   T++ ++K +  +  +     + G+
Sbjct: 175 VKSALLRIERKQISLDIGLKVKYLNFVSYMLQKPDLTVKTAMKSIFRKKQVRSISEKFGV 234

Query: 256 ETNLRAENLSIEDF 269
           + N +   L+   +
Sbjct: 235 DLNSKIVCLTPNQW 248


>gi|159161782|gb|ABW95884.1| ErmB [uncultured bacterium]
 gi|159161784|gb|ABW95885.1| ErmB [uncultured bacterium]
 gi|159161805|gb|ABW95895.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|224130164|ref|XP_002320768.1| predicted protein [Populus trichocarpa]
 gi|222861541|gb|EEE99083.1| predicted protein [Populus trichocarpa]
          Length = 210

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 17/190 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +  H+    L+     P+K +GQ+++L+  I +++  S+   +G  ++EIG G G+LT +
Sbjct: 26  DDYHATLKALNSRDRRPRKSLGQHYMLNDEINEQLVASANVEEGDLILEIGPGTGSLTNV 85

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-----------FEKFF 113
           L+  GA  V+ IEKD     ++++  +   NR +++Q+D +K                  
Sbjct: 86  LIDAGA-TVLAIEKDAHMAALVRERFADT-NRFKVLQEDFIKCHIRSHMLSMLESMGSLS 143

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172
                 +++AN+P+NI T ++   +        +  + LL Q E   R+      +  Y 
Sbjct: 144 EKPRYAKVVANIPFNISTDVIKQLL---PTGDIFSEIVLLLQDETALRLVESSLRTSEYR 200

Query: 173 RLSVLTGWRT 182
            +++   + +
Sbjct: 201 PINIFVNFYS 210


>gi|159161762|gb|ABW95874.1| ErmB [uncultured bacterium]
 gi|159161790|gb|ABW95888.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161731|gb|ABW95859.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 90/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PYN+ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K +++  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|34147930|gb|AAQ62543.1| erythromycin resistance methylase [Streptococcus sp. 'group G']
          Length = 219

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 26/239 (10%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRITN 274
              L       F    K + +  ++L  +N  HQA         NLS    E    I N
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTITYEQVLSIFN 216


>gi|159161751|gb|ABW95869.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L         +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTHVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161822|gb|ABW95903.1| ErmB [uncultured bacterium]
 gi|159161828|gb|ABW95906.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 90/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PYN+ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K +++  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161798|gb|ABW95892.1| ErmB [uncultured bacterium]
 gi|159161811|gb|ABW95898.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161788|gb|ABW95887.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F +  +   +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSERL-K 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         +LS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210


>gi|8570453|gb|AAF76480.1|AC020622_14 Identical to dimethyladenosine transferase (PFC1) from Arabidopsis
           thaliana gb|AF051326 and contains a Ribosomal RNA
           Adenine Dimethylases PF|00398 domain. This gene may be
           cut off
          Length = 239

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 93/190 (48%), Gaps = 17/190 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +  HS    L+     P+K +GQ+++L+ +I  ++A ++   +G  V+EIG G G+LT +
Sbjct: 55  DDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNV 114

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----------- 113
           L+ LGA  V+ IEKD     ++ +  +   ++ +++Q+D +K                  
Sbjct: 115 LINLGA-TVLAIEKDPHMVDLVSERFAG-SDKFKVLQEDFVKCHIRSHMLSILETRRLSH 172

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK-NSPHYG 172
             S+  ++++NLP+NI T ++   +        +  + LL Q E   R+      +  Y 
Sbjct: 173 PDSALAKVVSNLPFNISTDVVKLLL---PMGDIFSKVVLLLQDEAALRLVEPALRTSEYR 229

Query: 173 RLSVLTGWRT 182
            +++L  + +
Sbjct: 230 PINILINFYS 239


>gi|159161755|gb|ABW95871.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PYN+ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161757|gb|ABW95872.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K +++  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|284041860|ref|YP_003392200.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM
           14684]
 gi|283946081|gb|ADB48825.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM
           14684]
          Length = 256

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 111/263 (42%), Gaps = 23/263 (8%)

Query: 21  PKKY-MGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            ++  + QNF++D   L+ + ++         V+++GAG G +T  L    AR V+ +E+
Sbjct: 8   ARRSALAQNFIVDERALRTLLDAVPLDAARDVVVDLGAGRGAVTAQLAPRAAR-VLAVER 66

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D  +   L+  +++    +E+++ DA  V F      S+P +++ANLP+N GT L+   +
Sbjct: 67  DPAWAHELRTRAAREWRNVEVVEGDARAVAFP-----SAPFKVVANLPFNAGTGLVRRLL 121

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +            ++ Q E   R+         GR         +  +   I    F P 
Sbjct: 122 AD---GHGLAGAAVVLQLEAARRLAGG------GRFGATWAPWFELAVGARIPARAFRPV 172

Query: 199 PKVTSTVIHFIPHLN--PIPCCLESLKKITQEAFGKRRKTLRQSLK----RLGGENLLHQ 252
           P+V + V+           P    +  ++  + F    +T+   L+    R     +L  
Sbjct: 173 PRVDAAVLTVRARQPALLSPAAFAAHAQLVDKVFAASGQTVAARLQRAVGRRRAARMLDA 232

Query: 253 AGIETNLRAENLSIEDFCRITNI 275
           A +E      +++ E + R+T +
Sbjct: 233 AALEPRATLGDVAPEVWARLTRV 255


>gi|159161759|gb|ABW95873.1| ErmB [uncultured bacterium]
 gi|159161776|gb|ABW95881.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         +LS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210


>gi|3646270|emb|CAA08815.1| putative dimethyladenosine transferase [Homo sapiens]
          Length = 157

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 7/126 (5%)

Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC 217
              R+ A+     Y RLS+ T    +   +  +  + F P PKV S+V+   P   P P 
Sbjct: 3   FALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPI 62

Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIEDFCRI 272
             +    + +  F ++ KTL  + K    + LL +       +   +  E+ SI D  +I
Sbjct: 63  NFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHNIIIPEDFSIAD--KI 120

Query: 273 TNILTD 278
             ILT 
Sbjct: 121 QQILTS 126


>gi|159161816|gb|ABW95900.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PYN+ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K +++  ++L  +N  HQA         +LS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNDLS 210


>gi|159161716|gb|ABW95852.1| ErmB [uncultured bacterium]
 gi|159161739|gb|ABW95863.1| ErmB [uncultured bacterium]
 gi|159161747|gb|ABW95867.1| ErmB [uncultured bacterium]
 gi|159161753|gb|ABW95870.1| ErmB [uncultured bacterium]
 gi|159161772|gb|ABW95879.1| ErmB [uncultured bacterium]
 gi|159161800|gb|ABW95893.1| ErmB [uncultured bacterium]
 gi|159161803|gb|ABW95894.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161780|gb|ABW95883.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +    +      + L
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVV----FESHASDIYL 110

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + ++   +R      +     L +L   +     +  +    F P PKV S +I    H 
Sbjct: 111 IVEEGFYKRTLGIHRT-----LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161718|gb|ABW95853.1| ErmB [uncultured bacterium]
 gi|159161726|gb|ABW95857.1| ErmB [uncultured bacterium]
 gi|159161743|gb|ABW95865.1| ErmB [uncultured bacterium]
 gi|159161749|gb|ABW95868.1| ErmB [uncultured bacterium]
 gi|159161770|gb|ABW95878.1| ErmB [uncultured bacterium]
 gi|159161796|gb|ABW95891.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161824|gb|ABW95904.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         +LS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210


>gi|159161809|gb|ABW95897.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PYN+ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYNLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         +LS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210


>gi|326513775|dbj|BAJ87906.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 227

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 18/207 (8%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +L+  + +++  ++G   G  V+EIG G G+L    L      V+ +EKD+    +++D 
Sbjct: 1   MLNARVNEELVAAAGVEVGDVVLEIGPGTGSL-TAALLAAGATVVAVEKDKHMATLVRDR 59

Query: 90  SSQHPNRLEIIQDDALKVDFEKFF---------NISSPIRIIANLPYNIGTRLLFNWISA 140
                 +L++I++D  K      F               +++ANLP+N+ T ++   +  
Sbjct: 60  FGST-EQLKVIEEDITKFHVHSHFLPILDEKSRGTKKYAKVVANLPFNVSTEVVKQIL-- 116

Query: 141 DTWPPFWESLTLLFQKEVGERIT-AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                 +  + L+ Q E   R+  A   +P Y  ++V   + ++    F +    FFP P
Sbjct: 117 -PMGDVFSVMVLMLQDEAALRLANASIQTPEYRPINVFVNFYSEPEYKFKVERANFFPQP 175

Query: 200 KVTSTVIHFIPH---LNPIPCCLESLK 223
            V   VI F        P     +S  
Sbjct: 176 TVDGGVIRFKIKDAGEYPPVSSNKSFF 202


>gi|159161722|gb|ABW95855.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKEVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----HTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161733|gb|ABW95860.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TNVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|290559283|gb|EFD92620.1| ribosomal RNA adenine methylase transferase [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 262

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 107/241 (44%), Gaps = 27/241 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           M     ++  ++  + I      GQNFL+D N+L+     +  +   T+++IGAG G++ 
Sbjct: 1   MVTLRETITKLVKDFDIKGDNDSGQNFLVDENVLEIEINEAHLVSEDTILDIGAGFGSIE 60

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
                     VI IE+D + +  L D    + N ++I+  DAL + + +F       +I+
Sbjct: 61  TKASKKC--HVIAIERDIKCYSYLIDKYEINAN-IQIVNADALNMIYPEF------TKIV 111

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           +N PYNI  R++      +     +    ++  K + + + + ++   +   S +     
Sbjct: 112 SNPPYNIADRIIEKISHYN-----FADSIMILPKTMADELCSIQSHTSF---SAINKLFM 163

Query: 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           +   + ++    FFP P+VTS ++      N           I Q+ F +R  TL+ +++
Sbjct: 164 EFYKIMEVERTSFFPEPRVTSVMVRIKKKEN----------NILQDTFRRREMTLKNAIR 213

Query: 243 R 243
            
Sbjct: 214 N 214


>gi|159161735|gb|ABW95861.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYRKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161737|gb|ABW95862.1| ErmB [uncultured bacterium]
 gi|159161745|gb|ABW95866.1| ErmB [uncultured bacterium]
 gi|159161768|gb|ABW95877.1| ErmB [uncultured bacterium]
 gi|159161794|gb|ABW95890.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         +LS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210


>gi|159161766|gb|ABW95876.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRASDIYLVVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHPQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161792|gb|ABW95889.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 86/221 (38%), Gaps = 21/221 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
             +P     L       F    K + +  ++L  +N  HQA
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQA 200


>gi|159161764|gb|ABW95875.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGRGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         +LS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210


>gi|23499331|gb|AAN37395.1| erythromycin-resistant methylase [Streptococcus pyogenes]
          Length = 238

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 28/252 (11%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I + +       +IEIG+G G+ T+ L+ +  R V  IE D+      
Sbjct: 10  QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K       N +++I +D LK  F K  +     +I  N+PYNI T ++        +   
Sbjct: 69  KKAVESFQN-IKVIHEDILKFSFPKNTD----YKIFGNIPYNISTDIVKKI----AFDSQ 119

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            +   L+ ++   +R+   +       L +L        ++  +    F P P V S +I
Sbjct: 120 AKYSYLIVERGFAKRLQNTQR-----ALGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174

Query: 207 HFIPHLN-PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
               H    +    +  +           K + +    L  +N L Q     N+   +L 
Sbjct: 175 VLERHKPFILKKDYKKYRFFVY-------KWVNREYHVLFTKNQLRQVLKHANVT--DLD 225

Query: 266 I---EDFCRITN 274
               E F  + N
Sbjct: 226 KLXNEQFLSVFN 237


>gi|164604807|gb|ABY61964.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 228

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 26/242 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   
Sbjct: 1   LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNT 58

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +   F 
Sbjct: 59  RVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFY 114

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           K   +          +  L +L   +     +  +    F P PKV S +I    H   +
Sbjct: 115 KRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDV 165

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRI 272
           P     L       F    K + +  ++L  +N  HQA         NLS    E  C  
Sbjct: 166 PDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTVTYEQVCLF 217

Query: 273 TN 274
            N
Sbjct: 218 FN 219


>gi|225350652|gb|ACN88190.1| adenine-N6 methyltransferase [Streptococcus pyogenes]
 gi|225350654|gb|ACN88191.1| adenine-N6 methyltransferase [Streptococcus pyogenes]
          Length = 180

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 15/188 (7%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ ++PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170

Query: 204 TVIHFIPH 211
            +I    H
Sbjct: 171 VLIKLTRH 178


>gi|258411260|ref|ZP_05681537.1| rRNA methylase Erm [Staphylococcus aureus A9763]
 gi|257839989|gb|EEV64456.1| rRNA methylase Erm [Staphylococcus aureus A9763]
          Length = 221

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 24/236 (10%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                  VIEIG+G G+ T+ L+ + +R V  IE D     + K+  +   N +++IQ D
Sbjct: 5   NISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVTKEAVNPSEN-IKVIQTD 62

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
            LK  F K  N     +I  N+PYNI T ++       T+    +   L+ +K   +R+ 
Sbjct: 63  ILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQAKYSYLIVEKGFAKRLQ 114

Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESL 222
             +       L +L        M+  + P  F P P V S +I    H   I     +  
Sbjct: 115 NLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKY 169

Query: 223 KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN-LSIEDFCRITNILT 277
           +           K + +  + L  +N   QA    N+   N LS E F  I N   
Sbjct: 170 RSFVY-------KWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYK 218


>gi|159161818|gb|ABW95901.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +        TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKGTDTVYEIGTGKGHLTAKLAKI-SKQVTSIESDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K +++  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVKREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|159161807|gb|ABW95896.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASVIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         +LS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210


>gi|159161728|gb|ABW95858.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKEVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         +LS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNDLS 210


>gi|159161774|gb|ABW95880.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P P V S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPIVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|109019771|ref|XP_001088795.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Macaca
           mulatta]
 gi|90085601|dbj|BAE91541.1| unnamed protein product [Macaca fascicularis]
          Length = 396

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 107/301 (35%), Gaps = 55/301 (18%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            L +I     +     ++E   GPG LT+ LL  GA  V+ +E D+ F P L+ +     
Sbjct: 83  TLAQIVCGKPNRPPHLLLECNPGPGILTEALLEAGA-TVVALESDKTFIPHLESLGKNLD 141

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG------------------------ 130
            +L +I  D  ++D      I  P      L  N+G                        
Sbjct: 142 GKLRVIHCDFFRIDPRSGGAIKPPAMSSEGLFKNLGVEEVPWTAGVPLKVFGMFPSRGEK 201

Query: 131 ---TRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
               +L ++  S  +   F   E    + +KE  + +   +N   Y  LSV+     +  
Sbjct: 202 RALWKLAYDLYSCSSIYKFGRIEINMFIGEKEFQKLMADPRNRGLYYVLSVVWQVACEIK 261

Query: 186 MM-------FDI----SPHVFFPSPKVTS------TVIHFIPHLNPI-----PCCLESLK 223
           ++       FD+             +V         +I   P  N       P       
Sbjct: 262 VLHMEPWSSFDVYTRSGRLENTKRKEVLELLQQNLYLIQMTPRRNLFANSLTPMNYNIFF 321

Query: 224 KITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
            + +  FGKR  T+    +SL  L   ++L Q G + + +  N+  EDF R+   +  ++
Sbjct: 322 HLLKHCFGKRSATVIDHLRSLTPLDAADILMQIGKKEDEKVVNMYPEDFKRLFETIESSE 381

Query: 281 D 281
           D
Sbjct: 382 D 382


>gi|282877321|ref|ZP_06286149.1| ribosomal RNA adenine dimethylase family protein [Prevotella
           buccalis ATCC 35310]
 gi|288926425|ref|ZP_06420346.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17]
 gi|281300560|gb|EFA92901.1| ribosomal RNA adenine dimethylase family protein [Prevotella
           buccalis ATCC 35310]
 gi|288336798|gb|EFC75163.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17]
          Length = 266

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 12/192 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P +Y GQ+F +D  ++    + +   +  TVI+IGAG G LT  L+      +I IE D+
Sbjct: 7   PVRYTGQHFTIDKVLIDDAIKIAKINESDTVIDIGAGKGFLTVHLV-RQCTNIIAIENDK 65

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               ILK+  S + N ++II  D       K        ++++N+P+ I + +L + +  
Sbjct: 66  SLLSILKNKFSNNTN-VKIIDCDFRCYTIPK-----RNFKVVSNIPFRITSEILKSLM-- 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 +   +L+ Q E  +++ ++K    Y    V         +M++IS   F P PK
Sbjct: 118 FDSVEHFMGGSLIMQLEPAQKLFSKKVFNPYI---VFYHTFFDLKLMYEISHESFLPPPK 174

Query: 201 VTSTVIHFIPHL 212
           V S ++      
Sbjct: 175 VKSALLKIERKK 186


>gi|257056840|ref|YP_003134672.1| dimethyladenosine transferase (rRNA methylation) [Saccharomonospora
           viridis DSM 43017]
 gi|256586712|gb|ACU97845.1| dimethyladenosine transferase (rRNA methylation) [Saccharomonospora
           viridis DSM 43017]
          Length = 269

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 28/259 (10%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +FL+  ++L  +  +        V+++GAGPG +T  L    AR V+ +E+D +F   L 
Sbjct: 20  HFLVSKDVLDTLVRTCTPGPDDLVLDLGAGPGVVTAALARTHAR-VLAVERDPEFVRTLN 78

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
               +H +R+ +IQ D   V             ++AN PY++ T LL          P  
Sbjct: 79  SRF-RHNDRVRVIQADIRTV-----ALPRRDFLVVANPPYSLSTPLLRR--LLGGRRPNL 130

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH 207
            S  L  +    +R+T         R       R    ++  +    F P P V S V+ 
Sbjct: 131 RSAALTVEWGFAKRVTTPV---PASRELAWWASRFDIRLVRKVPADHFRPQPTVDSAVLA 187

Query: 208 FIPHLNPIPCCL---ESLKKITQ------EAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
                      +   E L  + +       A  +R       +       LL +  IE  
Sbjct: 188 IRRRPLSRTTEILLGEILDAVERSPYRSAHALVRR-------IGLGDARRLLKRCDIEPG 240

Query: 259 LRAENLSIEDFCRITNILT 277
            RA  ++  ++ R+   ++
Sbjct: 241 RRAATITPREWRRVAETVS 259


>gi|307103105|gb|EFN51369.1| hypothetical protein CHLNCDRAFT_141143 [Chlorella variabilis]
          Length = 388

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 11/166 (6%)

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRL 174
              + ++ANLPY I    L   +          +L  + Q EVG R+T +   +  +  +
Sbjct: 193 DPRVLVVANLPYYITKDCLAQML---PLGGRVAALYFMLQHEVGVRLTQEDPGASDWRAM 249

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFG 231
           +++T + ++A  +F+I    + PSPKV   V+ F    P             K+ ++AF 
Sbjct: 250 NLVTQYYSQAQYLFEIDRRKYHPSPKVNGAVVRFALTPPSQRLAVPSEPDFLKLIKKAFS 309

Query: 232 KRRKTLRQSLKRLGGENLL----HQAGIETNLRAENLSIEDFCRIT 273
           +RRK +R +L+ L     +      AG+  + RA++L++  F  + 
Sbjct: 310 QRRKVVRNALRPLYEPGQVAAALAAAGLSEDARAQDLTLLQFGELA 355



 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 6  KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI 49
          K+   +  L    + PKK +GQNF+LD ++L  I  ++G   G 
Sbjct: 33 KAADTRKRLQEQNLRPKKSLGQNFMLDDDVLAAIVAAAGVQPGD 76


>gi|227327729|ref|ZP_03831753.1| dimethyladenosine transferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 116

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H             +K  GQNFL D  ++  I  +     G  ++EIG G G LT
Sbjct: 1   MNNRVHQ--------GHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAIVEIGPGLGALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI-SSPIRI 121
             +     R   VIE D+     L +      ++L IIQ DA+ +DF         P+R+
Sbjct: 53  APVGDRMDR-FTVIELDRDLAARL-ETHPTLKDKLTIIQQDAMTIDFAALAEQAGQPLRV 110

Query: 122 I 122
            
Sbjct: 111 F 111


>gi|159161786|gb|ABW95886.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 87/233 (37%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAGCFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       +  R        ++L  +N  HQA         +LS
Sbjct: 166 TDVPDKYWKLYTYFVSTWVNR------EYRQLFTKNQFHQAMKHAK--VNDLS 210


>gi|72528309|gb|AAZ73008.1| ribosomal methylase Erm34 [Bacillus clausii]
          Length = 240

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 18/231 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +LK+I + +      TV+E+GAG G LT +L    A +V+ +E DQ+    L+     
Sbjct: 1   KRLLKEIVDKADVSVRDTVLELGAGKGALTTILSER-ADRVLAVEYDQKCIEALQWKLVG 59

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             N + ++  D +KV        + P  +++N+PY I T ++   ++        +   +
Sbjct: 60  SKN-VSVLHQDIMKV-----ALPTEPFVVVSNIPYAITTAIMKMLLNNPK--NKLQRGAI 111

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + +K   +R T+      Y    +             IS   F P PKV S ++  +   
Sbjct: 112 VMEKGAAKRFTSVSPKDAYV---MAWHMWFDIHYERGISRSSFSPPPKVDSALVRIVRKQ 168

Query: 213 NPIPCCLES--LKKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIET 257
           +P+    E+  +      A    R    + LR        + +    G++ 
Sbjct: 169 HPLFPYKEAKTMHDFLSYALNNPRAPLDQVLRGIFTAPQAKKVRQAIGVKP 219


>gi|83702392|gb|ABC41552.1| erythromycin ribosome methylase [Gemella morbillorum]
          Length = 213

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  T  EIG G G+LT  L  + +++V  IE D   F +  D   +
Sbjct: 1   EKVLNQIIKQLNLKETDTFYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSDKL-K 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV+S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVSSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|224417853|ref|ZP_03655859.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491]
 gi|253827192|ref|ZP_04870077.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491]
 gi|253510598|gb|EES89257.1| dimethyladenosine transferase [Helicobacter canadensis MIT 98-5491]
          Length = 128

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 4/128 (3%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + QKEV  +  A +N   +  LSVL     +A M+F++ P  F P PKVTS V     + 
Sbjct: 1   MTQKEVALKFCAIQNQSDFSALSVLAQSVGEAKMLFEVPPSAFVPQPKVTSAVFLIEKNH 60

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENLSIED 268
            P    L  L+++ + AF   RKTL  +L ++  +      L   GI +N R   +   D
Sbjct: 61  IPSSDFLVKLEELLKIAFSAPRKTLFNNLSKVYSKEKIMETLETLGIVSNKRPHEIDTTD 120

Query: 269 FCRITNIL 276
           + R+  +L
Sbjct: 121 YHRLLKLL 128


>gi|330938462|gb|EGH42069.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 90

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             Y+   +K  GQNFL D  ++ KI  +  +     ++EIG G G LT+ LL  GA ++ 
Sbjct: 3   EQYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLDSGA-QLD 61

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           V+E D+   PIL    +  PN   + Q DA
Sbjct: 62  VVELDKDLIPILNGQFASKPN-FNLHQGDA 90


>gi|84663565|gb|ABC60096.1| erythromycin ribosome methylase [Gemella haemolysans]
          Length = 213

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ N+PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F   PKV S +I    H 
Sbjct: 115 GFSKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHLKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|256965588|ref|ZP_05569759.1| N-methyltransferase [Enterococcus faecalis HIP11704]
 gi|256956084|gb|EEU72716.1| N-methyltransferase [Enterococcus faecalis HIP11704]
          Length = 171

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIKQLLKLPAECFHPKPKVNS 170

Query: 204 T 204
            
Sbjct: 171 A 171


>gi|221091001|ref|XP_002169774.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 175

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
               +  ++  Y +  KK + QNF+LDLN+  KIA  +       VIE+G+GPG+L++ L
Sbjct: 12  PMPRISDLMRLYGLRAKKQLSQNFILDLNVTDKIARKADVF-DCNVIEVGSGPGSLSRSL 70

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           L  G R +  +E D++F P L+ +       + I   D LK D  K
Sbjct: 71  LNAGLRHLYAVEIDKRFLPSLELLQDASDGHMSIYHADILKFDMVK 116


>gi|159161741|gb|ABW95864.1| ErmB [uncultured bacterium]
          Length = 213

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 23/233 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +I +     +  TV EIG   G+LT  L  + +++V  IE D   F  L     +
Sbjct: 1   EKVLNQIIKQLNLKETDTVYEIGTSKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLK 58

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R+ +I  D L+      F      +I+ ++PY++ T+++   +        +  +  
Sbjct: 59  LNTRVTLIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEE 114

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
            F K   +          +  L +L   +     +  +    F P PKV S +I    H 
Sbjct: 115 GFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHT 165

Query: 213 NPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLS 265
             +P     L       F    K + +  ++L  +N  HQA         NLS
Sbjct: 166 TDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLS 210


>gi|261886276|ref|ZP_06010315.1| dimethyladenosine transferase [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 168

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 9/158 (5%)

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           ++ANLPY + T ++   I         + L ++ Q+EV  + +++     +  L++LT  
Sbjct: 1   MVANLPYYVATNMILKAIDDKNC----KGLVVMIQREVAIKFSSEAGDKEFSSLAILTWL 56

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCLESLKKITQEAFGKRRKTLRQ 239
           + K  ++FD+    F P PKV S+VI  I   +  +    ++ K   + AF   RKTL +
Sbjct: 57  KGKCELLFDVPSSAFNPPPKVISSVIRIIKDRDLSLNLKYDNFKNFLRVAFSAPRKTLLK 116

Query: 240 SLKRLGGENLLH----QAGIETNLRAENLSIEDFCRIT 273
           +L  L   + L        +   +R   LS+  + ++ 
Sbjct: 117 NLSNLVQRDRLEIFFNTENLSHTIRPRKLSVALYLKLF 154


>gi|284033869|ref|YP_003383800.1| ribosomal RNA adenine methylase transferase [Kribbella flavida DSM
           17836]
 gi|283813162|gb|ADB35001.1| ribosomal RNA adenine methylase transferase [Kribbella flavida DSM
           17836]
          Length = 182

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 21/192 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            +   G + L D    +++ +++G   G  V+++GAG G LT  L+  GA  V+ +E   
Sbjct: 7   ARGAWGWHPL-DSRWAQRVVDAAGVRPGDLVLDVGAGLGALTAPLVRAGAD-VVAVELHP 64

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+   +  P  + +++ DA           + P R++++ PY I T LL   +S 
Sbjct: 65  HRADRLRRRFADAP--VRVVRADA-----ADLRLPTRPFRVVSSPPYGISTELLKRLLSP 117

Query: 141 DTWPPFWESLTLLFQKEVGERITAQ--KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            +      S  L+ Q++V  R           + R           ++   +    F P 
Sbjct: 118 RS---RLVSADLVLQRQVVNRWVDGRAPGRARWSR-------YYDTSIGIRLPRKAFTPP 167

Query: 199 PKVTSTVIHFIP 210
           P V S V+    
Sbjct: 168 PHVDSAVLRIQR 179


>gi|300912862|ref|ZP_07130301.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|300885836|gb|EFK81042.1| rRNA (adenine-N(6)-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 182

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 15/187 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            ++    H N  +++  D L+  F K    +   +I  N+PYNI T ++   +    +  
Sbjct: 68  TENKLVDHDN-FQVLNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDS 118

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             + + L+ +    +R+   K S     L++L       +++  +    F P PKV S++
Sbjct: 119 IADEIYLIVEYGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSL 173

Query: 206 IHFIPHL 212
           I      
Sbjct: 174 IRLNRKK 180


>gi|70606438|ref|YP_255308.1| dimethyladenosine transferase [Sulfolobus acidocaldarius DSM 639]
 gi|68567086|gb|AAY80015.1| ribosomal RNA adenine dimethylase [Sulfolobus acidocaldarius DSM
           639]
          Length = 222

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 34/222 (15%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            K  +GQ+FL D++I+KK+           VIEIG+G G +T+ L     +  I IE D 
Sbjct: 1   MKNKLGQHFLNDISIIKKLISLVD-HSTRPVIEIGSGNGVITKFL-----KPDIAIEIDV 54

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                L+          ++I  D         +  ++  +++++LPY I T      I  
Sbjct: 55  SLINHLR--------NYQLIIGD-------GRYLPTTRGQVVSSLPYYITTDFFHEAIKL 99

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
           D        L L+ QK+  ++IT++  S  Y     L  +  K ++   + P  F P+PK
Sbjct: 100 DN----IRKLVLIVQKDFIDKITSKSTSISY-----LLNYYYKISLFDIVPPSAFSPNPK 150

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           V S ++ F           E ++ I++     R K+L+ +L 
Sbjct: 151 VFSQLVVFDRTRKYNKNISEIIECISK----YRNKSLKNALS 188


>gi|149409344|ref|XP_001510710.1| PREDICTED: similar to mitochondrial transcription factor b1,
           partial [Ornithorhynchus anatinus]
          Length = 156

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP-IPCCL 219
           R+TA   S    RLS++  +       F I    F P P+V   VIHF P + P I    
Sbjct: 1   RLTASTGSRQRSRLSIMAQYLCNVQNCFTIPGRAFLPKPEVDVGVIHFTPLVEPQISQPF 60

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGG--------ENLLHQAGIETNLRAENLSIEDFCR 271
           + ++K+ Q  F  RRK   + +  L          + +L  A ++  LR   LSI  F  
Sbjct: 61  KLVEKVVQNVFQFRRKYCYKGVGNLFPNTQRLERTKEMLMVADVDPTLRPGQLSILQFKS 120

Query: 272 ITNILTDNQD 281
           + +      D
Sbjct: 121 LCDAYRKMCD 130


>gi|159232386|emb|CAM96571.1| 23S rRNA methyltransferase [Streptomyces ambofaciens]
          Length = 282

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 103/282 (36%), Gaps = 53/282 (18%)

Query: 21  PKKYMGQNFLLDLNILKKIAE-SSGSLDGITV----------IEIGAGPGNLTQMLLTLG 69
            ++  GQNF             S+      T+          +EIGAG G +T++L + G
Sbjct: 22  ARREWGQNFF---RTAAAACRFSAQLDGSDTIPPDSPNDLMTVEIGAGSGRVTKVLASPG 78

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
              ++ +E D ++    + ++++    + ++ +D L            P+R+I NLP+  
Sbjct: 79  -TPLLAVEIDPRWA---RRLAAESLPDVTVVNEDFLT-----LQLPGQPVRLIGNLPFVT 129

Query: 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW--RTKATMM 187
           GTR+L   +  D  P        L Q+E        K +  +G       W         
Sbjct: 130 GTRMLRRCL--DMGPARMRQGVFLLQREYV-----GKRTGAWGGNLFNAQWEPWYSFDRG 182

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR-------------R 234
              S   F P P+  +  +   PH  P     E   K   + F +R             R
Sbjct: 183 LAFSRQDFTPVPRADTQTLMVAPHRRPSVPWRE---KAAYQRFVQRVFDTGQMTVGDAAR 239

Query: 235 KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
           K LR+     G    +  AG+    R ++L++ ++  +    
Sbjct: 240 KVLRR-----GHAQFVRGAGVRPADRVKDLTVPEWTALFRAY 276


>gi|93213580|gb|ABF02183.1| erythromycin-resistance protein [Streptococcus pyogenes]
          Length = 198

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +
Sbjct: 1   IKQLNLKENDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K   
Sbjct: 59  IHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
           +          +  L +L   +     +  +    F P PKV S +I    H   +P   
Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
             L       F    K + +  ++L  +N  HQA     
Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198


>gi|329314329|gb|AEB88742.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 191

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 15/189 (7%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I   +       VIEIG+G G+ T+ L+ + +R V  IE D     + 
Sbjct: 10  QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K+  +   N +++IQ D LK  F K  N     +I  N+PYNI T ++       T+   
Sbjct: 69  KEAVNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQ 119

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            +   L+ +K   +R+   +       L +L        M+  + P  F P P V S +I
Sbjct: 120 AKYSYLIVEKGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLI 174

Query: 207 HFIPHLNPI 215
               H   I
Sbjct: 175 VLERHQPLI 183


>gi|256964193|ref|ZP_05568364.1| rRNA methylase [Enterococcus faecalis HIP11704]
 gi|256954689|gb|EEU71321.1| rRNA methylase [Enterococcus faecalis HIP11704]
          Length = 171

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 15/180 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+      F      +I+ N+PY++ T+++   +     
Sbjct: 65  N-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHA 119

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
              +  +   F K   +          +  L +L   +     +  +    F P PKV S
Sbjct: 120 SDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNS 170


>gi|90762292|gb|ABD97884.1| erythromycin resistant protein [Streptococcus pyogenes]
          Length = 198

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +
Sbjct: 1   IKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K   
Sbjct: 59  IHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
           +          +  L +L   +     +  +    F P PKV S +I    H   +P   
Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
             L       F    K + +  ++L  +N  HQA     
Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198


>gi|89243240|gb|ABD64776.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|126693559|gb|ABO26569.1| ErmB [Streptococcus uberis]
          Length = 198

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +
Sbjct: 1   IKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTL 58

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K   
Sbjct: 59  IHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
           +          +  L +L   +     +  +    F P PKV S +I    H   +P   
Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
             L       F    K + +  ++L  +N  HQA     
Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198


>gi|71028132|ref|XP_763709.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350663|gb|EAN31426.1| hypothetical protein TP04_0074 [Theileria parva]
          Length = 285

 Score =  107 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 37/200 (18%)

Query: 107 VDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
           +D+++  N +   + II NLPY I +++L   +    +  + +   +  Q EV ER+ A 
Sbjct: 1   MDYKELSNRVGRKLWIIGNLPYYITSQILMCLLD---YRKYIDRAVITAQLEVAERLVAP 57

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES---- 221
             S HY  LSVL    T+  ++F +S HVF+P PKV S  I             ++    
Sbjct: 58  VGSKHYSMLSVLIQMFTRPKILFKLSNHVFYPKPKVQSACIKLEFTNTNTVNVRDTGDNT 117

Query: 222 ---------------LKKITQEAFGKRRKTLRQS-------LKRLGGENLLHQAGIETNL 259
                          L++I + +F K+RK LR S             EN+L        L
Sbjct: 118 TVGDDPGIRVSNMMLLREILRVSFNKKRKKLRSSLGSLLSKYNVKLPENVLE-------L 170

Query: 260 RAENLSIEDFCRITNILTDN 279
           R +NL+ E+F  +TN +  +
Sbjct: 171 RPQNLTPENFITLTNHIHKH 190


>gi|82698219|gb|ABB89115.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|91983298|gb|ABE68714.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|126583349|gb|ABO21677.1| ErmB [Streptococcus uberis]
          Length = 198

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +
Sbjct: 1   IKQLNLKENDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I  D L+      F      +I+ ++PY++ T+++   +        +  +   F K   
Sbjct: 59  IHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
           +          +  L +L   +     +  +    F P PKV S +I    H   +P   
Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
             L       F    K + +  ++L  +N  HQA     
Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198


>gi|2245604|gb|AAB62551.1| adenine N-6-methyltransferase [Enterococcus faecalis]
          Length = 219

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 86/233 (36%), Gaps = 26/233 (11%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +I  D 
Sbjct: 1   LKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTLIHQDI 58

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           L+      F      +I+ N+PY++ T+++   +        +  +   F K   +    
Sbjct: 59  LQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI--- 111

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224
                 +  L +L   +     +  +    F P PKV   +I    H   +P     L  
Sbjct: 112 ------HRTLGLLLHTQVSIQQLLKLPXECFHPKPKVNGVLIKLTRHTTDVPDKYWKL-- 163

Query: 225 ITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRITN 274
                F    K + +  ++L  +N  HQA         NLS    E    I N
Sbjct: 164 --YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTVTYEQVLSIFN 210


>gi|126693572|gb|ABO26571.1| ErmB [Streptococcus agalactiae]
          Length = 198

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +
Sbjct: 1   IKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I  D L+      F      +I+ ++PY++ T+++   +        +  +   F K   
Sbjct: 59  IHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTL 114

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
           +          +  L +L   +     +  +    F P PKV S +I    H   +P   
Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
             L       F    K + +  ++L  +N  HQA     
Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198


>gi|124365209|gb|ABN09636.1| ErmB [Streptococcus pyogenes]
          Length = 198

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +
Sbjct: 1   IKQLNLKETDTVFEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I  D L+      F      +I+ ++PY++ T+++   +        +  +   F K   
Sbjct: 59  IHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
           +          +  L +L   +     +  +    F P PKV S +I    H   +P   
Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
             L       F    K + +  ++L  +N  HQA     
Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198


>gi|114452120|gb|ABI75034.1| erythromycin resistance protein [uncultured bacterium]
          Length = 214

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 25/225 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           + KI  +    +   + EIG+G G+ T  L+      V  IE D +     ++    H N
Sbjct: 5   IDKIMTNISLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVNHDN 63

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
             +++  D L+  F K    +   +I  ++PYNI T ++   +    +    +   L+ +
Sbjct: 64  -FQVLNKDILQFKFPK----NQSYKIFGSIPYNISTDIIRKVV----FESIADESYLIVE 114

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
               +R+   K S     L++L       +++  +    F P PKV S++I      + I
Sbjct: 115 YGFAKRLLNTKRS-----LALLLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKKSRI 169

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL----LHQAGIE 256
               +         F    K + +  K++  +N     L  AGI+
Sbjct: 170 SYKDKQK----YNYFVM--KWVNKEYKKIFTKNQFNKSLKHAGID 208


>gi|81174759|gb|ABB58921.1| ErmA [Streptococcus pyogenes]
 gi|81174761|gb|ABB58922.1| ErmB [Streptococcus pyogenes]
 gi|82698215|gb|ABB89113.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|82698217|gb|ABB89114.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|124365205|gb|ABN09634.1| ErmB [Streptococcus pneumoniae]
 gi|124365211|gb|ABN09637.1| ErmB [Streptococcus pneumoniae]
 gi|126693546|gb|ABO26567.1| ErmB [Streptococcus agalactiae]
          Length = 198

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +
Sbjct: 1   IKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTL 58

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I  D L+      F      +I+ ++PY++ T+++   +        +  +   F K   
Sbjct: 59  IHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
           +          +  L +L   +     +  +    F P PKV S +I    H   +P   
Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
             L       F    K + +  ++L  +N  HQA     
Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198


>gi|126693566|gb|ABO26570.1| ErmB [Streptococcus uberis]
          Length = 191

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|307091914|gb|ADN28292.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 119

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D + L  I  ++    G +V+E+G G G +TQ LL  GA KV  +E D+   P+L+   
Sbjct: 1   VDEDALDAILGAAEIQPGESVVEVGPGAGVVTQRLLAAGA-KVTAVELDEALAPLLEKRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             +PN   ++Q D L    E      +P +++ANLPY I    L  ++     P     +
Sbjct: 60  GGNPN-FHLVQGDILHTPREDLLGADAPAKLVANLPYYITAPTLRYFLEHPPRPRRLVVM 118

Query: 151 T 151
            
Sbjct: 119 V 119


>gi|126583369|gb|ABO21678.1| ErmB [Streptococcus uberis]
          Length = 191

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +        TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLNLKKTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|90994360|gb|ABE03746.1| rRNA adenine N-6-methyltransferase [Streptococcus pyogenes]
          Length = 198

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 21/219 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +
Sbjct: 1   IKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTL 58

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I  D L+      F      +I+ ++PY++ T+++   +        +  +   F K   
Sbjct: 59  IHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTL 114

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
           +          +  L +L   +     +  +    F P PKV S +I    H   +P   
Sbjct: 115 DI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKY 165

Query: 220 ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
             L       F    K + +  ++L  +N  HQA     
Sbjct: 166 WKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK 198


>gi|307092022|gb|ADN28346.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307092026|gb|ADN28348.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307092028|gb|ADN28349.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307092044|gb|ADN28357.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I +++G      V+EIG G G LT++LL  G R+V+ IEKD +    L++  
Sbjct: 1   HDQNQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLVEFLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
               ++LE++  DAL+    +  + +   ++++NLPY++ + +L         P   
Sbjct: 60  QN--SKLELLHADALEFLKSEKRDWND-WKVVSNLPYSVASPILVELACGARAPKKI 113


>gi|307092054|gb|ADN28362.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I +++G      V+EIG G G LT++LL  G R+V+ IEKD +    L++  
Sbjct: 1   HDQNQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLAEFLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
               ++LE++  DAL+    +  + +   ++++NLPY++ + +L         P   
Sbjct: 60  QN--SKLELLHADALEFLKSEKRDWND-WKVVSNLPYSVASPILVELACGARAPKKI 113


>gi|157695030|gb|ABV66104.1| dimethyladenosine transferase [Rickettsiella melolonthae]
          Length = 119

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++ KI ++        +IEIG G G LT+ LL    + + VIE D+   P L+   +   
Sbjct: 5   VIDKILQAIAPHKTDHMIEIGPGLGALTERLLPHL-KSLTVIELDKDLIPFLQKKCAAL- 62

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
             L + Q D LK+DF          R++ NLPYNI T LLF+ +         + +  + 
Sbjct: 63  GELIVYQGDVLKIDFHTLSKTEQVWRLVGNLPYNISTPLLFHCLEQAN---IIQDMHFML 119


>gi|84000229|ref|NP_001033216.1| dimethyladenosine transferase 2, mitochondrial [Bos taurus]
 gi|122138757|sp|Q32LD4|TFB2M_BOVIN RecName: Full=Dimethyladenosine transferase 2, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 2;
           AltName: Full=Mitochondrial transcription factor B2;
           Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 2; Flags:
           Precursor
 gi|81673681|gb|AAI09635.1| Transcription factor B2, mitochondrial [Bos taurus]
 gi|296479265|gb|DAA21380.1| dimethyladenosine transferase 2, mitochondrial [Bos taurus]
          Length = 394

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 111/307 (36%), Gaps = 56/307 (18%)

Query: 29  FLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           ++    + + +          G  ++E   GPG LT+ LL  GAR VI +E D+ F P L
Sbjct: 74  YVTSPRVAETVVRVLRGKRKAGQLILECNPGPGVLTRALLESGAR-VIALESDKNFIPEL 132

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG---------------- 130
           K + +    RLE+I  D  K+D      ++ P+     L   +G                
Sbjct: 133 KSLGNSVNGRLEVIYCDFFKLDPRNHGMVTPPVMTSDMLFQYLGVKAHPWKKGFPLKVVG 192

Query: 131 -----------TRLLFNWISADTWPPFWE-SLTLLFQKEVGERITAQKNSPH-YGRLSVL 177
                       ++L +  S  +   +    L L   ++   ++TA   +P  Y  LSVL
Sbjct: 193 ILPAKTERNTLWKILHDLYSCSSVYKYGRAELNLFISEKECRKLTANPQTPALYQSLSVL 252

Query: 178 TGWRTKATMMFDISPHVFFPSPKVTS---------------TVIHFIPHLNPI-----PC 217
                   ++    P   F +  +                   +   PH N       P 
Sbjct: 253 GQTACGIKVLCT-EPSSLFDTYAIKGELEKQRHRESLEQNLCFVQLTPHRNLFTGTLTPF 311

Query: 218 CLESLKKITQEAFGKRRKTLRQ---SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274
             +    + ++ F KR   L     SL  +   ++L Q   + ++R  ++  +DF R+  
Sbjct: 312 NYDVFFHMLRQCFMKRNAKLIDHLPSLSPIDAVHILKQIKKKKDVRVVDMYPKDFLRLFE 371

Query: 275 ILTDNQD 281
            +  ++D
Sbjct: 372 TIECSKD 378


>gi|119571769|gb|EAW51384.1| dimethyladenosine transferase, isoform CRA_a [Homo sapiens]
          Length = 152

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 9/133 (6%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            ++    +GQ+ L +  I+  I + +       V+E+G G GN+T  LL   A+KV+  E
Sbjct: 27  GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACE 85

Query: 78  KDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            D +    L       P  ++L+++  D LK D   FF+       +ANLPY +    + 
Sbjct: 86  LDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTC-----VANLPYQVCYTYVS 139

Query: 136 NWISADTWPPFWE 148
             I   T    W 
Sbjct: 140 KRICPPTGCKTWR 152


>gi|126693577|gb|ABO26572.1| ErmB [Streptococcus agalactiae]
          Length = 191

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +        TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLNLKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|93213584|gb|ABF02185.1| erythromycin-resistance protein [Streptococcus pyogenes]
          Length = 191

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +        TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLNLKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|90103246|gb|ABD85468.1| erythromycin resistance methylase [Streptococcus pneumoniae]
          Length = 191

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLNFKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|90660160|gb|ABD97341.1| erythromycin resistance protein [Streptococcus pneumoniae]
          Length = 191

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 80/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ ++PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|67974731|gb|AAY84558.1| erythromycin resistance methylase [Helcococcus kunzii]
          Length = 176

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 15/187 (8%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I + +       +IEIG+G G+ T+ L+ +  R V  IE D+      
Sbjct: 4   QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 62

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K       N +++I +D LK  F K  +     +I  N+PYNI T ++        +   
Sbjct: 63  KKAVEPFQN-IKVIHEDILKFSFPKNTD----YKIFGNIPYNISTDIVKKI----AFDSQ 113

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            +   L+ ++   +R+   +       L +L        ++  +    F P P V S +I
Sbjct: 114 AKYSYLIVERGFAKRLQNTQR-----ALGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 168

Query: 207 HFIPHLN 213
               H  
Sbjct: 169 VLERHKP 175


>gi|124365213|gb|ABN09638.1| ErmB [Streptococcus pyogenes]
          Length = 191

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +        TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLNLKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|93213586|gb|ABF02186.1| erythromycin-resistance protein [Streptococcus pyogenes]
 gi|126693553|gb|ABO26568.1| ErmB [Streptococcus agalactiae]
          Length = 191

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +        TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLDLKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|325120060|emb|CBZ55612.1| putative dimethyladenosine synthase [Neospora caninum Liverpool]
          Length = 195

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 12/135 (8%)

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-- 213
           +   +R+TA+     Y RLSV+        ++  +   VF+P PKV + ++H        
Sbjct: 19  RPFLQRLTARPGERQYSRLSVVFALYGSCRIVKKLPSSVFYPVPKVDAALVHIAFRQASL 78

Query: 214 ---PIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIE---TNLRAENLSIE 267
                       + +   AFG+RRK LR SLK +      H A +     +LR + LS E
Sbjct: 79  REILRGADPHQFRTVLHAAFGQRRKMLRSSLKPILP----HPAALPEHFASLRPQQLSPE 134

Query: 268 DFCRITNILTDNQDI 282
           DF  +TN +  + D 
Sbjct: 135 DFLDLTNAIFSSPDA 149


>gi|93213582|gb|ABF02184.1| erythromycin-resistance protein [Streptococcus pyogenes]
          Length = 191

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +        TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQFDLKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|307092010|gb|ADN28340.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I +++G      V+EIG G G LT++LL   A +V+ IEKD +    L+   
Sbjct: 1   HDQNQLRRIVDAAGLSANDKVLEIGPGLGPLTEILLE-KANEVLAIEKDTRLVEFLRGHF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
                +L++   DAL     +  + S   ++++NLPY++ + +L         P   
Sbjct: 60  QN--PKLQLHHADALDFLKSEGHDWSD-WKVVSNLPYSVASPILVELACGARAPEKI 113


>gi|307092024|gb|ADN28347.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307092058|gb|ADN28364.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 4/114 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I  ++       V+EIG G G LT++LL   A +V+ IE D +    L++  
Sbjct: 1   HDQNQLRRIVAAAELTPADKVLEIGPGLGPLTELLLE-NAGEVLAIEMDGRLVEYLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           S    RLE++  DALK+   +  + S   +++ANLPY++ + +L     +   P
Sbjct: 60  SN--PRLELLHADALKILRHEPRDWSD-WKLVANLPYSVASPILVELAQSPQRP 110


>gi|332236391|ref|XP_003267387.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Nomascus
           leucogenys]
          Length = 396

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 117/327 (35%), Gaps = 63/327 (19%)

Query: 14  LSHYKIIPKKYMGQNFLLDLN---ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
            S  K+  K+Y     + D      L +I     +     ++E   GPG LTQ LL  GA
Sbjct: 64  ASKSKLDFKRY-----VTDRRLAETLAQIVWGKPNRPPHLLLECNPGPGILTQALLEAGA 118

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            KV+ +E D+ F P L+ +      +L +I  D  K+D      I  P      L  N+G
Sbjct: 119 -KVVALESDKTFIPHLESLGRNLDGKLRVIHCDFFKIDPRSGGLIKPPAMSSRGLFKNLG 177

Query: 131 ---------------------------TRLLFNWISADTWPPF--WESLTLLFQKEVGER 161
                                       +L ++  S  +   F   E    + +KE  + 
Sbjct: 178 IEAVPWTADIPLKVIGMFPSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKL 237

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMM-------FDI---SPHVFFPSPKVTST------- 204
           +   +N   Y  LSV+     +  ++       FD+      +  P  +           
Sbjct: 238 MADPRNPDLYHVLSVIWQVACEIKVLHMEPWSSFDVYTRKGRLENPKRRELLDLLQQKLY 297

Query: 205 VIHFIPHLNPI-----PCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIE 256
           +I   P  N       P        + +  FG+R  T+    +SL  L   ++L Q G +
Sbjct: 298 LIQMTPRQNLFAKSLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKK 357

Query: 257 TNLRAENLSIEDFCRITNILTDNQDIA 283
            + +  N+  +DF  +   +  ++D A
Sbjct: 358 EDEKVVNMYPQDFKTLFETIECSKDCA 384


>gi|11641289|ref|NP_071761.1| dimethyladenosine transferase 2, mitochondrial [Homo sapiens]
 gi|74752681|sp|Q9H5Q4|TFB2M_HUMAN RecName: Full=Dimethyladenosine transferase 2, mitochondrial;
           AltName: Full=Hepatitis C virus NS5A-transactivated
           protein 5; Short=HCV NS5A-transactivated protein 5;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 2;
           AltName: Full=Mitochondrial transcription factor B2;
           Short=h-mtTFB; Short=h-mtTFB2; Short=hTFB2M;
           Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 2; Flags:
           Precursor
 gi|10439783|dbj|BAB15566.1| unnamed protein product [Homo sapiens]
 gi|13097249|gb|AAH03383.1| Transcription factor B2, mitochondrial [Homo sapiens]
 gi|33328300|gb|AAQ09600.1| NS5ATP5 [Homo sapiens]
 gi|55959218|emb|CAI16399.1| transcription factor B2, mitochondrial [Homo sapiens]
 gi|119597558|gb|EAW77152.1| transcription factor B2, mitochondrial, isoform CRA_d [Homo
           sapiens]
 gi|167773225|gb|ABZ92047.1| transcription factor B2, mitochondrial [synthetic construct]
 gi|261858246|dbj|BAI45645.1| transcription factor B2, mitochondrial [synthetic construct]
          Length = 396

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 103/292 (35%), Gaps = 55/292 (18%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
                ++E   GPG LTQ LL  GA KV+ +E D+ F P L+ +      +L +I  D  
Sbjct: 94  RPPHLLLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLESLGKNLDGKLRVIHCDFF 152

Query: 106 KVDFEKFFNISSPIRIIANLPYNIG---------------------------TRLLFNWI 138
           K+D      I  P      L  N+G                            +L ++  
Sbjct: 153 KLDPRSGGVIKPPAMSSRGLFKNLGIEAVPWTADIPLKVVGMFPSRGEKRALWKLAYDLY 212

Query: 139 SADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM-------FD 189
           S  +   F   E    + +KE  + +    N   Y  LSV+     +  ++       FD
Sbjct: 213 SCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLYHVLSVIWQLACEIKVLHMEPWSSFD 272

Query: 190 I-----SPHVFFPSPKVTS-----TVIHFIPHLNPI-----PCCLESLKKITQEAFGKRR 234
           I               +        +I  IP  N       P        + +  FG+R 
Sbjct: 273 IYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNLFTKNLTPMNYNIFFHLLKHCFGRRS 332

Query: 235 KTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            T+    +SL  L   ++L Q G + + +  N+  +DF  +   +  ++D A
Sbjct: 333 ATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHPQDFKTLFETIERSKDCA 384


>gi|307069663|ref|YP_003878140.1| putative dimethyladenosine transferase [Candidatus Zinderia
           insecticola CARI]
 gi|306482923|gb|ADM89794.1| putative dimethyladenosine transferase [Candidatus Zinderia
           insecticola CARI]
          Length = 254

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 10/164 (6%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
             ++EIG G GNLT+ L+      +  IE D++ +   K++  ++ N++ +   + LK +
Sbjct: 32  DFILEIGFGNGNLTKYLIKYKI-FLFAIEIDKKLY---KNLKIKYKNKINLFNYNILKFN 87

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
            + F   +   RII NLPYNI  +++  +I    +    + + ++ QKE  ++I A   +
Sbjct: 88  IKIF---NKKFRIIGNLPYNISKKIILYFIK---FYKNIKDIYVMLQKEFVKKINANYGN 141

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
             + ++S+LT  +    ++ +IS   F+P PKV S  I  IP  
Sbjct: 142 KKFSKISILTQIKFNIIILLNISKKNFYPIPKVNSYFIKMIPKK 185


>gi|124365207|gb|ABN09635.1| ErmB [Streptococcus pyogenes]
          Length = 191

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 78/212 (36%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +         V EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLNLRRTDAVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|55590166|ref|XP_514318.1| PREDICTED: transcription factor B2, mitochondrial isoform 2 [Pan
           troglodytes]
 gi|114573580|ref|XP_001139400.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial isoform 1
           [Pan troglodytes]
          Length = 393

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 102/292 (34%), Gaps = 55/292 (18%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
                ++E   GPG LTQ LL  GA KV+ +E D+ F P L+ +      +L +I  D  
Sbjct: 91  RPPHLLLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLESLGKNLDGKLRVIHCDFF 149

Query: 106 KVDFEKFFNISSPIRIIANLPYNIG---------------------------TRLLFNWI 138
           K+D      I  P      L  N+G                            +L ++  
Sbjct: 150 KLDPRSGGVIKPPAMSSRGLFKNLGIEAVPWTADIPLKVIGMFPSRGEKRALWKLAYDLY 209

Query: 139 SADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM-------FD 189
           S  +   F   E    + +KE  + +    N   Y  LSV+     +  ++       FD
Sbjct: 210 SCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLYHVLSVIWQLACEIKVLHMEPWSSFD 269

Query: 190 I-----SPHVFFPSPKVTS-----TVIHFIPHLNPI-----PCCLESLKKITQEAFGKRR 234
           I               +        +I   P  N       P        + +  FG+R 
Sbjct: 270 IYTRKGPLENPKRRELLDQLQQKLYLIQMTPRQNLFTKNLTPMNYNIFFHLLKHCFGRRS 329

Query: 235 KTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
            T+    +SL  L   ++L Q G + + +  N+  +DF  +   +  ++D A
Sbjct: 330 ATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHPQDFKTLFETIERSKDCA 381


>gi|155965924|gb|ABU40944.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 193

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 23/215 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +K+I   +       VIEIG+G G+ T+ L+ + +R V  IE D+    + K+  +   N
Sbjct: 1   VKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDEGLCQVTKEAVNPSEN 59

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            +++IQ D LK  F K  N     +I  N+PYNI T ++       T+    +   L+ +
Sbjct: 60  -IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQAKYSYLIVE 110

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           K   +R+   +       L +L        M+  + P  F P P V S +I    H   I
Sbjct: 111 KGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLI 165

Query: 216 -PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
                +  +           K + +  + L  +N 
Sbjct: 166 SKKDYKKYRSFVY-------KWVNREYRVLFTKNQ 193


>gi|307092040|gb|ADN28355.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D   L++I +++G      V+EIG G G LT++LL  G R+V+ IEKD +    L++  
Sbjct: 1   HDQTQLRRIVDAAGLSQTDKVLEIGPGLGPLTELLLENG-REVLAIEKDARLVEFLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
               ++LE++  DAL+    +  + +   ++++NLPY++ + +L         P   
Sbjct: 60  QN--SKLELLHADALEFLKSEKRDWND-WKVVSNLPYSVASPILVELACGARAPKKI 113


>gi|34147928|gb|AAQ62542.1| erythromycin resistance methylase [Streptococcus sp. 'group G']
          Length = 184

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 15/187 (8%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF+     +K+I + +       +IEIG+G G+ T+ L+ +  R V  IE D+      
Sbjct: 10  QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLCHAT 68

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           K       N +++I +D LK  F K  +     +I  ++PYNI T ++        +   
Sbjct: 69  KKAVEPFQN-IKVIHEDILKFSFPKNTD----YKIFGSIPYNISTDIVKKI----AFDSQ 119

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
            +   L+ ++   +R+   +       L +L        ++  +    F P P V S +I
Sbjct: 120 AKYSYLIVERGFAKRLQNTQR-----ALGLLLMVEMDIKILKKVPRAYFHPKPNVDSVLI 174

Query: 207 HFIPHLN 213
               H  
Sbjct: 175 VLERHKP 181


>gi|149748941|ref|XP_001490604.1| PREDICTED: similar to transcription factor B2, mitochondrial [Equus
           caballus]
          Length = 398

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 118/326 (36%), Gaps = 63/326 (19%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT---VIEIGAGPGNLTQMLLTLGA 70
           ++  ++ P++Y     +    + + + +        T    +E   GPG LTQ LL  GA
Sbjct: 64  VTKCRLEPRRY-----ITSPRLAETLVQVLRGGREKTCQLFLECNPGPGILTQALLENGA 118

Query: 71  RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           R VI +E D+ F P L+ +      +LE++  D  K+D      +  PI +   L  N+G
Sbjct: 119 R-VIALESDRTFIPHLESLGKNLNGKLEVVHCDFFKLDPTNCGTVKPPIMVSKMLFQNLG 177

Query: 131 ---------------------------TRLLFNWISADTWPPFWESLTLLF--QKEVGER 161
                                       +LL +  S  +   +      +F  +K+  + 
Sbjct: 178 IQALPWSKGIPLKVIGIFPIKNERKTLWKLLHDLYSCTSIYRYGRVELNMFISEKQYQKL 237

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMM-------FDI---SPHVFFPS--PKVTS-----T 204
           +   KN   Y  LSVL     +  ++       FDI   +  +  P     +        
Sbjct: 238 MANPKNPNLYQALSVLWQVACEIKLLHMEPWSSFDIYTQNGQLEKPKRRESLEELQQNLC 297

Query: 205 VIHFIPHL-----NPIPCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIE 256
           +I   P       N  P   +    + ++ F KR   L     SL  +   ++L +   +
Sbjct: 298 LIQLTPRRTLFTENLTPINYDVFFHMLKQCFMKRNAKLIDHLHSLSPVDAMDILKKIKKK 357

Query: 257 TNLRAENLSIEDFCRITNILTDNQDI 282
              +  NL   DF ++   +  ++D 
Sbjct: 358 EKTKITNLYPRDFKQLFETIECSKDY 383


>gi|218473458|emb|CAV31168.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 211

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 26/225 (11%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +I  D L+      
Sbjct: 1   EIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ---- 54

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           F      +I+ N+PY++ T+++   +        +  +   F K   +          + 
Sbjct: 55  FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---------HR 105

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232
            L +L   +     +  +    F P PKV S +I    H   +P     L       F  
Sbjct: 106 TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV- 160

Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRITN 274
             K + +  ++L  +N  HQA         NLS    E    I N
Sbjct: 161 -SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTITYEQVLSIFN 202


>gi|307092048|gb|ADN28359.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I +++G      V+EIG G G LT++L   G R+V+ IEKD +    L++  
Sbjct: 1   HDQNQLRRIVDAAGLPQTDKVLEIGPGLGPLTELLPENG-REVLAIEKDARLVEFLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
               ++LE++  DAL+    +  + +   ++++NLPY++ + +L         P   
Sbjct: 60  QN--SKLELLHADALEFLKSEKRDWND-WKVVSNLPYSVASPILVELACGARAPKKI 113


>gi|330835850|ref|YP_004410578.1| dimethyladenosine transferase [Metallosphaera cuprina Ar-4]
 gi|329567989|gb|AEB96094.1| dimethyladenosine transferase [Metallosphaera cuprina Ar-4]
          Length = 217

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 35/218 (16%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
             QNFL+D ++++KI  S        +IEIG G GNL+++         + IE DQ+   
Sbjct: 3   YSQNFLVDKDVIRKI--SDNISTERPLIEIGCGKGNLSEV-----VSPDLCIEIDQRLLS 55

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            LK+ +         IQ DA K+   +        +II++LPY+I        I  +   
Sbjct: 56  FLKNYNP--------IQGDARKLPVLR-------GQIISSLPYSITYDFFMEIIKIN--- 97

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
                L L+ Q++   ++           +S +  +  +   +F I P  F P+P++ S 
Sbjct: 98  -GISRLLLILQEDFVNKVIDYP-----TFISFILNYYFEINKLFVIPPSSFRPAPRIFSA 151

Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242
           ++             + +  I++     R K+L    K
Sbjct: 152 LVSLKRSRQYDQKVTDVIACISK----YRNKSLNNIAK 185


>gi|89242975|gb|ABD64743.1| erythromycin resistance protein [Streptococcus pyogenes]
          Length = 191

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +        TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLNFKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ ++PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|124365203|gb|ABN09633.1| ErmB [Streptococcus pyogenes]
          Length = 191

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +        TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKHGNFKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ ++PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|89242973|gb|ABD64742.1| erythromycin resistance protein [Streptococcus pyogenes]
 gi|89243237|gb|ABD64775.1| erythromycin resistance protein [Streptococcus pyogenes]
          Length = 191

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +        TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKHLILKRTDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|90103248|gb|ABD85469.1| erythromycin resistance methylase [Streptococcus pyogenes]
          Length = 191

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 80/212 (37%), Gaps = 21/212 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +     +  TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ 
Sbjct: 1   IIKQLILKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVT 58

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D L+      F      +I+ ++PY++ T+++   +        +  +   F K  
Sbjct: 59  LIHQDILQFQ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRT 114

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            +          +  L +L   +     +  +    F P PKV S +I    H   +P  
Sbjct: 115 LDI---------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDK 165

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGGENLL 250
              L       F    K + +  ++L  +N  
Sbjct: 166 YWKL----YTYFV--SKWVNREYRQLFTKNQF 191


>gi|86604368|gb|ABD13962.1| erythromycin resistance protein [Shuttle vector pBK638]
 gi|112941720|gb|ABI26288.1| ermAM [Promoter reporter vector pBKGT]
 gi|112941749|gb|ABI26293.1| ErmAM [Promoter rescue vector pBK]
          Length = 207

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 81/254 (31%), Gaps = 64/254 (25%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L     +   R+ +I  D L+  F                                  
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQF---------------------------------- 89

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
            P  +  TL   +                 L +L   +     +  +    F P PKV S
Sbjct: 90  -PNKQRCTLDIHRT----------------LGLLLHTQVSIQQLLKLPAECFHPKPKVNS 132

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
            +I    H   +P     L       F    K + +  ++L  +N  HQA         N
Sbjct: 133 VLIKLTRHTTDVPDKYWKL----YTYFV--SKWVNREYRQLFTKNQFHQAMKHAK--VNN 184

Query: 264 LSI---EDFCRITN 274
           LS    E    I N
Sbjct: 185 LSTVTYEQVLSIFN 198


>gi|325123520|gb|ADY83043.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
           kasugamycin resistance [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 91

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 191 SPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
               F P PKVTS V   +P+          ++L ++    F +RRKTLR SLK +  E+
Sbjct: 2   PAGAFNPPPKVTSAVFRLVPYDQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMIAED 61

Query: 249 LLHQAGIETNLRAENLSIEDFCRITN 274
              +AG++   R E L++  F  + +
Sbjct: 62  GFEKAGVDPMARPETLTLAQFVALAD 87


>gi|156365624|ref|XP_001626744.1| predicted protein [Nematostella vectensis]
 gi|156213632|gb|EDO34644.1| predicted protein [Nematostella vectensis]
          Length = 368

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 118/315 (37%), Gaps = 53/315 (16%)

Query: 9   SLKTILSHYKIIPKKYMGQNF--LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           S  T++  Y + P+ Y  +N+  + D ++ +++A+      G  VIE   GPG LT+ ++
Sbjct: 34  SRATLIEKYNLKPRSYTVKNYKYITDRDLAERVAKVLNVQ-GHCVIEASPGPGMLTRAMI 92

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             GA++VI +E D+ F   L+ + S+   +   +  D  K+D     + S     I   P
Sbjct: 93  DSGAKQVIGLEPDKIFMEDLRSLQSETNGKFTPLFGDFGKIDPHLVHDESDTKARICRAP 152

Query: 127 YNIGTRLLFNWISADTWPP---------------------------------------FW 147
             I ++ LF  IS   W                                           
Sbjct: 153 -AIASKDLFKGISPVEWESDETPVKFVGIEGGKTLASTTKILMSYLARVPGKESIFKIGR 211

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP----SPKVTS 203
             L   +  +  ER+ AQ  + +Y RLS++        ++      +F P      K   
Sbjct: 212 CELLFFYTHDRAERLLAQPGTKYYNRLSIMASLFCDVNVIHREPCQMFDPYFRKDGKKEL 271

Query: 204 TVIHFIPHLNPIPCCLESLKKIT----QEAFGKRRKTLRQSLKRL--GGENLLHQAGIET 257
            +I  +P         E    +     +    K +++L  SL  +  G   +L   G+  
Sbjct: 272 QLISIVPKKRLDFSIPEDCLHLVGYFIRILMIKPKQSLATSLDGISPGSHVILDNLGLPH 331

Query: 258 NLRAENLSIEDFCRI 272
           + RA +L  + + R+
Sbjct: 332 DTRASDLVPKMYGRL 346


>gi|307092008|gb|ADN28339.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 113

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 8/121 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  I+ +I E+S  + G TV+EIG G G LTQ L+  GA KVI +E D    P L++  
Sbjct: 1   TDEGIVAEIIEASAIVKGETVLEIGPGTGVLTQALVEAGA-KVIAVEADPDLIPALEETF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
               +R+E+++ D L+ +      +    +++AN+PYNI + +L   ++ D+ P     +
Sbjct: 60  G---DRIELVESDVLETN----LKLPKLFKLVANIPYNITSDVLHRSLTGDSRPTRLVLM 112

Query: 151 T 151
            
Sbjct: 113 V 113


>gi|290561427|gb|ADD38114.1| Probable dimethyladenosine transferase [Lepeophtheirus salmonis]
          Length = 186

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKK 224
                 Y RLS+ T   +    +  +  + F P PKV S+V+   P   P P   +    
Sbjct: 39  PPGDKLYCRLSINTQLLSTVHHLLKVGKNNFRPPPKVESSVVRIEPKNPPPPINFKEWDG 98

Query: 225 ITQEAFGKRRKTLRQSLKRLGGENLLHQ-----AGIETNLRAENLSIEDFC 270
           +T+  F ++ KTL  +  +      L +       ++  +  E  SI++  
Sbjct: 99  LTRICFVRKNKTLGAAFSQTPVLLTLDKNYRTHMSLKEEMLPEEFSIKELI 149


>gi|307091920|gb|ADN28295.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 122

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +   IL +I E++      TV E+G G G +T  LL    R VI +E D+     L++  
Sbjct: 1   ISNEILDRIVEAADLSPSSTVAEVGPGLGVVTTELLQRTGR-VIAVEIDENLCRHLEERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISS---PIRIIANLPYNIGTRLLFNWISADTWPPFW 147
               N L ++ +D LK+   +  +      P  ++ NLPY I   +L +++ +D  PP  
Sbjct: 60  GDREN-LNLVCNDILKISPREILDAGDAEQPYTLVGNLPYYITAPILRHFLESDCQPPHL 118

Query: 148 ESL 150
             +
Sbjct: 119 VIM 121


>gi|307091992|gb|ADN28331.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I  ++   D   V+EI  G G LT++LL   AR V+ IEKD++    L++  
Sbjct: 1   HDANQLRRIVAAAELTDDDRVLEISPGLGPLTEVLLAKVAR-VLAIEKDRRLIEFLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
            +    LE++ DDAL+    +  + S    +++NLPY++ + +L     A+  P  
Sbjct: 60  -RAGGNLELLHDDALRYLRAQDSDWSD-WTVVSNLPYSVASPILVELAQAEKGPRR 113


>gi|73960781|ref|XP_537224.2| PREDICTED: similar to transcription factor B2, mitochondrial
           isoform 1 [Canis familiaris]
          Length = 401

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 109/302 (36%), Gaps = 61/302 (20%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            L  I E+        ++E   GPG LT+ LL   A KVI +E ++ F P L+ +  +  
Sbjct: 83  TLAHILENERKTPDKLLLECNPGPGILTEALLKSKA-KVIALESNRNFLPHLQSLRKKVD 141

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----------------------- 131
             LE+I  D  K+D   F  +  PI I   L  ++G                        
Sbjct: 142 GELEVIYCDFFKMDPRNFGIVKPPIMISETLFQHLGIAAVPWSEDTPLRVVGIFPAKNEK 201

Query: 132 RLLFNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH-YGRLSVLTGWRTKAT 185
           ++L+  +     S   +      L +   +   E++ A   +PH Y  LSVL     K  
Sbjct: 202 KILWKLLYDLYSSTSVYSYGRVQLNMFITEREYEKLVASPETPHLYQVLSVLWQVACKIK 261

Query: 186 MMFDISPHVFF----------------PSPKVTS------TVIHFIPHLNPIP-----CC 218
           ++  + P   F                P  ++         +I   PH N          
Sbjct: 262 LL-HVEPWSSFGVYGQRGRLDDLKNKKPLEQINKHEGQNMCLIQLTPHQNLFTENLTSIN 320

Query: 219 LESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
            +    + ++ F KR   L    Q L  +    +L Q G + +++  +L  +DF ++   
Sbjct: 321 YDVFFLMLKQCFMKRNFKLMDHLQLLSPVNAAAILKQIGKDGDMKITDLYPQDFKQLFEA 380

Query: 276 LT 277
           + 
Sbjct: 381 IE 382


>gi|307091950|gb|ADN28310.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 119

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D N+ +KIA+S        V+EIG G G LT+ L     R+++++E D +    L +  
Sbjct: 1   IDPNLQRKIADSIAPTADDEVLEIGPGRGALTRHLAPR-VRRLVLVELDNELARRLIEEY 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +   + + ++    L +  E   +  + +++I N+PYNI T ++F+ +     P     +
Sbjct: 60  AS-DDAVHVVHGSVLDIALEDVSSDPARLKVIGNIPYNITTPIIFHLLEHRPRPAQIVLM 118

Query: 151 T 151
            
Sbjct: 119 V 119


>gi|307092064|gb|ADN28367.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score =  101 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 4/114 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I  ++       V+EIG G G LT++LL   A +V+ IE D +    L++  
Sbjct: 1   HDQNQLRRIVAAAELTPADKVLEIGPGLGPLTELLLE-NAGEVLAIEMDGRLVEYLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
                RLE++  DALK+      + S   +++ANLPY++ + +L     +   P
Sbjct: 60  PN--PRLELLHADALKILRHVPRDWSD-WKLVANLPYSVASPILVELAQSPQRP 110


>gi|15920668|ref|NP_376337.1| dimethyladenosine transferase [Sulfolobus tokodaii str. 7]
 gi|15621451|dbj|BAB65446.1| 220aa long hypothetical rRNA adenine N-6-methyltransferase
           [Sulfolobus tokodaii str. 7]
          Length = 220

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 101/253 (39%), Gaps = 39/253 (15%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +GQ+FL++   +K+            +IEIG G GN+T+ +     +  +VIE D++F  
Sbjct: 3   LGQHFLVNEETIKRFVSYVDLS-FRPIIEIGGGKGNITKYI-----KPDVVIEIDKRFSS 56

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            L+++       L +I+                  +I+++LPY I        I  D   
Sbjct: 57  YLRNLVIADARFLPVIRG-----------------QIVSSLPYYITYEFFEEIIRIDQ-- 97

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
              + L L+ Q +  ++I  +        +S +  +  K  +  +I P  F P P+V ST
Sbjct: 98  --IKKLILILQYDFVKKILNEP-----TYISFILNYYYKIDVKENIPPWFFKPKPRVYST 150

Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENL 264
           ++ F           E +  I +     R K +  ++K     + L     + N R  + 
Sbjct: 151 IVLFTRIR----SYDEKINLILKCISKYRNKKITNAVKLCNLSSSLST---DINKRVRDF 203

Query: 265 SIEDFCRITNILT 277
                  + NI++
Sbjct: 204 KPCQVLELLNIIS 216


>gi|155965922|gb|ABU40943.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 208

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 25/222 (11%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL     +K+I   +       VIEIG+G G+ T+ L+ + +R V  IE D+    + + 
Sbjct: 1   FLK--KAVKEILNHTNINKQDNVIEIGSGKGHFTKELVKM-SRWVDSIEIDEDLCQVTQK 57

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           +     N +++I  D LK +F K    +   +I  N+P+NI T ++            + 
Sbjct: 58  VVKPFQN-IKVIHTDILKFNFPK----NKDYKIFGNIPFNISTDIVKKIAFESNSKYSYL 112

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
                    + E   A++       L +L        ++  +    F P P V S +I  
Sbjct: 113 ---------IVENGFAKRLQNTKRALGLLLMVELDIRVLKKVPRAYFHPKPNVDSVLIVL 163

Query: 209 IPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
             H   I     +  +           K + +  + L  +N 
Sbjct: 164 ERHQPLILKKDYKEYQSFVY-------KWVNREYRVLFTKNQ 198


>gi|258545948|ref|ZP_05706182.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826]
 gi|258518826|gb|EEV87685.1| dimethyladenosine transferase [Cardiobacterium hominis ATCC 15826]
          Length = 248

 Score = 99.9 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +   K++GQ+FL D  ++ ++     +  G  ++EIG G G LT  LL      +  +E 
Sbjct: 4   VKAAKHLGQHFLRDEAVIARLLAVINAKAGERILEIGPGLGALTLPLL-RQTGAMTAVEY 62

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           D +    L   ++     L +I  D L +DF +      P  +
Sbjct: 63  DPRVLAPLAKKAATL-GTLHLIHADILTIDFGELLAKQPPPPV 104


>gi|307091942|gb|ADN28306.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 99.9 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 4/114 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I ++    DG  ++EIG G G LT +LL   A++V+ +EKD +    L+   
Sbjct: 1   HDHNQLQRIVQAGDVKDGDLILEIGPGLGPLTSLLLGH-AKRVLAVEKDPRLVTFLRKKF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            +  N LE++  DAL+       +  +  ++I+NLPY++G+ +L +  +    P
Sbjct: 60  EKEAN-LELVHADALEYLRAP--HDWTNWKMISNLPYSVGSPILVDLANTAKPP 110


>gi|307091956|gb|ADN28313.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L +I           ++EIG G G LT++LLT GA KV  IEKD++    L+D  
Sbjct: 1   HDANQLARIVALGELSTRDNILEIGPGLGPLTELLLTSGA-KVFAIEKDRRLIDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           +  PN  E++QDDAL    EK  + +   ++I+NLPY++ + +L   ++  + PP
Sbjct: 60  APFPN-FELLQDDALAYLKEKDRDWTD-WKLISNLPYSVASPILVE-LALGSHPP 111


>gi|164653711|gb|ABY65241.1| erythromycin resistance methylase [Streptococcus suis]
 gi|164653713|gb|ABY65242.1| erythromycin resistance methylase [Streptococcus suis D9]
          Length = 198

 Score = 99.5 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 23/212 (10%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
             VIEIG+G G+ T+ L+ + +R V  IE D+    + + +     N +++I  D LK +
Sbjct: 1   DNVIEIGSGKGHFTKELVKM-SRWVDSIEIDEDLCQVTQKVVKPFQN-IKVIHTDILKFN 58

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
           F K    +   +I  N+P+NI T ++            +          + E   A++  
Sbjct: 59  FPK----NKDYKIFGNIPFNISTDIVKKIAFESNSKYSYL---------IVENGFAKRLQ 105

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQ 227
                L +L        ++  +    F P P V S +I    H   I     +  +    
Sbjct: 106 NTKRALGLLLMVELDIRVLKKVPRAYFHPKPNVDSVLIVLERHQPLILKKDYKEYQSFVY 165

Query: 228 EAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
                  K + +  + L  +N   QA    N+
Sbjct: 166 -------KWVNREYRVLFTKNQFRQALKHANV 190


>gi|193871|gb|AAA37817.1| house-keeping protein [Mus musculus]
          Length = 396

 Score = 99.5 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 106/303 (34%), Gaps = 57/303 (18%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N+++ + E         ++E   GPG LT  LL  GAR V+  E ++ F P L+ +   
Sbjct: 81  RNLVRDLLEHQNPSR-QIILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRN 138

Query: 93  HPNRLEIIQDDALKVDFEKF----------------------FNISSPIRIIANLPYN-- 128
               L+++  D  K+D                          ++   PI++   LPY   
Sbjct: 139 MDGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHE 198

Query: 129 --IGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
             I  ++LF+  S ++   +      +F  +KE  + I   K    Y  ++VL       
Sbjct: 199 RRILWKILFDLYSCESIYRYGRVELNMFVSEKEFRKLIATPKRPDLYQVMAVLWQVACDV 258

Query: 185 TMM-------FDISPHVFFP-SPKVTSTV---------IHFIPHL-----NPIPCCLESL 222
             +       F +          K   +V         +   P       N  P   +  
Sbjct: 259 KFLHMEPWSSFSVHMENGHLEKSKHGESVNLLKQNLYLVRMTPRRTLFTENLSPLNYDIF 318

Query: 223 KKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             + +  FGKR     + LR SL  +   N+L Q        A  +   DF ++   +  
Sbjct: 319 FHLVKHCFGKRNAPIIRHLR-SLSTVDPINILRQIRKNPGDTAARMYPHDFKKLFETIEQ 377

Query: 279 NQD 281
           ++D
Sbjct: 378 SED 380


>gi|84490373|ref|NP_032275.2| dimethyladenosine transferase 2, mitochondrial [Mus musculus]
 gi|123796604|sp|Q3TL26|TFB2M_MOUSE RecName: Full=Dimethyladenosine transferase 2, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 2;
           AltName: Full=Mitochondrial transcription factor B2;
           Short=mTFB2M; Short=mtTFB2; AltName:
           Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase 2; Flags: Precursor
 gi|74138927|dbj|BAE27262.1| unnamed protein product [Mus musculus]
 gi|74139560|dbj|BAE40917.1| unnamed protein product [Mus musculus]
 gi|74177744|dbj|BAE38967.1| unnamed protein product [Mus musculus]
 gi|74204361|dbj|BAE39934.1| unnamed protein product [Mus musculus]
 gi|74223284|dbj|BAE40774.1| unnamed protein product [Mus musculus]
 gi|148681221|gb|EDL13168.1| transcription factor B2, mitochondrial [Mus musculus]
 gi|187953023|gb|AAI38837.1| Transcription factor B2, mitochondrial [Mus musculus]
 gi|187954085|gb|AAI38838.1| Transcription factor B2, mitochondrial [Mus musculus]
          Length = 396

 Score = 98.7 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 106/303 (34%), Gaps = 57/303 (18%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N+++ + E         ++E   GPG LT  LL  GAR V+  E ++ F P L+ +   
Sbjct: 81  RNLVRDLLEHQNPSR-QIILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRN 138

Query: 93  HPNRLEIIQDDALKVDFEKF----------------------FNISSPIRIIANLPYN-- 128
               L+++  D  K+D                          ++   PI++   LPY   
Sbjct: 139 MDGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHE 198

Query: 129 --IGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
             I  ++LF+  S ++   +      +F  +KE  + I   K    Y  ++VL       
Sbjct: 199 RRILWKILFDLYSCESIYRYGRVELNMFVSEKEFRKLIATPKRPDLYQVMAVLWQVACDV 258

Query: 185 TMM-------FDISPHVFFP-SPKVTSTV---------IHFIPHL-----NPIPCCLESL 222
             +       F +          K   +V         +   P       N  P   +  
Sbjct: 259 KFLHMEPWSSFSVHTENGHLEKSKHGESVNLLKQNLYLVRMTPRRTLFTENLSPLNYDIF 318

Query: 223 KKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             + +  FGKR     + LR SL  +   N+L Q        A  +   DF ++   +  
Sbjct: 319 FHLVKHCFGKRNAPIIRHLR-SLSTVDPINILRQIRKNPGDTAARMYPHDFKKLFETIEQ 377

Query: 279 NQD 281
           ++D
Sbjct: 378 SED 380


>gi|47217190|emb|CAG11026.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 478

 Score = 98.7 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 116/304 (38%), Gaps = 50/304 (16%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           +F++D ++ K + +     +  T+I +   GPG LT+ LL  G +KV+ +E ++ F P L
Sbjct: 155 HFIVDPDLAKLVTQHLQPDNATTIIFDCNPGPGVLTRTLLNSGIQKVVALEGEKFFLPEL 214

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT--------------- 131
           +D+  Q   +LE++  D  K+D     N+  P      L  ++G                
Sbjct: 215 QDLEIQLDGQLEVVHCDFFKLDPIGSGNLKPPAMFTDKLFTDLGISEASWTDDIPVKVVG 274

Query: 132 ------------RLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
                       ++++      ++  +   E    + +KE  +  +   +  +Y   SVL
Sbjct: 275 MLPLRNERGMLLKMVYALFERLSFYRYGRIELNLFISEKEYLKLTSRPGDMMNYRAFSVL 334

Query: 178 TGWRTKATMMFD------I--SPHVFFPS----PKVTSTVIHFIPHLNPI-----PCCLE 220
                   ++        +  S           P     ++   P  +       P    
Sbjct: 335 WQMACDIELLHKESWESFVTSSRRSVRSPKNKLPNDNLCLVRLRPRADLFSAGLTPSNAS 394

Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGE---NLLHQAGIETNLRAENLSIEDFCRITNILT 277
           +L  + ++   KR+  L   L     +    LL + G++ ++   ++  E++ R+  ++ 
Sbjct: 395 TLLMMVKQCLAKRKVKLIDRLNLWSPDSGSKLLAEMGMQEDILTGHVYPEEYLRLFQLMD 454

Query: 278 DNQD 281
            +Q+
Sbjct: 455 KSQE 458


>gi|307091980|gb|ADN28325.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 98.7 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 8/124 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D + L+ IA +  +  G T++EIG G G LT +L   G   +I IE D+     L++  
Sbjct: 1   VDRSALEAIAGAVVAGSGDTIVEIGPGRGALTDILAARG-NPLIAIEIDRALSEKLRERY 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             +P R+ I++ D L+ D       + P  ++ N+PY I T +LF+ +     PPF  S 
Sbjct: 60  GSNP-RVTIVERDVLETDVAALA--AGPFVVVGNVPYYITTPILFHVLR----PPFPRSA 112

Query: 151 TLLF 154
             L 
Sbjct: 113 VFLV 116


>gi|307092014|gb|ADN28342.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 98.7 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I  ++       V+EIG G G LT++LL   A  V+ IE D++    L++  
Sbjct: 1   HDGNQLRRIVGAAALQPTDKVLEIGPGLGPLTELLLAE-AGTVLAIEMDRRLMDYLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           + + ++L ++ DDAL        +     +++ANLPY++ + +L     +   P
Sbjct: 60  A-NQSQLTLLHDDALGYLRRGPHDWHD-WKLVANLPYSVASPILVELALSPQRP 111


>gi|269986904|gb|EEZ93180.1| ribosomal RNA adenine methylase transferase [Candidatus
           Parvarchaeum acidiphilum ARMAN-4]
          Length = 263

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 18/206 (8%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQNFL+D ++L +  E++       V++IGAG G++  ++       +I IEK+ + +  
Sbjct: 24  GQNFLVDEDVLAEEIENAKLEPSDIVLDIGAGFGSIESVVSKKC--HIIAIEKEIKCYSY 81

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L D     PN ++II  DAL++ + KF       +II+N PYNI  R++    S D    
Sbjct: 82  LIDKYEIDPN-VQIINADALEMIYPKF------NKIISNPPYNITDRIIDKLSSYD---- 130

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
            + S  ++    + +++ + KN   +  +  +     K   + ++    F+P P+VTS +
Sbjct: 131 -FYSGVMIIPNTISKQLLSDKNETKFSSIEKI---FFKFEEITEVKKESFYPVPRVTSRM 186

Query: 206 IHFIPHLNP-IPCCLESLKKITQEAF 230
           I      N          + + + AF
Sbjct: 187 IKITKKKNDIFQEIFRRREMLLKNAF 212


>gi|307091902|gb|ADN28286.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 98.3 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 3/116 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++IA       G  V+EIG G G LT +LL  GA +V+ IEKDQ+   +L++  
Sbjct: 1   HDQNQLQRIAAFGELKPGDRVLEIGPGLGPLTAVLLAGGA-QVLAIEKDQRLCEVLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           +  P R E++  DAL+    +  + +   ++I+NLP+++ + LL     A+  P  
Sbjct: 60  AAEP-RFELLHADALEFLKRERRDWTG-WKLISNLPFSVASPLLVEMAFAEKPPDL 113


>gi|307092012|gb|ADN28341.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 98.3 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 4/114 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++IA ++G      ++EIG G G LT  L+  GA  V+ IE+D++    L+ + 
Sbjct: 1   HDQNQLRRIAAAAGLKPEDNILEIGPGLGPLTAFLVESGAN-VLAIERDRRLCECLERVF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            Q   + +++ DDAL  D+ K     +  +++ANLPY+  + +L     A   P
Sbjct: 60  PQSA-KFKLLHDDAL--DYVKKNRDWAGWKLVANLPYSAASPILVELAGAAMPP 110


>gi|148704851|gb|EDL36798.1| mCG124508 [Mus musculus]
          Length = 398

 Score = 98.3 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 106/303 (34%), Gaps = 57/303 (18%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N+++ + E         ++E   GPG LT  LL  GAR V+  E ++ F P L+ +   
Sbjct: 83  RNLVRDLLEHQNPSR-QIILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRN 140

Query: 93  HPNRLEIIQDDALKVDFEKF----------------------FNISSPIRIIANLPYN-- 128
               L+++  D  K+D                          ++   PI++   LPY   
Sbjct: 141 MDGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHE 200

Query: 129 --IGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
             I  ++LF+  S ++   +      +F  +KE  + I   K    Y  ++VL       
Sbjct: 201 RRILWKILFDLYSCESIYRYGRVELNMFVSEKEFRKLIATPKRPDLYQVMAVLWQVACDV 260

Query: 185 TMM-------FDISPHVFFP-SPKVTSTV---------IHFIPHL-----NPIPCCLESL 222
             +       F +          K   +V         +   P       N  P   +  
Sbjct: 261 KFLHMEPWSSFSVHTENGHLEKSKHGESVNLLKQNLYLVRMTPRRTLFTENLSPLNYDIF 320

Query: 223 KKITQEAFGKRR----KTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
             + +  FGKR     + LR SL  +   N+L Q        A  +   DF ++   +  
Sbjct: 321 FHLVKHCFGKRNAPIIRHLR-SLSTVDPINILRQIRKNPGDTAARMYPHDFKKLFETIEQ 379

Query: 279 NQD 281
           ++D
Sbjct: 380 SED 382


>gi|58613499|gb|AAW79336.1| chloroplast dimethyladenosine synthase [Isochrysis galbana]
          Length = 176

 Score = 98.3 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 10/138 (7%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             K+ +GQNFL+D ++ + +  +  +   G  ++E G G G LT +LL     +++ +E 
Sbjct: 46  SAKQSLGQNFLVDESMSRGMVGALEACRVGDRLVEFGPGQGALTALLLEAHP-QMLAVEL 104

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNW 137
           DQ+   +L++   +HP +L + + D L++D           +++I N P+ + +  LF  
Sbjct: 105 DQRMEAVLRE---EHP-QLALRRGDMLEIDLADLSAERGGSLQLITNTPFYLTSPFLFKL 160

Query: 138 ISADTWPPFWESLTLLFQ 155
           +         E + L  Q
Sbjct: 161 LGQLEH---VEQVVLSMQ 175


>gi|114452126|gb|ABI75037.1| erythromycin resistance protein [uncultured bacterium]
          Length = 163

 Score = 98.3 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 17/178 (9%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           EIG G G LT  +  LG R +  +E D +     K         +E++ DD L      F
Sbjct: 1   EIGPGSGALTHPMAHLG-RAITAVEVDAKLAA--KITQETSSAAVEVVHDDFL-----NF 52

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
              ++P  I+ N+P+++ T +L   + A    P W    LL Q EV  R  A   +    
Sbjct: 53  RLPATPCVIVGNIPFHLTTAILRKLLHA----PAWTDAVLLMQWEVARR-RAGVGASTM- 106

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP--IPCCLESLKKITQE 228
            ++          +   +    F P P V   ++      +P       ++ + +   
Sbjct: 107 -MTAQWSPWFTFHLGSRVPRTAFRPQPNVDGGILVIRRVGDPKIPIEQRKAFQAMVHT 163


>gi|307091864|gb|ADN28267.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 4/114 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D + L++I E +       V+EIG G G LT++L+   A  V+ IE D++   IL+   
Sbjct: 1   HDAHQLRRIIELARLQPDDFVLEIGPGLGPLTELLVEKSAH-VLAIELDRRLIEILESHL 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
                +L+I+  D L    +K  + S+  ++++NLPY++ + +L     +   P
Sbjct: 60  Q--SPKLKIVHGDGLGYVRDKTRDWSN-WKLVSNLPYSVASPILVELAESPHAP 110


>gi|56605644|ref|NP_001008294.1| dimethyladenosine transferase 2, mitochondrial [Rattus norvegicus]
 gi|81883501|sp|Q5U2T7|TFB2M_RAT RecName: Full=Dimethyladenosine transferase 2, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 2;
           AltName: Full=Mitochondrial transcription factor B2;
           Short=mtTFB2; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 2; Flags:
           Precursor
 gi|55249767|gb|AAH85870.1| Transcription factor B2, mitochondrial [Rattus norvegicus]
          Length = 397

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 102/302 (33%), Gaps = 55/302 (18%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N+++ + E         ++E   GPG LT  LL  GAR V+  E ++ F P L+ +   
Sbjct: 82  RNLVRDLLEHQNPSH-QLILECNPGPGILTGALLKAGAR-VVAFESEKMFIPHLESLRKN 139

Query: 93  HPNRLEIIQDDALKVDFEKFFNISS----------------------PIRIIANLPYN-- 128
               L+++  D  K+D      +                        PI++   LP    
Sbjct: 140 ADGELQVVHCDFFKIDPRYQELVRPDVNSHTIFQNLGIKAVPWSAGVPIKVFGILPNKHE 199

Query: 129 --IGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
             +  ++LF+  S ++   +      +F  +KE  + I   K    Y  L VL     + 
Sbjct: 200 RRLLWKILFDLYSCESIYRYGRVELNMFISEKEFRKLIATPKRPDLYQVLGVLWQVACEI 259

Query: 185 TMM-------FDISPHVFFPSPKVTST----------VIHFIPHL-----NPIPCCLESL 222
             +       F +            S           ++   P       N  P   +  
Sbjct: 260 KFLHMEPWSSFSVHAENGHLEKSKHSESLNLLKQNLYLVRMTPRRTLFTENLSPLNYDMF 319

Query: 223 KKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
             + +  FGKR   +    +SL  +   N+L Q        A  +   DF R+   +  +
Sbjct: 320 FHLVKHCFGKRNAPIIHHLRSLSTVDPINILRQIRKRPGDTAAKMYPHDFKRLFETIERS 379

Query: 280 QD 281
           +D
Sbjct: 380 ED 381


>gi|158321869|ref|YP_001514376.1| rRNA (adenine-N(6)-)-methyltransferase [Alkaliphilus oremlandii
           OhILAs]
 gi|158142068|gb|ABW20380.1| rRNA (adenine-N(6)-)-methyltransferase [Alkaliphilus oremlandii
           OhILAs]
          Length = 293

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 16/258 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL    ++ ++   S       VIEIG G G +T+ L+    +K+ V+E D   +  
Sbjct: 13  SQNFLHSKKLVNELIRKSNISKDDIVIEIGGGKGIITEQLVE-KCKKLYVVEYDYHIYKK 71

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L++  S   N +EI+  D L+ +  K        ++ +++PYNI   +L    S+   P 
Sbjct: 72  LRNRLSSIKN-IEIVYGDFLEFELPK----EHSYKVFSSIPYNITAAILSKLTSSYNSP- 125

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             E + ++ QKE   +      +    R S+L        ++  +    F P P V S  
Sbjct: 126 --EDIYIILQKEAALKYAGNPYNRESMR-SLLLKPYFDFRIIRSLERADFNPIPNVDSVF 182

Query: 206 IHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQA----GIETNL 259
           +H     N +    +           F    K ++   K +   N + +     G   + 
Sbjct: 183 MHIKKRENLLIEQDQEKLYYDFIAYIFNHIGKDMKARCKDIFSYNQIKRLSCNIGFNISD 242

Query: 260 RAENLSIEDFCRITNILT 277
              +LS E +  +    +
Sbjct: 243 SPTSLSYEQWLGVFQYFS 260


>gi|307092030|gb|ADN28350.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I  ++       V+EIG G G LT++LL   A  V+ IE D++    L++  
Sbjct: 1   HDGNQLRRIVGAAALQPTDKVLEIGPGLGPLTELLLAE-AGTVLAIEMDRRLMDYLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +   ++L ++ DDAL        +     +++ANLPY++ + +L     +   P
Sbjct: 60  ANL-SQLTLLHDDALGYLRRGPHDWHD-WKLVANLPYSVASPILVELALSPQRP 111


>gi|289670945|ref|ZP_06492020.1| dimethyladenosine transferase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 89

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
           P  F P PKV S V+  +P                + +  FG+RRKTLR +L  +     
Sbjct: 1   PGAFRPPPKVDSAVVRLVPRDPATVQINDRRRFADVVRAGFGQRRKTLRNALSTVCEPAH 60

Query: 250 LHQAGIETNLRAENLSIEDFCRITNI 275
              A +  + RAE L + DF R+ N+
Sbjct: 61  FEAAQVRPDARAEQLEVADFIRLANV 86


>gi|307091860|gb|ADN28265.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I + +      +V+EIG G G LT++L+      V+ IE D++    L+   
Sbjct: 1   HDANQLRRIVDLARLNPDDSVLEIGPGLGPLTELLVE-KVGHVLAIELDRRLVEFLESHL 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
                +L+I+  D L    +K  + S+  +++ANLPY++ + +L     +   P
Sbjct: 60  Q--SPKLKILHGDGLGYVRDKTRDWSN-WKLVANLPYSVASPILVELAESPNAP 110


>gi|154281463|ref|XP_001541544.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411723|gb|EDN07111.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 142

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 +GQ+ L +  + + I + +      TV+EIG G GNLT  +L   A+KVI +E 
Sbjct: 32  FRMNTDIGQHVLKNPGVAQAIVDKADLKQSDTVLEIGPGTGNLTVKILE-KAKKVIAVEL 90

Query: 79  DQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           D +    +       P   RLE++  D +K D   F         I+N PY 
Sbjct: 91  DPRMAAEVTKRVQGKPEQKRLEVLLGDVIKTDLPYF------DVCISNTPYQ 136


>gi|307092062|gb|ADN28366.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++IA ++       ++EIG G G LT  L+  GA  V+ IE+D++    L+   
Sbjct: 1   HDQNQLRRIAAAAELKPEDNILEIGPGLGPLTAFLVESGAN-VLAIERDRRLCECLERAF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            Q   + +++ DDAL  D+ K     +  +++ANLPY++ + +L     A   P
Sbjct: 60  PQSA-KFKLLHDDAL--DYVKKNRDWAGWKLVANLPYSVASPILVELAGAAMPP 110


>gi|307092004|gb|ADN28337.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N + +IA          ++EIG G G LT+ LL  GA KV  IEKD++    L+D  
Sbjct: 1   HDANQIARIAALGELSASDKILEIGPGLGPLTEFLLAYGA-KVFAIEKDRRLVDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           +   N  +++QDDAL    EK  + S   ++I+NLPY++ + +L   ++  + PP
Sbjct: 60  ATFSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPILVE-LALGSHPP 111


>gi|18542252|gb|AAL75499.1| ErmA [Staphylococcus aureus]
 gi|18542254|gb|AAL75500.1| ErmA [Staphylococcus aureus]
          Length = 180

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 15/186 (8%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +     +K+I   +       VIEIG+G G+ T+ L+ + +R V  IE D     + K+ 
Sbjct: 1   ITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKM-SRSVTAIEIDGGLCQVTKEA 59

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
            +   N +++IQ D LK  F K  N     +I  N+PYNI T ++       T+    + 
Sbjct: 60  VNPSEN-IKVIQTDILKFSFPKHIN----YKIYGNIPYNISTDIVKRI----TFESQAKY 110

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
             L+ +K   +R+   +       L +L        M+  + P  F P P V S +I   
Sbjct: 111 SYLIVEKGFAKRLQNLQR-----ALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLE 165

Query: 210 PHLNPI 215
            H   I
Sbjct: 166 RHQPLI 171


>gi|312836920|dbj|BAJ34818.1| erythromycin resistance protein [Photobacterium damselae subsp.
           piscicida]
          Length = 303

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 12/175 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL +  +++ +   S       V+EIG G G +T+ L  +  + V  IE D      
Sbjct: 19  SQNFLHNTKLVEDLLFKSNITKEDFVVEIGPGKGIITKALSKIC-KAVTAIEFDSVLADK 77

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L        + + II+ D LK +           ++ +N+P+NI   +L   + ++  P 
Sbjct: 78  LTHEFK--SSNVSIIEADFLKYNLPDH-----NYKVFSNIPFNITASILNKLLDSENPP- 129

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 L+ Q E   +     +       S+L     K  ++   S   F P+P 
Sbjct: 130 --LDTFLIMQYEPFLKYAGAPSYKE-SYKSLLYKPFFKTNILHSFSKFDFKPAPN 181


>gi|307091906|gb|ADN28288.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 8/124 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D + L+ IA +  +  G T++EIG G G LT +L       +I IE D+     L++  
Sbjct: 1   VDQSALESIANAVVAWPGDTIVEIGPGRGALTDILARRD-NTLIAIEIDKALSEKLRERY 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           + + +R+ I+++D L+ +  +   ++ P  ++ N+PY I T +LF  +     PPF  S 
Sbjct: 60  ASN-SRVTIVENDVLETNVAEL--VAGPFVVVGNVPYYITTPILFRVLR----PPFPRSA 112

Query: 151 TLLF 154
             L 
Sbjct: 113 VFLV 116


>gi|307092032|gb|ADN28351.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 130

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 13/125 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L KI  ++       V+EIG G G LT++LL   A +V  IE D++    L +  
Sbjct: 1   HDQNQLHKIVAAAEIGPDDKVLEIGPGLGPLTELLLE-KAGEVFAIETDERLVDFLCERF 59

Query: 91  SQHPN-----------RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               N            L ++ DDAL     +  + S   +++ANLPY++ + +L     
Sbjct: 60  GLRANESAGAKETPAHNLCLLHDDALAFIKRERRDWSD-WKLVANLPYSVASPILVELAQ 118

Query: 140 ADTWP 144
           +   P
Sbjct: 119 SPKHP 123


>gi|307091966|gb|ADN28318.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 96.4 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++    L+D  
Sbjct: 1   HDANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIEFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +   N  +++QDDAL    EK  +     ++++NLPY++ + +L   ++  + PP     
Sbjct: 60  ATFSN-FDLLQDDALAYLKEKDRDWRD-WKLVSNLPYSVASPILVE-LALGSHPPECLVA 116

Query: 151 TL 152
           TL
Sbjct: 117 TL 118


>gi|313848515|emb|CBY77552.1| rRNA methylase [Pasteurella multocida]
 gi|323721360|gb|ADY05332.1| Erm methyltransferase [Pasteurella multocida]
          Length = 301

 Score = 96.4 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 12/175 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            QNFL +  +++ +   S       V+EIG G G +T+ L  +  + V  IE D      
Sbjct: 17  SQNFLHNTKLVEDLLFKSNITKEDFVVEIGPGKGIITKALSKIC-KAVNAIEFDSVLADK 75

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L        + + II+ D LK +           ++ +N+P+NI   +L   + ++  P 
Sbjct: 76  LSHEFK--SSNVSIIEADFLKYNLPDH-----NYKVFSNIPFNITASILNKLLDSENPP- 127

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 L+ Q E   +     +       S+L     K  ++   S   F P+P 
Sbjct: 128 --LDTFLIMQYEPFLKYAGAPSYKE-SYKSLLYKPFFKTNILHSFSKFDFKPAPN 179


>gi|307091962|gb|ADN28316.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 96.4 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N + +IA          ++EIG G G LT+ LL  GA KV  IEKD++    L+D  
Sbjct: 1   HDANQIARIAALGELSASDKILEIGPGLGPLTEFLLAYGA-KVFAIEKDRRLVDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           +   N  +++QDDAL    EK  + S   ++I++LPY++ + +L   ++  + PP
Sbjct: 60  ATFSN-FDLLQDDALAYLKEKDRDWSD-WKLISDLPYSVASPILVE-LALGSHPP 111


>gi|307091938|gb|ADN28304.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307091976|gb|ADN28323.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 96.4 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N+ + I +  G   G  ++EIG G G LT  L    AR + ++EKD +    L    
Sbjct: 1   HDKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDAR-LTLVEKDGRMIQWLGQQF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               +R+E+   DAL  D    +    P+RII NLPY + T L+  + +A
Sbjct: 60  R--SDRVELFHIDALDFDLRTLYGRG-PVRIIGNLPYYVSTPLIAKYTAA 106


>gi|307091910|gb|ADN28290.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 136

 Score = 96.0 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 19/133 (14%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L +I  ++       V+EIG G G LT+ LL   A KV+ IEKD++    L+   
Sbjct: 1   HDGNQLCRIIAAAELTGSDKVLEIGPGLGALTE-LLWAQAGKVLAIEKDRRLIEFLQKRF 59

Query: 91  SQH-----------------PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                                   +++ DDALK    +  + S   +++ANLPY++ + +
Sbjct: 60  GSEFRLQPVGHTRAEPPKGGTPNFQLLHDDALKFLKREQRDWSD-WKLVANLPYSVASPI 118

Query: 134 LFNWISADTWPPF 146
           L         P  
Sbjct: 119 LVELAQCPRRPKH 131


>gi|213421151|ref|ZP_03354217.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 89

 Score = 96.0 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1   MNNRVHQ--------GHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           + +      K+ VIE D+     L+        +L I Q
Sbjct: 53  EPVGERL-DKLTVIELDRDLAARLQ-THPFLGPKLTIYQ 89


>gi|307091876|gb|ADN28273.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 96.0 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N+ + I +  G   G  ++EIG G G LT  L    AR + ++EKD +    L    
Sbjct: 1   HDKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDAR-LTLVEKDGRMIQWLGQQF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               +R+E+   DAL  D    +    P+RII NLPY + T L+  + +A
Sbjct: 60  R--SDRVELFHIDALDFDLRTLYGRG-PVRIIGNLPYYVSTPLIAKYTAA 106


>gi|307091974|gb|ADN28322.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 95.6 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++    L+D  
Sbjct: 1   HDANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           +   N L+++QDDAL    EK  + S   ++++NLPY++ + +L   ++  + PP
Sbjct: 60  ATFSN-LDLLQDDALAYLKEKDRDWSD-WKLVSNLPYSVASPILVE-LALGSHPP 111


>gi|307092002|gb|ADN28336.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++    L+D  
Sbjct: 1   HDANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           +   N  +++QDDAL    EK  + S   ++++NLPY++ + +L   ++  + PP
Sbjct: 60  ATFSN-FDLLQDDALAYLKEKDRDWSD-WKLVSNLPYSVASPILVE-LALGSHPP 111


>gi|307092052|gb|ADN28361.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I  ++       V+EIG G G LT++LLT  A  V+ I+ D++    LK+  
Sbjct: 1   HDGNQLRRIVSAAALKGTDKVLEIGPGLGPLTELLLTE-AGSVLAIDLDRRLVDFLKERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           ++  N   ++ DDAL        +     +++ANLPY++ + +L     +   P
Sbjct: 60  AETKNP-TLLHDDALGYLRRGPHDWHD-WKLVANLPYSVASPILVELAQSPLRP 111


>gi|224770|prf||1112181A gene ermE
          Length = 133

 Score = 95.6 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  GQNFL D   + +IAE++     + V+E G   G LT+ L    AR+V   E D +
Sbjct: 36  RRQFGQNFLRDRKTIARIAETAELRPDLPVLEAGPVEGLLTRELADR-ARQVTSYEIDPR 94

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
               L++  S HPN +E++  D L  +         P   +  +P
Sbjct: 95  LAKSLREKLSGHPN-IEVVNADFLTAEPP-----PEPFAFVGAIP 133


>gi|18657023|gb|AAL78110.1|AC093568_20 Putative dimethyladenosine transferse [Oryza sativa]
 gi|21321757|gb|AAM47292.1|AC122146_11 Putative dimethyladenosine transferse [Oryza sativa Japonica Group]
          Length = 120

 Score = 95.3 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 38/77 (49%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            I  +K  GQ+ L +  ++  I E +G     TV+EIG G GNLT+ LL  G + V+ +E
Sbjct: 31  GIPFEKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVE 90

Query: 78  KDQQFFPILKDISSQHP 94
            D +    L       P
Sbjct: 91  LDPRMVLELNRRFQGDP 107


>gi|307091988|gb|ADN28329.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++IA++        V+EIG G G LT++LL   A +VI IEKD +   +L++  
Sbjct: 1   HDQNQLRRIADAGVLAKTDRVLEIGPGLGPLTELLLER-AGQVIAIEKDLRLVTVLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +   N LE+   DAL V  +   +     +++ANLPY++ + +L         P
Sbjct: 60  ASTGN-LELQHADALVVVKDHTRDWHD-WKLVANLPYSVASPILVELAQNARRP 111


>gi|307091880|gb|ADN28275.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 94.9 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N + +IA          ++EIG G G LT++LL  GA KV  IEKD++F   L+D  
Sbjct: 1   HDANQIARIAALGELSVSDKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +  P+  E++QDDAL    EK  + S   ++I+NLPY++ + +L         P
Sbjct: 60  ATFPD-FELLQDDALAYLKEKDRDWSD-WKLISNLPYSVASSILVELALGSRPP 111


>gi|307092046|gb|ADN28358.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 94.9 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++IA ++       ++EIG G G LT  L+  GA  V+ IE+D++    L+ + 
Sbjct: 1   HDQNQLRRIAAAAELKPEDNILEIGPGLGPLTAFLVESGAN-VLAIERDRRLCECLERVF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            Q   + ++  DDAL  D+ K     +  +++ NLPY++ + +L         P
Sbjct: 60  PQSA-KFKLPHDDAL--DYVKKNRDWAGWKLVVNLPYSVASPILVELAGTAMPP 110


>gi|307092042|gb|ADN28356.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 94.9 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L +I  ++G     +++EIG G G LT  LL   A KV+ IEKD +    L +  
Sbjct: 1   HDQNQLLRIVAAAGLSKSDSILEIGPGLGPLTD-LLIANAAKVMAIEKDARLLAFLGEKY 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            Q    L+++  DAL+    +  + S   ++++NLPY++ + +L         P   
Sbjct: 60  QQTS--LDLVYADALEFLQTEQRDWSD-WKVVSNLPYSVASPILVELACGARAPKKI 113


>gi|307091958|gb|ADN28314.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 94.9 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N + +IA          ++EIG G G LT+ LL  GA KV+ IEKD++    L+D  
Sbjct: 1   HDANQIARIAALGELSASDKILEIGTGLGPLTEFLLAYGA-KVLAIEKDRRLVDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           +   N  +++QDDAL    EK  + S   ++I+NLPY++ + +L   ++  + PP
Sbjct: 60  ATFSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPILVE-LALGSHPP 111


>gi|307091948|gb|ADN28309.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 94.9 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N + +IA          ++EIG G G LT++LL  GA KV  IEKD++F   L+D  
Sbjct: 1   HDANQIARIAALGELSVSDKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +   +  E++QDDAL    EK  + S   ++I+NLPY++ + +L         P
Sbjct: 60  ATFSD-FELLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPILVELALGSRPP 111


>gi|307091882|gb|ADN28276.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 4/115 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L +IA          ++EIG G G LT+ LL  GA KV  IEKD++    L+D  
Sbjct: 1   HDANQLARIAALGELSASDKILEIGPGLGPLTEFLLASGA-KVFAIEKDRRLIDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
               N  +++QDDAL    EK  + S   ++I+NLPY++ + +L   ++  + PP
Sbjct: 60  VSVSN-FDLLQDDALAYLNEKDSDWSD-WKLISNLPYSVASPILVE-LALGSHPP 111


>gi|307091946|gb|ADN28308.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N+ + I +  G   G  ++EIG G G LT  L     R + ++EKD +    L    
Sbjct: 1   HDKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDVR-LTLVEKDGRMIQWLGQQF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               +R+E+   DAL  D    +    P+RII NLPY + T L+  + +A
Sbjct: 60  R--SDRVELFHIDALNFDLRTLYGRG-PVRIIGNLPYYVSTPLIAKYTAA 106


>gi|307092060|gb|ADN28365.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++IA ++       ++EIG G G LT  L+  GA  V+ IE+D++    L+ + 
Sbjct: 1   HDQNQLQRIAAAAELKPEDNILEIGPGLGPLTAFLVESGAN-VLAIERDRRLCECLERVF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            Q   + +++ DDA   D+ K     +  +++ANLPY++ + +L     A   P
Sbjct: 60  PQSA-KFKLLHDDA--PDYVKKNRDWAGWKLVANLPYSVASPILVELAGAAMPP 110


>gi|307092066|gb|ADN28368.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L +I  ++G     +++EIG G G LT  LL   A KV+ IEKD +    L +  
Sbjct: 1   HDQNPLLRIVAAAGLSKSDSILEIGPGLGPLTD-LLIANAAKVMAIEKDARLLAFLGEKY 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            Q    L+++  DAL+    +  + S   ++++NLPY++ + +L         P   
Sbjct: 60  QQTS--LDLVYADALEFLQTEQRDWSD-WKVVSNLPYSVASPILVELACGARAPKKI 113


>gi|307091944|gb|ADN28307.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++F   L+D  
Sbjct: 1   HDANQLARIAALGELSTADKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +   N  +++QDDAL    EK  + S   ++I+NLPY++ + +L         P
Sbjct: 60  ANLSN-FDLLQDDALAYLKEKDRDWSD-WKLISNLPYSVASPILVELALGSRPP 111


>gi|281347296|gb|EFB22880.1| hypothetical protein PANDA_013195 [Ailuropoda melanoleuca]
          Length = 396

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 106/306 (34%), Gaps = 69/306 (22%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           +I +         ++E   GPG LTQ LL   A KVI +E ++ F P L+ +  +   +L
Sbjct: 86  RILK--EENADRLILECNPGPGILTQALLESKA-KVIALESNRTFLPHLESLREKVNGKL 142

Query: 98  EIIQDDALKVDFEKFFNISSPIRI---------IANLPYNIGTR--------------LL 134
           E++  D  K+D         PI I         I  +P++  T               +L
Sbjct: 143 EVVYCDFFKMDPRNSGIAKPPIMISETLFHHFGIKAVPWSEDTPLRVIGIFPAKNEKKIL 202

Query: 135 FNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH-YGRLSVLTGWRTKATMMF 188
           +  +     S   +      L +   +   E++ A   +PH Y  LSVL     K  ++ 
Sbjct: 203 WKLLYDIYSSTSVYSYGRVELNMFVTEREYEKLVASPQNPHLYQALSVLWQVACKIKLL- 261

Query: 189 DISPHVFFPSPKVTS-------------------------TVIHFIPHLNPIP-----CC 218
            + P   F    V S                          +I   P  N          
Sbjct: 262 HVEPWSSF---GVYSQSGQQKKQKNKKPLEPKNKQVGQNMCLIQLTPLRNLFTENLTSVN 318

Query: 219 LESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
            +    + ++ F KR   L    Q L  +    +L Q G   +++   L  +DF  +   
Sbjct: 319 YDVFFHMLKQCFMKRNFKLMDHLQLLSPVNATAILKQIGKHGDMKITELYPQDFKLLFET 378

Query: 276 LTDNQD 281
           +  +++
Sbjct: 379 IECSKE 384


>gi|307091964|gb|ADN28317.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++F   L+D  
Sbjct: 1   HDANQLARIAVLGELSASDKILEIGPGLGPLTELLLASGA-KVFAIEKDRRFIDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           +   N  +++QDDAL    EK  +     ++I+NLPY++ + +L         P
Sbjct: 60  ATFSN-FDLLQDDALAYLREKDRDWGD-WKLISNLPYSVASPILVELALGSNPP 111


>gi|301777091|ref|XP_002923964.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like
           [Ailuropoda melanoleuca]
          Length = 399

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 106/306 (34%), Gaps = 69/306 (22%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           +I +         ++E   GPG LTQ LL   A KVI +E ++ F P L+ +  +   +L
Sbjct: 86  RILK--EENADRLILECNPGPGILTQALLESKA-KVIALESNRTFLPHLESLREKVNGKL 142

Query: 98  EIIQDDALKVDFEKFFNISSPIRI---------IANLPYNIGTR--------------LL 134
           E++  D  K+D         PI I         I  +P++  T               +L
Sbjct: 143 EVVYCDFFKMDPRNSGIAKPPIMISETLFHHFGIKAVPWSEDTPLRVIGIFPAKNEKKIL 202

Query: 135 FNWI-----SADTWPPFWESLTLLFQKEVGERITAQKNSPH-YGRLSVLTGWRTKATMMF 188
           +  +     S   +      L +   +   E++ A   +PH Y  LSVL     K  ++ 
Sbjct: 203 WKLLYDIYSSTSVYSYGRVELNMFVTEREYEKLVASPQNPHLYQALSVLWQVACKIKLL- 261

Query: 189 DISPHVFFPSPKVTS-------------------------TVIHFIPHLNPIP-----CC 218
            + P   F    V S                          +I   P  N          
Sbjct: 262 HVEPWSSF---GVYSQSGQQKKQKNKKPLEPKNKQVGQNMCLIQLTPLRNLFTENLTSVN 318

Query: 219 LESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNI 275
            +    + ++ F KR   L    Q L  +    +L Q G   +++   L  +DF  +   
Sbjct: 319 YDVFFHMLKQCFMKRNFKLMDHLQLLSPVNATAILKQIGKHGDMKITELYPQDFKLLFET 378

Query: 276 LTDNQD 281
           +  +++
Sbjct: 379 IECSKE 384


>gi|26354937|dbj|BAC41095.1| unnamed protein product [Mus musculus]
          Length = 396

 Score = 93.7 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 106/304 (34%), Gaps = 59/304 (19%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N+++ + E         ++E   GPG LT  LL  GAR V+  E ++ F P L+ +   
Sbjct: 81  RNLVRDLLEHQNPSR-QIILECNPGPGILTGALLKAGAR-VVAFESEKTFIPHLEPLQRN 138

Query: 93  HPNRLEIIQDDALKVDFEKF----------------------FNISSPIRIIANLPYN-- 128
               L+++  D  K+D                          ++   PI++   LPY   
Sbjct: 139 MDGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHE 198

Query: 129 --IGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
             I  ++LF+  S ++   +      +F  +KE  + I   K    Y  ++VL       
Sbjct: 199 RRILWKILFDLYSCESIYRYGRVELNMFVSEKEFRKLIATPKRPDLYQVMAVLWQVACDV 258

Query: 185 TMM-------FDI------------SPHVFFPSPKVTSTVIHFIPHL-----NPIPCCLE 220
             +       F +               V    P +   ++   P       N  P   +
Sbjct: 259 KFLHMEPWSSFSVHTENGHLEKSKHGESVNLLKPNLY--LVRMTPRRTLFTGNLSPLNYD 316

Query: 221 SLKKITQEAFGKRRKTLRQ---SLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277
               + +  FGKR   + +   SL  +   N+L Q        A  +   DF ++   + 
Sbjct: 317 IFFHLVKPCFGKRHAPIIRHLPSLSTVDPINILRQIRKNPGDTAARMYPHDFKKLFETIE 376

Query: 278 DNQD 281
            ++D
Sbjct: 377 PSED 380


>gi|307091870|gb|ADN28270.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 93.3 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D  +L+ I+ S       TVIEIG G G LT+ LL+ GA  VI IEKD  +   L    
Sbjct: 1   IDEGVLEFISNSLDFKKDETVIEIGPGLGFLTRFLLSHGA-SVIAIEKDPAYVEFLTHYY 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
                +  I+  D LK    +      P+++  N+PYNI + +L   I    
Sbjct: 60  KNK--KFRIVASDVLKTKISEL-TSGDPVKVCGNIPYNITSPILEWLILQKN 108


>gi|307092000|gb|ADN28335.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 92.9 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L +IA          ++EIG G G LT++LL  GA KV  IEKD++    L+D  
Sbjct: 1   HDANQLARIAALGELSASDKILEIGPGLGPLTELLLAPGA-KVFAIEKDRRLIDFLRDRF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           +   N  +++QDDAL    EK  +     ++++NLPY++ + +L   ++  + PP
Sbjct: 60  ATFSN-FDLLQDDALAYLKEKDRDRRD-WKLVSNLPYSVASPILVE-LALGSHPP 111


>gi|301603803|ref|XP_002931532.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Xenopus
           (Silurana) tropicalis]
          Length = 414

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 111/306 (36%), Gaps = 60/306 (19%)

Query: 29  FLLDLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           F+ D ++ K   +         +G  ++E   GPG LTQ LL  GAR V+ +E ++ F P
Sbjct: 87  FIGDPSMAKTFLKCLQPWDDRGNGPIILECDPGPGILTQTLLAAGAR-VVALESNKDFLP 145

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL----------- 133
            L+ + +    +LE++  D  K+D      +  P+   + L  ++               
Sbjct: 146 SLQLLENNMDGQLEVVHCDFFKLDPLGHGTMQPPVMYSSVLFNSLCIPEAPWIKDVPFKV 205

Query: 134 ----------------LFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLS 175
                           ++N    ++   +   E    + +K+  + ++   +  +Y  LS
Sbjct: 206 FGILPQKNESTFLWKQIYNLFERNSIYRYGRIELNVFISEKQYTKLVSQPGDMRNYQALS 265

Query: 176 VLTGWRTKATMM-------------FD---ISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
            L        ++             F    I   V  P+  +   ++   P  +     L
Sbjct: 266 ALFQASCDIQLLHMEPWSSFLTPLRFKGAAIPRSVIVPNDHL--CLVRITPRRDLFTDSL 323

Query: 220 -----ESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAGIETNLRAENLSIEDFCR 271
                 +   + ++  GKR+  L   L       G  LL Q  +  +++  N+S E + +
Sbjct: 324 TRENGNTFIVMVKQCLGKRKAKLVDRLNSWDPGNGHKLLRQLALPEDIQTGNVSPEQYKQ 383

Query: 272 ITNILT 277
           +  I+ 
Sbjct: 384 LFEIME 389


>gi|307092020|gb|ADN28345.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 92.6 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 31  LDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            D N+ +    +S     +   V+EIG G G +T+  L  G   V  IE D+    +L+ 
Sbjct: 1   HDQNLAQATVRASLEEISEVSQVVEIGPGMGAITEFFLA-GGTAVTAIEVDKGLAEVLRA 59

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
             S   N+  +++ D LKV+            ++ NLPY I T L+  W+     P
Sbjct: 60  RFSG-DNKFHLVEGDVLKVEMSPLIMAR---VVVGNLPYYISTPLIARWMECPQPP 111


>gi|307092006|gb|ADN28338.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 92.6 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 4/110 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D+N+ + I        G  V+EIG G G LT++L+      + +IEKDQ+    L++  
Sbjct: 1   HDMNLARWIVGQLRVRSGEHVVEIGPGLGALTELLVREDIL-LTLIEKDQRMVKWLRERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           +    R+E+   DAL  D    +  S PI+II NLPY + T L+  +ISA
Sbjct: 60  A--SPRVELFHIDALDFDLRTLYG-SGPIKIIGNLPYYVATALIAKYISA 106


>gi|307091990|gb|ADN28330.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 92.2 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N+ + I +  G   G  ++EIG G G LT  L     R + ++EKD +    L    
Sbjct: 1   HDKNLARWIVDQLGVQTGDHIVEIGPGLGALTGWLAQYDVR-LTLVEKDGRMIQWLGQQF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               +R+E+   DAL  D    +    P+RII NLP+ + T L+  + +A
Sbjct: 60  R--SDRVELFHIDALDFDLRTLYGRG-PVRIIGNLPHYVSTPLIAKYTAA 106


>gi|146271005|gb|ABQ17973.1| ribosomal methylase [Streptococcus uberis]
 gi|146285379|gb|ABQ18265.1| ribosomal methylase [Streptococcus uberis]
          Length = 174

 Score = 92.2 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 21/195 (10%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +I  D L+      
Sbjct: 1   EIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ---- 54

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           F      +I+ N+PY++ T+++   +        +  +   F K   +          + 
Sbjct: 55  FPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---------HR 105

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232
            L +L   +     +  +    F P PKV S +I    H   +P     L       F  
Sbjct: 106 TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV- 160

Query: 233 RRKTLRQSLKRLGGE 247
             K + +  ++L  +
Sbjct: 161 -SKWVNREYRQLFTK 174


>gi|307092038|gb|ADN28354.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 130

 Score = 91.8 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L KI  ++       V+EIG G G LT++LL   A +V  I+ D++    L +  
Sbjct: 1   HDQNQLHKIVAAAEIGPDDKVLEIGPGLGPLTELLLE-KAGEVFAIKTDERLVDFLCERF 59

Query: 91  SQHPN-----------RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
               N            L ++ DDAL     +  + S   +++ NLPY++ + +L     
Sbjct: 60  GLRANESVGAKETPAHNLCLLHDDALAFIKRERRDWSD-WKLVTNLPYSVASPILVELAQ 118

Query: 140 ADTWP 144
           +   P
Sbjct: 119 SPKRP 123


>gi|146285381|gb|ABQ18266.1| ribosomal methylase [Streptococcus uberis]
          Length = 174

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 21/195 (10%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +I  D L+      
Sbjct: 1   EIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTLIHQDILQFQ---- 54

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           F      +I+ N+PY++ T+++   +        +  +   F K   +          + 
Sbjct: 55  FPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI---------HR 105

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232
            L +L   +     +  +    F P PKV S +I    H   +P     L       F  
Sbjct: 106 TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV- 160

Query: 233 RRKTLRQSLKRLGGE 247
             K + +  ++L  +
Sbjct: 161 -SKWVNREYRQLFTK 174


>gi|229077320|ref|ZP_04209997.1| Dimethyladenosine transferase [Bacillus cereus Rock4-2]
 gi|228705976|gb|EEL58287.1| Dimethyladenosine transferase [Bacillus cereus Rock4-2]
          Length = 106

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLG 245
             +   VF P P V S +I  +    P+    +     ++ + +F +RRKTL  +L    
Sbjct: 1   MTVPRTVFVPQPNVDSAIIRLLKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNL 60

Query: 246 G---------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
                     + +L + GI+   R E LSIE+F  ++N L  ++
Sbjct: 61  NGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALVLHK 104


>gi|159466026|ref|XP_001691210.1| ribosomal RNA adenine methylase transferase [Chlamydomonas
           reinhardtii]
 gi|158279182|gb|EDP04943.1| ribosomal RNA adenine methylase transferase [Chlamydomonas
           reinhardtii]
          Length = 203

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 82/240 (34%), Gaps = 80/240 (33%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +I  KK +GQNF++D  IL+ I  ++   +                              
Sbjct: 39  RIKAKKSLGQNFMMDDTILRDIVAAAAVPE------------------------------ 68

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                              L+++  DA+K         +  ++++ANLPYNI   LL   
Sbjct: 69  -------------------LQLVHGDAVK---------AKRVKVVANLPYNITKELLQ-- 98

Query: 138 ISADTWPPFWESLTLLFQKEVGERITAQ-KNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
                       L L+ Q E GER+T +      Y                F IS   + 
Sbjct: 99  -LLLPLGGLVSDLHLMLQHEAGERLTERTPGGREYR---------------FRISRFKYD 142

Query: 197 PSPKVTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQA 253
           P P V   ++ F    P         ++L ++  +AF +RRK +R SL  L        A
Sbjct: 143 PVPGVDGALVTFALRPPGARLQVPSEQALMELVDKAFSERRKKMRNSLSPLYSSEEFRGA 202


>gi|307092016|gb|ADN28343.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 118

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D N L++I  ++       V+EIG G G LT++LLT  A  V+ I+ DQ+    LK+  
Sbjct: 1   HDGNQLRRIVSAAALKGTDKVLEIGPGLGPLTELLLTE-AGSVLAIDLDQRLVDFLKERF 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           ++  N L +  DDA         +     +++ANLPY++ + +L     +   P
Sbjct: 60  AETKN-LTLPHDDAPGYLRRGPHDWHD-WKLVANLPYSVASPILVELAQSPLRP 111


>gi|146271003|gb|ABQ17972.1| ribosomal methylase [Streptococcus uberis]
          Length = 174

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 21/195 (10%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +I  D L+      
Sbjct: 1   EIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ---- 54

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           F      +I+ ++PY++ T+++   +        +  +   F K   +          + 
Sbjct: 55  FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI---------HR 105

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232
            L +L   +     +  +    F P PKV S +I    H   +P     L       F  
Sbjct: 106 TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV- 160

Query: 233 RRKTLRQSLKRLGGE 247
             K + +  ++L  +
Sbjct: 161 -SKWVNREYRQLFTK 174


>gi|146271001|gb|ABQ17971.1| ribosomal methylase [Streptococcus uberis]
          Length = 174

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 21/195 (10%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +I  D L+      
Sbjct: 1   EIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTLIHQDILQFQ---- 54

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           F      +I+ ++PY++ T+++   +        +  +   F K   +          + 
Sbjct: 55  FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI---------HR 105

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232
            L +L   +     +  +    F P PKV S +I    H   +P     L       F  
Sbjct: 106 TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV- 160

Query: 233 RRKTLRQSLKRLGGE 247
             K + +  ++L  +
Sbjct: 161 -SKWVNREYRQLFTK 174


>gi|164653709|gb|ABY65240.1| erythromycin resistance methylase [Streptococcus suis]
          Length = 198

 Score = 90.3 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 23/208 (11%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           EIG+G G+ T+      +R V  IE D+    + + +     N +++I  D LK +F K 
Sbjct: 5   EIGSGKGHFTKE-HVKMSRWVDSIEIDEDLCQVTQKVVKPFQN-IKVIHTDILKFNFPK- 61

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
              +   +I  N+P+NI T ++            +          + E   A++      
Sbjct: 62  ---NKDYKIFGNIPFNISTDIVKKIAFESNSKYSYL---------IVENGFAKRLQNTKR 109

Query: 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFG 231
            L +L        ++  +    F P P V S +I    H   I     +  +        
Sbjct: 110 ALGLLLMVELDIRVLKKVPRAYFHPKPNVDSVLIVLERHQPLILKKDYKEYQSFVY---- 165

Query: 232 KRRKTLRQSLKRLGGENLLHQAGIETNL 259
              K + +  + L  +N   QA    N+
Sbjct: 166 ---KWVNREYRVLFTKNQFRQALKHANV 190


>gi|307092036|gb|ADN28353.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 119

 Score = 89.9 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D   +++IA S G L G TV+EIG G G +T  L    A  V+ IE D      L+   
Sbjct: 1   IDAQAIERIAASLGDLHGHTVVEIGPGAGAITGTLAAR-ADHVLAIELDNGLAAHLRTQF 59

Query: 91  SQHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
               +++ ++Q D L  DF          + +  NLPY I +++L    ++         
Sbjct: 60  PA--DKVTVLQQDVLNFDFAAASAAAGERLAVAGNLPYGITSQILLKLAASHKALDRAVL 117

Query: 150 LT 151
           + 
Sbjct: 118 MV 119


>gi|167470195|ref|ZP_02334899.1| dimethyladenosine transferase [Yersinia pestis FV-1]
          Length = 81

 Score = 89.5 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 206 IHFIPHLN-PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           +  IP++  P P   +  L +IT +AF +RRKT+R SL  L     L + GI+  LRAEN
Sbjct: 1   MRLIPYVQMPHPGGDVRMLSRITTQAFNQRRKTVRNSLGDLFTSEQLIELGIDPILRAEN 60

Query: 264 LSIEDFCRITNILT 277
           +S+  +C++ N L+
Sbjct: 61  ISVAQYCKLANWLS 74


>gi|149641645|ref|XP_001513371.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 295

 Score = 89.1 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 100/282 (35%), Gaps = 63/282 (22%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           GPG LT+ LL  GAR V+ +E D  F P L+ + +    +LE++  D   +D      + 
Sbjct: 7   GPGILTRALLQTGAR-VVALESDAAFLPHLQSLKNSLDGQLEVVHCDFFALDCNSEI-LK 64

Query: 117 SPIRI---------IANLPYNIGTRL-LFNWISADTWPP-FWESLTLLFQ---------- 155
            P  +         I  +P+     + +  ++ +   P   W  L  L+Q          
Sbjct: 65  PPAMLSEHLFEGLGIQEVPWTADIPVKIVGFLPSRREPHTLWRLLYSLYQRLSVFSYGRI 124

Query: 156 --------KEVGERITAQKNSPHYGRLSVLTGWRTKATMM-------FDISPHVFFPS-- 198
                   KE    + ++ N   Y  LSVL        ++       F ++     P   
Sbjct: 125 ELNMFLSEKEYTR-LVSKPNEKKYQALSVLWQIACDIELLHMEPLSSFVMNSRNCVPQKS 183

Query: 199 PKVTS----TVIHFIPHLNPI-----PCCLESLKKITQEAFGKRRKTLRQSLKRLG---G 246
            KV S     ++   P  +       P        + +++F K +  L  +L       G
Sbjct: 184 KKVESPSNLCLVKMTPRKDLFSESLTPLNSTFFFHLVKQSFVKHKFKLMDNLNLWNPFDG 243

Query: 247 ENLLHQAGIETNLRAEN-----LSIEDFCRITNILTDNQDIA 283
           EN+L +       R E+     L   +F  +   +  +Q  +
Sbjct: 244 ENILKRL-----KRQEDDTFNSLFPHEFKYLFEAMEGSQSFS 280


>gi|307092018|gb|ADN28344.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 115

 Score = 88.7 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I ++ G L   TV+EIG G G LT  LL   A+ VI +E D      L+       N 
Sbjct: 7   RAIVDALGDLSQATVLEIGPGRGVLT-GLLAARAKHVIAVELDAALAASLQ------GNS 59

Query: 97  LEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           +E++  D LKVD         + + +I NLPY I + +L +  +   +   
Sbjct: 60  VEVLCQDILKVDLTGLAVQHGTRLFVIGNLPYYISSPILTHLFAHSAFIDR 110


>gi|324998303|ref|ZP_08119415.1| rRNA (adenine-N(6)-)-methyltransferase [Pseudonocardia sp. P1]
          Length = 294

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 17/195 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +   GQNFL D  +   +A  +       ++E+GAG G LT  LL LG R V  +E D  
Sbjct: 13  RHEHGQNFLADPAVPAALAAVAAGWPPRPLLELGAGDGALTAALLDLG-RPVTAVELDPY 71

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L +        +++   D ++        +   + +++N+PY + T LL       
Sbjct: 72  RASRLGERFGTA---VDVRHGDLVR------EPLGRAVDVVSNVPYALTTPLL----RRL 118

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
              P W    LL Q EV  +  A   +     L+       +  +   +    F P P V
Sbjct: 119 LAAPRWGHALLLLQWEVARKRAAVGGTT---ALTARWWPWYEFRLHGRVPARSFRPVPSV 175

Query: 202 TSTVIHFIPHLNPIP 216
              ++       P+ 
Sbjct: 176 DGGILEIARRDRPLV 190


>gi|207109769|ref|ZP_03243931.1| dimethyladenosine transferase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 157

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%)

Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +PY I TRL+ N +      P    L ++ QKEV  +  A+ +      LSVL      A
Sbjct: 1   MPYYIATRLVLNALKD----PKCRGLLVMTQKEVALKFCARDSQN---ALSVLAHAIGDA 53

Query: 185 TMMFDISPHVFFPSPKVTSTVIHFIPH----------------LNPIPCCLESLKKITQE 228
           T++FD+ P  F P PKV S+V   I                     +    E+L+   + 
Sbjct: 54  TLLFDVPPSAFSPPPKVFSSVFEVIKEPLKEKALASLAQAPFFEESLQKGFETLEDFLKA 113

Query: 229 AFGKRRKTLRQSLKR 243
            F   RKTL  +LK+
Sbjct: 114 CFSSPRKTLSNNLKK 128


>gi|212722044|ref|NP_001131280.1| hypothetical protein LOC100192593 [Zea mays]
 gi|194691072|gb|ACF79620.1| unknown [Zea mays]
          Length = 159

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 35/75 (46%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +    K  GQ+ L +  +L  IA  +    G  V+E+G G GNLT  LL   A +V  +E
Sbjct: 45  RFRLHKPRGQHLLTNPRVLDAIARHAAISPGDAVLEVGPGTGNLTARLLASQAARVTAVE 104

Query: 78  KDQQFFPILKDISSQ 92
            D +    +   ++ 
Sbjct: 105 IDPRMVEAVTARAAA 119


>gi|253730901|ref|ZP_04865066.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus USA300_TCH959]
 gi|253725362|gb|EES94091.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus USA300_TCH959]
          Length = 72

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
          +K  GQNFL D  ++  I  +     G  ++EIG G   LT+ +      ++ VIE D+ 
Sbjct: 1  RKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRD 59

Query: 82 FFPILK 87
              L+
Sbjct: 60 LAARLQ 65


>gi|167521732|ref|XP_001745204.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776162|gb|EDQ89782.1| predicted protein [Monosiga brevicollis MX1]
          Length = 229

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 4/179 (2%)

Query: 80  QQFFPILK----DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
                +L+        +      + Q  A K            +  I   P ++   +L 
Sbjct: 9   PGLPELLRIFNVRAKKKLSQNFILHQPCADKFVRAAGDLRDRVVVEIGGGPGSLTRAILE 68

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
                        ++TL+FQ+E GER+ A  NS H  ++S         +  + +  +VF
Sbjct: 69  AARREGLAAYGPLAMTLIFQREYGERLFAPPNSLHRAKISAFVQQYCNVSPGYLLPRNVF 128

Query: 196 FPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAG 254
            P P+V + V+H      P        + + +  F   R+ LR  ++ L G     +A 
Sbjct: 129 VPEPRVDTMVVHLESKPEPPAVDPAVFEDVLRHLFTTPRRLLRNGMQPLLGVATCAEAD 187



 Score = 69.1 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 8  HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            L  +L  + +  KK + QNF+L      K   ++G L    V+EIG GPG+LT+ +L 
Sbjct: 9  PGLPELLRIFNVRAKKKLSQNFILHQPCADKFVRAAGDLRDRVVVEIGGGPGSLTRAILE 68

Query: 68 LGARKVIV 75
             R+ + 
Sbjct: 69 AARREGLA 76


>gi|414445|gb|AAC43194.1| Homologous to Swiss-Prot Accession Number P06992, 16S rRNA
           methyltransferase [Mycoplasma genitalium]
          Length = 112

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220
           R+ A+ NS  Y        +    T +F I  H F P PKV ST+I      N       
Sbjct: 1   RLLAKVNSSDYSAFGAFCQYYLTITTVFKIDRHAFKPKPKVDSTLILLE--KNKSVSYDF 58

Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGENLL----HQAGIETNLRAENL 264
                 ++ F +RRK L  +LK     + L     +  ++T++RA+ L
Sbjct: 59  KFGLFLKQCFNQRRKMLINNLKHFFAVDYLLNIIQKQNLKTSIRAQEL 106


>gi|307092034|gb|ADN28352.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307092056|gb|ADN28363.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 115

 Score = 86.4 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I ++ G L   TV+EIG G G LT  LL   A+ VI +E D      L+       N 
Sbjct: 7   RAIVDALGDLSQATVLEIGPGRGVLT-GLLAARAKHVIAVELDAALAVSLQ------GNS 59

Query: 97  LEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           +E++  D LKVD         + + +I NLPY I + +L +  +   +   
Sbjct: 60  VEVLCQDILKVDLTGLAVQHGTRLLVIGNLPYYISSPILTHLFAHSAFIDR 110


>gi|332796502|ref|YP_004458002.1| rRNA adenine methylase transferase [Acidianus hospitalis W1]
 gi|332694237|gb|AEE93704.1| rRNA adenine methylase transferase [Acidianus hospitalis W1]
          Length = 218

 Score = 85.2 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 34/216 (15%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            + QNFL+D   + K +      D   V+E+G G GN+++++        + IE D +F 
Sbjct: 2   KLSQNFLIDKFFIFKFSSYVK-NDIKPVVEVGCGKGNISKVI-----NPDLCIEIDDKFI 55

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             LK           +I  DA        F      +I+++LPY+I            + 
Sbjct: 56  KYLKS--------YNLIIADA-------RFLPIKRGQIVSSLPYSITEDFFLEV----SK 96

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
                SL L+ QK+  ++I    N   Y  +S L  +         I P  F PSPKV S
Sbjct: 97  LDQVISLVLILQKDFIDKIL---NYATY--ISFLLNYIFDIKTHEVIPPSAFTPSPKVYS 151

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
            ++ F+          E LK +++  F  R K L+ 
Sbjct: 152 IIVTFMRKRTYNAKVDEYLKCVSR--F--RNKKLKN 183


>gi|307091908|gb|ADN28289.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 84.1 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 10/122 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KD 88
           +D ++ ++IA + G   G  V+++GAG G LT  L   GAR V+ +E D  +   L  + 
Sbjct: 1   VDRSLARRIAATVG--AGEVVLDLGAGTGALTIPLARAGAR-VVAVEADPIWADRLSGRL 57

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           + +     +E++  D L+V        S P R+++N PY I T LL   +      P+  
Sbjct: 58  VGAGLSGTVELVVGDILEVPLP-----SEPYRVVSNPPYGITTELLRRLLERPELGPYRA 112

Query: 149 SL 150
            L
Sbjct: 113 DL 114


>gi|118088134|ref|XP_419535.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 392

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 94/291 (32%), Gaps = 58/291 (19%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +GS     V+E   GPG LT+ LL  G R V+ +E    F   L+ + +    +L++I  
Sbjct: 85  AGSGPQPVVLECAPGPGVLTRTLLNAGVR-VVALESHPAFLSKLQSLENSLDGQLKVIYG 143

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIG---------------------------TRLLF 135
           D  ++D      +  P      L   +G                            RLLF
Sbjct: 144 DFFRLDPLVTGAVKPPAVCSDKLFEAMGIAAVPWRADVPVKIFGIFPQRKERNTLWRLLF 203

Query: 136 NWISADTWPPF--WESLTLLFQKEVGERITAQKNS-PHYGRLSVLTGWRTKATMMFD--- 189
                 +   +   E    + +KE  + +TA+      Y  LSVL        ++     
Sbjct: 204 ILYECSSIYRYGRVELNIFISEKEY-KVLTAKPGELRIYQALSVLWQAGCDIQLLHMEPW 262

Query: 190 -------------ISPHVFFPSPKVTSTVIHFIPHLNPI-----PCCLESLKKITQEAFG 231
                        I      P+  +   ++   P  N       P    +   + ++   
Sbjct: 263 SSFLTNMKNGRLAIPKSTRLPNDHL--CLVRLTPQQNLFTGGLKPANSATFIFMVKQCLT 320

Query: 232 KRRKTLRQSLKRL---GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
           K R  L   L        + LL    I   +   N+  ED+ R+   L ++
Sbjct: 321 KPRSKLIDRLNSWSLDNADKLLKALEIPEYVETGNVYPEDYKRLFCALQNS 371


>gi|149040853|gb|EDL94810.1| transcription factor B2, mitochondrial [Rattus norvegicus]
          Length = 367

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 96/276 (34%), Gaps = 33/276 (11%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N+++ + E         ++E   GPG LT  LL  GAR V+  E ++ F P L+ +   
Sbjct: 82  RNLVRDLLEHQNPSH-QLILECNPGPGILTGALLKAGAR-VVAFESEKMFIPHLESLRKN 139

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRI--------IANLPYNIGTRL-LFNWISADTW 143
               L+++  D  K+D      +   +          I  +P++ G  + +F  +     
Sbjct: 140 ADGELQVVHCDFFKIDPRYQELVRPDVNSHTIFQNLGIKAVPWSAGVPIKVFGILPNKHE 199

Query: 144 PPFW----------ESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
                         ES+    + E+   I+ ++    +   SV      +   +      
Sbjct: 200 RRLLWKILFDLYSCESIYRYGRVELNMFISEKEFREPWSSFSV----HAENGHLEKSKHS 255

Query: 194 VFFPSPKVTSTVIHFIPHL-----NPIPCCLESLKKITQEAFGKRRKTL---RQSLKRLG 245
                 K    ++   P       N  P   +    + +  FGKR   +    +SL  + 
Sbjct: 256 ESLNLLKQNLYLVRMTPRRTLFTENLSPLNYDMFFHLVKHCFGKRNAPIIHHLRSLSTVD 315

Query: 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
             N+L Q        A  +   DF R+   +  ++D
Sbjct: 316 PINILRQIRKRPGDTAAKMYPHDFKRLFETIERSED 351


>gi|213626131|gb|AAI71547.1| Transcription factor B2, mitochondrial [Danio rerio]
          Length = 437

 Score = 83.3 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 112/310 (36%), Gaps = 56/310 (18%)

Query: 29  FLLDLNILKKIAESS--GSLDGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           F++D  +   + +       DG  VI E   GPG LT+ LL  GA++V+ +E D  F P 
Sbjct: 112 FIVDPALATIVTDHLSRDIDDGKAVIFECNPGPGVLTRALLNRGAQRVVALESDANFLPE 171

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--------------- 130
           L ++ S+   +L+++  D  K+D      +  P+     L  ++                
Sbjct: 172 LLELESRLEGQLDVVHCDFFKLDPIGNGIMKPPVMYSEKLFSDLAISEVPWTADVPVKIV 231

Query: 131 ------------TRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSV 176
                        ++++N     +   +   E +  + QKE  + +T  ++  +Y   S 
Sbjct: 232 GLFTQRNERNLMWKMIYNLFERRSIFRYGRVELIMFISQKEYTKLVTRPRDYKNYQAFSA 291

Query: 177 LTGWRTKATMMFDISPHVFFPSPK---------VTS-----TVIHFIPHLNPI-----PC 217
           L        ++ +     F  +             S      ++   P  +       P 
Sbjct: 292 LAQMAFDIELLHEEPLSSFLTTTNNNRKSASGSTLSQSENLCLVRITPREDLFSSHLTPL 351

Query: 218 CLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAG-IETNLRAENLSIEDFCRIT 273
              +L  + ++   KR+  L     S     G  L+   G ++  L   ++  +++ R+ 
Sbjct: 352 NGSTLVLMVKQCLAKRKGKLIQQINSWSPGMGSELISNLGFLDDTLTG-DVYPDEYKRLF 410

Query: 274 NILTDNQDIA 283
            ++  +   A
Sbjct: 411 ELMEQSGSFA 420


>gi|149003646|ref|ZP_01828511.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69]
 gi|147758378|gb|EDK65378.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69]
          Length = 73

 Score = 83.3 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%)

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
           + QKEV +RI+AQ N+  YG LS+   +   A + F +   VF P+P V S ++  +   
Sbjct: 1   MMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRP 60

Query: 213 NPIPCCLESLKKI 225
            P     +     
Sbjct: 61  EPAVAVEDENFFF 73


>gi|165972415|ref|NP_001107089.1| dimethyladenosine transferase 2, mitochondrial [Danio rerio]
 gi|159155139|gb|AAI54810.1| Tfb2m protein [Danio rerio]
          Length = 437

 Score = 83.3 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 112/310 (36%), Gaps = 56/310 (18%)

Query: 29  FLLDLNILKKIAESS--GSLDGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           F++D  +   + +       DG  VI E   GPG LT+ LL  GA++V+ +E D  F P 
Sbjct: 112 FIVDPALATIVTDHLSRDIDDGKAVIFECNPGPGVLTRALLNRGAQRVVALESDANFLPE 171

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--------------- 130
           L ++ S+   +L+++  D  K+D      +  P+     L  ++                
Sbjct: 172 LLELESRLEGQLDVVHCDFFKLDPIGNGIMKPPVMYSEKLFSDLAISEVPWTADVPVKIV 231

Query: 131 ------------TRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSV 176
                        ++++N     +   +   E +  + QKE  + +T  ++  +Y   S 
Sbjct: 232 GLFTQRNERNLMWKMIYNLFERRSIFRYGRVELIMFISQKEYTKLVTRPRDYKNYQAFSA 291

Query: 177 LTGWRTKATMMFDISPHVFFPSPK---------VTS-----TVIHFIPHLNPI-----PC 217
           L        ++ +     F  +             S      ++   P  +       P 
Sbjct: 292 LAQMAFDIELLHEEPLSSFLTTTNNNRKSASGSTLSQSENLCLVRITPREDLFSSHLTPL 351

Query: 218 CLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAG-IETNLRAENLSIEDFCRIT 273
              +L  + ++   KR+  L     S     G  L+   G ++  L   ++  +++ R+ 
Sbjct: 352 NGSTLVLMVKQCLAKRKGKLIQQINSWSPGMGSELISNLGFLDDTLTG-DVYPDEYKRLF 410

Query: 274 NILTDNQDIA 283
            ++  +   A
Sbjct: 411 ELMEQSGSFA 420


>gi|41886|emb|CAA29786.1| unnamed protein product [Escherichia coli]
          Length = 67

 Score = 82.9 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 3  MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
          MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1  MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63 QMLLTLGARKVIVIEK 78
          + +      ++ VIE 
Sbjct: 53 EPVGERL-DQLTVIEL 67


>gi|322820265|gb|EFZ26937.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi]
          Length = 482

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158
           A  V    + +  + + ++ANLP+++ T LL  +        + +      L +  QKE+
Sbjct: 268 AFAVTDRWWSDGDAKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEI 327

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-- 216
            ERI A   S H+ RLSVL        M        ++P  +V   ++   P   P+   
Sbjct: 328 AERIIAPAGSIHFSRLSVLCQCFFHVQMRQTFKEMTYYPKTEVLGAMLTLQPRSVPLVPG 387

Query: 217 CCLESLKKITQEAFG--KRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270
               +L   T       +R  T+ ++L +         +L +  ++  L   +L+ E+ C
Sbjct: 388 MDAATLIHFTDLLMKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEIC 447

Query: 271 RIT 273
           ++ 
Sbjct: 448 KLA 450



 Score = 72.5 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 27  QNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           Q F+L+L +  +I               ++E+G G G LT+ LLT     V+ IE D++F
Sbjct: 91  QRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGTGALTRSLLTRPCVAVLGIEADERF 150

Query: 83  FPILKDISSQHPNRLEIIQDDALKVD 108
              L+ I      +   +  D L+V+
Sbjct: 151 NAHLEQIRQYTDGKFHWVNADVLRVN 176


>gi|18657022|gb|AAL78109.1|AC093568_19 Putative dimethyladenosine transferse [Oryza sativa]
 gi|21321758|gb|AAM47293.1|AC122146_12 Putative dimethyladenosine transferse [Oryza sativa Japonica Group]
          Length = 233

 Score = 82.5 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN 248
            +  + F P PKV S+V+   P     P   +    + +  F ++ KTL    K+     
Sbjct: 64  KVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRLCFNRKNKTLGAIFKQKRVLE 123

Query: 249 LLH---------QAGIETNLRAENLSIEDFCRITNILTD 278
           LL          Q   +     E +S +D   +++++ D
Sbjct: 124 LLEKNYKTMQSLQLTSDAEKGEEKMSPDDVALLSSMVDD 162


>gi|3859994|gb|AAC72947.1| unknown [Homo sapiens]
          Length = 125

 Score = 82.5 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 188 FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
             +  + F P PKV S+V+   P   P P   +    + +  F ++ KTL  + K    +
Sbjct: 1   MKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQ 60

Query: 248 NLLHQ-----AGIETNLRAENLSIEDFCRITNILTD 278
            LL +       +   +  E+ SI D  +I  ILT 
Sbjct: 61  QLLEKNYRIHCSVHNIIIPEDFSIAD--KIQQILTS 94


>gi|307091998|gb|ADN28334.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 114

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D ++  ++  ++    G  V+++GAG G LT  +   GAR V+ +E D  +   L    
Sbjct: 1   VDRSVAARM--AATVTAGELVLDLGAGTGALTVPMAEAGAR-VVAVEADPVWAEKLAGRL 57

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           ++    +E++  D L V        S P R++AN P+ + T LL   +      P+
Sbjct: 58  AKSGLTVEVVAGDILAVPLP-----SEPYRVVANPPFGVTTALLRRLLDQPERGPY 108


>gi|307091972|gb|ADN28321.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 114

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D ++  ++  ++    G  V+++GAG G LT  L   GAR V+ +E D  +   L    
Sbjct: 1   VDRSVAARM--AATVTAGELVLDLGAGTGALTIPLAEAGAR-VVAVEADPVWAEKLAGRL 57

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           +     +E++  D L V        S P R+ AN P+ + T LL   +      P+
Sbjct: 58  AGSSLTVEVVAGDILAVPLP-----SEPFRVAANPPFGVTTALLRRLLDQPERGPY 108


>gi|261332379|emb|CBH15374.1| rRNA dimethyltransferase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 467

 Score = 82.2 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 13/183 (7%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158
           A +V    + +  + + +IANLP+NI T LL  +        + +      L +  Q+EV
Sbjct: 266 AFEVSDRWWSDGDAKLEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEV 325

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            E I A   S H+ RLSVL        ++       ++P   V   ++   P   P+   
Sbjct: 326 AECIIAPAGSIHFSRLSVLCQCFFHTQLLRTFREMTYYPKTAVLGALVTLQPRAVPLLPG 385

Query: 219 LES--LKKITQEAF--GKRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270
           L++  L   T      G+R  T+ ++L++         +L +   +  L   +L+ E+ C
Sbjct: 386 LDAATLIHFTDLLMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTAEEVC 445

Query: 271 RIT 273
           ++ 
Sbjct: 446 KLA 448



 Score = 69.5 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 6   KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59
           K+  LK +    H   + K   GQ F+L+L +  ++A              ++E+G G G
Sbjct: 49  KAEGLKQLFKVPHAGYLAK--YGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGAG 106

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
            LT+ LLT     V+ IE+D++F   L+ I      + +    D L+++  +   
Sbjct: 107 ALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTSGKFQWTNGDVLRINELEIVE 161


>gi|71747126|ref|XP_822618.1| rRNA dimethyltransferase [Trypanosoma brucei TREU927]
 gi|70832286|gb|EAN77790.1| rRNA dimethyltransferase, putative [Trypanosoma brucei]
          Length = 467

 Score = 82.2 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 13/183 (7%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158
           A +V    + +  + + +IANLP+NI T LL  +        + +      L +  Q+EV
Sbjct: 266 AFEVSDRWWSDGDAKLEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEV 325

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            E I A   S H+ RLSVL        ++       ++P   V   +I   P   P+   
Sbjct: 326 AECIIAPAGSIHFSRLSVLCQCFFHTQLLRTFREMTYYPKTAVLGALITLQPRAVPLLPG 385

Query: 219 LES--LKKITQEAF--GKRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270
           L++  L   T      G+R  T+ ++L++         +L +   +  L   +L+ E+ C
Sbjct: 386 LDAATLIHFTDLLMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTTEEVC 445

Query: 271 RIT 273
           ++ 
Sbjct: 446 KLA 448



 Score = 69.1 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 6   KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59
           K+  LK +    H   + K   GQ F+L+L +  ++A              ++E+G G G
Sbjct: 49  KAEGLKQLFKVPHAGYLAK--YGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGAG 106

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
            LT+ LLT     V+ IE+D++F   L+ I      + +    D L+++  +   
Sbjct: 107 ALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTNGKFQWTNGDVLRINELEIVE 161


>gi|33413476|gb|AAM97535.1| ErmC [Trypanosoma brucei]
          Length = 467

 Score = 82.2 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 13/183 (7%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158
           A +V    + +  + + +IANLP+NI T LL  +        + +      L +  Q+EV
Sbjct: 266 AFEVSDRWWSDGDAKLEVIANLPFNIITELLMRYAVDCSRKQNLFVFGRVPLHVFTQQEV 325

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            E I A   S H+ RLSVL        ++       ++P   V   +I   P   P+   
Sbjct: 326 AECIIAPAGSIHFSRLSVLCQCFFHTQLLRTFREMTYYPKTAVLGALITLQPRAVPLLPG 385

Query: 219 LES--LKKITQEAF--GKRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270
           L++  L   T      G+R  T+ ++L++         +L +   +  L   +L+ E+ C
Sbjct: 386 LDAATLIHFTDLLMRPGQRGMTVYKALQQHVPPEVAQYMLQELRTDGALTVLDLTTEEVC 445

Query: 271 RIT 273
           ++ 
Sbjct: 446 KLA 448



 Score = 69.5 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 6   KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59
           K+  LK +    H   + K   GQ F+L+L +  ++A              ++E+G G G
Sbjct: 49  KAEGLKQLFKVPHAGYLAK--YGQRFILNLKLTHQVAALLSRTTLRTPDKLLLELGPGAG 106

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
            LT+ LLT     V+ IE+D++F   L+ I      + +    D L+++  +   
Sbjct: 107 ALTRSLLTRPCVGVLGIEQDERFNGHLEQIRQYTSGKFQWTNGDVLRINELEIVE 161


>gi|147121|gb|AAA24306.1| 6-m-2 A methyltransferase [Escherichia coli str. K-12 substr.
          W3110]
          Length = 62

 Score = 82.2 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 3  MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
          MNN+ H           + +K  GQNFL D  ++  I  +     G  ++EIG G   LT
Sbjct: 1  MNNRVHQ--------GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALT 52

Query: 63 QMLLTL 68
          + +   
Sbjct: 53 EPVGER 58


>gi|297720837|ref|NP_001172781.1| Os02g0122900 [Oryza sativa Japonica Group]
 gi|255670560|dbj|BAH91510.1| Os02g0122900 [Oryza sativa Japonica Group]
          Length = 131

 Score = 81.8 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            +++++ S  + +P+K +GQN++L+  + +++  ++G  +G  V+EIG G G+LT  LL 
Sbjct: 50  STIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLD 109

Query: 68  LGARKVIVIEK 78
            GA  V  +EK
Sbjct: 110 AGA-TVFAVEK 119


>gi|15897649|ref|NP_342254.1| dimethyladenosine transferase [Sulfolobus solfataricus P2]
 gi|284174975|ref|ZP_06388944.1| dimethyladenosine transferase [Sulfolobus solfataricus 98/2]
 gi|6015727|emb|CAB57554.1| rRNA N-6 methyl transferase [Sulfolobus solfataricus P2]
 gi|13813916|gb|AAK41044.1| rRNA adenine N-6-methyltransferase (erm/ksgA) [Sulfolobus
           solfataricus P2]
 gi|261602418|gb|ACX92021.1| ribosomal RNA adenine methylase transferase [Sulfolobus
           solfataricus 98/2]
          Length = 194

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 33/191 (17%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            ++EIG G GN+T+ L        I IE D +    LK           ++  DA  +  
Sbjct: 7   PILEIGCGKGNITRFL-----EPDICIELDDKMIEYLK--------NFNLVIADARYLPV 53

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
            +        +++++LPY I +      I  +        LTL+ QK+  ++I    N  
Sbjct: 54  LR-------GQLVSSLPYQITSDFFKEVIKLNN----IRKLTLILQKDFVDKIF---NDS 99

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229
            Y  +S L  +     +   I P  F P PKV S +  F             L  I++  
Sbjct: 100 TY--ISFLLNYIYNIQIKDIIPPSCFSPRPKVYSIITIFNRIREYDKEVDSILSCISR-- 155

Query: 230 FGKRRKTLRQS 240
              R KTLR++
Sbjct: 156 --YRNKTLRKA 164


>gi|312100661|ref|XP_003149435.1| hypothetical protein LOAG_13883 [Loa loa]
 gi|307755400|gb|EFO14634.1| hypothetical protein LOAG_13883 [Loa loa]
          Length = 120

 Score = 81.4 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L +  ++  I E S      TV E+G+G GNLT +L+   A+KVI  E D++    
Sbjct: 54  GQHILKNPGVVNAIVEKSAIKATDTVFEVGSGTGNLTVVLME-KAKKVIACEIDRRMIAE 112

Query: 86  LKDIS 90
           LK   
Sbjct: 113 LKKRV 117


>gi|322502902|emb|CBZ37984.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 463

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 6   KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59
           K+  +K +    H   + K    Q F+L+L +  ++               ++E+G G G
Sbjct: 30  KAEGIKQLYKVPHAGFLAK--YDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVG 87

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
           +LT+ LLT     V+ IE D++F P L+ I S   N+ + +  D LKVD  +    + P 
Sbjct: 88  SLTRSLLTRPCVGVLGIEVDERFSPHLEQIRSYTSNKFQWVTADVLKVDELELLKSAFPH 147

Query: 120 RIIANL 125
            + AN+
Sbjct: 148 FVKANI 153



 Score = 73.3 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 25/189 (13%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158
           A  V    + N ++ + +IANLP+ I T LL  +          +      + +  Q+EV
Sbjct: 244 AFDVTNYWWSNGNAKVEVIANLPFEIITELLMRYAVDCSQHRGLFAFGRVPVHVFTQREV 303

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            ERI A   S  + RLSVL        +        ++P  +V   ++   P   P+   
Sbjct: 304 AERILAPAGSVQFSRLSVLCQCFFHVRLKQTFLDQTYYPRTEVEGAMLTLEPRSVPLAHG 363

Query: 219 LES--LKKIT--------QEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENL 264
           L++  L   T        + A      T+ +SL R     L    L +  ++  +   +L
Sbjct: 364 LDASTLIHFTNLLMKPGLRAA------TVHKSLSRFAPAELVHYMLQELRMDGAMTVLDL 417

Query: 265 SIEDFCRIT 273
           S+ +  R+ 
Sbjct: 418 SVVEVTRLA 426


>gi|126307164|ref|XP_001377347.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 414

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 97/283 (34%), Gaps = 56/283 (19%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
             V+E   G   +T  LL  G  +VI +E+D+ F P L+ + +    +LE+I  D    D
Sbjct: 117 QVVLENRPGM--ITSALLNAG-LQVIALERDRTFLPYLESLKNHLNGQLEVIYCDFFSRD 173

Query: 109 FEKFFNISSPIRIIANLPYNIG---------------------------TRLLFNWISAD 141
                  + P      L  N G                            + L++  S  
Sbjct: 174 PSNNRATTPPPLFTETLFKNFGIREIPWEADVPVKIVGFFPVKNERSALWKFLYDLYSCS 233

Query: 142 TWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD--ISPHVFFP 197
           +   +   E    + +KE  ++I ++ +   Y  LSVL     +  ++    +S  V F 
Sbjct: 234 SIYDYGRIELNMFISEKEY-KKIISKPDEKFYQPLSVLCQTAYEIKLLHMEPLSSFVTFK 292

Query: 198 SPKVTS-----------TVIHFIPHLNPI-----PCCLESLKKITQEAFGKRRKT----L 237
           S K  S             I   P  N       P    +   + ++ F  +RK     L
Sbjct: 293 SGKFQSFKCKESKNKHLNFIRLTPRRNLFTDNLTPMNSCNFMYLVKQCFT-KRKYKLIDL 351

Query: 238 RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
             S       +LL Q     +    +L  E+F  +  +L  ++
Sbjct: 352 FNSWSICNKGDLLQQLNRNKHDPVGSLEPEEFKYLFEVLESSE 394


>gi|213028963|ref|ZP_03343410.1| dimethyladenosine transferase [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 61

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           +K  GQNFL D  ++  I  +     G  ++EIG G   LT+ +      K+ VIE D+
Sbjct: 2  ARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DKLTVIELDR 60

Query: 81 Q 81
           
Sbjct: 61 D 61


>gi|146100568|ref|XP_001468894.1| rRNA dimethyltransferase [Leishmania infantum]
 gi|134073263|emb|CAM71986.1| putative rRNA dimethyltransferase [Leishmania infantum JPCM5]
          Length = 463

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 6   KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59
           K+  +K +    H   + K    Q F+L+L +  ++               ++E+G G G
Sbjct: 30  KAEGIKQLYKVPHAGFLAK--YDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVG 87

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
           +LT+ LLT     V+ IE D++F P L+ I S   N+ + +  D LKVD  +    + P 
Sbjct: 88  SLTRSLLTRPCVGVLGIEVDERFSPHLEQIRSYTSNKFQWVTADVLKVDELELLKSAFPH 147

Query: 120 RIIANL 125
            + AN+
Sbjct: 148 FVKANI 153



 Score = 72.9 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 25/189 (13%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158
           A  V    + N ++ + +IANLP+ I T LL  +          +      + +  Q+EV
Sbjct: 244 AFDVTNYWWSNGNAKVEVIANLPFEIITELLMRYAVDCSQHRGLFAFGRVPVHVFTQREV 303

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            ERI A   S  + RLSVL        +        ++P  +V   ++   P   P+   
Sbjct: 304 AERILAPAGSVQFSRLSVLCQCFFHVRLKQTFLDQTYYPRTEVEGAMLTLEPRSVPLAHG 363

Query: 219 LES--LKKIT--------QEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENL 264
           L++  L   T        + A      T+ +SL R     L    L +  ++  +   +L
Sbjct: 364 LDASTLIHFTNLLMKPGLRAA------TVHKSLSRFAPAELVHYMLQELRMDGAMTVLDL 417

Query: 265 SIEDFCRIT 273
           S+ +  R+ 
Sbjct: 418 SVVEVTRLA 426


>gi|71400767|ref|XP_803154.1| rRNA dimethyltransferase [Trypanosoma cruzi strain CL Brener]
 gi|70865852|gb|EAN81708.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi]
          Length = 482

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158
           A  V    + +  + + ++ANLP+++ T LL  +        + +      L +  QKE+
Sbjct: 268 AFAVTDRWWSDGDAKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEI 327

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-- 216
            ERI A   S H+ RLSVL        +        ++P  +V   ++   P   P+   
Sbjct: 328 AERIIAPAGSIHFSRLSVLCQCFFHVQVRQTFREMTYYPKTEVLGAMLTLQPRSVPLVPG 387

Query: 217 CCLESLKKITQEAFG--KRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270
               +L   T       +R  T+ ++L +         +L +  ++  L   +L+ E+ C
Sbjct: 388 MDAATLIHFTDVLMKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEIC 447

Query: 271 RIT 273
           ++ 
Sbjct: 448 KLA 450



 Score = 72.5 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 27  QNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           Q F+L+L +  +I               ++E+G G G LT+ LLT     V+ IE D++F
Sbjct: 91  QRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGTGALTRSLLTRPCVAVLGIEADERF 150

Query: 83  FPILKDISSQHPNRLEIIQDDALKVD 108
              L+ I      +   +  D L+V+
Sbjct: 151 NAHLEQIRQYTDGKFHWVNADVLRVN 176


>gi|15609125|ref|NP_216504.1| methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|15841466|ref|NP_336503.1| rRNA adenine N-6-methyltransferase, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|31793167|ref|NP_855660.1| methyltransferase [Mycobacterium bovis AF2122/97]
 gi|148661799|ref|YP_001283322.1| putative rRNA adenine N-6-methyltransferase [Mycobacterium
           tuberculosis H37Ra]
 gi|148823202|ref|YP_001287956.1| methyltransferase [Mycobacterium tuberculosis F11]
 gi|167970487|ref|ZP_02552764.1| hypothetical methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|215404208|ref|ZP_03416389.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|215411680|ref|ZP_03420476.1| methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|215427345|ref|ZP_03425264.1| methyltransferase [Mycobacterium tuberculosis T92]
 gi|215430906|ref|ZP_03428825.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|215446198|ref|ZP_03432950.1| methyltransferase [Mycobacterium tuberculosis T85]
 gi|218753706|ref|ZP_03532502.1| methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|219557950|ref|ZP_03537026.1| methyltransferase [Mycobacterium tuberculosis T17]
 gi|224990365|ref|YP_002645052.1| methyltransferase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798962|ref|YP_003031963.1| methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|254364806|ref|ZP_04980852.1| hypothetical methyltransferase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551011|ref|ZP_05141458.1| methyltransferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186962|ref|ZP_05764436.1| methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|260201089|ref|ZP_05768580.1| methyltransferase [Mycobacterium tuberculosis T46]
 gi|260205267|ref|ZP_05772758.1| methyltransferase [Mycobacterium tuberculosis K85]
 gi|289443479|ref|ZP_06433223.1| methyltransferase [Mycobacterium tuberculosis T46]
 gi|289447606|ref|ZP_06437350.1| methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289554234|ref|ZP_06443444.1| methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289570086|ref|ZP_06450313.1| methyltransferase [Mycobacterium tuberculosis T17]
 gi|289574662|ref|ZP_06454889.1| methyltransferase [Mycobacterium tuberculosis K85]
 gi|289746067|ref|ZP_06505445.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289750568|ref|ZP_06509946.1| methyltransferase [Mycobacterium tuberculosis T92]
 gi|289754091|ref|ZP_06513469.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289758101|ref|ZP_06517479.1| methyltransferase [Mycobacterium tuberculosis T85]
 gi|289762144|ref|ZP_06521522.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294996920|ref|ZP_06802611.1| methyltransferase [Mycobacterium tuberculosis 210]
 gi|297634559|ref|ZP_06952339.1| methyltransferase [Mycobacterium tuberculosis KZN 4207]
 gi|297731547|ref|ZP_06960665.1| methyltransferase [Mycobacterium tuberculosis KZN R506]
 gi|298525486|ref|ZP_07012895.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776222|ref|ZP_07414559.1| methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|306780003|ref|ZP_07418340.1| methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|306784753|ref|ZP_07423075.1| methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|306789110|ref|ZP_07427432.1| methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|306793444|ref|ZP_07431746.1| methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|306797828|ref|ZP_07436130.1| methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|306803708|ref|ZP_07440376.1| methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|306808282|ref|ZP_07444950.1| methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|306968106|ref|ZP_07480767.1| methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|306972331|ref|ZP_07484992.1| methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|307080041|ref|ZP_07489211.1| methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|307084616|ref|ZP_07493729.1| methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|313658880|ref|ZP_07815760.1| methyltransferase [Mycobacterium tuberculosis KZN V2475]
 gi|1403467|emb|CAA98396.1| PROBABLE METHYLTRANSFERASE [Mycobacterium tuberculosis H37Rv]
 gi|13881706|gb|AAK46317.1| rRNA adenine N-6-methyltransferase, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|31618759|emb|CAD96863.1| PROBABLE METHYLTRANSFERASE [Mycobacterium bovis AF2122/97]
 gi|134150320|gb|EBA42365.1| hypothetical methyltransferase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505951|gb|ABQ73760.1| putative rRNA adenine N-6-methyltransferase [Mycobacterium
           tuberculosis H37Ra]
 gi|148721729|gb|ABR06354.1| hypothetical methyltransferase [Mycobacterium tuberculosis F11]
 gi|224773478|dbj|BAH26284.1| methyltransferase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320465|gb|ACT25068.1| methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|289416398|gb|EFD13638.1| methyltransferase [Mycobacterium tuberculosis T46]
 gi|289420564|gb|EFD17765.1| methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289438866|gb|EFD21359.1| methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289539093|gb|EFD43671.1| methyltransferase [Mycobacterium tuberculosis K85]
 gi|289543840|gb|EFD47488.1| methyltransferase [Mycobacterium tuberculosis T17]
 gi|289686595|gb|EFD54083.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289691155|gb|EFD58584.1| methyltransferase [Mycobacterium tuberculosis T92]
 gi|289694678|gb|EFD62107.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289709650|gb|EFD73666.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713665|gb|EFD77677.1| methyltransferase [Mycobacterium tuberculosis T85]
 gi|298495280|gb|EFI30574.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308215334|gb|EFO74733.1| methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308327107|gb|EFP15958.1| methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308330486|gb|EFP19337.1| methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308334320|gb|EFP23171.1| methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308338121|gb|EFP26972.1| methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308341814|gb|EFP30665.1| methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308345301|gb|EFP34152.1| methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308349603|gb|EFP38454.1| methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308354231|gb|EFP43082.1| methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308358209|gb|EFP47060.1| methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308362140|gb|EFP50991.1| methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308365794|gb|EFP54645.1| methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|323719477|gb|EGB28604.1| methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|326903599|gb|EGE50532.1| methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328458717|gb|AEB04140.1| methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 179

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 26/191 (13%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  G + L D    +    ++    G  V +IGAG G LT  L+  GAR V+ +E   +
Sbjct: 8   RRAWGWHRLHDEWAARV-VSAAAVRPGELVFDIGAGEGALTAHLVRAGAR-VVAVELHPR 65

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              +L++        + ++  DA             P R++AN PY I +RLL   ++ +
Sbjct: 66  RVGVLRERFPG----ITVVHADA-----ASIRLPGRPFRVVANPPYGISSRLLRTLLAPN 116

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +     + +       +   +  +  S +  R ++  G          +    F P P V
Sbjct: 117 SGLVAADLV-------LQRALVCKFASRNARRFTLTVGLM--------LPRRAFLPPPHV 161

Query: 202 TSTVIHFIPHL 212
            S V+      
Sbjct: 162 DSAVLVVRRRK 172


>gi|322495324|emb|CBZ30628.1| putative rRNA dimethyltransferase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 464

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 6   KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59
           K+  +K +    H   + K    Q F+L+L +  ++               ++E+G G G
Sbjct: 31  KAEGIKQLYKVPHAGFLAK--YDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVG 88

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
           +LT+ LLT     V+ IE D++F P L+ I +   N+ + +  D LKVD  +  N + P 
Sbjct: 89  SLTRSLLTRPCVGVLGIEVDERFNPHLEQIRNYTNNKFQWVTADVLKVDELELLNSAFPH 148

Query: 120 RIIANL 125
            + AN+
Sbjct: 149 FVKANV 154



 Score = 75.6 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 25/189 (13%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEV 158
           A  V    + N ++ + +IANLP+ I T LL  + +        +      + +  Q+EV
Sbjct: 245 AFDVTNHWWSNGNAKVEVIANLPFEIITELLMRYAADCSQHRGLFAFGRVPVHVFTQREV 304

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            ERI A   S  + RLSVL        +        ++P  +V   ++   P   P+   
Sbjct: 305 AERILAPAGSVQFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAHG 364

Query: 219 LES--LKKIT--------QEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENL 264
           L++  L   T        + A      T+ +SL R     L    L +  ++  +   +L
Sbjct: 365 LDASTLIHFTNLLMKPGLRAA------TVHKSLSRFAPAELVQYMLQELRMDGAMTVLDL 418

Query: 265 SIEDFCRIT 273
           S+ +  R+ 
Sbjct: 419 SVVEVTRLA 427


>gi|71411035|ref|XP_807784.1| rRNA dimethyltransferase [Trypanosoma cruzi strain CL Brener]
 gi|70871858|gb|EAN85933.1| rRNA dimethyltransferase, putative [Trypanosoma cruzi]
          Length = 482

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158
           A  V    + +  + + ++ANLP+++ T LL  +        + +      L +  QKE+
Sbjct: 268 AFAVTDRWWSDGDAKVEVVANLPFDVITELLMRYAVDCSRKQNLFVFGRVPLHVFTQKEI 327

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-- 216
            ERI A   S H+ RLSVL        +        ++P  +V   ++   P   P+   
Sbjct: 328 AERIIAPAGSIHFSRLSVLCQCFFHVQVRQTFREMTYYPKTEVLGAMLTLQPRSVPLVPG 387

Query: 217 CCLESLKKITQEAFG--KRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFC 270
               +L   T       +R  T+ ++L +         +L +  ++  L   +L+ E+ C
Sbjct: 388 MDAATLIHFTDLLMKPGQRGMTVHKALMKCVPAEVAQYMLQELRVDGALTVLDLTAEEIC 447

Query: 271 RIT 273
           ++ 
Sbjct: 448 KLA 450



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 27  QNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           Q F+L+L +  +I               ++E+G G G LT+ LLT     V+ IE D++F
Sbjct: 91  QRFILNLKLTHQIVSHLSRTTLKTHDKLLVELGPGTGALTRSLLTRPCVAVLGIEADERF 150

Query: 83  FPILKDISSQHPNRLEIIQDDALKVD 108
              L+ I      +   +  D L+V+
Sbjct: 151 NAHLEQIRQYTDGKFHWVNADVLRVN 176


>gi|254232160|ref|ZP_04925487.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C]
 gi|124601219|gb|EAY60229.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C]
          Length = 150

 Score = 79.9 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 25/167 (14%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
             G  V +IGAG G LT  L+  GAR V+ +E   +   +L++        + ++  DA 
Sbjct: 2   RPGELVFDIGAGEGALTAHLVRAGAR-VVAVELHPRRVGVLRERFPG----ITVVHADA- 55

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
                       P R++AN PY I +RLL   ++ ++     + +       +   +  +
Sbjct: 56  ----ASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLV-------LQRALVCK 104

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
             S +  R ++  G          +    F P P V S V+      
Sbjct: 105 FASRNARRFTLTVGLM--------LPRRAFLPPPHVDSAVLVVRRRK 143


>gi|307091984|gb|ADN28327.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 114

 Score = 79.5 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
              ++   +    G  V+EIGAGPG +T  L   G R +I IE D ++   L++   +HP
Sbjct: 4   TANRLVAEAAFEPGDLVVEIGAGPGAITFALARRGLR-IIAIEPDPEWAKRLRERVGEHP 62

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            R+ I+  D L ++         P R++ +LP+   T +L   +    
Sbjct: 63  -RIRIVNADFLSIELPA-----EPFRVVGSLPFGRTTDMLRRLLDDPR 104


>gi|311894003|dbj|BAJ26411.1| hypothetical protein KSE_05680 [Kitasatospora setae KM-6054]
          Length = 202

 Score = 79.5 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 1/123 (0%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
               ++ +GQ+FL    I  ++ E +G   G  V+E+GAG G L+  +   G  ++  +E
Sbjct: 23  DFRARRDLGQHFLRSPGIATRLLELAGLHAGDAVLEVGAGLGTLSAAVARAG-HRIWAVE 81

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           KD +    L      +  R   +  D   VD ++   + +    I    + +   +  + 
Sbjct: 82  KDPRVAEALCAALEPYGERARPLLSDVRAVDLDRELPVGTVFLSILPFDWPLAFGIAAHV 141

Query: 138 ISA 140
             +
Sbjct: 142 FGS 144


>gi|72547154|ref|XP_843186.1| rRNA dimethyltransferase [Leishmania major strain Friedlin]
 gi|323363700|emb|CBZ12705.1| putative rRNA dimethyltransferase [Leishmania major strain
           Friedlin]
          Length = 464

 Score = 79.5 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 6   KSHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPG 59
           K+  +K +    H   + K    Q F+L+L +  ++               ++E+G G G
Sbjct: 31  KAEGIKQLYKVPHAGFLAK--YDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVG 88

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
           +LT+ LLT     V+ IE D++F P L+ I +   N+ + +  D LKVD  +    + P 
Sbjct: 89  SLTRSLLTRPCVGVLGIEVDERFNPHLEQIRNYTNNKFQWVTADVLKVDELELLKSAFPH 148

Query: 120 RIIANL 125
            + AN+
Sbjct: 149 FVKANI 154



 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 25/189 (13%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-----ADTWPPFWESLTLLFQKEV 158
           A  V   ++ N ++ + +IANLP+ I T LL  + +        +      + +  Q+EV
Sbjct: 245 AFDVTNHRWSNGNAKVEVIANLPFEIITELLMRYAADCSQHRGLFAFGRVPIHVFTQREV 304

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--P 216
            ERI A   S  + RLSVL        +        ++P  +V   ++   P   P+   
Sbjct: 305 AERILAPAGSVQFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAHG 364

Query: 217 CCLESLKKIT--------QEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENL 264
               SL   T        + A      T+ +SL R     L    L +  ++  +   +L
Sbjct: 365 LSASSLIHFTNLLMKPGLRAA------TVHKSLSRFAPAELVQYMLQELRMDGAMTVLDL 418

Query: 265 SIEDFCRIT 273
           S+ +  R+ 
Sbjct: 419 SVVEVTRLA 427


>gi|307091896|gb|ADN28283.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 79.1 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KD 88
           +D ++ +++A + G   G  V ++GAG G LT  L   GAR V+ +E D  +   L  + 
Sbjct: 1   VDRSLARRMAATVG--AGELVFDLGAGTGALTIPLARAGAR-VVSVEADPTWADRLLGRL 57

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           + +     +E++  D L V        S P R+++N PY I T LL   +      P+  
Sbjct: 58  VGAGLSGNVELVVGDILDVPLP-----SEPYRVVSNPPYGITTALLRRLLERPERGPYRA 112

Query: 149 SL 150
            L
Sbjct: 113 DL 114


>gi|270593172|ref|ZP_06221463.1| dimethyladenosine transferase [Haemophilus influenzae HK1212]
 gi|270318418|gb|EFA29543.1| dimethyladenosine transferase [Haemophilus influenzae HK1212]
          Length = 66

 Score = 79.1 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 214 PIPC-CLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRI 272
           P P   L  L ++  +AF +RRKTLR +L  L     L   GI+ N RAENL+I D+ R+
Sbjct: 2   PHPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFSPENLTALGIDLNARAENLAIADYARL 61

Query: 273 TN 274
            N
Sbjct: 62  AN 63


>gi|307091940|gb|ADN28305.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 79.1 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDI 89
           +DLN+L+ I  ++       V+E+G G G+LT  L L  GA  V  +E D    P+ + I
Sbjct: 1   IDLNLLELIVRTAELDSSDAVLEVGTGTGSLTSQLALRSGA--VCTVEIDTGLAPVARQI 58

Query: 90  SSQHPNRLEIIQDDAL------------KVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
             +  N +  +  D L              D     +  +  +++ANLPY+I T L+ N 
Sbjct: 59  VGESHN-VRFVHADCLSKKSLLNPEMLTAWDEVAAKHRCTRRKLVANLPYSIATPLISNL 117

Query: 138 ISADTWPPFWESLT 151
           + A         + 
Sbjct: 118 LVAGIPIERMVVMV 131


>gi|552002|gb|AAA26876.1| ermAM protein A [Plasmid pAM-beta-1]
          Length = 94

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
              QNFL    +L +I +     +  TV EIG G G+LT  L  + +++V  IE D   F
Sbjct: 6   KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF 64

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFE 110
             L     +   R+ +I  D L+  F 
Sbjct: 65  N-LSSEKLKLNTRVTLIHQDILQFQFP 90


>gi|26224788|gb|AAN76364.1| putative adenine rRNA methylase [Mycobacterium microti]
          Length = 146

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 25/167 (14%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
             G  V +IGAG G LT  L+  GAR V+ +E   +   +L++        + ++  DA 
Sbjct: 1   RPGELVFDIGAGEGALTAHLVRAGAR-VVAVELHPRRVGVLRERFPG----ITVVHADA- 54

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
                       P R++AN PY I +RLL   ++ ++     + +       V   +  +
Sbjct: 55  ----ASIRLPGRPFRVVANPPYGISSRLLRTVVAPNSGLVAADLV-------VQRALVCK 103

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212
             S +  R ++  G          +    F P P V S V+      
Sbjct: 104 FASRNARRFTLTVGLM--------LPRRAFLPPPHVDSAVLVVRRRK 142


>gi|117558557|gb|AAI27364.1| tfb2m protein [Xenopus (Silurana) tropicalis]
          Length = 323

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 52/240 (21%)

Query: 29  FLLDLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           F+ D ++ K   +         +G  ++E   GPG LTQ LL  GAR V+ +E ++ F P
Sbjct: 87  FIGDPSMAKTFLKCLQPWDDRGNGPIILECDPGPGILTQTLLAAGAR-VVALESNKDFLP 145

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL----------- 133
            L+ + +    +LE++  D  K+D      +  P+   + L  ++               
Sbjct: 146 SLQLLENNMDGQLEVVHCDFFKLDPLGHGTMQPPVMYSSVLFNSLCIPEAPWIKDVPFKV 205

Query: 134 ----------------LFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLS 175
                           ++N    ++   +   E    + +K+  + ++   +  +Y  LS
Sbjct: 206 FGILPQKNESTFLWKQIYNLFERNSIYRYGRIELNVFISEKQYTKLVSQPGDMRNYQALS 265

Query: 176 VLTGWRTKATMM-------------FD---ISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
            L        ++             F    I   V  P+  +   ++   P  +     L
Sbjct: 266 ALFQASCDIQLLHMEPWSSFLTPLRFKGAAIPRSVIVPNDHL--CLVRITPRRDLFTDSL 323


>gi|317505058|ref|ZP_07963005.1| dimethyladenosine transferase [Prevotella salivae DSM 15606]
 gi|315663836|gb|EFV03556.1| dimethyladenosine transferase [Prevotella salivae DSM 15606]
          Length = 70

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
          +  KK++GQ+FL DLNI K+IA++  +   I ++EIG G G LTQ L+T  
Sbjct: 4  VRAKKHLGQHFLTDLNIAKRIADTVDACPAIPILEIGPGMGVLTQYLVTKN 54


>gi|114452124|gb|ABI75036.1| erythromycin resistance protein [uncultured bacterium]
          Length = 123

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           + +I  +        +IEIG+G G+ T  L       V  IE D +   I K+   ++ N
Sbjct: 2   INEILRNVHLNTNDNIIEIGSGKGHFTFELAKRC-NYVTAIEIDPKLCRITKNKLIEYEN 60

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
             ++I  D L+  F K    +   +I  N+PYNI T ++   +   T    +  +   F 
Sbjct: 61  -FQVINKDILQFKFPK----NKSYKIFGNIPYNISTDIIRKIVFESTATESYLIVEYGFA 115

Query: 156 KEVGER 161
           K +   
Sbjct: 116 KRLLNT 121


>gi|323477450|gb|ADX82688.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           HVE10/4]
          Length = 198

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 35/210 (16%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            ++EIG G GN+T+ L        I IE D++    LK           ++  DA  +  
Sbjct: 7   PILEIGCGKGNITKFL-----EPDICIELDEKMIDYLK--------NYNLVIADARYLPI 53

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
            +        +++++LPY I +      +  D        L L+ QK+  ++I       
Sbjct: 54  LR-------GQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKILNDP--- 99

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229
               +S L  +         I P  F P PKV S +  F             +  I++  
Sbjct: 100 --TYISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVFNRVREYNDDVDSLISCISR-- 155

Query: 230 FGKRRKTLRQS--LKRLGGENLLHQAGIET 257
              R KTL+ +  L  L  +N L     + 
Sbjct: 156 --YRNKTLKNASKLCGLSSDNNLKVREFKP 183


>gi|227830361|ref|YP_002832141.1| dimethyladenosine transferase [Sulfolobus islandicus L.S.2.15]
 gi|284997867|ref|YP_003419634.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           L.D.8.5]
 gi|227456809|gb|ACP35496.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           L.S.2.15]
 gi|284445762|gb|ADB87264.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           L.D.8.5]
          Length = 198

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 78/210 (37%), Gaps = 35/210 (16%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            ++EIG G GN+T+ L        I IE D++    LK           ++  DA  +  
Sbjct: 7   PILEIGCGKGNITKFL-----EPDICIELDEKMTDYLK--------NYNLVIADARYLPI 53

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
            +        +++++LPY I +      +  D        L L+ QK+  ++I       
Sbjct: 54  LR-------GQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKILNDP--- 99

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229
               +S L  +     +   I P  F P PKV S +  F             +  I++  
Sbjct: 100 --TYISFLLNYVFDIQIKDIIPPRCFSPRPKVYSIITVFNRVREYNDDVDSLISCISR-- 155

Query: 230 FGKRRKTLRQS--LKRLGGENLLHQAGIET 257
              R KTL+ +  L  L  +N L     + 
Sbjct: 156 --YRNKTLKNASKLCGLSSDNNLKVRDFKP 183


>gi|8671851|gb|AAF78414.1|AC009273_20 Identical to dimethyladenosine transferase from Arabidopsis
           thaliana gb|AF051326. It contains ribosomal RNA adenine
           dimethylases PF|00398. This gene is cut off
          Length = 87

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 201 VTSTVIHFI---PHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG----ENLLHQA 253
           V + V+ F    P   P     ++   +   AF  +RK LR+SL+ +      E  L  A
Sbjct: 2   VDAAVVTFKLKHPRDYPDVSSTKNFFSLVNSAFNGKRKMLRKSLQHISSSPDIEKALGVA 61

Query: 254 GIETNLRAENLSIEDFCRITNILT 277
           G+    R E L+++DF ++ N++ 
Sbjct: 62  GLPATSRPEELTLDDFVKLHNVIA 85


>gi|226876725|gb|ACO89583.1| Erm(41) [Mycobacterium bolletii]
          Length = 173

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 23/190 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  G   L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E    
Sbjct: 7   RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   ++    + + + D L   + +      P R++A+ PY++ + L+ + ++ +
Sbjct: 65  RARHLRSRFAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYHVTSALIRSLLTPE 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +      +  L+ Q+ V           H  R  V   W  +A +   +    F   P+V
Sbjct: 118 S---RLLAADLVLQRGVV--------HKHAKRAPVR-HWTLRAGI--TLPRSAFHHPPQV 163

Query: 202 TSTVIHFIPH 211
            S+V+     
Sbjct: 164 DSSVLVIRRR 173


>gi|154344495|ref|XP_001568189.1| rRNA dimethyltransferase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065526|emb|CAM43293.1| putative rRNA dimethyltransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 469

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 25/189 (13%)

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158
           A  V    + N ++ + +IANLP+ I T LL  +          +      + +  Q+EV
Sbjct: 246 AFDVTNHWWSNGNAKVEVIANLPFAIITELLMRYAVDCAQHRGLFAFGRVPVHIFAQREV 305

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
            ERI A   S  + RLSVL        +        ++P  +V   ++   P   P+   
Sbjct: 306 AERILAPAGSVEFSRLSVLCQCFFHVRLKQTFVDQTYYPRTEVEGAMLTLEPRSVPLAHD 365

Query: 219 LES--LKKIT--------QEAFGKRRKTLRQSLKRLGGENL----LHQAGIETNLRAENL 264
           L++  L   T        + A      T+ +SL R     L    L +  ++  +   +L
Sbjct: 366 LDASTLIHFTNLLMKPGLRAA------TVHKSLSRFAPAELVQYMLQELRMDGAMTVLDL 419

Query: 265 SIEDFCRIT 273
           S+ +  R+ 
Sbjct: 420 SVVEVTRLA 428



 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 8/125 (6%)

Query: 7   SHSLKTILS--HYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGN 60
           +  +K +    H   + K    Q F+L+L +  ++               ++E+G G G 
Sbjct: 33  AEGIKQLYKVPHAGFLAK--YDQRFMLNLKLTHQLVSYLSRTTLTTPDKVLVELGPGVGT 90

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LT+ LLT     V+ +E D++F P L+ I +    + + +  D LKVD  +    + P  
Sbjct: 91  LTRSLLTRPCVGVLGVEVDERFNPHLEQIRNYTNQKFQWVTADVLKVDELELLRSAFPHF 150

Query: 121 IIANL 125
           + AN+
Sbjct: 151 VKANM 155


>gi|260831178|ref|XP_002610536.1| hypothetical protein BRAFLDRAFT_65703 [Branchiostoma floridae]
 gi|229295903|gb|EEN66546.1| hypothetical protein BRAFLDRAFT_65703 [Branchiostoma floridae]
          Length = 448

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 104/324 (32%), Gaps = 59/324 (18%)

Query: 6   KSHSLKTILSHYK--IIPKKYMGQN-FLLDLNILKKIAESSGSLDG--ITVIEIGAGPGN 60
              S + ++  +       K   +N ++LD  +   + +  G L      + E+  GPG 
Sbjct: 94  PLPSTEELVRKHGCLRRAFKSRIKNKYILDPALAAVVVDHLGDLSENKQWIFELNPGPGV 153

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           +T+ LL  GA +++++E D+ F P    ++    + + +   D  ++D      I  P  
Sbjct: 154 VTRELLAAGASRILILENDRVFLPYSMALAKHVRDIVHVKYADFFRIDPMGDGVIKQPAI 213

Query: 121 IIANLPYNIGTR-------------------------LLFNWISADTWPPFWE-SLTLLF 154
               L   I                            L +  +   +   +    L L  
Sbjct: 214 SSVELFNKIQPAHWKEEVVVRVVGMLSQEKEKTHLRHLCYRILERSSLFEYGRMELNLFI 273

Query: 155 QKEVGERITAQKNSPH--YGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS--------- 203
            ++V   ITA        Y   S+L        ++    P+  F   +V           
Sbjct: 274 TEKVYNMITAPPGVDLVIYESTSILCQACFDIQLLLK-EPNSRFLPVQVKGQTTYKHKAN 332

Query: 204 ---------TVIHFIPHLNPI-----PCCLESLKKITQEAFGKRRKTLRQSLKRL--GGE 247
                     ++   P          P        + ++   K R  L   ++    G  
Sbjct: 333 ADRFVNDHMCLVRLTPKAALFDQGLTPQNGSQFIFLVRQLMAKPRAKLTDRMEIWVPGSL 392

Query: 248 NLLHQAGIETNLRAENLSIEDFCR 271
           N+L   G+  ++RA +LS   F +
Sbjct: 393 NILSDLGLRPDMRAGDLSPAQFMK 416


>gi|197112113|gb|ACH43059.1| ribosome methyltransferase [Mycobacterium abscessus]
          Length = 173

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 81/190 (42%), Gaps = 23/190 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  G   L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E    
Sbjct: 7   RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   ++    + I + D L   + +      P R++A+ PY + + L+ + ++ +
Sbjct: 65  RARHLRSRFAEED--VRIAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPE 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +      +  L+ Q+    +   +         +++  W  +A +   +    F   P+V
Sbjct: 118 S---RLLAADLVLQRGAVHKHAKR---------ALVRHWTLRAGI--TLPRSAFHHPPQV 163

Query: 202 TSTVIHFIPH 211
            S+V+     
Sbjct: 164 DSSVLVIRRR 173


>gi|167947511|ref|ZP_02534585.1| dimethyladenosine transferase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 74

 Score = 76.4 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 206 IHFIPHLNPIPCCLES--LKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263
           +   P   P     +     ++  +AF +RRKTLR SL+       +  AG++  +R E 
Sbjct: 1   VRLEPFSEPPLAIEDQPLFAQLVAQAFSQRRKTLRNSLRNWLTAEQIEAAGVDPTIRPEQ 60

Query: 264 LSI 266
           LS+
Sbjct: 61  LSL 63


>gi|226876711|gb|ACO89576.1| Erm(41) [Mycobacterium abscessus]
          Length = 173

 Score = 76.4 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 81/190 (42%), Gaps = 23/190 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  G   L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E    
Sbjct: 7   RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   ++    + + + D L   + +      P R++A+ PY + + L+ + ++ +
Sbjct: 65  RARHLRSRFAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPE 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +      +  L+ Q+    +   +         +++  W  +A +   +    F   P+V
Sbjct: 118 S---RLLAADLVLQRGAVHKHAKR---------ALVRHWTLRAGI--TLPRSAFHHPPQV 163

Query: 202 TSTVIHFIPH 211
            S+V+     
Sbjct: 164 DSSVLVIRRR 173


>gi|226876713|gb|ACO89577.1| Erm(41) [Mycobacterium abscessus]
          Length = 173

 Score = 76.4 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E        L+  
Sbjct: 15  LTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPGRARHLRSR 72

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
            ++    + + + D L   + +      P R++A+ PY + + L+ + ++ ++      +
Sbjct: 73  FAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPES---RLLA 122

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
             L+ Q+    +   +         +++  W  +A +   +    F   P+V S+V+   
Sbjct: 123 ADLVLQRGAVHKHAKR---------ALVRHWTLRAGI--TLPRSAFHHPPQVDSSVLVIR 171

Query: 210 PH 211
             
Sbjct: 172 RR 173


>gi|115949552|ref|XP_001179159.1| PREDICTED: similar to transcription factor B1, mitochondrial,
           partial [Strongylocentrotus purpuratus]
          Length = 86

 Score = 76.4 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           KI   +G+L G  V E+G GPG +T+ ++  G + ++VIEKD +F P L+ ++     R+
Sbjct: 1   KIVRQAGNLQGAHVCEVGPGPGGITRSIINQGVQDLLVIEKDTRFIPSLEMLTEATEGRV 60

Query: 98  EIIQDDALKVDFEKFFN 114
            +  DD L+V+    F 
Sbjct: 61  RVACDDILRVNLADAFP 77


>gi|169629383|ref|YP_001703032.1| methyltransferase [Mycobacterium abscessus ATCC 19977]
 gi|169241350|emb|CAM62378.1| Probable methyltransferase [Mycobacterium abscessus]
 gi|196127896|gb|ACG70212.1| Erm(41) [Mycobacterium abscessus]
 gi|196127900|gb|ACG70215.1| Erm(41) [Mycobacterium abscessus]
 gi|197112122|gb|ACH43065.1| ribosome methyltransferase [Mycobacterium abscessus]
 gi|226876709|gb|ACO89575.1| Erm(41) [Mycobacterium abscessus ATCC 19977]
          Length = 173

 Score = 76.0 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 23/190 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  G   L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E    
Sbjct: 7   RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   ++    + I + D L   + +      P R++A+ PY + + L+ + ++ +
Sbjct: 65  RARHLRSRFAEED--VRIAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPE 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +      +  L+ Q+             H  R  V   W  +A +   +    F   P+V
Sbjct: 118 S---RLLAADLVLQRGAV--------HKHAKRAPVR-HWTLRAGI--TLPRSAFHHPPQV 163

Query: 202 TSTVIHFIPH 211
            S+V+     
Sbjct: 164 DSSVLVIRRR 173


>gi|307091926|gb|ADN28298.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 75.6 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 17/136 (12%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +DLN++  I+ ++       V+E+G G G+LT  L    A +V+ IE D+ F P+ +   
Sbjct: 1   IDLNLIDLISRTAEPSKADAVLEVGTGTGSLTARLAAE-AGQVVTIEIDRTFQPVAQQTV 59

Query: 91  SQHPNRLEIIQDDAL----KVDFEKFFNISS--------PIRIIANLPYNIGTRLLFNWI 138
               N +  +  D L    +++ E                 +++ANLPY I T L+ N +
Sbjct: 60  GPREN-MTYLLGDCLAKKSELNPEMLATWDEAAAKPGITTRKLVANLPYVIATPLISNLL 118

Query: 139 SADTWPPFWESLTLLF 154
            ++      E +  + 
Sbjct: 119 CSEIP---IERMVFMV 131


>gi|227827664|ref|YP_002829444.1| dimethyladenosine transferase [Sulfolobus islandicus M.14.25]
 gi|229584868|ref|YP_002843370.1| dimethyladenosine transferase [Sulfolobus islandicus M.16.27]
 gi|238619835|ref|YP_002914661.1| dimethyladenosine transferase [Sulfolobus islandicus M.16.4]
 gi|227459460|gb|ACP38146.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           M.14.25]
 gi|228019918|gb|ACP55325.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           M.16.27]
 gi|238380905|gb|ACR41993.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           M.16.4]
 gi|323474722|gb|ADX85328.1| rRNA adenine methylase transferase [Sulfolobus islandicus REY15A]
          Length = 198

 Score = 75.6 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 35/210 (16%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            ++EIG G GN+T+ L        I IE D++    LKD          ++  DA  +  
Sbjct: 7   PILEIGCGKGNITKFL-----EPDICIELDEKMTDYLKD--------YNLVIADARYLPI 53

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
            +        +++++LPY I +      +  D        L L+ QK+  ++I       
Sbjct: 54  LR-------GQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKILNDP--- 99

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229
               +S L  +         I P  F P PKV S +  F             +  I++  
Sbjct: 100 --TYISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVFNRVREYNDDVDSLISCISR-- 155

Query: 230 FGKRRKTLRQS--LKRLGGENLLHQAGIET 257
              R KTL+ +  L  L  +N L     + 
Sbjct: 156 --YRNKTLKNASKLCGLSSDNNLKVREFKP 183


>gi|197112119|gb|ACH43063.1| ribosome methyltransferase [Mycobacterium abscessus]
          Length = 173

 Score = 75.6 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 23/190 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  G   L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E    
Sbjct: 7   RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   ++    + + + D L   + +      P R++A+ PY + + L+ + ++ +
Sbjct: 65  RARHLRSRFAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPE 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +      +  L+ Q+    +   +    H+         R   T+        F   P+V
Sbjct: 118 S---RLLAADLVLQRGAVHKHAKRAPVRHWT-------LRAGITL----PRSAFHHPPQV 163

Query: 202 TSTVIHFIPH 211
            S+V+     
Sbjct: 164 DSSVLVIRRR 173


>gi|197112116|gb|ACH43061.1| ribosome methyltransferase [Mycobacterium abscessus]
          Length = 173

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 23/190 (12%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           ++  G   L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E    
Sbjct: 7   RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+   ++    + + + D L   + +      P R++A+ PY + + L+ + ++  
Sbjct: 65  RARHLRSRFAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPQ 117

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +      +  L+ Q+             H  R  V   W  +A +   +    F   P+V
Sbjct: 118 S---RLLAADLVLQRGAV--------HKHAKRAPVR-HWTLRAGI--TLPRSAFHHPPQV 163

Query: 202 TSTVIHFIPH 211
            S+V+     
Sbjct: 164 DSSVLVIRRR 173


>gi|229579179|ref|YP_002837577.1| dimethyladenosine transferase [Sulfolobus islandicus Y.G.57.14]
 gi|229582069|ref|YP_002840468.1| dimethyladenosine transferase [Sulfolobus islandicus Y.N.15.51]
 gi|228009893|gb|ACP45655.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012785|gb|ACP48546.1| ribosomal RNA adenine methylase transferase [Sulfolobus islandicus
           Y.N.15.51]
          Length = 198

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 35/210 (16%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            ++EIG G GN+T+ L        I IE D++    LK           ++  DA  +  
Sbjct: 7   PILEIGCGKGNITKFL-----EPDICIELDEKMTDYLK--------NYNLVIADARYLPI 53

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP 169
            +        +++++LPY I +      +  D        L L+ QK+  ++I       
Sbjct: 54  LR-------GQLVSSLPYQITSDFFKEVVKLDN----ISKLILILQKDFVDKILNDP--- 99

Query: 170 HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA 229
               +S L  +         I P  F P PKV S +  F             +  I++  
Sbjct: 100 --TYISFLLNYVFDIQTKDIIPPRCFSPRPKVYSIITVFNRVREYNDDVDSLISCISR-- 155

Query: 230 FGKRRKTLRQS--LKRLGGENLLHQAGIET 257
              R KTL+ +  L  L  +N L     + 
Sbjct: 156 --YRNKTLKNASKLCGLSSDNNLKVREFKP 183


>gi|307091982|gb|ADN28326.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 14/133 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +DLN++  +  S+       V+EIG G G+LT  L  L A  V+ +E D  F  + K+  
Sbjct: 1   IDLNLVDFVVRSAELDRSDLVLEIGTGTGSLTAHLARL-AGSVLSVEIDPSFHQLAKETI 59

Query: 91  SQHPNRLEIIQDDALKVDFE----------KFFNISSP--IRIIANLPYNIGTRLLFNWI 138
            +  + + +I  D L+              +  +   P  ++++ANLPY + T ++ N +
Sbjct: 60  GETSH-VRLIHADVLENKNHLNPEVLTALREMMDTYQPQRLKLVANLPYAVATPVIANLL 118

Query: 139 SADTWPPFWESLT 151
             D        + 
Sbjct: 119 MTDLDIERMVVMV 131


>gi|226876715|gb|ACO89578.1| Erm(41) [Mycobacterium abscessus]
          Length = 173

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 75/176 (42%), Gaps = 22/176 (12%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
             +I   SG   G  V+++GAG G LT  L+  GAR V+ +E        L+   ++   
Sbjct: 20  AARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPGRARHLRSRFAEED- 77

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            + + + D L   + +      P R++A+ PY + + L+ + ++ ++      +  L+ Q
Sbjct: 78  -VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPES---RLLAADLVLQ 128

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           +    +   +         +++  W  +A +   +    F   P+V S+V+     
Sbjct: 129 RGAVHKHAKR---------ALVRHWTLRAGI--TLPRSAFHHPPQVDSSVLVIRRR 173


>gi|229820415|ref|YP_002881941.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae
           DSM 12333]
 gi|229566328|gb|ACQ80179.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae
           DSM 12333]
          Length = 196

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LE 98
            + +G   G TV+++GAG G LT  L+  GAR VI +E   +    ++ +  +   R + 
Sbjct: 24  VDRAGVEHGDTVLDLGAGAGALTGPLVDRGAR-VIALE---RHAGRVQRLRERFDGRSVS 79

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +++ D            + P R++AN P+++   ++ + + A         L     + +
Sbjct: 80  VVEADI-----RDLRLPARPFRVVANPPFHLARPIVADLLGARLLVRADLVLRHDTARNL 134

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
                                          I    F PSP V + V+     
Sbjct: 135 ARAHADDPRWV--------------VETTLAIPRTAFEPSPSVDALVLTLRRR 173


>gi|307091936|gb|ADN28303.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEI 99
           ++    G  V+++GAG G LT  L   GAR V+ +E D  +   L      ++    +E+
Sbjct: 10  AATVHAGELVLDLGAGTGALTIPLARAGAR-VVAVEADPVWAEKLSGRLAGARLSGTVEL 68

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +  D L     +    S P R+++N P+ + T LL   +      P+   L
Sbjct: 69  VVGDIL-----ELSLPSEPYRVVSNPPFGVTTALLRRLLEPPERGPYRADL 114


>gi|207108392|ref|ZP_03242554.1| dimethyladenosine transferase [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 78

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
          ++ KK +GQ+FL D + L +I  +   L+ + +IEIG G G+LT  LL     K    E 
Sbjct: 2  VVAKKSLGQHFLTDESFLDRIVNALPPLNPLKLIEIGVGLGDLTLKLLDRYPLKTY--EI 59

Query: 79 DQQFFPILKDISSQHPNRL 97
          D      ++          
Sbjct: 60 DSNLCEKMRSKLKAQKKAF 78


>gi|196127903|gb|ACG70217.1| Erm(41) [Mycobacterium abscessus]
 gi|197112128|gb|ACH43069.1| ribosome methyltransferase [Mycobacterium abscessus]
          Length = 173

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 75/182 (41%), Gaps = 23/182 (12%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E        L+  
Sbjct: 15  LTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPGRARHLRSR 72

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
            ++    + + + D L   + +      P R++A+ PY + + L+ + ++ ++      +
Sbjct: 73  FAEED--VRVAEADLLAFRWPR-----RPFRVVASPPYQVTSALIRSLLTPES---RLLA 122

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
             L+ Q+    +   +    H+         R   T+        F   P+V S+V+   
Sbjct: 123 ADLVLQRGAVHKHAKRAPVRHWT-------LRAGITL----PRSAFHHPPQVDSSVLVIR 171

Query: 210 PH 211
             
Sbjct: 172 RR 173


>gi|315425087|dbj|BAJ46759.1| dimethyladenosine transferase [Candidatus Caldiarchaeum
           subterraneum]
 gi|315428047|dbj|BAJ49635.1| dimethyladenosine rRNA methyltransferase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 242

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 25/221 (11%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D  ++  +  ++       V+++GAG G L        ARKV  +E+D   +  L
Sbjct: 3   QHFLVDRAVVMHLVVAAELGSEDVVLDVGAGTGVL-AFEAAKFARKVYAVERDPILYKTL 61

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
            + + ++ N +E ++ + L++    +       +I+AN P+++   L+   +        
Sbjct: 62  SEKAKEYGN-VEPVRGNILRLRLPAY------TKIVANPPFSLLEPLIIRHLRNPV---- 110

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
             +++LL  K   + I   +       +   T      +        V  P      + +
Sbjct: 111 --TMSLLTPKHFADSILTPE-----TAIGFKTHLSYAVSEKAVYDGSVCEPPYIGKLSHV 163

Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
              P           +  +      +R   +R SL+ +  +
Sbjct: 164 LLKPVQRTALQDAMVMFLL------QRGSKVRNSLRNVLWK 198


>gi|293333490|ref|NP_001168088.1| hypothetical protein LOC100381822 [Zea mays]
 gi|223945939|gb|ACN27053.1| unknown [Zea mays]
          Length = 170

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT-AQKNS 168
           EK+       ++ +NLP+N+ T ++   +        +  + L+ Q E   R+  A   S
Sbjct: 3   EKYGATKKLAKVASNLPFNVSTEVVKLLL---PMGDVFSVVVLMLQDETAVRLADASIQS 59

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH---LNPIPCCLESLKKI 225
           P Y  ++V   + ++    F +    FFP PKV   VI F        P     +S   +
Sbjct: 60  PEYRSINVFVDFYSEPEYKFRVDRENFFPRPKVDGAVISFKLKNAEEYPPVSSPKSFFSM 119

Query: 226 T 226
            
Sbjct: 120 V 120


>gi|307091866|gb|ADN28268.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 17/136 (12%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +DLN+L  I  ++G      VIE+G+G G LT       A  V+ +E D  F+ + ++  
Sbjct: 1   IDLNLLDVIINAAGLSKDDLVIEVGSGTGGLTAR-HVEEAGAVLSVEIDPAFYQLTQETI 59

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSP------------IRIIANLPYNIGTRLLFNWI 138
            +   R+ +I  D L+   +    +  P            ++++ANLPY + T ++ N++
Sbjct: 60  RE-SERVVLINADVLETKNKLNPEVLEPLARLRESSGLKRLKLVANLPYAVATPVISNFL 118

Query: 139 SADTWPPFWESLTLLF 154
             D     ++ + ++ 
Sbjct: 119 LTDLP---FDRMVVMV 131


>gi|315426853|dbj|BAJ48474.1| dimethyladenosine rRNA methyltransferase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 248

 Score = 73.7 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 25/221 (11%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL+D  ++  +  ++       V+++GAG G L        ARKV  +E+D   +  L
Sbjct: 9   QHFLVDRAVVMHLVVAAELGSEDVVLDVGAGTGVL-AFEAAKFARKVYAVERDPILYKTL 67

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
            + + ++ N +E ++ + L++    +       +I+AN P+++   L+   +        
Sbjct: 68  SEKAKEYGN-VEPVRGNILRLRLPAY------TKIVANPPFSLLEPLIIRHLRNPV---- 116

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
             +++LL  K   + I   +       +   T      +        V  P      + +
Sbjct: 117 --TMSLLTPKHFADSILTPE-----TAIGFKTHLSYAVSEKAVYDGSVCEPPYIGKLSHV 169

Query: 207 HFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
              P           +  +      +R   +R SL+ +  +
Sbjct: 170 LLKPVQRTALQDAMVMFLL------QRGSKVRNSLRNVLWK 204


>gi|307091918|gb|ADN28294.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 73.3 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 10/112 (8%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  ++  I       DG  +IE+GAG G LT  L  LG R +  +E D +    L+  ++
Sbjct: 2   DRRVINTIVAVVARTDG-PIIEVGAGDGALTLALQKLG-RPLTAVEIDARRAACLEKRTA 59

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
                  I+  D L     +     +   I+ NLP+++ T +L   +    W
Sbjct: 60  PSS---RIVDADFLHYQLPR-----TRHIIVGNLPFHLTTAMLRRILHGPGW 103


>gi|328699806|ref|XP_003241051.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
           [Acyrthosiphon pisum]
          Length = 352

 Score = 73.3 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 193 HVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE---- 247
             F P P V   V+   P   PI     + ++K+ +  F  R+K   + ++ L  +    
Sbjct: 216 RAFIPKPNVDVGVVRLTPLKKPIIDLPFDIIEKVIRSVFNFRQKHCIRGVETLFPKPVRE 275

Query: 248 ----NLLHQAGIETNLRAENLSIEDFCRITNIL 276
                LL  A IE + R   L++ +F RI+   
Sbjct: 276 QLASELLTAAAIEPSTRPFQLTVSEFGRISEAY 308


>gi|189462315|ref|ZP_03011100.1| hypothetical protein BACCOP_03001 [Bacteroides coprocola DSM 17136]
 gi|189430969|gb|EDU99953.1| hypothetical protein BACCOP_03001 [Bacteroides coprocola DSM 17136]
          Length = 200

 Score = 73.3 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 77/198 (38%), Gaps = 24/198 (12%)

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               L+ + S   N ++++  D       KF     P ++++N+PY I + + F  +  +
Sbjct: 1   MVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMFE 53

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +   F    +++ Q E  +++ ++     Y   +V         +++++ P  FFP P V
Sbjct: 54  SLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFFPPPTV 109

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLHQ 252
            S +++            +   K    AF            KT L+   ++    ++  +
Sbjct: 110 KSALLNIKRKQ----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISEK 165

Query: 253 AGIETNLRAENLSIEDFC 270
            G+  N +   LS   + 
Sbjct: 166 FGLNLNAQIVCLSPSQWV 183


>gi|307091878|gb|ADN28274.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 72.9 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 14/133 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +DLN++  I  ++       V+E+G G G+LT   +   A  ++ +E D+ F P+ +++ 
Sbjct: 1   IDLNLIDLIGRTAELSKADAVLEVGTGTGSLTAR-MASEAGMIVTVEIDRSFAPVAQEVI 59

Query: 91  SQHPNRLEIIQDDAL------------KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
            +  N +  +  D L              D           +++ANLPY I T L+ N +
Sbjct: 60  GRRGN-VRHVFGDCLAKKSELNPSMLAAWDEAAKLPGIKHRKLVANLPYVIATPLISNLL 118

Query: 139 SADTWPPFWESLT 151
            +D        + 
Sbjct: 119 CSDIPIERMVVMV 131


>gi|307091912|gb|ADN28291.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 72.9 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  ++  + E     DG  ++E+GAG G LT  L  LG R +  IE D +    L   +
Sbjct: 1   HDRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLGKRT 58

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           S       ++  D L+    +     +P  I+ NLP+++ T +L   +    W
Sbjct: 59  SAST---RVVDADFLQYRLPR-----APHVIVGNLPFHLTTAMLRRILHGPAW 103


>gi|307091874|gb|ADN28272.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 72.5 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 10/122 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KD 88
           +D  + +++ E+ G   G  V+++GAG G LT  L   GAR V+ +E D  +   L  + 
Sbjct: 1   VDRFLARRMVETVG--AGELVLDLGAGTGALTIPLAQAGAR-VVAVEADPVWAERLFGQL 57

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           + +     +E++  D L+V        S P R+++N PY I T LL   +      P+  
Sbjct: 58  VGAGLSGMVELVVGDMLEVPLP-----SEPYRVVSNPPYGITTALLRRLLELPERGPYRA 112

Query: 149 SL 150
            L
Sbjct: 113 DL 114


>gi|307568921|emb|CBX23401.1| ErmF protein [Bacteroides fragilis]
 gi|307568923|emb|CBX23402.1| ErmF protein [Bacteroides fragilis]
          Length = 191

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 77/201 (38%), Gaps = 24/201 (11%)

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D      L+ + S   N ++++  D       KF     P ++++N+PY I + + F  +
Sbjct: 1   DTALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKIL 53

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             ++   F    +++ Q E  +++ ++     Y   +V         +++++ P  F P 
Sbjct: 54  MFESLGNFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFLPP 109

Query: 199 PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENL 249
           P V S +++            +   K    AF            KT L+   ++    ++
Sbjct: 110 PTVKSALLNIKRKH----LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSI 165

Query: 250 LHQAGIETNLRAENLSIEDFC 270
             + G+  N +   LS   + 
Sbjct: 166 SEKFGLNLNAQIVCLSPSQWL 186


>gi|213620904|ref|ZP_03373687.1| dimethyladenosine transferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 53

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 233 RRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
           RRKT+R SL  L     L + GI+  +RAEN+S+  +C++ N L++N  +
Sbjct: 1   RRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPL 50


>gi|195054200|ref|XP_001994014.1| GH22567 [Drosophila grimshawi]
 gi|193895884|gb|EDV94750.1| GH22567 [Drosophila grimshawi]
          Length = 473

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 99/268 (36%), Gaps = 53/268 (19%)

Query: 32  DLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPI 85
           +  I  +I              TV+EI  GPG+ T+ LL   +  R++I+IE+ + F P 
Sbjct: 64  NTQIADEINAHLQPHLQHTKCDTVLEINPGPGHFTRHLLDRESQFRRLILIEQMEHFMPR 123

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN-----WISA 140
           L+++ + +P+R+++ Q D + +    F +       ++ L  ++  R            A
Sbjct: 124 LQELHALYPDRVKVRQGDFIGIWKLAFMDKMDSGTRLSELLSDVPQRAFNEDVNMLVFGA 183

Query: 141 DTWPPFWESLT--LLFQKEVG-----ERITAQK-------------NSPHYGRLSVLTGW 180
               PF++ L   L+FQ  +      E I A                   Y   SVL   
Sbjct: 184 VGSYPFFKHLINSLIFQTSIFNLGRCEMILALPPPIFTHLSCSNEIGYLIYRSASVLFQI 243

Query: 181 RTKATMMFDISPHVFFPS------------PKVTST------VIHFIPHLNPIPC----C 218
             +   +  +    F P+             KV S       ++ F+P  N         
Sbjct: 244 LFEHQFIALVPRESFLPAQADHNVSKGSKLGKVKSINPEYLYLVKFVPRRNLHEICPIQD 303

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGG 246
           L +L    ++ F  RR  +  +L++   
Sbjct: 304 LPALWFFIKQNFVSRRNRIIPNLEKWVP 331


>gi|70944826|ref|XP_742302.1| dimethyladenosine transferase [Plasmodium chabaudi chabaudi]
 gi|56521203|emb|CAH74779.1| dimethyladenosine transferase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 149

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 9/114 (7%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            DG  +IE+G G G L++ L     + +  IE D +   I+           + I DD L
Sbjct: 44  NDGKGIIELGCGLGQLSKYLFK-KYKNMTAIEIDSRALAIISRTMPG----FDFIHDDVL 98

Query: 106 KVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           ++++++   N ++ + +I NLP+ I +++LF  +    +  + E   +  Q EV
Sbjct: 99  QINYKELSINKNTKLSVIGNLPFYITSQILFCLL---DFYKYIEQAVVTIQYEV 149


>gi|307091954|gb|ADN28312.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307091968|gb|ADN28319.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307091970|gb|ADN28320.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 116

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEI 99
           ++    G  V+++GAG G LT  L   GAR V+ +E D  +   L      ++    +E+
Sbjct: 10  AATVHAGELVLDLGAGTGALTIPLARAGAR-VVAVEADPVWAEKLSGRLAGARLSGTVEL 68

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +  D L     +    S P R+++N P+ + T L+   +      P+   L
Sbjct: 69  VVRDIL-----ELSLPSEPYRVVSNPPFGVTTALMRRLLEPSERGPYRADL 114


>gi|149003645|ref|ZP_01828510.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69]
 gi|147758377|gb|EDK65377.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS69]
          Length = 73

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 223 KKITQEAFGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIEDFCRIT 273
            K+++ +F  RRKTL  +L    G+           L QAG+  ++R E LS+ +F  + 
Sbjct: 6   FKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLA 65

Query: 274 NILT 277
           + L 
Sbjct: 66  DALK 69


>gi|195394850|ref|XP_002056052.1| GJ10435 [Drosophila virilis]
 gi|194142761|gb|EDW59164.1| GJ10435 [Drosophila virilis]
          Length = 471

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 92/268 (34%), Gaps = 53/268 (19%)

Query: 32  DLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPI 85
           +  I ++I +            TV+E+  GPG  T+ LL      RK+I+IE  + F P 
Sbjct: 63  NAQIAQQINDCLEPHLGQTKCDTVLELNPGPGYFTKHLLDRETQFRKIILIESMEHFMPR 122

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSP----IRIIANLPYNI------------ 129
           L+++ + +P+R+++   D + +    F +        + ++++ P               
Sbjct: 123 LQELHALYPDRVKVRHGDFIALWKLAFMDKMDSGTRLVDLLSDAPQRAFNEDANMLVFGA 182

Query: 130 --GTRLLFNWISA-------DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
                   + I++         W      L L     +    + +     Y   SVL   
Sbjct: 183 VGSYPFFKHLINSLIFQTSLYNWGRCEMILALPPPIYIHLTCSNEIGYLIYRSASVLFQI 242

Query: 181 RTKATMMFDISPHVFFPS------------PKVTST------VIHFIPHLNP----IPCC 218
             +   +  +    F P              KV S       ++ F+P  N         
Sbjct: 243 LFEYRFIAKLPRESFLPVQTDYNISKGSKLAKVRSINPEYLYLVKFVPRRNLHEICPVQD 302

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRLGG 246
           L +L    ++ F  RR  +  +L++   
Sbjct: 303 LPALWYFIKQNFVSRRNRIIPNLEKWVP 330


>gi|118412484|gb|ABK81675.1| ribosomal methylase [Streptococcus uberis]
          Length = 140

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118
           G+LT  L  + +++V  IE D   F  L     +   R+ +I  D L+      F     
Sbjct: 1   GHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQR 54

Query: 119 IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
            +I+ N+PY++ T+++   +        +  +   F K   +          +  L +L 
Sbjct: 55  YKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---------HRTLGLLL 105

Query: 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
             +     +  +    F P PKV S +I    
Sbjct: 106 HTQVSIQQLLKLPAECFHPKPKVNSVLIKLTR 137


>gi|313621076|gb|EFR92165.1| dimethyladenosine transferase [Listeria innocua FSL S4-378]
          Length = 81

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGGE---------NLLHQAGIETNLRAENLSIED 268
             E   ++T+ +F +RRKTL  +L                 L+  GI+   R E L I +
Sbjct: 7   DEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKEELVEGLNAIGIDLIRRGETLDIPE 66

Query: 269 FCRITNILTD 278
           F +++N L D
Sbjct: 67  FAKLSNFLAD 76


>gi|307091872|gb|ADN28271.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 69.5 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 14/133 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +DLN++  I  ++       V+E+G G G+LT  L+   A +++ IE D  F P+ + + 
Sbjct: 1   IDLNLIDLIGTTAELTSADAVLEVGTGTGSLTARLVKE-AGQIVSIEIDTAFAPVARQVV 59

Query: 91  SQHPNRLEIIQDDA-----------LKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWI 138
            +  N ++ +Q D            LK           +  +++ANLPY I   L+ N +
Sbjct: 60  GEREN-VKYLQGDCLAKKSELNPAMLKAWDAAARKPGITTRKLVANLPYVIAMPLISNLL 118

Query: 139 SADTWPPFWESLT 151
            +D        + 
Sbjct: 119 CSDIPIERMVVMV 131


>gi|301300206|ref|ZP_07206418.1| dimethyladenosine transferase domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852147|gb|EFK79819.1| dimethyladenosine transferase domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 136

 Score = 69.5 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +++   D + VIEIG   G LT+ L    A +V+  E D +  PIL D      N + ++
Sbjct: 2   DTAEIDDQVNVIEIGPDIGALTEFLTERAA-EVMAFEIDYRLVPILADTLRDFDN-VIVV 59

Query: 101 QDDALKVD 108
            +D LKVD
Sbjct: 60  NEDILKVD 67


>gi|326392388|ref|ZP_08213803.1| ribosomal RNA adenine methylase transferase [Thermoanaerobacter
          ethanolicus JW 200]
 gi|325991572|gb|EGD50149.1| ribosomal RNA adenine methylase transferase [Thermoanaerobacter
          ethanolicus JW 200]
          Length = 59

 Score = 69.5 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 25/44 (56%)

Query: 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           GQNF+ D NIL KI  +SG      V+EIG G G LT+ L   
Sbjct: 12 WGQNFIFDKNILAKIVTASGVASEDFVLEIGTGLGTLTEELAKR 55


>gi|189459634|ref|ZP_03008419.1| hypothetical protein BACCOP_00260 [Bacteroides coprocola DSM 17136]
 gi|189433656|gb|EDV02641.1| hypothetical protein BACCOP_00260 [Bacteroides coprocola DSM 17136]
          Length = 204

 Score = 69.1 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 72/186 (38%), Gaps = 23/186 (12%)

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           P   +++  D       KF     P ++++N+PY I + + F  +  ++   F    +++
Sbjct: 16  PEMFQVVGCDFRNFAVPKF-----PFKVVSNIPYGITSDI-FKILMFESLGNFL-GGSIV 68

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213
            Q E  +++ ++     Y   +V         +++++ P  FFP P V S +++      
Sbjct: 69  LQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGPESFFPPPTVKSALLNIKRKQ- 124

Query: 214 PIPCCLESLKKITQEAFGK--------RRKT-LRQSLKRLGGENLLHQAGIETNLRAENL 264
                 +   K    AF            KT L+   ++    ++  + G+  N +   L
Sbjct: 125 ---LFFDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISEKFGLNLNAQIVCL 181

Query: 265 SIEDFC 270
           S   + 
Sbjct: 182 SPSQWV 187


>gi|307091922|gb|ADN28296.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 68.7 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 10/113 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  ++  I E     DG  + E+GAG G LT  L  LG R +  IE D +    L   +
Sbjct: 1   HDRGVIDTIVEIVAHTDG-PIFEVGAGDGELTAPLQRLG-RPLTAIEIDARRAARLDKRT 58

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           +       ++  D L        ++     I+ NLP+++ T +L   +    W
Sbjct: 59  AVTT---RVVDADFLHYRLPLAEHV-----IVGNLPFHLTTAMLRRILHGPGW 103


>gi|114452118|gb|ABI75033.1| erythromycin resistance protein [uncultured bacterium]
          Length = 121

 Score = 68.7 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +I  D L+  
Sbjct: 1   DTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ 58

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
               F      +I  N+PYN+ T+++   +        +  +   F K   + 
Sbjct: 59  ----FPNKQRYKIFGNIPYNLSTKIIKKVVFESHASDIYLIVEEGFYKRTLDI 107


>gi|331087256|ref|ZP_08336326.1| hypothetical protein HMPREF0987_02629 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408942|gb|EGG88403.1| hypothetical protein HMPREF0987_02629 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 94

 Score = 68.3 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 206 IHFIPHLNPIP--CCLESLKKITQEAFGKRRKTLRQSLK--------RLGGENLLHQAGI 255
           I    H  P       + + +I + +F +RRKTL   LK        R G E  + + G 
Sbjct: 2   IRLECHEEPPVQVKDEKLMFRIIRASFNQRRKTLANGLKNSPEISLSREGIEQAIAELGK 61

Query: 256 ETNLRAENLSIEDFCRITNIL 276
             ++R E L++E+F  ++NI+
Sbjct: 62  GASVRGEALNLEEFATLSNIV 82


>gi|307091994|gb|ADN28332.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 108

 Score = 68.3 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D  I+  +  +    D   ++E+GAG G +T  LL    R V  +E D      L+   
Sbjct: 1   VDPRIIAAMVNAL-PSDSAPILELGAGDGAVTWALLQAD-RAVTAVELDSNRVAALRRRH 58

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
                R  ++  D L +  E      S   +++N+P+ I T LL + +    W
Sbjct: 59  P----RAMVVAGDMLDIRLE------SNHHVVSNVPFGITTPLLRHLLPQQHW 101


>gi|114452116|gb|ABI75032.1| erythromycin resistance protein [uncultured bacterium]
          Length = 121

 Score = 68.3 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            TV EIG G G+LT  L  + +++V  IE D   F  L     +   R+ +I  D L+  
Sbjct: 1   DTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ 58

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
               F      +I+ ++PY++ T+++   +        +  +   F K   + 
Sbjct: 59  ----FPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI 107


>gi|330948591|gb|EGH48851.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 74

 Score = 68.3 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
              + Q DALK DF         +R++ NLPYNI T L+F+ +   +       +  + Q
Sbjct: 3   NFNLHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNAS---LIRDMHFMLQ 59

Query: 156 KEVGERITAQKN 167
           KEV ER+ A   
Sbjct: 60  KEVVERMAAGPG 71


>gi|307091986|gb|ADN28328.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 108

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D  I+  +  +    D   ++E+GAG G +T  L   G R V  +E D      L+   
Sbjct: 1   VDPRIIAAMVNAL-PSDSAPILELGAGDGAVTWALFQAG-RAVTAVELDSNRVAALRRRH 58

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
                R  ++  D L +  E      S   +++N+P+ I T LL + +    W
Sbjct: 59  P----RAIVVAGDMLDIRLE------SDHHVVSNVPFGITTPLLRHLLPQQHW 101


>gi|307091888|gb|ADN28279.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  I E      G  ++E+GAG G LT  L  L       IE D +    L   ++ 
Sbjct: 3   RDVIDTIVEIVADTHG-PIVEVGAGDGALTLPLQKL-MHPQTAIEIDSRRAARLGKRTAP 60

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
                 ++  D L+    +     +   I+ NLP+++ T +L   +    W
Sbjct: 61  ST---RVVDADFLQYRLPR-----TQHVIVGNLPFHLTTAMLRRILHGPGW 103


>gi|27436726|gb|AAN86836.1| adenine rRNA methylase [Mycobacterium smegmatis str. MC2 155]
          Length = 100

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           H+    +  +GQNFL D  ++  I E     +G  +IEIGAG G LT  L  L AR +  
Sbjct: 5   HHG---RHELGQNFLSDRRVIADIVEIVSRTNG-PIIEIGAGDGALTIPLQRL-ARPLTA 59

Query: 76  IEKDQQFFPILKDISSQHPNR-----LEIIQDDALKVDFEK 111
           +E D +    L   +++          E++  D L+    +
Sbjct: 60  VEVDARRARRLAQRTARSAPGPASRPTEVVAADFLRYPLPR 100


>gi|326915468|ref|XP_003204039.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like
           [Meleagris gallopavo]
          Length = 360

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 87/276 (31%), Gaps = 58/276 (21%)

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
           PG LT+ LL  G R V+ +E    F   L+ + +    +L++I  D  ++D      +  
Sbjct: 68  PGVLTRTLLNAGVR-VVALESHPAFLSKLQSLENSLDGQLKVIYGDFFRLDPLVTGAVKP 126

Query: 118 PIRIIANLPYNIG---------------------------TRLLFNWISADTWPPF--WE 148
           P      L   +G                            RLLF      +   +   E
Sbjct: 127 PAVCSDKLFEAMGIAAVPWRADVPVKIFGIFPQRKERNTLWRLLFILYECSSIYRYGRVE 186

Query: 149 SLTLLFQKEVGERITAQKNS-PHYGRLSVLTGWRTKATMMFD----------------IS 191
               + +KE  + +TA+      Y  LSVL        ++                  I 
Sbjct: 187 LNIFISEKEY-KVLTAKPGELRIYQALSVLWQAGCDIQLLHMEPWSSFLTNLKNGRLAIP 245

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPI-----PCCLESLKKITQEAFGKRRKTLRQSLKRL-- 244
                P+  +   ++   P  N       P    +   + ++   K R  L   L     
Sbjct: 246 KSTRLPNDHL--CLVRLTPQQNLFTGGLKPANSATFIFMVKQCLTKPRSKLIDRLNSWSL 303

Query: 245 -GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279
              + LL    I   +   N+  ED+ R+   L ++
Sbjct: 304 DNADKLLKALEIPNYIETGNVYPEDYKRLFCALQNS 339


>gi|224130160|ref|XP_002320767.1| predicted protein [Populus trichocarpa]
 gi|222861540|gb|EEE99082.1| predicted protein [Populus trichocarpa]
          Length = 87

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 201 VTSTVIHFIPHLN---PIPCCLESLKK-ITQEAFGKRRKTLRQSLKRLGG----ENLLHQ 252
           V + V+ F        P+    +S    +   AF  +RK LR+SL+ +      E  L  
Sbjct: 2   VDAAVVRFKLKQAVDYPVVSSTKSFFSMVVNSAFNGKRKMLRKSLQHICTPVEIEEALQN 61

Query: 253 AGIETNLRAENLSIEDFCRITNIL 276
            G     R E L+++DF  + N +
Sbjct: 62  VGCLATSRPEELTLDDFVNLHNSI 85


>gi|167947426|ref|ZP_02534500.1| HAD-superfamily hydrolase subfamily IA, variant 3 [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 86

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                + V+E D+     L D  +     L I   DALK DF    +   P+R++ NLPY
Sbjct: 3   RRCGTLQVVELDRDLIGPLADSCATL-GELTIHSADALKFDFTALASPERPLRVVGNLPY 61

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQ 155
           NI T LLF+ +S          +  + Q
Sbjct: 62  NISTPLLFHLLSQAAQ---ISDMHFMLQ 86


>gi|119597557|gb|EAW77151.1| transcription factor B2, mitochondrial, isoform CRA_c [Homo
           sapiens]
          Length = 295

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 86/241 (35%), Gaps = 54/241 (22%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
                ++E   GPG LTQ LL  GA KV+ +E D+ F P L+ + +  P   ++     L
Sbjct: 94  RPPHLLLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLEKLMAD-PGNPDLYH--VL 149

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
            V     + ++  I+++   P+   +  ++        P   E L  L QK    ++   
Sbjct: 150 SV----IWQLACEIKVLHMEPW--SSFDIYTRKGPLENPKRRELLDQLQQKLYLIQM--- 200

Query: 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKI 225
                                   I     F                N  P        +
Sbjct: 201 ------------------------IPRQNLF--------------TKNLTPMNYNIFFHL 222

Query: 226 TQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
            +  FG+R  T+    +SL  L   ++L Q G + + +  N+  +DF  +   +  ++D 
Sbjct: 223 LKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHPQDFKTLFETIERSKDC 282

Query: 283 A 283
           A
Sbjct: 283 A 283


>gi|307091898|gb|ADN28284.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 10/113 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  ++  + E     DG  ++E+GAG G LT  L  LG R +  IE D +    L   +
Sbjct: 1   HDRGVVDTLVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRT 58

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           S       ++  D L+          +P  I+ NLPY++ T +L   +    W
Sbjct: 59  SASS---RVVDADFLQYRLP-----HAPHVIVGNLPYHLTTAMLRRLLHGPGW 103


>gi|118135711|gb|ABK62706.1| ErmB [Lactobacillus salivarius]
          Length = 136

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 14/146 (9%)

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   +++V  IE D   F  L     +   R+ +I  D L+      F      +I+ N+
Sbjct: 3   LAKISKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGNI 57

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY++ T+++   +        +  +   F K   +          +  L +L   +    
Sbjct: 58  PYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQ 108

Query: 186 MMFDISPHVFFPSPKVTSTVIHFIPH 211
            +  +    F P PKV S +I    H
Sbjct: 109 QLLKLPAECFHPKPKVNSVLIKLTRH 134


>gi|195449501|ref|XP_002072099.1| GK22500 [Drosophila willistoni]
 gi|194168184|gb|EDW83085.1| GK22500 [Drosophila willistoni]
          Length = 439

 Score = 65.6 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 53/256 (20%)

Query: 32  DLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPI 85
           +  I K+I              T++E+  G G+ T+ LL      RK+I++E  + F P 
Sbjct: 45  NAEIAKEIDSCIDPHVRESKCDTIMELNPGVGHFTRHLLDREKQFRKIILLESMEHFMPR 104

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR------------L 133
           L ++ + +P R+++   D + +    + +       +A L  ++  R             
Sbjct: 105 LHELHALYPERVKVHHADFVTLWKLAYMDKMDNGSRVAELLNDVPQRAFGEDANMLVFGA 164

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQK-------------NSPHYGRLSVLTGW 180
           + ++             T L+     E I A                   Y   SVL   
Sbjct: 165 VGSYTFFKHLINSIIFQTSLYNLGRCEMILAVPPPIYIHLTCQNDIGYLLYRSTSVLFQI 224

Query: 181 RTKATMMFDISPHVFFPS------------PKVTST------VIHFIPHLNP----IPCC 218
             +   +  +    F P              KV S       ++ F+P  N      P  
Sbjct: 225 LFEHRFIAKVPREHFLPHQADYNVGKSSKLGKVRSINPEYLYLVKFVPRRNLHELCPPDD 284

Query: 219 LESLKKITQEAFGKRR 234
           L +L    ++ F  RR
Sbjct: 285 LTALWFFIKQNFVSRR 300


>gi|307091892|gb|ADN28281.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 107

 Score = 65.2 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            + ++ +   S DG  ++EIGAG G LT  L +LG R+++ ++ D +    L+       
Sbjct: 5   TIDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLRRRLPS-- 60

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             + + + DAL++             ++ N+P++I T +L   ++   W
Sbjct: 61  --VVVRRADALQIRL-------DRPVVVGNIPFHITTPILRRLLATGEW 100


>gi|307091886|gb|ADN28278.1| putative rRNA methyltransferase [uncultured bacterium]
 gi|307091904|gb|ADN28287.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 107

 Score = 65.2 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            + ++ +   S DG  ++EIGAG G LT  L +LG R+++ ++ D +    L+       
Sbjct: 5   TIDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLRRRLPS-- 60

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             + + + DAL++             ++ N+P++I T +L   ++   W
Sbjct: 61  --VVVRRADALQIRL-------DRPVVVGNIPFHITTPILRRLLATGEW 100


>gi|307091924|gb|ADN28297.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 65.2 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 10/113 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            +  ++  + E     DG  + E+GAG G LT  L  LG R +  IE D      L   +
Sbjct: 1   HNRGVIDTMVEIVARTDG-PIFEVGAGDGALTVPLQRLG-RPLTAIEIDAHRAARLDKRT 58

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           +       ++  D L        ++     I+ NLP+++ T +L   +    W
Sbjct: 59  AVTT---RVVDADFLHYRLPLAEHV-----IVGNLPFHLTTAMLRRILHGPGW 103


>gi|307091894|gb|ADN28282.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 107

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            + ++ +   S DG  ++EIGAG G LT  L +LG R+++ ++ D +    L+       
Sbjct: 5   TIDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLRRRLPS-- 60

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             + + + DAL++             ++ N+P++I T +L   ++   W
Sbjct: 61  --VVVRRADALQIRL-------DRPVVVGNIPFHITTPILRRLLTTGEW 100


>gi|307091884|gb|ADN28277.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 107

 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 13/109 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            + ++ +   S DG T +EIGAG G LT  L +LG R+++ ++ D +    L+       
Sbjct: 5   TIDRMVDLVRSTDGPT-LEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLRRRLPS-- 60

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             +++ + DAL++             ++ N+P++I T +L   ++   W
Sbjct: 61  --VDVRRADALQIRL-------DRPVVVGNIPFHITTPVLRRLLATGEW 100


>gi|307091916|gb|ADN28293.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 131

 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +DLN++  I  ++       V+ +G G G+LT  +    A  V+ IE D  F P+ +++ 
Sbjct: 1   IDLNLIDLIGRTAELSKEDAVLGVGTGTGSLTARMAKE-AGMVVTIEIDLTFQPVAQEVV 59

Query: 91  SQHPNRLEIIQDDAL------------KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               N +   + D L              D           +++ANLPY I T L+ N +
Sbjct: 60  GPRGN-VRYARGDCLAKKGELNPKTLEAWDEAARLPGIKKRKLVANLPYVIATPLISNLL 118


>gi|195109498|ref|XP_001999321.1| GI23134 [Drosophila mojavensis]
 gi|193915915|gb|EDW14782.1| GI23134 [Drosophila mojavensis]
          Length = 471

 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 101/286 (35%), Gaps = 56/286 (19%)

Query: 32  DLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPI 85
           +  I ++I +            TV+E+  GPG+ T+ LL      RK+I++E  + F P 
Sbjct: 63  NAQIAEQINDYLEPHLRQTKCDTVMELNPGPGHFTRHLLDRETQFRKIILMESMEYFMPR 122

Query: 86  LKDISSQHPNRLEIIQDDALKVD----FEKFFNISSPIRIIANLPYN------------- 128
           L+++ + +P R+++   D + +      +K  + +  + +++++P               
Sbjct: 123 LQELHALYPERVKVRYGDFIALWKLAYMDKIDSGTRLLDMLSDVPRTSFNDDINMLVFGA 182

Query: 129 IGTRLLFN-----WISADTWPPFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           +G+   F       I   +          L +     +    + +     Y   SVL   
Sbjct: 183 VGSYAFFKHLINSLIFQISLYNLGRCEMILAMPPPIYIHLTCSNKIGYLIYRSASVLFQI 242

Query: 181 RTKATMMFDISPHVFFPS------------PKVTST------VIHFIPHLNP----IPCC 218
             +   +  +    F P              KV S       ++ F+P  N         
Sbjct: 243 LFEHRFIAKVPRETFLPVQADYNLSRSSKLAKVKSINPEYLYLVKFVPRRNLHEICPVQD 302

Query: 219 LESLKKITQEAFGKRRKTLRQSLKRL---GGENLLHQAGIETNLRA 261
           L +L    ++ F  RR  +  +L++     G  L+        +R 
Sbjct: 303 LPALWFFIKQNFVSRRNRIIPNLEKWVPGCGPRLIINQNAPERVRP 348


>gi|307091930|gb|ADN28300.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  ++  + E     DG  ++E+GAG G LT  L  LG R +  IE D +    L   +
Sbjct: 1   HDRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRT 58

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           S       ++  D L+    +     +P  I+ NLP+++ T +L   +    W
Sbjct: 59  SAST---RVVDADFLQYRLPR-----APHVIVGNLPFHLTTAMLRRILHGPAW 103


>gi|298246976|ref|ZP_06970781.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297549635|gb|EFH83501.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-----VIVIEKDQQFFPILKDIS 90
           L++I E +G   G+ V+EIG GPG+ T +L    A +     V  +E   +    L+   
Sbjct: 81  LEQIVERAGVTPGMRVLEIGPGPGHFTTLLARRVAEQGKQGSVTCVELQPEMIARLRQQL 140

Query: 91  SQHP-NRLEIIQDDALKVD 108
            +   N +EI+Q DA ++ 
Sbjct: 141 HREQVNNVEIVQGDAQQLP 159


>gi|307092050|gb|ADN28360.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 117

 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 VIEIG G G L++ +   G   + +IE   +   +L+D        + +I  D 
Sbjct: 15  LDSSDDVIEIGPGLGILSEAIFRHGVHSLTMIELVMRLATVLQDRMRDRRG-VNVINADF 73

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           L +          P++++ANLP+N+ + +L    +          +
Sbjct: 74  LDLRG---LPGDGPLKVVANLPFNVASAILERLCADHARITLMVLM 116


>gi|326436861|gb|EGD82431.1| hypothetical protein PTSG_03076 [Salpingoeca sp. ATCC 50818]
          Length = 593

 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 94/290 (32%), Gaps = 44/290 (15%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK--DQ---QFFP 84
           + +  I    A     LD + ++E        T+ LL  GA+ V ++    D+      P
Sbjct: 293 ITNYGIADAFASLIPGLDKLHIVESNPYTMLFTRALLNHGAKSVTIVTNTGDRQNKHLHP 352

Query: 85  ILKDISSQH-PNRLEIIQDDALKVDFEK-------FFNISS--------PIRIIANLPYN 128
            +          R++++  D  K+D           F+              +       
Sbjct: 353 QVHAFQEALGEKRVKLVHGDMQKLDLPDGCPPSEVLFDDFPSRQWLVRSSFALAGQTNAV 412

Query: 129 IGTRLLFNWI---SADTWPPFWES--LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            G+  +FN +   +  + P  W    +     + + + I +        RL VL      
Sbjct: 413 SGSVFIFNLLYKVAMRSGPFHWGRTAMYFTLPRYLTQHIFSTG-----SRLGVLAQVLCH 467

Query: 184 ATMMFDISPHVFFPSPKVTST-------VIHFIPHLNPIPCCLESL---KKITQEAFGKR 233
              +  +S  +F P  K T          +  IP  +P+    E+      + +      
Sbjct: 468 VNELAAVSRDLFSPRLKCTEGPGAITVHFVELIPRYSPLIPNYETFVVLDFLLRHL-TMT 526

Query: 234 RKTLRQSLKRLGGE--NLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            KT+ ++++ LG +   L     I      + + +  +  +   L   +D
Sbjct: 527 AKTIGKAMRGLGPQFTPLFAMTNINPETPLKKMKVTQYVDLAVALHQWED 576


>gi|156337250|ref|XP_001619836.1| hypothetical protein NEMVEDRAFT_v1g150110 [Nematostella vectensis]
 gi|156203780|gb|EDO27736.1| predicted protein [Nematostella vectensis]
          Length = 102

 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
            P V S+V+   P   P P   +    + + AF ++ KTL           +L +
Sbjct: 1   PPNVESSVVRIEPKNPPPPVNFKEWDGLVRIAFVRKNKTLSACFNSRPVLEMLEK 55


>gi|18542232|gb|AAL75489.1| ErmC [Staphylococcus aureus RN4220]
          Length = 127

 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +   + EIG+G G+ T  L+      V  IE D +     ++    H N  +++  D L+
Sbjct: 1   EHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQ 58

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
             F K    +   +I  N+PYNI T ++   +        +  +   F K +   
Sbjct: 59  FKFPK----NQSYKIYGNIPYNISTDIIRKIVFDSIANEIYLIVEYGFAKRLLNT 109


>gi|18542240|gb|AAL75493.1| ErmC [Staphylococcus aureus]
 gi|18542242|gb|AAL75494.1| ErmC [Staphylococcus aureus]
 gi|18542244|gb|AAL75495.1| ErmC [Staphylococcus aureus]
 gi|18542246|gb|AAL75496.1| ErmC [Staphylococcus aureus]
          Length = 127

 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +   + EIG+G G+ T  L+      V  IE D +     ++    H N  +++  D L+
Sbjct: 1   EHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQ 58

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F K    +   +I  N+PYNI T ++   +    +    + + L+ +    +R+   K
Sbjct: 59  FKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDSIADEIYLIVEYGFAKRLLNTK 110

Query: 167 NS 168
            S
Sbjct: 111 RS 112


>gi|18542234|gb|AAL75490.1| ErmC [Staphylococcus aureus]
 gi|18542236|gb|AAL75491.1| ErmC [Staphylococcus aureus]
 gi|18542238|gb|AAL75492.1| ErmC [Staphylococcus aureus]
          Length = 127

 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +   + EIG+G G+ T  L+      V  IE D +     ++    H N  +++  D L+
Sbjct: 1   EHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQ 58

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
             F K    +   +I  N+PYNI T ++   +    +    + + L+ +    +R+   K
Sbjct: 59  FKFPK----NQSYKIFGNIPYNISTDIIRKIV----FDSIADEIYLIVEYGFAKRLLNTK 110

Query: 167 NS 168
            S
Sbjct: 111 RS 112


>gi|312794464|ref|YP_004027387.1| methyltransferase type 11 [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181604|gb|ADQ41774.1| Methyltransferase type 11 [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 199

 Score = 63.7 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFP 84
           Q+   D   LKKI + +   +G TV+++G G G L   LL     + K++ ++  ++   
Sbjct: 19  QH---DPQKLKKIIDLTDIKEGDTVLDVGCGTGVLEGYLLKKVGKSGKIVAVDISEKMIE 75

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNI 115
             K       N +  +  DAL +DFE++F++
Sbjct: 76  KAKQKFKDASN-ITFLCADALCLDFEEYFDV 105


>gi|6683461|dbj|BAA89222.1| adenine methylase [Streptococcus pneumoniae]
          Length = 131

 Score = 63.7 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 19/150 (12%)

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            +I  D L+      F      +I+ N+PY++ T+++   +        +  +   F K 
Sbjct: 1   TLIHQDILQFQ----FPNKQRYKIVGNIPYHLRTQIIKKVVFESRASDIYLIVEEGFYKR 56

Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPC 217
             +          +  L +L   +     +  +    F P PKV S +I    H   +P 
Sbjct: 57  TLDI---------HRTLGLLLQTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPD 107

Query: 218 CLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
               L       F    K + +  ++L  +
Sbjct: 108 KYWKL----YTYFV--SKWVNREYRQLFTK 131


>gi|307568926|emb|CBX23404.1| ErmF protein [Bacteroides fragilis]
          Length = 68

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
          P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  LL + A  V+ IE D 
Sbjct: 7  PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKI-ANNVVAIENDT 65

Query: 81 QFF 83
             
Sbjct: 66 ALV 68


>gi|194742245|ref|XP_001953616.1| GF17852 [Drosophila ananassae]
 gi|190626653|gb|EDV42177.1| GF17852 [Drosophila ananassae]
          Length = 454

 Score = 63.3 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 82/247 (33%), Gaps = 49/247 (19%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            TV+E+  G G+ T+ LL      R++I++E    F P L+++ S +P R+++ Q D + 
Sbjct: 71  DTVMELNPGTGHFTRHLLDRETQFRRIILLESMDHFMPRLQELHSLYPERVKVRQGDFVN 130

Query: 107 VDF-------------EKFFNISSPIRIIANLP---------YNIGTRLLFNWISADTWP 144
           +                   N         ++          Y+    L+ + I   +  
Sbjct: 131 LWKLVYMDKMDGGSRVMDLLNDVPRKAFNDDVNMLVFGAVGSYHFYKHLINSLIFQTSLY 190

Query: 145 PFWES---LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS--- 198
                   L +     +    T +     Y   S+L     +   +  +    F P    
Sbjct: 191 NLGRCEMILAMPPPIYIHLTCTNEIGYLIYRSTSILFQILFEHQFIAKVPREDFLPMQSN 250

Query: 199 ---------PKVTST------VIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQ 239
                     KV S       ++ F P  N      P  L +L    ++ F  RR  +  
Sbjct: 251 YTLTKGSKLGKVRSINPEYLYLVKFTPRRNLHELVQPQDLPALWFFIKQNFVSRRNRIIP 310

Query: 240 SLKRLGG 246
           +L++   
Sbjct: 311 NLEKWVP 317


>gi|307091932|gb|ADN28301.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 107

 Score = 63.3 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 13/109 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            + ++ +   S DG  ++EIGAG G LT  L +LG R+++  + D +    L+       
Sbjct: 5   TIDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAADIDGRHVDRLRRRLPS-- 60

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             + + + DAL++             ++ N+P++I   +L   ++   W
Sbjct: 61  --VVVRRADALQIR-------PDRPVVVGNIPFHITAPILRRLLATGEW 100


>gi|294918056|ref|XP_002778474.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239886888|gb|EER10269.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 100

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           G + L + +I+ +I  ++      TV+E+G G GN++  L  L A +V+ +E ++     
Sbjct: 6   GGHLLQNEDIITRILLAARIRPSDTVLEMGPGTGNMSVKLSEL-ANRVVAMEVNEGLAKE 64

Query: 86  LKDISS-QHPNRLEIIQDDALKVDFEKF 112
           ++  +  +  + +E++  D  ++   +F
Sbjct: 65  VERRAEMKGASNMEVVTGDFKRLALPRF 92


>gi|312878182|ref|ZP_07738111.1| Methyltransferase type 11 [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795046|gb|EFR11446.1| Methyltransferase type 11 [Caldicellulosiruptor lactoaceticus 6A]
          Length = 199

 Score = 62.9 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFP 84
           Q+   D   LKKI + +   +G TV+++G G G L   LL     + K++ ++  ++   
Sbjct: 19  QH---DPQKLKKIIDMTDIKEGDTVLDVGCGTGVLEGYLLKKVGKSGKIVAVDISEKMIE 75

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNI 115
             K       N +  +  DAL +DFE++F++
Sbjct: 76  KAKQKFKDASN-ITFLCADALCLDFEEYFDV 105


>gi|307091928|gb|ADN28299.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 107

 Score = 62.5 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 13/109 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
              ++ +   S DG  ++EIGAG G LT  L +LG R+++ ++ D +    L+       
Sbjct: 5   TTDRMVDLVRSTDG-PILEIGAGDGALTLGLSSLG-RELLAVDIDGRHVDRLRRRLPS-- 60

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             + + + DAL++             ++ N+P++I T  L   ++   W
Sbjct: 61  --VVVRRADALQIRL-------DRPVVVGNIPFHITTPTLRRLLATGEW 100


>gi|167523120|ref|XP_001745897.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775698|gb|EDQ89321.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1879

 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 28/196 (14%)

Query: 29   FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-------VIEKDQQ 81
            F++D  +   IA      +G  V E  AG G LTQ  L  GA  V         +  D  
Sbjct: 1592 FVMDPRLADLIAAHCDV-EGRHVYEQAAGAGLLTQAFLQHGAAFVTGCNSSSSRLNIDPD 1650

Query: 82   FFPILKDISSQH-----------------PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
             F  L +   +H                 P  ++  +D+ L    +             N
Sbjct: 1651 CFERLTNAFPKHLSVINAHLSVLGYHQTTPEAVKEHEDNVLAARQKDLPRTLFLFLPTHN 1710

Query: 125  LPYNIGTRLLFNWISADTWPPFWESL--TLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
                I T +L+  ++ D+   + +S     L  ++  + + A      + R++ LT    
Sbjct: 1711 GLGYI-TNVLYQLVAFDSPFSYRQSCKFYCLLNRKWAQTLVADPGQSRFTRITALTKTLC 1769

Query: 183  KATMMFDISPHVFFPS 198
                +      +F P 
Sbjct: 1770 DVHELRVFPRQLFSPP 1785


>gi|229822130|ref|YP_002883656.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
 gi|229568043|gb|ACQ81894.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
          Length = 266

 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 3/110 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +  ++ E  G   G    EIG GPG  T  LL LGA  ++ +E D +    L++     P
Sbjct: 33  VYDELVERCGLRPGTATFEIGPGPGTATGRLLELGADPLVAVEPDARLATFLRERFPDAP 92

Query: 95  NRLEIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L+++         E   F++         LP       +   +    W
Sbjct: 93  --LDVVAASFEDAPLELGAFDLGVSFTAFHWLPEEAALAEVARLLRPGGW 140


>gi|120403309|ref|YP_953138.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119956127|gb|ABM13132.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1]
          Length = 187

 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V+E+G G G  T +L T  AR +  +E D     +L D  +  P+ ++I+  DA  +
Sbjct: 32  GDDVLEVGPGYGATTDVLCTEVAR-LTAVEIDPDLAAMLIDRFADQPS-VQIVNGDAAAL 89

Query: 108 DFEK 111
           D+  
Sbjct: 90  DYPD 93


>gi|18542261|gb|AAL75504.1| ErmB [Streptococcus pyogenes]
          Length = 130

 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 14/143 (9%)

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L   +++V  IE D   F  L     +   R+ +I  D L+      F      +I+ ++
Sbjct: 2   LAKISKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRYKIVGSI 56

Query: 126 PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
           PY++ T+++   +        +  +   F K   +          +  L +L   +    
Sbjct: 57  PYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI---------HRTLGLLLHTQVSIQ 107

Query: 186 MMFDISPHVFFPSPKVTSTVIHF 208
            +  +    F P PKV S +I  
Sbjct: 108 QLLKLPAECFHPKPKVNSVLIKL 130


>gi|307091900|gb|ADN28285.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  ++  + E     DG  ++E+GAG G LT  L  LG R +  IE D +    L   +
Sbjct: 1   HDRGVIDTVVEIVARTDG-PILEVGAGDGALTLPLQRLG-RPLTAIEVDARRAARLAKRT 58

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           S       ++  D L+    +     +P  I+ NLP+++ T +L   +    W
Sbjct: 59  SAST---RVVDTDYLQYRLPR-----APHVIVGNLPFHLTTAMLRRILHGPAW 103


>gi|307091996|gb|ADN28333.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 108

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D  I+  +  +    D   ++E+GAG G +T  LL  G R V  +E D      L    
Sbjct: 1   VDPRIIAAMVNAL-PSDSAPILELGAGDGAVTWALLQAG-RVVTAVELDAYRVAAL---W 55

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
            +HP R  ++  D L +       + S   +++N+P+ I T+L  + +    W
Sbjct: 56  CRHP-RAIVVAGDMLDI------RLKSNHHVLSNVPFGITTQLPRHLLPQQHW 101


>gi|319411697|emb|CBQ73741.1| conserved hypothetical protein [Sporisorium reilianum]
          Length = 594

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 107/356 (30%), Gaps = 107/356 (30%)

Query: 29  FLLDLNILKKIAESSGSLDGI------TVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQ 81
           F+ + + +K I  + G  D        TVIE   GPG   T++L      KVI +E   +
Sbjct: 216 FVSNRSTIKDIISALGITDPERNGEKVTVIEGYPGPGTFATELLQMEQVEKVIALEDTPR 275

Query: 82  FFPILKDI------------------------------------SSQHPNRLEIIQDDAL 105
           +   L+++                                     +   NR+       +
Sbjct: 276 YVQKLEELQTLLESKQPGQGARLDILESSAYLWDTYNQLVSSGKLAHLNNRVTTSDGQMV 335

Query: 106 KVDFEKFFNIS---------SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                 F             SP+   A LP  +    LF  I        W       Q 
Sbjct: 336 DFTSNSFVPPDHSDASWQKLSPMIFFAQLPNTVYGEQLFAQIITAIASRIWLFRQGRVQL 395

Query: 157 EV------GERITAQKNSP-HYGRLSVLTGWRTKAT---MMFDISPHV--FFPS-----P 199
                    +R  A+       G+L                 +++PH   FFP      P
Sbjct: 396 GFVCGESLAKRCLAEAGDKISRGKLGTTVQCLADVEVHKYAHELAPHTHHFFPPTMSVGP 455

Query: 200 KVTST--------------------VIHFIPHLNPIPCC--LESLKKITQEAFGKRRKTL 237
           +VT +                    ++   P   P+     +E+ + IT+  F  R K +
Sbjct: 456 RVTVSGTSLIPNSNPSTGLTRTGMVMLTVTPKKKPLVKANEIEAFEFITRNLFILRNKPV 515

Query: 238 RQSLKRL--GGENLLH-----QAG-----IETNLRAEN----LSIEDFCRITNILT 277
            ++L  +  GG+N+L      QA      ++  +  E     L+   +  +  +  
Sbjct: 516 GEALTHVAPGGQNVLKMTSPAQADKGLIRVDEVILPEQIVSDLTNVQWACLARMFE 571


>gi|316931685|ref|YP_004106667.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris DX-1]
 gi|315599399|gb|ADU41934.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris DX-1]
          Length = 201

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 13/164 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92
           + + +A          VIE+G G G +T  L+  G   ++++++E D  F  +L++   Q
Sbjct: 44  LARTMARYVDIDSNGPVIELGPGTGAITSALVEHGVDQKRLVLLEFDPGFCALLRERFPQ 103

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
                +++Q DA ++    +  +  P   + +    +   +L             E    
Sbjct: 104 A----KVVQGDAYRLRDSLWDALDVPATAVVSGLPLVTKPMLTRMKLIRDAFNLLEPGAP 159

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
             Q        A                     +  ++ P   +
Sbjct: 160 FVQ---FTYSVAPPIPKSLS----GVATEASERIWMNVPPARVW 196


>gi|307091934|gb|ADN28302.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 10/113 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  ++  + E     DG  ++E+GAG G LT  L  LG R +  IE D +    L   +
Sbjct: 1   HDRGVIDTVVEIVARTDG-PILEVGAGNGALTLPLQRLG-RPLTAIEVDARRAARLAKRT 58

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           S       ++  D L+          +   I+ NLP+++ T +L   +   +W
Sbjct: 59  SAST---RVVDADLLQYRLP-----HTSHVIVGNLPFHLTTAMLRRMLHGPSW 103


>gi|307091978|gb|ADN28324.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 108

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D  I+  +  +    D   ++E+GAG G +T  LL  G R V  +E D      L+   
Sbjct: 1   VDPRIIAAMVNAL-PSDSAPILELGAGDGAVTWALLQAG-RVVTAVELDAYRVAALR--- 55

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
            +HP R  ++  D           + S   +++N+P+ I T LL + +    W
Sbjct: 56  CRHP-RAIVVAGD------MPDIRLKSNHHVLSNVPFGIMTPLLRHLLPQQHW 101


>gi|114452114|gb|ABI75031.1| erythromycin resistance protein [uncultured bacterium]
          Length = 110

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           EIG+G G+ T+ L+ + +R V  IE D+    + + +     N +++I  D LK +F K 
Sbjct: 1   EIGSGKGHFTKELVKM-SRWVDSIEIDEDLCQVTQKVVKPFQN-IKVIHTDILKFNFPK- 57

Query: 113 FNISSPIRIIANLPYNIGTRLLFNW 137
              +   +I  N+P+NI T ++   
Sbjct: 58  ---NKDYKIFGNIPFNISTDIVKKI 79


>gi|255020712|ref|ZP_05292772.1| Methyltransferase type 12 [Acidithiobacillus caldus ATCC 51756]
 gi|254969828|gb|EET27330.1| Methyltransferase type 12 [Acidithiobacillus caldus ATCC 51756]
          Length = 193

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 20/140 (14%)

Query: 29  FLLDLNIL-----------KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIV 75
           FL D   +           +K+A      +G  V+E+G G G +T+ LL  G     +++
Sbjct: 17  FLRDPRAIGAVFPSSPYLARKMAALVPEGEG-LVLELGPGLGPVTRALLERGIAPADLVL 75

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E+  +    L+         +E+I+ DA ++         +   + +    ++ + L+ 
Sbjct: 76  VERSPRMVAHLRQRFPG----VEVIEGDAARLGDYLHQRGPARAIVSSLPLRSMPSSLVQ 131

Query: 136 NWISADTWPPFWESLTLLFQ 155
             +  D +P    + T+  Q
Sbjct: 132 QIL--DQFPAIGRAGTVFIQ 149


>gi|148560713|ref|YP_001259926.1| phospholipid N-methyltransferase [Brucella ovis ATCC 25840]
 gi|294851353|ref|ZP_06792026.1| pmtA [Brucella sp. NVSL 07-0026]
 gi|148371970|gb|ABQ61949.1| phospholipid N-methyltransferase [Brucella ovis ATCC 25840]
 gi|294819942|gb|EFG36941.1| pmtA [Brucella sp. NVSL 07-0026]
          Length = 199

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E+G G G +T+ +L  G +   +  IE    F   L +    
Sbjct: 40  TARRMASVIDVNSGLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNETFPD 99

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + II+ D   +D             I       N P +    L+ + ++       
Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T      V           +Y     +         + ++ P   +
Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192


>gi|90421855|ref|YP_530225.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris BisB18]
 gi|90103869|gb|ABD85906.1| Ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris BisB18]
          Length = 200

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92
           + + +A          VIE+G G G +T  L+  G   ++++++E +  F  +L++   Q
Sbjct: 43  LARTMANYVEIDSDDPVIELGPGTGAITHALIEHGVDQKRLVLVEYNPSFCALLRERYPQ 102

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                 ++Q DA ++    +  + +P   + +    +   +L   
Sbjct: 103 A----TVVQGDAYRLRDSLWKILKAPAAAVVSGLPLVTKPMLTRL 143


>gi|217979083|ref|YP_002363230.1| Methyltransferase type 12 [Methylocella silvestris BL2]
 gi|217504459|gb|ACK51868.1| Methyltransferase type 12 [Methylocella silvestris BL2]
          Length = 284

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A          VIE+G G G +T+ LL  G    ++ +IE D  F   L+     
Sbjct: 51  LARMMARYVDPHQTGPVIELGPGTGAITEALLARGVAPDRLYLIEFDPNFCRHLRRRFPG 110

Query: 93  HPNRLEIIQDDALKV 107
               + +I+ DA + 
Sbjct: 111 ----VHVIEGDAYRF 121


>gi|307091960|gb|ADN28315.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 108

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D  I+  +  +    D   ++E+GAG   +T  LL  G R V  +E D      L+   
Sbjct: 1   VDPRIIVAMVNAL-PSDSAPILELGAGDAAVTWALLQAG-RVVTAVELDAYRVAALR--- 55

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
            +HP R  ++  D L +       + S   +++N+P+ I T LL + +    W
Sbjct: 56  CRHP-RAIVVAGDMLDI------RLKSNHHVLSNVPFGITTPLLRHLLPQQHW 101


>gi|116563468|gb|ABJ99756.1| ErmC [Staphylococcus epidermidis]
          Length = 95

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           EIG+G G+ T  L+      V  IE D +     ++    H N  +++  D L+  F K 
Sbjct: 1   EIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDN-FQVLNKDILQFKFPK- 57

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWI 138
              +   +I  N+PYNI T ++   +
Sbjct: 58  ---NQSYKIFGNIPYNISTDIIRKIV 80


>gi|225626499|ref|ZP_03784538.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella ceti str. Cudo]
 gi|225618156|gb|EEH15199.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella ceti str. Cudo]
          Length = 204

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A        + V+E+G G G +T+ +L  G +   +  IE    F   L      
Sbjct: 45  TARRMASVIDVNSDLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 104

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + II+ D   +D             I       N P +    L+ + ++       
Sbjct: 105 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 160

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T      V           +Y     +         + ++ P   +
Sbjct: 161 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 197


>gi|161620039|ref|YP_001593926.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella canis ATCC 23365]
 gi|163844143|ref|YP_001628548.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella suis ATCC 23445]
 gi|254700760|ref|ZP_05162588.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella suis bv. 5 str. 513]
 gi|254705132|ref|ZP_05166960.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella suis bv. 3 str. 686]
 gi|256060092|ref|ZP_05450274.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella neotomae 5K33]
 gi|256370525|ref|YP_003108036.1| phospholipid N-methyltransferase [Brucella microti CCM 4915]
 gi|260567401|ref|ZP_05837871.1| SAM binding domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261324067|ref|ZP_05963264.1| phospholipid N-methyltransferase [Brucella neotomae 5K33]
 gi|261751268|ref|ZP_05994977.1| phospholipid N-methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755833|ref|ZP_05999542.1| phospholipid N-methyltransferase [Brucella suis bv. 3 str. 686]
 gi|306842760|ref|ZP_07475402.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella sp. BO2]
 gi|306843547|ref|ZP_07476148.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella sp. BO1]
 gi|161336850|gb|ABX63155.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella canis ATCC 23365]
 gi|163674866|gb|ABY38977.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella suis ATCC 23445]
 gi|256000688|gb|ACU49087.1| phospholipid N-methyltransferase [Brucella microti CCM 4915]
 gi|260156919|gb|EEW91999.1| SAM binding domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261300047|gb|EEY03544.1| phospholipid N-methyltransferase [Brucella neotomae 5K33]
 gi|261741021|gb|EEY28947.1| phospholipid N-methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261745586|gb|EEY33512.1| phospholipid N-methyltransferase [Brucella suis bv. 3 str. 686]
 gi|306276238|gb|EFM57938.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella sp. BO1]
 gi|306287104|gb|EFM58609.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella sp. BO2]
          Length = 199

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E+G G G +T+ +L  G +   +  IE    F   L      
Sbjct: 40  TARRMASVIDVNSGLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 99

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + II+ D   +D             I       N P +    L+ + ++       
Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T      V           +Y     +         + ++ P   +
Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192


>gi|254709105|ref|ZP_05170916.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella pinnipedialis B2/94]
 gi|256030631|ref|ZP_05444245.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella pinnipedialis M292/94/1]
 gi|256158628|ref|ZP_05456515.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella ceti M490/95/1]
 gi|256254037|ref|ZP_05459573.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella ceti B1/94]
 gi|260169535|ref|ZP_05756346.1| phospholipid N-methyltransferase [Brucella sp. F5/99]
 gi|261221176|ref|ZP_05935457.1| phospholipid N-methyltransferase [Brucella ceti B1/94]
 gi|261316604|ref|ZP_05955801.1| phospholipid N-methyltransferase [Brucella pinnipedialis B2/94]
 gi|261759061|ref|ZP_06002770.1| SAM binding domain-containing protein [Brucella sp. F5/99]
 gi|265987676|ref|ZP_06100233.1| phospholipid N-methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265997136|ref|ZP_06109693.1| phospholipid N-methyltransferase [Brucella ceti M490/95/1]
 gi|260919760|gb|EEX86413.1| phospholipid N-methyltransferase [Brucella ceti B1/94]
 gi|261295827|gb|EEX99323.1| phospholipid N-methyltransferase [Brucella pinnipedialis B2/94]
 gi|261739045|gb|EEY27041.1| SAM binding domain-containing protein [Brucella sp. F5/99]
 gi|262551604|gb|EEZ07594.1| phospholipid N-methyltransferase [Brucella ceti M490/95/1]
 gi|264659873|gb|EEZ30134.1| phospholipid N-methyltransferase [Brucella pinnipedialis M292/94/1]
          Length = 199

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A        + V+E+G G G +T+ +L  G +   +  IE    F   L      
Sbjct: 40  TARRMASVIDVNSDLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 99

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + II+ D   +D             I       N P +    L+ + ++       
Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T      V           +Y     +         + ++ P   +
Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192


>gi|145595515|ref|YP_001159812.1| methyltransferase type 11 [Salinispora tropica CNB-440]
 gi|145304852|gb|ABP55434.1| Methyltransferase type 11 [Salinispora tropica CNB-440]
          Length = 273

 Score = 59.4 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 39/182 (21%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G   G  V+EIG G G  T+ L+  GA  V+ +E        L+   + H   + +I+ D
Sbjct: 33  GLGPGARVLEIGPGTGQATRPLVAAGA-SVLAVELGGHLAARLRTDLAGHD--VTVIEGD 89

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
            + V      +    + + A           F+W+  D        L             
Sbjct: 90  FVTV---PLPDGDVDLAVCAT---------TFHWLDPDAAVRRLARLV------------ 125

Query: 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLK 223
            +      G L+V             I P       +V      ++P     P  L ++ 
Sbjct: 126 -RPG----GGLAVWWTVFGDPDR---IPPW----RAEVDRLYRRWLPGEKVRPGDLPAVM 173

Query: 224 KI 225
           ++
Sbjct: 174 RV 175


>gi|10439137|dbj|BAB15441.1| unnamed protein product [Homo sapiens]
          Length = 230

 Score = 59.1 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 31/197 (15%)

Query: 118 PIRIIANLPYNIGTRLLFNW------ISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           P++++   P   G R L+         ++       E    + +KE  + +    N   Y
Sbjct: 22  PLKVVGMFPSRGGRRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLY 81

Query: 172 GRLSVLTGWRTKATMM-------FDI-----SPHVFFPSPKVTS-----TVIHFIPHLNP 214
             LSV+     +  ++       FDI               +        +I  IP  N 
Sbjct: 82  HVLSVIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNL 141

Query: 215 I-----PCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSI 266
                 P        + +  FG+R  T+    +SL  L   ++L Q G + + +  N+  
Sbjct: 142 FTKNLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHP 201

Query: 267 EDFCRITNILTDNQDIA 283
           +DF  +   +  ++D A
Sbjct: 202 QDFKTLFETIERSKDCA 218


>gi|17988283|ref|NP_540917.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella melitensis bv. 1 str. 16M]
 gi|225853555|ref|YP_002733788.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella melitensis ATCC 23457]
 gi|256045734|ref|ZP_05448612.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112454|ref|ZP_05453375.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella melitensis bv. 3 str. Ether]
 gi|256262960|ref|ZP_05465492.1| SAM binding domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|260563031|ref|ZP_05833517.1| SAM binding domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|265992150|ref|ZP_06104707.1| phospholipid N-methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993888|ref|ZP_06106445.1| phospholipid N-methyltransferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|17984053|gb|AAL53181.1| phosphatidylethanolamine n-methyltransferase /
           phosphatidyl-n-methylethanolamine n-methyltransferase
           [Brucella melitensis bv. 1 str. 16M]
 gi|225641920|gb|ACO01834.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella melitensis ATCC 23457]
 gi|260153047|gb|EEW88139.1| SAM binding domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|262764869|gb|EEZ10790.1| phospholipid N-methyltransferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|263003216|gb|EEZ15509.1| phospholipid N-methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092835|gb|EEZ17010.1| SAM binding domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|326410127|gb|ADZ67192.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella melitensis M28]
 gi|326539846|gb|ADZ88061.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella melitensis M5-90]
          Length = 199

 Score = 59.1 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E G G G +T+ +L  G +   +  IE    F   L      
Sbjct: 40  TARRMASVIDVNSGLPVLEFGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 99

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + II+ D   +D             I       N P +    L+ + ++       
Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T      V           +Y     +         + ++ P   +
Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192


>gi|254713469|ref|ZP_05175280.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella ceti M644/93/1]
 gi|254716175|ref|ZP_05177986.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella ceti M13/05/1]
 gi|261217947|ref|ZP_05932228.1| phospholipid N-methyltransferase [Brucella ceti M13/05/1]
 gi|261321203|ref|ZP_05960400.1| phospholipid N-methyltransferase [Brucella ceti M644/93/1]
 gi|260923036|gb|EEX89604.1| phospholipid N-methyltransferase [Brucella ceti M13/05/1]
 gi|261293893|gb|EEX97389.1| phospholipid N-methyltransferase [Brucella ceti M644/93/1]
          Length = 199

 Score = 59.1 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E+G G G +T+ +L  G +   +  IE    F   L      
Sbjct: 40  TARRMASVIDVNSGLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEQLNKTFPD 99

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + II+ D   +D             I       N P +    L+ + ++       
Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T      V           +Y     +         + ++ P   +
Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192


>gi|254718170|ref|ZP_05179981.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella sp. 83/13]
 gi|265983125|ref|ZP_06095860.1| phospholipid N-methyltransferase [Brucella sp. 83/13]
 gi|306837685|ref|ZP_07470554.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella sp. NF 2653]
 gi|264661717|gb|EEZ31978.1| phospholipid N-methyltransferase [Brucella sp. 83/13]
 gi|306407243|gb|EFM63453.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Brucella sp. NF 2653]
          Length = 199

 Score = 59.1 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A    +  G+ V+E+G G G +T+ +L  G +   +  IE    F   L      
Sbjct: 40  TARRMASVIDANSGLPVLELGPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 99

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + II+ D   +D             I       N P +    L+ + ++       
Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T      V           +Y     +         + ++ P   +
Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192


>gi|307091858|gb|ADN28264.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 110

 Score = 58.7 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 10/113 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  ++  + E     DG  ++EIGAG G LT  L  LG R +  IE D +       ++
Sbjct: 1   HDRGVIGTVVEIVARTDG-PILEIGAGDGALTLPLQRLG-RPLTAIEVDARRAAR---LA 55

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
            +      ++  D L+    +     +P  I+ NL +++ T +L   +    W
Sbjct: 56  RRTSAATHVVDADFLQYRLPR-----APHVIVGNLLFHLTTAMLRRLLHGPGW 103


>gi|39933412|ref|NP_945688.1| putative phospholipid N-methyltransferase [Rhodopseudomonas
           palustris CGA009]
 gi|192288769|ref|YP_001989374.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris TIE-1]
 gi|39647258|emb|CAE25779.1| putative phospholipid N-methyltransferase [Rhodopseudomonas
           palustris CGA009]
 gi|192282518|gb|ACE98898.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris TIE-1]
          Length = 201

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92
           + + +A          VIE+G G G +T  L+  G   ++++++E D  F  +L++    
Sbjct: 44  LARTMARYVDIQSDGPVIELGPGTGAITNALVEHGVDQKRLVLLEFDPGFCALLRERFPL 103

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                +++Q DA ++    +  +  P   + +    +   +L   
Sbjct: 104 A----KVVQGDAYRLRDSLWDALEIPATAVVSGLPLVTKPMLTRM 144


>gi|153008124|ref|YP_001369339.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560012|gb|ABS13510.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 199

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A    +  G+ V+E+G G G +T+ +L  G +   +  IE  Q F   L  I  +
Sbjct: 40  TARRMASVIDTGSGLPVLELGPGTGVITKAILKQGVKPADLYSIEYSQDFVDHLNTIFPE 99

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + IIQ DA  +D             I       N P +   +L+ + +S       
Sbjct: 100 ----VNIIQGDAFDLDSALGEKKDQKFDCIISAVPMLNFPMDKRIQLVESLLSRIPHGRP 155

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T                    G  +V          + ++ P   +
Sbjct: 156 LMQITYGPL---------PPVPAGRGNYTV--QHYDFV--VRNVPPAQLW 192


>gi|222618431|gb|EEE54563.1| hypothetical protein OsJ_01755 [Oryza sativa Japonica Group]
          Length = 321

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 56/215 (26%), Gaps = 59/215 (27%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ+ L +  +L  I   +                          AR        Q  
Sbjct: 45  KARGQHLLTNPRVLDAIVAHAALRS----------------------ARSTPS----QPL 78

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              L        ++L +   D++ ++  KF         +A++PY I + L    +    
Sbjct: 79  AAGL-----GLGHKLTVTTGDSMAIELPKF------DICVASIPYGISSPLTAKLLIGSH 127

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                 +           R+           L+          ++ D+S   F       
Sbjct: 128 RFRARFA----------RRLMGTPGHGERNLLATNARLVADVRLLMDVSRPEF------- 170

Query: 203 STVIHFIPHLNPIP-----CCLESLKKITQEAFGK 232
           S+++   P             L      T+   G+
Sbjct: 171 SSLVEIRPKQTRPKEFAAGVELHEWLAFTRACTGQ 205


>gi|158346654|gb|ABW36939.1| rRNA methylase [Neisseria gonorrhoeae]
          Length = 55

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             QNFL    +L +I +     +  TV EIG G G+LT  L  
Sbjct: 6  KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAK 49


>gi|158346651|gb|ABW36937.1| rRNA methylase [Neisseria gonorrhoeae]
          Length = 50

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             QNFL    +L +I +     +  TV EIG G G+LT  L  
Sbjct: 6  KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAK 49


>gi|168698912|ref|ZP_02731189.1| hypothetical protein GobsU_05296 [Gemmata obscuriglobus UQM 2246]
          Length = 286

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 4/138 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--IS 90
            +I+ ++ +         V E G G G +    +  GA+K + IE D +     ++    
Sbjct: 137 DDIVDEMMKLGKIGKDDVVYEPGPGDGRMLIAAVKKGAKKGVGIELDPKKAEEARENIKK 196

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +    ++ II+ DALK     +   +  +  + N   ++   +L   + A +       +
Sbjct: 197 AGLEKQITIIEGDALK--DRDYSEATVVLLYMGNEFNDLLRPILDKQLKAGSRIVSHRFV 254

Query: 151 TLLFQKEVGERITAQKNS 168
              ++ +  + IT     
Sbjct: 255 IGDWKPDTTKTITGADGD 272


>gi|307091862|gb|ADN28266.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 108

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  ++    E      G  ++E+GAG G LT  L  LG R +  IE D++    L   SS
Sbjct: 2   DRRVVADTIEIVSRTTG-PIVEVGAGNGALTLPLQRLG-RSLTAIEIDRRRARRLARHSS 59

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
                 ++I  D L    ++     +P  ++ NLP+++   ++   +    W
Sbjct: 60  A-----DVIAADFLHYRLQR-----TPHVVVGNLPFHLTAAMMRRLLHGPGW 101


>gi|5327231|emb|CAB46340.1| adenine methaylase [Staphylococcus aureus]
          Length = 73

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +  
Sbjct: 9  SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLC 65


>gi|149482602|ref|XP_001517047.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 465

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 37/194 (19%)

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
             +L+++  D LK +   F         +ANLP+ I +  +F  +    +          
Sbjct: 149 AGKLQVLVGDVLKTELPFF------DACVANLPFQISSPFVFKLLLHRPF---------- 192

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK-VTSTVIHFIPHL 212
                   +TA   S + G    LT  +        I        P    +         
Sbjct: 193 ------FSLTALSKSDNRGTREALTMCQAPYERPGSIGRSAASLRPSSGNAGRTRLDKRS 246

Query: 213 NPIPCCL-----ESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE----N 263
                       +    + +  F ++ KTL  + K    + LL +     N R      +
Sbjct: 247 RKRSAERVLQPAQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEK-----NYRVHCSVND 301

Query: 264 LSIEDFCRITNILT 277
           ++I D  RI   + 
Sbjct: 302 IAIPDDFRIAEKIQ 315


>gi|92115789|ref|YP_575518.1| ribosomal RNA adenine methylase transferase [Nitrobacter
           hamburgensis X14]
 gi|91798683|gb|ABE61058.1| Ribosomal RNA adenine methylase transferase [Nitrobacter
           hamburgensis X14]
          Length = 200

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 34  NILKK-IAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDIS 90
            IL + +A+         V+E+G G G +T  L+  G   +++++IE D  F  +L+D  
Sbjct: 41  RILARTMAQYVDVGSTDPVVELGPGTGAITNALIEHGVDQKRLVLIEYDPGFCALLRDRY 100

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            Q      ++Q DA  +    +  +S+    I +    +   +L   
Sbjct: 101 PQA----TVVQGDAYTLRDSLWNVLSARASAIVSGLPLVTKPMLTRL 143


>gi|119597555|gb|EAW77149.1| transcription factor B2, mitochondrial, isoform CRA_a [Homo
           sapiens]
 gi|119597559|gb|EAW77153.1| transcription factor B2, mitochondrial, isoform CRA_a [Homo
           sapiens]
          Length = 230

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 31/197 (15%)

Query: 118 PIRIIANLPYNIGTRLLFNW------ISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
           P++++   P     R L+         ++       E    + +KE  + +    N   Y
Sbjct: 22  PLKVVGMFPSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLY 81

Query: 172 GRLSVLTGWRTKATMM-------FDI-----SPHVFFPSPKVTS-----TVIHFIPHLNP 214
             LSV+     +  ++       FDI               +        +I  IP  N 
Sbjct: 82  HVLSVIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNL 141

Query: 215 I-----PCCLESLKKITQEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSI 266
                 P        + +  FG+R  T+    +SL  L   ++L Q G + + +  N+  
Sbjct: 142 FTKNLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHP 201

Query: 267 EDFCRITNILTDNQDIA 283
           +DF  +   +  ++D A
Sbjct: 202 QDFKTLFETIERSKDCA 218


>gi|239833174|ref|ZP_04681503.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Ochrobactrum intermedium LMG 3301]
 gi|239825441|gb|EEQ97009.1| phosphatidylethanolamine N-methyltransferase /
           phosphatidyl-N-methylethanolamine N-methyltransferase
           [Ochrobactrum intermedium LMG 3301]
          Length = 204

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A    +  G+ V+E+G G G +T+ +L  G +   +  IE  Q F   L  I  +
Sbjct: 45  TARRMASVIDTGSGLPVLELGPGTGVITKAILKQGVKPADLYSIEYSQDFVDHLNTIFPE 104

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + IIQ DA  +D             I       N P +   +L+ + +S       
Sbjct: 105 ----VNIIQGDAFDLDSALGEKKDQKFDCIISAVPMLNFPMDRRIQLVESLLSRIPRGRP 160

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T                    G  +V          + ++ P   +
Sbjct: 161 LMQITYGPL---------PPVPAGRGNYTV--QHYDFV--VRNVPPAQLW 197


>gi|85714055|ref|ZP_01045044.1| ribosomal RNA adenine methylase transferase [Nitrobacter sp.
           Nb-311A]
 gi|85699181|gb|EAQ37049.1| ribosomal RNA adenine methylase transferase [Nitrobacter sp.
           Nb-311A]
          Length = 154

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNR 96
           +A+         VIE+G G G +T  L+  G   ++++++E D  F  +L+D   Q    
Sbjct: 1   MAQYVDVGSTDPVIELGPGTGAITNALIEHGVDQKRLVLVEYDPGFCALLRDRYPQA--- 57

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
             ++Q DA  +    +  +S+    I +    +   +L   
Sbjct: 58  -TVVQGDAYTLRDSLWNVLSARASAIVSGLPLVTKPMLTRL 97


>gi|299133267|ref|ZP_07026462.1| ribosomal RNA adenine methylase transferase [Afipia sp. 1NLS2]
 gi|298593404|gb|EFI53604.1| ribosomal RNA adenine methylase transferase [Afipia sp. 1NLS2]
          Length = 198

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 16/165 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92
           + + +A          VIE+G G G +T  L+  G   ++++++E +  F  +L++   Q
Sbjct: 42  LARTMASYVDKHSEAPVIELGPGTGAITDALVAHGVEQKRLVLVEFNPGFCALLRERYPQ 101

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT 151
                 ++Q DA ++D            +++ LP  +   +L    +  + +        
Sbjct: 102 A----TVVQGDAYQLDKTLAAIAQPASAVVSGLPL-VTKPMLTRLRLMREAFMKLIPGAP 156

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
            +          A           VLT       +  ++ P   +
Sbjct: 157 FV----QFTYSVAPPIPK--SLPGVLTQ--ASERIWMNVPPARVW 193


>gi|195330205|ref|XP_002031795.1| GM23852 [Drosophila sechellia]
 gi|194120738|gb|EDW42781.1| GM23852 [Drosophila sechellia]
          Length = 454

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 49/247 (19%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            TV+E+ +G G  T+ LL   +  R++I++E    F P ++++ + +P R+++ Q D + 
Sbjct: 71  DTVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGDFVN 130

Query: 107 VD----FEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT--LLFQKEVG 159
           +      +K    S    +++++P    T  +      A    PF++ L   L+FQ  + 
Sbjct: 131 LWKLVYMDKIDGGSRVADLLSDVPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLF 190

Query: 160 -----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFPS--- 198
                E I A                   Y   SVL     +   +  +    F P    
Sbjct: 191 NLGRCEMILAMPPPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQTA 250

Query: 199 ---------PKVTST------VIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQ 239
                     KV S       ++ F P  N      P  L +L    ++ +  RR  +  
Sbjct: 251 YSPTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQPQDLPALWFFIKQNYVSRRNRIIP 310

Query: 240 SLKRLGG 246
           +L++   
Sbjct: 311 NLEKWVP 317


>gi|1107874|emb|CAA57980.1| rRNA methylase [Staphylococcus haemolyticus]
          Length = 74

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +  
Sbjct: 9  SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVKRC-NFVTAIEIDHKLC 65


>gi|198450471|ref|XP_001357992.2| GA17767 [Drosophila pseudoobscura pseudoobscura]
 gi|198131051|gb|EAL27128.2| GA17767 [Drosophila pseudoobscura pseudoobscura]
          Length = 452

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 105/302 (34%), Gaps = 61/302 (20%)

Query: 6   KSHSLKTILSHY-KIIPKKYMG--Q----N-FLLDLNILKKIAESSGS----LDGITVIE 53
            S + + +++ Y    P+K +   Q    + ++ +    ++I +            TV+E
Sbjct: 18  SSKAKRELVARYSGEYPEKLLSKKQKTPTHMYVANAKTAQRIGQYLEPHLQQTSCDTVLE 77

Query: 54  IGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           +  G G+ T+ LL      RK+I++E  + F P L ++ + +P R+++   D + +    
Sbjct: 78  LNPGAGHFTRHLLDRETQFRKIILLESMEYFMPRLHELHTLYPERVKVRHGDLVNLWKLV 137

Query: 112 FFNISSPIRII----ANLPYNIGTRLLFNWI-----SADTWPPFWESLTL---LFQKEVG 159
           F +       +     ++P    T  +   +     S   +     SL     L+     
Sbjct: 138 FMDKMDNGVRVAELLHDVPQRPFTDDINMLVFGAVGSYAFFKHLINSLVFQTSLYNLGRC 197

Query: 160 ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFP--------- 197
           E I A                   Y   +VL     +   +  +    F P         
Sbjct: 198 EMILAMPPPIYIHLTCDNEVGYLIYRSTTVLFQILFEHRFIAKVPREDFLPLQADYKLTK 257

Query: 198 ---SPKVTST------VIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
                KV S       ++ F+P  N      P  L +L    ++ +  RR  +  +L++ 
Sbjct: 258 SSKLGKVRSVNPEYLYLVKFVPRRNLHELCSPQDLIALWFFIKQNYVSRRNRIIPNLEKW 317

Query: 245 GG 246
             
Sbjct: 318 VP 319


>gi|165928517|ref|ZP_02224349.1| dimethyladenosine transferase
          (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
          dimethyltransferase) (16S rRNA dimethylase) (Highlevel
          kasugamycin resistance protein KsgA)
          (Kasugamycindimethyltransferase) [Yersinia pestis
          biovar Orientalis str. F1991016]
 gi|165919445|gb|EDR36801.1| dimethyladenosine transferase
          (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
          dimethyltransferase) (16S rRNA dimethylase) (Highlevel
          kasugamycin resistance protein KsgA)
          (Kasugamycindimethyltransferase) [Yersinia pestis
          biovar Orientalis str. F1991016]
          Length = 66

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 3  MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIE 53
          MNN+ H             +K  GQNFL D  ++  I  +   + G  V E
Sbjct: 1  MNNRVHQ--------GHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVGE 43


>gi|302672062|ref|YP_003832022.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302396535|gb|ADL35440.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 198

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 4/134 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D ++ + I  + G L+G  V++I  G G +    L  GA+KV  ++   Q     +    
Sbjct: 27  DESVTRDIIGNLGQLEGKKVLDIACGTGFMIPYYLEAGAKKVTGVDISAQMLEKARQKFR 86

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
            H   ++ I  DA + +F++ +++     I    P+      L + +S          + 
Sbjct: 87  NHSE-VDFINGDAEQFEFDEKYDVC---VIYNAFPHFPSPETLMHNLSTALVDNGSICIA 142

Query: 152 LLFQKEVGERITAQ 165
               +EV +   A 
Sbjct: 143 HGASREVIDGCHAG 156


>gi|157965686|gb|ABW06859.1| Erm(41) methylase [Mycobacterium abscessus]
          Length = 138

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 22/157 (14%)

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           GAG G LT  L+  GAR V+ +E        L+   ++    + + + D L   + +   
Sbjct: 4   GAGHGALTAHLVAAGAR-VLAVELHPGRARHLRSRFAEED--VRVAEADLLAFRWPR--- 57

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
              P R++A+ PY + + L+ + ++ ++      +  L+ Q+    +   +    H+   
Sbjct: 58  --RPFRVVASPPYQVTSALIRSLLTPES---RLLAADLVLQRGAVHKHAKRAPVRHWT-- 110

Query: 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
                 R   T+        F   P+V S+V+     
Sbjct: 111 -----LRAGITL----PRSAFHHPPQVDSSVLVIRRR 138


>gi|298249778|ref|ZP_06973582.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297547782|gb|EFH81649.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-----KVIVIEKDQQFFPILKDISSQH 93
           I E +G   G+ V+EIG GPG  T +L    A       V  +E   +   +L+    + 
Sbjct: 64  IVERAGVALGMRVLEIGPGPGLFTTVLARRVAAGKSSGSVTCVEVQSKMIELLRQRLERE 123

Query: 94  P-NRLEIIQDDALKVDFEK-FFNISSPIRIIANLPYNIG 130
               +EIIQ D   +   +  F++   + ++  LPY + 
Sbjct: 124 EVGNVEIIQADGCHMPLPEGSFDMIFLVTVVGELPYPVA 162


>gi|4138445|emb|CAA77018.1| adenine methylase [Staphylococcus aureus]
          Length = 74

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           QNF+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +  
Sbjct: 9  SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLC 65


>gi|296333180|ref|ZP_06875633.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305675314|ref|YP_003866986.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296149378|gb|EFG90274.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305413558|gb|ADM38677.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 213

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             I ++  S  G  V+E G G GNLT  LL  G + V  IE       +  D  S    R
Sbjct: 35  DDILDAIVSRSGTHVLEFGPGTGNLTAKLLEAG-KSVFGIEPSPAMRKLASDKLS---GR 90

Query: 97  LEIIQDDALKVDFEKFF 113
            EI+  D L      F 
Sbjct: 91  AEIVDGDFLTFPEPPFH 107


>gi|75674398|ref|YP_316819.1| ribosomal RNA adenine methylase transferase [Nitrobacter
           winogradskyi Nb-255]
 gi|74419268|gb|ABA03467.1| ribosomal RNA adenine methylase transferase [Nitrobacter
           winogradskyi Nb-255]
          Length = 200

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A+         VIE+G G G +T  L+  G   ++++++E D  F  +L+D   Q
Sbjct: 43  LARTMAQYVDVASADPVIELGPGTGAITNALIEHGVDPKRLVLVEYDPGFCALLRDRYPQ 102

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                 ++Q DA  +    +  +S+    I +    +   +L   
Sbjct: 103 A----TVVQGDAYTLRDSLWNVLSARASAIVSGLPLVTKPMLTRL 143


>gi|259120682|gb|ACV91980.1| ErmB [synthetic construct]
 gi|259120685|gb|ACV91982.1| ErmB [synthetic construct]
 gi|259120688|gb|ACV91984.1| ErmB [synthetic construct]
 gi|259120691|gb|ACV91986.1| ErmB [synthetic construct]
 gi|259120694|gb|ACV91988.1| ErmB [synthetic construct]
 gi|259120700|gb|ACV91992.1| ErmB [synthetic construct]
 gi|259120702|gb|ACV91993.1| ErmB [synthetic construct]
          Length = 47

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
             QNFL    +L +I +     +  TV EIG G G+LT  L
Sbjct: 6  KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKL 47


>gi|218659431|ref|ZP_03515361.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase protein
           [Rhizobium etli IE4771]
          Length = 150

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL++ + L K+ + +       V+E+G G G  T  LL++ A  VI +E D+      K+
Sbjct: 65  FLMEASPLAKLLQLAAISKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDEGLAAEAKE 123

Query: 89  ISSQHPNRLEIIQD 102
             + +  ++E++  
Sbjct: 124 KLAGY-GKVEVVTG 136


>gi|260463409|ref|ZP_05811609.1| ribosomal RNA adenine methylase transferase [Mesorhizobium
           opportunistum WSM2075]
 gi|259030734|gb|EEW32010.1| ribosomal RNA adenine methylase transferase [Mesorhizobium
           opportunistum WSM2075]
          Length = 200

 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             +K+A       G+ V+E+G G G +T+ +L  G R   +  +E    F   L+ +   
Sbjct: 42  TARKMASIVNPKSGLPVLEVGPGTGVITRAILAQGVRPENLYAVEYSTDFVRHLRQL--- 98

Query: 93  HPNRLEIIQDDALKVD 108
           +P  + +I+ DA  ++
Sbjct: 99  YPG-VNVIEGDAFNLN 113


>gi|319780467|ref|YP_004139943.1| ribosomal RNA adenine methylase transferase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166355|gb|ADV09893.1| ribosomal RNA adenine methylase transferase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 201

 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             +K+A       G+ V+E+G G G +T+ +L  G R   +  +E    F   L+ +   
Sbjct: 42  TARKMASIVNPKSGLPVLEVGPGTGVITRAILAQGVRPENLYAVEYSTDFVRHLRRLYPG 101

Query: 93  HPNRLEIIQDDALKVD 108
               + +I+ DA  ++
Sbjct: 102 ----VNVIEGDAFNLN 113


>gi|13473984|ref|NP_105552.1| phospholipid N-methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14024735|dbj|BAB51338.1| phospholipid N-methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 201

 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             +K+A       G+ V+E+G G G +T+ +L  G R   +  +E    F   L+ +   
Sbjct: 42  TARKMASIVNPKSGLPVLEVGPGTGVITRAILAQGVRPENLYAVEYSTDFVRHLRQL--- 98

Query: 93  HPNRLEIIQDDALKVD 108
           +P  + +I+ DA  ++
Sbjct: 99  YPG-VNVIEGDAFNLN 113


>gi|218462899|ref|ZP_03502990.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase protein
           [Rhizobium etli Kim 5]
          Length = 221

 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL++ + L K+ + +       V+E+G G G  T  LL++ A  VI +E D+      K+
Sbjct: 66  FLMEASPLAKLLQLAAISKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDEGLAAEAKE 124

Query: 89  ISSQHPNRLEIIQD 102
             + +  ++E++  
Sbjct: 125 KLAGY-GKVEVVTG 137


>gi|195166002|ref|XP_002023824.1| GL27200 [Drosophila persimilis]
 gi|194105984|gb|EDW28027.1| GL27200 [Drosophila persimilis]
          Length = 452

 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 103/302 (34%), Gaps = 61/302 (20%)

Query: 6   KSHSLKTILSHY-KIIPKKYMG--Q----N-FLLDLNILKKIAESSGS----LDGITVIE 53
            S + + +++ Y    P+K +   Q    + ++ +    ++I +            TV+E
Sbjct: 18  SSKAKRELVARYSGEYPEKLLSKKQKTPTHMYVANAKTAQRIGQYLEPHLQQTSCDTVLE 77

Query: 54  IGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           +  G G+ T+ LL      RK+I++E    F P L ++ + +P R+++   D + +    
Sbjct: 78  LNPGAGHFTRHLLDRETQFRKIILLESMDYFMPRLHELHTLYPERVKVRHGDLVNLWKLV 137

Query: 112 FFNISSPIRII----ANLPYNIGTRLLFNWI-----SADTWPPFWESLTL---LFQKEVG 159
           F +       +     ++P    T  +   +     S   +     SL     L+     
Sbjct: 138 FMDKMDNGVRVAELLHDVPQRPFTDDINMLVFGAVGSYAFFKHLINSLVFQTSLYNLGRC 197

Query: 160 ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFP--------- 197
           E I A                   Y   +VL     +   +  +    F P         
Sbjct: 198 EMILAMPPPIYIHLTCDNEVGYLIYRSTTVLFQILFEHRFIAKVPREDFLPLQADYKLTK 257

Query: 198 ---SPKVTST------VIHFIPHLNPI----PCCLESLKKITQEAFGKRRKTLRQSLKRL 244
                KV S       ++ F+P  N      P  L +L    ++    RR  +  +L++ 
Sbjct: 258 SSKLGKVRSVNPEYLYLVKFVPRRNLHELCSPQDLIALWFFIKQNMVSRRNRIIPNLEKW 317

Query: 245 GG 246
             
Sbjct: 318 VP 319


>gi|255527133|ref|ZP_05394020.1| Methyltransferase type 12 [Clostridium carboxidivorans P7]
 gi|296186578|ref|ZP_06854981.1| ribosomal RNA adenine dimethylase family protein [Clostridium
           carboxidivorans P7]
 gi|255509184|gb|EET85537.1| Methyltransferase type 12 [Clostridium carboxidivorans P7]
 gi|296049025|gb|EFG88456.1| ribosomal RNA adenine dimethylase family protein [Clostridium
           carboxidivorans P7]
          Length = 250

 Score = 56.4 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             + E S      TV+EIG G G  T+ +L  G   +  IE  +      K   S + N 
Sbjct: 27  ADVIEYSKLDCSKTVLEIGPGTGQATEPILKTGCSYL-AIELGENLAEYTKKKFSSY-NN 84

Query: 97  LEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
            +I+ DD    DF    F++      I  +P  IG   +++ + ++
Sbjct: 85  FQIVNDDFETYDFGNNQFDLVYSAATIQWIPEKIGFPKVYDMLESN 130


>gi|91974869|ref|YP_567528.1| putative phospholipid N-methyltransferase [Rhodopseudomonas
           palustris BisB5]
 gi|91681325|gb|ABE37627.1| putative phospholipid N-methyltransferase [Rhodopseudomonas
           palustris BisB5]
          Length = 200

 Score = 56.4 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92
           + + +A+         VIE+G G G +T  L+  G   ++++++E +  F  +L++   Q
Sbjct: 43  LARTMAQYVDIDSTGPVIELGPGTGAITSALVEHGVEQKRLVLVEYNPSFCALLRERYPQ 102

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                 ++Q DA ++    +  +  P   + +    +   +L   
Sbjct: 103 A----TVVQGDAYRLRDSLWDVLPEPATAVVSGLPLVTKPMLTRM 143


>gi|121637871|ref|YP_978094.1| putative methyltransferase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121493518|emb|CAL71992.1| Probable methyltransferase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
          Length = 174

 Score = 56.0 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 24/140 (17%)

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           V+ +E   +   +L++        + ++  DA             P R++AN PY I +R
Sbjct: 52  VVAVELHPRRVGVLRERFPG----ITVVHADA-----ASIRLPGRPFRVVANPPYGISSR 102

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
           LL   ++ ++     + +       +   +  +  S +  R ++  G          +  
Sbjct: 103 LLRTLLAPNSGLVAADLV-------LQRALVCKFASRNARRFTLTVGLM--------LPR 147

Query: 193 HVFFPSPKVTSTVIHFIPHL 212
             F P P V S V+      
Sbjct: 148 RAFLPPPHVDSAVLVVRRRK 167


>gi|110633038|ref|YP_673246.1| ribosomal RNA adenine methylase transferase [Mesorhizobium sp.
           BNC1]
 gi|110284022|gb|ABG62081.1| Ribosomal RNA adenine methylase transferase [Chelativorans sp.
           BNC1]
          Length = 202

 Score = 56.0 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             +++A          V+E+G G G +T+ +L  G +   ++ +E    F   L+D    
Sbjct: 42  TARRMASIVRPEREDLVLELGPGTGVITRSILERGVKPENLVSVEYSLDFVEKLRDDFP- 100

Query: 93  HPNRLEIIQDDALKVD 108
              R+ I+  DA  +D
Sbjct: 101 ---RVNIVHGDAFDLD 113


>gi|260462856|ref|ZP_05811060.1| phospholipid N-methyltransferase [Mesorhizobium opportunistum
           WSM2075]
 gi|259031250|gb|EEW32522.1| phospholipid N-methyltransferase [Mesorhizobium opportunistum
           WSM2075]
          Length = 199

 Score = 56.0 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISS 91
           ++   +    G   G  V+E+G G G  T+ LL  G R+  + +IE D  F  +LK    
Sbjct: 29  SLAALMTRDIGPDTG-PVLELGPGTGPFTRALLARGVREEDLTLIESDSDFAALLKRRFP 87

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
                  + + DA+ +     F   +    ++ LP+ + + 
Sbjct: 88  AA----RVFEMDAVGLRHLSLFQGPAVGAAVSGLPFRLISP 124


>gi|218462395|ref|ZP_03502486.1| phospholipid N-methyltransferase protein [Rhizobium etli Kim 5]
          Length = 170

 Score = 56.0 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E+G G G +T+ +L  G +   ++ IE    F   L      
Sbjct: 42  TARRMASVIDMHSGLPVLELGPGTGAITKAILGRGVKPDNLVAIEYSTDFHQHLLRTYPG 101

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISADTWPP 145
               +  I  DA  LK     F + +    I      N P  +   LL + +    + P
Sbjct: 102 ----VHFINGDAFDLKTTLGAFGDQTFDCVISCIPLLNFPMAMRIALLESLLDRVPYRP 156


>gi|195572095|ref|XP_002104032.1| GD18660 [Drosophila simulans]
 gi|194199959|gb|EDX13535.1| GD18660 [Drosophila simulans]
          Length = 457

 Score = 56.0 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 49/247 (19%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            TV+E+ +GPG  T+ LL   +  R++I++E    F P ++++ + +P R+++ Q D + 
Sbjct: 71  DTVMELNSGPGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGDFVN 130

Query: 107 VD----FEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT--LLFQKEVG 159
           +      +K    S    +++++P    T  +      A    PF++ L   L+FQ  + 
Sbjct: 131 LWKLVYMDKMDGGSRVADLLSDVPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLF 190

Query: 160 -----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFPS--- 198
                E I A                   Y   SVL     +   +  +    F P    
Sbjct: 191 NLGRCEMILAMPPPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQTA 250

Query: 199 ---------PKVTST------VIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQ 239
                     KV S       ++ F P  N         L +L    ++ +  RR  +  
Sbjct: 251 YSPTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYVSRRNRIIP 310

Query: 240 SLKRLGG 246
           +L++   
Sbjct: 311 NLEKWVP 317


>gi|228993576|ref|ZP_04153484.1| RRNA adenine dimethylase [Bacillus pseudomycoides DSM 12442]
 gi|228766167|gb|EEM14813.1| RRNA adenine dimethylase [Bacillus pseudomycoides DSM 12442]
          Length = 196

 Score = 55.6 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+  +    +   ++E+G G G+ T+ ++       I   IE ++ FF  L+     
Sbjct: 27  LAKKMVGAINFEEAKYILELGPGTGSFTREIIKRKKEHTIFILIEINEVFFKKLQKQFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            PN L +I   A  +K   ++         +      ++ T +    +S+       +  
Sbjct: 87  DPNVL-VIHGSAENIKKYIKELQIEKVDYVLSGLPFTSLPTEVSSRILSSVMESLSEDGE 145

Query: 151 TLLFQKEVGER 161
            + FQ  +  +
Sbjct: 146 FITFQYSLARK 156


>gi|86747557|ref|YP_484053.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris HaA2]
 gi|86570585|gb|ABD05142.1| Ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris HaA2]
          Length = 200

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92
           + + +A+         VIE+G G G +T  L+  G   ++++++E +  F  +L++   Q
Sbjct: 43  LARTMAQYVDIHSTGPVIELGPGTGAITNALVEHGVEQKRLVLVEYNPSFCALLRERYPQ 102

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                 ++Q DA ++    +  ++ P   + +    +   +L   
Sbjct: 103 A----TVVQGDAYRLRDSLWDVLAEPATAVVSGLPLVTKPMLTRM 143


>gi|149513367|ref|XP_001516033.1| PREDICTED: similar to transcription factor b1, partial
           [Ornithorhynchus anatinus]
          Length = 87

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 14/86 (16%)

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFN---------ISSPIRIIANLPYNIGTRLLFNWIS 139
           +S   P +L I+  D L  + EK F              I II NLP+++ T L+  W+ 
Sbjct: 2   LSEAAPGKLRIVHGDVLTFNVEKAFPRSLRREWDADPPNIHIIGNLPFSVSTPLIIKWLE 61

Query: 140 --ADTWPPFWES---LTLLFQKEVGE 160
             +    PF      +TL FQKEV E
Sbjct: 62  NISRKDGPFIYGRTQMTLTFQKEVAE 87


>gi|259120697|gb|ACV91990.1| ErmB [synthetic construct]
          Length = 47

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
             QNFL    +L +I +     +  TV EIG G G+LT  L
Sbjct: 6  KYSQNFLTSEKVLNQITKQLNLKETDTVYEIGTGKGHLTTKL 47


>gi|229087365|ref|ZP_04219505.1| RRNA adenine dimethylase [Bacillus cereus Rock3-44]
 gi|228695933|gb|EEL48778.1| RRNA adenine dimethylase [Bacillus cereus Rock3-44]
          Length = 188

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 5/137 (3%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISS 91
            + KK+  +    +   ++E+G G G+ T+ ++       I   IE ++ FF  L+    
Sbjct: 26  RLAKKMVGAINFEEAKYILELGPGTGSFTREIIKRKKEHTIFILIEINEVFFKKLQKQFK 85

Query: 92  QHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
             PN L +I   A  +K   E+         +      ++   +    +S+       + 
Sbjct: 86  DDPNIL-VIHGSAENIKKYIEELQIEKVDYVLSGLPFTSLPREISARILSSVMESLSEDG 144

Query: 150 LTLLFQKEVGERITAQK 166
             + FQ  + ++   Q 
Sbjct: 145 EFITFQYSLAKKAFIQS 161


>gi|195499664|ref|XP_002097046.1| GE26003 [Drosophila yakuba]
 gi|194183147|gb|EDW96758.1| GE26003 [Drosophila yakuba]
          Length = 454

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 49/247 (19%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            TV+E+ +G G  T+ LL   +  R++I++E    F P ++++ + +P R+++ Q D + 
Sbjct: 71  DTVMELNSGAGYFTRHLLDRESQFRRIILLETMDHFMPKIQELHALYPERVKVRQGDFVN 130

Query: 107 VD----FEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT--LLFQKEVG 159
           +      +K    S    +++++P    T  +      A    PF++ L   L+FQ  + 
Sbjct: 131 LWKLVYMDKMDGGSRVADLLSDVPQKAYTDDINMLVFGAVGSYPFFKHLINSLIFQTSLF 190

Query: 160 -----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                E I A                   Y   SVL     K   +  +    F P   V
Sbjct: 191 NLGRCEMILAMPPPIYIHLTCNNEIGYLIYRSTSVLFQILFKHQFIAKVPREDFLPQQTV 250

Query: 202 TS------------------TVIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQ 239
            S                   ++ F P  N         L +L    ++ +  RR  +  
Sbjct: 251 YSPTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYVSRRNRIIP 310

Query: 240 SLKRLGG 246
           +L++   
Sbjct: 311 NLEKWVP 317


>gi|296535666|ref|ZP_06897842.1| N-6 adenine-specific DNA methylase [Roseomonas cervicalis ATCC
           49957]
 gi|296264017|gb|EFH10466.1| N-6 adenine-specific DNA methylase [Roseomonas cervicalis ATCC
           49957]
          Length = 250

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNR 96
           A +  +  G TV+E G G G     +L  +   +V+ IE+D +   + ++ +++  H   
Sbjct: 38  AAAIPARPGETVLEGGCGSGAVFLCLLARVPGLRVVAIERDPELAALARENAARNGHAGA 97

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +E+++ D    D              AN PY
Sbjct: 98  VEVLEGDI--ADPALRRAWPRCDHAFANPPY 126


>gi|261418441|ref|YP_003252123.1| methyltransferase type 11 [Geobacillus sp. Y412MC61]
 gi|319767599|ref|YP_004133100.1| methyltransferase type 11 [Geobacillus sp. Y412MC52]
 gi|261374898|gb|ACX77641.1| Methyltransferase type 11 [Geobacillus sp. Y412MC61]
 gi|317112465|gb|ADU94957.1| Methyltransferase type 11 [Geobacillus sp. Y412MC52]
          Length = 220

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            +I  +     G  V+E G G GNLT+ LL  G ++V  IE      P+ K  + +   R
Sbjct: 40  DRILSTVADKAGQVVLEFGVGTGNLTKKLLERG-KRVYGIEP---SAPMRKKAAEKLNGR 95

Query: 97  LEIIQDDALKVDFEK 111
             I++ D L+     
Sbjct: 96  AVILEGDFLQFPTPP 110


>gi|228999612|ref|ZP_04159189.1| RRNA adenine dimethylase [Bacillus mycoides Rock3-17]
 gi|228760138|gb|EEM09107.1| RRNA adenine dimethylase [Bacillus mycoides Rock3-17]
          Length = 189

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+  +    +   ++E+G G G+ T+ ++       I   IE ++ FF  L+     
Sbjct: 27  LAKKMVGAINFEEAKYILELGPGTGSFTREIIKRKKEHTIFILIEINEVFFKKLQKQFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            PN L +I   A  +K   ++         +      ++ T +    +S+       +  
Sbjct: 87  DPNVL-VIHGSAENIKKYIKELQIEKVDYVLSGLPFTSLPTEVSSRILSSVMESLSEDGE 145

Query: 151 TLLFQKEVGER 161
            + FQ  +  +
Sbjct: 146 FITFQYSLARK 156


>gi|16262542|ref|NP_435335.1| hypothetical protein SMa0168 [Sinorhizobium meliloti 1021]
 gi|307300712|ref|ZP_07580487.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
 gi|14523152|gb|AAK64747.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306904246|gb|EFN34831.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
          Length = 270

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +G   GI+++EIGAG G  T+ LL     +++ +E D++    L+    +    LE+++ 
Sbjct: 43  AGLRRGISILEIGAGTGLATERLLEDRPHRLLAVEPDRRLARFLRGRLDK--EELEVVE- 99

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
                           +++       + +   F+WI A         L
Sbjct: 100 -----------TPFEKLKVPEKSFDLVVSATAFHWIDAAPALRRIHRL 136


>gi|332027650|gb|EGI67718.1| Dimethyladenosine transferase 2, mitochondrial [Acromyrmex
           echinatior]
          Length = 377

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 75/227 (33%), Gaps = 33/227 (14%)

Query: 4   NNKSHSLKTILSHYKIIPKKY----MGQNFLLDLNILKKIAESSGS---LDGITVIEIGA 56
           N     +  +L    I  KK     +  + L+D +   K      +    +   V E+  
Sbjct: 25  NPDVSDIIQLLGDKNISFKKANTTIL--H-LIDKDTAAKYVSLIKNDLSKNMCYVAELNP 81

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII-------------QDD 103
           G G LT+ LL  G   + + E +     IL+ I +++P +L++I              DD
Sbjct: 82  GFGILTRELLKAGVPLIHLYESNLGLHKILEIICTKYPEKLKLISFKSNLFGITRAFYDD 141

Query: 104 -ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
            A K   + F  I S           IG     N  +       + +  + + + V    
Sbjct: 142 KATKKYQDSFKAIESKNWEDETYMQIIGACDDANLFTFIIQNLIFRNGFMFYGRPVFYIA 201

Query: 163 TAQKNSPHYGRLS---------VLTGWRTKATMMFDISPHVFFPSPK 200
                   Y  L+         V+        ++  +S   F P PK
Sbjct: 202 ILPSVWNKYNILTSLNKYTYTKVMFKLMFNYELLGTLSREAFIPWPK 248


>gi|329315326|gb|AEB89739.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 94

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 182 TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQS 240
               M+  + P  F P P V S +I    H   I     +  +           K + + 
Sbjct: 1   MDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVY-------KWVNRE 53

Query: 241 LKRLGGENLLHQAGIETNLRAEN-LSIEDFCRITNILT 277
            + L  +N   QA    N+   N LS E F  I N   
Sbjct: 54  YRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYK 91


>gi|21356125|ref|NP_649971.1| mitochondrial transcription factor B2 [Drosophila melanogaster]
 gi|74869054|sp|Q9VH38|TFB2M_DROME RecName: Full=Dimethyladenosine transferase 2, mitochondrial;
           AltName: Full=Mitochondrial 12S rRNA dimethylase 2;
           AltName: Full=Mitochondrial transcription factor B2;
           AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase 2; AltName:
           Full=d-mtTFB2; Flags: Precursor
 gi|16767892|gb|AAL28164.1| GH04071p [Drosophila melanogaster]
 gi|23170866|gb|AAF54482.2| mitochondrial transcription factor B2 [Drosophila melanogaster]
 gi|46394833|gb|AAS91579.1| mitochondrial transcription factor B2 [Drosophila melanogaster]
 gi|220946652|gb|ACL85869.1| mtTFB2-PA [synthetic construct]
 gi|220956302|gb|ACL90694.1| mtTFB2-PA [synthetic construct]
          Length = 452

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 49/247 (19%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            TV+E+ +G G  T+ LL   +  R++I++E    F P ++++ + +P R+++ Q D + 
Sbjct: 69  DTVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPKIQELHTLYPERVKVRQGDFVN 128

Query: 107 VD----FEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT--LLFQKEVG 159
           +      +K    S    +++++P    T  +      A    PF++ L   L+FQ  + 
Sbjct: 129 LWKLVYMDKMDGGSRVADLLSDVPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLF 188

Query: 160 -----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFPS--- 198
                E I A                   Y   SVL     +   +  +    F P    
Sbjct: 189 NLGRCEMILAMPPPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQMA 248

Query: 199 ---------PKVTST------VIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQ 239
                     KV S       ++ F P  N         L +L    ++ +  RR  +  
Sbjct: 249 YSPTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYVSRRNRIIP 308

Query: 240 SLKRLGG 246
           +L++   
Sbjct: 309 NLEKWVP 315


>gi|307170163|gb|EFN62571.1| Dimethyladenosine transferase 2, mitochondrial [Camponotus
           floridanus]
          Length = 434

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 29/199 (14%)

Query: 29  FLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           +L+D N   K           +   V E+  G G LT  LL      + + E  ++  PI
Sbjct: 101 YLIDRNTAAKYVSLIKNDLLKNTCFVAELSPGYGVLTTELLKADVPLIHLYEAKKELHPI 160

Query: 86  LKDISSQHPNRLEIIQ-------------------DDALKVDFEKFFNISSPIRIIAN-- 124
           L  I + +P RL++                        L+    K +   + ++I+    
Sbjct: 161 LNAIHNMYPGRLDLRNFHLFAIYKLFYKLKDENQVQQILQGVENKKWEDKTSMQIVGATA 220

Query: 125 ---LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
                YN+   LL          P +                  K    Y +  V+    
Sbjct: 221 SKYFFYNLIQSLLLRNCFMTHGRPVFYCAVPPSLWNKCSCGIDNKRMYTYTK--VIFQTM 278

Query: 182 TKATMMFDISPHVFFPSPK 200
               ++  ++ + F P P+
Sbjct: 279 FDYKLLGTLNRNAFLPWPR 297


>gi|119597556|gb|EAW77150.1| transcription factor B2, mitochondrial, isoform CRA_b [Homo
           sapiens]
          Length = 203

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 27/180 (15%)

Query: 131 TRLLFNWISADTWPPF--WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM- 187
            +L ++  S  +   F   E    + +KE  + +    N   Y  LSV+     +  ++ 
Sbjct: 12  WKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLYHVLSVIWQLACEIKVLH 71

Query: 188 ------FDI-----SPHVFFPSPKVTS-----TVIHFIPHLNPI-----PCCLESLKKIT 226
                 FDI               +        +I  IP  N       P        + 
Sbjct: 72  MEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNLFTKNLTPMNYNIFFHLL 131

Query: 227 QEAFGKRRKTL---RQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIA 283
           +  FG+R  T+    +SL  L   ++L Q G + + +  N+  +DF  +   +  ++D A
Sbjct: 132 KHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHPQDFKTLFETIERSKDCA 191


>gi|296535712|ref|ZP_06897882.1| phosphatidyl-N-methylethanolamine N-methyltransferase [Roseomonas
           cervicalis ATCC 49957]
 gi|296263961|gb|EFH10416.1| phosphatidyl-N-methylethanolamine N-methyltransferase [Roseomonas
           cervicalis ATCC 49957]
          Length = 202

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             ++ ++IA          V+E+GAG G L++ LL  G    +++V+E        L+  
Sbjct: 42  SPSLCRRIAAQVTRGPQDYVLELGAGTGVLSRALLDQGVPPERLVVVEIVPDMAAHLRQT 101

Query: 90  SSQHPNRLEIIQDDA 104
                  + ++  DA
Sbjct: 102 LPG----VRVVCGDA 112


>gi|16079782|ref|NP_390606.1| AdoMet-dependent methyltransferase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310664|ref|ZP_03592511.1| hypothetical protein Bsubs1_14906 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314987|ref|ZP_03596792.1| hypothetical protein BsubsN3_14822 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319908|ref|ZP_03601202.1| hypothetical protein BsubsJ_14733 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324189|ref|ZP_03605483.1| hypothetical protein BsubsS_14877 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81815556|sp|O32029|YRRT_BACSU RecName: Full=Uncharacterized methyltransferase YrrT
 gi|2635174|emb|CAB14670.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 213

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +IL  I        G  V+E G G GNLT  LL  G + V  IE       +  D  S 
Sbjct: 35  DHILDAIVR----KSGTHVLEFGPGTGNLTAKLLDAG-KTVFGIEPSPAMRKLASDKLS- 88

Query: 93  HPNRLEIIQDDALKVDFEKF 112
              R EI+  D L      F
Sbjct: 89  --GRTEIVDGDFLTFPEPPF 106


>gi|125555396|gb|EAZ01002.1| hypothetical protein OsI_23036 [Oryza sativa Indica Group]
          Length = 102

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           I   K  GQ+ L +  ++  I E +G     TV+EIG+  G 
Sbjct: 30 GISFDKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGSARGT 72


>gi|209549074|ref|YP_002280991.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534830|gb|ACI54765.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 220

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL++ + L K+ + +       V+E+G G G  T  LL++ A  VI +E D+      K 
Sbjct: 65  FLMEASPLAKLLQLAAITKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDEALAAEAKT 123

Query: 89  ISSQHPNRLEIIQD 102
             + +  ++E++  
Sbjct: 124 QLAGYA-KVEVVSG 136


>gi|307209683|gb|EFN86541.1| Dimethyladenosine transferase 2, mitochondrial [Harpegnathos
           saltator]
          Length = 358

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 92/304 (30%), Gaps = 56/304 (18%)

Query: 29  FLLDLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           +L+D +   + A         D   V E+  G G LT  LL      + + E+++ F PI
Sbjct: 18  YLIDNHAAAEFASMIKDDLLKDTCFVAELNPGVGMLTTELLKADIPLIHLYEENKVFDPI 77

Query: 86  LKDISSQHPNRLEIIQDDALKVD-------------FEKFFNISSPIRIIANLPYNIGTR 132
           L  +S  +P RL+  + + LK++              +K F      R        IG  
Sbjct: 78  LDSLSYTYPGRLDRRRFNLLKINILLHIDKITNRDEMQKVFQGVETKRWENTCMQVIGMT 137

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP----------HYGRLSVLTGWRT 182
               +I    +   + +  + + + V     +                Y  L VL     
Sbjct: 138 STMKFIRHVVYSLLFRNSFMTYGRTVFYMAISPTMWHKCTCDNKQNTMYTTLKVLFQLMF 197

Query: 183 KATMMFDISPHVFFPSPKVTST-------------------VIHFIPHLNPIPCCLES-- 221
              ++  +    F P P                        V+   P  +      +   
Sbjct: 198 DYKLLGKLKRKAFLPWPMKRKKKRRGHRNEILDELDYNEMFVVKLEPKGDMYSILSQEDW 257

Query: 222 --LKKITQEAFGKRRKTLRQSL---KRLGGENLLHQAGIETNLRAE--NLSIEDFCRITN 274
                  +     RR++ R  L   K +    +   A     +  E  +L+ ++F ++  
Sbjct: 258 IIFWYFVRH--TMRRRSNRVILEIEKWIPDSGVKIIAQFNHTIFTEFGDLTPDEFLKLFK 315

Query: 275 ILTD 278
               
Sbjct: 316 EFQS 319


>gi|239834769|ref|ZP_04683097.1| phospholipid N-methyltransferase [Ochrobactrum intermedium LMG
           3301]
 gi|239822832|gb|EEQ94401.1| phospholipid N-methyltransferase [Ochrobactrum intermedium LMG
           3301]
          Length = 258

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDIS 90
            ++ + I        G  VIE+G G G  T  LL  G   R +I+IE +  F  +L+   
Sbjct: 94  PSLARLITREISPGTG-PVIELGPGTGVFTYALLKRGVDPRDLILIEFNPDFVSMLRKRF 152

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            +      +IQ DA ++         S   I++ L
Sbjct: 153 PRS----TVIQADATQLAALDLLPPGSCKNIVSGL 183


>gi|297605841|ref|NP_001057674.2| Os06g0490000 [Oryza sativa Japonica Group]
 gi|255677058|dbj|BAF19588.2| Os06g0490000 [Oryza sativa Japonica Group]
          Length = 102

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           I   K  GQ+ L +  ++  I E +G     TV+EIG+  G 
Sbjct: 30 GISFDKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGSARGT 72


>gi|150389565|ref|YP_001319614.1| ribosomal RNA adenine dimethylase [Alkaliphilus metalliredigens
           QYMF]
 gi|149949427|gb|ABR47955.1| ribosomal RNA adenine dimethylase [Alkaliphilus metalliredigens
           QYMF]
          Length = 185

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI 89
             N+  K+ E     +   ++E G G G  T+ +L        ++ IE +  F+ ILK+ 
Sbjct: 24  SKNLADKMIEDINFSNAECILEYGPGTGIFTEKILQKKKNNTVLLTIEYNDAFYNILKNK 83

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY-NIGTRLLFNWISADTWPPFWE 148
              H N   +    A  ++     NI     +I+ +P+ ++   +  + +S+       E
Sbjct: 84  FEDHQNFFIVKDSAANIIEHLDRHNIKKVDYVISGIPFASLDDNISCDILSSTKEILGNE 143

Query: 149 SLTLLFQKEVGE 160
            + + FQ  + +
Sbjct: 144 GVFITFQYTLFK 155


>gi|241740632|gb|ACS68243.1| phospholipid N-methyltransferase [Bradyrhizobium sp. SEMIA 6144]
          Length = 199

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92
           + + +A          V+E+G G G +T  L+  G   ++++++E +  F  +L+D   Q
Sbjct: 42  LARTMAHYVDIDSDAPVVELGPGTGAITSALVERGVDQKRLVLVEYNPGFCALLRDRYPQ 101

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                +++Q DA ++    +  +S+P   + +    +   +L   
Sbjct: 102 A----KVVQGDAYRLRDTLWNVLSAPASAVVSGLPLVTKPMLTRL 142


>gi|332158500|ref|YP_004423779.1| methyltransferase related protein [Pyrococcus sp. NA2]
 gi|331033963|gb|AEC51775.1| methyltransferase related protein [Pyrococcus sp. NA2]
          Length = 204

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           S G ++G  + ++GAG G L+   L LGA+KV  +E D +   ILK+   +   + E+  
Sbjct: 44  SLGDIEGKVIADLGAGTGVLSYGALLLGAKKVYAVEIDSEAVEILKENLKEFKGKFEVFL 103

Query: 102 DDA 104
            D 
Sbjct: 104 GDV 106


>gi|169260675|gb|ACA52064.1| erythromycin resistance methylase [Streptococcus pyogenes]
 gi|169260679|gb|ACA52067.1| erythromycin resistance methylase [Streptococcus pyogenes]
 gi|169260683|gb|ACA52070.1| erythromycin resistance methylase [Streptococcus pyogenes]
          Length = 67

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
          QNF+     +K+I + +       +IEIG+G G+ T+ L+ +  R V  IE D+   
Sbjct: 10 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLC 65


>gi|209883573|ref|YP_002287430.1| ribosomal RNA adenine methylase transferase [Oligotropha
           carboxidovorans OM5]
 gi|209871769|gb|ACI91565.1| ribosomal RNA adenine methylase transferase [Oligotropha
           carboxidovorans OM5]
          Length = 198

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92
           + + +A    +     VIE+G G G +T  L+  G   +++I++E +  F  +L++   Q
Sbjct: 42  LARTMASYVDTETEAPVIELGPGTGAITDALVAHGVDQKRLILVEFNPGFCALLRERYPQ 101

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                 ++Q DA  +D            +++ LP  +   +L   
Sbjct: 102 A----TVVQGDAYHLDKTLAEIAQPAAAVVSGLPL-VTKPMLTRL 141


>gi|284045843|ref|YP_003396183.1| methyltransferase type 11 [Conexibacter woesei DSM 14684]
 gi|283950064|gb|ADB52808.1| Methyltransferase type 11 [Conexibacter woesei DSM 14684]
          Length = 192

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L+   I+ ++ +      G  V+E+G GPG  T  +L     ++  +E D++    L + 
Sbjct: 19  LVHETIVPEVLDEHDVTLGDDVLELGPGPGV-TTDMLRKRVDRLTALEFDERLHRRLANR 77

Query: 90  SSQHPNRLEIIQDDALKVDFEK 111
            S   N   +++ DA  + FE 
Sbjct: 78  LSGEANT-TVVRGDATAMPFED 98


>gi|183982371|ref|YP_001850662.1| hypothetical protein MMAR_2358 [Mycobacterium marinum M]
 gi|183175697|gb|ACC40807.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 190

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +    G  V+EIG G G   ++L+     K+  +E D      L++   +      II  
Sbjct: 30  ADVDLGDNVLEIGPGYGAFLRVLVDKTP-KLTAVEIDPAMARRLQERYGEQA---RIING 85

Query: 103 D 103
           D
Sbjct: 86  D 86


>gi|182677131|ref|YP_001831277.1| ribosomal RNA adenine methylase transferase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633014|gb|ACB93788.1| ribosomal RNA adenine methylase transferase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 264

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             ++ + +A          +IE+G G G +T+ LL  G    ++I+IE D  F  +LK  
Sbjct: 34  SRSLARMMARYVDLGVPGPIIELGPGTGPITEALLQHGVAPERLILIEYDSAFCQLLKQR 93

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            S     + ++Q DA ++       +  P   I
Sbjct: 94  FSG----VRVVQGDAYRLRQSLGPILEQPAACI 122


>gi|56421078|ref|YP_148396.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Geobacillus
           kaustophilus HTA426]
 gi|81346792|sp|Q5KWV8|Y2543_GEOKA RecName: Full=Uncharacterized methyltransferase GK2543
 gi|56380920|dbj|BAD76828.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Geobacillus
           kaustophilus HTA426]
          Length = 215

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            +I  +     G  V+E G G GNLT+ LL  G ++V  IE      P+ K  + +   R
Sbjct: 35  DRILSTVADKAGQVVLEFGVGTGNLTKKLLERG-KQVYGIEP---SAPMRKKAAEKLSGR 90

Query: 97  LEIIQDDALKVDFEK 111
             I+  D L+     
Sbjct: 91  AVILDGDFLQFPTPP 105


>gi|27375792|ref|NP_767321.1| phospholipid N-methyltransferase [Bradyrhizobium japonicum USDA
           110]
 gi|15341632|emb|CAB91878.1| PpmtA protein [Bradyrhizobium japonicum]
 gi|27348930|dbj|BAC45946.1| phospholipid N-methyltransferase [Bradyrhizobium japonicum USDA
           110]
          Length = 199

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92
           + + +A          V+E+G G G +T  L+  G   ++++++E +  F  +L+D   Q
Sbjct: 42  LARTMAHYVDVNSDAPVVELGPGTGAITSALVERGVDQKRLVLVEYNPGFCALLRDRYPQ 101

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                +++Q DA ++    +  +S+P   + +    +   +L   
Sbjct: 102 A----KVVQGDAYRLRDTLWNVLSAPASAVVSGLPLVTKPMLTRL 142


>gi|218295159|ref|ZP_03495995.1| methyltransferase small [Thermus aquaticus Y51MC23]
 gi|218244362|gb|EED10887.1| methyltransferase small [Thermus aquaticus Y51MC23]
          Length = 374

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L+ +  +  SL G  V+++GAG G LT  L  LGA +V  +E D      L+    ++ 
Sbjct: 219 LLEALVTAVPSLKGRRVLDLGAGYGALTLPLARLGA-EVTAVEDDLVSVLSLRRSLEENG 277

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                +  D      E          I+ N P+++G  ++ +
Sbjct: 278 LEARALHSDV----DEALTPEERFDIIVTNPPFHVGGAVILD 315


>gi|115522375|ref|YP_779286.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris BisA53]
 gi|115516322|gb|ABJ04306.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris BisA53]
          Length = 200

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A          VIE+G G G +T  L+  G   +++++IE +  F  +L+D   Q
Sbjct: 43  LARTMANYVDIHSDAPVIELGPGTGAITHALIAHGVDPKRLVLIEYNPSFCALLRDRYPQ 102

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                 ++Q DA ++    +  +S     + +    +   +L   
Sbjct: 103 A----TVVQGDAYRLRDSLWKVMSERASAVVSGLPLVTKPMLTRL 143


>gi|229542991|ref|ZP_04432051.1| Methyltransferase type 12 [Bacillus coagulans 36D1]
 gi|229327411|gb|EEN93086.1| Methyltransferase type 12 [Bacillus coagulans 36D1]
          Length = 213

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            KI ++        V+E G G GNLT  LL  G  K+I IE         + I+ +    
Sbjct: 35  DKILDAVRDRATGFVVEFGPGTGNLTGKLLEKG-LKIIGIEPSANM----RKIAQKKHPD 89

Query: 97  LEIIQDDALKVDFEKFFN 114
           ++II  D L    ++  +
Sbjct: 90  VKIIDGDFLNFHVQEKAD 107


>gi|14521938|ref|NP_127415.1| methyltransferase related protein [Pyrococcus abyssi GE5]
 gi|5459158|emb|CAB50644.1| Methyltransferase related protein [Pyrococcus abyssi GE5]
          Length = 208

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           + G ++G  + ++GAG G L+   L+LGA+KV  +E D+    ILK    +   + E+  
Sbjct: 42  TLGDIEGKVIADLGAGTGVLSYGALSLGAKKVYAVEVDEDAVEILKTNLKKFEGKFEVFI 101

Query: 102 DDA 104
            D 
Sbjct: 102 GDV 104


>gi|317057019|ref|YP_004105486.1| type 12 methyltransferase [Ruminococcus albus 7]
 gi|315449288|gb|ADU22852.1| Methyltransferase type 12 [Ruminococcus albus 7]
          Length = 250

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I   +    G  V+E+G G G  T  +L  G      IE    F  +L+       N   
Sbjct: 29  IIAKADIGRGTKVLELGPGTGQATDPILDTGCDY-TAIELGSNFAEVLRKKYGGRGN-YR 86

Query: 99  IIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +I DD +  DF  + F+       I  +P  +     F  +++ 
Sbjct: 87  LINDDFITHDFNGEKFDFIYSAATIQWIPEIVAFGKTFELLNSG 130


>gi|218906056|ref|YP_002453890.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           AH820]
 gi|218539826|gb|ACK92224.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           AH820]
          Length = 192

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLSEEVSKRILNNTMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ    ++   Q
Sbjct: 146 FITFQYSFVKKGFIQ 160


>gi|47568001|ref|ZP_00238707.1| phospholipid N-methyltransferase, putative [Bacillus cereus G9241]
 gi|47555304|gb|EAL13649.1| phospholipid N-methyltransferase, putative [Bacillus cereus G9241]
          Length = 192

 Score = 54.0 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 10/138 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKVKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKN 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISA-DTWPP 145
             N + ++   A  +K   E+F        +      +LP  +  R+L N + A      
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145

Query: 146 FWESLTLLFQKEVGERIT 163
           F      L +KE  +   
Sbjct: 146 FITFQYSLVKKEFIQHFF 163


>gi|237816472|ref|ZP_04595465.1| PmtA, phospholipid N-methyltransferase [Brucella abortus str. 2308
           A]
 gi|237788539|gb|EEP62754.1| PmtA, phospholipid N-methyltransferase [Brucella abortus str. 2308
           A]
          Length = 204

 Score = 54.0 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E G   G +T+ +L  G +   +  IE    F   L      
Sbjct: 45  TARRMASVIDVNSGLPVLEFGPDTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 104

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + II+ D   +D             I       N P +    L+ + ++       
Sbjct: 105 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 160

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T      V           +Y     +         + ++ P   +
Sbjct: 161 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 197


>gi|62290967|ref|YP_222760.1| phospholipid N-methyltransferase [Brucella abortus bv. 1 str.
           9-941]
 gi|82700878|ref|YP_415452.1| SAM-binding domain-containing protein [Brucella melitensis biovar
           Abortus 2308]
 gi|189025181|ref|YP_001935949.1| SAM (and some other nucleotide) binding motif [Brucella abortus
           S19]
 gi|254690263|ref|ZP_05153517.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           6 str. 870]
 gi|254694750|ref|ZP_05156578.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           3 str. Tulya]
 gi|254696379|ref|ZP_05158207.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           2 str. 86/8/59]
 gi|254731293|ref|ZP_05189871.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           4 str. 292]
 gi|256258516|ref|ZP_05464052.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           9 str. C68]
 gi|260546232|ref|ZP_05821972.1| SAM binding domain-containing protein [Brucella abortus NCTC 8038]
 gi|260755801|ref|ZP_05868149.1| phospholipid N-methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260759024|ref|ZP_05871372.1| phospholipid N-methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260760749|ref|ZP_05873092.1| phospholipid N-methyltransferase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884826|ref|ZP_05896440.1| phospholipid N-methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261215076|ref|ZP_05929357.1| phospholipid N-methyltransferase [Brucella abortus bv. 3 str.
           Tulya]
 gi|297247354|ref|ZP_06931072.1| phosphatidylethanolamine N-methyltransferase [Brucella abortus bv.
           5 str. B3196]
 gi|62197099|gb|AAX75399.1| PmtA, phospholipid N-methyltransferase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616979|emb|CAJ12087.1| SAM (and some other nucleotide) binding motif [Brucella melitensis
           biovar Abortus 2308]
 gi|189020753|gb|ACD73475.1| SAM (and some other nucleotide) binding motif [Brucella abortus
           S19]
 gi|260096339|gb|EEW80215.1| SAM binding domain-containing protein [Brucella abortus NCTC 8038]
 gi|260669342|gb|EEX56282.1| phospholipid N-methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260671181|gb|EEX58002.1| phospholipid N-methyltransferase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675909|gb|EEX62730.1| phospholipid N-methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260874354|gb|EEX81423.1| phospholipid N-methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916683|gb|EEX83544.1| phospholipid N-methyltransferase [Brucella abortus bv. 3 str.
           Tulya]
 gi|297174523|gb|EFH33870.1| phosphatidylethanolamine N-methyltransferase [Brucella abortus bv.
           5 str. B3196]
          Length = 199

 Score = 54.0 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E G   G +T+ +L  G +   +  IE    F   L      
Sbjct: 40  TARRMASVIDVNSGLPVLEFGPDTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 99

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + II+ D   +D             I       N P +    L+ + ++       
Sbjct: 100 ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 155

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T      V           +Y     +         + ++ P   +
Sbjct: 156 LMQITYGPLPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 192


>gi|194902568|ref|XP_001980721.1| GG17302 [Drosophila erecta]
 gi|190652424|gb|EDV49679.1| GG17302 [Drosophila erecta]
          Length = 454

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 49/247 (19%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            TV+E+ +G G  T+ LL   +  R++I++E    F P ++++ + +P R+++ Q D + 
Sbjct: 71  DTVMELNSGAGYFTRHLLDRESQFRRIILLESMDHFMPRIQELHALYPERVKVRQGDFVN 130

Query: 107 VD----FEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLT--LLFQKEVG 159
           +      +K    S    ++ ++P    T  +      A     F++ L   L+FQ  + 
Sbjct: 131 LWKLVYMDKMDGGSRVADLLGDVPQKAFTDDINMLVFGAVGSYQFFKHLINSLIFQTSLF 190

Query: 160 -----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFFPS--- 198
                E I A                   Y   SVL     +   +  +    F P    
Sbjct: 191 NLGRCEMILAMPPPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQTV 250

Query: 199 --P-------KVTST------VIHFIPHLNPIPC----CLESLKKITQEAFGKRRKTLRQ 239
             P       KV S       ++ F P  N         L +L    ++ +  RR  +  
Sbjct: 251 YNPTKSSKLVKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYVSRRNRIIP 310

Query: 240 SLKRLGG 246
           +L++   
Sbjct: 311 NLEKWVP 317


>gi|321312253|ref|YP_004204540.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis
           BSn5]
 gi|320018527|gb|ADV93513.1| putative AdoMet-dependent methyltransferase [Bacillus subtilis
           BSn5]
          Length = 213

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             I ++  S  G  V+E G G GNLT  LL  G + V  IE       +  D  S    R
Sbjct: 35  DHILDAIVSKSGTHVLEFGPGTGNLTAKLLDAG-KTVFGIEPSPAMRKLASDKLS---GR 90

Query: 97  LEIIQDDALKVDFEKF 112
            EI+  D L      F
Sbjct: 91  SEIVDGDFLTFPEPPF 106


>gi|241204402|ref|YP_002975498.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858292|gb|ACS55959.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 220

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL++ + L K+ + +       V+E+G G G  T  LL++ A  VI +E D+      K 
Sbjct: 65  FLMEASPLAKLLQLAAITKDDFVLEVGCGTGY-TSALLSIVAGSVIALECDETLATEAKA 123

Query: 89  ISSQHPNRLEIIQD 102
             + +  ++E++  
Sbjct: 124 QLAGYA-KVEVVAG 136


>gi|153953362|ref|YP_001394127.1| CbiT [Clostridium kluyveri DSM 555]
 gi|219853991|ref|YP_002471113.1| hypothetical protein CKR_0648 [Clostridium kluyveri NBRC 12016]
 gi|146346243|gb|EDK32779.1| CbiT [Clostridium kluyveri DSM 555]
 gi|219567715|dbj|BAH05699.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 186

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 38  KI--AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94
           +I         +  T+++IGAG G+L+  +        V  +E+D++   IL+    +  
Sbjct: 22  RILSIAKMEIKEDDTLLDIGAGTGSLSIQMSKCSPLGSVTAVERDREALEILEKNKEKFK 81

Query: 95  N-RLEIIQDDALKVDFE 110
              L I++ DAL V+  
Sbjct: 82  AYNLNIVEGDALSVEPS 98


>gi|291485133|dbj|BAI86208.1| hypothetical protein BSNT_03961 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 213

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             I ++  S  G  V+E G G GNLT  LL  G + V  IE       +  D  S    R
Sbjct: 35  DHILDAIVSKSGTHVLEFGPGTGNLTAKLLDAG-KTVFGIEPSPAMRKLASDKLS---GR 90

Query: 97  LEIIQDDALKVDFEKF 112
            EI+  D L      F
Sbjct: 91  SEIVDGDFLTFPEPPF 106


>gi|190889984|ref|YP_001976526.1| phospholipid N-methyltransferase [Rhizobium etli CIAT 652]
 gi|190695263|gb|ACE89348.1| phospholipid N-methyltransferase protein [Rhizobium etli CIAT 652]
          Length = 199

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 14/128 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             K++A       G+ V+E+G G G +T+ +L  G +   ++ IE    F   L      
Sbjct: 42  TAKRMASVIDMHSGLPVLELGPGTGAITKAILGRGVKPDNLVAIEYSTDFHQHL---LRA 98

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISADTWPPF 146
           +P  +  I  DA  LK     F + +    I      N P  +   LL + +  D  PP 
Sbjct: 99  YPG-VHFINGDAFDLKTTLGAFGDQTFDCVISCIPLLNFPMAMRVSLLESLL--DRLPPG 155

Query: 147 WESLTLLF 154
              + + +
Sbjct: 156 RPVVQISY 163


>gi|154253443|ref|YP_001414267.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157393|gb|ABS64610.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Parvibaculum lavamentivorans DS-1]
          Length = 220

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           FL++  +  K+ + +       V+++G G G  T +L  L A  V+ +E D+    
Sbjct: 63  FLMEPRVFAKMVQLAEIGPEDLVLDVGCGTGYSTAVLARL-AGTVVALECDENLAA 117


>gi|169260687|gb|ACA52073.1| erythromycin resistance methylase [Streptococcus pyogenes]
          Length = 66

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
          QNF+     +K+I + +       +IEIG+G G+ T+ L+ +  R V  IE D+  F
Sbjct: 10 QNFITSKKHVKEILKYTNINKQDKIIEIGSGKGHFTKELVEMSQR-VNAIEIDEGLF 65


>gi|209551894|ref|YP_002283811.1| phospholipid N-methyltransferase protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537650|gb|ACI57585.1| phospholipid N-methyltransferase protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 199

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             K++A       G+ V+E+G G G +T+ +L  G +   ++ IE    F   L      
Sbjct: 42  TAKRMASVIDMHSGLPVLELGPGTGAITKAILGRGVKPDNLVAIEYSTDFHQHL---LRA 98

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISADTWPPF 146
           +P  +  I  DA  LK     F + +    I      N P  +   LL + +        
Sbjct: 99  YPG-VHFINGDAFDLKTTLGTFGDQTFDCVISCIPLLNFPMAMRVSLLESLLDRLPAGRP 157

Query: 147 WESLTLL 153
              ++  
Sbjct: 158 VVQISYG 164


>gi|228948576|ref|ZP_04110855.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228811075|gb|EEM57417.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 200

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 35  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 95  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLSEEVSKRILNNTMEAIHENGE 153

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 154 FITFQYSLVKKGFIQ 168


>gi|206896140|ref|YP_002247766.1| menaquinone biosynthesis methyltransferase UbiE [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738757|gb|ACI17835.1| menaquinone biosynthesis methyltransferase UbiE [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 199

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88
            D   +K I        G  V+++G G G L   LL       +V+ ++  +    + ++
Sbjct: 22  HDPRKIKDIMNILKPKPGDHVLDVGCGTGVLIPYLLESIGPTGRVVGLDYSKNMLRLARE 81

Query: 89  IS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
               Q    ++ +  D +  + +  F++        + P   G+
Sbjct: 82  KFPKQTYPNVDFVLADVMAFETDDLFDLVICYSSFPHFPDKEGS 125


>gi|222084598|ref|YP_002543127.1| phosphatidylethanolamine
           N-methyltransferase/phosphatidyl-N-methylethanolamine
           N-methyltransferase protein [Agrobacterium radiobacter
           K84]
 gi|221722046|gb|ACM25202.1| phosphatidylethanolamine
           N-methyltransferase/phosphatidyl-N-methylethanolamine
           N-methyltransferase protein [Agrobacterium radiobacter
           K84]
          Length = 197

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
             +K+A       G+ V+E+G G G +T+ +L  G   + ++ IE    F+  L    + 
Sbjct: 40  TARKMASVINLQSGLPVLELGPGTGAITKAILARGVEPQNLVAIEYSTDFYNHLVRRYAG 99

Query: 93  HPNRLEIIQDDALKVD 108
               +  I  DA  +D
Sbjct: 100 ----VNFINGDAFDLD 111


>gi|302551017|ref|ZP_07303359.1| O-methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302468635|gb|EFL31728.1| O-methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 406

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS 91
            +++ ++ + +G  +G  V+EIG G G  T +L   L    V  IE D        D   
Sbjct: 129 PSLIVRMLDVAGISEGHKVLEIGTGTGYSTAILCSRLSDNNVYSIEYDPGLAATAADHIH 188

Query: 92  QHPNRLEIIQDDAL--KVDFEKFFNISSPIRIIANLP 126
                  +I  D L    D  ++ +I +   +    P
Sbjct: 189 AAGYHPTLITGDGLAGHKDDAEYDHIVATCAVRHIPP 225


>gi|228929877|ref|ZP_04092892.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229124394|ref|ZP_04253582.1| RRNA adenine dimethylase [Bacillus cereus 95/8201]
 gi|228659046|gb|EEL14698.1| RRNA adenine dimethylase [Bacillus cereus 95/8201]
 gi|228829793|gb|EEM75415.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 200

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 35  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 95  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLSEEVSKRILNNTMEAIHENGE 153

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 154 FITFQYSLVKKGFIQ 168


>gi|262037783|ref|ZP_06011225.1| methyltransferase [Leptotrichia goodfellowii F0264]
 gi|261748255|gb|EEY35652.1| methyltransferase [Leptotrichia goodfellowii F0264]
          Length = 243

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILK---KIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           T++   KII +    QNF LD  +L    KI     +     V++IG G G +  +L   
Sbjct: 13  TVIKRMKIIQRNDF-QNFTLDTVLLADFTKI-----NRKTKKVLDIGTGCGIIPILLAEK 66

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +++ IE  ++   I +     +  R+ II DD    +++K F       I+ N PY
Sbjct: 67  SKAEIVGIELQKEMADIAERNVQNYEERINIINDDI--KNYQKIFKKDEFDCIVTNPPY 123


>gi|322788205|gb|EFZ13987.1| hypothetical protein SINV_10284 [Solenopsis invicta]
          Length = 444

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 66/200 (33%), Gaps = 30/200 (15%)

Query: 30  LLDLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           L+D +   K           +   + E+  G G LT+ LL  G   V + E + +   +L
Sbjct: 116 LIDKDTAAKYVSLIKNDLLKNMCYIAELNPGFGVLTRELLEAGVPLVHLYEGNLKLHEVL 175

Query: 87  KDISSQHPNRLEII-----------------------QDDALKVDFEKFFNISSPIRIIA 123
           + I +++  ++ +I                         ++ K    K +   + +++I 
Sbjct: 176 ETICTKYSGKVNLISSKYSNLFGITRAYYDDKVIDEKYQNSFKAMESKNWEDKTYMQVIG 235

Query: 124 -NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER---ITAQKNSPHYGRLSVLTG 179
            N    + T ++ + +    +  +   +  +           +    N   Y    V+  
Sbjct: 236 ANDSKYLITFIIHSLLFRHGFMFYGRPIFYIAILPSLWHKYNMCTFTNKKLYTHTKVMFK 295

Query: 180 WRTKATMMFDISPHVFFPSP 199
                 ++  ++   F P P
Sbjct: 296 LMFNCELLGTLNRKAFIPWP 315


>gi|41615127|ref|NP_963625.1| hypothetical protein NEQ337 [Nanoarchaeum equitans Kin4-M]
 gi|40068851|gb|AAR39186.1| NEQ337 [Nanoarchaeum equitans Kin4-M]
          Length = 193

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKD 88
          L D   +  I          T++EIG G G+LT  L  L    K+IV EKD ++ PILK+
Sbjct: 25 LKD---IGYIIARVLPEKDWTIVEIGPGSGSLTMYLAYLVYPNKIIVYEKDDRWIPILKE 81

Query: 89 ISSQ 92
            S+
Sbjct: 82 NLSK 85


>gi|150398726|ref|YP_001329193.1| hypothetical protein Smed_3542 [Sinorhizobium medicae WSM419]
 gi|150030241|gb|ABR62358.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 200

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 12/127 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E+G G G +T+ +L  G    K+I IE    F+  LK     
Sbjct: 42  TARRMASVVDPDSGLPVLELGPGTGVITKAILERGIEPEKLISIEYSTDFYNQLKAQF-- 99

Query: 93  HPNRLEIIQDDALKVDF------EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
             + ++ I  DA  +D       ++ F+       + N P +    LL + +S   +   
Sbjct: 100 --DGVQFINGDAFDLDRTLGSLKDQQFDSVISAVPLLNFPMHRRVELLEDLLSRIPFGRP 157

Query: 147 WESLTLL 153
              ++  
Sbjct: 158 VIQISYG 164


>gi|190575773|ref|YP_001973618.1| putative protein-L-isoaspartate O-methyltransferase
           [Stenotrophomonas maltophilia K279a]
 gi|190013695|emb|CAQ47330.1| putative protein-L-isoaspartate O-methyltransferase
           [Stenotrophomonas maltophilia K279a]
          Length = 215

 Score = 52.9 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLE 98
           ++     G  V+EIG G G L+  +  L AR V+ +E D +     +    +S     + 
Sbjct: 73  QALDLQPGDEVLEIGTGSGFLSACIGAL-ARDVLSLEIDPELATAARARLDASGLGTNVR 131

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +   DAL    E+ F++      +  +P    +
Sbjct: 132 VEVADALSWQTERRFDVICVTGAVDVVPSQFAS 164


>gi|196033189|ref|ZP_03100602.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           W]
 gi|195994618|gb|EDX58573.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           W]
          Length = 192

 Score = 52.9 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLSEEVSKRILNNTMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|116251793|ref|YP_767631.1| protein-l-isoaspartate o-methyltransferase [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115256441|emb|CAK07525.1| putative protein-L-isoaspartate O-methyltransferase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 221

 Score = 52.9 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL++ + L K+ + +       V+E+G G G  T  LL++ A  VI +E D+      K 
Sbjct: 66  FLMEASPLAKLLQLAAITKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDETLATEAKA 124

Query: 89  ISSQHPNRLEIIQD 102
             + +  ++E++  
Sbjct: 125 QLAGYA-KVEVVTG 137


>gi|294814990|ref|ZP_06773633.1| protein-L-isoaspartate D-aspartate O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
 gi|326443361|ref|ZP_08218095.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
 gi|294327589|gb|EFG09232.1| protein-L-isoaspartate D-aspartate O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 389

 Score = 52.9 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++     +  G  V+E+G G G    +L    GA+ V+ IE D+      +    
Sbjct: 103 PSVVFRMLRDLDAHPGDRVLEVGTGTGWNAALLAHRTGAQNVVTIEVDRTVAERARTTLE 162

Query: 92  QHPNRLEIIQDD 103
           +    + +I  D
Sbjct: 163 RFGTAVRVIHGD 174


>gi|254387624|ref|ZP_05002863.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
 gi|197701350|gb|EDY47162.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 370

 Score = 52.9 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++     +  G  V+E+G G G    +L    GA+ V+ IE D+      +    
Sbjct: 84  PSVVFRMLRDLDAHPGDRVLEVGTGTGWNAALLAHRTGAQNVVTIEVDRTVAERARTTLE 143

Query: 92  QHPNRLEIIQDD 103
           +    + +I  D
Sbjct: 144 RFGTAVRVIHGD 155


>gi|257091499|ref|ZP_05585860.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis CH188]
 gi|257000311|gb|EEU86831.1| ribosomal RNA adenine dimethylase [Enterococcus faecalis CH188]
          Length = 133

 Score = 52.9 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 11/104 (10%)

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233
           L +L   +     +  +    F P PKV S +I    H   +P     L       F   
Sbjct: 29  LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV-- 82

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRITN 274
            K + +  ++L  +N  HQA         NLS    E    I N
Sbjct: 83  SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTVTYEQVLSIFN 124


>gi|146337331|ref|YP_001202379.1| phospholipid N-methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146190137|emb|CAL74129.1| phospholipid N-methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 200

 Score = 52.9 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A+         VIE+G G G +T  L+  G   ++++++E +  F  +L+D    
Sbjct: 43  LARTMAQYVDPHGTGPVIELGPGTGAITAALVEHGIDQKRLVLVEYNPSFCALLRDRYPH 102

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                +++Q DA ++    +  + +P   + +    +   +L   
Sbjct: 103 A----KVVQGDAYRLRDTLWNVLGAPASAVVSGLPLVTKPMLTRM 143


>gi|189459461|ref|ZP_03008246.1| hypothetical protein BACCOP_00085 [Bacteroides coprocola DSM
          17136]
 gi|189463546|ref|ZP_03012331.1| hypothetical protein BACCOP_04269 [Bacteroides coprocola DSM
          17136]
 gi|189429744|gb|EDU98728.1| hypothetical protein BACCOP_04269 [Bacteroides coprocola DSM
          17136]
 gi|189433830|gb|EDV02815.1| hypothetical protein BACCOP_00085 [Bacteroides coprocola DSM
          17136]
          Length = 140

 Score = 52.9 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
          P ++ GQ+F +D  ++K     +   +  TV++IGAG G LT  L
Sbjct: 55 PVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHL 99


>gi|169883510|gb|ACA97850.1| putative dimethyladenosine transferase [VK grapevine yellows
           phytoplasma type A]
          Length = 396

 Score = 52.9 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 8/101 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             DG  ++E+GAG GN+T+ L+   G + VI +E D     +L+D        L++I+ D
Sbjct: 280 LNDGEKILELGAGSGNVTKYLIKKFGVKNVIALEYDNHLCQVLRDKYKG----LQVIEGD 335

Query: 104 A---LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           A   +K+  +K   I     I++ LP ++ T      ++ +
Sbjct: 336 ACNFIKLLQDKNVGIDKIKGIVSTLPLSVFTPEKLKELNDN 376


>gi|119716439|ref|YP_923404.1| methyltransferase type 11 [Nocardioides sp. JS614]
 gi|119537100|gb|ABL81717.1| Methyltransferase type 11 [Nocardioides sp. JS614]
          Length = 203

 Score = 52.9 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 21/172 (12%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              G  V+EIG GPG  T +++   GA  V  ++ D +     +     H +R+ +   D
Sbjct: 35  LPAGSRVLEIGCGPGYGTSLIIDYFGAGHVDAVDLDPRMIGKARRRLRHHSDRVRLAVGD 94

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           A   D      +       A   + I   +     +            + + +EV     
Sbjct: 95  A--TDLHAALGVGEE-AYDAAFDFAIVHHIEDWRAALAEITRVLRPGGVFYFEEVTAHAL 151

Query: 164 AQKN------SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
           A+ +       P   R +           ++++  H   P      TVI   
Sbjct: 152 ARPSYRALFDHPERDRFTAE-------EFLYELPRHGLRP----LGTVIRIR 192


>gi|210624462|ref|ZP_03294327.1| hypothetical protein CLOHIR_02284 [Clostridium hiranonis DSM 13275]
 gi|210153074|gb|EEA84080.1| hypothetical protein CLOHIR_02284 [Clostridium hiranonis DSM 13275]
          Length = 149

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
           N+P+ I T+++   +  +   P    + L+ +K   +R           +LS+L   +  
Sbjct: 1   NIPFYITTKIIKKLLLEELNSP--TDMWLVMEKGSAKRFMGIPRE---SKLSLLLKTKFD 55

Query: 184 ATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
             ++   +   F P P V   +++F           +   + T  +F  +      +L+ 
Sbjct: 56  IKIVHYFNREDFHPMPSVDCVLVYF-KRKYKYDISKDEWNEYT--SFISKS---INNLRD 109

Query: 244 LGGENLLHQ----AGIETNLRAENLSIEDFCRITNI 275
           +  +N +H      GI  N  +E +S  D+ ++   
Sbjct: 110 VFTKNQIHAVIKYLGINLNNISE-VSYNDWIQLFRY 144


>gi|153624|gb|AAA26877.1| ermAM protein A [Plasmid pAM-beta-1]
          Length = 112

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 11/104 (10%)

Query: 174 LSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKR 233
           L +L   +     +  +    F P PKV S +I    H   +P     L       F   
Sbjct: 8   LGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKL----YTYFV-- 61

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSI---EDFCRITN 274
            K + +  ++L  +N  HQA         NLS    E    I N
Sbjct: 62  SKWVNREYRQLFTKNQFHQAMKHAK--VNNLSTVTYEQVLSIFN 103


>gi|297529293|ref|YP_003670568.1| methyltransferase type 11 [Geobacillus sp. C56-T3]
 gi|297252545|gb|ADI25991.1| Methyltransferase type 11 [Geobacillus sp. C56-T3]
          Length = 260

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            +I  +     G  V+E G G GNLT+ LL  G ++V  IE      P+ K  + +   R
Sbjct: 80  DRILSTVADKAGQVVLEFGVGTGNLTKKLLERG-KRVYGIEP---SAPMRKKAAEKLSGR 135

Query: 97  LEIIQDDALKVDFEK 111
             ++  D L+     
Sbjct: 136 AVMLDGDFLQFPTPP 150


>gi|312195457|ref|YP_004015518.1| methyltransferase type 11 [Frankia sp. EuI1c]
 gi|311226793|gb|ADP79648.1| Methyltransferase type 11 [Frankia sp. EuI1c]
          Length = 195

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G   G  V+E+G GPG LT  +L     ++  +E D+     L    +   + +E++  D
Sbjct: 29  GVDLGDDVLEVGPGPG-LTTDVLRTLTGRLTAVEVDRDLADALAGRLAG--SNVEVVSAD 85

Query: 104 A 104
           A
Sbjct: 86  A 86


>gi|90420764|ref|ZP_01228670.1| putative ribosomal RNA adenine methylase transferase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335055|gb|EAS48816.1| putative ribosomal RNA adenine methylase transferase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 213

 Score = 52.5 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNR 96
           +   +       ++E+G G G +T+ LL  G    ++  IE D +F   L+         
Sbjct: 49  MVRHATIDLDGPILELGPGLGVVTRTLLEHGVAPERITSIEYDSEFARQLQRRFPG---- 104

Query: 97  LEIIQDDALKVD 108
           + +I  D   +D
Sbjct: 105 VNVINGDGFDLD 116


>gi|297154271|gb|ADI03983.1| O-methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 735

 Score = 52.5 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           +S G   G  V+E G GPG +T  L   LG   V  +E D       ++  ++  +R  +
Sbjct: 460 QSLGLAAGDRVLESGTGPGLVTAALCEILGDTAVTTVEADPHLAEAARERLARLGHRPRV 519

Query: 100 IQDDALKVDFEKFFN 114
           ++ D L     + F+
Sbjct: 520 VRGDGLAGRPGERFD 534


>gi|229118318|ref|ZP_04247674.1| RRNA adenine dimethylase [Bacillus cereus Rock1-3]
 gi|228665148|gb|EEL20634.1| RRNA adenine dimethylase [Bacillus cereus Rock1-3]
          Length = 200

 Score = 52.5 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 35  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 95  EKN-VIVVHGSAENIKKYMEEFNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 153

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 154 FITFQYSLVKKGFIQ 168


>gi|169883512|gb|ACA97851.1| putative dimethyladenosine transferase [VK grapevine yellows
           phytoplasma type B]
          Length = 394

 Score = 52.5 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 8/101 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             DG  ++E+GAG GN+T+ L+   G + VI +E D     +L+D        L++I+ D
Sbjct: 278 LNDGEKILELGAGSGNVTKYLIHKFGVKNVIALEYDNHLCQVLRDKYEG----LQVIEGD 333

Query: 104 A---LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           A   +K+  +K   I     I++ LP ++ T      ++ +
Sbjct: 334 ACNFIKLLKDKKVGIDKIKGIVSTLPLSVFTPEKLKELNDN 374


>gi|168704986|ref|ZP_02737263.1| ribosomal RNA adenine dimethylase domain protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 239

 Score = 52.5 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQH 93
            +K+ +        +++E+GAG G +T  L  L     +++VIE D      L+    + 
Sbjct: 73  ARKLLDGIDWAHARSIVELGAGTGPITAELVRLAHPKARLVVIELDPVLCGRLQARFRES 132

Query: 94  PNRLEIIQDDALKV 107
           PN +E++  DA K 
Sbjct: 133 PN-VEVVLGDATKF 145


>gi|324999722|ref|ZP_08120834.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Pseudonocardia sp. P1]
          Length = 210

 Score = 52.5 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 9/141 (6%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPIL 86
           FL    + +++A+         V+E+GAGPG L + +        + + IE D +    L
Sbjct: 24  FLTGRRLCRQLAQVVPHGTNGVVVELGAGPGVLAEPIRARLGPNARYLAIEIDPELVAHL 83

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           ++    H   LE+++ D    D E+  + +  I  +      +   +    +        
Sbjct: 84  RE----HKPWLEVVEGDV--ADLERILDEAG-IDRVDAFVSTLPWAVFPQTLRLSVMGVI 136

Query: 147 WESLTLLFQKEVGERITAQKN 167
              L       +     A  N
Sbjct: 137 ARRLVPDGVMSMIITWMALPN 157


>gi|296446333|ref|ZP_06888278.1| Methyltransferase type 12 [Methylosinus trichosporium OB3b]
 gi|296256106|gb|EFH03188.1| Methyltransferase type 12 [Methylosinus trichosporium OB3b]
          Length = 223

 Score = 52.5 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDIS 90
             + + +A          V+E+G G G +TQ LL  G  A +++++E + +F  +L+   
Sbjct: 59  PMLARAMASYVDLSRPGPVVELGPGTGPVTQALLEHGVPASRLLLVEYEARFCDLLRQRF 118

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLP 126
                 ++++Q DA  +       +  PI  ++++LP
Sbjct: 119 PG----VQVVQGDAYSLKQTLDGKVEGPISTVVSSLP 151


>gi|158335755|ref|YP_001516927.1| methyltransferase [Acaryochloris marina MBIC11017]
 gi|158305996|gb|ABW27613.1| methyltransferase, putative [Acaryochloris marina MBIC11017]
          Length = 263

 Score = 52.5 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 21/130 (16%)

Query: 30  LLDLNILKKI--------AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKD 79
           L  L  ++KI         +S+G       +E+GAG G++TQ +  +   K  V+ ++ D
Sbjct: 17  LKRLQAIEKIFDPTSHQRLKSTGINTNWRCLEVGAGAGSITQWMAGMVGEKGQVVAVDLD 76

Query: 80  QQFFPILKDISSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            +F   L+         +E+++ D   L +D + F  + +   +I N         L   
Sbjct: 77  TRFVANLE------AGNVEVVEGDIQHLPLDKQSFDLVHARYVLIHNPD---AHAFLSKL 127

Query: 138 ISADTWPPFW 147
           +       + 
Sbjct: 128 LELVKPGGWI 137


>gi|229105464|ref|ZP_04236106.1| RRNA adenine dimethylase [Bacillus cereus Rock3-28]
 gi|228677931|gb|EEL32166.1| RRNA adenine dimethylase [Bacillus cereus Rock3-28]
          Length = 192

 Score = 52.1 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|228961101|ref|ZP_04122727.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229153034|ref|ZP_04281215.1| RRNA adenine dimethylase [Bacillus cereus m1550]
 gi|228630454|gb|EEK87102.1| RRNA adenine dimethylase [Bacillus cereus m1550]
 gi|228798544|gb|EEM45531.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 192

 Score = 52.1 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|169839698|ref|ZP_02872886.1| dimethyladenosine transferase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 56

 Score = 52.1 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           + +A+     +  LS+L G      ++FD  P  F P PKVTS+VI      N +
Sbjct: 1   KFSAKDGESEFCALSILAGLVGGCELLFDAGPSCFNPPPKVTSSVIRLQKSRNLV 55


>gi|66796390|gb|AAY56462.1| S-adenosylmethionine-6-N',N'-adenosyl rRNA dimethyltransferase
          [Haemophilus influenzae]
          Length = 33

 Score = 52.1 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESS 43
           H     +K  GQNFL D ++++ I  + 
Sbjct: 5  KHLGHTARKRFGQNFLHDTSVIQGIVAAI 33


>gi|281357548|ref|ZP_06244036.1| Methyltransferase type 11 [Victivallis vadensis ATCC BAA-548]
 gi|281316151|gb|EFB00177.1| Methyltransferase type 11 [Victivallis vadensis ATCC BAA-548]
          Length = 209

 Score = 52.1 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRL 97
            ++        V+E+G G G +TQ LL       + + +E D  F   L+          
Sbjct: 40  VKAIEPEKCRCVVELGPGTGVITQYLLNSIDPQSRFLAVEIDPVFHENLQKRFPGTA--- 96

Query: 98  EIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGTR 132
            I + DA  +  + +         +++ LP+ + T 
Sbjct: 97  -IHRGDAEDLGKWLQPQKSGLADAVVSGLPWTLFTE 131


>gi|23502975|ref|NP_699102.1| phospholipid N-methyltransferase [Brucella suis 1330]
 gi|23349013|gb|AAN31017.1| phospholipid N-methyltransferase [Brucella suis 1330]
          Length = 198

 Score = 52.1 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 26/170 (15%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E   G G +T+ +L  G +   +  IE    F   L      
Sbjct: 40  TARRMASVIDVNSGLPVLE-RPGTGVITKAILKHGVKPADLYSIEYSHDFVEHLNKTFPD 98

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRLLFNWISADTWPPF 146
               + II+ D   +D             I       N P +    L+ + ++       
Sbjct: 99  ----VNIIEGDVFDLDTALGDRKGQKFDCIISAVPMLNFPMDRRVELVESLLTHIPHGRP 154

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
              +T      V           +Y     +         + ++ P   +
Sbjct: 155 LMQITYGPSPPV------PAGRGNY-----VVQHYDFV--VRNVPPAQLW 191


>gi|302544725|ref|ZP_07297067.1| putative O-methyltransferase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462343|gb|EFL25436.1| putative O-methyltransferase [Streptomyces himastatinicus ATCC
           53653]
          Length = 378

 Score = 52.1 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 15/152 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ + A+ +    G  V+E+G G G  T +L    GA  V+ IE D           S
Sbjct: 102 PSLVVRTAQVAELRPGQRVLEVGTGTGYSTAILCHRLGAGNVVSIEYDADLAARAAVHLS 161

Query: 92  QHPNRLEIIQDDAL-----KVDFEKFFNISSPIRIIANLPYN------IGTRLLFNWISA 140
           +      +   D L       D++      S   I  +  +       I T +    ++A
Sbjct: 162 EAGCAPTLAVGDGLQGCRKHADYDAIIATCSVRSIPHSWFWQLNDGGSITTTVSGWMLAA 221

Query: 141 DTWPPFWES---LTLLFQKEVGERITAQKNSP 169
                  +        F  +    + A+ +  
Sbjct: 222 GMIRLVLDDEGTAHGRFTGDTITYMLARPHER 253


>gi|52140677|ref|YP_086152.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Bacillus cereus E33L]
 gi|51974146|gb|AAU15696.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Bacillus cereus E33L]
          Length = 192

 Score = 52.1 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK    +
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKF-K 85

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +   + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 86  YEQNVIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|332367103|gb|EGJ44840.1| methyltransferase domain protein [Streptococcus sanguinis SK1059]
          Length = 264

 Score = 52.1 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD-ISSQHPNRLEII 100
           +   D + ++EIG+GPG +T+ L  L    ++  +E D  F    K  +   +  R+EI+
Sbjct: 34  ADPKDKLKILEIGSGPGVITKKLCELFPNAQITCLELDSDFVEYSKTALPDDYKERVEIL 93

Query: 101 QDDALKVDFEK 111
           + D  ++D ++
Sbjct: 94  KGDITQIDLDE 104


>gi|229099306|ref|ZP_04230237.1| RRNA adenine dimethylase [Bacillus cereus Rock3-29]
 gi|228684124|gb|EEL38071.1| RRNA adenine dimethylase [Bacillus cereus Rock3-29]
          Length = 192

 Score = 52.1 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EKN-VIVVHGSAENIKKYMEEFNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|86355973|ref|YP_467865.1| phosphatidylethanolamine
           N-methyltransferase/phosphatidyl-N-methylethanolaminen-
           methyltransfer ase protein [Rhizobium etli CFN 42]
 gi|86280075|gb|ABC89138.1| probable phosphatidylethanolamine
           N-methyltransferase/phosphatidyl-N-methylethanolamineN-
           methyltransferase protein [Rhizobium etli CFN 42]
          Length = 199

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             K++A       G+ V+E+G G G +T+ +L  G +   ++ IE    F   L      
Sbjct: 42  TAKRMASVIDMHSGLPVLELGPGTGAITKAILGRGVKPENLVAIEYSTDFHQHLLRTYPG 101

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISA 140
               +  I  DA  LK     + + +    I      N P  +   LL + +  
Sbjct: 102 ----VHFINGDAFDLKTTLGDYSDRTFDCVISCIPLLNFPMAMRVSLLESLLDR 151


>gi|222084743|ref|YP_002543272.1| phospholipid N-methyltransferase protein [Agrobacterium radiobacter
           K84]
 gi|221722191|gb|ACM25347.1| phospholipid N-methyltransferase protein [Agrobacterium radiobacter
           K84]
          Length = 232

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + + + +    LDG  V+E+G G G  T+ LL  G     V E D       ++  + 
Sbjct: 32  ERLARLMTQEIEPLDG-PVLELGPGTGVFTRALLARG-----VSECDLTLIEFGEEFVAP 85

Query: 93  HPNRL---EIIQDDALKVDFEKFFNISSPIRIIANLP 126
              R     ++Q DA ++     F  +    +++ LP
Sbjct: 86  LRGRFPQARVVQMDAAQLGQCGLFADTPFGAVVSGLP 122


>gi|290581183|ref|YP_003485575.1| glucose-inhibited division protein B [Streptococcus mutans NN2025]
 gi|254998082|dbj|BAH88683.1| glucose-inhibited division protein B [Streptococcus mutans NN2025]
          Length = 263

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD-ISSQHPNRLEII 100
           +   D + ++EIG+GPG +T+ L  L    ++  +E D  F    K  +   +  R+EI+
Sbjct: 33  ADPKDKLKILEIGSGPGVITKKLCELFPNAQITCLELDSDFVEYSKTALPDDYKERVEIL 92

Query: 101 QDDALKVDFEK 111
           + D  ++D ++
Sbjct: 93  KGDITQIDLDE 103


>gi|228942011|ref|ZP_04104554.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974942|ref|ZP_04135503.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981535|ref|ZP_04141832.1| RRNA adenine dimethylase [Bacillus thuringiensis Bt407]
 gi|228778214|gb|EEM26484.1| RRNA adenine dimethylase [Bacillus thuringiensis Bt407]
 gi|228784795|gb|EEM32813.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817680|gb|EEM63762.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942613|gb|AEA18509.1| ribosomal RNA adenine dimethylase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 192

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ FF  LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFFKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+         +      ++   +    +S           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEELNIECIDYVLSGLPFTSLPEEVSKRILSNAMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|209964857|ref|YP_002297772.1| phospholipid N-methyltransferase, putative [Rhodospirillum centenum
           SW]
 gi|209958323|gb|ACI98959.1| phospholipid N-methyltransferase, putative [Rhodospirillum centenum
           SW]
          Length = 198

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP 94
           + IA +        V+E G G G +T+ LL  G  A ++   E D      L+       
Sbjct: 44  RLIARNVRREPDEVVVEYGGGTGPITRCLLEAGIPASRLFTAEIDPNLANYLRRQFPD-- 101

Query: 95  NRLEIIQDDA 104
             + I++ D 
Sbjct: 102 --VTILEGDV 109


>gi|70915228|ref|XP_732101.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56502654|emb|CAH85694.1| hypothetical protein PC301640.00.0 [Plasmodium chabaudi chabaudi]
          Length = 77

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 5  NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVI 52
          +   +LKT L   +  PK+ +GQN+L D NI+KK+ ++        V+
Sbjct: 22 DDEQNLKTSLPSREFKPKRSLGQNYLRDENIIKKMVQAIELDASQFVL 69


>gi|241207271|ref|YP_002978367.1| phosphatidylethanolamine N-methyltransferase or
           phosphatidyl-N-methylethanolaminen-methyltransferase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861161|gb|ACS58828.1| phosphatidylethanolamine N-methyltransferase or
           phosphatidyl-N-methylethanolaminen-methyltransferase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 199

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             K++A       G+ V+E+G G G +T+ +L  G R   ++ IE    F   L+     
Sbjct: 42  TAKRMASVVDIHSGLPVLELGPGTGAITKAILGRGVRPENLVAIEYSTDFHKHLQRT--- 98

Query: 93  HPNRLEIIQDDA 104
           +P  +  I  DA
Sbjct: 99  YPG-VHFINGDA 109


>gi|30264896|ref|NP_847273.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Bacillus anthracis str. Ames]
 gi|47530382|ref|YP_021731.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187712|ref|YP_030965.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Bacillus anthracis str. Sterne]
 gi|65322194|ref|ZP_00395153.1| COG3963: Phospholipid N-methyltransferase [Bacillus anthracis str.
           A2012]
 gi|165869678|ref|ZP_02214336.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0488]
 gi|167633818|ref|ZP_02392141.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0442]
 gi|167638070|ref|ZP_02396348.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0193]
 gi|170685918|ref|ZP_02877141.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0465]
 gi|170705590|ref|ZP_02896054.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0389]
 gi|177651208|ref|ZP_02934039.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0174]
 gi|190567104|ref|ZP_03020019.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227817623|ref|YP_002817632.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. CDC 684]
 gi|229600455|ref|YP_002869101.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0248]
 gi|254687636|ref|ZP_05151492.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254725202|ref|ZP_05186985.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A1055]
 gi|254736940|ref|ZP_05194646.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254741975|ref|ZP_05199662.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. Kruger B]
 gi|254754427|ref|ZP_05206462.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. Vollum]
 gi|254757260|ref|ZP_05209287.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. Australia 94]
 gi|30259571|gb|AAP28759.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. Ames]
 gi|47505530|gb|AAT34206.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49181639|gb|AAT57015.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. Sterne]
 gi|164714507|gb|EDR20026.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0488]
 gi|167513887|gb|EDR89255.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0193]
 gi|167530619|gb|EDR93321.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0442]
 gi|170129715|gb|EDS98578.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0389]
 gi|170670382|gb|EDT21122.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0465]
 gi|172083034|gb|EDT68096.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0174]
 gi|190561608|gb|EDV15578.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227005706|gb|ACP15449.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. CDC 684]
 gi|229264863|gb|ACQ46500.1| ribosomal RNA adenine dimethylase domain protein [Bacillus
           anthracis str. A0248]
          Length = 192

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|9966391|gb|AAG10237.1|AF201699_2 phospholipid N-methyltransferase [Sinorhizobium meliloti]
          Length = 200

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 12/127 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E+G G G +T+ +L  G    K++ IE    F+  LK     
Sbjct: 42  TARRMASVVDPESGLPVLELGPGTGVITKAILERGIEPEKLVSIEYSTDFYKQLK----A 97

Query: 93  HPNRLEIIQDDALKVDFE-KFFNISSPIRIIA-----NLPYNIGTRLLFNWISADTWPPF 146
           H + +  I  DA  +      F       +I+     N P +    L+ + +S   +   
Sbjct: 98  HFDGVHFINGDAFDLSRTLGAFKDQQFDSVISAVPLLNFPMHRRVELIEDLLSRIPFGRP 157

Query: 147 WESLTLL 153
              ++  
Sbjct: 158 VVQISYG 164


>gi|15964087|ref|NP_384440.1| hypothetical protein SMc00414 [Sinorhizobium meliloti 1021]
 gi|307301231|ref|ZP_07580993.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
 gi|307317902|ref|ZP_07597339.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83]
 gi|15073263|emb|CAC41771.1| Phospholipid N-methyltransferase [Sinorhizobium meliloti 1021]
 gi|306896304|gb|EFN27053.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83]
 gi|306903687|gb|EFN34274.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
          Length = 200

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 12/127 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E+G G G +T+ +L  G    K++ IE    F+  LK     
Sbjct: 42  TARRMASVVDPESGLPVLELGPGTGVITKAILERGIEPEKLVSIEYSTDFYKQLK----A 97

Query: 93  HPNRLEIIQDDALKVDFE-KFFNISSPIRIIA-----NLPYNIGTRLLFNWISADTWPPF 146
           H + +  I  DA  +      F       +I+     N P +    L+ + +S   +   
Sbjct: 98  HFDGVHFINGDAFDLSRTLGAFKDQQFDSVISAVPLLNFPMHRRVELIEDLLSRIPFGRP 157

Query: 147 WESLTLL 153
              ++  
Sbjct: 158 VVQISYG 164


>gi|13474481|ref|NP_106049.1| phospholipid N-methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14025234|dbj|BAB51835.1| mlr5374 [Mesorhizobium loti MAFF303099]
          Length = 199

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISS 91
           ++   +    G   G  V+E+G G G  T+ LL+ G R+  + +IE D  F  +L     
Sbjct: 29  SLAALMTRDIGPETG-PVLELGPGTGPFTRALLSRGVREDDLTLIESDPDFAALLMRRFP 87

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
                  I + DA+ +     F        ++ LP  + + 
Sbjct: 88  AA----RIFEMDAVGLRHLSLFPGPVVGAAVSGLPVRLISP 124


>gi|229062521|ref|ZP_04199834.1| RRNA adenine dimethylase [Bacillus cereus AH603]
 gi|228716804|gb|EEL68495.1| RRNA adenine dimethylase [Bacillus cereus AH603]
          Length = 192

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ +   IE ++ FF  LK     
Sbjct: 27  LAKKMVDVIDFNRAKCIVELGPGTGVFTKEIMKRKKKETMFLLIEINEVFFKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+         +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKTYMEELNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHESGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|167463250|ref|ZP_02328339.1| hypothetical protein Plarl_11926 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 498

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 11  KTILSHYKIIPKKY-MGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLT 67
           K  L+   ++ +K  +GQ FL   ++ K +A            +++ GAG G LT  +L 
Sbjct: 10  KERLAVNPLLKRKSELGQ-FLTPSSVAKYMASFFDKSKLYEPKILDAGAGIGALTSAVLE 68

Query: 68  L-------GARKVIVIEKDQQFFPILKDISSQHPNRLE----IIQDDALKVDFEKFFNIS 116
                      +V V+E D+     L+   S   ++L     ++ DD ++       N  
Sbjct: 69  RIVAEKTSNCAEVTVVEIDEVLRERLQSTLSLFEDKLNLKRGVVPDDFIEWATNHLLNED 128

Query: 117 SPIRIIA-NLPYNIGTRLLFNWISADTWPPFWESL 150
           S +        + I         S+        S+
Sbjct: 129 SLLAEKKIRFTHAILNPPYKKIASSSRHRKLIRSV 163


>gi|257869905|ref|ZP_05649558.1| adenine methylase [Enterococcus gallinarum EG2]
 gi|257804069|gb|EEV32891.1| adenine methylase [Enterococcus gallinarum EG2]
          Length = 168

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 24/164 (14%)

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           + +   D LK     F N     R+  N+P+NI T ++   +           + L+ + 
Sbjct: 1   MRVYHVDVLKY---SFPNKDIQYRVFGNIPFNISTDIVRKVVFHSRAY----QIDLIVEY 53

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI- 215
               R+              L     +  ++  I  + F P P V   ++  +   N   
Sbjct: 54  GFALRLMDTSRLLGA-----LLLLEVEVHILKKIPNYYFHPKPNVQCALVRLVRRSNRFS 108

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLH----QAGI 255
              +E  KK  +         +  ++  +  +N L     +AGI
Sbjct: 109 KKEIEEYKKFIEA-------WISGNIHLIFTKNQLRRSLAKAGI 145


>gi|322382731|ref|ZP_08056581.1| hypothetical protein PL1_0381 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153300|gb|EFX45738.1| hypothetical protein PL1_0381 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 501

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 11  KTILSHYKIIPKKY-MGQNFLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLT 67
           K  L+   ++ +K  +GQ FL   ++ K +A            +++ GAG G LT  +L 
Sbjct: 13  KERLAVNPLLKRKSELGQ-FLTPSSVAKYMASFFDKSKLYEPKILDAGAGIGALTSAVLE 71

Query: 68  L-------GARKVIVIEKDQQFFPILKDISSQHPNRLE----IIQDDALKVDFEKFFNIS 116
                      +V V+E D+     L+   S   ++L     ++ DD ++       N  
Sbjct: 72  RIVAEKTSNCAEVTVVEIDEVLRERLQSTLSLFEDKLNLKRGVVPDDFIEWATNHLLNED 131

Query: 117 SPIRIIA-NLPYNIGTRLLFNWISADTWPPFWESL 150
           S +        + I         S+        S+
Sbjct: 132 SLLAEKKIRFTHAILNPPYKKIASSSRHRKLIRSV 166


>gi|229198997|ref|ZP_04325683.1| RRNA adenine dimethylase [Bacillus cereus m1293]
 gi|228584463|gb|EEK42595.1| RRNA adenine dimethylase [Bacillus cereus m1293]
          Length = 200

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    +  I   IE ++ F   LK     
Sbjct: 35  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKGTIFLLIEINEVFCKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 95  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 153

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 154 FITFQYSLVKKGFIQ 168


>gi|126725880|ref|ZP_01741722.1| Protein-L-isoaspartate carboxylmethyltransferase [Rhodobacterales
           bacterium HTCC2150]
 gi|126705084|gb|EBA04175.1| Protein-L-isoaspartate carboxylmethyltransferase [Rhodobacterales
           bacterium HTCC2150]
          Length = 268

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LLD   + K+ ++        V++IG G G  +  LL   +  V+ +E + +     + +
Sbjct: 112 LLDPRTMGKMLDALDVQPDDVVLDIGCGLGY-SSALLARMSDAVVAVEDNAELAAEAQRL 170

Query: 90  SSQ-HPNRLEIIQDD 103
            S+   +   + + D
Sbjct: 171 LSEVGADNAAVFEGD 185


>gi|116250101|ref|YP_765939.1| phospholipid N-methyltransferase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254749|emb|CAK05823.1| putative phospholipid N-methyltransferase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 199

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             K++A       G+ V+E+G G G +T+ +L  G R   ++ IE    F   L+     
Sbjct: 42  TAKRMASVVDIHSGLPVLELGPGTGAITKAILGRGVRPENLVAIEYSTDFHKHLQRTYPG 101

Query: 93  HPNRLEIIQDDA 104
               +  I  DA
Sbjct: 102 ----VHFINGDA 109


>gi|229048536|ref|ZP_04194097.1| RRNA adenine dimethylase [Bacillus cereus AH676]
 gi|229147402|ref|ZP_04275751.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST24]
 gi|296505293|ref|YP_003666993.1| ribosomal RNA adenine dimethylase [Bacillus thuringiensis BMB171]
 gi|228636084|gb|EEK92565.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST24]
 gi|228722800|gb|EEL74184.1| RRNA adenine dimethylase [Bacillus cereus AH676]
 gi|296326345|gb|ADH09273.1| ribosomal RNA adenine dimethylase [Bacillus thuringiensis BMB171]
          Length = 192

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ FF  LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFFKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+         +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEELNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|307942724|ref|ZP_07658069.1| phospholipid N-methyltransferase [Roseibium sp. TrichSKD4]
 gi|307773520|gb|EFO32736.1| phospholipid N-methyltransferase [Roseibium sp. TrichSKD4]
          Length = 218

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISS 91
           ++ +K+A          V+E+G G G++T+ LL  G ++  + VIE   +F  +L+    
Sbjct: 52  DLARKMASFVDVTPHARVLELGPGTGSVTKALLARGLKRSDLTVIEYSPEFCHLLQSRFL 111

Query: 92  QHPNRLEIIQDD--ALKVDFEKFFNISSPIRIIANLP 126
                + +++ D  AL+       N      II++LP
Sbjct: 112 G----IFVVEGDAYALRNTLGLGPNEGRFDAIISSLP 144


>gi|228910682|ref|ZP_04074493.1| RRNA adenine dimethylase [Bacillus thuringiensis IBL 200]
 gi|228848950|gb|EEM93793.1| RRNA adenine dimethylase [Bacillus thuringiensis IBL 200]
          Length = 200

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ +   IE ++ FF  LK     
Sbjct: 35  LAKKMVDVIDFNRAKCIVELGPGTGAFTKEIMKRKKKETLFLLIEINEVFFKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + +I   A  +K   E+         +      ++   +    +++          
Sbjct: 95  EQN-VIVIHGSAENIKKYREQLNIECIDYILSGLPFTSLPEEVSKRILNSVMETIHENGE 153

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 154 FITFQYSLVKKGFIQ 168


>gi|196249006|ref|ZP_03147706.1| Methyltransferase type 11 [Geobacillus sp. G11MC16]
 gi|196211882|gb|EDY06641.1| Methyltransferase type 11 [Geobacillus sp. G11MC16]
          Length = 215

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            +I  +     G  V+E G G GNLT+ LL  G + V  IE      P+ K  + +   R
Sbjct: 35  DRILSTVADKAGQVVLEFGIGTGNLTKKLLERG-KTVYGIEP---SAPMRKKAAEKLGER 90

Query: 97  LEIIQDDALKVDFEK 111
             I+  D L+     
Sbjct: 91  AVIMDGDFLQFPLPP 105


>gi|229093939|ref|ZP_04225030.1| RRNA adenine dimethylase [Bacillus cereus Rock3-42]
 gi|228689421|gb|EEL43235.1| RRNA adenine dimethylase [Bacillus cereus Rock3-42]
          Length = 200

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 35  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 95  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 153

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 154 FITFQYSLVKKGFIQ 168


>gi|49481426|ref|YP_038873.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|49332982|gb|AAT63628.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 192

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         +IE+G G G  T+ ++    ++ I   IE ++ F   LK    +
Sbjct: 27  LAKKMVDVIDFNKAKCIIELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKF-K 85

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +   + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 86  YEQNVIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|75759278|ref|ZP_00739377.1| rRNA adenine dimethylase family protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74493227|gb|EAO56344.1| rRNA adenine dimethylase family protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 201

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ +   IE ++ FF  LK     
Sbjct: 36  LAKKMVDVIDFNRAKCIVELGPGTGAFTKEIMKRKKKETLFLLIEINEVFFKELKRKFKD 95

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + +I   A  +K   E+         +      ++   +    +++          
Sbjct: 96  EQN-VIVIHGSAENIKKYREQLNIECIDYILSGLPFTSLPEEVSKRILNSVMETIHENGE 154

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 155 FITFQYSLVKKGFIQ 169


>gi|228903345|ref|ZP_04067476.1| RRNA adenine dimethylase [Bacillus thuringiensis IBL 4222]
 gi|228967945|ref|ZP_04128955.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791726|gb|EEM39318.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228856306|gb|EEN00835.1| RRNA adenine dimethylase [Bacillus thuringiensis IBL 4222]
          Length = 200

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ +   IE ++ FF  LK     
Sbjct: 35  LAKKMVDVIDFNRAKCIVELGPGTGAFTKEIMKRKKKETLFLLIEINEVFFKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + +I   A  +K   E+         +      ++   +    +++          
Sbjct: 95  EQN-VIVIHGSAENIKKYREQLNIECIDYILSGLPFTSLPEEVSKRILNSVMETIHENGE 153

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 154 FITFQYSLVKKGFIQ 168


>gi|138896113|ref|YP_001126566.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|229892086|sp|A4IR67|Y2476_GEOTN RecName: Full=Uncharacterized methyltransferase GTNG_2476
 gi|134267626|gb|ABO67821.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 215

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            +I  +     G  V+E G G GNLT+ LL  G + V  IE      P+ K  + +   R
Sbjct: 35  DRILSTVADKAGQVVLEFGIGTGNLTKKLLERG-KTVYGIEP---SAPMRKKAAEKLGER 90

Query: 97  LEIIQDDALKVDFEK 111
             I+  D L+     
Sbjct: 91  AVIMDGDFLQFPLPP 105


>gi|118617185|ref|YP_905517.1| hypothetical protein MUL_1534 [Mycobacterium ulcerans Agy99]
 gi|118569295|gb|ABL04046.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 190

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +    G   +EIG G G   ++L+     K+  +E D      L++   +      II  
Sbjct: 30  ADVDLGDNALEIGPGYGAFLRVLVDKTP-KLTAVEIDPAMARRLQERYGEQA---RIING 85

Query: 103 D 103
           D
Sbjct: 86  D 86


>gi|157107889|ref|XP_001649984.1| RrnaAD, ribosomal RNA adenine dimethylase, putative [Aedes aegypti]
 gi|108868622|gb|EAT32847.1| RrnaAD, ribosomal RNA adenine dimethylase, putative [Aedes aegypti]
          Length = 426

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 50/234 (21%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G      ++E+  G G LT+ LL      +++ E ++ F   L  +      ++++   D
Sbjct: 110 GLEPDRLLVEVNPGMGLLTKELLK-KTDNLMLYETEEGFESELNKLLVPENRKVQLRFVD 168

Query: 104 ALKVDFEKFFN----ISSPIRIIANLPYNIGTR---LLFNWISADTWPPFWESLTLLF-- 154
                   + +         +++  LP     +   + F   S      F++SL      
Sbjct: 169 FNNYWRHSYVDTLDQGGRVEKLLEGLPRGTRWKDEEVNFRLFSVIGSLQFFKSLINSVAN 228

Query: 155 QKEVG-----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           QK +      E + A                   Y   SVL     +   +  I    F 
Sbjct: 229 QKGLFGLGRCEMVLAVPPLFYVHLTCRKDAGYKLYRSSSVLFQIFFEHEFIAKIPRKDFL 288

Query: 197 PSPKVTST--------------------VIHFIPHLNPIPCCLESLKKITQEAF 230
           P P + S                     ++  +P  +    CL    ++   AF
Sbjct: 289 PWPSIHSARGRNQTQYRRLGLVGTDELYLMRVVPRRDLFDYCLPDNLRLL--AF 340


>gi|42784029|ref|NP_981276.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Bacillus cereus ATCC 10987]
 gi|42739959|gb|AAS43884.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           ATCC 10987]
          Length = 192

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + +K+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LARKMVDVIDFHRAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMESIHENGK 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|307326502|ref|ZP_07605697.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
 gi|306887910|gb|EFN18901.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
          Length = 378

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 15/152 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ + A+ +    G  V+E+G G G  T +L    GA  V+ IE D            
Sbjct: 102 PSLVVRTAQVAELRSGQKVLEVGTGTGYSTAVLCHRLGAGNVVSIEYDSVLAARAAAHLG 161

Query: 92  QHPNRLEIIQDDALK-----VDFEKFFNISSPIRIIANLPYN------IGTRLLFNWISA 140
           +      +   D LK      D++      S   I  +  +       I T +    ++A
Sbjct: 162 EAGYTPTLAVGDGLKGCKEHADYDAIVATCSVRSIPHSWFWQLNDGGTITTTISGWMLAA 221

Query: 141 DTWPPFWES---LTLLFQKEVGERITAQKNSP 169
                  +        F  +    + A+ +  
Sbjct: 222 GMIRLALDDEGTAHGRFTSDTITYMLARPHER 253


>gi|20089993|ref|NP_616068.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
 gi|19914958|gb|AAM04548.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
          Length = 275

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-KDQQFFPIL 86
           NF    NI+K+I           V++IGAGPG LT  L  +  + V  +E  D   + + 
Sbjct: 48  NF--SRNIIKRI----DFTPDSKVLDIGAGPGTLTIPLADM-VKHVTAVEPSDGMLYCLK 100

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           ++I ++  N +  IQ    K +     ++ +P  ++
Sbjct: 101 ENIKAKELNNVSWIQK---KWEDIDLKDLDAPYDVV 133


>gi|163737696|ref|ZP_02145113.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Phaeobacter gallaeciensis BS107]
 gi|161389222|gb|EDQ13574.1| putative protein-L-isoaspartate O-methyltransferase [Phaeobacter
           gallaeciensis BS107]
          Length = 217

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL+   L KI ++        V+++  G G  T ++  + A+ VI +E D+      +D 
Sbjct: 61  LLEPRTLAKILDAIDVQPDELVLDVACGLGYSTAVIARV-AQMVIGVEDDETLASEAQDQ 119

Query: 90  SSQHPNRLEIIQDDALK 106
            S       I+   AL 
Sbjct: 120 LSAVGADNAIVHTGALD 136


>gi|113868832|ref|YP_727321.1| protein-L-isoaspartate carboxylmethyltransferase [Ralstonia
           eutropha H16]
 gi|113527608|emb|CAJ93953.1| Protein-L-isoaspartate carboxylmethyltransferase [Ralstonia
           eutropha H16]
          Length = 217

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  +I +         V+EIGAG G +   LL   AR V+ ++      P 
Sbjct: 57  GQNMLA-PRVEARILQDLAVRKHENVLEIGAGSGYM-AALLANRARHVLTVDI----VPE 110

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA------NLPYNIGTRL 133
           L +++  +     +   D  + +    ++ ++P  +I        +P +I +++
Sbjct: 111 LVELARTNLANAGVTNVDVAEGNAADGWSAAAPYDVICISGSLPAIPQSILSQV 164


>gi|229175547|ref|ZP_04303057.1| RRNA adenine dimethylase [Bacillus cereus MM3]
 gi|228607943|gb|EEK65255.1| RRNA adenine dimethylase [Bacillus cereus MM3]
          Length = 200

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 35  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 95  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKGILNNVMEAIHENGE 153

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 154 FITFQYSLVKKGFIQ 168


>gi|39938792|ref|NP_950558.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M]
 gi|39721901|dbj|BAD04391.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-M]
          Length = 455

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G   G  ++E+GAG GN+T+ L+   GA+ VI +E D++   +L++        L +I+ 
Sbjct: 294 GLKTGEKILELGAGSGNVTKYLVQKFGAQNVITLEYDKELCNVLRNKFPG----LTVIEG 349

Query: 103 DALKV 107
           DA   
Sbjct: 350 DACNF 354


>gi|228936141|ref|ZP_04098944.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823486|gb|EEM69315.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 200

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 35  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 95  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLPEEVSKRILNNTMEAIHENGE 153

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 154 FITFQYSLVKKGFIQ 168


>gi|17545416|ref|NP_518818.1| protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           GMI1000]
 gi|17427708|emb|CAD14227.1| probable protein-l-isoaspartate o-methyltransferase [Ralstonia
           solanacearum GMI1000]
          Length = 216

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  ++ +         V+E+GAG G +  +L   G R V  ++   +    
Sbjct: 57  GQNMLP-PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RHVTTVDIAPELVAF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +D  +++    ++++Q DA +      +++   I +  ++P
Sbjct: 115 ARDNLARNGVTNVDVVQGDAGQGWGNSLYDV---ICVSGSVP 153


>gi|148251811|ref|YP_001236396.1| phospholipid N-methyltransferase [Bradyrhizobium sp. BTAi1]
 gi|146403984|gb|ABQ32490.1| phospholipid N-methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 200

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A+         VIE+G G G +T  L+  G   ++++++E +  F  +L+D   Q
Sbjct: 43  LARTMAQYVDPHGTGPVIELGPGTGAITNALVQHGIDQKRLVLVEYNPGFCALLRDRYPQ 102

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                +++Q DA ++    +  +  P   + +    +   +L   
Sbjct: 103 A----KVVQGDAYRLRDTLWNVLGMPASAVVSGLPLVTKPMLTRM 143


>gi|118479950|ref|YP_897101.1| ribosomal RNA adenine dimethylase [Bacillus thuringiensis str. Al
           Hakam]
 gi|229187094|ref|ZP_04314243.1| RRNA adenine dimethylase [Bacillus cereus BGSC 6E1]
 gi|118419175|gb|ABK87594.1| ribosomal RNA adenine dimethylase [Bacillus thuringiensis str. Al
           Hakam]
 gi|228596403|gb|EEK54074.1| RRNA adenine dimethylase [Bacillus cereus BGSC 6E1]
          Length = 200

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 35  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 95  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLPEEVSKRILNNTMEAIHENGE 153

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 154 FITFQYSLVKKGFIQ 168


>gi|307319123|ref|ZP_07598553.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83]
 gi|306895230|gb|EFN25986.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83]
          Length = 269

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 14/103 (13%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           GI+++EIGAG G  T+ LL     +++ +E D++    L+    +    LE+++      
Sbjct: 48  GISILEIGAGTGLATERLLEDRPHRLLAVEPDRRLARFLRGRLDK--EELEVVE------ 99

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
                      +++       + +   F+WI A         L
Sbjct: 100 ------TPFEKLKVPEKSFDLVVSATAFHWIDAAPALRRIHRL 136


>gi|163740720|ref|ZP_02148113.1| Protein-L-isoaspartate carboxylmethyltransferase [Phaeobacter
           gallaeciensis 2.10]
 gi|161385711|gb|EDQ10087.1| Protein-L-isoaspartate carboxylmethyltransferase [Phaeobacter
           gallaeciensis 2.10]
          Length = 217

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL+   L KI ++        V+++  G G  T ++  + A+ VI +E D+      +D 
Sbjct: 61  LLEPRTLAKILDAIDVQPDELVLDVACGLGYSTAVIARV-AQMVIGVEDDETMASEAQDQ 119

Query: 90  SSQHPNRLEIIQDDALK 106
            S       I+   AL 
Sbjct: 120 LSAVGADNAIVHTGALD 136


>gi|228923583|ref|ZP_04086863.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836052|gb|EEM81413.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 200

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 5/133 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 35  LAKKMVDVIDFNRAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 95  EQN-VIVVHGSAENIKKYMEEFNIKCIDYILSGLPFTSLPEEVSKRILNNAMEVIHENGE 153

Query: 151 TLLFQKEVGERIT 163
            + FQ  + ++  
Sbjct: 154 FITFQYSLVKKGF 166


>gi|299067764|emb|CBJ38974.1| Protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           CMR15]
          Length = 216

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  ++ +         V+E+GAG G +  +L   G R V  ++   +    
Sbjct: 57  GQNMLP-PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RHVTTVDIAPELAAF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +D  +++    ++++Q DA +      +++   I +  ++P
Sbjct: 115 ARDNLARNGVTNVDVVQGDAGQGWGNSLYDV---ICVSGSVP 153


>gi|222147281|ref|YP_002548238.1| methyltransferase [Agrobacterium vitis S4]
 gi|221734271|gb|ACM35234.1| methyltransferase [Agrobacterium vitis S4]
          Length = 197

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E+G G G +T+ +L  G +  K++ +E    F   L +    
Sbjct: 40  TARRMASIITPESGLPVLELGPGTGVITKAILARGIKPEKLVSVEYSADFHRHLTETIPG 99

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISADTWPPF 146
               +  +  DA  L+        +S    I A    N P     RLL + +        
Sbjct: 100 ----VNFVHGDAFNLEKTLGPLSGLSFDCVISAMPLLNFPMQERIRLLEDLLDRMPHGRP 155

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           +  ++      +     A+         S           + +I P   +
Sbjct: 156 FMQISYGPMSPI----IAKGG-------SYFIQHFDFV--VRNIPPAQLW 192


>gi|228988090|ref|ZP_04148190.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771660|gb|EEM20126.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 192

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F+  LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFYKELKRKFKN 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFNIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|205374248|ref|ZP_03227047.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Bacillus
           coahuilensis m4-4]
          Length = 212

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 21/124 (16%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             IL K+A++S       V+E G G GNLT+ LL  G   V  +E   +   + K+    
Sbjct: 35  EEILAKVADASE----GHVLEFGCGTGNLTKKLLDRG-LTVTAVEPSPEMREVGKEKLGD 89

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
               +EII  D L                I  +P  I +   F+ ++       +     
Sbjct: 90  L---VEIIDGDFLDFS-------------IDFIPSTIVSTYAFHHLTDKEKHEAFHHYGK 133

Query: 153 LFQK 156
           L QK
Sbjct: 134 LLQK 137


>gi|301056336|ref|YP_003794547.1| ribosomal RNA adenine dimethylase [Bacillus anthracis CI]
 gi|300378505|gb|ADK07409.1| ribosomal RNA adenine dimethylase [Bacillus cereus biovar anthracis
           str. CI]
          Length = 192

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK    +
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKF-K 85

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +   + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 86  YEQNVIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLPEEVSKRILNNTMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|307822829|ref|ZP_07653060.1| Beta-ketoacyl synthase [Methylobacter tundripaludum SV96]
 gi|307736433|gb|EFO07279.1| Beta-ketoacyl synthase [Methylobacter tundripaludum SV96]
          Length = 3566

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 47   DGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISS-QHPNRLEIIQDD 103
             G  V++IG G   +   L L  GARKV  IE  D+ F   +  I      +++ II  D
Sbjct: 1290 PGKIVLDIGTGKEAILARLALEAGARKVYAIEMGDEAFAQAVAYIQHLGLDDKITIIHGD 1349

Query: 104  ALKVDFEKFFNIS 116
            A KV+  +  ++ 
Sbjct: 1350 ATKVEIPELADVC 1362


>gi|228917483|ref|ZP_04081032.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228842155|gb|EEM87254.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 200

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 35  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 94

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + +    A  +K   E+F        +      ++   +    ++           
Sbjct: 95  EQN-VIVAHGSAENIKKYMEEFHIECVDYVLSGLPFASLSEEVSKRILNNTMEAIHENGE 153

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 154 FITFQYSLVKKGFIQ 168


>gi|78066348|ref|YP_369117.1| ribosomal RNA adenine methylase transferase [Burkholderia sp. 383]
 gi|77967093|gb|ABB08473.1| ribosomal RNA adenine methylase transferase [Burkholderia sp. 383]
          Length = 238

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQH 93
           L  +  +    DG TVIE+GAG G  T+ LL  G    +++++E D  F   L+      
Sbjct: 30  LAALITADIPRDGATVIELGAGTGVFTRALLARGVASDRLVLVEADPAFANTLRHQFPA- 88

Query: 94  PNRLEIIQDDALKVDFE-KFFNISSPIRIIANLP 126
              L I+Q DA+ +     FF  +    +++ LP
Sbjct: 89  ---LRIMQMDAVHLGMTGDFFGGARADAVVSGLP 119


>gi|218899998|ref|YP_002448409.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           G9842]
 gi|218541081|gb|ACK93475.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           G9842]
          Length = 192

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ +   IE ++ FF  LK     
Sbjct: 27  LAKKMVDVIDFNRAKCIVELGPGTGAFTKEIMKRKKKETLFLLIEINEVFFKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + +I   A  +K   E+         +      ++   +    +++          
Sbjct: 87  EQN-VIVIHGSAENIKKYREQLNIECIDYILSGLPFTSLPEEVSKRILNSVMETIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|121608175|ref|YP_995982.1| type 12 methyltransferase [Verminephrobacter eiseniae EF01-2]
 gi|121552815|gb|ABM56964.1| Methyltransferase type 12 [Verminephrobacter eiseniae EF01-2]
          Length = 190

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
              +IE+G G G  TQ LL  G    +++++E D+ F  +L+         + ++  DA 
Sbjct: 42  DDPIIELGPGTGVFTQALLARGVPRERLVLVEADRAFAKLLEQRFPG----VRVLHMDAA 97

Query: 106 KVDFEK-FFNISSPIRIIANLP 126
            ++    FF       I++ +P
Sbjct: 98  HLEQTGVFFGRKKASTIVSGIP 119


>gi|320103676|ref|YP_004179267.1| ribosomal RNA adenine methylase transferase [Isosphaera pallida
           ATCC 43644]
 gi|319750958|gb|ADV62718.1| ribosomal RNA adenine methylase transferase [Isosphaera pallida
           ATCC 43644]
          Length = 194

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRL 97
                      ++E+GAG G +TQ +         VI IE+D  F   L+   +  P+ +
Sbjct: 33  VSGIDWDTVEGLVELGAGTGPITQAIAERARPDCLVIAIERDPDFCARLRRRFANQPH-I 91

Query: 98  EIIQDDA 104
            I++ D 
Sbjct: 92  RIVEGDV 98


>gi|251798518|ref|YP_003013249.1| methyltransferase type 11 [Paenibacillus sp. JDR-2]
 gi|247546144|gb|ACT03163.1| Methyltransferase type 11 [Paenibacillus sp. JDR-2]
          Length = 192

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 23/153 (15%)

Query: 19  IIPKKYMGQNFLLDLN-----------ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           +  KK     F+ +             +  ++  ++   +   ++EIG+G G +TQ++  
Sbjct: 8   LFFKK-----FIHNPKYVGSITPSSRYLANRMVAAAKWEEAENIVEIGSGTGAITQVIAK 62

Query: 68  L--GARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRII 122
                 KVI+ EKD++    L     Q     N L ++    LK       +        
Sbjct: 63  RVMLKSKVILFEKDEEMAQKLHQNFPQFTREGNALRLVAQ--LKKHNIHEVDYIFSGLPF 120

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            N P ++  +L+     A        +     Q
Sbjct: 121 YNFPTDMRLQLILQCKEALKPGGKLIAFQYSLQ 153


>gi|325983707|ref|YP_004296109.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosomonas sp. AL212]
 gi|325533226|gb|ADZ27947.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosomonas sp. AL212]
          Length = 217

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            GQ  L    +  +I +         ++E+G+G G +T +L   GA  V  +E   +   
Sbjct: 56  FGQVMLT-PKMEARILQELHIRKTDKILEVGSGSGYMTALLADKGAH-VYSVEIIPELKA 113

Query: 85  ILKDISSQHP-NRLEIIQDDALKVDFE 110
           + +     H    + + Q DA +   +
Sbjct: 114 MAEKNLKAHGIINVTLEQGDAARGWPQ 140


>gi|167924611|ref|ZP_02511702.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei BCC215]
          Length = 217

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  +I +         V+EIGAG G +  +L   G R V  +E D      
Sbjct: 57  GQKMLF-PRVEARILQELAVKKHENVLEIGAGCGYMAALLAARGQR-VTTVEIDPDLAKF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            ++   ++     E++  D  +    K       I +   LP
Sbjct: 115 AEENLKKNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154


>gi|167720829|ref|ZP_02404065.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei DM98]
 gi|237813467|ref|YP_002897918.1| protein-L-isoaspartate [Burkholderia pseudomallei MSHR346]
 gi|237504673|gb|ACQ96991.1| protein-L-isoaspartate [Burkholderia pseudomallei MSHR346]
          Length = 217

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  +I +         V+EIGAG G +  +L   G R V  +E D      
Sbjct: 57  GQKMLF-PRVEARILQELAVKKHENVLEIGAGCGYMAALLAARGQR-VTTVEIDPDLAKF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            ++   ++     E++  D  +    K       I +   LP
Sbjct: 115 AEENLKKNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154


>gi|114452122|gb|ABI75035.1| erythromycin resistance protein [uncultured bacterium]
          Length = 103

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D      L+ + S   N ++++  D       KF     P ++++++PY I + + F  +
Sbjct: 1   DTALVEHLRKLFSDARN-VQVVGCDFRNFAVPKF-----PFKVVSSIPYGITSDI-FKIL 53

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
             ++   F    +++ Q E  +++ ++     Y   +V         +++++ P
Sbjct: 54  MFESLENFL-GGSIVLQLEPTQKLFSR---KLYNPYTVFYHTFFDLKLVYEVGP 103


>gi|257058264|ref|YP_003136152.1| methyltransferase type 11 [Cyanothece sp. PCC 8802]
 gi|256588430|gb|ACU99316.1| Methyltransferase type 11 [Cyanothece sp. PCC 8802]
          Length = 274

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            I +KI   +    G  ++EIGAG G + Q L+     + +  +   +   I +      
Sbjct: 33  GIAQKIVAIADLKPGDLIVEIGAGTGMIGQWLIAS-PYQYLGFDLSSEMLDIFRQKLPVQ 91

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           P+   ++Q D            + P  +       I +    + ++ +
Sbjct: 92  PDNCRLLQAD-----------GNDPWPVANGTAKVIFSSRTIHLLNEE 128


>gi|196041483|ref|ZP_03108776.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           NVH0597-99]
 gi|196043778|ref|ZP_03111015.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           03BB108]
 gi|196025114|gb|EDX63784.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           03BB108]
 gi|196027731|gb|EDX66345.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           NVH0597-99]
          Length = 192

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLPEEVSKRILNNTMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|294942192|ref|XP_002783422.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
           [Perkinsus marinus ATCC 50983]
 gi|239895877|gb|EER15218.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
           [Perkinsus marinus ATCC 50983]
          Length = 226

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                   +E+G G G LT+       +KV   E  + F   L+D      +++EII   
Sbjct: 59  NLNPETVSVEVGPGTGLLTREFSKRPGKKVYATELSEGFIQHLRDDDRIEKDKVEIIHST 118

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
              +      + S  + ++ ++ +++      
Sbjct: 119 EDDLCLPTESDGSVDLAVLCDVYHHLTHPRTI 150


>gi|225866829|ref|YP_002752207.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           03BB102]
 gi|225786067|gb|ACO26284.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           03BB102]
          Length = 192

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKQETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFASLPEEVSKRILNNTMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|206976982|ref|ZP_03237883.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           H3081.97]
 gi|217962317|ref|YP_002340889.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           AH187]
 gi|222098300|ref|YP_002532357.1| ribosomal RNA adenine dimethylase; phospholipid n-methyltransferase
           [Bacillus cereus Q1]
 gi|229141567|ref|ZP_04270100.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST26]
 gi|206744787|gb|EDZ56193.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           H3081.97]
 gi|217063999|gb|ACJ78249.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           AH187]
 gi|221242358|gb|ACM15068.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Bacillus cereus Q1]
 gi|228641907|gb|EEK98205.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST26]
          Length = 192

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKN 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIEYVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|218245232|ref|YP_002370603.1| type 11 methyltransferase [Cyanothece sp. PCC 8801]
 gi|218165710|gb|ACK64447.1| Methyltransferase type 11 [Cyanothece sp. PCC 8801]
          Length = 274

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I +KI   +    G  ++EIGAG G + Q L+     + +  +   +   I +      P
Sbjct: 34  IAEKIVAIADLKPGDLIVEIGAGTGMIGQWLIAS-PYQYLGFDLSSEMLDIFRQKLPVQP 92

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +   ++Q D            + P  +       I +    + ++ +
Sbjct: 93  DNCRLLQAD-----------GNDPWPVANGTAKVIFSSRTIHLLNEE 128


>gi|115371941|ref|ZP_01459254.1| hypothetical protein STIAU_8389 [Stigmatella aurantiaca DW4/3-1]
 gi|115371176|gb|EAU70098.1| hypothetical protein STIAU_8389 [Stigmatella aurantiaca DW4/3-1]
          Length = 503

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V+EIGAG G +T+ L   G   +I +E D+ +   LK++    P+ +     D    
Sbjct: 297 GQRVLEIGAGIGTITREL-EAGRELLIALEVDRFYVDRLKNLFRGKPH-VRPYLSDVALA 354

Query: 108 DFEKFFNISSPIRIIANLPYNI 129
           D+E          +++N+  +I
Sbjct: 355 DWESLQAERLDTIVLSNVLEHI 376


>gi|206969613|ref|ZP_03230567.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           AH1134]
 gi|228955105|ref|ZP_04117120.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229072333|ref|ZP_04205537.1| RRNA adenine dimethylase [Bacillus cereus F65185]
 gi|229181148|ref|ZP_04308480.1| RRNA adenine dimethylase [Bacillus cereus 172560W]
 gi|206735301|gb|EDZ52469.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           AH1134]
 gi|228602339|gb|EEK59828.1| RRNA adenine dimethylase [Bacillus cereus 172560W]
 gi|228710758|gb|EEL62729.1| RRNA adenine dimethylase [Bacillus cereus F65185]
 gi|228804615|gb|EEM51219.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 192

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E          +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYIEDLNIECVDYVLSGLPFTSLPEEVSKRILNNVMEGIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|148263648|ref|YP_001230354.1| phospholipid N-methyltransferase-like protein [Geobacter
           uraniireducens Rf4]
 gi|146397148|gb|ABQ25781.1| Phospholipid N-methyltransferase-like protein [Geobacter
           uraniireducens Rf4]
          Length = 208

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPIL 86
           FL      ++I + +G     T++E+G G G  TQ +L       +++ IE +     + 
Sbjct: 37  FLK-----RRIVDIAGICSAKTIVELGPGSGGTTQAILRAAPSYARLLSIEVNPHLHSL- 90

Query: 87  KDISSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             + S   NRL     D   LK +    + + +P  II+ +P++  + +
Sbjct: 91  --VCSIEDNRLIAHLGDCHGLK-EILSMYRLGAPEVIISGIPFSTMSNI 136


>gi|116751287|ref|YP_847974.1| hypothetical protein Sfum_3870 [Syntrophobacter fumaroxidans MPOB]
 gi|116700351|gb|ABK19539.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
          Length = 187

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 15/130 (11%)

Query: 28  NFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIV 75
           NF+ D N+          +K++           +IE G G G  T+ LL     A ++I+
Sbjct: 9   NFVKDRNVASITPTSSFGVKRVCSKIDFERQNVIIEYGPGTGVFTRYLLKNMDDASRLIL 68

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGTRLL 134
           IE+++ F  ILK     H  R+ I+ D A  V D  +    S    I++ +P+ +    L
Sbjct: 69  IERNKNFGSILKKKI--HDPRVVIVNDSAENVLDTLRACRESQADYILSGIPFILLNDEL 126

Query: 135 FNWISADTWP 144
            N I  +T  
Sbjct: 127 KNLILYNTHR 136


>gi|224496143|gb|ACN52455.1| erythromycin resistance methylase [Streptococcus oralis]
 gi|224496145|gb|ACN52456.1| erythromycin resistance methylase [Streptococcus salivarius]
          Length = 121

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
           +LT  L  + +++V  IE D   F  L     +   R+ +I  D L+      F      
Sbjct: 1   HLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNTRVTLIHQDILQFQ----FPNKQRY 54

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
           +I+ N+PY++ T+++   +        +  +   F K   + 
Sbjct: 55  KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI 96


>gi|324328731|gb|ADY23991.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 192

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + +K+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LARKMVDVIDFHRAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKYKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMESIQENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|229193111|ref|ZP_04320066.1| RRNA adenine dimethylase [Bacillus cereus ATCC 10876]
 gi|228590375|gb|EEK48239.1| RRNA adenine dimethylase [Bacillus cereus ATCC 10876]
          Length = 192

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E          +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYIEDLNIECVDYVLSGLPFTSLPEEVSKRILNNVMEGIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|115525453|ref|YP_782364.1| putative phospholipid N-methyltransferase [Rhodopseudomonas
           palustris BisA53]
 gi|115519400|gb|ABJ07384.1| putative phospholipid N-methyltransferase [Rhodopseudomonas
           palustris BisA53]
          Length = 191

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNR 96
           + +   +  G  VIE+G G G  T+ LL  G R+  + ++E    F P+L+         
Sbjct: 34  MVQGINAQTG-PVIELGPGTGVFTRALLGRGVRQQDLTLVEYGSDFIPLLQQRFPGA--- 89

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIA-----NLPYNIGTRLLFNWISADTWPPFWESLT 151
             ++  DA  +  EK F  +    +++      +P      +L +          +  +T
Sbjct: 90  -RVLWMDAAWLHREKLFEGAPVGAVVSGLGLLTMPPEKVQAILRSAFFYLRPGGAFYQIT 148

Query: 152 LLFQKEVGERITAQKN 167
                 V + I  +  
Sbjct: 149 YGPHCPVADAILDRLG 164


>gi|229158449|ref|ZP_04286511.1| RRNA adenine dimethylase [Bacillus cereus ATCC 4342]
 gi|228625056|gb|EEK81821.1| RRNA adenine dimethylase [Bacillus cereus ATCC 4342]
          Length = 192

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKGKFKN 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|198282882|ref|YP_002219203.1| type 11 methyltransferase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667726|ref|YP_002425083.1| phosphatidylethanolamine N-methyltransferase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247403|gb|ACH82996.1| methyltransferase type 11 [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519939|gb|ACK80525.1| phosphatidylethanolamine N-methyltransferase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 200

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 18/163 (11%)

Query: 29  FLLDLNIL-----------KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIV 75
           FL D + +           +++A       G  V+E+G G G +T+ LL  G     +++
Sbjct: 18  FLRDPHAIGAVLPSSPFLARRMATMVPQGPG-LVVELGPGMGPVTKALLESGIPPEDLVL 76

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           +E+       L+    +    +E+I+ DA  +             + +    +I   ++ 
Sbjct: 77  VEQAPTMVRHLRQRYPE----IEVIEGDAAHIQHLVAHRGPVRAVVSSLPLRSIPKAVVE 132

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
                        ++ + F                  R++V+ 
Sbjct: 133 RIFQQLPGISRHGTVFIQFTYHFRTSCQGLPAEFRRSRVAVVW 175


>gi|218233466|ref|YP_002369638.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           B4264]
 gi|218161423|gb|ACK61415.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           B4264]
          Length = 192

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+           ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVGVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E+F        +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFHIECVDYVLSGLPFTSLPEEVSKRILNNVMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|167837570|ref|ZP_02464453.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           thailandensis MSMB43]
          Length = 217

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  +I +         V+EIGAG G +  +L   G R V  +E D      
Sbjct: 57  GQKMLF-PRVEARILQELAVKKHENVLEIGAGSGYMAALLAARGQR-VTTVEIDPDLAKF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            ++   ++     E++  D  +    K       I +   LP
Sbjct: 115 AEENLKKNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154


>gi|218661353|ref|ZP_03517283.1| phospholipid N-methyltransferase protein [Rhizobium etli IE4771]
          Length = 144

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E+G G G +T+ +L  G +   ++ IE    F   L      
Sbjct: 42  TARRMASVIDMHSGLPVLELGPGTGAITKAILGRGVKPDNLVAIEYSTDFHQHLLRT--- 98

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANL 125
           +P  +  I  DA  LK     F + +    I    
Sbjct: 99  YPG-VHFINGDAFDLKTTLGAFSDQTFDCVISCIP 132


>gi|319786046|ref|YP_004145521.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464558|gb|ADV26290.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 220

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPN 95
           ++ ++     G +V+EIG G G  T  L  L AR+V+ IE   +     ++   +     
Sbjct: 70  RMLQALELQGGDSVLEIGTGSGYTTACLAAL-AREVVSIEVVPELADAARERLERTGLGT 128

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            + ++  DA++    + F++      +  LP 
Sbjct: 129 NVRVLAADAMEYTPTRTFDVVCVTAAVDVLPT 160


>gi|188582386|ref|YP_001925831.1| phospholipid N-methyltransferase [Methylobacterium populi BJ001]
 gi|179345884|gb|ACB81296.1| phospholipid N-methyltransferase [Methylobacterium populi BJ001]
          Length = 218

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A  +      +VIE+G G G +T+ L+  G    +++++E +  F  +L+     
Sbjct: 52  LARTMAAYADPNVSGSVIELGPGTGPVTEALIRRGFDQDRLVLVEFNPDFCTLLRRRFPG 111

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSP 118
               + +I  DA ++       +  P
Sbjct: 112 ----VTVICGDAYRIRETLRDKLGGP 133


>gi|85057695|ref|YP_456611.1| dimethyladenosine transferase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789800|gb|ABC65532.1| dimethyladenosine transferase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 450

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
             S  G  ++E+GAG GN+T+ L+   G + VI +E D++   +L++        L +I+
Sbjct: 286 LDSKTGEKILELGAGSGNVTKYLVQKFGVKNVIALEFDKELCNVLRNKFPD----LTVIE 341

Query: 102 DDALKV 107
            DA   
Sbjct: 342 GDACDF 347


>gi|170034884|ref|XP_001845302.1| mitochondrial dimethyladenosine transferase 2 [Culex
           quinquefasciatus]
 gi|167876595|gb|EDS39978.1| mitochondrial dimethyladenosine transferase 2 [Culex
           quinquefasciatus]
          Length = 415

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 48/237 (20%)

Query: 6   KSHSLKTILSHYKIIPK----------KYMGQN----FLLDLNILKKIAE--SSGSLDGI 49
           K   ++ +        K          K   QN    +L      + +A+  ++   +  
Sbjct: 41  KPEKIREL--EENFSAKTLDRFPAYLLKRGSQNTERFYLASQEAARDVAKLVTADLAEDT 98

Query: 50  TVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA---- 104
            + E+  G G LT+ LL      ++++IE D  F   L+       +R+E+   D     
Sbjct: 99  LLAEVNPGSGLLTKELLKSKKVNRLLLIEYDDWFQEGLRQFEG---SRVELKSGDFNGQW 155

Query: 105 LKVDFEKFFNISSPIRIIANLPYN--IGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
            ++  +         +++  LP    +   + F   S  +   F+++L      + G   
Sbjct: 156 KQIYLDSLDRGGRLEKLLEGLPRKRWMDEGINFRLFSIVSTLRFFKTLLYSVVNKKGLYG 215

Query: 163 TAQ--------------------KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             +                         Y   SVL     +   +  I    F P P
Sbjct: 216 LGRCELVLVVPPLVYVHLTCTKDAGYKLYRSGSVLFQLFFEHQFLGKIKRRDFLPWP 272


>gi|291299303|ref|YP_003510581.1| methyltransferase small [Stackebrandtia nassauensis DSM 44728]
 gi|290568523|gb|ADD41488.1| methyltransferase small [Stackebrandtia nassauensis DSM 44728]
          Length = 378

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             ++   +G TV +IG G G L  +L   GAR V+  +   +      D  ++    +R+
Sbjct: 192 VAAAPLPEGATVFDIGTGTGVLAALLAKRGAR-VVATDIAPRAVECAADNMTRLGLDDRV 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           E+++ D         F       ++ N P+  GT 
Sbjct: 251 EVVEAD--------LFPPGRADVVLCNPPWLPGTP 277


>gi|116856080|gb|ABK30588.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856083|gb|ABK30590.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856086|gb|ABK30592.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856089|gb|ABK30594.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856092|gb|ABK30596.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856095|gb|ABK30598.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856098|gb|ABK30600.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856101|gb|ABK30602.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856104|gb|ABK30604.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856107|gb|ABK30606.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856110|gb|ABK30608.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856113|gb|ABK30610.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856116|gb|ABK30612.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856119|gb|ABK30614.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856122|gb|ABK30616.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856125|gb|ABK30618.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856128|gb|ABK30620.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856131|gb|ABK30622.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856134|gb|ABK30624.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856137|gb|ABK30626.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856140|gb|ABK30628.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856143|gb|ABK30630.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856146|gb|ABK30632.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856149|gb|ABK30634.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856152|gb|ABK30636.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856155|gb|ABK30638.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856158|gb|ABK30640.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856161|gb|ABK30642.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856164|gb|ABK30644.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856167|gb|ABK30646.1| dimethyladenosine transferase [Legionella pneumophila]
 gi|116856170|gb|ABK30648.1| dimethyladenosine transferase [Legionella pneumophila]
          Length = 35

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV 51
          +  P+K  GQNFL D  I+ +I  +   L    +
Sbjct: 2  RHSPRKRFGQNFLQDKYIINEILRAINPLADDNM 35


>gi|1107877|emb|CAA57983.1| rRNA methylase [Staphylococcus hominis]
          Length = 74

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           Q F+   + + KI  +    +   + EIG+G G+ T  L+      V  IE D +    
Sbjct: 9  SQKFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGDFTLELVQRC-NFVTAIEIDHKLCKT 67

Query: 86 LKDIS 90
           +   
Sbjct: 68 TEKKL 72


>gi|316935041|ref|YP_004110023.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris DX-1]
 gi|315602755|gb|ADU45290.1| ribosomal RNA adenine methylase transferase [Rhodopseudomonas
           palustris DX-1]
          Length = 191

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
            VIE+G G G  T+ LL  G R+  + ++E   +F P+L+           ++  DA  +
Sbjct: 44  PVIELGPGTGVFTRALLKRGVRQQDLTLVEYGSEFIPLLQQRFPGA----RVLWMDAAWL 99

Query: 108 DFEKFFNISSPIRIIA-----NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
             EK F  +    +++      +P      +L            +  +T      V + I
Sbjct: 100 HREKLFEGAPVGAVVSGLGLLTMPQEKVAAILRGAFFYLRPGGAFYQITYGPHCPVPDAI 159

Query: 163 TAQKN 167
             +  
Sbjct: 160 LDRLG 164


>gi|134099971|ref|YP_001105632.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291003037|ref|ZP_06561010.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133912594|emb|CAM02707.1| ribosomal RNA adenine dimethylase domain protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 185

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL---GARKVIVIEKDQQFFPILKD 88
              + +++A    +     V+E+G G G L+  +      G R +  IE D      L+ 
Sbjct: 14  SPGLARQMASVVPTSGNPVVVELGPGTGALSGAVAKRLPTGGRHL-AIELDSGMVEYLRT 72

Query: 89  ISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNI 129
                   LE++Q DA  + +      I S   +++ LP++I
Sbjct: 73  EVPW----LEVVQGDAAHLGELLAGAGIESVDAVVSGLPWSI 110


>gi|114705400|ref|ZP_01438308.1| putative phospholipid N-methyltransferase [Fulvimarina pelagi
           HTCC2506]
 gi|114540185|gb|EAU43305.1| putative phospholipid N-methyltransferase [Fulvimarina pelagi
           HTCC2506]
          Length = 210

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             +  + + E S       ++E+G G G +T+ +L  G    ++  IE +Q F   LK  
Sbjct: 42  SRDYCRTMVEHSSVDLDGPILELGPGLGAVTRAMLERGIDPGRITSIEFEQNFASALKKR 101

Query: 90  SSQHPNRLEIIQDDALKVD 108
             +    + +IQ DA  +D
Sbjct: 102 FPE----INVIQGDAFDLD 116


>gi|326317245|ref|YP_004234917.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323374081|gb|ADX46350.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 236

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 14/158 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQ  L    +  ++ +         V+EIGAG G +   LL   A  V+ +E      
Sbjct: 75  RLGQCMLA-PRVEARMLQDLQVKPTDRVLEIGAGSGYM-AALLAHRAEHVVTLEIVPDLV 132

Query: 84  PILKD-ISSQHPNRLEIIQDD-ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              ++ + S   + + + Q D A     +  F++      +  +P +     L   +   
Sbjct: 133 EFARENLLSAGIDNVTVRQGDGARDAIPDGPFDVIVLSGSVHEVPQH-----LLALLREG 187

Query: 142 TWPPFWES----LTLLFQKEVGERITA-QKNSPHYGRL 174
                       +   F +  G+R  A Q    +  RL
Sbjct: 188 GRLAAITGDEPVMRATFVRRTGDRFAATQPWDTNASRL 225


>gi|229082079|ref|ZP_04214562.1| RRNA adenine dimethylase [Bacillus cereus Rock4-2]
 gi|228701226|gb|EEL53729.1| RRNA adenine dimethylase [Bacillus cereus Rock4-2]
          Length = 192

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++  +++IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETILLLIEINEVFCKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K   E          +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYIEDLNIECVDYVLSGLPFTSLPEEVSKRILNNVMEGIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|163797598|ref|ZP_02191547.1| Methyltransferase type 12 [alpha proteobacterium BAL199]
 gi|159177073|gb|EDP61635.1| Methyltransferase type 12 [alpha proteobacterium BAL199]
          Length = 181

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           +   I           VIE+G G G  T+ LL  G    +++++E+  +F  +L+     
Sbjct: 13  LAALITSEINPQTT-PVIELGPGTGVFTRALLARGVPPERLLLVERGAEFATMLEQRFPG 71

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY-NIGTRLLFNWISA 140
               + ++  DA  +   + F+      +I+ LP+ ++ TR +   +  
Sbjct: 72  ----VGVLAMDASDLGRVELFDGEPAKAVISGLPFLSMPTRQIMGVLDG 116


>gi|229815440|ref|ZP_04445772.1| hypothetical protein COLINT_02488 [Collinsella intestinalis DSM
           13280]
 gi|229808973|gb|EEP44743.1| hypothetical protein COLINT_02488 [Collinsella intestinalis DSM
           13280]
          Length = 190

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDD 103
           +G  V++  AG G L   +L+ GA   +  + D+    ++K   ++    P R ++I  D
Sbjct: 46  EGSRVLDAFAGSGALGLEVLSRGAEHAVFFDLDRSAAALVKRNLAKLSCAPARFQVICGD 105

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA-DTWPPFWESLTLLFQK 156
            +               ++ + PY +G++   + + A        +   ++F++
Sbjct: 106 VIASARRGRVPGGPFDAVLIDPPYALGSQPAIDLVEALRGHGLLADGAVVMFER 159


>gi|157132946|ref|XP_001662715.1| RrnaAD, ribosomal RNA adenine dimethylase, putative [Aedes aegypti]
 gi|108871020|gb|EAT35245.1| RrnaAD, ribosomal RNA adenine dimethylase, putative [Aedes aegypti]
          Length = 506

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 74/244 (30%), Gaps = 49/244 (20%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G      ++E+  G G LT+ LL      +++ E ++ F   L ++      ++ +   D
Sbjct: 110 GLEPDRLLVEVNPGMGLLTKELLK-KTDNLMLYETEEGFESELNNLLVPENRKVPLRFVD 168

Query: 104 ALKVDFEKFFN----ISSPIRIIANLPYNIGTR---LLFNWISADTWPPFWESLTLLF-- 154
                   + +         +++  LP     +   + F   S      F++SL      
Sbjct: 169 FNNYWRHSYVDTLDQGGRVEKLLEGLPRGTRWKDEEVNFRLFSVIGSLQFFKSLINSVAN 228

Query: 155 QKEVG-----ERITAQK-------------NSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
           QK +      E + A                   Y   SVL     +   +  I    F 
Sbjct: 229 QKGLFGLGRCEMVLAVPPLFFVHLTCRKDAGYKLYRSSSVLFQIFFEHEFIAKIPRKDFL 288

Query: 197 PSPKVTST--------------------VIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
           P P + S                     ++  +P  +    CL    ++    F  +   
Sbjct: 289 PWPSIHSAKGRNQTQYRRLGLVGTDELYLMRVVPRRDLFDYCLPDNLRLL-AFFVAQNMV 347

Query: 237 LRQS 240
            R++
Sbjct: 348 SRKN 351


>gi|262831180|sp|Q7MNQ4|TRMN6_VIBVY RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
          Length = 239

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +       +++IG G G L+ M     A   +  ++ D       ++  S  P  +RL +
Sbjct: 38  ADFHHSQNLLDIGTGTGLLSLMCAQRYAHLSITAVDIDAHAMEAAQENFSHSPWHSRLHL 97

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
              D LK++F   F+      II N PY   
Sbjct: 98  QHGDVLKLNFTHRFDG-----IICNPPYFNS 123


>gi|194290446|ref|YP_002006353.1| protein-l-isoaspartate o-methyltransferase [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224281|emb|CAQ70290.1| Protein-L-isoaspartate O-methyltransferase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 208

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  +I +        TV+EIGAG G +   LL   AR V+ ++      P 
Sbjct: 48  GQNMLA-PRVEARILQDLAVRKHETVLEIGAGSGYM-AALLAHRARHVLTVDI----VPE 101

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L +++  +     +   D  + +    +  ++P  +I 
Sbjct: 102 LVELARTNLANAGVTNVDVAEGNAADGWAAAAPYDVIC 139


>gi|37678845|ref|NP_933454.1| O-methyltransferase [Vibrio vulnificus YJ016]
 gi|37197586|dbj|BAC93425.1| predicted O-methyltransferase [Vibrio vulnificus YJ016]
          Length = 253

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +       +++IG G G L+ M     A   +  ++ D       ++  S  P  +RL +
Sbjct: 52  ADFHHSQNLLDIGTGTGLLSLMCAQRYAHLSITAVDIDAHAMEAAQENFSHSPWHSRLHL 111

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
              D LK++F   F+      II N PY   
Sbjct: 112 QHGDVLKLNFTHRFDG-----IICNPPYFNS 137


>gi|27379915|ref|NP_771444.1| phospholipid N-methyltransferase [Bradyrhizobium japonicum USDA
           110]
 gi|27353068|dbj|BAC50069.1| blr4804 [Bradyrhizobium japonicum USDA 110]
          Length = 222

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 15/136 (11%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILK 87
           L DL I ++I  S+G      ++E+G G G  T  LL  G R+  + +IE    F  +L+
Sbjct: 31  LADL-ITREITASTGP-----ILELGPGTGAFTYNLLKRGVRQQDLTLIEYGSDFMKLLQ 84

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISADTWPPF 146
                      ++  DA ++  E+ ++ +    +++ LP  N+ TR + + +S      +
Sbjct: 85  VRFPNA----RVLWMDAGRLTTERLYDGAPVGAVVSGLPLLNMSTRKVISIVSGAF--SY 138

Query: 147 WESLTLLFQKEVGERI 162
                  +Q   G   
Sbjct: 139 VRPGGAFYQFTYGMSC 154


>gi|152002559|dbj|BAF73583.1| dimethyladenosine transferase [Onion yellows phytoplasma OY-W]
          Length = 455

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G   G  ++E+GAG GN+T+ L+   G + VI +E D++   +L++        L +I+ 
Sbjct: 294 GLKTGEKILELGAGSGNVTKYLVQKFGTQNVIALEYDKELCNVLRNKFPG----LTVIEG 349

Query: 103 DALKV 107
           DA   
Sbjct: 350 DACNF 354


>gi|53726294|ref|YP_103739.1| protein-L-isoaspartate O-methyltransferase [Burkholderia mallei
           ATCC 23344]
 gi|121599364|ref|YP_992082.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei SAVP1]
 gi|124384056|ref|YP_001028527.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei NCTC 10229]
 gi|126448237|ref|YP_001081575.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei NCTC 10247]
 gi|166998381|ref|ZP_02264241.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei PRL-20]
 gi|238561067|ref|ZP_00442743.2| protein-L-isoaspartate [Burkholderia mallei GB8 horse 4]
 gi|254175400|ref|ZP_04882060.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei ATCC 10399]
 gi|254202441|ref|ZP_04908804.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei FMH]
 gi|254207773|ref|ZP_04914123.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei JHU]
 gi|254356326|ref|ZP_04972602.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei 2002721280]
 gi|52429717|gb|AAU50310.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           mallei ATCC 23344]
 gi|121228174|gb|ABM50692.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei SAVP1]
 gi|124292076|gb|ABN01345.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei NCTC 10229]
 gi|126241107|gb|ABO04200.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei NCTC 10247]
 gi|147746688|gb|EDK53765.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei FMH]
 gi|147751667|gb|EDK58734.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei JHU]
 gi|148025323|gb|EDK83477.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei 2002721280]
 gi|160696444|gb|EDP86414.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei ATCC 10399]
 gi|238525481|gb|EEP88909.1| protein-L-isoaspartate [Burkholderia mallei GB8 horse 4]
 gi|243065444|gb|EES47630.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei PRL-20]
          Length = 217

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  +I +         V+EIGAG G +  +L   G R V  +E D      
Sbjct: 57  GQKMLF-PRVEARILQELAVKKHENVLEIGAGGGYMAALLAARGQR-VTTVEIDPDLAKF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            ++   ++     E++  D  +    K       I +   LP
Sbjct: 115 AEENLKKNGMTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154


>gi|311069210|ref|YP_003974133.1| putative AdoMet-dependent methyltransferase [Bacillus atrophaeus
           1942]
 gi|310869727|gb|ADP33202.1| putative AdoMet-dependent methyltransferase [Bacillus atrophaeus
           1942]
          Length = 213

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             IL  I        G  V+E G G GNLT  LL  G + V  +E       +  D  S 
Sbjct: 35  EQILNGIVT----RSGSHVLEFGPGTGNLTAKLLEAG-KTVFGVEPSPAMRKLAADKLSG 89

Query: 93  HPNRLEIIQDDALKVDFEKFF 113
                 I+  D L      F 
Sbjct: 90  QSL---IVDGDFLDFPEPPFA 107


>gi|167895518|ref|ZP_02482920.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 7894]
          Length = 217

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  +I +         V+EIGAG G +  +L   G R V  +E D      
Sbjct: 57  GQKMLF-PRVEARILQELAVKKHENVLEIGAGGGYMAALLAARGQR-VTTVEIDPDLAKF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            ++   ++     E++  D  +    K       I +   LP
Sbjct: 115 AEENLKKNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154


>gi|255606120|ref|XP_002538506.1| Protein arginine N-methyltransferase, putative [Ricinus communis]
 gi|223511809|gb|EEF23877.1| Protein arginine N-methyltransferase, putative [Ricinus communis]
          Length = 313

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 24  YMGQ--------NFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           Y+GQ        N L+D N +     +       G  V+E+G G G L+       A +V
Sbjct: 18  YLGQFIPLHYHHNMLMDQNRMHNFKSAIAYAVKPGARVLELGGGTGVLSWF-AAAQASRV 76

Query: 74  IVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNI 115
             +E +       +   S   H  ++E+I  DA +    +  ++
Sbjct: 77  YCVEFNPDMVREARKFLSVNPHGEKVEVIHADAFEYLPPEPVDV 120


>gi|53720258|ref|YP_109244.1| protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei K96243]
 gi|76810885|ref|YP_334496.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia pseudomallei 1710b]
 gi|126440783|ref|YP_001060075.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 668]
 gi|126451653|ref|YP_001067337.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|134280110|ref|ZP_01766821.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 305]
 gi|167739812|ref|ZP_02412586.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 14]
 gi|167817035|ref|ZP_02448715.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 91]
 gi|167825446|ref|ZP_02456917.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 9]
 gi|167846936|ref|ZP_02472444.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei B7210]
 gi|167903905|ref|ZP_02491110.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912164|ref|ZP_02499255.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 112]
 gi|217420757|ref|ZP_03452262.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 576]
 gi|226193841|ref|ZP_03789443.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|242315823|ref|ZP_04814839.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254180955|ref|ZP_04887553.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1655]
 gi|254191798|ref|ZP_04898301.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195990|ref|ZP_04902415.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei S13]
 gi|254261099|ref|ZP_04952153.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1710a]
 gi|254298932|ref|ZP_04966382.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 406e]
 gi|52210672|emb|CAH36656.1| probable protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei K96243]
 gi|76580338|gb|ABA49813.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia pseudomallei 1710b]
 gi|126220276|gb|ABN83782.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 668]
 gi|126225295|gb|ABN88835.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|134248117|gb|EBA48200.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 305]
 gi|157808813|gb|EDO85983.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 406e]
 gi|157939469|gb|EDO95139.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169652734|gb|EDS85427.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei S13]
 gi|184211494|gb|EDU08537.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1655]
 gi|217396169|gb|EEC36186.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 576]
 gi|225934146|gb|EEH30131.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|242139062|gb|EES25464.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254219788|gb|EET09172.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1710a]
          Length = 217

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  +I +         V+EIGAG G +  +L   G R V  +E D      
Sbjct: 57  GQKMLF-PRVEARILQELAVKKHENVLEIGAGGGYMAALLAARGQR-VTTVEIDPDLAKF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            ++   ++     E++  D  +    K       I +   LP
Sbjct: 115 AEENLKKNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154


>gi|227824175|ref|YP_002828148.1| putative RNA adenine methylase transferase [Sinorhizobium fredii
           NGR234]
 gi|227343177|gb|ACP27395.1| putative RNA adenine methylase transferase [Sinorhizobium fredii
           NGR234]
          Length = 200

 Score = 50.2 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 12/127 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
             +++A       G+ V+E+G G G +T+ +L  G    +++ +E   +FF  LK   + 
Sbjct: 42  TARRMASVVNPRSGLPVLELGPGTGVITKAILERGISPDRLVSVEYSTEFFNQLKADFAG 101

Query: 93  HPNRLEIIQDDA------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
               +  I  DA      L     + F+       + N P +    L+ + +S   +   
Sbjct: 102 ----VNFINGDAFDLARTLGALNGQQFDSVISAVPLLNFPMHRRVELIEDLLSRIPFGRP 157

Query: 147 WESLTLL 153
              ++  
Sbjct: 158 VVQISYG 164


>gi|163852379|ref|YP_001640422.1| phospholipid N-methyltransferase [Methylobacterium extorquens PA1]
 gi|163663984|gb|ABY31351.1| phospholipid N-methyltransferase [Methylobacterium extorquens PA1]
          Length = 218

 Score = 50.2 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A  +       VIE+G G G +T+ L+  G    +++++E +  F  +L+     
Sbjct: 52  LARTMAAYADPNVSGPVIELGPGTGPVTEALIRRGFDQDRLVLVEFNPDFCTLLRRRFPG 111

Query: 93  HPNRLEIIQDDALKV 107
               + +I  DA ++
Sbjct: 112 ----VTVICGDAYRI 122


>gi|167763063|ref|ZP_02435190.1| hypothetical protein BACSTE_01429 [Bacteroides stercoris ATCC
           43183]
 gi|167699403|gb|EDS15982.1| hypothetical protein BACSTE_01429 [Bacteroides stercoris ATCC
           43183]
          Length = 236

 Score = 50.2 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHP--NRLEI 99
           +   D   ++++GAG G ++  L       VI  +E D       ++     P  NR+E+
Sbjct: 33  APVQDVKRILDVGAGSGLISLQLAQRNPEAVITSVEIDPAAAAQAQENIQSSPWSNRMEV 92

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +  D  K   E  F++     I++N PY +
Sbjct: 93  VCCDFRKYHPEDKFDL-----IVSNPPYFV 117


>gi|224496147|gb|ACN52457.1| erythromycin resistance methylase [Streptococcus pneumoniae]
 gi|224496149|gb|ACN52458.1| erythromycin resistance methylase [Streptococcus sanguinis]
 gi|224496151|gb|ACN52459.1| erythromycin resistance methylase [Streptococcus mitis]
          Length = 121

 Score = 50.2 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
           +LT  L  + +++V  IE D   F  L     +   R+ +I  D L+      F      
Sbjct: 1   HLTTKLAKI-SKQVTSIELDSHLFN-LSSEKLKLNIRVTLIHQDILQFQ----FPNKQRY 54

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
           +I+ N+PY++ T+++   +        +  +   F K   + 
Sbjct: 55  KIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI 96


>gi|229032489|ref|ZP_04188457.1| RRNA adenine dimethylase [Bacillus cereus AH1271]
 gi|228728858|gb|EEL79866.1| RRNA adenine dimethylase [Bacillus cereus AH1271]
          Length = 192

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 10/138 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ F   LK     
Sbjct: 27  LAKKMVDVIDFNRAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELKRNFKN 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISA-DTWPP 145
             N + ++   A  +K   E+F        +      +LP  +  R+L N I A      
Sbjct: 87  EQN-VIVVHGSAENIKKYMEEFNIECVDYVLSGLPFASLPEEVSKRILNNVIEAIHENGE 145

Query: 146 FWESLTLLFQKEVGERIT 163
           F      L +K   +   
Sbjct: 146 FITFQYSLVKKGFIQHFF 163


>gi|325291734|ref|YP_004277598.1| phosphatidylethanolamine
           N-methyltransferase/phosphatidyl-N-methylethanolamine
           N-methyltransferase protein [Agrobacterium sp. H13-3]
 gi|325059587|gb|ADY63278.1| phosphatidylethanolamine
           N-methyltransferase/phosphatidyl-N-methylethanolamine
           N-methyltransferase protein [Agrobacterium sp. H13-3]
          Length = 197

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             +K+A        + V+E+G G G +T+ +L  G +  ++  IE    F+     +   
Sbjct: 40  TARKMASVIDPHSDLPVLELGPGTGVITKAILARGIKPERLTAIEYSTDFY---NQLLRS 96

Query: 93  HPNRLEIIQDDALKVD------FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           +P  +  I  DA  ++        + F+       + N P     +LL   +        
Sbjct: 97  YPG-VNFINGDAFDLNATLGEHQGQMFDSVISAVPMLNFPMAARIKLLDELLKRVPHGRP 155

Query: 147 WESLTLL 153
              ++  
Sbjct: 156 VIQISYG 162


>gi|218531138|ref|YP_002421954.1| phospholipid N-methyltransferase [Methylobacterium chloromethanicum
           CM4]
 gi|240139714|ref|YP_002964191.1| Phospholipid N-methyltransferase [Methylobacterium extorquens AM1]
 gi|254562126|ref|YP_003069221.1| phospholipid N-methyltransferase [Methylobacterium extorquens DM4]
 gi|218523441|gb|ACK84026.1| phospholipid N-methyltransferase [Methylobacterium chloromethanicum
           CM4]
 gi|240009688|gb|ACS40914.1| Phospholipid N-methyltransferase [Methylobacterium extorquens AM1]
 gi|254269404|emb|CAX25370.1| Phospholipid N-methyltransferase [Methylobacterium extorquens DM4]
          Length = 218

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A  +       VIE+G G G +T+ L+  G    +++++E +  F  +L+     
Sbjct: 52  LARTMAAYADPNVSGPVIELGPGTGPVTEALIRRGFDQDRLVLVEFNPDFCTLLRRRFPG 111

Query: 93  HPNRLEIIQDDALKV 107
               + +I  DA ++
Sbjct: 112 ----VTVICGDAYRI 122


>gi|310824202|ref|YP_003956560.1| ribosomal RNA adenine methylase transferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397274|gb|ADO74733.1| Ribosomal RNA adenine methylase transferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 417

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V+EIGAG G +T+ L   G   +I +E D+ +   LK++    P+ +     D    
Sbjct: 211 GQRVLEIGAGIGTITREL-EAGRELLIALEVDRFYVDRLKNLFRGKPH-VRPYLSDVALA 268

Query: 108 DFEKFFNISSPIRIIANLPYNI 129
           D+E          +++N+  +I
Sbjct: 269 DWESLQAERLDTIVLSNVLEHI 290


>gi|325003068|ref|ZP_08124180.1| phospholipid N-methyltransferase [Pseudonocardia sp. P1]
          Length = 210

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDI 89
              + +K+A  +       V+E+G G G +T  +    A   + + +E D      L   
Sbjct: 40  SQRLSEKLARIAPGHGAPVVVELGPGTGAVTSEVSRRLAPGGRHLAVELDPGMARYL--- 96

Query: 90  SSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNI 129
           + +HP  +E+I  DA K+ +  +   I+    +I+ LP+++
Sbjct: 97  TGRHPG-VEVINGDARKLGELLEERGIAGVDAVISGLPWSL 136


>gi|114707231|ref|ZP_01440129.1| protein-L-isoaspartate O-methyltransferase [Fulvimarina pelagi
           HTCC2506]
 gi|114537427|gb|EAU40553.1| protein-L-isoaspartate O-methyltransferase [Fulvimarina pelagi
           HTCC2506]
          Length = 214

 Score = 49.8 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 6/125 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D     ++ ++        V+EIG G G +T ++  L A  V  +E+ ++     +    
Sbjct: 62  DAATAIRLVDALDLSPEHRVLEIGTGSGFVTALIAKL-ALHVTSLERFRRLVAGAEAALQ 120

Query: 92  QHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +     + ++  D L    E +   +   RII +  Y    R+  + ++  +        
Sbjct: 121 RCKITNITLVHADGL----EGYGEGAPYDRIIVHSAYPSAPRIFLDQMNQQSCLICAIGA 176

Query: 151 TLLFQ 155
               Q
Sbjct: 177 GGDAQ 181


>gi|44920593|gb|AAS49126.1| putative methyltransferase [Aneurinibacillus thermoaerophilus]
          Length = 302

 Score = 49.8 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                 TV+EIGAG G LT  LL   A +V+ +E  ++   I+ +   QH N LEI+  +
Sbjct: 66  DFGKESTVLEIGAGCGALT-GLLCEKAGQVVAVELSKRRAEIIGNRHKQH-NNLEIVIGN 123

Query: 104 ALKVDFEKFFN 114
              + F++ F+
Sbjct: 124 LNDIVFKEQFD 134


>gi|15894657|ref|NP_348006.1| precorrin-6B methylase CbiT [Clostridium acetobutylicum ATCC 824]
 gi|15024314|gb|AAK79346.1|AE007649_11 Precorrin-6B methylase CbiT [Clostridium acetobutylicum ATCC 824]
 gi|325508793|gb|ADZ20429.1| Precorrin-6B methylase CbiT [Clostridium acetobutylicum EA 2018]
          Length = 187

 Score = 49.8 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 38  KI--AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH- 93
           +I         +  T+++IGAG G+++  +     + KVI IE++++   +L+    +  
Sbjct: 22  RILSIAKLEIEEDDTLLDIGAGTGSISIQMSKCTPKGKVIAIEREEKALKVLEKNKEKFK 81

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT---------RLLFNWISADTWP 144
            + L II+ DA +++ ++ F+         N+   I +         +++ N+I+ D   
Sbjct: 82  AHNLYIIKGDASQLNLDESFDGVFIGGSSGNIDKIIKSYALKLKKGGKMVMNFITLDNLY 141

Query: 145 PFWESLTLL-FQKEVGERITAQKNSPHYGRLS 175
              E+L  L F+ E  +   ++  +  Y  LS
Sbjct: 142 RAIETLKELNFEVECSQIAVSKMRAKSYMMLS 173


>gi|94497116|ref|ZP_01303689.1| putative methyltransferase [Sphingomonas sp. SKA58]
 gi|94423488|gb|EAT08516.1| putative methyltransferase [Sphingomonas sp. SKA58]
          Length = 234

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPN 95
           ++I E    + G  VI++G+G G L + L+T      +I +E D     + +       +
Sbjct: 47  QRIVEELHLVPGDRVIDVGSGTGTLLKALMTDCPEAGLIGVEPDPDALALARRKFGAGAD 106

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            ++      L+    K      P +I+++L
Sbjct: 107 LVKWHNG-FLE--SLKLPAGWQPNKIVSSL 133


>gi|85373745|ref|YP_457807.1| putative methyltransferase [Erythrobacter litoralis HTCC2594]
 gi|84786828|gb|ABC63010.1| putative methyltransferase [Erythrobacter litoralis HTCC2594]
          Length = 228

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPN 95
           + I E +  + G  VI++G G G L + L+        I +E D     I +       +
Sbjct: 41  RAIVEEAVLVPGDKVIDVGCGTGTLLRALMASCPEAGFIGVEPDPAALAIAQRKFGAGVD 100

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            +       L  D  +  +   P +I+++L
Sbjct: 101 MVRWHNG-FL--DSLELSDGWQPDKIVSSL 127


>gi|146297478|ref|YP_001181249.1| methyltransferase type 11 [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145411054|gb|ABP68058.1| Methyltransferase type 11 [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 201

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKD 88
            D   + +I E      G  V+++G G G L + +L    ++   +  D  ++     ++
Sbjct: 20  HDPQKVNEIIEKIQLKKGDKVLDVGCGTGVLIEYILKFVGQQGSYLGVDISKKMIERAEE 79

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFN 114
                 N ++ +  D + + F+++F+
Sbjct: 80  KYKDIEN-VDFVCCDVVDLSFKEYFD 104


>gi|312797064|ref|YP_004029986.1| protein-L-isoaspartate O-methyltransferase [Burkholderia
           rhizoxinica HKI 454]
 gi|312168839|emb|CBW75842.1| Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)
           [Burkholderia rhizoxinica HKI 454]
          Length = 217

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ LL   I  +I +         V+EIGAG G +   LL   AR V+ ++      P 
Sbjct: 57  GQHMLL-PKIEARILQELAVKKHEVVLEIGAGSGYM-AALLAHRARSVLTLDI----VPE 110

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           L +++  +    ++        D  + +    P  +I  
Sbjct: 111 LAELARDNLAANDVTNAQVETGDGSRGWPAQGPYDVICV 149


>gi|312137195|ref|YP_004004532.1| methyltransferase type 11 [Methanothermus fervidus DSM 2088]
 gi|311224914|gb|ADP77770.1| Methyltransferase type 11 [Methanothermus fervidus DSM 2088]
          Length = 274

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           N+LK+I          +V+++G GPG L   +     + V  ++  ++   +LK  + + 
Sbjct: 58  NVLKRI----KLDPEWSVLDVGCGPGTLAIPIAKE-VKHVTAVDISKEMLKLLKKNAEKE 112

Query: 94  P-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             + + I+  D   +D EK         +IA+    +   L +     D+    +  +T 
Sbjct: 113 GISNINIVNADFKDIDIEKI---KPHDVVIASRFCGLTGDLKYELKKLDSLAKKYVYITS 169

Query: 153 LFQ 155
           L Q
Sbjct: 170 LAQ 172


>gi|163759467|ref|ZP_02166552.1| putative methyltransferase (pcm-like) transmembrane protein
           [Hoeflea phototrophica DFL-43]
 gi|162283064|gb|EDQ33350.1| putative methyltransferase (pcm-like) transmembrane protein
           [Hoeflea phototrophica DFL-43]
          Length = 224

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL++ + L K+ + +       V+EIG   G  T  LL+L A  V+ +E D        +
Sbjct: 67  FLMEPSPLAKLLQLAEIKPDHVVLEIGCAEGYAT-ALLSLIAGSVVALESDGALAEAASE 125

Query: 89  ISSQHP-NRLEIIQDD 103
             S+   + + ++  D
Sbjct: 126 RLSEAGFDNVAVVTGD 141


>gi|307609495|emb|CBW98992.1| hypothetical protein LPW_07771 [Legionella pneumophila 130b]
          Length = 208

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           I ++       TV+E+G G G +T  LL+   +KVI I+    F    K    ++  N +
Sbjct: 60  IIQALDLKGHETVLEVGTGTGFMT-ALLSKLCKKVISIDYYSDFTANAKRKLEENNCNNV 118

Query: 98  EIIQDDALKVDFE 110
           E+I  DA +   E
Sbjct: 119 ELITGDACRGWLE 131


>gi|299822608|ref|ZP_07054494.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Listeria
           grayi DSM 20601]
 gi|299816137|gb|EFI83375.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Listeria
           grayi DSM 20601]
          Length = 224

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 16/117 (13%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+        G  +IE G+G GNLT  LL    ++V+ +E       + K  SS+ P   
Sbjct: 48  KMLGKIAVQSGEKIIEFGSGTGNLTLQLLHQK-KRVMAVEP---SAAMRKKASSKLPKGF 103

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
                D L+     F             P  I +  +F+ ++A+      E    L 
Sbjct: 104 TQYDGDLLEFPEPPF------------TPDTIVSSFVFHHLNAEEKRAAIEKYYALL 148


>gi|182677528|ref|YP_001831674.1| methyltransferase type 12 [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182633411|gb|ACB94185.1| Methyltransferase type 12 [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 325

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQ----QFFPILKD 88
           + + + E++      T+ EIG G G+L+  L        KVI ++  +    +     ++
Sbjct: 54  LTQALIEAAHLSGDETIYEIGCGCGDLSLALAAKLRAQGKVIALDISKPMLARAVERTQE 113

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNI 115
             +    +L+ I  DA+   FE   ++
Sbjct: 114 AGATEAQKLQFIAADAMTYRFEPLADL 140


>gi|16082542|ref|NP_394102.1| SAM-dependent methyltransferase [Thermoplasma acidophilum DSM
          1728]
          Length = 185

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +I +      G  ++++G GPG  T  L +    KV  ++   +   ILK+    H N
Sbjct: 23 DRIVDQLPISPGFDIVDLGCGPGFFTLPLASRTDGKVYAVDASDEMIEILKERIDGHSN 81


>gi|254000328|ref|YP_003052391.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylovorus sp. SIP3-4]
 gi|253987007|gb|ACT51864.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylovorus sp. SIP3-4]
          Length = 220

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           +I ++        V+EIG G G LT  LL   A++VI +E +       +    QH
Sbjct: 71  RIVQALEVSKTDRVLEIGTGSGYLT-ALLATLAKEVISLEVEADLSVAAQRKLQQH 125


>gi|54293684|ref|YP_126099.1| hypothetical protein lpl0737 [Legionella pneumophila str. Lens]
 gi|53753516|emb|CAH14971.1| hypothetical protein lpl0737 [Legionella pneumophila str. Lens]
          Length = 216

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           I ++       TV+E+G G G +T  LL+   +KVI I+    F    K    ++  N +
Sbjct: 68  IIQALDLKGHETVLEVGTGTGFMT-ALLSKLCKKVISIDYYSDFTANAKRKLEENNCNNV 126

Query: 98  EIIQDDALKVDFE 110
           E+I  DA +   E
Sbjct: 127 ELITGDACRGWLE 139


>gi|212224490|ref|YP_002307726.1| tRNA (1-methyladenosine) methyltransferase [Thermococcus onnurineus
           NA1]
 gi|212009447|gb|ACJ16829.1| tRNA (1-methyladenosine) methyltransferase [Thermococcus onnurineus
           NA1]
          Length = 253

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88
            D  I   I   +G   G TVIE G G G LT  L  +   A KVI  E  + F  I + 
Sbjct: 80  KDAGI---IIAYAGISPGDTVIEAGVGSGALTIFLANIVGPAGKVISYEVREDFARIAQK 136

Query: 89  --ISSQHPNRLEIIQDDALKVDFEKFFN 114
               +   +R+ I   +  +   E + +
Sbjct: 137 NVELAGFSDRVTIKLKNIYEGIDEDYAD 164


>gi|15606087|ref|NP_213464.1| hypothetical protein aq_674 [Aquifex aeolicus VF5]
 gi|2983274|gb|AAC06868.1| hypothetical protein aq_674 [Aquifex aeolicus VF5]
          Length = 239

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                 +I++GAG G L+  L      KV+  E D++   +L+     +   + +E+++ 
Sbjct: 41  PKRNYRIIDLGAGFGFLSITLAKKYGVKVVAFEYDERMVKLLRKNVKLNGVEHLVEVVEG 100

Query: 103 DALKVDFEKFFNISSPIRIIANLPYN 128
           D  ++  EK  +  S   +++N P+ 
Sbjct: 101 DIKEI--EKHLSRGSFNLVVSNPPFY 124


>gi|89100834|ref|ZP_01173686.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Bacillus sp.
           NRRL B-14911]
 gi|89084480|gb|EAR63629.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Bacillus sp.
           NRRL B-14911]
          Length = 212

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I ++        V+E G G GNLT  LL  G R V   E       I ++   +  +   
Sbjct: 37  ILDAVAGRASGHVLEFGPGTGNLTAKLLEKGLR-VTGAEPSPAMRKIAREKLGEQAS--- 92

Query: 99  IIQDDALKVDFEK 111
           I++ D L    + 
Sbjct: 93  IVEGDFLSYPDQD 105


>gi|222085270|ref|YP_002543800.1| 3-demethylubiquinone-9 3-methyltransferase protein [Agrobacterium
          radiobacter K84]
 gi|221722718|gb|ACM25874.1| 3-demethylubiquinone-9 3-methyltransferase protein [Agrobacterium
          radiobacter K84]
          Length = 256

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            I   +       ++EIG G G  TQ L   G   V+ ++   +   I ++  ++ PN
Sbjct: 27 DDIVAFADLAAKDRILEIGCGTGQATQGLARRG-FSVLALDPGSELIGIARENLAEFPN 84


>gi|10639797|emb|CAC11769.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 172

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +I +      G  ++++G GPG  T  L +    KV  ++   +   ILK+    H N
Sbjct: 10 DRIVDQLPISPGFDIVDLGCGPGFFTLPLASRTDGKVYAVDASDEMIEILKERIDGHSN 68


>gi|163795763|ref|ZP_02189728.1| plipastatin synthetase [alpha proteobacterium BAL199]
 gi|159179059|gb|EDP63594.1| plipastatin synthetase [alpha proteobacterium BAL199]
          Length = 1641

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 46  LDGITVIEIGAG-PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQD 102
           L G  V+EIG G    L++M +  GARKV  +E  +      +D  +      R+E+I  
Sbjct: 741 LAGKVVLEIGPGAQAVLSRMAIAAGARKVYAVEISEHVASQARDRLAAEGLAGRVEVIVG 800

Query: 103 DALKVDFEKFFNIS 116
           D   VD  +  +I 
Sbjct: 801 DIRTVDLPEPADIC 814


>gi|320157376|ref|YP_004189755.1| putative O-methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|319932687|gb|ADV87551.1| predicted O-methyltransferase [Vibrio vulnificus MO6-24/O]
          Length = 239

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +       +++IG G G L+ M     A   +  ++ D       ++  S  P  +RL +
Sbjct: 38  ADFHHCQNLLDIGTGTGLLSLMCAQRYAHLSITAVDIDAHAMEAAQENFSHSPWHSRLHL 97

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
              D LK++F   F+      II N PY   
Sbjct: 98  QHGDVLKLNFTHRFDG-----IICNPPYFNS 123


>gi|14591689|ref|NP_143777.1| hypothetical protein PH1948 [Pyrococcus horikoshii OT3]
 gi|3258392|dbj|BAA31075.1| 207aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 207

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 37/67 (55%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           S G ++G  V ++GAG G L+   L LGA++VI +E D++   +L +   +   + ++  
Sbjct: 44  SLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFI 103

Query: 102 DDALKVD 108
            D  + +
Sbjct: 104 GDVSEFN 110


>gi|325922051|ref|ZP_08183849.1| protein-L-isoaspartate carboxylmethyltransferase [Xanthomonas
           gardneri ATCC 19865]
 gi|325547461|gb|EGD18517.1| protein-L-isoaspartate carboxylmethyltransferase [Xanthomonas
           gardneri ATCC 19865]
          Length = 218

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPN 95
           ++ ++     G  V+EIG G G  T  L  L AR+V+ +E D       +     +   +
Sbjct: 70  RMLQALDLQPGEDVLEIGTGSGFSTACLAAL-AREVVSLEIDPALATAARANLDSTGLGS 128

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            + I   DA     E+ F+       +  LP  
Sbjct: 129 NVRIETADAFGWQSERRFDAICITGAVDTLPTQ 161


>gi|85543921|pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
           Ph1948 From Pyrococcus Horikoshii
 gi|85543922|pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
           Ph1948 From Pyrococcus Horikoshii
 gi|85543923|pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
           Ph1948 From Pyrococcus Horikoshii
 gi|85543924|pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
           Ph1948 From Pyrococcus Horikoshii
          Length = 207

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 37/67 (55%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           S G ++G  V ++GAG G L+   L LGA++VI +E D++   +L +   +   + ++  
Sbjct: 44  SLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFI 103

Query: 102 DDALKVD 108
            D  + +
Sbjct: 104 GDVSEFN 110


>gi|257899034|ref|ZP_05678687.1| glycosyl transferase [Enterococcus faecium Com15]
 gi|257836946|gb|EEV62020.1| glycosyl transferase [Enterococcus faecium Com15]
          Length = 528

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          KI  ++    G  V+E G G G LT+ L+     +V ++E D++ F  + + +  
Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69


>gi|145223449|ref|YP_001134127.1| methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
 gi|145215935|gb|ABP45339.1| Methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
          Length = 207

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +     +EIG G G  TQ++L   GA  V  ++ D        +  +++ NR+ ++Q 
Sbjct: 32  RLVPDTQALEIGCGSGYGTQLILERFGAATVDAVDLDPAMIRRAGERLARYGNRVRLVQG 91

Query: 103 DA 104
            A
Sbjct: 92  SA 93


>gi|304435942|gb|ADM33800.1| erythromycin ribosome methyltransferase Erm41 [Mycobacterium
          abscessus ATCC 19977]
 gi|304435946|gb|ADM33802.1| erythromycin ribosome methyltransferase Erm41 [Mycobacterium
          bolletii]
          Length = 78

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
          ++  G   L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E    
Sbjct: 7  RRQWGWYPLTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPG 64

Query: 82 FFPILKDISSQHP 94
              L+   ++  
Sbjct: 65 RARHLRSRFAEED 77


>gi|69247906|ref|ZP_00604538.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium DO]
 gi|227550503|ref|ZP_03980552.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium TX1330]
 gi|257880170|ref|ZP_05659823.1| glycosyl transferase [Enterococcus faecium 1,230,933]
 gi|257882972|ref|ZP_05662625.1| glycosyl transferase [Enterococcus faecium 1,231,502]
 gi|257888530|ref|ZP_05668183.1| glycosyl transferase [Enterococcus faecium 1,141,733]
 gi|257891447|ref|ZP_05671100.1| glycosyl transferase [Enterococcus faecium 1,231,410]
 gi|257897095|ref|ZP_05676748.1| glycosyl transferase [Enterococcus faecium Com12]
 gi|293377318|ref|ZP_06623522.1| methionine biosynthesis protein MetW [Enterococcus faecium PC4.1]
 gi|293572511|ref|ZP_06683490.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E980]
 gi|294620982|ref|ZP_06700181.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium U0317]
 gi|68194647|gb|EAN09133.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium DO]
 gi|227180404|gb|EEI61376.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium TX1330]
 gi|257814398|gb|EEV43156.1| glycosyl transferase [Enterococcus faecium 1,230,933]
 gi|257818630|gb|EEV45958.1| glycosyl transferase [Enterococcus faecium 1,231,502]
 gi|257824584|gb|EEV51516.1| glycosyl transferase [Enterococcus faecium 1,141,733]
 gi|257827807|gb|EEV54433.1| glycosyl transferase [Enterococcus faecium 1,231,410]
 gi|257833660|gb|EEV60081.1| glycosyl transferase [Enterococcus faecium Com12]
 gi|291599440|gb|EFF30458.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium U0317]
 gi|291607428|gb|EFF36771.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E980]
 gi|292644010|gb|EFF62116.1| methionine biosynthesis protein MetW [Enterococcus faecium PC4.1]
          Length = 528

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          KI  ++    G  V+E G G G LT+ L+     +V ++E D++ F  + + +  
Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69


>gi|15887649|ref|NP_353330.1| methyltransferase [Agrobacterium tumefaciens str. C58]
 gi|15155198|gb|AAK86115.1| methyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 197

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
             KK+A       G+ V+E+G G G +T+ +L  G +   +  IE    F+     +   
Sbjct: 40  TAKKMASVINPHSGLPVLELGPGTGVITKAILARGIKPESLTAIEYSTDFY---NQLLRS 96

Query: 93  HPNRLEIIQDDALKVD------FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           +P  +  +  DA  +D        + F+       + N P     +LL   +        
Sbjct: 97  YPG-VNFVNGDAFDLDATLGEHKGQMFDSVISAVPMLNFPMAARIKLLDELLKRVPHGRP 155

Query: 147 WESLTLL 153
              ++  
Sbjct: 156 VVQISYG 162


>gi|254467076|ref|ZP_05080487.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodobacterales bacterium Y4I]
 gi|206687984|gb|EDZ48466.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodobacterales bacterium Y4I]
          Length = 217

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL+   L K+ ++    +   V+++G G G  T  +    A+ VI +E+D+      + +
Sbjct: 61  LLEPRTLAKMLDALDIQNDELVLDVGCGLGYST-AVAARVAQMVIGVEEDEDLAEDAQAL 119

Query: 90  SSQHPNRLEIIQ 101
            S+      I+ 
Sbjct: 120 LSETGADNAIVH 131


>gi|116250242|ref|YP_766080.1| phospholipid N-methyltransferase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254890|emb|CAK05964.1| putative phospholipid N-methyltransferase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 223

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 50/210 (23%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93
           L +I  S  +     +IE+G G G  T+ LL  G  +  + +IE   +F   L+      
Sbjct: 34  LARIMTSEIAALDGPIIELGPGTGVFTRALLARGVSEADLTLIEYGPEFITSLQARFPTA 93

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISADTWPPFWESLTL 152
                ++Q DA  +     F       +++ LP  ++  R + + ++             
Sbjct: 94  ----RVLQMDAAHLAHADIFEGEPVGAVVSGLPLLSMSPRKIASILAGAFA--------- 140

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT---------S 203
                       +     Y                F   P    P P +           
Sbjct: 141 ----------YMRPGGAVYQ---------------FTYGPRCPVPRPILDRLGLKAVRIG 175

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKR 233
             +  +P  +          ++++E F  R
Sbjct: 176 GTVRNLPPASVYRISRRKPLELSRERFSYR 205


>gi|258614486|ref|ZP_05712256.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium DO]
          Length = 505

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          KI  ++    G  V+E G G G LT+ L+     +V ++E D++ F  + + +  
Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69


>gi|240102937|ref|YP_002959246.1| Ribosomal RNA adenine dimethylase, putative [Thermococcus
           gammatolerans EJ3]
 gi|239910491|gb|ACS33382.1| Ribosomal RNA adenine dimethylase, putative [Thermococcus
           gammatolerans EJ3]
          Length = 254

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88
            D  I   I   +G   G TVIE GAG G LT  L        KVI  E  + F+ I K 
Sbjct: 81  KDAGI---IIAYAGISPGDTVIEAGAGSGALTIFLANAVGPHGKVISYEVRKDFYEIAKK 137

Query: 89  --ISSQHPNRLEIIQDDA 104
               +    R+ +   + 
Sbjct: 138 NIELAGFSERVTLKNKNI 155


>gi|83814838|ref|YP_446014.1| hypothetical protein SRU_1904 [Salinibacter ruber DSM 13855]
 gi|294507930|ref|YP_003571988.1| Conserved hypothetical protein containing methyltransferase domain
           [Salinibacter ruber M8]
 gi|83756232|gb|ABC44345.1| conserved hypothetical protein [Salinibacter ruber DSM 13855]
 gi|294344258|emb|CBH25036.1| Conserved hypothetical protein containing methyltransferase domain
           [Salinibacter ruber M8]
          Length = 219

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 28  NFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIV 75
           NFL D ++          ++++ +     +   V+E G G G  ++ +L        +++
Sbjct: 43  NFLQDQDVAAIVPSSSFLVRRVCKWIDFEEDQVVVEYGPGNGVFSEFILDRMTADSTLLL 102

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +E +  F  +L++ +S  P  L +       VD     ++ +   I++ +P++
Sbjct: 103 VESNPDFVEMLEEWTSDDPRALVVQDRAERIVDILDAHDVDAVDYIVSGIPFS 155


>gi|30022898|ref|NP_834529.1| ribosomal RNA adenine dimethylase [Bacillus cereus ATCC 14579]
 gi|229112294|ref|ZP_04241833.1| RRNA adenine dimethylase [Bacillus cereus Rock1-15]
 gi|229130112|ref|ZP_04259073.1| RRNA adenine dimethylase [Bacillus cereus BDRD-Cer4]
 gi|29898457|gb|AAP11730.1| Ribosomal RNA adenine dimethylase [Bacillus cereus ATCC 14579]
 gi|228653327|gb|EEL09204.1| RRNA adenine dimethylase [Bacillus cereus BDRD-Cer4]
 gi|228671134|gb|EEL26439.1| RRNA adenine dimethylase [Bacillus cereus Rock1-15]
          Length = 192

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ FF  LK     
Sbjct: 27  LAKKMVDVIDFNKAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFFKELKRKFKD 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + ++   A  +K    +         +      ++   +    ++           
Sbjct: 87  EQN-VIVVHGSAENIKKYMGEHNIECIDYVLSGLPFTSLPEEVSKRILNNAMEAIHENGE 145

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 146 FITFQYSLVKKGFIQ 160


>gi|260222775|emb|CBA32671.1| hypothetical protein Csp_D33310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 396

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 10/125 (8%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK 78
             K+ +GQ FL     +  +  S     G +++E+GAG G L + + +      V  +EK
Sbjct: 7   SAKQELGQ-FLT-PAPIANLLASLLPPGGESILELGAGAGALLEAVSSRMPHLDVTAVEK 64

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALK-VDFEKFFNISSPIRIIANLPYNIGT--RLLF 135
           D      L+           +I  DA       +    +    I+ N PY +G   +   
Sbjct: 65  DVALKRELRARGLASL----LIGGDATSPKTIRRLAERAPFDYIVGNPPYAMGVSRKASI 120

Query: 136 NWISA 140
             +  
Sbjct: 121 KLLEQ 125


>gi|295695000|ref|YP_003588238.1| Methyltransferase type 11 [Bacillus tusciae DSM 2912]
 gi|295410602|gb|ADG05094.1| Methyltransferase type 11 [Bacillus tusciae DSM 2912]
          Length = 194

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQHPN 95
            +I +        TV +IGAGPG  T  L       V  I+ + +   +L+       P 
Sbjct: 25  DRILDLLAPNPADTVADIGAGPGYFTLPLAERTQGTVYAIDVEPRMLEVLQSRWPGGMPA 84

Query: 96  RLEIIQDDA 104
           R+  +   A
Sbjct: 85  RVRPLVGAA 93


>gi|110667142|ref|YP_656953.1| S-adenosylmethionine-dependent methyltransferase-like protein
           [Haloquadratum walsbyi DSM 16790]
 gi|109624889|emb|CAJ51298.1| S-adenosylmethionine-dependent methyltransferase homolog
           [Haloquadratum walsbyi DSM 16790]
          Length = 263

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 15/174 (8%)

Query: 22  KKYM---GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            K     GQ  L+D    + + +S   + G  ++EI  G G  T ML   GA  V +   
Sbjct: 18  SKRFSRGGQ--LIDRREKRAVLDSLNPVTGADILEIACGTGRFTAMLAERGANIVGIDIS 75

Query: 79  DQQFFPILKD-ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG-TRLLFN 136
           D       +   ++   + LE+++ DA ++     F  +    + A   +++  T   F 
Sbjct: 76  DAMLAQGRRKARNNGVNDTLELLRGDAARLP----FPDNHFDAVFAMRFFHLAETPGTF- 130

Query: 137 WISADTWPPFWESLTLLFQK--EVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
                              +   +         S  Y R S +    + A +  
Sbjct: 131 LTEMARVSNDIVFFDTFNHRSTRIIYNWLLPMGSHLYSR-SQVKKLLSDAELAM 183


>gi|308174427|ref|YP_003921132.1| AdoMet-dependent methyltransferase [Bacillus amyloliquefaciens DSM
           7]
 gi|307607291|emb|CBI43662.1| putative AdoMet-dependent methyltransferase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 213

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            NIL  I      L G  V+E G G GNLT  L     +KV  +E       +  D  S 
Sbjct: 35  DNILDSIVA----LSGSNVLEFGPGTGNLTAKLAAAN-KKVFGVEPSPSMRKLAADKLS- 88

Query: 93  HPNRLEIIQDDALKVDFEKF 112
             ++      D L+     F
Sbjct: 89  --DKAVFSDGDFLEFPAPPF 106


>gi|124262819|ref|YP_001023289.1| hypothetical protein Mpe_B0279 [Methylibium petroleiphilum PM1]
 gi|124262065|gb|ABM97054.1| hypothetical protein Mpe_B0279 [Methylibium petroleiphilum PM1]
          Length = 285

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 21  PKKYMGQNFLLDLNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIE 77
            +K +GQ F     + + I E   +    G TVIE   G G     L  L A    I +E
Sbjct: 13  ARKSLGQYF-TPRWVAEAIVERHFADLAPGATVIEPSCGDGV---FLHALPAHVNAIGVE 68

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            D  +    +  + +      ++  D L V      +      I+ N P++  T
Sbjct: 69  IDPHWAEQARRATGR-----TVLLGDFLNVPLPAQVD-----AIVGNPPFHADT 112


>gi|306820892|ref|ZP_07454512.1| possible SAM-dependent methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551006|gb|EFM38977.1| possible SAM-dependent methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 249

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 38  KIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           KI +  GS       ++E+G G GN+TQ LL  G  +V+ ++   +   I K+      +
Sbjct: 28  KIQDLLGSDKEDIKNILELGCGTGNITQRLLEYG-YEVVGVDISGEMLSIAKEKLVDFSD 86

Query: 96  RLEIIQDDALKVDFE 110
           ++  +Q D    DF+
Sbjct: 87  KVIFMQQDVCDFDFD 101


>gi|262277309|ref|ZP_06055102.1| hypothetical protein HIMB114_0729 [alpha proteobacterium HIMB114]
 gi|262224412|gb|EEY74871.1| hypothetical protein HIMB114_0729 [alpha proteobacterium HIMB114]
          Length = 168

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 23 KYMGQNFLL------DLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
          K   QN L         N+  KKIA    + +   VIEIG G G LTQ    +  + V +
Sbjct: 6  KKFIQNPLKICTVKASTNLSAKKIANLINNTENNNVIEIGGGTGALTQF---VKNKDVTI 62

Query: 76 IEKDQQFFPILKDISSQHPNR 96
          IE+D +   ILK    Q+  +
Sbjct: 63 IERDYELSEILKTNYPQYTIK 83


>gi|257885222|ref|ZP_05664875.1| glycosyl transferase [Enterococcus faecium 1,231,501]
 gi|257893565|ref|ZP_05673218.1| glycosyl transferase [Enterococcus faecium 1,231,408]
 gi|260560523|ref|ZP_05832697.1| glycosyl transferase [Enterococcus faecium C68]
 gi|261206562|ref|ZP_05921262.1| glycosyl transferase [Enterococcus faecium TC 6]
 gi|289565472|ref|ZP_06445921.1| glycosyl transferase [Enterococcus faecium D344SRF]
 gi|293560225|ref|ZP_06676725.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E1162]
 gi|314939151|ref|ZP_07846408.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0133a04]
 gi|314944057|ref|ZP_07850722.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0133C]
 gi|314950060|ref|ZP_07853347.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0082]
 gi|314952352|ref|ZP_07855360.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0133A]
 gi|314992292|ref|ZP_07857727.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0133B]
 gi|314996501|ref|ZP_07861541.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0133a01]
 gi|257821074|gb|EEV48208.1| glycosyl transferase [Enterococcus faecium 1,231,501]
 gi|257829944|gb|EEV56551.1| glycosyl transferase [Enterococcus faecium 1,231,408]
 gi|260073525|gb|EEW61853.1| glycosyl transferase [Enterococcus faecium C68]
 gi|260079272|gb|EEW66963.1| glycosyl transferase [Enterococcus faecium TC 6]
 gi|289162801|gb|EFD10652.1| glycosyl transferase [Enterococcus faecium D344SRF]
 gi|291605797|gb|EFF35231.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E1162]
 gi|313589345|gb|EFR68190.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0133a01]
 gi|313593159|gb|EFR72004.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0133B]
 gi|313595528|gb|EFR74373.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0133A]
 gi|313597351|gb|EFR76196.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0133C]
 gi|313641531|gb|EFS06111.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0133a04]
 gi|313643595|gb|EFS08175.1| methionine biosynthesis protein MetW [Enterococcus faecium
          TX0082]
          Length = 528

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          KI  ++    G  V+E G G G LT+ L+     +V ++E D++ F  + + +  
Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69


>gi|291288965|ref|YP_003517468.1| hypothetical protein pKF94_053 [Klebsiella pneumoniae]
 gi|290792096|gb|ADD63422.1| hypothetical protein pKF94-053 [Klebsiella pneumoniae]
          Length = 196

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95
           +++ E +   +   ++E  AG G + Q +     R K   +E        L      H  
Sbjct: 49  RRLVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVE----LHAGLARHLQAHFP 104

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            + I   D L+   E+ +      RII N P+N G  +
Sbjct: 105 EVRIWCGDFLEYHPERRY-----TRIIMNPPFNRGDDI 137


>gi|255975352|ref|ZP_05425938.1| glycoside transferase [Enterococcus faecalis T2]
 gi|307281870|ref|ZP_07562085.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0860]
 gi|255968224|gb|EET98846.1| glycoside transferase [Enterococcus faecalis T2]
 gi|306503824|gb|EFM73046.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0860]
          Length = 1047

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDYVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|152976789|ref|YP_001376306.1| methyltransferase type 11 [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|229892088|sp|A7GT53|Y3087_BACCN RecName: Full=Uncharacterized methyltransferase Bcer98_3087
 gi|152025541|gb|ABS23311.1| Methyltransferase type 11 [Bacillus cytotoxicus NVH 391-98]
          Length = 212

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            V+E G G GNLT  LL  G R V  IE  ++   I K+     P    I + D LK D 
Sbjct: 48  NVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRAIAKEKL---PEGFTITEGDFLKFDV 103

Query: 110 E 110
            
Sbjct: 104 P 104


>gi|294614666|ref|ZP_06694568.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E1636]
 gi|294619037|ref|ZP_06698532.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E1679]
 gi|291592404|gb|EFF24011.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E1636]
 gi|291594698|gb|EFF26080.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E1679]
          Length = 528

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          KI  ++    G  V+E G G G LT+ L+     +V ++E D++ F  + + +  
Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69


>gi|293568255|ref|ZP_06679579.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E1071]
 gi|291588967|gb|EFF20791.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E1071]
          Length = 528

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          KI  ++    G  V+E G G G LT+ L+     +V ++E D++ F  + + +  
Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSEFAQD 69


>gi|307325795|ref|ZP_07604995.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
 gi|306888583|gb|EFN19569.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
          Length = 275

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 6/120 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             + E +G+  G  V+E+GAG G  T  L   G R +  +E       + +   +     
Sbjct: 38  DDLTEMAGTGPGRRVLEVGAGTGKATLPLAERGCR-ITAVELGADMAAVARRNLAGF-ET 95

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           +EI+  D       +         +++   ++     +    +AD   P      +  Q 
Sbjct: 96  VEIVTADFETWPMPE----EPFDAVVSATAFHWIDPAVRLVKAADALRPGGALAVVATQH 151


>gi|313202286|ref|YP_004040944.1| protein-l-isoaspartate(d-aspartate) o-methyltransferase
           [Methylovorus sp. MP688]
 gi|312441602|gb|ADQ85708.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylovorus sp. MP688]
          Length = 220

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           +I ++        V+EIG G G LT  LL   A++V+ +E         +    QH
Sbjct: 71  RIVQALEISKTDRVLEIGTGSGYLT-ALLATLAKEVVSLEIHADLSVAAQRKLQQH 125


>gi|329909059|ref|ZP_08274991.1| Protein-L-isoaspartate O-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546558|gb|EGF31535.1| Protein-L-isoaspartate O-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 217

 Score = 48.7 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L+      ++ + +      +V+EIGAG G +   LL   AR V  IE ++    +
Sbjct: 57  GQSMLM-PKFEARMLQEAAVKKHESVLEIGAGSGYM-AALLARCARHVTSIEIEEDLQAL 114

Query: 86  LKDISSQHP-NRLEIIQDD 103
            +D   ++  + +++I  D
Sbjct: 115 AEDNLCRYGIDNVDVILGD 133


>gi|271969937|ref|YP_003344133.1| protein-L-isoaspartatecarboxylmethyltransferase-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270513112|gb|ACZ91390.1| Protein-L-isoaspartatecarboxylmethyltransferase- like protein
           [Streptosporangium roseum DSM 43021]
          Length = 385

 Score = 48.7 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           E++G  DG  V+E+G G G  T ++    G+  V  +E D       +D  +       +
Sbjct: 116 EAAGISDGDKVLEVGTGTGYSTALMCHRLGSHAVTSVEYDPVVAGRARDALTVAGYAPTL 175

Query: 100 IQDDAL 105
           +  D L
Sbjct: 176 VTGDGL 181


>gi|328545938|ref|YP_004306047.1| methyltransferase domain family protein [polymorphum gilvum
           SL003B-26A1]
 gi|326415678|gb|ADZ72741.1| Methyltransferase domain family protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 204

 Score = 48.7 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDIS 90
             + ++IA       G   +E+G G G +T+ +   G R   ++ IE +  F  +L+   
Sbjct: 41  PELARRIASFLPVRPGGRYLELGPGTGVVTKAIFDRGVRPEDLVTIEYNADFCRLLRQRY 100

Query: 91  SQHPNRLEIIQDD--ALKVDFEKFFNISS 117
                 L  IQ D  AL+   E+   + S
Sbjct: 101 PA----LTTIQGDAYALRKTLEQLGPVES 125


>gi|152973735|ref|YP_001338774.1| hypothetical protein KPN_pKPN5p08164 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958517|gb|ABR80544.1| hypothetical protein KPN_pKPN5p08164 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 182

 Score = 48.7 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95
           +++ E +   +   ++E  AG G + Q +     R K   +E        L      H  
Sbjct: 40  RRLVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVE----LHAGLARHLQAHFP 95

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            + I   D L+   E+ +      RII N P+N G  +
Sbjct: 96  EVRIWCGDFLEYHPERRY-----TRIIMNPPFNRGDDI 128


>gi|154686868|ref|YP_001422029.1| YrrT [Bacillus amyloliquefaciens FZB42]
 gi|229892085|sp|A7Z722|Y2438_BACA2 RecName: Full=Uncharacterized methyltransferase RBAM_024380
 gi|154352719|gb|ABS74798.1| YrrT [Bacillus amyloliquefaciens FZB42]
          Length = 213

 Score = 48.7 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            NIL  I      L G  V+E G G GNLT  L     +KV  +E       +  D  S 
Sbjct: 35  DNILDSIVA----LSGSNVLEFGPGTGNLTAKLAAAN-KKVFGVEPSPSMRKLAADKLS- 88

Query: 93  HPNRLEIIQDDALKVDFEKF 112
             ++      D L+     F
Sbjct: 89  --DKAVFSDGDFLEFPAPPF 106


>gi|302679536|ref|XP_003029450.1| hypothetical protein SCHCODRAFT_236703 [Schizophyllum commune H4-8]
 gi|300103140|gb|EFI94547.1| hypothetical protein SCHCODRAFT_236703 [Schizophyllum commune H4-8]
          Length = 1048

 Score = 48.7 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 43/260 (16%)

Query: 30  LLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           L + N  ++IAE+      +G T+IE   GPG L++ +L L   +V  +   + + P L 
Sbjct: 147 LHNANTAREIAEAYIPEGSEGKTIIEAYPGPGALSRAILALPKERVKRLILVENYPPFLD 206

Query: 88  DI--SSQHPNRLEIIQD---------DALK-------VDFEKFFNISSPIRIIANLPYNI 129
            +    +   R+ +++          D LK          +    ++  +  + +LP   
Sbjct: 207 YLLPLEKLDPRVTVVRASPNAWQTYDDLLKEHLPAEEYKVDWEAGVNERVSFVCSLPMGN 266

Query: 130 GTRL----LFNWISADTWPPFWES--LTLLFQKEVGERITAQKNSPH-YGRLSVLTGWRT 182
              +        I    W        + +   +E+  R TA         + SV+T    
Sbjct: 267 AGEMFYQQWVRSIPDKQWLFALGRVPMHITMTEELWIRATASVLERTLRSKASVITEATV 326

Query: 183 KAT--MMFDISPH--VFFPSPKVTSTV----------IHFIPHLNPI--PCCLESLKKIT 226
           +A   +  ++ PH   FFP+ KV  ++             +P    I     ++    I 
Sbjct: 327 QAKQVIAHNLRPHHEHFFPARKVKGSLANANAYGTIATTIVPKKWQIIEEGKMDMWDFIV 386

Query: 227 QEAFGKRRKTLRQSLKRLGG 246
           +  F ++  T+ ++L  L  
Sbjct: 387 RNMFNRKASTVDKALPYLAP 406


>gi|326202224|ref|ZP_08192094.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
 gi|325988019|gb|EGD48845.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
          Length = 274

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 15/149 (10%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEII 100
           G  DG+ ++E G+GPG +T+ +L       +  +E D       +   S+   PN+ ++I
Sbjct: 42  GLSDGMAIVESGSGPGFITEKILKRFPNVNITAVEIDPLLVDYARKYLSEQCLPNKYQVI 101

Query: 101 QDDALKVDFEK-FFNISSPIRIIANLPYNI-GTRLLFNWISADTWPPFWESLTLLFQKEV 158
           Q   ++ D  +  ++ +    ++ +LP  +   R +   +       F ++       + 
Sbjct: 102 QKSIMETDLPENSYDFAITRLVLEHLPNPVKAVREIVRILKPGGKAIFVDN-------DF 154

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMM 187
              I A  N      L        +A   
Sbjct: 155 EMHIMAYPNVTDLREL---YNSYCQARYA 180


>gi|223985109|ref|ZP_03635205.1| hypothetical protein HOLDEFILI_02510 [Holdemania filiformis DSM
           12042]
 gi|223962931|gb|EEF67347.1| hypothetical protein HOLDEFILI_02510 [Holdemania filiformis DSM
           12042]
          Length = 260

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 13/130 (10%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+EIG G G  T  +L  G R +  +E   Q   + +   S +P+   ++    
Sbjct: 39  LTSDSEVLEIGIGTGQATTPILKTGCR-LTAVELGDQLAALTRKKFSDYPD-FTVVTSAF 96

Query: 105 LKVDFEK-FFNISSPIRIIANLPYNIGTRLLFNWI----------SADTWPPFWESLTLL 153
              +  +  F++         +P  IG   ++  +              +    E+L   
Sbjct: 97  QDYESPENRFDLIYSAAAFHWIPEEIGYPKVYALLKPGGVFARFAKHGNYRQSNEALYEE 156

Query: 154 FQKEVGERIT 163
            QK   + + 
Sbjct: 157 IQKVYAQYMA 166


>gi|149176088|ref|ZP_01854704.1| hypothetical protein PM8797T_29178 [Planctomyces maris DSM 8797]
 gi|148844955|gb|EDL59302.1| hypothetical protein PM8797T_29178 [Planctomyces maris DSM 8797]
          Length = 225

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 11/120 (9%)

Query: 51  VIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           V+EIG G G +T+ ++       ++ ++E + +F  IL           EI    A+   
Sbjct: 45  VLEIGPGTGAVTRQIVKQIRPGDQLDLVELNDKFVEILHKRFDTERGFQEIKHQTAIHNC 104

Query: 109 FEKFFNISSPIRII------ANLPYNIGTRLL---FNWISADTWPPFWESLTLLFQKEVG 159
             + +  +     I       N P  + + +    F  +       ++E + +   ++V 
Sbjct: 105 PLQDYGAAEEYDYIVSGLPLNNFPTELVSDIFKAYFRLLKPGGVLSYFEYMYVRPVRKVV 164


>gi|295113349|emb|CBL31986.1| Methionine biosynthesis protein MetW. [Enterococcus sp. 7L76]
          Length = 218

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|257082122|ref|ZP_05576483.1| glycosyl transferase, group 2 family protein [Enterococcus faecalis
           E1Sol]
 gi|256990152|gb|EEU77454.1| glycosyl transferase, group 2 family protein [Enterococcus faecalis
           E1Sol]
          Length = 1047

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|239816693|ref|YP_002945603.1| methyltransferase type 11 [Variovorax paradoxus S110]
 gi|239803270|gb|ACS20337.1| Methyltransferase type 11 [Variovorax paradoxus S110]
          Length = 225

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  ++ +        +V+EIG G G +   LL   A +V+ +E D      
Sbjct: 65  GQVML-SPKVEARMLQDLHVQKHESVLEIGTGSGFM-AALLAHRAAQVLSLEIDPALAAR 122

Query: 86  LKDISSQHP-NRLEIIQDD-ALKVDFEKFFNISSPIRIIANLPYNI 129
             +   Q+    +E+   D A+ +     F++      +A +P N+
Sbjct: 123 AAETLRQNGVANVEVRNADGAVPLPSGPSFDVIVLSGSVARIPQNL 168


>gi|315172790|gb|EFU16807.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX1346]
          Length = 1047

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|256956572|ref|ZP_05560743.1| glycosyl transferase [Enterococcus faecalis DS5]
 gi|256947068|gb|EEU63700.1| glycosyl transferase [Enterococcus faecalis DS5]
 gi|315035728|gb|EFT47660.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0027]
          Length = 1047

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|256853634|ref|ZP_05558999.1| glycosyl transferase [Enterococcus faecalis T8]
 gi|307292439|ref|ZP_07572295.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0411]
 gi|256710577|gb|EEU25620.1| glycosyl transferase [Enterococcus faecalis T8]
 gi|306496568|gb|EFM66129.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0411]
 gi|315028181|gb|EFT40113.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX4000]
          Length = 1047

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|256617241|ref|ZP_05474087.1| glycosyl transferase [Enterococcus faecalis ATCC 4200]
 gi|307277285|ref|ZP_07558389.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX2134]
 gi|256596768|gb|EEU15944.1| glycosyl transferase [Enterococcus faecalis ATCC 4200]
 gi|306506215|gb|EFM75381.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX2134]
          Length = 1047

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|315149167|gb|EFT93183.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0012]
          Length = 1047

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|307286612|ref|ZP_07566704.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0109]
 gi|306502323|gb|EFM71604.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0109]
 gi|315164328|gb|EFU08345.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX1302]
          Length = 1047

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|260072677|gb|ACX30574.1| protein-L-isoaspartate carboxylmethyltransferase [uncultured SUP05
           cluster bacterium]
 gi|269468436|gb|EEZ80101.1| protein-L-isoaspartate carboxylmethyltransferase [uncultured SUP05
           cluster bacterium]
          Length = 217

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-FPILKD 88
           +L   I  ++ ++        V+E+G G G LT ++  L  + +  IE D+       + 
Sbjct: 60  MLSPKIEGRLLDALNIQKDENVLEVGTGSGYLTAVISKLC-KSITSIEIDEDLSVSAQEK 118

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFF 113
           ++S + N  ++   DA K      F
Sbjct: 119 LNSLNINNTQLEVGDASKGWSSNDF 143


>gi|332284248|ref|YP_004416159.1| methyltransferase type 12 [Pusillimonas sp. T7-7]
 gi|330428201|gb|AEC19535.1| methyltransferase type 12 [Pusillimonas sp. T7-7]
          Length = 220

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           +  ++A          +IE+G G G +T+ LL  G    +++V+E   +F   L+     
Sbjct: 47  LAHRMAREVAHYKDGLIIELGPGTGVVTKALLKQGVAPERLLVVEYSNRFVQRLRKQFPH 106

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII------ANLPYNIGTRLLFNW 137
               + I+  +A   D  +       +  I       +LP  +   ++  W
Sbjct: 107 ----VTIVHGNA--ADLCQIVPKGVKVSAIVSSLPLCSLPEAVTQSIVQQW 151


>gi|78486012|ref|YP_391937.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thiomicrospira crunogena XCL-2]
 gi|78364298|gb|ABB42263.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thiomicrospira crunogena XCL-2]
          Length = 215

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I  +I ++  + +  +V+E+G G G  T  LL   A +V  +E     FP L++I+  
Sbjct: 63  PRIEARILQALDTAENESVLEVGTGSGY-TTALLAKSANEVTTVEI----FPSLQEIAKT 117

Query: 93  HPNRLEIIQ---DDA 104
             N    I     DA
Sbjct: 118 RLNDFNNIHFEQGDA 132


>gi|255597931|ref|XP_002536886.1| conserved hypothetical protein [Ricinus communis]
 gi|223518211|gb|EEF25497.1| conserved hypothetical protein [Ricinus communis]
          Length = 430

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 24  YMGQ--------NFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           ++GQ        N LLD N ++    +       G  V+E+G G G L+       A KV
Sbjct: 141 HLGQFIPLHYHHNMLLDANRMRNFKAAIDAVVFKGARVLELGGGTGVLSCF-AAAHASKV 199

Query: 74  IVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNI 115
             +E +       + + + +   +++E++  DA +    +  ++
Sbjct: 200 YCVEFNPDMVAESRRLLAMNAQGHKVEVVHADAFEYLPPEPVDV 243


>gi|150017113|ref|YP_001309367.1| ribosomal RNA adenine dimethylase [Clostridium beijerinckii NCIMB
           8052]
 gi|149903578|gb|ABR34411.1| ribosomal RNA adenine dimethylase [Clostridium beijerinckii NCIMB
           8052]
          Length = 185

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 5/134 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDI 89
              +  K+ E    L+   ++E G G G  T+ +L         I IE ++ F+ ILK+ 
Sbjct: 24  SEKLAHKMVEDINFLNASCIVEYGPGTGVFTEKILDKKKDSTIFIAIEYNEDFYKILKEK 83

Query: 90  SSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
                N   +I D A  LK    K+        +      ++   +  + +S        
Sbjct: 84  FKNRTN-FVLINDSAENLKEHLNKYNIDKVDYIVSGLPFASLPDSMSKSILSVTKEILKG 142

Query: 148 ESLTLLFQKEVGER 161
             + + FQ  + + 
Sbjct: 143 HGVFITFQYTLLKI 156


>gi|307944664|ref|ZP_07660003.1| FkbM family methyltransferase [Roseibium sp. TrichSKD4]
 gi|307772091|gb|EFO31313.1| FkbM family methyltransferase [Roseibium sp. TrichSKD4]
          Length = 224

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 16/83 (19%)

Query: 31 LDLN-ILKKIAESSG---------------SLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
          LD N +  KI ++                    G  ++EIGAG G +T +L  +   KV 
Sbjct: 13 LDENEVAGKIVDALLNKTYESDEAYCVKNLVKPGDRILEIGAGMGFITTILSQIEDVKVW 72

Query: 75 VIEKDQQFFPILKDISSQHPNRL 97
            + +     +LK  ++ + N +
Sbjct: 73 SFDANPALIELLKRTATINNNNV 95


>gi|15920361|ref|NP_376030.1| L-isoaspartate O-methyltransferase [Sulfolobus tokodaii str. 7]
 gi|15621143|dbj|BAB65139.1| 211aa long hypothetical protein-L-isoaspartate O-methyltransferase
           [Sulfolobus tokodaii str. 7]
          Length = 211

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNR 96
           K+ +         V+EIG G G  T ++   +G + V  +E D++ F I K    ++   
Sbjct: 66  KMLDLLELKKEDKVLEIGTGIGYYTALIAEIVGGKNVYTVEYDEEMFNIAKQNLKEY--N 123

Query: 97  LEIIQDD 103
           + +I  D
Sbjct: 124 VNLIFGD 130


>gi|329902392|ref|ZP_08273096.1| hypothetical protein IMCC9480_229 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548807|gb|EGF33441.1| hypothetical protein IMCC9480_229 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 301

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 13/104 (12%)

Query: 24  YMGQ--------NFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           Y+GQ        N L+D   +K   E+       G  V+E+G G G L+       A KV
Sbjct: 11  YLGQFIPLHYHHNMLMDQRRMKNFREAISQVVFPGAKVLELGGGTGVLS-FFAAATAEKV 69

Query: 74  IVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNI 115
             +E +       + + ++  H +++E+IQ DA      +  ++
Sbjct: 70  WCVEFNPDMVDEARRLLARNAHGHKIEVIQADAFAYLPPEPVDV 113


>gi|240167928|ref|ZP_04746587.1| hypothetical protein MkanA1_01340 [Mycobacterium kansasii ATCC
           12478]
          Length = 190

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +    G   +EIG G G   ++L+     ++  +E D      L+++   + +R  II  
Sbjct: 30  ADVDLGDNTLEIGPGYGAFLRILVDKTP-QLTAVEIDAPMAQRLQEL---YGDRARIIIG 85

Query: 103 D 103
           D
Sbjct: 86  D 86


>gi|324998850|ref|ZP_08119962.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Pseudonocardia sp. P1]
          Length = 208

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 45/160 (28%), Gaps = 18/160 (11%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                  V+E+G G G  T+++L   A  +V  I+ D       K   S +  R+ +   
Sbjct: 32  ALPAEARVLEVGCGAGYGTELILRRFATARVDAIDLDPAMVTRAKRRLSGYGGRVRLATG 91

Query: 103 D------ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           D      AL  +   +  +     +     +      +   +    W  F E        
Sbjct: 92  DMTDLRAALDAEDGSYDAVFDFAIVHHVPDWRAAVAEIVRVLKPGGWFYFDEVTAAALAT 151

Query: 157 EVGERITAQKNSPHYGR-----------LSVLTGWRTKAT 185
                +        +             L V   WRT+  
Sbjct: 152 RGYRWLFDHPTEDRFTASEFVAELERQGLQVGARWRTRVR 191


>gi|167619121|ref|ZP_02387752.1| hypothetical protein BthaB_22641 [Burkholderia thailandensis Bt4]
          Length = 214

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             D   VIE+GAG G  T+ LL+ G  A +++++E D  F   L+         L ++  
Sbjct: 39  PGDSARVIELGAGTGVFTRELLSRGVAADRLVLVEADPAFAATLRRRFPA----LRVMNM 94

Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126
           DA ++      F  +    +++ LP
Sbjct: 95  DAAELGITHGLFGDARASTVVSGLP 119


>gi|154244312|ref|YP_001415270.1| phospholipid N-methyltransferase [Xanthobacter autotrophicus Py2]
 gi|154158397|gb|ABS65613.1| phospholipid N-methyltransferase [Xanthobacter autotrophicus Py2]
          Length = 205

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 13/90 (14%)

Query: 27  QNFLL-------DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIE 77
           QN L           + K +A          VIE+G G G +T+ L+  G    ++ +IE
Sbjct: 33  QNPLKTGAVAPSSPALAKMMASYLDPKQDGPVIELGPGTGPVTKALIQRGFAPERLFLIE 92

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKV 107
            + +F  +L+           +I  DA  +
Sbjct: 93  YNPEFCALLRLRYPGA----TVINGDAYTL 118


>gi|281356970|ref|ZP_06243460.1| ribosomal RNA adenine methylase transferase [Victivallis vadensis
           ATCC BAA-548]
 gi|281316528|gb|EFB00552.1| ribosomal RNA adenine methylase transferase [Victivallis vadensis
           ATCC BAA-548]
          Length = 191

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
           + + +A   G  +   V+E+G G G +T+ L+       K++ +E D+     LK    +
Sbjct: 27  LCRAMASEIGVENAGLVVELGPGTGVITRELVRRLPENGKLLAVELDELLCEHLKRTFPE 86

Query: 93  HPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNI 129
               +EI  D A  +    K   +     +++ LP+ +
Sbjct: 87  ----VEICHDSASNLGGILKERGLPPVNAVVSGLPWAV 120


>gi|302542583|ref|ZP_07294925.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302460201|gb|EFL23294.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 369

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            ++    G+ V+EIG G G    +L    GA  V  +E D     +     ++      +
Sbjct: 104 AAADVRPGMRVLEIGTGTGYNAALLCERAGAVNVTSVEVDAGLAEVAARRLAEAGYHPRV 163

Query: 100 IQDD 103
           +  D
Sbjct: 164 VAAD 167


>gi|152973677|ref|YP_001338718.1| hypothetical protein KPN_pKPN4p07108 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|294496753|ref|YP_003560446.1| hypothetical protein pKpQIL_p069 [Klebsiella pneumoniae]
 gi|150958459|gb|ABR80487.1| hypothetical protein KPN_pKPN4p07108 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|293339462|gb|ADE44016.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 187

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95
           +++ E +   +   ++E  AG G + Q +     R K   +E        L      H  
Sbjct: 40  RRLVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVE----LHAGLARHLQAHFP 95

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            + I   D L+   E+ +      RII N P+N G  +
Sbjct: 96  EVRIWCGDFLEYHPERRY-----TRIIMNPPFNRGDDI 128


>gi|324120131|ref|YP_004249892.1| hypothetical protein pc15-k-041 [Klebsiella pneumoniae]
 gi|323388259|gb|ADX60408.1| hypothetical protein pc15-k-041 [Klebsiella pneumoniae]
          Length = 187

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95
           +++ E +   +   ++E  AG G + Q +     R K   +E        L      H  
Sbjct: 40  RRLVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVE----LHAGLARHLQAHFP 95

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            + I   D L+   E+ +      RII N P+N G  +
Sbjct: 96  EVRIWCGDFLEYHPERRY-----TRIIMNPPFNRGDDI 128


>gi|329769164|ref|ZP_08260584.1| hypothetical protein HMPREF0433_00348 [Gemella sanguinis M325]
 gi|328839383|gb|EGF88961.1| hypothetical protein HMPREF0433_00348 [Gemella sanguinis M325]
          Length = 215

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 13/146 (8%)

Query: 35  ILKKI-----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           I+ KI      +         ++EIG   G  +  L      KV  IE+D + + I K  
Sbjct: 37  IIDKIGIRFLIQMLKIKKAKNLLEIGTAIGYTSIKLAETIGCKVTTIERDDKMYNIAKSN 96

Query: 90  SSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
             +    +++ ++  DAL++  E   N    I  I        +R  F        P F 
Sbjct: 97  VEKRDLTDKITLLHADALELQDEVVRNAPYDIVFIDGAKSQ--SRKFFELYE----PYFA 150

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGR 173
           E + +L    + + + A  +   + R
Sbjct: 151 EDVVVLTDNVLFKGMVADPSIIRHSR 176


>gi|289548934|ref|YP_003473922.1| methyltransferase small [Thermocrinis albus DSM 14484]
 gi|289182551|gb|ADC89795.1| methyltransferase small [Thermocrinis albus DSM 14484]
          Length = 238

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
           G     TV+++GAG G L+ +     +  V+ +E+D     +L+     +Q  +++ +++
Sbjct: 37  GIKRTSTVVDLGAGFGALSVLTALRYSCHVLAVERDSLMLELLRYNVKVNQLQDKVSVVE 96

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            D    D E F    +   +I N P+    
Sbjct: 97  GDV--RDVEHFLKRYTADAVIVNPPFYPAH 124


>gi|227818817|ref|YP_002822788.1| L-isoaspartyl protein carboxyl methyltransferase [Sinorhizobium
           fredii NGR234]
 gi|36959075|gb|AAQ87500.1| Protein-L-isoaspartate O-methyltransferase [Sinorhizobium fredii
           NGR234]
 gi|227337816|gb|ACP22035.1| L-isoaspartyl protein carboxyl methyltransferase protein
           [Sinorhizobium fredii NGR234]
          Length = 653

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++AE++      +V+E+GAG G    +L  L A +V  IE+       L + +S 
Sbjct: 64  PYIVARMAEAAEIEPDDSVLEVGAGSGYAAAVLSHL-AERVFAIER----HRTLAETASA 118

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L     D    D  K +   +P   I
Sbjct: 119 RLLKLRRSNVDVRASDGTKGWPERAPFDAI 148


>gi|167581043|ref|ZP_02373917.1| hypothetical protein BthaT_23042 [Burkholderia thailandensis TXDOH]
 gi|257138354|ref|ZP_05586616.1| hypothetical protein BthaA_03947 [Burkholderia thailandensis E264]
          Length = 214

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             D   VIE+GAG G  T+ LL+ G  A +++++E D  F   L+         L ++  
Sbjct: 39  PGDSARVIELGAGTGVFTRELLSRGVAADRLVLVEADPAFAATLRRRFPA----LRVMNM 94

Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126
           DA ++      F  +    +++ LP
Sbjct: 95  DAAELGITHGLFGDARASTVVSGLP 119


>gi|190890143|ref|YP_001976685.1| phospholipid N-methyltransferase [Rhizobium etli CIAT 652]
 gi|190695422|gb|ACE89507.1| phospholipid N-methyltransferase protein [Rhizobium etli CIAT 652]
          Length = 222

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93
           L +I  S  +     +IE+G G G  T+ LL  G  +  + +IE   +F   L+      
Sbjct: 34  LARIMTSEIAALDGPIIELGPGTGVFTRALLARGVSEADLTLIEYGPEFIDALQARFPAA 93

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISA 140
                ++Q DA  +     F+      +I+ LP  ++  R + + ++ 
Sbjct: 94  ----RVLQMDAAHLAQADIFDDEPVGAVISGLPLLSMSPRKIASILAG 137


>gi|152981849|ref|YP_001353643.1| hypothetical protein mma_1953 [Janthinobacterium sp. Marseille]
 gi|151281926|gb|ABR90336.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 310

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 13/104 (12%)

Query: 24  YMGQ--------NFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           Y+GQ        N L+D   +     +       G  V+E+G G G L+       A KV
Sbjct: 11  YLGQFIPVHYHHNMLMDNRRMSGFKAAITHLVAPGAKVLELGGGTGVLSWF-AAARAEKV 69

Query: 74  IVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNI 115
             +E +       K   +Q+ N  R+E+IQ DA +    +  ++
Sbjct: 70  WCVEYNPDLVAEAKRFLAQNVNGERVEVIQGDAFEYLPPEPVDV 113


>gi|256963460|ref|ZP_05567631.1| glycosyl transferase [Enterococcus faecalis HIP11704]
 gi|256953956|gb|EEU70588.1| glycosyl transferase [Enterococcus faecalis HIP11704]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWGEYFAGKTFDYIV 93


>gi|209547713|ref|YP_002279630.1| methyltransferase type 12 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533469|gb|ACI53404.1| Methyltransferase type 12 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 223

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 62/210 (29%), Gaps = 50/210 (23%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93
           L +I  S  +     +IE+G G G  T+ LL  G  +  + +IE   +F   L       
Sbjct: 34  LARIMTSEIAALDGPIIELGPGTGVFTRALLARGVSEADLTLIEYGPEFITALHARFPTA 93

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISADTWPPFWESLTL 152
                ++Q DA  +     F       +++ LP  ++  R + + ++             
Sbjct: 94  ----RVLQMDAAHLAHADIFEGEPVGAVVSGLPLLSMSPRKIASILAGAFA--------- 140

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT---------S 203
                       +     Y                F   P    P P +           
Sbjct: 141 ----------YMRPGGAVYQ---------------FTYGPRCPVPRPILDRLGLKAVRIG 175

Query: 204 TVIHFIPHLNPIPCCLESLKKITQEAFGKR 233
             +  +P  +          ++++E F  R
Sbjct: 176 GTVRNLPPASVYRISRRKPLELSRERFSYR 205


>gi|297160902|gb|ADI10614.1| protein-L-isoaspartate carboxylmethyltransferase [Streptomyces
           bingchenggensis BCW-1]
          Length = 417

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            +++  + E+    D  TV+EIGAG G N   +   LG+  V+ ++ D     + K    
Sbjct: 91  PSLMAHMLEALDVQDADTVLEIGAGTGYNAALLSHRLGSDNVVTVDVDPDLVAVAKTRLR 150

Query: 92  QHPNRLEIIQDD 103
           +      ++  D
Sbjct: 151 EAGYEPTLVVGD 162


>gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate O-methyltransferase [Herbaspirillum
           seropedicae SmR1]
 gi|124483492|emb|CAM32619.1| Protein-L-isoaspartate O-methyltransferase protein [Herbaspirillum
           seropedicae]
 gi|300072609|gb|ADJ62008.1| protein-L-isoaspartate O-methyltransferase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 221

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           G+N L    I  +I + +       V+EIGAG G +   LL   AR V  +E   +   +
Sbjct: 57  GENMLA-PKIEARILQEANVKKHEYVLEIGAGSGYM-AALLAHKARHVTTVEISPELKAL 114

Query: 86  LKDISSQH 93
            +   S +
Sbjct: 115 AERNLSDY 122


>gi|73540455|ref|YP_294975.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           eutropha JMP134]
 gi|72117868|gb|AAZ60131.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           eutropha JMP134]
          Length = 217

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  +I +         V+EIGAG G +   LL   AR V+ ++      P 
Sbjct: 57  GQNMLP-PRVEARILQELAVRKHENVLEIGAGSGYM-AALLANRARHVLTVDI----VPE 110

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L  ++ Q+     +   D  + +    +  ++P  +I 
Sbjct: 111 LVTLARQNLANAGVTNVDVAEGNAADGWAAAAPYDVIC 148


>gi|209522113|ref|ZP_03270761.1| conserved hypothetical protein [Burkholderia sp. H160]
 gi|209497449|gb|EDZ97656.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 165

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 59/164 (35%), Gaps = 22/164 (13%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
             ++E+GAG G +T+ L+   +  +++V E  ++    L+        R E+I   A   
Sbjct: 9   DAIVEVGAGTGAITEALVKRNSEARLVVFELSEKLADGLQARFP----RAEVIAG-AFHE 63

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           +     N+     +++ LP        F  +   T  P  E+LT + + +    +     
Sbjct: 64  NVSALHNLPPKTVVVSALP--------FRSLPPRTVRPTVEALTDVLRVDQARCLV---Q 112

Query: 168 SPHYGRLSVLTGWRTKATMMFDI-----SPHVFFPSPKVTSTVI 206
             +  R             +  +       +V+    K+   ++
Sbjct: 113 FSYRSRAPFTAPADFSWRKVCTVWRNAPPANVWELHGKLDVDLM 156


>gi|307272367|ref|ZP_07553623.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0855]
 gi|306510921|gb|EFM79935.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0855]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|257084737|ref|ZP_05579098.1| glycosyl transferase [Enterococcus faecalis Fly1]
 gi|256992767|gb|EEU80069.1| glycosyl transferase [Enterococcus faecalis Fly1]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|229545301|ref|ZP_04434026.1| family 2 glycosyl transferase [Enterococcus faecalis TX1322]
 gi|229309651|gb|EEN75638.1| family 2 glycosyl transferase [Enterococcus faecalis TX1322]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|254470884|ref|ZP_05084287.1| ribosomal RNA adenine methylase transferase [Pseudovibrio sp.
           JE062]
 gi|211960026|gb|EEA95223.1| ribosomal RNA adenine methylase transferase [Pseudovibrio sp.
           JE062]
          Length = 155

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNR 96
           +AE         V+E+G G G +T+ +L  G  K  +  +E    F   L +        
Sbjct: 1   MAEFVPVQSQNPVLELGPGTGPVTKAILEAGISKERLTCLEYSPDFCEHLSEKFEG---- 56

Query: 97  LEIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNW 137
           L ++Q DA  +         +S   ++++LP  I   + F  
Sbjct: 57  LNVVQGDAYNMHPSLGHIEPNSLCAVVSSLPL-ISRPMEFRL 97


>gi|329569830|gb|EGG51589.1| glycosyltransferase, group 2 family protein [Enterococcus faecalis
           TX1467]
          Length = 972

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|315161856|gb|EFU05873.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0645]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|315146146|gb|EFT90162.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX2141]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|315033460|gb|EFT45392.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0017]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|294779037|ref|ZP_06744450.1| methionine biosynthesis protein MetW [Enterococcus faecalis PC1.1]
 gi|307270359|ref|ZP_07551664.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX4248]
 gi|294453867|gb|EFG22256.1| methionine biosynthesis protein MetW [Enterococcus faecalis PC1.1]
 gi|306513267|gb|EFM81894.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX4248]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|257090451|ref|ZP_05584812.1| glycosyl transferase [Enterococcus faecalis CH188]
 gi|312903801|ref|ZP_07762974.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0635]
 gi|256999263|gb|EEU85783.1| glycosyl transferase [Enterococcus faecalis CH188]
 gi|310632875|gb|EFQ16158.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0635]
 gi|315578158|gb|EFU90349.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0630]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|257079498|ref|ZP_05573859.1| glycosyl transferase [Enterococcus faecalis JH1]
 gi|256987528|gb|EEU74830.1| glycosyl transferase [Enterococcus faecalis JH1]
          Length = 1041

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 3   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 60

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 61  STDA------FYGNIDENDWVEYFAGKTFDYIV 87


>gi|256961450|ref|ZP_05565621.1| glycosyl transferase [Enterococcus faecalis Merz96]
 gi|293382812|ref|ZP_06628733.1| glycosyl transferase, group 2 family [Enterococcus faecalis R712]
 gi|293387979|ref|ZP_06632512.1| glycosyl transferase, group 2 family [Enterococcus faecalis S613]
 gi|312905895|ref|ZP_07764909.1| methionine biosynthesis protein MetW [Enterococcus faecalis DAPTO
           512]
 gi|312908957|ref|ZP_07767820.1| methionine biosynthesis protein MetW [Enterococcus faecalis DAPTO
           516]
 gi|256951946|gb|EEU68578.1| glycosyl transferase [Enterococcus faecalis Merz96]
 gi|291079803|gb|EFE17167.1| glycosyl transferase, group 2 family [Enterococcus faecalis R712]
 gi|291082635|gb|EFE19598.1| glycosyl transferase, group 2 family [Enterococcus faecalis S613]
 gi|310628062|gb|EFQ11345.1| methionine biosynthesis protein MetW [Enterococcus faecalis DAPTO
           512]
 gi|311290741|gb|EFQ69297.1| methionine biosynthesis protein MetW [Enterococcus faecalis DAPTO
           516]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|300860184|ref|ZP_07106271.1| methionine biosynthesis protein MetW [Enterococcus faecalis TUSoD
           Ef11]
 gi|300849223|gb|EFK76973.1| methionine biosynthesis protein MetW [Enterococcus faecalis TUSoD
           Ef11]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|229549536|ref|ZP_04438261.1| group 2 family glycosyl transferase [Enterococcus faecalis ATCC
           29200]
 gi|255972239|ref|ZP_05422825.1| glycosyl transferase, group 2 family protein [Enterococcus faecalis
           T1]
 gi|312953327|ref|ZP_07772169.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0102]
 gi|229305354|gb|EEN71350.1| group 2 family glycosyl transferase [Enterococcus faecalis ATCC
           29200]
 gi|255963257|gb|EET95733.1| glycosyl transferase, group 2 family protein [Enterococcus faecalis
           T1]
 gi|310628715|gb|EFQ11998.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0102]
 gi|315154447|gb|EFT98463.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0031]
 gi|315160183|gb|EFU04200.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0312]
 gi|327535578|gb|AEA94412.1| group 2 glycosyl transferase [Enterococcus faecalis OG1RF]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|150007363|ref|YP_001302106.1| putative methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|255014006|ref|ZP_05286132.1| putative methyltransferase [Bacteroides sp. 2_1_7]
 gi|256839654|ref|ZP_05545163.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298375351|ref|ZP_06985308.1| UbiE/COQ5 methyltransferase [Bacteroides sp. 3_1_19]
 gi|149935787|gb|ABR42484.1| putative methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|256738584|gb|EEU51909.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267851|gb|EFI09507.1| UbiE/COQ5 methyltransferase [Bacteroides sp. 3_1_19]
          Length = 193

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D   ++ I + +       ++++G G G L   LL    R+++ I+   Q     +   
Sbjct: 21  HDPGKIRTILDRTNLRQNARILDVGCGTGILESYLLPYEPRQIVAIDIAGQMIEKARMKY 80

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
             HP  +E +Q+DA+  + + F      I + +  P+ +    L   +S    P
Sbjct: 81  PDHP-LIEFLQEDAMSYEGKGF----DYIILYSAYPHFMRPERLIEHMSGLLAP 129


>gi|83718418|ref|YP_442165.1| hypothetical protein BTH_I1627 [Burkholderia thailandensis E264]
 gi|83652243|gb|ABC36306.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 228

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             D   VIE+GAG G  T+ LL+ G  A +++++E D  F   L+         L ++  
Sbjct: 53  PGDSARVIELGAGTGVFTRELLSRGVAADRLVLVEADPAFAATLRRRFPA----LRVMNM 108

Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126
           DA ++      F  +    +++ LP
Sbjct: 109 DAAELGITHGLFGDARASTVVSGLP 133


>gi|85708290|ref|ZP_01039356.1| UbiE/COQ5 methyltransferase [Erythrobacter sp. NAP1]
 gi|85689824|gb|EAQ29827.1| UbiE/COQ5 methyltransferase [Erythrobacter sp. NAP1]
          Length = 228

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPN 95
           + I E +  + G  VI++G G G L + L+        I +E D     I +       +
Sbjct: 41  RAIVEEAVLVPGDKVIDVGCGTGTLLRALMASCPEAGFIGVEPDPAALAIAQRKFGAGVD 100

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            +       L  D  +      P +I+++L
Sbjct: 101 MVRWHNG-FL--DSLELSGGWQPDKIVSSL 127


>gi|312901440|ref|ZP_07760715.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0470]
 gi|311291429|gb|EFQ69985.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0470]
 gi|315166510|gb|EFU10527.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX1341]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|257419738|ref|ZP_05596732.1| glycosyl transferase [Enterococcus faecalis T11]
 gi|257161566|gb|EEU91526.1| glycosyl transferase [Enterococcus faecalis T11]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|29376689|ref|NP_815843.1| glycosyl transferase, group 2 family protein [Enterococcus faecalis
           V583]
 gi|227520239|ref|ZP_03950288.1| group 2 family glycosyl transferase [Enterococcus faecalis TX0104]
 gi|227555328|ref|ZP_03985375.1| family 2 glycosyl transferase [Enterococcus faecalis HH22]
 gi|29344153|gb|AAO81913.1| glycosyl transferase, group 2 family protein [Enterococcus faecalis
           V583]
 gi|227072318|gb|EEI10281.1| group 2 family glycosyl transferase [Enterococcus faecalis TX0104]
 gi|227175539|gb|EEI56511.1| family 2 glycosyl transferase [Enterococcus faecalis HH22]
 gi|315575171|gb|EFU87362.1| methionine biosynthesis protein MetW [Enterococcus faecalis
           TX0309B]
 gi|315582598|gb|EFU94789.1| methionine biosynthesis protein MetW [Enterococcus faecalis
           TX0309A]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|315171515|gb|EFU15532.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX1342]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|315146317|gb|EFT90333.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX4244]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|257422101|ref|ZP_05599091.1| glycosyl transferase [Enterococcus faecalis X98]
 gi|257163925|gb|EEU93885.1| glycosyl transferase [Enterococcus faecalis X98]
 gi|315157135|gb|EFU01152.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX0043]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|257087316|ref|ZP_05581677.1| glycosyl transferase [Enterococcus faecalis D6]
 gi|256995346|gb|EEU82648.1| glycosyl transferase [Enterococcus faecalis D6]
 gi|315025866|gb|EFT37798.1| methionine biosynthesis protein MetW [Enterococcus faecalis TX2137]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|134095875|ref|YP_001100950.1| protein-L-isoaspartate O-methyltransferase [Herminiimonas
           arsenicoxydans]
 gi|133739778|emb|CAL62829.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 218

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-N 95
            +I +         V+EIGAG G +   LL   AR V  +E + +   + +   + +  +
Sbjct: 67  ARILQELALKKHENVLEIGAGSGYM-AALLAYKARHVTTLEIEPELKALAQQNLANYGVS 125

Query: 96  RLEIIQDD 103
            +++++ D
Sbjct: 126 NVDVVEAD 133


>gi|323481250|gb|ADX80689.1| multimodular AdoMet_Mtase methyl/glycosyl transferase
           GT2_RfbC_Mx_like protein [Enterococcus faecalis 62]
          Length = 1047

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDKSTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|300692286|ref|YP_003753281.1| protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           PSI07]
 gi|299079346|emb|CBJ52018.1| Protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           PSI07]
          Length = 246

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  ++ +         V+E+GAG G +  +L   G R V  ++   +    
Sbjct: 87  GQNMLP-PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RHVTTVDIASELVAF 144

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +D  +++    +++ + DA +      +++   I +  ++P
Sbjct: 145 ARDNLARNGVTNVDVAEGDAAQGWGNSLYDV---ICVSGSVP 183


>gi|3608402|gb|AAC35928.1| Orfde14 [Enterococcus faecalis OG1RF]
          Length = 393

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 31  LDLNI-LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            D +  + KI   +   +   V+E G G G +T  L+     +V ++E D++ +  +   
Sbjct: 9   TDESTSVGKIV--AQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELYDHVSQF 66

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           S+           +  + D+ ++F   +   I+
Sbjct: 67  STDA------FYGNIDENDWVEYFAGKTFDYIV 93


>gi|206560044|ref|YP_002230808.1| putative methyltransferase [Burkholderia cenocepacia J2315]
 gi|198036085|emb|CAR51980.1| putative methyltransferase [Burkholderia cenocepacia J2315]
          Length = 254

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQH 93
           L  +  +    DG +VIE+GAG G  T+ LL  G    +++++E D  F   L+      
Sbjct: 30  LAALITAHVPRDGASVIELGAGTGVFTRALLARGVASDRLVLVEADPAFANALRHQFPA- 88

Query: 94  PNRLEIIQDDALKVDFE-KFFNISSPIRIIANLP 126
              L ++Q DA ++     FF       I++ LP
Sbjct: 89  ---LRVMQMDAAQLGMTGDFFGGERAHAIVSGLP 119


>gi|156938115|ref|YP_001435911.1| RNA methylase [Ignicoccus hospitalis KIN4/I]
 gi|156567099|gb|ABU82504.1| putative RNA methylase [Ignicoccus hospitalis KIN4/I]
          Length = 169

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           ++ +K+ E +G      V ++G+G G +    +   GA+K + +E       I ++  S+
Sbjct: 23  HVARKMLELAGVGPDDVVYDLGSGDGRIPILAVEEFGAKKAVGVEIRNDLVQIAREEVSK 82

Query: 93  --HPNRLEIIQDDALKVDFEK 111
                R+EI++ D L+V   +
Sbjct: 83  RGLEGRVEIVRGDVLEVPVHE 103


>gi|293553229|ref|ZP_06673866.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E1039]
 gi|291602639|gb|EFF32854.1| glycosyl transferase, group 2 family protein [Enterococcus
          faecium E1039]
          Length = 528

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          KI  ++    G  V+E G G G LT+ L+     +V ++E D++ F  +   +  
Sbjct: 17 KI--AAQIKPGSKVLEFGPGNGRLTKHLIGAKQCEVSIVELDKELFDFVSKFAQD 69


>gi|70606269|ref|YP_255139.1| protein-L-isoaspartate O-methyltransferase [Sulfolobus
           acidocaldarius DSM 639]
 gi|68566917|gb|AAY79846.1| protein-L-isoaspartate O-methyltransferase [Sulfolobus
           acidocaldarius DSM 639]
          Length = 216

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 5/149 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNR 96
           K+ +         V+EIG G G  T ++   +GA  V  IE D++ + + K+   ++   
Sbjct: 69  KMVDLLELKKSDKVLEIGTGSGYYTALMAEIVGAENVYTIEFDEEAYNLAKNNLKEYHG- 127

Query: 97  LEIIQDDA-LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--WISADTWPPFWESLTLL 153
           + +I  D  L       ++           PY +  ++      I   +     + L  +
Sbjct: 128 IHLIFGDGSLGYISGSPYDKIIVWASSPTFPYALYQQMKEKGIMIVPISDNEKRQGLYRI 187

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           ++ E G  +  +    ++ RL  L G+  
Sbjct: 188 YKGETGSPVITKVMDVYFTRLRGLCGFWY 216


>gi|308070883|ref|YP_003872488.1| phospholipid N-methyltransferase [Paenibacillus polymyxa E681]
 gi|305860162|gb|ADM71950.1| Phospholipid N-methyltransferase [Paenibacillus polymyxa E681]
          Length = 196

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 30/149 (20%)

Query: 27  QNFLLDLN-----------ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKV 73
           Q FL +             +  KI ES    +   V E+G+G G +T+ +     G+ +V
Sbjct: 16  QGFLTNPQRVGSVIPSSRFLAAKIVESVPWNEVKAVAELGSGTGAITRFMKPHLTGSTRV 75

Query: 74  IVIEKDQQFFPILKDI---SSQHPNRLEII----QDDALKVDFEKFFNISSPIRIIANLP 126
           ++ E+D++    LK      + H N  ++I    QDD  ++D            I     
Sbjct: 76  LLFERDKKMRATLKTEYPDFACHSNACQLIKKLNQDDIGQLDC----------IISGLPF 125

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           +N  + +    ++        E + + +Q
Sbjct: 126 FNFTSEMREALLNQIIKALKPEGIFVAYQ 154


>gi|296166960|ref|ZP_06849376.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897699|gb|EFG77289.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 190

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G   +EIG G G   + L    A  +  +E D      L+     + +R  +I  D
Sbjct: 35  GAHTLEIGPGYGATLRALAARTA-SLTAVEVDAAMADRLRRR---YGDRATVIHGD 86


>gi|325919645|ref|ZP_08181654.1| 16S rRNA m(2)G-966 methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325549893|gb|EGD20738.1| 16S rRNA m(2)G-966 methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 253

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L++  ++    ++++++Q+D
Sbjct: 101 LPGARVLDLFAGSGALGLEAVSRGAAHATLIERDPGLVQRLREHVARLDAADQVQVLQED 160

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           AL+   E+     + I  +           +   + A   P  W
Sbjct: 161 ALR-WLERAPAAQASIVFVDPPFAAGLWPSVLERLPAQLTPDAW 203


>gi|298293975|ref|YP_003695914.1| ribosomal RNA adenine methylase transferase [Starkeya novella DSM
           506]
 gi|296930486|gb|ADH91295.1| ribosomal RNA adenine methylase transferase [Starkeya novella DSM
           506]
          Length = 216

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 7/95 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A      D   VIE+G G G +T  L+  G    ++++IE + +F  +L+     
Sbjct: 46  LARTMANYVDPNDDGPVIELGPGTGPVTSALVARGIAPERLVLIEYNPEFCTLLRMRFPG 105

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSP-IRIIANLP 126
                 +IQ DA  +       +  P +  +++LP
Sbjct: 106 A----TVIQGDAYNMAATLDARLDKPAVATVSSLP 136


>gi|218682305|ref|ZP_03529906.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium
           etli CIAT 894]
          Length = 120

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           FL++ + L K+ + +       V+E+G G G  T  LL++ A  VI +E D+     
Sbjct: 65  FLMEASPLAKLLQLAAVTKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDEALAAE 120


>gi|294624503|ref|ZP_06703184.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601196|gb|EFF45252.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 207

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L++  ++    N+++++Q+D
Sbjct: 55  LPGARVLDLFAGSGALGLEAVSRGAAHATLIERDPGLVQRLREHVTRLDAANQVQVLQED 114

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           AL+   E+     + I  +           +   + A      W
Sbjct: 115 ALR-WLERAPAALADIVFVDPPFAAGLWPAVLECLPAHVAADAW 157


>gi|221067155|ref|ZP_03543260.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Comamonas
           testosteroni KF-1]
 gi|220712178|gb|EED67546.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Comamonas
           testosteroni KF-1]
          Length = 236

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
             I  ++ +         V+EIG G G +   LL   A++V+ +E D +   + ++
Sbjct: 83  PKIEARMLQDVKIKPTDRVLEIGTGSGYM-AALLAAQAKEVVTLEIDPELAEMARE 137


>gi|312128530|ref|YP_003993404.1| methyltransferase type 11 [Caldicellulosiruptor hydrothermalis 108]
 gi|311778549|gb|ADQ08035.1| Methyltransferase type 11 [Caldicellulosiruptor hydrothermalis 108]
          Length = 196

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88
            + + ++ I +  G  +G  V+++G G G L + L        K+  ++  ++   I K 
Sbjct: 21  HNKDKIEAILDMIGIKEGSCVLDVGCGTGVLVEYLQKRTGQKGKIFCVDISEKMIEIAKS 80

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFN 114
                 N +  I DD   + F+ +F+
Sbjct: 81  KYKNFSN-VTFINDDVNNLKFKDYFD 105


>gi|163753256|ref|ZP_02160380.1| Ribosomal RNA adenine dimethylase [Kordia algicida OT-1]
 gi|161326988|gb|EDP98313.1| Ribosomal RNA adenine dimethylase [Kordia algicida OT-1]
          Length = 184

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +++ I +   I P             + ++I  +        ++E G G G +T+ +L  
Sbjct: 10  AIRDIKTSGTIFPSSRF---------LSRRIVNNIDFSSVKVIVEFGPGNGIITKEILKR 60

Query: 69  --GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
                K+I  E + +FF  L+ I        ++  +D   V  +  ++ +  I I +   
Sbjct: 61  IQPHTKLIAFEINDKFFQSLEKIKHSQFIIEKVSAEDVASVLKKHGYDKADCI-ISSLPL 119

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
            NI T +    +          SL + +Q  +      ++      RLS           
Sbjct: 120 TNIPTEISDKILDNAYDAMIDNSLFVQYQYSLTYYKKLKEVFNDNVRLSFE--------- 170

Query: 187 MFDISP 192
            F+I P
Sbjct: 171 AFNIPP 176


>gi|29826663|ref|NP_821297.1| O-methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29603759|dbj|BAC67832.1| putative O-methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 374

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 12/121 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++ + +G+ DG  V+EIG G G  T +L    G   V  +E D        D   
Sbjct: 97  PSLIVRMLDLAGTRDGDNVLEIGTGTGYSTAILCERLGDEHVFSVEYDPGLAAAAADHIH 156

Query: 92  QHPNRLEIIQDDAL--KVDFEKFFNISSPIRIIANLPY---------NIGTRLLFNWISA 140
                  +   D L    D  ++  I +   +    P           I T +    +++
Sbjct: 157 AAGYHPTLNTGDGLAGHKDGAEYDAIIATCAVRHIPPTWLYQVRAGGTITTTISGWMLAS 216

Query: 141 D 141
            
Sbjct: 217 G 217


>gi|264678418|ref|YP_003278325.1| protein-L-isoaspartate(D-aspartate) [Comamonas testosteroni CNB-2]
 gi|299532266|ref|ZP_07045660.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Comamonas
           testosteroni S44]
 gi|262208931|gb|ACY33029.1| protein-L-isoaspartate(D-aspartate) [Comamonas testosteroni CNB-2]
 gi|298719928|gb|EFI60891.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Comamonas
           testosteroni S44]
          Length = 236

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
             I  ++ +         V+EIG G G +   LL   A++V+ +E D +   + ++
Sbjct: 83  PKIEARMLQDVKIKPTDRVLEIGTGSGYM-AALLAAQAKEVVTLEIDPELAEMARE 137


>gi|270157458|ref|ZP_06186115.1| protein-L-isoaspartate-O-methyltransferase [Legionella longbeachae
           D-4968]
 gi|289164151|ref|YP_003454289.1| protein-L-isoaspartate-O-methyltransferase [Legionella longbeachae
           NSW150]
 gi|269989483|gb|EEZ95737.1| protein-L-isoaspartate-O-methyltransferase [Legionella longbeachae
           D-4968]
 gi|288857324|emb|CBJ11151.1| protein-L-isoaspartate-O-methyltransferase [Legionella longbeachae
           NSW150]
          Length = 217

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-FPILKDISSQHPNRL 97
           I ++       TV+E+G G G  T  LL+  ++KVI I+    F     K + + H N +
Sbjct: 69  ILQALNLQGHETVLEVGTGSGFFT-ALLSKLSKKVISIDYYADFTVQAEKKLKAHHCNNV 127

Query: 98  EIIQDDALKVDFEK 111
           E+I  DA +   EK
Sbjct: 128 ELITGDACRGWLEK 141


>gi|317486393|ref|ZP_07945221.1| methyltransferase domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922382|gb|EFV43640.1| methyltransferase domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 170

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A  +       V+E+GAG G +T+ LL  G   R+++V+E+      +L++   Q
Sbjct: 9   LARSMAAFAPRKGDGLVVELGAGTGTVTRQLLDAGIAPRRLVVVEQSPVMVSLLRERFPQ 68

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
               L I++ DA +              I+++LP
Sbjct: 69  ----LAILEADA-RWLAGCLPRDRQVDCIVSSLP 97


>gi|294634102|ref|ZP_06712657.1| methyltransferase [Streptomyces sp. e14]
 gi|292829916|gb|EFF88270.1| methyltransferase [Streptomyces sp. e14]
          Length = 257

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
          A ++G   G  V+EIG G G LT  L   G R +  +E+
Sbjct: 29 ARTAGLGPGSRVLEIGPGTGQLTVPLAEFGCR-LTAVER 66


>gi|152973540|ref|YP_001338591.1| hypothetical protein KPN_pKPN3p05982 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330005929|ref|ZP_08305431.1| methyltransferase small domain protein [Klebsiella sp. MS 92-3]
 gi|150958332|gb|ABR80361.1| Hypothetical protein KPN_pKPN3p05982 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|328536045|gb|EGF62448.1| methyltransferase small domain protein [Klebsiella sp. MS 92-3]
          Length = 187

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95
           +++ E +   +   ++E  AG G + Q +     R K   +E        L      H  
Sbjct: 40  RRLVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVE----LHAGLARHLQAHFP 95

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            + I   D L+   E+ +      RII N P++ G  +
Sbjct: 96  EVRIWCGDFLEYHPERRY-----TRIIMNPPFHRGDDI 128


>gi|332529753|ref|ZP_08405707.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Hylemonella gracilis ATCC 19624]
 gi|332040774|gb|EGI77146.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Hylemonella gracilis ATCC 19624]
          Length = 226

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  +I +   +     V+ +GAG G L   LL   +++VI +E D +   + +    +
Sbjct: 70  PRVQARIVQDVAAQPQDKVLLVGAGSGYL-AALLAKRSKQVIALEIDAELAALARANLQK 128

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
                 I      + D  +     +P  +I
Sbjct: 129 AG----ITNAQVQQADGSQGAPAEAPFDVI 154


>gi|170731822|ref|YP_001763769.1| methyltransferase small [Burkholderia cenocepacia MC0-3]
 gi|169815064|gb|ACA89647.1| methyltransferase small [Burkholderia cenocepacia MC0-3]
          Length = 397

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +V+  ++D +     ++  ++  H  ++
Sbjct: 210 VARAPLQATSLAFDIGTGTGVLAAVLASRGVERVVATDQDPRALACARENVARLGHAGQV 269

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       ++ N P+
Sbjct: 270 EIVEAD--------LFPAGRAPLVVCNPPW 291


>gi|312882492|ref|ZP_07742233.1| hypothetical protein VIBC2010_18459 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369892|gb|EFP97403.1| hypothetical protein VIBC2010_18459 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 397

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           G G L ++L +   +KV  +E D +     ++++ ++   +E +Q DAL        N  
Sbjct: 131 GKGFLGRILASQTRQKVTSLEYDAELCQAGQELAKKYSLPMEFVQGDALSEQCLDLMNPG 190

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
                +     ++   L+     A+              KE   +  ++       RL
Sbjct: 191 HHAVALHAC-GDLHVSLIRQATLANIPAISISPCCYHLSKETSYQALSKPGKKSQLRL 247


>gi|107027131|ref|YP_624642.1| methyltransferase type 12 [Burkholderia cenocepacia AU 1054]
 gi|116691476|ref|YP_837009.1| methyltransferase type 12 [Burkholderia cenocepacia HI2424]
 gi|170736520|ref|YP_001777780.1| methyltransferase type 12 [Burkholderia cenocepacia MC0-3]
 gi|105896505|gb|ABF79669.1| Methyltransferase type 12 [Burkholderia cenocepacia AU 1054]
 gi|116649476|gb|ABK10116.1| Methyltransferase type 12 [Burkholderia cenocepacia HI2424]
 gi|169818708|gb|ACA93290.1| Methyltransferase type 12 [Burkholderia cenocepacia MC0-3]
          Length = 196

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             ++ +++A++    DG  V+E+G G G +T  LL  G   R+++V+E+   F   L+  
Sbjct: 31  SRHLAREMADAVPDGDG-LVVELGGGTGAITAALLERGVAPRRLVVVERSPAFVQHLRRR 89

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
                  + I+  DA ++  E+     + +  I + 
Sbjct: 90  FPG----ISIVSGDARRL--ERLLPPGATVDAIVSC 119


>gi|282865472|ref|ZP_06274523.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. ACTE]
 gi|282559516|gb|EFB65067.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. ACTE]
          Length = 389

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++ +     +   V+EIG G G    +L    G   V+ +E D       ++   
Sbjct: 103 PSVVFRMLDVLTVDEDSRVLEIGTGTGWNAALLAHRTGDGHVVSVEVDAAVADRAREALH 162

Query: 92  QHPNRLEIIQDDAL 105
           +    +E++  D L
Sbjct: 163 RFGALVEVVHGDGL 176


>gi|296285096|ref|ZP_06863094.1| putative methyltransferase [Citromicrobium bathyomarinum JL354]
          Length = 234

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPN 95
           +KI E    + G  VI++G+G G L + L+T      +I +E DQ+   + +       +
Sbjct: 47  QKIVEELHLVPGDRVIDVGSGTGTLLKALMTDCPEAGLIGVEPDQEALALARRKFGAGAD 106

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            ++      L+    +      P +I+++L
Sbjct: 107 LVKWHNG-FLE--SLELPAGWQPNKIVSSL 133


>gi|167519615|ref|XP_001744147.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777233|gb|EDQ90850.1| predicted protein [Monosiga brevicollis MX1]
          Length = 359

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 11/129 (8%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEI 99
           +        V+EIG G G L  +    GAR V  IE ++    + + I S     +R+ +
Sbjct: 69  AEQIQPSDIVLEIGTGSGLLAMLAAKAGARHVYAIEANRHMAQLAQHIISVNGLADRITV 128

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I   + +V  E      +   +         + +L   +  ++   +         K   
Sbjct: 129 INALSTEVTVEHLGGQRADALV---------SEILGTLLLGESALQYISDARERLLKPDA 179

Query: 160 ERITAQKNS 168
             I A    
Sbjct: 180 RIIPAGGRQ 188


>gi|304435944|gb|ADM33801.1| erythromycin ribosome methyltransferase Erm41 [Mycobacterium
          abscessus]
          Length = 78

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
          L D +   +I   SG   G  V+++GAG G LT  L+  GAR V+ +E        L+  
Sbjct: 15 LTD-DWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGAR-VLAVELHPGRARHLRSR 72

Query: 90 SSQHP 94
           ++  
Sbjct: 73 FAEED 77


>gi|167767379|ref|ZP_02439432.1| hypothetical protein CLOSS21_01898 [Clostridium sp. SS2/1]
 gi|317497461|ref|ZP_07955781.1| ribosomal protein L11 methyltransferase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711354|gb|EDS21933.1| hypothetical protein CLOSS21_01898 [Clostridium sp. SS2/1]
 gi|291559324|emb|CBL38124.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [butyrate-producing bacterium SSC/2]
 gi|316895247|gb|EFV17409.1| ribosomal protein L11 methyltransferase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 319

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQ 101
             +   ++++G G G L+ + L LGA   ++ + D       ++    +    ++ E+ Q
Sbjct: 172 IKEDTKILDVGCGSGILSIIGLKLGAGHAVLTDIDPHAISASEENFEVNHISKDQFEVYQ 231

Query: 102 DDALKVDFEKFFNISSPI--RIIANLPYNIGTRL--LFNWISADTWPPFWESLTLLFQKE 157
            + L  D E   ++ S     ++AN+  ++ + L  + +   A+        +    +KE
Sbjct: 232 GNVLD-DKEFAASLGSKCYPVVVANILADVISPLIEIVDQFLAEDGVFVISGIIDTKEKE 290

Query: 158 VGERITA 164
           + +++ A
Sbjct: 291 IADKLNA 297


>gi|20804044|emb|CAD31621.1| HYPOTHETICAL PROTEIN [Mesorhizobium loti R7A]
          Length = 226

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISSQHPNRLEIIQDD 103
            ++G +++EIG G G     L  LGA  ++  + D +     L++ +      +E+I+ D
Sbjct: 54  PVEGKSILEIGCGFGLPGLYLAKLGAASLVACDIDPKAVANALENAARNGIKNVEVIESD 113

Query: 104 ALKVDFEKFFNISSPIRIIANLPYN 128
                    F    P R    + +N
Sbjct: 114 I--------FTNVPPHRKFDFIFWN 130


>gi|222098547|ref|YP_002532605.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           Q1]
 gi|221242606|gb|ACM15316.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           Q1]
          Length = 192

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 16/135 (11%)

Query: 34  NILKK-IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDIS 90
           NIL K + ++        ++E+G G G+ T+ ++    ++   I+IE ++ FF  L+   
Sbjct: 25  NILAKAMVDAIDFDVAKCIVELGPGTGSFTKEIMKRKKKRTTFILIEINEVFFKKLQKQY 84

Query: 91  SQHPNRLEIIQDDA---------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               + + +I   A         L+++   +     P     +LP  + +R+L N + + 
Sbjct: 85  EDDASIV-VIHGSAENIQKYVEELQINGVDYVLSGLPF---TSLPKEVSSRILNNVMESL 140

Query: 142 TWPPFWESLTLLFQK 156
                + +      K
Sbjct: 141 RENGKFITFQYSLVK 155


>gi|167837453|ref|ZP_02464336.1| hypothetical protein Bpse38_13275 [Burkholderia thailandensis
           MSMB43]
          Length = 214

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +   VIE+GAG G  T+ LL+ G  A +++++E D  F   L+         L ++  
Sbjct: 39  PGESARVIELGAGTGVFTRELLSRGVAAERLVLVEADPAFAATLRRRFPA----LRVMNM 94

Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126
           DA ++      F  +    +++ LP
Sbjct: 95  DAAELGITHGLFGDARASTVVSGLP 119


>gi|148262860|ref|YP_001229566.1| methyltransferase type 11 [Geobacter uraniireducens Rf4]
 gi|146396360|gb|ABQ24993.1| Methyltransferase type 11 [Geobacter uraniireducens Rf4]
          Length = 267

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L+  N  K++ E         ++++G G GNLT  L  + + +V+ I+  +      + +
Sbjct: 16  LVQANAGKQLIELLEIAPDTDILDVGCGTGNLTAELREITSGRVVAIDPAEGMIRQAQAL 75

Query: 90  SSQHPNRLEIIQDDALKVDFE 110
                    +   DAL  D E
Sbjct: 76  YGSQDIDFRMADGDALPFDNE 96


>gi|108763884|ref|YP_629284.1| putative pristinamycin I synthase 3 [Myxococcus xanthus DK 1622]
 gi|108467764|gb|ABF92949.1| putative pristinamycin I synthase 3 [Myxococcus xanthus DK 1622]
          Length = 448

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V+EIGAG G +T+ L   G   +I +E D+ +   LK++    P+ +     D    
Sbjct: 242 GRRVLEIGAGIGTITREL-ESGLELLIALEVDRFYVDRLKNLFRGKPH-IRPYLSDVALA 299

Query: 108 DFEKFFNISSPIRIIANLPYNI 129
           D+E          +++N+  +I
Sbjct: 300 DWESLKTERLDTIVLSNVLEHI 321


>gi|284044885|ref|YP_003395225.1| methyltransferase type 11 [Conexibacter woesei DSM 14684]
 gi|283949106|gb|ADB51850.1| Methyltransferase type 11 [Conexibacter woesei DSM 14684]
          Length = 255

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPN 95
           + + +        TV+++G G G +T+ LL    A +V+ ++         +   +    
Sbjct: 23  RAVLDRLELRGEETVLDLGCGTGRITRALLERLPAGRVVAVDGSAAMVERARAELAGAGT 82

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
           R  +IQ D + +D     ++  P          I T   F+WI+   
Sbjct: 83  RATVIQSDLVALDLAAHPDVPRPADAA------ISTA-TFHWIADHD 122


>gi|254249230|ref|ZP_04942550.1| Phospholipid N-methyltransferase [Burkholderia cenocepacia PC184]
 gi|124875731|gb|EAY65721.1| Phospholipid N-methyltransferase [Burkholderia cenocepacia PC184]
          Length = 196

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             ++ +++A++    DG  V+E+G G G +T  LL  G   R+++V+E+   F   L+  
Sbjct: 31  SRHLAREMADAVPDGDG-LVVELGGGTGAITAALLERGVAPRRLVVVERSPAFVQHLRRR 89

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
                  + I+  DA ++  E+     + +  I + 
Sbjct: 90  FPG----ISIVSGDARRL--ERLLPPGATVDAIVSC 119


>gi|229020083|ref|ZP_04176864.1| RRNA adenine dimethylase [Bacillus cereus AH1273]
 gi|229026312|ref|ZP_04182671.1| RRNA adenine dimethylase [Bacillus cereus AH1272]
 gi|228735028|gb|EEL85664.1| RRNA adenine dimethylase [Bacillus cereus AH1272]
 gi|228741193|gb|EEL91410.1| RRNA adenine dimethylase [Bacillus cereus AH1273]
          Length = 200

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 16/141 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+           ++E+G G G  T+ ++    ++ I   IE ++ F   L      
Sbjct: 35  LAKKMVNIIDFNRAKCIVELGPGTGVFTKEIMKRKKKETIFLLIEINEVFCKELTRKFKN 94

Query: 93  HPNRLEIIQDDA---------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA-DT 142
             N + +I   A         L +D+  +     P     +LP  +  R+L N + A   
Sbjct: 95  EQN-VIVIHGSAENIKKYMKELNIDYIDYVLSGLPF---TSLPEEVSKRILNNVMEAIHE 150

Query: 143 WPPFWESLTLLFQKEVGERIT 163
              F      L +K   +   
Sbjct: 151 NGEFITFQYSLVKKGFIQHFF 171


>gi|163858642|ref|YP_001632940.1| putative secreted protein [Bordetella petrii DSM 12804]
 gi|163262370|emb|CAP44673.1| putative secreted protein [Bordetella petrii]
          Length = 240

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISS 91
            +   I    G   G   +E+GAG G  T+ L+  G    ++ ++E D QF   L+    
Sbjct: 70  RLAAAITRGIGPASGPC-LELGAGTGAFTRALVARGLDPHQLALVEMDAQFARQLRHDFP 128

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
                  + Q DA K+     F        +  LP
Sbjct: 129 GAY----VHQGDAAKLAGLPLFLDGLAGAAVCGLP 159


>gi|223936074|ref|ZP_03627988.1| Methyltransferase type 11 [bacterium Ellin514]
 gi|223895296|gb|EEF61743.1| Methyltransferase type 11 [bacterium Ellin514]
          Length = 192

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             N+   +A           +E+G G G +TQ L+  G    ++I IE+  +    L+  
Sbjct: 31  SKNLAAAMARWLPEDSNTFALELGPGTGVVTQALIERGLPEDRLIAIERSPKMADHLRSR 90

Query: 90  SSQHPNRLEIIQDDALKVD 108
                 R +II  DA ++D
Sbjct: 91  FP----RAKIITGDAFQLD 105


>gi|310826525|ref|YP_003958882.1| ribosomal protein L11 methyltransferase [Eubacterium limosum
           KIST612]
 gi|308738259|gb|ADO35919.1| ribosomal protein L11 methyltransferase [Eubacterium limosum
           KIST612]
          Length = 314

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                 V++IG G G L+ +   LG R VI ++ D     + ++    +   +++EI + 
Sbjct: 172 IRPDDMVLDIGCGTGILSIIAGELGCRHVIGVDFDPVAVKVARENIALNHMEDKIEIREG 231

Query: 103 DALKVDFEK 111
           + L V  E 
Sbjct: 232 NLLDVIAED 240


>gi|269929255|ref|YP_003321576.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269788612|gb|ACZ40754.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 258

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +      G  ++++G G G+LT+ +   GA  V  I++D       +      P   E+
Sbjct: 32  IDLLAPQPGERILDLGCGTGHLTRAIADHGAH-VTSIDRDPAMIAHARANYPDLP--FEV 88

Query: 100 IQDDALKVDFEKFFN 114
              DA  +  E  F+
Sbjct: 89  --GDAAHLAPEHPFD 101


>gi|167570801|ref|ZP_02363675.1| hypothetical protein BoklC_13215 [Burkholderia oklahomensis C6786]
          Length = 214

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +   VIE+GAG G  T+ LL+ G    +++++E D  F   L+         L ++  
Sbjct: 39  PSESALVIELGAGTGVFTRELLSRGVASDRLVLVEADPAFAATLRRRFPD----LRVMNM 94

Query: 103 DALKVDFEK-FFNISSPIRIIANLP 126
           DA ++   +  F  +    I++ LP
Sbjct: 95  DAAELGITRGLFGDARASAIVSGLP 119


>gi|255523845|ref|ZP_05390809.1| ribosomal RNA adenine dimethylase [Clostridium carboxidivorans P7]
 gi|255512407|gb|EET88683.1| ribosomal RNA adenine dimethylase [Clostridium carboxidivorans P7]
          Length = 185

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 5/133 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDI 89
              +  ++ E    L+   ++E G G G  T+ +L         IVIE +  F+ ILKD 
Sbjct: 24  SEKLAYRMVEDIDFLNASCIVEYGPGTGVFTEKILNRKKDSTIFIVIEYNVDFYKILKDK 83

Query: 90  SSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
                N   +I D A  LK   +K+        +      ++   +    +S        
Sbjct: 84  FKDKTN-FILINDSAENLKEYLDKYSIDKVDYIVSGLPFASLPHDMSRKILSVTKEILKD 142

Query: 148 ESLTLLFQKEVGE 160
           +   + FQ  + +
Sbjct: 143 KGEFITFQYTLFK 155


>gi|114327464|ref|YP_744621.1| phosphatidyl-N-methylethanolamine N-methyltransferase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315638|gb|ABI61698.1| phosphatidylethanolamine N-methyltransferase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 230

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
              + +++A          V+E+GAG G +++ LL  G    ++ V+E        L+  
Sbjct: 69  SPALCRRVAAQIRRNHDQIVLELGAGTGVISKALLESGIPPERLFVVEIVPDMAVHLRKA 128

Query: 90  SSQHPNRLEIIQDDA 104
                  +++I+ DA
Sbjct: 129 LPG----VQVIEGDA 139


>gi|239827814|ref|YP_002950438.1| methyltransferase type 11 [Geobacillus sp. WCH70]
 gi|259646854|sp|C5D4Y0|Y2477_GEOSW RecName: Full=Uncharacterized methyltransferase GWCH70_2477
 gi|239808107|gb|ACS25172.1| Methyltransferase type 11 [Geobacillus sp. WCH70]
          Length = 213

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I  +  S  G  V+E G G GNLT+ LL  G + V  IE      P+ K    +  ++
Sbjct: 35  EDILNTVASKAGSVVLEFGVGTGNLTKKLLEQG-KTVYGIEP---SEPMRKKAREKLGDK 90

Query: 97  LEIIQDDALKVDFEK 111
           + I+  D L+     
Sbjct: 91  VLIVDGDFLQFPLPP 105


>gi|84489411|ref|YP_447643.1| hypothetical protein Msp_0602 [Methanosphaera stadtmanae DSM 3091]
 gi|84372730|gb|ABC57000.1| conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091]
          Length = 225

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 17/128 (13%)

Query: 25  MGQNF--------------LLDLN-ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           + Q+F              L++ N +++ +  +    +   ++++G G GN+T+ +L   
Sbjct: 4   LKQHFNEVAENYDATIEKNLVNYNQMIEALINAIPDNESPRILDLGCGTGNITKKVLERF 63

Query: 70  AR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
              KV   +  ++   I K+  S + N +E +  D   +D    ++       + ++P N
Sbjct: 64  PNGKVTCFDLSEKMIEIAKEKLSDYDN-IEYVIGDFTIIDIIDKYDAIISSLALHHIPNN 122

Query: 129 IGTRLLFN 136
              + ++ 
Sbjct: 123 QAKKDMYQ 130


>gi|114330226|ref|YP_746448.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosomonas eutropha C91]
 gi|114307240|gb|ABI58483.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosomonas eutropha C91]
          Length = 218

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 12/141 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-N 95
            +I +         ++E+G G G +T +L  LGA  V  +E   +   + +     H   
Sbjct: 68  ARILQELNINKTDKILEVGTGTGYMTALLAKLGAH-VYSVEIVPELHAMARINLQAHDIT 126

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP--PFWESLTLL 153
            + + Q DA +   +       P  +I        T +L         P    +  +   
Sbjct: 127 NITLEQGDAARGWPD-----HGPYDVIVL---TASTPVLPEAFQQSLAPGGRLFAIVGEE 178

Query: 154 FQKEVGERITAQKNSPHYGRL 174
              E          +    RL
Sbjct: 179 PVMEAMLITCTTPGNYSSTRL 199


>gi|78065060|ref|YP_367829.1| methyltransferase [Burkholderia sp. 383]
 gi|77965805|gb|ABB07185.1| Methyltransferase [Burkholderia sp. 383]
          Length = 377

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +V+  ++D +     ++   +  H NR+
Sbjct: 190 VARAPLPATSLAFDIGTGTGVLAAVLASRGVERVVATDQDARALACARENVERLGHANRV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+++ D         F       ++ N P+
Sbjct: 250 EVVEAD--------LFPAGRAPLVVCNPPW 271


>gi|167563641|ref|ZP_02356557.1| hypothetical protein BoklE_13880 [Burkholderia oklahomensis EO147]
          Length = 214

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +   VIE+GAG G  T+ LL+ G    +++++E D  F   L+         L ++  
Sbjct: 39  PSESALVIELGAGTGVFTRELLSRGVASDRLVLVEADPAFAATLRRRFPD----LRVMNM 94

Query: 103 DALKVDFEK-FFNISSPIRIIANLP 126
           DA ++   +  F  +    I++ LP
Sbjct: 95  DAAELGITRGLFGDARANAIVSGLP 119


>gi|54296724|ref|YP_123093.1| hypothetical protein lpp0755 [Legionella pneumophila str. Paris]
 gi|53750509|emb|CAH11903.1| hypothetical protein lpp0755 [Legionella pneumophila str. Paris]
          Length = 216

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           I +S       TV+E+G G G +T  LL+   +KVI I+   +F    K    +H  N +
Sbjct: 68  ILQSLDLKGHETVLEVGTGTGFMT-ALLSKLCKKVISIDYYSEFTANAKRKLEEHNCNNV 126

Query: 98  EIIQDDALKVDFE 110
           E+I  DA +   E
Sbjct: 127 ELITGDACRGWLE 139


>gi|332711815|ref|ZP_08431746.1| amino acid adenylation domain protein [Lyngbya majuscula 3L]
 gi|332349793|gb|EGJ29402.1| amino acid adenylation domain protein [Lyngbya majuscula 3L]
          Length = 2303

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 45   SLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
             +    V+EIG G    L +     GA+K+  IE+DQ+   + K    +     ++EII 
Sbjct: 1026 LVKERVVVEIGTGKDAILARFCAKAGAKKIYAIERDQETSQLAKASVDKFGLSAQIEIIH 1085

Query: 102  DDALKVDFEKFFNIS 116
             DA+ V+  +  ++ 
Sbjct: 1086 GDAMTVNLPELADVC 1100


>gi|327193008|gb|EGE59922.1| phospholipid N-methyltransferase protein [Rhizobium etli CNPAF512]
          Length = 222

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93
           L +I  S  +     +IE+G G G  T+ LL  G  +  + +IE   +F   L+      
Sbjct: 34  LARIMTSEIAALDGPIIELGPGTGVFTRALLARGVSEADLTLIEYGPEFIDALQARFPAA 93

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISA 140
                ++Q DA  +     F       +I+ LP  ++  R + + ++ 
Sbjct: 94  ----RVLQMDAAHLAQADIFEDEPVGAVISGLPLLSMSPRKIASILAG 137


>gi|258651857|ref|YP_003201013.1| type 11 methyltransferase [Nakamurella multipartita DSM 44233]
 gi|258555082|gb|ACV78024.1| Methyltransferase type 11 [Nakamurella multipartita DSM 44233]
          Length = 264

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
          A+++G     TV+++GAGPG LT  L+   GA  V  I+  + F    +D       RL 
Sbjct: 35 ADAAGIGPDQTVLDVGAGPGGLTTELVARTGAGNVTAIDPSEPFVQACRDRHPGVDVRLG 94

Query: 99 I 99
          +
Sbjct: 95 V 95


>gi|241061258|ref|XP_002408109.1| secreted protein, putative [Ixodes scapularis]
 gi|215492378|gb|EEC02019.1| secreted protein, putative [Ixodes scapularis]
          Length = 319

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 74/229 (32%), Gaps = 31/229 (13%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF------------FPILK 87
             +   LD   + E   GPG LT+ LL  G   + V EK+  F               L 
Sbjct: 86  IGTMADLDDAVLFEANPGPGILTRCLLKSGVPHLRVFEKNPLFLKELELEVVEEDLLRLP 145

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP-- 145
            + +     +    D  L+    + +     + +IA+L        L   +         
Sbjct: 146 TLQACDSYGITSRVDALLRGLPPQAWKEPPCLLVIASLSRKRELSFLRFLLHVLPQRASL 205

Query: 146 ----FWESLTLLFQKEVGERITAQKNS--PHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                 + L  L + E      +  +     Y  +S+L        ++  +   +F P P
Sbjct: 206 FAIGRIDFLLFLTETEYTYLSASNSDHNFKKYRDVSILYKLFFDIEVLGKVPRALFLPLP 265

Query: 200 KVTST------VIHFIPHLNPIPC--CLESLKKITQEAFGKRRKTLRQS 240
           +          ++H  P  +        E L+++    F  R+  +++S
Sbjct: 266 QKEGKTPDQMHLVHLSPRSDLFDILDPPERLQELV---FFIRQNMVKRS 311


>gi|323527499|ref|YP_004229652.1| methyltransferase small [Burkholderia sp. CCGE1001]
 gi|323384501|gb|ADX56592.1| methyltransferase small [Burkholderia sp. CCGE1001]
          Length = 375

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK 111
           IG G G L  +L   G +K++  ++D +     ++  ++  +  ++E++Q D        
Sbjct: 202 IGTGTGVLAALLAKRGVKKIVATDQDPRALACARENLTRLGYEQQVEVVQAD-------- 253

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
            F       ++ N P+        + I    + P    + L F K + E ++       +
Sbjct: 254 LFPEGRAPLVVCNPPWVPARPA--SPIEYAVYDPE-SRMLLGFLKGLAEHLS--PGGEGW 308

Query: 172 GRLS 175
             LS
Sbjct: 309 LILS 312


>gi|256371699|ref|YP_003109523.1| tRNA methyltransferase complex GCD14 subunit [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008283|gb|ACU53850.1| tRNA methyltransferase complex GCD14 subunit [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 296

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--R 96
           I  +     G  V+E G G G LT  L  LGA  V+ +E+   F    +   +      R
Sbjct: 89  ILGALDVAPGQRVLECGVGSGGLTVWLARLGA-SVVAVERRPDFARRAEKNVAHLGGSER 147

Query: 97  LEIIQD 102
           + II  
Sbjct: 148 VSIIVG 153


>gi|27383277|ref|NP_774806.1| phospholipid N-methyltransferase [Bradyrhizobium japonicum USDA
           110]
 gi|27356451|dbj|BAC53431.1| bll8166 [Bradyrhizobium japonicum USDA 110]
          Length = 192

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           +   VIE+G G G  T+ LL  G R+  + ++E    F P+L+           ++  DA
Sbjct: 41  ETGPVIELGPGTGVFTRALLDRGVRQQNLTLVEYGSDFIPLLQQRFPGA----RVLWMDA 96

Query: 105 LKVDFEKFFNISSPIRIIANL 125
             +  EK F  +    +++ L
Sbjct: 97  AWLVREKLFEGAPVGAVVSGL 117


>gi|254176929|ref|ZP_04883586.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei ATCC
           10399]
 gi|160697970|gb|EDP87940.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei ATCC
           10399]
          Length = 228

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +   VIE+GAG G  T+ LL+ G  A +++++E D  F   L+         L ++  
Sbjct: 53  PGESARVIELGAGTGVFTRELLSRGVAADRLVLVEADPVFAATLRRRFPA----LRVMNV 108

Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126
           DA ++      F  +    +++ LP
Sbjct: 109 DAAELGITHGLFGDARASTVVSGLP 133


>gi|52840937|ref|YP_094736.1| protein-L-isoaspartate-O-methyltransferase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628048|gb|AAU26789.1| protein-L-isoaspartate-O-methyltransferase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 224

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           I +S       TV+E+G G G +T  LL+   +KVI I+   +F    K    +H  N +
Sbjct: 76  ILQSLDLKGHETVLEVGTGTGFMT-ALLSKLCKKVISIDYYSEFTANAKRKLEEHNCNNV 134

Query: 98  EIIQDDALKVDFE 110
           E+I  DA +   E
Sbjct: 135 ELITGDACRGWLE 147


>gi|219850908|ref|YP_002465340.1| Methyltransferase type 12 [Methanosphaerula palustris E1-9c]
 gi|219545167|gb|ACL15617.1| Methyltransferase type 12 [Methanosphaerula palustris E1-9c]
          Length = 275

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 30  LLDLNILKKIA---ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           +++    +KI    E++G   G+ V+E+GAG G +  +L          +E   +     
Sbjct: 47  IMNPVTPEKIVAVGEAAGLKPGMQVLEVGAGNGTVLAILAEKFGITGTGLEIRPEACAWA 106

Query: 87  KDISSQ--HPNRLEIIQDDALKVDFEKFFNI 115
           + + ++    +R+ II  DA     E  +++
Sbjct: 107 ERMLAKEGLGDRVRIICTDASTYTPEARYDL 137


>gi|206562249|ref|YP_002233012.1| putative phospholipid n-methyltransferase [Burkholderia cenocepacia
           J2315]
 gi|198038289|emb|CAR54244.1| putative phospholipid n-methyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 196

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             ++ +++A++    DG  V+E+G G G +T  LL  G   R+++V+E+   F   L+  
Sbjct: 31  SRHLAREMADAVPDGDG-LVVELGGGTGAITAALLERGVAPRRLVVVERSPAFVQHLRRR 89

Query: 90  SSQHPNRLEIIQDDA 104
                  + I+  DA
Sbjct: 90  FPG----ISIVSGDA 100


>gi|153871823|ref|ZP_02000894.1| Ribosomal RNA adenine methylase transferase [Beggiatoa sp. PS]
 gi|152071712|gb|EDN69107.1| Ribosomal RNA adenine methylase transferase [Beggiatoa sp. PS]
          Length = 233

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 32  DLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88
              + + IA       +   +IE+GAG G +T+ LL        ++ +E+       L  
Sbjct: 72  SPQLARAIASLVPLPTERGLIIELGAGTGVITEALLQRDIPPEHLVSLEQSASLADYLHK 131

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                   + +I+ DAL +      +      I++ LP+    R++ +
Sbjct: 132 RYPY----VRVIKGDALHLSDLLGSDSQRINAIVSGLPFRSLPRMVGH 175


>gi|326203008|ref|ZP_08192875.1| ribosomal RNA adenine methylase transferase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987085|gb|EGD47914.1| ribosomal RNA adenine methylase transferase [Clostridium
           papyrosolvens DSM 2782]
          Length = 255

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I + S        +EIG G G  T   L  G   +  +E  +      K+  ++  N 
Sbjct: 27  ENIIQFSNLDSNKNALEIGIGTGQATLPFLNTGCN-LTAVELGEDMAKFSKEKFAKFHN- 84

Query: 97  LEIIQDDA----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            ++I  D     LK D       ++    I   P  +G   +FN + +      +
Sbjct: 85  FDVINSDFESANLKKDDYDLIYSATAFHWI---PQEVGYTKIFNLLKSGGVMALF 136


>gi|158421785|ref|YP_001523077.1| phospholipid N-methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158328674|dbj|BAF86159.1| phospholipid N-methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 202

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + K +A          VIE+G G G +T+ L+  G    ++ +IE + +F  +L+     
Sbjct: 43  LAKMMASYLDPAIDGPVIELGPGTGPVTRALIARGFAPERLFLIEYNPEFCALLRKR--- 99

Query: 93  HPNRLEIIQDDA 104
           HP  + +IQ DA
Sbjct: 100 HPG-VTVIQGDA 110


>gi|218672362|ref|ZP_03522031.1| phospholipid N-methyltransferase protein [Rhizobium etli GR56]
          Length = 222

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93
           L +I  S  +     +IE+G G G  T+ LL  G  +  + +IE   +F   L+      
Sbjct: 34  LARIMTSEIAALDGPIIELGPGTGVFTRALLARGVSEADLTLIEYGPEFIDALQARFPAA 93

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISA 140
                ++Q DA  +     F       +I+ LP  ++  R + + ++ 
Sbjct: 94  ----RVLQMDAAHLAQADIFEDEPVGAVISGLPLLSMSPRKIASILAG 137


>gi|255683365|ref|NP_598745.2| hemK methyltransferase family member 1 [Mus musculus]
 gi|168984587|emb|CAQ12135.1| HemK methyltransferase family member 1 [Mus musculus]
          Length = 340

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLE 98
           +  + DG  ++E+G G G +T  LL+   + +V+ ++K++    +  + +   Q  +R+ 
Sbjct: 155 AVRAQDGPLILEVGCGSGAITLSLLSQLPKSRVVAVDKEEAAVSLTHENAQRLQLQDRIR 214

Query: 99  IIQDDAL-KVDFEKFFNISSPIRIIANLPY 127
           II  D   +         S    +++N PY
Sbjct: 215 IIHLDITSEGCCTHLLPWSPLDLVVSNPPY 244


>gi|120611480|ref|YP_971158.1| type 11 methyltransferase [Acidovorax citrulli AAC00-1]
 gi|120589944|gb|ABM33384.1| Methyltransferase type 11 [Acidovorax citrulli AAC00-1]
          Length = 236

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQ  L    +  ++ +         V+EIGAG G +   LL   A  V+ +E      
Sbjct: 75  RLGQCMLA-PRVEARLLQDLQVKPTDRVLEIGAGSGYM-AALLAHRAEHVVTLEIVPDLV 132

Query: 84  PILKD-ISSQHPNRLEIIQDD 103
              ++ + S   + + + Q D
Sbjct: 133 EFARENLLSAGIDNVAVRQGD 153


>gi|221213346|ref|ZP_03586321.1| putative methyltransferase [Burkholderia multivorans CGD1]
 gi|221166798|gb|EED99269.1| putative methyltransferase [Burkholderia multivorans CGD1]
          Length = 377

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +V+  ++D +     ++   +  +  R+
Sbjct: 190 VARAPLPATSVAFDIGTGTGVLAAVLASRGVERVVATDQDPRALACARENLERLGYAGRV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++++ D         F       ++ N P+
Sbjct: 250 DVVEAD--------LFPPGRAPLVVCNPPW 271


>gi|124385278|ref|YP_001026950.1| hypothetical protein BMA10229_A0961 [Burkholderia mallei NCTC
           10229]
 gi|254203938|ref|ZP_04910298.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei FMH]
 gi|254208918|ref|ZP_04915266.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei JHU]
 gi|254360027|ref|ZP_04976297.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei
           2002721280]
 gi|124293298|gb|ABN02567.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
 gi|147745450|gb|EDK52530.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei FMH]
 gi|147750794|gb|EDK57863.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei JHU]
 gi|148029267|gb|EDK87172.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei
           2002721280]
          Length = 228

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +   VIE+GAG G  T+ LL+ G  A +++++E D  F   L+         L ++  
Sbjct: 53  PGESARVIELGAGTGVFTRELLSRGVAADRLVLVEADPVFAATLRRRFPA----LRVMNV 108

Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126
           DA ++      F  +    +++ LP
Sbjct: 109 DAAELGITHGLFGDARASTVVSGLP 133


>gi|86356104|ref|YP_467996.1| phospholipid N-methyltransferase protein [Rhizobium etli CFN 42]
 gi|86280206|gb|ABC89269.1| phospholipid N-methyltransferase protein [Rhizobium etli CFN 42]
          Length = 222

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93
           L +I  S  +     +IE+G G G  T+ LL  G  +  + +IE   +F   L+      
Sbjct: 34  LARIMTSEIAALDGPIIELGPGTGVFTRALLARGISEADLTLIEYGPEFISALQARFPAA 93

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISA 140
                I+Q DA  +     F       +I+ LP  ++  R + + ++ 
Sbjct: 94  ----RILQMDAAHLAQADIFEGEPVGAVISGLPLLSMSPRKIASILAG 137


>gi|27363996|ref|NP_759524.1| putative O-methyltransferase [Vibrio vulnificus CMCP6]
 gi|81844774|sp|Q8DEQ3|TRMN6_VIBVU RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|27360113|gb|AAO09051.1| Predicted O-methyltransferase [Vibrio vulnificus CMCP6]
          Length = 239

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +       +++IG G G L+ M         +  ++ D       ++  S  P  +RL++
Sbjct: 38  ADFHHCQNLLDIGTGTGLLSLMCAQRYVHLSITAVDIDAHAMEAAQENFSHSPWHSRLQL 97

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
              D LK++F   F+      II N PY   
Sbjct: 98  QHGDVLKLNFTHRFDG-----IICNPPYFNS 123


>gi|296135432|ref|YP_003642674.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Thiomonas
           intermedia K12]
 gi|295795554|gb|ADG30344.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Thiomonas
           intermedia K12]
          Length = 216

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  +I +         V+EIGAG G +   LL   A  V  +E  ++   +
Sbjct: 57  GQNMLA-PKVEARILQELAVRKDEWVLEIGAGSGFM-AALLGHRAAAVQTLEIHEELVTM 114

Query: 86  LK-DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            + ++     N + + Q D         F++      +A +P ++  RL
Sbjct: 115 ARANLQRAGMNNVTVEQADGAHYAKSAEFDVIVLSGSVARIPQDLLQRL 163


>gi|1003020|gb|AAA79338.1| KsgA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 41

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 245 GGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
                L + GI+  +RAEN+S+  + ++ N L++N  +
Sbjct: 1   FSVETLTEMGIDPAMRAENISVAQYSQMANYLSENAPL 38


>gi|297160468|gb|ADI10180.1| O-methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 349

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 29/200 (14%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++ E+    DG +V+EIG G G    +L    G  +V  ++ D       +D  +
Sbjct: 120 PSLMARMLEALAVRDGDSVLEIGTGTGYNAALLAHRLGEDRVTTVDIDPDITDTARDHLA 179

Query: 92  QHPNRLEIIQDD-ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES- 149
               R  ++  D AL       F+       +  LP          W+          + 
Sbjct: 180 AAGYRPAVVTGDGALGCPSRAPFDRIIATCAVTALPPA--------WLDQCRCGALILAP 231

Query: 150 -LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
             T L    V +   A+    H+  L+         T  + +      P P V +     
Sbjct: 232 LTTGLIALRVAD---AEHGEGHF--LT---------TPAYFVPLRGSEPRPPVRT---KG 274

Query: 209 IPHLNPIPCCLESLKKITQE 228
           +P    +      L  +   
Sbjct: 275 LPTGPLLEDSFRFLLNVVTA 294


>gi|164659189|ref|XP_001730719.1| hypothetical protein MGL_2173 [Malassezia globosa CBS 7966]
 gi|159104616|gb|EDP43505.1| hypothetical protein MGL_2173 [Malassezia globosa CBS 7966]
          Length = 386

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 105/339 (30%), Gaps = 90/339 (26%)

Query: 29  FLLDLNILKKIAESSGSLDGI------TVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQ 81
           F+ +   ++ I    G  +        T++E   GPG  T+  LL     +V+ ++    
Sbjct: 24  FVANRGTVQGIVSQLGLDEREAQGIKTTIVEAYPGPGTFTREFLLHPNVERVVSMDNVPM 83

Query: 82  FFPILKDI-----SSQHPNRLEIIQDDALKVD-------------------------FEK 111
           F   L+ +          ++L II +     D                            
Sbjct: 84  FLEQLEHLREDPALKHVQHKLGIIPESGYAWDSYEMMVEQGLLRHLEGRVPKLGPQAPPM 143

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE------SLTLLFQKEVGERITAQ 165
            ++ +SPI   A LP  +    LF  I       FW        L  +  + V  R  A 
Sbjct: 144 DWHATSPILFFAQLPNTVHGEQLFAQIINAISSRFWLFKFGRVKLVFVCGETVSLRSLAT 203

Query: 166 KN-SPHYGRLSVLTGWRTKATMMF-----------------DISPH-----VFFPSPKVT 202
              S    +L       +   ++                   + P      VF P+  ++
Sbjct: 204 PQESRTRAKLGATVQCLSTPRLLLPAHDLEPYADHMYPPTPSVGPRVPVTSVFIPNSNIS 263

Query: 203 S-------TVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRL--GGENLLH 251
           +       TV+   P   P+     +++ + +T+  F  + KT+ + LK +  G  N+L 
Sbjct: 264 TGLQKRKLTVLEIDPLPEPLIDQRDMDAFEFLTRNMFVLKSKTVLEGLKHVVPGAHNVLR 323

Query: 252 -QAGIETNL--RAE----------NLSIEDFCRITNILT 277
             A     +  R +           L+   +  +     
Sbjct: 324 LVAPEHPRMKDRPDDVVLPTTPIVELTNRQWASLAEAFE 362


>gi|307324690|ref|ZP_07603896.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
 gi|306889572|gb|EFN20552.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
          Length = 378

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            +++ ++ ES G  DG TV+EIGAG G N   +   LG   V+ ++ D +          
Sbjct: 91  PSLMAQMLESLGVRDGDTVLEIGAGTGYNAALLSHRLGPDHVVTVDVDPELVAAAAARLR 150

Query: 92  QHPNRLEIIQDD 103
           Q      ++  D
Sbjct: 151 QAGYEPTLVAGD 162


>gi|284991103|ref|YP_003409657.1| Ribosomal RNA adenine methylase transferase--like protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284064348|gb|ADB75286.1| Ribosomal RNA adenine methylase transferase- like protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 189

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
           ++ + + +       V+E+GAG G  T  +L     A +++ +E D     +L +     
Sbjct: 33  VRDMLDLADVPRAELVVELGAGTGVQTGEILARLSPAGRLVSLEIDPDLAKLLDERYD-- 90

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
             RL+++ D A  +D            +++ LPY 
Sbjct: 91  DPRLQVVCDSAENLDT--HLGGKRADVLVSALPYT 123


>gi|307155090|ref|YP_003890474.1| ubiquinone/menaquinone biosynthesis methyltransferase [Cyanothece
           sp. PCC 7822]
 gi|306985318|gb|ADN17199.1| ubiquinone/menaquinone biosynthesis methyltransferase [Cyanothece
           sp. PCC 7822]
          Length = 236

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 18/96 (18%)

Query: 24  YMGQNFLLDLNILKKI-----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            +GQ+         +I      + S    G   +++  G G+L+Q+L     +K  VI  
Sbjct: 31  SLGQH---------RIWKQMTVKWSEPRPGDRGLDVCCGSGDLSQLLARQVGKKGQVIGV 81

Query: 79  D--QQFFPILKDISSQHPN--RLEIIQDDALKVDFE 110
           D   Q   I +  ++      RLE ++ DALK+ FE
Sbjct: 82  DFSPQLLAIARQRAALTSPHLRLEFVEGDALKLPFE 117


>gi|241202866|ref|YP_002973962.1| methyltransferase type 12 [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240856756|gb|ACS54423.1| Methyltransferase type 12 [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 223

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93
           L +I  S  +     +IE+G G G  T+ LL  G  +  + +IE   +F   L+      
Sbjct: 34  LARIMTSEIAALDGPIIELGPGTGVFTRALLARGVSEADLTLIEYGPEFITSLQARFPTA 93

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
                ++Q DA  +     F       +++ LP
Sbjct: 94  ----RVLQMDAAHLAHADIFEGEPVGAVVSGLP 122


>gi|53724799|ref|YP_102254.1| hypothetical protein BMA0444 [Burkholderia mallei ATCC 23344]
 gi|67642928|ref|ZP_00441679.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei GB8
           horse 4]
 gi|121599320|ref|YP_993889.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei SAVP1]
 gi|126448425|ref|YP_001079762.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei NCTC
           10247]
 gi|166999714|ref|ZP_02265548.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei PRL-20]
 gi|167903751|ref|ZP_02490956.1| hypothetical protein BpseN_15967 [Burkholderia pseudomallei NCTC
           13177]
 gi|52428222|gb|AAU48815.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|121228130|gb|ABM50648.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei SAVP1]
 gi|126241295|gb|ABO04388.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei NCTC
           10247]
 gi|238524147|gb|EEP87582.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei GB8
           horse 4]
 gi|243064211|gb|EES46397.1| phospholipid N-methyltransferase PmtA [Burkholderia mallei PRL-20]
          Length = 214

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +   VIE+GAG G  T+ LL+ G  A +++++E D  F   L+         L ++  
Sbjct: 39  PGESARVIELGAGTGVFTRELLSRGVAADRLVLVEADPVFAATLRRRFPA----LRVMNV 94

Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126
           DA ++      F  +    +++ LP
Sbjct: 95  DAAELGITHGLFGDARASTVVSGLP 119


>gi|295704272|ref|YP_003597347.1| phospholipid N-methyltransferase [Bacillus megaterium DSM 319]
 gi|294801931|gb|ADF38997.1| phospholipid N-methyltransferase [Bacillus megaterium DSM 319]
          Length = 187

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 5/126 (3%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISS 91
           ++ KK+ +         ++E G G G  T  L+        +++IE ++ F+  +K+   
Sbjct: 25  HLAKKMVKGIDFEHADCIVEYGPGTGVFTHELIRRRSACTTLLLIEYNRHFYEKVKEQVR 84

Query: 92  QHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
              N + +I   A  ++    ++        +      ++ + +    +         E 
Sbjct: 85  DEKN-VYVIHGSAENVQKYLTQYDIPKVDYVLSGLPFASLTSEVSDCILQNTRSVLAEEG 143

Query: 150 LTLLFQ 155
             + FQ
Sbjct: 144 KFITFQ 149


>gi|302561626|ref|ZP_07313968.1| protein-L-isoaspartate O-methyltransferase 2 [Streptomyces
           griseoflavus Tu4000]
 gi|302479244|gb|EFL42337.1| protein-L-isoaspartate O-methyltransferase 2 [Streptomyces
           griseoflavus Tu4000]
          Length = 400

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +++  +    G+  G  V+EIGAG G    L   L+  G  +V  ++ D       +  
Sbjct: 75  PSVVAMMLAQLGAQPGDKVLEIGAGTGYNAALLAELVGRG--RVTTVDIDPDVALHARTT 132

Query: 90  SSQH-PNRLEIIQDDAL 105
            +    +R+ +I+ + L
Sbjct: 133 LNATGYDRVTVIERNGL 149


>gi|46198473|ref|YP_004140.1| ribosomal RNA small subunit methyltransferase C [Thermus
           thermophilus HB27]
 gi|46196095|gb|AAS80513.1| ribosomal RNA small subunit methyltransferase C [Thermus
           thermophilus HB27]
          Length = 375

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G  V+++GAG G LT  L  +GA +V+ +E D      L+     +  + + +  D   
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDV-- 289

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              E     +    I+ N P+++G  ++ +
Sbjct: 290 --DEALTEEARFDIIVTNPPFHVGGAVILD 317


>gi|319784639|ref|YP_004144115.1| methyltransferase type 11 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170527|gb|ADV14065.1| Methyltransferase type 11 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 294

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+EIGAGPG++ + L+ L   +V  +E D    PILK         ++ +Q D 
Sbjct: 31  VGRDKDVLEIGAGPGSIAKPLIALNGCRVTALEYDPNCIPILKSFC------VDAVQGDL 84

Query: 105 LKVDFEKFFNISSPIRII 122
               + + F       ++
Sbjct: 85  NTPGWGEVFGERRFDAVV 102


>gi|253574634|ref|ZP_04851974.1| 50S ribosomal protein L11 methyltransferase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845680|gb|EES73688.1| 50S ribosomal protein L11 methyltransferase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 322

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 13/112 (11%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--IS 90
           L  L+ I       +G  VI++G G G L      LGA KV+ ++ D       K+    
Sbjct: 166 LRTLESII-----QEGDEVIDVGTGSGILAIGACRLGASKVLALDLDPVAVSSAKENTRL 220

Query: 91  SQHPNRLEIIQDD---ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +   +R+++++ D    LK +      I  P+R++     NI   ++  +I 
Sbjct: 221 NGLEDRIQVVESDLLSVLKGEGSTGVEIKLPVRVVVA---NILAEIILLFIE 269


>gi|118590477|ref|ZP_01547879.1| phospholipid N-methyltransferase [Stappia aggregata IAM 12614]
 gi|118436940|gb|EAV43579.1| phospholipid N-methyltransferase [Stappia aggregata IAM 12614]
          Length = 220

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 6   KSHSLKT-ILSHYKIIPKKYMGQNFLLD-------LNILKKIAESSGSLDGITVIEIGAG 57
           K+ +++  +L   K I  +   QN L           +  ++A          V+E+G G
Sbjct: 18  KASAVRAKVLDEVKFI--RSWAQNPLRTGAVAPSGPELAARMASFLTPRPHSRVVELGPG 75

Query: 58  PGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            G +T+ +L  G  + ++ +IE   +F  +L      +P  L+++Q DA
Sbjct: 76  TGVVTKAILERGFSSHQLSLIEYCPEFCELLTRR---YPG-LKVVQGDA 120


>gi|262831256|sp|A1S987|TRMN6_SHEAM RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
          Length = 233

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII 100
           +       V+++GAG G L  M        +  IE D       +   S    P+R+ +I
Sbjct: 30  ANLDGADAVLDLGAGSGLLALMAAQRCKAPITAIEIDPVAASACRSNFSASPWPDRINLI 89

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           + DA      +         I+ N PY     L   
Sbjct: 90  EADA---TDAEALAGKVFTHILCNPPYFETGPLSEK 122


>gi|119775873|ref|YP_928613.1| hypothetical protein Sama_2741 [Shewanella amazonensis SB2B]
 gi|119768373|gb|ABM00944.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 247

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII 100
           +       V+++GAG G L  M        +  IE D       +   S    P+R+ +I
Sbjct: 44  ANLDGADAVLDLGAGSGLLALMAAQRCKAPITAIEIDPVAASACRSNFSASPWPDRINLI 103

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           + DA      +         I+ N PY     L   
Sbjct: 104 EADA---TDAEALAGKVFTHILCNPPYFETGPLSEK 136


>gi|22255853|gb|AAM94778.1| CalE3 [Micromonospora echinospora]
          Length = 297

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 13/147 (8%)

Query: 37  KKI----AESSGSLDGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-- 89
           ++I       +G++D  TV+ ++GAG   LT + L  GA  V  +E D Q   +   I  
Sbjct: 17  RRIEAYDRALAGAVDEDTVVADVGAGTLALTALALRHGAAHVYAVEADPQVAAVADRIIK 76

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT-RLLFNWISADTWPPFWE 148
           ++   +R+ ++  DA      +  +++     +  L  N+G    +   +          
Sbjct: 77  ANDWDDRVTLVVGDARLARLPRQVDVT-----VCELMGNLGPEEDMARILRTFNRRNLRP 131

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLS 175
              ++ ++ V      Q +   +G  S
Sbjct: 132 GGVVVPERVVTRLAAVQFDDEGWGIWS 158


>gi|194709257|pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
           In Complex With Adomet
 gi|194709258|pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
           In Complex With Adohcy
 gi|194709259|pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
           In Complex With Adomet And Guanosine
          Length = 381

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G  V+++GAG G LT  L  +GA +V+ +E D      L+     +  + + +  D   
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDV-- 289

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              E     +    I+ N P+++G  ++ +
Sbjct: 290 --DEALTEEARFDIIVTNPPFHVGGAVILD 317


>gi|159036359|ref|YP_001535612.1| methyltransferase type 11 [Salinispora arenicola CNS-205]
 gi|157915194|gb|ABV96621.1| Methyltransferase type 11 [Salinispora arenicola CNS-205]
          Length = 265

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 10/71 (14%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH 93
            ++I   +G   G  V +IGAG G LT  L    A    V  ++ D +  P         
Sbjct: 31  TRRILTDAGLQPGWNVTDIGAGAGTLTTWLSDQVAPDGHVTAVDLDPRHVPA-------- 82

Query: 94  PNRLEIIQDDA 104
              + +   D 
Sbjct: 83  GPNVTVRTGDV 93


>gi|55980502|ref|YP_143799.1| ribosomal RNA small subunit methyltransferase [Thermus thermophilus
           HB8]
 gi|262118483|pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
           Methyltransferase Rsmc (Ttha0533) In Complex With
           Cofactor S-Adenosyl-L-Methionine
 gi|281500681|pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
           Methyltransferase Rsmc (Ttha0533)
 gi|55771915|dbj|BAD70356.1| probable ribosomal RNA small subunit methyltransferase [Thermus
           thermophilus HB8]
          Length = 375

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G  V+++GAG G LT  L  +GA +V+ +E D      L+     +  + + +  D   
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDV-- 289

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              E     +    I+ N P+++G  ++ +
Sbjct: 290 --DEALTEEARFDIIVTNPPFHVGGAVILD 317


>gi|66356728|ref|XP_625542.1| arginine N-methyltransferase [Cryptosporidium parvum Iowa II]
 gi|46226609|gb|EAK87597.1| putative arginine N-methyltransferase [Cryptosporidium parvum Iowa
           II]
          Length = 665

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           NF+ D N       S        V+++G G G L+   +  GA+ V+ ++  +    I +
Sbjct: 330 NFITDPN------NSINLFKDKIVLDVGTGTGILSLFAVKSGAKMVVAVDAAKDTIKIAE 383

Query: 88  DISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            I+  +   N++  I     K +    F + + +  I+ 
Sbjct: 384 KIAQANNLGNKIHFICG---KFEDLSLFIVENKVISISK 419


>gi|289582978|ref|YP_003481444.1| methyltransferase type 11 [Natrialba magadii ATCC 43099]
 gi|289532531|gb|ADD06882.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099]
          Length = 268

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + + +         ++++G G G+LT  +   GA    V+  D     +L +   ++P+R
Sbjct: 28  EDVVDLLEPAPDERILDLGCGTGHLTDQIARSGAD---VVGLDA-SGEMLAEARERYPDR 83

Query: 97  LEIIQDDALKVDFEKFFN 114
            E ++ DA    FE  F+
Sbjct: 84  -EFVRADARDFSFEAEFD 100


>gi|111023619|ref|YP_706591.1| methyltransferase [Rhodococcus jostii RHA1]
 gi|110823149|gb|ABG98433.1| possible methyltransferase [Rhodococcus jostii RHA1]
          Length = 353

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 14/161 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            ++  ++G   G +++EIG G G  T  L   G   +  +E   +   I +   +  PN 
Sbjct: 119 DELVLTAGLRPGDSLLEIGGGSGKATVELARRG-FTITSVELGHELAAIARANVAPFPNA 177

Query: 97  LEIIQDDALKVDFEK-----FFNISSPIRIIANLPYNIGTRLLFN-------WISADTWP 144
            E++  D    +            ++    I      I    L         W +   +P
Sbjct: 178 -EVVCADFEHWEPAPGMTYDLACAATSWHWIDPATRYIKAASLIRPGGHLALWSAQHVFP 236

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
              + +    Q    E      ++  + R   L   + +  
Sbjct: 237 EGGDPIFREIQPVYEEIGDGLPDTATWARPGELADHQAEIE 277


>gi|288941827|ref|YP_003444067.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Allochromatium vinosum DSM 180]
 gi|90856160|gb|ABE01371.1| probable L-isoaspartate(D-aspartate)o-methyltransferase
           [Allochromatium vinosum]
 gi|288897199|gb|ADC63035.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Allochromatium vinosum DSM 180]
          Length = 221

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 8/146 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ-QFFPILKDISS 91
             ++  + ++     G   +EIG G G +   L  LGAR VI +E D  Q    ++ + +
Sbjct: 65  PKVVGHLLQALAVQPGDRALEIGTGSGYVAACLSRLGAR-VISLEIDPMQAAEAVERLEA 123

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
              + +E+ + D L             I +  ++P      +L   ++            
Sbjct: 124 LKFDWVEVREGDGLAGPVSGA--PFDAIAVKGSMPTEDALPMLREQLTIGGRLFCILGTA 181

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVL 177
              +         +     Y R S+ 
Sbjct: 182 PAME----CVCVTRVGRHDYRRESLF 203


>gi|221201707|ref|ZP_03574745.1| putative methyltransferase [Burkholderia multivorans CGD2M]
 gi|221207218|ref|ZP_03580228.1| putative methyltransferase [Burkholderia multivorans CGD2]
 gi|221172806|gb|EEE05243.1| putative methyltransferase [Burkholderia multivorans CGD2]
 gi|221178523|gb|EEE10932.1| putative methyltransferase [Burkholderia multivorans CGD2M]
          Length = 377

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +V+  ++D +     ++   +  +  R+
Sbjct: 190 VARAPLPATSVAFDIGTGTGVLAAVLASRGVERVVATDQDPRALACARENLERLGYAGRV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++++ D         F       ++ N P+
Sbjct: 250 DVVEAD--------LFPPGRAPLVVCNPPW 271


>gi|307127610|ref|YP_003879641.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae 670-6B]
 gi|301801668|emb|CBW34371.1| putative methyltransferase [Streptococcus pneumoniae INV200]
 gi|306484672|gb|ADM91541.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae 670-6B]
 gi|332077252|gb|EGI87714.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA17545]
          Length = 193

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KKI +              G TV+++G G G L   L      + 
Sbjct: 21  LGQKMTFLTDAGVFSKKIVDFGSQLLLKCLEVNQGETVLDVGCGYGPLGLSLAKAYGVQA 80

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +  +   E  F+      +I+N P   G ++
Sbjct: 81  TMVDINTRALDLARRNAEKNNAKATIFQSNIYE-QVEGHFD-----HVISNPPIRAGKQV 134

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 135 VHEIIEKSKDFLETGGDLTIVIQK 158


>gi|183603300|ref|ZP_02713985.2| methyltransferase small domain superfamily [Streptococcus
           pneumoniae SP195]
 gi|225856507|ref|YP_002738018.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae P1031]
 gi|237650831|ref|ZP_04525083.1| methyltransferase small domain superfamily protein [Streptococcus
           pneumoniae CCRI 1974]
 gi|183571845|gb|EDT92373.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae SP195]
 gi|225724345|gb|ACO20197.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae P1031]
 gi|301799838|emb|CBW32410.1| putative methyltransferase [Streptococcus pneumoniae OXC141]
 gi|332073168|gb|EGI83647.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA17570]
 gi|332076119|gb|EGI86585.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA41301]
          Length = 193

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KKI +              G TV+++G G G L   L      + 
Sbjct: 21  LGQKMTFLTDAGVFSKKIVDFGSQLLLKCLEVNQGETVLDVGCGYGPLGLSLAKAYGVQA 80

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +  +   E  F+      +I+N P   G ++
Sbjct: 81  TMVDINTRALDLARRNAEKNNAKATIFQSNIYE-QVEGHFD-----HVISNPPIRAGKQV 134

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 135 VHEIIEKSKDFLETGGDLTIVIQK 158


>gi|183603138|ref|ZP_02964308.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae CDC1087-00]
 gi|183571063|gb|EDT91591.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae CDC1087-00]
 gi|332202695|gb|EGJ16764.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA41317]
          Length = 193

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KKI +              G TV+++G G G L   L      + 
Sbjct: 21  LGQKMTFLTDAGVFSKKIVDFGSQLLLKCLEVNQGETVLDVGCGYGPLGLSLAKAYGVQA 80

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +  +   E  F+      +I+N P   G ++
Sbjct: 81  TMVDINTRALDLARRNAEKNNAKATIFQSNIYE-QVEGHFD-----HVISNPPIRAGKQV 134

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 135 VHEIIEKSKDFLETGGDLTIVIQK 158


>gi|182683753|ref|YP_001835500.1| hypothetical protein SPCG_0783 [Streptococcus pneumoniae CGSP14]
 gi|303254023|ref|ZP_07340141.1| hypothetical protein CGSSpBS455_01006 [Streptococcus pneumoniae
           BS455]
 gi|303260303|ref|ZP_07346274.1| hypothetical protein CGSSp9vBS293_03683 [Streptococcus pneumoniae
           SP-BS293]
 gi|303261509|ref|ZP_07347457.1| hypothetical protein CGSSp14BS292_09260 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264177|ref|ZP_07350098.1| hypothetical protein CGSSpBS397_06242 [Streptococcus pneumoniae
           BS397]
 gi|303267043|ref|ZP_07352915.1| hypothetical protein CGSSpBS457_00275 [Streptococcus pneumoniae
           BS457]
 gi|303269195|ref|ZP_07354972.1| hypothetical protein CGSSpBS458_02909 [Streptococcus pneumoniae
           BS458]
 gi|182629087|gb|ACB90035.1| hypothetical protein SPCG_0783 [Streptococcus pneumoniae CGSP14]
 gi|302599003|gb|EFL66031.1| hypothetical protein CGSSpBS455_01006 [Streptococcus pneumoniae
           BS455]
 gi|302637643|gb|EFL68130.1| hypothetical protein CGSSp14BS292_09260 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638627|gb|EFL69091.1| hypothetical protein CGSSpBS293_03683 [Streptococcus pneumoniae
           SP-BS293]
 gi|302641259|gb|EFL71629.1| hypothetical protein CGSSpBS458_02909 [Streptococcus pneumoniae
           BS458]
 gi|302643437|gb|EFL73712.1| hypothetical protein CGSSpBS457_00275 [Streptococcus pneumoniae
           BS457]
 gi|302646582|gb|EFL76808.1| hypothetical protein CGSSpBS397_06242 [Streptococcus pneumoniae
           BS397]
          Length = 196

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KKI +              G TV+++G G G L   L      + 
Sbjct: 24  LGQKMTFLTDAGVFSKKIVDFGSQLLLKCLEVNQGETVLDVGCGYGPLGLSLAKAYGVQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +  +   E  F+      +I+N P   G ++
Sbjct: 84  TMVDINTRALDLARRNAEKNNAKATIFQSNIYE-QVEGHFD-----HVISNPPIRAGKQV 137

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 138 VHEIIEKSKDFLETGGDLTIVIQK 161


>gi|149010531|ref|ZP_01831902.1| methyltransferase small domain, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|147765012|gb|EDK71941.1| methyltransferase small domain, putative [Streptococcus pneumoniae
           SP19-BS75]
          Length = 196

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KKI +              G TV+++G G G L   L      + 
Sbjct: 24  LGQKMTFLTDAGVFSKKIVDFGSQLLLKCLEVNQGETVLDVGCGYGPLGLSLAKAYGVQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +  +   E  F+      +I+N P   G ++
Sbjct: 84  TMVDINTRALDLARRNAEKNNAKATIFQSNIYE-QVEGHFD-----HVISNPPIRAGKQV 137

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 138 VHEIIEKSKDFLETGGDLTIVIQK 161


>gi|148986069|ref|ZP_01819090.1| pantothenate kinase [Streptococcus pneumoniae SP3-BS71]
 gi|148992507|ref|ZP_01822202.1| pantothenate kinase [Streptococcus pneumoniae SP9-BS68]
 gi|149004045|ref|ZP_01828851.1| pantothenate kinase [Streptococcus pneumoniae SP14-BS69]
 gi|149021705|ref|ZP_01835736.1| pantothenate kinase [Streptococcus pneumoniae SP23-BS72]
 gi|147757946|gb|EDK64954.1| pantothenate kinase [Streptococcus pneumoniae SP14-BS69]
 gi|147921903|gb|EDK73029.1| pantothenate kinase [Streptococcus pneumoniae SP3-BS71]
 gi|147928824|gb|EDK79837.1| pantothenate kinase [Streptococcus pneumoniae SP9-BS68]
 gi|147930166|gb|EDK81152.1| pantothenate kinase [Streptococcus pneumoniae SP23-BS72]
          Length = 196

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KKI +              G TV+++G G G L   L      + 
Sbjct: 24  LGQKMTFLTDAGVFSKKIVDFGSQLLLKCLEVNQGETVLDVGCGYGPLGLSLAKAYGVQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +  +   E  F+      +I+N P   G ++
Sbjct: 84  TMVDINTRALDLARRNAEKNNAKATIFQSNIYE-QVEGHFD-----HVISNPPIRAGKQV 137

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 138 VHEIIEKSKDFLETGGDLTIVIQK 161


>gi|218264183|ref|ZP_03478067.1| hypothetical protein PRABACTJOHN_03757 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222229|gb|EEC94879.1| hypothetical protein PRABACTJOHN_03757 [Parabacteroides johnsonii
           DSM 18315]
          Length = 205

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 70/185 (37%), Gaps = 23/185 (12%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 ++E+G+G G++T +L  L    +I  EKD+Q   I +       NR  I+ ++ 
Sbjct: 41  LNKDNRILEVGSGLGDITAILCYLDFTNIIAFEKDEQICHIAQRRLKDMFNRENIVYNE- 99

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
            K    +  N SS + ++ N  Y    +    ++S              +  E+ +    
Sbjct: 100 -KFPNRQ--NYSSDVLVLVNCAYADVAKSKEEYLSLLKEYYICAGKPQYYLMEIIDSSYT 156

Query: 165 QKN--SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESL 222
           + +   P Y RL+       +   +F              ST++ +  +  PI    ++L
Sbjct: 157 KTDKEFPEYIRLN-----YDEVRTLF------------PCSTIMSWETYKYPINRKSKTL 199

Query: 223 KKITQ 227
             I +
Sbjct: 200 YLIIK 204


>gi|296137232|ref|YP_003644474.1| Methyltransferase type 12 [Thiomonas intermedia K12]
 gi|295797354|gb|ADG32144.1| Methyltransferase type 12 [Thiomonas intermedia K12]
          Length = 224

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 49  ITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             VIE+GAG G  T+ L+  G     ++V+E+D     +L+    +    L++IQ DA
Sbjct: 61  QRVIELGAGTGAFTRALIEHGLHCANLLVVERDASLHGLLRQRFPE----LQLIQADA 114


>gi|169828427|ref|YP_001698585.1| hypothetical protein Bsph_2926 [Lysinibacillus sphaericus C3-41]
 gi|168992915|gb|ACA40455.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 185

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP 94
           KK+ +         ++E G G G  T+ +L    +  KV+++E +++F+ +LK    +  
Sbjct: 29  KKMVKEIDFEQAEYIVEFGPGTGVFTENILKKRKQTTKVVLVENNKEFYTLLKARYIKEK 88

Query: 95  NRLEI-----IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           N + I       +D L  +   + +        A+LP N+ + +L N + 
Sbjct: 89  NFVIIDSSAEYIEDILIENDIPYADYIISGLPFASLPKNVSSNILRNSLK 138


>gi|134103238|ref|YP_001108899.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291007970|ref|ZP_06565943.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133915861|emb|CAM05974.1| ribosomal RNA adenine dimethylase domain protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 7/119 (5%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
             V+E+G G G L+  +      +   + +E D      L+    Q    LE+++ DA +
Sbjct: 48  PVVVELGPGTGALSGEIRARLPERGRHLAVEIDPAMVRYLR----QAKPWLEVVEGDAAR 103

Query: 107 V-DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           + +      +S    +I+++P+ +        + ++                +     A
Sbjct: 104 LRELLSAVGVSKADAVISSIPWTLLPPAKQRELLSEAAAALNPDGVFTTVTYLTTLWRA 162


>gi|153005769|ref|YP_001380094.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
 gi|152029342|gb|ABS27110.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
          Length = 210

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--IS 90
             ++  + + +       V ++G G G +       GARK I ++ D +     ++   +
Sbjct: 61  ERVVATMLDLAKVGPRDVVYDLGCGDGRIVVEAAKRGARKAIGVDIDPERIAEAREKVRA 120

Query: 91  SQHPNRLEIIQDDALKVDFEK 111
           +   +R+EI + D  ++DF  
Sbjct: 121 AGVGDRVEIREGDLFEMDFSD 141


>gi|150376567|ref|YP_001313163.1| type 11 methyltransferase [Sinorhizobium medicae WSM419]
 gi|150031114|gb|ABR63230.1| Methyltransferase type 11 [Sinorhizobium medicae WSM419]
          Length = 273

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNR 96
           K  + +G  DG  V+++G G G+LT  L      R++  I+    F       ++    +
Sbjct: 27  KFIDFAGIGDGERVLDVGCGTGSLTFALAKAANLREIAAIDYSPVFVAEAARRNTDPRIK 86

Query: 97  LEIIQDDALKVDFEKF 112
            E     AL  D   F
Sbjct: 87  FEEADACALPFDDGSF 102


>gi|83719769|ref|YP_442053.1| protein-L-isoaspartate O-methyltransferase [Burkholderia
           thailandensis E264]
 gi|167618994|ref|ZP_02387625.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           thailandensis Bt4]
 gi|257138235|ref|ZP_05586497.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           thailandensis E264]
 gi|83653594|gb|ABC37657.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           thailandensis E264]
          Length = 217

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  ++ +         V+EIGAG G +  +L   G R V  +E D      
Sbjct: 57  GQKMLF-PRVEARVLQELAVKKHENVLEIGAGSGYMAALLAARGQR-VTTVEIDPDLAKF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            ++   ++     E++  D  +    K       I +   LP
Sbjct: 115 AEENLKKNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154


>gi|4239958|dbj|BAA74757.1| Orf375 [Thermus thermophilus]
          Length = 375

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G  V+++GAG G LT  L  +GA +V+ +E D      L+     +  + + +  D   
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDV-- 289

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              E     +    I+ N P+++G  ++ +
Sbjct: 290 --DEALTEEARFDIIVTNPPFHVGGAVILD 317


>gi|103487373|ref|YP_616934.1| methyltransferase [Sphingopyxis alaskensis RB2256]
 gi|123078262|sp|Q1GRX1|RSMH_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|98977450|gb|ABF53601.1| methyltransferase [Sphingopyxis alaskensis RB2256]
          Length = 325

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  +L ++  +     G   ++   G G  T+ +L  GA +VI  ++D       + + 
Sbjct: 10  HDPVLLDEVIAALAIAPGERHVDATFGAGGYTRAMLAAGA-EVIACDRDPDAIAGGEALV 68

Query: 91  SQHPNRLEIIQDDALKVD 108
           ++   RL +I     ++D
Sbjct: 69  AEADGRLTLIHGRFGEID 86


>gi|323452819|gb|EGB08692.1| N6-adenine specific methyltransferase-like protein, HemK
           [Aureococcus anophagefferens]
          Length = 368

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM---LLTLGARKVIVIEKDQQFFPIL 86
           LLD    ++   S  +L   TV+E+G G G ++     LL   A +V+ ++ + +   + 
Sbjct: 40  LLDALFAER--SSLRALGDATVVEVGPGSGVVSAYVAALLAAQAPRVVCVDVNPRACALS 97

Query: 87  KDISSQHPNRLEIIQDD 103
              ++ +  R+++++ D
Sbjct: 98  ARTAAANGARVDVVRGD 114


>gi|167580892|ref|ZP_02373766.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           thailandensis TXDOH]
          Length = 217

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  ++ +         V+EIGAG G +  +L   G R V  +E D      
Sbjct: 57  GQKMLF-PRVEARVLQELAVKKHENVLEIGAGSGYMAALLAARGQR-VTTVEIDPDLAKF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            ++   ++     E++  D  +    K       I +   LP
Sbjct: 115 AEENLKRNGVTNAEVVLGDGSRGWPAKA--PYDVICVSGGLP 154


>gi|224065793|ref|XP_002189936.1| PREDICTED: similar to HemK methyltransferase family member 1
           [Taeniopygia guttata]
          Length = 305

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
            +    ++EIG G G +   LL    + +VI ++K++    + ++ +   Q   R+ II 
Sbjct: 124 PVPHPVILEIGCGSGAIALSLLCKLPQSRVIAMDKEEAAVDLTRENAHRLQLQERIRIIH 183

Query: 102 DDALKVDFEKFFNISSPIRIIANLPY 127
            D      ++         I++N PY
Sbjct: 184 QDVSHSSAKQLLLWGPIDVIVSNPPY 209


>gi|83590288|ref|YP_430297.1| UbiE/COQ5 methyltransferase [Moorella thermoacetica ATCC 39073]
 gi|83573202|gb|ABC19754.1| UbiE/COQ5 methyltransferase [Moorella thermoacetica ATCC 39073]
          Length = 201

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
           L+ I        G TV+++G G G L   LL     A +++ ++  +      +  S   
Sbjct: 27  LETIIRGLNIAPGSTVLDVGCGTGILIPYLLAAVGPAGRIVALDIAEAMLERAQ--SKGF 84

Query: 94  PNRLEIIQDDALKVDFEK 111
           P  +E I  D + V +  
Sbjct: 85  PANVEFICADVVSVPYPD 102


>gi|288961943|ref|YP_003452253.1| putative ribosomal RNA adenine methylase transferase [Azospirillum
           sp. B510]
 gi|288914223|dbj|BAI75709.1| putative ribosomal RNA adenine methylase transferase [Azospirillum
           sp. B510]
          Length = 191

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A+++G      V+E+G G G +T  LL+ G     ++++E D  F   L     Q
Sbjct: 30  LCRAMAKAAGCGPERRVVELGPGTGPVTSALLSHGVTPGNLLMVELDAAFADHLA---IQ 86

Query: 93  HPNRLEIIQDDALKVDF-EKFFNISSPIRIIANLP 126
           HP+   +++ DA ++    +         +++ LP
Sbjct: 87  HPDA-TVVRGDATRIQRIVQTHGWKDCDAVVSGLP 120


>gi|218462188|ref|ZP_03502279.1| phospholipid N-methyltransferase protein [Rhizobium etli Kim 5]
 gi|218662831|ref|ZP_03518761.1| phospholipid N-methyltransferase protein [Rhizobium etli IE4771]
          Length = 222

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93
           L +I  S  +     +IE+G G G  T+ LL  G  +  + +IE   +F   L+      
Sbjct: 34  LARIMTSEIAALDGPIIELGPGTGVFTRALLARGISEADLTLIEYGPEFIDALQARFPAA 93

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNWISAD 141
                ++Q DA  +     F       +I+ LP  ++  R + + ++  
Sbjct: 94  ----RVLQMDAAHLVQADIFEDEPVGAVISGLPLLSMSPRKIASILAGA 138


>gi|53720135|ref|YP_109121.1| hypothetical protein BPSL2525 [Burkholderia pseudomallei K96243]
 gi|76809416|ref|YP_334384.1| hypothetical protein BURPS1710b_3006 [Burkholderia pseudomallei
           1710b]
 gi|226197928|ref|ZP_03793502.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           Pakistan 9]
 gi|254195656|ref|ZP_04902083.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           S13]
 gi|254295610|ref|ZP_04963068.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           406e]
 gi|52210549|emb|CAH36532.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|76578869|gb|ABA48344.1| conserved hypothetical protein [Burkholderia pseudomallei 1710b]
 gi|157805553|gb|EDO82723.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           406e]
 gi|169652402|gb|EDS85095.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           S13]
 gi|225930116|gb|EEH26129.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           Pakistan 9]
          Length = 228

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +   VIE+GAG G  T+ LL+ G  A +++++E D  F   L+         L ++  
Sbjct: 53  PGESARVIELGAGTGVFTRELLSRGVAADRLVLVEADPAFAATLRRRFPA----LRVMNI 108

Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126
           DA ++      F  +    +++ LP
Sbjct: 109 DAAELGITHGLFGDARASTVVSGLP 133


>gi|328874821|gb|EGG23186.1| Sterol 24-C-methyltransferase [Dictyostelium fasciculatum]
          Length = 465

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 50/118 (42%), Gaps = 16/118 (13%)

Query: 25  MGQNF----------LLDLNILK---KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            GQ+F           L+  +++    +A+++       V+++G G G  T  +      
Sbjct: 206 WGQHFHFAPFKNNTETLEEAVVRLEHDVADAARITKDSYVLDVGCGVGGPTLEIAQYTGC 265

Query: 72  KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLP 126
           +++ +  +++   I +D + +    +R      DA+K+ +    F++ +      ++P
Sbjct: 266 RIVGLNINKKQVEICRDRAKKLGLADRAAFTHGDAMKMPYADNTFDVVTFFESTCHMP 323


>gi|312114867|ref|YP_004012463.1| ribosomal RNA adenine methylase transferase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219996|gb|ADP71364.1| ribosomal RNA adenine methylase transferase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 207

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 15/171 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP 94
           + + E  G      VIE+GAG G +T+ L+  G    K+ ++E D +    L+       
Sbjct: 43  RAMTEVLGKRIESHVIELGAGTGAVTRQLIRNGVEPGKLTLVEIDARLGGHLRRRFPDT- 101

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           + L    +D  KV  E+  N  +   II+ LP  + ++ L  ++         +   +  
Sbjct: 102 DVLIGSAEDLAKVWQER--NGENVGAIISTLPMRLFSKKLI-YLVMKNSLQVLDEGGMFV 158

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF-----PSPK 200
           Q    +         +  RL     WR    +  ++ P   +     P P+
Sbjct: 159 QFTYRQTSPVPPRVVNALRL---KAWRYT-RVWLNLPPAAIWVYERMPQPR 205


>gi|268325126|emb|CBH38714.1| conserved hypothetical protein, SAM dependent methyltransferase
           family [uncultured archaeon]
          Length = 272

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 37  KKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQH 93
           +K  E+      +   V+EIGAG G LT  L     +KV+ IE  +     LK  I    
Sbjct: 50  RKTVEALSEILGENFEVLEIGAGSGTLTIPLAK-KIKKVVAIESSEMAVDYLKRNIKESR 108

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
              +EII ++ L+V+  +  +
Sbjct: 109 VENVEIINENWLEVEDREIED 129


>gi|217420579|ref|ZP_03452084.1| putative phospholipid N-methyltransferase PmtA [Burkholderia
           pseudomallei 576]
 gi|217395991|gb|EEC36008.1| putative phospholipid N-methyltransferase PmtA [Burkholderia
           pseudomallei 576]
          Length = 228

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +   VIE+GAG G  T+ LL+ G  A +++++E D  F   L+         L ++  
Sbjct: 53  PGESARVIELGAGTGVFTRELLSRGVAADRLVLVEADPAFAATLRRRFPA----LRVMNI 108

Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126
           DA ++      F  +    +++ LP
Sbjct: 109 DAAELGITHGLFGDARASTVVSGLP 133


>gi|209694152|ref|YP_002262080.1| hypothetical protein VSAL_I0559 [Aliivibrio salmonicida LFI1238]
 gi|262827863|sp|B6EMW5|TRMN6_ALISL RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|208008103|emb|CAQ78244.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 234

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 16/92 (17%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS------SQHPN 95
           +       +++IG G G L+ M         V  +E      P+  +++      S   N
Sbjct: 32  ANIEQSKNILDIGCGTGLLSLMSAQRNENSHVDAVE----LMPLAAEVALQNFVQSPWKN 87

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           RL +I  D L       ++      II N PY
Sbjct: 88  RLHLIHQDILHYHPAHLYD-----AIICNPPY 114


>gi|15902787|ref|NP_358337.1| hypothetical protein spr0743 [Streptococcus pneumoniae R6]
 gi|116516099|ref|YP_816227.1| methyltransferase small subunit [Streptococcus pneumoniae D39]
 gi|15458336|gb|AAK99547.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076675|gb|ABJ54395.1| methyltransferase small domain, putative [Streptococcus pneumoniae
           D39]
          Length = 196

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KKI +              G TV+++G G G L   L      + 
Sbjct: 24  LGQKMTFLTDAGVFSKKIVDFGSQLLLKCLEVNQGETVLDVGCGYGPLGLSLAKAYGVQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +  +   E  F+      +I+N P   G ++
Sbjct: 84  TMVDINTRALDLARRNAEKNNAKATIFQSNIYE-QVEGHFD-----HVISNPPIRAGKQV 137

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 138 VHEIIEKSKDFLETSGDLTIVIQK 161


>gi|194336451|ref|YP_002018245.1| phospholipid N-methyltransferase [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308928|gb|ACF43628.1| phospholipid N-methyltransferase [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 179

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K + +S   LD   VIEIGAG G +T+ + +L     +++E DQ+F  +L+       
Sbjct: 35  LAKAMFKSIKELDDTAVIEIGAGTGAITKHISSLNP---LLVEIDQEFCAVLRKNFPH-- 89

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             L+ +   AL    E+   +     ++ ++P
Sbjct: 90  --LKTVNSCAL----EELKKVDERFGLVLSIP 115


>gi|326318280|ref|YP_004235952.1| cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375116|gb|ADX47385.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 427

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           L +IA+      G  V+EIG G G L Q +   GAR
Sbjct: 199 LDRIAQHLALQPGDEVLEIGCGWGALAQDMARRGAR 234


>gi|126177984|ref|YP_001045949.1| methyltransferase type 11 [Methanoculleus marisnigri JR1]
 gi|125860778|gb|ABN55967.1| Methyltransferase type 11 [Methanoculleus marisnigri JR1]
          Length = 288

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 16/138 (11%)

Query: 39  IAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           I E +G    G  V++IG GPG L+  L   GA  V  ++   +    L++ +     R+
Sbjct: 59  ILEEAGFSPEGARVLDIGCGPGTLSLPLARAGAD-VTALDISTRMLDHLRETAQNEGLRV 117

Query: 98  EIIQ-----DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             ++      D  ++ F + F+    + I +  P           ++      ++     
Sbjct: 118 NAVECSWWSADIDRLGFREKFD----LVIASMTPGIRDVETFDRMMACSRQFCYYSRFVG 173

Query: 153 -----LFQKEVGERITAQ 165
                  ++E+  +I  +
Sbjct: 174 RVGTDGARREIFRKILGE 191


>gi|42523529|ref|NP_968909.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|51316635|sp|Q6MLF5|Y2056_BDEBA RecName: Full=Uncharacterized RNA methyltransferase Bd2056
 gi|39575735|emb|CAE79902.1| hypothetical RNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
          Length = 388

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 18/138 (13%)

Query: 34  NILKKIA-----ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +   KI      +         +IE G+G GNLT   L  GA  V+  E D+     L+ 
Sbjct: 215 HTANKIICDVIYDWVKRYKAQRLIEFGSGIGNLTFPALA-GAESVLACEIDELSLQGLER 273

Query: 89  ISSQHP-------NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL--FNWIS 139
             ++ P       +R+ I + D  K   + F        ++AN P +     L     ++
Sbjct: 274 SLNELPASMSHLKDRVTIYRRDFQKKLTQDFSQFDG---VLANPPRSGLMGFLNPLKSLA 330

Query: 140 ADTWPPFWESLTLLFQKE 157
            +  P F+  ++   +  
Sbjct: 331 PEQRPEFFIYMSCYPESM 348


>gi|161526070|ref|YP_001581082.1| methyltransferase small [Burkholderia multivorans ATCC 17616]
 gi|189349215|ref|YP_001944843.1| methylase [Burkholderia multivorans ATCC 17616]
 gi|160343499|gb|ABX16585.1| methyltransferase small [Burkholderia multivorans ATCC 17616]
 gi|189333237|dbj|BAG42307.1| methylase [Burkholderia multivorans ATCC 17616]
          Length = 377

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +V+  ++D +     ++   +  +  R+
Sbjct: 190 VARAPLPATSLAFDIGTGTGVLAAVLASRGVERVVATDQDPRALACARENLERLGYAGRV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++++ D         F       ++ N P+
Sbjct: 250 DVVEAD--------LFPPGRAPLVVCNPPW 271


>gi|328788522|ref|XP_001122259.2| PREDICTED: dimethyladenosine transferase 2, mitochondrial [Apis
           mellifera]
          Length = 297

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           V+E+  G G LT+ LL  G   + + E    F+  L ++    PNR+ I + + LK+   
Sbjct: 4   VVELNPGYGLLTKDLLQAGINCIHLYENRNMFYSELYNLQKIFPNRVIITKANFLKI--S 61

Query: 111 KFFNISSPIRIIANLPYNIGTR 132
           K   I   ++    L  N+  R
Sbjct: 62  KLLYIPDKLKYFNELFNNVSKR 83


>gi|134278038|ref|ZP_01764753.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           305]
 gi|134251688|gb|EBA51767.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           305]
          Length = 214

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +   VIE+GAG G  T+ LL+ G  A +++++E D  F   L+         L ++  
Sbjct: 39  PGESARVIELGAGTGVFTRELLSRGVAADRLVLVEADPVFAATLRRRFPA----LRVMNI 94

Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126
           DA ++      F  +    +++ LP
Sbjct: 95  DAAELGITHGLFGDARASTVVSGLP 119


>gi|325114050|emb|CBZ49608.1| protein arginine methyltransferase, related [Neospora caninum
           Liverpool]
          Length = 675

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 78/215 (36%), Gaps = 30/215 (13%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-- 94
           + I E+    +G  V+++GAG G L+      GA+KV  +E        L  +   +P  
Sbjct: 244 RAIVENRADFEGKVVMDVGAGSGILSFFAAQAGAKKVYAVEA-SNMAATLALLCQGNPVL 302

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT-----RLLFNWISADTW----- 143
            NR++II         E   +   P ++   +   IGT     R++  ++SA        
Sbjct: 303 GNRIQIINK-----PLESIEDSEVPEKVDVLISEPIGTLLFNERMIETYLSARDRFLKPG 357

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT-KATMMFDISPHVFFPSPKVT 202
              + S   L+     + +    +  +       T +     +   +++    F  P V 
Sbjct: 358 GKMFPSKCSLYVAPFADYVL-HSDMMNKCNFWKQTQFCGVDLSNALEVAMVEQFRQPIVD 416

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
               +  P L   P   +     T+ +    RK+L
Sbjct: 417 ----YIDPSLLLAPAHYKEFD-FTKIS----RKSL 442


>gi|239943269|ref|ZP_04695206.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239989727|ref|ZP_04710391.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
          Length = 260

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             +A+ +G++ G  V+EIG G G  T  L   G R +  +E   +     +   ++ P  
Sbjct: 27  DDLADLAGAVPGSRVLEIGCGTGQATVPLAGRGCR-ITAVEAGPRMAATARRNLAESP-- 83

Query: 97  LEIIQDDALKVDFEKFFNISSPIRII 122
                 + +  +FE +   + P  ++
Sbjct: 84  ----AAEVVTAEFESWPLPAEPFDVV 105


>gi|298530634|ref|ZP_07018036.1| tRNA (adenine-N(1)-)-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510008|gb|EFI33912.1| tRNA (adenine-N(1)-)-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 273

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ--HP 94
           I    G   G  VIE G G G LT  L      A +V   E+ Q+F  + ++   +    
Sbjct: 86  IIIKLGIGPGCRVIEAGCGSGALTTALAWFVGDAGRVYSFERRQEFASLCRENLEKIGLE 145

Query: 95  NRLEIIQDDA-----LKVDFEKFFNISSPIRIIANLP 126
           +R++I   D      ++     F ++ +P   + ++P
Sbjct: 146 SRVQIADGDIEQGFGIEKADALFLDVRTPWEYLEHIP 182


>gi|310657947|ref|YP_003935668.1| methyltransferase [Clostridium sticklandii DSM 519]
 gi|308824725|emb|CBH20763.1| putative methyltransferase [Clostridium sticklandii]
          Length = 250

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +     ++E+G G GN+T+ LL +G  +V+ I+  +Q   +  +    + +++ +++ 
Sbjct: 33  IHNTSVNNILELGCGSGNITKHLLDMG-YEVVGIDISEQMLELAHEKLKDYEDKVILMEQ 91

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNI 129
           D  ++DFE  + I   + +     Y +
Sbjct: 92  DIRELDFE-IYEIDCILAVNDTFNYIL 117


>gi|154151900|ref|YP_001405518.1| methyltransferase type 12 [Candidatus Methanoregula boonei 6A8]
 gi|154000452|gb|ABS56875.1| Methyltransferase type 12 [Methanoregula boonei 6A8]
          Length = 291

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 87/248 (35%), Gaps = 43/248 (17%)

Query: 22  KKYMGQNFLLDLN-----ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           KK + ++F+ DLN        +I    G  +G  V+EIGAG G L+  L   G  +VI +
Sbjct: 46  KKGIKKHFIGDLNEWREQAETRI-NGMGIKNGSRVLEIGAGTGVLSVPLAARGC-EVIAV 103

Query: 77  EKDQQFFPILKDISSQHPNR-LEII---QDDALKVDFEKFFN----------ISSPIRII 122
           E        L +       R + +I    +D  + D  + ++                ++
Sbjct: 104 EPSPLMGEALTEYQRGQKTREITLIPKRWEDVTREDLGEPYDAVIASYSLMVADIGEAVL 163

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV--LTGW 180
                  GT  +F +++     P W  +     KE+         +  YG  +   L   
Sbjct: 164 KMQHACRGTTHIFWFLTQ----PLWAQVNAGVWKEI-------HGTAFYGEPTADCLWQV 212

Query: 181 RTKATMMFDIS-PHVFFPS--PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
             +  +   +S      P+  P +   V  F   +N   C       I +  F +   TL
Sbjct: 213 LYEMGIYAHLSVEGGCNPAYYPSIEEAVTEFHDRMN---CTTAEQDAILRTYFAR---TL 266

Query: 238 RQSLKRLG 245
            +S K   
Sbjct: 267 AKSEKGYF 274


>gi|329954889|ref|ZP_08295906.1| methyltransferase domain protein [Bacteroides clarus YIT 12056]
 gi|328526993|gb|EGF54004.1| methyltransferase domain protein [Bacteroides clarus YIT 12056]
          Length = 236

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHP--NRLEI 99
           +   D   ++++GAG G ++  L        I  +E D       ++     P  +R+E+
Sbjct: 33  APVQDAKRILDVGAGSGLISLQLAQRNPEAAITSVEIDPAAAAQAQENIQSSPWSHRMEV 92

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +  D  K   E  F++     I++N PY +
Sbjct: 93  VCCDFRKYHPEDRFDL-----IVSNPPYFV 117


>gi|159528151|ref|YP_001542714.1| putative methyltransferase [Fluoribacter dumoffii]
 gi|159157996|dbj|BAF92685.1| putative methyltransferase [Fluoribacter dumoffii]
          Length = 245

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 58/197 (29%), Gaps = 22/197 (11%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                   V+++G G G     +   G   V  ++ D        D +      ++ I D
Sbjct: 32  IAKNSEARVLDVGCGLGGTAHYVQKKGWGTVTGVDIDSDLI----DRAKTSYPDVQFICD 87

Query: 103 DALK---VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL---TLLFQK 156
           D LK   V  + F  I S           I  + L     +      ++         Q 
Sbjct: 88  DILKSTTVPHKSFQCIYSFSAFFCFTSQEIALKKLSQLSDSHGRLVLFDYSRPDVTPIQS 147

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
                 TA   +P Y              +   +S   +  +  V  T  +FI     + 
Sbjct: 148 PFPWSKTASHFNPIYL-----------PELKKQLSATGWRFNESVDLTE-YFIRWYTLLL 195

Query: 217 CCLESLKKITQEAFGKR 233
              E  ++   + FG+R
Sbjct: 196 HSFEQKREQVAQQFGQR 212


>gi|302545791|ref|ZP_07298133.1| protein-L-isoaspartate O-methyltransferase 2 [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463409|gb|EFL26502.1| protein-L-isoaspartate O-methyltransferase 2 [Streptomyces
           himastatinicus ATCC 53653]
          Length = 390

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 60/214 (28%), Gaps = 45/214 (21%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           + ++  +     G  V+EIG G G    L      LG+  V  IE DQ        +  +
Sbjct: 123 VARMLGALDIAAGHRVLEIGTGSGWNAALLA--QRLGSENVTSIEVDQVLAERAAKVIEE 180

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R  ++  D  +                   PY+     +    S    P  W     
Sbjct: 181 AGYRPGVVCGDGARGWEPA-------------APYDR----IIATCSVRRVPHAW----- 218

Query: 153 LFQKEVGERITAQ-KNSPHYGRL---------SVLTGWRTKATMMFDISPHVFFPSPK-- 200
           + Q  VG  I A        G L         +    +   A  M         P P   
Sbjct: 219 VQQTAVGGIIVAPLAGDFWSGALVRLEKAADGTARGRFVGGAKFM---PMRSERPRPDAP 275

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR 234
           V S          P P  L++L  +    +   R
Sbjct: 276 VDSGTGR---RGTPGPLPLDALADLGFALYAGAR 306


>gi|259416667|ref|ZP_05740587.1| protein-L-isoaspartate [Silicibacter sp. TrichCH4B]
 gi|259348106|gb|EEW59883.1| protein-L-isoaspartate [Silicibacter sp. TrichCH4B]
          Length = 217

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
              L K+ ++        V+++  G G  T ++  L A+ VI +E+D+      ++  S 
Sbjct: 64  PRTLAKMLDALDVRQDELVLDVACGLGYSTAVVARL-AQMVIGVEEDESLAAEAQETLSN 122

Query: 93  HPNRLEIIQDDALK 106
                 I+   AL 
Sbjct: 123 SSADNAIVHQGALT 136


>gi|118442974|ref|YP_878516.1| hypothetical protein NT01CX_0007 [Clostridium novyi NT]
 gi|118133430|gb|ABK60474.1| conserved hypothetical protein [Clostridium novyi NT]
          Length = 186

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 11/153 (7%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI 89
              + +K+           ++E G G G  T  ++        +++IE +  F+  L+  
Sbjct: 24  SKYLARKMVNKIDFKTAKYIVEYGPGTGVFTDEIIKRKTENTILLLIEYNTNFYNELEKR 83

Query: 90  SSQHPNRLEIIQDDALKVD-FEKFFNISSPIRIIANLPY-----NIGTRLLFN-WISADT 142
            +   N L II   A  +D + K FNI     +++ LP+     +I + +L         
Sbjct: 84  YTDIEN-LYIINGSAENIDEYLKDFNIPYIDYVVSGLPFASLPRSISSNILRKTMCLLKR 142

Query: 143 WPPFWESLTLLFQKEVGERITAQKN-SPHYGRL 174
              F      LF K+   R  +  N +  Y  +
Sbjct: 143 NGKFITFQYTLFMKDYINRYFSYININKEYRNI 175


>gi|126440064|ref|YP_001059914.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           668]
 gi|126453499|ref|YP_001067202.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           1106a]
 gi|167720681|ref|ZP_02403917.1| hypothetical protein BpseD_16852 [Burkholderia pseudomallei DM98]
 gi|167739666|ref|ZP_02412440.1| hypothetical protein Bpse14_16497 [Burkholderia pseudomallei 14]
 gi|167816874|ref|ZP_02448554.1| hypothetical protein Bpse9_17172 [Burkholderia pseudomallei 91]
 gi|167825285|ref|ZP_02456756.1| hypothetical protein Bpseu9_16568 [Burkholderia pseudomallei 9]
 gi|167846777|ref|ZP_02472285.1| hypothetical protein BpseB_15965 [Burkholderia pseudomallei B7210]
 gi|167895364|ref|ZP_02482766.1| hypothetical protein Bpse7_16582 [Burkholderia pseudomallei 7894]
 gi|167912014|ref|ZP_02499105.1| hypothetical protein Bpse112_16088 [Burkholderia pseudomallei 112]
 gi|167919989|ref|ZP_02507080.1| hypothetical protein BpseBC_15689 [Burkholderia pseudomallei
           BCC215]
 gi|237813326|ref|YP_002897777.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           MSHR346]
 gi|242316932|ref|ZP_04815948.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           1106b]
 gi|254181078|ref|ZP_04887676.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           1655]
 gi|254192272|ref|ZP_04898761.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254259343|ref|ZP_04950397.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           1710a]
 gi|126219557|gb|ABN83063.1| putative phospholipid N-methyltransferase PmtA [Burkholderia
           pseudomallei 668]
 gi|126227141|gb|ABN90681.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           1106a]
 gi|157987467|gb|EDO95243.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184211617|gb|EDU08660.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           1655]
 gi|237505836|gb|ACQ98154.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           MSHR346]
 gi|242140171|gb|EES26573.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           1106b]
 gi|254218032|gb|EET07416.1| phospholipid N-methyltransferase PmtA [Burkholderia pseudomallei
           1710a]
          Length = 214

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +   VIE+GAG G  T+ LL+ G  A +++++E D  F   L+         L ++  
Sbjct: 39  PGESARVIELGAGTGVFTRELLSRGVAADRLVLVEADPAFAATLRRRFPA----LRVMNI 94

Query: 103 DALKV-DFEKFFNISSPIRIIANLP 126
           DA ++      F  +    +++ LP
Sbjct: 95  DAAELGITHGLFGDARASTVVSGLP 119


>gi|170092569|ref|XP_001877506.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647365|gb|EDR11609.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 420

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 110/323 (34%), Gaps = 71/323 (21%)

Query: 30  LLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLTLG---ARKVIVIEKDQQFFP 84
           L + N    +A +       G  +IE   GPG LT+ LL L     +K+IV+E +  +  
Sbjct: 90  LRNPNTTDALANALVPEGSLGKVIIESDPGPGQLTRSLLKLPRERIKKLIVLEPNNLYLQ 149

Query: 85  ILKDISSQHPNRLEIIQ------------------DDALKVDFEKFFNISSPIRIIANLP 126
            +K + +   +R+ I +                  DD LKV +     +   +  I ++P
Sbjct: 150 YIKPLQA-IDDRVVIYEQSGYEWGVYNKLEDAGELDDVLKVPWTS--GVHPQLAFITHIP 206

Query: 127 YNIGTRLLFNWISADTWPPFWE------SLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
             +    L   +        W        L  +    + +R+ A        ++ V+   
Sbjct: 207 TTVLGEQLIAQLFRGIPDRQWLFQYGRVPLCFMMSSRMWKRLDAPMGGTQRCKVGVMGAA 266

Query: 181 RTKATMM--------FD-----ISPHVFFPSPK--VTS-------TVIHFIPHL--NPIP 216
            ++ T +        F      +    + P P     S        V+  +P       P
Sbjct: 267 TSEITELLPYEATQPFKDHFHPVPYAKYAPVPSKHPDSRRVGNPYQVVLTVPREFQAIQP 326

Query: 217 CCLESLKKITQEAFGKRRKTLRQSLKRLGG-----ENLLHQAGIETN----LR--AENLS 265
             L+      ++ F ++   L+ S+  LG         L    +  +    +R    +L+
Sbjct: 327 GHLDYWDYCLRKMFVQKATPLKASINSLGPGATTLLKKLTDHNLPPSEQVDIRKCPNSLN 386

Query: 266 IEDFCRITNILTD----NQDIAI 284
           + ++  +     +     +D+AI
Sbjct: 387 VHEWSLLVKAFMEWPFAPEDLAI 409


>gi|12054960|emb|CAC20916.1| adenine methylase [Staphylococcus intermedius]
          Length = 48

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
          QNF+     +K+I   +       VIEIG+G G+ T+ L
Sbjct: 10 QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKEL 48


>gi|34495689|ref|NP_899904.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Chromobacterium violaceum ATCC 12472]
 gi|34101544|gb|AAQ57913.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Chromobacterium violaceum ATCC 12472]
          Length = 219

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            ++ + +       ++EIG G G LT +L  +G ++V+ +E D 
Sbjct: 67  ARLVQDAAIQPSDKILEIGTGSGYLTALLAKMG-KQVVSVEIDP 109


>gi|194290563|ref|YP_002006470.1| methyltransferase, methylase of polypeptide chain release factors
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224398|emb|CAQ70409.1| putative methyltransferase, putative Methylase of polypeptide chain
           release factors [Cupriavidus taiwanensis LMG 19424]
          Length = 385

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 42  SSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLE 98
           ++  L   T+  +IG G G L  +L   G  +V+  ++D +     ++  ++  +  ++E
Sbjct: 200 AAEPLPATTLAFDIGTGTGVLAAVLARRGVHRVVATDQDARALACARENIARLGYAAQVE 259

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +I+ D         F       ++ N P+
Sbjct: 260 VIEAD--------LFPAGRAPLVVCNPPW 280


>gi|229490054|ref|ZP_04383907.1| putative methyltransferase [Rhodococcus erythropolis SK121]
 gi|229323155|gb|EEN88923.1| putative methyltransferase [Rhodococcus erythropolis SK121]
          Length = 372

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             S+      +  +IG G G L  +L   G + V   ++D +     +   S+  + +++
Sbjct: 186 VASAPLPSTESAFDIGTGTGVLAAVLAQRGVKAVTATDQDPRALQCARSNLSRLGYGDQV 245

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            +++ D         F   +   ++ N P+
Sbjct: 246 TVVEAD--------LFPEGTAPLVVCNPPW 267


>gi|327287478|ref|XP_003228456.1| PREDICTED: UPF0431 protein C1orf66 homolog [Anolis carolinensis]
          Length = 542

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 18/129 (13%)

Query: 19  IIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           + PKK      +GQ       ++K+    S       V+++G+G G+L++ L       V
Sbjct: 131 VKPKKQHEIQRLGQ-------VVKR---LSDLTGCQQVVDVGSGQGHLSRFLAFGLNLPV 180

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             +E D +          +    L++++ D      +  F+  +P  ++  +        
Sbjct: 181 TALEGDARLASQAAKFDQEL---LQVLKKDCNSTQVQDDFSRKAPCHMVGWVDPRAPWPE 237

Query: 134 LFNWISADT 142
               +  + 
Sbjct: 238 FIRLLQPEK 246


>gi|323489278|ref|ZP_08094510.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Planococcus
           donghaensis MPA1U2]
 gi|323397165|gb|EGA89979.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Planococcus
           donghaensis MPA1U2]
          Length = 211

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 9/82 (10%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL    IL+ +AE++       VIE G G GNLT+ LL     +V+ +E +Q      + 
Sbjct: 31  FLKYNEILQAVAEAA-IGP---VIEFGVGTGNLTKKLLERN-LEVVGVEPNQAM----RQ 81

Query: 89  ISSQHPNRLEIIQDDALKVDFE 110
           +++Q    L +I  D L+ D  
Sbjct: 82  VAAQKMPDLPVIDGDFLEFDTP 103


>gi|225858641|ref|YP_002740151.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae 70585]
 gi|225721043|gb|ACO16897.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae 70585]
          Length = 193

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KKI +              G TV+++G G G L   L      + 
Sbjct: 21  LGQKMTFLTDAGVFSKKIVDFGSQLLLKCLEVNQGETVLDVGCGYGPLGLSLAKAYGVQA 80

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +  +   E  F+      +I+N P   G ++
Sbjct: 81  TMVDINTRALDLARRNAEKNNAKATIFQSNIYE-QVEGHFD-----HVISNPPIRAGKQV 134

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +     +LT++ QK
Sbjct: 135 VHEIIEKSKDFLETGGNLTIVIQK 158


>gi|317495739|ref|ZP_07954104.1| hypothetical protein HMPREF0432_00706 [Gemella moribillum M424]
 gi|316914192|gb|EFV35673.1| hypothetical protein HMPREF0432_00706 [Gemella moribillum M424]
          Length = 215

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 13/146 (8%)

Query: 35  ILKKI-----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           I+ KI      +         ++EIG   G  +  L       V  IE+D + +   K  
Sbjct: 37  IIDKIGIRFLIQMLKIKKAKNLLEIGTAIGYTSIKLAEKIGCNVTTIERDDKMYNEAKKN 96

Query: 90  SSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
             +    +++ ++  DAL++  E   N    I  I        +R  F        P F 
Sbjct: 97  IEKRNLNDKITLLHADALELQDEVIKNAPYDIVFIDGAKSQ--SRKFFELYE----PYFS 150

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGR 173
           + + ++    + + + A  +   + R
Sbjct: 151 DDVVIITDNVLFKGMVADPSIIRHSR 176


>gi|294339537|emb|CAZ87896.1| putative Protein-L-isoaspartate (D-aspartate) O-methyltransferase
           [Thiomonas sp. 3As]
          Length = 216

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  +I +         V+EIGAG G +   LL   A  V  +E  ++   +
Sbjct: 57  GQNMLA-PKVEARILQELAVRKDEWVLEIGAGSGFM-AALLGHRAAAVQTLEIHEELVTM 114

Query: 86  LK-DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            + ++     N + + Q D         F++      +A +P ++  RL
Sbjct: 115 ARANLQRAGMNNVTVEQADGAHYAKSAEFDVIVLSGSVAQIPQDLLQRL 163


>gi|228917727|ref|ZP_04081268.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228841964|gb|EEM87070.1| RRNA adenine dimethylase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 198

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 10/132 (7%)

Query: 34  NILKK-IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDIS 90
           NIL K + ++        ++E+G G G+ T+ ++    ++   I+IE ++ FF  L+   
Sbjct: 31  NILAKAMVDAIDFEVAKCIVELGPGTGSFTKEIMKRKKKRTTFILIEINEVFFKKLQKQY 90

Query: 91  SQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNI----GTRLLFNWISADTWP 144
               + + +I   A  ++   E+         +      ++     +R+L N + +    
Sbjct: 91  EDDASVV-VIHGSAENIQRYMEELQINGVDYVLSGLPFTSLPKEESSRILNNVMESLREN 149

Query: 145 PFWESLTLLFQK 156
             + +      K
Sbjct: 150 GKFITFQYSLVK 161


>gi|254442829|ref|ZP_05056305.1| Methyltransferase domain family [Verrucomicrobiae bacterium
          DG1235]
 gi|198257137|gb|EDY81445.1| Methyltransferase domain family [Verrucomicrobiae bacterium
          DG1235]
          Length = 253

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
          + K+  S       T+ EIG+G G LT++LL  G   V  IE ++      + + + H
Sbjct: 27 IDKLVSSCRITPATTIAEIGSGTGILTKLLLERG-LSVQAIEPNRPMREAAERLLASH 83


>gi|159040404|ref|YP_001539657.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Salinispora arenicola CNS-205]
 gi|157919239|gb|ABW00667.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Salinispora arenicola CNS-205]
          Length = 409

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 41  ESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           E+     G+TV+EIG G G    L   LL   A  V  ++ D                R 
Sbjct: 105 EALDLQPGMTVLEIGTGTGYNAALLAHLLGDEA--VTSVDIDPHLVTTATTALHHAGYRP 162

Query: 98  EIIQDDAL 105
            ++  D L
Sbjct: 163 TVVAADGL 170


>gi|78063701|ref|YP_373609.1| phospholipid N-methyltransferase-like [Burkholderia sp. 383]
 gi|77971586|gb|ABB12965.1| Phospholipid N-methyltransferase-like protein [Burkholderia sp.
           383]
          Length = 196

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
              + +++A++    DG  V+E+G G G +T  LL  G   R+++V+E+   F   L+  
Sbjct: 31  SRQLAREMADAVPDGDG-LVVELGGGTGAITAALLERGVAPRRLVVVERSPAFVQHLRRR 89

Query: 90  SSQHPNRLEIIQDDA 104
                  + I+  DA
Sbjct: 90  FPG----ISIVSGDA 100


>gi|170743068|ref|YP_001771723.1| methyltransferase type 12 [Methylobacterium sp. 4-46]
 gi|168197342|gb|ACA19289.1| Methyltransferase type 12 [Methylobacterium sp. 4-46]
          Length = 269

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           ++I  +S +     V+EIG G G  T+ +L     +V   E    F   L+    +   R
Sbjct: 49  RRIVGTSDAAGWREVVEIGPGSGKYTEWVLARSPARVTAYEISAAFLDALRQRCGEAAAR 108

Query: 97  LEIIQDDALKVDFEK 111
             +   DA  +D+  
Sbjct: 109 GRL---DARLIDWTD 120


>gi|84684761|ref|ZP_01012661.1| hypothetical protein 1099457000245_RB2654_02594 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667096|gb|EAQ13566.1| hypothetical protein RB2654_02594 [Rhodobacterales bacterium
           HTCC2654]
          Length = 184

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 11/123 (8%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQ---DDA 104
            ++EIG G G+ T+ +L  G    ++ ++E ++ F  IL+D        + ++     D 
Sbjct: 42  PIVEIGPGTGSFTREILMRGVHPSRLTLLETNENFCAILRDRFPG----VRVLNRPAQDI 97

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
            K+       + S + ++A     I   ++   +       ++  +T   +  +G  + A
Sbjct: 98  QKIGLTGIGAVVSGVPVLARP--QIQREVVGRALDVMAPTGWFSQITYSPRAPIGTAMQA 155

Query: 165 QKN 167
           +  
Sbjct: 156 ELG 158


>gi|115683005|ref|XP_001202472.1| PREDICTED: similar to transcription factor B1, mitochondrial,
           partial [Strongylocentrotus purpuratus]
 gi|115722530|ref|XP_001198728.1| PREDICTED: similar to transcription factor B1, mitochondrial,
           partial [Strongylocentrotus purpuratus]
          Length = 40

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           R+TA        RLS++     +    F I    F P P
Sbjct: 1   RLTAPPGDDQRSRLSIMAQHLCQVKQCFVIPGAAFVPKP 39


>gi|294341531|emb|CAZ89948.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Thiomonas sp. 3As]
          Length = 224

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 49  ITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             VIE+GAG G  T+ L+  G     ++V+E+D     +L+         L++IQ DA
Sbjct: 61  QRVIELGAGTGAFTRALIEHGLHCANLLVVERDASLHGLLRQRFPD----LQLIQADA 114


>gi|313499372|gb|ADR60738.1| Trans-aconitate 2-methyltransferase [Pseudomonas putida BIRD-1]
          Length = 258

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ 92
             ++ +  +         I++G GPGN T++LL      +V  ++ D       ++    
Sbjct: 17  RAVRDLIAAIPPRPVRHAIDLGCGPGNSTEVLLQRYPDAQVTALDSDPDMIDKARERKRL 76

Query: 93  HPNRLEIIQDDA 104
              R+  +  D 
Sbjct: 77  CIPRVRTVIADI 88


>gi|301310635|ref|ZP_07216574.1| methyltransferase domain protein [Bacteroides sp. 20_3]
 gi|300832209|gb|EFK62840.1| methyltransferase domain protein [Bacteroides sp. 20_3]
          Length = 193

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D   ++ I + +       ++++G G G L   LL    R+++ I+   Q     +   
Sbjct: 21  HDPEKIRTILDRTNLRRNARILDVGCGTGILESYLLPYEPRQIVAIDIAGQMIEKARVKY 80

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
             HP  +E +Q+DA+    + F      I + +  P+ +    L  
Sbjct: 81  PDHPL-IEFLQEDAMSYKGKGF----DYIILYSAYPHFMRPERLIK 121


>gi|296106288|ref|YP_003617988.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295648189|gb|ADG24036.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 208

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           I +S       TV+E+G G G +T  LL+   +KVI I+   +F    K    +H  N +
Sbjct: 60  ILQSLDLKGHETVLEVGTGTGFMT-ALLSKLCKKVISIDYYSEFTTNAKRKLEEHNCNNV 118

Query: 98  EIIQDDALKVDFE 110
           E+I  DA +   E
Sbjct: 119 ELITGDACRGWLE 131


>gi|55378762|ref|YP_136612.1| hypothetical protein rrnAC2049 [Haloarcula marismortui ATCC 43049]
 gi|55231487|gb|AAV46906.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 261

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 56/201 (27%), Gaps = 45/201 (22%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDDA- 104
           +G   +E GAG GN T  LL  GA++V  +  D      ++D    ++ +RL +I+ D  
Sbjct: 38  EGRVCLEAGAGVGNTTAGLLAAGAKRVYAVTNDADHAATVRDRIGDRNADRLAVIEADLR 97

Query: 105 ---LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
              L  D            +   LP      +                        V + 
Sbjct: 98  ATPLATDSVDLVAAHG---LCNVLPPAELAPIAAELTRVAKPDGCL----------VVDD 144

Query: 162 ITAQKNSPHYGRLSVLTGWRTKA---TMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
                      RL  L     +      +        F  P V   V             
Sbjct: 145 YAVPPADAAVNRLFALENAAARVVDGRPVLT------FYPPAVLVAV---------FAAN 189

Query: 219 LESLKKITQEAFGKRRKTLRQ 239
             S++         RRKTL  
Sbjct: 190 GWSVE---------RRKTLLN 201


>gi|323699131|ref|ZP_08111043.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfovibrio sp.
           ND132]
 gi|323459063|gb|EGB14928.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfovibrio
           desulfuricans ND132]
          Length = 384

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I +      G  V++IG G G L + +       V+ +   ++     ++  +  P  
Sbjct: 158 RLICDKLDLQPGDRVLDIGCGWGGLARFMAEERGCSVVGVNISKRQIAFGREFCAGLP-- 215

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +EI + D  +++ E F  I S        P N  T
Sbjct: 216 VEIREQDYRRLN-ESFDKIVSVGMFEHVGPKNYAT 249


>gi|291446742|ref|ZP_06586132.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291349689|gb|EFE76593.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 282

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             +A+ +G++ G  V+EIG G G  T  L   G R +  +E   +     +   ++ P  
Sbjct: 49  DDLADLAGAVPGSRVLEIGCGTGQATVPLAGRGCR-ITAVEAGPRMAATARRNLAESP-- 105

Query: 97  LEIIQDDALKVDFEKFFNISSPIRII 122
                 + +  +FE +   + P  ++
Sbjct: 106 ----AAEVVTAEFESWPLPAEPFDVV 127


>gi|57641263|ref|YP_183741.1| tRNA (1-methyladenosine) methyltransferase [Thermococcus
           kodakarensis KOD1]
 gi|57159587|dbj|BAD85517.1| tRNA (1-methyladenosine) methyltransferase [Thermococcus
           kodakarensis KOD1]
          Length = 253

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88
            D  I   I   +G   G TVIE GAG G LT  L        KVI  E  + F+ I K 
Sbjct: 80  KDAGI---IIAYAGISPGDTVIEAGAGSGALTIFLANAVGPTGKVISYEVRKDFYEIAKK 136

Query: 89  --ISSQHPNRLEI 99
               +   +R+ +
Sbjct: 137 NVELAGFSDRVVL 149


>gi|223985771|ref|ZP_03635815.1| hypothetical protein HOLDEFILI_03121 [Holdemania filiformis DSM
           12042]
 gi|223962281|gb|EEF66749.1| hypothetical protein HOLDEFILI_03121 [Holdemania filiformis DSM
           12042]
          Length = 256

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 12/137 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + + ES  +     ++EIG G G  TQ +L  G   +  +E  +     ++    Q P R
Sbjct: 27  QDVIESFHAGTQSRIMEIGIGTGQATQPILDTGCD-LTAVELGENLARFVRGKFKQAP-R 84

Query: 97  LEIIQDDALKVDFEK----------FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
            ++I  D ++++  +           F+   P   +  +   +  +          +P  
Sbjct: 85  FQVILGDFMELELAENSWDGIYSATAFHWLPPEAALEKVLRLLKPQGCLALFWNHPYPNR 144

Query: 147 WESLTLLFQKEVGERIT 163
            E L+    +EV ++  
Sbjct: 145 LEDLSNRINREVYQQFC 161


>gi|84503522|ref|ZP_01001573.1| hypothetical protein OB2597_03444 [Oceanicola batsensis HTCC2597]
 gi|84388012|gb|EAQ01060.1| hypothetical protein OB2597_03444 [Oceanicola batsensis HTCC2597]
          Length = 185

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 20/135 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + +K+ E   +++G  ++EIG G G+ T+ +L  G    ++I++E + +F   L      
Sbjct: 29  VARKMTEGVENVEG-PIVEIGPGTGSFTKAILERGVAPERLILMELNPRFCEELARKFPG 87

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIR-------------IIANLPYNIGTRLLFNWIS 139
               + ++   A +++   F N+   I              ++      +    +F  I+
Sbjct: 88  ----VTVLNRPAQEIENIGFSNLGCVISGVPVLARPQIQREVVGRAFNVMAPDGVFVQIT 143

Query: 140 ADTWPPFWESLTLLF 154
                P  E + +  
Sbjct: 144 YSPNAPIPEDVQIDM 158


>gi|148360648|ref|YP_001251855.1| protein-L-isoaspartate-O-methyltransferase [Legionella pneumophila
           str. Corby]
 gi|148282421|gb|ABQ56509.1| protein-L-isoaspartate-O-methyltransferase [Legionella pneumophila
           str. Corby]
          Length = 216

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           I +S       TV+E+G G G +T  LL+   +KVI I+   +F    K    +H  N +
Sbjct: 68  ILQSLDLKGHETVLEVGTGTGFMT-ALLSKLCKKVISIDYYSEFTTNAKRKLEEHNCNNV 126

Query: 98  EIIQDDALKVDFE 110
           E+I  DA +   E
Sbjct: 127 ELITGDACRGWLE 139


>gi|323136959|ref|ZP_08072039.1| ribosomal RNA adenine methylase transferase [Methylocystis sp. ATCC
           49242]
 gi|322397720|gb|EFY00242.1| ribosomal RNA adenine methylase transferase [Methylocystis sp. ATCC
           49242]
          Length = 205

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDIS 90
             + + +A          ++E+G G G +T+ LL  G    +++++E + +F  +L++  
Sbjct: 35  PALARTMASFVDLDREGPIVELGPGTGPVTKALLARGIEPERLVLVEYEGRFCHMLEER- 93

Query: 91  SQHPNRLEIIQDDA 104
             +P  ++IIQ DA
Sbjct: 94  --YPG-VKIIQGDA 104


>gi|297619228|ref|YP_003707333.1| hypothetical protein Mvol_0701 [Methanococcus voltae A3]
 gi|297378205|gb|ADI36360.1| hypothetical protein Mvol_0701 [Methanococcus voltae A3]
          Length = 292

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 28  NFLLDLNILKKIAESS-------GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           + L + N+ K I  +              +++EIG GPG  T  L  +  + + V+E   
Sbjct: 47  HILTNENLNKDIKRNVEKFKKVFNLDKNTSILEIGPGPGTYTIPLAKI-VKHITVVEPST 105

Query: 81  QFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
               I LK    +  N + +I     + D  + +N      ++
Sbjct: 106 GMSNILLKRAKEEVINNITVINK---RWDDVELYNDFEKHDLV 145


>gi|63109084|gb|AAY33698.1| SbfI modification methyltransferase [Streptomyces sp. Bf-61]
          Length = 486

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 7   SHSLKTILSHYKIIPKKY--MGQNF--LLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           S   +   +  K+ P     +GQ F  +    ++  +         + V++ GAG G+LT
Sbjct: 6   STETRRQAALGKLDPTTQAVLGQFFTPMKAATLMASMLRVDDLRGTVRVLDPGAGVGSLT 65

Query: 63  QMLLTL-------GARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEK 111
             L+          A  V+ +E D    P L+    +    +    ++++ D L     K
Sbjct: 66  AALVDRLHTERPDVAVHVVAVETDPFVVPYLRATLEECRNAYGISYDLVEGDYLLNQGAK 125

Query: 112 FFNISSPIRIIANLPY-NIGTRLLFNW 137
                    +IAN PY  + +  L   
Sbjct: 126 L--DGPFDLVIANPPYGKLASDSLARL 150


>gi|326202932|ref|ZP_08192799.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
 gi|325987009|gb|EGD47838.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
          Length = 244

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD--ISSQHPNRL 97
           + +       V++IG G G +  +L     A K++ +E  ++   +       +Q   RL
Sbjct: 38  DFADVKRNSKVLDIGTGTGIIPVLLAGKTKAAKIVGLEIQEEMAEMASRSVTLNQLSERL 97

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           EI+Q D     + ++F  SS   +++N PY 
Sbjct: 98  EIVQGDI--KLYREYFGKSSFDVVVSNPPYT 126


>gi|261855190|ref|YP_003262473.1| phosphatidylethanolamine N-methyltransferase [Halothiobacillus
           neapolitanus c2]
 gi|261835659|gb|ACX95426.1| phosphatidylethanolamine N-methyltransferase, putative
           [Halothiobacillus neapolitanus c2]
          Length = 187

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + +++A      +G  VIE+G G G +T+ LL  G     +I++E+   F  +L+     
Sbjct: 31  LARQMAALVPDGEG-KVIELGPGSGPMTRALLKRGIKPDDLILVERTDSFAQLLRQRFPG 89

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
               L II  DA  +        +    I+++LP
Sbjct: 90  ----LNIIHGDACGLSQLLSGIEAPIRAIVSSLP 119


>gi|312110131|ref|YP_003988447.1| methyltransferase type 11 [Geobacillus sp. Y4.1MC1]
 gi|311215232|gb|ADP73836.1| Methyltransferase type 11 [Geobacillus sp. Y4.1MC1]
          Length = 215

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I  +  S     V+E G G GNLT+ LL  G + V  IE  +      ++   +H   
Sbjct: 35  EDILNTVASKAKNVVLEFGVGTGNLTKKLLEQG-KTVYGIEPSEPMRKKAREKLGEH--- 90

Query: 97  LEIIQDDALKVDFEK 111
           + I+  D L+     
Sbjct: 91  VPIVDGDFLQFPLPP 105


>gi|297564365|ref|YP_003683338.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848814|gb|ADH70832.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 389

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +I+  + E++    G  V+EIG G G    +L    GA  V  +E D       ++   
Sbjct: 90  PSIVALMLEATDLAAGQRVLEIGTGTGWNAALLADRAGAGNVTSVEIDPAVAARAEENLE 149

Query: 92  QHPNRLEIIQDD 103
            H   + ++  D
Sbjct: 150 GHG--VHVVLGD 159


>gi|148245000|ref|YP_001219694.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326827|dbj|BAF61970.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 217

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NR 96
           ++  +       TV+EIG G G LT +L  L  + V  IE D+      K        + 
Sbjct: 68  RLLNALNIKKHETVLEIGTGSGYLTAVLSKLC-KSVTSIEIDENLSHNAKKRIDTLGIDN 126

Query: 97  LEIIQDDALKVD-FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           + +   DA K   +  FFN+   + I +++P    T   F+ ++        E 
Sbjct: 127 VTLEVVDASKNWKYNDFFNV---VIISSSVPKI--TGYYFHLLNIGGRIFVIEG 175


>gi|20094473|ref|NP_614320.1| precorrin-6B methylase [Methanopyrus kandleri AV19]
 gi|19887569|gb|AAM02250.1| Precorrin-6B methylase [Methanopyrus kandleri AV19]
          Length = 188

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH--PNR 96
                  G  ++EIGAG G+LT  L        +V  +E D++ F  L+         +R
Sbjct: 29  AVLRPRPGERILEIGAGSGSLTLELARAVGPLGRVYAVEGDKEAFRSLERNVRDFCLEDR 88

Query: 97  LEIIQD 102
           +EI++ 
Sbjct: 89  IEIVRG 94


>gi|145592749|ref|YP_001157046.1| methyltransferase type 11 [Salinispora tropica CNB-440]
 gi|145302086|gb|ABP52668.1| Methyltransferase type 11 [Salinispora tropica CNB-440]
          Length = 223

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + +K+ + +    G  ++EIG G G+L + L    +  V V+  D     + +     
Sbjct: 37  RRVHEKLLDRANIRPGQRILEIGCGTGDLLRTLKQRHSD-VEVLGIDPDLSALRRARRKA 95

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             ++L+I         +E+ F    P  +  +    + +  + + ++   W P +  +
Sbjct: 96  ARSKLQI--------QYERAFADDLP--LSDDSVDRVLSSFMLHHLAVAEWAPVFREV 143


>gi|327193599|gb|EGE60486.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase protein
           [Rhizobium etli CNPAF512]
          Length = 220

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL++ + L K+ + +       V+E+G G G  T  LL++ A  VI +E D+      K 
Sbjct: 65  FLMEASPLAKLLQLAAISKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDEGLAAEAKA 123

Query: 89  ISSQHPNRLEIIQD 102
             + +  ++E++  
Sbjct: 124 KLAGY-GKVEVVTG 136


>gi|190891498|ref|YP_001978040.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium
           etli CIAT 652]
 gi|190696777|gb|ACE90862.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase protein
           [Rhizobium etli CIAT 652]
          Length = 221

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL++ + L K+ + +       V+E+G G G  T  LL++ A  VI +E D+      K 
Sbjct: 66  FLMEASPLAKLLQLAAISKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDEGLAAEAKA 124

Query: 89  ISSQHPNRLEIIQD 102
             + +  ++E++  
Sbjct: 125 KLAGY-GKVEVVTG 137


>gi|299538454|ref|ZP_07051737.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Lysinibacillus fusiformis ZC1]
 gi|298726041|gb|EFI66633.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Lysinibacillus fusiformis ZC1]
          Length = 190

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
              +  K+ +         +IE+G G G  T+ L+     A  +++IE +  F   L+  
Sbjct: 24  SKKLAHKMVQPICFETAQCIIELGPGMGAFTKELVKRKKPATLLVLIEHNAIFCEKLRRQ 83

Query: 90  SSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            +   N + +I   A  LK       NI +   +I+ LP+      +   I  +     +
Sbjct: 84  FAHVANVV-VIHGSAENLKQYLTNL-NIENIDYVISGLPFTSLKAEVSCCILRNVRDCLY 141

Query: 148 ESLTLLFQKEVGER 161
               + FQ  + ++
Sbjct: 142 NGKFITFQYSLVKK 155


>gi|168187723|ref|ZP_02622358.1| ribosomal RNA adenine dimethylase [Clostridium botulinum C str.
           Eklund]
 gi|169294385|gb|EDS76518.1| ribosomal RNA adenine dimethylase [Clostridium botulinum C str.
           Eklund]
          Length = 166

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDI 89
              + KK+           ++E G G G  T  ++       ++  IE +  F+  L++ 
Sbjct: 4   SKYLAKKMINKINFNTAKYIVEYGPGTGVFTDEIIKHKNENTVILLIEYNTNFYNALREK 63

Query: 90  SSQHPNRLEIIQDDALKVD-FEKFFNISSPIRIIANLPY-----NIGTRLLFN 136
            S   N L +I   A  +D + K FNI     +++ LP+     NI + +L  
Sbjct: 64  YSDIEN-LYLINGSAENIDEYLKDFNIPYIDYVVSGLPFASLPKNISSTILRK 115


>gi|194367114|ref|YP_002029724.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Stenotrophomonas maltophilia R551-3]
 gi|194349918|gb|ACF53041.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Stenotrophomonas maltophilia R551-3]
          Length = 215

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHPNRLE 98
           ++     G  V+EIG G G L+  +  L AR V+ +E D +       +  +S     + 
Sbjct: 73  QALDLQPGDEVLEIGTGSGFLSACIGAL-ARDVLSLEIDPELAAAARARLDASGLGTNVR 131

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +   DAL    E+ F++      +  +P    +
Sbjct: 132 VEVADALAWQTERRFDVICVTGAVDVVPSQFAS 164


>gi|329767536|ref|ZP_08259059.1| hypothetical protein HMPREF0428_00756 [Gemella haemolysans M341]
 gi|328835870|gb|EGF85592.1| hypothetical protein HMPREF0428_00756 [Gemella haemolysans M341]
          Length = 215

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 13/146 (8%)

Query: 35  ILKKI-----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           I+ KI      +         ++EIG   G  +  L       V  IE+D + +   K+ 
Sbjct: 37  IIDKIGIRFLIQMLKVKKAKNLLEIGTAIGYTSIKLAERIGCNVTTIERDDKMYNEAKNN 96

Query: 90  SSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
             +    +++ ++  DAL++  E   N    +  I        +R  F        P F 
Sbjct: 97  IEKRNLTDKITLLHADALELQGEVITNAPYDVVFIDGAKSQ--SRKFFELYE----PYFA 150

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGR 173
           E + ++    + + + A  +   + R
Sbjct: 151 EDVVVITDNVLFKGMVADPSIIKHSR 176


>gi|297563732|ref|YP_003682706.1| protein-L-isoaspartate(D-aspartate) O-methyl transferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848180|gb|ADH70200.1| protein-L-isoaspartate(D-aspartate) O-methyl transferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 422

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKD--I 89
             +L ++ E S   +G  V+E+G G G  T +L    G   V  +E D +   + ++   
Sbjct: 141 PRVLARLLELSDLANGQRVLEVGTGTGWNTALLAHRLGDSAVTSVETDPRLAGVAREALR 200

Query: 90  SSQHPNRLEIIQD 102
           +  +   + +   
Sbjct: 201 AEGYSPAVHLADG 213


>gi|256372229|ref|YP_003110053.1| Methyltransferase type 12 [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008813|gb|ACU54380.1| Methyltransferase type 12 [Acidimicrobium ferrooxidans DSM 10331]
          Length = 248

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           + GS +G  V+E+GAG G  TQ L+  GA  V+ +E D     IL+   
Sbjct: 31 RAIGSYEGSRVVEVGAGTGIATQGLVAAGAD-VLALEPDPGMGRILRRRL 79


>gi|332715471|ref|YP_004442937.1| cyclopropane-fatty-acyl-phospholipid synthase [Agrobacterium sp.
           H13-3]
 gi|325062156|gb|ADY65846.1| cyclopropane-fatty-acyl-phospholipid synthase [Agrobacterium sp.
           H13-3]
          Length = 410

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 41/230 (17%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L +I +      G +V+EIG G G L   L T     V  +                 P+
Sbjct: 183 LNRIVDKLQLSGGESVLEIGCGWGALAIHLATQADANVTGLTL--------------SPS 228

Query: 96  RLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +L   +  A K D  +  ++     R +      I +  +F  +    WP ++E+L    
Sbjct: 229 QLNWAKAAAEKTDKAEHIDLRLEDYRDVEGKFDRIVSVEMFEAVGEAYWPSYFETLKRCL 288

Query: 155 Q---KEVGERITAQK-NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
           +   + V + I+ +     +Y R +           +F   P  F PS      +   I 
Sbjct: 289 KPGGRAVLQIISIEPARFDNYRRNADFIQ-----KYIF---PGGFLPS---DEALERAIG 337

Query: 211 HLNPIPCCLESL-----KKIT--QEAFGKRRKTLRQSLKRLGGENLLHQA 253
                    E       + +   ++ F  R     Q++  LG ++   + 
Sbjct: 338 RAGLSLADAELFGQSYARTLAEWRQRFHAR----WQTISLLGFDDRFRRL 383


>gi|318061627|ref|ZP_07980348.1| putative methyltransferase [Streptomyces sp. SA3_actG]
 gi|318075841|ref|ZP_07983173.1| putative methyltransferase [Streptomyces sp. SA3_actF]
          Length = 364

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 56/189 (29%), Gaps = 20/189 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              G  DG  V+EIG   G +  +L    G   V  IE D       + +         +
Sbjct: 99  AHLGLKDGDGVLEIGTATGYVAALLSERLGDELVHSIEIDPVLAATAQHVLDVQGYHPYL 158

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL--FNWISADTWPPFWESLTLLFQKE 157
            Q DA+           +P      + +   TR +       A         L     ++
Sbjct: 159 HQGDAVD-------GWPAPDAAFDAVLFTCATRTVPAAVLDQARPGARIVGPLIRGIGED 211

Query: 158 VGERITAQKNSPHYGRLSVLTGWR-TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
              R+  Q +    GRL+  + +   +A+    +          V S+         P+ 
Sbjct: 212 TVMRLVKQPDGSAIGRLTGSSNYMPMRASRAARVP---------VDSSTGRHSDAGRPLE 262

Query: 217 CCLESLKKI 225
              E    +
Sbjct: 263 PFTEGGFTL 271


>gi|268326075|emb|CBH39663.1| conserved hypothetical protein, SAM dependent methyltransferase
           family [uncultured archaeon]
 gi|268326206|emb|CBH39794.1| conserved hypothetical protein, SAM dependent methyltransferase
           family [uncultured archaeon]
          Length = 278

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            +++          TV++IGAGPG L   L  +  + V  I+  +     LK+
Sbjct: 52  AERMIAKLDIEPDDTVLDIGAGPGTLAIPLAKM-VKHVTAIDPSKGMLAYLKE 103


>gi|302518781|ref|ZP_07271123.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. SPB78]
 gi|302427676|gb|EFK99491.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. SPB78]
          Length = 364

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 56/189 (29%), Gaps = 20/189 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              G  DG  V+EIG   G +  +L    G   V  IE D       + +         +
Sbjct: 99  AHLGLKDGDGVLEIGTATGYVAALLSERLGDELVHSIEIDPVLAATAQHVLDVQGYHPYL 158

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL--FNWISADTWPPFWESLTLLFQKE 157
            Q DA+           +P      + +   TR +       A         L     ++
Sbjct: 159 HQGDAVD-------GWPAPDAAFDAVLFTCATRTVPAAVLDQARPGARIVGPLIRGIGED 211

Query: 158 VGERITAQKNSPHYGRLSVLTGWR-TKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
              R+  Q +    GRL+  + +   +A+    +          V S+         P+ 
Sbjct: 212 TVMRLVKQPDGSAIGRLTGSSNYMPMRASRAARVP---------VDSSTGRHSDAGRPLE 262

Query: 217 CCLESLKKI 225
              E    +
Sbjct: 263 PFTEGGFTL 271


>gi|28493020|ref|NP_787181.1| ubiquinone/menaquinone biosynthesis methyltransferase [Tropheryma
           whipplei str. Twist]
 gi|28572233|ref|NP_789013.1| ubiquinone/menaquinone methyltransferase [Tropheryma whipplei
           TW08/27]
 gi|54039804|sp|P67065|UBIE_TROW8 RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|54042288|sp|P67064|UBIE_TROWT RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|28410364|emb|CAD66750.1| putative ubiquinone/menaquinone methyltransferase [Tropheryma
           whipplei TW08/27]
 gi|28476060|gb|AAO44150.1| ubiquinone/menaquinone biosynthesis methyltransferase [Tropheryma
           whipplei str. Twist]
          Length = 239

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL D +  +   +  G   G  V+++GAG G  T+ +   GA  V  I+   +   I ++
Sbjct: 39  FLQDAHWRRAACKMLGVTAGEEVLDVGAGTGASTRTVARTGA-AVTGIDISPRMLQIARN 97

Query: 89  ISSQHPN-RLEIIQDD 103
              +  N    +   D
Sbjct: 98  RCKRFQNITWRLTNGD 113


>gi|325958741|ref|YP_004290207.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanobacterium sp.
           AL-21]
 gi|325330173|gb|ADZ09235.1| cobalt-precorrin-6Y C(15)-methyltransferase (decarboxylating)
           [Methanobacterium sp. AL-21]
          Length = 187

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           S   +   V++IG G G LT       A+KV  I+ +       ++  ++H   N++E+I
Sbjct: 29  SEVSEEDVVVDIGCGTGGLTVE-FAKKAKKVYSIDLNPLATQTTQENVNKHQVKNKVEVI 87

Query: 101 QDDALK 106
           Q D L+
Sbjct: 88  QADGLE 93


>gi|206976657|ref|ZP_03237562.1| ribosomal RNA adenine dimethylase [Bacillus cereus H3081.97]
 gi|217962578|ref|YP_002341150.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           AH187]
 gi|206745143|gb|EDZ56545.1| ribosomal RNA adenine dimethylase [Bacillus cereus H3081.97]
 gi|217066228|gb|ACJ80478.1| ribosomal RNA adenine dimethylase domain protein [Bacillus cereus
           AH187]
          Length = 192

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 16/135 (11%)

Query: 34  NILKK-IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDIS 90
           NIL K + ++        ++E+G G G+ T+ ++    ++   I+IE ++ FF  L+   
Sbjct: 25  NILAKAMVDAIDFDVAKCIVELGPGTGSFTKEIMKRKKKRTTFILIEINEVFFKKLQKQY 84

Query: 91  SQHPNRLEIIQDDA---------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
               + + +I   A         L+++   +     P     +LP    +R+L N + + 
Sbjct: 85  EDDASIV-VIHGSAENIQKYVEELQINGVDYVLSGLPF---TSLPKEESSRILNNVMESL 140

Query: 142 TWPPFWESLTLLFQK 156
                + +      K
Sbjct: 141 RENGKFITFQYSLVK 155


>gi|295399308|ref|ZP_06809290.1| Methyltransferase type 11 [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978774|gb|EFG54370.1| Methyltransferase type 11 [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 215

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I  +  S     V+E G G GNLT+ LL  G + V  IE  +      ++   +H   
Sbjct: 35  EDILNTVASKAKNVVLEFGVGTGNLTKKLLEQG-KTVYGIEPSEPMRKKAREKLGEH--- 90

Query: 97  LEIIQDDALKVDFEK 111
           + I+  D L+     
Sbjct: 91  VPIVDGDFLQFPLPP 105


>gi|312111958|ref|YP_003990274.1| RNA methylase [Geobacillus sp. Y4.1MC1]
 gi|311217059|gb|ADP75663.1| RNA methylase [Geobacillus sp. Y4.1MC1]
          Length = 672

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 22  KKYMGQNF-------LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KV 73
           +K +GQ F       LL        A  +G+   ++VI+   G G++ + +  L +  K+
Sbjct: 15  RKRLGQYFSGEKLSMLL--------ASFAGAEKCLSVIDPMCGIGDMLRAVRKLNSNAKL 66

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + I+ D +   ILK+  S   +RL +   +A   +  K         +I N PY
Sbjct: 67  VGIDIDGEVISILKENLSDFGDRLNVFWGNAFDQNIIKQLPQLEYDLVITNPPY 120


>gi|302545371|ref|ZP_07297713.1| putative O-methyltransferase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462989|gb|EFL26082.1| putative O-methyltransferase [Streptomyces himastatinicus ATCC
           53653]
          Length = 334

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++ ++    DG  V+EIGAG G    +L    G  +V  ++ D +     +   +
Sbjct: 114 PSLMARMLDALRVRDGDRVLEIGAGTGYNAALLAHRLGDARVTTVDLDPEITEAARRHLA 173

Query: 92  QHPNRLEIIQDD 103
               R  +I  D
Sbjct: 174 AAGFRPAVITGD 185


>gi|300856399|ref|YP_003781383.1| putative methyltransferase [Clostridium ljungdahlii DSM 13528]
 gi|300436514|gb|ADK16281.1| putative methyltransferase [Clostridium ljungdahlii DSM 13528]
          Length = 256

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
            I   S    G   +EIG G G  T  +L  G R V  IE        +K+    + N  
Sbjct: 28  DIINYSRISSGYEALEIGIGTGQATLPILQSGCR-VTAIELGNNLTRYVKNKFKNYMN-F 85

Query: 98  EIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            +I  D ++   + + FN+         +P   G   + N +  D     +
Sbjct: 86  NVINADFIEYTIKTEAFNLVYCATAFHWIPLEQGYVKVRNILKDDGTIALF 136


>gi|292656783|ref|YP_003536680.1| hypothetical protein HVO_2664 [Haloferax volcanii DS2]
 gi|291371985|gb|ADE04212.1| conserved hypothetical protein [Haloferax volcanii DS2]
          Length = 249

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEII 100
             + G   +E GAG GN T  LL  GA++V  +  D +   I++D  +  P    R  ++
Sbjct: 14  RPVRGAVCLEAGAGTGNATAGLLDAGAKQVYAVTNDPEHATIVRDRVAPSPTDRARTAVL 73

Query: 101 QDDA 104
           + D 
Sbjct: 74  EADV 77


>gi|295675764|ref|YP_003604288.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1002]
 gi|295435607|gb|ADG14777.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1002]
          Length = 217

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L    +  ++ +        +V+EIGAG G +   LL   A+ V+ ++ + +   +
Sbjct: 57  GQHMLA-PRVEARVLQELAVKKHESVLEIGAGSGYM-AALLAHRAQHVLTVDIEPELAEL 114

Query: 86  LK-DISSQHPNRLEIIQDDA 104
            K ++ +     +E+   DA
Sbjct: 115 AKSNLIANGVLNVEVATGDA 134


>gi|167750075|ref|ZP_02422202.1| hypothetical protein EUBSIR_01043 [Eubacterium siraeum DSM 15702]
 gi|167656948|gb|EDS01078.1| hypothetical protein EUBSIR_01043 [Eubacterium siraeum DSM 15702]
          Length = 746

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           ++  ++ G  +   V+EIG G G L   +  L       ++   +     K   SQ  N 
Sbjct: 580 QRFIDAMGLSNDKNVLEIGVGTGRLAIQVAPLC-YHFTGVDISPKTVEKAKFNLSQFEN- 637

Query: 97  LEIIQDDALKVDFEK 111
           + I+ DD L+VDFE+
Sbjct: 638 VTILCDDFLRVDFEE 652


>gi|254475254|ref|ZP_05088640.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ruegeria
           sp. R11]
 gi|214029497|gb|EEB70332.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ruegeria
           sp. R11]
          Length = 217

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL+   L K+ ++        V+++  G G  T ++  + A+ VI +E D+      +D 
Sbjct: 61  LLEPRTLAKMLDAIDVQPDELVLDVACGMGYSTAVVARV-AQMVIGVEADESLASEAQDQ 119

Query: 90  SSQHPNRLEIIQDDAL 105
            S       I+   AL
Sbjct: 120 LSAVSADNAIVHTGAL 135


>gi|298712449|emb|CBJ33224.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 217

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 13/93 (13%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + + ++    +   V+EIG G G     +     R   +IE D      L+  ++  P  
Sbjct: 95  RALVDALAITEESRVLEIGYGIGYSADRIQEFSPRSHTIIEPDPVVLARLRGWAAARPG- 153

Query: 97  LEIIQD------------DALKVDFEKFFNISS 117
           + I++             DA+  D     +   
Sbjct: 154 VRIVEGFWQTALATLGEFDAVFFDDFPLPDTPD 186


>gi|289193240|ref|YP_003459181.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
 gi|288939690|gb|ADC70445.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
          Length = 277

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108
           TV+EIG G G LT  L     +KVI IEK +    +LK+   ++    +EII  D   +D
Sbjct: 72  TVLEIGTGAGTLTIPLAKE-VKKVIAIEKSEMNIRLLKENLRENGIENVEIINADWNSID 130

Query: 109 FEKFFNI 115
            +  F++
Sbjct: 131 IDDKFDL 137


>gi|302527022|ref|ZP_07279364.1| CalE3 [Streptomyces sp. AA4]
 gi|302435917|gb|EFL07733.1| CalE3 [Streptomyces sp. AA4]
          Length = 286

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G  V ++GAG   L+ + L  GA  V  +E D +   + + I + +    ++ +IQ 
Sbjct: 30  VEPGAVVADVGAGTLALSLLALEHGAGHVYAVEADPETAALAERIVADNDLKEKVTLIQG 89

Query: 103 DA 104
           DA
Sbjct: 90  DA 91


>gi|269837716|ref|YP_003319944.1| 50S ribosomal protein L11 methyltransferase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786979|gb|ACZ39122.1| ribosomal protein L11 methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
          Length = 312

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
            ++G T+++ GAG G L+   +  GA  V  +E D      L+     +Q  +R+ +IQ 
Sbjct: 170 PVEGKTLLDAGAGSGILSIAAIARGAAHVDAVEIDPVAVKALRHNLDLNQVTDRVRVIQG 229

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           D ++V             ++AN+  N+  R       A           ++ Q+E  E +
Sbjct: 230 DVVEVVEPS----GGYDLVLANIISNVLIRAAPTLAGAARPGAPLVLSGVITQRE-AEVL 284

Query: 163 TA 164
            A
Sbjct: 285 AA 286


>gi|224418463|ref|ZP_03656469.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Helicobacter canadensis MIT 98-5491]
 gi|253827778|ref|ZP_04870663.1| ribosomal RNA adenine dimethylase [Helicobacter canadensis MIT
           98-5491]
 gi|313141995|ref|ZP_07804188.1| ribosomal RNA adenine dimethylase [Helicobacter canadensis MIT
           98-5491]
 gi|253511184|gb|EES89843.1| ribosomal RNA adenine dimethylase [Helicobacter canadensis MIT
           98-5491]
 gi|313131026|gb|EFR48643.1| ribosomal RNA adenine dimethylase [Helicobacter canadensis MIT
           98-5491]
          Length = 184

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP 94
           + +  +    +   + EIG G G  TQ +L L  +  +   IE +  F   L++      
Sbjct: 24  QAMINNIDLQNAHYIAEIGPGLGAFTQKILNLKPKESRYFAIEINPHFVKKLQEKFP--- 80

Query: 95  NRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNI 129
             +EI   +A ++    +  +I     +I+ +P+++
Sbjct: 81  -NIEIEHKNANRILSIMRSKDIQHLDAVISGIPWSL 115


>gi|222148984|ref|YP_002549941.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium vitis S4]
 gi|221735970|gb|ACM36933.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium vitis S4]
          Length = 207

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +L+D + L K+ + +       V+EIGAG G ++  LL   A  V  +E D Q     K 
Sbjct: 50  YLMDPSPLAKLLQLAEIGRSELVLEIGAGTGYVS-ALLGRLAGAVFAVESDDQLASAAKS 108

Query: 89  ISSQH-PNRLEIIQD 102
              +     + ++Q 
Sbjct: 109 NLEKLGAANVTVVQC 123


>gi|28199829|ref|NP_780143.1| protein-L-isoaspartate O-methyltransferase [Xylella fastidiosa
           Temecula1]
 gi|71275212|ref|ZP_00651499.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Xylella
           fastidiosa Dixon]
 gi|71899567|ref|ZP_00681723.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Xylella
           fastidiosa Ann-1]
 gi|170731207|ref|YP_001776640.1| protein-L-isoaspartate O-methyltransferase [Xylella fastidiosa M12]
 gi|182682580|ref|YP_001830740.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Xylella
           fastidiosa M23]
 gi|28057950|gb|AAO29792.1| protein-L-isoaspartate O-methyltransferase [Xylella fastidiosa
           Temecula1]
 gi|71164021|gb|EAO13736.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Xylella
           fastidiosa Dixon]
 gi|71730696|gb|EAO32771.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Xylella
           fastidiosa Ann-1]
 gi|167966000|gb|ACA13010.1| protein-L-isoaspartate O-methyltransferase [Xylella fastidiosa M12]
 gi|182632690|gb|ACB93466.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Xylella
           fastidiosa M23]
 gi|307578862|gb|ADN62831.1| L-isoaspartate protein carboxylmethyltransferase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 218

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 8/132 (6%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPN 95
           ++ ++        V+EIG G G LT  L +LG  +V+ +E +       +         +
Sbjct: 70  RLLQALMLSPEEDVLEIGTGSGFLTACLASLG-HEVVSLEINSALAASARTHLDTIGLGS 128

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            + I Q DA     E+ F++      ++ LP          W+  +         +   Q
Sbjct: 129 NVHIEQADAFTWQPERQFSVICLTGAVSTLPLQ-----FLQWLHPNGRMFAIHGHSPAMQ 183

Query: 156 KEVGERITAQKN 167
             +     +  N
Sbjct: 184 AVLVRGDASTPN 195


>gi|117928389|ref|YP_872940.1| tRNA (adenine-N(1)-)-methyltransferase [Acidothermus cellulolyticus
           11B]
 gi|117648852|gb|ABK52954.1| tRNA (adenine-58-N(1)-) methyltransferase [Acidothermus
           cellulolyticus 11B]
          Length = 293

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 20/118 (16%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILK----DISSQ 92
           I   +    G  V+E GAG G LT  LL       KVI +E+   F  I +         
Sbjct: 90  IIGYADVFPGAVVLEAGAGSGALTCWLLRAAGDRGKVISVERRPDFAMIARRNVTRFFGA 149

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            P    ++  D  +V        ++PIR +         R++ + +      P    L
Sbjct: 150 LPPTWRLVVGDLTEVT------AAAPIRRVD--------RIVLDLLEPWACVPAVARL 193


>gi|299822760|ref|ZP_07054646.1| UbiE/COQ5 family methyltransferase [Listeria grayi DSM 20601]
 gi|299816289|gb|EFI83527.1| UbiE/COQ5 family methyltransferase [Listeria grayi DSM 20601]
          Length = 190

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           I E     +  T+++IGAG G LT         KV+ ++ D+    I+++ + +     +
Sbjct: 29  IFELISPSEKPTILDIGAGTGFLTIPAAKAFGGKVVALDMDKDMLDIIEERAKKEDLEDI 88

Query: 98  EIIQDDA 104
           E++  +A
Sbjct: 89  ELLFGNA 95


>gi|312128525|ref|YP_003993399.1| methyltransferase type 11 [Caldicellulosiruptor hydrothermalis 108]
 gi|311778544|gb|ADQ08030.1| Methyltransferase type 11 [Caldicellulosiruptor hydrothermalis 108]
          Length = 198

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 36  LKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDIS 90
           + KI           G  ++++G G G LT+ LL       KV  ++  ++   I K   
Sbjct: 23  IDKIEFLLGILRIKKGSCILDVGCGTGVLTEHLLKRVGSEGKVFGVDFSEKMIEIAKSKF 82

Query: 91  SQHPNRLEIIQDDALKVDFEKFFN 114
              PN +E+I +D   + F+ +F+
Sbjct: 83  KDFPN-VELIVEDVNLLTFKNYFD 105


>gi|209519238|ref|ZP_03268040.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. H160]
 gi|209500318|gb|EEA00372.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. H160]
          Length = 217

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L    +  ++ +        +V+EIGAG G +   LL   A+ V+ ++ + +   +
Sbjct: 57  GQHMLA-PRVEARVLQELAVKKHESVLEIGAGSGYM-AALLAHRAQHVLTVDIEPELAEL 114

Query: 86  LK-DISSQHPNRLEIIQDDA 104
            K ++ +     +E+   DA
Sbjct: 115 AKSNLIANGVLNVEVATGDA 134


>gi|327537468|gb|EGF24192.1| Methyltransferase type 12 [Rhodopirellula baltica WH47]
          Length = 224

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDI 89
              + +K+A      +   VIE+G G G  TQ LL       K++ +EK   F   L  I
Sbjct: 42  SPYLTRKLANRDCVKNARCVIELGPGAGGTTQALLEYMRPDAKLLAVEKSTVFSEPLHAI 101

Query: 90  SSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
              H  RLE+  DDA  + +            +++ +P++     +   I+         
Sbjct: 102 ---HDPRLEVAMDDACALAEIAAKHEFGLVDAVVSGIPFSSMPPAVAKTIAQSIHQVLRP 158

Query: 149 SLTLL 153
               +
Sbjct: 159 GGVFV 163


>gi|150005674|ref|YP_001300418.1| hypothetical protein BVU_3164 [Bacteroides vulgatus ATCC 8482]
 gi|254884107|ref|ZP_05256817.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294776584|ref|ZP_06742054.1| methyltransferase small domain protein [Bacteroides vulgatus PC510]
 gi|319640872|ref|ZP_07995583.1| hypothetical protein HMPREF9011_01180 [Bacteroides sp. 3_1_40A]
 gi|262827953|sp|A6L532|TRMN6_BACV8 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|149934098|gb|ABR40796.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254836900|gb|EET17209.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294449572|gb|EFG18102.1| methyltransferase small domain protein [Bacteroides vulgatus PC510]
 gi|317387509|gb|EFV68377.1| hypothetical protein HMPREF9011_01180 [Bacteroides sp. 3_1_40A]
          Length = 234

 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +  +    +++IG G G ++ M+      ++  ++ D       +   +  P  +R+E+ 
Sbjct: 33  ADVVSARNILDIGTGTGLISLMMAQRCNARIRAVDIDADAVEQARGNVAASPWQDRIEVE 92

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
             D      E  F++     I++N PY
Sbjct: 93  LQDICHFTSETLFDV-----IVSNPPY 114


>gi|302521354|ref|ZP_07273696.1| O-methyltransferase [Streptomyces sp. SPB78]
 gi|318056718|ref|ZP_07975441.1| O-methyltransferase [Streptomyces sp. SA3_actG]
 gi|318075352|ref|ZP_07982684.1| O-methyltransferase [Streptomyces sp. SA3_actF]
 gi|302430249|gb|EFL02065.1| O-methyltransferase [Streptomyces sp. SPB78]
          Length = 378

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISS 91
            +++  +   +G   G  V+EIG G G  T ++   +G R V  +E D       +D   
Sbjct: 99  PSLVADMLGKAGIERGHKVLEIGTGTGYSTALMCHGIGPRAVTTVEVDPGVARRARDALG 158

Query: 92  QHPNRLEIIQDDAL 105
                   +  D L
Sbjct: 159 AAGYVPHTVTGDGL 172


>gi|302530306|ref|ZP_07282648.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302439201|gb|EFL11017.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 189

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G  V+EIG G G  T++L+    R +  +E D     +L++   ++ +R +I++ 
Sbjct: 34  GDDVLEIGPGFGATTRVLVDALPR-LTALEIDPASTRLLRE---KYGDRADIVEG 84


>gi|323455182|gb|EGB11051.1| hypothetical protein AURANDRAFT_11485 [Aureococcus anophagefferens]
          Length = 367

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 12/141 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLE 98
            +    +   V+EIG G G L  +   LGARKV+ IE  +    + +   + +     + 
Sbjct: 49  RAIVPGES-VVLEIGTGSGLLAMLAARLGARKVVAIEASRHMAALARKNIAANGLDGAIT 107

Query: 99  IIQD-----DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           +I+      DA ++          P    A+LP  + + L    +  ++   +       
Sbjct: 108 VIERLSTELDADEIRRACGLGAGRPYA--ADLPDVLVSELFGTLLLGESALEYLRDARER 165

Query: 154 FQKEVGERITAQKNSPHYGRL 174
             +              Y  L
Sbjct: 166 LVRPGCR--VVPPRGVQYAAL 184


>gi|257126532|ref|YP_003164646.1| methyltransferase small [Leptotrichia buccalis C-1013-b]
 gi|257050471|gb|ACV39655.1| methyltransferase small [Leptotrichia buccalis C-1013-b]
          Length = 242

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI- 85
           QNF LD  +L    +   +     +++IG G G +  +L      ++  IE  +    I 
Sbjct: 24  QNFTLDSVLLADFVKI--NRKTKKILDIGTGCGIIALLLAQRSKAQITGIELQETMAEIT 81

Query: 86  LKDIS-SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +++I+ ++  N+++II +D    +++  FN      I+ N PY
Sbjct: 82  IRNINGNKFENQVKIINEDI--KNYKNIFNRDEFDTIVTNPPY 122


>gi|49478887|ref|YP_039112.1| adenosine dimethyl transferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330443|gb|AAT61089.1| conserved hypothetical protein, possible adenosine dimethyl
           transferase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 192

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 10/132 (7%)

Query: 34  NILKK-IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDIS 90
           NIL K + ++        ++E+G G G+ T+ ++    ++   I+IE ++ FF  L+   
Sbjct: 25  NILAKAMVDAIDFEVAKCIVELGPGTGSFTKEIMKRKKKRTTFILIEINEVFFKKLQKQY 84

Query: 91  SQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNI----GTRLLFNWISADTWP 144
               + + +I   A  ++   E+         +      ++     +R+L N + +    
Sbjct: 85  EDDASVV-VIHGSAENIQRYVEELQIKGVDYVLSGLPFTSLPKEESSRILNNVMESLREN 143

Query: 145 PFWESLTLLFQK 156
             + +      K
Sbjct: 144 GRFITFQYSLVK 155


>gi|167838068|ref|ZP_02464927.1| hypothetical protein Bpse38_16267 [Burkholderia thailandensis
           MSMB43]
          Length = 379

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IGAG G L  +L + G  +V+  ++D++         ++  + +R+
Sbjct: 192 VARAPLPSTSLAFDIGAGTGVLAAVLASRGVERVVATDQDKRALACAARNVARLGYASRV 251

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+++ D         F       ++ N P+
Sbjct: 252 EVVEAD--------LFPDGRAPLVVCNPPW 273


>gi|45358437|ref|NP_987994.1| SAM-binding motif-containing protein [Methanococcus maripaludis S2]
 gi|44921195|emb|CAF30430.1| SAM (and some other nucleotide) binding motif [Methanococcus
           maripaludis S2]
          Length = 265

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 24/160 (15%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
                +++EIG GPG  T  L     +++ V+E+      ILK+   +   + + II   
Sbjct: 39  IDKNTSILEIGPGPGTYTMPLA-REVKEITVVEQSTGMIDILKNRMKEEEIDNINIINK- 96

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER-- 161
             + D  K    S+P  + ++  Y++G   + + +             L F      R  
Sbjct: 97  --RWDDFKLDADSNPDIVFSS--YSLGVDDMESALKKMNNYAEKYCCILTFGTRQAWRPI 152

Query: 162 --------ITAQKNSPHYG-----RLSVLTGW--RTKATM 186
                   +        YG       ++L          +
Sbjct: 153 YNKIGESILEHDPKRKEYGMTYILIYNILYQLGIYADVKI 192


>gi|240169328|ref|ZP_04747987.1| hypothetical protein MkanA1_08441 [Mycobacterium kansasii ATCC
           12478]
          Length = 274

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHP---NRL 97
           ++    G  V+++G G G L+  +   GA  V+ ++ D+       + ++ + P   +R+
Sbjct: 54  AAPDWTGKRVLDVGCGLGALSIEMAQAGA-SVLGVDLDENLIAFANRKVAQEFPQLLDRV 112

Query: 98  EIIQDDALKVDFEKFFNI 115
                DA+ +   + F++
Sbjct: 113 TFRAADAMSLPVAEPFDV 130


>gi|94967829|ref|YP_589877.1| UbiE/COQ5 methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549879|gb|ABF39803.1| UbiE/COQ5 methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 259

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILK 87
           + +  IL++I  ++        +++ +GPG LT  L    A+ +     D         +
Sbjct: 30  IRNEEILQRIVAAADPQVDDEALDVASGPGILTCALA---AKVLHATGIDLTPAMLAQSR 86

Query: 88  DISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            + +      L  ++ D   +     F+ +S   +     ++  +  L   +    
Sbjct: 87  KLQAGQGLMNLTWVEGDVAHLP----FSDASFTLVTCRYAFHHFSDPLTVLLEMKR 138


>gi|126436901|ref|YP_001072592.1| methyltransferase type 11 [Mycobacterium sp. JLS]
 gi|126236701|gb|ABO00102.1| Methyltransferase type 11 [Mycobacterium sp. JLS]
          Length = 248

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             +G     +V+++G+GPG LT  LL++GA +V  I+    F   ++        RL
Sbjct: 26 VAFAGVGADDSVLDVGSGPGALTAHLLSVGA-EVAAIDPSPPFIDAIRTRFPDIDVRL 82


>gi|72163402|ref|YP_291059.1| O-methyltransferase [Thermobifida fusca YX]
 gi|71917134|gb|AAZ57036.1| putative O-methyltransferase [Thermobifida fusca YX]
          Length = 358

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 41  ESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           ++     G  V+EIG G G    L   L+   A +V  IE D       +         +
Sbjct: 87  DALDVQPGQQVLEIGTGTGWNAALLCELVG-DADRVTTIEVDPVVAAQARKALGAAGYEV 145

Query: 98  EIIQDD 103
            ++  D
Sbjct: 146 RVVVGD 151


>gi|73542384|ref|YP_296904.1| methyltransferase small:ribosomal L11 methyltransferase [Ralstonia
           eutropha JMP134]
 gi|72119797|gb|AAZ62060.1| Methyltransferase small:Ribosomal L11 methyltransferase [Ralstonia
           eutropha JMP134]
          Length = 381

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK 111
           IGAG G L+ +L   G ++V+  + D++     ++  +Q  +  ++EII  D        
Sbjct: 209 IGAGTGVLSAVLARRGVQRVVATDMDERALACARENIAQLGYDKQVEIITAD-------- 260

Query: 112 FFNISSPIRIIANLPY 127
            F       I+ N P+
Sbjct: 261 LFPEGRAPLIVCNPPW 276


>gi|255523593|ref|ZP_05390560.1| Methyltransferase type 11 [Clostridium carboxidivorans P7]
 gi|255512648|gb|EET88921.1| Methyltransferase type 11 [Clostridium carboxidivorans P7]
          Length = 249

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           K + +         ++++G G G LT  L   GA  VI I+         K     +PN 
Sbjct: 20  KSMIDLVNVEKDQKILDLGCGTGILTNELAKEGA-TVIGIDSSTDMI---KKAKLNYPN- 74

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           L     DA  +DFE +F+      +   +P  
Sbjct: 75  LNFQVADATNLDFENYFDTVFSNAVFHWIPNQ 106


>gi|149007219|ref|ZP_01830883.1| hypothetical protein CGSSp18BS74_05201 [Streptococcus pneumoniae
           SP18-BS74]
 gi|147761257|gb|EDK68224.1| hypothetical protein CGSSp18BS74_05201 [Streptococcus pneumoniae
           SP18-BS74]
          Length = 196

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KKI +              G TV+++G G G L   L+ +   + 
Sbjct: 24  LGQKMTFLTDAGVFSKKIVDFGSQLLLKCLDVNQGETVLDVGCGYGPLGLSLVKVYGVQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +       +F        +I+N P   G ++
Sbjct: 84  TMVDINTRALDLARRNAEKNNAKATIFQSNIYARVQGRF------DHVISNPPIRAGKQV 137

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 138 VHEIIEKSKDFLETGGDLTIVIQK 161


>gi|108801063|ref|YP_641260.1| methyltransferase type 11 [Mycobacterium sp. MCS]
 gi|119870205|ref|YP_940157.1| methyltransferase type 11 [Mycobacterium sp. KMS]
 gi|108771482|gb|ABG10204.1| Methyltransferase type 11 [Mycobacterium sp. MCS]
 gi|119696294|gb|ABL93367.1| Methyltransferase type 11 [Mycobacterium sp. KMS]
          Length = 248

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             +G      V+++G+GPG LT  LL++GA +V  I+    F   ++        RL
Sbjct: 26 VAFAGVGADDRVLDVGSGPGALTAHLLSVGA-EVAAIDPSPPFIDAIRTRFPDIDVRL 82


>gi|294664781|ref|ZP_06730106.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605438|gb|EFF48764.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 207

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L++  ++    N+++++Q+D
Sbjct: 55  LPGARVLDLFAGSGALGLEAVSRGAAHATLIERDPGLVQRLREHVTRLDAANQVQVLQED 114

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           AL+   E+     + I  +           +   + A      W
Sbjct: 115 ALR-WLERAPAALADIVFVDPPFAAGLWPAVLERLPAHVAVDAW 157


>gi|226304682|ref|YP_002764640.1| methyltransferase [Rhodococcus erythropolis PR4]
 gi|226183797|dbj|BAH31901.1| putative methyltransferase [Rhodococcus erythropolis PR4]
          Length = 250

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           TV+++  GPG+L+  +L       V+ I+ D     + +  S++  +RL+++  D L  D
Sbjct: 44  TVVDLACGPGSLSARILEKFKHASVVGIDYDPMLLEVARQSSTRFGDRLQLVDADLLSTD 103

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +            +      I +    +W+        +   
Sbjct: 104 WP---------TSVTAPVQAIVSTTALHWLQPQQLVEVYRQC 136


>gi|295681262|ref|YP_003609836.1| protein-L-isoaspartate O-methyltransferase [Burkholderia sp.
           CCGE1002]
 gi|295441157|gb|ADG20325.1| protein-L-isoaspartate O-methyltransferase [Burkholderia sp.
           CCGE1002]
          Length = 689

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+  ++    G  V++IG G G     +    A +V  IE+D       ++   +
Sbjct: 64  PYIVAKMLAAAELQPGDRVLDIGTGSGYA-AAIAAEIAGRVDSIERDASLAEGARERLQR 122

Query: 93  H-PNRLEIIQDD 103
                +E+   D
Sbjct: 123 LGYENVEVHVGD 134


>gi|183603460|ref|ZP_02964394.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae CDC3059-06]
 gi|183577112|gb|EDT97640.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae CDC3059-06]
          Length = 193

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KKI +              G TV+++G G G L   L+ +   + 
Sbjct: 21  LGQKMTFLTDAGVFSKKIVDFGSQLLLKCLDVNQGETVLDVGCGYGPLGLSLVKVYGVQA 80

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +       +F        +I+N P   G ++
Sbjct: 81  TMVDINTRALDLARRNAEKNNAKATIFQSNIYARVQGRF------DHVISNPPIRAGKQV 134

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 135 VHEIIEKSKDFLETGGDLTIVIQK 158


>gi|32477424|ref|NP_870418.1| dimethyladenosine transferase (rRNA methylation) [Rhodopirellula
           baltica SH 1]
 gi|32447975|emb|CAD77495.1| conserved hypothetical protein-putative dimethyladenosine
           transferase (rRNA methylation) [Rhodopirellula baltica
           SH 1]
          Length = 224

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDI 89
              + +K+A      +   VIE+G G G  TQ LL       K++ +EK   F   L  I
Sbjct: 42  SPYLTRKLANRDCVKNARCVIELGPGAGGTTQALLEYMRPDAKLLAVEKSTVFSEPLHAI 101

Query: 90  SSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
              H  RLE+  DDA  + +            +++ +P++     +   I+         
Sbjct: 102 ---HDPRLEVAMDDACALAEIAAKHQFGLVDAVVSGIPFSSMPPAVAKTIAQSIHQVLRP 158

Query: 149 SLTLL 153
               +
Sbjct: 159 GGVFV 163


>gi|328883534|emb|CCA56773.1| hypothetical protein SVEN_3487 [Streptomyces venezuelae ATCC 10712]
          Length = 249

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 3/123 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
                  TV++ G G G  T  LL L    +VI ++   +    L+   +   +RLE+I 
Sbjct: 28  LNLRGDETVLDAGCGTGRDTAALLDLVPDGRVIGVDGSTRMLDQLRVKLADRLDRLEVIH 87

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D  K            +  +A   +      LF  ++ +  P          +  V   
Sbjct: 88  GDLTK--PLGLAGPVDAVSSVATFHWITDHPALFANVARNLRPGGQFVAECGGEGNVARI 145

Query: 162 ITA 164
             A
Sbjct: 146 NAA 148


>gi|319944282|ref|ZP_08018558.1| 3-demethylubiquinone-9 3-methyltransferase [Lautropia mirabilis
           ATCC 51599]
 gi|319742577|gb|EFV94988.1| 3-demethylubiquinone-9 3-methyltransferase [Lautropia mirabilis
           ATCC 51599]
          Length = 253

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 30  LLDLNILK--KIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-DQQF-FP 84
           L D+N L+   I + +G SL G  V+++G G G LT+ L   GA   + ++  D+     
Sbjct: 46  LHDINPLRLEWIVQQAGGSLSGRNVVDVGCGGGILTEALAKAGAATTLGVDLADKSLQVA 105

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNI 115
            L  + S  P + E I  + L       F++
Sbjct: 106 RLHALESGAPAKYEKIAVEDLAARQPGHFDV 136


>gi|239616734|ref|YP_002940056.1| ribosomal L11 methyltransferase [Kosmotoga olearia TBF 19.5.1]
 gi|239505565|gb|ACR79052.1| ribosomal L11 methyltransferase [Kosmotoga olearia TBF 19.5.1]
          Length = 273

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G +++++G G G L+ +   L A  V+ I+ D       ++ S  +   L I++ + 
Sbjct: 135 LKPGDSLLDVGCGTGILSVLAAKLRAGHVVGIDNDPNAIEKTRETSKINGVSLNILESNF 194

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           L+       +      I++N+   + ++ 
Sbjct: 195 LQ----ALASDEKFHIIVSNMIVELLSKF 219


>gi|114763426|ref|ZP_01442833.1| protein-L-isoaspartate O-methyltransferase [Pelagibaca bermudensis
           HTCC2601]
 gi|114543964|gb|EAU46975.1| protein-L-isoaspartate O-methyltransferase [Roseovarius sp.
           HTCC2601]
          Length = 216

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
              L K+ ++    +   V++IGAG G  + ++  + A  V+ +E+D+ F    + +  +
Sbjct: 64  PRTLAKMLDAVNIDNDDLVLDIGAGFGYSSAVIARI-AEAVVAVEEDEAFTSEAQSLLVE 122

Query: 93  HPNRLEIIQD 102
           H + +   + 
Sbjct: 123 HGDNVVFHEG 132


>gi|218671530|ref|ZP_03521200.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase protein
           [Rhizobium etli GR56]
          Length = 220

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL++ + L K+ + +       V+E+G G G  T  LL++ A  VI +E D+      K 
Sbjct: 65  FLMEASPLAKLLQLAAISKDDFVLEVGCGTGY-TSALLSIIAGSVIALECDEALAAEAKA 123

Query: 89  ISSQHPNRLEIIQD 102
             + +  ++E++  
Sbjct: 124 KLAGY-GKVEVVTG 136


>gi|13541668|ref|NP_111356.1| SAM-dependent methyltransferase [Thermoplasma volcanium GSS1]
 gi|14325068|dbj|BAB59993.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 185

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 24/63 (38%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
          +KI           ++++G GPG  T  L      KV  I+  Q+    LK       N 
Sbjct: 23 EKIVSQIPIQPNFDIVDLGCGPGFFTLPLSETTDGKVYAIDASQEMIDALKQRIDGRSNI 82

Query: 97 LEI 99
          + I
Sbjct: 83 VTI 85


>gi|302349237|ref|YP_003816875.1| Protein L-isoaspartate methyltransferase [Acidilobus saccharovorans
           345-15]
 gi|302329649|gb|ADL19844.1| Protein L-isoaspartate methyltransferase [Acidilobus saccharovorans
           345-15]
          Length = 259

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL----GARKVIVIEKDQQFFPILKDISSQHP 94
           IA ++G L G+ V+E GAG G LT  L       GA     +  D +        ++   
Sbjct: 91  IASAAGLLPGMRVLEAGAGSGFLTIWLAAHVCPGGAVYTYEVRSDMRELAASNVRAAGLE 150

Query: 95  NRLEIIQDDALKVDFEK-----FFNISSPIRIIA 123
             + I + D  K   E+     F ++  P   + 
Sbjct: 151 GCVTIKEGDIRKGAEERELDAAFLDMPDPWEALG 184


>gi|237747442|ref|ZP_04577922.1| L-isoaspartate(D-aspartate) O-methyltransferase [Oxalobacter
           formigenes HOxBLS]
 gi|229378793|gb|EEO28884.1| L-isoaspartate(D-aspartate) O-methyltransferase [Oxalobacter
           formigenes HOxBLS]
          Length = 217

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 12/84 (14%)

Query: 25  MGQNFLL---DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            GQN L    +  +L+ IA         TV+EIGAG G +   L+   AR V  +E    
Sbjct: 54  YGQNMLTPLTEALVLQGIA----LTGTDTVLEIGAGSGYM-AALMAHNARHVTTVE---- 104

Query: 82  FFPILKDISSQHPNRLEIIQDDAL 105
             P LK+++  +  R  I     L
Sbjct: 105 LEPALKELAESNLARYGIRNARVL 128


>gi|228472768|ref|ZP_04057526.1| methyltransferase type 11 [Capnocytophaga gingivalis ATCC 33624]
 gi|228275819|gb|EEK14585.1| methyltransferase type 11 [Capnocytophaga gingivalis ATCC 33624]
          Length = 231

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +  L G TV+++GA  GNLT  L + G  +V  I+  ++      +        + + Q 
Sbjct: 27  ADELRGHTVLDVGAATGNLTAYLSSQG-YEVTAIDLSERLIAKAAEKG------VSVQQR 79

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           D L +D    F+    I  I N   ++ +++         +    +   L+ Q    E+ 
Sbjct: 80  DMLTIDELSTFD---NIVCIGNTLPHLDSKVSVQLFLQKAYGQLTQGGKLVLQLVNFEKY 136

Query: 163 TAQKNSPHYGRLSVLTG 179
            AQ+   + G L ++T 
Sbjct: 137 FAQQQGDYLGNLPLITN 153


>gi|294911795|ref|XP_002778067.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
           [Perkinsus marinus ATCC 50983]
 gi|239886188|gb|EER09862.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
           [Perkinsus marinus ATCC 50983]
          Length = 226

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                   +E+G+G G LT+       +KV   E  + F   L+D       ++EII   
Sbjct: 59  NLNSETVSVEVGSGTGLLTREFSKRPGKKVYATELSEGFIQHLRDDDRIDKGKVEIIHST 118

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
              +      + S  + ++ ++ +++      
Sbjct: 119 EDDLCLPTESDGSVDLAVLCDVYHHLTHPRTI 150


>gi|159037795|ref|YP_001537048.1| hypothetical protein Sare_2196 [Salinispora arenicola CNS-205]
 gi|157916630|gb|ABV98057.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
          Length = 297

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEI 99
           ++   +   V ++GAG   LT + L  GA  V  +E D Q   +      ++   +R+ +
Sbjct: 27  ATVIHETSVVADVGAGSLALTALALRHGATHVYAVEADPQMAAVADQIIRTNGWTDRVTL 86

Query: 100 IQDDA 104
           I  DA
Sbjct: 87  IAGDA 91


>gi|307352187|ref|YP_003893238.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307155420|gb|ADN34800.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 280

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
                 V+EIG GPG +T  L  L  + +  I+   +    L+   ++     +E+I  +
Sbjct: 68  LEPSYEVLEIGPGPGTVTVPLSKL-VKSITSIDLSLRNIEFLRKNLTEKGCTNVEVINKN 126

Query: 104 ALKVDFEKFFNISSPIRIIA 123
            L++D  +  N    +    
Sbjct: 127 WLRMDDYELENSYDLVFCSH 146


>gi|312104020|ref|XP_003150298.1| hypothetical protein LOAG_14757 [Loa loa]
 gi|307754537|gb|EFO13771.1| hypothetical protein LOAG_14757 [Loa loa]
          Length = 122

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 221 SLKKITQEAFGKRRKTLRQSLKRLGGE--------NLLHQAGIETNLRAENLSIEDFCRI 272
            ++K+ +  F  R+K + + ++ L  E        +LL +  I+    A  L +E F  I
Sbjct: 1   VVEKVCRRVFNYRQKYVVKGIRSLYPEELAKNLADDLLRRCRIDPTTTAICLGVEQFADI 60

Query: 273 TNILTDNQ 280
             +  ++ 
Sbjct: 61  CYVYEEHC 68


>gi|229169571|ref|ZP_04297275.1| RRNA adenine dimethylase [Bacillus cereus AH621]
 gi|228613961|gb|EEK71082.1| RRNA adenine dimethylase [Bacillus cereus AH621]
          Length = 197

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ FF  LK     
Sbjct: 32  LAKKMVDVIDFNRAKCIVELGPGTGAFTKEIIKRKKKETIFLLIEINEVFFKELKRKFKD 91

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + +I   A  +K   E+         +      ++   +    +++          
Sbjct: 92  EQN-VIVIHGSAENIKKYMEQLNIECIDYVLSGLPFTSLPEEVSKRILNSVMETIHENGE 150

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 151 FITFQYSLVKKGFIQ 165


>gi|110633269|ref|YP_673477.1| methyltransferase type 12 [Mesorhizobium sp. BNC1]
 gi|110284253|gb|ABG62312.1| Methyltransferase type 12 [Chelativorans sp. BNC1]
          Length = 206

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
           +   I           V+E+GAG G  T+ LL  G  +  + V+E    F  IL++    
Sbjct: 38  LADLITRELTPSSA-PVLELGAGTGVFTRALLKRGLSEEDLTVVELGADFVSILRERFPG 96

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
                 ++  DA ++     ++ S    +++ LP
Sbjct: 97  A----RVLPVDASRLPQANLYDGSPVGAVVSGLP 126


>gi|260890353|ref|ZP_05901616.1| putative N-6 adenine-specific DNA methylase [Leptotrichia hofstadii
           F0254]
 gi|260859973|gb|EEX74473.1| putative N-6 adenine-specific DNA methylase [Leptotrichia hofstadii
           F0254]
          Length = 228

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QNF LD  +L    +   +     +++IG G G +  +L      ++  IE  +    I 
Sbjct: 10  QNFTLDSVLLADFVKI--NRKTKKILDIGTGCGIIALLLAQRSKAQITGIELQETMAEIA 67

Query: 87  KD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                 ++  N+++II +D    +++  FN      I+ N PY
Sbjct: 68  IRNINGNKFQNQVKIINEDI--KNYKNIFNRDEFDTIVTNPPY 108


>gi|47229807|emb|CAG07003.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 219

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH--PNRLEI 99
            G+    T +E+G G G ++  LL    + +V+ +++ +    +  + + +    +RL++
Sbjct: 47  VGADTQQTCLEVGCGSGAISLSLLRSRPQLQVLAVDQSRDAVELTAENAGRLGLEDRLQV 106

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
              D +K          S   +++N PY
Sbjct: 107 HHLDVMKAGETLLSLCGSVSALVSNPPY 134


>gi|157369542|ref|YP_001477531.1| type 12 methyltransferase [Serratia proteamaculans 568]
 gi|157321306|gb|ABV40403.1| Methyltransferase type 12 [Serratia proteamaculans 568]
          Length = 251

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                 V+++  GPG+L+  +L    + +V  ++ D     I +   +Q+ +R+ IIQ D
Sbjct: 39  VGQDFQVLDLACGPGSLSLRILQRFPQARVTAVDLDPLLLAIARGALAQYGDRIRIIQAD 98

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
               D     ++  P       P  + +    +W+  +     + ++  L 
Sbjct: 99  L--ADPACLSSLDDP------APQAVVSSTALHWLMPEHLGVLYRNIAELL 141


>gi|302036312|ref|YP_003796634.1| hypothetical protein NIDE0946 [Candidatus Nitrospira defluvii]
 gi|300604376|emb|CBK40708.1| conserved protein of unknown function, putative SAM-dependent
           methyltransferase [Candidatus Nitrospira defluvii]
          Length = 373

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 12/150 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRL 97
              +     +   +IG G G L  +L   G   ++  ++D +     ++  ++    +R+
Sbjct: 187 VADAPLPSSVLAFDIGTGTGVLAAVLARRGVSHIVATDQDPRALACARENLARLELIDRV 246

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
           E++Q D         F       ++ N P+        + I    + P    LT      
Sbjct: 247 EVVQAD--------LFPEGKAPLVLCNPPWVPARP--TSPIEQAIYDPECRMLTGFLNGL 296

Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMM 187
                   +       L+     RT+A ++
Sbjct: 297 AAHLEPGGEGWLLLSDLAEHLELRTRAELL 326


>gi|291562307|emb|CBL41123.1| Dimethyladenosine transferase (rRNA methylation)
           [butyrate-producing bacterium SS3/4]
          Length = 265

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +     +   V+E+G+G G  T  +L  G  ++  +E  ++F  +LKD  +++  +  +I
Sbjct: 35  DYIPINENSNVVEVGSGGGQATAPILATGC-QLTAVECGKRFSELLKDKFNEYQ-KFSVI 92

Query: 101 QDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
                   FE   F++         +P  IG   +F+ +        +
Sbjct: 93  TGKFEDTVFEDNTFDLVFSATAFHWVPEKIGYEKVFSMLKNGGAFARF 140


>gi|229014035|ref|ZP_04171159.1| RRNA adenine dimethylase [Bacillus mycoides DSM 2048]
 gi|228747291|gb|EEL97170.1| RRNA adenine dimethylase [Bacillus mycoides DSM 2048]
          Length = 197

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQ 92
           + KK+ +         ++E+G G G  T+ ++    ++ I   IE ++ FF  LK     
Sbjct: 32  LAKKMVDVIDFNRAKCIVELGPGTGAFTKEIIKRKKKETIFLLIEINEVFFKELKRKFKD 91

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + +I   A  +K   E+         +      ++   +    +++          
Sbjct: 92  EQN-VIVIHGSAENIKKYMEQLNIECIDYVLSGLPFTSLPEEVSKRILNSVMETIHENGE 150

Query: 151 TLLFQKEVGERITAQ 165
            + FQ  + ++   Q
Sbjct: 151 FITFQYSLVKKGFIQ 165


>gi|319944320|ref|ZP_08018594.1| glycosyl transferase [Lautropia mirabilis ATCC 51599]
 gi|319742281|gb|EFV94694.1| glycosyl transferase [Lautropia mirabilis ATCC 51599]
          Length = 700

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                      V+E+G G G +T+ L   GA +V  +E       +     +  PN + +
Sbjct: 70  VRPLDIGPQDRVLELGCGTGAITRYLGETGA-QVTAVEGSLARARVAAARCADLPN-VTV 127

Query: 100 IQDDALKVDFEKFFNI 115
           I DD   VD E  ++ 
Sbjct: 128 IADDLQAVDVEGQYDW 143


>gi|254498128|ref|ZP_05110883.1| protein-L-isoaspartate-O-methyltransferase [Legionella drancourtii
           LLAP12]
 gi|254352643|gb|EET11423.1| protein-L-isoaspartate-O-methyltransferase [Legionella drancourtii
           LLAP12]
          Length = 217

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 26/115 (22%)

Query: 12  TILSHYKIIPKKYM-------------------GQNFLL--DLNILKKIAESSGSLDGIT 50
           +IL+ Y +IP+                      GQ  L   +      I ++       T
Sbjct: 24  SILNLYDLIPRHEFVPEQYSHFAYSDMQIPLGHGQRMLTPLEEGT---ILQALKLKGDET 80

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-FPILKDISSQHPNRLEIIQDDA 104
           V+E+G G G  T  LL+   +KVI ++   +F     + + + H   +E+I  DA
Sbjct: 81  VLEVGTGCGFFT-ALLSKLCKKVISVDYYAEFTVNAARKLKAHHCTNVELITGDA 134


>gi|183600219|ref|ZP_02961712.1| hypothetical protein PROSTU_03761 [Providencia stuartii ATCC 25827]
 gi|188022514|gb|EDU60554.1| hypothetical protein PROSTU_03761 [Providencia stuartii ATCC 25827]
          Length = 208

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+           V+EIG G G  T +L  L A+ V  +E+       L+  + +
Sbjct: 61  PYIVAKMTALLAIKPEDHVLEIGTGSGYQTAVLAHL-AKHVFSVER----VKSLQWTAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I  RLL   
Sbjct: 116 RFKQLDLHNISTRHGDGWEGWQSKGPFDAIIVTAAPSEIPPRLLQQL 162


>gi|91787548|ref|YP_548500.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Polaromonas sp. JS666]
 gi|91696773|gb|ABE43602.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Polaromonas sp. JS666]
          Length = 233

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ  L    +  +I +         V+EIGAG G +   LL   A++VI +E D   
Sbjct: 62  KNPGQCMLA-PKVEARILQDVAVQKHEKVLEIGAGSGYM-AALLAHRAQQVITLEIDPTL 119

Query: 83  FPILKDISSQ 92
             + +    +
Sbjct: 120 AQMARSNLQK 129


>gi|323140329|ref|ZP_08075261.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT
           12067]
 gi|322415187|gb|EFY05974.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT
           12067]
          Length = 242

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 51/108 (47%), Gaps = 18/108 (16%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +G NF    ++++K            V+E+G G G ++ +L + GA +V  ++ + Q   
Sbjct: 36  LG-NF---PHVVRK----------AKVLELGCGTGAISMLLESRGAAEVTALDCNPQVTR 81

Query: 85  ILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +++   + +   ++  +I  D L+ ++++     S   + +N PY   
Sbjct: 82  LVRQSVADNSLQDKFTVIDGD-LR-NYKQLLQPESMDLVASNPPYRNS 127


>gi|260775422|ref|ZP_05884319.1| predicted O-methyltransferase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608603|gb|EEX34768.1| predicted O-methyltransferase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 239

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHP--NRLEII 100
                 T+++IG G G L  M        VI  I+ DQ      K+  +  P  +RL ++
Sbjct: 39  DIKQANTLLDIGTGTGLLALMCAQRNPDCVIDAIDIDQHALQASKENFTSSPWSSRLSLL 98

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           + D L   FE  ++      I+ N PY   
Sbjct: 99  EGDVLSFPFETSYD-----AIVCNPPYFNS 123


>gi|187778056|ref|ZP_02994529.1| hypothetical protein CLOSPO_01648 [Clostridium sporogenes ATCC
           15579]
 gi|187774984|gb|EDU38786.1| hypothetical protein CLOSPO_01648 [Clostridium sporogenes ATCC
           15579]
          Length = 193

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS 90
           D+ IL          +   ++++GAG G+++     + A+ +VI IEKD++   I+K   
Sbjct: 20  DIRILS--IAKMNLEENSKILDVGAGTGSISIQAAKICAKGQVIAIEKDEEALDIIKKNK 77

Query: 91  SQHP-NRLEIIQDDALKVD 108
            +     L+II+ +AL+V+
Sbjct: 78  EKFNCENLKIIEGEALEVE 96


>gi|152981335|ref|YP_001354622.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Janthinobacterium sp. Marseille]
 gi|151281412|gb|ABR89822.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 216

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-N 95
            +I +         V+EIGAG G +   LL   AR V  +E + +   + +   + +  +
Sbjct: 67  ARIMQELAVKKHENVLEIGAGSGYM-AALLAHKARHVTTVEIEPELKALAEKNLADYGVS 125

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
              +   D ++   +  +++   I +  ++P
Sbjct: 126 NATVELGDGVQGWGDANYDV---IVVSGSVP 153


>gi|187926843|ref|YP_001893188.1| methyltransferase small [Ralstonia pickettii 12J]
 gi|241665172|ref|YP_002983531.1| methyltransferase small [Ralstonia pickettii 12D]
 gi|187728597|gb|ACD29761.1| methyltransferase small [Ralstonia pickettii 12J]
 gi|240867199|gb|ACS64859.1| methyltransferase small [Ralstonia pickettii 12D]
          Length = 380

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             ++         +IG G G L  +L   G + ++  ++D +     +D  +     +++
Sbjct: 194 VANAPLPSTALAFDIGTGTGVLAAVLAKRGVKHIVATDQDPRALACARDNLAHLGLQSQV 253

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+I+ D         F       I+ N P+
Sbjct: 254 EVIEAD--------LFPEGRAPLIVCNPPW 275


>gi|111221903|ref|YP_712697.1| putative methyltransferase [Frankia alni ACN14a]
 gi|111149435|emb|CAJ61127.1| Putative methyltransferase [Frankia alni ACN14a]
          Length = 281

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             +A   G   G  V+EIG G G  T  +   GA  ++ +E   +   + +   + H + 
Sbjct: 33  DDLAGMVGLGPGCRVLEIGCGTGKATVPIARRGA-WIVAVELGPEMAAVARRHLAGHED- 90

Query: 97  LEIIQDDALKVDFEKFFNISSPIRII 122
              +    L+  FE +     P  ++
Sbjct: 91  ---VH--VLEAVFEDWPLPPEPFDVV 111


>gi|332346692|gb|AEE60023.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 187

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQVFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L+D      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRDNF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|297661478|ref|XP_002809268.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like
           [Pongo abelii]
          Length = 137

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
                ++E   GPG LTQ LL  GA KV+ +E D+ F P L+
Sbjct: 94  RPPHLLLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLE 134


>gi|294868630|ref|XP_002765616.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
           [Perkinsus marinus ATCC 50983]
 gi|239865695|gb|EEQ98333.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
           [Perkinsus marinus ATCC 50983]
          Length = 225

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N L  +       D +  +++GAG G  T+ L      KV   E    F   LK+ S  
Sbjct: 46  KNHLDSVLHILDLKDNMVSVDVGAGTGLFTRELAKCAGAKVYATEISPGFLEYLKEDSRL 105

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
             NR+ +I+     +   +    +  + ++ ++ +++   
Sbjct: 106 DKNRVHLIKCTEESLCLPEEAKGTVDLVLVCDVYHHLTHP 145


>gi|256810806|ref|YP_003128175.1| methyltransferase small [Methanocaldococcus fervens AG86]
 gi|256794006|gb|ACV24675.1| methyltransferase small [Methanocaldococcus fervens AG86]
          Length = 210

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 12/179 (6%)

Query: 31  LDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +D  +   I   +     G  VI++G G G L      LGA++ I I+ D++     K+ 
Sbjct: 29  IDGKLASDILFFAVNDFYGNVVIDLGCGTGRLAIGSKILGAKRAIGIDIDKESIETAKEN 88

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISS-----PIRIIANLPYNIGTRLLFNWI--SADT 142
           + +    ++    D   VD E   +I          +I N P+    +         A  
Sbjct: 89  AKKANVDVDFYCMDIRDVDNEFLNDILGEGKNLKKVVIQNPPFGAQKKHADRIFLDKALE 148

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                 ++     K+   +    K     GR++ +     +   +++         P V
Sbjct: 149 IGDIIYTIHNYPTKDFVMKYVEDKG----GRITHIYEAFFRIPAIYEFHKKRAVNIPVV 203


>gi|284029539|ref|YP_003379470.1| type 11 methyltransferase [Kribbella flavida DSM 17836]
 gi|283808832|gb|ADB30671.1| Methyltransferase type 11 [Kribbella flavida DSM 17836]
          Length = 251

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-L 97
           I +      G TV++IGAG G LT  L    A +VI ++       +L+        R +
Sbjct: 25  ILDRVPLRRGQTVVDIGAGTGFLTVELAQRSAARVIAVDPWADAMDVLRRKVEYLGLRDV 84

Query: 98  EIIQDDALKVDFEK 111
           E++  DA +++   
Sbjct: 85  ELVVSDAARLELPD 98


>gi|89055749|ref|YP_511200.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Jannaschia
           sp. CCS1]
 gi|88865298|gb|ABD56175.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Jannaschia
           sp. CCS1]
          Length = 217

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           LD     K+ ++        V+E+GA  G  T  LL   A  V+ IE+D+   
Sbjct: 62  LDPRATAKLLQALEPRPSDLVLELGASTGY-TTALLAHMAEAVVAIEEDEDLA 113


>gi|28211651|ref|NP_782595.1| ribosomal protein L11 methyltransferase [Clostridium tetani E88]
 gi|38605254|sp|Q892R2|PRMA_CLOTE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|28204093|gb|AAO36532.1| ribosomal protein L11 methyltransferase [Clostridium tetani E88]
          Length = 314

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDD 103
             +   V +IG G G L      L A+KVI ++ D+      K      H + +EI+  D
Sbjct: 177 VKEEDVVFDIGTGSGILGIAAAKLNAKKVIGVDLDEVAVDSAKKNVGFNHLDNIEILHGD 236

Query: 104 ALKV 107
            ++V
Sbjct: 237 LMEV 240


>gi|262200768|ref|YP_003271976.1| type 11 methyltransferase [Gordonia bronchialis DSM 43247]
 gi|262084115|gb|ACY20083.1| Methyltransferase type 11 [Gordonia bronchialis DSM 43247]
          Length = 194

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNR 96
           I   +G ++G TV+EIG G G +   +L       + I  + D       +   ++   R
Sbjct: 26  IPRVAGRVEGPTVLEIGCGSGAMAAEVLRARPDIERYIATDIDPAMVRAARRRLARFGGR 85

Query: 97  --LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             ++++    L  D E F  + S + +   + +          + 
Sbjct: 86  AHVQLVDAAGLGFDDESFDTVCSWLMLHHTIEWQRVIDDCVRVLR 130


>gi|326445254|ref|ZP_08219988.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 404

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGP----GNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
             ++  +        G  V+EIG G     G LT  L   G  +V+ +E DQ      + 
Sbjct: 89  PGVVASMLAHLDVRPGHRVLEIGTGTGWNAGLLTHRL---GDGQVVTVEVDQAVADAARA 145

Query: 89  ISSQHPNRLEIIQDDAL 105
               H     +I  D L
Sbjct: 146 RLHGHGLHPAVITADGL 162


>gi|254392768|ref|ZP_05007940.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
 gi|197706427|gb|EDY52239.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 383

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGP----GNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
             ++  +        G  V+EIG G     G LT  L   G  +V+ +E DQ      + 
Sbjct: 68  PGVVASMLAHLDVRPGHRVLEIGTGTGWNAGLLTHRL---GDGQVVTVEVDQAVADAARA 124

Query: 89  ISSQHPNRLEIIQDDAL 105
               H     +I  D L
Sbjct: 125 RLHGHGLHPAVITADGL 141


>gi|171184731|ref|YP_001793650.1| methyltransferase type 11 [Thermoproteus neutrophilus V24Sta]
 gi|170933943|gb|ACB39204.1| Methyltransferase type 11 [Thermoproteus neutrophilus V24Sta]
          Length = 165

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 36 LKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          +++IA    + D G +V+E+GAG G+ T +LL  G R V  ++ D      L+     + 
Sbjct: 2  IEEIARDLEAFDLGESVLEVGAGYGSTTALLLRRGLR-VCAVDIDPGAISYLRSAFKDYA 60

Query: 95 N 95
           
Sbjct: 61 E 61


>gi|134094907|ref|YP_001099982.1| hypothetical protein HEAR1700 [Herminiimonas arsenicoxydans]
 gi|133738810|emb|CAL61857.1| Conserved hypothetical protein, putative SAM-dependent
           methyltransferase [Herminiimonas arsenicoxydans]
          Length = 306

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 13/104 (12%)

Query: 24  YMGQ--------NFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           Y+GQ        N L+D   +     +       G  V+E+G G G L+       A KV
Sbjct: 11  YLGQFIPVHYHHNMLMDNRRMTGFKAAIDYLVAPGAKVLELGGGTGVLSWF-AAAKAEKV 69

Query: 74  IVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNI 115
             +E +       +   S++ N  ++E+++ DA      +  ++
Sbjct: 70  WCVEYNPDLVREARTFLSRNVNGHKVEVVEADAFDYLPPEPVDV 113


>gi|315441657|ref|YP_004074534.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
 gi|315265312|gb|ADU02053.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
          Length = 208

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 7/132 (5%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
               G T +EIG GPG  +Q++L   GA ++  ++ D       +   +   NR+ +++ 
Sbjct: 32  RIPPGSTALEIGCGPGYGSQLVLQRFGADRIDALDLDPTMIDRARKRLAPCGNRVTLVRG 91

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
            A  +      +  S   +     + I   +     +              + +EV +  
Sbjct: 92  SATDLRAALDADDDSYDAVFD---FGIIHHIPQWRTAVAEAARVLAPGGRFYFEEVTKHA 148

Query: 163 TAQKNSPHYGRL 174
             +     Y RL
Sbjct: 149 LDRP---TYRRL 157


>gi|296159505|ref|ZP_06842329.1| methyltransferase small [Burkholderia sp. Ch1-1]
 gi|295890213|gb|EFG70007.1| methyltransferase small [Burkholderia sp. Ch1-1]
          Length = 374

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L   G +K+I  ++D +     ++  ++  +  ++
Sbjct: 188 VARAPLPSLNKAFDIGTGTGVLAALLAKRGVKKIIATDQDPRALACARENLTRLGYDQQV 247

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E++Q D         F       ++ N P+
Sbjct: 248 EVVQAD--------LFPEGRAPLVVCNPPW 269


>gi|113868957|ref|YP_727446.1| methylase of polypeptide chain release factors [Ralstonia eutropha
           H16]
 gi|113527733|emb|CAJ94078.1| methylase of polypeptide chain release factors [Ralstonia eutropha
           H16]
          Length = 387

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 42  SSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLE 98
           ++  L   T+  +IG G G L  +L   G ++V+  ++D +     ++  +Q  +   +E
Sbjct: 202 ATEPLPAKTLAFDIGTGTGVLAAVLARRGVQRVVATDQDPRALACARENIAQLGYAGEVE 261

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           I+Q D         F       ++ N P+
Sbjct: 262 IVQAD--------LFPEGRAPLVVCNPPW 282


>gi|68052371|sp|Q921L7|HEMK1_MOUSE RecName: Full=HemK methyltransferase family member 1
 gi|15030311|gb|AAH11431.1| HemK methyltransferase family member 1 [Mus musculus]
 gi|19354454|gb|AAH24428.1| HemK methyltransferase family member 1 [Mus musculus]
 gi|148689235|gb|EDL21182.1| HemK methyltransferase family member 1, isoform CRA_a [Mus
           musculus]
          Length = 340

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLE 98
           +  + DG  ++E+G G G +T  LL+   + +V+ ++K++    +  + +   Q  +R+ 
Sbjct: 155 AVRAQDGPLILEVGCGSGAITLSLLSQLPKSRVVAVDKEEAAVSLTHENARRLQLQDRIR 214

Query: 99  IIQDDAL-KVDFEKFFNISSPIRIIANLPY 127
           II  D   +         S    +++N PY
Sbjct: 215 IICLDITSEGCCTHLLPWSPLDLVVSNPPY 244


>gi|170761012|ref|YP_001785810.1| methlytransferase,-like protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408001|gb|ACA56412.1| putative methlytransferase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 196

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++ I   +   +G  V++IG+G G L   L  +      +  I+  +    + K+ +  H
Sbjct: 25  IEYILSKANLKEGDRVLDIGSGTGVLIPYLENIISNNGNIAAIDIAENMLKVSKEKNKYH 84

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
              L+ I  D L+   +K FN
Sbjct: 85  --NLKFIVGDFLEYKSKKTFN 103


>gi|308232585|ref|ZP_07416532.2| hypothetical protein TMAG_00580 [Mycobacterium tuberculosis
           SUMu001]
 gi|308369249|ref|ZP_07417062.2| hypothetical protein TMBG_02372 [Mycobacterium tuberculosis
           SUMu002]
 gi|308371472|ref|ZP_07425074.2| hypothetical protein TMCG_01339 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372757|ref|ZP_07429739.2| hypothetical protein TMEG_00330 [Mycobacterium tuberculosis
           SUMu005]
 gi|308376251|ref|ZP_07438145.2| hypothetical protein TMHG_02902 [Mycobacterium tuberculosis
           SUMu008]
 gi|308378489|ref|ZP_07482740.2| hypothetical protein TMIG_00186 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379636|ref|ZP_07486973.2| hypothetical protein TMJG_01087 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380832|ref|ZP_07491189.2| hypothetical protein TMKG_01080 [Mycobacterium tuberculosis
           SUMu011]
 gi|308406260|ref|ZP_07495745.2| hypothetical protein TMLG_00325 [Mycobacterium tuberculosis
           SUMu012]
 gi|308213528|gb|EFO72927.1| hypothetical protein TMAG_00580 [Mycobacterium tuberculosis
           SUMu001]
 gi|308328284|gb|EFP17135.1| hypothetical protein TMBG_02372 [Mycobacterium tuberculosis
           SUMu002]
 gi|308328686|gb|EFP17537.1| hypothetical protein TMCG_01339 [Mycobacterium tuberculosis
           SUMu003]
 gi|308340026|gb|EFP28877.1| hypothetical protein TMEG_00330 [Mycobacterium tuberculosis
           SUMu005]
 gi|308351746|gb|EFP40597.1| hypothetical protein TMHG_02902 [Mycobacterium tuberculosis
           SUMu008]
 gi|308352435|gb|EFP41286.1| hypothetical protein TMIG_00186 [Mycobacterium tuberculosis
           SUMu009]
 gi|308356385|gb|EFP45236.1| hypothetical protein TMJG_01087 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360342|gb|EFP49193.1| hypothetical protein TMKG_01080 [Mycobacterium tuberculosis
           SUMu011]
 gi|308363975|gb|EFP52826.1| hypothetical protein TMLG_00325 [Mycobacterium tuberculosis
           SUMu012]
          Length = 195

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G   +EIG G G   Q LL L A  +  +E D      L      +  R  II+ D    
Sbjct: 39  GPRTLEIGPGYGATLQALLGLTA-SLTAVEVDNSMVERLNRR---YGQRARIIRGDG--- 91

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
                 +      +   + +++ +  L + + A+ + 
Sbjct: 92  TQTGLPDDHFTSVVCFTMLHHVASAQLQDQLFAEAYR 128


>gi|289547839|ref|YP_003472827.1| ribosomal L11 methyltransferase [Thermocrinis albus DSM 14484]
 gi|289181456|gb|ADC88700.1| ribosomal L11 methyltransferase [Thermocrinis albus DSM 14484]
          Length = 239

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           L G T +++G G G L+  L  LGAR+V+ I+ D++     K+ + ++   L++ Q 
Sbjct: 108 LPGWTALDVGCGSGILSIALAKLGAREVLAIDIDERAVEETKENAKRNGVSLQVKQA 164


>gi|121604036|ref|YP_981365.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Polaromonas naphthalenivorans CJ2]
 gi|120593005|gb|ABM36444.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Polaromonas naphthalenivorans CJ2]
          Length = 229

 Score = 45.6 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + P K  GQ  L    +  +I +         V+EIG G G +   LL   A++VI +E 
Sbjct: 54  LPPHKNPGQCMLA-PRVEARILQDLAVQKHEKVLEIGTGSGFM-AALLAHRAQQVITLEI 111

Query: 79  DQQFFPILKDISSQHPN-RLEIIQDD 103
           + +     +    +      E+ Q D
Sbjct: 112 EPELAETARRNLQKAGIYNAEVRQAD 137


>gi|295677830|ref|YP_003606354.1| methyltransferase small [Burkholderia sp. CCGE1002]
 gi|295437673|gb|ADG16843.1| methyltransferase small [Burkholderia sp. CCGE1002]
          Length = 374

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK 111
           IG G G L  +L   G RK++  ++D +     ++  ++  +  ++E++Q D        
Sbjct: 202 IGTGTGVLAALLAKRGVRKIVATDQDARALACARENLARLGYAGQVEVVQAD-------- 253

Query: 112 FFNISSPIRIIANLPY 127
            F       ++ N P+
Sbjct: 254 LFPDGRAPLVVCNPPW 269


>gi|226307504|ref|YP_002767464.1| hypothetical protein RER_40170 [Rhodococcus erythropolis PR4]
 gi|226186621|dbj|BAH34725.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 372

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             S+      +  +IG G G L  +L   G + V   ++D +     +   S+  + +++
Sbjct: 186 VTSAPLPSTESAFDIGTGTGVLAAVLARRGVKTVTATDQDPRALQCARTNLSRLGYGDQV 245

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            +++ D         F   +   ++ N P+
Sbjct: 246 NVVEAD--------LFPEGTAPLVVCNPPW 267


>gi|209516773|ref|ZP_03265624.1| protein-L-isoaspartate O-methyltransferase [Burkholderia sp. H160]
 gi|209502736|gb|EEA02741.1| protein-L-isoaspartate O-methyltransferase [Burkholderia sp. H160]
          Length = 663

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            + Q F     I+ K+  ++    G  V++IG G G     +    A +V  IE+D    
Sbjct: 60  SISQPF-----IVAKMLAAAELQPGDRVLDIGTGSGYA-AAIAAEIAGRVDSIERDASLA 113

Query: 84  PILKDISSQH-PNRLEIIQDD 103
              ++   +     +E+   D
Sbjct: 114 EGARERLQRLGYENVEVHVGD 134


>gi|300790071|ref|YP_003770362.1| hypothetical protein AMED_8262 [Amycolatopsis mediterranei U32]
 gi|299799585|gb|ADJ49960.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 189

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G  V+EIG G G  T +LL     K+ V+E D     +L+   +++ +R  +++ 
Sbjct: 34  GDDVLEIGPGFGATTAVLLK-AVPKLTVLEIDHASSELLR---AKYGDRAAVVEG 84


>gi|218679949|ref|ZP_03527846.1| protein-L-isoaspartate O-methyltransferase [Rhizobium etli CIAT
           894]
          Length = 327

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G  V+E+G G G  T  L++  AR+V  IE+ ++     K+   +
Sbjct: 63  PFIVALMLEKARLDAGDKVLEVGTGSGY-TSALMSRIARRVYSIERHERLALQAKERFEK 121

Query: 93  H-PNRLEIIQDDALKVDFEK 111
              + +++   D  K   E 
Sbjct: 122 LGYHNIDVRVGDGSKGWPEA 141


>gi|215425092|ref|ZP_03423011.1| hypothetical protein MtubT9_01345 [Mycobacterium tuberculosis T92]
 gi|215432813|ref|ZP_03430732.1| hypothetical protein MtubE_19628 [Mycobacterium tuberculosis
           EAS054]
 gi|219559930|ref|ZP_03539006.1| hypothetical protein MtubT1_22422 [Mycobacterium tuberculosis T17]
 gi|260198884|ref|ZP_05766375.1| hypothetical protein MtubT4_01759 [Mycobacterium tuberculosis T46]
 gi|289441270|ref|ZP_06431014.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289572085|ref|ZP_06452312.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289748363|ref|ZP_06507741.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289755965|ref|ZP_06515343.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289414189|gb|EFD11429.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289545839|gb|EFD49487.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289688950|gb|EFD56379.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289696552|gb|EFD63981.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
          Length = 191

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G   +EIG G G   Q LL L A  +  +E D      L      +  R  II+ D    
Sbjct: 35  GPRTLEIGPGYGATLQALLGLTA-SLTAVEVDNSMVERLNRR---YGQRARIIRGDG--- 87

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
                 +      +   + +++ +  L + + A+ + 
Sbjct: 88  TQTGLPDDHFTSVVCFTMLHHVASAQLQDQLFAEAYR 124


>gi|308373839|ref|ZP_07433804.2| hypothetical protein TMFG_02067 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375001|ref|ZP_07442352.2| hypothetical protein TMGG_01378 [Mycobacterium tuberculosis
           SUMu007]
 gi|308344024|gb|EFP32875.1| hypothetical protein TMFG_02067 [Mycobacterium tuberculosis
           SUMu006]
 gi|308347810|gb|EFP36661.1| hypothetical protein TMGG_01378 [Mycobacterium tuberculosis
           SUMu007]
          Length = 189

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G   +EIG G G   Q LL L A  +  +E D      L      +  R  II+ D    
Sbjct: 33  GPRTLEIGPGYGATLQALLGLTA-SLTAVEVDNSMVERLNRR---YGQRARIIRGDG--- 85

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
                 +      +   + +++ +  L + + A+ + 
Sbjct: 86  TQTGLPDDHFTSVVCFTMLHHVASAQLQDQLFAEAYR 122


>gi|220923492|ref|YP_002498794.1| type I restriction-modification system methyltransferase
           subunit-like protein [Methylobacterium nodulans ORS
           2060]
 gi|219948099|gb|ACL58491.1| type I restriction-modification system methyltransferase
           subunit-like protein [Methylobacterium nodulans ORS
           2060]
          Length = 254

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +   +   +    G+ V+E  AG G L       GA  V   E D +    L +I   
Sbjct: 88  PELAAHVVALADIHPGMFVLEPSAGNGALAIPAADAGAD-VQCFELDPKRAFALSEIG-- 144

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            P R ++   D + V      +     R++ N PY+
Sbjct: 145 -PGRFDVTCCDFVAVPPAPVND-----RVVMNPPYS 174


>gi|126726040|ref|ZP_01741882.1| N-6 Adenine-specific DNA methylase [Rhodobacterales bacterium
           HTCC2150]
 gi|126705244|gb|EBA04335.1| N-6 Adenine-specific DNA methylase [Rhodobacterales bacterium
           HTCC2150]
          Length = 246

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A +  +  G TV+E+G G G  +  L++     V  +E    +  + +  ++++   ++I
Sbjct: 32  AAACLAKPGQTVLELGCGVGVASLCLMSRVDVSVTGLELQSDYAALARQNAARNQFEMDI 91

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYN 128
           I+ D   +  E      S   +IAN PY 
Sbjct: 92  IEGDIAALPSE--LREQSFDHVIANPPYY 118


>gi|15610968|ref|NP_218349.1| hypothetical protein Rv3832c [Mycobacterium tuberculosis H37Rv]
 gi|31795006|ref|NP_857499.1| hypothetical protein Mb3862c [Mycobacterium bovis AF2122/97]
 gi|121639750|ref|YP_979974.1| hypothetical protein BCG_3895c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148663700|ref|YP_001285223.1| hypothetical protein MRA_3872 [Mycobacterium tuberculosis H37Ra]
 gi|148825039|ref|YP_001289793.1| hypothetical protein TBFG_13866 [Mycobacterium tuberculosis F11]
 gi|167969947|ref|ZP_02552224.1| hypothetical protein MtubH3_18728 [Mycobacterium tuberculosis
           H37Ra]
 gi|215405887|ref|ZP_03418068.1| hypothetical protein Mtub0_19803 [Mycobacterium tuberculosis
           02_1987]
 gi|215448178|ref|ZP_03434930.1| hypothetical protein MtubT_20349 [Mycobacterium tuberculosis T85]
 gi|218755620|ref|ZP_03534416.1| hypothetical protein MtubG1_20299 [Mycobacterium tuberculosis GM
           1503]
 gi|224992245|ref|YP_002646935.1| hypothetical protein JTY_3897 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800880|ref|YP_003033882.1| hypothetical protein TBMG_04119 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233321|ref|ZP_04926647.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254366376|ref|ZP_04982420.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552948|ref|ZP_05143395.1| hypothetical protein Mtube_21319 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260184760|ref|ZP_05762234.1| hypothetical protein MtubCP_01707 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260203039|ref|ZP_05770530.1| hypothetical protein MtubK8_01797 [Mycobacterium tuberculosis K85]
 gi|289445433|ref|ZP_06435177.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289556099|ref|ZP_06445309.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289572484|ref|ZP_06452711.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289747673|ref|ZP_06507051.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289759999|ref|ZP_06519377.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289764018|ref|ZP_06523396.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294993039|ref|ZP_06798730.1| hypothetical protein Mtub2_00660 [Mycobacterium tuberculosis 210]
 gi|297636515|ref|ZP_06954295.1| hypothetical protein MtubK4_20420 [Mycobacterium tuberculosis KZN
           4207]
 gi|297733510|ref|ZP_06962628.1| hypothetical protein MtubKR_20565 [Mycobacterium tuberculosis KZN
           R506]
 gi|313660841|ref|ZP_07817721.1| hypothetical protein MtubKV_20560 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1781125|emb|CAB06209.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31620604|emb|CAD96048.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121495398|emb|CAL73885.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124603114|gb|EAY61389.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134151888|gb|EBA43933.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507852|gb|ABQ75661.1| hypothetical protein MRA_3872 [Mycobacterium tuberculosis H37Ra]
 gi|148723566|gb|ABR08191.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224775361|dbj|BAH28167.1| hypothetical protein JTY_3897 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253322384|gb|ACT26987.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289418391|gb|EFD15592.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289440731|gb|EFD23224.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289536915|gb|EFD41493.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289688201|gb|EFD55689.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289711524|gb|EFD75540.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289715563|gb|EFD79575.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|326905669|gb|EGE52602.1| hypothetical protein TBPG_03629 [Mycobacterium tuberculosis W-148]
 gi|328460608|gb|AEB06031.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 191

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G   +EIG G G   Q LL L A  +  +E D      L      +  R  II+ D    
Sbjct: 35  GPRTLEIGPGYGATLQALLGLTA-SLTAVEVDNSMVERLNRR---YGQRARIIRGDG--- 87

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
                 +      +   + +++ +  L + + A+ + 
Sbjct: 88  TQTGLPDDHFTSVVCFTMLHHVASAQLQDQLFAEAYR 124


>gi|318040241|ref|ZP_07972197.1| precorrin-6B methylase [Synechococcus sp. CB0101]
          Length = 204

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH-PNRLE 98
                     V ++G G G L   +  L  A +V  +E+D +   +LK  + +     L 
Sbjct: 42  AHLRPRPDSLVWDVGGGTGALALEIARLMPAGQVHTLERDPEAIELLKRNARRFGATNLH 101

Query: 99  IIQDDA 104
           I   DA
Sbjct: 102 IHAGDA 107


>gi|317509270|ref|ZP_07966891.1| methyltransferase domain-containing protein [Segniliparus rugosus
           ATCC BAA-974]
 gi|316252480|gb|EFV11929.1| methyltransferase domain-containing protein [Segniliparus rugosus
           ATCC BAA-974]
          Length = 188

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G   +EIG G G   ++L+    R +  +E D      L+    QH +R +I+Q D   +
Sbjct: 35  GENTLEIGPGYGANLKVLVDQTER-LTAVEIDPVMAADLER---QHGSRAKILQGDGTDL 90

Query: 108 DFEK 111
           D   
Sbjct: 91  DLPD 94


>gi|298709851|emb|CBJ26191.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 268

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D+++++ I + +G      + ++G G G +          K   +E ++      +   +
Sbjct: 46  DMDVVRAIIDFAGVTADDVLYDLGCGDGRICIEAAESRGAKACGVEIEEDLAEKFRRRVA 105

Query: 92  Q--HPNRLEIIQDDALKVDFEK 111
                +++ ++  D   VD   
Sbjct: 106 AKGLNSKVSVVHGDLRDVDLSD 127


>gi|297160364|gb|ADI10076.1| methyltransferase small [Streptomyces bingchenggensis BCW-1]
          Length = 350

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           +  +AE+    D     +IG G G L  +L   G  +V+  ++D +     ++  ++   
Sbjct: 160 VDLVAEAPLPGDSSLAYDIGTGTGVLAAVLARRGVGRVVATDQDPRALACARENIARLGL 219

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             R++++++D         F       ++ N P+
Sbjct: 220 AGRVDVVRED--------LFPGGRAPLVVCNPPW 245


>gi|261409586|ref|YP_003245827.1| family 2 glycosyl transferase [Paenibacillus sp. Y412MC10]
 gi|261286049|gb|ACX68020.1| glycosyl transferase family 2 [Paenibacillus sp. Y412MC10]
          Length = 1106

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  ++E G   G +TQ L       V  +E D     I    +SQ  +++ +   D 
Sbjct: 22  VKPGSRILEFGPALGYMTQYLKEELGCIVYCVEIDPDAASI----ASQFCDKMIVADLDE 77

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTR 132
           L+    +         I A++  ++   
Sbjct: 78  LEHWGSQLGEQQFDFLIFADVLEHLRDP 105


>gi|91788503|ref|YP_549455.1| protein-L-isoaspartate O-methyltransferase [Polaromonas sp. JS666]
 gi|122967737|sp|Q12A85|PIMT1_POLSJ RecName: Full=Protein-L-isoaspartate O-methyltransferase 1;
           AltName: Full=L-isoaspartyl protein carboxyl
           methyltransferase 1; AltName: Full=Protein L-isoaspartyl
           methyltransferase 1; AltName:
           Full=Protein-beta-aspartate methyltransferase 1;
           Short=PIMT 1
 gi|91697728|gb|ABE44557.1| protein-L-isoaspartate O-methyltransferase [Polaromonas sp. JS666]
          Length = 236

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K + Q F     I+  + +        TV+EIG G G  T +L  L A+ V  IE  ++ 
Sbjct: 82  KTISQPF-----IVAVMTDLLELRPTDTVLEIGTGLGYQTAILAEL-AQHVYSIEIIEEM 135

Query: 83  FPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
               +   ++H    ++I   +      E   +      I+   P  I   L++  
Sbjct: 136 AVQARQRLARHGYTNVDIKIGNGCGGWPE---HAPFDKVIVTAAPDLIPPPLIYQL 188


>gi|298527307|ref|ZP_07014716.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298497101|gb|EFI32395.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 116

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G   +EIG G G   Q LL L A  +  +E D      L      +  R  II+ D
Sbjct: 35  GPRTLEIGPGYGATLQALLGLTA-SLTAVEVDNSMVERLNRR---YGQRARIIRGD 86


>gi|226948213|ref|YP_002803304.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum A2 str. Kyoto]
 gi|226842276|gb|ACO84942.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 193

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS 90
           D+ IL          +   V+++GAG G+++    T+  + +V  IEKD++   I+K   
Sbjct: 20  DIRILS--ISKMNLEENSKVLDVGAGTGSVSIQAATICKKGRVFAIEKDEEALDIIKKNK 77

Query: 91  SQHP-NRLEIIQDDALKVD 108
            +     ++II+ DALKV+
Sbjct: 78  EKFNCGNIKIIEGDALKVE 96


>gi|148556274|ref|YP_001263856.1| phospholipid N-methyltransferase-like protein [Sphingomonas
           wittichii RW1]
 gi|148501464|gb|ABQ69718.1| Phospholipid N-methyltransferase-like protein [Sphingomonas
           wittichii RW1]
          Length = 189

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 33  LNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI 89
            ++ + I  ++        VIE+G G G  T+ LL  G ++  ++++E +  F  +L+  
Sbjct: 26  PSLARLI--TAEITPDMAPVIELGPGTGVFTKALLERGLQQSDLVLVENEADFARLLETR 83

Query: 90  SSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLP 126
             Q      I++ DA +V      F        I+ LP
Sbjct: 84  FPQA----RILRGDAARVRRHRALFGGELAGATISGLP 117


>gi|160872348|ref|ZP_02062480.1| methyltransferase type 11 [Rickettsiella grylli]
 gi|159121147|gb|EDP46485.1| methyltransferase type 11 [Rickettsiella grylli]
          Length = 185

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 12/107 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ 92
           + ++I  S        ++E+GAG G +T  L++      ++IVIE+  +    L     Q
Sbjct: 32  LTEQIIGS----PPGVIVELGAGTGAITAALMSQKKFFHQLIVIERSVKLSSHLMQRFPQ 87

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLP-YNIGTRLLFNW 137
               L IIQ DA ++      +IS PI  I+++LP   + +  L   
Sbjct: 88  ----LNIIQGDACELHRLIRHSISDPIQAIVSSLPLRTLSSSFLKKM 130


>gi|194390488|dbj|BAG62006.1| unnamed protein product [Homo sapiens]
          Length = 137

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
                ++E   GPG LTQ LL  GA KV+ +E D+ F P L+
Sbjct: 94  RPPHLLLECNPGPGILTQALLEAGA-KVVALESDKTFIPHLE 134


>gi|302875815|ref|YP_003844448.1| Methyltransferase type 11 [Clostridium cellulovorans 743B]
 gi|307689249|ref|ZP_07631695.1| Methyltransferase type 11 [Clostridium cellulovorans 743B]
 gi|302578672|gb|ADL52684.1| Methyltransferase type 11 [Clostridium cellulovorans 743B]
          Length = 203

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 18/135 (13%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            S        V+E+G G G +   +L  G ++ + I+   +     K+  S++ N +++I
Sbjct: 42  NSLDLNKDKNVLEVGIGTGRVAVQVLNKGCKEFVGIDISPKTIKKAKENLSKY-NNVQLI 100

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE--V 158
           + + L       F+I             I + L F  +  +      +++    +KE   
Sbjct: 101 EQNILTFIRPNQFDI-------------IYSVLTF--LHIEDKALALKNIYSSLKKEGYF 145

Query: 159 GERITAQKNSPHYGR 173
              I+   N   YGR
Sbjct: 146 ILSISKDDNWLDYGR 160


>gi|209963954|ref|YP_002296869.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW]
 gi|262825439|sp|B6IRH0|RSMH_RHOCS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209957420|gb|ACI98056.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW]
          Length = 329

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L    +  ++ ++    DG  +++   G G  T  LL   A  V  I++D         +
Sbjct: 15  LHIPVLRDEVVDALAPRDGAVLVDGTFGAGGYTAALLASAACTVWAIDRDPAAVARGHAL 74

Query: 90  SSQHPNRLEIIQDDA 104
           +++HP RL ++    
Sbjct: 75  AARHPGRLTVLDGTF 89


>gi|188578506|ref|YP_001915435.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188522958|gb|ACD60903.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 223

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPN 95
           ++ ++     G  V+E+G G G  T  L TL AR+V+ +E D       +    +    +
Sbjct: 75  RMLQALDLQPGEDVLEVGTGSGFATACLATL-AREVVSLEIDPALAVAARANLDRTGLGS 133

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            + I   D      E+ F+       +  LP
Sbjct: 134 NVRIETADVFCWQSERRFDAICVTGAVDTLP 164


>gi|326433542|gb|EGD79112.1| arginine N-methyltransferase [Salpingoeca sp. ATCC 50818]
          Length = 443

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
              G  V+EIG G G L  +  + GA+ V  IE ++    + +    ++   +++ +I 
Sbjct: 150 VKPGDVVLEIGTGSGLLAMLAASAGAKHVYTIEANRHLAALARKIIRANNLQDKITVIN 208


>gi|319792664|ref|YP_004154304.1| type I restriction-modification system methyltransferase
           subunit-like protein [Variovorax paradoxus EPS]
 gi|315595127|gb|ADU36193.1| type I restriction-modification system methyltransferase
           subunit-like protein [Variovorax paradoxus EPS]
          Length = 255

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 14/94 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I ++   ++    G  V+E  AG G + ++L   GA          +   +L + +S+  
Sbjct: 97  IARRAVAAAHIQPGALVLEPSAGHGAIARILRAAGATV--------RCIELLPENASELV 148

Query: 95  NR-LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            +   + + D L V     ++     R++ N P+
Sbjct: 149 GQGFNVQEADFLTVAPTAIYD-----RVVMNPPF 177


>gi|121582510|ref|YP_974042.1| methyltransferase type 11 [Acidovorax sp. JS42]
 gi|120608568|gb|ABM44307.1| Methyltransferase type 11 [Acidovorax sp. JS42]
          Length = 658

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++  ++ E +    G+ V+E  AG G + + L      +V+ +E +      L       
Sbjct: 504 DLAARMVELADIEPGMRVLEPSAGTGRILEQLPEGC--EVVAVEINAALGGRL------D 555

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +R  ++  D L+   E  +      RI+ N P+     +
Sbjct: 556 ADRRAVVIGDFLQCTPETLWGSFD--RIVMNPPFANADDI 593


>gi|116623443|ref|YP_825599.1| glycosyl transferase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226605|gb|ABJ85314.1| glycosyl transferase, family 2 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 467

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N  + +A++     G  V+EIGAG GNL+++L+  G ++ +  + D +    L+   S 
Sbjct: 252 PNFNRWMADTIRPYIGKYVLEIGAGIGNLSRILMG-GRKRYVATDLDAEHLERLRARLST 310

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            P+    I D A   D   F      +  +  +
Sbjct: 311 RPHLETAILDAARAEDGLPFRGQMDTVVCLNVV 343


>gi|220926675|ref|YP_002501977.1| phospholipid N-methyltransferase [Methylobacterium nodulans ORS
           2060]
 gi|219951282|gb|ACL61674.1| phospholipid N-methyltransferase [Methylobacterium nodulans ORS
           2060]
          Length = 208

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 6/139 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A          VIE+G G G +T  L+  G    +++++E +  F  +L+     
Sbjct: 51  LARTMASYVDPRLPGPVIELGPGTGPVTDALVRRGIEQERLVLVEYNPDFCELLRRRFP- 109

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R  I++ DA ++       ++ P     +        L              +    
Sbjct: 110 ---RATILRGDAYRMRETLRDIVTEPACATISSLPLFTKPLERRLDLLQEAHDLMQPNAP 166

Query: 153 LFQKEVGERITAQKNSPHY 171
             Q            S  Y
Sbjct: 167 FVQFTYAVVPPIPARSSDY 185


>gi|326382277|ref|ZP_08203969.1| tRNA (adenine-N(1)-)-methyltransferase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199007|gb|EGD56189.1| tRNA (adenine-N(1)-)-methyltransferase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 276

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDIS 90
            +I        G  V+E GAG G LT  LL        V+  E  +         ++   
Sbjct: 89  AQIVAEGDIFPGARVLEAGAGSGALTLSLLRAVGSEGSVLSYEVREDHAEHAVRNVETFL 148

Query: 91  SQHPNRLEIIQDDALKVDFEKFFN 114
             HP+   +   D +  D  + F+
Sbjct: 149 GGHPDNWTLKVGDLVDHDPAEQFD 172


>gi|254523505|ref|ZP_05135560.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Stenotrophomonas sp. SKA14]
 gi|219721096|gb|EED39621.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Stenotrophomonas sp. SKA14]
          Length = 215

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHPNRLE 98
           ++     G  V+EIG G G L   +  L AR V+ +E D +       +  +S     + 
Sbjct: 73  QALDLQPGDEVLEIGTGSGFLAACIGAL-ARDVLSLEIDPELAAAARARLDASGLGTNVR 131

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +   DAL    E+ F++      +  +P    +
Sbjct: 132 VEVADALSWQTERRFDVICVTGAVDVVPSQFAS 164


>gi|170701444|ref|ZP_02892400.1| methyltransferase small [Burkholderia ambifaria IOP40-10]
 gi|170133641|gb|EDT02013.1| methyltransferase small [Burkholderia ambifaria IOP40-10]
          Length = 377

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L T G  +++  ++D +     ++  ++  H +R+
Sbjct: 190 VARAPLPATSLAFDIGTGTGVLAAVLATRGVERIVATDQDPRALACARENIARLGHADRV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++++ D         F       ++ N P+
Sbjct: 250 DVVEAD--------LFPAGRAPLVVCNPPW 271


>gi|254246478|ref|ZP_04939799.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124871254|gb|EAY62970.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 434

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +++  ++D +     ++  ++  H  ++
Sbjct: 247 VARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENVARLGHAGQV 306

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       ++ N P+
Sbjct: 307 EIVEAD--------LFPAGRAPLVVCNPPW 328


>gi|257076787|ref|ZP_05571148.1| methyltransferase [Ferroplasma acidarmanus fer1]
          Length = 177

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPN 95
            KI E         +I++GAG G  +++    L   KV  IE++    P L+    +  N
Sbjct: 17  NKIVEKMDLKPDDVIIDMGAGDGFYSKLFADKLKNGKVYAIERNPDVLPHLQRNLMEMKN 76

Query: 96  RLEIIQDDALKVDFEKF 112
             E++ ++   VD + F
Sbjct: 77  -FEVVNENMCHVDIKGF 92


>gi|256810964|ref|YP_003128333.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
 gi|256794164|gb|ACV24833.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
          Length = 266

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N ++ + +         V ++G G G L  M+    A+KV  IE D   +   K+    
Sbjct: 25  KNAIESVVD-----KDDIVFDLGTGSGIL-AMIAARKAKKVYAIELDPFTYDYAKENVKI 78

Query: 93  HP-NRLEIIQDDALKVDFEKFFNI 115
           +  + +E+I+ DA + +F++  ++
Sbjct: 79  NGFDNIEVIEGDASEYNFKEKADV 102


>gi|238026431|ref|YP_002910662.1| protein-L-isoaspartate O-methyltransferase [Burkholderia glumae
           BGR1]
 gi|237875625|gb|ACR27958.1| Protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           glumae BGR1]
          Length = 217

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  ++ +        +++EIGAG G +  +L   G + V+ ++ D +    
Sbjct: 57  GQKMLA-PRVEARMLQELAVKKHESILEIGAGSGYMAALLAHRG-QHVVTVDIDPELVRF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             D    +    +E++  DA +   EK       I +   LP
Sbjct: 115 ATDNLRNNGVTNVEVVLGDAARGLPEK--GPYDVICVSGGLP 154


>gi|297570506|ref|YP_003691850.1| Methyltransferase type 12 [Desulfurivibrio alkaliphilus AHT2]
 gi|296926421|gb|ADH87231.1| Methyltransferase type 12 [Desulfurivibrio alkaliphilus AHT2]
          Length = 202

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 23/167 (13%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHP 94
           +++ + +       V+E+G G G  TQ +L       K++ IE   +F  +L+       
Sbjct: 45  RRLVDCACIRHASLVVELGPGTGGTTQAMLKAMRPDAKLLSIEITPEFVELLRR---HPD 101

Query: 95  NRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW---PPFWESL 150
            RL +    A  V +      +  P  +++ +P++     +   I    W   PP    +
Sbjct: 102 PRLNVQLGSAEHVREILHQQQLPPPDVVVSGIPFSTMPLTMGRRIIGAVWDSLPPGGLFV 161

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM-MFDISPHVFF 196
               +  V          P             +  + +F++ P  FF
Sbjct: 162 AYQVRDRVALLSRKLLGQP-------------EVELELFNVPPMRFF 195


>gi|262382061|ref|ZP_06075199.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297238|gb|EEY85168.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 193

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D   ++ I + +       ++++G G G L   LL     +++ I+   Q     +   
Sbjct: 21  HDPEKIRTILDRTNLRRNARILDVGCGTGILESYLLPYEPLQIVAIDIAGQMIEKARMKY 80

Query: 91  SQHPNRLEIIQDDALKVDFEKF 112
             HP  +E +Q+DA+  + + F
Sbjct: 81  PDHPL-IEFLQEDAMSYEGKGF 101


>gi|269125010|ref|YP_003298380.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Thermomonospora curvata DSM 43183]
 gi|268309968|gb|ACY96342.1| protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Thermomonospora curvata DSM 43183]
          Length = 380

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 7/101 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISS 91
             I+    E     DG  V+EIG G G  T  LL      +V  IE D Q          
Sbjct: 99  PGIVTTFLELLDPFDGDRVLEIGTGTG-WTAALLASRPGVQVTTIEVDAQIAERAAANLK 157

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
                + ++  D  + D +      +P   +      +   
Sbjct: 158 ATGRDVRVLVGDGAEGDPD-----GAPFDCVHVTCGVVTVP 193


>gi|308371518|ref|ZP_07425204.2| hypothetical protein TMDG_01788 [Mycobacterium tuberculosis
           SUMu004]
 gi|308336432|gb|EFP25283.1| hypothetical protein TMDG_01788 [Mycobacterium tuberculosis
           SUMu004]
          Length = 172

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G   +EIG G G   Q LL L A  +  +E D      L      +  R  II+ D    
Sbjct: 16  GPRTLEIGPGYGATLQALLGLTA-SLTAVEVDNSMVERLNRR---YGQRARIIRGDG--- 68

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
                 +      +   + +++ +  L + + A+ + 
Sbjct: 69  TQTGLPDDHFTSVVCFTMLHHVASAQLQDQLFAEAYR 105


>gi|317140650|ref|XP_001818326.2| methyltransferase [Aspergillus oryzae RIB40]
          Length = 226

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + +KI           V+++G G G LT  L     ++++ ++         +       
Sbjct: 27  LTEKIVSWLDPKPTDEVLDVGCGDGVLTAKLAPH-VKRIVGVDASPNMIEHFQKTYPHIE 85

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           + +     D   +D           ++ +N 
Sbjct: 86  SCVV----DCRHLDQVPVLTEGKFDKVFSNA 112


>gi|194246673|ref|YP_002004312.1| probable dimethyladenosine transferase [Candidatus Phytoplasma
           mali]
 gi|193807030|emb|CAP18466.1| probable dimethyladenosine transferase [Candidatus Phytoplasma
           mali]
          Length = 474

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 10/112 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            +   ++E+GAG GN+TQ L+   G + +I IE +      L+    +    L +IQ D 
Sbjct: 287 SNNKKILELGAGIGNITQYLVDKYGVQNIISIEINSDSCDFLRKRFPE----LTVIQGDV 342

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
              D +K    +S   ++ N+   I T L    +S +T       + ++ QK
Sbjct: 343 --KDVQKLLKENS--ILLTNIEGIIST-LPVTILSTETVQKLDSLIEIIMQK 389


>gi|29832426|ref|NP_827060.1| O-methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29609545|dbj|BAC73595.1| putative O-methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 387

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPI 85
            D   +  + E+     G  V+EIG G G  T ++   LG   V  +E D Q    
Sbjct: 100 TDPTTVIGMIEALDLTAGHRVLEIGTGTGYSTALMCHYLGEDNVTTVEVDPQVAAR 155


>gi|319783172|ref|YP_004142648.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169060|gb|ADV12598.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 222

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           G  +L++ + L K+ + +      +V+++G G G     +L+  A  V+ +E D      
Sbjct: 62  GSRYLMEASPLAKLIQLAEINPTDSVLDVGCGTGY-ASAILSRLAGSVVALENDSALAET 120

Query: 86  LKDISSQHP-NRLEIIQD 102
            +   S      + ++Q 
Sbjct: 121 ARSTLSSLGCGNVTVVQG 138


>gi|240141051|ref|YP_002965531.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Methylobacterium extorquens AM1]
 gi|240011028|gb|ACS42254.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Methylobacterium extorquens AM1]
          Length = 232

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +I+ ++  +   + G  V+E+G G G +T +L+ LGA  V  +E+    +  L   +  
Sbjct: 80  PSIVAQMLGALDLVPGQRVLEVGTGTGYVTALLVRLGAAHVRSLER----YEGLARAARA 135

Query: 93  HPNR 96
           H  R
Sbjct: 136 HLGR 139


>gi|120609940|ref|YP_969618.1| methyltransferase small [Acidovorax citrulli AAC00-1]
 gi|120588404|gb|ABM31844.1| methyltransferase small [Acidovorax citrulli AAC00-1]
          Length = 388

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD-DALKVDFEKF 112
           IG G G L  +L   G R+V+  ++D +     ++       RL ++   D L+ D    
Sbjct: 216 IGTGTGVLAAVLARRGVRRVVATDQDPRALACARENLQ----RLRVLPAVDILQAD---L 268

Query: 113 FNISSPIRIIANLPY 127
           F       ++ N P+
Sbjct: 269 FPPGRAPLVVCNPPW 283


>gi|220927621|ref|YP_002504530.1| methyltransferase type 11 [Clostridium cellulolyticum H10]
 gi|219997949|gb|ACL74550.1| Methyltransferase type 11 [Clostridium cellulolyticum H10]
          Length = 260

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD--ISSQHPNRL 97
           + +       V++IG G G +  +L     A K++ IE  ++   +     + ++  +RL
Sbjct: 44  DFADVKRNSKVLDIGTGSGIIPVLLAGKTKAAKIVGIEIQEEMAEMASRSVLMNRLSDRL 103

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           EI+Q D     + ++F  SS   +++N PY 
Sbjct: 104 EIVQGDI--KLYREYFRKSSFDVVVSNPPYT 132


>gi|322375416|ref|ZP_08049929.1| methyltransferase domain protein [Streptococcus sp. C300]
 gi|321279679|gb|EFX56719.1| methyltransferase domain protein [Streptococcus sp. C300]
          Length = 196

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 18/146 (12%)

Query: 23  KYMGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           K +G+N  FL D  +  KK+ +              G TV+++G G G L   L      
Sbjct: 22  KLLGENMTFLTDAGVFSKKMVDFGSQLLLKCLEVNKGETVLDVGCGYGPLGLSLAKAYGA 81

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +  +++ + +   + +  + ++     I Q +  +    KF        +I+N P   G 
Sbjct: 82  QATMVDINNRALDLAQQNAERNKVEATIFQSNIYEQVEGKF------DHVISNPPIRAGK 135

Query: 132 RLLFNWIS-ADTWPPFWESLTLLFQK 156
           +++   I  +  +      LT++ QK
Sbjct: 136 QVVHEIIEKSRDFLKDRGDLTIVIQK 161


>gi|326316088|ref|YP_004233760.1| methyltransferase small [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372924|gb|ADX45193.1| methyltransferase small [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 388

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD-DALKVDFEKF 112
           IG G G L  +L   G R+V+  ++D +     ++       RL ++   D L+ D    
Sbjct: 216 IGTGTGVLAAVLARRGVRRVVATDQDPRALACARENLQ----RLRVLPAVDILQAD---L 268

Query: 113 FNISSPIRIIANLPY 127
           F       ++ N P+
Sbjct: 269 FPPGRAPLVVCNPPW 283


>gi|148689236|gb|EDL21183.1| HemK methyltransferase family member 1, isoform CRA_b [Mus
           musculus]
          Length = 276

 Score = 45.2 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLE 98
           +  + DG  ++E+G G G +T  LL+   + +V+ ++K++    +  + +   Q  +R+ 
Sbjct: 91  AVRAQDGPLILEVGCGSGAITLSLLSQLPKSRVVAVDKEEAAVSLTHENARRLQLQDRIR 150

Query: 99  IIQDDAL-KVDFEKFFNISSPIRIIANLPY 127
           II  D   +         S    +++N PY
Sbjct: 151 IICLDITSEGCCTHLLPWSPLDLVVSNPPY 180


>gi|86741132|ref|YP_481532.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. CcI3]
 gi|86567994|gb|ABD11803.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. CcI3]
          Length = 352

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQH 93
           ++ ++ +  G   G+ V+EIG G G    +L    G+ +V  +E D       +    + 
Sbjct: 75  VVDRMLDLLGVRPGMRVLEIGTGTGYNAALLAVQAGSGQVTSMEVDPMIAGQARAALDRT 134

Query: 94  PNRLEIIQDD 103
            + + +I  D
Sbjct: 135 GHPVRVIAGD 144


>gi|296395294|ref|YP_003660178.1| type 11 methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296182441|gb|ADG99347.1| Methyltransferase type 11 [Segniliparus rotundus DSM 44985]
          Length = 186

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G   +EIG G G   ++L+      +  +E D      L+    +H +R +I+Q D
Sbjct: 33  GERTLEIGPGYGANLKVLVEKTPD-LTAVEIDPAMAADLRR---EHGSRAKILQGD 84


>gi|163853629|ref|YP_001641672.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium extorquens PA1]
 gi|163665234|gb|ABY32601.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium extorquens PA1]
          Length = 232

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +I+ ++  +     G  V+E+G G G +T +L+ LGA  V  +E+    +  L   +  
Sbjct: 80  PSIVAQMLGALDLAPGQRVLEVGTGTGYVTALLVRLGAAHVRSLER----YEGLARAARA 135

Query: 93  HPNR 96
           H  R
Sbjct: 136 HLGR 139


>gi|125974592|ref|YP_001038502.1| methyltransferase small [Clostridium thermocellum ATCC 27405]
 gi|125714817|gb|ABN53309.1| methyltransferase small [Clostridium thermocellum ATCC 27405]
          Length = 251

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           A  +    G TVI++G G G +  ++     A+ +I +E  ++   + +     +   +R
Sbjct: 38  ANFADIKKGDTVIDLGTGTGIIAILIAGKTEAKSIIGLEIQEEMAEMAQRSVKLNNLEDR 97

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++I+  D    +  + F  S    ++ N PY
Sbjct: 98  VKIVCGDI--KNSVEMFGASKFDVVVTNPPY 126


>gi|76150323|emb|CAJ01858.1| hypothetical protein [Xanthomonas albilineans]
          Length = 268

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
            L G  V+++ AG G L    ++ GA    +IE+D      L+   +  Q   ++E++Q 
Sbjct: 114 ILPGARVLDLFAGSGALGLEAVSRGAHSACLIERDPAQAAQLRATVARLQAQTQVEVVQG 173

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           DAL+   E      + I  +               + A      W
Sbjct: 174 DALRWLAEHDGAALADIAFVDPPFTAGLWEKALQRLPARLAVDAW 218


>gi|118577267|ref|YP_899507.1| hypothetical protein Ppro_3662 [Pelobacter propionicus DSM 2379]
 gi|118504772|gb|ABL01254.1| hypothetical protein Ppro_3662 [Pelobacter propionicus DSM 2379]
          Length = 569

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 16/107 (14%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQML------LTLGARKVIVIEKDQQFFPIL 86
             I   + E +    G+ V+E  AG GNL   +             V  +E +Q+    L
Sbjct: 412 PGIAAYMVELAEIEPGMDVLEPSAGTGNLIGAMGGSMFDHNPERGSVTAVEINQKLAARL 471

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           +           +   D L+   E+F       RIIAN P+  G  +
Sbjct: 472 ETEFPLTA----VHCADFLEWTGEQF------DRIIANPPFVNGADI 508


>gi|121595496|ref|YP_987392.1| methyltransferase small [Acidovorax sp. JS42]
 gi|120607576|gb|ABM43316.1| methyltransferase small [Acidovorax sp. JS42]
          Length = 390

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 40  AESSGSLDGITVI--EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPN 95
              +    G   +  EIG G G L  +L   G  +V+  E D +     +D  ++    +
Sbjct: 192 VAQAPLPPGADALAFEIGTGTGVLAAVLARRGVARVVATELDPRALACARDNLTRLGLED 251

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           R++++Q D     F           I+ N P+
Sbjct: 252 RVQLLQTDL----FPPATTFGRAPLIVCNPPW 279


>gi|222111716|ref|YP_002553980.1| methyltransferase small [Acidovorax ebreus TPSY]
 gi|221731160|gb|ACM33980.1| methyltransferase small [Acidovorax ebreus TPSY]
          Length = 390

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 40  AESSGSLDGITVI--EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPN 95
              +    G   +  EIG G G L  +L   G  +V+  E D +     +D  ++    +
Sbjct: 192 VAQAPLPPGADALAFEIGTGTGVLAAVLARRGVARVVATELDPRALACARDNLTRLGLED 251

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           R++++Q D     F           I+ N P+
Sbjct: 252 RVQLLQTDL----FPPATTFGRAPLIVCNPPW 279


>gi|167588308|ref|ZP_02380696.1| Phospholipid N-methyltransferase-like protein [Burkholderia
           ubonensis Bu]
          Length = 192

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
              +  +IA +  + +G  VIE+G G G +T+ LL  G  A +++V+E+   F   L+  
Sbjct: 31  SPRLACEIASAVPAGEG-LVIELGGGTGAVTRALLEHGIAAERLVVVERSHVFARHLQAR 89

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA----NLPYNIGTRLL 134
                  + I   DA ++D     +      +      +LP  + + ++
Sbjct: 90  FPG----VTIAHGDAAELDRLLPPDTRVDAIVSCLPLRSLPRQVVSAIV 134


>gi|297585060|ref|YP_003700840.1| methyltransferase type 11 protein [Bacillus selenitireducens MLS10]
 gi|297143517|gb|ADI00275.1| Methyltransferase type 11 [Bacillus selenitireducens MLS10]
          Length = 191

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +K      L+D      I         + +I++G+G G  T  L    +  V  ++ + +
Sbjct: 19  RKR-----LIDP---DSIVAKLDIQKKMNIIDLGSGNGLFTIPLAEKTSGDVYAVDVEPE 70

Query: 82  FFPILKDISSQHP-NRLEIIQDD 103
              IL     ++    +  +Q D
Sbjct: 71  MLGILSARVEEYGLENVGYVQAD 93


>gi|94985288|ref|YP_604652.1| methyltransferase type 11 [Deinococcus geothermalis DSM 11300]
 gi|94555569|gb|ABF45483.1| Methyltransferase type 11 [Deinococcus geothermalis DSM 11300]
          Length = 262

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V+E+GAG G +T  L   G R V+ +E   +     +  + +    L  +Q DA   
Sbjct: 48  GGPVLEVGAGTGRVTAFLARRGVR-VVGLEPSARMIERGRARAKEQGLDLTFVQGDAGSF 106

Query: 108 DFEKFFNI 115
             E+ F++
Sbjct: 107 QLEERFSL 114


>gi|294085909|ref|YP_003552669.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665484|gb|ADE40585.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 334

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +L ++ ++    +G   ++   G G  ++ LL      VI I++D      
Sbjct: 3   GQ-MLHQSVLLNEVVDALRPTNGKVYLDATFGNGGYSRALLDAADCTVIAIDRDPDAIAR 61

Query: 86  LKDISSQHPNRLEIIQDDA 104
            + + +++  R  +++   
Sbjct: 62  GQKMVAEYKPRFTLVEGCF 80


>gi|256004046|ref|ZP_05429031.1| methyltransferase small [Clostridium thermocellum DSM 2360]
 gi|281419117|ref|ZP_06250134.1| Methyltransferase type 11 [Clostridium thermocellum JW20]
 gi|255991969|gb|EEU02066.1| methyltransferase small [Clostridium thermocellum DSM 2360]
 gi|281407266|gb|EFB37527.1| Methyltransferase type 11 [Clostridium thermocellum JW20]
 gi|316941710|gb|ADU75744.1| Methyltransferase type 11 [Clostridium thermocellum DSM 1313]
          Length = 254

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           A  +    G TVI++G G G +  ++     A+ +I +E  ++   + +     +   +R
Sbjct: 41  ANFADIKKGDTVIDLGTGTGIIAILIAGKTEAKSIIGLEIQEEMAEMAQRSVKLNNLEDR 100

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++I+  D    +  + F  S    ++ N PY
Sbjct: 101 VKIVCGDI--KNSVEMFGASKFDVVVTNPPY 129


>gi|256422388|ref|YP_003123041.1| methyltransferase small [Chitinophaga pinensis DSM 2588]
 gi|256037296|gb|ACU60840.1| methyltransferase small [Chitinophaga pinensis DSM 2588]
          Length = 243

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
                +++IG G G L+ ML       +  IE D       +      P   RL++I+ D
Sbjct: 41  SPVSRILDIGTGTGLLSLMLAQQSEAAITGIELDPAAAGQARTNFDASPWKERLQVIETD 100

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           A     ++         I+ N P+  G     + +            + L Q  +  +++
Sbjct: 101 A-----KQLPAGEPYDFIVTNPPFYEGDLKSVDQLRNQAMHAITLDYSELLQV-IATQLS 154

Query: 164 AQKNSPHYGRLSVLTGW 180
           A       GR SVL  +
Sbjct: 155 AA------GRFSVLLPY 165


>gi|15843456|ref|NP_338493.1| hypothetical protein MT3940 [Mycobacterium tuberculosis CDC1551]
 gi|13883827|gb|AAK48307.1| hypothetical protein MT3940 [Mycobacterium tuberculosis CDC1551]
 gi|323717499|gb|EGB26702.1| hypothetical protein TMMG_00326 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 195

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G   +EIG G G   Q LL L A  +  +E D      L      +  R  II+ D
Sbjct: 39  GPRTLEIGPGYGATLQALLGLTA-SLTAVEVDNSMVERLNRR---YGQRARIIRGD 90


>gi|254511980|ref|ZP_05124047.1| protein-L-isoaspartate O-methyltransferase [Rhodobacteraceae
           bacterium KLH11]
 gi|221535691|gb|EEE38679.1| protein-L-isoaspartate O-methyltransferase [Rhodobacteraceae
           bacterium KLH11]
          Length = 248

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL+   L K+ ++    +   V++I    G  T  +    A  V+ +E D+      + +
Sbjct: 92  LLEPRTLAKMLDAVNISNDEVVLDIAPALGYST-AIAARMAELVVAVESDEALATEAQTL 150

Query: 90  SSQHPNRLEIIQ 101
             +      I+ 
Sbjct: 151 LMESEADNAIVH 162


>gi|220907980|ref|YP_002483291.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219864591|gb|ACL44930.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 264

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 20/132 (15%)

Query: 26  GQNF--LLDLNILKKI--------AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKV 73
            Q+F  L  L  L++           S+G       +E+GAG G++TQ L        KV
Sbjct: 9   SQHFSELERLQTLERAFDPATEQRLRSTGVTANWCCLEVGAGAGSITQWLAARVGPGGKV 68

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK--FFNISSPIRIIANLPYNIGT 131
             ++ D +F   L       PN +EII  D  +  F    F  I     +I         
Sbjct: 69  TAVDLDTRFIQTLT-----LPN-VEIISGDVRQAAFAPGTFDLIHVRYVLIHIPDVEAVL 122

Query: 132 RLLFNWISADTW 143
             LF+W+    W
Sbjct: 123 TQLFSWLKPGGW 134


>gi|170750318|ref|YP_001756578.1| phospholipid N-methyltransferase [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656840|gb|ACB25895.1| phospholipid N-methyltransferase [Methylobacterium radiotolerans
           JCM 2831]
          Length = 212

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A          V+E+G G G +T+ L+  G    ++I++E +  F  +L      
Sbjct: 53  LARTMAAYVDPRLEGPVVELGPGTGPVTEALIRRGVAPERLILVEFNPDFCRLLTHRFPG 112

Query: 93  HPNRLEIIQDDA 104
               + +IQ DA
Sbjct: 113 ----VRVIQGDA 120


>gi|86357437|ref|YP_469329.1| protein-L-isoaspartate O-methyltransferase protein [Rhizobium etli
           CFN 42]
 gi|86281539|gb|ABC90602.1| protein-L-isoaspartate O-methyltransferase protein [Rhizobium etli
           CFN 42]
          Length = 221

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           FL++ + L K+ + +       V+E+G G G  T  LL++ A  VI +E D
Sbjct: 66  FLMEASPLAKLLQLAAIGKDDFVLEVGCGTGY-TSALLSIIAGSVIALECD 115


>gi|167571422|ref|ZP_02364296.1| hypothetical protein BoklC_16389 [Burkholderia oklahomensis C6786]
          Length = 378

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +V+  ++D +      +  ++  + +++
Sbjct: 191 VARASLPSTSLAFDIGVGTGVLAVVLASRGVERVVATDQDPRALACAAENVARLGYASQV 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       ++ N P+
Sbjct: 251 EIVEAD--------LFPDGRAPLVVCNPPW 272


>gi|319653906|ref|ZP_08008000.1| hypothetical protein HMPREF1013_04619 [Bacillus sp. 2_A_57_CT2]
 gi|317394442|gb|EFV75186.1| hypothetical protein HMPREF1013_04619 [Bacillus sp. 2_A_57_CT2]
          Length = 211

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL   +IL ++A+         V+E G G GNLTQ LL  G   V+ +E        ++ 
Sbjct: 31  FLNYEHILNEVADIVN----GNVVEFGTGTGNLTQRLLEKGC-SVVGVEP----SAAMRK 81

Query: 89  ISSQHPNRLEIIQDDALKV 107
           I+S     L ++  D L  
Sbjct: 82  IASNKMPHLTLLDGDFLNF 100


>gi|149178977|ref|ZP_01857552.1| hypothetical protein PM8797T_10504 [Planctomyces maris DSM 8797]
 gi|148842176|gb|EDL56564.1| hypothetical protein PM8797T_10504 [Planctomyces maris DSM 8797]
          Length = 215

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP 94
           +K++  +       V+E+G G G  T+ LL       +++ +E   +F   L++ +    
Sbjct: 44  RKLSSLACLQTARCVVELGPGTGETTRALLEAMPADSQLLCVEVVSEFVARLQEFA---D 100

Query: 95  NRLEIIQDDALKVD-FEKFFNISSPIRIIANLPYNIGTR 132
            R+ ++++ AL +    +     +P  I++ +P+++ T 
Sbjct: 101 PRVTVVENSALALKSILQQKKFPAPEVIVSGVPFSVMTP 139


>gi|89096580|ref|ZP_01169472.1| hypothetical protein B14911_13107 [Bacillus sp. NRRL B-14911]
 gi|89088595|gb|EAR67704.1| hypothetical protein B14911_13107 [Bacillus sp. NRRL B-14911]
          Length = 190

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + +K+           ++E G G G  T+ +L        V++IE + +F+ +LK+    
Sbjct: 27  LAEKMVSDPAFGSAKLIVEYGPGTGVFTKKILEYRNSDATVLLIENNLEFYSLLKEKYQN 86

Query: 93  HPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N + I+   A K+DF  E F        I      ++   +    ++        E  
Sbjct: 87  EDN-VIIVNGSAEKIDFYIESFGLGKIDFVISGLPFASLPEPVSHAILNNTRRLLGPEGR 145

Query: 151 TLLFQKEVGER 161
            + FQ  + ++
Sbjct: 146 FITFQYTMLKK 156


>gi|167564271|ref|ZP_02357187.1| hypothetical protein BoklE_17069 [Burkholderia oklahomensis EO147]
          Length = 378

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +V+  ++D +      +  ++  + +++
Sbjct: 191 VARASLPSTSLAFDIGVGTGVLAVVLASRGVERVVATDQDPRALACAAENVARLGYASQV 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       ++ N P+
Sbjct: 251 EIVEAD--------LFPDGRAPLVVCNPPW 272


>gi|158313185|ref|YP_001505693.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. EAN1pec]
 gi|158108590|gb|ABW10787.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. EAN1pec]
          Length = 400

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKD- 88
            +++  + E +    G  ++EIG   G    L   L       V  IE D+      +  
Sbjct: 72  PDLVAAMLEQADVHPGHRILEIGTATGINAALLAELAG-PTGHVTTIEIDEDLIGGARTA 130

Query: 89  ISSQHPNRLEIIQDD 103
           +++   +++++I  D
Sbjct: 131 LAAASYDQVDVIHGD 145


>gi|254511958|ref|ZP_05124025.1| methyltransferase small [Rhodobacteraceae bacterium KLH11]
 gi|221535669|gb|EEE38657.1| methyltransferase small [Rhodobacteraceae bacterium KLH11]
          Length = 256

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +D  +L   A +  +  G +V+E+G G G  +  +L  +   +   +E    +  + +  
Sbjct: 32  VDPVLL---AAAIPANPGQSVLELGCGAGAAILCLLARVPDLQATGVEIQPAYAALARRN 88

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           ++++   L +++ D LK   +          +IAN PY 
Sbjct: 89  ATRNAAPLTVVEAD-LKALPDDLRQ-KQFDHVIANPPYY 125


>gi|325288501|ref|YP_004264682.1| type I restriction-modification system methyltransferase
           subunit-like protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963902|gb|ADY54681.1| type I restriction-modification system methyltransferase
           subunit-like protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 257

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           ++ E +   +   V+E  AG G L + +L  G R +  +E + Q    L   +      +
Sbjct: 92  RMCEMAEINEHSQVLEPSAGNGKLIEAILAAGPRSIYAVELNPQMAEGLWKYNEDPDGPV 151

Query: 98  EIIQ-DDALKVDFEKFFNISSPIRIIANLPY 127
            +++  D LK+      N     RI+ N P+
Sbjct: 152 VVVEQGDFLKL---GLANKIRVNRIVMNPPF 179


>gi|291300408|ref|YP_003511686.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
 gi|290569628|gb|ADD42593.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
          Length = 264

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + +AE +G      V+E+G G G  T  L   G R V  +E       + +   +  P+ 
Sbjct: 33  EDLAELTGLKPDDHVLELGCGTGQATVSLARQGYR-VTAVELGAGMATVARRNLASFPD- 90

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +E++       +     +    +   A   Y I
Sbjct: 91  VEVVNS---SFEDWPLPSRPFDVVFSATAFYWI 120


>gi|108804026|ref|YP_643963.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108765269|gb|ABG04151.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 214

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++ ++ E+ G      V+EIG G G  T +L  L A  V  +E+        +   S+
Sbjct: 60  PSLVARMVEALGLGGEERVLEIGTGYGFQTALLARLCA-FVWSVERHPDVAEAARQNLSR 118

Query: 93  HP-NRLEIIQDD 103
           H  +   ++  D
Sbjct: 119 HGVSNARVVVGD 130


>gi|115350455|ref|YP_772294.1| methyltransferase small [Burkholderia ambifaria AMMD]
 gi|115280443|gb|ABI85960.1| methyltransferase small [Burkholderia ambifaria AMMD]
          Length = 377

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +++  ++D +     ++  ++  H +R+
Sbjct: 190 VARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENIARLGHADRV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +I++ D         F       ++ N P+
Sbjct: 250 DIVEAD--------LFPAGRAPLVVCNPPW 271


>gi|302669919|ref|YP_003829879.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302394392|gb|ADL33297.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 719

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I E         V+E+G+G G +T  +L   A +V+  +  ++   I    +    N + 
Sbjct: 67  IVEWIPMEKDAKVLEVGSGCGAIT-GMLAQKAGEVVACDLSRRRSEINATRNQDCDN-VT 124

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           I   +   V+          I +I    Y  G
Sbjct: 125 IHIGNFRDVE-PDLPKDFDYIFLIGVFEYAQG 155


>gi|269957335|ref|YP_003327124.1| type 11 methyltransferase [Xylanimonas cellulosilytica DSM 15894]
 gi|269306016|gb|ACZ31566.1| Methyltransferase type 11 [Xylanimonas cellulosilytica DSM 15894]
          Length = 248

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           +++ ++  ++    G  V+EIG G G +   L   G  +   +E D     + +  ++  
Sbjct: 15  DVVARLVAATLPQPGARVLEIGCGQGAVGVRLA--GRHRYTGVELDGASVAVARQRATAA 72

Query: 94  PNRLEIIQDDALKVDFEKFFNIS 116
                ++      +D + F  + 
Sbjct: 73  GVDARLVHGPLATIDDDGFDLVC 95


>gi|171319068|ref|ZP_02908192.1| methyltransferase small [Burkholderia ambifaria MEX-5]
 gi|171095707|gb|EDT40663.1| methyltransferase small [Burkholderia ambifaria MEX-5]
          Length = 377

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +++  ++D +     ++  ++  H +R+
Sbjct: 190 VARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENIARLGHADRV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++++ D         F       ++ N P+
Sbjct: 250 DVVEAD--------LFPAGRAPLVVCNPPW 271


>gi|169830661|ref|YP_001716643.1| ribosomal L11 methyltransferase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637505|gb|ACA59011.1| ribosomal L11 methyltransferase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 292

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
              G  V+++G G G L      LGA +V  I+KD       ++  +Q+    R+ II+ 
Sbjct: 153 LARGARVLDVGTGSGILAVAAAKLGAGRVCAIDKDPVAIKAARETVAQNNLQGRITIIEG 212

Query: 103 DALKVDFEK 111
           + L    EK
Sbjct: 213 NLLDQVTEK 221


>gi|284036153|ref|YP_003386083.1| methyltransferase type 12 [Spirosoma linguale DSM 74]
 gi|283815446|gb|ADB37284.1| Methyltransferase type 12 [Spirosoma linguale DSM 74]
          Length = 269

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 31  LDLNILKKIAESSG------SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQF 82
            +  + ++  E++          G++V+++G G G +T+ +         V+  D  +  
Sbjct: 16  HNPVLERRTVENANRNLLKYLRPGLSVLDVGCGSGAITRSIAEKTGPTGSVLGIDPNRNL 75

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNI 115
             + +  +   P  L   Q D    D  + F++
Sbjct: 76  IELARQQAGDTPG-LNFQQADVYAFDTPERFDL 107


>gi|167563790|ref|ZP_02356706.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           oklahomensis EO147]
 gi|167570929|ref|ZP_02363803.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           oklahomensis C6786]
          Length = 217

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  ++ +         V+EIGAG G +  +L   G R V  +E D      
Sbjct: 57  GQKMLF-PRVEARVLQELAVKKHENVLEIGAGSGYMAALLAARGQR-VTTVEIDPALAKF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            ++   ++    +E+   D  +    K       I +   LP
Sbjct: 115 AEENLKKNGVTNVEVALGDGSRGWPAKA--PYDVICVSGGLP 154


>gi|323476046|gb|ADX86652.1| protein-L-isoaspartate carboxylmethyltransferase, Pcm [Sulfolobus
           islandicus REY15A]
 gi|323478769|gb|ADX84007.1| Protein-L-isoaspartate (D-aspartate)O-methyltransferase [Sulfolobus
           islandicus HVE10/4]
          Length = 236

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 19/91 (20%)

Query: 32  DLNILKK------------------IAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARK 72
           D N + K                  I +     +   V+EIG G G  T ++   +G   
Sbjct: 39  DPNYIDKPFYVTPNITTTALSLGIYILDILNLEENQKVLEIGTGIGYYTALIAEVVGENN 98

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           V+ IE D   F   K++       +++I+ D
Sbjct: 99  VVSIEIDDTMFEYAKNVLLIRYPLIKLIKMD 129


>gi|227828939|ref|YP_002830719.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sulfolobus
           islandicus M.14.25]
 gi|229586146|ref|YP_002844648.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sulfolobus
           islandicus M.16.27]
 gi|238621131|ref|YP_002915957.1| Protein-L-isoaspartate (D-aspartate)O-methyltransferase [Sulfolobus
           islandicus M.16.4]
 gi|227460735|gb|ACP39421.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sulfolobus
           islandicus M.14.25]
 gi|228021196|gb|ACP56603.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sulfolobus
           islandicus M.16.27]
 gi|238382201|gb|ACR43289.1| Protein-L-isoaspartate (D-aspartate)O-methyltransferase [Sulfolobus
           islandicus M.16.4]
          Length = 236

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 19/91 (20%)

Query: 32  DLNILKK------------------IAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARK 72
           D N + K                  I +     +   V+EIG G G  T ++   +G   
Sbjct: 39  DPNYIDKPFYVTPNITTTALSLGIYILDILNLEENQKVLEIGTGIGYYTALIAEVVGENN 98

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           V+ IE D   F   K++       +++I+ D
Sbjct: 99  VVSIEIDDTMFEYAKNVLLIRYPLIKLIKMD 129


>gi|223934893|ref|ZP_03626812.1| Methyltransferase type 12 [bacterium Ellin514]
 gi|223896346|gb|EEF62788.1| Methyltransferase type 12 [bacterium Ellin514]
          Length = 197

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDIS 90
            ++++++ +         ++E G G G +T+ +L        ++VIE +  F   LK+  
Sbjct: 37  RSLIEQLLKRVDWNSARVIVEYGPGVGTITREILLRMHPEATLVVIEMNHDFVEYLKESF 96

Query: 91  SQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
                RL +++  A +V    E+  +  +   I       +   +    +         +
Sbjct: 97  KDA--RLRVVEGSAAEVQSVLEELGHPQADYVISGIPFSTMPPSMRDEIVQRTYSVLQPK 154

Query: 149 SLTLLFQ 155
              L++Q
Sbjct: 155 GAFLVYQ 161


>gi|82703402|ref|YP_412968.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411467|gb|ABB75576.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
          Length = 225

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  +I +     +   ++E+G+G G LT +L   G + V  +E   +   + +     
Sbjct: 65  PKVEARILQELRINNTDRILEVGSGSGYLTALLAKKG-KFVHSVEIVPELAAMAEKNLRN 123

Query: 93  HP-NRLEIIQDDA 104
           H    + I   DA
Sbjct: 124 HQIANVLIENGDA 136


>gi|241888563|ref|ZP_04775871.1| O-methyltransferase [Gemella haemolysans ATCC 10379]
 gi|241864830|gb|EER69204.1| O-methyltransferase [Gemella haemolysans ATCC 10379]
          Length = 215

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 13/146 (8%)

Query: 35  ILKKI-----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           I+ KI      +         ++EIG   G  +  L       V  IE+D + +   K+ 
Sbjct: 37  IIDKIGIRFLIQMLKVKKAKNLLEIGTAIGYTSIKLAEKIGCNVTTIERDDKMYNQAKNN 96

Query: 90  SSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
             +    +++ ++  DAL++  E   N    +  I        +R  F        P F 
Sbjct: 97  IEKRNLTDKITLLHADALELQDEVVTNAPYDVVFIDGAKSQ--SRKFFELYE----PYFA 150

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGR 173
           E + ++    + + + A  +   + R
Sbjct: 151 EDVVVITDNVLFKGMVADPSIIKHSR 176


>gi|325915121|ref|ZP_08177447.1| 16S rRNA m(2)G-966 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538643|gb|EGD10313.1| 16S rRNA m(2)G-966 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 207

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L+++ ++    ++++++Q+D
Sbjct: 55  LRGARVLDLFAGSGALGLEAVSRGAAHATLIERDPGLAQRLRELVTRLDAADQVQVLQED 114

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           AL+   E+     + I  +           +   + A      W
Sbjct: 115 ALR-WLERAPAAQADIVFVDPPFAAGLWPSVLERLPAHLAAEAW 157


>gi|254508234|ref|ZP_05120358.1| SmtA protein [Vibrio parahaemolyticus 16]
 gi|219548851|gb|EED25852.1| SmtA protein [Vibrio parahaemolyticus 16]
          Length = 235

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHP--NRLEI 99
           +       +++IG G G L  M         I  I+ DQ          S  P  +RL +
Sbjct: 34  ANLSQVDFLLDIGTGTGLLALMCAQRKPTLTIDAIDIDQNACDAAISNFSNSPWQDRLTL 93

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            Q D L  +F   F+      II N PY   
Sbjct: 94  HQGDILNAEFSHRFD-----AIICNPPYFNS 119


>gi|134046293|ref|YP_001097778.1| hypothetical protein MmarC5_1266 [Methanococcus maripaludis C5]
 gi|132663918|gb|ABO35564.1| domain of unknown function DUF1738 [Methanococcus maripaludis C5]
          Length = 660

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 13/93 (13%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I+K + + +   +   ++E  AG G++ +++      K   IE + +   IL        
Sbjct: 503 IIKNMIDQAEIKENDKILEPSAGKGDIAELIKEETGIKADCIEINPRLQNILNKKG---- 558

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              E ++ D L+ +           +II N P+
Sbjct: 559 --FETLESDFLEFN-------GKYDKIIMNPPF 582


>gi|172059488|ref|YP_001807140.1| methyltransferase small [Burkholderia ambifaria MC40-6]
 gi|171992005|gb|ACB62924.1| methyltransferase small [Burkholderia ambifaria MC40-6]
          Length = 377

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +++  ++D +     ++  ++  H +R+
Sbjct: 190 VARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENIARLGHADRV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++++ D         F       ++ N P+
Sbjct: 250 DVVEAD--------LFPAGRAPLVVCNPPW 271


>gi|285018711|ref|YP_003376422.1| methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283473929|emb|CBA16430.1| putative methyltransferase protein [Xanthomonas albilineans]
          Length = 201

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
            L G  V+++ AG G L    ++ GA    +IE+D      L+   +  Q   ++E++Q 
Sbjct: 47  ILPGARVLDLFAGSGALGLEAVSRGAHSACLIERDPAQAAQLRATVARLQAQTQVEVVQG 106

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           DAL+   E      + I  +               + A      W
Sbjct: 107 DALRWLAEHDGAALADIAFVDPPFTAGLWETALQRLPARLAVDAW 151


>gi|110347000|ref|YP_665818.1| FkbM family methyltransferase [Mesorhizobium sp. BNC1]
 gi|110283111|gb|ABG61171.1| methyltransferase FkbM family [Chelativorans sp. BNC1]
          Length = 234

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           ++I  +     G  V+E+GAG G +T ++  +   +V   E D Q   + K +
Sbjct: 36 ARRIPRAI--RPGDRVLELGAGLGVITSIIAAIDDVRVWSFEADPQTVQLAKRV 87


>gi|126732775|ref|ZP_01748570.1| protein-L-isoaspartate O-methyltransferase [Sagittula stellata
           E-37]
 gi|126706771|gb|EBA05842.1| protein-L-isoaspartate O-methyltransferase [Sagittula stellata
           E-37]
          Length = 208

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LLD  +  K+ ++    +   V+++G+G G  +  ++   A  V+ +E D+      + +
Sbjct: 52  LLDPRVFSKMLDALDISNADLVLDVGSGLGY-SAAVIARIAEAVVAVEDDETRASEAQSL 110

Query: 90  SSQ-HPNRLEIIQD 102
            S+ H + + + + 
Sbjct: 111 LSEHHADNVVLHEG 124


>gi|78485413|ref|YP_391338.1| protein-L-isoaspartate O-methyltransferase [Thiomicrospira
           crunogena XCL-2]
 gi|78363699|gb|ABB41664.1| hypothetical protein Tcr_1069 [Thiomicrospira crunogena XCL-2]
          Length = 667

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISS 91
             I+  + E+ G   G  V+EIG G G    +L  + AR+V  +E+ ++      + +S 
Sbjct: 64  PYIVGYMIEALGLKGGEKVLEIGGGSGYAAAVLAEI-ARQVYTVERIEELAEKAAQSLSQ 122

Query: 92  QHPNRLEIIQDD 103
           +  + + +I  D
Sbjct: 123 EGYDNVTVISGD 134


>gi|91776881|ref|YP_546637.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacillus flagellatus KT]
 gi|91710868|gb|ABE50796.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacillus flagellatus KT]
          Length = 218

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPN 95
           +I +S        V+EIG G G  T  LL   A++V  +E + +      LK +  Q  +
Sbjct: 70  RILQSLEIKPTDKVLEIGTGSGYFT-ALLASLAQEVHSVEINAELSNQAHLK-LLQQQIH 127

Query: 96  RLEIIQDD 103
            + +   D
Sbjct: 128 NVTLHIGD 135


>gi|307328504|ref|ZP_07607679.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
 gi|306885916|gb|EFN16927.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
          Length = 231

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 27/192 (14%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPN 95
            ++ ++    DG  V+EIGAG G    +L    G   V  ++ D +     ++  +    
Sbjct: 2   ARMLQALQVRDGDRVLEIGAGTGYNAALLAHRLGDTHVTTLDLDPEITEAARNHLAAAGF 61

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES--LTLL 153
           R  ++  D  +            I     +       +   W+          +   T L
Sbjct: 62  RPAVVTGDGAR--GCPLHAPYDRIIATCAV-----ASIPSAWLGQCRPGALILTPLATGL 114

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213
               V +   A+      G    +  +         +      P P+V +   H +P   
Sbjct: 115 IALRVADARHAE------GHFLAMPAYF--------VPLRGSGPPPQVPT---HGLPSRP 157

Query: 214 PIPCCLESLKKI 225
            +      L  +
Sbjct: 158 LLDDSFRFLLNV 169


>gi|190346593|gb|EDK38715.2| hypothetical protein PGUG_02814 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 447

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPN 95
           +K  + +      +V+  G G G L Q+++ + + K+  +EK+ Q   ILK+ ++ +  +
Sbjct: 280 EKAIKLALKSTAKSVLVAGPGRGPLLQIVVEMSSAKITGVEKNPQCIDILKERNAHEWQD 339

Query: 96  RLEIIQDDALKV 107
           R+EI+  DA +V
Sbjct: 340 RVEIVHKDAREV 351


>gi|146418237|ref|XP_001485084.1| hypothetical protein PGUG_02814 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 447

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPN 95
           +K  + +      +V+  G G G L Q+++ + + K+  +EK+ Q   ILK+ ++ +  +
Sbjct: 280 EKAIKLALKSTAKSVLVAGPGRGPLLQIVVEMSSAKITGVEKNPQCIDILKERNAHEWQD 339

Query: 96  RLEIIQDDALKV 107
           R+EI+  DA +V
Sbjct: 340 RVEIVHKDAREV 351


>gi|170748698|ref|YP_001754958.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655220|gb|ACB24275.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 215

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 52/165 (31%), Gaps = 23/165 (13%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            + +  +        G  V+EIG G G +T +L  LGA  V+ +E+            + 
Sbjct: 68  PSTVALMLAQLRLEPGQRVLEIGTGSGYVTALLAQLGAGAVLSLERYTSLAGAATRRLAA 127

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
               + +++ D L  D          I +  ++P                 PP W +   
Sbjct: 128 LSE-VHVVRADGLAPDLPD--GGFDRILVHGSVP---------------AIPPHWRAAL- 168

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
               E G R+          R++VLT           +      P
Sbjct: 169 ----EPGGRLVTGMGGGGACRIAVLTTPEADPEPGAPVRLAALVP 209


>gi|15988002|pdb|1I4W|A Chain A, The Crystal Structure Of The Transcription Factor Sc-Mttfb
           Offers Intriguing Insights Into Mitochondrial
           Transcription
          Length = 353

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 104/341 (30%), Gaps = 82/341 (24%)

Query: 1   MTMNNKSHSLKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT------V 51
           M  +     +K I      Y           +L +  +  KI +               V
Sbjct: 11  MASSVPIPGIKDISKLKFFYGFK--------YLWNPTVYNKIFDKLDLTKTYKHPEELKV 62

Query: 52  IEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK---- 106
           +++  G G  + +       R+  ++EK    +  L       P  L+I++ D       
Sbjct: 63  LDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSP--LQILKRDPYDWSTY 120

Query: 107 ---VDFEKFF--------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----L 150
              +D E+ F        +I+     +AN+       L+  W+S      +        +
Sbjct: 121 SNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKM 180

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD--------------------- 189
            L        ++ A+       + SV+    T   ++                       
Sbjct: 181 LLWMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPIL 240

Query: 190 ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR---KTLRQSL----- 241
            S    +P+      ++   P        +++   +T+     +R    T+  SL     
Sbjct: 241 FSAAEIWPTKGKPIALVEMDPID--FDFDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQ 298

Query: 242 ----KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
                R+  ++LL +  I+       L+ ++F  +T +  +
Sbjct: 299 QYFNSRITDKDLLKKCPID-------LTNDEFIYLTKLFME 332


>gi|332188484|ref|ZP_08390206.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Sphingomonas sp. S17]
 gi|332011496|gb|EGI53579.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Sphingomonas sp. S17]
          Length = 399

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 29  FLLDLNILKKIAESSG-----SLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQF 82
           F  D  I K+   +          G  + +IG G G++  + LL+      I  E+D   
Sbjct: 228 FAHDGQITKRPVRALALSALAPRPGELLWDIGTGSGSVAIEWLLSDPTTHAIGFERDSDR 287

Query: 83  FPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRII 122
                D +++    RLE+++ DA+     +  +   P  + 
Sbjct: 288 LARAADNAARLGVARLELVEGDAV----AELADRPLPDAVF 324


>gi|120612220|ref|YP_971898.1| cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax citrulli
           AAC00-1]
 gi|120590684|gb|ABM34124.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax citrulli
           AAC00-1]
          Length = 377

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           L++IA+      G  V+EIG G G L Q +   GAR
Sbjct: 149 LERIAQHLALEPGDDVLEIGCGWGALAQDMAQRGAR 184


>gi|300712208|ref|YP_003738022.1| N-methyltransferase-like protein [Halalkalicoccus jeotgali B3]
 gi|299125891|gb|ADJ16230.1| N-methyltransferase-like protein [Halalkalicoccus jeotgali B3]
          Length = 235

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD- 88
           L+D    + ++ + G L+G  V+EI  G G  T ML   GA  V +   D       +  
Sbjct: 27  LIDRREKEAVSSALGDLEGKKVLEIACGTGRFTAMLAARGAEVVGLDISDAMLSQGREKA 86

Query: 89  ISSQHPNRLEIIQDDALKVDFEK-FFNISSPIRIIANLPY 127
             +    R+E ++ DA ++ F    F+    +R    +P 
Sbjct: 87  RVAGLSERVEFVRGDAARLPFPDGHFDAVLAMRFFHLIPN 126


>gi|294935280|ref|XP_002781364.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
           [Perkinsus marinus ATCC 50983]
 gi|239891945|gb|EER13159.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
           [Perkinsus marinus ATCC 50983]
          Length = 225

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N L  +       D +  +++GAG G  T+ L      KV   E    F   LK+ S  
Sbjct: 46  KNHLDNVLHILDLKDNMVSVDVGAGTGLFTRELAKCAGAKVYATEISPGFLEYLKEDSRL 105

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
             NR+ +I+     +   +    +  + ++ ++ +++   
Sbjct: 106 DKNRVHLIKCTEESLCLPEEVKGTVDLVLVCDVYHHLTHP 145


>gi|238484621|ref|XP_002373549.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220701599|gb|EED57937.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 280

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + +KI           V+++G G G LT  L     ++++ ++         +       
Sbjct: 27  LTEKIVSWLDPKPTDEVLDVGCGDGVLTAKLAPH-VKRIVGVDASPNMIEHFQKTYPHIE 85

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           + +     D   +D           ++ +N 
Sbjct: 86  SCVV----DCRHLDQVSVLTEGKFAKVFSNA 112


>gi|170744317|ref|YP_001772972.1| phospholipid N-methyltransferase [Methylobacterium sp. 4-46]
 gi|168198591|gb|ACA20538.1| phospholipid N-methyltransferase [Methylobacterium sp. 4-46]
          Length = 206

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + +A          VIE+G G G +T  L+  G    +++++E +  F  +L+     
Sbjct: 49  LARTMASYVDPRRPGPVIELGPGTGPVTDALVRRGIEQERLVLVEYNPDFCDLLRRRFP- 107

Query: 93  HPNRLEIIQDDALKV 107
              R  I++ DA ++
Sbjct: 108 ---RATILRGDAYRM 119


>gi|91785360|ref|YP_560566.1| hypothetical protein Bxe_A0419 [Burkholderia xenovorans LB400]
 gi|91689314|gb|ABE32514.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 374

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK 111
           IG G G L  +L   G +K+I  ++D +     ++  ++  +  ++E++Q D        
Sbjct: 202 IGTGTGVLAALLAKRGVKKIIATDQDPRALACARENLTRLGYDRQVEVVQAD-------- 253

Query: 112 FFNISSPIRIIANLPY 127
            F       ++ N P+
Sbjct: 254 LFPEGRAPLVVCNPPW 269


>gi|84516019|ref|ZP_01003380.1| Protein-L-isoaspartate carboxylmethyltransferase [Loktanella
           vestfoldensis SKA53]
 gi|84510461|gb|EAQ06917.1| Protein-L-isoaspartate carboxylmethyltransferase [Loktanella
           vestfoldensis SKA53]
          Length = 208

 Score = 44.8 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
              L K+ E +    G   ++IG G G  T +L +L    V+ IE D       + + S 
Sbjct: 55  PRTLAKMLELADVQPGHVALDIGCGLGYSTAILASLC-DFVVAIEDDTARAEEAQSLLSG 113

Query: 93  H 93
           H
Sbjct: 114 H 114


>gi|315222903|ref|ZP_07864782.1| methyltransferase small domain protein [Streptococcus anginosus
           F0211]
 gi|315187853|gb|EFU21589.1| methyltransferase small domain protein [Streptococcus anginosus
           F0211]
          Length = 197

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 30/174 (17%)

Query: 25  MGQN--FLLDLNI-LKKIAES--------SGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQN  FL D  +  KK+ +                +V+++G G G L   L+     K 
Sbjct: 24  LGQNMTFLTDAGVFSKKMIDYGSQTLLKCLDFHKQESVLDVGCGYGTLGLTLIKAKEVKA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +Q+   + +  + ++     I Q +  +    +F        II+N P   G ++
Sbjct: 84  TLVDINQRALDLARQNADRNQVLATIFQSNIYQNVEGRF------HHIISNPPIRAGKQV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK------------EVGERITAQKNSPHYGRL 174
           +   I+           LT++ QK            EV       K    Y  L
Sbjct: 138 VHEVIAGSYAHLLDGGDLTIVIQKKQGAPSAKAKMEEVFGNCEILKKDKGYYIL 191


>gi|300790032|ref|YP_003770323.1| methyltransferase [Amycolatopsis mediterranei U32]
 gi|299799546|gb|ADJ49921.1| putative methyltransferase [Amycolatopsis mediterranei U32]
          Length = 198

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDI 89
              + +++    G      V+E+G G G  T+ +L       ++  IE + +F   L + 
Sbjct: 21  SPRLAEEMTAGLGLERASCVVELGPGTGVFTEAVLALLRPEARLTAIEINPRFAVALSER 80

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                      + D +    E        + +       +      + + A
Sbjct: 81  FP---------EADVVTGSAEHLALDGVDVVVSGLPWTAMTASRQQHILDA 122


>gi|295982525|pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
           Methyltransferase In Complex With
           S-Adenosyl-L-Methionine
          Length = 255

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD--ISSQHP 94
           I   +G   G  ++E G G G LT  L  +     +V+  E  + F  +  +    +   
Sbjct: 85  IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD 144

Query: 95  NRLEIIQDDALKVDFEK-----FFNISSPIRII 122
           +R+ I   D  +   E+       ++  P R++
Sbjct: 145 DRVTIKLKDIYEGIEEENVDHVILDLPQPERVV 177


>gi|14520646|ref|NP_126121.1| protein-l-isoaspartate methyltransferase - like [Pyrococcus abyssi
           GE5]
 gi|74547509|sp|Q9V1J7|TRMI_PYRAB RecName: Full=tRNA (adenine-N(1)-)-methyltransferase TrmI; AltName:
           Full=tRNA(m1A57/58)-methyltransferase
 gi|296278490|pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
           Methyltransferase In Complex With
           S-Adenosyl-L-Homocysteine
 gi|296278491|pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
           Methyltransferase In Complex With
           S-Adenosyl-L-Homocysteine
 gi|296278492|pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
           Methyltransferase In Complex With
           S-Adenosyl-L-Homocysteine
 gi|296278493|pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
           Methyltransferase In Complex With
           S-Adenosyl-L-Homocysteine
 gi|297343028|pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
           Methyltransferase In Complex With
           S-Adenosyl-L-Homocysteine
 gi|297343029|pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
           Methyltransferase In Complex With
           S-Adenosyl-L-Homocysteine
 gi|297343030|pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
           Methyltransferase In Complex With
           S-Adenosyl-L-Homocysteine
 gi|297343031|pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
           Methyltransferase In Complex With
           S-Adenosyl-L-Homocysteine
 gi|5457862|emb|CAB49352.1| SAM-dependent methyltransferase, putative [Pyrococcus abyssi GE5]
          Length = 253

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD--ISSQHP 94
           I   +G   G  ++E G G G LT  L  +     +V+  E  + F  +  +    +   
Sbjct: 85  IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD 144

Query: 95  NRLEIIQDDALKVDFEK-----FFNISSPIRII 122
           +R+ I   D  +   E+       ++  P R++
Sbjct: 145 DRVTIKLKDIYEGIEEENVDHVILDLPQPERVV 177


>gi|298248160|ref|ZP_06971965.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297550819|gb|EFH84685.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 300

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 30/197 (15%)

Query: 29  FLL--DLNIL---KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQ 81
           FL   D  +    K+I        G  V++ G G G +T++L        +V+ ++ + Q
Sbjct: 27  FLHLFDRFLAPLDKQIVAWLQLTPGSRVLDAGCGGGGMTRLLAGAVGSGGEVVALDANPQ 86

Query: 82  FFPILKDISSQHP--NRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGT------- 131
                +          +++  + D L + FE   F++    R+I  L   +         
Sbjct: 87  LIEWNRSHVKDTDVAGQIQFQEGDVLHLPFENGTFDLVWCSRVIHGLNDQVAGVRELARV 146

Query: 132 --RLLFNWISADTWPPFWESLTLLF-------QKEVGERITAQKNSPHYGRLSVLTGW-R 181
                   +     PP +    +         + EV     AQ+ +   G L     +  
Sbjct: 147 VRPGGRVVLREGGLPPRFLPFDVGLGDPGLEGRLEVAH---AQQFANWRGSLPNGVAYPY 203

Query: 182 TKATMMFDISPHVFFPS 198
               M+ ++      P 
Sbjct: 204 GWIHMLREVGLRSVMPR 220


>gi|291301705|ref|YP_003512983.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570925|gb|ADD43890.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Stackebrandtia nassauensis DSM 44728]
          Length = 326

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDIS 90
             I++ +   +   +G  V E+G G G  T++  T+      V+ +E D       +   
Sbjct: 31  PAIIESLLRLADIQNGHRVCEVGTGSGYSTKIAATVVGPTGAVVSVEVDPAVAARAETKL 90

Query: 91  SQHPNRLEIIQDD 103
           +  P ++ ++  D
Sbjct: 91  ADTP-QVTVMCGD 102


>gi|85813779|emb|CAF31832.1| hypothetical protein [Streptomyces hygroscopicus subsp.
           hygroscopicus]
          Length = 254

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
            G  +   V+++  GPG+L+  +L    + +V  ++ D     +  D+ +++ +R  ++ 
Sbjct: 40  LGLRESFHVLDLACGPGSLSDRILRAFPQARVTAVDYDPVLLRLAGDVLAEYGDRATVVD 99

Query: 102 DDALKVDF-EKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQKEV 158
            D ++ D+ E          + +   + +    L    +  AD  PP    L        
Sbjct: 100 TDLVRADWAEPLAGERIDAVVSSTALHWLSPSQLLRLYTALADLLPPGAVFLN------- 152

Query: 159 GERITAQKNSPHYGRLS 175
            + +     +     LS
Sbjct: 153 ADHLRYGPGNETLSALS 169


>gi|169828893|ref|YP_001699051.1| hypothetical protein Bsph_3429 [Lysinibacillus sphaericus C3-41]
 gi|168993381|gb|ACA40921.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 278

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            +K MGQ    D     +I +          +V+EIG G GN T  L      K+  ++ 
Sbjct: 45  ARKNMGQ---TDPY-AARIFQELQKSIDPQHSVLEIGPGWGNYTFPLADR-VDKLTCVDS 99

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA-NLPYNI 129
            +     L+     H   +  +     K +  +  +I     ++  N  Y +
Sbjct: 100 SESMLQYLQQCM-PHQKHVSYVHA---KWERLEKDDIEPHDIVLGVNCFYRM 147


>gi|167582502|ref|ZP_02375376.1| hypothetical protein BthaT_30450 [Burkholderia thailandensis TXDOH]
          Length = 378

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +V+  ++D++      +  ++  +  ++
Sbjct: 191 VARAPLPSTSLAFDIGVGTGVLAAVLASRGVERVVATDQDKRALACAAENVARLGYAQQV 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EII+ D         F       ++ N P+
Sbjct: 251 EIIEAD--------LFPDGRAPLVVCNPPW 272


>gi|311895025|dbj|BAJ27433.1| putative methyltransferase [Kitasatospora setae KM-6054]
          Length = 398

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 19/175 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDIS 90
             I+ ++ +     DG TV+EIG G G LT   +   LG+  V+ +E D +   + +   
Sbjct: 103 PAIVFRMLDMLDLHDGATVLEIGTGTG-LTAAYMSHRLGSENVVTVEVDPEVTELARGNL 161

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF--------NWISADT 142
           ++     E++  D  +        + +P   ++                      ++   
Sbjct: 162 ARAGFHPEVVCGDGTRGW-----GLRAPYDRVSVTCALRSVPAALIEQTGRGGKILTPWD 216

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
            P     L LL    V     A+     Y    +    RT   +  D+      P
Sbjct: 217 NPWICWGLLLLT---VTGGGNAEGRFSPYSAFMLARNQRTDLRIYRDVVRDEHLP 268


>gi|291301934|ref|YP_003513212.1| tRNA (adenine-N(1)-)-methyltransferase [Stackebrandtia nassauensis
           DSM 44728]
 gi|290571154|gb|ADD44119.1| tRNA (adenine-N(1)-)-methyltransferase [Stackebrandtia nassauensis
           DSM 44728]
          Length = 294

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH- 93
            +I        G  VIE GAG G LT  LL        V   E    F  I ++      
Sbjct: 91  AQIIAEGDIFPGARVIEAGAGSGALTCSLLRAVGETGHVYSYELRPDFAEIARNNVETFW 150

Query: 94  ---PNRLEIIQDDA 104
              P +  +   D 
Sbjct: 151 GGPPKQWTLTNGDF 164


>gi|94266679|ref|ZP_01290354.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93452667|gb|EAT03224.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 192

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQHP 94
           +++           V+E+G G G  TQ +L       +++ IE   +F  +L+       
Sbjct: 37  RRLVRYCEIEQAKLVVELGPGTGGTTQAILDAMQPEARLLSIEITPEFVEVLQR---HSD 93

Query: 95  NRLEIIQDDALKVD-FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
            RL +    A  V    +   + +P  +++ +P++         I  + W
Sbjct: 94  PRLLVHLGSAEHVRAILQEHGLGAPDVVVSGIPFSTMPPTTGRRIIGEVW 143


>gi|307731153|ref|YP_003908377.1| methyltransferase small [Burkholderia sp. CCGE1003]
 gi|307585688|gb|ADN59086.1| methyltransferase small [Burkholderia sp. CCGE1003]
          Length = 375

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK 111
           +G G G L  +L   G +K++  ++D +     ++  ++  +  +++++Q D        
Sbjct: 202 VGTGTGVLAALLAKRGVKKIVATDQDPRALACARENLARLGYGQQVDVVQAD-------- 253

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
            F       ++ N P+        + I    + P    + L F   + + ++       +
Sbjct: 254 LFPEGRAPLVVCNPPWVPARPA--SPIEHAVFDPD-SRMLLGFLNGLADHLS--PGGEGW 308

Query: 172 GRLS 175
             LS
Sbjct: 309 LILS 312


>gi|218131078|ref|ZP_03459882.1| hypothetical protein BACEGG_02682 [Bacteroides eggerthii DSM 20697]
 gi|317477035|ref|ZP_07936277.1| methyltransferase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986782|gb|EEC53115.1| hypothetical protein BACEGG_02682 [Bacteroides eggerthii DSM 20697]
 gi|316906828|gb|EFV28540.1| methyltransferase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 236

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +   +   ++++GAG G ++  L        +  IE D       K+     P  +R+E+
Sbjct: 33  APVQNAKYILDVGAGSGLISLQLAQRNPWASITSIEIDPAAAAQAKENIQSSPWSDRMEV 92

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           I  D      E  F++     I++N PY +
Sbjct: 93  ICSDFRDYHAENKFDL-----IVSNPPYFV 117


>gi|312621420|ref|YP_004023033.1| methyltransferase type 11 [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312201887|gb|ADQ45214.1| Methyltransferase type 11 [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 197

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 36  LKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDIS 90
           + KI           G  ++++G G G LT+ LL       KV  ++  ++   I K   
Sbjct: 22  IDKIEFLLGLLKIKKGSYILDVGCGTGVLTEHLLKRVGSEGKVFGVDFSEKMIDIAKSKF 81

Query: 91  SQHPNRLEIIQDDALKVDFEKFFN 114
           +  PN +E I +D   + F+ +F+
Sbjct: 82  NDFPN-VEFIVEDVNLLTFKNYFD 104


>gi|270296757|ref|ZP_06202956.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480115|ref|ZP_07939225.1| methyltransferase domain-containing protein [Bacteroides sp.
           4_1_36]
 gi|270272744|gb|EFA18607.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903662|gb|EFV25506.1| methyltransferase domain-containing protein [Bacteroides sp.
           4_1_36]
          Length = 235

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           + +     ++++G G G +   L       ++  IE D        +  S  P  +R+EI
Sbjct: 33  APADKAKRILDVGTGTGLIALQLAQRNPHARITAIEIDAAAAGQATENVSHSPWADRVEI 92

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           I  D      E  F++     I++N PY I
Sbjct: 93  ICHDFRDYQPENRFDL-----IVSNPPYFI 117


>gi|229543806|ref|ZP_04432865.1| ribosomal protein L11 methyltransferase [Bacillus coagulans 36D1]
 gi|229324945|gb|EEN90621.1| ribosomal protein L11 methyltransferase [Bacillus coagulans 36D1]
          Length = 312

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQD 102
              G +V+++G G G L+     LGA +V+ ++ D+       L    ++  NR+ + Q+
Sbjct: 173 VKPGDSVMDVGTGSGVLSIASAMLGAERVLALDLDEVAVRAATLNVKLNKVQNRVTVKQN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|218532488|ref|YP_002423304.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium chloromethanicum CM4]
 gi|254563565|ref|YP_003070660.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Methylobacterium extorquens DM4]
 gi|218524791|gb|ACK85376.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium chloromethanicum CM4]
 gi|254270843|emb|CAX26848.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Methylobacterium extorquens DM4]
          Length = 232

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++ ++  +     G  V+E+G G G +T +L+ LGA  V  +E+    +  L   +  
Sbjct: 80  PSVVAQMLGALDLAPGQRVLEVGTGTGYVTALLVRLGAAHVRSLER----YEGLARAARA 135

Query: 93  HPNR 96
           H  R
Sbjct: 136 HLGR 139


>gi|20093135|ref|NP_619210.1| menaquinone biosynthesis methyltransferase (2-heptaprenyl-1,
           4-naphthoquinone methyltransferase) [Methanosarcina
           acetivorans C2A]
 gi|19918474|gb|AAM07690.1| menaquinone biosynthesis methyltransferase (2-heptaprenyl-1,
           4-naphthoquinone methyltransferase) [Methanosarcina
           acetivorans C2A]
          Length = 179

 Score = 44.8 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHP 94
            K+ + SG  +G+ V+E+G G G  T  +      K  V  ++        LK+  S+  
Sbjct: 17  DKLIDRSGIKEGMHVLEVGCGSGAFTTFVARTVGIKGEVYALDIQPGMLMQLKEKLSRPE 76

Query: 95  NR----LEIIQDDA--LKVDFEKF 112
           NR    +++I+ DA  L  D   F
Sbjct: 77  NRDIRNIKLIKGDAHNLPFDDNSF 100


>gi|254439843|ref|ZP_05053337.1| Protein-L-isoaspartate O-methyltransferase superfamily
           [Octadecabacter antarcticus 307]
 gi|198255289|gb|EDY79603.1| Protein-L-isoaspartate O-methyltransferase superfamily
           [Octadecabacter antarcticus 307]
          Length = 217

 Score = 44.8 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL+   L K+ E+        V+++G G G  T +L  L A  V+ +E +       +  
Sbjct: 61  LLEARTLAKMLEAVDVQPNDVVLDLGCGLGYSTAVLAQL-ADFVVAVEDEPDRAQEAQQN 119

Query: 90  SSQH 93
            S H
Sbjct: 120 LSDH 123


>gi|52081209|ref|YP_080000.1| S-adenosylmethionine-dependent methyltransferase YrrT [Bacillus
           licheniformis ATCC 14580]
 gi|52786590|ref|YP_092419.1| YrrT [Bacillus licheniformis ATCC 14580]
 gi|319644823|ref|ZP_07999056.1| YrrT protein [Bacillus sp. BT1B_CT2]
 gi|81384955|sp|Q65GT8|Y2856_BACLD RecName: Full=Uncharacterized methyltransferase BLi02856/BL02021
 gi|52004420|gb|AAU24362.1| probable S-adenosylmethionine-dependent methyltransferase YrrT
           [Bacillus licheniformis ATCC 14580]
 gi|52349092|gb|AAU41726.1| YrrT [Bacillus licheniformis ATCC 14580]
 gi|317392632|gb|EFV73426.1| YrrT protein [Bacillus sp. BT1B_CT2]
          Length = 213

 Score = 44.8 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             I +   S  G  V+E G G GNLT  LL  G + V  +E  +    I +   ++ P  
Sbjct: 35  DGILDDVVSRSGHKVLEFGVGTGNLTAKLLAAG-KAVTGVEPSKAMREIAE---AKLPEN 90

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
             I+  D +      F    SP  I+++  ++
Sbjct: 91  AVIVDGDFIDFPDPPF----SPDTIVSSYAFH 118


>gi|253568320|ref|ZP_04845731.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842393|gb|EES70473.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 237

 Score = 44.8 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IG G G +  ML         ++ +E D+      K+  ++ P  +R+E
Sbjct: 33  ASVQGAYRILDIGTGTGLVALMLAQRSLPDANIVALEIDEAAAGQAKENVARSPWKDRIE 92

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +++ D L       F++     I++N PY + +
Sbjct: 93  VVKQDFLSYQSPDKFDV-----IVSNPPYFVDS 120


>gi|91782158|ref|YP_557364.1| protein-L-isoaspartate(D-aspartate)O- methyltransferase
           [Burkholderia xenovorans LB400]
 gi|296162020|ref|ZP_06844819.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. Ch1-1]
 gi|91686112|gb|ABE29312.1| Protein-L-isoaspartate(D-aspartate)O- methyltransferase
           [Burkholderia xenovorans LB400]
 gi|295887764|gb|EFG67583.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. Ch1-1]
          Length = 217

 Score = 44.8 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L    +  ++ +        +V+EIGAG G +   LL   A+ V+ ++ + +   +
Sbjct: 57  GQHMLA-PRVEARVLQELAVKKHESVLEIGAGSGYM-AALLAHRAQHVLTVDIEPELAEL 114

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            K     +     ++  +    D  + +  ++P  +I  
Sbjct: 115 AKTNLIANG----VLNAEVATGDASRGWPAAAPYDVICV 149


>gi|323307662|gb|EGA60927.1| Mtf1p [Saccharomyces cerevisiae FostersO]
          Length = 341

 Score = 44.8 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 103/339 (30%), Gaps = 82/339 (24%)

Query: 3   MNNKSHSLKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT------VIE 53
           M+     +K I      Y           +L +  +  KI +               V++
Sbjct: 1   MSVPIPGIKDISKLKFFYGFK--------YLWNPTVYNKIFDKLDLTKTYKHPEELKVLD 52

Query: 54  IGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV----- 107
           +  G G  + +       R+  ++EK    +  L       P  L+I++ D         
Sbjct: 53  LYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSP--LQILKRDPYDWSTYSN 110

Query: 108 --DFEKFF--------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTL 152
             D E+ F        +I+     +AN+       L+  W+S      +        + L
Sbjct: 111 LIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLL 170

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD---------------------IS 191
                   ++ A+       + SV+    T   ++                        S
Sbjct: 171 WMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQXIEEWDPILFS 230

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR---KTLRQSL------- 241
               +P+      ++   P        +++   +T+     +R    T+  SL       
Sbjct: 231 AAEIWPTXXKPIALVEMDPID--FDFDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQY 288

Query: 242 --KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              R+  ++LL +  I+       L+ ++F  +T +  +
Sbjct: 289 FNSRITDKDLLKKCPID-------LTNDEFIYLTKLFME 320


>gi|108760593|ref|YP_633081.1| methyltransferase [Myxococcus xanthus DK 1622]
 gi|108464473|gb|ABF89658.1| methyltransferase [Myxococcus xanthus DK 1622]
          Length = 385

 Score = 44.8 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDD- 103
            G  V +IG G G L+ +LL  GA  V   + D +     ++ + +     R ++ + D 
Sbjct: 204 KGKRVFDIGTGTGVLSFILLQRGAASVQATDCDSRAVACSQENAERLGLGKRFQVAEADL 263

Query: 104 -----ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                A  V     +    P   +    ++  ++ L  ++  
Sbjct: 264 FPKGTADLVVCNPPWIPEPPKNRVDRAVFDEDSQFLRRFLEG 305


>gi|319782008|ref|YP_004141484.1| methyltransferase type 11 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167896|gb|ADV11434.1| Methyltransferase type 11 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 287

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 10/128 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRL 97
                   G  V  IGAG G  T +L  L      V   E D++   + +     + N  
Sbjct: 94  IGKLEPKPGEAVCHIGAGTGYYTAVLARLVSPGGIVTAFELDEKLADLARQNLEAYGNA- 152

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNI-----GTRLLFNWISADTWPPFWESLTL 152
            ++  DA+         I     + A     +     G R++F W  A+  P     +  
Sbjct: 153 TVVHGDAVTTPLPPSDIIYVNAGVAAPPAGWLKALRPGGRMIFPWRPAERVP--LAVMVT 210

Query: 153 LFQKEVGE 160
             QK    
Sbjct: 211 RTQKGFAC 218


>gi|311106320|ref|YP_003979173.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310761009|gb|ADP16458.1| phospholipid N-methyltransferase PmtA [Achromobacter xylosoxidans
           A8]
          Length = 210

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 18/173 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDIS 90
             +   I        G  V+E+G G G  T+ +L  G    +++++E+D      L+   
Sbjct: 49  PALAAAITACIPPSAG-KVLELGCGTGVFTREMLRRGVDPARLVLVEQDSAMSSSLRTQF 107

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            +    L++   D  +    +   I +   I      N+        ++A       E  
Sbjct: 108 PEAA-VLQVAAQDLSRKSHPELDGIGA--AICGLPLRNMSQAHHHQLLAAVFDALPAEGS 164

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203
             LF   V  R            L        +A  +  +  +   P   V S
Sbjct: 165 MALFTYGV--RCPISTGVLEACGL--------RARKVGFVPLN--LPPASVYS 205


>gi|208355|gb|AAA72456.1| erythromycin resistance/lipoprotein recombinant protein precursor
          [synthetic construct]
          Length = 68

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           QNF+   + + KI  +    +   + EIG+G G L
Sbjct: 9  SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGVL 44


>gi|150018891|ref|YP_001311145.1| hypothetical protein Cbei_4079 [Clostridium beijerinckii NCIMB
           8052]
 gi|149905356|gb|ABR36189.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 185

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDI 89
              + +K+A          ++E G G G  T  L+        ++++E +++F   L++ 
Sbjct: 23  SKKLAEKMAHDIDFDHAKCIVEYGPGTGVFTDRLMKKIKDHTMLMLVEYNEEFCRELEEK 82

Query: 90  SSQHPNRLEIIQDDALKVD-FEKFFNISSPIRIIANLPY-----NIGTRLLFN 136
             ++ N + I+ D A  VD + K +NI     +++ LP+     N+   +L  
Sbjct: 83  YGEY-NNVVIVNDSAENVDKYLKEYNIKEVDYVVSGLPFASLPKNMSNSILKK 134


>gi|320528066|ref|ZP_08029232.1| methyltransferase domain protein [Solobacterium moorei F0204]
 gi|320131692|gb|EFW24256.1| methyltransferase domain protein [Solobacterium moorei F0204]
          Length = 253

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILK 87
           +   I++ IAE      G + +++G G G LT          +I    D+   ++    +
Sbjct: 69  MSRQIIEGIAEYVKVPAGGSCLDVGCGSGALTIACAKRNPDALIT-GIDRWGKEYASFSQ 127

Query: 88  DISSQHP-----NRLEIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           ++  ++           I  DA+ ++F  + F+  +   +  N+P      +L   + 
Sbjct: 128 ELCERNAMAEGVENTRFIHGDAVSLNFPDESFDAVTSNYVYHNIPSKNRQEILLETLR 185


>gi|237702709|ref|ZP_04533190.1| adenine-specific DNA methylase [Escherichia sp. 3_2_53FAA]
 gi|226903119|gb|EEH89378.1| adenine-specific DNA methylase [Escherichia sp. 3_2_53FAA]
          Length = 142

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +G  +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAGISNRDHILEPSAGTGAILRAIRDTAPVAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|126173086|ref|YP_001049235.1| methyltransferase small [Shewanella baltica OS155]
 gi|217974607|ref|YP_002359358.1| type 12 methyltransferase [Shewanella baltica OS223]
 gi|262828680|sp|B8E5T2|TRMN6_SHEB2 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|262828683|sp|A3D0V3|TRMN6_SHEB5 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|125996291|gb|ABN60366.1| methyltransferase small [Shewanella baltica OS155]
 gi|217499742|gb|ACK47935.1| methyltransferase type 12 [Shewanella baltica OS223]
          Length = 238

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +      TV++IGAG G L+ M        +  +E D       +      P  NRL ++
Sbjct: 30  AQLTAAKTVLDIGAGSGLLSLMAAQRCQAHITSVELDTSAAEACQHNFHNSPWANRLTLV 89

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
                +   ++         II N PY
Sbjct: 90  NSSIQEF-CQQIEYQEYFDHIICNPPY 115


>gi|187477318|ref|YP_785342.1| hypothetical protein BAV0813 [Bordetella avium 197N]
 gi|115421904|emb|CAJ48424.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 379

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           +  +A +   +    + +IG G G L  +L    A+ VI  + D +     +D  ++   
Sbjct: 190 IDLVARA--PMPEGPIFDIGTGTGVLAAVLARRCAQPVIGTDLDPRALACARDNLARLGL 247

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
             R+ + + D         F       I+ N P+        + I    + P    L   
Sbjct: 248 SARVSLQRAD--------LFPEGKAALIVCNPPWIPAKP--SSPIEYAVYDPNSRMLRAY 297

Query: 154 FQ 155
            Q
Sbjct: 298 LQ 299


>gi|158320112|ref|YP_001512619.1| methyltransferase type 12 [Alkaliphilus oremlandii OhILAs]
 gi|229892068|sp|A8MGS9|Y1076_ALKOO RecName: Full=Uncharacterized methyltransferase Clos_1076
 gi|158140311|gb|ABW18623.1| Methyltransferase type 12 [Alkaliphilus oremlandii OhILAs]
          Length = 216

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
              L+ I ++         +EIG G GNLT+ L   G  +VI IE  +Q     + I+  
Sbjct: 34  ETTLQSICDAIQDKKQGLTLEIGVGTGNLTKHLEQQG-FQVIGIEPSKQM----RRIAKD 88

Query: 93  HPNRLEIIQDDALKVDFEKFFN 114
               +EI+    L +   K F+
Sbjct: 89  KLPHIEIVDGHFLSIPVAKTFD 110


>gi|256823227|ref|YP_003147190.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase [Kangiella
           koreensis DSM 16069]
 gi|256796766|gb|ACV27422.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase [Kangiella
           koreensis DSM 16069]
          Length = 222

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-N 95
            ++ ++        V+EIG G G  T  L+   A KV  ++   +F    K+ + +   +
Sbjct: 72  ARMLQALRIQPSDIVLEIGTGTGYCT-ALMAQLAHKVYSVDIIGEFIEQAKERTQELGLD 130

Query: 96  RLEIIQDDA 104
            +E  + DA
Sbjct: 131 NIEFEEGDA 139


>gi|325915301|ref|ZP_08177621.1| protein-L-isoaspartate carboxylmethyltransferase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538494|gb|EGD10170.1| protein-L-isoaspartate carboxylmethyltransferase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 223

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ--QFFPILKDISSQHPN 95
           ++ ++     G  V+EIG G G  T  L  L AR+V+ +E D            ++   +
Sbjct: 75  RMLQALDLQPGEDVLEIGTGTGFSTACLAAL-AREVVSLEIDPALANAARANLNATGLGS 133

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
            + I   D      E+ F+       +  LP          W+  +        
Sbjct: 134 NVRIETADVFGWQSERRFDAICVTGAVDTLPTQ-----WLQWLRPNGRLFVVRG 182


>gi|288917673|ref|ZP_06412036.1| Methyltransferase type 11 [Frankia sp. EUN1f]
 gi|288350888|gb|EFC85102.1| Methyltransferase type 11 [Frankia sp. EUN1f]
          Length = 221

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G  DG  V+E+  GPG L   +  LG   V  ++  + F  I+ + ++    R+++   D
Sbjct: 35  GLADGAAVLELAPGPGFLAIEIARLGRYPVSALDISRTFVDIVAEQAAAADVRVDVRHGD 94

Query: 104 ALKVDFEK 111
           A ++ F  
Sbjct: 95  AAEMPFPA 102


>gi|227821914|ref|YP_002825884.1| putative protein-l-isoaspartate o-methyltransferase [Sinorhizobium
           fredii NGR234]
 gi|227340913|gb|ACP25131.1| putative protein-l-isoaspartate o-methyltransferase [Sinorhizobium
           fredii NGR234]
          Length = 219

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L++ + L K+ + +       V+EIG+G G     LL+L A  V+ +E D+       + 
Sbjct: 63  LMEPSPLAKLLQLARISKSDKVLEIGSGTGY-ASALLSLIAGSVVALESDESLIAAATET 121

Query: 90  SSQ 92
            ++
Sbjct: 122 LAR 124


>gi|221067372|ref|ZP_03543477.1| phospholipid N-methyltransferase-like protein [Comamonas
           testosteroni KF-1]
 gi|220712395|gb|EED67763.1| phospholipid N-methyltransferase-like protein [Comamonas
           testosteroni KF-1]
          Length = 185

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNR 96
           +A   G  D   V+E+GAG G +T+ LL  G    ++++IEK   F   L +   Q    
Sbjct: 35  MASLVGGGDEGLVVELGAGTGVITESLLRSGIAPGRLVIIEKSSSFASYLSERFPQ---- 90

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLP 126
           + +   DA   D+      ++   +++ LP
Sbjct: 91  ISVFHADA--GDWPSILGRAAVKAVVSGLP 118


>gi|323964330|gb|EGB59812.1| hypothetical protein ERJG_04276 [Escherichia coli M863]
          Length = 187

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    + K++   +   +   ++E  AG G + + +  +    +   +E +     
Sbjct: 29  SQLFVTPAPVCKRLVTLAEISNRDHILEPSAGTGAILRAIRDIAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQHGDFMEWQPAQYYS-----RIIMNPPFSHGQDI 128


>gi|187925511|ref|YP_001897153.1| methyltransferase small [Burkholderia phytofirmans PsJN]
 gi|187716705|gb|ACD17929.1| methyltransferase small [Burkholderia phytofirmans PsJN]
          Length = 374

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK 111
           IG G G L+ +L   G +K++  ++D +     ++  ++  +  +++++Q D        
Sbjct: 202 IGTGTGVLSALLAKRGVKKIVATDQDPRALACARENLTRLGYDQQVDVVQAD-------- 253

Query: 112 FFNISSPIRIIANLPY 127
            F       +++N P+
Sbjct: 254 LFPEGRAPLVVSNPPW 269


>gi|187922961|ref|YP_001894603.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia phytofirmans PsJN]
 gi|187714155|gb|ACD15379.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia phytofirmans PsJN]
          Length = 217

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L    +  ++ +        +V+EIGAG G +   LL   A+ V+ ++ + +   +
Sbjct: 57  GQHMLA-PRVEARVLQELAVKKHESVLEIGAGSGYM-AALLAHRAQHVLTVDIEPELAEL 114

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            K     +     ++  +    D  + +  ++P  +I  
Sbjct: 115 AKSNLIANG----VLNAEVATGDASRGWAGAAPYDVICV 149


>gi|322371123|ref|ZP_08045675.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
 gi|320549113|gb|EFW90775.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
          Length = 235

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP--ILK 87
           L+D    + + ++ G ++G  V+EI  G G  T ML   GA  ++ ++           K
Sbjct: 27  LIDRREKQAVLDAIGPVEGKRVLEIACGTGRFTVMLAERGAD-IVGLDISAAMLQQGRHK 85

Query: 88  DISSQHPNRLEIIQDDALKVDFEK 111
             ++   + LE ++ DA ++ F  
Sbjct: 86  ARNAGVADHLEFMRGDAARLPFPD 109


>gi|284031146|ref|YP_003381077.1| tRNA (adenine-N(1)-)-methyltransferase [Kribbella flavida DSM
           17836]
 gi|283810439|gb|ADB32278.1| tRNA (adenine-N(1)-)-methyltransferase [Kribbella flavida DSM
           17836]
          Length = 313

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQH 93
             +I   +    G  V+E GAG G LT  LL       +VI  E+ + F  + +   +  
Sbjct: 101 TAQIVTMADIFPGAKVVEAGAGSGALTTALLRAVGIHGQVISFERREDFAEVARKNVTGF 160


>gi|269467806|gb|EEZ79561.1| N6-adenine-specific methylase [uncultured SUP05 cluster bacterium]
          Length = 190

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 13/134 (9%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFNI 115
           G G L+   L+ GA++V+ +EKD + F  L K+      +++ +   DALK   +K    
Sbjct: 57  GSGALSFEALSRGAKQVVSVEKDLKAFQSLEKNRKLLKSDKIHLFNQDALKFLDQKSDQT 116

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPP----FWESLTLLFQKEVGERITAQ------ 165
              I +      NI  + L      +   P    + ES   + + EV E  + +      
Sbjct: 117 FDFIFLDPPFHQNILPKALKALSKGNFVAPNSKIYIESEVEMLESEVAEFFSQKIKISKQ 176

Query: 166 --KNSPHYGRLSVL 177
                 HY  + +L
Sbjct: 177 KHSGQVHYCLIEIL 190


>gi|271967174|ref|YP_003341370.1| tRNA (adenine-N(1)-)-methyltransferase [Streptosporangium roseum
           DSM 43021]
 gi|270510349|gb|ACZ88627.1| tRNA (adenine-N(1)-)-methyltransferase [Streptosporangium roseum
           DSM 43021]
          Length = 289

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHP 94
            +I   +    G  V+E G G G LT  LL     +  V   E+ + F  +      +  
Sbjct: 91  AQIVAMADIFPGARVVEAGVGSGALTCFLLRAVGNEGTVTSYERREDFAEVATKNVEKFY 150

Query: 95  N----RLEIIQDDALKVDFEKFFN 114
                +  ++  D ++   E   +
Sbjct: 151 GGPMDQWRLVVGDFVEALDESDVD 174


>gi|227824453|ref|ZP_03989285.1| methyltransferase [Acidaminococcus sp. D21]
 gi|226904952|gb|EEH90870.1| methyltransferase [Acidaminococcus sp. D21]
          Length = 242

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ--DDA 104
               V+E+G G G ++ +    GA+ V+ ++K+     +LK    ++    +++    D 
Sbjct: 41  KKACVLELGCGTGAISLLAANRGAQSVLAVDKNPHVIELLKRSVRENGLEQQVMPFVGDI 100

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTR 132
           L     ++    +   +  N PY IG R
Sbjct: 101 LAY--REYLKPDTMDLVYMNPPYRIGGR 126


>gi|225175857|ref|ZP_03729850.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168781|gb|EEG77582.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Dethiobacter alkaliphilus AHT 1]
          Length = 283

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH 93
           +++ +AE   +     ++EIGAG G +   L  L  + +V+ ++  Q    I +  +++H
Sbjct: 102 LVEAVAEELQAHTSPRILEIGAGSGAVAVSLAKLLPKARVVAVDVSQAALEIAQKNAARH 161

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
               R+E +  D      +++F+      +++N PY     +L        + P  
Sbjct: 162 GVAGRVEFLAGDLYAPVADEYFD-----AVVSNPPYISAADILKLQCDVKDFEPRL 212


>gi|154685041|ref|YP_001420202.1| hypothetical protein RBAM_005790 [Bacillus amyloliquefaciens FZB42]
 gi|154350892|gb|ABS72971.1| conserved hypothetical protein [Bacillus amyloliquefaciens FZB42]
          Length = 202

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ 92
           + +K+           ++E G G G  T+ LL        +++IE++++F+ +L++   +
Sbjct: 27  LAEKMMGKIDFHKAEYIVEYGPGTGVFTKKLLEKRQPGTMILLIEQNEEFYALLQEKYKE 86

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N L I+   A  ++   ++     +   +      ++  ++  + +            
Sbjct: 87  EQN-LFIVHGSAEHIESHMKEHGIPYADYVVSGLPFASLPKKVSADILKDTANILRNHGE 145

Query: 151 TLLFQ 155
            + FQ
Sbjct: 146 FITFQ 150


>gi|126307676|ref|XP_001367562.1| PREDICTED: similar to chromosome 1 open reading frame 66,
           [Monodelphis domestica]
          Length = 481

 Score = 44.4 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 94/296 (31%), Gaps = 56/296 (18%)

Query: 5   NKSHSLKTILSHYKIIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           ++S  L      + + PKK      +G        ++KK    S       V+++G+G G
Sbjct: 117 SQSSQLAAQFRKH-VKPKKQHEIRRLG-------ELVKK---LSDLTSCNQVVDVGSGQG 165

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF--EKFFNISS 117
           +LT+ L       V  IEKD++     + +  +    L I++ +  +         +   
Sbjct: 166 HLTRFLALGLGLSVTGIEKDRKLVERAQHLDQEL---LSILKKEKRRKPQIISAVPHRPP 222

Query: 118 PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
              +    P N+   LL    S  +  P               R          G LSV 
Sbjct: 223 KHIVSWVDPTNLSEGLLSPLESEASQDPAASGP----------RRVLLTGLHACGDLSVT 272

Query: 178 ----TGWRTKATMMFDISPHVF---FPSPKVTS-TVIHFIPHLNPIPC------CLESLK 223
                 +  +   +  +         P     S  V     H  P          LE   
Sbjct: 273 ILQHFAYCPEVVALASVGCCYMKLTTPGGYPLSHWVSGLRDHRLPYKFREGACHALEEYA 332

Query: 224 KITQEAFGKRRKTLRQSLKRLGGENLLHQA-------GIETNLRAENLSIEDFCRI 272
              + A      TLR    R   E ++  A       G+++  RA  L +E++ R+
Sbjct: 333 GRLRAA----GPTLRTHCYRAALETVIRSAQPGLCRPGVQSIPRAHELPLEEYVRL 384


>gi|149179371|ref|ZP_01857929.1| hypothetical protein PM8797T_10439 [Planctomyces maris DSM 8797]
 gi|148841807|gb|EDL56212.1| hypothetical protein PM8797T_10439 [Planctomyces maris DSM 8797]
          Length = 245

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 39/75 (52%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E +G   G++V+++  G G  T+ML   GA  V+ I+  Q    + +   +Q+   +E I
Sbjct: 31  ELAGDPQGLSVLDVACGEGFYTRMLRERGATHVMGIDLSQGMIELAQRQEAQNQQGIEFI 90

Query: 101 QDDALKVDFEKFFNI 115
             DA ++   + F++
Sbjct: 91  VGDARELPVSEQFDL 105


>gi|257055998|ref|YP_003133830.1| phospholipid N-methyltransferase [Saccharomonospora viridis DSM
           43017]
 gi|256585870|gb|ACU97003.1| phospholipid N-methyltransferase [Saccharomonospora viridis DSM
           43017]
          Length = 196

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             TV+E+GAG G +T  +      +   + +E D      L+     HP  + +I  DA
Sbjct: 38  TPTVVELGAGTGAVTTQVAQRLPARGQHLAVEIDPVLAAHLRHT---HPG-VTVIDGDA 92


>gi|241662223|ref|YP_002980583.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           pickettii 12D]
 gi|240864250|gb|ACS61911.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           pickettii 12D]
          Length = 236

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  ++ +         V+E+GAG G +  +L   G R+V  ++   +    
Sbjct: 77  GQNMLA-PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RQVTTLDIVPELVAF 134

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +D  S++    +++++    +   E  +++   I +  ++P
Sbjct: 135 ARDNLSRNGVTNVDVVEASGAQGWGEGLYDV---ICVSGSVP 173


>gi|160888233|ref|ZP_02069236.1| hypothetical protein BACUNI_00642 [Bacteroides uniformis ATCC 8492]
 gi|156862179|gb|EDO55610.1| hypothetical protein BACUNI_00642 [Bacteroides uniformis ATCC 8492]
          Length = 235

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           + +     ++++G G G +   L       ++  IE D        +  S  P  +R+E+
Sbjct: 33  APADKAKRILDVGTGTGLIALQLAQRNPHARITAIEIDAAAAGQATENVSHSPWADRVEV 92

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           I  D      E  F++     I++N PY I
Sbjct: 93  ICHDFRDYQPENRFDL-----IVSNPPYFI 117


>gi|70987046|gb|AAZ16518.1| adenine methylase [Staphylococcus epidermidis]
          Length = 45

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
          QNF+     +K+I   +       VIEIG+G G+ T
Sbjct: 10 QNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFT 45


>gi|116626198|ref|YP_828354.1| glycosyl transferase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229360|gb|ABJ88069.1| glycosyl transferase, family 2 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 488

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           G  V+E+GAG GNLT  L++     V   EKD      L++   + PN +
Sbjct: 267 GDEVLEVGAGIGNLTGRLMSRRVMYVAA-EKDPLHLHALRNRFLRTPNVV 315


>gi|107024153|ref|YP_622480.1| methyltransferase small [Burkholderia cenocepacia AU 1054]
 gi|116688520|ref|YP_834143.1| methyltransferase small [Burkholderia cenocepacia HI2424]
 gi|105894342|gb|ABF77507.1| methyltransferase small [Burkholderia cenocepacia AU 1054]
 gi|116646609|gb|ABK07250.1| methyltransferase small [Burkholderia cenocepacia HI2424]
          Length = 397

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +++  + D +     ++  ++  H  ++
Sbjct: 210 VARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDHDSRALACARENVARLGHAGQV 269

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       ++ N P+
Sbjct: 270 EIVEAD--------LFPAGRAPLVVCNPPW 291


>gi|330994251|ref|ZP_08318179.1| Protein-L-isoaspartate O-methyltransferase [Gluconacetobacter sp.
           SXCC-1]
 gi|329758718|gb|EGG75234.1| Protein-L-isoaspartate O-methyltransferase [Gluconacetobacter sp.
           SXCC-1]
          Length = 271

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILK 87
           +L +  +  ++ + +    G  V+ +GAG G +  +L  +G    V  +E D +     +
Sbjct: 112 YLTEPRVTGRMLQVADIHPGARVLVVGAGTGYVAALLAGMGQGLVVTALESDARLAAAGR 171

Query: 88  DISSQHPNRLEIIQDDALKVDFEK 111
           D+  Q    +   +   +K D   
Sbjct: 172 DLCRQWAPDVHWHEGALVKGDAAD 195


>gi|294506164|ref|YP_003570222.1| RNA methylase family UPF0020 [Salinibacter ruber M8]
 gi|294342492|emb|CBH23270.1| Putative RNA methylase family UPF0020 [Salinibacter ruber M8]
          Length = 247

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
               ++ ++ E++       VI++G+G G +          + I +E D +     ++ +
Sbjct: 84  TSQRVVNRMLEAAQVTSDDVVIDLGSGDGRIPIAAAQRHGARGIGVEIDPELIAKARENA 143

Query: 91  SQH--PNRLEIIQDDALKVDFEK 111
                 + +E  Q D  + D  +
Sbjct: 144 EAAGVSDLVEFRQGDLFEADLSE 166


>gi|291302073|ref|YP_003513351.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
 gi|290571293|gb|ADD44258.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
          Length = 253

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH 93
           I+    E+        +I++G GPG+L+  LL    +  V+ ++ D      L + +   
Sbjct: 34  IIDA-VEAGVDRPDPVIIDLGCGPGSLSVRLLDRLPKATVVAVDADPVLLA-LGEAAYGD 91

Query: 94  PNRLEIIQDDALKVDFEKFFNISSP 118
              L  ++ D +++ +     +  P
Sbjct: 92  RAGLRFVKADLVELGWTTALGLERP 116


>gi|170695785|ref|ZP_02886927.1| methyltransferase small [Burkholderia graminis C4D1M]
 gi|170139390|gb|EDT07576.1| methyltransferase small [Burkholderia graminis C4D1M]
          Length = 375

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK 111
           +G G G L  +L   G +K++  ++D +     ++  ++  +  +++++Q D        
Sbjct: 202 VGTGTGVLAALLAKRGVKKIVATDQDPRALACARENLARLGYEQQVDVVQAD-------- 253

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
            F       ++ N P+        + I    + P    + L F K + E ++       +
Sbjct: 254 LFPEGRAPLVVCNPPWVPARPA--SPIEYAVYDPD-SRMLLGFLKGLSEHLS--PGGEGW 308

Query: 172 GRLS 175
             LS
Sbjct: 309 LILS 312


>gi|309783373|ref|ZP_07678083.1| methyltransferase domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308917917|gb|EFP63604.1| methyltransferase domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 658

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++  ++ E +    G+ V+E  AG G + + L      +V+ +E +      L       
Sbjct: 504 DLAARMVELADIEPGMRVLEPSAGTGRILEQLPEGC--EVVAVEINAALGGRL------D 555

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +R  ++  D L+   E  +      RI+ N P+     +
Sbjct: 556 ADRRAVVIGDFLQCTPETLWGSFD--RILMNPPFANADDI 593


>gi|291542172|emb|CBL15282.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ruminococcus bromii L2-63]
          Length = 280

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++    +   +      +++ +G G +   L  +   +V  +E D+  F  L+    ++ 
Sbjct: 100 VVNLCIDFLENRTDKKTVDLCSGSGAIAVALDKISGAEVTAVEIDETAFSYLETNVKENN 159

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           + ++ +  DAL++   + F       I++N PY     +
Sbjct: 160 SSVKPVMADALEI--CETFADGEFDLIVSNPPYIKSADI 196


>gi|302864898|ref|YP_003833535.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Micromonospora aurantiaca ATCC 27029]
 gi|315501183|ref|YP_004080070.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Micromonospora sp. L5]
 gi|302567757|gb|ADL43959.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Micromonospora aurantiaca ATCC 27029]
 gi|315407802|gb|ADU05919.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Micromonospora sp. L5]
          Length = 236

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ    D +  +    + G   G  V+++GAG G  T+ L   GA     +  D    
Sbjct: 38  SFGQ----DRSWRRATRAALGLRPGERVLDVGAGTGVSTEELAHSGA---YAVGADLSL- 89

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEK 111
            +L       P+ + ++  DAL++ F  
Sbjct: 90  GMLHAGKRTRPS-VPLLAGDALRLPFAD 116


>gi|111023674|ref|YP_706646.1| hypothetical protein RHA1_ro06716 [Rhodococcus jostii RHA1]
 gi|110823204|gb|ABG98488.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 334

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            ++  +SG   G +++EIG G G  T  L   G   +  +E   +   I +   +  PN 
Sbjct: 32  DELVLTSGLRPGDSLLEIGGGSGKATVELARRG-FTITSVELGHELAAIARANVAPFPNA 90

Query: 97  LEIIQDDA 104
            E++  D 
Sbjct: 91  -EVVCADF 97


>gi|294631565|ref|ZP_06710125.1| protein-L-isoaspartate O-methyltransferase 2 [Streptomyces sp. e14]
 gi|292834898|gb|EFF93247.1| protein-L-isoaspartate O-methyltransferase 2 [Streptomyces sp. e14]
          Length = 389

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +++ ++  +     G  V+EIG G G    L    L LG   V  +E D       +  
Sbjct: 99  PSVVLRMLAALDVRAGHRVLEIGTGTGWNAALLA--LRLGVDNVTSVEIDPDVADAARGR 156

Query: 90  SSQHPNRLEIIQDD 103
            +       ++  D
Sbjct: 157 LAAGELLCTVLTRD 170


>gi|288958652|ref|YP_003448993.1| hypothetical protein AZL_018110 [Azospirillum sp. B510]
 gi|288910960|dbj|BAI72449.1| hypothetical protein AZL_018110 [Azospirillum sp. B510]
          Length = 198

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
               V+E G G G +T  +L  G  A ++   E D      L+         + +I DD 
Sbjct: 51  PDEAVVEFGGGTGPITAAILESGVPADRLYSFEIDGNLASHLRARCPA----VTVIADDC 106

Query: 105 LK 106
            K
Sbjct: 107 RK 108


>gi|190408454|gb|EDV11719.1| mitochondrial RNA polymerase specificity factor [Saccharomyces
           cerevisiae RM11-1a]
          Length = 341

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 104/339 (30%), Gaps = 82/339 (24%)

Query: 3   MNNKSHSLKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT------VIE 53
           M+     +K I      Y           +L +  +  KI +               V++
Sbjct: 1   MSVPIPGIKDISKLKFFYGFK--------YLWNPTVYNKIFDKLDLTKTYKHPEELKVLD 52

Query: 54  IGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------ 106
           +  G G  + +       R+  ++EK    +  L       P  L+I++ D         
Sbjct: 53  LYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSP--LQILKRDPYDWSTYSN 110

Query: 107 -VDFEKFF--------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTL 152
            +D E+ F        +I+     +AN+       L+  W+S      +        + L
Sbjct: 111 LIDEERIFVPEAQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLL 170

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD---------------------IS 191
                   ++ A+       + SV+    T   ++                        S
Sbjct: 171 WMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFS 230

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR---KTLRQSL------- 241
               +P+      ++   P        +++   +T+     +R    T+  SL       
Sbjct: 231 AAEIWPTKGKPIALVEMDPID--FDFDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQY 288

Query: 242 --KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              R+  ++LL +  I+       L+ ++F  +T +  +
Sbjct: 289 FNSRITDKDLLKKCPID-------LTNDEFIYLTKLFME 320


>gi|323181098|gb|EFZ66633.1| hypothetical protein ECOK1180_0138 [Escherichia coli 1180]
          Length = 137

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 18  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVR 77

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
            L++      N + +   D ++    ++++     RII N P+ I  + + + + A
Sbjct: 78  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPF-IHGQDIRHILRA 123


>gi|331647360|ref|ZP_08348453.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331043766|gb|EGI15903.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 157

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQH 93
           +  ++   +   +   ++E  AG G + + +       +   +E +      L++     
Sbjct: 8   VCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVRYLRENF--- 64

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 65  -NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 98


>gi|307324542|ref|ZP_07603749.1| methyltransferase small [Streptomyces violaceusniger Tu 4113]
 gi|306889786|gb|EFN20765.1| methyltransferase small [Streptomyces violaceusniger Tu 4113]
          Length = 343

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L   G R+V+  ++D +     ++ +++    +R+
Sbjct: 157 VAEAPLPTQELAFDIGTGTGVLAAVLARRGIRRVVATDQDARALGCARENAARLGLSDRI 216

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+++ D         +       ++ N P+
Sbjct: 217 EVVEAD--------LYPPGRAPLVVCNPPW 238


>gi|311031573|ref|ZP_07709663.1| dimethyladenosine transferase [Bacillus sp. m3-13]
          Length = 213

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             I +   S     V+E G G GNLT  LL  G +KV  IE  +         + + P  
Sbjct: 35  DDILKDVASKALSPVVEFGVGTGNLTAELLKQG-KKVYAIEPSKTMRE---KAAEKLPQT 90

Query: 97  LEIIQDDALKVDFEK 111
           + I   D L      
Sbjct: 91  VSIEDGDFLSFPEPA 105


>gi|307565863|ref|ZP_07628323.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307345401|gb|EFN90778.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 477

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G T++E  AG GN+   L   GA +VI  EKD+    +L D         +II DD L V
Sbjct: 29  GKTILEPSAGKGNIVDWLKANGAGRVIACEKDENLKKLLTDKC-------DIIADDFLSV 81

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             E+  ++     I+ N P++ G + + +            +L
Sbjct: 82  SSEQISHVD---YIVMNPPFSEGAKHILHAFEIAPAGCTIIAL 121


>gi|289641465|ref|ZP_06473628.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           symbiont of Datisca glomerata]
 gi|289508675|gb|EFD29611.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           symbiont of Datisca glomerata]
          Length = 350

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH 93
           ++ ++       +G+ V+EIG G G    +L       +V  IE D       +    ++
Sbjct: 69  LVDRMLTLLNVREGMDVLEIGTGTGYNAALLAERTRTGRVTTIEIDPTIAGHARQALRRN 128

Query: 94  PNRLEIIQDD-ALKVDFEKFFNISSPIRIIANLPY 127
              + +I  D  L       ++        A +PY
Sbjct: 129 NYPVTVIIGDGILGYPERAPYDRIIATAAAATIPY 163


>gi|237713238|ref|ZP_04543719.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406622|ref|ZP_06083171.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646172|ref|ZP_06723828.1| methyltransferase domain protein [Bacteroides ovatus SD CC 2a]
 gi|294807858|ref|ZP_06766640.1| methyltransferase domain protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446705|gb|EEO52496.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355325|gb|EEZ04416.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638501|gb|EFF56863.1| methyltransferase domain protein [Bacteroides ovatus SD CC 2a]
 gi|294444920|gb|EFG13605.1| methyltransferase domain protein [Bacteroides xylanisolvens SD CC
           1b]
          Length = 236

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IG G G +  ML        K++ +E D+      ++  ++ P   R+E
Sbjct: 33  ASVERARRILDIGTGTGLVALMLAQRSLPDAKIVALEIDEAAAEQARENVARSPWQERIE 92

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           ++Q D  K      F++     I++N PY + +
Sbjct: 93  VVQADFKKYRSSDKFDV-----IVSNPPYFVDS 120


>gi|150402049|ref|YP_001329343.1| SAM-binding motif-containing protein [Methanococcus maripaludis C7]
 gi|150033079|gb|ABR65192.1| SAM (and some other nucleotide) binding motif [Methanococcus
           maripaludis C7]
          Length = 286

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102
                 +++EIG GPG  T  L     +++ V+E+      ILK+   +   + + II  
Sbjct: 59  NIDKNTSILEIGPGPGTYTIPLAKE-VKEITVVEQSTGMIDILKNRMKEECIDNINIINK 117

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
              + D  +     +P  + ++  Y++G   +   +             L F
Sbjct: 118 ---RWDNFELNREFNPDIVFSS--YSLGVDDMEESLKKMNNYAEKYCCILTF 164


>gi|6323884|ref|NP_013955.1| Mtf1p [Saccharomyces cerevisiae S288c]
 gi|1709156|sp|P14908|MTF1_YEAST RecName: Full=Mitochondrial transcription factor 1; AltName:
           Full=Mitochondrial transcription factor mtTFB; AltName:
           Full=Mitochondrial-specificity factor; AltName:
           Full=RF1023
 gi|887609|emb|CAA90199.1| Mtf1p [Saccharomyces cerevisiae]
 gi|207342135|gb|EDZ69993.1| YMR228Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256271601|gb|EEU06643.1| Mtf1p [Saccharomyces cerevisiae JAY291]
 gi|259148813|emb|CAY82058.1| Mtf1p [Saccharomyces cerevisiae EC1118]
 gi|285814232|tpg|DAA10127.1| TPA: Mtf1p [Saccharomyces cerevisiae S288c]
 gi|323303446|gb|EGA57241.1| Mtf1p [Saccharomyces cerevisiae FostersB]
 gi|323332146|gb|EGA73557.1| Mtf1p [Saccharomyces cerevisiae AWRI796]
 gi|323347042|gb|EGA81318.1| Mtf1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323353169|gb|EGA85469.1| Mtf1p [Saccharomyces cerevisiae VL3]
          Length = 341

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 104/339 (30%), Gaps = 82/339 (24%)

Query: 3   MNNKSHSLKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT------VIE 53
           M+     +K I      Y           +L +  +  KI +               V++
Sbjct: 1   MSVPIPGIKDISKLKFFYGFK--------YLWNPTVYNKIFDKLDLTKTYKHPEELKVLD 52

Query: 54  IGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------ 106
           +  G G  + +       R+  ++EK    +  L       P  L+I++ D         
Sbjct: 53  LYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSP--LQILKRDPYDWSTYSN 110

Query: 107 -VDFEKFF--------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTL 152
            +D E+ F        +I+     +AN+       L+  W+S      +        + L
Sbjct: 111 LIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLL 170

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD---------------------IS 191
                   ++ A+       + SV+    T   ++                        S
Sbjct: 171 WMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFS 230

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR---KTLRQSL------- 241
               +P+      ++   P        +++   +T+     +R    T+  SL       
Sbjct: 231 AAEIWPTKGKPIALVEMDPID--FDFDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQY 288

Query: 242 --KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              R+  ++LL +  I+       L+ ++F  +T +  +
Sbjct: 289 FNSRITDKDLLKKCPID-------LTNDEFIYLTKLFME 320


>gi|218677831|ref|ZP_03525728.1| phosphatidylethanolamine
          N-methyltransferase/phosphatidyl-N-methylethanolaminen-
          [Rhizobium etli CIAT 894]
          Length = 104

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEK 78
            K++A       G+ V+E+G G G +T+ +L  G R   ++ IE 
Sbjct: 36 TAKRMASVIDINSGLPVLELGPGTGAITKAILGRGVRPDNLVAIEI 81


>gi|167587650|ref|ZP_02380038.1| Methyltransferase [Burkholderia ubonensis Bu]
          Length = 294

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRL 97
              +         +IG G G L  +L   G ++V+  ++D +     ++   +     ++
Sbjct: 190 VARAPLPADTLAFDIGTGTGVLAAVLAARGVKRVVATDQDSRALACARENVERLGCAAQV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++++ D         F       ++ N P+
Sbjct: 250 DVVEAD--------LFPAGRAPLVVCNPPW 271


>gi|224826792|ref|ZP_03699892.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Lutiella
           nitroferrum 2002]
 gi|224601012|gb|EEG07195.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Lutiella
           nitroferrum 2002]
          Length = 219

 Score = 44.4 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISS 91
             +  ++ +  G      V+EIG G G++T  LL   +R V  ++ D        K++  
Sbjct: 63  PKVEARLVQDLGLKPEDKVLEIGTGSGHVT-ALLASLSRHVYSVDLDPVMKEMAAKNLKK 121

Query: 92  QHPNRLEIIQDD 103
              +   +++ +
Sbjct: 122 AGISNATLVEGN 133


>gi|254172088|ref|ZP_04878764.1| tRNA (1-methyladenosine) methyltransferase [Thermococcus sp. AM4]
 gi|214033984|gb|EEB74810.1| tRNA (1-methyladenosine) methyltransferase [Thermococcus sp. AM4]
          Length = 254

 Score = 44.4 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88
            D  I   I   +G   G TVIE GAG G LT  L        KVI  E  + F+ I K 
Sbjct: 81  KDAGI---IIAYTGISPGDTVIEAGAGSGALTIFLANAVGPEGKVISYEVRKDFYEIAKR 137

Query: 89  --ISSQHPNRLEIIQDDA 104
               +   +R+ +   + 
Sbjct: 138 NIELAGFSDRVILKNKNI 155


>gi|331266183|ref|YP_004325813.1| 16S RNA G1207 methylase RsmC [Streptococcus oralis Uo5]
 gi|326682855|emb|CBZ00472.1| 16S RNA G1207 methylase RsmC [Streptococcus oralis Uo5]
          Length = 196

 Score = 44.4 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +G+N  FL D  +  KK+ +             +G TV+++G G G L   L      + 
Sbjct: 24  LGENMTFLTDAGVFSKKMVDFGSQLLLKCLEVNEGETVLDVGCGYGPLGLSLAKAYGAQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++     I Q +  +    KF        +I+N P   G ++
Sbjct: 84  TMVDINNRALDLARQNAERNKVEATIFQSNIYEQVEGKF------DHVISNPPIRAGKQV 137

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 138 VHEIIEKSRDFLKDRGDLTIVIQK 161


>gi|269123368|ref|YP_003305945.1| methyltransferase small [Streptobacillus moniliformis DSM 12112]
 gi|268314694|gb|ACZ01068.1| methyltransferase small [Streptobacillus moniliformis DSM 12112]
          Length = 237

 Score = 44.4 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 27  QNFLLDLNILKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           Q+F LD  +   IA+          ++EIG+G G ++ +L      ++  +E +   + I
Sbjct: 20  QSFTLDSLL---IADYVNINRKSKKLLEIGSGFGIISMILRKRTLAEITGVEINYDAYNI 76

Query: 86  -LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            L+++ + + + +  I +D L  ++ KF +  +   I++N PY
Sbjct: 77  SLENLKNNNIDNIFFINEDIL--NYRKFLSEQTYDIIVSNPPY 117


>gi|222480655|ref|YP_002566892.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
 gi|222453557|gb|ACM57822.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
          Length = 197

 Score = 44.4 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
              G + G  V+EIG+G G        +     V  ++ D+     L  ++++   + + 
Sbjct: 27  RQLGLVPGDRVVEIGSGNGYFALPAARIADPATVYAVDVDRSLLAELDALATEQGIDNIT 86

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            I+ DA  +   +         ++AN  + I
Sbjct: 87  AIKGDARAL--SELLPEPVDFALLANAFHGI 115


>gi|309780804|ref|ZP_07675545.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           sp. 5_7_47FAA]
 gi|308920486|gb|EFP66142.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           sp. 5_7_47FAA]
          Length = 216

 Score = 44.4 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  ++ +         V+E+GAG G +  +L   G R+V  ++   +    
Sbjct: 57  GQNMLA-PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RQVTTLDIVPELVAF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +D  S++    +++++    +   E  +++   I +  ++P
Sbjct: 115 ARDNLSRNGVTNVDVVEASGAQGWGEGLYDV---ICVSGSVP 153


>gi|46446490|ref|YP_007855.1| L-isoaspartyl protein carboxyl methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|55583893|sp|Q6MCW9|PIMT_PARUW RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|46400131|emb|CAF23580.1| probable L-isoaspartyl protein carboxyl methyltransferase
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 210

 Score = 44.4 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  +A+ +       V+EIG G G  +  +L+  A  V  +E+  +   + K    +
Sbjct: 54  PFIVAVMAQQAQITPQDKVLEIGTGSGY-SAAILSQLASHVYSMERYPKLAELAKKRLQE 112

Query: 93  H-PNRLEIIQDD 103
              N + +   D
Sbjct: 113 FGYNNVTVSVGD 124


>gi|28210455|ref|NP_781399.1| precorrin-6B methylase/decarboxylase cbiT/cbiE [Clostridium tetani
           E88]
 gi|28202892|gb|AAO35336.1| precorrin-6B methylase/decarboxylase cbiT/cbiE [Clostridium tetani
           E88]
          Length = 404

 Score = 44.4 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 14/92 (15%)

Query: 28  NFLLDLNILK----------KIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVI 74
           +F+ D   ++          ++  +      +   V++IGAG G+++     L    KVI
Sbjct: 217 HFIKDNEFIRGDCPMTKEEVRMLTAIKMDIKEEDKVLDIGAGTGSVSIQACKLCPLGKVI 276

Query: 75  VIEKDQQFFPILKDISSQH-PNRLEIIQDDAL 105
            IEK+++   ++++   +   N LEI++ +AL
Sbjct: 277 AIEKEEEALRVIRENKKKFNANNLEIVEGEAL 308


>gi|319940273|ref|ZP_08014625.1| adenine-specific DNA methylase [Streptococcus anginosus 1_2_62CV]
 gi|319810575|gb|EFW06911.1| adenine-specific DNA methylase [Streptococcus anginosus 1_2_62CV]
          Length = 317

 Score = 44.4 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 11/80 (13%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPIL 86
           FL+D            + + I V+EIG+G GNL + +L    + V  + +E D     I 
Sbjct: 100 FLIDQ---------LSNKEHIDVLEIGSGMGNLAETILNNTNKNVDYLGLELDDLLIDIS 150

Query: 87  KDISSQHPNRLEIIQDDALK 106
             I+     ++  +Q DA++
Sbjct: 151 ASIADVMDAKVSFVQGDAVR 170


>gi|291279853|ref|YP_003496688.1| cyclopropane-fatty-acyl-phospholipid synthase [Deferribacter
           desulfuricans SSM1]
 gi|290754555|dbj|BAI80932.1| cyclopropane-fatty-acyl-phospholipid synthase [Deferribacter
           desulfuricans SSM1]
          Length = 371

 Score = 44.4 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I        G  V++IG G G L + ++      V+ I   ++     K      P  +E
Sbjct: 147 ICRKLELKKGDKVLDIGCGWGGLAKYMVEKYGCNVVGINISEKQIEYAKKFCKGLP--VE 204

Query: 99  IIQDD 103
           II  D
Sbjct: 205 IINTD 209


>gi|169848164|ref|XP_001830790.1| hypothetical protein CC1G_03327 [Coprinopsis cinerea okayama7#130]
 gi|116508264|gb|EAU91159.1| hypothetical protein CC1G_03327 [Coprinopsis cinerea okayama7#130]
          Length = 425

 Score = 44.4 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 49/313 (15%), Positives = 107/313 (34%), Gaps = 75/313 (23%)

Query: 32  DLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLG---ARKVIVIEKDQQFFPIL 86
           +     K+A +          ++E   GPG LT+ LL L     +K++++E    F   L
Sbjct: 95  NPETADKLANAFVPEGSKDKVIVEAYPGPGQLTRSLLKLPRERIKKIVLMEPIPGFLEWL 154

Query: 87  KDISSQHPNRLEI------------------IQDDALKVDFEKFFNISSPIRIIANLPYN 128
           K +  +  +R+ +                     D   +D+     +   +  I +LP  
Sbjct: 155 KPL-EELDDRISVMAVDPWIWSSYDELQEAGHLADVPILDWN--AGVHPTLHFIQHLPSI 211

Query: 129 -IGTRLLFNWISADTWPPFWESL------TLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
            +G +LL  +I       +           ++  + +       +++   G+L V     
Sbjct: 212 VLGEQLLNQYIRTIPDQHWLYKYGRIPLDMVISARMLQRLTATTQDTNQRGKLGVFR--- 268

Query: 182 TKATMMFD--ISPHVFFP-----SPKVTSTV------------------IHFIPHLNPI- 215
            +AT +    + P    P      P   ++                   +  +    P+ 
Sbjct: 269 -EATSVVTTPVPPSELDPYDEHFYPVRKASTSNASKALEDRKAGNPHLALRIMALDEPLI 327

Query: 216 -PCCLESLKKITQEAFGKR----RKTL-------RQSLKRLGGENLLHQAGIETNLRAEN 263
            P  LE+   +T++ F  +     K++          LK L   +L  +  ++ + R + 
Sbjct: 328 KPKTLETWDYVTRKLFISKATPVSKSIQTLAPGANAILKYLTDPDLPAEQQLDVSKRPQE 387

Query: 264 LSIEDFCRITNIL 276
           L++ ++  I N  
Sbjct: 388 LTVHEWALIVNAF 400


>gi|157418095|ref|YP_001481167.1| adenine-specific DNA methylase [Escherichia coli APEC O1]
 gi|194446828|ref|YP_002038935.1| hypothetical protein SeKA_D0084 [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|218534520|ref|YP_002401050.1| putative adenine-specific DNA methylase [Escherichia coli S88]
 gi|88770145|gb|ABD51582.1| adenine-specific DNA methylase [Escherichia coli APEC O1]
 gi|194358580|gb|ACF57023.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|218349724|emb|CAQ87117.1| putative adenine-specific DNA methylase [Escherichia coli S88]
 gi|301130360|gb|ADK62161.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky]
 gi|301130488|gb|ADK62288.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky]
 gi|315285083|gb|EFU44528.1| conserved hypothetical protein [Escherichia coli MS 110-3]
 gi|323948857|gb|EGB44753.1| adenine-specific DNA methylase [Escherichia coli H252]
          Length = 187

 Score = 44.4 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +G  +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAGISNRDHILEPSAGTGAILRAIRDTAPVAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|293603156|ref|ZP_06685589.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
 gi|292818387|gb|EFF77435.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
          Length = 226

 Score = 44.4 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QN L    +  ++A+         V+EIG G G     LL   A++V  +E D +     
Sbjct: 69  QNMLA-PKVEARLAQELQLTKSDCVLEIGTGSGY-QAALLGYLAQQVTSVEIDSRLVTFA 126

Query: 87  KDISSQHP-NRLEIIQDDA 104
           +     +    +++   DA
Sbjct: 127 QQNLQMNNVTNVKVETGDA 145


>gi|323525080|ref|YP_004227233.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1001]
 gi|323382082|gb|ADX54173.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1001]
          Length = 217

 Score = 44.4 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L    +  ++ +        +V+EIGAG G +   LL   A+ V+ ++ + +   +
Sbjct: 57  GQHMLA-PRVEARVLQELAVKKHESVLEIGAGSGYM-AALLAHRAQHVLTVDIEPELAEL 114

Query: 86  LK-DISSQHPNRLEIIQDD 103
            K ++ +     +E+   D
Sbjct: 115 AKTNLIANGVLNVEVATGD 133


>gi|150019558|ref|YP_001311812.1| methyltransferase type 12 [Clostridium beijerinckii NCIMB 8052]
 gi|149906023|gb|ABR36856.1| Methyltransferase type 12 [Clostridium beijerinckii NCIMB 8052]
          Length = 308

 Score = 44.4 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 9/126 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I E        T++EIG+G G +T   L   A+KV  IE  ++   I    + +  N +E
Sbjct: 65  IVEWLPITKQDTILEIGSGCGAIT-GTLASKAKKVTCIELSEKRSLINAYRNKEKDN-IE 122

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           I   +  +   +        I +I    Y         +IS +     + ++      E 
Sbjct: 123 IWLGNF-EESEKDIVEKYDYITLIGVFEYG------EKYISTEKPYENFLTIIGKHLNEN 175

Query: 159 GERITA 164
           G+ I A
Sbjct: 176 GKIIIA 181


>gi|229892184|sp|B7GIU6|Y758_ANOFW RecName: Full=Uncharacterized methyltransferase Aflv_0758
          Length = 212

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 18/161 (11%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I  +     G  V+E G G GNLT+ L+    + V  IE        +++++ +    + 
Sbjct: 37  ILNTVVEKSGNVVLEFGVGTGNLTKKLIEAN-KTVYGIEP----SAPMRELAKEKLGHVT 91

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLL 153
           I   D L+       N      +     +++  +     I               + T  
Sbjct: 92  IEDGDFLQF---PLPNEPFDTIVSTYAFHHLTDQEKEEAIGKYSTLLRKGGKIVFADTAF 148

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTG--WRTKA---TMMFD 189
             +E  E + A+     +  L+      + T       MF 
Sbjct: 149 INREAYEAMIAEAKQKGFVDLAEDLQREYYTTIPALEHMFT 189


>gi|271965451|ref|YP_003339647.1| ribosomal RNA adenine dimethylase [Streptosporangium roseum DSM
           43021]
 gi|270508626|gb|ACZ86904.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Streptosporangium roseum DSM 43021]
          Length = 202

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 20/172 (11%)

Query: 40  AESSGSLDGITVI-EIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNR 96
             +     G  VI E+G G G  T  +    A +   + +E + +    L    ++HP +
Sbjct: 33  VTTPVPHRGDPVIVELGPGTGAFTAEIQRRLAGRGHHMAVEINPRLADFLA---ARHP-K 88

Query: 97  LEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGTRLL-FNWISADTWPPFWESLTLLF 154
           ++++ DDA ++    +         I++ LP+   +       ++A T      +    F
Sbjct: 89  VDVVVDDAARLPQLLEGRGFYKADAIVSGLPWAAFSEETQTRLMTAVTAIMDSNTAFTTF 148

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF--FPSPKVTST 204
                +R+          RL        +      +   V+   P   V   
Sbjct: 149 AYSFAKRL--PPAQRFRQRL---LDTFEEV----VVGRTVWGNLPPAFVYHA 191


>gi|212638602|ref|YP_002315122.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
 gi|212560082|gb|ACJ33137.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
          Length = 217

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 18/161 (11%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I  +     G  V+E G G GNLT+ L+    + V  IE        +++++ +    + 
Sbjct: 42  ILNTVVEKSGNVVLEFGVGTGNLTKKLIEAN-KTVYGIEP----SAPMRELAKEKLGHVT 96

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLL 153
           I   D L+       N      +     +++  +     I               + T  
Sbjct: 97  IEDGDFLQF---PLPNEPFDTIVSTYAFHHLTDQEKEEAIGKYSTLLRKGGKIVFADTAF 153

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTG--WRTKA---TMMFD 189
             +E  E + A+     +  L+      + T       MF 
Sbjct: 154 INREAYEAMIAEAKQKGFVDLAEDLQREYYTTIPALEHMFT 194


>gi|159038870|ref|YP_001538123.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Salinispora arenicola CNS-205]
 gi|157917705|gb|ABV99132.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Salinispora arenicola CNS-205]
          Length = 383

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
             ++  + ++     G  V+EIG G G    +L     A+ V  +E D +     +    
Sbjct: 100 PGLMAAMLDALRVTGGERVLEIGTGTGYNAALLAHRLNAQDVTSVEVDARVADAARQRLV 159

Query: 92  QHPNRLEIIQDD 103
                L +I  D
Sbjct: 160 VAGYHLSVITGD 171


>gi|32487255|emb|CAD91222.1| putative methyltransferase [Nonomuraea sp. ATCC 39727]
          Length = 277

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 17/104 (16%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALK 106
           ++E+GAG G LT  LL LG  +V  +E        L+   +  P    +R  ++  D   
Sbjct: 67  ILELGAGTGRLTIPLLELG-WEVTALELSTAMLTTLRTRLADAPADLRDRCTLVHADMTA 125

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
               + F               I +    + +     P  + S+
Sbjct: 126 FKLGERFG------------TAILSPSTIDLLDDADRPGLYSSV 157


>gi|83719501|ref|YP_443450.1| hypothetical protein BTH_I2943 [Burkholderia thailandensis E264]
 gi|167621111|ref|ZP_02389742.1| hypothetical protein BthaB_32709 [Burkholderia thailandensis Bt4]
 gi|257137768|ref|ZP_05586030.1| hypothetical protein BthaA_00867 [Burkholderia thailandensis E264]
 gi|83653326|gb|ABC37389.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 378

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G  +V+  ++D++      +  ++  +  ++
Sbjct: 191 VARAPLPSTSLAFDIGVGTGVLAAVLASRGVERVVATDQDKRALACAAENVARLGYAQQV 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       ++ N P+
Sbjct: 251 EIVEAD--------LFPDGRAPLVVCNPPW 272


>gi|315613342|ref|ZP_07888251.1| methyltransferase domain protein [Streptococcus sanguinis ATCC
           49296]
 gi|315314577|gb|EFU62620.1| methyltransferase domain protein [Streptococcus sanguinis ATCC
           49296]
          Length = 196

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 58/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +G+N  FL D  +  KK+ +              G TV+++G G G L   L      + 
Sbjct: 24  LGENMTFLTDAGVFSKKMVDFGSQLLLKCLEVNKGETVLDVGCGYGPLGLSLAKAYGVQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++     I Q +  +    KF        +I+N P   G ++
Sbjct: 84  TMVDINNRALDLARQNAERNKIEATIFQSNIYEQVEGKF------DHVISNPPIRAGKQV 137

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 138 VHEIIEKSRDFLNDGGDLTIVIQK 161


>gi|257389243|ref|YP_003179016.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257171550|gb|ACV49309.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 234

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 25/176 (14%)

Query: 12  TILSHYKIIPKKYM---GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            +   Y     K     GQ  L+D    + + ++ G +D  +V+E+  G G  T ML   
Sbjct: 11  DVAEEYD---SKRFSRGGQ--LIDRREKEAVLDAIGPVDDKSVLEVACGTGRFTAMLADR 65

Query: 69  GARKVIVIEKDQQFFPIL-----KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           GA  ++ ++      P+L     K  S+   + LE ++ DA ++     F       ++A
Sbjct: 66  GAD-IVGLDI---SGPMLSQGREKAKSAGVDDHLEFMRGDAARLP----FPDDHFDTVVA 117

Query: 124 NLPYNIG---TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
              +++       L           F+++      +           S  Y R  V
Sbjct: 118 MRFFHLADTPASFLAEMRRVSKHQVFFDTFNRFSLR-SLYNWALPMGSRLYSRWEV 172


>gi|312195848|ref|YP_004015909.1| methyltransferase type 11 [Frankia sp. EuI1c]
 gi|311227184|gb|ADP80039.1| Methyltransferase type 11 [Frankia sp. EuI1c]
          Length = 257

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          +     G  V+++GAG G LT  L+ LGA  V+ +E D      L+     
Sbjct: 33 ALAPAPGPRVLDLGAGTGKLTAALVALGAD-VVAVEPDPAMLTELRRALPA 82


>gi|295701014|ref|YP_003608907.1| methyltransferase type 12 [Burkholderia sp. CCGE1002]
 gi|295440227|gb|ADG19396.1| Methyltransferase type 12 [Burkholderia sp. CCGE1002]
          Length = 190

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDI 89
              +  ++A    + +G  VIE+G G G +T  LL  G R  ++IV+E+   F   L+  
Sbjct: 30  SRRLAARLAREVPAGNG-VVIELGGGTGAVTHALLENGVRTDRLIVVERSPTFVRHLRGR 88

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
               P    ++  DA ++ +    ++     +      ++  R +   +  D W      
Sbjct: 89  FPDVP----VMHADAARLAWCLPLDLRVDAIVSCLPLRSLPHREVDEIV--DQWRQVLRP 142

Query: 150 LTLLFQ 155
             ++ Q
Sbjct: 143 GGVVIQ 148


>gi|330827403|ref|YP_004390641.1| type 11 methyltransferase [Alicycliphilus denitrificans K601]
 gi|329312711|gb|AEB87125.1| Methyltransferase type 11 [Alicycliphilus denitrificans K601]
          Length = 679

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++  ++ E +    G+ V+E  AG G + + L      +V+ +E +      L       
Sbjct: 525 DLAARMVELADIEPGMRVLEPSAGTGRILEQLPEGC--EVVAVEINAALGGRL------D 576

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +R  ++  D L+   E  +      RI+ N P+     +
Sbjct: 577 ADRRAVVIGDFLQCTPETLWGSFD--RILMNPPFANADDI 614


>gi|326427282|gb|EGD72852.1| hypothetical protein PTSG_04580 [Salpingoeca sp. ATCC 50818]
          Length = 301

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQH 93
           ++  I        G+  +EIG G G ++  LL          I+ D     + +  +S+ 
Sbjct: 112 LVDLIQRKLRQQHGLHFLEIGVGSGAISLSLLHENPSWTATGIDLDDAAIQLTQHNASRC 171

Query: 94  --PNRLEIIQDDALK-VDFEKFFNISSPIRIIANLPY 127
              +RL + + D          F+      +++N PY
Sbjct: 172 GVADRLTLHKQDITTATPSSPCFSSGPFDFVVSNPPY 208


>gi|146304910|ref|YP_001192226.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Metallosphaera sedula DSM 5348]
 gi|145703160|gb|ABP96302.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Metallosphaera sedula DSM 5348]
          Length = 207

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNR 96
           K+ +  G   G  V+E+G G G  T ++   +G   V  IE D       ++       +
Sbjct: 64  KMLDYLGLKRGDKVLEVGTGCGYYTALIAEIVGPENVTTIEVDPWIARYAEERLQDLGIK 123

Query: 97  LEIIQD 102
           ++I   
Sbjct: 124 VQIGDG 129


>gi|86743142|ref|YP_483542.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. CcI3]
 gi|86570004|gb|ABD13813.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. CcI3]
          Length = 400

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD-I 89
            +++  + E +G   G  V+EIG   G    +L  L     +V  IE D++     +  +
Sbjct: 72  PSLVAAMLEQAGVHPGHRVLEIGTATGINAALLAELTGPTGQVTTIEIDEELAAGARTAL 131

Query: 90  SSQHPNRLEIIQDD 103
                 R++++  D
Sbjct: 132 VKAGYERVDVVHAD 145


>gi|221194752|ref|ZP_03567809.1| RNA methyltransferase, RsmD family [Atopobium rimae ATCC 49626]
 gi|221185656|gb|EEE18046.1| RNA methyltransferase, RsmD family [Atopobium rimae ATCC 49626]
          Length = 220

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 10/150 (6%)

Query: 33  LNILKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             I   I  + G  L+ ++V++  AG G +   LL+ GA  V  +++D++    ++  + 
Sbjct: 31  EAIASSILAAFGLNLENVSVLDAFAGSGAMGLELLSRGASHVTFVDQDRKTAARIQKNAQ 90

Query: 92  QHPNR---LEIIQDDALKVDFEKFFNISSPIRIIANLPY----NIGTRLLFNWISADTWP 144
               R   ++++  + L++   K    +    +  + PY       + LL + ++  T  
Sbjct: 91  SLGARAQEVDVLCHNTLRLAERKILPGAPFDIVFLDPPYAFEGAQISALLDSLVAVGTLA 150

Query: 145 P--FWESLTLLFQKEVGERITAQKNSPHYG 172
           P              + +       S  YG
Sbjct: 151 PNALIVYEHGAATLGIAQESMVSVKSKRYG 180


>gi|209886603|ref|YP_002290460.1| protein-L-isoaspartate [Oligotropha carboxidovorans OM5]
 gi|209874799|gb|ACI94595.1| protein-L-isoaspartate [Oligotropha carboxidovorans OM5]
          Length = 305

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKD 88
             ++  K+ E+ G   G  V+ IGAG G    +   L+ L  R V  +E D       ++
Sbjct: 96  SPSLHAKLLEALGPKSGEHVVHIGAGSGYYSAMLSELVGLSGR-VTAVEFDPALADKARN 154

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
             S + N + ++  D  +    +   +     +
Sbjct: 155 NLSSYRN-VTVVCGDGTRWPENEADGVYVNFAV 186


>gi|170697036|ref|ZP_02888132.1| Methyltransferase type 11 [Burkholderia ambifaria IOP40-10]
 gi|170138210|gb|EDT06442.1| Methyltransferase type 11 [Burkholderia ambifaria IOP40-10]
          Length = 196

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             ++ +++A+     DG  V+E+G G G +T  LL  G   R+++V+E+   F   L+  
Sbjct: 31  SRHLAREMADVVPDGDG-LVVELGGGTGAITAALLERGVAPRRLVVVERSPAFVQHLRRR 89

Query: 90  SSQHPNRLEIIQDDA 104
                  + I+  DA
Sbjct: 90  FPG----ISIVSGDA 100


>gi|172062349|ref|YP_001810000.1| methyltransferase type 11 [Burkholderia ambifaria MC40-6]
 gi|171994866|gb|ACB65784.1| Methyltransferase type 11 [Burkholderia ambifaria MC40-6]
          Length = 196

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             ++ +++A+     DG  V+E+G G G +T  LL  G   R+++V+E+   F   L+  
Sbjct: 31  SRHLAREMADVVPDGDG-LVVELGGGTGAITAALLERGVAPRRLVVVERSPAFVQHLRRR 89

Query: 90  SSQHPNRLEIIQDDA 104
                  + I+  DA
Sbjct: 90  FPG----ISIVSGDA 100


>gi|218671675|ref|ZP_03521344.1| probable L-isoaspartyl protein carboxyl methyltransferase protein
           [Rhizobium etli GR56]
          Length = 262

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G  V+E+G G G     LL+  AR V  IE+ ++     ++   +
Sbjct: 63  PFIVALMIEKAHLGAGDKVLEVGTGSGY-ASALLSRIARHVYTIERHERLALQARERFEK 121

Query: 93  H-PNRLEIIQDD 103
                +++   D
Sbjct: 122 LGYGNVDVRVGD 133


>gi|171322206|ref|ZP_02911055.1| Methyltransferase type 11 [Burkholderia ambifaria MEX-5]
 gi|171092472|gb|EDT37813.1| Methyltransferase type 11 [Burkholderia ambifaria MEX-5]
          Length = 196

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             ++ +++A+     DG  V+E+G G G +T  LL  G   R+++V+E+   F   L+  
Sbjct: 31  SRHLAREMADVVPDGDG-LVVELGGGTGAITAALLERGVAPRRLVVVERSPAFVQHLRRR 89

Query: 90  SSQHPNRLEIIQDDA 104
                  + I+  DA
Sbjct: 90  FPG----ISIVSGDA 100


>gi|332019818|gb|EGI60279.1| Methyltransferase-like protein 5 [Acromyrmex echinatior]
          Length = 211

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 19/176 (10%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             + G +V ++G+G G L+     LGA  V+  E D +   I     S     +E++Q D
Sbjct: 48  DDIKGKSVADLGSGCGTLSLGAKMLGAEYVLGFEIDSEAVDIQHRNCSDIELFVEVVQCD 107

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
            L+    KF      + +           +   ++ A        +      K       
Sbjct: 108 VLQYLPGKFQKYFDTVIMNPPFGTKNNAGIDIKFLEAA--IRLSSNAVYSLHK------- 158

Query: 164 AQKNSPHYGRLSVLTGWRTK----ATMMFDISPHVFF-PSPKVTSTV--IHFIPHL 212
              ++  Y  LS  T    +    A + +D+     F     V   V  I F    
Sbjct: 159 --SSTRDY-VLSKATQLGARGTVIAELRYDLPRAYKFHKKASVDIQVDFIRFELKR 211


>gi|226360003|ref|YP_002777781.1| tRNA methyltransferase [Rhodococcus opacus B4]
 gi|226238488|dbj|BAH48836.1| putative tRNA methyltransferase [Rhodococcus opacus B4]
          Length = 284

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 7/152 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL       +VI  E            ++  
Sbjct: 93  AAQIVHEGDVFPGARVLEAGAGSGALTCSLLRAVGPEGRVISYEVRDDHAEHAVRNVETF 152

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
             + P   ++   D  + D E        + +    P++     +   +        + +
Sbjct: 153 FGERPENWDLTIADVAEFDAEAAGGPVDRVVLDMLAPWD-ALPAVSKALVPGGVLVVYVA 211

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
                 K V      +  +      S++ GW 
Sbjct: 212 TVTQLSKVVEAMREQECWTEPRSWESIVRGWH 243


>gi|115359904|ref|YP_777042.1| methyltransferase type 11 [Burkholderia ambifaria AMMD]
 gi|115285192|gb|ABI90708.1| Methyltransferase type 11 [Burkholderia ambifaria AMMD]
          Length = 196

 Score = 44.0 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             ++ +++A+     DG  V+E+G G G +T  LL  G   R+++V+E+   F   L+  
Sbjct: 31  SRHLAREMADVVPDGDG-LVVELGGGTGAITAALLERGVAPRRLVVVERSPAFVQHLRRR 89

Query: 90  SSQHPNRLEIIQDDA 104
                  + I+  DA
Sbjct: 90  FPG----ISIVSGDA 100


>gi|307325446|ref|ZP_07604648.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
 gi|306888915|gb|EFN19899.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
          Length = 379

 Score = 44.0 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
             I+ ++  +  + DG  V+EIGAG G    +L    G  +V  +E D +     +    
Sbjct: 94  PRIVARMLAALRAEDGHRVLEIGAGTGYNAALLAARLGDEQVTSVEVDAELAKRARASLK 153

Query: 92  QHPNRLEIIQDD 103
                  ++  D
Sbjct: 154 TAGYAPAVVTGD 165


>gi|301793981|emb|CBW36379.1| putative methyltransferase [Streptococcus pneumoniae INV104]
          Length = 193

 Score = 44.0 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 61/144 (42%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+ +              G TV+++G G G L   L+ +   + 
Sbjct: 21  LGQKMTFLTDAGVFSKKMVDFGSQLLLKCLDVNQGETVLDVGCGYGPLGLSLVKVYGVQA 80

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +  +   E  F+      +I+N P   G ++
Sbjct: 81  TMVDINTRALDLARRNAEKNNAKATIFQSNIYE-QVEGHFD-----HVISNPPIRAGKQV 134

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 135 VHEIIEKSKDFLETGGDLTIVIQK 158


>gi|134094899|ref|YP_001099974.1| hypothetical protein HEAR1692 [Herminiimonas arsenicoxydans]
 gi|133738802|emb|CAL61849.1| Conserved hypothetical protein, putative SAM-dependent
           methyltransferase [Herminiimonas arsenicoxydans]
          Length = 373

 Score = 44.0 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRL 97
              +         +IG G G +  +L   G  KVI  ++D +     ++  ++    +R+
Sbjct: 187 IAEAPLPATSLAFDIGTGTGVIAALLAHRGVAKVIATDQDARALACARENMTRLDMRDRV 246

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++I+ D         F       I+ N P+
Sbjct: 247 DVIEAD--------LFPPGKAALIVCNPPW 268


>gi|151945932|gb|EDN64164.1| mitochondrial transcription factor [Saccharomyces cerevisiae
           YJM789]
          Length = 341

 Score = 44.0 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 104/339 (30%), Gaps = 82/339 (24%)

Query: 3   MNNKSHSLKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT------VIE 53
           M+     +K I      Y           +L +  +  KI +               V++
Sbjct: 1   MSVPIPGIKDISKLKFFYGFK--------YLWNPTVYNKIFDKLDLTKTYKHPEELKVLD 52

Query: 54  IGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------ 106
           +  G G  + +       ++  ++EK    +  L       P  L+I++ D         
Sbjct: 53  LYPGVGIQSAIFYNKYCPKQYSLLEKRSSLYKFLNAKFEGSP--LQILKRDPYDWSTYSN 110

Query: 107 -VDFEKFF--------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTL 152
            +D E+ F        +I+     +AN+       L+  W+S      +        + L
Sbjct: 111 LIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLL 170

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD---------------------IS 191
                   ++ A+       + SV+    T   ++                        S
Sbjct: 171 WMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFS 230

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR---KTLRQSL------- 241
               +P+      ++   P        +++   +T+     +R    T+  SL       
Sbjct: 231 AAEIWPTKGKPIALVEMDPID--FDFDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQY 288

Query: 242 --KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              R+  ++LL +  I+       L+ ++F  +T +  +
Sbjct: 289 FNSRITDKDLLKKCPID-------LTNDEFIYLTKLFME 320


>gi|307609102|emb|CBW98543.1| hypothetical protein LPW_03721 [Legionella pneumophila 130b]
          Length = 258

 Score = 44.0 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                 +++IG G G  T+ +L+ +    V+ I+  +    + +D+S ++PN   + + D
Sbjct: 31  VNPTDKILDIGCGNGAFTKNILMKVPQGSVLGIDASENMLHLAQDVSKEYPN-FSVQKAD 89

Query: 104 ALKVDFEKFFN 114
            L +DF   F+
Sbjct: 90  VLTMDFHLQFD 100


>gi|148548380|ref|YP_001268482.1| trans-aconitate 2-methyltransferase [Pseudomonas putida F1]
 gi|148512438|gb|ABQ79298.1| Trans-aconitate 2-methyltransferase [Pseudomonas putida F1]
          Length = 258

 Score = 44.0 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ 92
             ++ +  +          ++G GPGN T++LL      +V  ++ D       ++    
Sbjct: 17  RAVRDLIAAIPPRPVRHATDLGCGPGNSTEVLLQRYPDAQVTALDSDPDMIDKARERKRL 76

Query: 93  HPNRLEIIQDDA 104
              R+  +  D 
Sbjct: 77  CIPRVRTVIADI 88


>gi|315185285|gb|EFU19063.1| Methyltransferase type 11 [Spirochaeta thermophila DSM 6578]
          Length = 263

 Score = 44.0 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + +++   +       ++EIG G G LT++LL   A    +I  D    P  +     HP
Sbjct: 39  LCERVVSFAPPAP--YIMEIGCGTGFLTRLLLNRCA-PARLITND--LVPEAQTYLPPHP 93

Query: 95  NRLEIIQDDALKVDFEKFFNI 115
             +  I  DA K+D+    +I
Sbjct: 94  A-VYFIAGDAEKIDYPAPLDI 113


>gi|262040744|ref|ZP_06013976.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041910|gb|EEW42949.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 214

 Score = 44.0 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            V+++  GPG+ +  LL    A +V  I+ D     + K+  S++ +R++    D    D
Sbjct: 8   HVVDLACGPGSFSMRLLNRFPAIRVTAIDLDPLLLTLAKEALSEYKDRIQFFSGDIATAD 67

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
                        I + P  + +    +W+  +     + ++
Sbjct: 68  C---------FAAITDKPQAVVSSTAIHWLLPEQQVTLYRNI 100


>gi|153813192|ref|ZP_01965860.1| hypothetical protein RUMOBE_03608 [Ruminococcus obeum ATCC 29174]
 gi|149830723|gb|EDM85814.1| hypothetical protein RUMOBE_03608 [Ruminococcus obeum ATCC 29174]
          Length = 727

 Score = 44.0 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 55/154 (35%), Gaps = 15/154 (9%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +F    +I + I           V+EIG+G G +T  L    A+KV  IE  ++   I  
Sbjct: 56  HF---SHIRENILSWIPFTGEENVLEIGSGCGAVTGALCK-KAKKVTCIELSRKRSQINA 111

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG-----TRLL--FNWISA 140
                  N L+I+  +  +V+          I +I    Y        T  +     IS 
Sbjct: 112 WRHRDCDN-LKILMGNFQEVEK-TLTEKYDYITLIGVFEYGEAYIQSETPYVDFLKIISR 169

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
              P     + L  +  +G +  A     H+G L
Sbjct: 170 HLKPDG--KIVLAIENRLGLKYWAGCTEDHFGTL 201


>gi|237702731|ref|ZP_04533212.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|298378897|ref|ZP_06988779.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|301050118|ref|ZP_07197024.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|226903098|gb|EEH89357.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|298280506|gb|EFI22009.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300298153|gb|EFJ54538.1| conserved hypothetical protein [Escherichia coli MS 185-1]
          Length = 187

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +  +    +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRHVAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L+D      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRDNF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|3790599|gb|AAC68688.1| unknown [Rhodococcus erythropolis]
          Length = 324

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL       KVI  E            ++  
Sbjct: 127 AAQIVHEGDVFPGARVLEAGAGSGALTCSLLRAVGPEGKVISYEVRDDHAEHAVRNVETF 186

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             + P   E+   D  + D E        + +    P+++
Sbjct: 187 FGERPPNWELTIADLAEFDPEAHGGKVDRVVLDMLAPWDV 226


>gi|318060316|ref|ZP_07979039.1| Methyltransferase type 12 [Streptomyces sp. SA3_actG]
 gi|318079907|ref|ZP_07987239.1| Methyltransferase type 12 [Streptomyces sp. SA3_actF]
          Length = 241

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 19/110 (17%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILK 87
           L D        +  G    + V+E GAG G++T+ LL       ++ V+E + +F   L+
Sbjct: 47  LTDP------VDEHGPRP-LNVLEAGAGTGSVTRTLLHRLSPGSRLDVVEANPRFAARLR 99

Query: 88  DISSQHPN-----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            +   HP+     R+ +      ++D  + +++     I++ LP+     
Sbjct: 100 HLVRTHPSAGDRERVRVHHAYVERLDTGRRYDV-----IVSGLPFTNFAP 144


>gi|255282734|ref|ZP_05347289.1| methyltransferase, UbiE/COQ5 family [Bryantella formatexigens DSM
           14469]
 gi|255266755|gb|EET59960.1| methyltransferase, UbiE/COQ5 family [Bryantella formatexigens DSM
           14469]
          Length = 207

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           +  I+ KI +++G   G+ V+++  G G L    +  G   V  I+   +   I      
Sbjct: 30  NDEIIGKILDNTGIAAGMEVLDVACGTGVLFPYYIERGVSSVTGIDISPEMAKIAAQKCR 89

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             P  + +I  D   V+ +KF      I +    P+    R L   ++
Sbjct: 90  DVPE-IRVICGD---VEEQKFDRRFDAIVVYNAFPHFPDARRLIRTLA 133


>gi|209516570|ref|ZP_03265424.1| methyltransferase small [Burkholderia sp. H160]
 gi|209503011|gb|EEA03013.1| methyltransferase small [Burkholderia sp. H160]
          Length = 374

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALK 106
               +IG G G L  +L   G  K++  ++D +     ++  ++  +  ++EI+Q D   
Sbjct: 197 DLAFDIGTGTGVLAALLAKRGVGKIVATDQDSRALACARENLARLGYGEQVEIVQAD--- 253

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
                 F       ++ N P+        + +    + P    + L F   + + +T   
Sbjct: 254 -----LFPDGRAPLVVCNPPWVPARPA--SPLEYAVYDPD-SRMLLGFLNGLADHLT--P 303

Query: 167 NSPHYGRLS 175
               +  +S
Sbjct: 304 GGEGWLIIS 312


>gi|150025648|ref|YP_001296474.1| hypothetical protein FP1598 [Flavobacterium psychrophilum JIP02/86]
 gi|149772189|emb|CAL43665.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 204

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +         +I+IGAG  +    LL LG   + +++   +    +++   +    +  
Sbjct: 34  VKEFNLQKNAKIIDIGAGDSHFIDALLDLGFTNLYLLDISAKAIERIQERLGEKSKNVTF 93

Query: 100 IQDDALKVDFEKFFN 114
           I  D L    E  F+
Sbjct: 94  IVSDILDFHSEILFD 108


>gi|118602928|ref|YP_904143.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567867|gb|ABL02672.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 217

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NR 96
           ++ ++       TV+E+G G G LT +L  L  + V  IE ++      ++  +    + 
Sbjct: 68  RLLDALNIQRDETVLEVGTGSGYLTVVLSKLC-KSVTSIEINEALSHSAQEKINVLGIDN 126

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           + +   DA K  +   F     + I+++    I  R  F+ ++        E 
Sbjct: 127 INLKVGDASKGWYSDDF---FNVVIVSSSVPKITGRY-FHLLNVGGRIFVIEG 175


>gi|134283177|ref|ZP_01769878.1| putative methyltransferase [Burkholderia pseudomallei 305]
 gi|134245372|gb|EBA45465.1| putative methyltransferase [Burkholderia pseudomallei 305]
          Length = 378

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 191 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 251 EIVEAD--------LFPDGRAPLIVCNPPW 272


>gi|170756890|ref|YP_001780122.1| methlytransferase,-like protein [Clostridium botulinum B1 str.
           Okra]
 gi|169122102|gb|ACA45938.1| putative methlytransferase [Clostridium botulinum B1 str. Okra]
          Length = 196

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++ I   +   +G  V++IG+G G L   L  +      +  I+  +    + K+     
Sbjct: 25  IEYILSKANLKEGDRVLDIGSGTGVLIPYLENIISNNGNIAAIDIAENMLKVSKE--KNK 82

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
            + L+ I  D L+   +K FN
Sbjct: 83  YSNLKFIVGDFLEYKSKKTFN 103


>gi|217424809|ref|ZP_03456306.1| putative methyltransferase [Burkholderia pseudomallei 576]
 gi|254300708|ref|ZP_04968153.1| putative methyltransferase [Burkholderia pseudomallei 406e]
 gi|157810542|gb|EDO87712.1| putative methyltransferase [Burkholderia pseudomallei 406e]
 gi|217392265|gb|EEC32290.1| putative methyltransferase [Burkholderia pseudomallei 576]
          Length = 378

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 191 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 251 EIVEAD--------LFPDGRAPLIVCNPPW 272


>gi|116749940|ref|YP_846627.1| SAM-dependent methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116699004|gb|ABK18192.1| tRNA (adenine-58-N(1)-) methyltransferase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 303

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 11/98 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
           L  I           ++E G G G LT  LL    G  K+I +EK  +F    +    Q 
Sbjct: 124 LSAIVFYGDIQPENVIVESGIGSGALTLALLRAMGGRGKLISVEKRPEFALAARRNVHQF 183

Query: 94  ----PNRLEIIQDDALKVDF-----EKFFNISSPIRII 122
               P+  EI+  D             F ++  P   I
Sbjct: 184 FDGRPDNHEIVVADIQDFCMNVKADRVFLDLPEPWHAI 221


>gi|238916234|ref|YP_002929751.1| hypothetical protein EUBELI_00268 [Eubacterium eligens ATCC 27750]
 gi|238871594|gb|ACR71304.1| Hypothetical protein EUBELI_00268 [Eubacterium eligens ATCC 27750]
          Length = 646

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            +   V+EIG G G +T+ LL      V  +E  ++          ++ N LEII  +  
Sbjct: 80  KEQSDVLEIGCGMGAITE-LLCKKCNSVTAVELSKRRATATYLRCREYDN-LEIIVGNLN 137

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            + FEK ++  + I ++        +   F 
Sbjct: 138 DIGFEKKYDYITLIGVLEYQNNFTSSSNPFK 168


>gi|157145102|ref|YP_001452421.1| hypothetical protein CKO_00833 [Citrobacter koseri ATCC BAA-895]
 gi|157082307|gb|ABV11985.1| hypothetical protein CKO_00833 [Citrobacter koseri ATCC BAA-895]
          Length = 214

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            V+++  GPG+ +  LL    A +V  I+ D     + K+  S++ +R++    D    D
Sbjct: 8   HVVDLACGPGSFSMRLLNRFPAIRVTAIDLDPLLLTLAKEALSEYKDRIQFFSGDIATAD 67

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
                        I + P  + +    +W+  +     + ++
Sbjct: 68  C---------FAAITDKPQAVVSSTAIHWLLPEQQVALYRNI 100


>gi|145508435|ref|XP_001440167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407373|emb|CAK72770.1| unnamed protein product [Paramecium tetraurelia]
          Length = 457

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 33  LNILKKIAESSGSLDGITVI--EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            +    IA          VI  ++G G G  T  L       VI +E D +F  + K   
Sbjct: 128 EHTPDNIARYIAKRMKEFVIITDLGCGTGGNTVQLAKEC-HYVIGVEIDSKFIELAKKNC 186

Query: 91  SQHPNRLEIIQDDALKVDF 109
                 +++I  D   ++ 
Sbjct: 187 QNSIVNVDLINADIFTLNN 205


>gi|52840537|ref|YP_094336.1| hypothetical protein lpg0282 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627648|gb|AAU26389.1| hypothetical protein lpg0282 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 258

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
                   V++IG G G  T+ +L+ +    V+ I+  +    + +D+S ++PN   + +
Sbjct: 29  LNMKPADKVLDIGCGNGAFTKNILMKVPQGSVLGIDASENMLHLAQDVSKEYPN-FSVQK 87

Query: 102 DDALKVDFEKFFN 114
            D L +DF   F+
Sbjct: 88  ADVLTMDFHLQFD 100


>gi|54293286|ref|YP_125701.1| hypothetical protein lpl0334 [Legionella pneumophila str. Lens]
 gi|53753118|emb|CAH14565.1| hypothetical protein lpl0334 [Legionella pneumophila str. Lens]
          Length = 258

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
                   V++IG G G  T+ +L+ +    V+ I+  +    + +D+S ++PN   + +
Sbjct: 29  LNMKPADKVLDIGCGNGAFTKNILMKVPQGSVLGIDASENMLHLAQDVSKEYPN-FSVQK 87

Query: 102 DDALKVDFEKFFN 114
            D L +DF   F+
Sbjct: 88  ADVLTMDFHLQFD 100


>gi|326774369|ref|ZP_08233634.1| Methyltransferase type 11 [Streptomyces cf. griseus XylebKG-1]
 gi|326654702|gb|EGE39548.1| Methyltransferase type 11 [Streptomyces cf. griseus XylebKG-1]
          Length = 374

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I+  + ++    +G  V+E+G G G     LL     +V+ +E D +     +       
Sbjct: 93  IVATMLDTLAVEEGHRVLELGTGVG-WNAALLGERTSQVVTVEIDPELGAHARRRLEAAG 151

Query: 95  NRLEIIQDD 103
            R E++  D
Sbjct: 152 CRAEVVIGD 160


>gi|126455020|ref|YP_001067862.1| putative methyltransferase [Burkholderia pseudomallei 1106a]
 gi|167721425|ref|ZP_02404661.1| hypothetical protein BpseD_20615 [Burkholderia pseudomallei DM98]
 gi|167817608|ref|ZP_02449288.1| hypothetical protein Bpse9_20891 [Burkholderia pseudomallei 91]
 gi|167826010|ref|ZP_02457481.1| hypothetical protein Bpseu9_20234 [Burkholderia pseudomallei 9]
 gi|167847498|ref|ZP_02473006.1| hypothetical protein BpseB_19644 [Burkholderia pseudomallei B7210]
 gi|167896086|ref|ZP_02483488.1| hypothetical protein Bpse7_20243 [Burkholderia pseudomallei 7894]
 gi|167912733|ref|ZP_02499824.1| hypothetical protein Bpse112_19751 [Burkholderia pseudomallei 112]
 gi|167920693|ref|ZP_02507784.1| hypothetical protein BpseBC_19251 [Burkholderia pseudomallei
           BCC215]
 gi|226198212|ref|ZP_03793783.1| putative methyltransferase [Burkholderia pseudomallei Pakistan 9]
 gi|242315592|ref|ZP_04814608.1| putative methyltransferase [Burkholderia pseudomallei 1106b]
 gi|254198534|ref|ZP_04904955.1| putative methyltransferase [Burkholderia pseudomallei S13]
 gi|126228662|gb|ABN92202.1| putative methyltransferase [Burkholderia pseudomallei 1106a]
 gi|169655274|gb|EDS87967.1| putative methyltransferase [Burkholderia pseudomallei S13]
 gi|225929732|gb|EEH25748.1| putative methyltransferase [Burkholderia pseudomallei Pakistan 9]
 gi|242138831|gb|EES25233.1| putative methyltransferase [Burkholderia pseudomallei 1106b]
          Length = 378

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 191 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 251 EIVEAD--------LFPDGRAPLIVCNPPW 272


>gi|254258065|ref|ZP_04949119.1| putative methyltransferase [Burkholderia pseudomallei 1710a]
 gi|254216754|gb|EET06138.1| putative methyltransferase [Burkholderia pseudomallei 1710a]
          Length = 378

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 191 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 251 EIVEAD--------LFPDGRAPLIVCNPPW 272


>gi|53723955|ref|YP_104327.1| hypothetical protein BMA2811 [Burkholderia mallei ATCC 23344]
 gi|67640666|ref|ZP_00439464.1| putative methyltransferase [Burkholderia mallei GB8 horse 4]
 gi|121599904|ref|YP_991386.1| hypothetical protein BMASAVP1_A0034 [Burkholderia mallei SAVP1]
 gi|126450783|ref|YP_001082684.1| putative methyltransferase [Burkholderia mallei NCTC 10247]
 gi|167001391|ref|ZP_02267190.1| putative methyltransferase [Burkholderia mallei PRL-20]
 gi|254174975|ref|ZP_04881636.1| putative methyltransferase [Burkholderia mallei ATCC 10399]
 gi|254206741|ref|ZP_04913092.1| putative methyltransferase [Burkholderia mallei JHU]
 gi|254357230|ref|ZP_04973504.1| putative methyltransferase [Burkholderia mallei 2002721280]
 gi|52427378|gb|AAU47971.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|121228714|gb|ABM51232.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|126243653|gb|ABO06746.1| putative methyltransferase [Burkholderia mallei NCTC 10247]
 gi|147752283|gb|EDK59349.1| putative methyltransferase [Burkholderia mallei JHU]
 gi|148026294|gb|EDK84379.1| putative methyltransferase [Burkholderia mallei 2002721280]
 gi|160696020|gb|EDP85990.1| putative methyltransferase [Burkholderia mallei ATCC 10399]
 gi|238521429|gb|EEP84880.1| putative methyltransferase [Burkholderia mallei GB8 horse 4]
 gi|243062808|gb|EES44994.1| putative methyltransferase [Burkholderia mallei PRL-20]
          Length = 378

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 191 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 251 EIVEAD--------LFPDGRAPLIVCNPPW 272


>gi|323476892|gb|ADX82130.1| hypothetical protein SiH_0775 [Sulfolobus islandicus HVE10/4]
          Length = 319

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLT------LGARKVIVIEKDQQFFPILKDISSQHPNR 96
           S       V++ G G G   + ++       +   +++ +E D +     +   +    +
Sbjct: 7   SNPSPNARVLDAGCGEGVFIEAIIKWYSERGIELPEIVGVEIDHKLAERARKKFNNIS-K 65

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++II+DD L V  EK         II+N PY
Sbjct: 66  VKIIEDDFLTVKEEKLGGEFD--YIISNPPY 94


>gi|126439089|ref|YP_001060611.1| putative methyltransferase [Burkholderia pseudomallei 668]
 gi|126218582|gb|ABN82088.1| putative methyltransferase [Burkholderia pseudomallei 668]
          Length = 378

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 191 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 251 EIVEAD--------LFPDGRAPLIVCNPPW 272


>gi|228993112|ref|ZP_04153034.1| Dimethyladenosine transferase [Bacillus pseudomycoides DSM 12442]
 gi|228766571|gb|EEM15212.1| Dimethyladenosine transferase [Bacillus pseudomycoides DSM 12442]
          Length = 212

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            V+E G G GNLT  LL +G   V  IE  ++   I K      P    I + D L  D 
Sbjct: 48  NVLEFGVGTGNLTNKLLLVG-HTVYGIEPSREMRTIAKKKL---PEGFSITEGDFLSFDV 103

Query: 110 EKFFN 114
               +
Sbjct: 104 PDSID 108


>gi|167740392|ref|ZP_02413166.1| hypothetical protein Bpse14_20175 [Burkholderia pseudomallei 14]
          Length = 372

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 185 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 244

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 245 EIVEAD--------LFPDGRAPLIVCNPPW 266


>gi|124385094|ref|YP_001027712.1| hypothetical protein BMA10229_A1732 [Burkholderia mallei NCTC
           10229]
 gi|254201398|ref|ZP_04907762.1| putative methyltransferase [Burkholderia mallei FMH]
 gi|124293114|gb|ABN02383.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
 gi|147747292|gb|EDK54368.1| putative methyltransferase [Burkholderia mallei FMH]
          Length = 396

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 209 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 268

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 269 EIVEAD--------LFPDGRAPLIVCNPPW 290


>gi|320538470|ref|ZP_08038335.1| methyltransferase domain protein [Treponema phagedenis F0421]
 gi|320144687|gb|EFW36438.1| methyltransferase domain protein [Treponema phagedenis F0421]
          Length = 276

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 6/146 (4%)

Query: 38  KIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           KI   +G     T +++ G G G ++  L   GA KV  ++    F    +D +      
Sbjct: 61  KIIGVAGEKAKETCILDAGCGTGRISLELALRGA-KVTGVDLILPFLNAARDSAQDEEVD 119

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLF 154
           +E+IQ D  K    + F+ +  I +  +  Y          +   AD+  P    +  + 
Sbjct: 120 IELIQADLRKFLRPEGFHAA--ISLYTSFGYCETVEEDMKILKNIADSLKPQGWFILEMT 177

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGW 180
            +E+  R   +      G  +VLT +
Sbjct: 178 GREIAVRDFTEGEWFERGGFTVLTQF 203


>gi|294494993|ref|YP_003541486.1| tRNA methyltransferase complex GCD14 subunit [Methanohalophilus
           mahii DSM 5219]
 gi|292665992|gb|ADE35841.1| tRNA methyltransferase complex GCD14 subunit [Methanohalophilus
           mahii DSM 5219]
          Length = 250

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 16/105 (15%)

Query: 6   KSHSLKTILSHYK--IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           ++  +  +       I+P K +GQ           I   +G      ++E G G G L  
Sbjct: 64  RAPDMFRLAKRTGAPIMP-KDVGQ-----------IISHAGINSSDRILEAGTGSGVLAI 111

Query: 64  MLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKV 107
            L ++ A++VI  E  + F    + ++S    + +E+   D + V
Sbjct: 112 YLGSV-AKEVISYEIREDFVENARANLSMAGLSNVEVRCGDIVDV 155


>gi|163803378|ref|ZP_02197254.1| hypothetical protein 1103602000422_AND4_19002 [Vibrio sp. AND4]
 gi|159172840|gb|EDP57682.1| hypothetical protein AND4_19002 [Vibrio sp. AND4]
          Length = 239

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 48/165 (29%), Gaps = 16/165 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEI 99
                   +++IG G G L  M      +  V  ++ +           +Q P  +RL +
Sbjct: 38  VNCSPQDIILDIGTGTGLLALMCAQRFPSAHVTALDIEMSAIEAAHQNFAQSPWSDRLRL 97

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGT-------RLLFNWISADTWPPFWESLTL 152
              D L+ + E+ F      RII N PY           R               +    
Sbjct: 98  HYTDVLQFEPEQRFE-----RIICNPPYFNSGEQSKKSQRATARHTDTLQHSELLKRCYE 152

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           L  +E          +     +S+        + +  + P    P
Sbjct: 153 LLVEEGTASFV-LPITEGKQFISMALQQEWHLSRLCRVQPSQKKP 196


>gi|4310|emb|CAA31864.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 341

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 104/339 (30%), Gaps = 82/339 (24%)

Query: 3   MNNKSHSLKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT------VIE 53
           M+     +K I      Y           +L +  +  KI +               V++
Sbjct: 1   MSVPIPGIKDISKLKFFYGFK--------YLWNPTVYNKIFDKLDLTKTYKHPEELKVLD 52

Query: 54  IGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------ 106
           +  G G  + +       R+  ++EK    +  L       P  L+I++ D         
Sbjct: 53  LYPGVGIQSAIFYNKYCPRQYSLLEKSSSLYKFLNAKFEGSP--LQILKRDPYDWSTYSN 110

Query: 107 -VDFEKFF--------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTL 152
            +D E+ F        +I+     +AN+       L+  W+S      +        + L
Sbjct: 111 LIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLL 170

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD---------------------IS 191
                   ++ A+       + SV+    T   ++                        S
Sbjct: 171 WMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFS 230

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR---KTLRQSL------- 241
               +P+      ++   P        +++   +T+     +R    T+  SL       
Sbjct: 231 AAEIWPTKGKPIALVEMDPID--FDFDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQPI 288

Query: 242 --KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              R+  ++LL +  I+       L+ ++F  +T +  +
Sbjct: 289 FNSRITDKDLLKKCPID-------LTNDEFIYLTKLFME 320


>gi|13474772|ref|NP_106341.1| methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14025527|dbj|BAB52127.1| probable methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 247

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLE 98
            + +G   G  ++++G G G+LT  LL     +++  I+    F    + I      R++
Sbjct: 10  IDFAGISAGEKILDVGCGTGSLTFALLKAADLKEITAIDDSPVFVA--ETIRRSTDPRIK 67

Query: 99  IIQDD--ALKVDFEKF 112
           + Q D  AL  D   F
Sbjct: 68  VEQGDACALAFDDGAF 83


>gi|254180473|ref|ZP_04887071.1| putative methyltransferase [Burkholderia pseudomallei 1655]
 gi|184211012|gb|EDU08055.1| putative methyltransferase [Burkholderia pseudomallei 1655]
          Length = 378

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 191 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 251 EIVEAD--------LFPDGRAPLIVCNPPW 272


>gi|229493449|ref|ZP_04387234.1| tRNA (adenine-N(1)-)-methyltransferase [Rhodococcus erythropolis
           SK121]
 gi|229319410|gb|EEN85246.1| tRNA (adenine-N(1)-)-methyltransferase [Rhodococcus erythropolis
           SK121]
          Length = 307

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL       KVI  E            ++  
Sbjct: 110 AAQIVHEGDVFPGARVLEAGAGSGALTCSLLRAVGPEGKVISYEVRDDHAEHAVRNVETF 169

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             + P   E+   D  + D E        + +    P+++
Sbjct: 170 FGERPPNWELTIADLAEFDPEAHGGKVDRVVLDMLAPWDV 209


>gi|257053966|ref|YP_003131799.1| Methyltransferase type 11 [Halorhabdus utahensis DSM 12940]
 gi|256692729|gb|ACV13066.1| Methyltransferase type 11 [Halorhabdus utahensis DSM 12940]
          Length = 234

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 9/151 (5%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP--ILK 87
           L+D    + +  + G ++   V+EI  G G  T ML   GA  V+ ++           K
Sbjct: 27  LIDRREKQAVLNAIGPVEDSRVLEIACGTGRFTVMLAERGAD-VVGLDISSAMLKQGREK 85

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP-- 145
             S+   + LE ++ DA ++     F       +IA   +++                  
Sbjct: 86  ARSAGVQSHLEFMRGDAGRLP----FPDDHFDAVIAMRFFHLADTPASYLAEMRRVSKEV 141

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
            +      F             S  Y R  V
Sbjct: 142 VFFDTFNRFSTRSIYNWALPMGSRLYSRWEV 172


>gi|226306668|ref|YP_002766628.1| methyltransferase [Rhodococcus erythropolis PR4]
 gi|226185785|dbj|BAH33889.1| putative methyltransferase [Rhodococcus erythropolis PR4]
          Length = 307

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL       KVI  E            ++  
Sbjct: 110 AAQIVHEGDVFPGARVLEAGAGSGALTCSLLRAVGPEGKVISYEVRDDHAEHAVRNVETF 169

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             + P   E+   D  + D E        + +    P+++
Sbjct: 170 FGERPPNWELTIADLAEFDPEAHGGKVDRVVLDMLAPWDV 209


>gi|54654367|gb|AAV37057.1| methyltransferase [Streptomyces nodosus]
          Length = 212

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           LD  +L   AES  S     V E+G GPG +T  L  LG   V  ++       + ++  
Sbjct: 34  LDRAVLAAFAESVRSTGPGPVAELGCGPGRMTAHLRDLG-LDVFGVDLSPVMIDLARETY 92

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
                R E+   DAL +       + S   +I   P ++
Sbjct: 93  PDL--RFEVGSMDALDLADGGLRGVVSWYSVIHTPPAHV 129


>gi|26989265|ref|NP_744690.1| trans-aconitate 2-methyltransferase [Pseudomonas putida KT2440]
 gi|24984112|gb|AAN68154.1|AE016447_3 trans-aconitate methyltransferase, putative [Pseudomonas putida
           KT2440]
          Length = 272

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ 92
             ++ +  +          ++G GPGN T++LL      +V  ++ D       ++    
Sbjct: 31  RAVRDLIAAIPPRPVRHATDLGCGPGNSTEVLLQRYPDAQVTALDSDPDMIDKARERKRL 90

Query: 93  HPNRLEIIQDDA 104
              R+  +  D 
Sbjct: 91  CIPRVRTVIADI 102


>gi|300724642|ref|YP_003713967.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Xenorhabdus nematophila ATCC 19061]
 gi|297631184|emb|CBJ91879.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Xenorhabdus nematophila ATCC 19061]
          Length = 208

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E         V+EIG G G  T +L  L A+ V  +E+       L+  + +
Sbjct: 61  PYIVARMTELLDLTSDANVLEIGTGSGYQTAILAHL-AKHVFSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIGTRLLFNWISAD 141
              +L++        D    +    P    I+   P  I   LL   I   
Sbjct: 116 RFKQLDLHNISTRHGDGWNGWPSKGPFHAIIVTAAPPEIPQALLHQLIDGG 166


>gi|167622798|ref|YP_001673092.1| methyltransferase small [Shewanella halifaxensis HAW-EB4]
 gi|262828701|sp|B0TUD3|TRMN6_SHEHH RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|167352820|gb|ABZ75433.1| methyltransferase small [Shewanella halifaxensis HAW-EB4]
          Length = 246

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEII 100
           +  +   T+++IGAG G L+ M       K+  IE D       +     S    RLEII
Sbjct: 30  APLVQAKTILDIGAGSGLLSLMAAQRSQAKITAIELDNDAALDCQQNFDASHWSERLEII 89

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
             D       +         II N PY         +  +       +SL+     +  +
Sbjct: 90  CCDIQAYCQRE--QARQFDHIICNPPYFANGPQSSKF--SRATARHTDSLSFDALLQAIK 145

Query: 161 RITAQKNS 168
           ++ A +  
Sbjct: 146 QLLAPEGQ 153


>gi|124485896|ref|YP_001030512.1| Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein
           [Methanocorpusculum labreanum Z]
 gi|124363437|gb|ABN07245.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocorpusculum labreanum Z]
          Length = 176

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 8/119 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
                  G TV++IG G G +T  +  L  ++  V   D++   I     +     +EI+
Sbjct: 18  AKLAIRPGDTVVDIGCGTGTVTLEMAKLAGKEGYVYAVDRRHQAIECTQETCRDVDVEIV 77

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
             +AL        +   PI    +  +  G+R +   +           +      E  
Sbjct: 78  AGEALDF----LASPHKPI----DCAFLGGSRDIREILPHLQKEGTRSIVVNAVLLETA 128


>gi|193070426|ref|ZP_03051367.1| conserved hypothetical protein [Escherichia coli E110019]
 gi|192956245|gb|EDV86707.1| conserved hypothetical protein [Escherichia coli E110019]
          Length = 187

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|319783438|ref|YP_004142914.1| protein-L-isoaspartate O-methyltransferase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169326|gb|ADV12864.1| protein-L-isoaspartate O-methyltransferase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 663

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 62/210 (29%), Gaps = 16/210 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G  V+EIG G G     +++    +V  IE+        K    +
Sbjct: 64  PYIVAFMIEMADVKPGDHVLEIGTGSGY-AAAVMSRIVEQVYTIERHPGLAETAKRRFEK 122

Query: 93  HPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL-LFNWISADTWPPFWESL 150
              R +E+   D  K   +      +P   I       G  L L   +            
Sbjct: 123 LGYRNIEVRTGDGTKGWPQA-----APFDAIVVTASGPGAPLALQEQLDVGGRLVIPVGD 177

Query: 151 TLLFQK--EVGERITAQKNSPHYG----RLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
               Q+  +V     A  +   +G       +     ++   +  +   +  P P   S 
Sbjct: 178 DPDLQRLLKVTRTGAATYSEEDFGGVRFVPLIGEQGWSENGTVTKVGRPLRHPHP--ISL 235

Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRR 234
                    P+P   +       + F  RR
Sbjct: 236 PDMIAAAAEPLPDFDDPAFGALFDRFADRR 265


>gi|256394693|ref|YP_003116257.1| methyltransferase type 12 [Catenulispora acidiphila DSM 44928]
 gi|256360919|gb|ACU74416.1| Methyltransferase type 12 [Catenulispora acidiphila DSM 44928]
          Length = 257

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 33  LNIL-KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            NI+   +AE  G   G+ V+EIGAG G  T  LL  GA  V+ +E            + 
Sbjct: 18  PNIVFDLLAERCGLKPGVRVLEIGAGSGLATGPLLAAGAH-VVAVE--PGESLAALLAAD 74

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
              +RL I   D    D    F+++     +  L     T+ +   +  D W   W
Sbjct: 75  HACDRLHITVSDFETADLSPGFDLAVAASALHWLDPATSTQRIATLVRPDGWLAAW 130


>gi|187479541|ref|YP_787566.1| protein-L-isoaspartate O-methyltransferase [Bordetella avium 197N]
 gi|115424128|emb|CAJ50681.1| protein-L-isoaspartate O-methyltransferase [Bordetella avium 197N]
          Length = 226

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QN L    +  ++A+        +V+EIG G G     LL   AR+V  +E D +     
Sbjct: 69  QNMLA-PKLEARLAQELQLQAADSVLEIGTGSGY-QAALLAHLAREVTTVEIDSRLVAFA 126

Query: 87  KDISS 91
           +    
Sbjct: 127 QQNLQ 131


>gi|154317172|ref|XP_001557906.1| hypothetical protein BC1G_03488 [Botryotinia fuckeliana B05.10]
 gi|150844905|gb|EDN20098.1| hypothetical protein BC1G_03488 [Botryotinia fuckeliana B05.10]
          Length = 230

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 1  MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGS---LDGITVIEIGAG 57
          M   N +        +  I  +K  G     D  ++  I ES          TV++IG+G
Sbjct: 1  MAPINPAA---DFYDNLGIRYEKSFG----HDEGLIAFITESLSLLPATPNTTVLDIGSG 53

Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           G  T  L+    RK+  I+       + +        +L 
Sbjct: 54 TGIPTSSLVVNSGRKLYGIDFSPVMIELSRRQVPGGTFKLT 94


>gi|3758823|emb|CAA09857.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 196

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDI 89
              +  ++A  +      TV E+GAG G LT+ LL   A   ++   E   +    L+ +
Sbjct: 38  SPWLCNRMAGLADWTQATTVAELGAGDGVLTRRLLDRMAPDTQLDAWEIQPELVGQLRSL 97

Query: 90  SSQHPNRLEII 100
            ++H +RL++I
Sbjct: 98  -AEHDHRLQVI 107


>gi|310831063|ref|YP_003969706.1| putative DNA N6-adenine methyltransferase [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386247|gb|ADO67107.1| putative DNA N6-adenine methyltransferase [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 297

 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N +  I  +       T+IE  AG G   + +  L            +F+ IL      
Sbjct: 48  KNCIDSIKSNVIINKLDTIIEPSAGNGAFIEEIKHLCNNY--------KFYDIL------ 93

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
            P   EII+ D LK+D   F N    I II N P+   + +   +I       F ES++ 
Sbjct: 94  -PENNEIIKQDFLKLDVNNFKN--QKIHIIGNPPFGRQSSIAIKFI--KKCCLFAESISF 148

Query: 153 LFQKEVGERITAQKNSPHY 171
           +  K   +    +  + +Y
Sbjct: 149 ILPKSFKKESMRKYFNKYY 167


>gi|298385622|ref|ZP_06995180.1| SmtA protein [Bacteroides sp. 1_1_14]
 gi|298261763|gb|EFI04629.1| SmtA protein [Bacteroides sp. 1_1_14]
          Length = 237

 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IG G G +  ML         ++ +E D+      K+  ++ P  +R+E
Sbjct: 33  ASVQGAHRILDIGTGTGLVALMLAQRSLPDANIVALEIDEAAAVQAKENVARSPWKDRIE 92

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +++ D L       F++     I++N PY + +
Sbjct: 93  VVKQDFLSYQSPDKFDV-----IVSNPPYFVDS 120


>gi|260174909|ref|ZP_05761321.1| putative RNA methyltransferase [Bacteroides sp. D2]
 gi|315923152|ref|ZP_07919392.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697027|gb|EFS33862.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 236

 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IG G G +  ML        K++ +E D+      ++  ++ P   R+E
Sbjct: 33  ASVEGARRILDIGTGTGLVALMLAQRSLPDAKIVALEIDEAAAGQARENVARSPWRERVE 92

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           ++Q D  K      F++     I++N PY + +
Sbjct: 93  VVQADFKKYRSSDKFDV-----IVSNPPYFVDS 120


>gi|167904471|ref|ZP_02491676.1| hypothetical protein BpseN_19618 [Burkholderia pseudomallei NCTC
           13177]
          Length = 377

 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 190 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 250 EIVEAD--------LFPDGRAPLIVCNPPW 271


>gi|18978268|ref|NP_579625.1| l-isoaspartyl protein carboxyl methyltransferase [Pyrococcus
           furiosus DSM 3638]
 gi|18894089|gb|AAL82020.1| l-isoaspartyl protein carboxyl methyltransferase [Pyrococcus
           furiosus DSM 3638]
          Length = 253

 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD--ISSQHP 94
           I   +G   G  ++E G G G LT  L  +     +++  E  + F  +  +    +   
Sbjct: 85  IVAYAGISPGDFIVEAGVGSGALTLFLANIIGPTGRIVSYEIREDFAKLAWENIKWAGFD 144

Query: 95  NRLEIIQDDALKVDFEK-----FFNISSPIRII 122
           +R+EI   D  +   E+       ++  P R++
Sbjct: 145 DRVEIKIKDIYEGIDEENVDHVILDLPQPERVV 177


>gi|186477486|ref|YP_001858956.1| methyltransferase small [Burkholderia phymatum STM815]
 gi|184193945|gb|ACC71910.1| methyltransferase small [Burkholderia phymatum STM815]
          Length = 389

 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 21/141 (14%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L+ +L   G  +++  ++D +     ++  ++  +  ++
Sbjct: 203 VARAPLPSQKCAFDIGVGTGVLSAVLAKRGVARIVATDQDPRALACARENLTRLGYDKQV 262

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY---NIGTRLLFNWISADTWPPFWESLTLLF 154
           E+I  D         F       I+ N P+      + +       +    +   + L F
Sbjct: 263 ELIAAD--------LFPEGRAPLIVCNPPWLPARPASPI------ENAVYDYESRMLLGF 308

Query: 155 QKEVGERITAQKNSPHYGRLS 175
              + + +  +     +  LS
Sbjct: 309 LSGLADHL--EPGGEGWLILS 327


>gi|331650705|ref|ZP_08351751.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331040449|gb|EGI12633.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 187

 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|323191639|gb|EFZ76896.1| hypothetical protein ECRN5871_0076 [Escherichia coli RN587/1]
          Length = 187

 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|308270845|emb|CBX27455.1| hypothetical protein N47_H22770 [uncultured Desulfobacterium sp.]
          Length = 606

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                  ++E+G G G +T+ L   GA KVI +E  Q+   I  +     PN + I  D+
Sbjct: 76  NFGSSHRILELGCGCGAITRYLGETGA-KVIAVEGSQRRAVIAAERCRDLPN-VSIYCDN 133

Query: 104 ALKVDFEKFFNI 115
             + + ++ F++
Sbjct: 134 VAEFEIQEKFDV 145


>gi|85716196|ref|ZP_01047171.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrobacter sp. Nb-311A]
 gi|85697029|gb|EAQ34912.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrobacter sp. Nb-311A]
          Length = 211

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
             K     +L+   ++ ++ ++S       V+ +G   G  T  L+   A +V   E D 
Sbjct: 50  ASKR----YLIKPMVVARMIQASEIKSTDNVLVVGCATGY-TAALVAKLADRVTATESDP 104

Query: 81  QFFPILKDISSQHP-NRLEIIQDDALK 106
                  DI +    + + I+   A +
Sbjct: 105 GLAAKASDILASLGLDHVTIVTAAACE 131


>gi|255009352|ref|ZP_05281478.1| hypothetical protein Bfra3_09443 [Bacteroides fragilis 3_1_12]
 gi|313147109|ref|ZP_07809302.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135876|gb|EFR53236.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 237

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
               + +++IG G G +  ML       +  +E D+       +  ++ P  NR+E+IQ 
Sbjct: 35  VKSSVRILDIGTGTGLVALMLAQRSTASITALEIDEAAAAQATENINRSPWKNRIEVIQQ 94

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGT 131
           D      +    IS    I++N PY   +
Sbjct: 95  DFKHYSSKN--GISKFDTIVSNPPYFNAS 121


>gi|158341221|ref|YP_001522415.1| hypothetical protein AM1_F0111 [Acaryochloris marina MBIC11017]
 gi|158311462|gb|ABW33073.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 274

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++ ++ E +   +G  ++EIG GPG  T     LG   ++ +E +  F+ I +   S +P
Sbjct: 41  LISRVVELTQLENGSRILEIGCGPGTATVSFANLG-FSMLCLEPNPDFYEIARRNCSHYP 99

Query: 95  NRLEIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           N LEI      +   E K FN       I  +P  +    + N +  +       ++  +
Sbjct: 100 N-LEIKNTSFEEWKPEAKPFNAVLAATSIHWIPAEVAYPKVANALQDNGVLILLWNVPAI 158

Query: 154 FQKEV------GERITAQKNSPHYGR 173
             +E         +I A   S + GR
Sbjct: 159 PYREFHQVLQDVYQIHAPSLSHYKGR 184


>gi|158340651|ref|YP_001521819.1| hypothetical protein AM1_D0008 [Acaryochloris marina MBIC11017]
 gi|158310892|gb|ABW32505.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 275

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++ ++ E +   +G  ++EIG GPG  T     LG   ++ +E +  F+ I +   S +P
Sbjct: 42  LISRVVELTQLENGSRILEIGCGPGTATVSFANLG-FSMLCLEPNPDFYEIARRNCSHYP 100

Query: 95  NRLEIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           N LEI      +   E K FN       I  +P  +    + N +  +       ++  +
Sbjct: 101 N-LEIKNTSFEEWKPEAKPFNAVLAATSIHWIPAEVAYPKVANALQDNGVLILLWNVPAI 159

Query: 154 FQKEV------GERITAQKNSPHYGR 173
             +E         +I A   S + GR
Sbjct: 160 PYREFHQVLQDVYQIHAPSLSHYKGR 185


>gi|322804749|emb|CBZ02301.1| methlytransferase, UbiE/COQ5 family [Clostridium botulinum H04402
           065]
          Length = 196

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++ I   +   +G  V++IG+G G L   L  +      +  I+  +    + K+     
Sbjct: 25  IEYILSKANLKEGDRVLDIGSGTGVLIPYLENIISNNGDIAAIDIAENMLKVSKE--KNK 82

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
            + L+ I  D L+   +K FN
Sbjct: 83  YSNLKFIVGDFLEYKSKKTFN 103


>gi|186476997|ref|YP_001858467.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia phymatum STM815]
 gi|184193456|gb|ACC71421.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia phymatum STM815]
          Length = 217

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L    +  ++ +        +V+EIGAG G +   LL   A  V+ ++ + +   +
Sbjct: 57  GQHMLA-PRVEARVLQELAVKKHESVLEIGAGSGYM-AALLAHRALHVLTVDIEPELAGL 114

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            K   + +     ++  +    D  + +  ++P  II  
Sbjct: 115 AKANLAANG----VLNAEVATGDGARGWAAAAPYDIICV 149


>gi|153939459|ref|YP_001389839.1| methlytransferase,-like protein [Clostridium botulinum F str.
           Langeland]
 gi|152935355|gb|ABS40853.1| methlytransferase, homolog [Clostridium botulinum F str. Langeland]
 gi|295317925|gb|ADF98302.1| methyltransferase-like protein [Clostridium botulinum F str.
           230613]
          Length = 196

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++ I   +   +G  V++IG+G G L   L  +      +  I+  +    + K+     
Sbjct: 25  IEYILSKANLKEGDRVLDIGSGTGVLIPYLENIISNNGNIAAIDIAENMLKVSKE--KNK 82

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
            + L+ I  D L+   +K FN
Sbjct: 83  YSNLKFIVGDFLEYKSKKTFN 103


>gi|34582367|sp|Q9Y829|MTF1_SACDO RecName: Full=Mitochondrial transcription factor 1; AltName:
           Full=Mitochondrial transcription factor mtTFB
 gi|5139636|emb|CAA69994.1| mitochondrial transcription factor [Saccharomyces douglasii]
          Length = 341

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 110/340 (32%), Gaps = 84/340 (24%)

Query: 3   MNNKSHSLKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT------VIE 53
           M+     +K I      Y           +L +  +  +I +               V++
Sbjct: 1   MSIPIPGIKDISKLKFFYGFK--------YLWNPTVYNRIFDKLDLTKTYKHPQELKVLD 52

Query: 54  IGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------ 106
           +  G G  + +       ++  +IEK    +  L     + P  L+I++ D         
Sbjct: 53  LYPGVGVQSAIFYNKYCPKQYSLIEKRSSLYKFLNAKFEESP--LQILKKDPYDWSTYSS 110

Query: 107 -VDFEKFF--------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTL 152
            +D E+ F        +I+     +AN+       L+  W+S      +        + L
Sbjct: 111 LIDEERIFVPEVQPSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLL 170

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM----------FDISPHVFFPSPKVT 202
                  +++ A+ ++    + SV+    T   ++          FD      +  P + 
Sbjct: 171 WMPSTTAKKLLARPSTHARSKCSVVREAFTDTKLIAISDANELKGFDSHCIEEW-DPVIF 229

Query: 203 S------------TVIHFIPHLNPIPCCLESLKKITQEAFGKRR---KTLRQSL------ 241
           S             ++   P        +++   +T+     +R    T+  SL      
Sbjct: 230 SAADIWPTKGKPIALVEMDPID--FDFDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQ 287

Query: 242 ---KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
               R+  ++L+ +  I+       L+ ++F  +T +  +
Sbjct: 288 YFNSRITDKDLIKKCPID-------LTNDEFIYLTKLFME 320


>gi|27377350|ref|NP_768879.1| methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27350494|dbj|BAC47504.1| blr2239 [Bradyrhizobium japonicum USDA 110]
          Length = 264

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRL 97
            +     D   V++IG G G  + +L  +   K  V  IE D++      +    + N +
Sbjct: 91  IDLLDVGDKDHVVQIGCGLGYFSAVLSKIVGPKGSVRAIECDERLAARAANFLRAYRN-V 149

Query: 98  EIIQDD 103
           E++Q D
Sbjct: 150 EVVQGD 155


>gi|293365627|ref|ZP_06612336.1| methyltransferase domain protein [Streptococcus oralis ATCC 35037]
 gi|291315995|gb|EFE56439.1| methyltransferase domain protein [Streptococcus oralis ATCC 35037]
          Length = 196

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +G+N  FL D  +  KK+ +             +G TV+++G G G L   L      + 
Sbjct: 24  LGENMTFLTDAGVFSKKMVDFGSQLLLKCLEVNEGETVLDVGCGYGPLGLSLAKAYGVQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++     I Q +  +    KF        +I+N P   G ++
Sbjct: 84  TMVDINNRALDLARQNAERNKVEATIFQSNIYEQIEGKF------DHVISNPPIRAGKQV 137

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 138 VHEIIEKSREFLKDGGDLTIVIQK 161


>gi|168181341|ref|ZP_02616005.1| methlytransferase, homolog [Clostridium botulinum Bf]
 gi|237793795|ref|YP_002861347.1| putative methlytransferase [Clostridium botulinum Ba4 str. 657]
 gi|182675237|gb|EDT87198.1| methlytransferase, homolog [Clostridium botulinum Bf]
 gi|229261945|gb|ACQ52978.1| putative methlytransferase [Clostridium botulinum Ba4 str. 657]
          Length = 196

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++ I   +   +G  V++IG+G G L   L  +      +  I+  +    + K+     
Sbjct: 25  IEYILSKANLKEGDRVLDIGSGTGVLIPYLENIISNNGNIAAIDIAENMLKVSKE--KNK 82

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
            + L+ I  D L+   +K FN
Sbjct: 83  YSNLKFIVGDFLEYKSKKTFN 103


>gi|324998582|ref|ZP_08119694.1| type 11 methyltransferase [Pseudonocardia sp. P1]
          Length = 191

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           V+EIG G G  T+ L    +  +  +E D      L+D   +    +++   D
Sbjct: 38  VLEIGPGYGVTTRWLAPR-SGALTALEVDPVMAADLRDGLGRELG-VDVRHGD 88


>gi|284176162|ref|YP_003406439.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284017819|gb|ADB63766.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 275

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
            +++ +         V+++G G G + + +     GA  V+ ++ +++   + +  +++ 
Sbjct: 34  AERLIDEVDLESDDRVLDVGCGTGIVARRVADRVGGAGTVVGLDINEKMLEVAETTAAES 93

Query: 94  PNRLEIIQDDALKVDFEK 111
              +E    DA  + F  
Sbjct: 94  RLEVEWRHGDATDLPFSD 111


>gi|162456075|ref|YP_001618442.1| site-specific DNA-methyxltransferase (adenine-specific) [Sorangium
           cellulosum 'So ce 56']
 gi|161166657|emb|CAN97962.1| Site-specific DNA-methyxltransferase (adenine-specific) [Sorangium
           cellulosum 'So ce 56']
          Length = 511

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 23/133 (17%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNL----TQMLLTLGAR--- 71
             +  +GQ FL    +   +A       + I V++ GAG G+L    T        R   
Sbjct: 33  RARSELGQ-FLTPPPVASFMASLFERPCEDIRVLDAGAGVGSLLAAFTASACARRKRPSA 91

Query: 72  -KVIVIEKDQQFFPILKDISSQHPNRL---------EIIQDDALKVDFEKFFNISSPIRI 121
            +    E D +    L+  +    +            II+ D ++   E+          
Sbjct: 92  IRATGFEIDPRLAAYLRRTARACRDECAGAGIDFAARIIEADFIRSAVEQLDGGRPRP-- 149

Query: 122 IANLPYNIGTRLL 134
              +P +    +L
Sbjct: 150 --GMPRSFTHAIL 160


>gi|145593318|ref|YP_001157615.1| methyltransferase type 11 [Salinispora tropica CNB-440]
 gi|145302655|gb|ABP53237.1| Methyltransferase type 11 [Salinispora tropica CNB-440]
          Length = 265

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
            ++I    G   G  V ++GAG G LT  L         V  ++ D ++ P         
Sbjct: 31  TRRILTEIGLRPGWKVTDLGAGAGTLTSWLADQVGPGGHVTAVDLDPRYIPA-------- 82

Query: 94  PNRLEIIQDDA 104
              + +   D 
Sbjct: 83  GANVTVRAGDI 93


>gi|291007971|ref|ZP_06565944.1| adenine dimethylase [Saccharopolyspora erythraea NRRL 2338]
          Length = 221

 Score = 43.6 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 48  GITVIEIGAGPGNLTQML---LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              V+E+G G G+L+  +   L  GAR  I IE        L++    H   +E++  DA
Sbjct: 68  EPVVLELGPGTGSLSNGIHDRLPTGARH-IGIELGADMVEHLRE----HKPWMEVVHGDA 122

Query: 105 LK-VDFEKFFNISSPIRIIANLPYNI 129
              +       I     +++++P+++
Sbjct: 123 GDLLSILDQRGIGKVDAVVSSIPWSL 148


>gi|269126540|ref|YP_003299910.1| tRNA (adenine-N(1)-)-methyltransferase [Thermomonospora curvata DSM
           43183]
 gi|268311498|gb|ACY97872.1| tRNA (adenine-N(1)-)-methyltransferase [Thermomonospora curvata DSM
           43183]
          Length = 305

 Score = 43.6 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93
             +I   +    G  V+E GAG G LT  LL        V   E+   F  + +      
Sbjct: 109 AAQIVAMADIFPGARVVEAGAGSGALTCFLLRAVGEHGLVSSYERRPDFAEVARRNVETF 168


>gi|251799072|ref|YP_003013803.1| methyltransferase type 11 [Paenibacillus sp. JDR-2]
 gi|247546698|gb|ACT03717.1| Methyltransferase type 11 [Paenibacillus sp. JDR-2]
          Length = 213

 Score = 43.6 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            +I E+       T++E G G GNLT+ LL   + KV  IE  +      +   S+    
Sbjct: 35  DRILEAVAERVSGTIVEFGVGTGNLTEKLLKR-SDKVYGIEPSEGM----RREVSKRELP 89

Query: 97  LEIIQDDALKVD 108
           + ++  D L   
Sbjct: 90  IRLLDGDFLDFP 101


>gi|120404434|ref|YP_954263.1| tRNA (adenine-N(1)-)-methyltransferase [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957252|gb|ABM14257.1| tRNA (adenine-58-N(1)-) methyltransferase [Mycobacterium
           vanbaalenii PYR-1]
          Length = 275

 Score = 43.6 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD----I 89
             +I        G  V+E GAG G LT  LL       +V   E  +      +      
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPQGRVTSYEVREDHAEHAQRNVATF 147

Query: 90  SSQHPNRLEIIQDDALKVDFEKF 112
             + P   +++  D    D  + 
Sbjct: 148 FGEQPPNWDLVIADVADYDGPEV 170


>gi|306829680|ref|ZP_07462870.1| methyltransferase domain protein [Streptococcus mitis ATCC 6249]
 gi|304428766|gb|EFM31856.1| methyltransferase domain protein [Streptococcus mitis ATCC 6249]
          Length = 196

 Score = 43.6 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 58/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +G+N  FL D  +  KK+ +              G TV+++G G G L   L      + 
Sbjct: 24  LGENMTFLTDAGVFSKKMVDFGSQLLLKCLEVNKGETVLDVGCGYGPLGLSLAKAYGAQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++     I Q +  +    KF        +I+N P   G ++
Sbjct: 84  TMVDINNRALDLAQQNAERNKVEATIFQSNIYEQVEGKF------DHVISNPPIRAGKQV 137

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 138 VHEIIEKSRDFLKDGGDLTIVIQK 161


>gi|297154057|gb|ADI03769.1| Methyltransferase type 11 [Streptomyces bingchenggensis BCW-1]
          Length = 259

 Score = 43.6 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          +     G  V+++GAG G LT  L+ LGA +VI +E D      L+    +
Sbjct: 35 ALEPAPGPRVLDLGAGTGKLTATLVALGA-EVIAVEPDPGMLTELRRSLPE 84


>gi|254190456|ref|ZP_04896964.1| putative methyltransferase [Burkholderia pseudomallei Pasteur
           52237]
 gi|157938132|gb|EDO93802.1| putative methyltransferase [Burkholderia pseudomallei Pasteur
           52237]
          Length = 396

 Score = 43.6 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 209 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 268

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 269 EIVEAD--------LFPDGRAPLIVCNPPW 290


>gi|72162207|ref|YP_289864.1| methyltransferase [Thermobifida fusca YX]
 gi|71915939|gb|AAZ55841.1| putative methyltransferase [Thermobifida fusca YX]
          Length = 376

 Score = 43.6 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           E+    DG+ V+E+G G G    +L    G + V+ +E D       +   ++   R  +
Sbjct: 104 EALDVTDGVRVLEVGTGTGYNAALLCHRLGDQHVVTVEVDPVLAEQAQQRLAEVGYRPIV 163

Query: 100 IQDD 103
              D
Sbjct: 164 HVGD 167


>gi|53720695|ref|YP_109681.1| hypothetical protein BPSL3086 [Burkholderia pseudomallei K96243]
 gi|52211109|emb|CAH37097.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
          Length = 396

 Score = 43.6 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 209 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 268

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 269 EIVEAD--------LFPDGRAPLIVCNPPW 290


>gi|28493285|ref|NP_787446.1| protein-L-isoaspartate methyltransferase [Tropheryma whipplei str.
           Twist]
 gi|28572604|ref|NP_789384.1| hypothetical protein TW454 [Tropheryma whipplei TW08/27]
 gi|28410736|emb|CAD67122.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
 gi|28476326|gb|AAO44415.1| protein-L-isoaspartate methyltransferase [Tropheryma whipplei str.
           Twist]
          Length = 322

 Score = 43.6 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDIS 90
             +   I   +    G+ V+E G G G LT  LL   A    +   E+ ++F  + K   
Sbjct: 87  PQVCAFIIAVADIRPGLNVLEAGVGSGALTIWLLNALAGFGTLYSFEERREFLALAKRNV 146

Query: 91  SQH 93
           S  
Sbjct: 147 SDF 149


>gi|302534458|ref|ZP_07286800.1| protein-L-isoaspartate O-methyltransferase [Streptomyces sp. C]
 gi|302443353|gb|EFL15169.1| protein-L-isoaspartate O-methyltransferase [Streptomyces sp. C]
          Length = 326

 Score = 43.6 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ K+ ++    DG  V+EIGAG G    +L    G   V  ++ D++     +   +
Sbjct: 90  PSLMAKMLDALQVRDGDNVLEIGAGTGYNAALLCHRLGDGLVTTVDLDEEITESARSHLA 149

Query: 92  QHPNRLEIIQDD 103
           +   R  ++  D
Sbjct: 150 RLGYRPAVVTGD 161


>gi|254773254|ref|ZP_05214770.1| hypothetical protein MaviaA2_01031 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 190

 Score = 43.6 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G   +EIG G G     LL   A  +  +E D      L+     + +R  +IQ 
Sbjct: 35  GSRTLEIGPGYGATLSALLDRTA-SLTAVELDPVMADRLQRR---YGDRARVIQA 85


>gi|170783539|ref|YP_001742032.1| methyltransferase [Arthrobacter sp. AK-1]
 gi|150035026|gb|ABR67037.1| hypothetical methyltransferase [Arthrobacter sp. AK-1]
          Length = 210

 Score = 43.6 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           L G   +EIG G G  +Q++L    A  V  ++ D           +++ +R+ + Q  A
Sbjct: 36  LPGARALEIGCGTGYGSQLVLEQFCAASVDAVDLDPAMIERAARRLARYGDRVRLAQGSA 95

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
             +             +     + I   +     +              + +EV     A
Sbjct: 96  TDLRSALNAADDDYDAVFD---FGIVHHIPNWRAAIAEVSRVLAPGGRFYFEEVTAHALA 152

Query: 165 QKNSPHYGRL 174
           +     Y RL
Sbjct: 153 RP---IYQRL 159


>gi|301100972|ref|XP_002899575.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262103883|gb|EEY61935.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 199

 Score = 43.6 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           +  I   +    G T+++IG+G G   +   +     +K + +E D+    +     +  
Sbjct: 53  VNAILRVASLQPGETLVDIGSGDGRVVIEAAVQCPELKKALGVELDEALVKL--SRPTSL 110

Query: 94  PNRLEIIQDDALKVDFEK------FFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
             ++EI+  D +++D         FF     I  +  L    GTR++        W P
Sbjct: 111 REKVEIVHADFMEIDMRNADVVVLFFLPHKDISRMLQLKLRPGTRVVTYVFQIAQWKP 168


>gi|254519062|ref|ZP_05131118.1| methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226912811|gb|EEH98012.1| methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 267

 Score = 43.6 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPIL-KDISSQHPN 95
           ++ +  G  +   ++E+G GPG  T++LL   ++ +V  ++ D++       +++ ++ N
Sbjct: 17  RMLKLLGVKEDSDILEVGGGPGFFTKILLDNFSKCEVTSLDNDEKLLEYAYSNLNKEYGN 76

Query: 96  RLEIIQDDA 104
           R+  + DD 
Sbjct: 77  RVSFVVDDI 85


>gi|57234541|ref|YP_181422.1| hypothetical protein DET0680 [Dehalococcoides ethenogenes 195]
 gi|57234615|ref|YP_181388.1| hypothetical protein DET0646 [Dehalococcoides ethenogenes 195]
 gi|57224989|gb|AAW40046.1| conserved hypothetical protein [Dehalococcoides ethenogenes 195]
 gi|57225063|gb|AAW40120.1| conserved hypothetical protein [Dehalococcoides ethenogenes 195]
          Length = 280

 Score = 43.6 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            + IAE  G  DG  V + G GPG  T  L   GA  V  I+   +     ++ +S H  
Sbjct: 56  ARWIAEYFGLGDGKRVCDFGCGPGLYTSHLAAAGAD-VTGIDFSSRSIAYARESASAHNL 114

Query: 96  RLEIIQDDALKVDFEKFFNI 115
            +  I+ + L+    K F++
Sbjct: 115 DIHYIEQNYLEFAAPKKFDL 134


>gi|307703575|ref|ZP_07640517.1| methyltransferase domain protein [Streptococcus oralis ATCC 35037]
 gi|307622982|gb|EFO01977.1| methyltransferase domain protein [Streptococcus oralis ATCC 35037]
          Length = 193

 Score = 43.6 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +G+N  FL D  +  KK+ +             +G TV+++G G G L   L      + 
Sbjct: 21  LGENMTFLTDAGVFSKKMVDFGSQLLLKCLEVNEGETVLDVGCGYGPLGLSLAKAYGVQA 80

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++     I Q +  +    KF        +I+N P   G ++
Sbjct: 81  TMVDINNRALDLARQNAERNKVEATIFQSNIYEQIEGKF------DHVISNPPIRAGKQV 134

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 135 VHEIIEKSREFLKDGGDLTIVIQK 158


>gi|302595318|ref|YP_003829033.1| hypothetical protein pecB24_p38 [Escherichia coli]
 gi|302310054|gb|ADL13927.1| YdcA [Escherichia coli]
          Length = 204

 Score = 43.6 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 46  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 105

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L+D      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 106 YLRDNF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 145


>gi|256026232|ref|ZP_05440097.1| hypothetical protein E4_22876 [Escherichia sp. 4_1_40B]
          Length = 187

 Score = 43.6 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|291615369|ref|YP_003525526.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sideroxydans lithotrophicus ES-1]
 gi|291585481|gb|ADE13139.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sideroxydans lithotrophicus ES-1]
          Length = 214

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDISSQHPNRLEI 99
           ++        V+E+G G G LT  LL+  A  V  +E  Q+      + +++ H + + +
Sbjct: 69  QALELKLSDRVLEVGTGSGYLT-ALLSRMAAHVTSVELVQELSARAARTLAAHHYDNVTL 127

Query: 100 IQDDALKVDFEKFFN 114
              DA K    + ++
Sbjct: 128 EIGDASKGWGTEKYD 142


>gi|188991176|ref|YP_001903186.1| Putative methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732936|emb|CAP51132.1| Putative methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 266

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 9/124 (7%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103
           L G  V+++ AG G L    ++ GA   ++IE+D      L++  ++     +++++QDD
Sbjct: 114 LAGARVLDLFAGSGALGLEAVSRGAAHALLIERDPGLAQRLREHVARLGAAEQVQVLQDD 173

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIG--TRLLFNW---ISADTWPPFWESLTLLFQKEV 158
           AL+  + +         +  + P+  G    +L      ++AD W        L  Q   
Sbjct: 174 ALR--WLERAPTGQVDLVFVDPPFAAGLWAPVLERLSTHLAADAWLYLETPAELPPQVPP 231

Query: 159 GERI 162
           G  +
Sbjct: 232 GWHL 235


>gi|118463325|ref|YP_879489.1| hypothetical protein MAV_0196 [Mycobacterium avium 104]
 gi|118164612|gb|ABK65509.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 193

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G   +EIG G G     LL   A  +  +E D      L+     + +R  +IQ 
Sbjct: 38  GSRTLEIGPGYGATLSALLDRTA-SLTAVELDPVMADRLQRR---YGDRARVIQA 88


>gi|76810643|ref|YP_334983.1| methyltransferase small domain-containing protein [Burkholderia
           pseudomallei 1710b]
 gi|76580096|gb|ABA49571.1| Methyltransferase small domain family [Burkholderia pseudomallei
           1710b]
          Length = 425

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 238 VARAPLPSTSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 297

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 298 EIVEAD--------LFPDGRAPLIVCNPPW 319


>gi|323161460|gb|EFZ47361.1| hypothetical protein ECE128010_2312 [Escherichia coli E128010]
          Length = 185

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|262831401|sp|Q8A9H7|TRMN6_BACTN RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
          Length = 237

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IG G G +  ML         ++ +E D+      K+  ++ P  +R+E
Sbjct: 33  ASVQGAHRILDIGTGTGLVALMLAQRSLPDANIVALEIDEAAAGQAKENVARSPWKDRIE 92

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +++ D L       F++     I++N PY + +
Sbjct: 93  VVKQDFLFYQSPDKFDV-----IVSNPPYFVDS 120


>gi|311268958|ref|XP_003132283.1| PREDICTED: hemK methyltransferase family member 1-like [Sus scrofa]
          Length = 264

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS--QHPNRLE 98
           + G+  G  ++E+G G G ++  LL  L   +VI ++K +    +  + +   Q  +R+ 
Sbjct: 47  AVGAHGGPLILEVGCGSGAISLSLLSKLPESQVIAVDKGEAAICLTHENAQRLQLQDRIR 106

Query: 99  IIQDDA-LKVDFEKFFNISSPIRIIANLPY 127
           II  D  L+ ++           +I+N PY
Sbjct: 107 IIPLDVTLEQNWAHLLPWGPVDLVISNPPY 136


>gi|307728878|ref|YP_003906102.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1003]
 gi|307583413|gb|ADN56811.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1003]
          Length = 217

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L    +  ++ +        +V+EIGAG G +   LL   A+ V+ ++ + +   +
Sbjct: 57  GQHMLA-PRVEARVLQELAVKKHESVLEIGAGSGYM-AALLAHRAQHVLTVDIEPELAEL 114

Query: 86  LK-DISSQHPNRLEIIQDD 103
            K ++       +E+   D
Sbjct: 115 AKANLIGNGVLNVEVATGD 133


>gi|269216760|ref|ZP_06160614.1| methlytransferase, UbiE/COQ5 family [Slackia exigua ATCC 700122]
 gi|269129848|gb|EEZ60931.1| methlytransferase, UbiE/COQ5 family [Slackia exigua ATCC 700122]
          Length = 197

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             +        VI+ G G G +    LT GAR+V+ ++  ++     +   +     +  
Sbjct: 32  VAALADCADGRVIDAGCGTGTMVAHCLTAGAREVVGVDVAEEMVARARKRFAD-ETHVRF 90

Query: 100 IQDDALKVDFEKFFN 114
           I  D   V  E+ F+
Sbjct: 91  IACDICDVADEEGFD 105


>gi|148378471|ref|YP_001253012.1| AraC family transcription regulator [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932551|ref|YP_001382860.1| methlytransferase-like protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153934779|ref|YP_001386426.1| methlytransferase-like protein [Clostridium botulinum A str. Hall]
 gi|148287955|emb|CAL82021.1| putative AraC-family transcriptional regulator [Clostridium
           botulinum A str. ATCC 3502]
 gi|152928595|gb|ABS34095.1| putative methlytransferase [Clostridium botulinum A str. ATCC
           19397]
 gi|152930693|gb|ABS36192.1| putative methlytransferase [Clostridium botulinum A str. Hall]
          Length = 196

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++ I   +   +G  V++IG+G G L   L  +      +  I+  +    + K+     
Sbjct: 25  IEYILSKANLKEGDRVLDIGSGTGVLIPYLENIISNNGDIAAIDIAENMLKVSKE--KNK 82

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
            + L+ I  D L+   +K FN
Sbjct: 83  YSNLKFIVGDFLEYKSKKTFN 103


>gi|116627670|ref|YP_820289.1| hypothetical protein STER_0852 [Streptococcus thermophilus LMD-9]
 gi|116100947|gb|ABJ66093.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus thermophilus
           LMD-9]
 gi|312278193|gb|ADQ62850.1| Methyltransferase small domain protein [Streptococcus thermophilus
           ND03]
          Length = 196

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 25/166 (15%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQ--NFLLDLNI-LKKIAE--------SSGSLDGITV 51
           M + +H +  +           +GQ  +F  D  +  KK+ +        +     G  +
Sbjct: 9   MPDAAHDIHDLNVAL-------LGQGFHFYTDAGVFSKKMVDYGSQVLLNALDLERGKNL 61

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           +++G G G L   L  +   +  +I+ + +   + K  + ++     I Q +  +   EK
Sbjct: 62  LDVGCGYGPLGISLAKVQGVQSTMIDINSRAIDLAKKNAERNGVVAHIFQSNIYENVSEK 121

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQK 156
           F        II+N P   G +++   I           SLT++ QK
Sbjct: 122 F------DYIISNPPIRAGKKVVHEIIEGAFDHLNQGGSLTIVIQK 161


>gi|302541207|ref|ZP_07293549.1| putative methyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458825|gb|EFL21918.1| putative methyltransferase [Streptomyces himastatinicus ATCC 53653]
          Length = 388

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
            G   G  V +IGAG G         GA  VI +++D+      + ++ +   +L+++  
Sbjct: 237 LGPRVGDLVWDIGAGSGAAAVETAGFGA-AVIAVDRDRDACERAETLARRFGVQLQVVHG 295

Query: 103 ---DALK 106
              D L+
Sbjct: 296 AAPDVLE 302


>gi|302595383|ref|YP_003829245.1| hypothetical protein pECL46p051 [Escherichia coli]
 gi|302595502|ref|YP_003829120.1| hypothetical protein pECL8_p040 [Escherichia coli]
 gi|302310143|gb|ADL14014.1| unknown [Escherichia coli]
 gi|302310271|gb|ADL14139.1| unknown [Escherichia coli]
          Length = 180

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|300689993|ref|YP_003750988.1| methyltransferase, methylase of polypeptide chain release factors
           [Ralstonia solanacearum PSI07]
 gi|299077053|emb|CBJ49669.1| putative methyltransferase, Methylase of polypeptide chain release
           factors [Ralstonia solanacearum PSI07]
          Length = 420

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L   G ++V+  ++D +     ++  ++    +++
Sbjct: 234 VAKAPLPSQALAFDIGTGTGVLAAVLAKRGVKRVVGTDQDARALACARENLTRLGLQSQV 293

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+I+ D         F       I+ N P+
Sbjct: 294 EVIEAD--------LFPEGRAPLIVCNPPW 315


>gi|229014969|ref|ZP_04172050.1| hypothetical protein bmyco0001_53470 [Bacillus mycoides DSM 2048]
 gi|228746319|gb|EEL96241.1| hypothetical protein bmyco0001_53470 [Bacillus mycoides DSM 2048]
          Length = 195

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 11/110 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + +K+ E+    +   +IE G G G  T+ LL        ++++E +++F+ +LK+   +
Sbjct: 27  LAEKMMENINFENAKYIIEYGPGTGVFTEKLLKKRNSNTTLMLVENNREFYLMLKEKFKK 86

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIR-------IIANLPYNIGTRLLF 135
             N L I+   A  +D E   N S P           A+LP N+   +L 
Sbjct: 87  EKN-LFIVWGSAENID-EYLKNFSIPYADYIVSGLPFASLPQNVSDEILL 134


>gi|241518600|ref|YP_002979228.1| protein-L-isoaspartate O-methyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240863013|gb|ACS60677.1| protein-L-isoaspartate O-methyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 657

 Score = 43.6 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++AE++       V+EIG G G    +L  L A +V  +E+  +     +    Q
Sbjct: 64  PFIVARMAEAAEIEPSDRVLEIGTGSGYAAAILAEL-ASEVFTMERHGELASEAERRLHQ 122

Query: 93  H-PNRLEIIQDD 103
              + + +   D
Sbjct: 123 SGYSNVTVKAGD 134


>gi|324005337|gb|EGB74556.1| hypothetical protein HMPREF9532_05030 [Escherichia coli MS 57-2]
          Length = 181

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQH 93
           I  ++   +   +   ++E  AG G + + +       +   +E +      L++     
Sbjct: 32  ICDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVRYLRENF--- 88

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  -NGVRVQCGDFMEWQSVQYYS-----RIIMNPPFSHGQDI 122


>gi|323176677|gb|EFZ62267.1| modification methylase BsuBI [Escherichia coli 1180]
          Length = 489

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 21  PKKY---MGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTL------- 68
            +K+    GQ F+    + + +A            +++ GAG G L+   L         
Sbjct: 20  ARKHKAEFGQ-FMTPSGVARFMASLFPPSTMKTCRLLDAGAGLGALSCAFLDRWLIGEFG 78

Query: 69  -GARKVIVIEKDQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANL 125
             + +    E D++    L    + +  R+   II+ D +++   +          I N 
Sbjct: 79  FESVEATAYEIDKKLCGHLAKHLTGY-RRVTPRIIEGDYIELATAEGLQDRGYTHAILNP 137

Query: 126 PY 127
           PY
Sbjct: 138 PY 139


>gi|187927743|ref|YP_001898230.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           pickettii 12J]
 gi|187724633|gb|ACD25798.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           pickettii 12J]
          Length = 216

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  ++ +         V+E+GAG G +  +L   G R+V  ++   +    
Sbjct: 57  GQNMLA-PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RQVTTLDIVPELVAF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +D  S++    +++++    +   +  +++   I +  ++P
Sbjct: 115 ARDNLSRNSVTNVDVVEASGAQGWGDGLYDV---ICVSGSVP 153


>gi|126652161|ref|ZP_01724343.1| hypothetical protein BB14905_10835 [Bacillus sp. B14905]
 gi|126591069|gb|EAZ85180.1| hypothetical protein BB14905_10835 [Bacillus sp. B14905]
          Length = 278

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            +K MGQ    D     +I +          +V+EIG G GN T  L      K+  ++ 
Sbjct: 45  ARKNMGQ---TDPYAT-RIFQELQKSIEPQHSVLEIGPGWGNYTFPLADR-VNKLTCVDS 99

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA-NLPYNI 129
            Q     L+     H   +  +     K +  +   I     ++  N  Y +
Sbjct: 100 SQSMLQYLQQCM-PHQEHVSYVHA---KWERLEKDEIEPHDIVLGVNCFYRM 147


>gi|29346248|ref|NP_809751.1| putative RNA methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338143|gb|AAO75945.1| putative RNA methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 241

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IG G G +  ML         ++ +E D+      K+  ++ P  +R+E
Sbjct: 37  ASVQGAHRILDIGTGTGLVALMLAQRSLPDANIVALEIDEAAAGQAKENVARSPWKDRIE 96

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +++ D L       F++     I++N PY + +
Sbjct: 97  VVKQDFLFYQSPDKFDV-----IVSNPPYFVDS 124


>gi|9507589|ref|NP_052920.1| hypothetical protein R100p040 [Plasmid R100]
 gi|41056960|ref|NP_957580.1| YdcA [Escherichia coli]
 gi|91206334|ref|YP_538688.1| hypothetical protein UTI89_P089 [Escherichia coli UTI89]
 gi|133756483|ref|YP_001096439.1| hypothetical protein NR1_p043 [Escherichia coli]
 gi|191173613|ref|ZP_03035138.1| conserved hypothetical protein [Escherichia coli F11]
 gi|218692911|ref|YP_002406023.1| putative adenine-specific DNA methylase [Escherichia coli UMN026]
 gi|219586066|ref|YP_002456160.1| hypothetical protein pO26I_p019 [Escherichia coli]
 gi|256367680|ref|YP_003108249.1| YdcA [Escherichia coli]
 gi|256855321|ref|YP_003162565.1| hypothetical protein pEC14_72 [Escherichia coli]
 gi|293404625|ref|ZP_06648618.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|300900752|ref|ZP_07118900.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|5103188|dbj|BAA78824.1| ydcA [Plasmid R100]
 gi|38606097|gb|AAR25061.1| YdcA [Escherichia coli]
 gi|89033308|gb|ABD59986.1| hypothetical protein [Escherichia coli]
 gi|91075785|gb|ABE10665.1| hypothetical protein UTI89_P089 [Escherichia coli UTI89]
 gi|190906093|gb|EDV65707.1| conserved hypothetical protein [Escherichia coli F11]
 gi|218350074|emb|CAQ87491.1| putative adenine-specific DNA methylase [Escherichia coli UMN026]
 gi|218931649|gb|ACL12422.1| hypothetical protein [Escherichia coli]
 gi|228480617|gb|ACQ41945.1| YdcA [Escherichia coli]
 gi|256275533|gb|ACU68806.1| conserved hypothetical protein [Escherichia coli]
 gi|281181695|dbj|BAI58024.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|291428337|gb|EFF01363.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|300355762|gb|EFJ71632.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|307629834|gb|ADN74137.1| hypothetical protein UM146_24306 [Escherichia coli UM146]
 gi|315290637|gb|EFU50010.1| conserved hypothetical protein [Escherichia coli MS 153-1]
 gi|323954236|gb|EGB50024.1| hypothetical protein ERLG_04511 [Escherichia coli H263]
 gi|323959021|gb|EGB54691.1| hypothetical protein ERGG_04467 [Escherichia coli H489]
 gi|324010351|gb|EGB79570.1| hypothetical protein HMPREF9533_05669 [Escherichia coli MS 60-1]
          Length = 187

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQH 93
           I  ++   +   +   ++E  AG G + + +       +   +E +      L++     
Sbjct: 38  ICDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVRYLRENF--- 94

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            N + +   D ++    ++++     RII N P++ G  +
Sbjct: 95  -NGVRVQCGDFMEWQSVQYYS-----RIIMNPPFSHGQDI 128


>gi|283852359|ref|ZP_06369629.1| Methyltransferase type 12 [Desulfovibrio sp. FW1012B]
 gi|283572207|gb|EFC20197.1| Methyltransferase type 12 [Desulfovibrio sp. FW1012B]
          Length = 557

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 15/100 (15%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           HY + P++           +L  I        G  ++E+GAG G LT  L TL    V  
Sbjct: 50  HYHLTPRRKT---------LLSWI----DFGPGGRILELGAGCGALTAHLATL-PHAVTA 95

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI 115
           +E   +   I++       N LEI+  +A+ + +++ F++
Sbjct: 96  VEGSPERAAIIRARCRSARN-LEIVAANAVGLPYDRSFDV 134


>gi|323454532|gb|EGB10402.1| hypothetical protein AURANDRAFT_22815 [Aureococcus anophagefferens]
          Length = 367

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 19/142 (13%)

Query: 27  QNFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           QN L D        + I  ++  L G  V+++GAG G L+      GA +V  +E     
Sbjct: 26  QNMLQDAVRTETYRRAIVTNAPDLTGKVVLDVGAGTGILSFFAAQAGAGRVYAVEA-SGM 84

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
                 + S           DA+  DF         + ++     ++      + I ++ 
Sbjct: 85  AEKAAKLLSADAAW------DAMDKDFR--------VHVVKGKVEDVTIPEHVDVIVSEP 130

Query: 143 WPPFWESLTLLFQKEVGERITA 164
              F     LL  + + E   A
Sbjct: 131 LGAFVRVRFLLVHERMLEAFVA 152


>gi|254454411|ref|ZP_05067848.1| protein-L-isoaspartate O-methyltransferase [Octadecabacter
           antarcticus 238]
 gi|198268817|gb|EDY93087.1| protein-L-isoaspartate O-methyltransferase [Octadecabacter
           antarcticus 238]
          Length = 207

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL+   L K+ E++       V+++G G G  T +L  L A  V+ +E +       +  
Sbjct: 51  LLEARTLAKMLEAADVQPSDVVLDLGCGLGYSTAVLAQL-ADFVVAVEDEPGRAQEAQQN 109

Query: 90  SSQH 93
            S H
Sbjct: 110 LSDH 113


>gi|158424442|ref|YP_001525734.1| putative methyltransferase transmembrane protein [Azorhizobium
           caulinodans ORS 571]
 gi|158331331|dbj|BAF88816.1| putative methyltransferase transmembrane protein [Azorhizobium
           caulinodans ORS 571]
          Length = 223

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +L++  +L K+ + +       V+++ AG G  +  +L   +++V+ +E D         
Sbjct: 66  YLIEPMVLAKLIQLADVQADEIVLDVAAGTGY-SAAVLARLSQQVVALEDDADLVAAANA 124

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           + S+    L I     LK      +    P  +I
Sbjct: 125 VLSE----LAITNVAVLKGPLTAGWAAEGPYDVI 154


>gi|305662907|ref|YP_003859195.1| Histone methylation DOT1 family protein [Ignisphaera aggregans DSM
           17230]
 gi|304377476|gb|ADM27315.1| Histone methylation DOT1 family protein [Ignisphaera aggregans DSM
           17230]
          Length = 177

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L  I   +         ++G G G +       G +K + +E +       K+ +  
Sbjct: 30  EELLDIIMRLANIRPDDIFYDLGCGDGRIVVKAAKEGVKKAVCVEINPSLIEKAKEYARN 89

Query: 93  HP--NRLEIIQDDALKVDFEK 111
               +R+E +  D  K     
Sbjct: 90  ENVIDRIEFVNMDFFKAPISD 110


>gi|289193008|ref|YP_003458949.1| ribosomal L11 methyltransferase [Methanocaldococcus sp. FS406-22]
 gi|288939458|gb|ADC70213.1| ribosomal L11 methyltransferase [Methanocaldococcus sp. FS406-22]
          Length = 209

 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 19/188 (10%)

Query: 31  LDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +D  +   I   +        VI++G G G L      LGA++ I I+ D++     K+ 
Sbjct: 29  IDGKLASDILFFAVNDFYNNVVIDLGCGTGRLAIGSKLLGAKRAIGIDIDRESIEAAKEN 88

Query: 90  SSQHPNRLEIIQDDALKVDFEKF-----FNISSPIRIIANLPYNIGTRLLFNWI--SADT 142
           + +    ++    D   VD E        +      +I N P+    +         A  
Sbjct: 89  AKKLNVDVDFYCMDVRDVDDEFLNKVLGEDRDLKRVVIQNPPFGAQKKHADRLFLDKALE 148

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF-PSPKV 201
                 ++     K+   +    K     G+++ +          F I     F     V
Sbjct: 149 IGDVIYTIHNYPTKDFVMKYVEDKG----GKITHIYEAF------FRIPAIYEFHKKRAV 198

Query: 202 TSTVIHFI 209
              V+ F 
Sbjct: 199 DVPVVVFR 206


>gi|315300797|gb|EFU60022.1| conserved hypothetical protein [Escherichia coli MS 16-3]
          Length = 187

 Score = 43.6 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|134103237|ref|YP_001108898.1| adenine dimethylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915860|emb|CAM05973.1| adenine dimethylase [Saccharopolyspora erythraea NRRL 2338]
          Length = 201

 Score = 43.6 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 48  GITVIEIGAGPGNLTQML---LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              V+E+G G G+L+  +   L  GAR  I IE        L++    H   +E++  DA
Sbjct: 48  EPVVLELGPGTGSLSNGIHDRLPTGARH-IGIELGADMVEHLRE----HKPWMEVVHGDA 102

Query: 105 LK-VDFEKFFNISSPIRIIANLPYNI 129
              +       I     +++++P+++
Sbjct: 103 GDLLSILDQRGIGKVDAVVSSIPWSL 128


>gi|116750693|ref|YP_847380.1| type 11 methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116699757|gb|ABK18945.1| Methyltransferase type 11 [Syntrophobacter fumaroxidans MPOB]
          Length = 202

 Score = 43.6 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 52/140 (37%), Gaps = 4/140 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKD-ISSQH 93
           ++++ ++     G  V+EIG G G    ++L       V  ++ D++     +  +S   
Sbjct: 24  IRRLRKAGVLEPGARVLEIGCGRGAGADLILDAFQPEMVFAMDLDERMIRKARTYLSPAR 83

Query: 94  PNRLEIIQDDALKVDFEK-FFNISSPIRIIANLP-YNIGTRLLFNWISADTWPPFWESLT 151
            +R+ +   DA+ +       +      ++ ++P +  G   +   +         E   
Sbjct: 84  RSRVAMYAGDAVDLPHRNGSMDAVFGFGVLHHIPDWQRGLAEVARVLRPGGVYFLEEIYP 143

Query: 152 LLFQKEVGERITAQKNSPHY 171
            L+Q  V + I        +
Sbjct: 144 FLYQNPVTKHILLHPAGNRF 163


>gi|300790144|ref|YP_003770435.1| hypothetical protein AMED_8336 [Amycolatopsis mediterranei U32]
 gi|299799658|gb|ADJ50033.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 371

 Score = 43.6 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             ++         +IG G G L  +LL  G   V+  + DQ+     +D   +    +R+
Sbjct: 184 VAAAPLPSSRLAFDIGTGSGVLAAVLLARGVDSVVATDLDQRALDCARDNLDRLGFADRV 243

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             ++ D         F       ++ N P+
Sbjct: 244 RFVRTD--------LFPPGEAPLVVCNPPW 265


>gi|290580442|ref|YP_003484834.1| hypothetical protein SmuNN2025_0916 [Streptococcus mutans NN2025]
 gi|254997341|dbj|BAH87942.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 198

 Score = 43.6 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 25/164 (15%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQ--NFLLDLNILKK---------IAESSGSLDGITVIE 53
           +  H ++ I           +GQ  +FL D  +  K         +  S    +G T+++
Sbjct: 11  DSKHDIRKIKVEL-------LGQSFHFLTDSGVFSKNMIDYGSQTLLNSLDFAEGKTLLD 63

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
           +G G G L   L  +    V +++ + +   + +  +  +     I Q D  +  F+ F 
Sbjct: 64  LGCGYGPLGIALAKVQKLDVTMVDINNRALDLTRQNAENNEVSANIFQSDIYENVFDSF- 122

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQK 156
                  II+N P   G +++   I           SLT++ QK
Sbjct: 123 -----DYIISNPPIRAGKKVVHTIIEGSINHLKENGSLTIVIQK 161


>gi|255102366|ref|ZP_05331343.1| putative methyltransferase [Clostridium difficile QCD-63q42]
          Length = 248

 Score = 43.6 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           ++ I +S G      ++E+  G GNLT  L       +  I+   +   + ++ + +   
Sbjct: 27  IEDIIDSEGV-KVKNILELACGTGNLTIPLAKKNYD-IAGIDISDEMLSVAREKAEKEGV 84

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            L ++Q D  ++DFE   +    +    +    I        + + T+    +    +F 
Sbjct: 85  ELVLLQQDISELDFE--ISDLDCVLCACDGFNYITYDDDLENVFSKTYELLKKDGIFIFD 142

Query: 156 KEVGERITAQKNSPHYG----RLSVLTGWRTK 183
                ++     +  YG     ++ +      
Sbjct: 143 ISSFYKLANILGNNMYGENREDIAYMWQNYFD 174


>gi|15921379|ref|NP_377048.1| L-isoaspartate O-methyltransferase [Sulfolobus tokodaii str. 7]
 gi|15622165|dbj|BAB66157.1| 231aa long hypothetical protein-L-isoaspartate O-methyltransferase
           [Sulfolobus tokodaii str. 7]
          Length = 231

 Score = 43.6 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +      G  V+EIG G G  T ++  +   KV+ +E +++ +     + S + N +++I
Sbjct: 64  DELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLS-YYNNIKLI 121

Query: 101 QDD 103
             D
Sbjct: 122 LGD 124


>gi|326793790|ref|YP_004311610.1| Cyclopropane-fatty-acyl-phospholipid synthase [Marinomonas
           mediterranea MMB-1]
 gi|326544554|gb|ADZ89774.1| Cyclopropane-fatty-acyl-phospholipid synthase [Marinomonas
           mediterranea MMB-1]
          Length = 416

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 30  LLDLNI--LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           L D ++  L +I +         ++EIG G G +          KV      ++ +   +
Sbjct: 174 LHDASVHKLDRICQKLELKPDDHLLEIGTGWGGMAIHAAQHYGCKVTTTTISKEQYDYAR 233

Query: 88  DISSQHP--NRLEIIQDD 103
           +        +R+ ++ +D
Sbjct: 234 EKVEALGLCDRVTLLLED 251


>gi|121534279|ref|ZP_01666103.1| Methyltransferase type 11 [Thermosinus carboxydivorans Nor1]
 gi|121307049|gb|EAX47967.1| Methyltransferase type 11 [Thermosinus carboxydivorans Nor1]
          Length = 229

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I + +     + V ++G G G  T      GAR V+ I+   +   I  + +    NR+ 
Sbjct: 31  IFDLAEVQQDMYVADVGCGTGIYTNEFCAAGAR-VVGIDISPEMLAIAAEKNKTWGNRVS 89

Query: 99  IIQDDALKVDFEK 111
            +  DA  + F  
Sbjct: 90  FVTADAAALPFPD 102


>gi|315274297|gb|ADU03705.1| modification methylase BsuBI [Enterobacteria phage VT2phi_272]
 gi|326340129|gb|EGD63933.1| Modification methylase PstI [Escherichia coli O157:H7 str. 1125]
          Length = 489

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 21  PKKY---MGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTL------- 68
            +K+    GQ F+    + + +A            +++ GAG G L+   L         
Sbjct: 20  ARKHKAEFGQ-FMTPSGVARFMASLFPPSTMKTCRLLDAGAGLGALSCAFLDRWLVGEFG 78

Query: 69  -GARKVIVIEKDQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANL 125
             + +    E D++    L    + +  R+   II+ D +++   +          I N 
Sbjct: 79  FESVEATAYEIDKKLCGHLAKHLTGY-RRVTPRIIEGDYIELATAEGLQDRGYTHAILNP 137

Query: 126 PY 127
           PY
Sbjct: 138 PY 139


>gi|84488917|ref|YP_447149.1| CbiT [Methanosphaera stadtmanae DSM 3091]
 gi|84372236|gb|ABC56506.1| CbiT [Methanosphaera stadtmanae DSM 3091]
          Length = 191

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRL 97
                  D   V+++G G G LT       A+K+  I+ +       +    +    N++
Sbjct: 30  ISKVKLTDEDVVVDVGCGTGGLTLEFAKR-AKKIYSIDMNPDAIKTTRANLEKFGLQNKV 88

Query: 98  EIIQDDALK 106
           E+I+D+ LK
Sbjct: 89  ELIEDEGLK 97


>gi|15616336|ref|NP_244641.1| protoporphyrinogen oxidase [Bacillus halodurans C-125]
 gi|10176398|dbj|BAB07493.1| protoporphyrinogen oxidase [Bacillus halodurans C-125]
          Length = 289

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQH 93
           +LK+I       + IT+++IG G G +   L L      V  ++  +    +  D + + 
Sbjct: 102 VLKEIRRQFKKEEEITILDIGTGSGAIAVTLALEEERTNVTAVDISRDALQVAADNARRL 161

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
              +++I  D      E F        +I + P  I T
Sbjct: 162 GANVQLIHGDL----GEPFLKTGERFDVIVSNPPYIPT 195


>gi|320102812|ref|YP_004178403.1| methyltransferase [Isosphaera pallida ATCC 43644]
 gi|319750094|gb|ADV61854.1| methyltransferase [Isosphaera pallida ATCC 43644]
          Length = 209

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
             ++G T I++ AG G +    L+ GA + +++E D++   ++K   +  ++ +R+E+I 
Sbjct: 40  ELVEGATAIDLFAGTGAMGLEALSRGASRAVLVEHDRETVQVIKRNLAHVRYEDRVEVIA 99

Query: 102 DDALKVDFEKFFNIS-SPIRIIANLPY 127
            DA +      F     P+ +  + PY
Sbjct: 100 GDAYRHARGLRFQPGDPPVILFLDPPY 126


>gi|189191322|ref|XP_001932000.1| histone-arginine methyltransferase CARM1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187973606|gb|EDU41105.1| histone-arginine methyltransferase CARM1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 507

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNR 96
           I +++    G TV+++G G G L+      GA+KV  ++         K+I ++  + +R
Sbjct: 185 IEKNAEVFAGKTVLDVGCGTGILSLFCARAGAKKVFAVDN-SGIVTRAKEIIAKNGYKDR 243

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIA 123
           +E+IQ      + E+         II+
Sbjct: 244 IEVIQGRVEDFNTERLIGKEKVDIIIS 270


>gi|124028046|ref|YP_001013366.1| hypothetical protein Hbut_1187 [Hyperthermus butylicus DSM 5456]
 gi|123978740|gb|ABM81021.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 207

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH 93
           +++ +        G  V +IG G G +   + +     +V  +E  +      + ++ + 
Sbjct: 23  VIEYLVTVLRPKPGDVVYDIGCGDGRVAVTIASKFPHVRVRCVELRRDLVERARKLAEEQ 82

Query: 94  PNR--LEIIQDDALKVD 108
             R  ++I++ D  KVD
Sbjct: 83  GVRGLVDIVEADFFKVD 99


>gi|86741930|ref|YP_482330.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. CcI3]
 gi|86568792|gb|ABD12601.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. CcI3]
          Length = 355

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91
             ++ ++ +     DG+ V+EIG G G    +L       +V  IE D       +   +
Sbjct: 73  PWVMARMLDLLDVRDGMNVLEIGTGTGYNAALLAERTPTGQVTTIEIDPGIAGHARAALA 132

Query: 92  QHPNRLEIIQDD 103
           +    + ++  D
Sbjct: 133 RIGRPVTVVVGD 144


>gi|32470101|ref|NP_863044.1| hypothetical protein p165897_132 [Escherichia coli]
 gi|58383255|ref|YP_194825.1| hypothetical protein pU302L_018 [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|116006861|ref|YP_788044.1| hypothetical protein pO86A1_p078 [Escherichia coli]
 gi|170650791|ref|YP_001739946.1| hypothetical protein EcSMS35_A0058 [Escherichia coli SMS-3-5]
 gi|301029134|ref|ZP_07192264.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|301328066|ref|ZP_07221217.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|307139312|ref|ZP_07498668.1| hypothetical protein EcolH7_14454 [Escherichia coli H736]
 gi|310286499|ref|YP_003937760.1| adenine-specific DNA methylase [Escherichia coli]
 gi|331643307|ref|ZP_08344439.1| conserved hypothetical protein [Escherichia coli H736]
 gi|28629358|gb|AAO49638.1| putative protein [Escherichia coli]
 gi|37962734|gb|AAR05681.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|115500716|dbj|BAF33947.1| hypothetical protein [Escherichia coli]
 gi|170522067|gb|ACB20244.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
 gi|299877930|gb|EFI86141.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|300845443|gb|EFK73203.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|308826828|emb|CBX36101.1| putative adenine-specific DNA methylase [Escherichia coli]
 gi|325495794|gb|EGC93655.1| hypothetical protein ECD227_4283 [Escherichia fergusonii ECD227]
 gi|327536657|gb|AEA95489.1| hypothetical protein pSD853_88_25 [Salmonella enterica subsp.
           enterica serovar Dublin]
 gi|330907836|gb|EGH36361.1| hypothetical protein ECAA86_04770 [Escherichia coli AA86]
 gi|331037534|gb|EGI09757.1| conserved hypothetical protein [Escherichia coli H736]
          Length = 187

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|257076878|ref|ZP_05571239.1| protein-L-isoaspartate O-methyltransferase [Ferroplasma acidarmanus
           fer1]
          Length = 246

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH--P 94
           I  ++G L G  ++E GAG G+L+  +L       K++ ++ ++    I +    +   P
Sbjct: 77  IIHAAGILPGTCILEAGAGTGSLSYSILKAIGSKGKLVTMDINKSTIDIARGNVERFMLP 136

Query: 95  NRLEIIQDDALKVDFE-----KFFNISSPIRIIANLPYNI 129
           +  E I  D    +          +I  P   + N+  +I
Sbjct: 137 DNWETIHGDIRSDNLPGKYDAAILDIPDPWDAVENMKKHI 176


>gi|10955313|ref|NP_052654.1| hypothetical protein pO157p47 [Escherichia coli O157:H7 str. Sakai]
 gi|75994528|ref|YP_325642.1| hypothetical protein L7082 [Escherichia coli O157:H7 EDL933]
 gi|149930825|ref|YP_001294725.1| w0061 [Escherichia coli]
 gi|168752307|ref|ZP_02777329.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758960|ref|ZP_02783967.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763068|ref|ZP_02788075.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769260|ref|ZP_02794267.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777509|ref|ZP_02802516.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168784343|ref|ZP_02809350.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790142|ref|ZP_02815149.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168801263|ref|ZP_02826270.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|195939993|ref|ZP_03085375.1| hypothetical protein EscherichcoliO157_26962 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208811307|ref|ZP_03253067.1| hypothetical protein ECH7EC4206_C0101 [Escherichia coli O157:H7
           str. EC4206]
 gi|208817368|ref|ZP_03258397.1| hypothetical protein ECH7EC4045_B0023 [Escherichia coli O157:H7
           str. EC4045]
 gi|208823345|ref|ZP_03263662.1| hypothetical protein ECH74042_B0014 [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395595|ref|YP_002268444.1| hypothetical protein ECH74115_B0063 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329924|ref|ZP_03445999.1| hypothetical protein ESCCO14588_A0109 [Escherichia coli O157:H7
           str. TW14588]
 gi|254667505|ref|YP_003082191.1| hypothetical protein ECSP_6057 [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225676|ref|ZP_05939957.1| hypothetical protein EscherichiacoliO157_13887 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257868|ref|ZP_05950401.1| hypothetical protein EscherichiacoliO157EcO_18933 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|37695813|gb|AAR00475.1|AF401292_78 w0061 [Escherichia coli]
 gi|3337045|dbj|BAA31804.1| unnamed protein product [Escherichia coli O157:H7 str. Sakai]
 gi|3822196|gb|AAC70150.1| unknown [Escherichia coli O157:H7]
 gi|187767267|gb|EDU31111.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013819|gb|EDU51941.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188998473|gb|EDU67469.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354336|gb|EDU72755.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361604|gb|EDU80023.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366714|gb|EDU85130.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370316|gb|EDU88732.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189376556|gb|EDU94972.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|208729937|gb|EDZ79154.1| hypothetical protein ECH7EC4206_C0101 [Escherichia coli O157:H7
           str. EC4206]
 gi|208730545|gb|EDZ79244.1| hypothetical protein ECH7EC4045_B0023 [Escherichia coli O157:H7
           str. EC4045]
 gi|208736940|gb|EDZ84625.1| hypothetical protein ECH74042_B0014 [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157050|gb|ACI34484.1| hypothetical protein ECH74115_B0063 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217317155|gb|EEC25588.1| hypothetical protein ESCCO14588_A0109 [Escherichia coli O157:H7
           str. TW14588]
 gi|254595857|gb|ACT75217.1| hypothetical protein ECSP_6057 [Escherichia coli O157:H7 str.
           TW14359]
 gi|320188681|gb|EFW63342.1| hypothetical protein ECoD_04743 [Escherichia coli O157:H7 str.
           EC1212]
 gi|326337206|gb|EGD61042.1| hypothetical protein ECF_05670 [Escherichia coli O157:H7 str. 1125]
 gi|326347703|gb|EGD71421.1| hypothetical protein ECoA_00482 [Escherichia coli O157:H7 str.
           1044]
          Length = 187

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RVIINPPFSHGQDI 128


>gi|315179955|gb|ADT86869.1| transcriptional regulator, MerR family [Vibrio furnissii NCTC
          11218]
          Length = 246

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          +       ++EIG G G  T++L    A  +  ++ D+     LK+  + HP
Sbjct: 35 AVPRHDGNLLEIGCGKGPTTRLLAQHTAFDITALDNDEYSLSCLKETVAGHP 86


>gi|294628395|ref|ZP_06706955.1| methyltransferase [Streptomyces sp. e14]
 gi|292831728|gb|EFF90077.1| methyltransferase [Streptomyces sp. e14]
          Length = 426

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
            G   G  V +IG G G  T      GA  VI ++ D       +  +     +  ++  
Sbjct: 246 LGPRVGDLVWDIGCGSGAFTAEAARSGA-AVIAVDHDPDACARTEAAARSFGVQAHVVLG 304

Query: 103 DA 104
           DA
Sbjct: 305 DA 306


>gi|20089046|ref|NP_615121.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
 gi|19913904|gb|AAM03601.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
          Length = 233

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 12  TILSHYKIIPKKYMGQNFLLD-LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
             ++ Y +       QN L +  N   +I E         V+EIG G G L   +     
Sbjct: 23  EEVNTYDLRM-----QN-LRNIENESNRIRELLKLKKSDVVLEIGTGTGELALNISAHC- 75

Query: 71  RKVIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLP 126
           ++VI I+  +      +  + SQ+   ++      L   + ++ F++      + +LP
Sbjct: 76  KQVIAIDVSKMMINFARRKAESQNKTNIQFYNAGFLTYENHDELFDVIVTQLALHHLP 133


>gi|325293105|ref|YP_004278969.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium sp.
           H13-3]
 gi|325060958|gb|ADY64649.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium sp.
           H13-3]
          Length = 223

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-P 94
           L K+ + +       V+E+G G G  T  +L+  A  V+ +E D+       +  +    
Sbjct: 73  LAKLLQLAAVTKEDVVLEVGGGAGY-TAAILSQLAGSVVSLECDETLAVEATETLASLGY 131

Query: 95  NRLEIIQDD 103
           + + ++  D
Sbjct: 132 DNVAVVTGD 140


>gi|325982050|ref|YP_004294452.1| ribosomal RNA adenine methylase transferase [Nitrosomonas sp.
           AL212]
 gi|325531569|gb|ADZ26290.1| ribosomal RNA adenine methylase transferase [Nitrosomonas sp.
           AL212]
          Length = 321

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 13/103 (12%)

Query: 25  MGQ--------NFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           +GQ        N L D   +K   E+       G  V+E+G G G  +       A KV 
Sbjct: 10  LGQFIPLHYHHNMLNDTIRMKGFKEAINLVVKPGAKVLELGGGTGVQS-FFAAQKAEKVF 68

Query: 75  VIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEKFFNI 115
            +E++ +     +D  +Q+ N  ++E+IQ DAL     +  ++
Sbjct: 69  CVERNPELVRAARDFLAQNINGDKVEVIQADALYYLPPEPVDV 111


>gi|196231392|ref|ZP_03130251.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
 gi|196224728|gb|EDY19239.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
          Length = 207

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ 92
           ++++++          + E G G G  T+ ++       +VI+ E D +F   L+D    
Sbjct: 26  LIRRVSAKMDFSQPRVIAEYGPGEGCHTREIVRRMHPDSRVILFELDPEFAQHLEDQFRG 85

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIR--IIANLPYNIGTR 132
             +R+ ++  DA  +  ++           I++ +P++I   
Sbjct: 86  -DSRVTVLNSDA-ALLCQELAKHGHSHCDYIVSGIPFSILQP 125


>gi|149916683|ref|ZP_01905185.1| putative methyltransferase [Plesiocystis pacifica SIR-1]
 gi|149822400|gb|EDM81789.1| putative methyltransferase [Plesiocystis pacifica SIR-1]
          Length = 269

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDI 89
              +L++I    G  +G  V+E+G G G++T  L      + +V+ ++  ++     +  
Sbjct: 31  SRRVLRRI----GLDEGQRVVELGCGAGHMTCWLADQVGASGRVVAVDISREQLEHARRR 86

Query: 90  SSQHPNRLEIIQDDA 104
            ++ P  ++++  DA
Sbjct: 87  CAERP-WVDLVAADA 100


>gi|46805064|dbj|BAD17045.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 145

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%)

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
           ++   TLL Q +   +         +  L+      T   ++ D+S   F P P V ST+
Sbjct: 42  WFRVTTLLVQAQFAWQPMGVPGHGEHNLLATNARLVTDVRLLMDVSRMDFVPIPIVVSTL 101

Query: 206 IHFIPHL 212
           +   P  
Sbjct: 102 VENHPKR 108


>gi|83941204|ref|ZP_00953666.1| protein-L-isoaspartate O-methyltransferase [Sulfitobacter sp.
           EE-36]
 gi|83847024|gb|EAP84899.1| protein-L-isoaspartate O-methyltransferase [Sulfitobacter sp.
           EE-36]
          Length = 217

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 24  YMGQNF-------LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+G+N        LL+   L K+ +  G  +   V++IG G G  + ++  + A  V+ +
Sbjct: 48  YLGENISLGEGRVLLEPRTLAKMLDDLGVENDELVLDIGCGYGYSSAVIAHM-AEAVVAV 106

Query: 77  EKDQQFFPILKDISSQHP-NRLEIIQD 102
           E D+Q     ++       + + +   
Sbjct: 107 EDDEQMAKEAQETLINADIDNVIVHHG 133


>gi|315607569|ref|ZP_07882564.1| possible DNA-methyltransferase [Prevotella buccae ATCC 33574]
 gi|315250752|gb|EFU30746.1| possible DNA-methyltransferase [Prevotella buccae ATCC 33574]
          Length = 477

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 10/103 (9%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G T++E  AG GN+   L   GA KVI  EKD     +L         + +II DD L V
Sbjct: 29  GKTILEPSAGKGNIVDWLKKNGAGKVIACEKDTNIKKLLN-------GKCDIIADDFLTV 81

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             E+  ++     I+ N P++ G + + +            +L
Sbjct: 82  SSEQISHVD---YIVMNPPFSEGAKHILHAFEIAPAGCTIIAL 121


>gi|299141639|ref|ZP_07034775.1| conserved hypothetical protein [Prevotella oris C735]
 gi|298576975|gb|EFI48845.1| conserved hypothetical protein [Prevotella oris C735]
          Length = 477

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 10/103 (9%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G T++E  AG GN+   L   GA KVI  EKD     +L         + +II DD L V
Sbjct: 29  GKTILEPSAGKGNIVDWLKKNGAGKVIACEKDTNIKKLLN-------GKCDIIADDFLTV 81

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             E+  ++     I+ N P++ G + + +            +L
Sbjct: 82  SSEQISHVD---YIVMNPPFSEGAKHILHAFEIAPAGCTIIAL 121


>gi|148378931|ref|YP_001253472.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum A str. ATCC 3502]
 gi|153933501|ref|YP_001383314.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum A str. ATCC 19397]
 gi|153935333|ref|YP_001386862.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum A str. Hall]
 gi|148288415|emb|CAL82492.1| precorrin-8w decarboxylase [Clostridium botulinum A str. ATCC 3502]
 gi|152929545|gb|ABS35045.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum A str. ATCC 19397]
 gi|152931247|gb|ABS36746.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum A str. Hall]
          Length = 191

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS 90
           D+ IL          +   V+++GAG G+++    T+ A+ +V  IEKD++   I+K   
Sbjct: 20  DIRILS--ISKMNLEENSKVLDVGAGTGSVSIQAATICAKGQVFAIEKDEEALDIIKKNK 77

Query: 91  SQHP-NRLEIIQDDALKVDFE 110
            +     L+II+ +ALKV+  
Sbjct: 78  EKFNCKNLKIIEGEALKVEES 98


>gi|116669530|ref|YP_830463.1| methyltransferase small [Arthrobacter sp. FB24]
 gi|116609639|gb|ABK02363.1| methyltransferase small [Arthrobacter sp. FB24]
          Length = 358

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 15/138 (10%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRL 97
             ++         ++G G G L  +L   G R V+  + + +      +        +R 
Sbjct: 172 VAAAALPSDTLAFDVGTGTGVLAAVLARRGVRSVVATDNEPRAIACAAENFRNLGVQDRA 231

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
           E +  D         F       I+ N P+   T    + + +  + P    +   F  E
Sbjct: 232 EAVLTD--------MFPPGRAPLIVCNPPWIPATP--HSSLDSAVYDPG-SRMLFRFLNE 280

Query: 158 VGERITAQKNSPHYGRLS 175
           + + +  +     +  LS
Sbjct: 281 LSDHL--EPGGEGWLVLS 296


>gi|319762290|ref|YP_004126227.1| protein-l-isoaspartate(d-aspartate) o-methyltransferase
           [Alicycliphilus denitrificans BC]
 gi|330825788|ref|YP_004389091.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Alicycliphilus denitrificans K601]
 gi|317116851|gb|ADU99339.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Alicycliphilus denitrificans BC]
 gi|329311160|gb|AEB85575.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Alicycliphilus denitrificans K601]
          Length = 236

 Score = 43.6 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQ  L +  +  ++           V+EIGAG G +   LL   A +V+ +E D    
Sbjct: 75  RLGQVML-EPRVDARMLHDLQVQPTDRVLEIGAGSGYM-AALLAARAERVVSLEIDPDLA 132

Query: 84  PILKD 88
              ++
Sbjct: 133 EFARE 137


>gi|270208478|ref|YP_003329252.1| adenine-specific DNA methylase [Klebsiella pneumoniae]
 gi|283826863|ref|YP_003377734.1| conserved hypothetical plasmid protein [Shigella sonnei]
 gi|218546514|gb|ACK98903.1| adenine-specific DNA methylase [Klebsiella pneumoniae]
 gi|283466755|emb|CBI12419.1| conserved hypothetical plasmid protein [Shigella sonnei]
 gi|301333120|gb|ADK71067.1| adenine-specific DNA methylase [Escherichia coli]
          Length = 187

 Score = 43.6 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQH 93
           +  ++   +   +   ++E  AG G + + +       +   +E +      L++     
Sbjct: 38  VCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVRYLRENF--- 94

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            N + +   D ++    ++++     RII N P++ G  +
Sbjct: 95  -NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|313126595|ref|YP_004036865.1| tRNA(1-methyladenosine) methyltransferase-like methyltransferase
           [Halogeometricum borinquense DSM 11551]
 gi|312292960|gb|ADQ67420.1| tRNA(1-methyladenosine) methyltransferase-like methyltransferase
           [Halogeometricum borinquense DSM 11551]
          Length = 242

 Score = 43.6 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           I   +G+  G  V++ G G G L+  L  + A +V   E+D  F  + ++    +     
Sbjct: 75  IVGHTGAAAGDRVLDAGTGTGVLSAYLGRMHA-EVTTYERDPDFADVARENMRLAGVEEY 133

Query: 97  LEIIQDDA 104
           +++   D 
Sbjct: 134 VDVRAGDV 141


>gi|169830639|ref|YP_001716621.1| type 12 methyltransferase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637483|gb|ACA58989.1| Methyltransferase type 12 [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 208

 Score = 43.6 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 13/139 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPN 95
           ++I +      G + +E+G G GNLT  L    AR V+ I+   +        I+ +   
Sbjct: 31  RQIVKRLKISPGRSALEVGCGTGNLTVSLAAAMAR-VMSIDFSSRMLERAAGKIARRGFK 89

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            +   Q +A  +  E                       L +  +          +  L  
Sbjct: 90  NVTFRQMNAFDLTPED-----------HGTFDYCFAAFLLHVFAPADRLLLLSRVGRLAT 138

Query: 156 KEVGERITAQKNSPHYGRL 174
           + V     A         L
Sbjct: 139 ERVVVIDYAPGRYRLRYAL 157


>gi|258592134|emb|CBE68439.1| Protein-L-isoaspartate O-methyltransferase (Protein-beta-aspartate
           methyltransferase) (PIMT) (Protein L-isoaspartyl
           methyltransferase) (L-isoaspartyl protein carboxyl
           methyltransferase) [NC10 bacterium 'Dutch sediment']
          Length = 213

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+ + Q F++       + E         V+EIG G G  T +L  LG  KV  IE++++
Sbjct: 57  KQTISQPFMV-----ALMTELLELQKDQRVLEIGTGSGYQTAILAELGV-KVYSIERNRR 110

Query: 82  FFPILKDISS 91
                +    
Sbjct: 111 LASRARYRLE 120


>gi|256367727|ref|YP_003108284.1| YdcA [Escherichia coli]
 gi|228480664|gb|ACQ41991.1| YdcA [Escherichia coli]
          Length = 187

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|257055949|ref|YP_003133781.1| protein-L-isoaspartate carboxylmethyltransferase [Saccharomonospora
           viridis DSM 43017]
 gi|256585821|gb|ACU96954.1| protein-L-isoaspartate carboxylmethyltransferase [Saccharomonospora
           viridis DSM 43017]
          Length = 377

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISS 91
            +++  + E      G  V+EIG G G    +L   LG   V  ++ D       +   +
Sbjct: 95  PSLMALMLERLDVYPGHRVLEIGTGTGYNAALLCHVLGDHAVTSVDIDPCLVERARTRLA 154

Query: 92  QHPNRLEIIQDD 103
               R  ++  D
Sbjct: 155 GLGYRPRLVVGD 166


>gi|188990256|ref|YP_001902266.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167732016|emb|CAP50204.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Xanthomonas campestris pv. campestris]
          Length = 218

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ--QFFPILKDISSQHPN 95
           ++ ++     G  V+E+G G G  T  L  L AR+V+ +E D            ++   +
Sbjct: 70  RMLQALDLQPGEDVLEVGTGSGFSTACLAAL-AREVVSLEIDPALAAAARANLDATGLGS 128

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
            + I   D      E+ F+       +  +P          W+  +        
Sbjct: 129 NVRIETADVFAWQSERRFDAICVTGAVDTVPTQ-----WLQWLRPNGRLFVVRG 177


>gi|270292559|ref|ZP_06198770.1| methyltransferase domain protein [Streptococcus sp. M143]
 gi|270278538|gb|EFA24384.1| methyltransferase domain protein [Streptococcus sp. M143]
          Length = 196

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +G+N  FL D  +  KK+ +             +G TV+++G G G L   L+     + 
Sbjct: 24  LGENMTFLTDAGVFSKKMVDFGSQFLLKCLEVNEGETVLDVGCGYGPLGLSLVKAYGVQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++     I Q +  +    KF        +I+N P   G ++
Sbjct: 84  TMVDINNRALDLARQNAERNKVEATIFQSNIYEQVEGKF------DHVISNPPIRAGKQV 137

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 138 VHEIIEKSRDFLKDGGDLTIVIQK 161


>gi|228999160|ref|ZP_04158742.1| Dimethyladenosine transferase [Bacillus mycoides Rock3-17]
 gi|229006708|ref|ZP_04164342.1| Dimethyladenosine transferase [Bacillus mycoides Rock1-4]
 gi|228754569|gb|EEM03980.1| Dimethyladenosine transferase [Bacillus mycoides Rock1-4]
 gi|228760777|gb|EEM09741.1| Dimethyladenosine transferase [Bacillus mycoides Rock3-17]
          Length = 212

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            V+E G G GNLT  LL +G   V  IE  ++   I K    + P    I + D L  D 
Sbjct: 48  NVLEFGVGTGNLTNKLLLVG-HTVYGIEPSREMRTIAK---QKLPEGFSITEGDFLSFDV 103

Query: 110 EKFFN 114
               +
Sbjct: 104 PDSID 108


>gi|114327554|ref|YP_744711.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
 gi|114315728|gb|ABI61788.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
          Length = 250

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNR 96
           A +  +     V+E G GPG  L  +   +   +   +EK      + +         NR
Sbjct: 36  AAAIPARAEERVLEAGTGPGAGLLCLAHRVPGIQGTGVEKSSDIATLARQNVQTNHLENR 95

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           L II  D L    E   + S+   + AN P++
Sbjct: 96  LSIITQDILDFAQEMSGSPSNYDHVFANPPWH 127


>gi|72162209|ref|YP_289866.1| tRNA (adenine-58-N(1)-) methyltransferase [Thermobifida fusca YX]
 gi|71915941|gb|AAZ55843.1| tRNA (adenine-58-N(1)-) methyltransferase [Thermobifida fusca YX]
          Length = 298

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 6/85 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILK----DI 89
             +I   +    G  V+E G G G LT  LL        V   E+   F  I +      
Sbjct: 92  AAQIIAQADIFPGARVLEAGVGSGALTCWLLRSVGEHGYVSSYERRADFAEIARTNVTRF 151

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFN 114
               P    +   D      E  F+
Sbjct: 152 FGAEPGHWRLTVGDLQDALDEDQFD 176


>gi|17547878|ref|NP_521280.1| hypothetical protein RSc3159 [Ralstonia solanacearum GMI1000]
 gi|17430184|emb|CAD16947.1| conserved hypothetical protein 1177;methyltransferase small
           [Ralstonia solanacearum GMI1000]
          Length = 376

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 25/143 (17%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L   G ++V+  ++D +      +  ++    +++
Sbjct: 190 VAKAPLPSQALAFDIGTGTGVLAAVLAKRGVKRVVGTDQDARALACAHENLTRLGLQSQV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLF 154
           E+I+ D         F       I+ N P          W+ A    P   ++       
Sbjct: 250 EVIEAD--------LFPEGRAPLIVCNPP----------WLPARPSSPIERAVYDPDSRM 291

Query: 155 QKEVGERITA--QKNSPHYGRLS 175
            +   + + A  +     +  LS
Sbjct: 292 LRGFLDGLAAHLEPGGEGWLILS 314


>gi|291007719|ref|ZP_06565692.1| methylase of polypeptide chain release factors [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 371

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 11/136 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             ++    G    +IG G G L  +L   G  +++  ++D +     ++  +       +
Sbjct: 184 VATAALPTGGVAFDIGTGTGVLAAVLAHRGVARIVATDQDPRALACARENIA------RL 237

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
              D + V+    F       ++ N P+          I    + P    +   F   + 
Sbjct: 238 GFADRVSVEAADLFPAGRAALVVCNPPWIPAQPTTP--IENAVYDPG-SRMLRGFLAGLA 294

Query: 160 ERITAQKNSPHYGRLS 175
           + +  +     +  LS
Sbjct: 295 DHL--EPGGEGWLVLS 308


>gi|15668459|ref|NP_247257.1| hypothetical protein MJ_0284 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495889|sp|Q57732|Y284_METJA RecName: Full=Uncharacterized protein MJ0284
 gi|1499066|gb|AAB98272.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 219

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 8/147 (5%)

Query: 31  LDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +D  +   I   +        VI++G G G L      LGA++ I I+ D++     K+ 
Sbjct: 29  IDGKLAADILFFAVNDFYNNVVIDLGCGTGRLAIGSKILGAKRAIGIDIDRESIEAAKEN 88

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPY--NIGTRLLFNWISADT 142
           + +    ++    D   VD E   N+          +I N P+              A  
Sbjct: 89  AKKLNVDVDFYCMDIRDVDDEFLNNVLGEDRDLKRVVIQNPPFGAQKKHADRVFLDKALE 148

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSP 169
                 ++     K+   +    K   
Sbjct: 149 IGDIIYTIHNYPTKDFVIKYVEDKGGK 175


>gi|257094544|ref|YP_003168185.1| type 11 methyltransferase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047068|gb|ACV36256.1| Methyltransferase type 11 [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 282

 Score = 43.3 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLE 98
           E +       V++IGAG     ++L +    +V  +E  + F    +L +  +   +R+E
Sbjct: 69  ELARIRGEDRVLDIGAGLAGPARLLASTLGCRVDCLEMSRDFCAGAVLLNRLTGLDDRIE 128

Query: 99  IIQDDALKVDFEK 111
           + +  AL + F  
Sbjct: 129 VHRGSALDLPFPD 141


>gi|182420221|ref|ZP_02951451.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Clostridium butyricum 5521]
 gi|237665853|ref|ZP_04525841.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375919|gb|EDT73510.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Clostridium butyricum 5521]
 gi|237658800|gb|EEP56352.1| ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 185

 Score = 43.3 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 14/149 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI 89
              + + + ES        ++E G G G  T+ +L     +  VI+IE + +F+  LK  
Sbjct: 20  SKYLAEGMMESIDFSTARCIVEYGPGTGVFTEKILARAKEETQVILIELNVEFYNELKKK 79

Query: 90  SSQHPNRLEIIQDDA------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN---WISA 140
              + N + II + A      LK       +        A+LP N    +L      +  
Sbjct: 80  Y-GYKNNVIIINESAENIDKILKHHEILKIDYVISGLPFASLPKNTSEAILNKTSRLLKE 138

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSP 169
           D    F      LF+K+  E   A   + 
Sbjct: 139 D--GDFITFQYSLFKKKFIENFFAGIRTK 165


>gi|89901378|ref|YP_523849.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhodoferax
           ferrireducens T118]
 gi|89346115|gb|ABD70318.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhodoferax
           ferrireducens T118]
          Length = 217

 Score = 43.3 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  ++ + +       V+EIGAG G +   LL   A++VI +E + +   +
Sbjct: 57  GQVMLA-PRVEARMLQDAAVQKHEKVLEIGAGSGYM-AALLAHRAQRVISLEINPELAQM 114

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            +    +      I   +  + D  K  +   P  +I
Sbjct: 115 ARANLQKAG----IHNVEVRQFDGAKGVSADGPFDVI 147


>gi|304410565|ref|ZP_07392183.1| Methyltransferase type 11 [Shewanella baltica OS183]
 gi|307304658|ref|ZP_07584408.1| Methyltransferase type 11 [Shewanella baltica BA175]
 gi|304351049|gb|EFM15449.1| Methyltransferase type 11 [Shewanella baltica OS183]
 gi|306912060|gb|EFN42484.1| Methyltransferase type 11 [Shewanella baltica BA175]
          Length = 238

 Score = 43.3 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +      TV++IGAG G L+ M        +  +E D       +      P  NRL ++
Sbjct: 30  AQLTAAKTVLDIGAGSGLLSLMAAQRSQAHITSVELDTSAAEACQHNFHNSPWANRLTLV 89

Query: 101 Q---DDAL-KVDFEKFFNISSPIRIIANLPY 127
                D    ++++++F+      II N PY
Sbjct: 90  NSSIQDFCQHIEYQEYFD-----HIICNPPY 115


>gi|296132755|ref|YP_003640002.1| Methyltransferase type 11 [Thermincola sp. JR]
 gi|296031333|gb|ADG82101.1| Methyltransferase type 11 [Thermincola potens JR]
          Length = 190

 Score = 43.3 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D+N ++KI + +   DG TV+++G G G L   L   G R +  ++  ++   + +   +
Sbjct: 22  DVNKIEKILDIAKIPDGSTVLDVGTGTGVLVPFLNEAGCR-IDAVDISEKMLEVAR---A 77

Query: 92  QHPNRLEIIQDDALKVDFEKFFNI 115
           + P     I  D    D +K +++
Sbjct: 78  KFPGMANFIAADMQSADLQKKYDV 101


>gi|134294590|ref|YP_001118325.1| methyltransferase small [Burkholderia vietnamiensis G4]
 gi|134137747|gb|ABO53490.1| methyltransferase small [Burkholderia vietnamiensis G4]
          Length = 392

 Score = 43.3 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK 111
           +G G G L  +L   G   V+  ++D +     ++  ++  H +R++++  D        
Sbjct: 219 VGTGTGVLAAVLAARGVEHVVATDQDPRALACARENVARLGHADRVDVVAAD-------- 270

Query: 112 FFNISSPIRIIANLPY 127
            F       ++ N P+
Sbjct: 271 LFPAGRAPLVVCNPPW 286


>gi|229013593|ref|ZP_04170725.1| Dimethyladenosine transferase [Bacillus mycoides DSM 2048]
 gi|229062071|ref|ZP_04199396.1| Dimethyladenosine transferase [Bacillus cereus AH603]
 gi|229135198|ref|ZP_04263997.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST196]
 gi|229169119|ref|ZP_04296834.1| Dimethyladenosine transferase [Bacillus cereus AH621]
 gi|228614347|gb|EEK71457.1| Dimethyladenosine transferase [Bacillus cereus AH621]
 gi|228648240|gb|EEL04276.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST196]
 gi|228717223|gb|EEL68898.1| Dimethyladenosine transferase [Bacillus cereus AH603]
 gi|228747702|gb|EEL97573.1| Dimethyladenosine transferase [Bacillus mycoides DSM 2048]
          Length = 212

 Score = 43.3 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRTIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|163942125|ref|YP_001647009.1| methyltransferase type 11 [Bacillus weihenstephanensis KBAB4]
 gi|229892092|sp|A9VHZ6|Y4222_BACWK RecName: Full=Uncharacterized methyltransferase BcerKBAB4_4222
 gi|163864322|gb|ABY45381.1| Methyltransferase type 11 [Bacillus weihenstephanensis KBAB4]
          Length = 212

 Score = 43.3 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRTIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|319939041|ref|ZP_08013405.1| methyltransferase domain-containing protein [Streptococcus
           anginosus 1_2_62CV]
 gi|319812091|gb|EFW08357.1| methyltransferase domain-containing protein [Streptococcus
           anginosus 1_2_62CV]
          Length = 197

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 30/174 (17%)

Query: 25  MGQN--FLLDLNI-LKKIAES--------SGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQN  FL D  +  KK+ +                +V+++G G G L   L+     + 
Sbjct: 24  LGQNVTFLTDAGVFSKKMIDYGSQALLKCLDFHKQESVLDVGCGYGTLGLTLVKAKEVEA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +Q+    L   +++    L  I    L  + E  F       II+N P   G ++
Sbjct: 84  TLVDINQRALD-LARQNAERNQVLATIFQSNLYQNVEGRF-----HHIISNPPIRAGKQV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK------------EVGERITAQKNSPHYGRL 174
           +   I+   T       LT++ QK            EV       K    Y  L
Sbjct: 138 VHEVITGSYTHLLDGGDLTIVIQKKQGAPSAKAKMEEVFGNCEILKKDKGYYIL 191


>gi|315619249|gb|EFU99825.1| hypothetical protein EC3431_0592 [Escherichia coli 3431]
          Length = 187

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|307354124|ref|YP_003895175.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307157357|gb|ADN36737.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 222

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 33  LNILKKIAE----------SSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQ 81
            N+++KI            S    +G  ++E+G+G G LT+ ++       V  I+   +
Sbjct: 16  ENLIEKIVSDHKAFFNQAVSLVPDNGGDILELGSGTGYLTEKIIERNPGASVTCIDMTPE 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
              +   ++ Q+   +E I  D  +   +K F++        +LP
Sbjct: 76  MIDV--AMAKQNLEGVEFILGDFREKWPDKKFDMIISTLCFHHLP 118


>gi|291446281|ref|ZP_06585671.1| L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291349228|gb|EFE76132.1| L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 367

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++      +DG  V+EIGAG G ++ +L    G   V  +E D        +  +
Sbjct: 93  PSMVARMLGLLDVMDGQRVLEIGAGTGYVSALLCERLGDDLVHSVELDPVVARQAAEALA 152

Query: 92  QHPNRLEIIQDD 103
           Q   R  +   D
Sbjct: 153 QSGYRPHLRVGD 164


>gi|260461738|ref|ZP_05809984.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
 gi|319785290|ref|YP_004144766.1| ribosomal L11 methyltransferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032379|gb|EEW33644.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
 gi|317171178|gb|ADV14716.1| ribosomal L11 methyltransferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 293

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +S +L G TV+EIG G G    +    GARKV   E D++     ++I   +  +  I+
Sbjct: 36  ASCNLRGKTVVEIGTGAGLPAMLFARHGARKVFTCEMDERIAAAAREIIRNNDLQDRIV 94


>gi|257869215|ref|ZP_05648868.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Enterococcus
           gallinarum EG2]
 gi|257803379|gb|EEV32201.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Enterococcus
           gallinarum EG2]
          Length = 216

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 23/123 (18%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL    +L  IAE +    G +VIE G+G GNLT  L+    + V  IE        ++ 
Sbjct: 31  FLHYPELLANIAEKA----GDSVIEFGSGTGNLTLELIRRK-KTVFAIEP----SAAMRQ 81

Query: 89  ISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           ++   P  +++  I  D      E+F  I+ PI         I +  +F+ ++       
Sbjct: 82  VAEAKPELSQVTFIDGD-----MEQFPQINFPID-------TIVSSYVFHHLNETEKQRV 129

Query: 147 WES 149
            + 
Sbjct: 130 IKR 132


>gi|239942812|ref|ZP_04694749.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239989271|ref|ZP_04709935.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
          Length = 354

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++      +DG  V+EIGAG G ++ +L    G   V  +E D        +  +
Sbjct: 80  PSMVARMLGLLDVMDGQRVLEIGAGTGYVSALLCERLGDDLVHSVELDPVVARQAAEALA 139

Query: 92  QHPNRLEIIQDD 103
           Q   R  +   D
Sbjct: 140 QSGYRPHLRVGD 151


>gi|88601538|ref|YP_501716.1| hypothetical protein Mhun_0225 [Methanospirillum hungatei JF-1]
 gi|88187000|gb|ABD39997.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
          Length = 294

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 26/175 (14%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             IL  I  +   + G  V++IGAG G+L+  L  +GA  V  ++   +    L   + +
Sbjct: 60  KRILDLIISTGIDIKGSQVLDIGAGTGSLSIPLAHMGAH-VTALDFSDEMLKKLNKRADE 118

Query: 93  HPNRLEIIQDDALKVD-----FEKFFNISSPIRIIANLPYNIGTRLLFNWIS-------- 139
               + I     LK        E+ F     + I +  P       L   +         
Sbjct: 119 --ENVTI--QTILKSWDTINPDEEGFRKKFDLVIASMTPAVRNPHDLSLMLETAKGICYY 174

Query: 140 ----ADTWPPFWESLT-LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
                  W P +  L   LF +E  E          Y  L    G+R + +++ D
Sbjct: 175 SGWVHRKWDPSYYDLYKTLFHEEFKESPHGFYLPFMYLYL---LGYRPEVSLLED 226


>gi|229019596|ref|ZP_04176410.1| Dimethyladenosine transferase [Bacillus cereus AH1273]
 gi|229025835|ref|ZP_04182233.1| Dimethyladenosine transferase [Bacillus cereus AH1272]
 gi|228735446|gb|EEL86043.1| Dimethyladenosine transferase [Bacillus cereus AH1272]
 gi|228741699|gb|EEL91885.1| Dimethyladenosine transferase [Bacillus cereus AH1273]
          Length = 212

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P +
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PQK 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|193070165|ref|ZP_03051110.1| conserved hypothetical protein [Escherichia coli E110019]
 gi|192956484|gb|EDV86942.1| conserved hypothetical protein [Escherichia coli E110019]
          Length = 187

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|319654437|ref|ZP_08008524.1| hypothetical protein HMPREF1013_05144 [Bacillus sp. 2_A_57_CT2]
 gi|317393936|gb|EFV74687.1| hypothetical protein HMPREF1013_05144 [Bacillus sp. 2_A_57_CT2]
          Length = 468

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
           IG G G LT+       + V+V E D++   I +     + N +EI   D  K+      
Sbjct: 292 IGHGIGTLTRK-FENANKNVLVAEIDEEVLEISRQYFQYNGNSVEI--GDGRKI----LK 344

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTW 143
              S   +I    YN  T++ F+ IS + +
Sbjct: 345 EQQSKFDLIFLDAYNNTTQIPFHLISKEFF 374


>gi|83589437|ref|YP_429446.1| 50S ribosomal protein L11P methyltransferase [Moorella
           thermoacetica ATCC 39073]
 gi|123524952|sp|Q2RKY6|PRMA_MOOTA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|83572351|gb|ABC18903.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Moorella
           thermoacetica ATCC 39073]
          Length = 318

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 12/96 (12%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
              G  V+++G G G L      +GA  V+ ++ D     + +   +++   +++ +  +
Sbjct: 172 LKPGARVVDVGCGTGILALAAAKMGAGAVLALDLDPVAVAVARKNIARNGAADKVTVRNN 231

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           D L         +  P  ++     NI   ++   I
Sbjct: 232 DLL-------AGLEGPFDLVVA---NILAEVILKMI 257


>gi|21232764|ref|NP_638681.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66767162|ref|YP_241924.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|21114582|gb|AAM42605.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66572494|gb|AAY47904.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 218

 Score = 43.3 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ--QFFPILKDISSQHPN 95
           ++ ++     G  V+E+G G G  T  L  L AR+V+ +E D            ++   +
Sbjct: 70  RMLQALDLQPGEDVLEVGTGSGFSTACLAAL-AREVVSLEIDPALAAAARANLDATGLGS 128

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
            + I   D      E+ F+       +  LP          W+  +        
Sbjct: 129 NVRIETADVFAWQSERRFDAICVTGAVDTLPTQ-----WLQWLRPNGRLFVVRG 177


>gi|209549132|ref|YP_002281049.1| methyltransferase type 12 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534888|gb|ACI54823.1| Methyltransferase type 12 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 259

 Score = 43.3 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  +   +      TV+E+G G G  T+   T    +++ I+   +     ++  + 
Sbjct: 23  EALIDDVVSYAKLKPSDTVLEVGCGTGQATKSFATRD-LQILAIDPGPEMVRTARETLAN 81

Query: 93  HPNRLEIIQ 101
             N +E+++
Sbjct: 82  FTN-VELLE 89


>gi|168182788|ref|ZP_02617452.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum Bf]
 gi|237794235|ref|YP_002861787.1| precorrin-6y C5,15-methyltransferase subunit CbiT [Clostridium
           botulinum Ba4 str. 657]
 gi|182673965|gb|EDT85926.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum Bf]
 gi|229264001|gb|ACQ55034.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum Ba4 str. 657]
          Length = 191

 Score = 43.3 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 38  KIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94
           +I   +     +   ++++GAG G+++     + A+ +V+ IEKD++   I+K    +  
Sbjct: 22  RIISIAKMNLEENSKILDVGAGTGSISIQAAKICAKGQVVAIEKDEEALDIIKKNKDKFN 81

Query: 95  -NRLEIIQDDALKVD 108
              L+I++ +AL+V+
Sbjct: 82  CENLKILKGEALEVE 96


>gi|83749844|ref|ZP_00946813.1| Methyltransferase [Ralstonia solanacearum UW551]
 gi|207744704|ref|YP_002261096.1| hypothetical protein 1177; methyltransferase small [Ralstonia
           solanacearum IPO1609]
 gi|83723481|gb|EAP70690.1| Methyltransferase [Ralstonia solanacearum UW551]
 gi|206596111|emb|CAQ63038.1| conserved hypothetical protein 1177; methyltransferase small
           [Ralstonia solanacearum IPO1609]
          Length = 342

 Score = 43.3 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             ++         +IG G G L  +L   G + V+  ++D +     ++  ++    +R+
Sbjct: 156 VANAPLPSQALAFDIGTGTGVLAAVLAKRGVKHVVGTDQDARALVCARENLARLGLQSRV 215

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+I+ D         F       I+ N P+
Sbjct: 216 EVIEAD--------LFPEGRAPLIVCNPPW 237


>gi|260751952|ref|YP_003232490.1| DNA-methyltransferase-like protein [Escherichia coli O26:H11 str.
           11368]
 gi|257757315|dbj|BAI28815.1| DNA-methyltransferase-like protein [Escherichia coli O26:H11 str.
           11368]
          Length = 187

 Score = 43.3 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQH 93
           +  ++   +   +   ++E  AG G + + +       +   +E +      L++     
Sbjct: 38  VCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVRYLRENF--- 94

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 95  -NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|196042665|ref|ZP_03109904.1| putative ribosomal RNA adenine dimethylase [Bacillus cereus
           03BB108]
 gi|229185368|ref|ZP_04312551.1| Ribosomal RNA adenine dimethylase [Bacillus cereus BGSC 6E1]
 gi|196026149|gb|EDX64817.1| putative ribosomal RNA adenine dimethylase [Bacillus cereus
           03BB108]
 gi|228598101|gb|EEK55738.1| Ribosomal RNA adenine dimethylase [Bacillus cereus BGSC 6E1]
          Length = 189

 Score = 43.3 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI 89
              + K++  S        +IE G G G  T+ L+     +  +++IE+++ F+  L + 
Sbjct: 24  SKKLAKQMVSSICFKKAKCIIEFGPGTGIFTEELIQRKYPETILLLIEQNEAFYKKLSEK 83

Query: 90  SSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
             ++   + II D A  +    EK+        +      ++  R+  N +         
Sbjct: 84  Y-RYKENVYIIHDSAENVTHYVEKYQIEKVDYIVSGLPFTSLPFRVSKNILYETKNILEE 142

Query: 148 ESLTLLFQ 155
           E   + FQ
Sbjct: 143 EGTFITFQ 150


>gi|56476332|ref|YP_157921.1| putative protein-L-isoaspartate o-methyltransferase [Aromatoleum
           aromaticum EbN1]
 gi|56312375|emb|CAI07020.1| putative protein-L-isoaspartate o-methyltransferase [Aromatoleum
           aromaticum EbN1]
          Length = 217

 Score = 43.3 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L    I  KI ++       TV+E+GAG G     LL   +  V  I+ + +   +
Sbjct: 57  GQSMLK-PVIEGKILQALQVKRSDTVLEVGAGSGYF-AALLAACSDWVRTIDIEPELVKL 114

Query: 86  LKDISSQHP-NRLEIIQDDA 104
             +  +++    + +   DA
Sbjct: 115 AAENLARYGVENVIVEDGDA 134


>gi|288818388|ref|YP_003432736.1| methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|288787788|dbj|BAI69535.1| methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|308751981|gb|ADO45464.1| methyltransferase small [Hydrogenobacter thermophilus TK-6]
          Length = 238

 Score = 43.3 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
           G      V+++GAG G L+ +       +V  +E+D+    +L      +Q   ++ +I+
Sbjct: 39  GVKKNSKVVDLGAGFGTLSILTSLKYGCEVWAVERDETMLELLNYNVRINQLDGKVHVIE 98

Query: 102 DD------ALKVDFEKFFNISSPI 119
            D       +K DF     ++ P 
Sbjct: 99  GDIRFIERFMKRDFFDNVLLNPPF 122


>gi|228910211|ref|ZP_04074030.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 200]
 gi|228849494|gb|EEM94329.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 200]
          Length = 212

 Score = 43.3 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            NIL+ +           V+E G G GNLT  LL  G R V  IE  ++   I K+    
Sbjct: 35  ENILEDVVN----KSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL-- 87

Query: 93  HPNRLEIIQDDALKVDFEKFFN 114
            P    I + D L  +     +
Sbjct: 88  -PKEFSITEGDFLSFEVPNSID 108


>gi|169832916|ref|YP_001694296.1| methyltransferase small subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168995418|gb|ACA36030.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae Hungary19A-6]
 gi|327390192|gb|EGE88535.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA04375]
          Length = 193

 Score = 43.3 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+ +              G TV+++G G G L   L+ +   + 
Sbjct: 21  LGQKMTFLTDAGVFSKKMVDFGSQLLLKCLDVNQGETVLDVGCGYGPLGLSLVKVYGVQA 80

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +       +F        +I+N P   G ++
Sbjct: 81  TMVDINTRALDLAQRNAEKNNAKATIFQSNIYARVQGRF------DHVISNPPIRAGKQV 134

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 135 VHEIIEKSKDFLEIGGDLTIVIQK 158


>gi|150403388|ref|YP_001330682.1| type 11 methyltransferase [Methanococcus maripaludis C7]
 gi|150034418|gb|ABR66531.1| Methyltransferase type 11 [Methanococcus maripaludis C7]
          Length = 279

 Score = 43.3 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 22  KKYMGQNFL----LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            K   Q FL     +   +++I E        T++++GAGPG L   L  L A  V  +E
Sbjct: 34  SKKKAQEFLERSNKNPGRIQEIIELFKPGKHSTILDVGAGPGTLAVPLAGLAAH-VTAVE 92

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
                   + ++  ++  +  I   D +   +E  
Sbjct: 93  P----ANGMAEVMGEYAAQEGISNLDIVPKKWEDL 123


>gi|324020771|gb|EGB89990.1| hypothetical protein HMPREF9542_00519 [Escherichia coli MS 117-3]
          Length = 187

 Score = 43.3 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L+D      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRDNF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|303326143|ref|ZP_07356586.1| cation-transporting P-type ATPase [Desulfovibrio sp. 3_1_syn3]
 gi|302864059|gb|EFL86990.1| cation-transporting P-type ATPase [Desulfovibrio sp. 3_1_syn3]
          Length = 197

 Score = 43.3 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQ 92
           ++ +++A      DG  V+E+GAG G +T+ L   +   +++V+E+   F  +L++   +
Sbjct: 43  HLARRMAAMLPPGDG-LVVELGAGTGAVTRALRACVAPERLLVLERLPAFCRVLRNRFPE 101

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
               L +I+ DA ++  +          ++++LP
Sbjct: 102 ----LTVIRGDATRL-ADYLPANRPVAAVVSSLP 130


>gi|169546543|ref|YP_001711982.1| hypothetical protein pVM01_p133 [Escherichia coli]
 gi|331652610|ref|ZP_08353621.1| conserved hypothetical protein [Escherichia coli M718]
 gi|168831095|gb|ACA34876.1| unknown [Escherichia coli]
 gi|331049716|gb|EGI21782.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 187

 Score = 43.3 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L+D      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRDNF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|167752001|ref|ZP_02424128.1| hypothetical protein ALIPUT_00243 [Alistipes putredinis DSM 17216]
 gi|167660242|gb|EDS04372.1| hypothetical protein ALIPUT_00243 [Alistipes putredinis DSM 17216]
          Length = 232

 Score = 43.3 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 43  SGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +    G   ++++G G G +  ML    A  +  ++ D +      +  +  P  +RL  
Sbjct: 29  AEVRPGDRRMLDVGTGTGLIALMLAQRSAAWITAVDIDVECATQAAENFAASPWADRL-- 86

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
              DA+ V  +++  +     I++N PY + +
Sbjct: 87  ---DAVSVAVQRYDPVEKFDLIVSNPPYYVDS 115


>gi|300702626|ref|YP_003744226.1| methyltransferase [Ralstonia solanacearum CFBP2957]
 gi|299070287|emb|CBJ41579.1| putative methyltransferase, Methylase of polypeptide chain release
           factors [Ralstonia solanacearum CFBP2957]
          Length = 390

 Score = 43.3 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             ++         +IG G G L  +L   G ++V+  ++D +     ++  ++    +++
Sbjct: 204 VANAPLPSQALAFDIGTGTGVLAAVLAKRGVKRVVGTDQDARALACARENLARLGLQSQV 263

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+I  D         F       I+ N P+
Sbjct: 264 EVIDAD--------LFPEGRAPLIVCNPPW 285


>gi|210623863|ref|ZP_03294098.1| hypothetical protein CLOHIR_02049 [Clostridium hiranonis DSM 13275]
 gi|210153289|gb|EEA84295.1| hypothetical protein CLOHIR_02049 [Clostridium hiranonis DSM 13275]
          Length = 320

 Score = 43.3 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                 V +IG G G L      LGA  V  ++ D+    + K+   +    +++ ++  
Sbjct: 180 VTPDAKVFDIGCGSGILAIAAAKLGANDVTAVDLDEVAVEVAKENVKESNVEDKVTVLHG 239

Query: 103 DALKVDFEK 111
           +   V  +K
Sbjct: 240 NLTDVIHDK 248


>gi|187778462|ref|ZP_02994935.1| hypothetical protein CLOSPO_02056 [Clostridium sporogenes ATCC
           15579]
 gi|187772087|gb|EDU35889.1| hypothetical protein CLOSPO_02056 [Clostridium sporogenes ATCC
           15579]
          Length = 312

 Score = 43.3 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
             +  TV +IG G G L+     LGA+ VI ++ D       K+ I   + + +EI++ +
Sbjct: 174 IKEDKTVFDIGCGSGILSIASAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGN 233

Query: 104 ALKV 107
            ++V
Sbjct: 234 LMEV 237


>gi|159906162|ref|YP_001549824.1| SAM-binding domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159887655|gb|ABX02592.1| Methyltransferase type 12 [Methanococcus maripaludis C6]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 12/140 (8%)

Query: 21  PKKYMGQNFLLD-----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
             K   +N L +      N ++ +          +++EIG GPG  T  L      ++ V
Sbjct: 31  FSKNYAKNVLNNKNGWVENNIEYLRNEFKIDKNTSILEIGPGPGTYTIPLAKE-VGEITV 89

Query: 76  IEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           +E+      ILK+   +   + + II     + D  +     +P  + ++  Y++G   +
Sbjct: 90  VEQSTGMIDILKNRMKEEGIDNVNIINK---RWDNFELDGDINPDVVFSS--YSLGVDDM 144

Query: 135 FNWISADTWPPFWESLTLLF 154
              +             L F
Sbjct: 145 EESLKKMNNYAEKYCCILTF 164


>gi|134103755|ref|YP_001109416.1| methylase of polypeptide chain release factors [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916378|emb|CAM06491.1| methylase of polypeptide chain release factors [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 338

 Score = 43.3 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 11/136 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             ++    G    +IG G G L  +L   G  +++  ++D +     ++  +       +
Sbjct: 151 VATAALPTGGVAFDIGTGTGVLAAVLAHRGVARIVATDQDPRALACARENIA------RL 204

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
              D + V+    F       ++ N P+          I    + P    +   F   + 
Sbjct: 205 GFADRVSVEAADLFPAGRAALVVCNPPWIPAQPTTP--IENAVYDPG-SRMLRGFLAGLA 261

Query: 160 ERITAQKNSPHYGRLS 175
           + +  +     +  LS
Sbjct: 262 DHL--EPGGEGWLVLS 275


>gi|209549778|ref|YP_002281695.1| methyltransferase type 11 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535534|gb|ACI55469.1| Methyltransferase type 11 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 266

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
            + +G  DG  V+++G G G+L   L    G +++  I+    F    K   +    R+ 
Sbjct: 29  IDFAGLADGDRVLDVGCGTGSLAFTLAERPGLKEIAAIDYSPVFVEAAKW--ANSDPRIT 86

Query: 99  IIQDDALKVDFEK-FFNISSPIRIIANLP 126
           I Q DA  + FE   F+ +  + ++  +P
Sbjct: 87  IQQGDACALPFEDNRFDRAMSLLVLHFVP 115


>gi|163757547|ref|ZP_02164636.1| probable phosphatidylethanolamine
           N-methyltransferase/phosphatidyl-N-methylethanolamine
           [Hoeflea phototrophica DFL-43]
 gi|162285049|gb|EDQ35331.1| probable phosphatidylethanolamine
           N-methyltransferase/phosphatidyl-N-methylethanolamine
           [Hoeflea phototrophica DFL-43]
          Length = 196

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQH 93
            + +A       G+ V+E+G G G +T+ +L  G     ++ +E           +    
Sbjct: 39  ARSMASLVEPASGLPVLELGPGTGVITRAILDRGVEPSNLMSVEF---CAEFHARLMLDL 95

Query: 94  PNRLEIIQDDALKVD 108
           P R+  I  +A  +D
Sbjct: 96  P-RVNFIHGNAFDLD 109


>gi|21231829|ref|NP_637746.1| hypothetical protein XCC2392 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21113544|gb|AAM41670.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 207

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 9/124 (7%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103
           L G  V+++ AG G L    ++ GA   ++IE+D      L++  ++     +++++QDD
Sbjct: 55  LAGARVLDLFAGSGALGLEAVSRGAAHALLIERDPGLAQRLREHVARLGAAEQVQVLQDD 114

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIG--TRLLFNW---ISADTWPPFWESLTLLFQKEV 158
           AL+  + +         +  + P+  G    +L      ++AD W        L  Q   
Sbjct: 115 ALR--WLERAPTGQVDLVFVDPPFAAGLWAPVLERLSPHLAADAWLYLETPAELPPQVPP 172

Query: 159 GERI 162
           G  +
Sbjct: 173 GWHL 176


>gi|33594467|ref|NP_882111.1| putative protein-L-isoaspartate O-methyltransferase [Bordetella
           pertussis Tohama I]
 gi|33564542|emb|CAE43858.1| putative protein-L-isoaspartate O-methyltransferase [Bordetella
           pertussis Tohama I]
 gi|332383878|gb|AEE68725.1| putative protein-L-isoaspartate O-methyltransferase [Bordetella
           pertussis CS]
          Length = 226

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QN L    I  ++A+         V+EIG G G     LL   A++V  +E D +     
Sbjct: 69  QNMLA-PKIEARLAQELLLQPTDCVLEIGTGSGY-QAALLAYLAQQVTTVEIDSRLATFA 126

Query: 87  KDISS 91
           +    
Sbjct: 127 QQNLQ 131


>gi|320107739|ref|YP_004183329.1| type 11 methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319926260|gb|ADV83335.1| Methyltransferase type 11 [Terriglobus saanensis SP1PR4]
          Length = 259

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 38/197 (19%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +      G  ++++G G G LTQ L   GA  +  ++           +++ H   L +
Sbjct: 34  VDWLDPKPGERILDLGCGDGVLTQRLAATGA-ILTGVDSSPAM------LAAAHSLGLNV 86

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ---K 156
           ++  A ++ FE  F+              + +    +WI     P   + +        +
Sbjct: 87  VERKATELAFENAFDA-------------VFSNAALHWIHKTGQPALLQGVHRALVPGGR 133

Query: 157 EVGERITAQKNSPHYGRL-SVLTGWRTKATMMFDISPHVFFPSPKVTSTV---------- 205
            V E       +     L SVL  +   A    D     F+PSPK    +          
Sbjct: 134 FVAEMGGIGNIASIRVALQSVLKRYGIDAETQAD----SFYPSPKAYGALLADAGFRVER 189

Query: 206 IHFIPHLNPIPCCLESL 222
           +  IP   P+P  +ES 
Sbjct: 190 MELIPRPTPLPNGMESW 206


>gi|300704889|ref|YP_003746492.1| protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299072553|emb|CBJ43903.1| Protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 246

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQN L    +  ++ +         V+E+GAG G +  +L   G R V  ++   +    
Sbjct: 87  GQNMLP-PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RHVTTVDIAPELVAF 144

Query: 86  LKDISSQHPNRLEIIQDDA 104
            +D  +++     +   D 
Sbjct: 145 ARDNLARNG----VTNADV 159


>gi|298484042|ref|ZP_07002211.1| SAM-dependent methyltransferase [Bacteroides sp. D22]
 gi|298269823|gb|EFI11415.1| SAM-dependent methyltransferase [Bacteroides sp. D22]
          Length = 236

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IG G G +  ML        K++ +E D+      ++  ++ P   R+E
Sbjct: 33  ASVERARRILDIGTGTGLVALMLAQRSLPDAKIVALEIDEAAAGQARENVARSPWQERIE 92

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           ++Q D  K      F++     I++N PY + +
Sbjct: 93  VVQADFKKYRSSDKFDV-----IVSNPPYFVDS 120


>gi|296139859|ref|YP_003647102.1| tRNA (adenine-N(1)-)-methyltransferase [Tsukamurella paurometabola
           DSM 20162]
 gi|296027993|gb|ADG78763.1| tRNA (adenine-N(1)-)-methyltransferase [Tsukamurella paurometabola
           DSM 20162]
          Length = 275

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL        V   E  +         +++ 
Sbjct: 88  AAQIVAEGDIFPGARVLEAGAGSGALTCSLLRAVGPEGSVTSWEVREDHAEYAAKNVEEF 147

Query: 90  SSQHPNRLEIIQDDALKVDFEKF 112
               P+   +   D  + D  + 
Sbjct: 148 FGGRPDNWNLRLGDLAEYDGPQV 170


>gi|293416306|ref|ZP_06658945.1| hypothetical protein ECDG_03058 [Escherichia coli B185]
 gi|291431662|gb|EFF04645.1| hypothetical protein ECDG_03058 [Escherichia coli B185]
          Length = 187

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRNHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D +     ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQHGDFMAWQPAQYYS-----RIIMNPPFSNGQDI 128


>gi|257469878|ref|ZP_05633970.1| Transcriptional regulator (ArsR family) protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|317064107|ref|ZP_07928592.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689783|gb|EFS26618.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 251

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I E     D   + ++G G G  T+++     R+VI ++++Q     LK+ + +    + 
Sbjct: 19  IIELLPIEDNQVIADLGCGTGGFTEIISE-KVRQVIAVDRNQNLLTNLKEKNIK---NVS 74

Query: 99  IIQDDALKVDF 109
           II++D  K+D+
Sbjct: 75  IIENDISKIDY 85


>gi|160945339|ref|ZP_02092565.1| hypothetical protein FAEPRAM212_02859 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443070|gb|EDP20075.1| hypothetical protein FAEPRAM212_02859 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105464|emb|CBL03008.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit/precorrin-6Y C5,15-methyltransferase
           (decarboxylating), CbiT subunit [Faecalibacterium
           prausnitzii SL3/3]
          Length = 398

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 40  AESSGS-----LDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQH 93
             ++           T+ ++GAG G+++  L L   A +V  +E D +   +++    + 
Sbjct: 232 VRAAALAKLAVTPTDTLWDVGAGTGSVSVELALAAPAGQVYAVECDPEACALIQQNREKF 291

Query: 94  PN-RLEIIQDDALKVDFEKFFNISSPIRII 122
               L +I+  A     E    + +P  + 
Sbjct: 292 AAYNLTLIEGKA----PEALDTLPAPDAVF 317


>gi|33598491|ref|NP_886134.1| putative protein-L-isoaspartate O-methyltransferase [Bordetella
           parapertussis 12822]
 gi|33574620|emb|CAE39271.1| putative protein-L-isoaspartate O-methyltransferase [Bordetella
           parapertussis]
          Length = 226

 Score = 43.3 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QN L    I  ++A+         V+EIG G G     LL   A++V  +E D +     
Sbjct: 69  QNMLA-PKIEARLAQELLLQPTDCVLEIGTGSGY-QAALLAHLAQQVTTVEIDSRLATFA 126

Query: 87  KDISS 91
           +    
Sbjct: 127 QQNLQ 131


>gi|319794936|ref|YP_004156576.1| methyltransferase type 11 [Variovorax paradoxus EPS]
 gi|315597399|gb|ADU38465.1| Methyltransferase type 11 [Variovorax paradoxus EPS]
          Length = 225

 Score = 43.3 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +L   +  ++          +V+EIG G G +   LL   A +V+ +E +        + 
Sbjct: 68  MLSPKVEARMLHDLKVQKHESVLEIGTGSGFM-AALLGARAAQVLSLEINPVLAARAAET 126

Query: 90  SSQHP-NRLEIIQDD-ALKVDFEKFFNISSPIRIIANLPYNI 129
             Q+  + +E+   D A+ +     F++      +A +P N+
Sbjct: 127 LRQNGVSNVEVRHADGAVPLPSGPSFDVIVLSGSVARIPQNL 168


>gi|297717878|gb|ADI50082.1| S-adenosyl-methyltransferase MraW [Candidatus Odyssella
           thessalonicensis L13]
          Length = 314

 Score = 43.3 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 36/70 (51%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +LK++ E+    DG   I+   G G  T+ +L     +VI +++D +     + + +Q
Sbjct: 4   PVLLKEMQEALAIRDGALYIDATFGGGGYTRAILEQANCQVIAVDRDPEAIQRAEQLKAQ 63

Query: 93  HPNRLEIIQD 102
           +P+RL + Q 
Sbjct: 64  YPDRLFVFQG 73


>gi|255620758|ref|XP_002540147.1| conserved hypothetical protein [Ricinus communis]
 gi|223498816|gb|EEF22236.1| conserved hypothetical protein [Ricinus communis]
          Length = 217

 Score = 43.3 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++  +  E      G  +++IG G G LT+ +   GA  +I ++   +     +      
Sbjct: 30  DLAARAVELLNPQPGERILDIGCGDGYLTEKIAATGA-VMIGVDYSPELVATARAR---- 84

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
              L++   +A ++DF + F+
Sbjct: 85  --NLDVRVGNAEELDFFQEFD 103


>gi|312794827|ref|YP_004027749.1| methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312166602|emb|CBW73605.1| Methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454]
          Length = 383

 Score = 43.3 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 36  LKKIAESSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-- 92
           L  IA++        +  +IG G G +  +L   G R+VI  + D +     ++  ++  
Sbjct: 190 LDLIAQAPLPAGADALAFDIGTGTGVIAALLARRGVRRVIATDVDSRALDCARENVARLG 249

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              ++E+++ D   +       + +P  + A    +I   + 
Sbjct: 250 LSAQVEVVRADLFPLSRRAPLVVCNPPWVPARPSASIEHAVF 291


>gi|331675751|ref|ZP_08376469.1| conserved hypothetical protein [Escherichia coli H591]
 gi|331076525|gb|EGI47801.1| conserved hypothetical protein [Escherichia coli H591]
          Length = 187

 Score = 43.3 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L+D      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRDNF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|189465685|ref|ZP_03014470.1| hypothetical protein BACINT_02046 [Bacteroides intestinalis DSM
           17393]
 gi|189433949|gb|EDV02934.1| hypothetical protein BACINT_02046 [Bacteroides intestinalis DSM
           17393]
          Length = 235

 Score = 43.3 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +   +   +++IG G G +  ML       +V  IE D+      ++  ++ P  NR+++
Sbjct: 33  AEVGNPQQILDIGTGTGLIALMLAQRNPLSQVTAIEIDEAAATQAEENIARSPWANRIKV 92

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           I +D        F   +    I++N PY +
Sbjct: 93  ICNDF-----SLFQTDNKYHLIVSNPPYFV 117


>gi|331268778|ref|YP_004395270.1| biotin biosynthesis protein BioC [Clostridium botulinum BKT015925]
 gi|329125328|gb|AEB75273.1| biotin biosynthesis protein BioC [Clostridium botulinum BKT015925]
          Length = 274

 Score = 43.3 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            ++EIG G G+LT+ LL       +  I+       ++KD           I  D 
Sbjct: 47  NILEIGCGTGSLTKTLLENFPNSNITAIDISPGMIEVVKDKFKNSSINF--ICADI 100


>gi|90419370|ref|ZP_01227280.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336307|gb|EAS50048.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 217

 Score = 43.3 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           F+++ +   K+ + +       V+++G G G  + +L  L A  V+ +E+D        +
Sbjct: 59  FIMEASPFAKLIQLAAIRPDDVVLDVGCGTGYSSAVLSHL-AGSVVSLEQDPDLAEAATE 117

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             +    RL+ +    ++    + +   +P  +I
Sbjct: 118 NLA----RLDYVTCAVVEGPLNEGYPSEAPFDVI 147


>gi|302342830|ref|YP_003807359.1| GCN5-related N-acetyltransferase [Desulfarculus baarsii DSM 2075]
 gi|301639443|gb|ADK84765.1| GCN5-related N-acetyltransferase [Desulfarculus baarsii DSM 2075]
          Length = 365

 Score = 43.3 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +   +   +++IG G G +   LL+LGA  +VI +E D +         + H N + I+ 
Sbjct: 50  APIAENDVIVDIGCGWGRVINYLLSLGAPNRVIGLELDPEVAADTAARLAPHAN-VSIVC 108

Query: 102 DDA 104
            DA
Sbjct: 109 ADA 111


>gi|301120768|ref|XP_002908111.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262103142|gb|EEY61194.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 280

 Score = 43.3 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 28  NFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           +F  D  I   I            V++IG G G   ++L      KV  +E         
Sbjct: 47  HFFGDEPICH-IVALLDETPNEKKVLDIGTGFGGTARLLAHRSGCKVDALELQPDLSEAG 105

Query: 87  KDISSQHPNRLEIIQ--DDALKVDFEK 111
           ++++ +     ++     D L++   K
Sbjct: 106 RELTRRCGLNDQVSHLSGDFLELPIRK 132


>gi|239943189|ref|ZP_04695126.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239989646|ref|ZP_04710310.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
 gi|291446662|ref|ZP_06586052.1| L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291349609|gb|EFE76513.1| L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 379

 Score = 43.3 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++       DG  V+EIG G G +  +L    G   V  +E D        +  +
Sbjct: 93  PSMVARMLGLLDVEDGQRVLEIGTGTGYVAALLCERLGDDLVHSVELDPSVARRAAEALA 152

Query: 92  QHPNRLEIIQDD 103
           Q   R  +   D
Sbjct: 153 QSGYRPHLRVGD 164


>gi|300868529|ref|ZP_07113148.1| hypothetical protein OSCI_3720055 [Oscillatoria sp. PCC 6506]
 gi|300333518|emb|CBN58336.1| hypothetical protein OSCI_3720055 [Oscillatoria sp. PCC 6506]
          Length = 254

 Score = 43.3 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I   +  L    V+EIG G G LT +L      ++  I+ D ++     +       +
Sbjct: 40  RAIYRIAPDLPLKEVLEIGGGQGGLTALLYPQA--QITNIDLDPKYA----NAPCNQQEK 93

Query: 97  LEIIQDDA--LKVDFEKF 112
           +  I  DA  L  D E F
Sbjct: 94  VRFICGDATNLPFDNESF 111


>gi|261250314|ref|ZP_05942890.1| predicted O-methyltransferase [Vibrio orientalis CIP 102891]
 gi|260939430|gb|EEX95416.1| predicted O-methyltransferase [Vibrio orientalis CIP 102891]
          Length = 215

 Score = 43.3 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHP--NRLEI 99
           +       +++IG G G L+ M     A   I  IE D       +   +Q P  +R+++
Sbjct: 14  AKLEASKNLLDIGTGTGLLSLMCAQRNASLTIDAIEIDSNALQAAQSNFAQSPWSDRIQL 73

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
              D L   F   F+      II N PY   
Sbjct: 74  HSGDVLTRPFHGKFDT-----IICNPPYFNS 99


>gi|207722022|ref|YP_002252460.1| hypothetical protein 1177; methyltransferase small [Ralstonia
           solanacearum MolK2]
 gi|206587196|emb|CAQ17780.1| conserved hypothetical protein 1177; methyltransferase small
           [Ralstonia solanacearum MolK2]
          Length = 406

 Score = 43.3 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRL 97
             ++         +IG G G L  +L   G ++V+  ++D +     ++  +     +R+
Sbjct: 220 VANAPLPSQALAFDIGTGTGVLAAVLAKRGVKRVVGTDQDARALVCARENLACLGLQSRV 279

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+I+ D         F       I+ N P+
Sbjct: 280 EVIEAD--------LFPEGRAPLIVCNPPW 301


>gi|33603435|ref|NP_890995.1| putative protein-L-isoaspartate O-methyltransferase [Bordetella
           bronchiseptica RB50]
 gi|33577559|emb|CAE34824.1| putative protein-L-isoaspartate O-methyltransferase [Bordetella
           bronchiseptica RB50]
          Length = 226

 Score = 43.3 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QN L    I  ++A+         V+EIG G G     LL   A++V  +E D +     
Sbjct: 69  QNMLA-PKIEARLAQELLLQPTDCVLEIGTGSGY-QAALLAHLAQQVTTVEIDSRLATFA 126

Query: 87  KDISS 91
           +    
Sbjct: 127 QQNLQ 131


>gi|93004808|ref|YP_579259.1| hypothetical protein Pcryo_2496 [Psychrobacter cryohalolentis K5]
 gi|92395370|gb|ABE76273.1| hypothetical protein Pcryo_2496 [Psychrobacter cryohalolentis K5]
          Length = 488

 Score = 43.3 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 12/114 (10%)

Query: 25  MGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTL--------GARKVI 74
           +GQ F+   ++ + +A            +++ GAG G LT   L              V 
Sbjct: 27  LGQ-FMTPSSVARFMASLFPPSNIKTCRLLDAGAGIGTLTCAFLDRWKANGFGFNDVDVT 85

Query: 75  VIEKDQQFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNISSPIRIIANLPY 127
             E D++    L    + + +    I  DD +K+  +K         +I N PY
Sbjct: 86  AFEIDKKLTNYLSQHLNSYDHVTTRIFSDDYIKLATDKGLQDQGYTHVILNPPY 139


>gi|330927282|ref|XP_003301816.1| hypothetical protein PTT_13408 [Pyrenophora teres f. teres 0-1]
 gi|311323199|gb|EFQ90090.1| hypothetical protein PTT_13408 [Pyrenophora teres f. teres 0-1]
          Length = 504

 Score = 43.3 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNR 96
           I +++    G TV+++G G G L+      GA+KV  ++         K+I ++    +R
Sbjct: 185 IEKNAEIFAGKTVLDVGCGTGILSLFCARAGAKKVFAVDN-SGIVTRAKEIIAKNGFQDR 243

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIA 123
           +E++Q      + E+         II+
Sbjct: 244 IEVVQGRVEDFNTERLIGKEKVDIIIS 270


>gi|332158097|ref|YP_004423376.1| protein-l-isoaspartate methyltransferase - like protein [Pyrococcus
           sp. NA2]
 gi|331033560|gb|AEC51372.1| protein-l-isoaspartate methyltransferase - like protein [Pyrococcus
           sp. NA2]
          Length = 253

 Score = 43.3 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD--ISSQHP 94
           I   +G   G  ++E G G G LT  L  +     +++  E  + F  +  +    +   
Sbjct: 85  IVAYAGVSPGDFIVEAGVGSGALTLFLANIVGPEGRIVSYEIREDFAKLAWENIKWAGFD 144

Query: 95  NRLEIIQDDALKVDFEK-----FFNISSPIRII 122
           +R+ I   D  +   E+       ++  P R++
Sbjct: 145 DRVTIKLKDIYQGIDEENVDHVILDLPEPERVV 177


>gi|332289281|ref|YP_004420133.1| protein-L-isoaspartate O-methyltransferase [Gallibacterium anatis
           UMN179]
 gi|330432177|gb|AEC17236.1| protein-L-isoaspartate O-methyltransferase [Gallibacterium anatis
           UMN179]
          Length = 207

 Score = 43.3 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+           V+EIG G G  T +L  L A+++  +E+       L+  +  
Sbjct: 60  PYIVAKMTALLQLQPTDKVLEIGTGSGYQTAILAKL-AQQIFSVER----IKSLQWQAMH 114

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWESL 150
              +LE+        D  +     +P    I+   P  I T LL                
Sbjct: 115 RFKKLELHNIRLKHGDGWEGLKGHAPFNAIIVTAAPSTIPTALLQQLADGGRLVLPVGEE 174

Query: 151 TLLFQK 156
             + Q+
Sbjct: 175 QQILQR 180


>gi|307325493|ref|ZP_07604695.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Streptomyces violaceusniger Tu 4113]
 gi|306888962|gb|EFN19946.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Streptomyces violaceusniger Tu 4113]
          Length = 417

 Score = 43.3 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
            G   G  V +IGAG G         GA  VI +++D         ++ +   +L+++Q 
Sbjct: 266 IGPRPGDLVWDIGAGSGAAAVETAGFGA-AVITVDRDPDACERTDTLARRFGVQLQVVQG 324

Query: 103 DALKVDFEKFFNISSPIRI 121
               V  E   ++  P  +
Sbjct: 325 ----VAPEVLEDLPEPDAV 339


>gi|290559631|gb|EFD92959.1| NUDIX hydrolase [Candidatus Parvarchaeum acidophilus ARMAN-5]
          Length = 385

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 15/117 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            V+EIG G G LT ++L    + V ++E +  F  IL         R+  I   A K   
Sbjct: 202 PVLEIGPGYGRLTDLIL-RNFKTVDLLELNPDFRTILMKRFGH---RINFIDGVAEKFKT 257

Query: 110 EKFFN----------ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
            K +N          I  P   I N+   +    +F  ++ D     W  +   ++K
Sbjct: 258 NKKYNTIVCAEVIEHIKDPYSFIGNIRSALSKDGVF-ILTLDNTESAWRKVRDSYRK 313


>gi|284924676|emb|CBG27870.1| conserved hypothetical protein [Escherichia coli]
          Length = 187

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQH 93
           +  ++   +   +   ++E  AG G + + +       +   +E +      L++     
Sbjct: 38  VCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVRYLRENF--- 94

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
            N + +   D ++    ++++     RII N P+ I  + + + + A
Sbjct: 95  -NGVRVQCGDFMEWQPVQYYS-----RIIMNPPF-IHGQDIRHILRA 134


>gi|328554346|gb|AEB24838.1| AdoMet-dependent methyltransferase [Bacillus amyloliquefaciens
           TA208]
 gi|328912750|gb|AEB64346.1| putative AdoMet-dependent methyltransferase [Bacillus
           amyloliquefaciens LL3]
          Length = 213

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            NIL  I      L G  V+E G G GNLT   L    +KV  +E       +  D  S 
Sbjct: 35  DNILDSIVA----LSGSNVLEFGPGTGNLTAK-LAAAKKKVFGVEPSPSMRKLAADKLS- 88

Query: 93  HPNRLEIIQDDALKVDFEKF 112
             +R      D L+     F
Sbjct: 89  --DRAVFSDGDFLEFPAPPF 106


>gi|327192466|gb|EGE59420.1| putative L-isoaspartyl protein carboxyl methyltransferase protein
           [Rhizobium etli CNPAF512]
          Length = 738

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +       V+E+G G G     L++  AR V  +E+ ++     ++   +
Sbjct: 141 PFIVALMIEKADLEADDKVLEVGTGSGY-ASALISRIARHVYSVERHERLALQARERFER 199

Query: 93  H-PNRLEIIQDD 103
                +++   D
Sbjct: 200 LGYGNIDVRVGD 211


>gi|294139498|ref|YP_003555476.1| hypothetical protein SVI_0727 [Shewanella violacea DSS12]
 gi|293325967|dbj|BAJ00698.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 250

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 51/164 (31%), Gaps = 8/164 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEII 100
           +       V++IGAG G L+ M     A  +  IE D+      +    +S    RL I 
Sbjct: 37  APLTRAQNVLDIGAGSGLLSLMAAQRSAATITAIELDETAASACERNFKASNWGERLVIE 96

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP---FWESLTLLFQKE 157
           +        ++         II N PY  G     N + A         +  L     + 
Sbjct: 97  ECAIQDFAQQRLNTQIKFDHIICNPPYFKGGTQSKNQLRAKARHTDTLDFSCLIKAMTRL 156

Query: 158 VGERITAQ---KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +    TA     +      L  LT      T + DI+       
Sbjct: 157 LAVDGTASLILPSQSMPCFLEELTQSELTMTRVMDIADSAAKKP 200


>gi|156937670|ref|YP_001435466.1| protein-L-isoaspartate O-methyltransferase [Ignicoccus hospitalis
           KIN4/I]
 gi|209573190|sp|A8AAV7|PIMT_IGNH4 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|156566654|gb|ABU82059.1| protein-L-isoaspartate O-methyltransferase [Ignicoccus hospitalis
           KIN4/I]
          Length = 211

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDIS 90
            +++  + E++    G  V+E+G G G    ++  L      V  IE+  +     ++  
Sbjct: 61  PHMVAYMVEAAELRRGDKVLEVGTGSGYHAAVMAELVGPEGHVYTIERIPELAERARERL 120

Query: 91  SQH-PNRLEIIQDD 103
                N + ++  D
Sbjct: 121 KALGYNNVTVLVGD 134


>gi|154490353|ref|ZP_02030614.1| hypothetical protein PARMER_00586 [Parabacteroides merdae ATCC
           43184]
 gi|154088964|gb|EDN88008.1| hypothetical protein PARMER_00586 [Parabacteroides merdae ATCC
           43184]
          Length = 257

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  I +         ++EIG G G   +  L LG  +V  I+ +     I K+I S 
Sbjct: 21  KYVIPFIEKHKPITADSHILEIGCGEGGNIKPFLDLGC-QVTGIDINGGQIAIAKEIYSV 79

Query: 93  HPN--RLEIIQDDALKVD--FEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           HPN   L +I +D  KV     KF  I     I       +    +  ++S  
Sbjct: 80  HPNNRNLTLICEDIYKVTELHNKFDIIIIRDVIEHIPNQELFLPFIKRFLSPH 132


>gi|111221382|ref|YP_712176.1| hypothetical protein FRAAL1944 [Frankia alni ACN14a]
 gi|111148914|emb|CAJ60593.1| conserved hypothetical protein; putative SAM domain [Frankia alni
           ACN14a]
          Length = 161

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++E+G G G  T++L+ L    +  +E D++   +L         R+ I+  DA ++  E
Sbjct: 1   MLELGPGFGATTRVLVNLTP-SLTALEIDEKSARLLD---GSLGERVRILHGDATRIPAE 56

Query: 111 K 111
            
Sbjct: 57  D 57


>gi|168178341|ref|ZP_02613005.1| precorrin-6Y C5,15-methyltransferase , CbiT subunit [Clostridium
           botulinum NCTC 2916]
 gi|182670900|gb|EDT82874.1| precorrin-6Y C5,15-methyltransferase , CbiT subunit [Clostridium
           botulinum NCTC 2916]
          Length = 191

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS 90
           D+ IL          +   ++++GAG G+++     +  + +VI IEKD++   I+K   
Sbjct: 20  DIRILS--IAKMNLEENSKILDVGAGTGSISIQAAKICEKGQVIAIEKDEEALDIIKKNK 77

Query: 91  SQHP-NRLEIIQDDALKVD 108
                  L+II+ +AL+V+
Sbjct: 78  ENFNCENLKIIEGEALEVE 96


>gi|149924934|ref|ZP_01913264.1| hypothetical protein PPSIR1_34647 [Plesiocystis pacifica SIR-1]
 gi|149814202|gb|EDM73815.1| hypothetical protein PPSIR1_34647 [Plesiocystis pacifica SIR-1]
          Length = 272

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGN-LTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94
           + I  +     G+TV +IGAG G  LT +   LG   K+  ++    F   L+   +   
Sbjct: 103 EAIVAAMALEPGMTVADIGAGTGAFLTTLSAPLGPEGKLYAVDIAPPFLEHLRGRVADEG 162

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            + +E+++              S  +  + ++ ++I   
Sbjct: 163 LSNVEVVEG---TTTETGLPPGSVDVLFVCDVYHHIEYP 198


>gi|153002035|ref|YP_001367716.1| methyltransferase small [Shewanella baltica OS185]
 gi|262828685|sp|A6WS64|TRMN6_SHEB8 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|151366653|gb|ABS09653.1| methyltransferase small [Shewanella baltica OS185]
          Length = 238

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +      TV++IGAG G L+ M        +  +E D       +      P  NRL ++
Sbjct: 30  AQLTAAKTVLDIGAGSGLLSLMAAQRSQAHITSVELDTSAAEACQHNFHNSPWANRLTLV 89

Query: 101 Q---DDAL-KVDFEKFFNISSPIRIIANLPY 127
                D   +++++++F+      II N PY
Sbjct: 90  NSSIQDFCQQIEYQEYFD-----HIICNPPY 115


>gi|160876751|ref|YP_001556067.1| methyltransferase small [Shewanella baltica OS195]
 gi|262828688|sp|A9L1L1|TRMN6_SHEB9 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|160862273|gb|ABX50807.1| methyltransferase type 12 [Shewanella baltica OS195]
 gi|315268951|gb|ADT95804.1| methyltransferase small [Shewanella baltica OS678]
          Length = 238

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +      TV++IGAG G L+ M        +  +E D       +      P  NRL ++
Sbjct: 30  AQLTAAKTVLDIGAGSGLLSLMAAQRSQAHITSVELDTSAAEACQHNFHNSPWANRLTLV 89

Query: 101 Q---DDAL-KVDFEKFFNISSPIRIIANLPY 127
                D   +++++++F+      II N PY
Sbjct: 90  NSSIQDFCQQIEYQEYFD-----HIICNPPY 115


>gi|328885737|emb|CCA58976.1| Protein-L-isoaspartate O-methyltransferase 1 [Streptomyces
           venezuelae ATCC 10712]
          Length = 437

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 41  ESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           ++     G   +E+G GPG +L       G      +E+D       +          E+
Sbjct: 156 QAMELGSGQRYLELGPGPGVSLALAAAITGPGLATGVERDGHMAAFAQRNLDHLGVGAEV 215

Query: 100 IQDDALK 106
           I+ DAL+
Sbjct: 216 IEGDALE 222


>gi|302545194|ref|ZP_07297536.1| protein-L-isoaspartate O-methyltransferase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462812|gb|EFL25905.1| protein-L-isoaspartate O-methyltransferase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 420

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  + ++     G  V+E+G G G     LL   A  V+ +E D +          +
Sbjct: 142 QGVVVDMLDALLLEPGQRVLELGTGTG-WNAALLARRAGSVVSVEVDTELAAAAAGRLER 200

Query: 93  HPNRLEIIQDD 103
               +++   D
Sbjct: 201 AGADVDVRVAD 211


>gi|148655904|ref|YP_001276109.1| hypothetical protein RoseRS_1769 [Roseiflexus sp. RS-1]
 gi|148568014|gb|ABQ90159.1| hypothetical protein RoseRS_1769 [Roseiflexus sp. RS-1]
          Length = 200

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +       V++IGAG   L + L  +  R+V  +E++      +  +   +PN L +I  
Sbjct: 23  AQVGADDVVVDIGAGDLRLARQLAQM-VRRVYAVERNCDLVQRVLPLLEPYPN-LVVINV 80

Query: 103 DAL 105
           DAL
Sbjct: 81  DAL 83


>gi|114321787|ref|YP_743470.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228181|gb|ABI57980.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 220

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NR 96
           +I ++     G   +EIG G G L   L  + A  V V   D +     + I      + 
Sbjct: 71  RILQALAPEPGERALEIGTGSGFLAACLARMAASVVSVEIHD-ELVQRARTIHQARGIDN 129

Query: 97  LEIIQDDA 104
           + + Q DA
Sbjct: 130 VTVQQGDA 137


>gi|302545244|ref|ZP_07297586.1| putative methyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302462862|gb|EFL25955.1| putative methyltransferase [Streptomyces himastatinicus ATCC 53653]
          Length = 384

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           +  +AE+          +IG G G L  +L   G  +V+  ++D++     ++  ++   
Sbjct: 194 VDLVAEAPLPASRAAAFDIGTGSGVLAAVLARRGIERVVATDQDERALACARENVARLGL 253

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             R+E+++ D         F       I+ N P+
Sbjct: 254 AERVEVVRAD--------LFPPGRAPLIVCNPPW 279


>gi|124028185|ref|YP_001013505.1| methyltransferase [Hyperthermus butylicus DSM 5456]
 gi|123978879|gb|ABM81160.1| predicted Methyltransferase [Hyperthermus butylicus DSM 5456]
          Length = 198

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFF--PILK 87
           +D    + + E +   +  TV+++G G G +   L     R  V++++ + +      L 
Sbjct: 41  VDEGT-RLLIEHAIVPEEGTVLDMGCGYGAIGITLAKAHPRLHVVMVDVNPKAVELARLN 99

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              +   NR+E++Q D  +      F+      II+N P   G +++   I    
Sbjct: 100 ARHNGVENRVEVLQGDLYEPVKGYHFD-----AIISNPPLAAGMKIIEKLILEAP 149


>gi|320101474|ref|YP_004177066.1| type 11 methyltransferase [Desulfurococcus mucosus DSM 2162]
 gi|319753826|gb|ADV65584.1| Methyltransferase type 11 [Desulfurococcus mucosus DSM 2162]
          Length = 160

 Score = 42.9 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           +++++   +G+ +G  V ++G G G  L   +     RK + +E+D +     +   S+ 
Sbjct: 14  VVREMLRLAGAGEGDVVYDLGCGDGRILIVAVKEFNVRKAVGVERDSERIKEARRRISEE 73

Query: 94  --PNRLEIIQDDALKVDFEK 111
              +R  ++Q D  +VD  +
Sbjct: 74  GIEDRAIVVQGDFFEVDISE 93


>gi|258651859|ref|YP_003201015.1| type 11 methyltransferase [Nakamurella multipartita DSM 44233]
 gi|258555084|gb|ACV78026.1| Methyltransferase type 11 [Nakamurella multipartita DSM 44233]
          Length = 252

 Score = 42.9 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH 93
          +  ++A+    + G   +++G GPG LT  L+   G  +V  I+    F    +D     
Sbjct: 21 LADRLADLLEPVPGARALDVGCGPGALTARLVERLGPDQVCAIDPSAPFVAAARDRFPGL 80

Query: 94 PNR 96
            R
Sbjct: 81 DVR 83


>gi|114705401|ref|ZP_01438309.1| ribosomal RNA adenine methylase transferase [Fulvimarina pelagi
           HTCC2506]
 gi|114540186|gb|EAU43306.1| ribosomal RNA adenine methylase transferase [Fulvimarina pelagi
           HTCC2506]
          Length = 192

 Score = 42.9 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
              +   V+E+G G G +T+ L+  G  +  +I++E   +F  +L+        R  +IQ
Sbjct: 43  NFEESSAVLELGPGTGVVTECLIERGVPESSLILVEYSAEFCALLRRRFP----RATVIQ 98

Query: 102 DDALKV 107
            DA  +
Sbjct: 99  GDAYAI 104


>gi|3282093|emb|CAA07516.1| hypothetical protein [Thermotoga neapolitana]
          Length = 258

 Score = 42.9 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  V+++G G G L  +   LGA  V+ ++ D+Q   + K+   ++   + + + D 
Sbjct: 121 LKKGDRVVDVGCGTGILAIVAKKLGASYVLAVDVDEQAVEVAKENVQKNSVDVTVKRSDL 180

Query: 105 L 105
           L
Sbjct: 181 L 181


>gi|327192687|gb|EGE59625.1| putative SAM-dependent methyltransferase protein [Rhizobium etli
           CNPAF512]
          Length = 268

 Score = 42.9 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
            + +G  DG  V+++G G G+LT  L    G +++  I+    F             R+ 
Sbjct: 29  IDFAGVADGERVLDVGCGTGSLTFTLAEKPGLQEITAIDYSPVFVEAAMRR--NTDPRIT 86

Query: 99  IIQDDALKVDFEK-FFNISSPIRIIANLP 126
           I Q DA  + FE   F+ +  + ++  +P
Sbjct: 87  IWQADACALPFEDNRFDRAMSLLVLHFVP 115


>gi|77361681|ref|YP_341256.1| hypothetical protein PSHAa2766 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876592|emb|CAI87814.1| conserved protein of unknown function [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 394

 Score = 42.9 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 32/84 (38%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           ++       V+E  AG G+L +ML   GA+ V  IE   Q     +  + Q    +   Q
Sbjct: 109 AALPSSTKPVLEWCAGKGHLGRMLAFNGAKSVHSIELQSQLCEQGQHSAKQQGLAMHFSQ 168

Query: 102 DDALKVDFEKFFNISSPIRIIANL 125
            D LK D   FF        +   
Sbjct: 169 ADVLKDDITDFFKADMHAVALHAC 192


>gi|170289516|ref|YP_001739754.1| ribosomal L11 methyltransferase [Thermotoga sp. RQ2]
 gi|226710126|sp|B1L841|PRMA_THESQ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|170177019|gb|ACB10071.1| ribosomal L11 methyltransferase [Thermotoga sp. RQ2]
          Length = 264

 Score = 42.9 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             +G TV+++G G G L      LGA +V+ ++ D+Q   + ++   ++         D 
Sbjct: 127 LKEGNTVLDVGCGTGILAIAAKKLGASQVVAVDVDEQAVEVAEENVRKND-------VDV 179

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           L    +   ++     I+ +   NI   +    +         +S+ +L
Sbjct: 180 LVKWSDLLSDVEGTFDIVVS---NILAEIHVKLLEDVNRVTHRDSMLIL 225


>gi|169629788|ref|YP_001703437.1| hypothetical protein MAB_2704 [Mycobacterium abscessus ATCC 19977]
 gi|169241755|emb|CAM62783.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 175

 Score = 42.9 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           +EIG G G   ++L      ++  +E D+     L+ +   + +R  ++Q D  K+
Sbjct: 25  LEIGPGYGANLRVLTNRTP-QLTAVEIDETMATRLQRL---YGDRATVMQGDGTKL 76


>gi|91781283|ref|YP_556490.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase
           [Burkholderia xenovorans LB400]
 gi|91693943|gb|ABE37140.1| Protein-L-isoaspartate (D-aspartate) O-methyltransferase
           [Burkholderia xenovorans LB400]
          Length = 684

 Score = 42.9 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E++    G  V++IG G G     +    A +V  IE+D       +D  ++
Sbjct: 64  PVIVAKMLEAAQLHPGDHVLDIGTGSGYA-AAVAGEIAARVDSIERDAALADTAQDRLAR 122

Query: 93  H-PNRLEIIQDD 103
                + +   D
Sbjct: 123 LGYTNVVVHHGD 134


>gi|291453808|ref|ZP_06593198.1| L-isoaspartate(D-aspartate) binding-protein-dependent transport
           lipoprotein [Streptomyces albus J1074]
 gi|291356757|gb|EFE83659.1| L-isoaspartate(D-aspartate) binding-protein-dependent transport
           lipoprotein [Streptomyces albus J1074]
          Length = 356

 Score = 42.9 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +++ ++  +     G  V+EIG G G    L       GA  V+ +E D       +  
Sbjct: 68  PSVVFRMLRALDVRAGQRVLEIGTGTGWNAALLAH--RTGAGNVVTVEVDGAVAERARRA 125

Query: 90  SSQHPNRLEIIQDD 103
                  + ++  D
Sbjct: 126 LRASGAPVRVVHGD 139


>gi|326445249|ref|ZP_08219983.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 384

 Score = 42.9 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDIS 90
              + ++  +     G+ V E G G G  T  L+    G  +V  IE D +     K   
Sbjct: 91  PRAVAEMLAALDLEPGMKVCEAGTGTG-WTAALMEHLTGDGQVTTIEVDPRLALQAKISL 149

Query: 91  SQHPNRLEIIQDDA 104
               +   ++  DA
Sbjct: 150 HAAGHHPHVVTGDA 163


>gi|254448225|ref|ZP_05061687.1| methyltransferase type 11 [gamma proteobacterium HTCC5015]
 gi|198262092|gb|EDY86375.1| methyltransferase type 11 [gamma proteobacterium HTCC5015]
          Length = 138

 Score = 42.9 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95
            K+ E +    G  V+++G G G LT +L     +  +  ++ D           +   +
Sbjct: 37  NKLVELAAPQAGEHVLDVGCGTGTLTYLLAEREQKLHIKGLDADPVQLERANSKVAAIGS 96

Query: 96  RLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGT 131
           ++   Q  A ++ D  + F+    I + +   +++ T
Sbjct: 97  QISFQQGYAQQLPDNAQTFD----IVVSSLFFHHLTT 129


>gi|254392757|ref|ZP_05007929.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
 gi|197706416|gb|EDY52228.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 364

 Score = 42.9 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDIS 90
              + ++  +     G+ V E G G G  T  L+    G  +V  IE D +     K   
Sbjct: 71  PRAVAEMLAALDLEPGMKVCEAGTGTG-WTAALMEHLTGDGQVTTIEVDPRLALQAKISL 129

Query: 91  SQHPNRLEIIQDDA 104
               +   ++  DA
Sbjct: 130 HAAGHHPHVVTGDA 143


>gi|190894647|ref|YP_001984940.1| putative L-isoaspartyl protein carboxyl methyltransferase
           [Rhizobium etli CIAT 652]
 gi|190700308|gb|ACE94390.1| probable L-isoaspartyl protein carboxyl methyltransferase protein
           [Rhizobium etli CIAT 652]
          Length = 632

 Score = 42.9 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +       V+E+G G G     L++  AR V  +E+ ++     ++   +
Sbjct: 35  PFIVALMIEKADLEADDKVLEVGTGSGY-ASALVSRIARHVYSVERHERLALQARERFER 93

Query: 93  H-PNRLEIIQDD 103
                +++   D
Sbjct: 94  LGYGNIDVRVGD 105


>gi|114771847|ref|ZP_01449240.1| protein-L-isoaspartate O-methyltransferase [alpha proteobacterium
           HTCC2255]
 gi|114547663|gb|EAU50554.1| protein-L-isoaspartate O-methyltransferase [alpha proteobacterium
           HTCC2255]
          Length = 211

 Score = 42.9 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           + Q      +++ K+ ++        V+EIG G G     +L+  AR+V  +E+    F 
Sbjct: 60  LSQ-----PSVVAKMTQALNPGPRDKVLEIGTGTG-FQAAVLSQLARRVYTVER----FS 109

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            L   +++  N L ++    +  D        +P   I
Sbjct: 110 KLAQSANKTLNSLGLVNVTVITADGSMGLPNQAPFDRI 147


>gi|83953689|ref|ZP_00962410.1| cyclopropane-fatty-acyl-phospholipid synthase [Sulfitobacter sp.
           NAS-14.1]
 gi|83841634|gb|EAP80803.1| cyclopropane-fatty-acyl-phospholipid synthase [Sulfitobacter sp.
           NAS-14.1]
          Length = 381

 Score = 42.9 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 62/222 (27%), Gaps = 41/222 (18%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             + +  G   G  V+EIG G G   +        KV  +   ++ F   K+        
Sbjct: 154 ASMVDQMGVSAGDHVLEIGCGWGGFAEYAAKERGLKVTCLTISKEQFNYAKERIENAG-- 211

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL--- 153
                 D ++   + + +              I +  +F  +    WP ++ +L      
Sbjct: 212 ----LADVVQFKLQDYRDERGTYD-------GIASIEMFEAVGEQYWPSYFNTLHACLKP 260

Query: 154 -FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP-----KVTSTVIH 207
             Q  +       +    Y R             +F   P    PSP     +V S  + 
Sbjct: 261 GCQATLQIITVPDRRWKVYKRGVDFIQ-----KYIF---PGGMLPSPTMLKQQVESAGLA 312

Query: 208 FIP-----------HLNPIPCCLESLKKITQEAFGKRRKTLR 238
                                  E  ++I +  F +R K + 
Sbjct: 313 VEKSIEFGKSYDVTLRRWHTTFNEKWEEIARMGFDERFKRMW 354


>gi|307319857|ref|ZP_07599281.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83]
 gi|306894588|gb|EFN25350.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83]
          Length = 266

 Score = 42.9 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNR 96
           K  + +G  DG  V+++G G G+LT  L      +++  I+    F       ++    R
Sbjct: 27  KFIDFAGVADGEKVLDVGCGTGSLTFALADAARLKEIAAIDYSPVFVEEATRRNTN--PR 84

Query: 97  LEIIQDDALKVDFEK 111
           ++I + DA  + FE 
Sbjct: 85  IKIREADACALPFED 99


>gi|239981954|ref|ZP_04704478.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces albus J1074]
          Length = 393

 Score = 42.9 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +++ ++  +     G  V+EIG G G    L       GA  V+ +E D       +  
Sbjct: 105 PSVVFRMLRALDVRAGQRVLEIGTGTGWNAALLAH--RTGAGNVVTVEVDGAVAERARRA 162

Query: 90  SSQHPNRLEIIQDD 103
                  + ++  D
Sbjct: 163 LRASGAPVRVVHGD 176


>gi|240143796|ref|ZP_04742397.1| modification methylase CviRI [Roseburia intestinalis L1-82]
 gi|257204208|gb|EEV02493.1| modification methylase CviRI [Roseburia intestinalis L1-82]
          Length = 150

 Score = 42.9 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++E GAG GN+ + L   G   +  +E   +    L+D+       + +I DD L +D  
Sbjct: 1   MLEPGAGSGNIIKTLQKYGDFSIDAVEIRPEEAQHLQDLG------VNVIIDDFLSMDLG 54

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           K +++     II N P+N     +   + 
Sbjct: 55  KKYDL-----IIGNPPFNQAIEFVEKSLG 78


>gi|302562528|ref|ZP_07314870.1| UbiE/COQ5 methyltransferase [Streptomyces griseoflavus Tu4000]
 gi|302480146|gb|EFL43239.1| UbiE/COQ5 methyltransferase [Streptomyces griseoflavus Tu4000]
          Length = 257

 Score = 42.9 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP 94
           +++ +      G TV+++G GPG     L         VI ++ D       ++ ++   
Sbjct: 30  QRLLDLLDIRAGQTVLDVGCGPGTDLPALAERAGDGGTVIGVDHDPAMLLRARERTAGL- 88

Query: 95  NRLEIIQDDA 104
           +R+E+ + DA
Sbjct: 89  DRVEVREGDA 98


>gi|270009702|gb|EFA06150.1| hypothetical protein TcasGA2_TC008994 [Tribolium castaneum]
          Length = 228

 Score = 42.9 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 29  FLLDLNILKKIAESSGS----LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +L+D  + KK            +   V E  AG G ++  LL  G   V + E    F  
Sbjct: 98  YLIDAQVAKKAVTYILPHITKNENQLVCETNAGLGLISGELLDSGVNLVRLYESCPDFKE 157

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
            LK     +  R+E+   D   +   +F +   
Sbjct: 158 HLKTRFKPYKGRVELFTKDLFLLHRYEFIDKQD 190


>gi|237723643|ref|ZP_04554124.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229437991|gb|EEO48068.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 234

 Score = 42.9 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
              +    ++++G G G ++ M+      ++  ++ D       +   +  P  +R+E+ 
Sbjct: 33  VDVVSARNILDVGTGTGLISLMMAQRCNAQIRAVDIDADAVEQARGNVAASPWQDRIEVE 92

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
             D      E  F++     I++N PY
Sbjct: 93  LQDICHFTSETLFDV-----IVSNPPY 114


>gi|212693330|ref|ZP_03301458.1| hypothetical protein BACDOR_02842 [Bacteroides dorei DSM 17855]
 gi|237710069|ref|ZP_04540550.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|212664095|gb|EEB24667.1| hypothetical protein BACDOR_02842 [Bacteroides dorei DSM 17855]
 gi|229456162|gb|EEO61883.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 234

 Score = 42.9 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
              +    ++++G G G ++ M+      ++  ++ D       +   +  P  +R+E+ 
Sbjct: 33  VDVVSARNILDVGTGTGLISLMMAQRCNAQIRAVDIDADAVEQARGNVAASPWQDRIEVE 92

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
             D      E  F++     I++N PY
Sbjct: 93  LQDICHFTSETLFDV-----IVSNPPY 114


>gi|262274926|ref|ZP_06052737.1| predicted O-methyltransferase [Grimontia hollisae CIP 101886]
 gi|262221489|gb|EEY72803.1| predicted O-methyltransferase [Grimontia hollisae CIP 101886]
          Length = 269

 Score = 42.9 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           + + DG T+++IG G G L  M+       ++  ++ D       +  + Q    +R+++
Sbjct: 67  AEAKDGHTILDIGTGTGLLALMMAQRFPTARITALDIDAHAAETARFNAEQSAWHDRIDV 126

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
              D    +    F+      I+ N PY   
Sbjct: 127 HHQDICTWESSAQFDT-----IVCNPPYFTT 152


>gi|170077520|ref|YP_001734158.1| precorrin-6B methylase [Synechococcus sp. PCC 7002]
 gi|169885189|gb|ACA98902.1| Precorrin-6B methylase 2 [Synechococcus sp. PCC 7002]
          Length = 196

 Score = 42.9 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NR 96
           I  +        + +IGAG G ++  +  L  + +VI +E+D++   +++   +    + 
Sbjct: 32  IISALRMEADSVLWDIGAGTGTISVEIALLCPQAQVIAVERDEEVADLVRRNCAHFQTDN 91

Query: 97  LEIIQDDA 104
           + +I+ +A
Sbjct: 92  ITVIEGNA 99


>gi|188583937|ref|YP_001927382.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium populi BJ001]
 gi|179347435|gb|ACB82847.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium populi BJ001]
          Length = 228

 Score = 42.9 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +I+  +  +     G  V+E+G G G +T +L+ LGA  V  +E+    +  L   +  
Sbjct: 76  PSIVAAMLGALDIAPGARVLEVGTGTGYVTALLVQLGAAHVRSLER----YDGLARAARS 131

Query: 93  HPNR 96
           H  R
Sbjct: 132 HLGR 135


>gi|306821075|ref|ZP_07454693.1| ribosomal protein L11 methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550911|gb|EFM38884.1| ribosomal protein L11 methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 319

 Score = 42.9 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDD 103
             G ++I+IG G G L+     LGA+KV+ ++ D+    + K+        N +++   D
Sbjct: 179 KKGDSLIDIGCGSGILSIAAAHLGAQKVVAVDLDRLAVKVSKENVELNGFSNTIDVRYGD 238

Query: 104 ALKVDFEK 111
              V  EK
Sbjct: 239 LTDVIDEK 246


>gi|254393938|ref|ZP_05009036.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294817801|ref|ZP_06776443.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326446491|ref|ZP_08221225.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197707523|gb|EDY53335.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294322616|gb|EFG04751.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 304

 Score = 42.9 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L+ IA   G   G  V++IGAG G+LT  L      +V+ +   +     L + +++   
Sbjct: 68  LRFIARRLGLRGGERVLDIGAGWGSLTCYLAAEYGCEVVAVTPSRVQIDHLTERAARLGL 127

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            +R+   +     +D +  F+  + + +I +LP +
Sbjct: 128 GHRVTTDRRSVYDLDPDGSFDAVALVGVIEHLPDH 162


>gi|108763479|ref|YP_631242.1| UbiE/COQ5 family methlytransferase [Myxococcus xanthus DK 1622]
 gi|108467359|gb|ABF92544.1| methyltransferase, UbiE/COQ5 family [Myxococcus xanthus DK 1622]
          Length = 269

 Score = 42.9 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +G   G  V+++  GPG L  +L      +V  ++   +    L+  +++    ++I++ 
Sbjct: 39  AGVAQGTRVVDVATGPGTL-ALLAARDGARVTAVDFSPEMIAALRGRTAEAKLDVDILEG 97

Query: 103 DALKVDFEK 111
           D + + FE 
Sbjct: 98  DGMALPFEA 106


>gi|40063273|gb|AAR38091.1| protein-L-isoaspartate O-methyltransferase [uncultured marine
           bacterium 578]
          Length = 217

 Score = 42.9 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +L   I  +I +S   +   + +EIG G G  T +L  L  + V  IE  +    + ++ 
Sbjct: 60  MLSPKIEGRILDSLDIIGHESALEIGTGSGYFTSVLAKLC-KSVKSIEVSKVLSKLAEEK 118

Query: 90  SSQHP-NRLEIIQDDALKVDFE 110
            +      + I+  DAL  +F+
Sbjct: 119 INALKFTNVSIVTGDALTYNFD 140


>gi|150015720|ref|YP_001307974.1| ribosomal protein L11 methyltransferase [Clostridium beijerinckii
           NCIMB 8052]
 gi|189037693|sp|A6LRN8|PRMA_CLOB8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|149902185|gb|ABR33018.1| ribosomal protein L11 methyltransferase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 314

 Score = 42.9 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
                TV ++G G G L      LGA+ V+ ++ D       K+ IS  + N +E+++ +
Sbjct: 175 VKPDTTVFDVGCGSGILAIAAAKLGAKHVVGVDLDPVAVDSSKENISFNNLNNIEVLEGN 234

Query: 104 ALKV 107
            L V
Sbjct: 235 LLDV 238


>gi|292655537|ref|YP_003535434.1| protein-L-isoaspartate methyltransferase-like protein [Haloferax
           volcanii DS2]
 gi|291370362|gb|ADE02589.1| protein-L-isoaspartate methyltransferase homolog [Haloferax
           volcanii DS2]
          Length = 241

 Score = 42.9 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           I   +G   G  V++ G G G L+  L  LG   V   E+D +F  + ++    +    R
Sbjct: 75  IVGHTGVAAGERVLDAGTGTGVLSAYLGRLGVD-VTTFERDAEFADVARENMRLAGVEQR 133

Query: 97  LEIIQDDA 104
           +++   D 
Sbjct: 134 VDVRTGDI 141


>gi|257865929|ref|ZP_05645582.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30]
 gi|257872262|ref|ZP_05651915.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10]
 gi|257799863|gb|EEV28915.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30]
 gi|257806426|gb|EEV35248.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10]
          Length = 214

 Score = 42.9 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +IAE +    G +V+E G+G GNLTQ LL  G + V+ IE   +   I K  S  
Sbjct: 35  EQLLAEIAEKA----GQSVVEFGSGTGNLTQALLDQG-KNVLAIEPSPEMRRIAK--SKP 87

Query: 93  HPNRLEIIQDD 103
             +++  +  D
Sbjct: 88  SLSKVTFVDGD 98


>gi|182418466|ref|ZP_02949760.1| ribosomal protein L11 methyltransferase [Clostridium butyricum
           5521]
 gi|237666515|ref|ZP_04526500.1| ribosomal protein L11 methyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377848|gb|EDT75392.1| ribosomal protein L11 methyltransferase [Clostridium butyricum
           5521]
 gi|237657714|gb|EEP55269.1| ribosomal protein L11 methyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 314

 Score = 42.9 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
                TV ++G G G L      LGA+ V+ ++ D       K+    +  + +EI++ +
Sbjct: 175 VEPDTTVFDVGCGSGILAIAGAKLGAKHVVGVDLDPVAVDSAKENVGFNNLDNIEILEGN 234

Query: 104 ALKV 107
            L V
Sbjct: 235 LLDV 238


>gi|168177813|ref|ZP_02612477.1| methlytransferase, homolog [Clostridium botulinum NCTC 2916]
 gi|226947704|ref|YP_002802795.1| methlytransferase [Clostridium botulinum A2 str. Kyoto]
 gi|182670592|gb|EDT82566.1| methlytransferase, homolog [Clostridium botulinum NCTC 2916]
 gi|226841484|gb|ACO84150.1| methlytransferase, homolog [Clostridium botulinum A2 str. Kyoto]
          Length = 196

 Score = 42.9 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++ I   +   +G  V++IG+G G L   L  +      +  I+  +    + K+     
Sbjct: 25  IEYILSKANLKEGDRVLDIGSGTGVLIPYLENIISNNGNIAAIDIAENMLKVSKE--KNK 82

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
            + L+ I  D L+   +  FN
Sbjct: 83  YSNLKFIVGDFLEYKSKNTFN 103


>gi|238062208|ref|ZP_04606917.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Micromonospora sp. ATCC 39149]
 gi|237884019|gb|EEP72847.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Micromonospora sp. ATCC 39149]
          Length = 236

 Score = 42.9 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ    D +  +    + G   G  V+++GAG G  T+ +   GA     +  D    
Sbjct: 38  SFGQ----DRSWRRATRAALGLGPGDRVLDVGAGTGVSTEEMAQSGA---YAVGADLSL- 89

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEK 111
            +L       P  + ++  DAL++ F  
Sbjct: 90  GMLSAGKRSRPA-VPLLAGDALRLPFAD 116


>gi|330951121|gb|EGH51381.1| group 2 family glycosyl transferase [Pseudomonas syringae Cit 7]
          Length = 1543

 Score = 42.9 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD- 102
             L G +V+EIGAG G +++ L  +GA  V+ +E   +   I    +    N + ++ + 
Sbjct: 81  HLLKGKSVLEIGAGCGAISRYLGEVGAN-VLALEGSPRRAAIAASRTRDL-NNVTVLAER 138

Query: 103 -DALKVDFE 110
            D LK+D +
Sbjct: 139 FDDLKIDQQ 147


>gi|313127172|ref|YP_004037442.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
 gi|312293537|gb|ADQ67997.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
          Length = 238

 Score = 42.9 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 17/189 (8%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP--ILK 87
           L+D    + + ++ G ++   V+EI  G G  T ML   GA  ++ ++  +        K
Sbjct: 27  LIDHREKQAVLDAVGPVEDKDVLEIACGTGRFTVMLAERGAD-IVGLDISRAMMQQGREK 85

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG---TRLLFNWISADTWP 144
              +   + +E ++ DA ++     F       + A   +++     + L          
Sbjct: 86  ARRAGVADHVEFLRGDAARLP----FPDDHFDAVFAMRFFHLADTPAKFLAEMARVSKDV 141

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHY------GRLSVLTGWRTKATMMFDISPHVFFPS 198
            F+++      + V         S  Y      G LS      T AT  F +   ++   
Sbjct: 142 VFFDTFNDTSAR-VVYNWLLPMGSRLYGEEEVDGLLSDAGLKLTDATHDFVLPYGLYRKI 200

Query: 199 PKVTSTVIH 207
           P   +  + 
Sbjct: 201 PNGIAGELR 209


>gi|222085772|ref|YP_002544302.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium
           radiobacter K84]
 gi|221723220|gb|ACM26376.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium
           radiobacter K84]
          Length = 223

 Score = 42.9 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL++ + L K+ +         V+++G G G ++  LL++ A KV+ +E D+      K 
Sbjct: 66  FLMEASPLAKLLQLGAITKEDKVLDVGCGTGYVS-ALLSILAGKVVALESDEALAATAKT 124

Query: 89  ISSQHP-NRLEIIQD 102
             +    + + ++  
Sbjct: 125 NLAALGHDNVTVVTG 139


>gi|170692040|ref|ZP_02883204.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia graminis C4D1M]
 gi|170143324|gb|EDT11488.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia graminis C4D1M]
          Length = 217

 Score = 42.9 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L    +  +  +        +V+EIGAG G +   LL   A+ V+ ++ + +   +
Sbjct: 57  GQHMLA-PRVEARTLQELAVKKHESVLEIGAGSGYM-AALLAHRAQHVLTVDIEPELAEL 114

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            +     +     ++  +    D  + ++ ++P  +I  
Sbjct: 115 ARTNLIANG----VLNAEVATGDAARGWSAAAPYDVICV 149


>gi|258648434|ref|ZP_05735903.1| SAM-dependent methyltransferase [Prevotella tannerae ATCC 51259]
 gi|260851184|gb|EEX71053.1| SAM-dependent methyltransferase [Prevotella tannerae ATCC 51259]
          Length = 232

 Score = 42.9 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +       +++IG G G +  ML       +  IE D       ++  +  P  +RL+I+
Sbjct: 32  ANVKGKRRILDIGTGSGLIALMLAQRTDAMITGIEIDPASAAQAQENVAASPWADRLQIV 91

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
             D       + F++     I++N P+
Sbjct: 92  ATDIAGYTSYQAFDL-----IVSNPPF 113


>gi|118477001|ref|YP_894152.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|229183736|ref|ZP_04310956.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus BGSC 6E1]
 gi|118416226|gb|ABK84645.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|228599779|gb|EEK57379.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus BGSC 6E1]
          Length = 258

 Score = 42.9 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +K+ +S  S+    +++IG G G  T+ L  +GA+ V+ I+  ++     K+  S   N 
Sbjct: 24  RKMIKSITSIQNKRIVDIGCGGGIYTKELALMGAKSVVGIDFSKEILQAAKENCSGFSN- 82

Query: 97  LEIIQDDA 104
           +  I  DA
Sbjct: 83  ISFIHGDA 90


>gi|85702997|ref|ZP_01034101.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Roseovarius sp.
           217]
 gi|85671925|gb|EAQ26782.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Roseovarius sp.
           217]
          Length = 423

 Score = 42.9 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 26  GQNFLLDLNILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           GQN L    I K   + +  G   G  V+EIG G G   +        +V  +    +  
Sbjct: 183 GQNSLEQAQIAKYASMVDQMGVKPGDHVLEIGCGWGGFAEYAAKERGLRVTGLTISAEQL 242

Query: 84  PILKDISSQ--HPNRLEIIQDD 103
              +D  ++    +R+ +   D
Sbjct: 243 KYARDRMARAGLSDRVTLKLQD 264


>gi|306825048|ref|ZP_07458390.1| methyltransferase domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432484|gb|EFM35458.1| methyltransferase domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 196

 Score = 42.9 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 58/144 (40%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +G+N  FL D  +  KK+ +              G TV+++G G G L   L      + 
Sbjct: 24  LGENMTFLTDAGVFSKKMVDFGSQLLLKCLEVNKGETVLDVGCGYGPLGLSLTKAYGVQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++     I Q +  +    KF        +I+N P   G ++
Sbjct: 84  TMVDINNRALDLARQNAERNKVEATIFQSNIYEQVEGKF------DHVISNPPIRAGKQV 137

Query: 134 LFNWIS-ADTWPPFWESLTLLFQK 156
           +   I  +  +      LT++ QK
Sbjct: 138 VHEIIEKSRDFLKDGGDLTIVIQK 161


>gi|300311844|ref|YP_003775936.1| methylase of polypeptide chain release factors protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074629|gb|ADJ64028.1| methylase of polypeptide chain release factors protein
           [Herbaspirillum seropedicae SmR1]
          Length = 395

 Score = 42.9 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              +         +IG G G L+ +L   G RK++  + D +     +    Q     ++
Sbjct: 208 VAQAALPSTELAFDIGVGSGVLSAVLAQRGVRKIVATDMDPRALACARQNLQQLGLHQQV 267

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
                 ++     F       ++ N P+
Sbjct: 268 ------QLQEADLFPEGRAPLVVCNPPW 289


>gi|302879747|ref|YP_003848311.1| methyltransferase small [Gallionella capsiferriformans ES-2]
 gi|302582536|gb|ADL56547.1| methyltransferase small [Gallionella capsiferriformans ES-2]
          Length = 376

 Score = 42.9 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 44  GSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                 +V  +IG G G L  +L   G R +   ++D++     +D  ++    ++++Q 
Sbjct: 193 DLTKTQSVAFDIGTGTGVLAAVLAKRGIRHITATDQDERALACARDNLTRLKCTIDVVQA 252

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D         F       I+ N P+
Sbjct: 253 D--------LFPEGRAALIVCNPPW 269


>gi|315230979|ref|YP_004071415.1| protein-L-isoaspartate O-methyltransferase [Thermococcus barophilus
           MP]
 gi|315184007|gb|ADT84192.1| protein-L-isoaspartate O-methyltransferase [Thermococcus barophilus
           MP]
          Length = 241

 Score = 42.9 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + E +   +G+ V+EIG G G    ++  L  R V  IE+  +     K    +
Sbjct: 86  PHMVAIMLEVADLKEGMNVLEIGTGSGWNAALIYELVKRDVYTIERIPELVEFAKRNLEE 145

Query: 93  --HPNRLEIIQDDALK 106
             + +++ +I  D  K
Sbjct: 146 AGYKDKVHVILGDGTK 161


>gi|38605120|sp|O86951|PRMA_THENE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
          Length = 264

 Score = 42.9 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  V+++G G G L  +   LGA  V+ ++ D+Q   + K+   ++   + + + D 
Sbjct: 127 LKKGDRVVDVGCGTGILAIVAKKLGASYVLAVDVDEQAVEVAKENVQKNSVDVTVKRSDL 186

Query: 105 L 105
           L
Sbjct: 187 L 187


>gi|319949275|ref|ZP_08023355.1| S-adenosylmethionine-dependent methyltransferase [Dietzia cinnamea
           P4]
 gi|319437065|gb|EFV92105.1| S-adenosylmethionine-dependent methyltransferase [Dietzia cinnamea
           P4]
          Length = 279

 Score = 42.9 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL       KV   E  +         ++  
Sbjct: 88  AAQIVHEGDVFPGARVLEAGAGSGALTCSLLRAVGPEGKVFSYEIREDHAEHAERNVRTF 147

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             +HP   ++   D  +   E        + +    P+
Sbjct: 148 YGEHPGNWDLRVADLAETSVEALGGQVDRVVLDMLAPW 185


>gi|304391791|ref|ZP_07373733.1| protein-L-isoaspartate O-methyltransferase [Ahrensia sp. R2A130]
 gi|303296020|gb|EFL90378.1| protein-L-isoaspartate O-methyltransferase [Ahrensia sp. R2A130]
          Length = 220

 Score = 42.9 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
              +   ++ +++      TV+EIG G G  T  LL    +KV  I++ +      KD  
Sbjct: 67  HSPDTTIRMLDAARLHAKNTVLEIGTGGGYQT-ALLARMTKKVHSIDRYRMLITRAKDKL 125

Query: 91  SQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           ++     +   Q D LK+      N +   RII ++ ++   R L + +++ 
Sbjct: 126 ARLQLTNVTFDQADGLKLGE----NGALYDRIICDMSFDSMPRFLLDSLASG 173


>gi|285019261|ref|YP_003376972.1| cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas
           albilineans GPE PC73]
 gi|283474479|emb|CBA16980.1| putative cyclopropane-fatty-acyl-phospholipid synthase protein
           [Xanthomonas albilineans]
          Length = 358

 Score = 42.9 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 8/138 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRL 97
           AE +   DG  ++E+G G G+LT  +     GAR   V     Q   IL    ++  + +
Sbjct: 125 AERAQLHDGQRILELGCGWGSLTLWMAEQYPGARITAVSNSRPQREHILAQCRARGQDNV 184

Query: 98  EIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           ++I  DA  L +    +  + S         Y      + NW+     P     + +   
Sbjct: 185 KVITHDANTLTLPAASYDRVVSIEMFEHMRNYRELLARISNWL----VPDGQLFVHIFCH 240

Query: 156 KEVGERITAQKNSPHYGR 173
           +++      Q      GR
Sbjct: 241 RDLAYPFEVQGEDNWMGR 258


>gi|265753718|ref|ZP_06089073.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235432|gb|EEZ20956.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 234

 Score = 42.9 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
              +    ++++G G G ++ ++      ++  ++ D       +   +  P  +R+E+ 
Sbjct: 33  VDVVSARNILDVGTGTGLISLIMAQRCNAQIRAVDIDADAVEQARGNVAASPWQDRIEVE 92

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
             D      E  F++     I++N PY
Sbjct: 93  LQDICHFTSETLFDV-----IVSNPPY 114


>gi|217967776|ref|YP_002353282.1| protein-L-isoaspartate O-methyltransferase [Dictyoglomus turgidum
           DSM 6724]
 gi|226702493|sp|B8E0T1|PIMT_DICTD RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|217336875|gb|ACK42668.1| protein-L-isoaspartate O-methyltransferase [Dictyoglomus turgidum
           DSM 6724]
          Length = 220

 Score = 42.9 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             I+  + E+        V+EIG G G  T +L  L A++V  IE+ ++     K  
Sbjct: 70  PYIVALMTEALDLKGDEKVLEIGTGSGYQTAILAEL-AKEVYTIERIRELSEEAKKR 125


>gi|257875556|ref|ZP_05655209.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20]
 gi|257809722|gb|EEV38542.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20]
          Length = 214

 Score = 42.9 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +IAE +    G +V+E G+G GNLTQ LL  G + V+ IE   +   I K  S  
Sbjct: 35  EQLLAEIAEKA----GQSVVEFGSGTGNLTQALLDQG-KNVLAIEPSPEMRRIAK--SKP 87

Query: 93  HPNRLEIIQDD 103
             +++  +  D
Sbjct: 88  SLSKVTFVDGD 98


>gi|194440082|ref|ZP_03072136.1| adenine-specific DNA methylase [Escherichia coli 101-1]
 gi|194420967|gb|EDX37000.1| adenine-specific DNA methylase [Escherichia coli 101-1]
          Length = 155

 Score = 42.9 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQH 93
           +  ++   +   +   ++E  AG G + + +       +   +E +      L++     
Sbjct: 6   VCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVESNSGLVRYLRENF--- 62

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            N + +   D ++    ++++     RII N P++ G  +
Sbjct: 63  -NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 96


>gi|150398806|ref|YP_001322573.1| type 12 methyltransferase [Methanococcus vannielii SB]
 gi|150011509|gb|ABR53961.1| Methyltransferase type 12 [Methanococcus vannielii SB]
          Length = 283

 Score = 42.9 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 20  IPKKYMGQNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
              K   +N L +  I K +     +    +  +++EIG GPG  T  L     ++V VI
Sbjct: 30  SFSKNYAKNVLKNERIEKNMNYFKNNFELDENTSILEIGPGPGTYTIPLAKE-VKEVTVI 88

Query: 77  EKDQQFFPILKDISSQHP-NRLEIIQD---------DALKVD 108
           E+      ILK+   +     + II           D L  D
Sbjct: 89  EQSTGMIDILKNRMEEEGLTNINIINKRWDDVQLGNDFLNHD 130


>gi|221639714|ref|YP_002525976.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           KD131]
 gi|221160495|gb|ACM01475.1| Magnesium protoporphyrin O-methyltransferase BchM [Rhodobacter
           sphaeroides KD131]
          Length = 228

 Score = 42.9 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEI 99
                L G+ V++ G G G +T  L   GA +V+ ++   Q   I +    + H +R+  
Sbjct: 59  RLPKDLTGLRVLDAGCGAGQMTAELAARGA-QVMAVDISPQLVEIARKRLPAAHQDRVTF 117

Query: 100 IQDDALKVDFEKF 112
              D L  D  +F
Sbjct: 118 ASGDMLADDLGRF 130


>gi|315505979|ref|YP_004084866.1| methyltransferase type 11 [Micromonospora sp. L5]
 gi|315412598|gb|ADU10715.1| Methyltransferase type 11 [Micromonospora sp. L5]
          Length = 258

 Score = 42.9 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          +     G+ V+++GAG G LT  L  + +  V  +E D      L+     
Sbjct: 35 ALEPAPGVRVLDLGAGTGKLTATLAEV-SDDVTAVEPDPAMLAELRRTLPD 84


>gi|302867621|ref|YP_003836258.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302570480|gb|ADL46682.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 258

 Score = 42.9 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          +     G+ V+++GAG G LT  L  + +  V  +E D      L+     
Sbjct: 35 ALEPAPGVRVLDLGAGTGKLTATLAEV-SDDVTAVEPDPAMLAELRRTLPD 84


>gi|121606871|ref|YP_984200.1| type 11 methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120595840|gb|ABM39279.1| Methyltransferase type 11 [Polaromonas naphthalenivorans CJ2]
          Length = 212

 Score = 42.9 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 57/143 (39%), Gaps = 8/143 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP 94
           +++ + +   +   V+E+G G G  T   L       +++ IE D +F   L   ++ H 
Sbjct: 54  QRLVQLARLGEARMVVELGPGTGGTTAAFLQAMSPTAQLLAIELDSEFHQRLD--AAMHD 111

Query: 95  NRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGTRLLFNWIS---ADTWPPFWESL 150
            R  +    A ++ +F     + +P  I++ +P++     + + ++   A    P    +
Sbjct: 112 PRFNLELGSAERLAEFLAARWLPAPDAIVSGIPFSTMAPEVSDRVAATVARVLRPGGRFV 171

Query: 151 TLLFQKEVGERITAQKNSPHYGR 173
               +  V + ++     P    
Sbjct: 172 AYQVRAHVADFMSPYLGQPETCW 194


>gi|299065279|emb|CBJ36447.1| putative methyltransferase, Methylase of polypeptide chain release
           factors [Ralstonia solanacearum CMR15]
          Length = 374

 Score = 42.9 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 25/143 (17%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             ++         +IG G G L  +L   G ++V+  ++D +      +  ++    +++
Sbjct: 188 VANAPLPSQALAFDIGTGTGVLAAVLAKRGVKRVVGTDQDARALACAHENLTRLGLQSQV 247

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT---LLF 154
           E+I+ D         F       I+ N P          W+ A    P   ++       
Sbjct: 248 EVIEAD--------LFPEGRAPLIVCNPP----------WLPARPSSPIERAVYDPDSRM 289

Query: 155 QKEVGERITA--QKNSPHYGRLS 175
            +   + + A  +     +  LS
Sbjct: 290 LRGFLDGLAAHLEPGGEGWLILS 312


>gi|288962762|ref|YP_003453056.1| sulfate adenylate transferase [Azospirillum sp. B510]
 gi|288915028|dbj|BAI76512.1| sulfate adenylate transferase [Azospirillum sp. B510]
          Length = 347

 Score = 42.9 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ-QFFPILKDISSQH 93
            +++    +    G  V++ G G G L+ + L  GA +V+ +++D       L   ++  
Sbjct: 53  TIRRALRGA-IRGGDRVLDAGCGSGLLSFLALEAGAGEVVAVDRDNVDLARDLA-RANGL 110

Query: 94  PNRLEIIQDD 103
            +R+  I+ D
Sbjct: 111 SDRIRFIEGD 120


>gi|255282130|ref|ZP_05346685.1| glycosyl transferase family [Bryantella formatexigens DSM 14469]
 gi|255267449|gb|EET60654.1| glycosyl transferase family [Bryantella formatexigens DSM 14469]
          Length = 1892

 Score = 42.9 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 11/119 (9%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
                V+EIGAG G +T  LL   A KV+ +E  ++   I      ++ N L I+  +  
Sbjct: 64  KKDAAVLEIGAGCGAIT-GLLCRRAAKVVSVELSKRRASINYARHKEYDN-LCIMVGN-- 119

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
            ++  +F      I +   L Y I       +   +T    +      F KE G  + A
Sbjct: 120 -LNDMEFPEKFDYIILNGVLEYAIS------FTEGETPYETFLQHMGCFLKEEGRILIA 171


>gi|291299757|ref|YP_003511035.1| methyltransferase type 12 [Stackebrandtia nassauensis DSM 44728]
 gi|290568977|gb|ADD41942.1| Methyltransferase type 12 [Stackebrandtia nassauensis DSM 44728]
          Length = 199

 Score = 42.9 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISS 91
            +   +           V+E+G G G  T  +    A +   + +E + +         +
Sbjct: 28  RLASAVVAPIPRRGDPVVVELGPGTGAFTAAIRQRLAGRGHQLAVELNPRLAEYTARRFT 87

Query: 92  QHPNRLEIIQDDALKVD-FEKFFNISSPIRIIANLPY 127
                ++++  DA ++        +     +++ LP+
Sbjct: 88  G----VDVVTADAARLPAILAERGLPGADVVVSGLPW 120


>gi|254171789|ref|ZP_04878465.1| methyltransferase [Thermococcus sp. AM4]
 gi|214033685|gb|EEB74511.1| methyltransferase [Thermococcus sp. AM4]
          Length = 210

 Score = 42.9 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A S+G + G  V ++G G G L      LGA KV  +E D++   + +  + +    +E 
Sbjct: 40  AHSAGDIAGKVVADLGTGTGVLAIGAKLLGAEKVYAVEIDEKALEVARRNAERAGVDVEF 99

Query: 100 IQDDALKVD 108
           I  D  + +
Sbjct: 100 INADVSEFN 108


>gi|319786796|ref|YP_004146271.1| methyltransferase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465308|gb|ADV27040.1| methyltransferase [Pseudoxanthomonas suwonensis 11-1]
          Length = 216

 Score = 42.9 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
           L G  V+++ AG G L    L+ GA + +++E+D      L+   ++      +++ DAL
Sbjct: 62  LPGARVLDLFAGSGALGLEALSRGAAEAVLVERDPGAATALRGNVARLGAPARVVEADAL 121

Query: 106 KV 107
           + 
Sbjct: 122 RW 123


>gi|218289628|ref|ZP_03493848.1| hemolysin A [Alicyclobacillus acidocaldarius LAA1]
 gi|218240278|gb|EED07461.1| hemolysin A [Alicyclobacillus acidocaldarius LAA1]
          Length = 279

 Score = 42.9 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 7/133 (5%)

Query: 36  LKKIAESSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           L++  ++ G      V I++GA  G  T  LL  GAR V  ++     +  L     Q  
Sbjct: 68  LERALDTFGIPVKDRVAIDVGASTGGFTDCLLQRGARLVYAVDV---GYGQLAWRLRQ-D 123

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +R+ +++    +      F+    + ++      I  RLLF  +S    P       +  
Sbjct: 124 DRVRVMERTNFRYVDPTLFDPRPDLAVMDVSF--ISIRLLFPKLSEVCLPDADIISLIKP 181

Query: 155 QKEVGERITAQKN 167
           Q E G     +  
Sbjct: 182 QFEAGRDRVGKGG 194


>gi|99081832|ref|YP_613986.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ruegeria
           sp. TM1040]
 gi|99038112|gb|ABF64724.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ruegeria
           sp. TM1040]
          Length = 217

 Score = 42.9 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
              L K+ ++        V+++  G G  T ++  L A+ VI +E+D+      ++I S 
Sbjct: 64  PRTLAKMLDALDVRQDELVLDVACGFGYSTAVVARL-AQMVIGVEEDESLASEAQEILSA 122

Query: 93  -HPNRLEIIQDD 103
            + +   + Q D
Sbjct: 123 SNADNAIVHQGD 134


>gi|291336010|gb|ADD95600.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C7]
          Length = 248

 Score = 42.9 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +  N+  KI            I++GAG G L  + +  GA+KV  +E+  +    +K+I 
Sbjct: 28  ISENVKDKIV-----------IDLGAGSGILCYLAVKYGAKKVYALERRGELIDRMKEIL 76

Query: 91  SQHPNRLEIIQDDALKVDFEK 111
                 +E I  D L+ +  K
Sbjct: 77  GDS---VEYIHGDLLETELPK 94


>gi|229175049|ref|ZP_04302567.1| Dimethyladenosine transferase [Bacillus cereus MM3]
 gi|228608417|gb|EEK65721.1| Dimethyladenosine transferase [Bacillus cereus MM3]
          Length = 212

 Score = 42.9 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLFAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|168181643|ref|ZP_02616307.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Bf]
 gi|237796410|ref|YP_002863962.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Ba4
           str. 657]
 gi|259534499|sp|C3L3G5|PRMA_CLOB6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|182675116|gb|EDT87077.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Bf]
 gi|229261819|gb|ACQ52852.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Ba4
           str. 657]
          Length = 312

 Score = 42.9 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQD 102
              +  TV +IG G G L+     LGA+ VI ++ D       K+ I   + + +EI++ 
Sbjct: 173 HIKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEG 232

Query: 103 DALKV 107
           + ++V
Sbjct: 233 NLMEV 237


>gi|218782924|ref|YP_002434242.1| methyltransferase type 11 [Desulfatibacillum alkenivorans AK-01]
 gi|218764308|gb|ACL06774.1| Methyltransferase type 11 [Desulfatibacillum alkenivorans AK-01]
          Length = 201

 Score = 42.9 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLE 98
           E           E+G G G L +M L   A +   ++       + +     +    RLE
Sbjct: 40  EKLEIAPNDVFCEVGCGGGALLKMALE-KASRAAGLDLSPDMAALARKQNREAMESGRLE 98

Query: 99  IIQDDA 104
           +++ DA
Sbjct: 99  VLEGDA 104


>gi|159035871|ref|YP_001535124.1| methyltransferase type 11 [Salinispora arenicola CNS-205]
 gi|157914706|gb|ABV96133.1| Methyltransferase type 11 [Salinispora arenicola CNS-205]
          Length = 217

 Score = 42.9 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
            + +K+ + +    G  V+EIG G G+L Q L       V  +  D  
Sbjct: 37 KRVHEKLLDRANIRPGQRVLEIGCGTGDLLQTLKRRYPD-VSALGIDPD 84


>gi|312137498|ref|YP_004004835.1| precorrin-6y c5,15-methyltransferase (decarboxylating), cbit
           subunit [Methanothermus fervidus DSM 2088]
 gi|311225217|gb|ADP78073.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanothermus fervidus DSM 2088]
          Length = 187

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +       V+E+G G G +T  L    A ++  I+K+ +   + +    +    +R+ II
Sbjct: 29  ARIKKNDYVVEVGCGTGAITIELAK-KAGRIDAIDKNIKAINLTRKNLKKQGLLDRVNII 87

Query: 101 QDDALKV 107
             +A +V
Sbjct: 88  HGEATEV 94


>gi|284165314|ref|YP_003403593.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284014969|gb|ADB60920.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 255

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + +++ E+        V+E   G G   +  L  G      IE D++    L+D     P
Sbjct: 25  LTRRLLEALTIGPADDVVEFAPGAGATARRALAYGPNSYTGIELDREAARALRDDLGG-P 83

Query: 95  NRLEIIQDDALKVD 108
            R EI+  +A   D
Sbjct: 84  GR-EIVVGNAADTD 96


>gi|323336059|gb|EGA77333.1| Mtf1p [Saccharomyces cerevisiae Vin13]
          Length = 341

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 103/339 (30%), Gaps = 82/339 (24%)

Query: 3   MNNKSHSLKTILSH---YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGIT------VIE 53
           M+     +K I      Y           +L +  +  KI +               V++
Sbjct: 1   MSVPIPGIKDISKLKFFYGFK--------YLWNPTVYNKIFDKLDLTKTYKHPEELKVLD 52

Query: 54  IGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------ 106
           +  G G  + +        +  ++EK    +  L       P  L+I++ D         
Sbjct: 53  LYPGVGIQSAIFYNKYCPXQYSLLEKRSSLYKFLNAKFEGSP--LQILKRDPYDWSTYSN 110

Query: 107 -VDFEKFF--------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTL 152
            +D E+ F        +I+     +AN+       L+  W+S      +        + L
Sbjct: 111 LIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLL 170

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD---------------------IS 191
                   ++ A+       + SV+    T   ++                        S
Sbjct: 171 WMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFS 230

Query: 192 PHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR---KTLRQSL------- 241
               +P+      ++   P        +++   +T+     +R    T+  SL       
Sbjct: 231 AAEIWPTKGKPIALVEMDPID--FDFDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQY 288

Query: 242 --KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
              R+  ++LL +  I+       L+ ++F  +T +  +
Sbjct: 289 FNSRITDKDLLKKCPID-------LTNDEFIYLTKLFME 320


>gi|311103724|ref|YP_003976577.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310758413|gb|ADP13862.1| protein-L-isoaspartate O-methyltransferase 1 [Achromobacter
           xylosoxidans A8]
          Length = 226

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QN L    +  ++A+         V+EIG G G     LL   A++V  +E D +     
Sbjct: 69  QNMLA-PKVEARLAQELLLTKSDCVLEIGTGSGY-QAALLGYLAQQVTSVEIDSRLVTFA 126

Query: 87  -KDISSQHPNRLEIIQDDA 104
            +++   +   +++   DA
Sbjct: 127 QQNLQMSNVTNVKVETGDA 145


>gi|295705803|ref|YP_003598878.1| biotin biosynthesis protein BioC [Bacillus megaterium DSM 319]
 gi|294803462|gb|ADF40528.1| biotin biosynthesis protein BioC [Bacillus megaterium DSM 319]
          Length = 274

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           ++EIG G G LTQ+L     +  I  ++       + K   ++  +R+ +I  D 
Sbjct: 47  ILEIGCGTGYLTQLLCKKFPKAAITAVDLSSGMIELAKKKVTE--DRVSLICGDI 99


>gi|254446610|ref|ZP_05060086.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
 gi|198260918|gb|EDY85226.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
          Length = 376

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEII 100
           +      T+++IG G G +          K I IEKD     + K     +   N++ II
Sbjct: 242 ANITPSDTLLDIGCGDGRIVLEAAKTYGCKSIGIEKDPDLANLAKKRVESADFQNQVTII 301

Query: 101 QD 102
             
Sbjct: 302 SG 303


>gi|152982224|ref|YP_001353635.1| hypothetical protein mma_1945 [Janthinobacterium sp. Marseille]
 gi|151282301|gb|ABR90711.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 368

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           L  IAE+          +IG G G +  +L   G  KV+  E+D +     K+   +   
Sbjct: 179 LNLIAEAPLPSKK-LAFDIGTGTGVIAALLAQRGVEKVVATEQDVRALACAKENLLRLDL 237

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            +R+++++ D         F       I+ N P+
Sbjct: 238 RDRVQVLEAD--------LFPAGKAPLIVCNPPW 263


>gi|150396367|ref|YP_001326834.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sinorhizobium medicae WSM419]
 gi|150027882|gb|ABR59999.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sinorhizobium medicae WSM419]
          Length = 219

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            + P+      +L++ + L K+ + +       V+EIG G G     LL+L A  V+ +E
Sbjct: 57  GVQPR------YLMEPSPLAKLLQLAEISKSDLVLEIGCGTGY-ASALLSLLAGSVVALE 109

Query: 78  KDQQFFPILKDISSQH-PNRLEIIQDDALK 106
            D+          S+   + + ++  D  K
Sbjct: 110 SDEALAATATATLSRLGYDNVAVVSGDLTK 139


>gi|190014943|ref|YP_001965455.1| Truncated chimeric protein [Escherichia coli]
 gi|109389664|gb|ABG29583.1| Truncated chimeric protein [Escherichia coli]
          Length = 158

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    + +++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCERLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|326329755|ref|ZP_08196076.1| tRNA (adenine-N(1)-)-methyltransferase [Nocardioidaceae bacterium
           Broad-1]
 gi|325952520|gb|EGD44539.1| tRNA (adenine-N(1)-)-methyltransferase [Nocardioidaceae bacterium
           Broad-1]
          Length = 317

 Score = 42.9 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I   +    G +V+E G G G LT  LL       KV   E+ ++F  + +    Q 
Sbjct: 87  AAQIVAMADIFPGASVVEAGVGSGALTCSLLRAVGPFGKVTSFERREEFAEVARKNVDQF 146


>gi|221632372|ref|YP_002521593.1| 50S ribosomal protein L11 methyltransferase [Thermomicrobium roseum
           DSM 5159]
 gi|221155577|gb|ACM04704.1| ribosomal protein L11 methyltransferase [Thermomicrobium roseum DSM
           5159]
          Length = 306

 Score = 42.9 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
              G++V++ GAG G L+   L LGAR V   E D     +L++   ++   +R  +   
Sbjct: 163 VTPGMSVLDAGAGSGILSIAALALGARSVTAWEIDPVAGEVLRENLERNGVADRATVRIG 222

Query: 103 DALKVDFEKFFNISSPIRIIANL 125
           D      E   +  +   ++AN+
Sbjct: 223 DV----TEDLTDREAYDLVVANI 241


>gi|323704199|ref|ZP_08115778.1| ribosomal protein L11 methyltransferase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536265|gb|EGB26037.1| ribosomal protein L11 methyltransferase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 308

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF--FPILKDISSQHPNRLEIIQ 101
               G TV ++G G G L+ +   LGA+KV  ++ D+       L    ++  N +E+++
Sbjct: 170 NVKSGDTVFDVGCGTGILSIVSSKLGAKKVFAVDVDEVALKVASLNVKLNKLDN-IEVLK 228

Query: 102 DDALK 106
            D LK
Sbjct: 229 SDLLK 233


>gi|268323941|emb|CBH37529.1| conserved hypothetical protein, methyltransferase domain family
           [uncultured archaeon]
          Length = 201

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLE 98
           +          +EIG G G L  M L    +    I+       I ++ + +     R+E
Sbjct: 37  DKLQLKPDDIFLEIGCGGGVLLNMALET-VKNAKAIDHSSDMVQIAREKNQEAISEGRVE 95

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           I+Q +A   +   + + S      +N+ + I   ++ 
Sbjct: 96  IVQGNA---ESLPWDDNSFTCATASNMFFFIDKPMIV 129


>gi|260467446|ref|ZP_05813616.1| protein-L-isoaspartate O-methyltransferase [Mesorhizobium
           opportunistum WSM2075]
 gi|259028782|gb|EEW30088.1| protein-L-isoaspartate O-methyltransferase [Mesorhizobium
           opportunistum WSM2075]
          Length = 663

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 60/210 (28%), Gaps = 16/210 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G  V+E+G G G     +  +    V  IE+        K    +
Sbjct: 64  PYIVALMIEMADVKAGDHVLEVGTGSGYAAAAMSRI-VEHVYTIERHPGLAKSAKQRFEK 122

Query: 93  HPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL-LFNWISADTWPPFWESL 150
              R +E+   D  K   E      +P   I       G  L L   +            
Sbjct: 123 LGYRNIEVRTGDGTKGWPEA-----APFDAIVVAASGPGAPLALQEQLDVGGVLVVPVGD 177

Query: 151 TLLFQK--EVGERITAQKNSPHYG----RLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
               Q+  +V     +  +   YG       +      +   + ++   +  P P   S 
Sbjct: 178 DPDLQRLLKVTRTGASTYSEEDYGGVRFVPLIGEQGWPEGNKLTEVDRPLRHPPPV--SL 235

Query: 205 VIHFIPHLNPIPCCLESLKKITQEAFGKRR 234
                    P+P   +       + F  RR
Sbjct: 236 PDMIARAAEPLPDFDDPTFGELFDRFADRR 265


>gi|294868628|ref|XP_002765615.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
           [Perkinsus marinus ATCC 50983]
 gi|239865694|gb|EEQ98332.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
           [Perkinsus marinus ATCC 50983]
          Length = 225

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N L  +       D    +++GAG G LT+ L      KV   E  Q F   LK     
Sbjct: 46  KNHLDSLINILDLKDNTVSVDVGAGTGLLTRELARPVDAKVYATEISQGFLDYLKKDDRI 105

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
              ++ +I+     +   +    +  + ++ ++ ++    
Sbjct: 106 DKEKVHLIKCTEESLCLPEAVKGTVDLVLVCDVYHHFTHP 145


>gi|327405426|ref|YP_004346264.1| ribosomal RNA adenine methylase transferase [Fluviicola taffensis
           DSM 16823]
 gi|327320934|gb|AEA45426.1| ribosomal RNA adenine methylase transferase [Fluviicola taffensis
           DSM 16823]
          Length = 185

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 20/173 (11%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDI 89
              + KK+ E         ++E+G G G  T+ +L        ++V E +  F  +L+  
Sbjct: 25  SKYLAKKMLEKIDFSTAKVIVELGPGTGVFTRKILANLSPDGILLVFELNDSFMNMLRKE 84

Query: 90  SSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            S    R+ +I D A K+ ++ + +  S    +I++LP       L N I  ++     +
Sbjct: 85  FS--DPRVILIHDSAEKIGEYLEKYGYSQADAVISSLPLANFPSDLKNRILTESHRVMHQ 142

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
               +   +    + A+K             +  +  + F       FP   V
Sbjct: 143 DAVYV---QFQYSLNAKKAIK---------QFYKQVEISFT---PANFPPAFV 180


>gi|260462082|ref|ZP_05810326.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum
           WSM2075]
 gi|259031942|gb|EEW33209.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum
           WSM2075]
          Length = 338

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E+    +G  +I+   G G  T+ +L  GA  V+ I++D       +D+ +Q   RL ++
Sbjct: 28  EALAPAEGDIIIDGTFGAGGYTKAILATGA-SVVAIDRDPDAIAAGRDLEAQSGGRLRLV 86

Query: 101 QDDALKVD 108
           Q     +D
Sbjct: 87  QAPFSTLD 94


>gi|260574344|ref|ZP_05842348.1| methyltransferase FkbM family [Rhodobacter sp. SW2]
 gi|259023240|gb|EEW26532.1| methyltransferase FkbM family [Rhodobacter sp. SW2]
          Length = 240

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           ++    G  V++ GA  G++T +L   GA  V+  E D   F  L    + HP R+ +I 
Sbjct: 51  AAMLRPGDLVMDCGANIGSITAILADTGAD-VLAFEPDPFAFAELTAKFADHP-RVTLIN 108

Query: 102 D 102
            
Sbjct: 109 A 109


>gi|111017870|ref|YP_700842.1| S-adenosylmethionine-dependent methyltransferase [Rhodococcus
           jostii RHA1]
 gi|110817400|gb|ABG92684.1| probable S-adenosylmethionine-dependent methyltransferase
           [Rhodococcus jostii RHA1]
          Length = 284

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 7/152 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL       +VI  E            ++  
Sbjct: 93  AAQIVHEGDVFPGARVLEAGAGSGALTCSLLRAVGPEGRVISYEVRDDHAEHAVRNVETF 152

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
             + P   ++   D  + D +        + +    P++     +   +        + +
Sbjct: 153 FGERPENWDLTIADVAEFDADAAGGQVDRVVLDMLAPWD-ALPAVSKALVPGGVLIVYVA 211

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
                 K V      +  +      S++ GW 
Sbjct: 212 TVTQLSKVVEAMREQECWTEPRSWESIVRGWH 243


>gi|92117891|ref|YP_577620.1| methyltransferase type 12 [Nitrobacter hamburgensis X14]
 gi|91800785|gb|ABE63160.1| Methyltransferase type 12 [Nitrobacter hamburgensis X14]
          Length = 345

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 29  FLLDLNILK-------KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +L D N L        ++  +     G  V+E G G   ++ +L  LG   V VI+ D  
Sbjct: 144 YLHDGNFLAGYLESFGQLIRTLDVRPGTRVLEYGCGDAQISLLLARLGCD-VTVIDIDPN 202

Query: 82  FFPILKDISSQHPNRLEIIQDDAL 105
              I++  +++    +  I  + L
Sbjct: 203 SIKIVQQQAARIGCPITAIVGNFL 226


>gi|330815768|ref|YP_004359473.1| Protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           gladioli BSR3]
 gi|327368161|gb|AEA59517.1| Protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           gladioli BSR3]
          Length = 217

 Score = 42.9 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  ++ +        +++EIGAG G +  +L   G + V+ ++ D      
Sbjct: 57  GQKMLA-PRVEARMLQELAVKKHESILEIGAGSGYMAALLAHRG-QHVVTVDIDPALVQF 114

Query: 86  LKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             D    +  +  E++  DA +   EK       I +   LP
Sbjct: 115 ATDNLRDNGVSNAEVVLADAARGLPEK--GPYDVICVSGGLP 154


>gi|261345449|ref|ZP_05973093.1| SAM-dependent methyltransferase [Providencia rustigianii DSM 4541]
 gi|282566496|gb|EFB72031.1| SAM-dependent methyltransferase [Providencia rustigianii DSM 4541]
          Length = 244

 Score = 42.9 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 26/157 (16%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +        ++IG+G G +  ML    A   +  +E D       +    + P   RL+I
Sbjct: 40  APINGVQRALDIGSGSGLIALMLAQRNAHLNIDAVELDSDAAAQAQQNFDESPWAERLQI 99

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY-------------------NIGTRLLFNWISA 140
           +  D +    +          I++N PY                    +   +L      
Sbjct: 100 VNQDIISFSEQ---TTKQYDVIVSNPPYFEPAISCRDEKRDQARYTSTLNHPILLECARR 156

Query: 141 DTWPPFWESLTLLFQK-EVGERITAQKNSPHYGRLSV 176
              P     L L ++  E  E +  +       R++V
Sbjct: 157 CLLPQGIFCLVLPYEVGEKVEGMAVENGWFSALRMNV 193


>gi|58000285|ref|YP_190164.1| hypothetical protein O2R_67 [Escherichia coli]
 gi|331668071|ref|ZP_08368923.1| conserved hypothetical protein [Escherichia coli TA271]
 gi|47716799|gb|AAT37577.1| conserved hypothetical protein [Escherichia coli]
 gi|331064585|gb|EGI36492.1| conserved hypothetical protein [Escherichia coli TA271]
          Length = 187

 Score = 42.9 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVMLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|83999882|emb|CAI59995.1| hypothetical protein [Streptomyces tenjimariensis]
          Length = 399

 Score = 42.9 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +   +G TV+EIG G G  T +     G+  V  IE D        D          +  
Sbjct: 125 ADVREGHTVLEIGTGTGYSTALACERLGSADVTSIEVDPHRLAQAADALYGLGYTPTLAV 184

Query: 102 DDALKVDFEK 111
            D L   + +
Sbjct: 185 ADGLYGYWPE 194


>gi|83942470|ref|ZP_00954931.1| cyclopropane-fatty-acyl-phospholipid synthase [Sulfitobacter sp.
           EE-36]
 gi|83846563|gb|EAP84439.1| cyclopropane-fatty-acyl-phospholipid synthase [Sulfitobacter sp.
           EE-36]
          Length = 402

 Score = 42.9 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 17/141 (12%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             + +  G   G  V+EIG G G   +        KV  +   ++ F   K+        
Sbjct: 175 ASMVDQMGVSAGDHVLEIGCGWGGFAEYAAKERGLKVTCLTISKEQFNYAKERIENAG-- 232

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL--- 153
                 D ++   + + +              I +  +F  +    WP ++ +L      
Sbjct: 233 ----LADVVQFKLQDYRDERGTYD-------GIASIEMFEAVGEQYWPSYFNTLHACLKP 281

Query: 154 -FQKEVGERITAQKNSPHYGR 173
             Q  +       +    Y R
Sbjct: 282 GCQATLQIITVPDRRWKVYKR 302


>gi|315222066|ref|ZP_07863976.1| conserved hypothetical protein [Streptococcus anginosus F0211]
 gi|315188816|gb|EFU22521.1| conserved hypothetical protein [Streptococcus anginosus F0211]
          Length = 317

 Score = 42.5 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 11/80 (13%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPIL 86
           FL+D              + I ++EIG+G GNL + +L    + V  + +E D     I 
Sbjct: 100 FLIDQ---------LSKKEHIDILEIGSGMGNLAETILNNTQKNVDYLGLELDDLLIDIS 150

Query: 87  KDISSQHPNRLEIIQDDALK 106
             I+     ++  +Q DA++
Sbjct: 151 ASIADVMDAKVSFVQGDAVR 170


>gi|255526365|ref|ZP_05393279.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium carboxidivorans P7]
 gi|255509942|gb|EET86268.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium carboxidivorans P7]
          Length = 188

 Score = 42.5 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 38  KIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILK-DISSQH 93
           +I  ++     +   V++IGAG G+++  +  +  + +V  IEKD++   ++K +     
Sbjct: 22  RILSTAKLELEEDYRVLDIGAGTGSVSIQIAKICPKGEVTAIEKDEEALKVIKLNKEKFK 81

Query: 94  PNRLEIIQDDAL 105
              L I++ +A+
Sbjct: 82  TGNLNIVEGEAM 93


>gi|237813995|ref|YP_002898446.1| putative methyltransferase [Burkholderia pseudomallei MSHR346]
 gi|237503256|gb|ACQ95574.1| putative methyltransferase [Burkholderia pseudomallei MSHR346]
          Length = 378

 Score = 42.5 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         EIG G G L  +L + G  +++  ++D++      +  ++  +  ++
Sbjct: 191 VARAPLPSMSLAFEIGVGTGVLAAVLASRGVGRIVATDQDKRALACAAENVARLGYARQI 250

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ D         F       I+ N P+
Sbjct: 251 EIVEAD--------LFPDGRAPLIVCNPPW 272


>gi|170047169|ref|XP_001851106.1| methyltransferase [Culex quinquefasciatus]
 gi|167869669|gb|EDS33052.1| methyltransferase [Culex quinquefasciatus]
          Length = 215

 Score = 42.5 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102
           G L+   V+++G GPG L+     LGA+ V+ IE D     + ++         ++ +Q 
Sbjct: 48  GDLENKLVLDLGCGPGMLSIGAALLGAQHVVGIEIDLDAIKVFQENVQGFELENVDCVQW 107

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D L +D    ++I     ++ N P+
Sbjct: 108 DVLNLD--GLYDILKFDTVLMNPPF 130


>gi|296105842|ref|YP_003617542.1| hypothetical protein lpa_00488 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647743|gb|ADG23590.1| hypothetical protein lpa_00488 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 258

 Score = 42.5 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           + +K            +++IG G G  T+ +LL +    V+ I+  +    + +D+S + 
Sbjct: 21  VAEKYLAYLKVNPTDKILDIGCGNGAFTKNILLQVPQGSVLGIDASENMLHLAQDMSKKF 80

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
           PN   + + D L + F   F+
Sbjct: 81  PN-FSVQKADVLTMTFNSQFD 100


>gi|253801018|ref|YP_003034019.1| hypothetical protein pVir_44 [Escherichia coli Vir68]
 gi|253721195|gb|ACT33504.1| conserved hypothetical protein [Escherichia coli Vir68]
          Length = 187

 Score = 42.5 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    + +++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCERLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|148358493|ref|YP_001249700.1| hypothetical protein LPC_0359 [Legionella pneumophila str. Corby]
 gi|148280266|gb|ABQ54354.1| hypothetical protein LPC_0359 [Legionella pneumophila str. Corby]
          Length = 258

 Score = 42.5 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           + +K            +++IG G G  T+ +LL +    V+ I+  +    + +D+S + 
Sbjct: 21  VAEKYLAYLKVNPTDKILDIGCGNGAFTKNILLQVPQGSVLGIDASENMLHLAQDMSKKF 80

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
           PN   + + D L + F   F+
Sbjct: 81  PN-FSVQKADVLTMTFNSQFD 100


>gi|45359164|ref|NP_988721.1| putative RNA methylase [Methanococcus maripaludis S2]
 gi|45048039|emb|CAF31157.1| Putative RNA methylase [Methanococcus maripaludis S2]
          Length = 260

 Score = 42.5 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
              G  V ++G G G L  M+    A+ V  +E D       ++ I   + + + +I+DD
Sbjct: 32  VKPGDIVFDLGTGSGIL-AMIAAKNAKHVYAVELDPITTEYTRENIKENNYDNITVIEDD 90

Query: 104 ALKVDFEKFFNI 115
           A    F +  ++
Sbjct: 91  AAYYPFSEKADV 102


>gi|328956907|ref|YP_004374293.1| putative AdoMet-dependent methyltransferase [Carnobacterium sp.
           17-4]
 gi|328673231|gb|AEB29277.1| putative AdoMet-dependent methyltransferase [Carnobacterium sp.
           17-4]
          Length = 214

 Score = 42.5 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           NILK+I +      G+ V+E G G GNLTQ LL+ G + V  IE  ++   + K      
Sbjct: 36  NILKEIVQ----RSGMNVLEFGIGTGNLTQRLLSSG-KWVFPIEPSKEMRELAKKKL--- 87

Query: 94  PNRLEIIQDD 103
           P+ + I   D
Sbjct: 88  PSEVMIYDGD 97


>gi|317506024|ref|ZP_07963854.1| tRNA (adenine-N1-)-methyltransferase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255682|gb|EFV14922.1| tRNA (adenine-N1-)-methyltransferase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 309

 Score = 42.5 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQ----FFPILKDISS 91
           +I        G  V+E G G G LT  LL     A +VI  E  +         ++    
Sbjct: 98  QIVMEGDIFPGARVLEAGVGSGALTCSLLRAVGPAGEVISYEIREDHAQFAVANVERFFG 157

Query: 92  QHPNRLEIIQDDALKVDFEK 111
             P+   +   D  + D E+
Sbjct: 158 GLPDNWRLTVADLAEFDPEQ 177


>gi|212711366|ref|ZP_03319494.1| hypothetical protein PROVALCAL_02438 [Providencia alcalifaciens DSM
           30120]
 gi|212686095|gb|EEB45623.1| hypothetical protein PROVALCAL_02438 [Providencia alcalifaciens DSM
           30120]
          Length = 208

 Score = 42.5 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+           V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYIVAKMTALLAVKPTDHVLEIGTGSGYQTAVLAHLCEH-VYSVER----VKSLQWTAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +    P    I+   P  I + LL   
Sbjct: 116 RFKLLDLHNISTRHGDGWEGWQSKGPFDGIIVTAAPSEIPSLLLKQL 162


>gi|134100186|ref|YP_001105847.1| hypothetical protein SACE_3648 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006595|ref|ZP_06564568.1| hypothetical protein SeryN2_18911 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912809|emb|CAM02922.1| hypothetical protein SACE_3648 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 221

 Score = 42.5 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           +++G G G+L + LL   A +V+ +++D       + +SS   N ++++  D  +V+   
Sbjct: 38  LDVGCGSGDLAR-LLARRADEVLAVDQDPSIVEHARSLSSHRTN-IDVVAADITEVELPG 95

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWIS 139
             ++ + +  + +LP+    R     ++
Sbjct: 96  DHDVITCVATLHHLPFTATLRRFRRALA 123


>gi|83593245|ref|YP_426997.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576159|gb|ABC22710.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 420

 Score = 42.5 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
           + IA       G  V++IG G G L   L      +V  I   Q+   + ++   ++   
Sbjct: 162 RLIAAKLMLRPGQHVLDIGCGWGGLALHLARHHDVRVTGITLSQEQAALARERVRAAGLQ 221

Query: 95  NRLEIIQDDALKVD 108
           +R+ I+  D   +D
Sbjct: 222 DRVTILLKDYRDLD 235


>gi|88813495|ref|ZP_01128729.1| phospholipid N-methyltransferase [Nitrococcus mobilis Nb-231]
 gi|88789208|gb|EAR20341.1| phospholipid N-methyltransferase [Nitrococcus mobilis Nb-231]
          Length = 191

 Score = 42.5 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISS 91
           ++++++           ++E G G G +T+ LL   A   +++ +E + +F   L     
Sbjct: 31  HLIERLLRPIDWSRAKHIVEYGPGVGTITKRLLAHMAPDARLLALELNPEFVTYLHREVK 90

Query: 92  QHPNRLEIIQDDA 104
               RLE+++  A
Sbjct: 91  --DPRLEVVKMSA 101


>gi|330465199|ref|YP_004402942.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Verrucosispora maris AB-18-032]
 gi|328808170|gb|AEB42342.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Verrucosispora maris AB-18-032]
          Length = 236

 Score = 42.5 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ    D    +    +     G  V+++GAG G  T+ L   GA     +  D    
Sbjct: 38  SFGQ----DRFWRRATRSALELRPGDRVLDVGAGTGVSTEELAHSGA---YAVGADLSLG 90

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEK 111
            +      +   ++ ++  DAL++ F  
Sbjct: 91  ML--YAGKRTRPQVPLLAGDALRLPFAD 116


>gi|257055252|ref|YP_003133084.1| protein-L-isoaspartate carboxylmethyltransferase [Saccharomonospora
           viridis DSM 43017]
 gi|256585124|gb|ACU96257.1| protein-L-isoaspartate carboxylmethyltransferase [Saccharomonospora
           viridis DSM 43017]
          Length = 382

 Score = 42.5 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            +++ ++ E   +  G  V+EIG G G N+  +   LG   V  ++ D       +   +
Sbjct: 92  PDLMARMLELLDARPGHRVLEIGTGTGYNVGLLAHALGEENVFSVDIDPDLVDAARARLA 151

Query: 92  QHPNRLEIIQDD 103
                  ++ DD
Sbjct: 152 VAGYHPTLVADD 163


>gi|229086940|ref|ZP_04219098.1| Dimethyladenosine transferase [Bacillus cereus Rock3-44]
 gi|228696383|gb|EEL49210.1| Dimethyladenosine transferase [Bacillus cereus Rock3-44]
          Length = 212

 Score = 42.5 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            V+E G G GNLT  LL  G   V  IE  ++   I K    + P    I + D L  D 
Sbjct: 48  NVLEFGVGTGNLTNKLLLAG-HTVYGIEPSREMRTIAK---QKLPEGFSITEGDFLSFDV 103

Query: 110 EKFFN 114
               +
Sbjct: 104 PGSID 108


>gi|218510202|ref|ZP_03508080.1| probable L-isoaspartyl protein carboxyl methyltransferase protein
           [Rhizobium etli Brasil 5]
          Length = 402

 Score = 42.5 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +       V+E+G G G     L++  AR V  +E+ ++     ++   +
Sbjct: 63  PFIVALMIEKADLEADDKVLEVGTGSGY-ASALVSRIARHVYSVERHERLALQARERFER 121

Query: 93  H-PNRLEIIQDD 103
                +++   D
Sbjct: 122 LGYGNIDVRVGD 133


>gi|120436807|ref|YP_862493.1| DNA-methyltransferase [Gramella forsetii KT0803]
 gi|117578957|emb|CAL67426.1| conserved hypothetical protein-possibly DNA-methyltransferase
           [Gramella forsetii KT0803]
          Length = 515

 Score = 42.5 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           L ++  +        G  ++E  AG GN+ + L   GA++V+  E +     I+   S  
Sbjct: 12  LGVVDYMISQIDV-KGKVILEPSAGSGNIVEALFKHGAKQVLTYEIEPDLQKIVSTKS-- 68

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
                +++  D L+   E+  +I+    IIAN P++ G + +              SL  
Sbjct: 69  -----KLLGSDFLESKPEQLSHIN---AIIANPPFSTGGKHILKMWEVAPEGCEIISLCN 120

Query: 153 LFQKEV 158
               EV
Sbjct: 121 SNTLEV 126


>gi|86359922|ref|YP_471812.1| L-isoaspartyl protein carboxyl methyltransferase protein [Rhizobium
           etli CFN 42]
 gi|86284024|gb|ABC93085.1| probable L-isoaspartyl protein carboxyl methyltransferase protein
           [Rhizobium etli CFN 42]
          Length = 630

 Score = 42.5 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G  V+E+G G G     L++  AR V  IE+ ++     ++   +
Sbjct: 33  PYIVALMIEKADLDAGDKVLEVGTGSGY-ASALISRIARHVYSIERHERLAVQARERFEK 91

Query: 93  HPNR-LEIIQDD 103
              R +++   D
Sbjct: 92  LGYRNIDVRVGD 103


>gi|294629298|ref|ZP_06707858.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. e14]
 gi|292832631|gb|EFF90980.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. e14]
          Length = 413

 Score = 42.5 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++ E      G+ V+EIG G G  T +L    G R V  IE D       +    
Sbjct: 144 PSLVLRMLEDLQIEPGVRVLEIGTGTGYSTALLCRRLGERNVTSIEYDADVAARARSALR 203

Query: 92  QHPNRLEIIQDDALK 106
           +      ++  D L+
Sbjct: 204 RLGAHPLLVTGDGLR 218


>gi|237752552|ref|ZP_04583032.1| SAM dependent methyltransferase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376041|gb|EEO26132.1| SAM dependent methyltransferase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 241

 Score = 42.5 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+EIGAG G L  +       ++ +IEK+ +   +       +  + ++I  D 
Sbjct: 27  LKKHHAVLEIGAGCGILGMLCARDLPLQLTMIEKNPKMAELCAHNLRVNQIQADLICADF 86

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           L+ DF            +      +     ++
Sbjct: 87  LEFDFLDSKLDKKLESKMQTFNTILSNPPFYH 118


>gi|114769331|ref|ZP_01446957.1| Protein-L-isoaspartate carboxylmethyltransferase [alpha
           proteobacterium HTCC2255]
 gi|114550248|gb|EAU53129.1| Protein-L-isoaspartate carboxylmethyltransferase [alpha
           proteobacterium HTCC2255]
          Length = 218

 Score = 42.5 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +LD  I  K+ ++        V+++  G G  T ++  L A+ V+ +E D +     +  
Sbjct: 61  ILDPRIFAKMLDAVSIKSEELVLDVACGTGYSTAVIAKL-AQAVVALESDNKLAEFAQKA 119

Query: 90  SSQ 92
              
Sbjct: 120 LED 122


>gi|332283796|ref|YP_004415707.1| hypothetical protein PT7_0543 [Pusillimonas sp. T7-7]
 gi|330427749|gb|AEC19083.1| hypothetical protein PT7_0543 [Pusillimonas sp. T7-7]
          Length = 389

 Score = 42.5 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 8/136 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              +         +IG G G L  +L   G RK+I  ++D +      D + ++ NRL +
Sbjct: 201 VAQAPLPATDLAFDIGTGSGVLAAVLAQRGLRKIIATDQDTRAL----DCARENINRLGL 256

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
                +++     F       II N P+          I    + P    L    Q    
Sbjct: 257 --AKTIELQQTDLFPDGKSSLIICNPPWLPARPTTA--IEHAIYDPDNRMLLGYLQGLPA 312

Query: 160 ERITAQKNSPHYGRLS 175
                 +       L+
Sbjct: 313 HLQADGEGWLIMSDLA 328


>gi|255713996|ref|XP_002553280.1| KLTH0D13112p [Lachancea thermotolerans]
 gi|238934660|emb|CAR22842.1| KLTH0D13112p [Lachancea thermotolerans]
          Length = 341

 Score = 42.5 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 110/333 (33%), Gaps = 68/333 (20%)

Query: 3   MNNKSHSLKTILS---HYKIIPKKYMGQNFLLDLNILKKIAESSGS------LDGITVIE 53
           M  +   L+ +     +Y           +LL+  + +KI +             + V++
Sbjct: 1   MAIRVQPLRDLAKIQHYYGFR--------YLLNPGVHEKIFDKLDLPQTYQDTSKLKVLD 52

Query: 54  IGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK------ 106
           +  GPG  + +        + ++++    F   L+ +SS   +  ++   D  +      
Sbjct: 53  LYPGPGQHSAIFHNRFKPLQHVLMDARPDFVKHLRGLSSTQNDSFQLYGKDPYEWQSYTD 112

Query: 107 -VDFEKFF--------NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES-----LTL 152
            +D EK F        +I     ++ANL   +G  L   W++      +        + +
Sbjct: 113 LIDVEKKFVPSKRSLDSIHDEFLVLANLTGMVGEGLFMQWLACVGNRNWLHRFGRVKMLV 172

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD---------------------IS 191
              +    +I A+       + SV+    T   ++                         
Sbjct: 173 WVLESTAMKILARPGDQLRSKCSVVADTFTDTKLVATMETKNLHKFGQGVIDSHKPVLFP 232

Query: 192 PH-VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL--GGEN 248
            + V+ PS K  S       + +     L++   +T+     R   L ++ + L  GG +
Sbjct: 233 ENDVWMPSGKPIS---LLEVNPSKHNIDLDNFDYVTKHLLILRSTPLCEAFESLGHGGRD 289

Query: 249 LLHQAGIETN-LR--AENLSIEDFCRITNILTD 278
                  +   LR   + L+  +F  IT    +
Sbjct: 290 YFTTVIKDKKFLRKCPKELTSSEFLMITEAFVN 322


>gi|183981439|ref|YP_001849730.1| hypothetical protein MMAR_1415 [Mycobacterium marinum M]
 gi|183174765|gb|ACC39875.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 197

 Score = 42.5 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 3/134 (2%)

Query: 44  GSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G      V+EIGAG G +  +ML      ++ V + D           +    R    Q 
Sbjct: 32  GIEPVGEVLEIGAGSGAMAAEMLAAQPDTRITVTDYDDAMVAAAAQRLAPFQTRATARQA 91

Query: 103 D--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
           D  AL      F  + + I +   + +          ++       ++ L+    + +  
Sbjct: 92  DATALPFGDNTFDTVLTFIMLHHTVRWEQTLAEAVRVLAPHGTLIGYDLLSSWPTRTLHR 151

Query: 161 RITAQKNSPHYGRL 174
              A       G L
Sbjct: 152 LEGAPHRLIERGEL 165


>gi|309779561|ref|ZP_07674322.1| methyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|308921802|gb|EFP67438.1| methyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 384

 Score = 42.5 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             ++         +IG G G L  +L   G ++VI  ++D +     ++  ++     ++
Sbjct: 197 VANAPLPSKTLAFDIGTGTGVLAAVLAKRGVKRVIGTDQDPRALACARENLARLGLQAQV 256

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +++  D         F       I+ N P+
Sbjct: 257 DVVDAD--------LFPEGRAPLIVCNPPW 278


>gi|269140333|ref|YP_003297034.1| cyclopropane-fatty-acyl-phospholipid synthase [Edwardsiella tarda
           EIB202]
 gi|267985994|gb|ACY85823.1| cyclopropane-fatty-acyl-phospholipid synthase [Edwardsiella tarda
           EIB202]
 gi|304560157|gb|ADM42821.1| Cyclopropane-fatty-acyl-phospholipid synthase [Edwardsiella tarda
           FL6-60]
          Length = 391

 Score = 42.5 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 7/90 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I        G  V++IG G G L   +      +V  I   Q+   + +   +  P 
Sbjct: 164 LDLICRKLDLQPGQRVLDIGCGWGGLAAYMARNYGVEVTGITISQEQCELARQRCAGLPV 223

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            L +       +D+         I  +   
Sbjct: 224 TLRL-------MDYRDLDQPFERIVSVGMF 246


>gi|162450983|ref|YP_001613350.1| putative SAM-dependent methyltransferase [Sorangium cellulosum 'So
           ce 56']
 gi|161161565|emb|CAN92870.1| putative SAM-dependent methyltransferase [Sorangium cellulosum 'So
           ce 56']
          Length = 269

 Score = 42.5 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +F             +G   G  V+++ AGPG L+  LL  G  +V  I+        L+
Sbjct: 28  HF---EKYAADALRLAGVGPGARVLDVAAGPGTLS--LLAAGEARVTAIDFAPAMVEQLR 82

Query: 88  DISSQHPNRLEIIQDDALKVDFEK 111
           + +++    +E    D + + FE 
Sbjct: 83  ERAARAGLAVEARVGDGMALPFED 106


>gi|288560191|ref|YP_003423677.1| SAM-dependent methyltransferase [Methanobrevibacter ruminantium M1]
 gi|288542901|gb|ADC46785.1| SAM-dependent methyltransferase [Methanobrevibacter ruminantium M1]
          Length = 274

 Score = 42.5 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 29/192 (15%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
              Y     K          N  +++          TV+++G G G++T  L     + +
Sbjct: 37  AEKYSERASK---------DNYTEQLISKMIISKEDTVLDVGCGEGSVTIPLSKE-VKSI 86

Query: 74  IVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFF------------NISSPIR 120
             I+   +   IL + I S+    ++ I++D   V+ EK+              I SP +
Sbjct: 87  TAIDATDKMLEILDEKIKSEGIENIKTIKEDINDVNLEKYGKFDIVLASRVVNGIKSPKK 146

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           + +N        +   ++    + P    L   F + + +      +      L    G 
Sbjct: 147 VFSNFN-----EMANKYVFITLFGPNNWKLEKDFHEYLSKEYNGAPSYTILLNLLAEMGI 201

Query: 181 RTKATMMFDISP 192
                 + D+ P
Sbjct: 202 YANIINL-DVGP 212


>gi|284164748|ref|YP_003403027.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284014403|gb|ADB60354.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 237

 Score = 42.5 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
              Y ++ ++  G    +   + ++ A +     G TV+E+G G G     L      + 
Sbjct: 28  ADLYDLVARRTPG----I-PKLRRRGAAACRLEPGDTVVEMGCGTGANLPYLREQVGSEG 82

Query: 74  IVIEKD---QQFFPILKDISSQHPNRLEIIQDDA 104
            V+  D          +++++++ N + +++ DA
Sbjct: 83  TVVGIDFTGPVL-ERARELTAEYDN-VHVVRGDA 114


>gi|260223319|emb|CBA33763.1| Protein-L-isoaspartate O-methyltransferase 2 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 215

 Score = 42.5 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    +  ++ +        +V+EIGAG G +   LL   AR+V+ +E   +    
Sbjct: 70  GQCMLA-PRLEARLLQDLAVQSHESVLEIGAGSGFM-AALLAHRARQVLTLEIVPELAAF 127

Query: 86  LK-DISSQHPNRLEIIQDD 103
            + +++    N + + + D
Sbjct: 128 ARSNLAQAGLNNVTVREAD 146


>gi|254253388|ref|ZP_04946706.1| Methylase [Burkholderia dolosa AUO158]
 gi|124895997|gb|EAY69877.1| Methylase [Burkholderia dolosa AUO158]
          Length = 390

 Score = 42.5 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         ++G G G L  +L + G ++++  ++D +     ++  ++  + +R+
Sbjct: 203 VARAPLPATSLAFDVGTGTGVLAAVLASRGVQRIVATDQDARALACARENVARLGYADRV 262

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++++ D         F       ++ N P+
Sbjct: 263 DVVEAD--------LFPAGRAPLVVCNPPW 284


>gi|24379557|ref|NP_721512.1| hypothetical protein SMU.1125c [Streptococcus mutans UA159]
 gi|24377502|gb|AAN58818.1|AE014950_1 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 198

 Score = 42.5 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 25/164 (15%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQ--NFLLDLNILKK---------IAESSGSLDGITVIE 53
           +  H ++ I           +GQ  +FL D  +  K         +  S    +  T+++
Sbjct: 11  DSKHDIRKIKVEL-------LGQSFHFLTDSGVFSKNMIDYGSQTLLNSLDFAEEKTLLD 63

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
           +G G G L   L  +    V +++ + +   + +  +  +     I Q D  +  F+ F 
Sbjct: 64  LGCGYGPLGIALAKVQKLDVTMVDINNRALDLTRQNAENNEVSANIFQSDIYENVFDSF- 122

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQK 156
                  II+N P   G +++   I           SLT++ QK
Sbjct: 123 -----DYIISNPPIRAGKKVVHTIIEGSINHLKENGSLTIVIQK 161


>gi|77463859|ref|YP_353363.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           2.4.1]
 gi|126462694|ref|YP_001043808.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558733|ref|ZP_08413055.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           WS8N]
 gi|4490571|emb|CAB38721.1| mg protoporphyrin methyltransferase [Rhodobacter sphaeroides]
 gi|77388277|gb|ABA79462.1| Mg protoporphyrin methyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|126104358|gb|ABN77036.1| magnesium protoporphyrin O-methyltransferase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332276445|gb|EGJ21760.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           WS8N]
          Length = 222

 Score = 42.5 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEI 99
                L G+ V++ G G G +T  L   GA +V+ ++   Q   I +     +H +R+  
Sbjct: 53  RLPKDLTGLRVLDAGCGAGQMTAELAARGA-QVMAVDISPQLVEIARKRLPPEHQDRVTF 111

Query: 100 IQDDALKVDFEKF 112
              D L  D  +F
Sbjct: 112 ASGDMLADDLGRF 124


>gi|298485657|ref|ZP_07003736.1| Glycosyl transferase, group 2 family protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298159683|gb|EFI00725.1| Glycosyl transferase, group 2 family protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 1543

 Score = 42.5 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD- 102
             L G +V+EIGAG G +++ L   GA  V+ +E   +   I    +    N + ++ + 
Sbjct: 81  HLLKGKSVLEIGAGCGAISRYLGEAGAD-VLALEGSPRRAAIAASRTRDLDN-VTVLAER 138

Query: 103 -DALKVDFE 110
            D LK+D +
Sbjct: 139 FDDLKIDRQ 147


>gi|238921255|ref|YP_002934770.1| cyclopropane fatty acyl phospholipid synthase [Edwardsiella
           ictaluri 93-146]
 gi|238870824|gb|ACR70535.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 381

 Score = 42.5 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I        G  V++IG G G L   +      +V  I   Q+   + +   +  P 
Sbjct: 154 LDLICRKLDLQPGQRVLDIGCGWGGLAAYMARNYGVEVTGITISQEQLELARQRCAGLP- 212

Query: 96  RLEIIQDDALKVDFE 110
            + +   D   +D  
Sbjct: 213 -VTLHLMDYRDLDEP 226


>gi|209552276|ref|YP_002284191.1| protein-L-isoaspartate O-methyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209539388|gb|ACI59320.1| protein-L-isoaspartate O-methyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 394

 Score = 42.5 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +G   G  V+E+G G G     L++  AR+V  IE+ ++     +D    
Sbjct: 54  PFIVALMLEKAGLKAGDKVLEVGTGSGY-ASALMSRIARQVYSIERHERLALQARDRFET 112

Query: 93  HPNR-LEIIQDDALKVDFEK 111
              R +E+   D  K   E 
Sbjct: 113 LGYRNIEVRVGDGSKGWPEA 132


>gi|160879115|ref|YP_001558083.1| hypothetical protein Cphy_0962 [Clostridium phytofermentans ISDg]
 gi|160427781|gb|ABX41344.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]
          Length = 191

 Score = 42.5 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 9/112 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDIS 90
             +  ++       +   +IE G G G  T+ +L+       VI+IE++++F+  L  + 
Sbjct: 21  KYLAYRMIREIDFKNAKYIIEYGPGTGAFTEKILSRVNNNTIVILIERNKEFYNSLNKLY 80

Query: 91  SQHPNRLEIIQDDALKVD-FEKFFNISSPIRIIANLPY-----NIGTRLLFN 136
             +   + I+ D A  +D   K +++S    I++ +P+     N+  R+L  
Sbjct: 81  -GYKKNVIIVNDSAENIDIILKRYSVSEVDYIVSGIPFASLPKNVSRRILMK 131


>gi|16264985|ref|NP_437777.1| putative methyltransferase, S-adenosyl-L-methionine (SAM)-MTase
           protein [Sinorhizobium meliloti 1021]
 gi|15141124|emb|CAC49637.1| putative methyltransferase, S-Adenosyl-L-methionine (SAM)-MTase
           protein [Sinorhizobium meliloti 1021]
          Length = 289

 Score = 42.5 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNR 96
           K  + +G  DG  V+++G G G+LT  L      +++  I+    F       ++    R
Sbjct: 50  KFIDFAGVADGEKVLDVGCGTGSLTFALADAARLKEIAAIDYSPVFVEEATRRNTN--PR 107

Query: 97  LEIIQDDALKVDFEK 111
           ++I + DA  + FE 
Sbjct: 108 IKIREADACALPFED 122


>gi|330833992|ref|YP_004408720.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Metallosphaera cuprina Ar-4]
 gi|329566131|gb|AEB94236.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Metallosphaera cuprina Ar-4]
          Length = 207

 Score = 42.5 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNR 96
           K+ +      G  V+E+G G G  T ++   +G   V  IE D       ++   ++   
Sbjct: 64  KMLDYLYLKGGDKVLEVGTGCGYYTAIIAEVVGYENVTTIEVDPWMANYAQNRLQKYRIN 123

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +E+     L +  +  FN +     +  LP  +  +++  
Sbjct: 124 VEVGDG-TLGMSQKAPFNKAIFWAALPTLPCYVYQQMIDK 162


>gi|291279008|ref|YP_003495843.1| tRNA (adenine-N(1)-)-methyltransferase [Deferribacter desulfuricans
           SSM1]
 gi|290753710|dbj|BAI80087.1| tRNA (adenine-N(1)-)-methyltransferase [Deferribacter desulfuricans
           SSM1]
          Length = 261

 Score = 42.5 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI---SSQHPNRL 97
           +    G+ V+E G G G L+  +L   A K  +   E  + F  + K+      Q+    
Sbjct: 94  ADVYPGLKVLEAGIGQGALSIAILRALADKGELCTYEVREDFIDMAKETIREFLQYTANH 153

Query: 98  EIIQDDALK----VDFEKFFNISSPIRIIANLPYNIGT 131
            II  +       V      ++  P  +I +    + +
Sbjct: 154 RIIHGNVYDGFDGVYDRIILDLPEPWHVIKHCDNGLVS 191


>gi|241763180|ref|ZP_04761239.1| Methyltransferase type 12 [Acidovorax delafieldii 2AN]
 gi|241367679|gb|EER61945.1| Methyltransferase type 12 [Acidovorax delafieldii 2AN]
          Length = 1786

 Score = 42.5 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 16/70 (22%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-------------KDQQFFPILKDISSQ 92
           L G  V+EIGAG G +T+ L   GA +V+ +E             +D     +L +   Q
Sbjct: 84  LPGAEVLEIGAGCGAITRYLGESGA-QVLALEGSARRAAIARARARDLPLVEVLAERFDQ 142

Query: 93  --HPNRLEII 100
               ++ +I+
Sbjct: 143 FRFNSQFDIV 152


>gi|126700839|ref|YP_001089736.1| putative methyltransferase [Clostridium difficile 630]
 gi|254976816|ref|ZP_05273288.1| putative methyltransferase [Clostridium difficile QCD-66c26]
 gi|255094201|ref|ZP_05323679.1| putative methyltransferase [Clostridium difficile CIP 107932]
 gi|255308266|ref|ZP_05352437.1| putative methyltransferase [Clostridium difficile ATCC 43255]
 gi|255315956|ref|ZP_05357539.1| putative methyltransferase [Clostridium difficile QCD-76w55]
 gi|255518613|ref|ZP_05386289.1| putative methyltransferase [Clostridium difficile QCD-97b34]
 gi|255651734|ref|ZP_05398636.1| putative methyltransferase [Clostridium difficile QCD-37x79]
 gi|306521530|ref|ZP_07407877.1| putative methyltransferase [Clostridium difficile QCD-32g58]
 gi|115252276|emb|CAJ70117.1| putative methyltransferase [Clostridium difficile]
          Length = 248

 Score = 42.5 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           ++ I +S G      ++E+  G GNLT  L       +  I+   +   + ++ + +   
Sbjct: 27  IEDIIDSEGV-KVKNILELACGTGNLTIPLTKKNYD-IAGIDISDEMLSVAREKAEKEGV 84

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            L ++Q D  ++DFE   +    +    +    I        + + T+    +    +F 
Sbjct: 85  ELVLLQQDISELDFE--ISDLDCVLCACDGFNYITYDDDLENVFSKTYELLKKDGIFIFD 142

Query: 156 KEVGERITAQKNSPHYG----RLSVLTGWRTK 183
                ++     +  YG     ++ +      
Sbjct: 143 ISSFYKLANILGNNMYGENREDIAYMWQNYFD 174


>gi|15899326|ref|NP_343931.1| L-isoaspartyl protein carboxyl methyltransferase (pcm) [Sulfolobus
           solfataricus P2]
 gi|284173655|ref|ZP_06387624.1| L-isoaspartyl protein carboxyl methyltransferase (pcm) [Sulfolobus
           solfataricus 98/2]
 gi|13815903|gb|AAK42721.1| L-isoaspartyl protein carboxyl methyltransferase (pcm) [Sulfolobus
           solfataricus P2]
 gi|261601088|gb|ACX90691.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sulfolobus
           solfataricus 98/2]
          Length = 236

 Score = 42.5 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           +     +   V+EIG G G  T ++   +G   VI +E D   F   K+I      R+++
Sbjct: 66  DILNLGETQKVLEIGTGIGYYTALMAEVVGDNNVISLEIDDTIFEYAKNILLPKYPRIKL 125

Query: 100 IQDD 103
           I+ D
Sbjct: 126 IKTD 129


>gi|551666|emb|CAA57169.1| magnesium-protoporphyrin O-methyltransferase [Rhodobacter
           sphaeroides]
          Length = 222

 Score = 42.5 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEI 99
                L G+ V++ G G G +T  L   GA +V+ ++   Q   I +     +H +R+  
Sbjct: 53  RLPKDLTGLRVLDAGCGAGQMTVELAARGA-QVMAVDISPQLVEIARKRLPPEHQDRVTF 111

Query: 100 IQDDALKVDFEKF 112
              D L  D  +F
Sbjct: 112 ASGDMLADDLGRF 124


>gi|118467672|ref|YP_889597.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
 gi|118168959|gb|ABK69855.1| putative methyltransferase [Mycobacterium smegmatis str. MC2 155]
          Length = 254

 Score = 42.5 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
            G   G   +E+GAG G+L + ++  GA  V  I+ D +F   L+       + + +++ 
Sbjct: 35  VGLSAGWNCLELGAGGGSLVEWMVEQGA-TVTAIDLDTRFVEHLR------SDTVTVVES 87

Query: 103 DALKVDFEKFF 113
           D  + +  +  
Sbjct: 88  DIRRTELPQAA 98


>gi|313681823|ref|YP_004059561.1| methyltransferase [Sulfuricurvum kujiense DSM 16994]
 gi|313154683|gb|ADR33361.1| methyltransferase [Sulfuricurvum kujiense DSM 16994]
          Length = 195

 Score = 42.5 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
              ++E+ +G G++    L+ GA+K+I +EKD+     L++ I+   P+  E+I+ D
Sbjct: 50  DAVLVEVFSGSGSIGLEALSRGAKKIIFMEKDRDAIRTLRENIAQTDPSACEVIEGD 106


>gi|260459770|ref|ZP_05808024.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Mesorhizobium opportunistum WSM2075]
 gi|259034572|gb|EEW35829.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Mesorhizobium opportunistum WSM2075]
          Length = 222

 Score = 42.5 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +L++ + L K+ + +      + +++G G G     LL+  A+ V+ +E D       + 
Sbjct: 65  YLMEASPLAKLMQLAEISAADSALDVGCGTGY-ASALLSRLAKSVVALESDPALAETARS 123

Query: 89  ISSQHP-NRLEIIQD 102
             S      + ++Q 
Sbjct: 124 TLSSLGCGNVTVVQG 138


>gi|94500339|ref|ZP_01306872.1| hypothetical protein RED65_06958 [Oceanobacter sp. RED65]
 gi|94427638|gb|EAT12615.1| hypothetical protein RED65_06958 [Oceanobacter sp. RED65]
          Length = 240

 Score = 42.5 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 12/123 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNR 96
           IA    S     V+++G G G L  ML       +  IE D            +S   NR
Sbjct: 31  IAR--ESSAPEYVLDLGMGTGVLGLMLAQAFDAHITGIELDSDACRDAHTNIEASPFSNR 88

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY---NIGTRLLFNWISADTWPPFWESLTLL 153
           + ++Q D       ++ +      I++N P+   ++        ++       +  L   
Sbjct: 89  VRVLQADI-----RQWRDTRRSDLIVSNPPFFTAHLANPNKQKAMARHNNHLPFSELVGS 143

Query: 154 FQK 156
            Q+
Sbjct: 144 IQR 146


>gi|6690703|gb|AAF24271.1| BchM [Rhodobacter sphaeroides]
          Length = 222

 Score = 42.5 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEI 99
                L G+ V++ G G G +T  L   GA +V+ ++   Q   I +     +H +R+  
Sbjct: 53  RLPKDLTGLRVLDAGCGAGQMTAELAARGA-QVMAVDISPQLVEIARKRLPPEHQDRVTF 111

Query: 100 IQDDALKVDFEKF 112
              D L  D  +F
Sbjct: 112 ASGDMLADDLGRF 124


>gi|296271435|ref|YP_003654067.1| protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Thermobispora bispora DSM 43833]
 gi|296094222|gb|ADG90174.1| protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Thermobispora bispora DSM 43833]
          Length = 388

 Score = 42.5 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           ES  + +G  V+EIG G G  T +L  L G+  V  +E D       +    +      I
Sbjct: 115 ESLRAGEGHKVLEIGTGMGYSTALLCELVGSHLVTTVEVDPNVAGRAEQALHRAGYEPTI 174

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLP 126
           +  D L          +   RI+A  P
Sbjct: 175 LVRDGLT----GHAEGAPYDRILAKFP 197


>gi|223994161|ref|XP_002286764.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220978079|gb|EED96405.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 574

 Score = 42.5 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           ++I E+        V+E+G G G +   L      + I ++ +  F    K       + 
Sbjct: 57  RRIIEACHKHSYDVVVEVGCGTGEVIGFLDGTDTPR-IGVDINPDFINHCKATYKG--DN 113

Query: 97  LEIIQDDALKVDFEK 111
           LE    DA+K+D   
Sbjct: 114 LEFHVADAMKLDEWW 128


>gi|254253033|ref|ZP_04946351.1| Protein-L-isoaspartate carboxylmethyltransferase [Burkholderia
           dolosa AUO158]
 gi|124895642|gb|EAY69522.1| Protein-L-isoaspartate carboxylmethyltransferase [Burkholderia
           dolosa AUO158]
          Length = 217

 Score = 42.5 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ +         V+ IGAG G LT  LL   A+ V  +E D       ++    
Sbjct: 63  PRVEARVLQELAVKKHENVLLIGAGSGYLT-ALLAHRAQHVTAVEIDPAVAKFAEENLRN 121

Query: 93  HP-NRLEIIQDD 103
           +     E++  D
Sbjct: 122 NGVTNAEVVLGD 133


>gi|121534811|ref|ZP_01666631.1| Methyltransferase type 12 [Thermosinus carboxydivorans Nor1]
 gi|121306606|gb|EAX47528.1| Methyltransferase type 12 [Thermosinus carboxydivorans Nor1]
          Length = 197

 Score = 42.5 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDI 89
           D N +  +    G   G TV+++G G G L   L  +      +  I+            
Sbjct: 22  DDNKIAALVAMIGINTGDTVLDVGCGTGILLPFLKKVLGETGNITAIDFAANMITR-AAA 80

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFN 114
             +H + +  +  D L     + F+
Sbjct: 81  KHRHLSGITYVTGDILDYQPPQAFD 105


>gi|147677796|ref|YP_001212011.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum
           SI]
 gi|146273893|dbj|BAF59642.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum
           SI]
          Length = 244

 Score = 42.5 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 24/67 (35%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+++G G G     L       V  ++K ++     +  + Q    +  +  DA
Sbjct: 33  ISPDDVVLDVGCGTGRTACYLARRFGAHVFALDKSEEMLAKARFRALQEGAEVHFVHGDA 92

Query: 105 LKVDFEK 111
           L + F  
Sbjct: 93  LNMPFRD 99


>gi|332799053|ref|YP_004460552.1| 50S ribosomal protein L11 methyltransferase [Tepidanaerobacter sp.
           Re1]
 gi|332696788|gb|AEE91245.1| Ribosomal protein L11 methyltransferase [Tepidanaerobacter sp. Re1]
          Length = 314

 Score = 42.5 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQD 102
               ITVI++G G G L+     LGA++V+ I++D+    I ++   ++     +  ++ 
Sbjct: 171 IKKDITVIDVGCGSGILSIASGKLGAKQVLAIDRDENAVRIARENIKRNNLETCVRAVKG 230

Query: 103 DALK 106
           D L+
Sbjct: 231 DKLQ 234


>gi|310780620|ref|YP_003968951.1| Methyltransferase type 12 [Ilyobacter polytropus DSM 2926]
 gi|309749943|gb|ADO84603.1| Methyltransferase type 12 [Ilyobacter polytropus DSM 2926]
          Length = 205

 Score = 42.5 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I E+ G      +I+IG G   L + LL +G   +  I+  +     LK+  +++ +
Sbjct: 34  LNLIVET-GIKKN--IIDIGCGKTTLIESLLEMGYDNITGIDLSEIAIGDLKESLAEYCD 90

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           R+ + Q D L +  ++  +I     ++  L       L F+ +  
Sbjct: 91  RVNLFQCDVLSLKLDEKVDIWHDRAVLHFLNSEKDENLYFDQLRR 135


>gi|242398912|ref|YP_002994336.1| SAM-dependent methyltransferase, putative [Thermococcus sibiricus
           MM 739]
 gi|242265305|gb|ACS89987.1| SAM-dependent methyltransferase, putative [Thermococcus sibiricus
           MM 739]
          Length = 253

 Score = 42.5 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDIS--- 90
             +I   +G   G  +IE G G G LT  L  +     K+I  E  + F   L   +   
Sbjct: 82  AAQIVAFAGISPGDIIIEAGVGSGALTLFLANIIGPNGKIIGYEIREDFAK-LAWRNVEW 140

Query: 91  SQHPNRLEIIQDDALK 106
           +   +R+EI   D  +
Sbjct: 141 AGFSDRVEIKLRDIYE 156


>gi|83590481|ref|YP_430490.1| hypothetical protein Moth_1645 [Moorella thermoacetica ATCC 39073]
 gi|83573395|gb|ABC19947.1| hypothetical protein Moth_1645 [Moorella thermoacetica ATCC 39073]
          Length = 292

 Score = 42.5 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 16/191 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102
           G    + V++IG G GN    L    AR+V+ ++   +   ILK+ ++    N +E IQ 
Sbjct: 73  GLEKDLEVLDIGCGTGNYALPLARR-ARRVVALDPAAEMLAILKEKAAAEGINNVEPIQM 131

Query: 103 -----DALKVDFEKFFNI-----SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
                D  K  + + F++     S  I+  A L   +       +++             
Sbjct: 132 AWEEVDLEKQGWREAFDLVLALMSPGIKDAATLQKMMAASRGACFLAGHV-RQEISGRRE 190

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKA--TMMFDISPHVFFPSPKVTSTVIHFIP 210
           L+Q+ +G  +        Y    +L  W       +   +S     P   +    I F P
Sbjct: 191 LWQELIGGEMPPIPADVLY-IFHLLYAWGYNPSLELEHKVSTRELEPDQAIEEMEIFFYP 249

Query: 211 HLNPIPCCLES 221
           HL   P    +
Sbjct: 250 HLELTPAVRRA 260


>gi|15900728|ref|NP_345332.1| hypothetical protein SP_0841 [Streptococcus pneumoniae TIGR4]
 gi|148990349|ref|ZP_01821535.1| pantothenate kinase [Streptococcus pneumoniae SP6-BS73]
 gi|148997084|ref|ZP_01824738.1| hypothetical protein CGSSp11BS70_09990 [Streptococcus pneumoniae
           SP11-BS70]
 gi|194398552|ref|YP_002037476.1| methyltransferase small domain [Streptococcus pneumoniae G54]
 gi|298503153|ref|YP_003725093.1| methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|307067437|ref|YP_003876403.1| 16S RNA G1207 methylase RsmC [Streptococcus pneumoniae AP200]
 gi|14972315|gb|AAK74972.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
 gi|147756784|gb|EDK63824.1| hypothetical protein CGSSp11BS70_09990 [Streptococcus pneumoniae
           SP11-BS70]
 gi|147924378|gb|EDK75469.1| pantothenate kinase [Streptococcus pneumoniae SP6-BS73]
 gi|194358219|gb|ACF56667.1| Methyltransferase small domain [Streptococcus pneumoniae G54]
 gi|298238748|gb|ADI69879.1| methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|306408974|gb|ADM84401.1| 16S RNA G1207 methylase RsmC [Streptococcus pneumoniae AP200]
          Length = 196

 Score = 42.5 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 29  FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           FL D  +  KK+ +              G TV+++G G G L   L+ +   +  +++ +
Sbjct: 30  FLTDAGVFSKKMVDFGSQLLLKCLDVNQGETVLDVGCGYGPLGLSLVKVYGVQATMVDIN 89

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +   + +  + ++  +  I Q +       +F        +I+N P   G +++   I 
Sbjct: 90  TRALDLAQRNAEKNNAKATIFQSNIYARVQGRF------DHVISNPPIRAGKQVVHEIIE 143

Query: 140 -ADTWPPFWESLTLLFQK 156
            +  +      LT++ QK
Sbjct: 144 KSKDFLEIGGDLTIVIQK 161


>gi|326777979|ref|ZP_08237244.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326658312|gb|EGE43158.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 366

 Score = 42.5 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++       DG  V+EIG G G +  +L    G  +V  +E D        D  +
Sbjct: 93  PSMVARMLGLLSVEDGHRVLEIGTGTGYVAALLSERLGEEQVYSVEVDPGLAQQAADAIA 152

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               R  +   D      E+   +    R+IA  
Sbjct: 153 GAGYRPHLHVGDG----AEQIPGMGPVDRLIATC 182


>gi|182437370|ref|YP_001825089.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178465886|dbj|BAG20406.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 333

 Score = 42.5 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++       DG  V+EIG G G +  +L    G  +V  +E D        D  +
Sbjct: 60  PSMVARMLGLLSVEDGHRVLEIGTGTGYVAALLSERLGEEQVYSVEVDPGLAQQAADAIA 119

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               R  +   D      E+   +    R+IA  
Sbjct: 120 GAGYRPHLHVGDG----AEQIPGMGPVDRLIATC 149


>gi|289209616|ref|YP_003461682.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thioalkalivibrio sp. K90mix]
 gi|288945247|gb|ADC72946.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thioalkalivibrio sp. K90mix]
          Length = 218

 Score = 42.5 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
             ++ ++ +++      TV+EIG G G +T  L  L A    +   D+
Sbjct: 63  PVVIGRLLQAAAPQPTETVLEIGTGSGYVTACLARLAAHVDSIERIDE 110


>gi|83854695|ref|ZP_00948225.1| protein-L-isoaspartate O-methyltransferase [Sulfitobacter sp.
           NAS-14.1]
 gi|83842538|gb|EAP81705.1| protein-L-isoaspartate O-methyltransferase [Sulfitobacter sp.
           NAS-14.1]
          Length = 217

 Score = 42.5 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 24  YMGQNF-------LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y+G+N        LL+   L K+ +  G  +   V++IG G G  + ++  + A  V+ +
Sbjct: 48  YLGENISLGEGRVLLEPRTLAKMLDDLGVENDELVLDIGCGYGYSSAVIAHM-AEAVVAV 106

Query: 77  EKDQQFFPILKD-ISSQHPNRLEIIQD 102
           E D+Q     ++ + +   + + +   
Sbjct: 107 EDDEQMAKEAQEALINADIDNVIVHHG 133


>gi|298290183|ref|YP_003692122.1| ribosomal RNA adenine methylase transferase [Starkeya novella DSM
           506]
 gi|296926694|gb|ADH87503.1| ribosomal RNA adenine methylase transferase [Starkeya novella DSM
           506]
          Length = 200

 Score = 42.5 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDIS 90
            ++   I           VIE+GAG G  T+ L+  G    ++++IE    F  +LK   
Sbjct: 33  RSLADIITRGISP-ADAPVIELGAGTGAFTRALIARGVPEDRLVLIELGADFARMLKRRH 91

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +      ++Q +A ++   + F       +++ LP
Sbjct: 92  PEAS----VLQINAAELANMELFGSERAGAVVSGLP 123


>gi|218463559|ref|ZP_03503650.1| probable SAM-dependent methyltransferase protein [Rhizobium etli
           Kim 5]
          Length = 269

 Score = 42.5 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLE 98
            + +G  DG  V+++G G G+LT  L    + ++++ I+    F             R+ 
Sbjct: 29  IDFAGLADGDRVLDVGCGTGSLTFTLAEKPSLQEIVAIDYSPVFVEAAMRR--NTDPRIA 86

Query: 99  IIQDDALKVDFEK-FFNISSPIRIIANLP 126
           I Q DA  + FE   F+ +  + ++  +P
Sbjct: 87  IRQADACALPFEDNRFDRAMSLLVLHFVP 115


>gi|213407354|ref|XP_002174448.1| RNA polymerase specificity factor [Schizosaccharomyces japonicus
           yFS275]
 gi|212002495|gb|EEB08155.1| RNA polymerase specificity factor [Schizosaccharomyces japonicus
           yFS275]
          Length = 366

 Score = 42.5 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 78/228 (34%), Gaps = 41/228 (17%)

Query: 1   MTMNNKSHSLKTILSHYK-IIPKKYMGQ----NF------LLDLNILKKIAESSGSL--- 46
           MT        KT+L   K +   +   Q    +F      L+   +L  + E+SG     
Sbjct: 1   MTFKRLPSLTKTVLEQLKPLKLHRKDSQTQVSHFKHVSSYLIKDELLSSVLEASGLKNAY 60

Query: 47  --DGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             + +T++E+  G G  +  L      ++ +++E  + FF  +  ++     R+ + + D
Sbjct: 61  DNEDMTILEMSPGSGANSIALYNYFQPKRHVLLEPRKAFFSHISSLTKNTDGRMVLHERD 120

Query: 104 A--------LKVDFEKFF----------NISSPIRIIANLPYN-----IGTRLLFNWISA 140
                    L     ++F            +       +LP       +GT+ + + I  
Sbjct: 121 GYSWATYSELYQKHPEYFYQQTSKEVRLGPNRRFLFTGHLPAGTPGILLGTQFVMHLIQR 180

Query: 141 DTWPPFWE-SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           D         L L    E+   + A         LSVL     +  ++
Sbjct: 181 DWLGILGRVRLLLWMSPELAYILLACNGYKSRSSLSVLRELMCQIRVL 228


>gi|161505016|ref|YP_001572128.1| hypothetical protein SARI_03146 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866363|gb|ABX22986.1| hypothetical protein SARI_03146 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 526

 Score = 42.5 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI---VIEKDQQFFPI 85
           FL+D  I+ K+   +     + V+E  AG G     LL    R V+   ++E +++   +
Sbjct: 13  FLID-FIINKLPIKNIKKQSVNVLEPSAGDGRFIDHLLRKNPRIVVDASLVEINKESASL 71

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           L+D    +  ++ +I  D L  +  K F++     I+ N PY     L  N I  
Sbjct: 72  LEDKF-INQEKIRVINSDFLYYESIKKFDV-----IVGNPPYISKKHLTRNQIER 120


>gi|295836997|ref|ZP_06823930.1| methyltransferase [Streptomyces sp. SPB74]
 gi|295826316|gb|EDY44390.2| methyltransferase [Streptomyces sp. SPB74]
          Length = 407

 Score = 42.5 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++  +   +G  DG  V EIG G G  T +L    GA  V  +E D        D   
Sbjct: 125 PSLVADMLGKAGVEDGHGVPEIGTGTGYSTALLCHRLGAEAVTTVEVDPGIARRASDALG 184

Query: 92  QHPNRLEIIQDDAL 105
                   +  D L
Sbjct: 185 TAGYVPHTVTGDGL 198


>gi|172079624|ref|ZP_02709675.2| methyltransferase small domain superfamily [Streptococcus
           pneumoniae CDC1873-00]
 gi|172042082|gb|EDT50128.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae CDC1873-00]
 gi|332203991|gb|EGJ18058.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA47368]
          Length = 193

 Score = 42.5 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 29  FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           FL D  +  KK+ +              G TV+++G G G L   L+ +   +  +++ +
Sbjct: 27  FLTDAGVFSKKMVDFGSQLLLKCLDVNQGETVLDVGCGYGPLGLSLVKVYGVQATMVDIN 86

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +   + +  + ++  +  I Q +       +F        +I+N P   G +++   I 
Sbjct: 87  TRALDLAQRNAEKNNAKATIFQSNIYARVQGRF------DHVISNPPIRAGKQVVHEIIE 140

Query: 140 -ADTWPPFWESLTLLFQK 156
            +  +      LT++ QK
Sbjct: 141 KSKDFLEIGGDLTIVIQK 158


>gi|111657488|ref|ZP_01408234.1| hypothetical protein SpneT_02001313 [Streptococcus pneumoniae
           TIGR4]
 gi|183603472|ref|ZP_02715072.2| methyltransferase small domain superfamily [Streptococcus
           pneumoniae CDC0288-04]
 gi|183603794|ref|ZP_02721432.2| methyltransferase small domain superfamily [Streptococcus
           pneumoniae MLV-016]
 gi|221231625|ref|YP_002510777.1| methyltransferase [Streptococcus pneumoniae ATCC 700669]
 gi|225854347|ref|YP_002735859.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae JJA]
 gi|225861263|ref|YP_002742772.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230687|ref|ZP_06964368.1| methyltransferase small domain [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254394|ref|ZP_06977980.1| methyltransferase small domain [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|183574719|gb|EDT95247.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae CDC0288-04]
 gi|183578489|gb|EDT99017.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae MLV-016]
 gi|220674085|emb|CAR68602.1| putative methyltransferase [Streptococcus pneumoniae ATCC 700669]
 gi|225722342|gb|ACO18195.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae JJA]
 gi|225727139|gb|ACO22990.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|332204845|gb|EGJ18910.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA47901]
          Length = 193

 Score = 42.5 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 29  FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           FL D  +  KK+ +              G TV+++G G G L   L+ +   +  +++ +
Sbjct: 27  FLTDAGVFSKKMVDFGSQLLLKCLDVNQGETVLDVGCGYGPLGLSLVKVYGVQATMVDIN 86

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +   + +  + ++  +  I Q +       +F        +I+N P   G +++   I 
Sbjct: 87  TRALDLAQRNAEKNNAKATIFQSNIYARVQGRF------DHVISNPPIRAGKQVVHEIIE 140

Query: 140 -ADTWPPFWESLTLLFQK 156
            +  +      LT++ QK
Sbjct: 141 KSKDFLEIGGDLTIVIQK 158


>gi|71909535|ref|YP_287122.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Dechloromonas aromatica RCB]
 gi|71849156|gb|AAZ48652.1| Protein-L-isoaspartate(D-aspartate)
           O-methyltransferase:O-methyltransferase, family 3
           [Dechloromonas aromatica RCB]
          Length = 217

 Score = 42.5 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    I  K+ +         V+EIG G G +   LL   A  V+ +E   +   I
Sbjct: 57  GQVMLA-PKIEAKMLQELVLKKTDKVLEIGTGSGYM-AALLAARAEHVVTVESRPELAAI 114

Query: 86  LKDISSQ 92
            K+   +
Sbjct: 115 AKENLER 121


>gi|328717931|ref|XP_001949770.2| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like
           isoform 1 [Acyrthosiphon pisum]
 gi|328717933|ref|XP_003246340.1| PREDICTED: dimethyladenosine transferase 2, mitochondrial-like
           isoform 2 [Acyrthosiphon pisum]
          Length = 416

 Score = 42.5 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 29/177 (16%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKD-QQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           +IE   GP  +TQ LL      + V E +   F   L  + S++ NR++I   + L +  
Sbjct: 82  IIEANPGPCLITQHLLEKTNYNICVYENNYNVFKEFLMAVESKYGNRIKINHGNFLLLWK 141

Query: 110 EKFFNISSPIRIIANLPYNIGTR--------LLFNWISADTWPPFWESLTLLFQKEVGER 161
             F +       ++    +I T              I++     F   L   F  + G  
Sbjct: 142 FGFQDRMDRGDRVSKFLSSIDTPQQPWNQENPSLKIIASLPNKKFMNYLIYSFIFQTGLM 201

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATM--------------MFDI------SPHVFFPS 198
           +  +         SV   +  K  +              +FDI          F+P 
Sbjct: 202 VYGRPEFYLLLSPSVFKRYSCKPIIDKKYYKTQTILFQSIFDIESLKTYPRKAFYPP 258


>gi|289644701|ref|ZP_06476762.1| Methyltransferase type 11 [Frankia symbiont of Datisca glomerata]
 gi|289505490|gb|EFD26528.1| Methyltransferase type 11 [Frankia symbiont of Datisca glomerata]
          Length = 250

 Score = 42.5 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G TV+++G G G  T  LL      +VI ++        L+   +   +RLEI+  D
Sbjct: 33  GETVLDVGCGTGRDTAALLDRLPHGRVIAVDGSAAMLDQLQARLAGRTDRLEIVHAD 89


>gi|170761495|ref|YP_001788270.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A3
           str. Loch Maree]
 gi|226710066|sp|B1KZN5|PRMA_CLOBM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|169408484|gb|ACA56895.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A3
           str. Loch Maree]
          Length = 312

 Score = 42.5 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
             +  TV +IG G G L+     LGA+ VI ++ D       K+ I   + + +EI++ +
Sbjct: 174 IKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGN 233

Query: 104 ALKV 107
            ++V
Sbjct: 234 LMEV 237


>gi|168179388|ref|ZP_02614052.1| ribosomal protein L11 methyltransferase [Clostridium botulinum NCTC
           2916]
 gi|182669588|gb|EDT81564.1| ribosomal protein L11 methyltransferase [Clostridium botulinum NCTC
           2916]
          Length = 312

 Score = 42.5 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
             +  TV +IG G G L+     LGA+ VI ++ D       K+ I   + + +EI++ +
Sbjct: 174 IKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGN 233

Query: 104 ALKV 107
            ++V
Sbjct: 234 LMEV 237


>gi|153940913|ref|YP_001392234.1| ribosomal protein L11 methyltransferase [Clostridium botulinum F
           str. Langeland]
 gi|170754529|ref|YP_001782590.1| ribosomal protein L11 methyltransferase [Clostridium botulinum B1
           str. Okra]
 gi|166223409|sp|A7GHH4|PRMA_CLOBL RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710065|sp|B1ILM1|PRMA_CLOBK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|152936809|gb|ABS42307.1| ribosomal protein L11 methyltransferase [Clostridium botulinum F
           str. Langeland]
 gi|169119741|gb|ACA43577.1| ribosomal protein L11 methyltransferase [Clostridium botulinum B1
           str. Okra]
 gi|295320232|gb|ADG00610.1| ribosomal protein L11 methyltransferase [Clostridium botulinum F
           str. 230613]
          Length = 312

 Score = 42.5 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
             +  TV +IG G G L+     LGA+ VI ++ D       K+ I   + + +EI++ +
Sbjct: 174 IKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGN 233

Query: 104 ALKV 107
            ++V
Sbjct: 234 LMEV 237


>gi|148380909|ref|YP_001255450.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933190|ref|YP_001385217.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935106|ref|YP_001388686.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. Hall]
 gi|226950383|ref|YP_002805474.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A2
           str. Kyoto]
 gi|166223407|sp|A7FXL3|PRMA_CLOB1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223408|sp|A5I638|PRMA_CLOBH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254783051|sp|C1FVT8|PRMA_CLOBJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|148290393|emb|CAL84520.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929234|gb|ABS34734.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931020|gb|ABS36519.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. Hall]
 gi|226840767|gb|ACO83433.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A2
           str. Kyoto]
          Length = 312

 Score = 42.5 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
             +  TV +IG G G L+     LGA+ VI ++ D       K+ I   + + +EI++ +
Sbjct: 174 IKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGN 233

Query: 104 ALKV 107
            ++V
Sbjct: 234 LMEV 237


>gi|302547192|ref|ZP_07299534.1| putative methyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302464810|gb|EFL27903.1| putative methyltransferase [Streptomyces himastatinicus ATCC 53653]
          Length = 284

 Score = 42.5 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             ++ +I  ++G      V+++G G G + +     G+R V+ +E D +   + +  
Sbjct: 51  QALVDRIV-AAGPGPD--VLDVGCGTGIVARQFAEAGSR-VLGVEVDARMADLARRR 103


>gi|326791223|ref|YP_004309044.1| ribosomal protein L11 methyltransferase [Clostridium lentocellum
           DSM 5427]
 gi|326541987|gb|ADZ83846.1| ribosomal protein L11 methyltransferase [Clostridium lentocellum
           DSM 5427]
          Length = 322

 Score = 42.5 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 8   HSLKTILSHYKIIPKKYMG--QNFLLDLNI--LKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           ++ + IL    I P    G  Q++   L I  L++I +         V+++G G G L+ 
Sbjct: 143 NTNRMILE---IDPNSSFGTGQHYTTQLCIEQLEQIIK-----PDAKVLDMGCGSGILSI 194

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDA 104
             L LGA+ V  ++ DQ    I KD   Q+     +  +   + 
Sbjct: 195 ATLLLGAQHVTAVDIDQNSVDIAKDNFIQNGMKQGQFALHCGNV 238


>gi|111223666|ref|YP_714460.1| putative rRNA methylase [Frankia alni ACN14a]
 gi|111151198|emb|CAJ62909.1| Putative rRNA methylase [Frankia alni ACN14a]
          Length = 88

 Score = 42.5 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          + G   G  V+++GAG G LT  LL LGA  VI +E D      L+     
Sbjct: 18 ALGRAPGPRVLDLGAGTGKLTATLLALGAD-VIAVEPDPAMLTELRRALPA 67


>gi|23098561|ref|NP_692027.1| hypothetical protein OB1106 [Oceanobacillus iheyensis HTE831]
 gi|81844319|sp|Q8CUK1|Y1106_OCEIH RecName: Full=Uncharacterized methyltransferase OB1106
 gi|22776787|dbj|BAC13062.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 213

 Score = 42.5 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 17/121 (14%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            +I           V+E G G GNLT+ LL  G + VI IE       I K         
Sbjct: 35  DQILSEVVENSQDKVLEFGVGTGNLTKQLLNAG-KTVIGIEPSTAMREIAKKKLPG---- 89

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           + I+  D +                +     +I +   F+ ++ +      +    + Q 
Sbjct: 90  ITILDGDFINFPT------------LTMPIDSIVSTYAFHHLTDEEKEQAIKQFHEVLQP 137

Query: 157 E 157
           E
Sbjct: 138 E 138


>gi|222479913|ref|YP_002566150.1| methyltransferase small [Halorubrum lacusprofundi ATCC 49239]
 gi|222452815|gb|ACM57080.1| methyltransferase small [Halorubrum lacusprofundi ATCC 49239]
          Length = 207

 Score = 42.5 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRL 97
           A+  G +DG TV+++G G G L       G  +V  IE D+      I  +        +
Sbjct: 41  ADLHGDIDGRTVLDLGTGTGMLALAAALRGPARVFGIELDRGALSTAIENERRVAASASV 100

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             IQ DA ++      ++  P+ ++ N P+
Sbjct: 101 HWIQGDATRLP----LDVPDPVTVLMNPPF 126


>gi|219852672|ref|YP_002467104.1| methyltransferase small [Methanosphaerula palustris E1-9c]
 gi|219546931|gb|ACL17381.1| methyltransferase small [Methanosphaerula palustris E1-9c]
          Length = 204

 Score = 42.5 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G L+  +++++G G G LT     +GA  V  I+ D +   + +  + +       I  D
Sbjct: 44  GDLEDRSILDLGCGTGVLTCGAAMMGAVSVTGIDIDARAIQVAEANARRCGISATFITGD 103

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
              V  +          +I N P+
Sbjct: 104 ---VSDQTLPLDGPFDTVIMNPPF 124


>gi|114707211|ref|ZP_01440109.1| putative methyltransferase (pcm-like) transmembrane protein
           [Fulvimarina pelagi HTCC2506]
 gi|114537407|gb|EAU40533.1| putative methyltransferase (pcm-like) transmembrane protein
           [Fulvimarina pelagi HTCC2506]
          Length = 217

 Score = 42.5 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL++ + L K+ + +       V+++G G G     +L+  A  V+ +E+D++      D
Sbjct: 59  FLMEASPLAKLLQLASIDRDDVVLDVGCGSGY-GAAILSCLASAVVALEEDEELAATATD 117

Query: 89  ISSQHP 94
           I ++H 
Sbjct: 118 ILNRHD 123


>gi|169606448|ref|XP_001796644.1| hypothetical protein SNOG_06265 [Phaeosphaeria nodorum SN15]
 gi|111064976|gb|EAT86096.1| hypothetical protein SNOG_06265 [Phaeosphaeria nodorum SN15]
          Length = 508

 Score = 42.5 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNR 96
           I +++    G TV+++G G G L+      GA+KV  ++         K+I ++  + +R
Sbjct: 186 IEKNAEVFAGKTVLDVGCGTGILSLFCARAGAKKVFAVDN-SGIALRAKEIVAKNGYQDR 244

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIA 123
           +E+IQ      + ++         II+
Sbjct: 245 IEVIQGRVEDFNTQRLIGKEKVDIIIS 271


>gi|162450972|ref|YP_001613339.1| putative SAM-dependent methyltransferase [Sorangium cellulosum 'So
           ce 56']
 gi|161161554|emb|CAN92859.1| putative SAM-dependent methyltransferase [Sorangium cellulosum 'So
           ce 56']
          Length = 277

 Score = 42.5 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDISSQHPN 95
           +++   +G   G  V+++G G G LT+ L  L      V+  D     I L   ++  PN
Sbjct: 41  ERLIAFAGVRRGELVLDLGCGTGGLTRRLAELVGPDGRVLGIDPDEARIALARRTAGAPN 100

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
                    L+        +    R        + +  +F+WI    
Sbjct: 101 ---------LEFQVAAAETLGDVAR--DRPFDLVFSNFVFHWIRDKR 136


>gi|312863385|ref|ZP_07723623.1| methyltransferase small domain protein [Streptococcus vestibularis
           F0396]
 gi|322516989|ref|ZP_08069879.1| methyltransferase domain protein [Streptococcus vestibularis ATCC
           49124]
 gi|311100921|gb|EFQ59126.1| methyltransferase small domain protein [Streptococcus vestibularis
           F0396]
 gi|322124472|gb|EFX95967.1| methyltransferase domain protein [Streptococcus vestibularis ATCC
           49124]
          Length = 196

 Score = 42.5 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 7/117 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            +     G TV+++G G G L   L  +   KV +I+ + +   + K  + ++     I 
Sbjct: 51  NALDLEAGKTVLDVGCGYGPLGISLAKVQGVKVTMIDINSRAIDLAKQNAERNKVEATIF 110

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQK 156
           Q +  K     F        +I+N P   G +++   I           +LT++ QK
Sbjct: 111 QSNIYKNVTGSF------DYVISNPPIRAGKKVVHQVIEEAYDHLNLSGTLTIVIQK 161


>gi|329962821|ref|ZP_08300706.1| methyltransferase domain protein [Bacteroides fluxus YIT 12057]
 gi|328529378|gb|EGF56291.1| methyltransferase domain protein [Bacteroides fluxus YIT 12057]
          Length = 235

 Score = 42.5 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD--ISSQHPNRLEI 99
           +   +   V+++G G G +   L       K+  IE D       K+  + S   +R+E+
Sbjct: 33  APIANVKRVLDVGTGTGLIALQLAQRNPHAKITAIEIDTVAAEQAKNNVLHSPWADRIEV 92

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +  D      +  F++     I++N PY +
Sbjct: 93  LCLDFRNYQQDDKFDL-----IVSNPPYFM 117


>gi|294789078|ref|ZP_06754317.1| adenine/cytosine DNA methyltransferase [Simonsiella muelleri ATCC
           29453]
 gi|294482819|gb|EFG30507.1| adenine/cytosine DNA methyltransferase [Simonsiella muelleri ATCC
           29453]
          Length = 837

 Score = 42.5 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 23/156 (14%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGAR 71
              +           F  +  I+ +I       +    T++E   G GN   +L    A 
Sbjct: 437 AKRHNHSA-------FFTNSFIIDEIVRHLPKFNKDEITIVEPSVGSGNFLPLLFKYYAD 489

Query: 72  ----KVIVIEKDQQFFPILKDISSQ--HPNRLEI--IQDDALKVDFEKFFNISSPIRIIA 123
                +IV++ D     ILK + +Q   P  + I  I  + ++V   +  ++     I+ 
Sbjct: 490 IPKVNLIVVDIDSNMIEILKVMYAQPYLPKNISITFICQNFMQVQLSQPIDL-----IVG 544

Query: 124 NLPYN-IGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           N P+  +G + +  +I  +             +K V
Sbjct: 545 NPPFTKLGKKEISEYIDNNYNKKATNLAEFFLEKAV 580


>gi|114799655|ref|YP_760694.1| putative methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114739829|gb|ABI77954.1| putative methyltransferase [Hyphomonas neptunium ATCC 15444]
          Length = 277

 Score = 42.5 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94
           +  I  S     G +V++IG G G L+  L        V  ++       + K  S+   
Sbjct: 33  VDAIIASVLPSPGQSVMDIGCGAGALSLNLAGSAVNVSVTGVDVSAPLVELAKQRSAAVS 92

Query: 95  NRLEIIQDDA 104
             +E I  DA
Sbjct: 93  AGIEFIVADA 102


>gi|15678174|ref|NP_275289.1| precorrin-8W decarboxylase [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|48427901|sp|O26249|CBIT_METTH RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|2621187|gb|AAB84652.1| precorrin-8W decarboxylase [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 192

 Score = 42.5 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNR 96
           I   +        +++G G G +T  L     R+V  I+++ +     +    +H   + 
Sbjct: 25  IMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDN 83

Query: 97  LEIIQDDA 104
           + +++ DA
Sbjct: 84  VTLMEGDA 91


>gi|304314357|ref|YP_003849504.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587816|gb|ADL58191.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 188

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII 100
           +    G T +++G G G +T  L    A +V  I+K        +    +H   + + +I
Sbjct: 29  ADPGKGDTAVDVGCGTGGVTLELSRR-AGRVYAIDKSPDAISTTEMNLKKHGLGDNVTLI 87

Query: 101 QDDALK 106
             DA++
Sbjct: 88  CSDAVE 93


>gi|156744336|ref|YP_001434465.1| type 11 methyltransferase [Roseiflexus castenholzii DSM 13941]
 gi|156235664|gb|ABU60447.1| Methyltransferase type 11 [Roseiflexus castenholzii DSM 13941]
          Length = 295

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPN 95
           +I  +     G  V+++G G G  T  LL     +V  + +  D       + I+   P 
Sbjct: 66  RIIRAGNVRSGHRVLDVGCGLGG-TLALLNESFDQVELLGLNIDPSQIEQARYIACARPG 124

Query: 96  RL-EIIQDDALKVDFEK 111
            L +    DA+++ +  
Sbjct: 125 NLVDFSIGDAMRLPYAD 141


>gi|4138477|emb|CAA75559.1| adenine methylase [Staphylococcus epidermidis]
 gi|4138480|emb|CAA75562.1| adenine methylase [Staphylococcus epidermidis]
 gi|4138515|emb|CAA75560.1| adenine methylase [Staphylococcus lentus]
          Length = 42

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           QNF+   + + KI  +    +   + EIG+G G
Sbjct: 9  SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKG 42


>gi|78062726|ref|YP_372634.1| methylase involved in ubiquinone/menaquinone biosynthesis-like
           [Burkholderia sp. 383]
 gi|77970611|gb|ABB11990.1| Methylase involved in ubiquinone/menaquinone biosynthesis-like
           protein [Burkholderia sp. 383]
          Length = 282

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 62/220 (28%), Gaps = 30/220 (13%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQHPNRL 97
            +++      +V+++G G G +T  +       V     D   +     +  + +    +
Sbjct: 41  VDAAAPSSARSVLDVGCGTGAVTLAIARRLGADVQCTGIDISARMIDAAQARAERSSVPV 100

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF-----WESLTL 152
             +  D     FE   ++   +  +  + ++   R   N   A           W     
Sbjct: 101 RFVCADVQTHAFEP-ASVDLIVSRLGVMFFDDPVRAFANLRRAARPDARMRFVAWRGAAD 159

Query: 153 LFQKEVGERITAQ------------KNSPHYG----RLSVLTGW-RTKATMMFDISPHVF 195
                + E+  A                  +G      SVL+        +   +     
Sbjct: 160 NPFMTIAEQAAAPLLPNLPARRPGAPGQFGFGDRQRIASVLSNSGWADIAIE-PVDLACA 218

Query: 196 FPSPKVTSTVIHFIPH-LNPIPCCLESLKKIT---QEAFG 231
            P P +   +    P  L  +     + +++    + AF 
Sbjct: 219 LPEPALDDYITRLGPVGLALLEVDEATRRRVVDTMRAAFA 258


>gi|20094397|ref|NP_614244.1| spermidine synthase [Methanopyrus kandleri AV19]
 gi|19887474|gb|AAM02174.1| Spermidine synthase [Methanopyrus kandleri AV19]
          Length = 232

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIV-IEKDQQFFPILKDI-------SSQHPNRLEIIQD 102
           V+EIG G G  T  LL  G  ++IV +E D +   I            +   +R++I+  
Sbjct: 80  VLEIGTGLGRTTWALLRWGDPELIVSVEVDPRMLAIALYRNPVPEFSEALRDDRVKILLG 139

Query: 103 DALKV 107
           DA++V
Sbjct: 140 DAVEV 144


>gi|296879515|ref|ZP_06903498.1| methyltransferase [Clostridium difficile NAP07]
 gi|296429482|gb|EFH15346.1| methyltransferase [Clostridium difficile NAP07]
          Length = 237

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 8/152 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           ++ I +S G      ++E+  G GNLT  L T     +  I+   +   + K+ + +   
Sbjct: 16  IEDIIDSEGV-KVKNILELACGTGNLTIPL-TKKDYDIAGIDISDEMLSVAKEKAEKEGV 73

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            L ++Q D  ++DFE   +    +    +    I        + + T+    +    +F 
Sbjct: 74  ELVLLQQDISELDFE--ISDLDCVLCACDGFNYITYDDDLENVFSKTYELLKQDGIFIFD 131

Query: 156 KEVGERITAQKNSPHYG----RLSVLTGWRTK 183
                ++     +  YG     ++ +      
Sbjct: 132 ISSFYKLANILGNNMYGENREDIAYMWQNYFD 163


>gi|288958915|ref|YP_003449256.1| S-adenosyl-methyltransferase [Azospirillum sp. B510]
 gi|288911223|dbj|BAI72712.1| S-adenosyl-methyltransferase [Azospirillum sp. B510]
          Length = 324

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 30  LLDLNI-----LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           + D  I     L ++  +    DG   ++   G G  ++ LL   + +VI I++D     
Sbjct: 1   MTDPRIHIPVLLDEVIAALAPRDGALYVDGTFGAGGYSRALLRSASCRVIGIDRDPAAIE 60

Query: 85  ILKDISSQHPNRLEIIQDDALKVDF 109
             + ++ + P RL++I+     +D 
Sbjct: 61  RGRVLAQEFPGRLDVIEGRFGDMDQ 85


>gi|283779408|ref|YP_003370163.1| cyclopropane-fatty-acyl-phospholipid synthase [Pirellula staleyi
           DSM 6068]
 gi|283437861|gb|ADB16303.1| Cyclopropane-fatty-acyl-phospholipid synthase [Pirellula staleyi
           DSM 6068]
          Length = 422

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
           ++I E         ++EIG G G L          +V  I   Q+ F    +    +   
Sbjct: 182 QRICEKLDLQASDHLLEIGCGWGGLAIHAAQTCGCRVTGITISQRQFDFATEKVREAGLS 241

Query: 95  NRLEIIQDD 103
           +R+ I+  D
Sbjct: 242 DRVTIVLRD 250


>gi|282858400|ref|ZP_06267580.1| putative site-specific DNA-methyltransferase (adenine-specific)
          [Prevotella bivia JCVIHMP010]
 gi|282588848|gb|EFB93973.1| putative site-specific DNA-methyltransferase (adenine-specific)
          [Prevotella bivia JCVIHMP010]
          Length = 514

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
          K   GQ F +D  I   +    G   G  V+E   G G   + L   G   +   E D+ 
Sbjct: 4  KNKYGQYFTIDE-IASFMVNLIGKDKGAKVLEPSCGEGVFLKYLQRYGFCSLSAYEIDKS 62

Query: 82 FFPI 85
              
Sbjct: 63 LISE 66


>gi|312194765|ref|YP_004014826.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. EuI1c]
 gi|311226101|gb|ADP78956.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. EuI1c]
          Length = 399

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
              +  + E      G  V+EIGAG G    L   L+      V  IE D+      +  
Sbjct: 60  PGTVAGMLEKLDVRPGQRVLEIGAGTGYNAALLAQLVG-PTGSVTTIEYDEAVASAARAA 118

Query: 90  SSQHPNRLEIIQDDAL 105
            S     + ++  D +
Sbjct: 119 LSGLGVAVTVVHGDGM 134


>gi|296138964|ref|YP_003646207.1| modification methylase, HemK family [Tsukamurella paurometabola DSM
           20162]
 gi|296027098|gb|ADG77868.1| modification methylase, HemK family [Tsukamurella paurometabola DSM
           20162]
          Length = 280

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +     G  ++++ AG G L   L   + A +V ++E+D      L D ++    R+ +
Sbjct: 101 AARQVGRGAAIVDLCAGSGALGLYLAATVPAARVALVERDPHALGYLNDNAAGLAGRVTV 160

Query: 100 IQDDALKV--DFEKFFNISSPI-RIIANLPY 127
           +  D   V  D E    +   +  ++ N PY
Sbjct: 161 LDRDVTAVGLDAEIEAALGGTVDLVVCNPPY 191


>gi|255657171|ref|ZP_05402580.1| putative methyltransferase [Clostridium difficile QCD-23m63]
 gi|296451990|ref|ZP_06893705.1| methyltransferase [Clostridium difficile NAP08]
 gi|296259181|gb|EFH06061.1| methyltransferase [Clostridium difficile NAP08]
          Length = 248

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 8/152 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           ++ I +S G      ++E+  G GNLT  L T     +  I+   +   + K+ + +   
Sbjct: 27  IEDIIDSEGV-KVKNILELACGTGNLTIPL-TKKDYDIAGIDISDEMLSVAKEKAEKEGV 84

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            L ++Q D  ++DFE   +    +    +    I        + + T+    +    +F 
Sbjct: 85  ELVLLQQDISELDFE--ISDLDCVLCACDGFNYITYDDDLENVFSKTYELLKQDGIFIFD 142

Query: 156 KEVGERITAQKNSPHYG----RLSVLTGWRTK 183
                ++     +  YG     ++ +      
Sbjct: 143 ISSFYKLANILGNNMYGENREDIAYMWQNYFD 174


>gi|195475955|ref|XP_002090248.1| GE13000 [Drosophila yakuba]
 gi|194176349|gb|EDW89960.1| GE13000 [Drosophila yakuba]
          Length = 289

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 21/104 (20%)

Query: 14  LSHYKIIPKKYMGQN---------------FLLDLNILKKIAESSGSLD-----GITVIE 53
           + H++    ++  QN               F+ D  + + I + +         G  ++E
Sbjct: 42  VRHHENHASEWWNQNGTMSALHALNEIRVPFIRDGIVSRGIVKPAYVNTTKVLFGQNILE 101

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           +G G G LT+ L  LGA +V  I+   +     ++        L
Sbjct: 102 VGCGGGLLTEHLARLGA-QVTGIDLGVKLIEAAREHVKCSSPEL 144


>gi|156369906|ref|XP_001628214.1| predicted protein [Nematostella vectensis]
 gi|156215185|gb|EDO36151.1| predicted protein [Nematostella vectensis]
          Length = 278

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           +    +        TV++ G+G G   + L       V+ +E  +       D++ +   
Sbjct: 55  VDDAIKILRINKEHTVLDFGSGLGGPARHLAANTGCHVVALELQEDMHESAIDLTKRCGL 114

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
            +++++   D LK++  + ++
Sbjct: 115 SDKVKLQCGDILKLEHSESYD 135


>gi|126179898|ref|YP_001047863.1| methyltransferase type 11 [Methanoculleus marisnigri JR1]
 gi|125862692|gb|ABN57881.1| Methyltransferase type 11 [Methanoculleus marisnigri JR1]
          Length = 268

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDIS--SQHPNR 96
                      V+++G G G +T  +     +  V+ ++  +      ++     ++PN 
Sbjct: 28  IGKIKLAGDERVLDLGCGEGKVTAEIAARLPSGSVLGLDVSRDMIAFARERFPPERYPN- 86

Query: 97  LEIIQDDALKVDFEKFFNI 115
           L +I+ D L + F++ F++
Sbjct: 87  LRLIEGDMLDLPFDEEFDV 105


>gi|308050781|ref|YP_003914347.1| methyltransferase small [Ferrimonas balearica DSM 9799]
 gi|307632971|gb|ADN77273.1| methyltransferase small [Ferrimonas balearica DSM 9799]
          Length = 234

 Score = 42.5 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +   D   V+++G G G L  M        +  +E D       +   +  P   RL+++
Sbjct: 30  AALPDQGRVLDLGTGSGLLALMASQRSQAHITAVELDPDACRQAEANFAASPWTERLQLV 89

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           Q D         F+      I+ N PY   
Sbjct: 90  QCDVRDWHPSAPFD-----AIVCNPPYFTS 114


>gi|296108940|ref|YP_003615889.1| ribosomal L11 methyltransferase [Methanocaldococcus infernus ME]
 gi|295433754|gb|ADG12925.1| ribosomal L11 methyltransferase [Methanocaldococcus infernus ME]
          Length = 201

 Score = 42.5 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G TV+++G G G L      LGA++ + I+ D++   + K+ +      +E I +D   +
Sbjct: 46  GKTVLDLGCGTGRLAIGAKLLGAKRAVGIDIDRESIEVAKENAKALGVDVEFICNDVRNI 105

Query: 108 DFEKFFNISSPIRIIANLPY 127
             E F      + +I N P+
Sbjct: 106 KREMF---DEEVVVIQNPPF 122


>gi|225851299|ref|YP_002731533.1| methyltransferase, UbiE/COQ5 family [Persephonella marina EX-H1]
 gi|225646392|gb|ACO04578.1| methyltransferase, UbiE/COQ5 family [Persephonella marina EX-H1]
          Length = 211

 Score = 42.5 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 18/165 (10%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ--DDAL 105
           G  V+EIGAG G    +      + + VIE  ++    LKD + +   +L II+   + L
Sbjct: 37  GGKVLEIGAGTGI--NLDYYKKVKDLTVIEPSKEMLEYLKDKAVRSDIKLHIIEGVGEKL 94

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT-------LLFQK-- 156
             +   F  + S + + +    +   R +   +       F E +           Q   
Sbjct: 95  PFEDNSFDAVVSTLVLCSVKSQSKVLREIKRVLKPGGIFVFIEHVVAPEGSFTYSVQNIL 154

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +   +   +         SV+  +   A +      +V F SP +
Sbjct: 155 QPAWKWLFEGCDIKRDTASVIRRYFPDAYI-----KNVRFKSPFI 194


>gi|212223826|ref|YP_002307062.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1]
 gi|212008783|gb|ACJ16165.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1]
          Length = 272

 Score = 42.5 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 11  KTILSHYKIIPKKYM---GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           +++  +Y +I +  +    Q    ++  +++I  +    +   V++I  G G  T  L+ 
Sbjct: 6   RSLARYYDVIYRARLERISQ----EIGFVERIFRNDARREVRRVLDIACGTGAPTLELVR 61

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
            G  +V+ ++ +++   + +  + +    +E +  DA  +DF++ F+
Sbjct: 62  RG-YEVVGLDINEEMLTVARGKAQREELSVEFMLGDAAALDFQEEFD 107


>gi|190892249|ref|YP_001978791.1| SAM-dependent methyltransferase [Rhizobium etli CIAT 652]
 gi|190697528|gb|ACE91613.1| probable SAM-dependent methyltransferase protein [Rhizobium etli
           CIAT 652]
          Length = 268

 Score = 42.5 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
            + +G  DG  V+++G G G+LT  L    G +++  I+    F             R+ 
Sbjct: 29  IDFAGVADGERVLDVGCGTGSLTFTLAEKPGLQEITAIDYSPVFVEAAMRR--NTDPRIT 86

Query: 99  IIQDDALKVDFEK-FFNISSPIRIIANLP 126
           I Q DA  + FE   F+ +  + ++  +P
Sbjct: 87  IRQADACALPFEDNRFDRAMSLLVLHFVP 115


>gi|11499776|ref|NP_071019.1| rRNA (adenine-N6)-methyltransferase, putative [Archaeoglobus
          fulgidus DSM 4304]
 gi|2648335|gb|AAB89062.1| rRNA (adenine-N6)-methyltransferase, putative [Archaeoglobus
          fulgidus DSM 4304]
          Length = 180

 Score = 42.5 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 13/85 (15%)

Query: 16 HYKIIPKKYMGQNFLLDLNILKKI------AESSG-SLDGITVI-EIGAGPGNLTQMLLT 67
           +K  PKK    + L D    +KI       E          V+ ++GAG G LT  L  
Sbjct: 2  KHKFDPKKA---HIL-DSEWRRKIFPPEKVVEFIESLRPKKNVLFDVGAGTGYLTIPLAR 57

Query: 68 LGARKVIVIEKDQQFFPILKDISSQ 92
          +  +KV  +E  ++   +L+    +
Sbjct: 58 VF-KKVYAVEISEEMAEVLRRRVEE 81


>gi|289582481|ref|YP_003480947.1| methyltransferase type 11 [Natrialba magadii ATCC 43099]
 gi|289532034|gb|ADD06385.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099]
          Length = 235

 Score = 42.5 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 23  KYM---GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           K     GQ  L+D    + + E+   ++   ++EI  G G  T ML   GA  V+ ++  
Sbjct: 19  KRFSKGGQ--LIDRREKQAVLEAIMPVEDRNILEIACGTGRFTVMLAEQGAD-VVGLDIS 75

Query: 80  QQFFP--ILKDISSQHPNRLEIIQDDALKVDFEK 111
                    K   +     LE ++ DA ++ F  
Sbjct: 76  AAMLQQGRTKAQRADLAGTLEFLRGDAGRLPFPD 109


>gi|119900142|ref|YP_935355.1| hypothetical protein azo3853 [Azoarcus sp. BH72]
 gi|119672555|emb|CAL96469.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 384

 Score = 42.5 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRL 97
              +         +IG G G L  +L   G  +V+  ++D +      D   +     R+
Sbjct: 198 VAQAPLPATTLAFDIGTGTGVLAALLARRGVERVVATDQDARALACAADNLGRLGLTGRV 257

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E++Q D         +       ++ N P+
Sbjct: 258 ELLQAD--------LYPPGRAPLVVCNPPW 279


>gi|307566083|ref|ZP_07628541.1| putative site-specific DNA-methyltransferase (adenine-specific)
          [Prevotella amnii CRIS 21A-A]
 gi|307345271|gb|EFN90650.1| putative site-specific DNA-methyltransferase (adenine-specific)
          [Prevotella amnii CRIS 21A-A]
          Length = 515

 Score = 42.5 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
          K   GQ F +D  I   +    G   G  V+E   G G   + L   G   +   E D+ 
Sbjct: 4  KNKYGQYFTIDE-IASFMVNLIGKDKGAKVLEPSCGEGVFLKYLQRYGFCSLSAYEIDKS 62

Query: 82 FFPI 85
              
Sbjct: 63 LISE 66


>gi|226355957|ref|YP_002785697.1| SAM-dependent methyltransferase [Deinococcus deserti VCD115]
 gi|226317947|gb|ACO45943.1| putative SAM-dependent methyltransferase [Deinococcus deserti
           VCD115]
          Length = 246

 Score = 42.5 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                G  V+E+GAG G +T  L   G   VI +E   +     +  +++   + + +Q 
Sbjct: 27  IAQRAGGKVLEVGAGTGRVTTFLSRKGVD-VIGLEPSARMIERARSRAARDGLQPQFVQG 85

Query: 103 DALKVDFEKFFNI 115
           D      ++ F++
Sbjct: 86  DVRTFRLDEQFSL 98


>gi|78048266|ref|YP_364441.1| putative methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036696|emb|CAJ24387.1| putative methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 207

 Score = 42.5 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L++  ++     +++++Q+D
Sbjct: 55  LPGARVLDLFAGSGALGLEAVSRGAAHATLIERDPGLVQRLREHVTRLDAATQVQVLQED 114

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           A++   E+     + I  +           +   + A      W
Sbjct: 115 AVR-WLERAPAALADIVFVDPPFAAGLWPAVLEHLPAHVAADAW 157


>gi|15643837|ref|NP_228885.1| ribosomal protein L11 methyltransferase, putative [Thermotoga
           maritima MSB8]
 gi|38605526|sp|Q9X0G8|PRMA_THEMA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|4981624|gb|AAD36156.1|AE001768_5 ribosomal protein L11 methyltransferase, putative [Thermotoga
           maritima MSB8]
          Length = 264

 Score = 42.5 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             +G TV+++G G G L      LGA +V+ ++ D+Q   + ++   ++         D 
Sbjct: 127 LKEGNTVLDVGCGTGILAIAAKKLGASRVVAVDVDEQAVEVAEENVRKND-------VDV 179

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           L    +    +     I+ +   NI   +    +         +S+ +L
Sbjct: 180 LVKWSDLLSEVEGTFDIVVS---NILAEIHVKLLEDVNRVTHRDSMLIL 225


>gi|322385392|ref|ZP_08059037.1| methyltransferase domain protein [Streptococcus cristatus ATCC
           51100]
 gi|321270651|gb|EFX53566.1| methyltransferase domain protein [Streptococcus cristatus ATCC
           51100]
          Length = 195

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 30/174 (17%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+ +        +       T++++G G G L   L      +V
Sbjct: 24  LGQQMTFLTDAGVFSKKMIDYGSRVLLSALEFNKKETLLDVGCGYGTLGLTLAKAQELEV 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +Q+   + +  +  +    +I Q +  +    +F        II+N P   G ++
Sbjct: 84  TLVDINQRALDLARKNADANQVSADIFQSNVYEQVAGQF------HHIISNPPIRAGKQV 137

Query: 134 LFNWISADTWPPFWES-LTLLFQK------------EVGERITAQKNSPHYGRL 174
           +   IS        +  LT++ QK            EV       K    Y  L
Sbjct: 138 VHEVISGSYDHLLADGDLTIVIQKKQGAPSAKAKMEEVFGNCETLKKDKGYYIL 191


>gi|293607190|ref|ZP_06689531.1| methyltransferase [Achromobacter piechaudii ATCC 43553]
 gi|292814282|gb|EFF73422.1| methyltransferase [Achromobacter piechaudii ATCC 43553]
          Length = 407

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK 111
           IG G G L  ++   G ++VI  + D +     ++   Q     ++++++ D        
Sbjct: 234 IGTGTGVLAAVIARRGGKRVIATDLDPRALACARENLEQLGLSKQVDVVEAD-------- 285

Query: 112 FFNISSPIRIIANLPY 127
            F       ++ N P+
Sbjct: 286 LFPEGRVSLVVCNPPW 301


>gi|325983696|ref|YP_004296098.1| methyltransferase small [Nitrosomonas sp. AL212]
 gi|325533215|gb|ADZ27936.1| methyltransferase small [Nitrosomonas sp. AL212]
          Length = 381

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 36  LKKIAESSGSLDGITVIE-----IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++ IA++   +  + V E     IG G G L   L   G R +   ++D +     +D  
Sbjct: 188 VQLIAQA--PIPELLVTESTAFDIGTGTGVLAAALALRGVRHITATDQDARALNCARDNL 245

Query: 91  SQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           ++    N++E++Q D         F       I+ N P+        + +    + P   
Sbjct: 246 TRLNMLNQVELVQAD--------LFPQGQAALIVCNPPWIPARP--SSPLEHAIFDPDSR 295

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLS 175
            L    Q      +        +  LS
Sbjct: 296 MLRGFLQGLNAHLL---PGGEGWLILS 319


>gi|222635010|gb|EEE65142.1| hypothetical protein OsJ_20224 [Oryza sativa Japonica Group]
          Length = 772

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 62/195 (31%), Gaps = 16/195 (8%)

Query: 33  LNILKKIAESSGSLDGI----TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            +I  ++  ++ +         V + G G G L+     L A  V+ I+ D Q   + ++
Sbjct: 30  PHIASRMLYTAENSFDDITGKVVADFGCGCGTLSVASSLLDAEHVVGIDIDPQSLELAQE 89

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            ++     +++IQ D   ++       +    ++ N P+   +R   +            
Sbjct: 90  NAADLELDIDLIQCDIKNLNLRGLLVDT----VVMNPPFG-TSRKGADMEFISMGMKVAT 144

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF-PSPKVTSTVI- 206
                  K        +    +   +S          + +++     F    +V   V  
Sbjct: 145 RAVYSLHKTSTREHIKKVALRNCNAISAEVL----CELRYNLPRTYKFHKQNEVDIAVDF 200

Query: 207 -HFIPHLNPIPCCLE 220
             F+P        ++
Sbjct: 201 WRFVPRARDEDKPMD 215


>gi|161529283|ref|YP_001583109.1| RNA methylase [Nitrosopumilus maritimus SCM1]
 gi|160340584|gb|ABX13671.1| putative RNA methylase [Nitrosopumilus maritimus SCM1]
          Length = 315

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 19/153 (12%)

Query: 14  LSHYKIIPKKYMGQ-NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
           ++  K  PKK + Q + L D  + + +    G   G TV +   G G  T +        
Sbjct: 145 ITKEKKRPKKAISQPHEL-DWKLTRAMINLVGLKKGETVCDPFCGTGT-TLLEAESMGIH 202

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGT 131
            I ++ D++   I K    ++  +  +I  D  ++ +    F+      I+ + PY   T
Sbjct: 203 GIGLDFDEKMVEITKKNLKENGYKSRVIHSDFQEIKNMADEFDG-----IVTDFPYGKNT 257

Query: 132 R-------LLFNWISADTWPPFWESLTLLFQKE 157
           +       ++  ++   T  P  + + ++++KE
Sbjct: 258 KTSEKPEEIIKKFV---TIVPKRKKMAIMYKKE 287


>gi|120406460|ref|YP_956289.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119959278|gb|ABM16283.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1]
          Length = 228

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISS-QHP 94
            ++   +     + V+EIG G GNLT + L    + ++   + D +     +  ++ + P
Sbjct: 52  DELVTQAELAGELDVLEIGCGTGNLTARALRAAPSARITATDPDPRAVTRARRKAAGEGP 111

Query: 95  NRLE 98
            R E
Sbjct: 112 VRFE 115


>gi|108804210|ref|YP_644147.1| hypothetical protein Rxyl_1372 [Rubrobacter xylanophilus DSM 9941]
 gi|108765453|gb|ABG04335.1| conserved hypothetical protein 95 [Rubrobacter xylanophilus DSM
           9941]
          Length = 177

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDA 104
           +G  V+++ AG G L    L+ G  + + +EK  +    +++    +    R  ++  DA
Sbjct: 38  EGGEVLDLYAGTGALGIEALSRGCDRAVFVEKSPRAAAAIRENLRRTGLEGRARVVVGDA 97

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
           ++       +      I A+ PY I        +    
Sbjct: 98  VREMERLLRDGKVFNLIFADPPYRIAPAGAEGLLRRAE 135


>gi|325981090|ref|YP_004293492.1| 50S ribosomal protein L11 methyltransferase [Nitrosomonas sp.
           AL212]
 gi|325530609|gb|ADZ25330.1| ribosomal protein L11 methyltransferase [Nitrosomonas sp. AL212]
          Length = 305

 Score = 42.5 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH----PNRLEI 99
               G  V++ G G G LT   L LGA  V  I+ D Q     ++ + ++          
Sbjct: 161 NLQPGDKVVDYGCGSGILTVAALKLGASHVAGIDIDPQAVKASQENAVRNHCPASQFFFT 220

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
               A+  D +        +  I   P  +   +L   +    +     +L+ + Q++  
Sbjct: 221 TDHQAVTRDMQPQGQADIVVANILANPLIMLAPVLAQLVRQQGYI----ALSGILQQQAA 276

Query: 160 ERITA 164
           E   A
Sbjct: 277 EVKRA 281


>gi|5051814|emb|CAB45043.1| putative rRNA methylase [Amycolatopsis orientalis]
          Length = 259

 Score = 42.5 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
          +     G  V+++GAG G LT  L+ LGA +VI +E D      L+ 
Sbjct: 35 ALEHAPGPRVLDLGAGTGKLTAALVALGA-EVIAVEPDPAMLTELRR 80


>gi|295084254|emb|CBK65777.1| Predicted O-methyltransferase [Bacteroides xylanisolvens XB1A]
          Length = 236

 Score = 42.5 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IG G G +  ML        K++ +E D+      ++  ++ P   R+E
Sbjct: 33  ASVERARRILDIGTGTGLVALMLAQRSLPDAKIVALEIDEAAAGQARENVARSPWQERIE 92

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           ++Q D  K      F++     I++N PY + +
Sbjct: 93  VVQADFKKHRSSDKFDV-----IVSNPPYFVDS 120


>gi|134098813|ref|YP_001104474.1| tRNA (adenine-N(1)-)-methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291005832|ref|ZP_06563805.1| tRNA (adenine-N(1)-)-methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911436|emb|CAM01549.1| tRNA (adenine-N(1)-)-methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 276

 Score = 42.5 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPI----LKDISSQHPNRL 97
               G  V+E GAG G LT  LL     +  V   E  +         ++      P   
Sbjct: 97  DIRPGARVLEAGAGSGALTCSLLRAVGDEGSVTSYEVREDHAEHAERNVRKFFGDVPGNW 156

Query: 98  EIIQDDALKVDFEK----FFNISSPIRIIANLPYNI 129
            +   D    D  +      ++ SP  ++  +  N+
Sbjct: 157 TLRVGDVKNYDGGQVDRVVLDMLSPWDVLDTVFDNL 192


>gi|332533742|ref|ZP_08409600.1| hypothetical protein PH505_au00170 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036797|gb|EGI73259.1| hypothetical protein PH505_au00170 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 391

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 34/84 (40%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           S+       V+E  AG G+L +ML   GA  V  IE  Q      ++ + Q    +   Q
Sbjct: 109 SALPNTKQPVLEWCAGKGHLGRMLAFNGASNVHSIELQQSLCEQGQNSAQQQGLAMHFSQ 168

Query: 102 DDALKVDFEKFFNISSPIRIIANL 125
            D LK D  +FFN       +   
Sbjct: 169 ADVLKDDITQFFNTDMHAVALHAC 192


>gi|320010100|gb|ADW04950.1| Methyltransferase type 11 [Streptomyces flavogriseus ATCC 33331]
          Length = 256

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP------N 95
           ++  LDG   +++GAG G  T++L   G R V  +E        L       P      N
Sbjct: 37  AARPLDGARAVDVGAGTGIATRLLHRRGCR-VTAVEPGPGMAAELHRTLPSVPVVRGDGN 95

Query: 96  RLEIIQDDALKVDFEKFFNISSP 118
           RL +    A  + + + ++ + P
Sbjct: 96  RLPLADGSADLITYAQSWHWTDP 118


>gi|258544159|ref|ZP_05704393.1| phospholipid N-methyltransferase PmtA [Cardiobacterium hominis ATCC
           15826]
 gi|258520601|gb|EEV89460.1| phospholipid N-methyltransferase PmtA [Cardiobacterium hominis ATCC
           15826]
          Length = 196

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 47  DGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
               +IE GAG G +T+ L     A ++++ E + +    L+D    +     I +    
Sbjct: 52  PNSLIIEAGAGTGAITRELVAHFPANRLLINEVNPRLARRLRDRFPGN----TIRRG--- 104

Query: 106 KVDFEKFFNISSPIRIIANLPY 127
           +V+    +  S+P  II++LP+
Sbjct: 105 RVEELDVWTHSAPKTIISSLPF 126


>gi|254477499|ref|ZP_05090885.1| methyltransferase, FkbM family [Ruegeria sp. R11]
 gi|214031742|gb|EEB72577.1| methyltransferase, FkbM family [Ruegeria sp. R11]
          Length = 253

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 22/147 (14%)

Query: 29  FLLDLNILK---------KIAESSGS-LDGITVIEIGAGPGNLTQMLLT-LGARKVIVIE 77
           FL D  I +         +I  +         V+EIGAG G +  ++      +KV   E
Sbjct: 37  FLSDTRIRRINAGRYEGQEITGALHVVRPDDRVLEIGAGIGLVGAIIANIAKPQKVASFE 96

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            + +  P+++ +   +  +  I   +A+ V   +           A +P+++ +  L + 
Sbjct: 97  ANPELIPVIQQLYEMNGLQERISVRNAVLVSGPERP---------ATMPFHLRSSYLGSS 147

Query: 138 ISADTWPPFWESLTLLFQKEVGERITA 164
           +   +  P    +  +  +++ +   A
Sbjct: 148 LLNPSERP--SRVVEVPTEDLAQVCEA 172


>gi|126659753|ref|ZP_01730881.1| hypothetical protein CY0110_23346 [Cyanothece sp. CCY0110]
 gi|126619001|gb|EAZ89742.1| hypothetical protein CY0110_23346 [Cyanothece sp. CCY0110]
          Length = 241

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 49/131 (37%), Gaps = 24/131 (18%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++ ++ HY ++               L  +      +D   V+++G G G L+  LL   
Sbjct: 23  IRQLIPHYDLM---------------LDTLVACV-PIDTRHVLDLGCGTGELSLKLLKHC 66

Query: 70  AR-KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
              K++ ++   +   + +    + P  +R+  I+ D        + N     +I +N  
Sbjct: 67  PDAKIVALDYSPRMIKMAQSKLEKTPFSDRITFIEADF-----GAWANGEIKEKIGSNFN 121

Query: 127 YNIGTRLLFNW 137
             + +  + + 
Sbjct: 122 ACVSSLAIHHL 132


>gi|78045065|ref|YP_359614.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997180|gb|ABB16079.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 191

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           +         V E+G+G G +T  L L+L   KV   EKD Q   ++K+   +   R  +
Sbjct: 25  KKLNLKGDEVVYEVGSGSGTITVELALSLPRGKVYAFEKDLQRLTVIKENLRRFSVRNVV 84

Query: 100 IQDDALKVDFEKFFNISSPIRII 122
           +   AL  D   +     P  ++
Sbjct: 85  LLPQALPCDLSAY---PPPDMVV 104


>gi|328543818|ref|YP_004303927.1| L-isoaspartyl protein carboxyl methyltransferase protein
           [polymorphum gilvum SL003B-26A1]
 gi|326413562|gb|ADZ70625.1| L-isoaspartyl protein carboxyl methyltransferase protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 226

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + E+       TV+E+G G G  T +L  L AR+V  +++      + +   + 
Sbjct: 75  PSLVAAMVEALDVQPDSTVLEVGTGSGYQTAVLTHL-ARQVYSVDRYASLVTLARQRLAA 133

Query: 93  HP-NRLEIIQDDAL 105
                 EI   D L
Sbjct: 134 LRIGNAEIQHADGL 147


>gi|300865550|ref|ZP_07110330.1| CrpC (fragment) [Oscillatoria sp. PCC 6506]
 gi|300336451|emb|CBN55480.1| CrpC (fragment) [Oscillatoria sp. PCC 6506]
          Length = 812

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 45  SLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
            +    V+E+G G    L +  +  GA+KV  IE+ ++ + + K         N++ +I 
Sbjct: 333 LVKDRVVVEVGTGKDAILARFCVEAGAKKVYAIERSEESYRLAKACIKNLGWENKITLIH 392

Query: 102 DDALKVDFEKFFNIS 116
            DA +V+  +  ++ 
Sbjct: 393 GDATQVNLPEQADVC 407


>gi|253701861|ref|YP_003023050.1| protein-L-isoaspartate O-methyltransferase [Geobacter sp. M21]
 gi|251776711|gb|ACT19292.1| protein-L-isoaspartate O-methyltransferase [Geobacter sp. M21]
          Length = 219

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E+   L G  V+EIG G G     +L+  A +V  +E+        +     
Sbjct: 69  PYIVAYMIEALELLGGERVLEIGTGSGY-AAAVLSRCAAQVYTVERIPSLAAGARARLKD 127

Query: 93  H-PNRLEIIQDD 103
              + + +   D
Sbjct: 128 LGYHNVTVHLGD 139


>gi|156932882|ref|YP_001436798.1| hypothetical protein ESA_00683 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531136|gb|ABU75962.1| hypothetical protein ESA_00683 [Cronobacter sakazakii ATCC BAA-894]
          Length = 256

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 63/221 (28%), Gaps = 34/221 (15%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNIL-----KKIA--ESSGSLDGITVIEIGAGP 58
           K    KT L       K    Q F+             I     +       V++IGAG 
Sbjct: 11  KMSQPKTPLRRNGFTFK----QFFVAHDRCAMKVGTDGILLGAWAPVAKAQRVLDIGAGS 66

Query: 59  GNLTQMLLTLGARKVI--VIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFN 114
           G LT ML       V    +E D Q     ++     P   R+++   D           
Sbjct: 67  GLLTLMLAQRTEDTVTLDAVELDAQAAEQARENIDASPWAARIQVHSADI---QTWTQQQ 123

Query: 115 ISSPIRIIANLPYN-----IGTRL--LFNWISADTWPPFWESLTLLFQKE-VGERITAQK 166
                 I++N PY        T       + +             L  +E     +  + 
Sbjct: 124 TQRYELIVSNPPYYDKGVACATPAREQARYTTTLDHGTLLACAAQLITEEGFFCVVLPES 183

Query: 167 NSPHYGRLSVLTGWRTK-----ATMMFDISPH---VFFPSP 199
           +   + RL+   GW  +     A     +       F PSP
Sbjct: 184 SGEAFSRLAGEQGWHLRLRTDVAENAGKLPHRVLLAFSPSP 224


>gi|322807274|emb|CBZ04848.1| ribosomal protein L11 methyltransferase [Clostridium botulinum
           H04402 065]
          Length = 160

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
             +  TV +IG G G L+     LGA+ VI ++ D       K+ I   + + +EI++ +
Sbjct: 22  IKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGN 81

Query: 104 ALKV 107
            ++V
Sbjct: 82  LMEV 85


>gi|304314893|ref|YP_003850040.1| RNA methylase [Methanothermobacter marburgensis str. Marburg]
 gi|302588352|gb|ADL58727.1| predicted RNA methylase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 249

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 27  QNFLLDLNIL----KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           Q+ L D   L    + IA ++  L       +GAG G L+    +  A  VI IE+D + 
Sbjct: 10  QHLLRDHERLSAFYEAIASAAHGLTYD----LGAGSGVLS-FFASEYADHVIAIERDPRI 64

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
                +  S   N + ++ +DAL+ +F++  +
Sbjct: 65  AACAWENLSGLEN-VTVVNEDALEYEFKERAD 95


>gi|329737435|gb|EGG73689.1| methyltransferase domain protein [Staphylococcus epidermidis
           VCU028]
          Length = 239

 Score = 42.1 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I E     D   +++IG G GNLTQ+L +LG  +V  ++       I +  +    N+++
Sbjct: 26  IVEHFLPSDSQDLLDIGCGTGNLTQLLTSLG--EVTGMDISVDMLSIARQKT----NQVK 79

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
            I+ +    +  K FN+   I I  +    + T           +    ++   +F    
Sbjct: 80  WIEGNMTHFNLNKKFNM---ITIFCDSLNYLETLNDVKMTFERVYQHLNKNGVFIFDVHT 136

Query: 159 GERITAQKNSPHY 171
             ++    N+  Y
Sbjct: 137 VHKMKTLFNNKSY 149


>gi|260684762|ref|YP_003216047.1| putative methyltransferase [Clostridium difficile CD196]
 gi|260688420|ref|YP_003219554.1| putative methyltransferase [Clostridium difficile R20291]
 gi|260210925|emb|CBA66159.1| putative methyltransferase [Clostridium difficile CD196]
 gi|260214437|emb|CBE06880.1| putative methyltransferase [Clostridium difficile R20291]
          Length = 285

 Score = 42.1 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           ++ I +S G      ++E+  G GNLT  L       +  I+   +   + ++ + +   
Sbjct: 64  IEDIIDSEGV-KVKNILELACGTGNLTIPLTKKNYD-IAGIDISDEMLSVAREKAEKEGV 121

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            L ++Q D  ++DFE   +    +    +    I        + + T+    +    +F 
Sbjct: 122 ELVLLQQDISELDFE--ISDLDCVLCACDGFNYITYDDDLENVFSKTYELLKKDGIFIFD 179

Query: 156 KEVGERITAQKNSPHYG----RLSVLTGWRTK 183
                ++     +  YG     ++ +      
Sbjct: 180 ISSFYKLANILGNNMYGENREDIAYMWQNYFD 211


>gi|303271673|ref|XP_003055198.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463172|gb|EEH60450.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 823

 Score = 42.1 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 55/184 (29%), Gaps = 18/184 (9%)

Query: 32  DLNILKKI--AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           D  I ++I         +G  V+++GAG G L+ M    GA  V+  E         +  
Sbjct: 581 DAAIARQIAKINERDPRNGAHVLDVGAGSGLLSMMAARAGAESVLACEWHGALATCARRN 640

Query: 90  SSQH--PNRLEIIQDDALKVD--FEKFFNISSPIRIIANLPYNIGTRLLFNWISADT--- 142
            + +   +++ +   D  K+    +   +    + ++      +    +   ++      
Sbjct: 641 VAANKMSSQVTVAHADVAKLSRGHKGARHEGYNMVVVDMFDAGLTGEHVMWMLANARKNV 700

Query: 143 --WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR----TKATMMFDISPHVFF 196
                              E  T++        +S    +R     +   + D+      
Sbjct: 701 VTPEHVVVPAAATMYCMGVEAYTSEVCGFD---MSAFNKYRWDKTYETVRIGDVPHRALT 757

Query: 197 PSPK 200
              K
Sbjct: 758 KPKK 761


>gi|221201134|ref|ZP_03574174.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           multivorans CGD2M]
 gi|221206413|ref|ZP_03579426.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           multivorans CGD2]
 gi|221213751|ref|ZP_03586725.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           multivorans CGD1]
 gi|221166540|gb|EED99012.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           multivorans CGD1]
 gi|221173722|gb|EEE06156.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           multivorans CGD2]
 gi|221178984|gb|EEE11391.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           multivorans CGD2M]
          Length = 217

 Score = 42.1 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ +         V+ IGAG G LT ++    A  V  +E D        D   +
Sbjct: 63  PRVEARVLQELAVKKHENVLVIGAGSGYLTALIAHR-ALHVTAVEIDPAIAKFAADNLRE 121

Query: 93  HP-NRLEIIQDD 103
           +     E++  D
Sbjct: 122 NAVTNAEVVLGD 133


>gi|148655244|ref|YP_001275449.1| type 11 methyltransferase [Roseiflexus sp. RS-1]
 gi|148567354|gb|ABQ89499.1| Methyltransferase type 11 [Roseiflexus sp. RS-1]
          Length = 273

 Score = 42.1 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +   I  +        ++E G G G +    +  G      ++  ++    L+     
Sbjct: 25  ERLRDAIIAALELSRSAQILEAGVGTGRIAIPFIEAG-YFYAGVDLSRRMMGQLRRKLDS 83

Query: 93  HPNRLEIIQDDALKVDFEK 111
             +R+ +I  DA+ +    
Sbjct: 84  RVHRVHLICGDAMHLPIAD 102


>gi|150018134|ref|YP_001310388.1| hypothetical protein Cbei_3305 [Clostridium beijerinckii NCIMB
           8052]
 gi|149904599|gb|ABR35432.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 186

 Score = 42.1 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 5/134 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI--EKDQQFFPILKDI 89
              + +K+       +   +IE G G G  T  L+    ++ +++  E +++F   L++ 
Sbjct: 24  SEKLAEKMVGDIDFKNSEVIIEYGPGTGVFTDKLVKRKKKETVLMLFEYNEEFCRQLEEK 83

Query: 90  SSQHPNRLEIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
                + + II D A  VD    K+        +      ++   +    +         
Sbjct: 84  YKGEDD-IIIINDSAENVDKHLAKYNLSRVDYVVSGLPFASLPKDVSNKILRQTRNILKR 142

Query: 148 ESLTLLFQKEVGER 161
             L + FQ  + ++
Sbjct: 143 NGLFITFQYTLLKK 156


>gi|300087265|ref|YP_003757787.1| methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299526998|gb|ADJ25466.1| Methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 222

 Score = 42.1 bits (98), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPN 95
           ++    +G   G  V++I  G G+ TQ++       +V  ++       + +  ++    
Sbjct: 45  RRFVGLAGLKPGDQVLDICCGTGSTTQLIAERLDQGRVTGVDLSPDMLAVARKKTAGARV 104

Query: 96  RLEIIQDDALKVDFEKFFNI 115
             E+   D L  D E F ++
Sbjct: 105 SFEMASVDRLPFDDESFDHV 124


>gi|256832432|ref|YP_003161159.1| tRNA methyltransferase complex GCD14 subunit [Jonesia denitrificans
           DSM 20603]
 gi|256685963|gb|ACV08856.1| tRNA methyltransferase complex GCD14 subunit [Jonesia denitrificans
           DSM 20603]
          Length = 341

 Score = 42.1 bits (98), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD 88
             +I   +    G  V+E G G G LT  LL       +V  IE+   F  I +D
Sbjct: 95  AAQIVGMADIFPGARVVEAGVGSGALTMSLLRAVGDGGQVHSIERRDDFAAIARD 149


>gi|229016798|ref|ZP_04173728.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus AH1273]
 gi|229023003|ref|ZP_04179520.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus AH1272]
 gi|228738309|gb|EEL88788.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus AH1272]
 gi|228744534|gb|EEL94606.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus AH1273]
          Length = 258

 Score = 42.1 bits (98), Expect = 0.083,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            +  I +    +    VI+IG G G  T+ L  +GA+ V+ ++  ++     K+     P
Sbjct: 26  TINNIVD----VQNKQVIDIGCGGGIYTKELALMGAKSVVGLDFSKEILQAAKENCKGFP 81

Query: 95  NRLEIIQDDA 104
           N +  I  DA
Sbjct: 82  N-ISFIHGDA 90


>gi|220910013|ref|YP_002485324.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219866624|gb|ACL46963.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 624

 Score = 42.1 bits (98), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 8/135 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGN--LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            +         G  V+EIG G G   LT         KV  ++  Q      +    +H 
Sbjct: 392 ARAIAQLQLRSGEAVLEIGCGVGGDLLTLAHAVGPEGKVTGVDSSQTMIAEAQSRLGEHS 451

Query: 95  N-RLEIIQDDALKVDFEKFFNISSPIRIIANL-PYNIGTRLLFNWISADTW---PPFWES 149
           N  L +   D L    E F  +     ++    P N+    L        W    P W++
Sbjct: 452 NIELVVAPADVLPFPDESFDAVRFDRVLLHVENPLNVLRETLRVLRPGGRWLATEPDWDT 511

Query: 150 LTLLFQ-KEVGERIT 163
           LT+  Q +E+   + 
Sbjct: 512 LTIAAQEREITRHVI 526


>gi|323484008|ref|ZP_08089381.1| methyltransferase [Clostridium symbiosum WAL-14163]
 gi|323402724|gb|EGA95049.1| methyltransferase [Clostridium symbiosum WAL-14163]
          Length = 252

 Score = 42.1 bits (98), Expect = 0.084,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                  +G +V+++G G G LT+ L  LG +       D    P L  I+ ++   L  
Sbjct: 25  IGLINREEGASVLDLGCGNGALTKKLSELGFK---ASGLDAS--PELLQIARKNYPELTF 79

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
            Q DA + +     ++             I +  + +WI+ D  P     + 
Sbjct: 80  YQGDATEFELPGKVDV-------------IFSNAVLHWIAKDKQPDLLRCVY 118


>gi|294500464|ref|YP_003564164.1| biotin biosynthesis protein BioC [Bacillus megaterium QM B1551]
 gi|294350401|gb|ADE70730.1| biotin biosynthesis protein BioC [Bacillus megaterium QM B1551]
          Length = 274

 Score = 42.1 bits (98), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           ++EIG G G LTQ+L     +  I  ++       + K    +  +R+  I  D  ++  
Sbjct: 47  ILEIGCGTGYLTQLLCEKFPKATITAVDLSSGMIEVAKKKVME--DRVSFICGDIEEISI 104

Query: 110 EKFFNI 115
           E+ +++
Sbjct: 105 ERRYDL 110


>gi|268507180|ref|YP_003293979.1| adenine-specific DNA methylase [Escherichia coli ETEC H10407]
 gi|266265501|dbj|BAI49205.1| adenine-specific DNA methylase [Escherichia coli ETEC H10407]
 gi|309705567|emb|CBJ04412.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
          Length = 187

 Score = 42.1 bits (98), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVESNSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|256370927|ref|YP_003108751.1| Methyltransferase type 11 [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007511|gb|ACU53078.1| Methyltransferase type 11 [Acidimicrobium ferrooxidans DSM 10331]
          Length = 995

 Score = 42.1 bits (98), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 32  DLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           DL I+ ++A     L    G  V+++G+G G +   L +LG R +  IE D      L+ 
Sbjct: 449 DLAIVTRVARYLAPLLAIGGGRVLDVGSGHGAMLGQLRSLGVRAL-GIELDPARVEHLR- 506

Query: 89  ISSQHPNRLEIIQDDALKV 107
                 +  ++++ DAL+V
Sbjct: 507 -----ASGFDVLEGDALEV 520


>gi|329848445|ref|ZP_08263473.1| methyltransferase type 11 [Asticcacaulis biprosthecum C19]
 gi|328843508|gb|EGF93077.1| methyltransferase type 11 [Asticcacaulis biprosthecum C19]
          Length = 250

 Score = 42.1 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            L ++   +    G++V+E  AG GN+ Q +L  G R + V    + F  +  +I+    
Sbjct: 88  TLDRVIALAHLEPGLSVLEPSAGTGNMVQRILDAGCRVLAVEFLPRNFKQLAMNITG--- 144

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + L  +  D L +D    F+     R++ N P+
Sbjct: 145 DGLVALCCDFLALDIPDLFD-----RVVMNPPF 172


>gi|323693393|ref|ZP_08107607.1| methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323502542|gb|EGB18390.1| methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 252

 Score = 42.1 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                  +G +V+++G G G LT+ L  LG +       D    P L  I+ ++   L  
Sbjct: 25  IGLINREEGASVLDLGCGNGALTKKLSELGFK---ASGLDAS--PELLQIARKNYPELTF 79

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
            Q DA + +     ++             I +  + +WI+ D  P     + 
Sbjct: 80  YQGDATEFELPGKVDV-------------IFSNAVLHWIAKDKQPDLLRCVY 118


>gi|310830005|ref|YP_003962362.1| hypothetical protein ELI_4465 [Eubacterium limosum KIST612]
 gi|308741739|gb|ADO39399.1| hypothetical protein ELI_4465 [Eubacterium limosum KIST612]
          Length = 194

 Score = 42.1 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D   +  I   +   +   +++I  G G L   LL    ++++ I+   Q   + +   
Sbjct: 23  HDAKKIDTIVSLAQLPENSRILDIATGTGVLIPRLLDANPQEIVAIDLSSQMLAVARK-- 80

Query: 91  SQHPN-RLEIIQDDALKVDFEKF 112
            +HP+ R+    +D    + + F
Sbjct: 81  -KHPDPRVHFQSEDFYCFEDDSF 102


>gi|149202511|ref|ZP_01879483.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Roseovarius sp.
           TM1035]
 gi|149143793|gb|EDM31827.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Roseovarius sp.
           TM1035]
          Length = 423

 Score = 42.1 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 26  GQNFLLDLNILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           GQN L    I K   + +  G   G  V+EIG G G   +        +V  +    +  
Sbjct: 183 GQNSLEQAQIAKYASMVDQMGVKPGDHVLEIGCGWGGFAEYAAKERGLRVTGLTISAEQL 242

Query: 84  PILKDISSQ--HPNRLEIIQDD 103
              +D  ++    +R+ +   D
Sbjct: 243 KYAQDRIARAGLSDRVTLKLQD 264


>gi|158316459|ref|YP_001508967.1| spermidine synthase [Frankia sp. EAN1pec]
 gi|158111864|gb|ABW14061.1| Spermine synthase [Frankia sp. EAN1pec]
          Length = 522

 Score = 42.1 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 21/188 (11%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQ 92
              + +   + + D   V+ +G G G   + LL     R+V+ +E D +   + +   ++
Sbjct: 289 RYTEALVAPALARDPARVLVLGGGDGLAARELLRHPTVRQVVQVELDPRMIELARTTFAR 348

Query: 93  ------HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
                 +  R+ ++  DA    + +         ++ ++P +  T  L    S + +   
Sbjct: 349 LNRAALNDPRVRVVVADA--FRWLRDPPPEPFDAVVVDMP-DPDTPTLGRLYSQEFYGLV 405

Query: 147 WESLTLLFQKEV-GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF--------- 196
              L       V      A  ++      +V            D+     +         
Sbjct: 406 RAVLAPGGLLTVQAGSPYATPSAYWRTVSTVRAAGLATTPYHVDVPSFGDWGFVLATTGG 465

Query: 197 -PSPKVTS 203
            P P V S
Sbjct: 466 TPPPLVLS 473


>gi|332795956|ref|YP_004457456.1| protein-L-isoaspartate carboxylmethyltransferase, Pcm [Acidianus
           hospitalis W1]
 gi|332693691|gb|AEE93158.1| protein-L-isoaspartate carboxylmethyltransferase, Pcm [Acidianus
           hospitalis W1]
          Length = 232

 Score = 42.1 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +      G  V+EIG G G  T ++  +   KV+ IE + + +     + S++ N ++++
Sbjct: 64  DELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSIEINDEMYKYSSRLLSEYQN-VKLV 121

Query: 101 QDD 103
             D
Sbjct: 122 LGD 124


>gi|311279574|ref|YP_003941805.1| Methyltransferase type 12 [Enterobacter cloacae SCF1]
 gi|308748769|gb|ADO48521.1| Methyltransferase type 12 [Enterobacter cloacae SCF1]
          Length = 194

 Score = 42.1 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 31/178 (17%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDI 89
              +  ++A  +      TV E+GAG G LT+ LL     A ++   E        L+ +
Sbjct: 37  SPWLCNRMASLASWETATTVAELGAGDGVLTRRLLKRLSPAAQLDAWEIQPGLARQLQTL 96

Query: 90  SSQHPNRLEIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           + Q   RL++I   A ++D          P+  I   P           +          
Sbjct: 97  ADQ-DRRLQVITRSAEQLDRNYDLIFSCLPLLSIPLFPR-------LRILQQIRKQLNPG 148

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLS-VLTGWRTKATMMFDI----SPHVFFPSPKV 201
            + + FQ               Y  LS  L     +   +++I       V+  +P+V
Sbjct: 149 GMLIQFQ---------------YSPLSEKLLSRYFEWRRVYEIRNFPPAWVYVCTPRV 191


>gi|301055884|ref|YP_003794095.1| hypothetical protein BACI_c43610 [Bacillus anthracis CI]
 gi|300378053|gb|ADK06957.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 212

 Score = 42.1 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNRLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|229166384|ref|ZP_04294141.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus AH621]
 gi|228617126|gb|EEK74194.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus AH621]
          Length = 258

 Score = 42.1 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            +  I +    +    VI+IG G G  T+ L  +GA+ V+ ++  ++     K+  +  P
Sbjct: 26  TINNIVD----VQNKQVIDIGCGGGIYTKELALMGAKNVVGLDFSKEILQAAKENCNAFP 81

Query: 95  NRLEIIQDDA 104
           N +  I  DA
Sbjct: 82  N-ISFIHGDA 90


>gi|331019585|gb|EGH99641.1| glycosyl transferase, group 2 family protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 1417

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD- 102
             L+G +V+EIGAG G +++ L   GA  V+ +E   +   I    +    N + ++ + 
Sbjct: 81  HLLEGKSVLEIGAGCGAISRYLGEAGAN-VLSLEGSPRRAAIAASRTRDLDN-VTVLAER 138

Query: 103 -DALKVDFE 110
            D LKVD +
Sbjct: 139 FDDLKVDQQ 147


>gi|285808552|gb|ADC36073.1| methyltransferase type 12 [uncultured bacterium 164]
          Length = 239

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N  + I E      G  ++E+GAG G  T++LL      +  +E   + F  L++  S 
Sbjct: 19  ENYHRWILEEFRPFLGTRLVEVGAGTGLFTRLLLNEDLESLTAVEP-SEMFERLQEALSI 77

Query: 93  HPNRLEII-QDDALKVDFEKFFNISSPIRII 122
            P  + +       +   ++  + + P  II
Sbjct: 78  TPVGVHVHLHRAIFEQVHQRIRDEAKPDSII 108


>gi|307825599|ref|ZP_07655817.1| RNA methyltransferase, TrmA family [Methylobacter tundripaludum
           SV96]
 gi|307733485|gb|EFO04344.1| RNA methyltransferase, TrmA family [Methylobacter tundripaludum
           SV96]
          Length = 444

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           N+ ++  ++ ++ E+    +  +V+++  G GN T  +    A  V+ +E DQ      K
Sbjct: 279 NYEINKQMINRVLETLALNENDSVLDLFCGLGNFTLPMAKF-AGHVVGVEGDQPLVNHAK 337

Query: 88  DISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           + +  +    +E    D  K   ++ +      +I+ +      + +L ++
Sbjct: 338 ENARHNGIENVEFYAADLSKDISDQPWANRKYNKIMLDPSRAGASDVLHHF 388


>gi|299535790|ref|ZP_07049111.1| ribosomal protein L11 methyltransferase [Lysinibacillus fusiformis
           ZC1]
 gi|298728990|gb|EFI69544.1| ribosomal protein L11 methyltransferase [Lysinibacillus fusiformis
           ZC1]
          Length = 313

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
             +G TV++IG G G L+     LGA+ V  ++ D+      ++  +  +  +++ +   
Sbjct: 173 IKEGDTVVDIGTGSGVLSIGAALLGAKSVHALDLDEVAVRSARENVALNKVEDKVAVFHG 232

Query: 103 DALKVDFEK 111
           + L    E 
Sbjct: 233 NLLDTVKEP 241


>gi|225710376|gb|ACO11034.1| Methyltransferase-like protein 5 [Caligus rogercresseyi]
          Length = 210

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 2/138 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           + + + ++G+G G L      L A  V   E D     +  + +S+  N ++ +  D L 
Sbjct: 49  EDLHIADLGSGTGMLAIGASCLDAGAVTAFEIDPDAIEVASNNASELSNNIDFVCMDVLS 108

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
                     S   +I N P+        + +                 K        +K
Sbjct: 109 SFNHMKSPSISVDTVIMNPPFGTKKNKGIDMLFLKAALNMASRAVYSLHKTSTRAHIVKK 168

Query: 167 NSPHYG-RLSVLTGWRTK 183
               +G  + VL   R  
Sbjct: 169 A-KEWGVVMEVLAELRYD 185


>gi|242021425|ref|XP_002431145.1| hypothetical protein Phum_PHUM513400 [Pediculus humanus corporis]
 gi|212516394|gb|EEB18407.1| hypothetical protein Phum_PHUM513400 [Pediculus humanus corporis]
          Length = 400

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 25/191 (13%)

Query: 29  FLLDLNILKKIAES-SGSLDG--ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           F +D N+ + IA++    + G    + E   G G +T  LL     K+++++++     I
Sbjct: 93  FPVDYNVAENIAKTFLKLIKGNKYVIFETNPGCGLITYHLLKKNIDKLVILQENNCQLEI 152

Query: 86  LKDISSQHPNRLEIIQDD------------ALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           L D+ +Q+ +R  +++ +             L +  E          ++   P  +    
Sbjct: 153 LNDLINQNEDRNHVMKRNKNFFGTWKKANVFLDLLNELKLGKGEKYAVLGVTPDFLFVSQ 212

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT------KATMM 187
               I           + L     VG+ +    N   Y R  V  G             +
Sbjct: 213 FVKAIVYRELHNNLNDIELYL--IVGQNVYN--NFKFYKRSYVRFGTYCMFHLFFNIEYI 268

Query: 188 FDISPHVFFPS 198
              S + F+P 
Sbjct: 269 KTYSRNSFYPP 279


>gi|254463953|ref|ZP_05077364.1| UbiE/COQ5 methyltransferase familiy protein [Rhodobacterales
           bacterium Y4I]
 gi|206684861|gb|EDZ45343.1| UbiE/COQ5 methyltransferase familiy protein [Rhodobacterales
           bacterium Y4I]
          Length = 258

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           ++     G  ++++G G G LT+ L      A  V  ++         +       N   
Sbjct: 30  DALAPQPGDRILDLGCGNGLLTEELARATGPAGHVTGLDASPDMLAAARQRLQGRSNT-T 88

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           + + DA  + FE     S    +   +   I +R
Sbjct: 89  LTESDAASLPFEP---ESFDKAVSVQVFEYITSR 119


>gi|115497492|ref|NP_001070105.1| phosphoethanolamine methyltransferase [Danio rerio]
 gi|115313524|gb|AAI24222.1| Zgc:153034 [Danio rerio]
          Length = 489

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +   +L    V+E+GAG G  T+ L+   AR V  ++  ++F        + H   +E
Sbjct: 34  ILDLLPALSESCVLELGAGIGRYTKHLIGR-ARHVTAVDFMEKFVEK-NRQDNGHLGSVE 91

Query: 99  IIQDDALKVDFEK----FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            IQ D  K+DF +        +  +  +++    +       W+    +  F ES 
Sbjct: 92  FIQADVTKLDFPEHSFDLVFSNWLLMYLSDQELQLLAEKFLRWLRPGGFLFFRESC 147


>gi|56695236|ref|YP_165584.1| hypothetical protein SPO0321 [Ruegeria pomeroyi DSS-3]
 gi|56676973|gb|AAV93639.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 257

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 40  AESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           A S  +  G +V+E+G G G  +  +   +    +  +E    +  + +  ++ +   L+
Sbjct: 38  AASVAAQTGQSVLELGCGAGAAILSLGARVPDLALTGVELQPGYADLARRNAAANDIALD 97

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +++ D   +   +     S   +IAN PY + 
Sbjct: 98  VVEGDIAAL--PQALRQQSFDHVIANPPYYLA 127


>gi|73749365|ref|YP_308604.1| SAM-dependent methyltransferase [Dehalococcoides sp. CBDB1]
 gi|289433324|ref|YP_003463197.1| methyltransferase type 11 [Dehalococcoides sp. GT]
 gi|73661081|emb|CAI83688.1| SAM-dependent methyltransferase UbiE/COQ5 family [Dehalococcoides
           sp. CBDB1]
 gi|288947044|gb|ADC74741.1| Methyltransferase type 11 [Dehalococcoides sp. GT]
          Length = 221

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +K  +++       +I++  G G  T+++   L   +V  ++         K+     P 
Sbjct: 43  RKFVDAANIQPADNIIDMCCGTGATTRLVAGKLKGGQVTGVDLSPDMMARAKEKVVGMPA 102

Query: 96  RLEIIQDDALKVDFEKF 112
             +    D L      F
Sbjct: 103 VFQQASGDNLPFPEGAF 119


>gi|88802354|ref|ZP_01117881.1| hypothetical protein PI23P_07190 [Polaribacter irgensii 23-P]
 gi|88781212|gb|EAR12390.1| hypothetical protein PI23P_07190 [Polaribacter irgensii 23-P]
          Length = 181

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 4/142 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDI 89
              +++K  +         ++E G+G GN T  +L    +  ++I  E +++FF    + 
Sbjct: 21  SKYLIEKCLKDVEFKRDQIILEFGSGNGNFTAEILKRIPKSTQLISFETNKKFFEHCLEK 80

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN-IGTRLLFNWISADTWPPFWE 148
              H N  +I    A K +            +I++LP + +   L+ + +    +     
Sbjct: 81  FKSHDN-FKIHNCSAEKFNQLSEIKEKKVDYVISSLPLSLLKKELITSIVQKVKYHLKPN 139

Query: 149 SLTLLFQKEVGERITAQKNSPH 170
              + +Q   G+ +  + N   
Sbjct: 140 GCFIQYQYSFGKYLFLRNNFND 161


>gi|86136576|ref|ZP_01055155.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp. MED193]
 gi|85827450|gb|EAQ47646.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp. MED193]
          Length = 217

 Score = 42.1 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L++   L K+ ++        V+++G G G  T +   + A  VI +E+D+      +  
Sbjct: 61  LIEARTLAKMLDALDIQRDELVLDVGCGLGYSTAVTAQM-AEMVIGVEEDEIMSADAQAQ 119

Query: 90  SSQHPNRLEIIQ 101
            S+      I+ 
Sbjct: 120 LSEAGADNAIVH 131


>gi|113477217|ref|YP_723278.1| type 11 methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110168265|gb|ABG52805.1| Methyltransferase type 11 [Trichodesmium erythraeum IMS101]
          Length = 2490

 Score = 42.1 bits (98), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 3/123 (2%)

Query: 33   LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             N + +I E   +     V+EIG G G L + L    AR V  ++  +      +   + 
Sbjct: 985  ENWVPQIMEGIPTKPEWKVLEIGCGVGRLIKYLRAKFAR-VDGVDISENMIQFARQYLAD 1043

Query: 93   HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
                 E+  ++    D ++  + +        +  +I +  +      + +         
Sbjct: 1044 GKQNGEVYVNNG--YDLQQLPDENYDFVFSTIVFQHIRSISIVKNYFREIFRVLKMGGYF 1101

Query: 153  LFQ 155
              Q
Sbjct: 1102 RIQ 1104


>gi|294508979|ref|YP_003565868.1| methyltransferase, UbiE/COQ5 family [Bacillus megaterium QM B1551]
 gi|294352283|gb|ADE72605.1| methyltransferase, UbiE/COQ5 family [Bacillus megaterium QM B1551]
          Length = 269

 Score = 42.1 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           +S    G+TV++IG G G +T+ +  +     +VI I+ +       +    + P  L  
Sbjct: 33  ASILKKGMTVLDIGCGTGAITRGIAEVVGPNGRVIGIDSNPILIEKARQTHGETPG-LTF 91

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF-QKEV 158
              D   + ++  F+    I   A +   +   L    +  D        L   +  K++
Sbjct: 92  ETGDIYNLTYKGQFD----IVTSARVLIWLSDPLKALQMMKDATKIGGRILVADYNHKKI 147

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKA 184
             +     +   +   S    WR+ A
Sbjct: 148 SWKPQPPPSMISF--YSAYLKWRSDA 171


>gi|292654827|ref|YP_003534724.1| alkanonic acid methyltransferase [Haloferax volcanii DS2]
 gi|291371656|gb|ADE03883.1| alkanonic acid methyltransferase [Haloferax volcanii DS2]
          Length = 251

 Score = 42.1 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRL 97
           A++     G TV+E+G G G     L         V+V++       + ++ + + P ++
Sbjct: 62  ADALALDPGETVVEMGCGTGANLPYLAERVGPEGSVVVVDFSPGVLDVARERTREFP-QV 120

Query: 98  EIIQDDALKVDFEKFFNISS 117
            +++ DA +    +  + S 
Sbjct: 121 HLVRGDATRPPVARDLDASP 140


>gi|218884378|ref|YP_002428760.1| protein-L-isoaspartate O-methyltransferase [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765994|gb|ACL11393.1| protein-L-isoaspartate O-methyltransferase [Desulfurococcus
           kamchatkensis 1221n]
          Length = 227

 Score = 42.1 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-------KVIVIEKDQQFFPILKDISSQ- 92
           E      G  V+E+G G G    +L  + AR        V  IE+  +     +    + 
Sbjct: 72  EELDPAPGDRVLEVGTGSGYQAAVLAEIVARSGEGKKGHVYTIERIPELAEYARKRLEEA 131

Query: 93  -HPNRLEIIQDD 103
            + + + +I  D
Sbjct: 132 GYSSDVTVIVGD 143


>gi|148270786|ref|YP_001245246.1| ribosomal L11 methyltransferase [Thermotoga petrophila RKU-1]
 gi|281413091|ref|YP_003347170.1| ribosomal L11 methyltransferase [Thermotoga naphthophila RKU-10]
 gi|166223499|sp|A5IN97|PRMA_THEP1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|147736330|gb|ABQ47670.1| LSU ribosomal protein L11P methyltransferase [Thermotoga petrophila
           RKU-1]
 gi|281374194|gb|ADA67756.1| ribosomal L11 methyltransferase [Thermotoga naphthophila RKU-10]
          Length = 264

 Score = 42.1 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             +G TV+++G G G L      LGA +V+ ++ D+Q   + ++   ++         D 
Sbjct: 127 LKEGNTVLDVGCGTGILAIAAKKLGASQVVAVDVDEQAVEVAEENVRKND-------VDV 179

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           L    +    +     I+ +   NI   +    +         +S+ +L
Sbjct: 180 LVKWSDLLSEVEGTFDIVVS---NILAEIHVKLLEDVNRVTHRDSMLIL 225


>gi|161525648|ref|YP_001580660.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia multivorans ATCC 17616]
 gi|189349626|ref|YP_001945254.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase
           [Burkholderia multivorans ATCC 17616]
 gi|160343077|gb|ABX16163.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia multivorans ATCC 17616]
 gi|189333648|dbj|BAG42718.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase
           [Burkholderia multivorans ATCC 17616]
          Length = 217

 Score = 42.1 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ +         V+ IGAG G LT ++    A  V  +E D        D   +
Sbjct: 63  PRVEARVLQELAVKKHENVLVIGAGSGYLTALIAHR-ALHVTAVEIDPTIAKFAADNLRE 121

Query: 93  HP-NRLEIIQDD 103
           +     E++  D
Sbjct: 122 NAVTNAEVVLGD 133


>gi|21243260|ref|NP_642842.1| hypothetical protein XAC2527 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108794|gb|AAM37378.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 207

 Score = 42.1 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L++  ++     +++++Q+D
Sbjct: 55  LPGARVLDLFAGSGALGLEAVSRGAAHATLIERDPGLVQRLREHVTRLDAATQVQVLQED 114

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           A++   E+     + I  +           +   + A      W
Sbjct: 115 AVR-WLERAPAALADIVFVDPPFAAGLWPAVLERLPAHVAADAW 157


>gi|320449338|ref|YP_004201434.1| methyltransferase [Thermus scotoductus SA-01]
 gi|320149507|gb|ADW20885.1| methyltransferase [Thermus scotoductus SA-01]
          Length = 267

 Score = 42.1 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 33  LNILKKIAESSGS-----LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
             +  +IA + G+      +   ++E+G G G +   L+  G R +  ++KD     + +
Sbjct: 24  PEVAGRIATAIGNALGVRGEEAVLLELGVGTGRIALPLIARGYRYL-ALDKDPGMLEVFR 82

Query: 88  DISSQHPNRLEIIQDDALKVDFEK 111
             ++    ++ +I+ DA  +    
Sbjct: 83  QKAAGVMRKVRLIEADARAIPLPD 106


>gi|302348752|ref|YP_003816390.1| Predicted archaea-specific methyltransferase [Acidilobus
           saccharovorans 345-15]
 gi|302329164|gb|ADL19359.1| Predicted archaea-specific methyltransferase [Acidilobus
           saccharovorans 345-15]
          Length = 292

 Score = 42.1 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--- 96
            +++G   G  V+EIG G G      L  GA KVI +E  ++   I +        R   
Sbjct: 132 VKAAGVRRGDKVLEIGTGLGYTAAEALKAGA-KVISVELREEVLWIAERNPWSFRLRDFK 190

Query: 97  -LEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            + II+ DA +V     +       II + P
Sbjct: 191 DITIIRGDACEVVN---YIEGPFDVIIHDPP 218


>gi|251779137|ref|ZP_04822057.1| ribosomal RNA adenine dimethylase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083452|gb|EES49342.1| ribosomal RNA adenine dimethylase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 186

 Score = 42.1 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQHPN 95
           K+ E+        ++E G G G  T+ +L       I+  IE +++F+ ILK       N
Sbjct: 29  KMIENINFNKCNCIVEFGPGTGVFTEEILKRRNSNTIIMLIEYNEEFYKILKSKYGNIEN 88

Query: 96  RLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            + II D A  +     K+   +    +      ++   +    +         +   + 
Sbjct: 89  -VYIINDSAENIDYYINKYDITNVDYIVSGLPFASLPQEMSDKILEKSKIVLGDDGNFIT 147

Query: 154 FQ 155
           FQ
Sbjct: 148 FQ 149


>gi|18311009|ref|NP_562943.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           str. 13]
 gi|110801769|ref|YP_699308.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           SM101]
 gi|168204734|ref|ZP_02630739.1| ribosomal protein L11 methyltransferase [Clostridium perfringens E
           str. JGS1987]
 gi|168208729|ref|ZP_02634354.1| ribosomal protein L11 methyltransferase [Clostridium perfringens B
           str. ATCC 3626]
 gi|168212936|ref|ZP_02638561.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           CPE str. F4969]
 gi|169343726|ref|ZP_02864725.1| ribosomal protein L11 methyltransferase [Clostridium perfringens C
           str. JGS1495]
 gi|182626897|ref|ZP_02954631.1| ribosomal protein L11 methyltransferase [Clostridium perfringens D
           str. JGS1721]
 gi|38605393|sp|Q8XIT6|PRMA_CLOPE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|123145978|sp|Q0SRE9|PRMA_CLOPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|18145691|dbj|BAB81733.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           str. 13]
 gi|110682270|gb|ABG85640.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           SM101]
 gi|169298286|gb|EDS80376.1| ribosomal protein L11 methyltransferase [Clostridium perfringens C
           str. JGS1495]
 gi|170663557|gb|EDT16240.1| ribosomal protein L11 methyltransferase [Clostridium perfringens E
           str. JGS1987]
 gi|170713216|gb|EDT25398.1| ribosomal protein L11 methyltransferase [Clostridium perfringens B
           str. ATCC 3626]
 gi|170715644|gb|EDT27826.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           CPE str. F4969]
 gi|177907747|gb|EDT70359.1| ribosomal protein L11 methyltransferase [Clostridium perfringens D
           str. JGS1721]
          Length = 313

 Score = 42.1 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 32  DLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           D    +   ++         TV +IG G G L  +   LGA+ V+ ++ D       K+ 
Sbjct: 160 DHETTRMCVQALDKYVKADTTVFDIGTGSGILALVASKLGAKHVVGVDLDPVAVDSAKEN 219

Query: 90  SSQHP-NRLEIIQDDALKV 107
            S +  + +E++  + L V
Sbjct: 220 ISFNNVDNIEVLYGNLLDV 238


>gi|16263836|ref|NP_436628.1| hypothetical protein SM_b20088 [Sinorhizobium meliloti 1021]
 gi|15139960|emb|CAC48488.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 658

 Score = 42.1 bits (98), Expect = 0.089,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 58/212 (27%), Gaps = 25/212 (11%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G TV+EIG G G     +L+  A  V  IE+      + +   ++
Sbjct: 64  PYIVALMIERAEVQPGDTVLEIGTGSGY-AAAVLSRIAAYVYTIERHAGLAEVAERRFAE 122

Query: 93  H-PNRLEIIQDD-------ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--ISADT 142
                +++   D       A   D          I        ++G  L+          
Sbjct: 123 LRYGNIDVRVGDGTAGWPEAGPFDAILVAAGGPEIPHALKEQLDLGGHLVIPVGPPEEQR 182

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                      F+++    +        YG        R +      +          V 
Sbjct: 183 LMKVTRVNATTFEEQDLGGVRFVPLVGEYGWHEERAQSRARPRPAPTLP-------ELVA 235

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRR 234
                      P+P   +    +  + F  RR
Sbjct: 236 EA-------AEPLPDLDDPAFGLLFDRFAGRR 260


>gi|257092768|ref|YP_003166409.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045292|gb|ACV34480.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 221

 Score = 42.1 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    I  ++ +         V+E+G G G +   LL   A  V  +E D      
Sbjct: 62  GQTMLQ-PKIDARVLQEVNVRSTDIVLEVGTGSGYM-AALLAANAEYVHTVEIDPVLAET 119

Query: 86  LK-DISSQHPNRLEIIQDDA 104
            + ++       + +   DA
Sbjct: 120 ARHNLRQAGITNVSVEVGDA 139


>gi|229058177|ref|ZP_04196566.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus AH603]
 gi|228720142|gb|EEL71724.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus AH603]
          Length = 258

 Score = 42.1 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            +  I +    +    VI+IG G G  T+ L  +GA+ VI ++  ++     K+  +  P
Sbjct: 26  TINNIVD----VQNKQVIDIGCGGGIYTKELALMGAKSVIGLDFSKEILQAAKENCNGFP 81

Query: 95  NRLEIIQDDA 104
           N +  I  DA
Sbjct: 82  N-ISFIHGDA 90


>gi|168215654|ref|ZP_02641279.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           NCTC 8239]
 gi|182382073|gb|EDT79552.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           NCTC 8239]
          Length = 313

 Score = 42.1 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 32  DLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           D    +   ++         TV +IG G G L  +   LGA+ VI ++ D       K+ 
Sbjct: 160 DHETTRMCVQALDKYVKADTTVFDIGTGSGILALVASKLGAKHVIGVDLDPVAVDSAKEN 219

Query: 90  SSQHP-NRLEIIQDDALKV 107
            S +  + +E++  + L V
Sbjct: 220 ISFNNVDNIEVLYGNLLDV 238


>gi|329944477|ref|ZP_08292642.1| methyltransferase domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328530242|gb|EGF57121.1| methyltransferase domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 204

 Score = 42.1 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 32  DLNIL--KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           + N+   ++I   +    G + +++G G G L + L T+  R V+ ++ D+Q     +  
Sbjct: 7   NHNVAFHRRIVRDAALRGG-SALDVGCGDGLLLERLATVC-RCVVGLDPDEQAVARARGR 64

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
             Q P   E++ DD +  D  +       +  +A L +      L   
Sbjct: 65  LEQIPQA-EVLLDDVMDPDLPQRIGTFETVSCVATLHHLPLEPALVRL 111


>gi|325120059|emb|CBZ55611.1| hypothetical protein NCLIV_060360 [Neospora caninum Liverpool]
          Length = 725

 Score = 42.1 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGS 45
             PK+ +GQNFL D NI + IA +   
Sbjct: 646 FKPKQSLGQNFLADPNISRLIAATLED 672


>gi|313639465|gb|EFS04319.1| UbiE/COQ5 family methyltransferase [Listeria seeligeri FSL S4-171]
          Length = 198

 Score = 42.1 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
            ++       T++++GAG G LT     L    V  ++ D +   +++  +       +E
Sbjct: 35  IQAMPINKTDTILDLGAGTGFLTIPAAKLVDNTVFALDLDSKMLELIQKKALDADLTNVE 94

Query: 99  IIQD 102
           +++ 
Sbjct: 95  VLEA 98


>gi|307308166|ref|ZP_07587881.1| protein-L-isoaspartate O-methyltransferase [Sinorhizobium meliloti
           BL225C]
 gi|306901369|gb|EFN31974.1| protein-L-isoaspartate O-methyltransferase [Sinorhizobium meliloti
           BL225C]
          Length = 658

 Score = 42.1 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 58/212 (27%), Gaps = 25/212 (11%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G TV+EIG G G     +L+  A  V  IE+      + +   ++
Sbjct: 64  PYIVALMIERAEVQPGDTVLEIGTGSGY-AAAVLSRIAAYVYTIERHAGLAEVAERRFAE 122

Query: 93  H-PNRLEIIQDD-------ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--ISADT 142
                +++   D       A   D          I        ++G  L+          
Sbjct: 123 LRYGNIDVRVGDGTAGWPEAGPFDAILVAAGGPEIPHALKEQLDLGGHLVIPVGPPEEQR 182

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                      F+++    +        YG        R +      +          V 
Sbjct: 183 LMKVTRVNATTFEEQDLGGVRFVPLVGEYGWHEERAQSRARPRPAPTLP-------ELVA 235

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRR 234
                      P+P   +    +  + F  RR
Sbjct: 236 EA-------AEPLPDLDDPAFGLLFDRFAGRR 260


>gi|289433916|ref|YP_003463788.1| methyltransferase, UbiE/COQ5 family [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170160|emb|CBH26700.1| methyltransferase, UbiE/COQ5 family [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 198

 Score = 42.1 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
            ++       T++++GAG G LT     L    V  ++ D +   +++  +       +E
Sbjct: 35  IQAMPINKTDTILDLGAGTGFLTIPAAKLVDNTVFALDLDSKMLELIQKKALDADLTNVE 94

Query: 99  IIQD 102
           +++ 
Sbjct: 95  VLEA 98


>gi|254501376|ref|ZP_05113527.1| Methyltransferase domain family protein [Labrenzia alexandrii
           DFL-11]
 gi|222437447|gb|EEE44126.1| Methyltransferase domain family protein [Labrenzia alexandrii
           DFL-11]
          Length = 219

 Score = 42.1 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 24/118 (20%)

Query: 6   KSHSLKTILSHYK---------IIPKKYMGQNFLLD-------LNILKKIAESSGSLDGI 49
           K  +++  L             +   +   QN L           +  K+          
Sbjct: 7   KREAIRDKLEKADAVRMKVLDEVKFIRSWAQNPLRTGAVAPSGPELASKMVSFLILRPHS 66

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDA 104
            V+E+G G G +T+ L   G      + +D        D       R   L ++Q DA
Sbjct: 67  KVVELGPGTGVVTKALFDAG-----FLNRDLNLIEYSTDFCEHLGGRYPGLPVLQGDA 119


>gi|300824681|ref|ZP_07104787.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|300522771|gb|EFK43840.1| conserved hypothetical protein [Escherichia coli MS 119-7]
          Length = 187

 Score = 42.1 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVMLAEISNRDYILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|229032025|ref|ZP_04188008.1| Dimethyladenosine transferase [Bacillus cereus AH1271]
 gi|228729270|gb|EEL80264.1| Dimethyladenosine transferase [Bacillus cereus AH1271]
          Length = 212

 Score = 42.1 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PQE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|256831108|ref|YP_003159836.1| tRNA methyltransferase complex GCD14 subunit [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580284|gb|ACU91420.1| tRNA methyltransferase complex GCD14 subunit [Desulfomicrobium
           baculatum DSM 4028]
          Length = 279

 Score = 42.1 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ--HP 94
           I    G   G  ++E G G G LT  L  L     KV   E+ ++F+ + +    +    
Sbjct: 86  IVMKLGIGPGCRIVEAGCGSGGLTTALAWLVGDTGKVYTYERREEFYTLCRQNLERIGLS 145

Query: 95  NRLEIIQDDAL-----KVDFEKFFNISSPIRIIANLP 126
           +R+E    D             F ++  P   I ++P
Sbjct: 146 HRVEQFHHDIAEGFNPHAADALFLDVREPCDYIHHIP 182


>gi|194433565|ref|ZP_03065842.1| conserved hypothetical protein [Shigella dysenteriae 1012]
 gi|291289346|ref|YP_003517678.1| hypothetical protein pKF140_152 [Klebsiella pneumoniae]
 gi|309797326|ref|ZP_07691720.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|194418157|gb|EDX34249.1| conserved hypothetical protein [Shigella dysenteriae 1012]
 gi|290792307|gb|ADD63632.1| hypothetical protein pKF140-152 [Klebsiella pneumoniae]
 gi|308119073|gb|EFO56335.1| conserved hypothetical protein [Escherichia coli MS 145-7]
          Length = 187

 Score = 42.1 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVMLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWLPVQYYS-----RVIMNPPFSHGQDI 128


>gi|167525090|ref|XP_001746880.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774660|gb|EDQ88287.1| predicted protein [Monosiga brevicollis MX1]
          Length = 339

 Score = 42.1 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
           + I ++   +    V+++G G G L+      GA+ V  I+         + I       
Sbjct: 46  RSIVQNEHLIKDKIVLDVGCGTGILSMFAAQAGAKHVYAIDC-SNIAKQARQIVKDNKFD 104

Query: 95  NRLEIIQD 102
           +R+ +IQ 
Sbjct: 105 DRITVIQG 112


>gi|150376193|ref|YP_001312789.1| protein-L-isoaspartate O-methyltransferase [Sinorhizobium medicae
           WSM419]
 gi|150030740|gb|ABR62856.1| protein-L-isoaspartate O-methyltransferase [Sinorhizobium medicae
           WSM419]
          Length = 660

 Score = 42.1 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 67/216 (31%), Gaps = 31/216 (14%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G TV+EIG G G    +L  + A  V  +E+       L  I+ Q
Sbjct: 64  PYIVALMIERAEVQPGDTVLEIGTGSGYAAAVLSRIAAH-VYTMER----HAGLARIAGQ 118

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIAN------LPYNIGTRL-LFNWISADTWPP 145
               L     D    D    +  + P   I        +PY +  +L L   +     PP
Sbjct: 119 RFADLRYKNIDVRVGDGTTGWPEAGPFDAILVAAGSPEIPYALKQQLDLGGHLVIPVGPP 178

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW---RTKATMMFDISPHVFFPSP--- 199
             + L  + +               +  L    GW   R +       +     P+P   
Sbjct: 179 DEQRLLKVTRVSATTFKEQDLGGVRFVPLIGEYGWHDERAEPR-----ARQSLRPAPTLS 233

Query: 200 -KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRR 234
             V S          P+P   +       + F  RR
Sbjct: 234 QMVASA-------AEPLPAFDDPAFGRLFDRFAGRR 262


>gi|312220536|emb|CBY00477.1| hypothetical protein [Leptosphaeria maculans]
          Length = 397

 Score = 42.1 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNR 96
           I ++        V+++G G G L+      GA+KV  ++         K+I ++  + +R
Sbjct: 185 IEKNLEVFKDKVVLDVGCGTGILSLFSARAGAKKVFAVDN-SGIVTRAKEIIAKNGYADR 243

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIA 123
           +E+IQ      + ++         II+
Sbjct: 244 IEVIQGRVEDFNTQRLIGKEKVDIIIS 270


>gi|261329762|emb|CBH12744.1| arginine N-methyltransferase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 390

 Score = 42.1 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
                  V+EIGAG G L+ M   LGA+ V+ +E  ++   + ++   ++   ++++++ 
Sbjct: 92  HVTPETGVLEIGAGSGLLSLMAAKLGAKWVVAVEGSEELAKLARENIRANNMEHQVKVLH 151

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNI 129
              +  + +       P  +++ +   +
Sbjct: 152 M--MSTELKPKHLPEPPDVLLSEIFGTM 177


>gi|238026079|ref|YP_002910310.1| methyltransferase [Burkholderia glumae BGR1]
 gi|237875273|gb|ACR27606.1| Methyltransferase [Burkholderia glumae BGR1]
          Length = 377

 Score = 42.1 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L   G  +V+  ++D +      +   +  +  R+
Sbjct: 190 VARAPLPAATLAFDIGTGTGVLAAVLAERGVERVVATDQDPRALACAAENLERLGYGARV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+ + D         F       ++ N P+
Sbjct: 250 ELQRAD--------LFPAGRAPLVVCNPPW 271


>gi|328882501|emb|CCA55740.1| Protein-L-isoaspartate O-methyltransferase [Streptomyces venezuelae
           ATCC 10712]
          Length = 317

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++  +  +    DG  V+EIGAG G    +L    G   V  ++ D++     +   +
Sbjct: 100 PSLMALMLRALDVRDGDDVLEIGAGTGYHAALLCHRLGEEHVTTVDLDEEIAESARTHLA 159

Query: 92  QHPNRLEIIQDD 103
               R  ++  D
Sbjct: 160 AAGYRPAVVAVD 171


>gi|325927067|ref|ZP_08188337.1| 16S rRNA m(2)G-966 methyltransferase family [Xanthomonas perforans
           91-118]
 gi|325542566|gb|EGD14038.1| 16S rRNA m(2)G-966 methyltransferase family [Xanthomonas perforans
           91-118]
          Length = 207

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L++  ++     +++++Q+D
Sbjct: 55  LPGARVLDLFAGSGALGLEAVSRGAAHATLIERDPGLVQRLREHVTRLDAATQVQVLQED 114

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           A++   E+     + I  +           +   + A      W
Sbjct: 115 AVR-WLERAPAALADIVFVDPPFAAGLWPAVLEHLPAHVAADAW 157


>gi|297197436|ref|ZP_06914833.1| methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|297146724|gb|EDY60318.2| methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 273

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            ++ ++A  +G      V+E+G G G LT+ L   G   +  +E 
Sbjct: 36 PALVAELARLTGLRPESRVLEVGPGTGQLTRSLAGFGCH-ITAVEL 80


>gi|291548480|emb|CBL21588.1| Predicted glycosyltransferases [Ruminococcus sp. SR1/5]
          Length = 1386

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                +V+EIGAG G +T  +L   A  V  +E  ++   I     ++    L I+  + 
Sbjct: 63  LKKADSVLEIGAGCGAIT-GMLCRKAGHVTSVELSKRRADI-NYARNRDKENLTIMVGNL 120

Query: 105 LKVDFEKFFN 114
             + F + F+
Sbjct: 121 NDMTFPEKFD 130


>gi|262831324|sp|A7MH06|TRMN6_ENTS8 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
          Length = 245

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 54/177 (30%), Gaps = 23/177 (12%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKDISSQHP--NRLE 98
           +       V++IGAG G LT ML       V    +E D Q     ++     P   R++
Sbjct: 40  APVAKAQRVLDIGAGSGLLTLMLAQRTEDTVTLDAVELDAQAAEQARENIDASPWAARIQ 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN-----IGTRL--LFNWISADTWPPFWESLT 151
           +   D                 I++N PY        T       + +            
Sbjct: 100 VHSADI---QTWTQQQTQRYELIVSNPPYYDKGVACATPAREQARYTTTLDHGTLLACAA 156

Query: 152 LLFQKE-VGERITAQKNSPHYGRLSVLTGWRTK-----ATMMFDISPH---VFFPSP 199
            L  +E     +  + +   + RL+   GW  +     A     +       F PSP
Sbjct: 157 QLITEEGFFCVVLPESSGEAFSRLAGEQGWHLRLRTDVAENAGKLPHRVLLAFSPSP 213


>gi|291300184|ref|YP_003511462.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
 gi|290569404|gb|ADD42369.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
          Length = 270

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 33 LNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +  +     +     G  V+++GAG G LT  LL  GA  V+ +E D      L+   
Sbjct: 33 PDYARDAVRWALEPASGRRVLDLGAGTGKLTATLLAEGAD-VVAVEPDALMLAQLRRTL 90


>gi|229010846|ref|ZP_04168043.1| Methyltransferase, UbiE/COQ5 [Bacillus mycoides DSM 2048]
 gi|228750520|gb|EEM00349.1| Methyltransferase, UbiE/COQ5 [Bacillus mycoides DSM 2048]
          Length = 258

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            +  I +    +    VI+IG G G  T+ L  +GA+ V+ ++  ++     K+  +  P
Sbjct: 26  TINNIVD----VQNKQVIDIGCGGGIYTKELALMGAKSVVGLDFSKEILQAAKENCNAFP 81

Query: 95  NRLEIIQDDA 104
           N +  I  DA
Sbjct: 82  N-ISFIHGDA 90


>gi|229146945|ref|ZP_04275309.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST24]
 gi|228636544|gb|EEK93010.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST24]
          Length = 212

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|229048081|ref|ZP_04193655.1| Dimethyladenosine transferase [Bacillus cereus AH676]
 gi|229111847|ref|ZP_04241393.1| Dimethyladenosine transferase [Bacillus cereus Rock1-15]
 gi|229152578|ref|ZP_04280767.1| Dimethyladenosine transferase [Bacillus cereus m1550]
 gi|228630839|gb|EEK87479.1| Dimethyladenosine transferase [Bacillus cereus m1550]
 gi|228671603|gb|EEL26901.1| Dimethyladenosine transferase [Bacillus cereus Rock1-15]
 gi|228723267|gb|EEL74638.1| Dimethyladenosine transferase [Bacillus cereus AH676]
          Length = 212

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|218899543|ref|YP_002447954.1| hypothetical protein BCG9842_B0742 [Bacillus cereus G9842]
 gi|228941542|ref|ZP_04104092.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228967447|ref|ZP_04128476.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228974472|ref|ZP_04135040.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981066|ref|ZP_04141368.1| Dimethyladenosine transferase [Bacillus thuringiensis Bt407]
 gi|296504865|ref|YP_003666565.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171]
 gi|218541885|gb|ACK94279.1| conserved hypothetical protein [Bacillus cereus G9842]
 gi|228778726|gb|EEM26991.1| Dimethyladenosine transferase [Bacillus thuringiensis Bt407]
 gi|228785308|gb|EEM33319.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792224|gb|EEM39797.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228818192|gb|EEM64267.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|296325917|gb|ADH08845.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171]
 gi|326942157|gb|AEA18053.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 212

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|218232461|ref|YP_002369184.1| hypothetical protein BCB4264_A4494 [Bacillus cereus B4264]
 gi|228960646|ref|ZP_04122291.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229129655|ref|ZP_04258623.1| Dimethyladenosine transferase [Bacillus cereus BDRD-Cer4]
 gi|229892103|sp|Q818A1|Y4369_BACCR RecName: Full=Uncharacterized methyltransferase BC_4369
 gi|218160418|gb|ACK60410.1| conserved hypothetical protein [Bacillus cereus B4264]
 gi|228653772|gb|EEL09642.1| Dimethyladenosine transferase [Bacillus cereus BDRD-Cer4]
 gi|228799010|gb|EEM45982.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 212

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|159041545|ref|YP_001540797.1| hypothetical protein Cmaq_0975 [Caldivirga maquilingensis IC-167]
 gi|157920380|gb|ABW01807.1| conserved hypothetical protein [Caldivirga maquilingensis IC-167]
          Length = 220

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 20/167 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISS-Q 92
           +++++ + SG   G  V ++G G G +  M       + + +E     +   L+ I    
Sbjct: 14  VVRRMLQVSGVRPGEVVYDLGCGDGRIVVMAAKEFGARAVCVEIRNDLYEQTLRRIKELN 73

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             N +++I  +  +V  E          ++         ++L   +  +  P        
Sbjct: 74  LDNVVKVIHGNFFEVPIED-------ADVVTMYLLTSVNQMLRPKLERELRPG------- 119

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
                V                 V   WR+    +F I      P P
Sbjct: 120 ---TRVVSHDFEVPGWKPILAEDVYEEWRSHKIYLFKIPG-AEIPIP 162


>gi|42783503|ref|NP_980750.1| hypothetical protein BCE_4457 [Bacillus cereus ATCC 10987]
 gi|81830964|sp|Q730F9|Y4457_BACC1 RecName: Full=Uncharacterized methyltransferase BCE_4457
 gi|42739432|gb|AAS43358.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 212

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|30264445|ref|NP_846822.1| hypothetical protein BA_4603 [Bacillus anthracis str. Ames]
 gi|47529900|ref|YP_021249.1| hypothetical protein GBAA_4603 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187267|ref|YP_030519.1| hypothetical protein BAS4271 [Bacillus anthracis str. Sterne]
 gi|165872737|ref|ZP_02217365.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167634625|ref|ZP_02392945.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167638621|ref|ZP_02396897.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170687373|ref|ZP_02878590.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170707418|ref|ZP_02897872.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177653216|ref|ZP_02935468.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190567002|ref|ZP_03019918.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|196034420|ref|ZP_03101829.1| conserved hypothetical protein [Bacillus cereus W]
 gi|196039384|ref|ZP_03106690.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196044737|ref|ZP_03111971.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|206976060|ref|ZP_03236970.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217961865|ref|YP_002340435.1| hypothetical protein BCAH187_A4508 [Bacillus cereus AH187]
 gi|218905570|ref|YP_002453404.1| hypothetical protein BCAH820_4455 [Bacillus cereus AH820]
 gi|222097818|ref|YP_002531875.1| dimethyladenosine transferase [Bacillus cereus Q1]
 gi|225866357|ref|YP_002751735.1| hypothetical protein BCA_4487 [Bacillus cereus 03BB102]
 gi|227817154|ref|YP_002817163.1| hypothetical protein BAMEG_4640 [Bacillus anthracis str. CDC 684]
 gi|228917009|ref|ZP_04080569.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929420|ref|ZP_04092441.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935696|ref|ZP_04098509.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948089|ref|ZP_04110373.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093446|ref|ZP_04224549.1| Dimethyladenosine transferase [Bacillus cereus Rock3-42]
 gi|229123916|ref|ZP_04253108.1| Dimethyladenosine transferase [Bacillus cereus 95/8201]
 gi|229141112|ref|ZP_04269654.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST26]
 gi|229186615|ref|ZP_04313776.1| Dimethyladenosine transferase [Bacillus cereus BGSC 6E1]
 gi|229198502|ref|ZP_04325206.1| Dimethyladenosine transferase [Bacillus cereus m1293]
 gi|229602234|ref|YP_002868664.1| hypothetical protein BAA_4623 [Bacillus anthracis str. A0248]
 gi|254684131|ref|ZP_05147991.1| hypothetical protein BantC_09780 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721963|ref|ZP_05183752.1| hypothetical protein BantA1_05780 [Bacillus anthracis str. A1055]
 gi|254736478|ref|ZP_05194184.1| hypothetical protein BantWNA_15056 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741516|ref|ZP_05199203.1| hypothetical protein BantKB_10982 [Bacillus anthracis str. Kruger
           B]
 gi|254750954|ref|ZP_05202993.1| hypothetical protein BantV_00736 [Bacillus anthracis str. Vollum]
 gi|254757717|ref|ZP_05209744.1| hypothetical protein BantA9_05341 [Bacillus anthracis str.
           Australia 94]
 gi|81837595|sp|Q81LL3|Y4603_BACAN RecName: Full=Uncharacterized methyltransferase
           BA_4603/GBAA_4603/BAS4271
 gi|254803918|sp|C1ESS0|Y4487_BACC3 RecName: Full=Uncharacterized methyltransferase BCA_4487
 gi|254803934|sp|C3P965|Y4623_BACAA RecName: Full=Uncharacterized methyltransferase BAA_4623
 gi|254803938|sp|C3L5Y1|Y4640_BACAC RecName: Full=Uncharacterized methyltransferase BAMEG_4640
 gi|30259103|gb|AAP28308.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47505048|gb|AAT33724.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181194|gb|AAT56570.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164711513|gb|EDR17062.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167513469|gb|EDR88839.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167530077|gb|EDR92812.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170127662|gb|EDS96535.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170668568|gb|EDT19314.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172081498|gb|EDT66570.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190561993|gb|EDV15962.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|195992962|gb|EDX56921.1| conserved hypothetical protein [Bacillus cereus W]
 gi|196024225|gb|EDX62898.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|196030011|gb|EDX68612.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|206745812|gb|EDZ57209.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217063202|gb|ACJ77452.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|218536005|gb|ACK88403.1| conserved hypothetical protein [Bacillus cereus AH820]
 gi|221241876|gb|ACM14586.1| dimethyladenosine transferase [Bacillus cereus Q1]
 gi|225790667|gb|ACO30884.1| conserved hypothetical protein [Bacillus cereus 03BB102]
 gi|227006471|gb|ACP16214.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|228585005|gb|EEK43119.1| Dimethyladenosine transferase [Bacillus cereus m1293]
 gi|228596874|gb|EEK54533.1| Dimethyladenosine transferase [Bacillus cereus BGSC 6E1]
 gi|228642390|gb|EEK98679.1| Dimethyladenosine transferase [Bacillus cereus BDRD-ST26]
 gi|228659218|gb|EEL14866.1| Dimethyladenosine transferase [Bacillus cereus 95/8201]
 gi|228689917|gb|EEL43721.1| Dimethyladenosine transferase [Bacillus cereus Rock3-42]
 gi|228811447|gb|EEM57784.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823934|gb|EEM69753.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830208|gb|EEM75824.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842616|gb|EEM87704.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229266642|gb|ACQ48279.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
 gi|324328278|gb|ADY23538.1| hypothetical protein YBT020_21550 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 212

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|30022450|ref|NP_834081.1| dimethyladenosine transferase [Bacillus cereus ATCC 14579]
 gi|29898008|gb|AAP11282.1| Dimethyladenosine transferase [Bacillus cereus ATCC 14579]
          Length = 188

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|75761025|ref|ZP_00741027.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491481|gb|EAO54695.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 212

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|65321743|ref|ZP_00394702.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str.
           A2012]
          Length = 212

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|319951337|ref|ZP_08025167.1| putative RNA methyltransferase [Dietzia cinnamea P4]
 gi|319435000|gb|EFV90290.1| putative RNA methyltransferase [Dietzia cinnamea P4]
          Length = 422

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDA 104
           D   V +IG G G L  +L   GAR V+  + + +     +    +    +R+ +++ D 
Sbjct: 224 DQPVVWDIGTGTGVLAAVLARRGARAVVASDINPRAVQCARGNVRRLGLEDRVTVVRGDL 283

Query: 105 LKVDFEKFFNISSPI-RIIANLPY 127
              D +   N S     ++ N P+
Sbjct: 284 WPGDDDGVVNRSGRADVVVCNPPW 307


>gi|299145710|ref|ZP_07038778.1| SmtA protein [Bacteroides sp. 3_1_23]
 gi|298516201|gb|EFI40082.1| SmtA protein [Bacteroides sp. 3_1_23]
          Length = 236

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 50  TVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDAL 105
            +++IG G G +  ML         ++ +E D+      ++   + P   R+E++Q D  
Sbjct: 40  RILDIGTGTGLVALMLAQRSLPDTNIVALEIDEAAVGQARENVIRSPWKERVEVVQADFR 99

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGT 131
           K      F++     I++N PY I +
Sbjct: 100 KYRSSDKFDV-----IVSNPPYFIDS 120


>gi|228902902|ref|ZP_04067043.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 4222]
 gi|228856686|gb|EEN01205.1| Dimethyladenosine transferase [Bacillus thuringiensis IBL 4222]
          Length = 233

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 56  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 111

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 112 FSITEGDFLSFEVPNSID 129


>gi|218260249|ref|ZP_03475621.1| hypothetical protein PRABACTJOHN_01283 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224662|gb|EEC97312.1| hypothetical protein PRABACTJOHN_01283 [Parabacteroides johnsonii
           DSM 18315]
          Length = 420

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 15/154 (9%)

Query: 35  ILKKIA-ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            ++ I  E   +  G  +++I  G GN +  L   G   V+  +  Q+   + +   ++ 
Sbjct: 222 TVRPIVNELLKATQGDYILDIACGNGNYSGYLAEQGID-VLAFDYSQRMVELARKRQARF 280

Query: 94  PNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPYNIGTRL--LFNWISADTWPPFWESL 150
            +R+E    D  K  D           + ++N+     + +  LF  ++       +   
Sbjct: 281 NDRIEFCVADVTKYEDMMSLKRNKPFTKAVSNMAIMDISDIDNLFRCVNKLLAENGY--F 338

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
               Q      +T +  + H         +  +A
Sbjct: 339 VFSTQHPCFVTLTNKYMTKH--------NYYGEA 364


>gi|114773347|ref|ZP_01450551.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255]
 gi|114546281|gb|EAU49192.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255]
          Length = 337

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G  ++ +L  GA  +  I++D + F   K  +  +  RL++I      +D
Sbjct: 38  GAGGYSRAILDAGADTLYAIDRDPEVFARAKKWAKDYDGRLKLIHGTFSDLD 89


>gi|151301132|ref|NP_001093089.1| methyltransferase [Bombyx mori]
 gi|87248173|gb|ABD36139.1| S-adenosylmethionine-dependent methyltransferase [Bombyx mori]
 gi|95102706|gb|ABF51291.1| methyltransferase [Bombyx mori]
          Length = 214

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           I    G L+   +++ G GPGNL+   + LGA  V  +E D     + ++   +     +
Sbjct: 44  IQTQFGDLEDKLILDAGCGPGNLSIGAVLLGAGFVTSVEIDADALEVFQENIQEMEIENI 103

Query: 98  EIIQDDAL---KVDFEKFFNISSPIRIIANLPY 127
           +I+Q D L      +E  F+      +I N P+
Sbjct: 104 DIVQCDFLSESYFRWENMFDT-----VIMNPPF 131


>gi|20088929|ref|NP_615004.1| hypothetical protein MA0030 [Methanosarcina acetivorans C2A]
 gi|19913774|gb|AAM03484.1| predicted protein [Methanosarcina acetivorans C2A]
          Length = 260

 Score = 42.1 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 35  ILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ 92
           IL+ I E +   +    ++E+G+G G LT ++       K+  I+++ +   + K+   +
Sbjct: 45  ILESIPEGTERTNREIEILELGSGTGFLTSLIRKEKPDAKITCIDRNPEMLAVAKEK-PE 103

Query: 93  HPNRLEIIQDDALKVDFEKFFNISS 117
               +  I+ D L+ + EK+ N+  
Sbjct: 104 LQKNVTFIEGDILE-ECEKWKNLGG 127


>gi|229892104|sp|A0RIY8|Y3960_BACAH RecName: Full=Uncharacterized methyltransferase BALH_3960
          Length = 212

 Score = 42.1 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGHVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPNSID 108


>gi|226310592|ref|YP_002770486.1| hypothetical protein BBR47_10050 [Brevibacillus brevis NBRC
          100599]
 gi|226093540|dbj|BAH41982.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 192

 Score = 42.1 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ 92
          + +++ +S        ++E+G G G  TQ +        + +++E+D QF  +L+     
Sbjct: 28 LCEQMLKSVDWASTDVILELGPGTGAFTQTIYQRLHPGTQYVLVERDSQFRSMLQSRFPD 87

Query: 93 HPNRLE 98
           P R E
Sbjct: 88 LPIREE 93


>gi|188590324|ref|YP_001921843.1| ribosomal RNA adenine dimethylase [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500605|gb|ACD53741.1| ribosomal RNA adenine dimethylase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 186

 Score = 42.1 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQHPN 95
           K+ E+        ++E G G G  T+ +L       I+  IE +++F+ ILK       N
Sbjct: 29  KMIENINFNKCNCIVEFGPGTGVFTEEILKRRNSNTIIMLIEYNEEFYKILKSKYGNIEN 88

Query: 96  RLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            + II D A  +     K+   +    +      ++   +    +         +   + 
Sbjct: 89  -VYIINDSAENIDYYINKYDITNVDYIVSGLPFASLPKEMSDKILEKSKIVLGDDGNFIT 147

Query: 154 FQ 155
           FQ
Sbjct: 148 FQ 149


>gi|297621297|ref|YP_003709434.1| putative phospholipid N-methyltransferase [Waddlia chondrophila WSU
           86-1044]
 gi|297376598|gb|ADI38428.1| putative phospholipid N-methyltransferase [Waddlia chondrophila WSU
           86-1044]
          Length = 223

 Score = 42.1 bits (98), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPN 95
           +   S         +E+GAG G  T+ +        ++ ++E + +F   L++  + +PN
Sbjct: 50  RFVRSDALAP-RRYLEVGAGTGAFTKTIAGKLGDQDQLDIVEINSRFCSRLEEKYADNPN 108

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            + I Q   L  + E  ++    + + +       +  +               +    +
Sbjct: 109 -IRIYQTSVLDWEPESQYD----VIVSSLPFNAFPSDFVKQIFDHYRKISKHGGIVTYCE 163

Query: 156 KE 157
             
Sbjct: 164 YM 165


>gi|297539891|ref|YP_003675660.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylotenera sp. 301]
 gi|297259238|gb|ADI31083.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylotenera sp. 301]
          Length = 227

 Score = 42.1 bits (98), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    I  +I ++        V+ +G G G LT ++  L A+ V  +E      P 
Sbjct: 67  GQTML-SPKIEGRILQALNIKRTDKVLLVGTGSGYLTALIAKL-AKHVDALEI----IPE 120

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           L   +     +  I       +D    +       +I
Sbjct: 121 LSKQAEARIQKQNIHNVTFYVLDAFSGYTTDKTYDVI 157


>gi|157149513|ref|YP_001451571.1| hypothetical protein EcE24377A_E0032 [Escherichia coli E24377A]
 gi|298155817|ref|YP_003717643.1| hypothetical protein ETEC1392/75_p557_00010 [Escherichia coli ETEC
           1392/75]
 gi|157076680|gb|ABV16389.1| hypothetical protein EcE24377A_E0032 [Escherichia coli E24377A]
 gi|297374414|emb|CBL93475.1| conserved hypothetical protein [Escherichia coli ETEC 1392/75]
          Length = 187

 Score = 42.1 bits (98), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVESNSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|146317792|ref|YP_001197503.1| adenine-specific DNA methylase [Streptococcus suis 05ZYH33]
 gi|145688598|gb|ABP89104.1| Adenine-specific DNA methylase [Streptococcus suis 05ZYH33]
          Length = 324

 Score = 42.1 bits (98), Expect = 0.096,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 11/80 (13%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPIL 86
           FL+D  +             +TV+EIG+G GNL Q +L    +++  + IE D     + 
Sbjct: 100 FLVDQLV---------PTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLS 150

Query: 87  KDISSQHPNRLEIIQDDALK 106
             I+      +   Q DA++
Sbjct: 151 ASIADVMQADISFAQGDAVR 170


>gi|118575543|ref|YP_875286.1| L-isoaspartate methyltransferase/tRNA (1-methyladenosine)
           methyltransferase [Cenarchaeum symbiosum A]
 gi|118194064|gb|ABK76982.1| L-isoaspartate methyltransferase/tRNA (1-methyladenosine)
           methyltransferase [Cenarchaeum symbiosum A]
          Length = 274

 Score = 42.1 bits (98), Expect = 0.096,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 8/118 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNRLEII- 100
           G   G T++EIG G G LT  L +      +V   + D  F  I +   ++      +I 
Sbjct: 97  GIQSGQTIVEIGTGSGALTTFLASIVKPRGRVHTFDVDADFMAIAEKNIARAGMTKYVIM 156

Query: 101 -QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            + D  K       +  + +  + +    +    +   +      P       + Q E
Sbjct: 157 NKMDIRKSRTVPVADADAAVIDLGDPWTAL--PQVRRMLKGSA--PMVAVCPTMNQLE 210


>gi|194437868|ref|ZP_03069962.1| conserved hypothetical protein [Escherichia coli 101-1]
 gi|194423089|gb|EDX39082.1| conserved hypothetical protein [Escherichia coli 101-1]
          Length = 187

 Score = 42.1 bits (98), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVESNSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|328792098|ref|XP_001121923.2| PREDICTED: methyltransferase-like protein 5-like [Apis mellifera]
          Length = 314

 Score = 42.1 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 12/133 (9%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             ++G +V ++G G G L+     LGA  VI  E D     I     ++    +E +Q D
Sbjct: 151 NDIEGHSVGDLGCGCGVLSLGAQMLGASHVIGFEIDSDALKIQSKNCNEIDLFVETVQCD 210

Query: 104 ALKV---DFEKFFNISSPIRIIANLPY----NIGTRLLFNWISADTWPPFWESLTLLFQK 156
            L+     FEK+F+      II N P+    N GT + F  ++         SL     +
Sbjct: 211 VLQYLPGRFEKYFDT-----IIMNPPFGTKHNTGTDMKFLKVATKLASNTVYSLHKTSTR 265

Query: 157 EVGERITAQKNSP 169
               +  AQ  + 
Sbjct: 266 NYVLQKAAQYGAK 278


>gi|289665570|ref|ZP_06487151.1| hypothetical protein XcampvN_21487 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289667746|ref|ZP_06488821.1| hypothetical protein XcampmN_04356 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 206

 Score = 42.1 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L++  ++     +++++Q+D
Sbjct: 55  LPGARVLDLFAGSGALGLEAVSRGAAHATLIERDPGLAQRLREHVTRLDAAKQVQVLQED 114

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           A++   E+     + I  +           +   + A      W
Sbjct: 115 AVR-WLERAPAALADIVFVDPPFAAGLWPAVLERLPAHVAADAW 157


>gi|224371908|ref|YP_002606074.1| cation-efflux family protein [Desulfobacterium autotrophicum HRM2]
 gi|223694627|gb|ACN17910.1| cation-efflux family protein [Desulfobacterium autotrophicum HRM2]
          Length = 653

 Score = 42.1 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 29  FL-LDLNILK-------KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           FL  D ++         +I + +       V+EIG G G     +      +V  I   +
Sbjct: 411 FLGKDDSLADAQARKMQRIVDQADIKPDHHVLEIGCGWGGFAVFVAGQTGCRVTGITVSK 470

Query: 81  QFFPIL--KDISSQHPNRLEIIQDD 103
             + +   +  ++   +R+ I+  D
Sbjct: 471 AQYDLACQRVKAAGLTDRVTILLQD 495


>gi|194017348|ref|ZP_03055960.1| YrrT [Bacillus pumilus ATCC 7061]
 gi|194011216|gb|EDW20786.1| YrrT [Bacillus pumilus ATCC 7061]
          Length = 213

 Score = 42.1 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-KDQQFFPILKDISS 91
             ILK+I        G  V+E G+G GNLT  LL    + V  +E  D      L+    
Sbjct: 35  PVILKEIV----LRAGQDVLEFGSGTGNLTAALLAAD-KNVFGVEPSDAMKKAALQKGIP 89

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
                  I   D L      F     P  I+++  ++
Sbjct: 90  DV-----IHDGDFLSFPAPPF----EPDTIVSSYAFH 117


>gi|191169629|ref|ZP_03031339.1| conserved hypothetical protein [Escherichia coli B7A]
 gi|194430814|ref|ZP_03063196.1| conserved hypothetical protein [Escherichia coli B171]
 gi|190900336|gb|EDV60175.1| conserved hypothetical protein [Escherichia coli B7A]
 gi|194411141|gb|EDX27581.1| conserved hypothetical protein [Escherichia coli B171]
          Length = 187

 Score = 42.1 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVESNSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|310659095|ref|YP_003936816.1| ribosomal protein l11 methyltransferase [Clostridium sticklandii
           DSM 519]
 gi|308825873|emb|CBH21911.1| Ribosomal protein L11 methyltransferase [Clostridium sticklandii]
          Length = 312

 Score = 42.1 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQ 101
                 +V++IG G G L+     LGA +V+ ++ D     + K+   Q+     +EI  
Sbjct: 172 HIDSNCSVLDIGCGSGILSIAAAKLGADRVLGVDLDPVAVKVSKENIEQNNLLGFVEIRH 231

Query: 102 DDALKVDFEK 111
            + + V  EK
Sbjct: 232 GNLMDVVTEK 241


>gi|310826381|ref|YP_003958738.1| precorrin-6y c5 [Eubacterium limosum KIST612]
 gi|308738115|gb|ADO35775.1| precorrin-6y c5 [Eubacterium limosum KIST612]
          Length = 192

 Score = 42.1 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 38  KI--AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIE-KDQQFFPILKDISSQH 93
           +I      G  +   V++IGAG G LT +        +V  +E KD       ++I    
Sbjct: 25  RILTISLLGIQEKDVVVDIGAGTGGLTMEAAYAANEGRVYAVEAKDAALELEKQNIEKFG 84

Query: 94  PNRLEIIQDDA 104
              + II   A
Sbjct: 85  AGNVTIIPGKA 95


>gi|268318264|ref|YP_003291983.1| hypothetical protein Rmar_2724 [Rhodothermus marinus DSM 4252]
 gi|262335798|gb|ACY49595.1| hypothetical protein Rmar_2724 [Rhodothermus marinus DSM 4252]
          Length = 267

 Score = 42.1 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G   ++ G G G  ++ L+ LGAR+V  +E +   + +  +  + +P  + + Q+    
Sbjct: 46  AGAVCVDAGCGMGYFSEELVRLGARRVYAVEANPHLYALASERLAAYPEVVCVHQE---- 101

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
              ++F        ++      +      + + A  + P  
Sbjct: 102 --IQQFEPEEPVDVLVHEFFGPLLYDEDLHVLEALRFRPRL 140


>gi|332796503|ref|YP_004458003.1| methylase [Acidianus hospitalis W1]
 gi|332694238|gb|AEE93705.1| methylase [Acidianus hospitalis W1]
          Length = 197

 Score = 42.1 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 13/98 (13%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  +L  I +      G  V+EIG+G G L+ +   +G  KV  I+ +   F  L  + S
Sbjct: 26  DTELLLSIVK---IKKGEKVVEIGSGSGILSIISAKMGG-KVYSIDINP--FASLATLCS 79

Query: 92  QHPNRL--EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              N L  ++I  D L       F++      I N PY
Sbjct: 80  SKLNNLYIDVINCDMLTCLRNITFDVG-----IFNPPY 112


>gi|296165190|ref|ZP_06847737.1| tRNA (adenine-N(1)-)-methyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295899379|gb|EFG78838.1| tRNA (adenine-N(1)-)-methyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 298

 Score = 42.1 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD----I 89
             +I        G  V+E GAG G LT  LL       +V+  E+        +      
Sbjct: 106 AAQIVHEGDMFPGARVLEAGAGSGALTCSLLRAVGPGGRVVSYEQRTDHAEHARRNVSVF 165

Query: 90  SSQHPNRLEIIQDDALKVDFEK 111
               P+  E+I  D    D   
Sbjct: 166 FDGLPDNWELIVGDVADSDRSD 187


>gi|302550885|ref|ZP_07303227.1| methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302468503|gb|EFL31596.1| methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 226

 Score = 42.1 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           ++I         + V+++G G G  TQ L L     +V  +E+D +   + ++  +  P 
Sbjct: 7   EQIVGRFPVGQRLRVLDVGMGQG--TQALRLVRAGHRVTGVEQDPKMVGVAREALAGEPE 64

Query: 95  ---NRLEIIQDD 103
               R+ I++ D
Sbjct: 65  GVRERMRIVEGD 76


>gi|206558766|ref|YP_002229526.1| putative methyltransferase [Burkholderia cenocepacia J2315]
 gi|198034803|emb|CAR50671.1| putative methyltransferase [Burkholderia cenocepacia J2315]
          Length = 377

 Score = 42.1 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L + G   ++  ++D +     ++  ++  H  ++
Sbjct: 190 VARAPLPATSLAFDIGTGTGVLAAVLASRGVEHIVATDQDLRALACARENVARLGHAGQV 249

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EI++ +         F       ++ N P+
Sbjct: 250 EIVEAN--------LFPPGRAPLVVCNPPW 271


>gi|146303359|ref|YP_001190675.1| Fmu (Sun) domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145701609|gb|ABP94751.1| Fmu (Sun) domain protein [Metallosphaera sedula DSM 5348]
          Length = 354

 Score = 42.1 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQHP-NR 96
                     T++EIG  PG  T ++  L   K  VI  D   +     + + ++   + 
Sbjct: 161 VNVLDPKPEETILEIGGAPGTKTSLIQQLTHNKSYVISVDISARRVEAQRRLLAKWGVSN 220

Query: 97  LEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           +E++  DA  LKV       + +P      +  +    L
Sbjct: 221 VELVIADATELKVTHADKVLVDAPCSNSGTMNVDPSIPL 259


>gi|83310319|ref|YP_420583.1| SAM-dependent methyltransferase [Magnetospirillum magneticum AMB-1]
 gi|82945160|dbj|BAE50024.1| SAM-dependent methyltransferase [Magnetospirillum magneticum AMB-1]
          Length = 218

 Score = 42.1 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           +  ++G      +I++G G   L   LL  G   V V++  +       +      + + 
Sbjct: 40  MIAAAGLRRDAAIIDVGGGASVLVDRLLERGYVHVAVLDIAEAALGQAAERLGPLGDDVT 99

Query: 99  IIQDDALKV-DFEKFFNISSPIRIIA 123
            I+ D L        F++     ++ 
Sbjct: 100 WIEADVLAWRPVPGLFDLWHDRAVLH 125


>gi|241913479|pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
           Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
           Structural Genomics Consortium Target Id Bur219
          Length = 220

 Score = 42.1 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPTSID 108


>gi|284992226|ref|YP_003410780.1| hypothetical protein Gobs_3836 [Geodermatophilus obscurus DSM
           43160]
 gi|284065471|gb|ADB76409.1| hypothetical protein Gobs_3836 [Geodermatophilus obscurus DSM
           43160]
          Length = 120

 Score = 42.1 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           TLR  L    G   L  AG+    RA +L+ E +  +     +
Sbjct: 45  TLRAVLPGPVGPRWLRSAGLPPTTRAADLTAEQWLSLYRCCAE 87


>gi|217327465|ref|ZP_03443548.1| modification methylase BsuBI [Escherichia coli O157:H7 str.
           TW14588]
 gi|217319832|gb|EEC28257.1| modification methylase BsuBI [Escherichia coli O157:H7 str.
           TW14588]
          Length = 489

 Score = 42.1 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 21  PKKY---MGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTL------- 68
            +K+    GQ F+    + + +A            +++ GAG G L+   L         
Sbjct: 20  ARKHKAEFGQ-FMTPSGVARFMASLFPPSTMKTCRLLDAGAGVGALSCAFLDRWLVGEFG 78

Query: 69  -GARKVIVIEKDQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANL 125
             + +    E D++    L    + +  R+   II+ D +++   +          I N 
Sbjct: 79  FESVEATAYEIDKKLCGHLAKHLTGY-RRVTPRIIEGDYIELATAEGLQDRGYTHAILNP 137

Query: 126 PY 127
           PY
Sbjct: 138 PY 139


>gi|157821261|ref|NP_001100323.1| hemK methyltransferase family member 1 [Rattus norvegicus]
 gi|149018619|gb|EDL77260.1| HemK methyltransferase family member 1 (predicted) [Rattus
           norvegicus]
 gi|171847399|gb|AAI61944.1| HemK methyltransferase family member 1 [Rattus norvegicus]
          Length = 340

 Score = 42.1 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLE 98
           +  + DG  ++E+G G G +   LL+   + +VI ++K++    +  + +   Q  +R+ 
Sbjct: 155 AVRAQDGPLILEVGCGSGAIALSLLSQLPKTQVIAVDKEEAAVSLTLENAQRLQLQDRIR 214

Query: 99  IIQDDAL-KVDFEKFFNISSPIRIIANLPY 127
           II  D   +              +++N PY
Sbjct: 215 IIHLDITSEGCCTHLLPWGPMDLVVSNPPY 244


>gi|49481465|ref|YP_038426.1| hypothetical protein BT9727_4108 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141132|ref|YP_085698.1| hypothetical protein BCZK4119 [Bacillus cereus E33L]
 gi|300119196|ref|ZP_07056893.1| hypothetical protein BCSJ1_23194 [Bacillus cereus SJ1]
 gi|81824184|sp|Q634G9|Y4119_BACCZ RecName: Full=Uncharacterized methyltransferase BCE33L4119
 gi|81828199|sp|Q6HDF0|Y4108_BACHK RecName: Full=Uncharacterized methyltransferase BT9727_4108
 gi|49333021|gb|AAT63667.1| conserved hypothetical protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974601|gb|AAU16151.1| conserved hypothetical protein [Bacillus cereus E33L]
 gi|298723416|gb|EFI64161.1| hypothetical protein BCSJ1_23194 [Bacillus cereus SJ1]
          Length = 212

 Score = 42.1 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 91  FSITEGDFLSFEVPTSID 108


>gi|260887903|ref|ZP_05899166.1| precorrin-6y c5,15-methyltransferase [Selenomonas sputigena ATCC
           35185]
 gi|330838764|ref|YP_004413344.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Selenomonas sputigena ATCC 35185]
 gi|260862409|gb|EEX76909.1| precorrin-6y c5,15-methyltransferase [Selenomonas sputigena ATCC
           35185]
 gi|329746528|gb|AEB99884.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Selenomonas sputigena ATCC 35185]
          Length = 195

 Score = 42.1 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 28/183 (15%)

Query: 28  NFL--LDLNILK----------KIAESSG--SLDGITVIEIGAGPGNLT-QMLLTLGARK 72
           +FL   D   ++          +I   +G        V +IGAG G+L+ +  L   A  
Sbjct: 3   HFLGIEDEEFIRGKVPMTKKEIRILTLAGAKIGKNDIVCDIGAGTGSLSIEAALLAKAGH 62

Query: 73  VIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           V  +E+ ++   +++  +++     + II+ +A             P R+ A +    G+
Sbjct: 63  VYAVERKKEAVELIRQNAAKFGIENITIIESEA------PAGLEQLPERLDAAIIGGTGS 116

Query: 132 RL--LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
            L  +  ++     P  +  +  +  + +   +   +    Y   +V          +  
Sbjct: 117 HLEEILEFLDKRLKPGGFIVINCITVQTLASSLAYMRKKSGYLYDTVQVQ----VNRLKK 172

Query: 190 ISP 192
           + P
Sbjct: 173 VGP 175


>gi|187935687|ref|YP_001886870.1| ribosomal RNA adenine dimethylase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723840|gb|ACD25061.1| ribosomal RNA adenine dimethylase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 186

 Score = 42.1 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKDISSQHPN 95
           K+ E+        ++E G G G  T+ +L       I+  IE +++F+ ILK       N
Sbjct: 29  KMIENINFNKCNCIVEFGPGTGVFTEEILKRRNSNTIIMLIEYNEEFYKILKSKYGNIEN 88

Query: 96  RLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            + II D A  +     K+   +    +      ++   +    +         +   + 
Sbjct: 89  -VYIINDSAENIDYYINKYDITNVDYIVSGLPFASLPKEMSDKILEKSKIVLGDDGNFIT 147

Query: 154 FQ 155
           FQ
Sbjct: 148 FQ 149


>gi|21228561|ref|NP_634483.1| methyltransferase [Methanosarcina mazei Go1]
 gi|20907052|gb|AAM32155.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 287

 Score = 42.1 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +G  V++IG GPG L+  L  LGA +V  ++        LKD   +    +++I+
Sbjct: 71  EGSRVLDIGCGPGTLSLPLSKLGA-EVTALDISSGMLKRLKDTVKEESLPVDVIE 124


>gi|295695862|ref|YP_003589100.1| ribosomal protein L11 methyltransferase [Bacillus tusciae DSM 2912]
 gi|295411464|gb|ADG05956.1| ribosomal protein L11 methyltransferase [Bacillus tusciae DSM 2912]
          Length = 348

 Score = 42.1 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
               G  V+++G G G L+     LGA +V+ ++ D       +     +   +R+E+ +
Sbjct: 207 EVTPGCRVLDVGCGSGILSVSAAALGAGRVLAVDLDSLAVDAARHNVEVAGVADRVEVRR 266

Query: 102 DDALK 106
            D L 
Sbjct: 267 GDLLD 271


>gi|218510021|ref|ZP_03507899.1| hypothetical protein RetlB5_22505 [Rhizobium etli Brasil 5]
          Length = 248

 Score = 42.1 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K+  GQ F    ++ K I   +  L+G+  +E   G GN+   +   GA KV   E D +
Sbjct: 77  KQDFGQ-FDTPASLAKDIVGIAEILNGMAALEPSFGLGNIAIEMERAGA-KVHGFEIDTK 134

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
            +       +    +    Q D LK  F   F+     R++ N P+  G   + + + A 
Sbjct: 135 RYASGAQRCAFLGGKQ---QADFLKSPFFPDFD-----RVVMNPPFA-GQADIRHVLHAH 185

Query: 142 TWPPFWESLTLLF 154
            +      L  + 
Sbjct: 186 KFLKSGGLLVSIM 198


>gi|327398623|ref|YP_004339492.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Hippea
           maritima DSM 10411]
 gi|327181252|gb|AEA33433.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Hippea
           maritima DSM 10411]
          Length = 200

 Score = 42.1 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91
              +  + E     +   ++++G G    T +L  +  + KV+ +E D++     K    
Sbjct: 61  PYTVAFMLELLQPKEDSHILDVGCGSCYTTALLAKIAKKGKVVGVEIDKKLVEFCKSNLR 120

Query: 92  QHP-NRLEIIQDDALKVDFEKF 112
           ++  N +EI   D L     KF
Sbjct: 121 KYDFNNIEIYNADKLPPTKSKF 142


>gi|159039977|ref|YP_001539230.1| ubiquinone/menaquinone biosynthesis methyltransferase [Salinispora
           arenicola CNS-205]
 gi|157918812|gb|ABW00240.1| ubiquinone/menaquinone biosynthesis methyltransferase [Salinispora
           arenicola CNS-205]
          Length = 235

 Score = 42.1 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ    D +  +    +     G  V+++GAG G  T  L   GA     +  D    
Sbjct: 37  SFGQ----DRSWRRATRAALDLRPGERVLDVGAGTGVSTGELARSGA---YAVGADLSL- 88

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEK 111
            +L       P  + ++  DAL++ F  
Sbjct: 89  GMLSAGRRTRPG-VPLLAGDALRLPFAD 115


>gi|313634572|gb|EFS01057.1| UbiE/COQ5 family methyltransferase [Listeria seeligeri FSL N1-067]
          Length = 203

 Score = 42.1 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
            ++       T++++GAG G LT     L    V  ++ D +   +++  +       +E
Sbjct: 35  IQAMPINKTDTILDLGAGTGFLTIPAAKLVDNTVFALDLDSKMLELIQKKALDADLTNVE 94

Query: 99  IIQD 102
           +++ 
Sbjct: 95  VLEA 98


>gi|302536859|ref|ZP_07289201.1| O-methyltransferase [Streptomyces sp. C]
 gi|302445754|gb|EFL17570.1| O-methyltransferase [Streptomyces sp. C]
          Length = 388

 Score = 42.1 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDI 89
            D  ++ ++ E     DG  V+EIG G G  + ++    G   V  IE D +      + 
Sbjct: 101 TDPGLVLEMIEELEVEDGHQVLEIGTGTGYSSALMCHRLGQDNVTTIEVDPEVAARADEA 160

Query: 90  SSQ 92
              
Sbjct: 161 LEA 163


>gi|59711052|ref|YP_203828.1| S-adenosyl-L-methionine-dependent methyltransferase [Vibrio
           fischeri ES114]
 gi|75354570|sp|Q5E7Q6|TRMN6_VIBF1 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|59479153|gb|AAW84940.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Vibrio fischeri ES114]
          Length = 234

 Score = 42.1 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 14/91 (15%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-----DQQFFPILKDISSQHPNR 96
           +       +++IGAG G L+ M     +   +  IE      D      L    S    R
Sbjct: 32  ADIRACSQILDIGAGTGLLSLMSAQRNSDAHIDAIELMPIAAD---VARLNFYQSPWKER 88

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           L +I  D L       ++      II N PY
Sbjct: 89  LTLIHHDFLTYQAPHKYD-----AIICNPPY 114


>gi|331270010|ref|YP_004396502.1| 50S ribosomal protein L11 methyltransferase [Clostridium botulinum
           BKT015925]
 gi|329126560|gb|AEB76505.1| ribosomal protein L11 methyltransferase [Clostridium botulinum
           BKT015925]
          Length = 312

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 35  ILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS- 91
             +   ++      +   V +IG G G L+     L A+ V+ ++ D       K+    
Sbjct: 163 TTRLCVKALEEYVKEDSVVFDIGTGSGILSIAAAKLNAKHVVGVDLDPVAVDAAKENVQL 222

Query: 92  QHPNRLEIIQDDALKV 107
            + N +EI+  + ++V
Sbjct: 223 NNLNNIEILYGNLMEV 238


>gi|317129018|ref|YP_004095300.1| methyltransferase type 11 [Bacillus cellulosilyticus DSM 2522]
 gi|315473966|gb|ADU30569.1| Methyltransferase type 11 [Bacillus cellulosilyticus DSM 2522]
          Length = 242

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 2/113 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           S   D  T+++I AG GNL   L   G   V  I+ D +    +    ++    L     
Sbjct: 27  SHLKDNTTILDIAAGSGNLAIELAQQG-HHVTAIDLDPRMIDTINHKKNELGISLSTHVM 85

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           D  K+D          +  + N   ++ +           +    ES +L+ Q
Sbjct: 86  DMRKIDSLN-TQPYDTVVCVGNSLVHLNSIAEIKNCLKKAYLSLQESGSLIIQ 137


>gi|118479537|ref|YP_896688.1| SAM-dependent methyltransferase [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418762|gb|ABK87181.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
          Length = 233

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 56  EDILEDVVNKSFGHVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 111

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 112 FSITEGDFLSFEVPNSID 129


>gi|16331134|ref|NP_441862.1| hypothetical protein slr0407 [Synechocystis sp. PCC 6803]
 gi|1653628|dbj|BAA18540.1| slr0407 [Synechocystis sp. PCC 6803]
          Length = 270

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 41  ESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           E      G +V+E+G G G   L          KV  +++ Q      ++ +     + E
Sbjct: 42  EKMQLKPGDSVLEVGCGTGNDALLLANYVGETGKVTAVDRSQFMLDQARERAKNSTTKFE 101

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            +  DA   +   F   +     +     +I   
Sbjct: 102 FVLADA---EQLPFPGANFTAARVDRTLQHIAQP 132


>gi|86142997|ref|ZP_01061419.1| hypothetical protein MED217_10142 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830442|gb|EAQ48901.1| hypothetical protein MED217_10142 [Leeuwenhoekiella blandensis
           MED217]
          Length = 218

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 48/136 (35%), Gaps = 12/136 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRL 97
           E      G  ++EIG G G  T +L  +GA KV  IE+ Q+ F   K+  S+    P RL
Sbjct: 79  ELLEIKKGDKILEIGTGSGYQTAVLCEVGA-KVYSIERQQELFRKTKNFLSKLGYRPKRL 137

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESLTLLFQK 156
                          F     I + A  PY I   LL    I      P  + +  +   
Sbjct: 138 TFGDG----YLGMPEFAPFDGIIVTAGAPY-IPKPLLAQLKIGGKLVIPVGDEVQTMI-- 190

Query: 157 EVGERITAQKNSPHYG 172
            +  +         YG
Sbjct: 191 RIVRKTQTDFEKKEYG 206


>gi|297570957|ref|YP_003696731.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931304|gb|ADH92112.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 281

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
           +   V+++  G G +   + T   R +V  +E+D+  + +    + ++ NR+ I+  DA 
Sbjct: 110 ENPVVVDLCTGSGAIAIAIATEKPRTRVWAVERDETAYALATANNERYGNRVTIVHGDA- 168

Query: 106 KVDFEKFFNISSPIRIIANLPY 127
               E     S+   +I N PY
Sbjct: 169 --RTELAHLESAVDLLITNPPY 188


>gi|302544941|ref|ZP_07297283.1| putative methyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302462559|gb|EFL25652.1| putative methyltransferase [Streptomyces himastatinicus ATCC 53653]
          Length = 391

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQ 80
           E+    DG TV+EIG G G  T +L    G   V  +E D 
Sbjct: 112 EALDVEDGHTVLEIGTGTGYSTALLCHRLGEDNVTTVEVDP 152


>gi|326673745|ref|XP_003199977.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Danio
           rerio]
          Length = 408

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQ 92
           NI +K+  +S    G TV+++ AG G  T   L+   A  V   E +      L+     
Sbjct: 204 NITEKLRIASFDCSGETVVDLYAGIGYFTLPYLVHANAAHVHACEWNPDAVAALQKSLEI 263

Query: 93  H--PNRLEIIQDDALKVDFEKFFN 114
           +   NR  + Q D  ++      +
Sbjct: 264 NGVSNRCTVHQGDNRQLSLSDLAD 287


>gi|332974702|gb|EGK11618.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [Desmospora sp. 8437]
          Length = 215

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + KK  +S     G +V+E+  GPG L+  L  LG   V  ++  + F  I +  + +
Sbjct: 21  RRVAKKAVQS--LYTGASVLEVAPGPGYLSLELAKLGNCTVTGLDISETFVEIARKHAKE 78

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
               ++    DA  +    F + +  + I  +   N    +
Sbjct: 79  AGVEIDFRLGDAAAM---PFPDETFDLIICRSAFKNFSQPI 116


>gi|326798902|ref|YP_004316721.1| protein-L-isoaspartate O-methyltransferase [Sphingobacterium sp.
           21]
 gi|326549666|gb|ADZ78051.1| Protein-L-isoaspartate O-methyltransferase [Sphingobacterium sp.
           21]
          Length = 229

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  ++ + Q F     I+  + +         V+EIG G G    +L  + A +V  IE 
Sbjct: 72  IGFRQTISQPF-----IVASMTQMLDLSKDDRVLEIGTGSGYQAAVLAEIVA-QVYTIEI 125

Query: 79  DQQFFPILKDISSQ-HPNRLEIIQDD 103
            ++     K +  Q + N +E+   D
Sbjct: 126 VKELAERTKKLLHQLNYNNIEVFIGD 151


>gi|229163323|ref|ZP_04291275.1| Dimethyladenosine transferase [Bacillus cereus R309803]
 gi|228620104|gb|EEK76978.1| Dimethyladenosine transferase [Bacillus cereus R309803]
          Length = 233

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 56  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 111

Query: 97  LEIIQDDALKVDFEKFFN 114
             I + D L  +     +
Sbjct: 112 FSITEGDFLSFEVPNSID 129


>gi|218458945|ref|ZP_03499036.1| probable L-isoaspartyl protein carboxyl methyltransferase protein
           [Rhizobium etli Kim 5]
          Length = 248

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G  V+E+G G G     L++  AR V  +E+ ++     ++   +
Sbjct: 54  PFIVALMIEKADLDAGDKVLEVGTGSGY-ASALISRIARHVYSVERHERLALQARERFEK 112

Query: 93  HPNR-LEIIQDD 103
              R +++   D
Sbjct: 113 LGYRNIDVRVGD 124


>gi|241205193|ref|YP_002976289.1| methyltransferase type 11 [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859083|gb|ACS56750.1| Methyltransferase type 11 [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 269

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
            + +G  DG  V+++G G G+L   L    G  +++ I+    F    +        R+ 
Sbjct: 29  VDFAGLADGDRVLDVGCGTGSLAFTLAETPGLEEIVAIDYSPVFVEAARRR--NTDPRIS 86

Query: 99  IIQDDALKVDFEK-FFNISSPIRIIANLP 126
           I Q DA  + FE   F+ +  + ++  +P
Sbjct: 87  IQQADACALPFEDGRFDRAMSLLVLHFVP 115


>gi|170113344|ref|XP_001887872.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164637233|gb|EDR01520.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 621

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 29  FLLDLNILKKIAESSGS---LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           FL+D NI  KI  S+            EIG G G L    L    R ++    D+
Sbjct: 533 FLVDPNI--KIISSANVPCQRKDWWREEIGPGFGAL----LPREVRDIVFEGVDE 581


>gi|75675972|ref|YP_318393.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrobacter winogradskyi Nb-255]
 gi|74420842|gb|ABA05041.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrobacter winogradskyi Nb-255]
          Length = 220

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +LL   ++ K+ +++       V+ +G   G  T  L+     +V  IE D        D
Sbjct: 63  YLLKPMVVAKMVQAAEIKSTDNVLVVGCATGY-TAALVGKLTDRVTAIESDPALATKASD 121

Query: 89  ISSQHP-NRLEIIQD 102
             +      + +I  
Sbjct: 122 NLASLGLGHVTVIPA 136


>gi|268591358|ref|ZP_06125579.1| protein-L-isoaspartate O-methyltransferase [Providencia rettgeri
           DSM 1131]
 gi|291313335|gb|EFE53788.1| protein-L-isoaspartate O-methyltransferase [Providencia rettgeri
           DSM 1131]
          Length = 208

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+           V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYIVAKMTALLALAPNDHVLEIGTGSGYQTAVLAHL-VKHVFSVER----VKSLQWAAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I   LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWEGWQSKGPFDAIIVTAAPTEIPALLLGQL 162


>gi|254428081|ref|ZP_05041788.1| hypothetical protein ADG881_1311 [Alcanivorax sp. DG881]
 gi|196194250|gb|EDX89209.1| hypothetical protein ADG881_1311 [Alcanivorax sp. DG881]
          Length = 211

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +L+  ++ K+            +++IG G G L+         +V  ++ D   +P L  
Sbjct: 51  YLIMDHLTKR-----KLSADEHLMDIGCGWGPLSIFTAKRFGCRVTAVDADPDVYPYLDL 105

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            +S +   +  +Q    K+   +  ++   +       ++  T +L+N I          
Sbjct: 106 HASINKVDVTPLQARFEKLTQARLADV-DIVAGADICFWDELTPVLYNLIRR-------- 156

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLS 175
                 +  V + I A      +  L+
Sbjct: 157 ----SLRAGVKQIIIADPGRSPFYALA 179


>gi|126728563|ref|ZP_01744378.1| hypothetical protein SSE37_07048 [Sagittula stellata E-37]
 gi|126710493|gb|EBA09544.1| hypothetical protein SSE37_07048 [Sagittula stellata E-37]
          Length = 200

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 56/181 (30%), Gaps = 31/181 (17%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDFEKF 112
           G G  T M   +  + V  +E DQ +  +++   + +P    + +E++  D         
Sbjct: 36  GSGGSTVMAAEMPGKTVFSVESDQDWAHMMRGWFADNPPAQGSTVEVVWSDIGATKEWGH 95

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSP--- 169
               +  R  A  P  +       W  +D   P    +   F++            P   
Sbjct: 96  PVDHTEWRRFARYPLEV-------WSRSDFRQPQVVLVDGRFRQGCALACAFMSGDPLDL 148

Query: 170 ---HYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
               Y    V      K   +           PK+   + HF  H+ P P   E L  I 
Sbjct: 149 YFDDY----VQRQHYHKVEEILG--------PPKIIGRMAHF--HVPPRPIPPERLMWII 194

Query: 227 Q 227
           +
Sbjct: 195 K 195


>gi|242242868|ref|ZP_04797313.1| methyltransferase [Staphylococcus epidermidis W23144]
 gi|242233681|gb|EES35993.1| methyltransferase [Staphylococcus epidermidis W23144]
 gi|319400927|gb|EFV89146.1| methyltransferase domain protein [Staphylococcus epidermidis
           FRI909]
          Length = 239

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +     D   +++IG G GNLTQ+L +LG  +V  ++       I    +SQ  N+++
Sbjct: 26  IVQHFLPSDSHDLLDIGCGTGNLTQLLTSLG--EVTGMDISVDMLSI----ASQKTNQVK 79

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
            I+ +    +  K FN+   I I  +    + T           +    ++   +F    
Sbjct: 80  WIEGNMTHFNLNKKFNM---ITIFCDSLNYLETLNDVKMTFERVYQHLNKNGVFIFDVHT 136

Query: 159 GERITAQKNSPHY 171
             ++    N+  Y
Sbjct: 137 VHKMKTLFNNKSY 149


>gi|270308842|ref|YP_003330900.1| methyltransferase, UbiE/COQ5 family [Dehalococcoides sp. VS]
 gi|270154734|gb|ACZ62572.1| methyltransferase, UbiE/COQ5 family [Dehalococcoides sp. VS]
          Length = 221

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +K  + +    G  +I++  G G  T+++   L   +V  ++         K+  +  P 
Sbjct: 43  RKFVDEANIQPGDNIIDMCCGTGATTRLVAGKLKDGQVTGVDLSPDMMARAKEKVTGMPA 102

Query: 96  RLEIIQDDALKV 107
                  D L  
Sbjct: 103 VFRQASGDNLPF 114


>gi|292493478|ref|YP_003528917.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosococcus halophilus Nc4]
 gi|291582073|gb|ADE16530.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosococcus halophilus Nc4]
          Length = 212

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           ++ ++    +  +V+EIG G G LT ++  L A  V  ++     FP L+ ++      +
Sbjct: 68  RLLQALELKEQDSVLEIGTGTGYLTAVMAGL-AGHVTSVDI----FPELQRLAEWQLKNI 122

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +   DA +   +        I +  +LP
Sbjct: 123 SLQVGDASRGWAQG--GPFDAIAVTGSLP 149


>gi|268326388|emb|CBH39976.1| putative methyltransferase [uncultured archaeon]
          Length = 201

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLE 98
           +          +EIG G G L  M L    +    I+       I ++ + +     R+E
Sbjct: 37  DKLQLKPDDVFLEIGCGGGVLLNMALET-VKHAKAIDHSSDMVQIAREKNQEAVSEGRVE 95

Query: 99  IIQDDA--LKVDFEKF 112
           I+Q +A  L  D   F
Sbjct: 96  IVQGNAESLPWDDNSF 111


>gi|229117872|ref|ZP_04247234.1| Dimethyladenosine transferase [Bacillus cereus Rock1-3]
 gi|228665529|gb|EEL21009.1| Dimethyladenosine transferase [Bacillus cereus Rock1-3]
          Length = 212

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFE 110
             I + D L  +  
Sbjct: 91  FSITEGDFLSFEVP 104


>gi|209964970|ref|YP_002297885.1| methyltransferase small domain protein [Rhodospirillum centenum SW]
 gi|209958436|gb|ACI99072.1| methyltransferase small domain protein [Rhodospirillum centenum SW]
          Length = 254

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD- 88
           +D  +L   A +  +  G  V+E+GAG G  T  L       ++  +E+       L+  
Sbjct: 36  IDPVLL---AAAVPARAGEAVLELGAGAGAATLCLAARAPGCRLTALERQPAAAAALRQG 92

Query: 89  -ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +   +R+ +++ D L+              ++    Y
Sbjct: 93  VALNGWQDRISVLEGD-LRAPPPGLPLNGFDRVLMNPPFY 131


>gi|28868289|ref|NP_790908.1| group 2 family glycosyl transferase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851526|gb|AAO54603.1| glycosyl transferase, group 2 family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 1561

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD- 102
             L+G +V+EIGAG G +++ L   GA  V+ +E   +   I    +    N + ++ + 
Sbjct: 81  HLLEGKSVLEIGAGCGAISRYLGEAGAN-VLSLEGSPRRAAIAASRTRDLDN-VTVLAER 138

Query: 103 -DALKVDFE 110
            D LKVD +
Sbjct: 139 FDDLKVDQQ 147


>gi|78049146|ref|YP_365321.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78037576|emb|CAJ25321.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 218

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           ++ ++     G  V+EIG G G  T  L  L AR+V+ +E D 
Sbjct: 70  RMLQALDLQPGEDVLEIGTGSGFATACLAAL-AREVLSLEIDP 111


>gi|229105009|ref|ZP_04235663.1| Dimethyladenosine transferase [Bacillus cereus Rock3-28]
 gi|228678386|gb|EEL32609.1| Dimethyladenosine transferase [Bacillus cereus Rock3-28]
          Length = 233

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 56  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 111

Query: 97  LEIIQDDALKVDFE 110
             I + D L  +  
Sbjct: 112 FSITEGDFLSFEVP 125


>gi|258511961|ref|YP_003185395.1| 50S ribosomal protein L11 methyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478687|gb|ACV59006.1| ribosomal protein L11 methyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 316

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 9/127 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G+ V+++G G G L      +GA +V+ I+ D        D   ++   +R+++ Q 
Sbjct: 175 VRPGMRVVDVGTGTGVLAIAAALVGAERVVAIDLDPVAVSAATDNVRTNGLEDRVDVRQG 234

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF--QKEVGE 160
           D L           +    +AN+  ++   L+   +     P  W   +     Q+E  E
Sbjct: 235 DLL----AALRPDETFDLAVANILRDVVIALVPQ-VRPRLVPGGWLLTSGYIESQREQVE 289

Query: 161 RITAQKN 167
           +  A   
Sbjct: 290 QALADHG 296


>gi|218708541|ref|YP_002416162.1| hypothetical protein VS_0507 [Vibrio splendidus LGP32]
 gi|262828815|sp|B7VJ58|TRMN6_VIBSL RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|218321560|emb|CAV17512.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 242

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHP--NRLEI 99
                   V++IG G G L  M        +I  I+ DQ           Q P  +R+ +
Sbjct: 38  INLAPESLVLDIGTGTGLLALMAAQRFEDALISAIDIDQHAIDAATVNIEQSPWQDRISL 97

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
             D  L  DF + F+      II N PY   
Sbjct: 98  HHDSVLTTDFSQRFD-----AIICNPPYFNS 123


>gi|126652833|ref|ZP_01724978.1| ribosomal protein L11 methyltransferase [Bacillus sp. B14905]
 gi|126590369|gb|EAZ84489.1| ribosomal protein L11 methyltransferase [Bacillus sp. B14905]
          Length = 313

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
             +G TV++IG G G L+     LGA+ V  ++ D+      ++  +  +  +++ +   
Sbjct: 173 IKEGDTVVDIGTGSGVLSIGAALLGAKNVHALDLDEVAVRSAQENVALNKVEDKVAVFHG 232

Query: 103 DALKVDFEK 111
           + L    E 
Sbjct: 233 NLLDTVKEP 241


>gi|311745184|ref|ZP_07718969.1| methyltransferase [Algoriphagus sp. PR1]
 gi|126577706|gb|EAZ81926.1| methyltransferase [Algoriphagus sp. PR1]
          Length = 264

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            V+EIG+G G  T++L++L    K+  ++ + +     K    +  +RL  +  DA K+D
Sbjct: 38  HVLEIGSGVGAQTKVLISLFPDLKITCVDAESKQLEKAKANLLEEADRLTFVHQDAQKLD 97

Query: 109 FEKFFNISSPIRIIANLP 126
            ++ F+ +    ++ ++P
Sbjct: 98  LDEKFDGAFLCWVLEHIP 115


>gi|19076043|ref|NP_588543.1| methyltransferase (predicted) [Schizosaccharomyces pombe 972h-]
 gi|74676086|sp|O74529|YJ48_SCHPO RecName: Full=Uncharacterized methyltransferase C70.08c
 gi|3192028|emb|CAA19358.1| methyltransferase (predicted) [Schizosaccharomyces pombe]
          Length = 260

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            + K I +         ++++G G G LT  L+    R+V+ I+         +++
Sbjct: 19 PKLTKDIVKRINLSSSDELLDLGCGDGVLTNELV-SQCRRVVGIDASPDMIKAAREL 74


>gi|27468195|ref|NP_764832.1| hypothetical protein SE1277 [Staphylococcus epidermidis ATCC 12228]
 gi|57867053|ref|YP_188734.1| hypothetical protein SERP1158 [Staphylococcus epidermidis RP62A]
 gi|251811007|ref|ZP_04825480.1| SAM dependent methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875981|ref|ZP_06284848.1| methyltransferase domain protein [Staphylococcus epidermidis SK135]
 gi|293366449|ref|ZP_06613126.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315741|gb|AAO04876.1|AE016748_110 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637711|gb|AAW54499.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|251805517|gb|EES58174.1| SAM dependent methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295006|gb|EFA87533.1| methyltransferase domain protein [Staphylococcus epidermidis SK135]
 gi|291319218|gb|EFE59587.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725418|gb|EGG61901.1| methyltransferase domain protein [Staphylococcus epidermidis
           VCU144]
 gi|329735269|gb|EGG71561.1| methyltransferase domain protein [Staphylococcus epidermidis
           VCU045]
          Length = 239

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I E     D   +++IG G GNLTQ+L +LG  +V  ++       I +  +    N+++
Sbjct: 26  IVEHFLPSDSHDLLDIGCGTGNLTQLLTSLG--EVTGMDISVDMLSIARQKT----NQVK 79

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
            I+ +    +  K FN+   I I  +    + T           +    ++   +F    
Sbjct: 80  WIEGNMTHFNLNKKFNM---ITIFCDSLNYLETLNDVKMTFERVYQHLNKNGVFIFDVHT 136

Query: 159 GERITAQKNSPHY 171
             ++    N+  Y
Sbjct: 137 VHKMKTLFNNKSY 149


>gi|146277053|ref|YP_001167212.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555294|gb|ABP69907.1| magnesium protoporphyrin O-methyltransferase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 222

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEI 99
                L G+ V++ G G G +T  L   GA +V  ++   Q   I +     +H +R+  
Sbjct: 53  RLPKDLTGLRVLDAGCGAGQMTAELAARGA-QVTAVDISPQLVEIARKRLPPEHLDRVTF 111

Query: 100 IQDDALKVDFEKF 112
              D L  D   F
Sbjct: 112 ASGDMLSDDLGPF 124


>gi|255020470|ref|ZP_05292535.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970080|gb|EET27577.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus
           caldus ATCC 51756]
          Length = 440

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK--D 88
           ++  ++++         G  ++++  G GN T  +  LGAR +  +E D +     +   
Sbjct: 278 INPVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARAL-GVEGDTRLVAQARFNA 336

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
             +    R   I  D  +         +   +++ + P +    +L
Sbjct: 337 ELNGLAARAHFIAADLTQTALADLPGAAGVRKMLIDPPRSGAIEIL 382


>gi|229488227|gb|ACQ73747.1| M.SdaI [Streptomyces diastaticus]
          Length = 486

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 17/136 (12%)

Query: 7   SHSLKTILSHYKIIPKKY--MGQNF--LLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           S   +   +  K+ P+    +GQ F  +    ++  +         + V++ GAG G+L+
Sbjct: 6   STETRRQAALGKLDPRTQAVLGQFFTPVKAATLMASMLRVDDLSGSVRVLDPGAGAGSLS 65

Query: 63  QMLLTLG-------ARKVIVIEKDQQFFPILKDISSQ----HPNRLEIIQDDALKVDFEK 111
             L+          A  V+ +E D    P L+    +    +    ++++ D L  +  +
Sbjct: 66  AALVDRLHTERPDVAVHVVAVETDPFITPYLRATLEECQTAYGISYDLVEGDYLLDEGAE 125

Query: 112 FFNISSPIRIIANLPY 127
                    +IAN PY
Sbjct: 126 L--DGPFDFVIANPPY 139


>gi|251796222|ref|YP_003010953.1| ribosomal protein L11 methyltransferase [Paenibacillus sp. JDR-2]
 gi|247543848|gb|ACT00867.1| ribosomal protein L11 methyltransferase [Paenibacillus sp. JDR-2]
          Length = 333

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                 VI++G G G L    + LGAR+V+ ++ D        +    +   + +E+++ 
Sbjct: 172 IKGDEEVIDVGTGSGILAIGAMKLGARRVLALDLDPVAVSSATENIRLNGLQDDVEVLES 231

Query: 103 DAL 105
           D L
Sbjct: 232 DLL 234


>gi|27065262|pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065263|pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065264|pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065265|pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065266|pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065267|pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065268|pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065269|pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065280|pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065281|pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065282|pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065283|pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065284|pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065285|pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065286|pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065287|pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065292|pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup With Short
           Cell
 gi|27065293|pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup With Short
           Cell
 gi|27065294|pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup With Short
           Cell
 gi|27065295|pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup With Short
           Cell
 gi|27065298|pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|27065299|pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|27065300|pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|27065301|pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|27065302|pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|27065303|pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|33356903|pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
           Decarboxylase, The Product Of Gene Mt0146 In The
           Methanobacterium Thermoautotrophicum Genome
 gi|33356904|pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
           Decarboxylase, The Product Of Gene Mt0146 In The
           Methanobacterium Thermoautotrophicum Genome
 gi|33356905|pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
           Decarboxylase, The Product Of Gene Mt0146 In The
           Methanobacterium Thermoautotrophicum Genome
 gi|33356906|pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
           Decarboxylase, The Product Of Gene Mt0146 In The
           Methanobacterium Thermoautotrophicum Genome
          Length = 192

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNR 96
           I   +        +++G G G +T  L     R+V  I+++ +     +    +H   + 
Sbjct: 25  IXCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEXNLQRHGLGDN 83

Query: 97  LEIIQDDA 104
           + + + DA
Sbjct: 84  VTLXEGDA 91


>gi|332669941|ref|YP_004452949.1| type 11 methyltransferase [Cellulomonas fimi ATCC 484]
 gi|332338979|gb|AEE45562.1| Methyltransferase type 11 [Cellulomonas fimi ATCC 484]
          Length = 249

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          +  ++  + G      V+++G GPG LT  L+   A +V  ++  + F   ++       
Sbjct: 21 LADEVVATLGVGPTDAVLDVGCGPGALTSRLVGR-AGRVAAVDPAEPFVAAVRTRLPDVD 79

Query: 95 NR 96
           R
Sbjct: 80 VR 81


>gi|325926618|ref|ZP_08187932.1| protein-L-isoaspartate carboxylmethyltransferase [Xanthomonas
           perforans 91-118]
 gi|325542970|gb|EGD14419.1| protein-L-isoaspartate carboxylmethyltransferase [Xanthomonas
           perforans 91-118]
          Length = 218

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           ++ ++     G  V+EIG G G  T  L  L AR+V+ +E D 
Sbjct: 70  RMLQALDLQPGEDVLEIGTGSGFATACLAAL-AREVLSLEIDP 111


>gi|325569975|ref|ZP_08145934.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156942|gb|EGC69111.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 214

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L +IAE +G      V+E G+G GNLTQ LLT G + V+ IE   +   I K  S  
Sbjct: 35  EQLLAEIAEKAGRS----VVEFGSGTGNLTQALLTQG-KNVLAIEPSPEMRRIAK--SKP 87

Query: 93  HPNRLEIIQDD 103
             +++  +  D
Sbjct: 88  SLSKVTFVDGD 98


>gi|168029186|ref|XP_001767107.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681603|gb|EDQ68028.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 381

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--P 94
             I +++    G TV+++G G G L       GARKV  +E         + + + +   
Sbjct: 56  DSIFKNARHFKGKTVLDVGTGSGILAIWSAQAGARKVYAVEA-TDMATHARALVAGNKME 114

Query: 95  NRLEIIQD 102
           N +E+I+ 
Sbjct: 115 NVVEVIEG 122


>gi|260598958|ref|YP_003211529.1| hypothetical protein CTU_31660 [Cronobacter turicensis z3032]
 gi|260218135|emb|CBA32941.1| Uncharacterized protein yfiC [Cronobacter turicensis z3032]
          Length = 256

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKDISSQHP--NRLE 98
           +       V++IGAG G L  ML       V    +E D Q     ++  +  P   R++
Sbjct: 51  APVAKAQRVLDIGAGSGLLALMLAQRTDDTVTLDAVELDSQAAEQARENVAASPWAARIQ 110

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +   D      ++         I++N PY 
Sbjct: 111 VHDADIQAWAQQQ---TQRYELIVSNPPYY 137


>gi|66768045|ref|YP_242807.1| hypothetical protein XC_1722 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|66573377|gb|AAY48787.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 207

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103
           L G  V+++ AG G L    ++ GA   ++IE+D      L++  ++     +++++QDD
Sbjct: 55  LAGARVLDLFAGSGALGLEAVSRGAAHALLIERDPGLAQRLREHVARLRATEQVQVLQDD 114

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIG--TRLLFNW---ISADTWPPFWESLTLLFQKEV 158
           AL+  + +    S    +  + P+  G    +L      ++A+ W        L  Q   
Sbjct: 115 ALR--WLERAPTSQVDLVFVDPPFAAGLWAPVLERLSPHLAAEAWLYLETPAELPPQVPP 172

Query: 159 GERI 162
           G  +
Sbjct: 173 GWHL 176


>gi|40445312|ref|NP_954772.1| methyltransferase [Gordonia westfalica]
 gi|40217342|emb|CAE09093.1| putative methyltransferase [Gordonia westfalica]
          Length = 206

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G   G  V E+G G G  T+++L   GA +V  ++ D       +    +H  R  + + 
Sbjct: 32  GRTPGAHVAELGCGSGYGTRLILDEFGAARVDAVDLDPAMISRARHRLRRHTGRAHLARG 91

Query: 103 DA 104
            A
Sbjct: 92  SA 93


>gi|284999233|ref|YP_003421001.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sulfolobus
           islandicus L.D.8.5]
 gi|284447129|gb|ADB88631.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sulfolobus
           islandicus L.D.8.5]
          Length = 220

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 19/91 (20%)

Query: 32  DLNILKK------------------IAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARK 72
           D N + K                  I +     +   V+EIG G G  T ++   +G   
Sbjct: 39  DPNYIDKPFYVTPNITTTALSLGIYILDILNLEENQKVLEIGTGIGYYTALIAEVVGENN 98

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           ++ IE D   F   K++       +++++ D
Sbjct: 99  IVSIEIDDTMFEYAKNVLLIRYPLIKLLKTD 129


>gi|170077894|ref|YP_001734532.1| hypothetical protein SYNPCC7002_A1279 [Synechococcus sp. PCC 7002]
 gi|169885563|gb|ACA99276.1| hypothetical protein, putative [Synechococcus sp. PCC 7002]
          Length = 274

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  I           ++EIG+GPGN TQ     G   +I +E + +           
Sbjct: 39  PEIIDLICGKI--KPESVILEIGSGPGNATQHFAQRG-FSLICLEPNPRACEFAAQRFQN 95

Query: 93  HPNRLEIIQ 101
           +P  ++II 
Sbjct: 96  YP--IQIIN 102


>gi|257386176|ref|YP_003175949.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257168483|gb|ACV46242.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 241

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ---HPNRLE 98
           +   ++G   +E GAG GN T  LL  GA +V  +  D+      ++  +      +RL 
Sbjct: 12  ADRPVEGRRCLEAGAGVGNATAGLLDAGAERVYAVTNDRAHARTTRERVADGDTRSDRLA 71

Query: 99  IIQDD 103
           +++ D
Sbjct: 72  VLESD 76


>gi|307823227|ref|ZP_07653457.1| ribosomal L11 methyltransferase [Methylobacter tundripaludum SV96]
 gi|307736002|gb|EFO06849.1| ribosomal L11 methyltransferase [Methylobacter tundripaludum SV96]
          Length = 242

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G  V++IG G G L  M   LGA KV  +E  Q  F       +  P  +RLE +  
Sbjct: 33  VNPGDRVLDIGTGTGVLALMAAQLGAAKVTAVELTQVAFKEADINFNNSPWVDRLEAVHQ 92

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D                 II+N P+
Sbjct: 93  DIQSF---ALTASRQYDLIISNPPF 114


>gi|239616540|ref|YP_002939862.1| TrkA-N domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505371|gb|ACR78858.1| TrkA-N domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 348

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           ++I ++   L G  ++ IGAG   LT    L    +KV+++++D+Q    L     +   
Sbjct: 101 RRILKAIEKLTGHCIV-IGAGTVGLTVAKELARKGKKVVIVDRDEQLISHL---LDEEKK 156

Query: 96  RLEIIQDDA 104
            L  +  DA
Sbjct: 157 NLYYVLGDA 165


>gi|330823808|ref|YP_004387111.1| methyltransferase small [Alicycliphilus denitrificans K601]
 gi|329309180|gb|AEB83595.1| methyltransferase small [Alicycliphilus denitrificans K601]
          Length = 379

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L   G R+V+  E   +     +D   +    +R+
Sbjct: 192 VAQAPLPGTSLAFDIGTGTGVLAAVLARRGVRRVVATELAPRALACAQDNLRRLGLQDRV 251

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E++  D         F       ++ N P+
Sbjct: 252 ELLAAD--------LFPPGRAPLVVCNPPW 273


>gi|319763928|ref|YP_004127865.1| methyltransferase small [Alicycliphilus denitrificans BC]
 gi|317118489|gb|ADV00978.1| methyltransferase small [Alicycliphilus denitrificans BC]
          Length = 379

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
              +         +IG G G L  +L   G R+V+  E   +     +D   +    +R+
Sbjct: 192 VAQAPLPGTSLAFDIGTGTGVLAAVLARRGVRRVVATELAPRALACAQDNLRRLGLQDRV 251

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E++  D         F       ++ N P+
Sbjct: 252 ELLAAD--------LFPPGRAPLVVCNPPW 273


>gi|254293447|ref|YP_003059470.1| methyltransferase small [Hirschia baltica ATCC 49814]
 gi|254041978|gb|ACT58773.1| methyltransferase small [Hirschia baltica ATCC 49814]
          Length = 244

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 40  AESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NR 96
           A S  +     ++E G G G  L      L    V  +E+D++   + +   +++   +R
Sbjct: 33  AASLEAAPKQRILEAGCGAGAALLSCAHRLQGVHVAGLERDERMLALAQQNVAENALQDR 92

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
           +E+ Q D   V       +++  ++ +N P+   + +
Sbjct: 93  VEVFQGD---VSNRPDSLLNAYDQVFSNPPFFNPSTI 126


>gi|145596578|ref|YP_001160875.1| ubiquinone/menaquinone biosynthesis methyltransferase [Salinispora
           tropica CNB-440]
 gi|145305915|gb|ABP56497.1| demethylmenaquinone methyltransferase [Salinispora tropica CNB-440]
          Length = 252

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 9/88 (10%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
             GQ    D    +    +     G  V+++GAG G  T  L   G   V  +  D    
Sbjct: 54  SFGQ----DRFWRRATRAALDLRPGERVLDVGAGTGVSTGELARSG---VYAVGADLSLG 106

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEK 111
            +     ++    + ++  DAL++ F  
Sbjct: 107 MLAAGRRTR--PEVPLLAGDALRLPFAD 132


>gi|118473840|ref|YP_888196.1| tRNA (adenine-N(1)-)-methyltransferase [Mycobacterium smegmatis
           str. MC2 155]
 gi|118175127|gb|ABK76023.1| tRNA (adenine-N(1)-)-methyltransferase [Mycobacterium smegmatis
           str. MC2 155]
          Length = 282

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIE-KDQQFFPILKDI--- 89
             +I        G  V+E GAG G LT  LL        V   E +D       +++   
Sbjct: 91  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPEGSVTSYEVRDDHAVHAERNVVTF 150

Query: 90  SSQHPNRLEIIQDDALKVDFEK 111
             + P    ++  D    D  +
Sbjct: 151 FGERPANWNLVIGDVSDYDGPE 172


>gi|299471633|emb|CBN76855.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 817

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
             G+TV++IG G G L  +    GA  V   E +     + +++  ++   +R+ +I 
Sbjct: 78  KAGVTVLDIGTGTGILAVLAARAGASHVYACEVNSVLCDVAREVLERNGVADRVTVIH 135


>gi|282889615|ref|ZP_06298156.1| hypothetical protein pah_c002o066 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500538|gb|EFB42816.1| hypothetical protein pah_c002o066 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 213

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 52  IEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           +E GAG G  T ++L        + ++E D  F  +L+   + H + + I     L    
Sbjct: 57  LEAGAGTGVFTDVILEKMRPQDHLDIVEVDAVFCELLEKKYA-HKSNVHICNCSILDWHK 115

Query: 110 EKFFNI 115
           + F+++
Sbjct: 116 DAFYDV 121


>gi|227831677|ref|YP_002833457.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sulfolobus
           islandicus L.S.2.15]
 gi|227458125|gb|ACP36812.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sulfolobus
           islandicus L.S.2.15]
          Length = 220

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 19/91 (20%)

Query: 32  DLNILKK------------------IAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARK 72
           D N + K                  I +     +   V+EIG G G  T ++   +G   
Sbjct: 39  DPNYIDKPFYVTPNITTTALSLGIYILDILNLEENQKVLEIGTGIGYYTALIAEVVGENN 98

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           ++ IE D   F   K++       +++++ D
Sbjct: 99  IVSIEIDDTMFEYAKNVLLIRYPLIKLLKTD 129


>gi|188994132|ref|YP_001928384.1| protoporphyrinogen oxidase [Porphyromonas gingivalis ATCC 33277]
 gi|188593812|dbj|BAG32787.1| protoporphyrinogen oxidase [Porphyromonas gingivalis ATCC 33277]
          Length = 293

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           IL+K   ++  L    ++++G G G L   L      KV  ++         +    +  
Sbjct: 107 ILRKERPAAAPL---CLLDVGTGSGCLAITLARELRAKVWAMDISPDALATARTNVGE-D 162

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI---GTRLLFNWISADTWPPFW--ES 149
           +R+   + D L  D      +     I++N PY +      + ++ +  +     +  E 
Sbjct: 163 DRIFFFEGDILSPDNRWDV-LPPVDIIVSNPPYIMPAESADMAYHVLGHEPALALFAPEE 221

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGW---------------RTKATMMFDISPHV 194
             LLF K +   ++        GRL V                     +  +  D+S   
Sbjct: 222 DPLLFYKAIA-NLSGSGKLRSGGRLYVELNPLLAEATCEVFSAKVGWCEVRLHMDLSGKS 280

Query: 195 FFPSPK 200
            F S K
Sbjct: 281 RFLSAK 286


>gi|78044697|ref|YP_359278.1| ribosomal protein L11 methyltransferase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|123576948|sp|Q3AF06|PRMA_CARHZ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|77996812|gb|ABB15711.1| ribosomal protein L11 methyltransferase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 305

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
              G  V+++G G G L      LGA K+  ++ D     + ++  S  +  +++ +I++
Sbjct: 166 VSPGKVVVDVGTGSGILAIASALLGAEKIYALDIDPVAVKVARENISINRLEDKITVIEN 225

Query: 103 DALK 106
           D L 
Sbjct: 226 DLLH 229


>gi|288560192|ref|YP_003423678.1| SAM-dependent methyltransferase [Methanobrevibacter ruminantium M1]
 gi|288542902|gb|ADC46786.1| SAM-dependent methyltransferase [Methanobrevibacter ruminantium M1]
          Length = 271

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           KI E        T++++G G G++T  L    A+ V  ++   +   IL + + +
Sbjct: 50  KIIERINVSKEDTILDLGCGDGSITIPLAK-KAKSVTGVDSAYKMLEILNENAKK 103


>gi|213409952|ref|XP_002175746.1| methyltransferase [Schizosaccharomyces japonicus yFS275]
 gi|212003793|gb|EEB09453.1| methyltransferase [Schizosaccharomyces japonicus yFS275]
          Length = 262

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            +   I E +       V++IG G G LT+ L +  A    VI  D
Sbjct: 20 PQMTSSIVEMAKLKPTDRVLDIGCGDGVLTKKLSSQCAH---VIGVD 63


>gi|119714626|ref|YP_921591.1| methyltransferase type 11 [Nocardioides sp. JS614]
 gi|119535287|gb|ABL79904.1| Methyltransferase type 11 [Nocardioides sp. JS614]
          Length = 275

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 39/153 (25%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           + G     TV+E+GAG G LT++L++LG   V   + D+Q   +L++   +         
Sbjct: 35  AVGDQPT-TVLELGAGTGKLTEVLVSLG-HDVHATDPDEQMLAVLRERLPE--------- 83

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
              ++       +I +P      +         F+W   +   P    +           
Sbjct: 84  ---VRTSVAAAEDIPAPDASYDVVVAAQA----FHWFDHERALPEIARVL---------- 126

Query: 162 ITAQKNSPHYGRLSVLTGWRTK----ATMMFDI 190
              +      GRL+V+   R +       +  I
Sbjct: 127 ---KPG----GRLAVVWNARDERIPWVRRLGRI 152


>gi|108804028|ref|YP_643965.1| type 11 methyltransferase [Rubrobacter xylanophilus DSM 9941]
 gi|108765271|gb|ABG04153.1| Methyltransferase type 11 [Rubrobacter xylanophilus DSM 9941]
          Length = 265

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            +++ E+        V+E   G G   +M L         +E+D++    + +I     +
Sbjct: 35  TRRMLEALEIGVRDEVVEFAPGLGATARMALERRPASYTGVERDREAARRVAEILRG--D 92

Query: 96  RLEIIQDDA 104
           R   +  DA
Sbjct: 93  RRGCVVGDA 101


>gi|18310206|ref|NP_562140.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium perfringens str. 13]
 gi|18144885|dbj|BAB80930.1| precorrin-8w decarboxylase [Clostridium perfringens str. 13]
          Length = 197

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 29  FLLDLNILK----------KI--AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIV 75
           F+ D   ++          +I              ++IG+G G++T Q    +    V  
Sbjct: 3   FIKDSEFIRGKCPMTKEDIRILTISKLDLDKDSNFLDIGSGTGSITIQASKFIEVGSVFS 62

Query: 76  IEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106
           IE+D++   + K+   +   N + +++ DA++
Sbjct: 63  IERDEEAIRVTKENLKKFNCNNVTLLEGDAIE 94


>gi|47566562|ref|ZP_00237384.1| dimethyladenosine transferase [Bacillus cereus G9241]
 gi|228987627|ref|ZP_04147741.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157991|ref|ZP_04286062.1| Dimethyladenosine transferase [Bacillus cereus ATCC 4342]
 gi|47556592|gb|EAL14924.1| dimethyladenosine transferase [Bacillus cereus G9241]
 gi|228625444|gb|EEK82200.1| Dimethyladenosine transferase [Bacillus cereus ATCC 4342]
 gi|228772087|gb|EEM20539.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 212

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             + + D L  +     +
Sbjct: 91  FSVTEGDFLSFEVPNSID 108


>gi|218261867|ref|ZP_03476552.1| hypothetical protein PRABACTJOHN_02223 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223715|gb|EEC96365.1| hypothetical protein PRABACTJOHN_02223 [Parabacteroides johnsonii
          DSM 18315]
          Length = 191

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           D   L  I + +G   G+ +++IG G G L   LL    R+++ ++         +   
Sbjct: 21 HDPEKLNDILQRTGLRKGLRILDIGCGTGVLESYLLPYSPRQIVGVDLSPAMIEKARSKY 80

Query: 91 S 91
          +
Sbjct: 81 A 81


>gi|116004541|ref|NP_001070632.1| tRNA wybutosine-synthesizing protein 2 homolog [Danio rerio]
 gi|123905829|sp|Q0P466|TYW2_DANRE RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
 gi|112419413|gb|AAI22255.1| Zgc:153361 [Danio rerio]
          Length = 408

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQ 92
           NI +K+  +S    G TV+++ AG G  T   L+   A  V   E +      L+     
Sbjct: 204 NITEKLRIASFDCSGETVVDLYAGIGYFTLPYLVHANAAHVHACEWNPDAVAALQRNLEI 263

Query: 93  H--PNRLEIIQDDALKVDFEKFFN 114
           +   NR  + Q D  ++      +
Sbjct: 264 NGVSNRCTVHQGDNRQLSLSDLAD 287


>gi|154248154|ref|YP_001419112.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Xanthobacter autotrophicus Py2]
 gi|154162239|gb|ABS69455.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Xanthobacter autotrophicus Py2]
          Length = 220

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           +L++  IL ++ + +   +   V+++G G G  +  +L+  A++V+ +E+D
Sbjct: 63  YLIEPMILARLVQLADVQEHEHVLDVGTGTGY-SAAVLSRLAQQVVAVEED 112


>gi|325960210|ref|YP_004291676.1| type 11 methyltransferase [Methanobacterium sp. AL-21]
 gi|325331642|gb|ADZ10704.1| Methyltransferase type 11 [Methanobacterium sp. AL-21]
          Length = 275

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           +NKS     I   +K   KK          +  +K+ +   +    +V++IG G G +T 
Sbjct: 30  SNKSKDWDNIAKKFKEWMKK---------DDYPEKLLDKIKTHPNNSVLDIGCGEGTITL 80

Query: 64  MLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKF 112
            +      +V  I+   +   IL +   ++    L  +Q D + +  E  
Sbjct: 81  EIAKH-VSEVTCIDLSTEMLEILDQKAQTEGIKNLTYLQGDMMDISLESL 129


>gi|323139612|ref|ZP_08074656.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylocystis sp.
           ATCC 49242]
 gi|322395162|gb|EFX97719.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylocystis sp.
           ATCC 49242]
          Length = 412

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N + ++ E   +  G TV+E+G G G L   +   GA  +  +   ++     +D+SS+
Sbjct: 182 RNKIDRVVELLDAHKGETVLEVGCGWGGLAPEMAKAGAGAITGLTLSKEQLANARDVSSK 241

Query: 93  HPNRLEI 99
           H  + ++
Sbjct: 242 HGLQAQV 248


>gi|226304575|ref|YP_002764533.1| tRNA (guanine-N(7)-)-methyltransferase [Rhodococcus erythropolis
           PR4]
 gi|226183690|dbj|BAH31794.1| tRNA (guanine-N(7)-)-methyltransferase [Rhodococcus erythropolis
           PR4]
          Length = 252

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
            +   +IEIG+G G  T  +        +I IE        +L+ +  +    + +++ D
Sbjct: 77  REAPLIIEIGSGTGTATAAMAKAEPHVNLIAIEVYRPGLAQLLQQVEREEIPNVRVLRGD 136

Query: 104 ALKV 107
           A+ V
Sbjct: 137 AMDV 140


>gi|209965442|ref|YP_002298357.1| hypothetical protein RC1_2157 [Rhodospirillum centenum SW]
 gi|209958908|gb|ACI99544.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 323

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            G    ++V++IGAG G  T+ +       V  +E D       K +S +
Sbjct: 102 LGLNPAMSVLDIGAGLGGSTRTMAQQCGAWVTGLEHDPVLAEKAKQLSQK 151


>gi|171058807|ref|YP_001791156.1| methyltransferase small [Leptothrix cholodnii SP-6]
 gi|170776252|gb|ACB34391.1| methyltransferase small [Leptothrix cholodnii SP-6]
          Length = 392

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 15/138 (10%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRL 97
              +         +IG G G L  +L+  G   V+  + D +      D  ++     R+
Sbjct: 206 VAQAPLPSETLAFDIGTGTGVLAALLVRRGVEHVVATDTDPRALACAADNLARLGCTARV 265

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
           E+++ D         F       ++ N P+  G     + +    + P    +   F   
Sbjct: 266 ELLKTD--------LFPSGRAPLVVCNPPWLPGKP--SSALEHAIYDPD-SRMLRGFLSG 314

Query: 158 VGERITAQKNSPHYGRLS 175
           +   +        +  LS
Sbjct: 315 LAAHLA--PGGEGWLILS 330


>gi|307309444|ref|ZP_07589103.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
 gi|306900174|gb|EFN30793.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
          Length = 266

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNR 96
           K  + +G  DG  V+++G G G+LT  L      +++  I+    F       ++    R
Sbjct: 27  KFIDFAGVADGEKVLDVGCGTGSLTFALADAARLKEIAAIDYSTVFVEEATRRNTN--PR 84

Query: 97  LEIIQDDALKVDFEK 111
           ++I + DA  + FE 
Sbjct: 85  IKIREADACALPFED 99


>gi|302348127|ref|YP_003815765.1| hypothetical protein ASAC_0327 [Acidilobus saccharovorans 345-15]
 gi|302328539|gb|ADL18734.1| hypothetical protein ASAC_0327 [Acidilobus saccharovorans 345-15]
          Length = 187

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHP-NRLEII 100
                G+TV+++G+GPG  T  +   +   KV  ++ D++   I+ + +S+   + +E++
Sbjct: 23  LRLQPGMTVVDLGSGPGRFTIPVAKIVAPGKVYAVDIDKESLRIVAEKASEEGLSNVEVV 82

Query: 101 QDDA 104
           + DA
Sbjct: 83  EADA 86


>gi|292654936|ref|YP_003534833.1| N-methyltransferase-like protein [Haloferax volcanii DS2]
 gi|291371657|gb|ADE03884.1| N-methyltransferase-like protein [Haloferax volcanii DS2]
          Length = 251

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 11/148 (7%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILK 87
           L+D    + +  + G ++   ++EI  G G  T ML   GA  V+ ++  +        K
Sbjct: 27  LIDRREKEAVLAALGPVEDKNILEIACGTGRFTVMLAQEGAN-VVGLDISRAMMVQGREK 85

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG---TRLLFNWISADTWP 144
              +   +R+E ++ DA ++     F       + A   +++     + L          
Sbjct: 86  ARRAGVADRIEFLRGDAARLP----FPDDHFDAVFAMRFFHLADAPAKFLAEMARVSKGQ 141

Query: 145 PFWESLTLLFQKEVGERITAQKNSPHYG 172
            F+++      + V         S  Y 
Sbjct: 142 VFFDTFNDGSLR-VAYNWLLPMGSRLYS 168


>gi|269467852|gb|EEZ79595.1| SAM-dependent methyltransferase [uncultured SUP05 cluster
           bacterium]
          Length = 203

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 11/135 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
                +I++G G   L   LL  G  K+ ++E         K+    H +++    ++ L
Sbjct: 39  SKDDAIIDVGCGVSVLADNLLNEGYCKLSLLELSPTAIQTTKNRLKDHSDKVNFYNENIL 98

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
                  F++     +   L      +   N ++            L FQ        A 
Sbjct: 99  DFQSNTQFDLWHDRAVFHFLTDKKDQQTYLNKLNQ----------YLKFQGYFLLATFAP 148

Query: 166 KNSPHYGRLSVLTGW 180
                   L++   +
Sbjct: 149 TGPKECSELNI-VQY 162


>gi|224370439|ref|YP_002604603.1| putative SAM-dependent methyltransferase [Desulfobacterium
           autotrophicum HRM2]
 gi|223693156|gb|ACN16439.1| putative SAM-dependent methyltransferase [Desulfobacterium
           autotrophicum HRM2]
          Length = 288

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L    IL  + ++     G  +++IG+GPGN    ++ +GA +V+ +E       ILK+ 
Sbjct: 54  LRKERILSMLEDAGALQAGNRILDIGSGPGNWAIPMVEMGA-EVVAVEPSGGMVKILKEK 112

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNIS 116
            +        I  D L++D   + ++ 
Sbjct: 113 MAAKG-----IHSDQLRIDQRAWQDVD 134


>gi|218259481|ref|ZP_03475204.1| hypothetical protein PRABACTJOHN_00862 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225074|gb|EEC97724.1| hypothetical protein PRABACTJOHN_00862 [Parabacteroides johnsonii
           DSM 18315]
          Length = 257

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  I +         ++EIG G G   +  L LG  +V  I+ +     I K+I S 
Sbjct: 21  KYVIPFIEKHKPITADSHILEIGCGEGGNIKPFLDLGC-QVTGIDINGGQIEIAKEIYSA 79

Query: 93  HPN--RLEIIQDDALKVD--FEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           H N   L +I +D  KV     KF  I     I       +    +  +++  
Sbjct: 80  HTNNKNLTLICEDIYKVTELHNKFDIIIIRDVIEHIPNQELFLPFIKRFLNPH 132


>gi|260809990|ref|XP_002599787.1| hypothetical protein BRAFLDRAFT_70257 [Branchiostoma floridae]
 gi|229285069|gb|EEN55799.1| hypothetical protein BRAFLDRAFT_70257 [Branchiostoma floridae]
          Length = 293

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 21/104 (20%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI------SSQH 93
            +  G  +G  V+++G+G G   + L       V   E      P   DI       S  
Sbjct: 72  IDKIGIGEGDKVLDVGSGIGGPARFLAHATKCDVTACE----LLPENHDIGVDLTNRSGM 127

Query: 94  PNRLEIIQDDALKVDFEK-----------FFNISSPIRIIANLP 126
            N +  +  D L  D  +           FF++S+   +     
Sbjct: 128 GNNVTHVCGDILTADLGEESFDSIMSIQVFFHVSNKAAVYKRCF 171


>gi|167534286|ref|XP_001748821.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772783|gb|EDQ86431.1| predicted protein [Monosiga brevicollis MX1]
          Length = 930

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQH 93
           ++ +A+      G  VI IG+G G   + L      +V+  E          +++  +  
Sbjct: 352 VEDVAQLLKMSTGDRVINIGSGLGGPARYLAGKHGCQVLACEVQPDLHAAAAELTLRTGL 411

Query: 94  PNRLEIIQDDALKV 107
            ++++ +  D  ++
Sbjct: 412 NDKVDHVNGDFSRL 425


>gi|121534416|ref|ZP_01666239.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Thermosinus carboxydivorans Nor1]
 gi|121306909|gb|EAX47828.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Thermosinus carboxydivorans Nor1]
          Length = 200

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 38  KIAE--SSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +I     +    G TVI+IGAG G+L+ +    +   +V  IE+D     +++  + +  
Sbjct: 26  RIVALAKAKIASGNTVIDIGAGTGSLSVEAAFQVKEGRVFAIERDGNGVDLIRQNARRFG 85

Query: 95  -NRLEIIQDDA 104
              + +IQ +A
Sbjct: 86  RENITVIQGNA 96


>gi|161528198|ref|YP_001582024.1| tRNA methyltransferase complex GCD14 subunit [Nitrosopumilus
           maritimus SCM1]
 gi|160339499|gb|ABX12586.1| tRNA methyltransferase complex GCD14 subunit [Nitrosopumilus
           maritimus SCM1]
          Length = 293

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKD--ISSQHP 94
           I   +G   G  ++EIG G G+LT  + +       V   + D+ F  I +     +   
Sbjct: 88  IIARAGIESGQKILEIGTGSGSLTSCVASIVKPRGHVYTFDVDENFMKIAEKNIEKAGVS 147

Query: 95  NRLEIIQDDA-------LKVDFEKFFNISSPIRII 122
             +     D        LK       ++  P  +I
Sbjct: 148 KYVTQHNQDLKTAKKMPLKDMDVALIDLGDPWIVI 182


>gi|153953538|ref|YP_001394303.1| ribosomal protein L11 methyltransferase [Clostridium kluyveri DSM
           555]
 gi|219854160|ref|YP_002471282.1| hypothetical protein CKR_0817 [Clostridium kluyveri NBRC 12016]
 gi|189037694|sp|A5N6M4|PRMA_CLOK5 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254783297|sp|B9E043|PRMA_CLOK1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|146346419|gb|EDK32955.1| PrmA [Clostridium kluyveri DSM 555]
 gi|219567884|dbj|BAH05868.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 312

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISSQHPNRLEIIQDD 103
                 V +IG G G L      LGA++V  ++ D       LK+IS  +   +++   +
Sbjct: 174 VRPESNVFDIGTGSGILAIAASKLGAKEVTAVDLDPVAVESALKNISYNNIKNIKVFHGN 233

Query: 104 ALK 106
            ++
Sbjct: 234 LME 236


>gi|118161371|gb|ABK64054.1| putative protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Janthinobacterium lividum]
          Length = 216

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +I +         V+EIG G G +   LL   AR V  +E      P LK ++ Q
Sbjct: 67  ARILQDVAVKKHENVLEIGTGSGYM-AALLAHKARHVTSVEI----VPQLKTLAEQ 117


>gi|58426726|gb|AAW75763.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 311

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L+   ++     +++++Q+D
Sbjct: 160 LPGARVLDLFAGSGALGLEAVSRGAGHATLIERDSSLVQRLRAHVTRLDAATQVQVLQED 219

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           A++   E+     + I  +           +   + A      W
Sbjct: 220 AVR-WLERAPAALADIVFVDPPFAACLWPAVLERLPAHVAADAW 262


>gi|15889027|ref|NP_354708.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium
           tumefaciens str. C58]
 gi|15156818|gb|AAK87493.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium
           tumefaciens str. C58]
          Length = 223

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-P 94
           L K+ + +       V+E+G G G     +L+  A  V+ +E D+       +  +    
Sbjct: 73  LAKLLQLAAVSKDDVVLEVGGGSGY-AAAILSQLAGSVVSLESDEALAAQATETLASLGY 131

Query: 95  NRLEIIQDD 103
           + + ++  D
Sbjct: 132 DNVAVVTGD 140


>gi|56420608|ref|YP_147926.1| SAM-dependent methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56380450|dbj|BAD76358.1| SAM-dependent methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 189

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
          +D    +K           T++++GAG G  T  L       V  ++   +   +LK  +
Sbjct: 23 IDP---EKAVSVLSVKPDDTIMDLGAGNGYFTIPLAQATNGNVYAVDVQPEMIELLKQRA 79

Query: 91 SQ 92
           Q
Sbjct: 80 RQ 81


>gi|319956868|ref|YP_004168131.1| methyltransferase type 12 [Nitratifractor salsuginis DSM 16511]
 gi|319419272|gb|ADV46382.1| Methyltransferase type 12 [Nitratifractor salsuginis DSM 16511]
          Length = 198

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 56/141 (39%), Gaps = 10/141 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + + I +       + ++++GAG G L + L      KV+ ++        L +++ +
Sbjct: 21  ETVARVIIQKIDLNPSMHLLDLGAGTGLLARRLAPY-VGKVVAVDTSSGMLQKLSEVAPE 79

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI-GTRLLFNWISADTWPPFWESLT 151
               +E +  D L    E+ F+      + +   ++I  T+LL   + +      + +L 
Sbjct: 80  ----IERVHSDILSYRPEEKFDG----IVSSMTLHHIEDTQLLMRHLRSLLKEDGFIALA 131

Query: 152 LLFQKEVGERITAQKNSPHYG 172
            L  ++        +   H+G
Sbjct: 132 DLAPEKGDFHDGGNEGVYHFG 152


>gi|307132341|ref|YP_003884357.1| L-isoaspartate protein carboxylmethyltransferase type II [Dickeya
           dadantii 3937]
 gi|306529870|gb|ADM99800.1| L-isoaspartate protein carboxylmethyltransferase type II [Dickeya
           dadantii 3937]
          Length = 208

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E         V+EIG G G  T +L  L  R V  +E+       L+  + +
Sbjct: 61  PYIVARMTELLQLTPESRVLEIGTGSGYQTAILAHL-VRHVFSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I + L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWASKGPFDAIIVTAAPPEIPSALMAQL 162


>gi|269128834|ref|YP_003302204.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Thermomonospora curvata DSM 43183]
 gi|268313792|gb|ACZ00167.1| protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Thermomonospora curvata DSM 43183]
          Length = 436

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAG--PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           I  ++ E +    G+ V+EIG+G     L   ++      V+ I+ D +       + S+
Sbjct: 93  IQARMIEMADIHPGMAVLEIGSGGYNAALLAEIVG-PDGYVVSIDIDSEIVERAGALLSR 151

Query: 93  --HPNRLEIIQDDA 104
             +  R+ ++  DA
Sbjct: 152 TGYGGRVSVVHADA 165


>gi|88703709|ref|ZP_01101425.1| UbiE/COQ5 methyltransferase [Congregibacter litoralis KT71]
 gi|88702423|gb|EAQ99526.1| UbiE/COQ5 methyltransferase [Congregibacter litoralis KT71]
          Length = 218

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLE 98
              +  L G  ++++G G G LTQM         +  ++ D     + K   +    R+ 
Sbjct: 39  VNQAAPLAGQHLLDVGCGTGTLTQMFAEREPSLTITGLDADSGALELAKTKFASMDQRVS 98

Query: 99  IIQD 102
           + Q 
Sbjct: 99  LWQG 102


>gi|119716863|ref|YP_923828.1| tRNA (adenine-58-N(1)-) methyltransferase [Nocardioides sp. JS614]
 gi|119537524|gb|ABL82141.1| tRNA (adenine-58-N(1)-) methyltransferase [Nocardioides sp. JS614]
          Length = 316

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I        G  VIE G G G LT  LL       +V   E+ ++F  + +   +Q 
Sbjct: 101 AAQIVALVDIFPGAHVIEAGVGSGALTCSLLRAVGPYGRVSSYERREEFAEVARRNVTQF 160


>gi|284167436|ref|YP_003405714.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284017091|gb|ADB63041.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 220

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 30  LLDLNILK-KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPIL 86
           LL   I + ++ +      G  ++E+G G G  T M+      +  +  ++   +    L
Sbjct: 45  LLRPVITRSRLRDVLEPQPGERILEVGPGTGYYTGMVARAIEPSGTLHAVDVQSEMVEHL 104

Query: 87  KDISSQHPN-RLEIIQDDALKVDFEK 111
           +    Q     +E I+ DA  + +  
Sbjct: 105 RTRMQQEGTLNVEPIRGDARSLPYPD 130


>gi|196037078|ref|ZP_03104398.1| dimethyladenosine transferase [Bacillus cereus W]
 gi|195990312|gb|EDX54360.1| dimethyladenosine transferase [Bacillus cereus W]
          Length = 50

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           E  L  A I+ ++R E LSI+DF ++ + L +
Sbjct: 16  EKGLALADIKPSIRGEALSIQDFGKLADALKE 47


>gi|159029653|emb|CAO87731.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 242

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 47  DGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103
               ++EIG G G LT+M+L      K+I I+ +      ++   S +   + L +IQDD
Sbjct: 49  KESLILEIGCGDGELTEMILSEAKNIKIIAIDNEPSMIQKIRSRLSHYLSQDTLVVIQDD 108

Query: 104 ALKV 107
            L  
Sbjct: 109 VLNF 112


>gi|110799361|ref|YP_696707.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           ATCC 13124]
 gi|122958752|sp|Q0TNT3|PRMA_CLOP1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|110674008|gb|ABG82995.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           ATCC 13124]
          Length = 313

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 32  DLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           D    +   ++         TV +IG G G L  +   LGA+ V+ ++ D       K+ 
Sbjct: 160 DHETTRMCVQALDKYVKADTTVFDIGTGSGILALVASKLGAKHVLGVDLDPVAVDSAKEN 219

Query: 90  SSQHP-NRLEIIQDDALKV 107
            S +  + +E++  + L V
Sbjct: 220 ISFNNVDNIEVLYGNLLDV 238


>gi|84500215|ref|ZP_00998481.1| hypothetical protein OB2597_09744 [Oceanicola batsensis HTCC2597]
 gi|84392149|gb|EAQ04417.1| hypothetical protein OB2597_09744 [Oceanicola batsensis HTCC2597]
          Length = 257

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLE 98
           A S G+  G +V+++G G G  +  L    A  ++  +E+   +  + +  + ++    E
Sbjct: 35  AASVGARPGQSVLDLGCGAGAASLCLGRRVAGLRLTGLERQPVYAELARRNAIENGLAFE 94

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +++ D    D        S   +IAN PY
Sbjct: 95  VVEGDL--SDMPTHLRQRSFDHVIANPPY 121


>gi|326444253|ref|ZP_08218987.1| hypothetical protein SclaA2_24444 [Streptomyces clavuligerus ATCC
           27064]
          Length = 272

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEI 99
           E S       V++IG GPG +T  L  L    +V  +++D       +  ++       +
Sbjct: 35  ELSELPPDARVLDIGCGPGTITADLAALVPHGRVTGVDRDPGVVERARAHAAGRG----L 90

Query: 100 IQDDALKVDFEKFFNISSPIRIIA 123
              D    D     +      ++ 
Sbjct: 91  ANADFAVADVNALDHPDGSFDVVH 114


>gi|319796507|ref|YP_004158147.1| cyclopropane-fatty-acyL-phospholipid synthase [Variovorax paradoxus
           EPS]
 gi|315598970|gb|ADU40036.1| Cyclopropane-fatty-acyl-phospholipid synthase [Variovorax paradoxus
           EPS]
          Length = 408

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +++  E +    G  V+EIG G G L +M        V  +    +     +  ++    
Sbjct: 184 VRRALELANVKPGDRVLEIGCGWGALAEMAAFDFGASVTGVTLSTEQLAFARQRTAGLSA 243

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRI 121
            L +   D   +D   F  I S   +
Sbjct: 244 DLRL--QDYRDIDDAPFDAICSIEMV 267


>gi|300856355|ref|YP_003781339.1| putative cobalt-precorrin-6Y C(15)-methyltransferase [Clostridium
           ljungdahlii DSM 13528]
 gi|300436470|gb|ADK16237.1| predicted cobalt-precorrin-6Y C(15)-methyltransferase [Clostridium
           ljungdahlii DSM 13528]
          Length = 188

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 38  KI--AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94
           +I      G      V+++GAG G+++  +  + ++ +V+ +EK+++   +++    +  
Sbjct: 22  RILSIAKLGIEPDFRVLDVGAGTGSVSVQMAKICSKGQVVAVEKNEEALSVIEKNIDKFN 81

Query: 95  -NRLEIIQDDALKVD--FEKFFN 114
            N L +++ +AL+V+   E +F+
Sbjct: 82  VNNLTVVKGEALEVEESIEPYFD 104


>gi|294815916|ref|ZP_06774559.1| Putative methyltransferase-UbiE family [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328515|gb|EFG10158.1| Putative methyltransferase-UbiE family [Streptomyces clavuligerus
           ATCC 27064]
          Length = 286

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEI 99
           E S       V++IG GPG +T  L  L    +V  +++D       +  ++       +
Sbjct: 49  ELSELPPDARVLDIGCGPGTITADLAALVPHGRVTGVDRDPGVVERARAHAAGRG----L 104

Query: 100 IQDDALKVDFEKFFNISSPIRIIA 123
              D    D     +      ++ 
Sbjct: 105 ANADFAVADVNALDHPDGSFDVVH 128


>gi|183984396|ref|YP_001852687.1| methylase [Mycobacterium marinum M]
 gi|183177722|gb|ACC42832.1| methylase [Mycobacterium marinum M]
          Length = 247

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E  G + G  V+++  G G+ T++L   GA +V+ ++  ++   + +    Q P  ++ +
Sbjct: 33  EHIGDVSGKKVLDVACGEGHFTRLLRRAGAGQVVGLDISERMIALARAQEKQQPLGIDYV 92

Query: 101 QDDA 104
             DA
Sbjct: 93  VADA 96


>gi|83945407|ref|ZP_00957755.1| hemolysin A [Oceanicaulis alexandrii HTCC2633]
 gi|83851241|gb|EAP89098.1| hemolysin A [Oceanicaulis alexandrii HTCC2633]
          Length = 245

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 8/129 (6%)

Query: 41  ESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLE 98
           ++ G    G   ++IG+  G  T++LL  GA +V+ ++  +    P L+     HP  L 
Sbjct: 69  DAFGVDPAGKRCLDIGSSTGGFTEVLLERGAARVVAVDVGRDQLAPALR----AHPQVLS 124

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +   DA  +  E   + +  + +      ++   L                +    Q EV
Sbjct: 125 LEGTDARNLTRELIEDAAPGLLVCDASFISLEKVLARPLELLGEGGEMI--VLFKPQFEV 182

Query: 159 GERITAQKN 167
           G +   +  
Sbjct: 183 GPKFVGKGG 191


>gi|237748392|ref|ZP_04578872.1| methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229379754|gb|EEO29845.1| methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 222

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           ++    +G ++++IG G G  T+ L  L    +  ++ D  +    +   S         
Sbjct: 37  DALKPAEGDSILDIGCGTGWFTRQLGKLTGICLTGVDIDTNWLAYAQSRDSAS----RYC 92

Query: 101 QDDALKVDFEK 111
           Q DAL + FE 
Sbjct: 93  QADALSLPFED 103


>gi|322389699|ref|ZP_08063246.1| methyltransferase domain protein [Streptococcus parasanguinis ATCC
           903]
 gi|321143538|gb|EFX38969.1| methyltransferase domain protein [Streptococcus parasanguinis ATCC
           903]
          Length = 197

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 18/144 (12%)

Query: 25  MGQ--NFLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ  NF  D  +  KK+ +        +    +G +V+++G G G +   L       V
Sbjct: 24  LGQKMNFYTDAGVFSKKMIDYGSQVLLSTLDFQEGESVLDVGCGYGPIGLSLAKAQGVAV 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +++   + K  +S++    +I   D  +   E  F+      +I+N P   G R+
Sbjct: 84  TMVDVNERALDLAKKNASRNGVEAQIFSSDVYEA-VEGVFD-----HVISNPPIRAGKRV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK 156
           +   I+           LT++ QK
Sbjct: 138 VHQVITGSFEHLKPGGDLTIVIQK 161


>gi|294146744|ref|YP_003559410.1| precorrin-6Y C5,15-methyltransferase [Sphingobium japonicum UT26S]
 gi|292677161|dbj|BAI98678.1| precorrin-6Y C5,15-methyltransferase [Sphingobium japonicum UT26S]
          Length = 402

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 27/134 (20%)

Query: 31  LDLNILKKIAESS-----GSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFP 84
            D  I K+ A +          G T+ +IGAG G++  + LL  G+ + I  E D     
Sbjct: 231 HDGQITKRPARALTLSALAPRPGETLWDIGAGCGSVAIEWLLAHGSTQAIAFEVDPDRAG 290

Query: 85  ILKDISSQHP-NRLEIIQD---DALKVDFEK-----------------FFNISSPIRIIA 123
             +  +     +RL +++    D L                       F     P R++A
Sbjct: 291 RTRANALHLGVDRLTVMEGRAPDILTGRTRPEAVFIGGGLSQSLLAALFALPGGPTRLVA 350

Query: 124 NLPYNIGTRLLFNW 137
           N        LL  W
Sbjct: 351 NAVTLESEALLARW 364


>gi|229494468|ref|ZP_04388231.1| methyltransferase type 12 [Rhodococcus erythropolis SK121]
 gi|229318830|gb|EEN84688.1| methyltransferase type 12 [Rhodococcus erythropolis SK121]
          Length = 250

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           TV+++  GPG+L+  +L       V+ I+ D     + +  S++  +RL++I  D    D
Sbjct: 44  TVVDLACGPGSLSARILEKFEHASVVGIDYDPMLLELARQSSTRFGDRLQLIDADLAGAD 103

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +            +A     I +    +W+        +   
Sbjct: 104 WPN---------SVAAPVQAIVSTTALHWLQPQQLVEVYRQC 136


>gi|254524092|ref|ZP_05136147.1| methyltransferase type 11 [Stenotrophomonas sp. SKA14]
 gi|219721683|gb|EED40208.1| methyltransferase type 11 [Stenotrophomonas sp. SKA14]
          Length = 357

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 8/135 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +G  DG  ++E+G G G+LT  +      AR   V   + Q   IL   +S+  + +E++
Sbjct: 126 AGLADGQHILELGCGWGSLTLWMAERYPLARITAVSNSNSQRQHILAQCASRGLHNVEVL 185

Query: 101 QDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
             D   L++   +F    S         Y      +  W+     P     + +   + +
Sbjct: 186 TRDVNQLELPPAQFDRCVSVEMFEHVRNYQRLLARIAQWLK----PDGALFVHIFAHRTL 241

Query: 159 GERITAQKNSPHYGR 173
                        GR
Sbjct: 242 MYPFETDGGDNWMGR 256


>gi|167946408|ref|ZP_02533482.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
 gi|110589162|gb|ABG77090.1| protein-L-isoaspartate-O-methyltransferase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 179

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I  K  +S        V E+G G G LT  L  L AR+V+ I+    F         +
Sbjct: 23  PRIEGKALQSLDIQPSDLVYEVGTGSGFLTACLAKL-ARQVVSIDIHPDFTEQAAARLDE 81

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              + + +   +AL+            I +  ++P +    +  + + 
Sbjct: 82  MGIHNVSLSTGNALQT--PSIKGPFDAILVSGSVPTSEQAEIFRSQLK 127


>gi|94970328|ref|YP_592376.1| methyltransferase type 11 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94552378|gb|ABF42302.1| Methyltransferase type 11 [Candidatus Koribacter versatilis
           Ellin345]
          Length = 225

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 6/134 (4%)

Query: 25  MGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           + Q FL D  I+ +I   +G   L  + ++E+G G G   +  +  GA    V+  D   
Sbjct: 24  LTQGFLRDYQIV-RILRGAGIGSLANLDILEVGCGSGYFLRQFVQWGADPSRVVGVDL-L 81

Query: 83  FPILKDISSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              ++      P   ++I  DA  L  D   F  +     + +     I   +    +  
Sbjct: 82  PERVEAARQNCPIGTKVICCDARQLPFDTASFDVVMQFTALSSVADDGIRKAIADEMMRV 141

Query: 141 DTWPPFWESLTLLF 154
                   S  +  
Sbjct: 142 VRPGGVVLSYDMCV 155


>gi|24646718|ref|NP_650322.1| arginine methyltransferase 6 [Drosophila melanogaster]
 gi|7299824|gb|AAF55002.1| arginine methyltransferase 6 [Drosophila melanogaster]
 gi|66770921|gb|AAY54772.1| IP11481p [Drosophila melanogaster]
 gi|220951690|gb|ACL88388.1| Art6-PA [synthetic construct]
          Length = 341

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 28  NFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           N L D          I +  G      V+++G G G L+      GA KVI +E      
Sbjct: 31  NMLRDSVRMQAFRDAIVQDGGLFQDKIVLDVGCGTGILSLFAAEAGASKVIAVEC-TDIA 89

Query: 84  PILKDIS--SQHPNRLEIIQD 102
            I ++I   +Q  N +++++ 
Sbjct: 90  DIAEEIIRDNQKENVVKVVKG 110


>gi|323360036|ref|YP_004226432.1| tRNA(1-methyladenosine) methyltransferase [Microbacterium testaceum
           StLB037]
 gi|323276407|dbj|BAJ76552.1| tRNA(1-methyladenosine) methyltransferase [Microbacterium testaceum
           StLB037]
          Length = 341

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I  ++    G TV+E G G G L+  LL     A +++  E+ ++F  +    ++  
Sbjct: 92  AAQILSAADIFPGATVVEAGVGSGALSLWLLRAIGPAGRLVSFERREEFADVARANVETF 151

Query: 90  SSQHPNRLEIIQDD 103
               P   +++  D
Sbjct: 152 LGGTPATWDVVVGD 165


>gi|331674118|ref|ZP_08374879.1| conserved hypothetical protein [Escherichia coli TA280]
 gi|331068760|gb|EGI40154.1| conserved hypothetical protein [Escherichia coli TA280]
          Length = 187

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L +      N + +   D ++    ++++     R+I N P++ G  +
Sbjct: 89  YLGENF----NGVRVQCGDFMEWQPVQYYS-----RVIMNPPFSHGQDI 128


>gi|325000459|ref|ZP_08121571.1| methyltransferase type 12 [Pseudonocardia sp. P1]
          Length = 187

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 17/88 (19%)

Query: 29  FLLDL----------NILKKIAESSGSLDGITVI-EIGAGPGNLTQMLLTL--GARKVIV 75
           FL D             L  +A +     G  V+ E+G G G  T ++     G    + 
Sbjct: 2   FLRDPVRTASCLPSSRTLAAVATAPVPETGDPVVVELGPGTGAFTGVIAERLGGRGHHLA 61

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDD 103
           +E +     +L+         ++++  D
Sbjct: 62  VELNPTLAGLLERRYPG----VDVVVGD 85


>gi|254719470|ref|ZP_05181281.1| S-adenosyl-methyltransferase MraW [Brucella sp. 83/13]
 gi|265984477|ref|ZP_06097212.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. 83/13]
 gi|306839249|ref|ZP_07472066.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653]
 gi|264663069|gb|EEZ33330.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. 83/13]
 gi|306405796|gb|EFM62058.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653]
          Length = 346

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++     G  +++   G G  T+ +L  GA  VI I++D       + +  +
Sbjct: 20  PVLIAEMIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDRDPTAIEAGRAMEKE 78

Query: 93  HPNRLEIIQDDALKVD 108
            P RL +++     +D
Sbjct: 79  FPGRLNLVESRFSALD 94


>gi|229162413|ref|ZP_04290376.1| Methyltransferase type 11 [Bacillus cereus R309803]
 gi|228621097|gb|EEK77960.1| Methyltransferase type 11 [Bacillus cereus R309803]
          Length = 239

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++ E         V+EIG G G     +      KV  +EK++      KD      
Sbjct: 25  LTKQLLEQLPLRHEANVLEIGCGTGKTAAYMTKRFGYKVTAVEKNEIMIQKAKDRWMFEG 84

Query: 95  NRLEIIQDDA 104
             +++IQ DA
Sbjct: 85  LNIQLIQGDA 94


>gi|323974709|gb|EGB69824.1| hypothetical protein ERFG_04487 [Escherichia coli TW10509]
          Length = 187

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVTLAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVESNSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++ +     RII N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYHS-----RIIMNPPFSHGQDI 128


>gi|225412360|ref|ZP_03761549.1| hypothetical protein CLOSTASPAR_05582 [Clostridium asparagiforme
          DSM 15981]
 gi|225042153|gb|EEG52399.1| hypothetical protein CLOSTASPAR_05582 [Clostridium asparagiforme
          DSM 15981]
          Length = 1298

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
             V+EIG+G G LT +L    A   ++ E D+  
Sbjct: 54 TEQVLEIGSGYGALTGLLAKRAAHVTVLDESDENL 88


>gi|315230482|ref|YP_004070918.1| methyltransferase [Thermococcus barophilus MP]
 gi|315183510|gb|ADT83695.1| methyltransferase [Thermococcus barophilus MP]
          Length = 250

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +++I ++    +   V+++  G G  T  L   G  +V+ ++  ++   + +  + +   
Sbjct: 30  VEEIFKNDAKREVKKVLDLACGTGIPTVELARRG-YEVVGLDLHEEMLRVARRKAQELGL 88

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            +E I  DAL ++FE  F+  +              + LFN
Sbjct: 89  NIEFIHGDALDINFENEFDAVTMFFSSIMYFDENAIKQLFN 129


>gi|332297284|ref|YP_004439206.1| Methyltransferase type 11 [Treponema brennaborense DSM 12168]
 gi|332180387|gb|AEE16075.1| Methyltransferase type 11 [Treponema brennaborense DSM 12168]
          Length = 250

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 7/160 (4%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q++     I +KI   +G   G T+++ G GPG ++  L   G   V  ++  + +    
Sbjct: 24  QHWAEAPGIAEKICAIAGLGKGSTILDAGCGPGRISVELALRG-LDVTGVDNIKPYLDAA 82

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR-LLFNWISADTWPP 145
           ++ +      L ++Q D       + F+ +  +        +I    L+   I+      
Sbjct: 83  RESAEDEGVSLNLVQSDLRTYVSSQPFDAAVNLYTSFGYCSSIEEDMLILKNIAQSVKSG 142

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGR-----LSVLTGW 180
            W  +  L ++      TA +     G+      SV   W
Sbjct: 143 GWFVMECLSRENAVRDFTAGEWFERAGKTVLTEFSVEGAW 182


>gi|269792718|ref|YP_003317622.1| hypothetical protein Taci_1108 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100353|gb|ACZ19340.1| Protein of unknown function methylase putative [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 169

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
               +L+ +    G L+G+  +++ AG G ++    + GAR V  +E D++    ++ + 
Sbjct: 16  TSGKVLQALFNILGPLEGVDFLDLFAGSGRVSVEAASRGAR-VTAVEVDRRCCEAMRTL- 73

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT-RLLFNWISADT 142
                   ++Q D  +          S   + A+ PY +G    L   +  + 
Sbjct: 74  ----GGFRVVQGDVRRFIPRAAREGDSYGVVFADPPYCMGWVEELLELLRGNR 122


>gi|229494362|ref|ZP_04388125.1| tRNA (guanine-N(7)-)-methyltransferase [Rhodococcus erythropolis
           SK121]
 gi|229318724|gb|EEN84582.1| tRNA (guanine-N(7)-)-methyltransferase [Rhodococcus erythropolis
           SK121]
          Length = 218

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
            +   +IEIG+G G  T  +        +I IE        +L+ +  +    + +++ D
Sbjct: 43  REAPLIIEIGSGTGTATAAMAKAEPHVNLIAIEVYRPGLAQLLQQVEREEIPNVRVLRGD 102

Query: 104 ALKV 107
           A+ V
Sbjct: 103 AMDV 106


>gi|118577088|ref|YP_876831.1| precorrin-6B methylase [Cenarchaeum symbiosum A]
 gi|118195609|gb|ABK78527.1| precorrin-6B methylase [Cenarchaeum symbiosum A]
          Length = 198

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLT-QMLLTLGA-RKVIVIEKDQQFFPILKDISSQHP-NR 96
              S    G TV +IG G G+ T +  L +GA   +  I+ D +   + +   ++     
Sbjct: 32  ISKSRLRPGDTVHDIGCGSGSFTVEAALQVGASGSIHAIDSDPRAIELTRRNLARFGVEN 91

Query: 97  LEIIQDDA 104
             +I  DA
Sbjct: 92  ATVILGDA 99


>gi|331693969|ref|YP_004330208.1| type 12 methyltransferase [Pseudonocardia dioxanivorans CB1190]
 gi|326948658|gb|AEA22355.1| Methyltransferase type 12 [Pseudonocardia dioxanivorans CB1190]
          Length = 251

 Score = 41.7 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH 93
           ++  + E         ++++G GPG+L   LL      +V+ I+ D      L D++   
Sbjct: 31  VIADVVEEVVRRPDPLIVDLGTGPGSLAVRLLERLPGARVVGIDADP-LLRGLADLAHG- 88

Query: 94  PNRLEIIQDDALK-VDFEKFFNISSPIRIIANL 125
            +RL  +  D  +   F       +P   ++  
Sbjct: 89  SDRLRTVAGDLREDTWFAALGLDRAPDAFVSTT 121


>gi|307710912|ref|ZP_07647338.1| methyltransferase domain protein [Streptococcus mitis SK321]
 gi|307617268|gb|EFN96442.1| methyltransferase domain protein [Streptococcus mitis SK321]
          Length = 195

 Score = 41.7 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 63/162 (38%), Gaps = 4/162 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL +L + + + +    L    +++ G G G LT  L    A+ V +++  ++     + 
Sbjct: 19  FLANL-VCQAVKKQIDLLSDKEILDFGGGTGLLTLPLAKQ-AKSVTLVDISEKMLEQARL 76

Query: 89  ISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPY-NIGTRLLFNWISADTWPPF 146
            + Q     ++ ++ D L+   E+ F++    R++ ++P  +    L    +  +     
Sbjct: 77  KAEQQDIMNIKFLEQDLLEKPLEQEFDLIVVCRVLHHMPDLDAAISLFHQHLRENGQLLL 136

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
            +           E +  +     +G  SV +     A  +F
Sbjct: 137 ADFTKTEANHHGFELVELENRLAQFGFSSVHSQILYSAEDLF 178


>gi|307166550|gb|EFN60617.1| UPF0431 protein C1orf66-like protein [Camponotus floridanus]
          Length = 496

 Score = 41.7 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 2   TMNNKSHSLKTILSHYK------IIPKKYMGQNFLLDLNILKKI-AESSGSLDGITVIEI 54
             N +SH +   L  +       +  KK        ++  + +I A+ +       +++I
Sbjct: 125 NKNERSHEIHVALKKHNNLFLKHVKKKKRY------EIQQIAQICADCAQESKTRCIVDI 178

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           GAG G+L + L       VI IE+D + 
Sbjct: 179 GAGMGHLARSLAFKHGLCVICIEQDTEL 206


>gi|310643068|ref|YP_003947826.1| ribosomal protein l11 methyltransferase [Paenibacillus polymyxa
           SC2]
 gi|309248018|gb|ADO57585.1| Ribosomal protein L11 methyltransferase [Paenibacillus polymyxa
           SC2]
          Length = 321

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G  VI++G G G L    + LGA+ V+ ++ D       ++    +    R+ I + 
Sbjct: 173 IQGGEEVIDVGTGSGILAIGAIKLGAKHVLALDLDPVAVSSARENTRLNGLEERITIKES 232

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           D L V       +   + +   +   +   +L 
Sbjct: 233 DLLSVLNASDPTLGIQLPVKLVVANILAEIILL 265


>gi|309774597|ref|ZP_07669622.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917628|gb|EFP63343.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 341

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 29  FLLD-LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           F +D   +L + A  +    G TV++IG G GNLT+ LL  G   + V+  DQ    +L 
Sbjct: 160 FYVDYERVLDETARIAA-KRGSTVLDIGCGTGNLTERLLLKG---LQVVGVDQSL-EMLV 214

Query: 88  DISSQHPNRLEIIQDDALKVDFEK 111
               + P+ L + Q   L + FEK
Sbjct: 215 QAKKKLPSVL-LHQGTFLALPFEK 237


>gi|307316908|ref|ZP_07596350.1| protein-L-isoaspartate O-methyltransferase [Sinorhizobium meliloti
           AK83]
 gi|306897530|gb|EFN28274.1| protein-L-isoaspartate O-methyltransferase [Sinorhizobium meliloti
           AK83]
          Length = 658

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G TV+EIG G G     +L+  A  V  IE+      + +   ++
Sbjct: 64  PYIVALMIERAEVQPGDTVLEIGTGSGY-AAAVLSRIAAYVYTIERHAGLAEVAERRFAE 122

Query: 93  H-PNRLEIIQDD 103
                +++   D
Sbjct: 123 LRYGNIDVRVGD 134


>gi|302830794|ref|XP_002946963.1| hypothetical protein VOLCADRAFT_56214 [Volvox carteri f.
           nagariensis]
 gi|300268007|gb|EFJ52189.1| hypothetical protein VOLCADRAFT_56214 [Volvox carteri f.
           nagariensis]
          Length = 331

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNR 96
           I  ++       V++IG G G L+      GA+ V  IE         K I     + +R
Sbjct: 40  IMNNAFLFKDKIVLDIGCGTGILSLFSAKAGAKHVYGIEC-STIAEQAKQIVKDNNYEDR 98

Query: 97  LEIIQD 102
           + II+ 
Sbjct: 99  VTIIKG 104


>gi|294494828|ref|YP_003541321.1| methyltransferase type 11 [Methanohalophilus mahii DSM 5219]
 gi|292665827|gb|ADE35676.1| Methyltransferase type 11 [Methanohalophilus mahii DSM 5219]
          Length = 278

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 29/170 (17%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           L+K  +         +++IGAGPG++   L       V  +E       +LK+  + +  
Sbjct: 52  LEKALQDIKHDSDSRILDIGAGPGSMAIPLAQR-VSHVTAVEPADGMTEVLKENIADYNL 110

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           + +  IQ +   V  E+   +   I       Y++    +   +                
Sbjct: 111 DNVTCIQKNWEDVAVEELDGMYDVIIAS----YSLHVPDIREALEKIQQVSNGR------ 160

Query: 155 QKEVGERITAQK--NSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
              V     A       +Y R  +                  ++PSPK  
Sbjct: 161 ---VYIYWFAGPTSWDKNYSR--IWPQLHG----------RQYYPSPKCD 195


>gi|329765478|ref|ZP_08257054.1| Protein-L-isoaspartate carboxylmethyltransferase [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137916|gb|EGG42176.1| Protein-L-isoaspartate carboxylmethyltransferase [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 219

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++ E     +G  ++EIG+G G  T +L  L G   V  IE+       L + + 
Sbjct: 67  PSVVSRMTEWLDVKEGQKILEIGSGSGWQTAILAYLVGHGTVYSIER----HRELAEFAK 122

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRII------ANLPYNIGTRLLFNWISADTWPP 145
           ++ ++L I     +  D    F   SP   I        +P ++  +L  N +       
Sbjct: 123 KNLDKLGIHNAKVISGDGSFGFPEESPFDRIIITAACKKIPDSLLEQLSINGLLIAPVGG 182

Query: 146 FWESLTLL 153
           + +S+ LL
Sbjct: 183 YPQSMILL 190


>gi|221632271|ref|YP_002521492.1| putative S-adenosylmethionine (SAM)-dependent methyltransferase
           [Thermomicrobium roseum DSM 5159]
 gi|221155603|gb|ACM04730.1| putative S-adenosylmethionine (SAM)-dependent methyltransferase
           [Thermomicrobium roseum DSM 5159]
          Length = 269

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEII 100
           +     G  ++EIG G G L   L   G   V  +++        ++   ++    +++ 
Sbjct: 31  AFAQRTGDPILEIGCGTGRLLAPLARSG-YTVHGVDRSPAMLARARERLRAEGLEHVQLF 89

Query: 101 QDDALKVDFEKFFNISSPIRIIA 123
           Q DA  VD     +    + IIA
Sbjct: 90  QADA--VDLRPLADGFYRLAIIA 110


>gi|163854794|ref|YP_001629092.1| putative protein-L-isoaspartate O-methyltransferase [Bordetella
           petrii DSM 12804]
 gi|163258522|emb|CAP40821.1| putative protein-L-isoaspartate O-methyltransferase [Bordetella
           petrii]
          Length = 226

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             +  ++A+         V+EIG G G     LL   A++V  +E D +     +    
Sbjct: 74  PKVEARLAQELQLTPTDCVLEIGTGSGY-QAALLAHLAQQVTSVEIDNRLVAFAQQNLQ 131


>gi|150399288|ref|YP_001323055.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus
           vannielii SB]
 gi|166225723|sp|A6UPM1|CBIT_METVS RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|150011991|gb|ABR54443.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus vannielii SB]
          Length = 180

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 36  LKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISSQH 93
           ++ I  E         +++IG G G +T  +     + V  ++  +      LK++   +
Sbjct: 20  IRAISVEKLNICPEDIILDIGCGSGGMTVEISKRC-KFVYAVDGSKDAIDTTLKNMDKFN 78

Query: 94  PNRLEIIQDDA 104
               E+   DA
Sbjct: 79  VKNCEVYFGDA 89


>gi|117921771|ref|YP_870963.1| methyltransferase small [Shewanella sp. ANA-3]
 gi|262828713|sp|A0L0I8|TRMN6_SHESA RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|117614103|gb|ABK49557.1| methyltransferase small [Shewanella sp. ANA-3]
          Length = 241

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +       +++IGAG G L+ M       ++  +E +++     +   +Q P  +R ++I
Sbjct: 30  APLSRAKHILDIGAGSGLLSLMAAQRSQGQITAVELEEKAAAACQYNMTQSPWADRCKLI 89

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
             D   V  +  +       II N PY
Sbjct: 90  HGDIQHVCQQAEYQEYF-DHIICNPPY 115


>gi|325002754|ref|ZP_08123866.1| protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Pseudonocardia sp. P1]
          Length = 379

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 38  KIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++ E     +G  V+EIG G G    L   +  +GA +V  +E       I ++  +   
Sbjct: 104 RMLELLDVTEGDRVLEIGTGTGWNAALLSSV--VGAARVTTVELQPDLASIARERLAAIG 161

Query: 95  NRLEII 100
               ++
Sbjct: 162 LHPTVV 167


>gi|227875296|ref|ZP_03993438.1| methyltransferase (methylase) [Mobiluncus mulieris ATCC 35243]
 gi|227844201|gb|EEJ54368.1| methyltransferase (methylase) [Mobiluncus mulieris ATCC 35243]
          Length = 187

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 31  LDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
               + + I    +S G + G  V++I AG G L    L+ GA   ++++  +    +L+
Sbjct: 24  TSERVREAIFSRLDSQGVIAGARVLDIFAGSGALGLEALSRGATDAMLVDSARGAVQVLR 83

Query: 88  DISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             ++      R++++  DA++       N    +  I   PY + + +L   +S+
Sbjct: 84  ANAAALSAGERVQVVGADAVRFAASLGANERFDLVFID-PPYTLDSGILDQVLSS 137


>gi|257389223|ref|YP_003178996.1| methyltransferase small [Halomicrobium mukohataei DSM 12286]
 gi|257171530|gb|ACV49289.1| methyltransferase small [Halomicrobium mukohataei DSM 12286]
          Length = 244

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRL 97
              +G   G  V++ G G G L   L  +G   V   E+D +F  + ++    +   +R+
Sbjct: 79  VGKTGLQSGDRVLDAGTGTGVLAAYLARMGV-TVTTYERDPEFADVARENMAMAGVEDRV 137

Query: 98  EIIQDDA 104
           ++   D 
Sbjct: 138 DVRSGDV 144


>gi|169831309|ref|YP_001717291.1| type 11 methyltransferase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638153|gb|ACA59659.1| Methyltransferase type 11 [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 215

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L +I   SG   G  V+++G G G L   LL     +  V   D     + +  +     
Sbjct: 25  LAEIVAGSGLRKGAHVLDVGCGTGLLVPFLLERAGERGTVTGVDFAAAMVQRAGAKAFGP 84

Query: 96  RLEIIQDDALKVDFEK 111
            +  ++ D   + FE 
Sbjct: 85  NVRFVEADVAALPFEP 100


>gi|120435320|ref|YP_861006.1| SAM-dependent methyltransferase [Gramella forsetii KT0803]
 gi|117577470|emb|CAL65939.1| SAM-dependent methyltransferase [Gramella forsetii KT0803]
          Length = 204

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +S G     ++++IG G   L   LL L    V V++  +      +    +   +++
Sbjct: 33  IIQSLGLSKKASIVDIGGGNSYLVDHLLELDYENVSVLDISETAIETAQSRLGEKSRKVQ 92

Query: 99  IIQDDALKVDFEKFFNI 115
            I  D  K DFE+ F +
Sbjct: 93  WISSDVTKHDFEQSFEV 109


>gi|82777174|ref|YP_403523.1| site-specific DNA-methyltransferase [Shigella dysenteriae Sd197]
 gi|309788319|ref|ZP_07682923.1| modification methylase BsuBI [Shigella dysenteriae 1617]
 gi|81241322|gb|ABB62032.1| site-specific DNA-methyltransferase [Shigella dysenteriae Sd197]
 gi|308923701|gb|EFP69204.1| modification methylase BsuBI [Shigella dysenteriae 1617]
          Length = 489

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 21  PKKY---MGQNFLLDLNILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTL------- 68
            +K+    GQ F+    + + +A            +++ GAG G L+   L         
Sbjct: 20  ARKHKAEFGQ-FMTPSGVARFMASLFPPSTMKTCRLLDAGAGVGALSCAFLDRWLVGEFG 78

Query: 69  -GARKVIVIEKDQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANL 125
             + +    E D++    L    + +  R+   II+ D +++   +          I N 
Sbjct: 79  FESVEATAYEIDKKLCGHLAKHLTGY-RRVTPRIIEGDYIELATAEGLQYRGYTHAILNP 137

Query: 126 PY 127
           PY
Sbjct: 138 PY 139


>gi|329893827|ref|ZP_08269898.1| methyltransferase [gamma proteobacterium IMCC3088]
 gi|328923426|gb|EGG30741.1| methyltransferase [gamma proteobacterium IMCC3088]
          Length = 275

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
              V+++G G G  T  L   GA +V  ++  +      K+ ++ + N +E+I  DA   
Sbjct: 47  EERVLDVGCGCGATTLALAQSGA-QVTGVDLSEPMINRAKERAAGYDN-IELIVKDACVY 104

Query: 108 DFEKFFNI 115
           D    F++
Sbjct: 105 DTMHQFDL 112


>gi|299144281|ref|ZP_07037361.1| methyltransferase domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518766|gb|EFI42505.1| methyltransferase domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 264

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ------QFFP 84
           +   I++ IAE     DG   +++G G G LT           + +  D+       +  
Sbjct: 80  MSKQIIEGIAEYVTIPDGGKGLDVGCGSGALTIACAKRNLNSKM-VGLDRWGKEYKNYSR 138

Query: 85  IL--KDISSQHPNRLEIIQDDALKVDFEK 111
            L  K+  ++  N +E ++ DALK+DF  
Sbjct: 139 ALCRKNAEAEGINNVEFVKGDALKLDFPD 167


>gi|294901177|ref|XP_002777273.1| 3-demethylubiquinone-9 3-methyltransferase, putative [Perkinsus
           marinus ATCC 50983]
 gi|239884804|gb|EER09089.1| 3-demethylubiquinone-9 3-methyltransferase, putative [Perkinsus
           marinus ATCC 50983]
          Length = 313

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
            ++  + G   G+ V+++G G G   + +       V+  +  ++   + K+I+      
Sbjct: 47  DEVIATLGLGPGMKVLDVGCGVGGPARYISYKSGCSVVGYDVQEELIEVGKEITEAVGLS 106

Query: 95  NRLEIIQDDALK----VDFEKFFNISSPIRIIANLPYNIG 130
           N+++++  DA K     +  + F+ +  + +I ++P  I 
Sbjct: 107 NKVDLVCGDAAKDMYASENREKFDSAFSLLVILHIPDRIA 146


>gi|271968051|ref|YP_003342247.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Streptosporangium roseum DSM 43021]
 gi|270511226|gb|ACZ89504.1| Protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Streptosporangium roseum DSM 43021]
          Length = 390

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 41  ESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNR 96
           +  G   G  V+EIG+G G    L   L+     +V+ ++ D       +D   +     
Sbjct: 76  DQLGVEPGQRVLEIGSGTGYNAALLSRLVG-PEGQVVSVDIDADLVARARDHLERAGYPE 134

Query: 97  LEIIQDD 103
           + ++  D
Sbjct: 135 VIVVCGD 141


>gi|229098848|ref|ZP_04229784.1| Dimethyladenosine transferase [Bacillus cereus Rock3-29]
 gi|228684521|gb|EEL38463.1| Dimethyladenosine transferase [Bacillus cereus Rock3-29]
          Length = 258

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 81  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 136

Query: 97  LEIIQDDALKVDFE 110
             I + D L  +  
Sbjct: 137 FSITEGDFLSFEVP 150


>gi|313675860|ref|YP_004053856.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312942558|gb|ADR21748.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 412

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLL---DLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           ++++  +S+Y++  KK   Q FL    D NI  +++      +   V+E+ AG G L   
Sbjct: 31  NAVREPVSNYRVY-KKSDVQTFLKPLFDNNIEDEVSNFEKPDNEYAVLELFAGAGGLAVG 89

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI 115
           L   G +   + E D+     L++          +++ D    DF++  N 
Sbjct: 90  LEKAGLKCQALNEIDKWACQTLRNNRPHW----NVLEGDIKDFDFKELENQ 136


>gi|310644285|ref|YP_003949044.1| ribosomal RNA adenine dimethylase; phospholipid n-methyltransferase
           [Paenibacillus polymyxa SC2]
 gi|309249236|gb|ADO58803.1| Ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase
           [Paenibacillus polymyxa SC2]
          Length = 200

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 5   NKSHSLKTILSHYK----IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           N  H ++  + H +    +IP             + K+IA          +IE GAG G 
Sbjct: 17  NAIHFIREYIRHPRSVGAVIPS---------SRQLAKQIATPIYFDKASCIIEYGAGTGV 67

Query: 61  LTQMLL--TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISS 117
            TQ L+        ++VIE ++ F+  L+     H  R+ II   A  V  + K +++S 
Sbjct: 68  FTQELILNKRPETLLLVIEANESFYKTLQSKY-GHLERVHIIHGSAEHVARYMKQYHVSK 126

Query: 118 PIRIIANLPYNIGTRLLFNWI 138
              I++ LP+      L + I
Sbjct: 127 VDYIVSGLPFTSLPAALSSLI 147


>gi|72391756|ref|XP_846172.1| arginine N-methyltransferase [Trypanosoma brucei TREU927]
 gi|74832602|sp|Q582G4|ANM7_TRYBB RecName: Full=Protein arginine N-methyltransferase 7; Short=TbPRMT7
 gi|62358403|gb|AAX78867.1| arginine N-methyltransferase, putative [Trypanosoma brucei]
 gi|70802708|gb|AAZ12613.1| arginine N-methyltransferase, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 390

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
                  V+EIGAG G L+ M   LGA+ V+ +E  ++   + ++   ++   ++++++ 
Sbjct: 92  HVTPETGVLEIGAGSGLLSLMAAKLGAKWVVAVEGSEELAKLARENIRANNMEHQVKVLH 151

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNI 129
              +  + +       P  +++ +   +
Sbjct: 152 M--MSTELKSKHLPEPPDVLLSEIFGTM 177


>gi|307329035|ref|ZP_07608202.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
 gi|306885230|gb|EFN16249.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
          Length = 362

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           + ++  +    DG  V+EIG G G    L    L  G   V  +E D            +
Sbjct: 94  VARMLTALEVADGQRVLEIGTGSGWNAALLAARLGSG--NVTTVEVDPVLAEKAAKAIKE 151

Query: 93  HPNRLEIIQDD 103
                +++  D
Sbjct: 152 AGYSPDVVWGD 162


>gi|229580634|ref|YP_002839034.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sulfolobus
           islandicus Y.G.57.14]
 gi|228011350|gb|ACP47112.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sulfolobus
           islandicus Y.G.57.14]
          Length = 236

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 19/91 (20%)

Query: 32  DLNILKK------------------IAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARK 72
           D N + K                  I +     +   V+EIG G G  T ++   +G   
Sbjct: 39  DPNYIDKPFYVTPNITTTALSLGIYILDILNLEENQKVLEIGTGIGYYTALIAEVVGENN 98

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           ++ IE D   F   K++       +++++ D
Sbjct: 99  IVSIEIDDTMFEYAKNVLLIRYPLIKLLKTD 129


>gi|221502950|gb|EEE28660.1| protein arginine N-methyltransferase, putative [Toxoplasma gondii
           VEG]
          Length = 392

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-- 94
           + I +++       V+++G+G G L+      GA+ V  IE   +   I + I  ++   
Sbjct: 97  RAICQNAHLFANKVVLDVGSGTGILSLFAAKAGAKHVYGIEC-SEIVNIARKIVKENDME 155

Query: 95  NRLEIIQDDA 104
           +++  +Q  A
Sbjct: 156 DKVTFVQGKA 165


>gi|163856860|ref|YP_001631158.1| protein-L-isoaspartate O-methyltransferase [Bordetella petrii DSM
           12804]
 gi|209573162|sp|A9IP04|PIMT_BORPD RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|163260588|emb|CAP42890.1| protein-L-isoaspartate O-methyltransferase [Bordetella petrii]
          Length = 271

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQ 92
           + + IA +    +   V+E+GAG G     +L    R+V  IE+ +  F + +    + +
Sbjct: 124 VARMIAAACEDRNPTRVLEVGAGCGY-QAAVLAQFVREVHAIERIRGLFELARGHLRALR 182

Query: 93  HPNRLEIIQDDAL 105
              R+ +I  D +
Sbjct: 183 LATRVRLIHGDGM 195


>gi|237842817|ref|XP_002370706.1| arginine N-methyltransferase 1 [Toxoplasma gondii ME49]
 gi|60459132|gb|AAX19953.1| protein arginine methyltransferase [Toxoplasma gondii]
 gi|211968370|gb|EEB03566.1| arginine N-methyltransferase 1 [Toxoplasma gondii ME49]
 gi|221485678|gb|EEE23959.1| protein arginine N-methyltransferase, putative [Toxoplasma gondii
           GT1]
          Length = 392

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-- 94
           + I +++       V+++G+G G L+      GA+ V  IE   +   I + I  ++   
Sbjct: 97  RAICQNAHLFANKVVLDVGSGTGILSLFAAKAGAKHVYGIEC-SEIVNIARKIVKENDME 155

Query: 95  NRLEIIQDDA 104
           +++  +Q  A
Sbjct: 156 DKVTFVQGKA 165


>gi|93006623|ref|YP_581060.1| methyltransferase type 12 [Psychrobacter cryohalolentis K5]
 gi|92394301|gb|ABE75576.1| Methyltransferase type 12 [Psychrobacter cryohalolentis K5]
          Length = 265

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 18/154 (11%)

Query: 37  KKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-- 93
           + I  +          IE+G G G L+++L     R ++ I+ +++   + K+  ++   
Sbjct: 68  RDICLAILPQSQYNNTIELGCGNGVLSELLAKRC-RALVSIDGNERAVQLAKERLAELSH 126

Query: 94  --------PNRL-----EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                   PNRL      II+   L  D       +  + +I+ + Y +    +   I+ 
Sbjct: 127 VKVIQGVVPNRLLNLKEAIIEASPLSNDTPTI-EPAFDLIVISEILYYLSPNDIDTVIAW 185

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
                      L           A      + RL
Sbjct: 186 TQQNLVIGGTLLCCHWRYAIDGFAMTGETVHQRL 219


>gi|257440326|ref|ZP_05616081.1| precorrin-6Y C5,15-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|257197172|gb|EEU95456.1| precorrin-6Y C5,15-methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 400

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 40  AESSGS-----LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILK-DISSQ 92
             ++         G T+ ++GAG G+++  L     R  V  +E D +   +++ +  + 
Sbjct: 234 VRAAALAKLAVQPGDTLWDVGAGTGSVSVELALAAPRGHVYAVECDPEACGLIRQNRETF 293

Query: 93  HPNRLEIIQD 102
           H   L +++ 
Sbjct: 294 HACNLTLVEG 303


>gi|254775066|ref|ZP_05216582.1| hypothetical protein MaviaA2_10391 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 281

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISS-- 91
             +I        G  V+E GAG G LT  LL       +VI  E+        +   S  
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPQGRVISYEQRADHAEHAQRNVSVF 147

Query: 92  ---QHPNRLEIIQDDALKVDFEK 111
              + P+  ++I DD    D   
Sbjct: 148 FGGEAPDNWQLIVDDVADSDLPD 170


>gi|86741400|ref|YP_481800.1| hypothetical protein Francci3_2710 [Frankia sp. CcI3]
 gi|86568262|gb|ABD12071.1| hypothetical protein Francci3_2710 [Frankia sp. CcI3]
          Length = 316

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 21/152 (13%)

Query: 32  DLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           D +++ +I E+        + V+E+G G G LT  L    AR+++ I+       +L   
Sbjct: 43  DGDMIAQIIEARFGAPRQALDVLELGCGTGRLTARLAPY-ARRLVAIDS---SAAMLDTF 98

Query: 90  SSQHPNRLEIIQDDA-LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            S+ P   E  + D  L V        +    ++    +++   L            F+E
Sbjct: 99  RSRFPEA-EAHEADIPLAVSRLLDDGRAGGFDLVG-AFWSLSYPL----------GEFFE 146

Query: 149 SLTLLFQKEVGERITAQ--KNSPHYGRLSVLT 178
            +T    + V ++  A+    S     LS++ 
Sbjct: 147 EMTGDGIQPVADQGAARREAGSLVRDMLSLVA 178


>gi|18311815|ref|NP_558482.1| methylase, conjectural [Pyrobaculum aerophilum str. IM2]
 gi|18159224|gb|AAL62664.1| methylase, conjectural [Pyrobaculum aerophilum str. IM2]
          Length = 204

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           V+++G G G  +     +GAR+V+ I+ D +   I K+ +      L +   D L  D  
Sbjct: 51  VLDLGCGTGRFSLAAAAMGARRVLCIDIDPEAIQIAKEAAED----LGLGAVDFLVADAT 106

Query: 111 KFFNISSPIRIIANLPYNI 129
           + +   S   +  N P+ I
Sbjct: 107 RLWLGRSFAVVFQNPPFGI 125


>gi|71022941|ref|XP_761700.1| hypothetical protein UM05553.1 [Ustilago maydis 521]
 gi|46101086|gb|EAK86319.1| hypothetical protein UM05553.1 [Ustilago maydis 521]
          Length = 598

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 49/163 (30%), Gaps = 13/163 (7%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            ++E+G G GN+   LL    R KV   +  ++   +++      P R+     D    D
Sbjct: 317 VLLEVGCGVGNMLYPLLAANPRLKVHCCDFSERAVDMVRCHPLYDPARVNAFVFDLTSCD 376

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
                 +  P     + P  I    + + I           L  L     G  +      
Sbjct: 377 PPLSSLLCKPPYSSWSAPTTISLIFVLSAIPPSFHASVLSKLRSLLLPHGGHILF---RD 433

Query: 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
             YG LS     R              +  P + ST  H+   
Sbjct: 434 YAYGDLS---QVRYHTK------KDAAWAEPSLLSTEHHWYRR 467


>gi|325269725|ref|ZP_08136336.1| ribosomal protein L11 methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324987926|gb|EGC19898.1| ribosomal protein L11 methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 288

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            L G  V++ G G G L+ +    GA++ +  + D+         ++QH   L  ++ D 
Sbjct: 149 DLKGKRVLDCGCGTGILSIVAAKCGAKEAVCYDIDEWSV-----RNAQHNAELNGVEIDV 203

Query: 105 LKVDFEKFFNISSPIRII-ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK-EVGERI 162
           L+ D     +IS    II AN+  NI    L  + S  T            Q  +   + 
Sbjct: 204 LEGDKSVLSHISGVFDIIMANINRNIILEDLEAFASVTTTDSKIILSGFYGQDADPILQK 263

Query: 163 TAQKNSPHYGRLS 175
            A+       RLS
Sbjct: 264 AAELGLKERRRLS 276


>gi|319942953|ref|ZP_08017236.1| tRNA (guanine-N(7)-)-methyltransferase [Lautropia mirabilis ATCC
           51599]
 gi|319743495|gb|EFV95899.1| tRNA (guanine-N(7)-)-methyltransferase [Lautropia mirabilis ATCC
           51599]
          Length = 249

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 26/186 (13%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPNRLEIIQD 102
                V+EIG G G+ T   +   A  +  I  D        +LK I  +  + L +I+ 
Sbjct: 71  RQAPVVLEIGFGMGD-TTAEIAANAPDIDFIAIDVHTPGVGALLKLIEQKELSNLRVIEH 129

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           DA +V  +                   G+    +    D WP        L Q      +
Sbjct: 130 DAQEVLRQMIAP---------------GSLAGIHVFFPDPWPKARHHKRRLIQTPFVHEL 174

Query: 163 TAQKNSPHYGRLSVLTGWRTK--ATMMFDISPHVFFP-SPKVTSTVIHFIPHLNPIPCCL 219
            A      Y  L+            ++ +I   V  P  P  T+++    P   P     
Sbjct: 175 VAALQPGGYLHLATDWQDYADQMEEVLAEIPALVAEPVRPFETASL----PCPRPSTRFE 230

Query: 220 ESLKKI 225
              +++
Sbjct: 231 RRGERL 236


>gi|331650740|ref|ZP_08351770.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331040415|gb|EGI12615.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 162

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    + +++   +   D   ++E  AG G + + +       +   +E +     
Sbjct: 4   SQLFVTPAPVCQRLVTLADISDQDYILEPSAGTGPILRAIRDTAPGAMCDAVEINSGLAR 63

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++      ++     RII N P++ G  +
Sbjct: 64  YLRENF----NGVRVQCGDFMEWQLAHCYS-----RIIMNPPFHRGLDI 103


>gi|240171392|ref|ZP_04750051.1| RNA methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 280

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL       +VI  E+           + + 
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPEGRVISYEQRADHAEHACRNVTNF 147

Query: 90  SSQHPNRLEIIQDDALKVDFEK 111
               P    +I  D    D   
Sbjct: 148 YGAAPQNWRLIVGDVADSDLPD 169


>gi|294948443|ref|XP_002785753.1| n6-dna-methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239899801|gb|EER17549.1| n6-dna-methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 1025

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 13/99 (13%)

Query: 43  SGSLDG-ITVIEIGAGPGNLTQMLLT------LGARKVIVIEKDQQFFPILKDISS--QH 93
           +GS  G   ++E+G G G L+  L+       + A  V  I+ +++        +     
Sbjct: 855 AGSGPGRACILEVGPGSGVLSAYLVRAMESVGVTAHSV-AIDVNRRACEATLRTAKVVGV 913

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
             ++ ++  D    +    +    P  II N PY     
Sbjct: 914 EAKVHVVLGDF---NQSPRWLRYRPDIIICNPPYVPSPP 949


>gi|261367267|ref|ZP_05980150.1| ribosomal protein L11 methyltransferase [Subdoligranulum variabile
           DSM 15176]
 gi|282570869|gb|EFB76404.1| ribosomal protein L11 methyltransferase [Subdoligranulum variabile
           DSM 15176]
          Length = 306

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
            L  I +      G  V++IG G G L    L LGA+    ++ D        + + ++ 
Sbjct: 160 TLDAIVK-----GGERVLDIGTGSGILAIAALKLGAKVAEGVDIDPMCVRTAGENAERNG 214

Query: 94  -PNRLEIIQDD 103
             +R  ++  D
Sbjct: 215 VADRFTVLVGD 225


>gi|212639006|ref|YP_002315526.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
 gi|212560486|gb|ACJ33541.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
          Length = 259

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95
           K+I          T++EIG G G LT++L     + ++  ++         K      P 
Sbjct: 38  KRIV-----HPPQTILEIGCGTGYLTKLLHDAYPKAELTAVDIAPGMIEKAKQRLGDAP- 91

Query: 96  RLEIIQDDA 104
            +  +  D 
Sbjct: 92  -ITWLCADI 99


>gi|89052648|ref|YP_508099.1| Mg-protoporphyrin IX methyl transferase [Jannaschia sp. CCS1]
 gi|88862197|gb|ABD53074.1| Mg-protoporphyrin IX methyl transferase [Jannaschia sp. CCS1]
          Length = 229

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEI 99
                L G  V++ G G G +T++L   GA +V+ I+   Q   I      +    R+  
Sbjct: 56  RLPKDLSGRRVLDAGCGTGAMTEVLAARGA-EVVAIDISPQLIDIAAKRLPEDLVPRVTF 114

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
              D L  +   F      +  + ++ Y     L           P  
Sbjct: 115 QSGDMLSANLGAF----DHVMAMDSMIYYTAPDLGRALAGLSERCPHI 158


>gi|39969513|ref|XP_366147.1| hypothetical protein MGG_10367 [Magnaporthe oryzae 70-15]
 gi|145015154|gb|EDJ99722.1| hypothetical protein MGG_10367 [Magnaporthe oryzae 70-15]
          Length = 265

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 20/111 (18%)

Query: 27  QN----FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ-- 80
           Q+    FLLD               G+ V+++G GPGNLT  +  +      V+  D   
Sbjct: 19  QHNAGLFLLDR---------LAVKPGMHVLDVGCGPGNLTAHIAEVVGPTGKVVGMDPSK 69

Query: 81  -QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +    L +  +   + L  +   A   D  +F + S  I  + +  + IG
Sbjct: 70  ERIA--LAEELAPTKSNLSFVVGQA--EDLSRFADGSFDIIYVNSTFHWIG 116


>gi|41407940|ref|NP_960776.1| hypothetical protein MAP1842c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396294|gb|AAS04159.1| hypothetical protein MAP_1842c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 281

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISS-- 91
             +I        G  V+E GAG G LT  LL       +VI  E+        +   S  
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPQGRVISYEQRADHAEHAQRNVSVF 147

Query: 92  ---QHPNRLEIIQDDALKVDFEK 111
              + P+  ++I DD    D   
Sbjct: 148 FGGEAPDNWQLIVDDVADSDLPD 170


>gi|311897398|dbj|BAJ29806.1| putative methyltransferase [Kitasatospora setae KM-6054]
          Length = 376

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 61/194 (31%), Gaps = 22/194 (11%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDIS 90
            +++  +     + DG TV++IG G G  T  LL   LG ++V  IE DQ          
Sbjct: 93  PSLVATMLRHLDAADGHTVLDIGTGTG-WTSALLSARLGEQRVTTIEVDQAMAAGATSAL 151

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES- 149
           ++       I  D L          ++P   I +            WI   T      + 
Sbjct: 152 AKAGFDPTRIIGDGLAGWLP-----NAPYDRIHSTAAVQTVP--RAWIDQTTPGGIIVTP 204

Query: 150 -LTLLFQKEVGERITAQKNSPHYGRL--SVLTGWRTKATMMFDISPHVFFPS--PKVTST 204
             T      +   +  +   P YGR   +V   W  +A         V   +  P V S 
Sbjct: 205 WGTPFANAGLLRLVIGEHGQPTYGRFVDNVTFMW-MRAQR----PHRVTDLAEIPSVLSA 259

Query: 205 VIHFIPHLNPIPCC 218
                P +      
Sbjct: 260 -SPMDPRMALEDVD 272


>gi|288560190|ref|YP_003423676.1| SAM-dependent methyltransferase [Methanobrevibacter ruminantium M1]
 gi|288542900|gb|ADC46784.1| SAM-dependent methyltransferase [Methanobrevibacter ruminantium M1]
          Length = 275

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K  GQ +L + +    + E     +  T+++IG   G +++ L    A+ +  I+K +  
Sbjct: 37  KDFGQ-WLENDDYPDVLLEEMRIDEEDTILDIGCAEGTISRKLAK-KAKSLTGIDKSKLM 94

Query: 83  FPIL-KDISSQHPNRLEIIQDDALKVDFEKFFN 114
              L K    +  + +  IQ D  ++++E+  +
Sbjct: 95  LEELNKKAEKERIDNITTIQMDINELNYEEIGD 127


>gi|197117384|ref|YP_002137811.1| protein-L-isoaspartate O-methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|197086744|gb|ACH38015.1| protein-L-isoaspartate O-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 219

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E+   L    V+EIG G G     +L+  A +V  +E+        +    +
Sbjct: 69  PYIVAYMIEALELLGRERVLEIGTGSGY-AAAVLSRCAAQVYTVERIPSLAAGARARLKE 127

Query: 93  H-PNRLEIIQDDALKVDFE 110
                + +   D  +   E
Sbjct: 128 LGYGNVTVHLGDGTRGWLE 146


>gi|58580551|ref|YP_199567.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58425145|gb|AAW74182.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 223

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPN 95
           ++ ++     G  V+E+G G G  T  L TL AR+V+ +E D       +    +    +
Sbjct: 75  RMLQALDLQPGEDVLEVGTGSGFATACLATL-AREVVSLEIDPALAAAARANLDRTGLGS 133

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            + I   D      E+ F+       +  LP
Sbjct: 134 NVRIETADVFCWQSERRFDAICVTGAVDTLP 164


>gi|290476560|ref|YP_003469465.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Xenorhabdus bovienii SS-2004]
 gi|289175898|emb|CBJ82701.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Xenorhabdus bovienii SS-2004]
          Length = 208

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ +         V+EIG G G  T +L  L AR V  +E+       L+  + +
Sbjct: 61  PYIVARMTKLLSLTPEANVLEIGTGSGYQTAILAHL-ARHVFSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D    +    P    I+   P  I   LL+  
Sbjct: 116 RLKQLDLHNISTRHGDGWNGWPSKGPFDAIIVTAAPPEIPQALLYQL 162


>gi|313125413|ref|YP_004035677.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
 gi|312291778|gb|ADQ66238.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
          Length = 194

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 47/114 (41%), Gaps = 4/114 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
           ++ G   G +V ++G+G G  T  L  L     V  I+ + +    L + +++     ++
Sbjct: 25  KTVGIDSGQSVADVGSGNGYFTLPLAELVDGEPVYAIDINDELLGELAEAAAERQCQNID 84

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
            I  DA   +  +         ++AN  + +  ++ F   + +   P  + + +
Sbjct: 85  CIHGDA--RNLPELLPEPVDTVLVANTFHGVEKQVEFARQARELLRPDGQFVVV 136


>gi|218516821|ref|ZP_03513661.1| probable SAM-dependent methyltransferase protein [Rhizobium etli
           8C-3]
          Length = 198

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
            + +G  DG  V+++G G G+LT  L    G +++  I+    F             R+ 
Sbjct: 29  IDFAGVADGERVLDVGCGTGSLTFTLAEKPGLQEITAIDYSPVFVEAAMRR--NTDPRIT 86

Query: 99  IIQDDALKVDFEK-FFNISSPIRIIANLP 126
           I Q DA  + FE   F+ +  + ++  +P
Sbjct: 87  IRQADACALPFEDNRFDRAMSLLVLHFVP 115


>gi|156549909|ref|XP_001602056.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 631

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 12/172 (6%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  I K+I      L   TV++IG G G L+      GA+KV   E       I K +  
Sbjct: 158 DQAIRKRI-----LLGYDTVLDIGTGTGLLSLYARDAGAKKVYACEYSTAMCNIAKKVFH 212

Query: 92  QH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF-NWISADTWPPFWES 149
           ++    +++I   +  +   +       + +       +   L+    I A         
Sbjct: 213 RNEAENIKLICKASNDLKIPQDMPERVKLIVTEIFDAALFGELVIPTLIDAHQNLLATNG 272

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVL---TGWRT--KATMMFDISPHVFF 196
             ++        I A ++     R SVL     +        +F +    F+
Sbjct: 273 AGIIIPMSATLYIAAVESEYIRFRSSVLFDKCQYFGSLNFENIFVLPEEDFY 324


>gi|160903330|ref|YP_001568911.1| protein-L-isoaspartate O-methyltransferase [Petrotoga mobilis SJ95]
 gi|209573207|sp|A9BH07|PIMT_PETMO RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|160360974|gb|ABX32588.1| protein-L-isoaspartate O-methyltransferase [Petrotoga mobilis SJ95]
          Length = 213

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + +     +   V+EIG G G  T +L  +  R V  IE+++      K+   +
Sbjct: 63  PYIIGLMLQLLELRENDVVLEIGTGSGYQTALLAEI-VRLVYTIERNETLAQRAKNKFEE 121

Query: 93  HPNRLEIIQ-DDALKVDFEK 111
              +  +++  D  K   ++
Sbjct: 122 LGYKNIVLEVGDGTKGWTKE 141


>gi|55583915|sp|Q7NJY2|PIMT_GLOVI RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
          Length = 205

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  ++E++    G  V+EIG G G    +L  +GA +V  +E   +     +    +
Sbjct: 54  PFIVAYMSEAARITPGAKVLEIGTGSGYQAAVLAEMGA-EVYTVEIVPELAKRAERTLEE 112

Query: 93  HPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
              R + +   D  +   +   +      ++   P  I   L+   
Sbjct: 113 LGYRSVRVRSGDGYQGWPQ---HAPFDAIVVTAAPERIPQPLIDQL 155


>gi|88798875|ref|ZP_01114457.1| hypothetical protein MED297_12492 [Reinekea sp. MED297]
 gi|88778355|gb|EAR09548.1| hypothetical protein MED297_12492 [Reinekea sp. MED297]
          Length = 202

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 13/131 (9%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G      +++IG G G LT  L      KVI ++ D+   P L+  +++  N + +    
Sbjct: 53  GLPAKSRILDIGCGWGPLTCYLAKRQNAKVISVDADEAVEPYLQLHAAE--NNVPVY--- 107

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
                      +S     IA++   IG  + F     D W    +  + +  K V     
Sbjct: 108 ---FWQNTVSGLSRDDLSIADI--VIGGDICFWDSLRDEWKTLLKRASKVGVKTV---FL 159

Query: 164 AQKNSPHYGRL 174
           A      +  L
Sbjct: 160 ADPGRSPFNEL 170


>gi|94311641|ref|YP_584851.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Cupriavidus metallidurans CH34]
 gi|93355493|gb|ABF09582.1| Protein-L-isoaspartate O-methyltransferase [Cupriavidus
           metallidurans CH34]
          Length = 217

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ +         V+EIGAG G +   LL   AR V+ ++   +   + +   + 
Sbjct: 63  PRVEARLLQDLNVRKHENVLEIGAGSGYM-AALLANRARHVLTVDVHPELVALARQNLAN 121

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
                 I   D  + +  + + +++P  +I 
Sbjct: 122 AG----ITNVDVAEGNAAEGWAVAAPYDVIC 148


>gi|269978183|ref|ZP_06185133.1| RNA methyltransferase, RsmD family [Mobiluncus mulieris 28-1]
 gi|269933692|gb|EEZ90276.1| RNA methyltransferase, RsmD family [Mobiluncus mulieris 28-1]
          Length = 187

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 31  LDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
               + + I    +S G + G  V++I AG G L    L+ GA   I+++  +    +L+
Sbjct: 24  TSERVREAIFSRLDSQGVIAGARVLDIFAGSGALGLEALSRGATDAILVDSARGAVQVLR 83

Query: 88  DISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             ++      R++++  DA++       N    +  I   PY + + +L   +S+
Sbjct: 84  ANAAALSAGERVQVVGADAVRFAASLGANERFDLVFID-PPYALDSGILDQVLSS 137


>gi|229135675|ref|ZP_04264452.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST196]
 gi|228647773|gb|EEL03831.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST196]
          Length = 192

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI--EKDQQFFPILKDISSQ 92
           + KK+ ++        ++E+G G G+ T+ ++    ++ I I  E ++ FF        +
Sbjct: 27  LAKKMVDAIDFETAKYIVELGPGTGSFTKGIMKRKKKETIFILVEINEVFFKE-LKKKFK 85

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISADTWPPF 146
             + + +I   A  +K   E+    S    +      +LP  +  R+L N + +      
Sbjct: 86  DDSSVIVIHGSAENIKKYMEELNVESIDYVLSGLPFASLPKEVSARILSNVMESLQQNGE 145

Query: 147 WESLTLLFQK 156
           + +      K
Sbjct: 146 FITFQYSLVK 155


>gi|268593258|ref|ZP_06127479.1| SAM-dependent methyltransferase [Providencia rettgeri DSM 1131]
 gi|291311154|gb|EFE51607.1| SAM-dependent methyltransferase [Providencia rettgeri DSM 1131]
          Length = 244

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +      +V++IG+G G +  ML    A   V  +E D       ++   + P  +RL +
Sbjct: 40  APVGGVQSVLDIGSGSGLIALMLAQRNAMLCVDAVELDNDAAVQAQENFIESPWADRLHV 99

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I  D   V + +  ++   + I++N PY      +           +  +LT     E  
Sbjct: 100 INQDI--VSYSQLSSVQYDL-IVSNPPYF--EPAVACRDEKRDQARYTSTLTHDVLLESA 154

Query: 160 ERITAQKN 167
           +       
Sbjct: 155 KSCLTSHG 162


>gi|167768115|ref|ZP_02440168.1| hypothetical protein CLOSS21_02670 [Clostridium sp. SS2/1]
 gi|167709639|gb|EDS20218.1| hypothetical protein CLOSS21_02670 [Clostridium sp. SS2/1]
 gi|291559966|emb|CBL38766.1| Predicted O-methyltransferase [butyrate-producing bacterium SSC/2]
          Length = 244

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           + +   +G  V+++G G G L  +L+     A  +  +E   +   +       +   ++
Sbjct: 34  DFAQVKNGGRVLDLGTGTGIL-PILMEAKTKAVHLTGLEIQPEMAEMAARSVKLNHLEDK 92

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +EI++ D  +      F+  S   I +N PY IG
Sbjct: 93  IEIVEGDIKEA--SAIFSHDSFDTITSNPPYMIG 124


>gi|160900635|ref|YP_001566217.1| methyltransferase small [Delftia acidovorans SPH-1]
 gi|160366219|gb|ABX37832.1| methyltransferase small [Delftia acidovorans SPH-1]
          Length = 403

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 12/139 (8%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVD 108
           V +IG G G L+ +LL  G R+V+  +   +     +D   +     R+ + + D     
Sbjct: 228 VWDIGTGTGVLSALLLHRGVRQVVATDLSDRALACAQDNLQRLGLAQRVSLRKAD----- 282

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
               F       ++ N P+  G     + +    +      L    +      +   +  
Sbjct: 283 ---LFPEGRAALVVCNPPWLPGKA--SSLLEQAVYDEGSRMLRGFVEGLAAHLLPGGEGW 337

Query: 169 PHYGRLSVLTGWRTKATMM 187
                L+     R++  ++
Sbjct: 338 LILSDLAEHLQLRSREELL 356


>gi|111222797|ref|YP_713591.1| putative trans-aconitate 2-methyltransferase [Frankia alni ACN14a]
 gi|111150329|emb|CAJ62026.1| putative Trans-aconitate 2-methyltransferase [Frankia alni ACN14a]
          Length = 248

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 3/121 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                TV++ G G G  T  LL L    +VI ++        L+   +   +R+E+IQ D
Sbjct: 30  LTGAETVLDAGCGTGRDTSALLDLLPDGRVIALDGSAAMLAQLRARLADRLDRVEVIQAD 89

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
            L+            +  +A   +      +F  ++A   P    +     Q  V   + 
Sbjct: 90  LLE--PLPVHTPVDAVVSVAAFHWLPDHDTVFRNLAAVMRPEAQLAFECGGQGNVASIVH 147

Query: 164 A 164
           A
Sbjct: 148 A 148


>gi|90419060|ref|ZP_01226971.1| putative methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337140|gb|EAS50845.1| putative methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 220

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E++    G  V+++G G G    +   +GA  +  IE+D       +     
Sbjct: 62  PYIVARMLEAAAIAPGDRVLDVGTGSGYAAAVAAEMGA-TICSIERDAALGEAARARLQA 120

Query: 93  HPNRLEIIQDD 103
               + +   D
Sbjct: 121 LGYDVAVTVGD 131


>gi|84622509|ref|YP_449881.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|84366449|dbj|BAE67607.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 218

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPN 95
           ++ ++     G  V+E+G G G  T  L TL AR+V+ +E D       +    +    +
Sbjct: 70  RMLQALDLQPGEDVLEVGTGSGFATACLATL-AREVVSLEIDPALAAAARANLDRTGLGS 128

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            + I   D      E+ F+       +  LP
Sbjct: 129 NVRIETADVFCWQSERRFDAICVTGAVDTLP 159


>gi|322376393|ref|ZP_08050886.1| methyltransferase domain protein [Streptococcus sp. M334]
 gi|321282200|gb|EFX59207.1| methyltransferase domain protein [Streptococcus sp. M334]
          Length = 196

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 16/138 (11%)

Query: 29  FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           FL D  +  KK+ +              G TV+++G G G L   L      +  +++ +
Sbjct: 30  FLTDAGVFSKKMIDFGSQLLLKCLEVNQGETVLDVGCGYGTLGLSLAKAYGVQATMVDIN 89

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +   + +  + ++     I Q +  +    KF        +I+N P   G +++   I 
Sbjct: 90  NRALDLARQNAERNKVEATIFQSNIYEQVEGKF------DHVISNPPIRAGKQVVHEIIE 143

Query: 140 -ADTWPPFWESLTLLFQK 156
            +  +      LT++ QK
Sbjct: 144 KSKDFLETGGDLTIVIQK 161


>gi|299471167|emb|CBN79024.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 610

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
           + I +++       V+++G G G L+      GARKVI +++        ++   ++   
Sbjct: 275 RAICDNAAFFKDKVVLDVGCGTGVLSCFAARAGARKVIGVDR-SDIVVKAREVVRANGFD 333

Query: 95  NRLEIIQD 102
             + ++Q 
Sbjct: 334 GVVTLVQG 341


>gi|282165673|ref|YP_003358058.1| tRNA methyltransferase [Methanocella paludicola SANAE]
 gi|282157987|dbj|BAI63075.1| tRNA methyltransferase [Methanocella paludicola SANAE]
          Length = 241

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHP 94
           +  I   +G     TV++ G G G L   L T+ A+KV+  E ++QF    K        
Sbjct: 76  IGAIIAYTGICPSDTVLDAGTGSGVLAVYLGTI-AKKVVTYESNEQFANNAKKNVELAGL 134

Query: 95  NRLEIIQDDALK 106
             +E+   D L+
Sbjct: 135 GNVEVRHGDILE 146


>gi|256819428|ref|YP_003140707.1| Eco57I restriction endonuclease [Capnocytophaga ochracea DSM
          7271]
 gi|256581011|gb|ACU92146.1| Eco57I restriction endonuclease [Capnocytophaga ochracea DSM
          7271]
          Length = 527

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
          K   GQ F     +   +   +       V+E   G G    +L   G + +   E D  
Sbjct: 10 KNKYGQYF-TPKVVADFMVGLANISPNTKVLEPACGEGVFLSLLQEKGIKNITAFEIDTA 68

Query: 82 FF 83
            
Sbjct: 69 LA 70


>gi|88802687|ref|ZP_01118214.1| hypothetical protein PI23P_08855 [Polaribacter irgensii 23-P]
 gi|88781545|gb|EAR12723.1| hypothetical protein PI23P_08855 [Polaribacter irgensii 23-P]
          Length = 242

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 49  ITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDAL 105
            T+++IGAG G L+ ML     A  +  +E D+  +    +        +RL        
Sbjct: 41  DTILDIGAGTGVLSLMLAQRSDAMTIDAVELDENAYEQSVENFENSDWGDRLYCYNASFQ 100

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           +   E      +   I++N P+   T   F  +        + S    
Sbjct: 101 EFVAEISIEEETYDLIVSNPPFYTDT---FKTLDEARNKARFTSSMSF 145


>gi|251781572|ref|YP_002995873.1| adenine-specific methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390200|dbj|BAH80659.1| adenine-specific methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|323126365|gb|ADX23662.1| adenine-specific methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 317

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLE 98
           E     D + V+EIG+G GNL Q LL   ++K+  + IE D     +   I+    +   
Sbjct: 103 EQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKKLDYVGIELDDLLIDLSASIAEVMDSSAR 162

Query: 99  IIQDDALK 106
            IQ+DA++
Sbjct: 163 FIQEDAVR 170


>gi|229192586|ref|ZP_04319547.1| Dimethyladenosine transferase [Bacillus cereus ATCC 10876]
 gi|228590893|gb|EEK48751.1| Dimethyladenosine transferase [Bacillus cereus ATCC 10876]
          Length = 212

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTDKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I   D L  +     +
Sbjct: 91  FSITDGDFLSFEVPNSID 108


>gi|257052222|ref|YP_003130055.1| Methyltransferase type 11 [Halorhabdus utahensis DSM 12940]
 gi|256690985|gb|ACV11322.1| Methyltransferase type 11 [Halorhabdus utahensis DSM 12940]
          Length = 251

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                G  +++IG G G LT  +    A +V+ I+   +     +D  S+   R+     
Sbjct: 29  LDPQPGERILDIGCGTGELTAEIAASEA-EVVGIDSSAKMIDAARDRHSEPTFRV----A 83

Query: 103 DALKVDFEKFFN 114
           DA   D ++ F+
Sbjct: 84  DATAFDPDESFD 95


>gi|329117973|ref|ZP_08246686.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465861|gb|EGF12133.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 218

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             I+ ++ +  G      V+EIG G G    +L  L A +V+ ++ D +
Sbjct: 63  PKIVARLVQGLGLQKTDKVLEIGTGSGYAAAVLAKL-AGEVVSVDIDPE 110


>gi|268326443|emb|CBH40031.1| hypothetical protein, SAM-dependent methyltransferase type 11
           family [uncultured archaeon]
          Length = 311

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
                     +++ G GPG+L  +L   G +K+I ++ ++    + ++  S +P  ++++
Sbjct: 36  SHLNVDKDGIILDFGTGPGSLALVLAKSGYKKIIGLDINEGMLGVAREKLSDYP--VKLV 93

Query: 101 QDDALKVDFEK 111
           + D L +  + 
Sbjct: 94  RGDGLHLPIDD 104


>gi|213967241|ref|ZP_03395390.1| glycosyl transferase, group 2 family protein [Pseudomonas syringae
           pv. tomato T1]
 gi|302059368|ref|ZP_07250909.1| glycosyl transferase, group 2 family protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302134885|ref|ZP_07260875.1| glycosyl transferase, group 2 family protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213928083|gb|EEB61629.1| glycosyl transferase, group 2 family protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 1585

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             L+G +V+EIGAG G +++ L  +GA  V+ +E   +   I    +    N + ++ + 
Sbjct: 81  NLLEGKSVLEIGAGCGAISRYLGEVGAN-VLSLEGSPRRAAIAASRTRDLDN-VTVLAER 138

Query: 104 ALKVDFEKFFNI 115
                 ++ F++
Sbjct: 139 FDDFKVDQQFDV 150


>gi|146319984|ref|YP_001199695.1| adenine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|253751046|ref|YP_003024187.1| hypothetical protein SSUSC84_0128 [Streptococcus suis SC84]
 gi|253752947|ref|YP_003026087.1| hypothetical protein SSU0133 [Streptococcus suis P1/7]
 gi|253754770|ref|YP_003027910.1| hypothetical protein SSUBM407_0130 [Streptococcus suis BM407]
 gi|145690790|gb|ABP91295.1| Adenine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|251815335|emb|CAZ50906.1| conserved hypothetical protein [Streptococcus suis SC84]
 gi|251817234|emb|CAZ54962.1| conserved hypothetical protein [Streptococcus suis BM407]
 gi|251819192|emb|CAR44368.1| conserved hypothetical protein [Streptococcus suis P1/7]
 gi|292557591|gb|ADE30592.1| Adenine-specific DNA methylase [Streptococcus suis GZ1]
 gi|319757300|gb|ADV69242.1| adenine-specific DNA methylase [Streptococcus suis JS14]
          Length = 317

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 11/80 (13%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPIL 86
           FL+D  +             +TV+EIG+G GNL Q +L    +++  + IE D     + 
Sbjct: 100 FLVDQLV---------PTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLS 150

Query: 87  KDISSQHPNRLEIIQDDALK 106
             I+      +   Q DA++
Sbjct: 151 ASIADVMQADISFAQGDAVR 170


>gi|118466168|ref|YP_881597.1| PimT protein [Mycobacterium avium 104]
 gi|118167455|gb|ABK68352.1| PimT protein [Mycobacterium avium 104]
          Length = 281

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISS-- 91
             +I        G  V+E GAG G LT  LL       +VI  E+        +   S  
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPQGRVISYEQRADHAEHAQRNVSVF 147

Query: 92  ---QHPNRLEIIQDDALKVDFEK 111
              + P+  ++I DD    D   
Sbjct: 148 FGGEAPDNWQLIVDDVADSDLPD 170


>gi|67477207|ref|XP_654109.1| Putative methyltransferase NSUN5 [Entamoeba histolytica HM-1:IMSS]
 gi|56471131|gb|EAL48723.1| Putative methyltransferase NSUN5 [Entamoeba histolytica HM-1:IMSS]
          Length = 372

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 7/124 (5%)

Query: 58  PGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFN 114
           PGN T  L T+      +   +KD +   +L+     +    +E+I  D L+ D E    
Sbjct: 186 PGNKTTHLATIMNNTGIIYAFDKDIKRAELLRTTVKNYQATNIEVICGDFLQSDIEDIRF 245

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN--SPHYG 172
            +    +    P   G+ +L   ++ +   P    +   FQ ++       KN     Y 
Sbjct: 246 ENVTHILCD--PSCSGSGILERQLTKEKRDPARLRMLSSFQTKIVSHAMKFKNVQCITYS 303

Query: 173 RLSV 176
             SV
Sbjct: 304 TCSV 307


>gi|327353824|gb|EGE82681.1| hypothetical protein BDDG_05625 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 336

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            ++G  V+E+G+G G L+   L  LGAR V   ++D      +KD + Q+      I  D
Sbjct: 174 LIEGKNVVELGSGTGFLSMYCLKCLGARSVTATDRDPALISTIKDCAMQNDPSCNRISAD 233

Query: 104 A 104
            
Sbjct: 234 I 234


>gi|302868555|ref|YP_003837192.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302571414|gb|ADL47616.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 271

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 29 FL---LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF 83
          FL   LD    +++   +G   G TV ++GAG G LT  L    A    V  ++ D +  
Sbjct: 28 FLGEILDPGT-RRVLTDAGVAPGWTVTDVGAGAGTLTAWLSDQVAPGGHVTAVDLDPRHL 86

Query: 84 PI 85
          P 
Sbjct: 87 PA 88


>gi|261345857|ref|ZP_05973501.1| protein-L-isoaspartate O-methyltransferase [Providencia rustigianii
           DSM 4541]
 gi|282566348|gb|EFB71883.1| protein-L-isoaspartate O-methyltransferase [Providencia rustigianii
           DSM 4541]
          Length = 208

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+           ++EIG G G  T +L  L A  V  +E+       L+  + +
Sbjct: 61  PYIVAKMTALLSVKPTDHILEIGTGSGYQTAVLAHL-AEHVYSVER----VKSLQWTAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +    P    I+   P  I + LL   
Sbjct: 116 RFKLLDLHNISTRHGDGWEGWLSKGPFDGIIVTAAPSEIPSLLLSQL 162


>gi|330466638|ref|YP_004404381.1| type 11 methyltransferase [Verrucosispora maris AB-18-032]
 gi|328809609|gb|AEB43781.1| methyltransferase type 11 [Verrucosispora maris AB-18-032]
          Length = 260

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ----FFPILKD 88
             +L  + E+       T +++G G G L+  L    AR   VI  D +           
Sbjct: 22  PEVLDALVEAFDLGPDDTAVDLGCGTGQLSLPLA---ARVGTVIGVDPEPDMLALARHAA 78

Query: 89  ISSQHPNRLEIIQDD 103
           +++  PN + ++ DD
Sbjct: 79  LNAARPNTMWLLGDD 93


>gi|163793822|ref|ZP_02187796.1| Methyltransferase type 12 [alpha proteobacterium BAL199]
 gi|159180933|gb|EDP65450.1| Methyltransferase type 12 [alpha proteobacterium BAL199]
          Length = 215

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           L++L +I        G  V+++G G G L + LL      + +   D++    L +  ++
Sbjct: 15  LDVLVQIVTDLA-KPGDAVLDLGCGTGYL-EHLLEARRDDLALTGVDRK-GSALDEAHTR 71

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
              R+  ++ D       +  +      + A   +++ 
Sbjct: 72  FGERVTFVEGDLTAPTMIQLPDQRFRFIVSALTFHDLT 109


>gi|126465775|ref|YP_001040884.1| RNA methylase [Staphylothermus marinus F1]
 gi|126014598|gb|ABN69976.1| putative RNA methylase [Staphylothermus marinus F1]
          Length = 160

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           + + + + +G+     V ++G G G  L   +     +K + I+KD +     +  + ++
Sbjct: 14  VARMMLKLAGAGPDDIVYDLGCGDGRILIVAVKEFNVKKAVGIDKDPERIREARKNAEKN 73

Query: 94  --PNRLEIIQDDALKVDFEK 111
              NR+ +I DD   VD  +
Sbjct: 74  GVSNRIVLINDDFFNVDISE 93


>gi|321462188|gb|EFX73213.1| hypothetical protein DAPPUDRAFT_58148 [Daphnia pulex]
          Length = 484

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 17/104 (16%)

Query: 25  MGQNFLLDLNILKK-----IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           + Q    D N L +     I      + G +++E+G+G G  T+ L    A+ +  ++  
Sbjct: 17  LSQ----DANELDRMEKDEILSYLPPIKGRSILELGSGIGRFTEHLAE-NAKHLTTVDF- 70

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-FNISSPIRII 122
                 ++    +H +   +   D L+ D  +  F       +I
Sbjct: 71  --MADYVEKNRQRHGHHAHV---DFLRADVTELQFPAEKKFDVI 109


>gi|295838847|ref|ZP_06825780.1| O-methyltransferase [Streptomyces sp. SPB74]
 gi|197695397|gb|EDY42330.1| O-methyltransferase [Streptomyces sp. SPB74]
          Length = 336

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++ E      G  V+E+GAG G    +L    G   V  ++ D +     +   +
Sbjct: 113 PSLMARMLEGLDVRPGDRVLEVGAGTGWNAGLLCHRLGEDLVTTVDLDPEITESARAHLA 172

Query: 92  QHPNRLEIIQDDALKVDFEK 111
           +   R E+   D ++    +
Sbjct: 173 RAGFRPEVGTGDGMRGWTAR 192


>gi|261879547|ref|ZP_06005974.1| ribosomal protein L11 methyltransferase [Prevotella bergensis DSM
           17361]
 gi|270333773|gb|EFA44559.1| ribosomal protein L11 methyltransferase [Prevotella bergensis DSM
           17361]
          Length = 288

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 32  DLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +    + I  +  +L   G  V++ G G G L  +    GA+ VI  + D+      +  
Sbjct: 132 NHQTTRMIISTLLNLPLQGKRVLDCGCGSGILGIVASKFGAKSVIGYDIDEWSVDNARHN 191

Query: 90  SSQHP-NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNI 129
           + Q+  + LE+I  DA  +D  E  F++     ++AN+  NI
Sbjct: 192 AEQNRVSNLEVIHGDASVLDHVEGLFDV-----VLANINRNI 228


>gi|170738785|ref|YP_001767440.1| methyltransferase type 11 [Methylobacterium sp. 4-46]
 gi|168193059|gb|ACA15006.1| Methyltransferase type 11 [Methylobacterium sp. 4-46]
          Length = 288

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            + +    G  V+EIG G G L   L+      V  +E  Q     L+         ++ 
Sbjct: 93  IQMASLSRGSRVLEIGFGAGGL-AELMVRCGLDVTAVEVRQSNCDYLEQRVKSFGGTVDA 151

Query: 100 IQDDA--LKVD--------FEKFFNISSPIRIIANLPYNIGTRLLF 135
              +   +  D        +E F ++ SP  I+  L  ++    +F
Sbjct: 152 RAGEVEHMTFDKEFDAIVFYESFHHMPSPWGIVRQLRNHLSAEGVF 197


>gi|163741205|ref|ZP_02148597.1| Cyclopropane-fatty-acyl-phospholipid synthase [Phaeobacter
           gallaeciensis 2.10]
 gi|161385558|gb|EDQ09935.1| Cyclopropane-fatty-acyl-phospholipid synthase [Phaeobacter
           gallaeciensis 2.10]
          Length = 401

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 29/178 (16%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
             + +  G   G  V+E+G G G   +        +V  +   ++     ++    +   
Sbjct: 175 ASMVDQMGVKPGDHVLEVGCGWGGFAEYAARERGLRVTGLTISEEQLKYARERIEKAGLS 234

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW----ESL 150
           +R+E+   D                R        I +  +F  +    WP ++    + L
Sbjct: 235 DRVELRMQD---------------YRDCEGTFDGIASIEMFEAVGEKYWPAYFNMVRDRL 279

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
               Q  +     A +    Y R             +F   P    P+PK+    +  
Sbjct: 280 RPGGQATLQIITVADRRWTVYKRGVDFIQ-----KHIF---PGGMLPAPKILRQQVEL 329


>gi|221069614|ref|ZP_03545719.1| Cyclopropane-fatty-acyl-phospholipid synthase [Comamonas
           testosteroni KF-1]
 gi|220714637|gb|EED70005.1| Cyclopropane-fatty-acyl-phospholipid synthase [Comamonas
           testosteroni KF-1]
          Length = 433

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPN 95
           + IA       G  V++IG G G L++ L  + GA  V  I    +     +  +SQ   
Sbjct: 168 RHIAAKLLIEPGQRVLDIGCGWGGLSRYLAEVAGAGHVTGITLSTEQLAGARSRASQS-- 225

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIAN--LPYNIGTRL 133
               I  + L+   E + +   P   I +  +  ++GTR 
Sbjct: 226 ----IHGERLEYRLEDYRDTQGPFERIVSVGMFEHVGTRF 261


>gi|86605611|ref|YP_474374.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Synechococcus sp. JA-3-3Ab]
 gi|86554153|gb|ABC99111.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Synechococcus sp. JA-3-3Ab]
          Length = 208

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E++       V+EIG G G    +L  L AR+V  +E   +  P+       
Sbjct: 64  PYIVAFMTEAARLTPESVVLEIGTGSGYQAAILAEL-ARQVYSLE---RLAPLAARAQQT 119

Query: 93  HPN----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
             +     +E+ Q D  +   E   +      ++   P  + T LL   
Sbjct: 120 LASLGYRNVEVRQGDGYQGWPE---HAPYDAIVVTAAPPTLPTLLLDQL 165


>gi|20093603|ref|NP_613450.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
 gi|19886465|gb|AAM01380.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
          Length = 182

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
             + +  ++G  +G  V++ G G G +      +G  +V+ ++ D +   + +  + ++ 
Sbjct: 27  TAEFMVRAAGVEEGDFVVDAGTGNGVVAIAAAEMGC-EVLAVDVDPEMIDMARRNAEEYG 85

Query: 94  -PNRLEIIQDDA 104
             + +E +  DA
Sbjct: 86  VEDSIEFVVADA 97


>gi|84500035|ref|ZP_00998301.1| protein-L-isoaspartate O-methyltransferase [Oceanicola batsensis
           HTCC2597]
 gi|84391969|gb|EAQ04237.1| protein-L-isoaspartate O-methyltransferase [Oceanicola batsensis
           HTCC2597]
          Length = 217

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 25  MGQ-NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           +GQ   LLD   L K+ ++        V++IG G G  +  +    A  VI +E+D+   
Sbjct: 55  LGQGRVLLDPRTLAKMLDALDIHADELVLDIGTGTGY-SAAVAARLAEAVIALEEDEALI 113


>gi|254382682|ref|ZP_04998040.1| methyltransferase [Streptomyces sp. Mg1]
 gi|194341585|gb|EDX22551.1| methyltransferase [Streptomyces sp. Mg1]
          Length = 235

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDI 89
           +D  I ++          + V+++G G G  TQ L L     KV  +EKD     + +  
Sbjct: 5   VDEQIAQR----FPVGQRLRVLDVGMGQG--TQALRLARAGHKVTGLEKDPGMLDVARAA 58

Query: 90  SSQHP----NRLEIIQDD 103
            +  P    +R+E+I+ D
Sbjct: 59  LAGEPAGIQDRVELIEGD 76


>gi|169839380|ref|ZP_02872568.1| Dimethyladenosine transferase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 45

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
           +++AN+PY I + ++   +         + + L+ QKEV ERI +Q 
Sbjct: 2   KVVANIPYYITSPIINKLLEYREN---IDEIYLMVQKEVAERIASQP 45


>gi|153207274|ref|ZP_01946038.1| 3-demethylubiquinone-9 3-O-methyltransferase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165918676|ref|ZP_02218762.1| 3-demethylubiquinone-9 3-O-methyltransferase [Coxiella burnetii RSA
           334]
 gi|212218182|ref|YP_002304969.1| 3-demethylubiquinone-9 3-methyltransferase [Coxiella burnetii
           CbuK_Q154]
 gi|226725538|sp|B6J5Y2|UBIG_COXB1 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|120576762|gb|EAX33386.1| 3-demethylubiquinone-9 3-O-methyltransferase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165917611|gb|EDR36215.1| 3-demethylubiquinone-9 3-O-methyltransferase [Coxiella burnetii RSA
           334]
 gi|212012444|gb|ACJ19824.1| 3-demethylubiquinone 3-methyltransferase [Coxiella burnetii
           CbuK_Q154]
          Length = 234

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L++   LK I +      G  V+++G G G L++ L   GA  V  ++  +    + K+ 
Sbjct: 35  LINPVRLKYIEQQITL-KGKHVLDVGCGGGLLSEALAKHGA-IVTGVDMSESLIDVAKNH 92

Query: 90  SSQHPNR-------LEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           + Q           +EI+  DA + D     E   ++  P R+I N    I         
Sbjct: 93  AEQQQLNINYQCQDIEILTKDAQRFDIITCMELLEHVPDPQRMIKNCAALIKPG--GKLF 150

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYG---RLSVLTGW 180
            +     F   L  +   E    +   K +  Y    R S LT W
Sbjct: 151 FSTINRNFKAYLYTIVGAEYVFNLL-PKGTHDYAQFIRPSELTQW 194


>gi|119719384|ref|YP_919879.1| methyltransferase type 11 [Thermofilum pendens Hrk 5]
 gi|119524504|gb|ABL77876.1| tRNA (adenine-57, 58-N(1)-) methyltransferase [Thermofilum pendens
           Hrk 5]
          Length = 255

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFF-PILKDISS-QHP 94
           I  S+    G  V+E G G G LT +L      + +V   E  + F+   L+++      
Sbjct: 89  IVVSANIGPGSRVVEAGTGTGFLTAILAWYVRPSGRVYTYEIRKDFYEAALENLKEVGLL 148

Query: 95  NRLEIIQDDALKVDFEK-----FFNISSPIRIIANLPYNIGT 131
             +E    D  K   E        ++  P  +       +  
Sbjct: 149 PYVEAKNKDIRKGIDESDVDAVVLDMPDPWNVAEEAYNALTH 190


>gi|163942565|ref|YP_001647449.1| ribosomal RNA adenine dimethylase [Bacillus weihenstephanensis
           KBAB4]
 gi|163864762|gb|ABY45821.1| ribosomal RNA adenine dimethylase [Bacillus weihenstephanensis
           KBAB4]
          Length = 192

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI--EKDQQFFPILKDISSQ 92
           + KK+ ++        ++E+G G G+ T+ ++    ++ I I  E ++ FF        +
Sbjct: 27  LAKKMVDAIDFETAKYIVELGPGTGSFTKGIMKRKKKETIFILVEINEVFFKE-LKKKFK 85

Query: 93  HPNRLEIIQDDA--LKVDFEKFFNISSPIRIIA----NLPYNIGTRLLFNWISADTWPPF 146
             + + +I   A  +K   E+    S    +      +LP  +  R+L N + +      
Sbjct: 86  DDSSVIVIHGSAENIKKYMEELNVESIDYVLSGLPFASLPKEVSARILSNVMESLQQNGE 145

Query: 147 WESLTLLFQK 156
           + +      K
Sbjct: 146 FITFQYSLVK 155


>gi|313200982|ref|YP_004039640.1| cyclopropane-fatty-acyl-phospholipid synthase [Methylovorus sp.
           MP688]
 gi|312440298|gb|ADQ84404.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylovorus sp.
           MP688]
          Length = 392

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 7/90 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I        G  ++EIG G G L +         V  I   ++   + +   +  P 
Sbjct: 165 LDMICRKLALKPGEHLLEIGCGWGGLARYAAEHYGVNVTGITVSKEQQALAQQRCAHLPV 224

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            + +       +D+         I  +   
Sbjct: 225 EIRL-------MDYRDLRGQYDKIVSVGMF 247


>gi|308069956|ref|YP_003871561.1| ribosomal protein L11 methyltransferase (L11 Mtase) [Paenibacillus
           polymyxa E681]
 gi|305859235|gb|ADM71023.1| Ribosomal protein L11 methyltransferase (L11 Mtase) [Paenibacillus
           polymyxa E681]
          Length = 324

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G  VI++G G G L    + LGA+ V+ ++ D       ++    +    R+ I + 
Sbjct: 176 IKGGEEVIDVGTGSGILAIGAVKLGAKHVLALDLDPVAVSSARENTRLNGLEERITIKES 235

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           D L V       +   + +   +   +   +L 
Sbjct: 236 DLLSVLNASDPTLGIQLPVKLVVANILAEIILL 268


>gi|253998884|ref|YP_003050947.1| cyclopropane fatty acyl phospholipid synthase [Methylovorus sp.
           SIP3-4]
 gi|253985563|gb|ACT50420.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylovorus sp.
           SIP3-4]
          Length = 390

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 7/90 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I        G  ++EIG G G L +         V  I   ++   + +   +  P 
Sbjct: 163 LDMICRKLALKPGEHLLEIGCGWGGLARYAAEHYGVNVTGITVSKEQQALAQQRCAHLPV 222

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            + +       +D+         I  +   
Sbjct: 223 EIRL-------MDYRDLRGQYDKIVSVGMF 245


>gi|238917093|ref|YP_002930610.1| ribosomal protein L11 methyltransferase [Eubacterium eligens ATCC
           27750]
 gi|259534526|sp|C4Z0Q0|PRMA_EUBE2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|238872453|gb|ACR72163.1| ribosomal protein L11 methyltransferase [Eubacterium eligens ATCC
           27750]
          Length = 318

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQ 101
             DG  V+++G G G L+ + L  GA+     + D       ++ + Q+     +LE+I+
Sbjct: 170 VKDGDEVLDVGCGSGILSVVALKYGAKHAFGTDLDPNAIIASEENAEQNNIDKKQLEVIE 229

Query: 102 DDALKVDFEKFFNISSPIRIIA-NLPYNIGTRLLFNWISADTWPPFW--ESLTLLFQKEV 158
            + +     K         I+  N+  ++   L            ++    +    + EV
Sbjct: 230 GNIIDDKAVKDACGYECYDIVCANILADVLEPLSTCIHEHMKHGAYFITSGIIDTKENEV 289

Query: 159 GERITAQK 166
            E      
Sbjct: 290 AEAFKKNP 297


>gi|206969888|ref|ZP_03230842.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|228923126|ref|ZP_04086417.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228954659|ref|ZP_04116682.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229071882|ref|ZP_04205094.1| Dimethyladenosine transferase [Bacillus cereus F65185]
 gi|229180650|ref|ZP_04307990.1| Dimethyladenosine transferase [Bacillus cereus 172560W]
 gi|206735576|gb|EDZ52744.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|228602795|gb|EEK60276.1| Dimethyladenosine transferase [Bacillus cereus 172560W]
 gi|228711254|gb|EEL63217.1| Dimethyladenosine transferase [Bacillus cereus F65185]
 gi|228804986|gb|EEM51582.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228836505|gb|EEM81855.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 212

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E   +     V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I   D L  +     +
Sbjct: 91  FSITDGDFLSFEVPNSID 108


>gi|156742023|ref|YP_001432152.1| ribosomal RNA adenine methylase transferase [Roseiflexus
           castenholzii DSM 13941]
 gi|156233351|gb|ABU58134.1| ribosomal RNA adenine methylase transferase [Roseiflexus
           castenholzii DSM 13941]
          Length = 185

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
           L    V++IGAG   L   +     R+V  +E++      L        + L ++  DAL
Sbjct: 28  LPDDVVVDIGAGDLRLALRMAAR-VRRVYAVERNPVLVERL----MGSFDNLVVVCADAL 82

Query: 106 KVDFEK 111
                 
Sbjct: 83  TWTLPP 88


>gi|161528347|ref|YP_001582173.1| hypothetical protein Nmar_0839 [Nitrosopumilus maritimus SCM1]
 gi|160339648|gb|ABX12735.1| hypothetical protein Nmar_0839 [Nitrosopumilus maritimus SCM1]
          Length = 275

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           + +L    +I+IG+G G +      LG      IE D     + K I +      + I D
Sbjct: 110 AKNLGYEELIDIGSGDGRIAFCGKILG-FTTHSIEIDDGLVELQKIICNDTKQSFDPICD 168

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           DAL+ D+ K F +S P+  I  LP   G  L  + I         +S T + 
Sbjct: 169 DALEFDYSK-FQLSKPVFFIGGLPQMGGDMLATSIIDKINSIDQLKSSTGIV 219


>gi|118589052|ref|ZP_01546459.1| Cyclopropane-fatty-acyl-phospholipid synthase [Stappia aggregata
           IAM 12614]
 gi|118438381|gb|EAV45015.1| Cyclopropane-fatty-acyl-phospholipid synthase [Stappia aggregata
           IAM 12614]
          Length = 409

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRL 97
              +G      V+EIG G G   + +       V  +   Q+ F   ++    +   +++
Sbjct: 185 VRQTGIQPDHRVLEIGCGWGGFAEYVAKSVGANVRALTISQEQFDYARERIYKAGLNDKV 244

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           E++  D                R    +   I +  +F  +    WP ++  L+   
Sbjct: 245 EVVFQD---------------YRDENGVFDRIASIEMFEAVGEKYWPTYFRQLSKCL 286


>gi|55379669|ref|YP_137519.1| methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55232394|gb|AAV47813.1| methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 252

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + + +      G  V+++G G G+LT  +   GA +V+ I+   +     +D    +P  
Sbjct: 23  QSVVDLLDPHPGEQVLDVGCGTGHLTAEIADSGA-EVVGIDASAEMVAQARD---AYP-T 77

Query: 97  LEIIQDDALKVDFEKFFN 114
           L   Q D      ++ F+
Sbjct: 78  LTFEQADVRSYTADRPFD 95


>gi|14591605|ref|NP_143687.1| hypothetical protein PH1858 [Pyrococcus horikoshii OT3]
 gi|3258297|dbj|BAA30980.1| 253aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 253

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD--ISSQHP 94
           I   +G   G  ++E G G G LT  L  +     K++  E  + F  +  +    +   
Sbjct: 85  IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPQGKIVSYEIREDFAKLAWENIKLAGFE 144

Query: 95  NRLEI 99
           +R+ I
Sbjct: 145 DRVTI 149


>gi|320101274|ref|YP_004176866.1| protein-L-isoaspartate O-methyltransferase [Desulfurococcus mucosus
           DSM 2162]
 gi|319753626|gb|ADV65384.1| protein-L-isoaspartate O-methyltransferase [Desulfurococcus mucosus
           DSM 2162]
          Length = 226

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 39/174 (22%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-------KVIVIEKDQQFFPILKDIS--S 91
           +      G  V+E+G G G    +L  + AR        V  +E+  +     +     +
Sbjct: 72  DELDPEPGDKVLEVGTGSGYQAAVLAEIVARSDPGRKGHVYSVERIPELAEYARTRLREA 131

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
            + + + ++  D               + +    P+N   R++    +    PP  +   
Sbjct: 132 GYGDDVTVVVGD-------------GTLGLPGEAPFN---RVIVTAATPAVPPPLID--- 172

Query: 152 LLFQKEVGERITAQKNSPHYGRL--------SVLTGWRTKATMMFDISPHVFFP 197
              Q   G R+ A        RL        S+   +  +   +  I  + + P
Sbjct: 173 ---QLADGGRLVAPVGDRFSQRLVIVEKKGGSITKRYGMECVFVPLIGRYGWHP 223


>gi|315125363|ref|YP_004067366.1| hypothetical protein PSM_A0260 [Pseudoalteromonas sp. SM9913]
 gi|315013876|gb|ADT67214.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 394

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 33/83 (39%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +       V+E  AG G+L +ML   GA+ V  +E         +  + Q    ++  Q 
Sbjct: 110 ALPTSNQPVLEWCAGKGHLGRMLAFNGAQSVHSVELQSHLCEQGQKSAQQQGLAIQFSQA 169

Query: 103 DALKVDFEKFFNISSPIRIIANL 125
           D LK   + FF+  +    +   
Sbjct: 170 DVLKDSIQDFFSPHTHAVALHAC 192


>gi|312866659|ref|ZP_07726873.1| methyltransferase small domain protein [Streptococcus parasanguinis
           F0405]
 gi|311097740|gb|EFQ55970.1| methyltransferase small domain protein [Streptococcus parasanguinis
           F0405]
          Length = 194

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 18/144 (12%)

Query: 25  MGQ--NFLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ  NF  D  +  KK+ +        +    +G +V+++G G G +   L       V
Sbjct: 21  LGQKMNFYTDAGVFSKKMIDYGSQVLLSTLDFQEGESVLDVGCGYGPIGLSLAKAQGVAV 80

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +++   + K  +S++    +I   D  +   E  F+      +I+N P   G ++
Sbjct: 81  TMVDVNERALDLAKKNASRNGVEAQIFSSDVYEA-VEGVFD-----HVISNPPIRAGKKV 134

Query: 134 LFNWISAD-TWPPFWESLTLLFQK 156
           +   I+           LT++ QK
Sbjct: 135 VHQVITGSFEHLKPGGDLTIVIQK 158


>gi|270265309|ref|ZP_06193570.1| methyltransferase small [Serratia odorifera 4Rx13]
 gi|270040713|gb|EFA13816.1| methyltransferase small [Serratia odorifera 4Rx13]
          Length = 476

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKD--ISSQHPNRLE 98
           +       V++IG+G G +  ML    A  V+   +E D+      +D  ++S  P R+ 
Sbjct: 270 APLAQARRVLDIGSGSGLIALMLAQRSADNVLIDAVELDEAAAEQARDNVLASPWPQRIR 329

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +   D          +      I++N PY
Sbjct: 330 VHAQDI---HHFARHHAGEYDLIVSNPPY 355


>gi|257468765|ref|ZP_05632859.1| putative methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317063020|ref|ZP_07927505.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313688696|gb|EFS25531.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 302

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-K 87
           F++    ++KI  +        V+++G G G L        A++V  ++  +     L K
Sbjct: 69  FIIKKEYIEKIINAGYPYKNKKVLDLGCGTGMLAIETAKY-AKEVYALDISKAMTEKLKK 127

Query: 88  DISSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           D   +  + +  ++ DA  L+ +   F  + + + +      +I    +   +  
Sbjct: 128 DCIEKKIDNIIAVEGDAHNLQFEDNTFDTVITRLAVHHFANPHIVFSEIKRVLKN 182


>gi|168035654|ref|XP_001770324.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678355|gb|EDQ64814.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 387

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--P 94
             I +++    G TV+++G G G L       GARKV  +E         + + + +   
Sbjct: 56  DSIFKNARHFKGKTVLDVGTGSGILAIWSAQAGARKVYAVEA-TDMATHARALVAGNGME 114

Query: 95  NRLEIIQD 102
           N +E+I+ 
Sbjct: 115 NIVEVIEG 122


>gi|94501836|ref|ZP_01308348.1| transcriptional regulator, ArsR family protein [Oceanobacter sp.
           RED65]
 gi|94426057|gb|EAT11053.1| transcriptional regulator, ArsR family protein [Oceanobacter sp.
           RED65]
          Length = 337

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L +I ++ G     TV+E+G G G   + L     R VI ++       + K  +     
Sbjct: 158 LDEIIQTLGLESRSTVMEVGPGQGGFLKPLSQRYER-VIALDNSPAMLDLAKQQTDSKQQ 216

Query: 96  RLEIIQDD 103
            ++ +  D
Sbjct: 217 NIDFLLGD 224


>gi|73662456|ref|YP_301237.1| O-methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494971|dbj|BAE18292.1| putative O-methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 213

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKD 88
           ++D   L+ I +         ++EIG   G       ++     +  IE+D       K+
Sbjct: 33  IVDRLTLEMIKQLIRLHKPQNILEIGTAIGYSAMQFASVSKDVHITTIERDSDMQQQAKE 92

Query: 89  --ISSQHPNRLEIIQDDALK 106
                   N++ +++ DAL+
Sbjct: 93  NIRKYDFSNQVTLVEGDALE 112


>gi|29653699|ref|NP_819391.1| 3-demethylubiquinone-9 3-methyltransferase [Coxiella burnetii RSA
           493]
 gi|161829915|ref|YP_001596294.1| 3-demethylubiquinone-9 3-methyltransferase [Coxiella burnetii RSA
           331]
 gi|212213149|ref|YP_002304085.1| 3-demethylubiquinone-9 3-methyltransferase [Coxiella burnetii
           CbuG_Q212]
 gi|39932522|sp|Q820B5|UBIG_COXBU RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|189037619|sp|A9NBI0|UBIG_COXBR RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|226725539|sp|B6J1W2|UBIG_COXB2 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|29540962|gb|AAO89905.1| 3-demethylubiquinone 3-methyltransferase [Coxiella burnetii RSA
           493]
 gi|161761782|gb|ABX77424.1| 3-demethylubiquinone-9 3-O-methyltransferase [Coxiella burnetii RSA
           331]
 gi|212011559|gb|ACJ18940.1| 3-demethylubiquinone 3-methyltransferase [Coxiella burnetii
           CbuG_Q212]
          Length = 234

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L++   LK I +      G  V+++G G G L++ L   GA  V  ++  +    + K+ 
Sbjct: 35  LINPVRLKYIEQQITL-KGKHVLDVGCGGGLLSEALAKHGA-IVTGVDMSESLIDVAKNH 92

Query: 90  SSQHPNR-------LEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           + Q           +EI+  DA + D     E   ++  P R+I N    I         
Sbjct: 93  AEQQQLNINYQCQDIEILTKDAQRFDIITCMELLEHVPDPQRMIKNCAALIKPG--GKLF 150

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYG---RLSVLTGW 180
            +     F   L  +   E    +   K +  Y    R S LT W
Sbjct: 151 FSTINRNFKAYLYTIVGAEYVFNLL-PKGTHDYAQFIRPSELTQW 194


>gi|331698431|ref|YP_004334670.1| phospholipid N-methyltransferase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953120|gb|AEA26817.1| phospholipid N-methyltransferase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 219

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 49  ITVIEIGAGPGNLTQML---LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             V+E+G G G+++  +   L  GAR +  +E D      L+         LE+++ D 
Sbjct: 65  PVVVELGPGTGSVSAAIDARLPAGARHL-AVELDPVMARYLRRTRPG----LEVVEADV 118


>gi|239609792|gb|EEQ86779.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
          Length = 330

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            ++G  V+E+G+G G L+   L  LGAR V   ++D      +KD + Q+      I  D
Sbjct: 174 LIEGKNVVELGSGTGFLSMYCLKCLGARSVTATDRDPALISTIKDCAMQNDPSCNRISAD 233

Query: 104 A 104
            
Sbjct: 234 I 234


>gi|238022189|ref|ZP_04602615.1| hypothetical protein GCWU000324_02096 [Kingella oralis ATCC 51147]
 gi|237866803|gb|EEP67845.1| hypothetical protein GCWU000324_02096 [Kingella oralis ATCC 51147]
          Length = 222

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
             I+ ++A+         V+EIG G G  T +L  L A +V   + D+
Sbjct: 63  PKIVGRMAQGLALKKHERVLEIGTGSGYATAVLAKL-AHEVTTCDIDR 109


>gi|332286645|ref|YP_004418556.1| putative protein-L-isoaspartate O-methyltransferase [Pusillimonas
           sp. T7-7]
 gi|330430598|gb|AEC21932.1| putative protein-L-isoaspartate O-methyltransferase [Pusillimonas
           sp. T7-7]
          Length = 233

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++A+         V+EIG G G     LL   +++V  IE D +      +   +
Sbjct: 81  PKVEARLAQELQLKPTDCVLEIGTGSGY-QAALLARLSQQVTSIEVDSRLACFAVENLQR 139

Query: 93  HP-NRLEIIQDDA 104
           +    + +   DA
Sbjct: 140 NQVGNVSVETGDA 152


>gi|294638160|ref|ZP_06716416.1| RNA methyltransferase, RsmD family [Edwardsiella tarda ATCC 23685]
 gi|291088727|gb|EFE21288.1| RNA methyltransferase, RsmD family [Edwardsiella tarda ATCC 23685]
          Length = 204

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQ 101
           +  L     +++ AG G L    ++  A    ++E D+     L+  ++    +++ ++ 
Sbjct: 49  APILPDSRCLDVFAGSGALGFEAISRYAAHATLLEADRHVAAGLRKNAALLNCSQISVVH 108

Query: 102 DDALKVDFEKFFNISSPIRII 122
            DAL+           P +++
Sbjct: 109 TDALRF----LAQPGEPYQVV 125


>gi|241763266|ref|ZP_04761323.1| methyltransferase small [Acidovorax delafieldii 2AN]
 gi|241367541|gb|EER61828.1| methyltransferase small [Acidovorax delafieldii 2AN]
          Length = 382

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
           IG G G L  +L+  G + V+  E+D +     +D   +     +++   A        F
Sbjct: 210 IGTGTGVLAALLVRRGVQHVVATEQDPRALACARDNLQRLAVLPQVVLQQA------DLF 263

Query: 114 NISSPIRIIANLPY 127
            +     ++ N P+
Sbjct: 264 PVGRAPLVVCNPPW 277


>gi|261856076|ref|YP_003263359.1| RNA methyltransferase, TrmA family [Halothiobacillus neapolitanus
           c2]
 gi|261836545|gb|ACX96312.1| RNA methyltransferase, TrmA family [Halothiobacillus neapolitanus
           c2]
          Length = 442

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 39  IAESS---GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDISSQHP 94
           I ++        G  V+++ AG GN T  +    A KV  +E D+       +  ++   
Sbjct: 282 IVQALEWLDVQPGDHVLDLFAGLGNFTLPIA-RKAAKVTAVELDEHMVKRGAQSAAANGI 340

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
              E +  +  + D    +   +  R++ + P      ++ +          + S  
Sbjct: 341 TNTEHVIGNLFEPDPTHLWMQQTYDRVLLDPPRAGAEAMMPHIARFAPERIVYVSCH 397


>gi|170764074|ref|ZP_02631473.2| precorrin-6Y C5,15-methyltransferase , CbiT subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170662976|gb|EDT15659.1| precorrin-6Y C5,15-methyltransferase , CbiT subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 197

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 29  FLLDLNILK----------KI--AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIV 75
           F+ D   ++          +I              ++IG+G G++T Q    +    V  
Sbjct: 3   FIKDSEFIRGKCPMTKEDIRILTISKLDLDKDSNFLDIGSGTGSITIQASKFIEEGSVFS 62

Query: 76  IEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106
           IE+D++   + K+   +   N + +++ DA++
Sbjct: 63  IERDEEAIRVTKENLKKFNCNNVTLLEGDAIE 94


>gi|89901414|ref|YP_523885.1| methyltransferase small [Rhodoferax ferrireducens T118]
 gi|89346151|gb|ABD70354.1| methyltransferase small [Rhodoferax ferrireducens T118]
          Length = 409

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
           IG G G L+ +L   G  +++  ++D +     +D  +    RL +  +D +++     F
Sbjct: 237 IGTGTGVLSAVLARRGVNRIVATDQDPRALACARDNIA----RLNV--EDKVQLVQTDLF 290

Query: 114 NISSPIRIIANLPY 127
                  ++ N P+
Sbjct: 291 PEGQASLVVCNPPW 304


>gi|294634916|ref|ZP_06713435.1| cyclopropane-fatty-acyl-phospholipid synthase [Edwardsiella tarda
           ATCC 23685]
 gi|291091689|gb|EFE24250.1| cyclopropane-fatty-acyl-phospholipid synthase [Edwardsiella tarda
           ATCC 23685]
          Length = 381

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 7/90 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I        G  V++IG G G L   +      +V  I   Q+         +  P 
Sbjct: 154 LDLICRKLDLQPGQRVLDIGCGWGGLAAYMARHYDVQVTGITISQEQCAFASQRCADLPV 213

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            L +       +D+         I  +   
Sbjct: 214 TLRL-------MDYRDLDETFDRIVSVGMF 236


>gi|195114728|ref|XP_002001919.1| GI14517 [Drosophila mojavensis]
 gi|193912494|gb|EDW11361.1| GI14517 [Drosophila mojavensis]
          Length = 286

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           M   +  + ++  L    I+ +           N+  +   ++  L G  ++E+G G G 
Sbjct: 56  MAALHALNEIRVPLIRDGIVAR----------GNVNSRYINTTKVLSGQCILEVGCGAGL 105

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           LT+ L  LGA +V  I+  ++     K+  S     L
Sbjct: 106 LTEQLARLGA-QVTGIDLGEELIKTAKEHLSNCSAEL 141


>gi|163843695|ref|YP_001628099.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445]
 gi|263446883|sp|B0CHM8|RSMH_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163674418|gb|ABY38529.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445]
          Length = 346

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++     G  +++   G G  T+ +L  GA  VI I++D       + +  +
Sbjct: 20  PVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDRDPTAIEAGRAMEKE 78

Query: 93  HPNRLEIIQDDALKVD 108
            P RL +++     +D
Sbjct: 79  FPGRLNLVESRFSALD 94


>gi|307707731|ref|ZP_07644210.1| methyltransferase small domain superfamily [Streptococcus mitis
           NCTC 12261]
 gi|307616229|gb|EFN95423.1| methyltransferase small domain superfamily [Streptococcus mitis
           NCTC 12261]
          Length = 195

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK- 87
           FL +L + + I +    L    +++ G G G LT  L    A+ V +++  ++     + 
Sbjct: 19  FLANL-VYQAIEKQLDLLSDKEILDFGGGTGLLTLPLAKQ-AKSVTLVDISEKMLEQARL 76

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
               Q    ++ ++ D LK   ++ F+    + ++  + +++        +         
Sbjct: 77  KAEQQEIKNIQFLEQDLLKSPLKQEFD----LIVVCRVLHHMTDLDAALSLFHQHLRKDG 132

Query: 148 ESLTLLFQKE-----VGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
             L   F K        E    +K     G  SV +     A  +F
Sbjct: 133 RLLIADFTKTETNHHGFELTELEKQLIENGFSSVHSQILYSAEDLF 178


>gi|291166080|gb|EFE28126.1| S-adenosylmethionine-dependent methyltransferase [Filifactor alocis
           ATCC 35896]
          Length = 247

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            ++E+G G G +T+ LL  G  +V+ ++  ++   + ++   +  N++ +++ D   +DF
Sbjct: 39  HILELGCGSGIMTECLLNKG-YEVVGVDTSEEMLFLAQERLRRFGNKVILMEQDIENMDF 97

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           E  + I         L Y +    L N +S 
Sbjct: 98  E-IYEIDCIFSSNDTLNYILEQDKLKNLLSY 127


>gi|289705931|ref|ZP_06502307.1| methyltransferase, FkbM family [Micrococcus luteus SK58]
 gi|289557339|gb|EFD50654.1| methyltransferase, FkbM family [Micrococcus luteus SK58]
          Length = 409

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L+K+AE+     G  V+++GA  GN T  L      +VI +E D +    ++   S   N
Sbjct: 47  LEKMAEA--LSPGDVVVDVGANVGNHTLFLACTVGARVIAVEPDARLADAVRR--SAALN 102

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            +E    DA++V             +    P N+GTR +  
Sbjct: 103 GVE----DAVEVHACAAGAGEGEAVLREGDPANLGTRSIDR 139


>gi|264678534|ref|YP_003278441.1| tRNA (guanine-N(7)-)-methyltransferase [Comamonas testosteroni
           CNB-2]
 gi|262209047|gb|ACY33145.1| tRNA (guanine-N(7)-)-methyltransferase [Comamonas testosteroni
           CNB-2]
          Length = 244

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 12/124 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRL 97
           A ++   DG  ++EIG G G  T  +  +      +     +     +LK I  Q    +
Sbjct: 64  AAAAYGRDGKLILEIGFGMGEATAHIARVRPDDNFLCCEVHEPGVGALLKRIGEQEIENI 123

Query: 98  EIIQDDALKV----------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            I+Q DA++V          D    F      +   N    I + L+    +      + 
Sbjct: 124 RILQHDAVEVIDNMLPEASIDGVHIFFPDPWHKKKHNKRRLIQSPLIAKLAARIKPGGYI 183

Query: 148 ESLT 151
              T
Sbjct: 184 HCAT 187


>gi|225374779|ref|ZP_03752000.1| hypothetical protein ROSEINA2194_00399 [Roseburia inulinivorans DSM
           16841]
 gi|225213348|gb|EEG95702.1| hypothetical protein ROSEINA2194_00399 [Roseburia inulinivorans DSM
           16841]
          Length = 567

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           K I           V+EIG G G +T +L     + V  +E  ++          +  N 
Sbjct: 68  KNILNWYDFKKDSDVLEIGCGMGAVTSVLCD-NCKTVTAVELSKRRATATLLRCREKEN- 125

Query: 97  LEIIQDDALKVDFEKFFN 114
           LEII  +   + F+K F+
Sbjct: 126 LEIIVGNLNDIQFDKKFD 143


>gi|167627683|ref|YP_001678183.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597684|gb|ABZ87682.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 253

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I E         +++IG G G LT  +   GA  ++ I+   Q    L      +PN ++
Sbjct: 26  IVELLSPQKDEKILDIGCGTGELTNKIKLQGA-SIVGIDVSNQM---LNQAKKNYPN-IQ 80

Query: 99  IIQDDA---LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
            I+ DA   L  + E F  + S   +   L      + +   +  +
Sbjct: 81  FIEADAQQDLPFNSEDFDAVFSNAALHWMLNPTAVIKNINKILKKN 126


>gi|110801395|ref|YP_695877.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium perfringens ATCC 13124]
 gi|169343997|ref|ZP_02864988.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium perfringens C str. JGS1495]
 gi|170763928|ref|ZP_02635279.2| precorrin-6Y C5,15-methyltransferase , CbiT subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|182420496|ref|ZP_02642764.2| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium perfringens NCTC 8239]
 gi|182624254|ref|ZP_02952040.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium perfringens D str. JGS1721]
 gi|110676042|gb|ABG85029.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium perfringens ATCC 13124]
 gi|169297905|gb|EDS80000.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium perfringens C str. JGS1495]
 gi|170712291|gb|EDT24473.1| precorrin-6Y C5,15-methyltransferase , CbiT subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|177910668|gb|EDT73036.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium perfringens D str. JGS1721]
 gi|182380839|gb|EDT78318.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium perfringens NCTC 8239]
          Length = 197

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 29  FLLDLNILK----------KI--AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIV 75
           F+ D   ++          +I              ++IG+G G++T Q    +    V  
Sbjct: 3   FIKDSEFIRGKCPMTKEDIRILTISKLDLDKDSNFLDIGSGTGSITIQASKFIEEGSVFS 62

Query: 76  IEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106
           IE+D++   + K+   +   N + +++ DA++
Sbjct: 63  IERDEEAIRVTKENLKKFNCNNVTLLEGDAIE 94


>gi|77166075|ref|YP_344600.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosococcus oceani ATCC 19707]
 gi|254436291|ref|ZP_05049798.1| Protein-L-isoaspartate O-methyltransferase superfamily
           [Nitrosococcus oceani AFC27]
 gi|76884389|gb|ABA59070.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosococcus oceani ATCC 19707]
 gi|207089402|gb|EDZ66674.1| Protein-L-isoaspartate O-methyltransferase superfamily
           [Nitrosococcus oceani AFC27]
          Length = 212

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 26  GQNFLLDLNILK-KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           GQ  L    I++ ++ ++    +  +V+EIG G G LT ++  L A  VI ++     FP
Sbjct: 57  GQVML--PPIIEGRLLQALDLKESESVLEIGTGTGYLTTVMAGL-AGHVISVDI----FP 109

Query: 85  ILKDISSQHPNRLEIIQDDA 104
            L+    Q    + +   DA
Sbjct: 110 ELRRFPEQLLANISLEVGDA 129


>gi|291447692|ref|ZP_06587082.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291350639|gb|EFE77543.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 257

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +       V+++  G G++T  LL          ++ D     I +       +R+  + 
Sbjct: 45  AVVGPEPRVLDLACGTGSITDRLLKRFPNATSTGVDLDPALLAIARGTF-DSDDRVTFVT 103

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
            D    D+ K    +S   ++        T    +W+ ++     +  L  L 
Sbjct: 104 ADLKDADWTKRLPHTSYDAVL--------TATALHWLHSEPLATLYGQLCGLV 148


>gi|239944220|ref|ZP_04696157.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239990676|ref|ZP_04711340.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
          Length = 253

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +       V+++  G G++T  LL          ++ D     I +       +R+  + 
Sbjct: 41  AVVGPEPRVLDLACGTGSITDRLLKRFPNATSTGVDLDPALLAIARGTF-DSDDRVTFVT 99

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
            D    D+ K    +S   ++        T    +W+ ++     +  L  L 
Sbjct: 100 ADLKDADWTKRLPHTSYDAVL--------TATALHWLHSEPLATLYGQLCGLV 144


>gi|224372530|ref|YP_002606902.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
 gi|223589616|gb|ACM93352.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
          Length = 192

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDAL 105
              T +E+ +G G++    ++ GA+K   +EKD +   +LK  I S  P + EII  D+ 
Sbjct: 46  PDSTWVEMFSGVGSIGLEAISRGAKKAYFLEKDPEAARVLKKNIDSMDPEKCEIILGDSF 105

Query: 106 KVDF---EKFFNISSPIRIIANLPYNI 129
           +  +   EK            + P+ I
Sbjct: 106 ETVWDVIEKLKRDKDRAFFYFDPPFAI 132


>gi|221066869|ref|ZP_03542974.1| tRNA (guanine-N(7)-)-methyltransferase [Comamonas testosteroni
           KF-1]
 gi|220711892|gb|EED67260.1| tRNA (guanine-N(7)-)-methyltransferase [Comamonas testosteroni
           KF-1]
          Length = 244

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 12/124 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRL 97
           A ++   DG  ++EIG G G  T  +  +      +     +     +LK I  Q    +
Sbjct: 64  AAAAYGRDGKLILEIGFGMGEATAHIARVRPDDNFLCCEVHEPGVGALLKRIGEQEIENI 123

Query: 98  EIIQDDALKV----------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            I+Q DA++V          D    F      +   N    I + L+    +      + 
Sbjct: 124 RILQHDAVEVIDNMLPEASIDGVHIFFPDPWHKKKHNKRRLIQSPLIAKLAARIKPGGYI 183

Query: 148 ESLT 151
              T
Sbjct: 184 HCAT 187


>gi|311742905|ref|ZP_07716713.1| cyclopropane-fatty-acyl-phospholipid synthase [Aeromicrobium
           marinum DSM 15272]
 gi|311313585|gb|EFQ83494.1| cyclopropane-fatty-acyl-phospholipid synthase [Aeromicrobium
           marinum DSM 15272]
          Length = 409

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           +  I + +   +G  V+EIG G G L       GA  V  I   Q+   + +    ++  
Sbjct: 182 IDGILDQAHVGEGTRVLEIGTGWGALAIRAAQRGAH-VTTITISQEQAALAQQRIDAAGL 240

Query: 94  PNRLEIIQDD 103
            +R+++   D
Sbjct: 241 TDRVDLRLQD 250


>gi|229167689|ref|ZP_04295423.1| Ribosomal RNA adenine dimethylase [Bacillus cereus AH621]
 gi|228615750|gb|EEK72841.1| Ribosomal RNA adenine dimethylase [Bacillus cereus AH621]
          Length = 185

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 5/128 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI 89
              + K++           +IE G G G  T+ L+     +  +++IE + QF+ IL+  
Sbjct: 24  SKQLAKQMVAPINFEQAKCIIEYGPGTGVFTEQLIQHKHNETVLLIIENNVQFYRILQKR 83

Query: 90  SSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            S   N + II D A   +   +K+        I      ++        +         
Sbjct: 84  YSHMEN-VYIIHDSAEYTEKYVQKYKITQVDYIISGLPFTSLSLDTSTKILQVTKEVLGE 142

Query: 148 ESLTLLFQ 155
           E   + FQ
Sbjct: 143 EGKFITFQ 150


>gi|225428111|ref|XP_002280693.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 356

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 63/184 (34%), Gaps = 17/184 (9%)

Query: 25  MGQNFLLDLNILKK------------IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
            GQ+F    ++  K             A+  G   G  V++ G G G   + +       
Sbjct: 89  WGQSFHFSPSVAGKSHRDATRVHEEMAADLLGIRAGDRVLDAGCGVGGPMRAIARHSGAN 148

Query: 73  VIVIEKDQQFF--PILKDISSQHPNRLEIIQDDALKVDFEK-FFNISSPIRIIANLPY-- 127
           V+ I  ++       L +  +   ++ E++  + L++ F    F+ +  I    + P   
Sbjct: 149 VVGITINEYQVNRAHLHNKKAGLESQCEVVCGNFLEMPFPDNSFDGAYSIEATCHAPKLE 208

Query: 128 NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            + + +         +  +    T L++++  E +   +       L  L  +R    + 
Sbjct: 209 EVYSEIFRVLKPGSMYVSYEWVTTELYREDDAEHVEIIQGIERGDALPGLRSYRDIVEIA 268

Query: 188 FDIS 191
             + 
Sbjct: 269 RKVG 272


>gi|120404406|ref|YP_954235.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957224|gb|ABM14229.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Mycobacterium vanbaalenii PYR-1]
          Length = 395

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 29  FLLDLNILKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQF 82
           F  D  + K++  ++         G  + ++GAG G+++      G   + I  E+D+  
Sbjct: 219 FAHDGQLTKQMIRAATLAALAPRPGELLWDVGAGSGSISIEWCRSGPGCRAIAFERDEAR 278

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              + + +  H   +E+      + D  + F+ S P   +
Sbjct: 279 RARITENAVAHGAGVEV------RFDAPESFDSSPPPAAV 312


>gi|56478294|ref|YP_159883.1| hypothetical protein ebA5030 [Aromatoleum aromaticum EbN1]
 gi|56314337|emb|CAI08982.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 384

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 40  AESSGSLDGITVI--EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPN 95
              +    G   +  +IG G G L  +L   G R+++  ++D +      +  S+     
Sbjct: 196 VAEAPLPAGAEALAFDIGTGSGVLAAVLARRGVRRIVATDQDPRALACAAENLSRLGFAT 255

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++E++  D         F       ++ N P+
Sbjct: 256 QVEVVSAD--------LFPEGRAPLVVCNPPW 279


>gi|52696100|pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate O-
           Methyltransferase Homologue From Sulfolobus Tokodaii
 gi|52696101|pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate O-
           Methyltransferase Homologue From Sulfolobus Tokodaii
 gi|52696102|pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate O-
           Methyltransferase Homologue From Sulfolobus Tokodaii
 gi|52696103|pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate O-
           Methyltransferase Homologue From Sulfolobus Tokodaii
          Length = 231

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +      G  V+EIG G G  T ++  +   KV+ +E +++ +     + S + N +++I
Sbjct: 64  DELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKXYNYASKLLS-YYNNIKLI 121

Query: 101 QDD 103
             D
Sbjct: 122 LGD 124


>gi|299533378|ref|ZP_07046760.1| Cyclopropane-fatty-acyl-phospholipid synthase [Comamonas
           testosteroni S44]
 gi|298718584|gb|EFI59559.1| Cyclopropane-fatty-acyl-phospholipid synthase [Comamonas
           testosteroni S44]
          Length = 433

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPN 95
           + IA       G  V++IG G G L++ L  + GA  V  I    +     +  +SQ   
Sbjct: 168 RHIAAKLLIEPGQRVLDIGCGWGGLSRYLAEVGGAGHVTGITLSTEQLAGAQSRASQS-- 225

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIAN--LPYNIGTRL 133
               I  + L+   E + +   P   I +  +  ++GTR 
Sbjct: 226 ----IHGERLEYRLEDYRDTQGPFERIVSVGMFEHVGTRF 261


>gi|256827002|ref|YP_003150961.1| putative methyltransferase [Cryptobacterium curtum DSM 15641]
 gi|256583145|gb|ACU94279.1| putative methyltransferase [Cryptobacterium curtum DSM 15641]
          Length = 188

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRL 97
           IA + G  D   V++  AG G L    L+ GAR   + E+D+     +K+  +    +  
Sbjct: 36  IASARGGWDDAIVLDAFAGSGALAIEALSRGARWACLCEQDRAALQAIKENTAFITDDSF 95

Query: 98  EIIQDDALKVDFEKFFNISSPIRII-ANLPYNIGTRLLFNWISA 140
           +I++ D L        +  +P  I+  + PY +  RLL   +  
Sbjct: 96  QIVRGDVL---GRIVVHPPTPYDIVFLDPPYALDARLLATLLQR 136


>gi|219558091|ref|ZP_03537167.1| RNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289570231|ref|ZP_06450458.1| RNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289543985|gb|EFD47633.1| RNA methyltransferase [Mycobacterium tuberculosis T17]
          Length = 273

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISS-- 91
             +I        G  V+E GAG G LT  LL     A +VI  E+        +   S  
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC 147

Query: 92  --QHPNRLEIIQDD 103
             Q P+   ++  D
Sbjct: 148 YGQPPDNWRLVVSD 161


>gi|148559451|ref|YP_001259332.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840]
 gi|263446879|sp|A5VRI5|RSMH_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148370708|gb|ABQ60687.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840]
          Length = 346

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++     G  +++   G G  T+ +L  GA  VI I++D       + +  +
Sbjct: 20  PVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDRDPTAIEAGRAMEKE 78

Query: 93  HPNRLEIIQDDALKVD 108
            P RL +++     +D
Sbjct: 79  FPGRLNLVESRFSALD 94


>gi|110834057|ref|YP_692916.1| hypothetical protein ABO_1196 [Alcanivorax borkumensis SK2]
 gi|110647168|emb|CAL16644.1| hypothetical protein ABO_1196 [Alcanivorax borkumensis SK2]
          Length = 211

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 19/161 (11%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           S       +++IG G G L+         +V  ++ D   +P L   ++ +  ++  +Q 
Sbjct: 60  SKVTADQHLMDIGCGWGPLSIFSAKRFGCQVTAVDADPDVYPYLDLHATINKVQVTPLQT 119

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
              K+   +  N+   +       ++  T +L+N I                +  V + +
Sbjct: 120 RFEKLTKARLANV-DIVVGADICFWDELTPVLYNLIRR------------SLRAGVKQIV 166

Query: 163 TAQKNSPHYGRLSVLTGWRTKATMM--FDISPHVFFPSPKV 201
            A      +  L+       +A  +    +      P P  
Sbjct: 167 IADPGRSPFYALAEK----CEAGKLNSRVVERRTQTPKPLC 203


>gi|108797299|ref|YP_637496.1| ferredoxin [Mycobacterium sp. MCS]
 gi|119866384|ref|YP_936336.1| ferredoxin [Mycobacterium sp. KMS]
 gi|108767718|gb|ABG06440.1| ferredoxin [Mycobacterium sp. MCS]
 gi|119692473|gb|ABL89546.1| ferredoxin [Mycobacterium sp. KMS]
          Length = 346

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 19/95 (20%)

Query: 25  MGQNFLLDLNILKKIAESS--------GSLDGITVIEIGAGPG-----NLTQMLLTLGAR 71
            G N+L D  +  ++ E+         G LD   V+  G G G     ++ +  L +G+ 
Sbjct: 88  YGSNWLCDNVVAGQVIEALPPSGVFTPGDLDRDLVLWAG-GSGITPVMSILKSALAVGSG 146

Query: 72  KVIVI--EKDQQ---FFPILKDISSQHPNRLEIIQ 101
           +V+++   +D++   F   L+D++++HP+RL ++ 
Sbjct: 147 RVVLVYANRDERSVIFAAELRDLTARHPDRLTVVH 181


>gi|302389475|ref|YP_003825296.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200103|gb|ADL07673.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
          Length = 314

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TVI++G G G L+     LGA KV+ I+KD+    + ++   ++     +E+I+ 
Sbjct: 170 IEGGETVIDVGCGSGILSIAAAKLGAGKVLAIDKDEVAVKVARENIKRNDTTQAVEVIKG 229

Query: 103 DALKV 107
           + L  
Sbjct: 230 EGLDC 234


>gi|167630723|ref|YP_001681222.1| methyltransferase, putative [Heliobacterium modesticaldum Ice1]
 gi|167593463|gb|ABZ85211.1| methyltransferase, putative [Heliobacterium modesticaldum Ice1]
          Length = 250

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQDDALKV 107
           TV+++  G G +T+ LL  G R V+ ++       +  D   ++  R  L ++  D  ++
Sbjct: 38  TVLDLACGTGAITERLLKRGYR-VVGVDLSPDMLAVCADRHEEYLERGQLLLLNQDMRRL 96

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           ++ +   + + +  +  L Y      L   +S 
Sbjct: 97  EYPR--QVEAIVCFLDGLNYLASVEDLTQTLSR 127


>gi|154304913|ref|XP_001552860.1| hypothetical protein BC1G_09042 [Botryotinia fuckeliana B05.10]
 gi|150853904|gb|EDN29096.1| hypothetical protein BC1G_09042 [Botryotinia fuckeliana B05.10]
          Length = 2477

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 58/175 (33%), Gaps = 25/175 (14%)

Query: 32   DLNILKKIAESSG----SLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKD-----Q 80
            +   + +IA   G        + +IE+GAG G+ T  +L       +V+  E D      
Sbjct: 1415 NARCIAQIAAYMGELGRLNPNMKIIEVGAGTGSATLPVLQALQAPNRVLASEYDFTDISP 1474

Query: 81   QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             FFP  +++ S   N           +   K  N+          P +    +  N + A
Sbjct: 1475 GFFPAARELLSDFEN-----------IMQYKTLNVEKTAEENGFEPNSYDVLIASNVLHA 1523

Query: 141  DTWPPFWESLTLLFQKEVGERITAQK--NSPHYG-RLSVLTGWRTKATMMFDISP 192
                           +  G+ I  +   N PHYG     L GW         +SP
Sbjct: 1524 TPCIDVVLENVRSLLRPGGKLILMEPTENLPHYGLVFGSLAGWWAGVDEGRTLSP 1578


>gi|40787346|gb|AAR90247.1| polyketide synthase [Botryotinia fuckeliana]
          Length = 2544

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 58/175 (33%), Gaps = 25/175 (14%)

Query: 32   DLNILKKIAESSG----SLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKD-----Q 80
            +   + +IA   G        + +IE+GAG G+ T  +L       +V+  E D      
Sbjct: 1415 NARCIAQIAAYMGELGRLNPNMKIIEVGAGTGSATLPVLQALQAPNRVLASEYDFTDISP 1474

Query: 81   QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             FFP  +++ S   N           +   K  N+          P +    +  N + A
Sbjct: 1475 GFFPAARELLSDFEN-----------IMQYKTLNVEKTAEENGFEPNSYDVLIASNVLHA 1523

Query: 141  DTWPPFWESLTLLFQKEVGERITAQK--NSPHYG-RLSVLTGWRTKATMMFDISP 192
                           +  G+ I  +   N PHYG     L GW         +SP
Sbjct: 1524 TPCIDVVLENVRSLLRPGGKLILMEPTENLPHYGLVFGSLAGWWAGVDEGRTLSP 1578


>gi|268579357|ref|XP_002644661.1| Hypothetical protein CBG14642 [Caenorhabditis briggsae]
          Length = 370

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 7/120 (5%)

Query: 39  IAESSGSLDGIT----VIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS-Q 92
           I  +   +D       ++EIG G G+L   L +L  +  +  +E D     + +   +  
Sbjct: 148 IVSALSLVDSDNDGKAILEIGLGGGSLDMFLHSLNPKLNITAVELDPTVVSMAQKWFNVV 207

Query: 93  HPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
           +      I  D L+       N     +  +     +                  + S+ 
Sbjct: 208 NDGTRRTINADGLEFVKRAGRNQEKYDVVFLDACDSSKSIPCPSKLFRTPEMYSSFSSIV 267


>gi|37521268|ref|NP_924645.1| protein-L-isoaspartate O-methyltransferase [Gloeobacter violaceus
           PCC 7421]
 gi|35212265|dbj|BAC89640.1| protein-L-isoaspartate O-methyltransferase [Gloeobacter violaceus
           PCC 7421]
          Length = 234

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  ++E++    G  V+EIG G G    +L  +GA +V  +E   +     +    +
Sbjct: 83  PFIVAYMSEAARITPGAKVLEIGTGSGYQAAVLAEMGA-EVYTVEIVPELAKRAERTLEE 141

Query: 93  HPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
              R + +   D  +   +   +      ++   P  I   L+   
Sbjct: 142 LGYRSVRVRSGDGYQGWPQ---HAPFDAIVVTAAPERIPQPLIDQL 184


>gi|323141894|ref|ZP_08076755.1| ribosomal protein L11 methyltransferase [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413641|gb|EFY04499.1| ribosomal protein L11 methyltransferase [Phascolarctobacterium sp.
           YIT 12067]
          Length = 311

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                TV ++G G G L      LGA+ V  ++ D     + K+  + +    ++E+ + 
Sbjct: 171 ITPDSTVFDVGTGSGILAIAAAMLGAKSVKAVDIDGVAVRVAKENVADNGLSEQIEVREG 230

Query: 103 DALK 106
           D L 
Sbjct: 231 DLLH 234


>gi|294852766|ref|ZP_06793439.1| methylase MraW [Brucella sp. NVSL 07-0026]
 gi|294821355|gb|EFG38354.1| methylase MraW [Brucella sp. NVSL 07-0026]
          Length = 346

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++     G  +++   G G  T+ +L  GA  VI I++D       + +  +
Sbjct: 20  PVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDRDPTAIEAGRAMEKE 78

Query: 93  HPNRLEIIQDDALKVD 108
            P RL +++     +D
Sbjct: 79  FPGRLNLVESRFSALD 94


>gi|320104237|ref|YP_004179828.1| protein-L-isoaspartate O-methyltransferase [Isosphaera pallida ATCC
           43644]
 gi|319751519|gb|ADV63279.1| protein-L-isoaspartate O-methyltransferase [Isosphaera pallida ATCC
           43644]
          Length = 315

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 21/137 (15%)

Query: 16  HYKIIPKKYM-------------GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
            ++ +P+K               GQ  +   +I+  + ++        V E+G G G   
Sbjct: 102 RHRFLPRKSWPLAYEDTALPIGEGQT-ISSPSIVAYMTQALEPDPEDVVYEVGTGSGY-Q 159

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIR 120
             +L+   + V  +E  +           +  + N    +  D      E          
Sbjct: 160 AAILSRLVKAVYSVEIHRSLGETAARTLKELGYDNVFTRV-GDGYAGWPEA---APFDAV 215

Query: 121 IIANLPYNIGTRLLFNW 137
           I+   P NI   L+   
Sbjct: 216 IVTCSPENIPPPLIEQL 232


>gi|311234828|gb|ADP87682.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Desulfovibrio vulgaris RCH1]
          Length = 623

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKD-QQFFPILKDISSQHPNRLE 98
            +       TV ++GAG G ++     + +R  V  +E+D  +   + ++        +E
Sbjct: 452 AALRVNPADTVWDVGAGSGAMSVECAAVASRGSVWAVERDAARVVCVEENRRRMGAANIE 511

Query: 99  IIQDDALKVDFEKFFNISSPIRII 122
           ++  DA         ++ +P R+ 
Sbjct: 512 VVHGDA----PACLASLPTPDRVF 531


>gi|305431703|ref|ZP_07400872.1| ribosomal RNA adenine dimethylase domain protein [Campylobacter
          coli JV20]
 gi|304445298|gb|EFM37942.1| ribosomal RNA adenine dimethylase domain protein [Campylobacter
          coli JV20]
          Length = 185

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI 89
                  ++EIG G G  T+ +L    +K     IE ++     LK  
Sbjct: 31 INLRQANYIVEIGPGTGVFTENILKYKNKKAQFFAIEINKNMADKLKRK 79


>gi|294495955|ref|YP_003542448.1| methyltransferase type 11 [Methanohalophilus mahii DSM 5219]
 gi|292666954|gb|ADE36803.1| Methyltransferase type 11 [Methanohalophilus mahii DSM 5219]
          Length = 161

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGA---RKVIVIEK-DQQFFPILKDISSQHPN 95
            +S     G TV+E+G G G L   LL        K+I ++  D+      K +   +  
Sbjct: 42  IDSLDIKKGDTVVELGCGTG-LNFPLLQQKIGKEGKIIGVDITDKMLEKAEKWVKKNNWE 100

Query: 96  RLEIIQDDALKVDFEK 111
            +E++  D  + +  K
Sbjct: 101 NVELVHCDVSQYNIPK 116


>gi|256113992|ref|ZP_05454775.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 3 str.
           Ether]
 gi|265995335|ref|ZP_06107892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766448|gb|EEZ12237.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 3 str. Ether]
          Length = 346

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++     G  +++   G G  T+ +L  GA  VI I++D       + +  +
Sbjct: 20  PVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDRDPTAIEAGRAMEKE 78

Query: 93  HPNRLEIIQDDALKVD 108
            P RL +++     +D
Sbjct: 79  FPGRLNLVESRFSALD 94


>gi|237815839|ref|ZP_04594836.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A]
 gi|237789137|gb|EEP63348.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A]
 gi|326409463|gb|ADZ66528.1| Bacterial methyltransferase [Brucella melitensis M28]
 gi|326539169|gb|ADZ87384.1| S-adenosyl-methyltransferase MraW [Brucella melitensis M5-90]
          Length = 347

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++     G  +++   G G  T+ +L  GA  VI I++D       + +  +
Sbjct: 21  PVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDRDPTAIEAGRAMEKE 79

Query: 93  HPNRLEIIQDDALKVD 108
            P RL +++     +D
Sbjct: 80  FPGRLNLVESRFSALD 95


>gi|222478986|ref|YP_002565223.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
 gi|222451888|gb|ACM56153.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
          Length = 255

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 30  LLDLNILKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           L+D    + +  + G   +G  V+E+  G G  T ML   GA  ++ I+  ++     + 
Sbjct: 27  LIDQREKEAVLSALGPIEEGHRVLEVACGTGRFTTMLADQGAH-IVGIDISREMLEQGRQ 85

Query: 89  ISSQ--HPNRLEIIQDDALKVDFEK 111
            +++    + +E ++ DA ++ F  
Sbjct: 86  KAAEAGLSDTVEFVRGDASRLPFPD 110


>gi|254410696|ref|ZP_05024474.1| Methyltransferase domain family [Microcoleus chthonoplastes PCC
           7420]
 gi|196182051|gb|EDX77037.1| Methyltransferase domain family [Microcoleus chthonoplastes PCC
           7420]
          Length = 278

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 66/218 (30%), Gaps = 46/218 (21%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVI 76
              KK   Q+        ++I        G  V+++G G G  + M         +VI +
Sbjct: 22  HFAKK---QH-------RQQIVNDLQLKPGDWVLDLGCGAGLWSSMFAEKVKPNGRVIGV 71

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           + D ++    +    Q+P +      D ++   +   N+S                  F+
Sbjct: 72  DIDSRWIEYGEQNLEQNPLK------DMIEYRVDDLRNLSF-------------APETFD 112

Query: 137 WISADTWPPFWESLTLLF--QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            +      P+   +  +   QK++ ++   +     +               MF + P  
Sbjct: 113 LVFISGCSPYLADIHAVLAQQKQITKK-CGRIADRSWD------------DGMFIVHPIS 159

Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232
            + S KV   V        P         + +   F +
Sbjct: 160 PYLSGKVMLAVAQAFEERTPEQYFDNYFGRKSHSIFRQ 197


>gi|46581153|ref|YP_011961.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450574|gb|AAS97221.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Desulfovibrio vulgaris str. Hildenborough]
          Length = 486

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKD-QQFFPILKDISSQHPNRLE 98
            +       TV ++GAG G ++     + +R  V  +E+D  +   + ++        +E
Sbjct: 315 AALRVNPADTVWDVGAGSGAMSVECAAVASRGSVWAVERDAARVVCVEENRRRMGAANIE 374

Query: 99  IIQDDALKVDFEKFFNISSPIRII 122
           ++  DA         ++ +P R+ 
Sbjct: 375 VVHGDA----PACLASLPTPDRVF 394


>gi|17986854|ref|NP_539488.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str.
           16M]
 gi|23502310|ref|NP_698437.1| S-adenosyl-methyltransferase MraW [Brucella suis 1330]
 gi|62290332|ref|YP_222125.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 1 str.
           9-941]
 gi|82700256|ref|YP_414830.1| S-adenosyl-methyltransferase MraW [Brucella melitensis biovar
           Abortus 2308]
 gi|161619387|ref|YP_001593274.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365]
 gi|189024565|ref|YP_001935333.1| S-adenosyl-methyltransferase MraW [Brucella abortus S19]
 gi|225852921|ref|YP_002733154.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457]
 gi|254694123|ref|ZP_05155951.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697775|ref|ZP_05159603.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702160|ref|ZP_05163988.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 5 str. 513]
 gi|254704697|ref|ZP_05166525.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 3 str. 686]
 gi|254708111|ref|ZP_05169939.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis
           M163/99/10]
 gi|254710480|ref|ZP_05172291.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis B2/94]
 gi|254730664|ref|ZP_05189242.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 4 str. 292]
 gi|256031974|ref|ZP_05445588.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis
           M292/94/1]
 gi|256045069|ref|ZP_05447970.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256160173|ref|ZP_05457867.1| S-adenosyl-methyltransferase MraW [Brucella ceti M490/95/1]
 gi|256255379|ref|ZP_05460915.1| S-adenosyl-methyltransferase MraW [Brucella ceti B1/94]
 gi|256263598|ref|ZP_05466130.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369855|ref|YP_003107366.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915]
 gi|260169111|ref|ZP_05755922.1| S-adenosyl-methyltransferase MraW [Brucella sp. F5/99]
 gi|260546874|ref|ZP_05822613.1| bacterial methyltransferase [Brucella abortus NCTC 8038]
 gi|260565332|ref|ZP_05835816.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260566056|ref|ZP_05836526.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260758381|ref|ZP_05870729.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 4 str. 292]
 gi|260762207|ref|ZP_05874550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|261214424|ref|ZP_05928705.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 3 str. Tulya]
 gi|261222582|ref|ZP_05936863.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti B1/94]
 gi|261315615|ref|ZP_05954812.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M163/99/10]
 gi|261318052|ref|ZP_05957249.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis B2/94]
 gi|261752731|ref|ZP_05996440.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 5 str. 513]
 gi|261755390|ref|ZP_05999099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 3 str. 686]
 gi|261758618|ref|ZP_06002327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. F5/99]
 gi|265989084|ref|ZP_06101641.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M292/94/1]
 gi|265991497|ref|ZP_06104054.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265998547|ref|ZP_06111104.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M490/95/1]
 gi|54037823|sp|P65428|RSMH_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54041486|sp|P65427|RSMH_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68565395|sp|Q57C70|RSMH_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909188|sp|Q2YM63|RSMH_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445807|sp|A9M698|RSMH_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445814|sp|B2S6R2|RSMH_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447062|sp|C0RE78|RSMH_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|17982491|gb|AAL51752.1| sam-dependent methytransferase [Brucella melitensis bv. 1 str. 16M]
 gi|23348287|gb|AAN30352.1| conserved hypothetical protein TIGR00006 [Brucella suis 1330]
 gi|62196464|gb|AAX74764.1| conserved hypothetical protein TIGR00006 [Brucella abortus bv. 1
           str. 9-941]
 gi|82616357|emb|CAJ11414.1| Bacterial methyltransferase [Brucella melitensis biovar Abortus
           2308]
 gi|161336198|gb|ABX62503.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365]
 gi|189020137|gb|ACD72859.1| Bacterial methyltransferase [Brucella abortus S19]
 gi|225641286|gb|ACO01200.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457]
 gi|256000018|gb|ACU48417.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915]
 gi|260095924|gb|EEW79801.1| bacterial methyltransferase [Brucella abortus NCTC 8038]
 gi|260151400|gb|EEW86494.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155574|gb|EEW90654.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260668699|gb|EEX55639.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 4 str. 292]
 gi|260672639|gb|EEX59460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260916031|gb|EEX82892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 3 str. Tulya]
 gi|260921166|gb|EEX87819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti B1/94]
 gi|261297275|gb|EEY00772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis B2/94]
 gi|261304641|gb|EEY08138.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M163/99/10]
 gi|261738602|gb|EEY26598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. F5/99]
 gi|261742484|gb|EEY30410.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 5 str. 513]
 gi|261745143|gb|EEY33069.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 3 str. 686]
 gi|262553171|gb|EEZ09005.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M490/95/1]
 gi|263002281|gb|EEZ14856.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093648|gb|EEZ17653.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661281|gb|EEZ31542.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M292/94/1]
          Length = 346

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++     G  +++   G G  T+ +L  GA  VI I++D       + +  +
Sbjct: 20  PVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDRDPTAIEAGRAMEKE 78

Query: 93  HPNRLEIIQDDALKVD 108
            P RL +++     +D
Sbjct: 79  FPGRLNLVESRFSALD 94


>gi|254714473|ref|ZP_05176284.1| S-adenosyl-methyltransferase MraW [Brucella ceti M644/93/1]
 gi|254717371|ref|ZP_05179182.1| S-adenosyl-methyltransferase MraW [Brucella ceti M13/05/1]
 gi|261219203|ref|ZP_05933484.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M13/05/1]
 gi|261322263|ref|ZP_05961460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M644/93/1]
 gi|260924292|gb|EEX90860.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M13/05/1]
 gi|261294953|gb|EEX98449.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M644/93/1]
          Length = 346

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++     G  +++   G G  T+ +L  GA  VI I++D       + +  +
Sbjct: 20  PVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDRDPTAIEAGRAMEKE 78

Query: 93  HPNRLEIIQDDALKVD 108
            P RL +++     +D
Sbjct: 79  FPGRLNLVESRFSALD 94


>gi|254689633|ref|ZP_05152887.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 6 str. 870]
 gi|256257883|ref|ZP_05463419.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 9 str. C68]
 gi|260755162|ref|ZP_05867510.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 6 str. 870]
 gi|260884175|ref|ZP_05895789.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 9 str. C68]
 gi|297248720|ref|ZP_06932438.1| methylase MraW [Brucella abortus bv. 5 str. B3196]
 gi|260675270|gb|EEX62091.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 6 str. 870]
 gi|260873703|gb|EEX80772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 9 str. C68]
 gi|297175889|gb|EFH35236.1| methylase MraW [Brucella abortus bv. 5 str. B3196]
          Length = 346

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++     G  +++   G G  T+ +L  GA  VI I++D       + +  +
Sbjct: 20  PVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDRDPTAIEAGRAMEKE 78

Query: 93  HPNRLEIIQDDALKVD 108
            P RL +++     +D
Sbjct: 79  FPGRLNLVESRFSALD 94


>gi|219852193|ref|YP_002466625.1| Methyltransferase type 11 [Methanosphaerula palustris E1-9c]
 gi|219546452|gb|ACL16902.1| Methyltransferase type 11 [Methanosphaerula palustris E1-9c]
          Length = 298

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 70/219 (31%), Gaps = 39/219 (17%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEI 99
           +S    DG  V++IGAGPG     L   G  KV V+E       +L+  I  +    L +
Sbjct: 78  DSMSIPDGSRVLDIGAGPGTYAIPLAARGC-KVTVVEPSPVMRELLEARIQEEKIENLVV 136

Query: 100 IQDDALKVDFEKFFNISSPI-RIIANLPYNI---------------GTRLLFNWISADTW 143
           I     + +  +   +  P   +IA+    +               GT  LF ++    W
Sbjct: 137 IPK---RWEDVRVGELGEPFDAVIASYSLTMMDIGEALEKMNACCRGTVHLFWFLLPPAW 193

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS---PK 200
                 L       +          P    L        +  +  ++     FP      
Sbjct: 194 VQVNRDLWPFLHGGIF------PGEPTADWL---WQVLYEMEIYANLQVDTRFPPSRYAN 244

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
           V   V  F+  LN   C   + ++  +  F      LRQ
Sbjct: 245 VDEAVEEFLQRLN---CTTPAQEETVRNYFQT---MLRQ 277


>gi|170088905|ref|XP_001875675.1| cyclopropane-fatty-acyl-phospholipid synthase [Laccaria bicolor
           S238N-H82]
 gi|164648935|gb|EDR13177.1| cyclopropane-fatty-acyl-phospholipid synthase [Laccaria bicolor
           S238N-H82]
          Length = 369

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 74/224 (33%), Gaps = 35/224 (15%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI---VIEKDQQFFP--ILKDIS 90
           L+ I + +G  DG  V+EIG+G G++   +        +    +   QQ      ++ + 
Sbjct: 131 LQHIIKKAGIRDGNRVLEIGSGWGSMAMTIAQQYPNVTVDTLTLSVQQQSLAQDRIRALG 190

Query: 91  SQHPNRLEIIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
               NR+ +   D  A+  ++E  F+      I   +  N+G   L  + S   W    +
Sbjct: 191 PDIANRITVHLVDYRAMPAEWEGVFDR----VISVEMIENVGHEFLERYWSVVDWAMKKK 246

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGW-------RTKATMMFDISPHVFFP---- 197
               + Q  V     A         L+ L          R     + +I PH        
Sbjct: 247 GGVGVVQ--VITIPEALFPGGLLPSLTFLLQTLQSGSKGRLVVDSISNIGPHYARTLREW 304

Query: 198 ----SPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
                 K  S ++  +    P     E ++         RRK +
Sbjct: 305 RRRFEAKFESVIVPALRREYPDVMAREEVEVF-------RRKWI 341


>gi|157960631|ref|YP_001500665.1| methyltransferase small [Shewanella pealeana ATCC 700345]
 gi|262829156|sp|A8H0P3|TRMN6_SHEPA RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|157845631|gb|ABV86130.1| methyltransferase small [Shewanella pealeana ATCC 700345]
          Length = 264

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +  +   T+++IGAG G L+ M       K+  IE D       +   +  P  +RLE+I
Sbjct: 30  APLVQAKTILDIGAGSGLLSLMAAQRSLAKITAIEVDTDAALDCQQNFNASPWFDRLEVI 89

Query: 101 QDDALKV----------DFEKFFNISSPIRIIANLPY 127
             D                           II N PY
Sbjct: 90  CCDIQAYAQAHTQVHSQAHNHAEQSKQFEHIICNPPY 126


>gi|108563833|ref|YP_628149.1| hypothetical protein HPAG1_1408 [Helicobacter pylori HPAG1]
 gi|107837606|gb|ABF85475.1| hypothetical protein HPAG1_1408 [Helicobacter pylori HPAG1]
          Length = 238

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             +  T+++IG+G G L  +         V ++EKD +     +  + + PN  ++ + D
Sbjct: 32  IKNSGTILDIGSGCGILGLLCARDNPLASVHLVEKDSKMAFCSQKNALKFPNA-QVFEGD 90

Query: 104 ALKVDFEKFFNISSPIRIIANLPYN 128
            L  +    ++      I+ N P+ 
Sbjct: 91  FLDFNPPILYD-----AIVCNPPFY 110


>gi|319440181|ref|ZP_07989337.1| putative RNA methyltransferase [Corynebacterium variabile DSM
           44702]
          Length = 380

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 34  NILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           +++  +A +       G +V+E+G G G L  +L   GA +V   + + +     +    
Sbjct: 172 DLVDDVAAAFLPSLKAGASVLELGTGTGVLAAVLARRGAVRVTATDVNPRAVACARANLD 231

Query: 92  QH--PNRLEIIQDD 103
           +     R E+++ D
Sbjct: 232 RLGVGERCEVVEAD 245


>gi|302530265|ref|ZP_07282607.1| hypothetical protein SSMG_06647 [Streptomyces sp. AA4]
 gi|302439160|gb|EFL10976.1| hypothetical protein SSMG_06647 [Streptomyces sp. AA4]
          Length = 211

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDIS 90
           G     +V+E+G G G  T+MLL +  R      +E +      L+   
Sbjct: 42 LGVESAHSVVELGPGTGVFTEMLLRMLQRDAHFTAVEINPHLVQELRARF 91


>gi|256823041|ref|YP_003147004.1| type 12 methyltransferase [Kangiella koreensis DSM 16069]
 gi|256796580|gb|ACV27236.1| Methyltransferase type 12 [Kangiella koreensis DSM 16069]
          Length = 179

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 15/108 (13%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           +LK + S   I P             + KKIA+S       T+IE+GAG G +T+ LL  
Sbjct: 8   ALKNLKSTGSIAPSSRF---------LAKKIAKSIPPTAK-TLIELGAGDGVITRHLLAT 57

Query: 69  --GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
                ++   E   Q  P+L+ I  QHP    I    AL++  +   +
Sbjct: 58  MNPDAQLTAYELSDQLLPLLQGI--QHPG-FSINNHSALELTNDFAAD 102


>gi|194759153|ref|XP_001961814.1| GF19699 [Drosophila ananassae]
 gi|190615511|gb|EDV31035.1| GF19699 [Drosophila ananassae]
          Length = 259

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 21/105 (20%)

Query: 14  LSHYKIIPKKYMGQN---------------FLLDLNILKKIAE-----SSGSLDGITVIE 53
           + H++    ++  QN               F+ D  + +   +     ++  L+G  ++E
Sbjct: 37  VRHHENHASEWWNQNGTMSALHALNEIRVPFIRDGMVARGTVKPGYVNTTRVLNGQRILE 96

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           +G G G LT+ L  LGA +V  I+  ++     +         L 
Sbjct: 97  VGCGGGLLTEQLARLGA-QVTGIDLGEKLIEAARTHLECSSPELT 140


>gi|85714930|ref|ZP_01045915.1| hypothetical protein NB311A_11177 [Nitrobacter sp. Nb-311A]
 gi|85698127|gb|EAQ35999.1| hypothetical protein NB311A_11177 [Nitrobacter sp. Nb-311A]
          Length = 678

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---- 88
             I+  + E+     G  ++EIGAG G    +L  + A  V  +E   +  P+ +     
Sbjct: 77  PYIVAFMVEALLLKGGEKILEIGAGSGYAAAVLSEIAAD-VHTVE---RLGPLAQKAATL 132

Query: 89  ISSQHPNRLEIIQDDALKVDFE 110
           ++    N + ++  D  K   E
Sbjct: 133 LAELGYNNVHVLHGDGTKGWPE 154


>gi|290962960|ref|YP_003494142.1| hypothetical protein SCAB_86781 [Streptomyces scabiei 87.22]
 gi|260652486|emb|CBG75619.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 287

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQF-----FPILKDISSQ-- 92
            + G+  G   +++GAG G +++ LL   G   V+ +++D +F      P L+   +   
Sbjct: 56  RALGAGPGWHCLDVGAGTGTVSRRLLDEAGVTSVLAVDRDVRFLGARPVPGLEVREADVT 115

Query: 93  ----HPNRLEIIQDDALKVDFEK 111
                P R  ++    + +   +
Sbjct: 116 APDFAPGRFRLVHARFVLMHLPE 138


>gi|254487215|ref|ZP_05100420.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp. GAI101]
 gi|214044084|gb|EEB84722.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp. GAI101]
          Length = 224

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL+   L K+ ++    +   V++IG+  G  + ++  + A  V+ +E+D       ++ 
Sbjct: 68  LLEPRTLAKMLDALAITNDELVLDIGSALGYSSAVIAHM-AEAVVAVEEDDDMAKESQET 126

Query: 90  S-SQHPNRLEIIQD 102
             +   + + +   
Sbjct: 127 LIAADIDNVIVHHG 140


>gi|166713336|ref|ZP_02244543.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 218

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           ++ ++     G  V+E+G G G  T  L TL AR+V+ +E D 
Sbjct: 70  RMLQALDLQPGEDVLEVGTGSGFATACLATL-AREVVSLEIDP 111


>gi|297584654|ref|YP_003700434.1| 50S ribosomal protein L11 methyltransferase [Bacillus
           selenitireducens MLS10]
 gi|297143111|gb|ADH99868.1| ribosomal protein L11 methyltransferase [Bacillus selenitireducens
           MLS10]
          Length = 316

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQD 102
             +G +++++G G G L+     LGA KV  ++ D+      ++    ++  +R+ + Q 
Sbjct: 173 IREGDSLVDVGCGTGVLSIAAAKLGAAKVHALDLDEVAVHSAVINTKLNKVHDRVSVKQG 232

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           + L          S    I+AN+   +   +    +        + +  ++ QK
Sbjct: 233 NLLD------DTPSEQDLIVANILAEVIVTIPEEALKLTRPGGMFITSGIIGQK 280


>gi|91204143|emb|CAJ71796.1| conserved hypothetical methylase protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 205

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 30/84 (35%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              +   +   +I++G G   L   LL  G R + V++   +     ++   +    +  
Sbjct: 35  ITLAKPDNAAKIIDVGGGVSVLVDELLEKGYRDLTVLDISSRAIQYARERLGRRAENVCW 94

Query: 100 IQDDALKVDFEKFFNISSPIRIIA 123
           I+ D  +      F++     +  
Sbjct: 95  IEADVTEYVAPYPFDLWHDRAVFH 118


>gi|296128239|ref|YP_003635489.1| Methyltransferase type 11 [Cellulomonas flavigena DSM 20109]
 gi|296020054|gb|ADG73290.1| Methyltransferase type 11 [Cellulomonas flavigena DSM 20109]
          Length = 222

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ----FFPILKD 88
             + +++ + +    G  V+EIG G GNL  +L    A  V+    D           K 
Sbjct: 41  ERLHRRLLDQAALRPGERVLEIGCGTGNL-LLLAHGVAPGVVTTGLDPDAAALARAARKA 99

Query: 89  ISSQHPNRLEIIQDDALKVDFE 110
                  RL++   DAL     
Sbjct: 100 RRRGTDVRLDLGYADALPYPDA 121


>gi|264676286|ref|YP_003276192.1| Cyclopropane-fatty-acyl-phospholipid synthase [Comamonas
           testosteroni CNB-2]
 gi|262206798|gb|ACY30896.1| Cyclopropane-fatty-acyl-phospholipid synthase [Comamonas
           testosteroni CNB-2]
          Length = 433

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPN 95
           + IA       G  V++IG G G L++ L  + GA  V  I    +     +  +SQ   
Sbjct: 168 RHIAAKLLIEPGQRVLDIGCGWGGLSRYLAEVGGAGHVTGITLSTEQLAGAQSRASQS-- 225

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIAN--LPYNIGTRL 133
               I  + L+   E + +   P   I +  +  ++GTR 
Sbjct: 226 ----IHGERLEYRLEDYRDTQGPFERIVSVGMFEHVGTRF 261


>gi|120419812|gb|ABM21571.1| CrpC [Nostoc sp. ATCC 53789]
          Length = 1943

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 47   DGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDD 103
                V+EIG G   +        GA+KV  IE+D+Q   +      +     +++II  D
Sbjct: 1018 KDKVVVEIGTGKDAIIARFCAEAGAKKVYAIERDEQTSKLASACVQELGLSEQIQIIHGD 1077

Query: 104  ALKVDFEKFFNIS 116
            A   +  +  ++ 
Sbjct: 1078 ATTANLPEEVDVC 1090


>gi|110639396|ref|YP_679605.1| hypothetical protein CHU_3022 [Cytophaga hutchinsonii ATCC 33406]
 gi|110282077|gb|ABG60263.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 215

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                 + EIGAG G     LL    + K+I +E+  +    L+   + + + ++I++ D
Sbjct: 42  IQPTENIAEIGAGYGRCIDFLLAKKHQGKIIAVEQSPKLCEHLR---AVYSSTIKIVEGD 98

Query: 104 ALKVDFEKFFN 114
             KV F+   +
Sbjct: 99  IYKVSFDHQID 109


>gi|320449784|ref|YP_004201880.1| ribosomal RNA small subunit methyltransferase C [Thermus
           scotoductus SA-01]
 gi|320149953|gb|ADW21331.1| ribosomal RNA small subunit methyltransferase C [Thermus
           scotoductus SA-01]
          Length = 393

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 16/105 (15%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA-- 104
            G  ++++GAG G LT  L  LG  +V  +E D      L+    ++     ++  D   
Sbjct: 231 RGRRILDLGAGYGALTLPLARLGG-EVTALEDDLVSVLSLERSLKENRLAARVLHSDVDE 289

Query: 105 -------------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
                         +V         +   I+ N P+++G  ++ +
Sbjct: 290 ALAEGGVSWGSRPAQVQAPGLTEEEAFDIIVTNPPFHVGGAVILD 334


>gi|195998001|ref|XP_002108869.1| hypothetical protein TRIADDRAFT_52302 [Trichoplax adhaerens]
 gi|190589645|gb|EDV29667.1| hypothetical protein TRIADDRAFT_52302 [Trichoplax adhaerens]
          Length = 453

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNR 96
           I  +        V+++G G G L+      G R V  I++        +DI   +Q  N+
Sbjct: 165 ILNNPALFRDKIVLDVGCGTGILSMFAAKAGCRHVYAIDQ-SDIINYARDIVMENQLENK 223

Query: 97  LEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLF---NWISAD 141
           + +I+     +K+  EK   I S       L  ++   ++F    W++ D
Sbjct: 224 ITLIKGKVEDVKLPIEKVDVIISEWMGYCLLFESMLDSVIFAREKWLTVD 273


>gi|73985650|ref|XP_533816.2| PREDICTED: similar to HemK methyltransferase family member 1
           (M.HsaHemKP) [Canis familiaris]
          Length = 358

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS--QHPNRLE 98
           + G+ DG  ++E+G G G ++  LL  L   +VI ++K +    + ++ +   +  +R+ 
Sbjct: 154 AMGTQDGPLILEVGCGSGAISLSLLSQLPQSRVIAVDKGEAAICLTEENAQRLRLLDRIR 213

Query: 99  IIQDDA-LKVDFEKFFNISSPIRIIANLPY 127
           I+  D  L+  +           +++N PY
Sbjct: 214 IVPLDVTLEGSWAHLLPWGPVDLVVSNPPY 243


>gi|118472123|ref|YP_884514.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
 gi|118173410|gb|ABK74306.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
          Length = 237

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LE 98
            E      G TV++IG GPGN+T  L        + +  D    P+L    +    R + 
Sbjct: 74  VEWLRIPPGGTVLDIGCGPGNITAQLARAAGLDGLALGVD-ISEPMLARAVAAEAGRQVG 132

Query: 99  IIQDDALKVDF-EKFFNISSPIRIIANLP 126
            ++ DA ++ F ++ F+ ++ + +   +P
Sbjct: 133 FVRADAQQLPFRDEVFDAATSLAVFQLIP 161


>gi|214003846|gb|ACJ60966.1| VEG24 [uncultured soil bacterium]
          Length = 282

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDD 103
            V+E+ AG G LT  LL LG  +V  +E        L+   ++ P    +R  ++  D
Sbjct: 76  PVLELAAGTGRLTFPLLDLG-LEVTALELSTAMLGALQKRLAEAPVEIQDRCTVVHGD 132


>gi|229583486|ref|YP_002841885.1| Protein-L-isoaspartate (D-aspartate)O-methyltransferase [Sulfolobus
           islandicus Y.N.15.51]
 gi|228014202|gb|ACP49963.1| Protein-L-isoaspartate (D-aspartate)O-methyltransferase [Sulfolobus
           islandicus Y.N.15.51]
          Length = 236

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           I +     +   V+EIG G G  T ++   +G   ++ IE D   F   K++       +
Sbjct: 64  ILDILNLEENQKVLEIGTGIGYYTALIAEVVGENNIVSIEIDDTMFEYAKNVLLIRYPLI 123

Query: 98  EIIQDD 103
           ++++ D
Sbjct: 124 KLLKTD 129


>gi|82703514|ref|YP_413080.1| glycosyl transferase, group 1 [Nitrosospira multiformis ATCC 25196]
 gi|82411579|gb|ABB75688.1| Glycosyl transferase, group 1 [Nitrosospira multiformis ATCC 25196]
          Length = 996

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIGAG G +T+ L   GA  ++ +E   +   I +  +    N + ++ +   + + +
Sbjct: 86  ILEIGAGCGAITRYLGEAGAN-ILALEGSPRRAAIARSRTRDLEN-VTVLAEKFDQFECD 143

Query: 111 KFFNISSPIRII--ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ-----KEVGERIT 163
             F++ + I ++  ANL        L       +      +L L  +     K     + 
Sbjct: 144 HQFDLITLIGVLEYANLFTTGENPALAMLQRVRSLLKPEGTLILAIENQLGLKYFAGALE 203

Query: 164 AQKNSPHYG 172
                P YG
Sbjct: 204 DHIGQPMYG 212


>gi|297157623|gb|ADI07335.1| hypothetical protein SBI_04214 [Streptomyces bingchenggensis BCW-1]
          Length = 399

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +   +G TV+EIG G G  T +     G+  V  IE D                   +  
Sbjct: 125 AEVTEGQTVLEIGTGTGYSTALACERLGSADVTSIEVDPHRLETAASTLYGCGYTPTLAV 184

Query: 102 DDALKVDFEK 111
            D L   + +
Sbjct: 185 SDGLYGYWPE 194


>gi|294886033|ref|XP_002771524.1| myst histone acetyltransferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239875228|gb|EER03340.1| myst histone acetyltransferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 1227

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
            ++  + G   G+ V+++G G G   + +       V+  +  ++   + K+I+      
Sbjct: 672 DEVIATLGLGPGMKVLDVGCGVGGPARYISYKSGCSVVGYDVQEELIEVGKEITEAVGLS 731

Query: 95  NRLEIIQDDALK 106
           N+++++  DA K
Sbjct: 732 NKVDLVCGDAAK 743


>gi|228985908|ref|ZP_04146056.1| hypothetical protein bthur0001_25980 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773837|gb|EEM22255.1| hypothetical protein bthur0001_25980 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 247

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  IKNENWLQEVAKEVQEQIGYPFQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  N +EI   D  K++FE+ F++
Sbjct: 76  VMFAKEHSTNDIEIHCADFYKINFEEKFDV 105


>gi|332670728|ref|YP_004453736.1| type 11 methyltransferase [Cellulomonas fimi ATCC 484]
 gi|332339766|gb|AEE46349.1| Methyltransferase type 11 [Cellulomonas fimi ATCC 484]
          Length = 196

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           T +++G G G LT+ L   G   V  ++ D       +  +    + L  +  DAL V  
Sbjct: 25  TALDVGCGEGLLTRRLRAAGVPSVTGVDADADQVA--RARAHADSDGLHYLLGDALDVPH 82

Query: 110 EKFFNI 115
           +  F++
Sbjct: 83  DGRFDL 88


>gi|323497775|ref|ZP_08102789.1| tRNA (adenine-N(6)-)-methyltransferase [Vibrio sinaloensis DSM
           21326]
 gi|323317122|gb|EGA70119.1| tRNA (adenine-N(6)-)-methyltransferase [Vibrio sinaloensis DSM
           21326]
          Length = 237

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEII 100
                  V++IG G G L  M     +   V  I+ D+      +   S  P   R+ + 
Sbjct: 37  DLNTANAVLDIGTGTGLLALMCCQRSSNIAVDAIDIDRHALEAARSNFSTSPWSQRITLH 96

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           + + L+  F+  F+      II N PY   
Sbjct: 97  KGNVLQHPFDHCFDT-----IICNPPYFNS 121


>gi|308273829|emb|CBX30430.1| hypothetical protein N47_Q17530 [uncultured Desulfobacterium sp.]
          Length = 248

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 16/135 (11%)

Query: 3   MNNKSHSLKTIL-------SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG 55
           M N+ H +  +L           I   K +G  F +D  +L    +S+    G  V++IG
Sbjct: 1   MQNRGHLIMDLLTDDSFFNGKISIRQNK-LGYRFSVDSVLLASYVKSAA---GDKVLDIG 56

Query: 56  AGPGNLTQMLLTLGAR-KVIVIEKDQQFF--PILKDISSQHPNRLEIIQDDALKVDFEKF 112
            G G ++ +L       ++  IE  +       L   ++    +++I+  D   +     
Sbjct: 57  TGCGIISLILAYRNPGIEIYGIEVQKSLADLAALNVKNNCMEEQIKIVYTDVKNLKKSML 116

Query: 113 FNISSPIRIIANLPY 127
               SP  I+ N PY
Sbjct: 117 --SGSPDIIVCNPPY 129


>gi|257051316|ref|YP_003129149.1| tRNA methyltransferase complex GCD14 subunit [Halorhabdus utahensis
           DSM 12940]
 gi|256690079|gb|ACV10416.1| tRNA methyltransferase complex GCD14 subunit [Halorhabdus utahensis
           DSM 12940]
          Length = 243

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           I   +G   G  V+++G G G L   L  +GA  V+  E+ + F  + ++    +   + 
Sbjct: 76  IVGHTGIAAGDRVLDVGTGTGVLAGYLGRVGA-SVVTYEQREDFADVARENMALAGVEDA 134

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIA 123
           +++   DA +   E   +  +P  ++ 
Sbjct: 135 VDVRTGDATETLGE--LDDDAPFDVLT 159


>gi|240170609|ref|ZP_04749268.1| putative methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 253

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          L D    + + +  G   G   +E+GAG G+L Q +   GA  V+ ++ D +F   L 
Sbjct: 24 LWDPGT-QALLDDLGIGPGWRCLEVGAGGGSLLQWMSGRGA-MVVAVDIDTRFIEPLA 79


>gi|206603179|gb|EDZ39659.1| Putative TRNA (1-methyladenosine) methyltransferase [Leptospirillum
           sp. Group II '5-way CG']
          Length = 276

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF----PILKDISSQHPNRL 97
               G+ V+E G G G +T  LL + A    V  +EK ++        L+ ++ +  +  
Sbjct: 94  DIRPGLRVLESGIGSGAMTLSLLRMCAPGGHVTSVEKREEHAVLAMENLERLAPELLSSH 153

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +I  D    D           R++ +LP
Sbjct: 154 RLILGDIAGPDLPAILGPEPFDRVLLDLP 182


>gi|149203822|ref|ZP_01880791.1| protein-L-isoaspartate O-methyltransferase [Roseovarius sp. TM1035]
 gi|149142939|gb|EDM30981.1| protein-L-isoaspartate O-methyltransferase [Roseovarius sp. TM1035]
          Length = 217

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 32/73 (43%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +LD   L K+ ++    +   V++IG+G G    ++  +    V V +K        + +
Sbjct: 61  MLDPRTLAKMLDALEIENDDLVLDIGSGYGYSAAVIARMAEAVVAVEDKASVVAEAQRTL 120

Query: 90  SSQHPNRLEIIQD 102
           S Q  + + + + 
Sbjct: 121 SEQGADNVVLHEG 133


>gi|160899390|ref|YP_001564972.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Delftia
           acidovorans SPH-1]
 gi|160364974|gb|ABX36587.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Delftia
           acidovorans SPH-1]
          Length = 236

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
             I  ++ +         V+EIGAG G +   LL   A++V+ +E   +   + ++
Sbjct: 83  PRIESRMLQDLKIKPTDRVLEIGAGSGYM-AALLAAQAKEVVTLEIVPELAEMARE 137


>gi|15839174|ref|NP_299862.1| protein-L-isoaspartate O-methyltransferase [Xylella fastidiosa
           9a5c]
 gi|9107802|gb|AAF85382.1|AE004065_7 protein-L-isoaspartate O-methyltransferase [Xylella fastidiosa
           9a5c]
          Length = 218

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 8/132 (6%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPN 95
           ++ ++        V+EIG G G LT  L +LG  +++ +E +                 +
Sbjct: 70  RLLQALMLSPEEDVLEIGTGSGFLTACLASLG-HEIVSLEINSALGASAHTHLDTIGLGS 128

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            + I Q DA     E+ F++      +  LP          W+  +         +   Q
Sbjct: 129 NVHIEQADAFTWQPERQFSVICLTGAVNTLPLQ-----FLQWLHPNGRMFAIHGHSPAMQ 183

Query: 156 KEVGERITAQKN 167
             +     +  N
Sbjct: 184 AVLVRGDASTPN 195


>gi|54296329|ref|YP_122698.1| hypothetical protein lpp0358 [Legionella pneumophila str. Paris]
 gi|53750114|emb|CAH11506.1| hypothetical protein lpp0358 [Legionella pneumophila str. Paris]
          Length = 258

 Score = 40.9 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 46  LDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                +++IG G G  T+ +LL +    V+ I+  +    + +D+S + PN   + + D 
Sbjct: 32  NPTDKILDIGCGNGAFTKNILLQVPQGSVLGIDASENMLHLAQDMSKKFPN-FSVQKADV 90

Query: 105 LKVDFEKFFN 114
           L + F   F+
Sbjct: 91  LTMTFNSQFD 100


>gi|325276436|ref|ZP_08142205.1| trans-aconitate 2-methyltransferase [Pseudomonas sp. TJI-51]
 gi|324098430|gb|EGB96507.1| trans-aconitate 2-methyltransferase [Pseudomonas sp. TJI-51]
          Length = 258

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ 92
             ++ +  +  S       ++G GPGN T++LL      +V+ ++ D       ++    
Sbjct: 17  RAVRDLLAAVPSRPVRHATDLGCGPGNSTEVLLQRYPDAQVMALDSDPDMIAKARERKRL 76

Query: 93  HPNRLEIIQDDA 104
              R+  +  D 
Sbjct: 77  CIPRVRTVVADI 88


>gi|290960311|ref|YP_003491493.1| O-methyltransferase [Streptomyces scabiei 87.22]
 gi|260649837|emb|CBG72953.1| putative O-methyltransferase [Streptomyces scabiei 87.22]
          Length = 322

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ K+       DG  V+EIGAG G    +L    G  +V  ++ D       +    
Sbjct: 98  PSLMAKMLAELEVEDGDRVLEIGAGTGYNAALLAHRLGDEQVTTVDLDADITEAARRHLD 157

Query: 92  QHPNRLEIIQDD 103
              +   ++  D
Sbjct: 158 AAGHHPTVVTAD 169


>gi|302524568|ref|ZP_07276910.1| predicted protein [Streptomyces sp. AA4]
 gi|302433463|gb|EFL05279.1| predicted protein [Streptomyces sp. AA4]
          Length = 246

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 45/104 (43%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            + G L G  V+++G G G+ T+ +  LGA +V+  +       + +   +++P  +   
Sbjct: 36  NALGDLRGARVLDVGCGEGSFTRRIKQLGAAQVVGTDLSPGMIALARQAEARNPLGITHE 95

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
             D   +  +  F++ + I ++         + +   + A+  P
Sbjct: 96  VQDLAAMPLQGEFDVVTAIHVLHYADTRETMQTMAKTMHANLKP 139


>gi|218288634|ref|ZP_03492911.1| ribosomal protein L11 methyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241291|gb|EED08466.1| ribosomal protein L11 methyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 316

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G+ V+++G G G L      +GA +V+ I+ D        D    +   +R+++ Q 
Sbjct: 175 VRPGMRVVDVGTGTGVLAIAAALVGAERVVAIDLDPVAVSAATDNVRKNGLEDRVDVRQG 234

Query: 103 DAL 105
           D L
Sbjct: 235 DLL 237


>gi|126739968|ref|ZP_01755658.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp.
           SK209-2-6]
 gi|126718787|gb|EBA15499.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp.
           SK209-2-6]
          Length = 217

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL+   L K+ ++        V+++  G G  T  +    A  VI +E+D+      ++ 
Sbjct: 61  LLEARTLAKVLDALDIQPNELVLDVACGQGYST-AVAAQMAEMVIGVEEDETMAAEAQEQ 119

Query: 90  SSQHPNRLEIIQD 102
            S       I+  
Sbjct: 120 LSTIGADNAIVHM 132


>gi|86358161|ref|YP_470053.1| SAM-dependent methyltransferase protein [Rhizobium etli CFN 42]
 gi|86282263|gb|ABC91326.1| probable SAM-dependent methyltransferase protein [Rhizobium etli
           CFN 42]
          Length = 266

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
            + +G  DG  V+++G G G+L   L    G R++  I+    F    K   +    R+ 
Sbjct: 29  IDFAGLADGDRVLDVGCGTGSLAFTLAQTSGLREIAAIDYSPVFVEAAKR--ANTDPRIS 86

Query: 99  IIQDDALKVDFEK 111
           I Q DA  + FE 
Sbjct: 87  IQQADACAMPFED 99


>gi|148224836|ref|NP_001089353.1| ribosomal RNA adenine dimethylase domain containing 1 [Xenopus
           laevis]
 gi|62204141|gb|AAH92321.1| MGC115057 protein [Xenopus laevis]
          Length = 567

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 14/132 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGAR 71
           +   + + PKK   Q+   ++  L K+      L G   V++IG+G G+L++ L      
Sbjct: 104 LFRKH-VKPKK---QH---EIRQLGKLVRILSDLTGCDQVLDIGSGQGHLSRFLSFGQGL 156

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            V  +E DQ    +           L     D         F  + P +++A +      
Sbjct: 157 SVTAVEADQHLVKMAAKFDHDFMYML-----DKKSHHITDLF-PNPPRQVMAWVDPKASW 210

Query: 132 RLLFNWISADTW 143
             L   +   + 
Sbjct: 211 EDLAKQLGECSC 222


>gi|325104476|ref|YP_004274130.1| protein-L-isoaspartate O-methyltransferase [Pedobacter saltans DSM
           12145]
 gi|324973324|gb|ADY52308.1| protein-L-isoaspartate O-methyltransferase [Pedobacter saltans DSM
           12145]
          Length = 243

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E      G  V+EIG G G  T +L+ LGA KV  IE+ ++ F     I           
Sbjct: 103 ELLHINKGDKVLEIGTGCGYQTCVLIELGA-KVYTIERQEKLFERTSKILPYLGYEATFF 161

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             D  K   E        I + A  P+     +L   + 
Sbjct: 162 CGDGSKGIAE--HAPYDKIIVTAGAPFV--PEILLRQLK 196


>gi|149192207|ref|ZP_01870424.1| predicted O-methyltransferase [Vibrio shilonii AK1]
 gi|148833965|gb|EDL50985.1| predicted O-methyltransferase [Vibrio shilonii AK1]
          Length = 240

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFF--PILKDISSQHPNRLEI 99
           +   D   +++IG G G L+ M+    +  ++  I+ D        L    S   +R+ +
Sbjct: 38  AQYRDSTHILDIGTGTGLLSLMIAQRYSDAQITSIDIDAVAIQDAELNVNRSPWHSRVSL 97

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +  D L   F + F+      II N PY   
Sbjct: 98  LHSDVLTTPFSESFSG-----IICNPPYFNS 123


>gi|27379762|ref|NP_771291.1| hypothetical protein bll4651 [Bradyrhizobium japonicum USDA 110]
 gi|27352915|dbj|BAC49916.1| bll4651 [Bradyrhizobium japonicum USDA 110]
          Length = 679

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  +AE+     G  V+EIGAG G    +L  + A  V  +E   +  P+ ++ ++ 
Sbjct: 77  PYIVAFMAEALMLKGGEKVLEIGAGSGYAAAVLSEIAAD-VYTVE---RLGPLAEEAAAT 132

Query: 93  H----PNRLEIIQDDALKVDFE 110
                 + + ++  D  K   E
Sbjct: 133 LTELGYDNVHVLHGDGTKGWPE 154


>gi|305663012|ref|YP_003859300.1| methyltransferase-like protein [Ignisphaera aggregans DSM 17230]
 gi|304377581|gb|ADM27420.1| methyltransferase-like protein [Ignisphaera aggregans DSM 17230]
          Length = 290

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQH-PNR 96
            ++ G LDG  V++I  G G        LGAR+V+ +E D    F   +   S     NR
Sbjct: 131 VKTLGRLDGYRVLDICTGLGYTAIAEAMLGAREVVTVEIDPNVLFIASMNPWSRGLEDNR 190

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRL 133
           + II  +A++V   K F+  +   I+ + P +NI   L
Sbjct: 191 IRIILGNAIEVI--KLFDEETFDAIVHDPPRFNIAGEL 226


>gi|226292812|gb|EEH48232.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 355

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             + G  +IE+G+G G L+   L  LGAR V   ++D      ++D   ++      I  
Sbjct: 175 ALIAGKNIIELGSGTGFLSMYCLKCLGARSVTATDRDPALISSIQDCVMRNSLDSSRIHA 234

Query: 103 DALKVDFEKFFNISSPIRIIAN 124
           D       ++ N   P R+ ++
Sbjct: 235 DI-----WEWGNPFQPHRLSSS 251


>gi|239627768|ref|ZP_04670799.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517914|gb|EEQ57780.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 318

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 11/130 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEII 100
              +   V+++G G G L    L LGA++V   + D+     + +    +    +R  +I
Sbjct: 169 RVDEDTLVLDVGTGSGILGITALKLGAKEVWGTDLDENAITAVGENLEANSISTDRFHVI 228

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA-----DTWPPFWESLTLLFQ 155
           Q + +     K +       I+     NI   ++   ++           F  S  +  +
Sbjct: 229 QGNIIDDRSVKEWAGYDRYDIVVA---NILADVIILLVNEIPAHLKQGGYFITSGIINMK 285

Query: 156 KEVGERITAQ 165
           +E  +   A+
Sbjct: 286 EEAVKAAFAK 295


>gi|218778758|ref|YP_002430076.1| protein-L-isoaspartate O-methyltransferase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760142|gb|ACL02608.1| protein-L-isoaspartate O-methyltransferase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 219

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ ++        V+EIG G G  T +L  L A KV  IE+ +  F   + I  +
Sbjct: 69  PYIVAEMTQALNLTKEDRVLEIGTGCGYQTAVLAQL-AYKVYTIERIRSLFIGARRIFDE 127

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 I+   A      +       I + A  P  I  + L + ++
Sbjct: 128 L-GFHNIVARCADGTLGWQDEAPFDAIIVTAGAP--ITPKALISQLA 171


>gi|254472108|ref|ZP_05085508.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudovibrio sp.
           JE062]
 gi|211958391|gb|EEA93591.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudovibrio sp.
           JE062]
          Length = 413

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           L  I        G+TV+EIG G G+L   +   GA +V  +    +   I ++   ++  
Sbjct: 163 LDHIVAKLDLKPGMTVLEIGGGWGSLAIRMAQAGA-QVTSLNVSTEQIKIAEERVKAAGL 221

Query: 94  PNRLEIIQDDALKVDFE 110
             ++E +  D  + + E
Sbjct: 222 EGKVEFVCLDYNEFEGE 238


>gi|83949459|ref|ZP_00958192.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM]
 gi|83837358|gb|EAP76654.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM]
          Length = 314

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G  T+ LL  GA KVI +++D     +     +++ +RLE+++    K+D
Sbjct: 22  GAGGYTRYLLAAGADKVIGVDRDPLAHDLAAQWGAEYGDRLELVRGVFSKMD 73


>gi|254293557|ref|YP_003059580.1| hemolysin A [Hirschia baltica ATCC 49814]
 gi|254042088|gb|ACT58883.1| hemolysin A [Hirschia baltica ATCC 49814]
          Length = 256

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQD-DAL 105
              V++IGA  G  T + L  GARKV  ++  +    P LK        R+   +  DA 
Sbjct: 87  DKIVLDIGASTGGFTDVALRTGARKVYAVDVGRDQLHPSLK-----ADPRVISYEATDAR 141

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
           K+D       + P  I+ +  +   ++LL   +   +      +L    Q EVG+    +
Sbjct: 142 KLDKNLI--DTPPDIIVCDASFISLSKLLKPVLRLGSEKADLITL-FKPQFEVGKENVGK 198

Query: 166 KN 167
             
Sbjct: 199 GG 200


>gi|225023537|ref|ZP_03712729.1| hypothetical protein EIKCOROL_00395 [Eikenella corrodens ATCC
           23834]
 gi|224943710|gb|EEG24919.1| hypothetical protein EIKCOROL_00395 [Eikenella corrodens ATCC
           23834]
          Length = 219

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 10/146 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ +        TV+EIG G G  T +L  L A +VI I+ D       +  +  
Sbjct: 64  PKVVARLIQGLKLTKKDTVLEIGTGSGYATAVLAKL-AGRVITIDTD----EAQQQQAKA 118

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             +RL +   D           ++ PI  ++ +       ++   +             +
Sbjct: 119 VLDRLGLTNID----YRIGDGLVNPPIATVSAIYVGGSCPVMPETLRNK-LIAGGRMAVI 173

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLT 178
           + Q+ V   +  Q N       SV+ 
Sbjct: 174 VGQEPVMRALLVQCNGEASYEQSVMF 199


>gi|160884585|ref|ZP_02065588.1| hypothetical protein BACOVA_02572 [Bacteroides ovatus ATCC 8483]
 gi|156110324|gb|EDO12069.1| hypothetical protein BACOVA_02572 [Bacteroides ovatus ATCC 8483]
          Length = 236

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 50  TVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDAL 105
            +++IG G G +  ML         ++ +E D+      ++   + P   R+E++Q D  
Sbjct: 40  RILDIGTGTGLVALMLAQRSLPDANIVALEIDEAAVGQARENVIRSPWKERVEVVQADFR 99

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGT 131
           K      F++     I++N PY + +
Sbjct: 100 KYRSSDKFDV-----IVSNPPYFVDS 120


>gi|326387206|ref|ZP_08208816.1| putative methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208387|gb|EGD59194.1| putative methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 278

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ 92
           N+  ++ ++     G  +++IG G G L+  L       ++  I+         ++ +S 
Sbjct: 28  NLTPRLLDAIAKEPGSHILDIGCGAGELSLALAAARPEARIAGIDIGPDLVAAARERASG 87

Query: 93  HPNRLEIIQDDA 104
               +     DA
Sbjct: 88  TA--VTFHCGDA 97


>gi|322435339|ref|YP_004217551.1| Methyltransferase type 11 [Acidobacterium sp. MP5ACTX9]
 gi|321163066|gb|ADW68771.1| Methyltransferase type 11 [Acidobacterium sp. MP5ACTX9]
          Length = 257

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
          I +      G  ++++G G G LT  L   GA
Sbjct: 27 IVDLLNPQPGEHILDLGCGDGALTTQLAASGA 58


>gi|260583861|ref|ZP_05851609.1| SmtA protein [Granulicatella elegans ATCC 700633]
 gi|260158487|gb|EEW93555.1| SmtA protein [Granulicatella elegans ATCC 700633]
          Length = 258

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR---L 97
               +   + V++IG GPG  T +L  LG   ++ I+  ++   + K+   ++  +   +
Sbjct: 40  RLLPANKNLKVLDIGTGPGFFTIILEELGYTNIMGIDVSEKMLEVAKENIQKYGKKDSSI 99

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           E+IQ DA K+   +F   S  I +  NL +N+   
Sbjct: 100 ELIQMDAQKL---EFKPESFDIIVSRNLTWNLEKP 131


>gi|302876211|ref|YP_003844844.1| Methyltransferase type 11 [Clostridium cellulovorans 743B]
 gi|307686943|ref|ZP_07629389.1| Methyltransferase type 11 [Clostridium cellulovorans 743B]
 gi|302579068|gb|ADL53080.1| Methyltransferase type 11 [Clostridium cellulovorans 743B]
          Length = 193

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I+ KI +  G  +G +++++ +G G L + L  +   K + ++  +     LK +  +  
Sbjct: 27  IIDKIIKKLGISEGESLLDVASGTGVLYENLKDISLSKYVALDISENMLKELKKLYFEA- 85

Query: 95  NRLEIIQDDAL-------KVDFEKFFNISSPIRIIANLPYNI 129
              + I  D         K DF   FN       +  +  N+
Sbjct: 86  ---KTICADFDEDIDLGEKFDFLVIFNSIPHFENLDTVFTNV 124


>gi|229081639|ref|ZP_04214134.1| Dimethyladenosine transferase [Bacillus cereus Rock4-2]
 gi|228701643|gb|EEL54134.1| Dimethyladenosine transferase [Bacillus cereus Rock4-2]
          Length = 212

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I E         V+E G G GNLT  LL  G R V  IE  ++   I K+     P  
Sbjct: 35  EDILEDVVHKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKL---PKE 90

Query: 97  LEIIQDDALKVDFEKFFN 114
             I   D L  +     +
Sbjct: 91  FSITDGDFLSFEVPNSID 108


>gi|212638680|ref|YP_002315200.1| ribosomal protein L11 methyltransferase [Anoxybacillus flavithermus
           WK1]
 gi|226707856|sp|B7GKD0|PRMA_ANOFW RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|212560160|gb|ACJ33215.1| Ribosomal protein L11 methylase [Anoxybacillus flavithermus WK1]
          Length = 312

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G TV+++G G G L+     LGA++V  ++ D          S++   +L  +  D 
Sbjct: 173 VKKGDTVVDVGTGSGILSIAAAMLGAKRVHALDLDPVAVE-----SAKLNVKLNKVH-DV 226

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           + V      +          +  NI   ++  ++ 
Sbjct: 227 VTVSQNNLLDRMDEQA--DVIVANILAEIILRFVD 259


>gi|157693127|ref|YP_001487589.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Bacillus
           pumilus SAFR-032]
 gi|229892084|sp|A8FFL2|Y2363_BACP2 RecName: Full=Uncharacterized methyltransferase BPUM_2363
 gi|157681885|gb|ABV63029.1| possible S-adenosylmethionine(SAM)-dependent methyltransferase
           [Bacillus pumilus SAFR-032]
          Length = 213

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 15/95 (15%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-KDQQFFPILKDISSQH 93
           ILK+I        G  V+E G+G GNLT  LL    + V  +E  D      L+      
Sbjct: 37  ILKEIV----HRAGQHVLEFGSGTGNLTAALLAAD-KNVFGVEPSDAMKKAALQK---GI 88

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           P+       D L      F     P  I+++  ++
Sbjct: 89  PDVFH--DGDFLSFPAPPF----EPDTIVSSYAFH 117


>gi|110803257|ref|YP_698560.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium perfringens SM101]
 gi|110683758|gb|ABG87128.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium perfringens SM101]
          Length = 197

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 29  FLLDLNILK----------KI--AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIV 75
           F+ D   ++          +I              ++IG+G G++T Q    +    V  
Sbjct: 3   FIKDSEFIRGKCPMTKEDIRILTISKLDLDKDSNFLDIGSGTGSITIQASKFIEEGAVFS 62

Query: 76  IEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106
           IE+D++   + K+   +   N + +++ DA++
Sbjct: 63  IERDEEAIRVTKENLKKFNCNNVTLLEGDAIE 94


>gi|222823527|ref|YP_002575101.1| ribosomal RNA adenine dimethylase; phospholipid
          N-methyltransferase [Campylobacter lari RM2100]
 gi|222538749|gb|ACM63850.1| ribosomal RNA adenine dimethylase; phospholipid
          N-methyltransferase [Campylobacter lari RM2100]
          Length = 183

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD 88
          +S       ++EIG G G+ T+ +L   +       +E +      L+ 
Sbjct: 28 TSHVQHAKNIVEIGPGTGSFTKYILKQKSHNASFFAVEINPHMAKKLEQ 76


>gi|325143778|gb|EGC66095.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis M01-240013]
 gi|325206795|gb|ADZ02248.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis M04-240196]
          Length = 218

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++A+        TV+EIG G G  T  LL   A KV+  + D       +  +  
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGKVVSDDID----AEQQKRAKA 117

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             + L +   D ++ +     +  +P   +
Sbjct: 118 VLDGLSLENIDYVQNNGLTELSAGAPFDAV 147


>gi|322410938|gb|EFY01846.1| adenine-specific methyltransferase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 317

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLE 98
           E     D + V+EIG+G GNL Q LL    +K+  + IE D     +   I+    +   
Sbjct: 103 EQLSDKDSLEVLEIGSGTGNLAQTLLNNTIKKLDYVGIELDDLLIDLSASIAEVMDSSAR 162

Query: 99  IIQDDALK 106
            IQ+DA++
Sbjct: 163 FIQEDAVR 170


>gi|294789038|ref|ZP_06754278.1| periplasmic glucans biosynthesis protein, MdoG [Simonsiella
           muelleri ATCC 29453]
 gi|294483140|gb|EFG30827.1| periplasmic glucans biosynthesis protein, MdoG [Simonsiella
           muelleri ATCC 29453]
          Length = 218

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           ++L+  I+ ++A+         V+EIG G G  T +L  L A  V  ++ D
Sbjct: 59  YMLEPKIVARLAQGLNLKKTDQVLEIGTGAGYATAVLAYLAAH-VHTVDMD 108


>gi|188576260|ref|YP_001913189.1| putative methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520712|gb|ACD58657.1| putative methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 228

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L+   ++     +++++Q+D
Sbjct: 77  LPGARVLDLFAGSGALGLEAVSRGAGHATLIERDSSLVQRLRAHVTRLDAATQVQVLQED 136

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           A++   E+     + I  +           +   + A      W
Sbjct: 137 AVR-WLERAPAALADIVFVDPPFAACLWPAVLERLPAHVAADAW 179


>gi|158285264|ref|XP_308218.4| AGAP007652-PA [Anopheles gambiae str. PEST]
 gi|157019907|gb|EAA04569.4| AGAP007652-PA [Anopheles gambiae str. PEST]
          Length = 281

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 13/165 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + + I ++     G TV+E+G G G      L +GA +VI  + D     +   + + 
Sbjct: 107 QALTRFILDTGHVFRGKTVLEVGCGCGASAIAALLVGATRVIANDIDP--VALQATLLNA 164

Query: 93  HPNRLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N    I  + L V  +           + +      +   L ++   A    P+ + L
Sbjct: 165 ERNG---ITGNGLVVSSDNLIGQGADETHQTVDRCEVVLIGDLFYDTEIAADLHPWIQRL 221

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
                +   E               VL+    +A    ++  +V 
Sbjct: 222 A----RAGAEIYIGDPGRHGITETGVLSQMELRARY--ELPANVC 260


>gi|219848251|ref|YP_002462684.1| cyclopropane fatty acyl phospholipid synthase [Chloroflexus
           aggregans DSM 9485]
 gi|219542510|gb|ACL24248.1| Cyclopropane-fatty-acyl-phospholipid synthase [Chloroflexus
           aggregans DSM 9485]
          Length = 394

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  IA       G+ V++IG G G   Q L       V+ I   ++   + +D     P 
Sbjct: 167 LDLIARKLDLQPGMRVLDIGCGWGGTAQYLAERYGVHVVGITVSKEQAELARDRCRGLPV 226

Query: 96  RLEI 99
            + +
Sbjct: 227 DIRL 230


>gi|15609255|ref|NP_216634.1| RNA methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|15841610|ref|NP_336647.1| hypothetical protein MT2178 [Mycobacterium tuberculosis CDC1551]
 gi|31793298|ref|NP_855791.1| RNA methyltransferase [Mycobacterium bovis AF2122/97]
 gi|121638000|ref|YP_978224.1| putative RNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148661933|ref|YP_001283456.1| putative RNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148823329|ref|YP_001288083.1| RNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|167967472|ref|ZP_02549749.1| hypothetical RNA methyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|215403502|ref|ZP_03415683.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|215411822|ref|ZP_03420614.1| RNA methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|215427494|ref|ZP_03425413.1| RNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|215431042|ref|ZP_03428961.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|215446343|ref|ZP_03433095.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|218753840|ref|ZP_03532636.1| RNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|224990494|ref|YP_002645181.1| putative RNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798820|ref|YP_003031821.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|254232278|ref|ZP_04925605.1| hypothetical protein TBCG_02066 [Mycobacterium tuberculosis C]
 gi|254364925|ref|ZP_04980971.1| hypothetical RNA methyltransferase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551150|ref|ZP_05141597.1| RNA methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187106|ref|ZP_05764580.1| RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|260201227|ref|ZP_05768718.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|260205406|ref|ZP_05772897.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289443621|ref|ZP_06433365.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289447738|ref|ZP_06437482.1| RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289554096|ref|ZP_06443306.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289574797|ref|ZP_06455024.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289745391|ref|ZP_06504769.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289750712|ref|ZP_06510090.1| RNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289754226|ref|ZP_06513604.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289758236|ref|ZP_06517614.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|289762280|ref|ZP_06521658.1| RNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|294993527|ref|ZP_06799218.1| RNA methyltransferase [Mycobacterium tuberculosis 210]
 gi|297634703|ref|ZP_06952483.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
 gi|297731691|ref|ZP_06960809.1| RNA methyltransferase [Mycobacterium tuberculosis KZN R506]
 gi|298525614|ref|ZP_07013023.1| RNA methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|306776365|ref|ZP_07414702.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|306780144|ref|ZP_07418481.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|306784888|ref|ZP_07423210.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|306789255|ref|ZP_07427577.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|306793584|ref|ZP_07431886.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|306797973|ref|ZP_07436275.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|306803853|ref|ZP_07440521.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|306808425|ref|ZP_07445093.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|306968248|ref|ZP_07480909.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|306972476|ref|ZP_07485137.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|307080186|ref|ZP_07489356.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|307084766|ref|ZP_07493879.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|313659026|ref|ZP_07815906.1| RNA methyltransferase [Mycobacterium tuberculosis KZN V2475]
 gi|81669088|sp|O33253|TRMI_MYCTU RecName: Full=tRNA (adenine-N(1)-)-methyltransferase TrmI; AltName:
           Full=tRNA(m1A58)-methyltransferase;
           Short=tRNA(m1A58)MTase
 gi|15988176|pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
 gi|2253058|emb|CAB10715.1| POSSIBLE RNA METHYLTRANSFERASE [Mycobacterium tuberculosis H37Rv]
 gi|13881860|gb|AAK46461.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31618890|emb|CAD96995.1| POSSIBLE RNA METHYLTRANSFERASE [Mycobacterium bovis AF2122/97]
 gi|121493648|emb|CAL72123.1| Possible RNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124601337|gb|EAY60347.1| hypothetical protein TBCG_02066 [Mycobacterium tuberculosis C]
 gi|134150439|gb|EBA42484.1| hypothetical RNA methyltransferase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506085|gb|ABQ73894.1| putative RNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148721856|gb|ABR06481.1| hypothetical RNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|224773607|dbj|BAH26413.1| putative RNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253320323|gb|ACT24926.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|289416540|gb|EFD13780.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289420696|gb|EFD17897.1| RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289438728|gb|EFD21221.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289539228|gb|EFD43806.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289685919|gb|EFD53407.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289691299|gb|EFD58728.1| RNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289694813|gb|EFD62242.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289709786|gb|EFD73802.1| RNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|289713800|gb|EFD77812.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|298495408|gb|EFI30702.1| RNA methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|308215211|gb|EFO74610.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308326971|gb|EFP15822.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308330405|gb|EFP19256.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308334240|gb|EFP23091.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308338041|gb|EFP26892.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308341726|gb|EFP30577.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308345216|gb|EFP34067.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308349519|gb|EFP38370.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308354149|gb|EFP43000.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308358087|gb|EFP46938.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308362021|gb|EFP50872.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308365669|gb|EFP54520.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|323719331|gb|EGB28472.1| RNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|326903733|gb|EGE50666.1| RNA methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328458581|gb|AEB04004.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 280

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISS-- 91
             +I        G  V+E GAG G LT  LL     A +VI  E+        +   S  
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC 147

Query: 92  --QHPNRLEIIQDD 103
             Q P+   ++  D
Sbjct: 148 YGQPPDNWRLVVSD 161


>gi|167034368|ref|YP_001669599.1| trans-aconitate 2-methyltransferase [Pseudomonas putida GB-1]
 gi|166860856|gb|ABY99263.1| Trans-aconitate 2-methyltransferase [Pseudomonas putida GB-1]
          Length = 258

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ 92
             ++ +  +  S       ++G GPGN T++LL      +V  ++ D       ++    
Sbjct: 17  RAVRDLLAAIPSRPVRHATDLGCGPGNSTEVLLQRYPDAQVTALDSDPDMIDKARERKRL 76

Query: 93  HPNRLEIIQDDA 104
              R+  +  D 
Sbjct: 77  CIPRVRTVIADI 88


>gi|115466582|ref|NP_001056890.1| Os06g0162600 [Oryza sativa Japonica Group]
 gi|55296080|dbj|BAD67642.1| putative early nodule-specific-like protein ENOD8 [Oryza sativa
           Japonica Group]
 gi|113594930|dbj|BAF18804.1| Os06g0162600 [Oryza sativa Japonica Group]
 gi|215694922|dbj|BAG90113.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197644|gb|EEC80071.1| hypothetical protein OsI_21788 [Oryza sativa Indica Group]
          Length = 227

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 60/188 (31%), Gaps = 16/188 (8%)

Query: 33  LNILKKIAESSGSLDGI----TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            +I  ++  ++ +         V + G G G L+     L A  V+ I+ D Q   + ++
Sbjct: 30  PHIASRMLYTAENSFDDITGKVVADFGCGCGTLSVASSLLDAEHVVGIDIDPQSLELAQE 89

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            ++     +++IQ D   ++       +    ++ N P+   +R   +            
Sbjct: 90  NAADLELDIDLIQCDIKNLNLRGLLVDT----VVMNPPFG-TSRKGADMEFISMGMKVAT 144

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF-PSPKVTSTVI- 206
                  K        +    +   +S          + +++     F    +V   V  
Sbjct: 145 RAVYSLHKTSTREHIKKVALRNCNAISAEVL----CELRYNLPRTYKFHKQNEVDIAVDF 200

Query: 207 -HFIPHLN 213
             F+P   
Sbjct: 201 WRFVPRAR 208


>gi|307595611|ref|YP_003901928.1| methyltransferase [Vulcanisaeta distributa DSM 14429]
 gi|307550812|gb|ADN50877.1| methyltransferase small [Vulcanisaeta distributa DSM 14429]
          Length = 214

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 29  FLLDLNILK-KIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           ++ D NI+   I ++     L    V+++G G G        +GAR+VI ++ D +   I
Sbjct: 35  YITDANIVAVAIWDAYMRNYLTNARVLDLGCGTGRFAIAAALMGARQVICVDIDPEALTI 94

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            K+ +S++     +   D +  D            I  N P+ I + 
Sbjct: 95  AKESASEYG----LNNVDFVTNDVRNMAITGKFNVIFQNPPFGIQSE 137


>gi|293393766|ref|ZP_06638073.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291423593|gb|EFE96815.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 262

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I   +    G   G TVI++GAG G  T  LL  GA +VI +E      P+L  +++  P
Sbjct: 36  IADWLRNDIGLQAGKTVIDLGAGTGKFTPRLLDSGA-EVIAVEP---IAPMLDRLAAALP 91

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
               +    A   D     + S    + A   +   T 
Sbjct: 92  QVKTL----AATTDALPLADESVDAVVCAQSFHWFATP 125


>gi|239941200|ref|ZP_04693137.1| putative O-methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239987675|ref|ZP_04708339.1| putative O-methyltransferase [Streptomyces roseosporus NRRL 11379]
 gi|291444641|ref|ZP_06584031.1| O-methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291347588|gb|EFE74492.1| O-methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 334

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +++  + ++    DG TV+EIG GPG    L    L   A  V  ++ D       +  
Sbjct: 105 PSLMALMLDALDVRDGHTVLEIGTGPGYNAALLAHRLGDPA--VTSVDLDPDITESARGH 162

Query: 90  SSQHPNRLEIIQDD 103
            +       +I  D
Sbjct: 163 LAAAGYHPTVITGD 176


>gi|269791669|ref|YP_003316573.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099304|gb|ACZ18291.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 412

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            L G  ++E+G G G LT  L    G   V+ IE+D +   + +    +    L + 
Sbjct: 256 PLWGARILEVGTGTGALTCELARQAGPGVVVSIERDPEAMELARGNLERLGLALGVH 312


>gi|170764229|ref|ZP_02638723.2| precorrin-6Y C5,15-methyltransferase , CbiT subunit [Clostridium
           perfringens CPE str. F4969]
 gi|170715325|gb|EDT27507.1| precorrin-6Y C5,15-methyltransferase , CbiT subunit [Clostridium
           perfringens CPE str. F4969]
          Length = 197

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 29  FLLDLNILK----------KI--AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIV 75
           F+ D   ++          +I              ++IG+G G++T Q    +    V  
Sbjct: 3   FIKDSEFIRGKCPMTKEDIRILTISKLDLDKDSNFLDIGSGTGSITIQASKFIEEGAVFS 62

Query: 76  IEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106
           IE+D++   + K+   +   N + +++ DA++
Sbjct: 63  IERDEEAIRVTKENLKKFNCNNVTLLEGDAIE 94


>gi|149194071|ref|ZP_01871169.1| hypothetical protein CMTB2_03263 [Caminibacter mediatlanticus TB-2]
 gi|149136024|gb|EDM24502.1| hypothetical protein CMTB2_03263 [Caminibacter mediatlanticus TB-2]
          Length = 196

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD----ISSQHPNRLEIIQD 102
              T +E+ +G G++    ++ GA+K   +EKD +   +LK     +  +   + EII  
Sbjct: 46  PDSTWVEVFSGVGSIGLEAISRGAKKAYFLEKDPEAAKVLKRNIDSLKEEDKEKCEIILG 105

Query: 103 DALKVDF---EKFFNISSPIRIIANLPYNI 129
           D+    +   EK     +      + P+ I
Sbjct: 106 DSFDTIWDVIEKLKRDKNKAIFYFDPPFAI 135


>gi|55820852|ref|YP_139294.1| hypothetical protein stu0800 [Streptococcus thermophilus LMG 18311]
 gi|55822767|ref|YP_141208.1| hypothetical protein str0800 [Streptococcus thermophilus CNRZ1066]
 gi|55736837|gb|AAV60479.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|55738752|gb|AAV62393.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 213

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 18/144 (12%)

Query: 25  MGQ--NFLLDLNILKK---------IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ  +F  D  +  K         +  +     G  ++++G G G L   L  +   + 
Sbjct: 41  LGQGFHFYTDAGVFSKKKVDYGSQVLLNALDLERGKNLLDVGCGYGPLGISLAKVQGVQS 100

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +I+ + +   + K  + ++     I Q +  +   EKF        II+N P   G ++
Sbjct: 101 TMIDINSRAIDLAKKNAERNGVVAHIFQSNIYENVSEKF------DYIISNPPIRAGKKV 154

Query: 134 LFNWISAD-TWPPFWESLTLLFQK 156
           +   I           SLT++ QK
Sbjct: 155 VHEIIEGAFDHLNQGGSLTIVIQK 178


>gi|330823258|ref|YP_004386561.1| type 11 methyltransferase [Alicycliphilus denitrificans K601]
 gi|329308630|gb|AEB83045.1| Methyltransferase type 11 [Alicycliphilus denitrificans K601]
          Length = 334

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           +V+E+G GPG +TQ+L   G + V V+E D      L+      P  ++ ++ D
Sbjct: 31  SVLELGPGPGAMTQVLRARG-QAVTVVENDPAALQALR------PLGVQAVEAD 77


>gi|323943918|gb|EGB40010.1| hypothetical protein EREG_04452 [Escherichia coli H120]
          Length = 187

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/89 (11%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    + +++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCERLVTLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFF 113
            L++      N + +   D ++    +++
Sbjct: 89  YLRENF----NGVRVQCGDFMEWQPVQYY 113


>gi|307709017|ref|ZP_07645477.1| hypothetical protein SMSK564_0264 [Streptococcus mitis SK564]
 gi|307620353|gb|EFN99469.1| hypothetical protein SMSK564_0264 [Streptococcus mitis SK564]
          Length = 193

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 28/168 (16%)

Query: 29  FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           FL D  +  KK+ +              G TV+++G G G L   L      +  +++ +
Sbjct: 27  FLTDAGVFSKKMVDFGSQLLLKCLEVNQGETVLDVGCGYGPLGLSLAKAFGVQATMVDIN 86

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +   + +  + ++     I Q +  +    KF        +I+N P   G +++   I 
Sbjct: 87  NRALDLAQQNAERNKVEATIFQSNIYEQVEGKF------DHVISNPPIRAGKQVVHEIIE 140

Query: 140 -ADTWPPFWESLTLLFQK------------EVGERITAQKNSPHYGRL 174
            +  +      LT++ QK            EV       K    Y  L
Sbjct: 141 KSKDFLETGGDLTIVIQKKQGAPSAKSKMEEVFGNCEVVKKDKGYYIL 188


>gi|269128800|ref|YP_003302170.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Thermomonospora curvata DSM 43183]
 gi|268313758|gb|ACZ00133.1| protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Thermomonospora curvata DSM 43183]
          Length = 365

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDIS 90
            +++    E     D   V+EIG G G  T  LL   LG  +V+ IE D+Q     +   
Sbjct: 88  PDVVFSFLELLDPYDHYRVLEIGTGTG-WTAALLTARLGDGRVVSIEVDEQIAAQAETNL 146

Query: 91  SQHPNRLEIIQDD 103
                   +I  D
Sbjct: 147 KAAGPHPRLIVGD 159


>gi|227484979|ref|ZP_03915295.1| O-methyltransferase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237134|gb|EEI87149.1| O-methyltransferase [Anaerococcus lactolyticus ATCC 51172]
          Length = 212

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I           ++EIG   G  +          +  IE D++   I +    ++   + 
Sbjct: 45  IISILKIAKPKKILEIGTAIGYSSLCFKKYTGADITSIELDKETADIARKNFEKYNVNVN 104

Query: 99  IIQDDALK 106
           +I DDA+K
Sbjct: 105 LINDDAMK 112


>gi|110668320|ref|YP_658131.1| methyltransferase [Haloquadratum walsbyi DSM 16790]
 gi|109626067|emb|CAJ52518.1| probable methyltransferase [Haloquadratum walsbyi DSM 16790]
          Length = 249

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 33  LNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             I + I      +G   G  V++ G G G L   L  LGA  V   E D +F  + ++ 
Sbjct: 73  PMIPRDIGLMIGHTGVARGDRVLDAGTGTGVLAAYLGRLGA-TVTSYEIDPEFADVAREN 131

Query: 90  --SSQHPNRLEIIQDDALKVDFEKFFNISS 117
              +   + +E+   D L V F+   +   
Sbjct: 132 MSLAGVTDAVEVRTGD-LTVAFDTVADEGP 160


>gi|282866035|ref|ZP_06275083.1| Methyltransferase type 12 [Streptomyces sp. ACTE]
 gi|282559074|gb|EFB64628.1| Methyltransferase type 12 [Streptomyces sp. ACTE]
          Length = 293

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILK--DISS 91
           +  ++A  +G      ++++GAG G  T  LL    A +V  ++        L       
Sbjct: 43  VTDRLARLAGDG-VTRIVDLGAGTGTGTFALLERFPAARVTAVDSSPDMLARLAGTARLR 101

Query: 92  QHPNRLEIIQDDA 104
               R+  +  DA
Sbjct: 102 GLAERVHTLHADA 114


>gi|261199091|ref|XP_002625947.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
 gi|239595099|gb|EEQ77680.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
          Length = 330

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            ++G  V+E+G+G G L+   L  LGAR V   ++D      +KD + Q       I  D
Sbjct: 174 LIEGKNVVELGSGTGFLSMYCLKCLGARSVTATDRDPALISTIKDCAMQSDPSCNRISAD 233

Query: 104 A 104
            
Sbjct: 234 I 234


>gi|187736764|ref|YP_001816502.1| hypothetical protein IPF_2 [Escherichia coli 1520]
 gi|172051346|emb|CAP07688.1| unnamed protein product [Escherichia coli]
          Length = 187

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVMLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L++      N + +   D ++    ++++       I N P++ G  +
Sbjct: 89  YLRENF----NGVRVQCGDFMEWLPVQYYSRG-----IMNPPFSHGQDI 128


>gi|168211092|ref|ZP_02636717.1| putative methyltransferase [Clostridium perfringens B str. ATCC
           3626]
 gi|170710862|gb|EDT23044.1| putative methyltransferase [Clostridium perfringens B str. ATCC
           3626]
          Length = 255

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             I E S        +EIG G G  T  LL  G   +  IE  +      K+    + N 
Sbjct: 27  HDIMEYSKLDRHKKALEIGIGTGQATLPLLKTGCD-LRAIELGENLAEFSKNKFKAYKNF 85

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
                 + L + FE F       +   N    I +   F+WI  +   P
Sbjct: 86  ------NILNIPFEDF-------KCDENTFDLIYSATAFHWIDENIGYP 121


>gi|220922043|ref|YP_002497344.1| protein-L-isoaspartate O-methyltransferase [Methylobacterium
           nodulans ORS 2060]
 gi|219946649|gb|ACL57041.1| protein-L-isoaspartate O-methyltransferase [Methylobacterium
           nodulans ORS 2060]
          Length = 666

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  +   +    G  V+E+GAG G     +L+  A +V  IE+        +    +
Sbjct: 64  PYIVAAMIALAEVEPGERVLEVGAGSGY-AAAVLSRIAERVYAIERHPSLGEQARRRFDK 122

Query: 93  H-PNRLEIIQDDALKVDFEK 111
                +E+   D  +   E 
Sbjct: 123 LGYGNIELRVGDGTRGWPEA 142


>gi|146338396|ref|YP_001203444.1| putative SAM-dependent methyltransferase [Bradyrhizobium sp.
           ORS278]
 gi|146191202|emb|CAL75207.1| putative SAM-dependent methyltransferases [Bradyrhizobium sp.
           ORS278]
          Length = 261

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  +   +       ++E+G G G  T    TLG   ++  +   +     ++  + 
Sbjct: 23  KALIDDVVSYADLKADDRILEVGCGTGQATLGFATLG-FSILATDPGPEMLRGARESLAG 81

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             N         L+  FE F       R+I
Sbjct: 82  FDNVA------FLETTFEAFPEHRPTFRLI 105


>gi|126740545|ref|ZP_01756232.1| hypothetical protein RSK20926_04237 [Roseobacter sp. SK209-2-6]
 gi|126718346|gb|EBA15061.1| hypothetical protein RSK20926_04237 [Roseobacter sp. SK209-2-6]
          Length = 271

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 12/101 (11%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR----KVIVIEKDQQFFPIL 86
           +D  +L   A +     G  V+E+G G G   QMLL LGAR    ++  +E    +  + 
Sbjct: 48  VDPVLL---AAAIPVHSGQKVLELGCGAG---QMLLCLGARVADLRLTGVELQPAYADLA 101

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +    ++   LEIIQ D   +  +          ++AN PY
Sbjct: 102 RRNGCENAQDLEIIQADLTHLPTD--LRQRQFDHVMANPPY 140


>gi|33594830|ref|NP_882473.1| putative methyltransferase [Bordetella parapertussis 12822]
 gi|33599101|ref|NP_886661.1| putative methyltransferase [Bordetella bronchiseptica RB50]
 gi|33564906|emb|CAE39851.1| Putative methyltransferase [Bordetella parapertussis]
 gi|33575147|emb|CAE30610.1| Putative methyltransferase [Bordetella bronchiseptica RB50]
          Length = 281

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILK--DI 89
            + + ++ E +      TVI++G+G G +    +   GAR  + ++ D +     +    
Sbjct: 50  DDAVARMLEMADVTAQDTVIDLGSGDGRIAIAAVRDRGARSAMGVDIDPERIAEARANAR 109

Query: 90  SSQHPNRLEIIQDDALKVDFEK 111
            +   +R+  +Q D    D  K
Sbjct: 110 KAGLADRVTFVQQDLFDTDISK 131


>gi|163848171|ref|YP_001636215.1| cyclopropane fatty acyl phospholipid synthase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526076|ref|YP_002570547.1| cyclopropane fatty acyl phospholipid synthase [Chloroflexus sp.
           Y-400-fl]
 gi|163669460|gb|ABY35826.1| Cyclopropane-fatty-acyl-phospholipid synthase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449955|gb|ACM54221.1| Cyclopropane-fatty-acyl-phospholipid synthase [Chloroflexus sp.
           Y-400-fl]
          Length = 394

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  IA       G+ V++IG G G   Q L       V+ I   ++   +  +     P 
Sbjct: 167 LDLIARKLDLQPGLRVLDIGCGWGGTAQYLAERYGVHVVGITVSKEQAALASERCRGLP- 225

Query: 96  RLEIIQDD 103
            +EI  +D
Sbjct: 226 -VEIRLED 232


>gi|315443978|ref|YP_004076857.1| tRNA (adenine-58-N(1)-) methyltransferase [Mycobacterium sp. Spyr1]
 gi|315262281|gb|ADT99022.1| tRNA (adenine-58-N(1)-) methyltransferase [Mycobacterium sp. Spyr1]
          Length = 277

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 6/83 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL        V   E            ++  
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPDGTVTSYEVRDDHAEHAIRNVETF 147

Query: 90  SSQHPNRLEIIQDDALKVDFEKF 112
             + P   E++  D    D  + 
Sbjct: 148 FGERPANWELVIADLSGYDGPEV 170


>gi|319761388|ref|YP_004125325.1| methyltransferase type 11 [Alicycliphilus denitrificans BC]
 gi|317115949|gb|ADU98437.1| Methyltransferase type 11 [Alicycliphilus denitrificans BC]
          Length = 334

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           +V+E+G GPG +TQ+L   G + V V+E D      L+      P  ++ ++ D
Sbjct: 31  SVLELGPGPGAMTQVLRARG-QAVTVVENDPAALQALR------PLGVQAVEAD 77


>gi|291438011|ref|ZP_06577401.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340906|gb|EFE67862.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 400

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +   +G TV+EIG G G  T +     G+  V  IE D +             +   +  
Sbjct: 123 AEVREGHTVLEIGTGTGYSTALACERLGSAGVTSIEVDARRLERAASALHDCGHTPTLAV 182

Query: 102 DD 103
            D
Sbjct: 183 AD 184


>gi|239929690|ref|ZP_04686643.1| hypothetical protein SghaA1_15787 [Streptomyces ghanaensis ATCC
           14672]
          Length = 402

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +   +G TV+EIG G G  T +     G+  V  IE D +             +   +  
Sbjct: 125 AEVREGHTVLEIGTGTGYSTALACERLGSAGVTSIEVDARRLERAASALHDCGHTPTLAV 184

Query: 102 DD 103
            D
Sbjct: 185 AD 186


>gi|225864789|ref|YP_002750167.1| putative methyltransferase [Bacillus cereus 03BB102]
 gi|225787228|gb|ACO27445.1| putative methyltransferase [Bacillus cereus 03BB102]
          Length = 247

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  IKNENWLQEVAKEVQEQIGYPFQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  N +EI   D  K++FE+ F+I
Sbjct: 76  VMFAKEHSTNDIEIHCADFYKINFEEKFDI 105


>gi|225680550|gb|EEH18834.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 355

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             + G  +IE+G+G G L+   L  LGAR V   ++D      ++D   ++      I  
Sbjct: 175 ALIAGKNIIELGSGTGFLSMYCLKCLGARSVTATDRDPALISSIQDCVMRNSLDSSRIHA 234

Query: 103 DALKVDFEKFFNISSPIRIIAN 124
           D       ++ N   P R+ ++
Sbjct: 235 DI-----WEWGNPFQPHRLSSS 251


>gi|222100464|ref|YP_002535032.1| Ribosomal protein L11 methyltransferase [Thermotoga neapolitana DSM
           4359]
 gi|254783321|sp|B9K9N3|PRMA_THENN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|221572854|gb|ACM23666.1| Ribosomal protein L11 methyltransferase [Thermotoga neapolitana DSM
           4359]
          Length = 264

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  V+++G G G L  +   LGA  V+ ++ D+Q   + K+   ++   + + + D 
Sbjct: 127 LKKGDRVVDVGCGTGILAIVAKKLGASYVMAVDVDEQAVEVAKENVQKNSVDVIVKRSDL 186

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           L          S    +   +  NI   +    +          S+ +L
Sbjct: 187 L----------SEVDGVFDLVVSNILAEIHLRLLEDVDRITHERSILIL 225


>gi|218437389|ref|YP_002375718.1| methyltransferase type 11 [Cyanothece sp. PCC 7424]
 gi|218170117|gb|ACK68850.1| Methyltransferase type 11 [Cyanothece sp. PCC 7424]
          Length = 277

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             IL ++ E +      +++EIG GPG  T  L   G + V  +E   +   I +     
Sbjct: 39  QKILDRVLELAQIPQNGSILEIGCGPGTATVDLAEKGFKMV-CLEPSLEACQIARQNCQN 97

Query: 93  HPN 95
           +P+
Sbjct: 98  YPH 100


>gi|196043604|ref|ZP_03110842.1| putative methyltransferase [Bacillus cereus 03BB108]
 gi|196025913|gb|EDX64582.1| putative methyltransferase [Bacillus cereus 03BB108]
          Length = 247

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  IKNENWLQEVAKEVQEQIGYPFQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  N +EI   D  K++FE+ F+I
Sbjct: 76  VMFAKEHSTNDIEIHCADFYKINFEEKFDI 105


>gi|145223652|ref|YP_001134330.1| tRNA (adenine-N(1)-)-methyltransferase [Mycobacterium gilvum
           PYR-GCK]
 gi|145216138|gb|ABP45542.1| tRNA (adenine-58-N(1)-) methyltransferase [Mycobacterium gilvum
           PYR-GCK]
          Length = 288

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 6/83 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL        V   E            ++  
Sbjct: 99  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPDGTVTSYEVRDDHAEHAIRNVETF 158

Query: 90  SSQHPNRLEIIQDDALKVDFEKF 112
             + P   E++  D    D  + 
Sbjct: 159 FGERPANWELVIADLSGYDGPEV 181


>gi|88860257|ref|ZP_01134895.1| hypothetical protein PTD2_14572 [Pseudoalteromonas tunicata D2]
 gi|88817455|gb|EAR27272.1| hypothetical protein PTD2_14572 [Pseudoalteromonas tunicata D2]
          Length = 230

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILK-DISSQHPNRLEII 100
           +      +V++IGAG G ++ ML        +  IE D +     K +I+      +++I
Sbjct: 30  ADVQSAQSVLDIGAGSGLISLMLKQRSPFISITAIEIDAKAALQAKSNIAHSQWPDIKVI 89

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
           + D L     + F++     +++N P+
Sbjct: 90  EHDILTYTSAQPFDL-----VVSNPPF 111


>gi|119355965|ref|YP_910609.1| biotin biosynthesis protein BioC [Chlorobium phaeobacteroides DSM
           266]
 gi|119353314|gb|ABL64185.1| biotin biosynthesis protein BioC [Chlorobium phaeobacteroides DSM
           266]
          Length = 260

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISS 91
           + + I     +     V+E+GAG G LT  LL      + V   D   +    I ++I  
Sbjct: 35  LARLICREEPTCRFERVLEVGAGTGALTAELLKRCRISLYVAN-DLVGESLRYISREIEP 93

Query: 92  QHPNRLEIIQDDA 104
             P     ++ D 
Sbjct: 94  WQPEAFRFLEGDV 106


>gi|332975773|gb|EGK12654.1| ribosomal protein L11 methyltransferase [Desmospora sp. 8437]
          Length = 341

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G  VI++G G G L+     LGA +V+ ++ D             +    R+ + Q 
Sbjct: 203 LQPGQKVIDVGCGSGVLSIAAARLGASEVLALDLDPVAVESTSQNIRLNGLEQRIAVRQG 262

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
           + L+   E          +I+N+   I  +   +         ++ +  ++ QKE
Sbjct: 263 NLLQGVRESADG------VISNILAEIIIQFTDDLPRVIHPGGWFIASGVIAQKE 311


>gi|307700827|ref|ZP_07637852.1| RNA methyltransferase, RsmD family [Mobiluncus mulieris FB024-16]
 gi|307613822|gb|EFN93066.1| RNA methyltransferase, RsmD family [Mobiluncus mulieris FB024-16]
          Length = 187

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 31  LDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
               + + I    +S G + G  V++I AG G L    L+ GA   ++++  +    +L+
Sbjct: 24  TSERVREAIFSRLDSQGVIAGARVLDIFAGSGALGLEALSRGATDAMLVDSARGAVQVLR 83

Query: 88  DISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             ++      R++++  DA++       N    +  I   PY + + +L   +S+
Sbjct: 84  ANAAALSAGERVQVVGADAVRFAASLGANERFDLVFID-PPYALDSGILDQVLSS 137


>gi|288921846|ref|ZP_06416062.1| Methyltransferase type 11 [Frankia sp. EUN1f]
 gi|288346824|gb|EFC81137.1| Methyltransferase type 11 [Frankia sp. EUN1f]
          Length = 282

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPN 95
           ++    G   G   +E GAG G++ + L  +   A +V+ +++D +F   L       P 
Sbjct: 36  RLVAGLGIGPGHRCLEAGAGTGSVARALAGVVGPAGQVLAVDRDTRFLDQL-------PA 88

Query: 96  RLEIIQDDALKVDFEK 111
           ++E+ + D +  D  +
Sbjct: 89  QVEVRRMDVMVDDLPR 104


>gi|240079913|ref|ZP_04724456.1| Protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|240122707|ref|ZP_04735663.1| Protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           PID332]
 gi|268596056|ref|ZP_06130223.1| protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268681308|ref|ZP_06148170.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268549844|gb|EEZ44863.1| protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268621592|gb|EEZ53992.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae PID332]
          Length = 218

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++A+        TV+EIG G G  T  LL   A +V+  + D       +  +  
Sbjct: 63  PKIVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGRVVSDDID----AERQKRAKA 117

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             + L +   D ++ +     +  +P   +
Sbjct: 118 VLDGLSLENIDYVQNNGLTELSAGAPFDAV 147


>gi|194097615|ref|YP_002000651.1| Protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|240015777|ref|ZP_04722317.1| Protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           FA6140]
 gi|240114866|ref|ZP_04728928.1| Protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           PID18]
 gi|240117069|ref|ZP_04731131.1| Protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           PID1]
 gi|260441319|ref|ZP_05795135.1| Protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|268600526|ref|ZP_06134693.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268602759|ref|ZP_06136926.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae PID1]
 gi|291044674|ref|ZP_06570383.1| protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|193932905|gb|ACF28729.1| Protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|268584657|gb|EEZ49333.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268586890|gb|EEZ51566.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae PID1]
 gi|291011568|gb|EFE03564.1| protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           DGI2]
          Length = 218

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++A+        TV+EIG G G  T  LL   A +V+  + D       +  +  
Sbjct: 63  PKIVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGRVVSDDID----AERQKRAKA 117

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             + L +   D ++ +     +  +P   +
Sbjct: 118 VLDGLSLENIDYVQNNGLTELSAGAPFDAV 147


>gi|297189899|ref|ZP_06907297.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718555|gb|EDY62463.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 275

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 19/106 (17%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFF-----PI 85
           D     +     G   G   +++GAG G + + LL   GA +V+ +++D +F      P 
Sbjct: 44  DATTTAR-LRELGVGPGWRCLDVGAGTGTVARALLREAGAAEVVAVDRDVRFLAAEPTPG 102

Query: 86  LKDISSQ------HPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L  + +        P R +++    +        ++  P R+I  L
Sbjct: 103 LTALEADITSDGFAPGRFDLVHARFV------LMHLPDPGRMIDRL 142


>gi|194747133|ref|XP_001956007.1| GF24990 [Drosophila ananassae]
 gi|190623289|gb|EDV38813.1| GF24990 [Drosophila ananassae]
          Length = 367

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 19/107 (17%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDL--NILKK--------IAESSGSLDGITVIEIGAGPGN 60
           ++     +I+  K +G   LLD   NI +         +   + + +G  +  +G G G 
Sbjct: 149 RSPFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGAENYEGKEICILGGGDGA 208

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
           L   LL    + V+++E D        ++  Q  N+ L +I  D L+
Sbjct: 209 LLYELLKENPKHVVMLEID--------ELVMQACNKYLSVICGDVLE 247


>gi|307706395|ref|ZP_07643206.1| methyltransferase domain protein [Streptococcus mitis SK321]
 gi|307618211|gb|EFN97367.1| methyltransferase domain protein [Streptococcus mitis SK321]
          Length = 193

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 16/138 (11%)

Query: 29  FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           FL D  +  KK+ +              G TV+++G G G L   L      +  +++ +
Sbjct: 27  FLTDAGVFSKKMVDFGSQLLLKCLEVNQGETVLDVGCGYGPLGLSLAKAYGVQATMVDIN 86

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +   + +  + ++     I Q +  +    KF        +I+N P   G +++   I 
Sbjct: 87  NRALDLARQNAERNKVAATIFQSNIYEQVEGKF------DHVISNPPIRAGKQVVHEIIE 140

Query: 140 -ADTWPPFWESLTLLFQK 156
            +  +      LT++ QK
Sbjct: 141 KSKDFLETGGDLTIVIQK 158


>gi|307108159|gb|EFN56400.1| hypothetical protein CHLNCDRAFT_35144 [Chlorella variabilis]
          Length = 369

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 27  QNFLLDLNILK------KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           QN L D   ++       I E+     G  V+++G G G L+      GAR V  +E   
Sbjct: 189 QNMLQD--YIRTGTYYASILENPADFRGKAVMDVGCGSGILSLFAAQAGARVVYAVEA-S 245

Query: 81  QFFPILKDISSQHP---NRLEIIQD 102
                 + +++ +P    R+ ++  
Sbjct: 246 DMAHHARQLAAANPALGQRIRVLHG 270


>gi|296269812|ref|YP_003652444.1| tRNA (adenine-N(1)-)-methyltransferase [Thermobispora bispora DSM
           43833]
 gi|296092599|gb|ADG88551.1| tRNA (adenine-N(1)-)-methyltransferase [Thermobispora bispora DSM
           43833]
          Length = 296

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I   +    G  V+E G G G LT  L+        V   E+   F  +      + 
Sbjct: 90  AAQIIAMADIFPGARVVEAGVGSGALTCHLIRAVGPEGSVTSYERRADFAEVATRNVERF 149

Query: 94  PN----RLEIIQDDA 104
                 +  ++  D 
Sbjct: 150 FGGPVKQWRLVAGDF 164


>gi|295661560|ref|XP_002791335.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226280897|gb|EEH36463.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 354

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             + G  +IE+G+G G L+   L  LGAR V   ++D      ++D   ++      I  
Sbjct: 174 ALIAGKNIIELGSGTGFLSMYCLKCLGARSVTATDRDPALISSIQDCVMRNSLDSSRIHA 233

Query: 103 DALKVDFEKFFNISSPIRIIAN 124
           D       ++ N   P R+ ++
Sbjct: 234 DI-----WEWGNPFQPHRLSSS 250


>gi|226364323|ref|YP_002782105.1| hypothetical protein ROP_49130 [Rhodococcus opacus B4]
 gi|226242812|dbj|BAH53160.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 215

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  +L  +  +        V+++ AG G L+      GA +V  ++  ++    ++  +
Sbjct: 13  HDTQLLAGVLAAEPLGPHSRVLDLCAGTGALSVAAAAAGAGRVTAVDVSRRAAISIRLNA 72

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
               +R+ +I+ D  +   E  F++     +++N PY
Sbjct: 73  LARGHRIRVIRGDLTEHVRENRFDV-----VVSNPPY 104


>gi|57233647|ref|YP_182287.1| UbiE/COQ5 family methlytransferase [Dehalococcoides ethenogenes
           195]
 gi|57224095|gb|AAW39152.1| methyltransferase, UbiE/COQ5 family [Dehalococcoides ethenogenes
           195]
          Length = 221

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 2/115 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +K  + +       +I++  G G  T+++   L   +V  ++         K+  +  P 
Sbjct: 43  RKFVDEANIQPRDNIIDMCCGTGATTRLVAGKLKDGQVTGVDLSPDMMARAKEKVTGLPA 102

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             +    D L    E  F+ +     +  +P  I    +            +  L
Sbjct: 103 VFQQASGDNLPFP-EGTFDKAFVSYGLHEMPTPIRHEAIKQIYKVLKPGGVFNVL 156


>gi|15889271|ref|NP_354952.1| cyclopropane-fatty-acyl-phospholipid synthase [Agrobacterium
           tumefaciens str. C58]
 gi|15157102|gb|AAK87737.1| cyclopropane-fatty-acyl-phospholipid synthase [Agrobacterium
           tumefaciens str. C58]
          Length = 410

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 19/118 (16%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQ 92
           L++IAE        +V+EIG G G L   L T     V  I       ++     +  S+
Sbjct: 183 LERIAEKLQLTGNNSVLEIGCGWGALAIHLATQQNADVTGITLSPSQLRWAENAAEKESK 242

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
              R+++   D                R +     NI +  +F  +    WP ++E L
Sbjct: 243 -AGRIDLRLQD---------------YRDVQGQFDNIVSVEMFEAVGESYWPSYFEML 284


>gi|85703617|ref|ZP_01034721.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217]
 gi|85672545|gb|EAQ27402.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217]
          Length = 330

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 30/52 (57%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G   + LL  GA +V+ +++D     + ++  +++ +RL ++Q +  ++D
Sbjct: 38  GAGGYARGLLEAGADQVVGVDRDPLALEMAREWGAEYGDRLRLVQGNFAQMD 89


>gi|312879753|ref|ZP_07739553.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase [Aminomonas
           paucivorans DSM 12260]
 gi|310783044|gb|EFQ23442.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase [Aminomonas
           paucivorans DSM 12260]
          Length = 285

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQ 101
               G +V+++G G G L+   L LGA  V+  + D      +++    +  R  + + +
Sbjct: 144 RVKSGDSVVDVGTGSGILSLGALKLGAASVVARDLDGAVLAEVEENLDLNDLRGAVRLEE 203

Query: 102 DDALK 106
            D L+
Sbjct: 204 GDLLR 208


>gi|302532328|ref|ZP_07284670.1| methyltransferase [Streptomyces sp. C]
 gi|302441223|gb|EFL13039.1| methyltransferase [Streptomyces sp. C]
          Length = 280

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKD-QQFFPILKDISSQHPNRLE 98
            + G   G   +E+GAG G + + L    G  +V+ +++D  +  P+          RL 
Sbjct: 51  RALGVGPGWRCLEVGAGTGTVARWLAEEAGVDEVVALDRDTSRLAPL-------AGPRLR 103

Query: 99  IIQDDALKVDFEK 111
           ++ DD  ++D E 
Sbjct: 104 VLTDDLARLDDEA 116


>gi|311742503|ref|ZP_07716312.1| tRNA (adenine-N(1)-)-methyltransferase [Aeromicrobium marinum DSM
           15272]
 gi|311314131|gb|EFQ84039.1| tRNA (adenine-N(1)-)-methyltransferase [Aeromicrobium marinum DSM
           15272]
          Length = 301

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ 92
             +I   +    G  V+E GAG G+LT  LL        +   E  + F  + +    Q
Sbjct: 91  AAQIVTMADIFPGARVVEAGAGSGSLTAYLLRAVGPDGHLGSYELREDFAEVARRNVGQ 149


>gi|289662081|ref|ZP_06483662.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 218

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           ++ ++     G  V+E+G G G  T  L  L AR+V+ +E D 
Sbjct: 70  RMLQALDLQPGEDVLEVGTGSGFATACLAAL-AREVLSLEIDP 111


>gi|223954224|gb|ACN29714.1| carboxylate O-methyltransferase [Nonomuraea longicatena]
          Length = 285

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILK-DISS 91
           + +++ E  G   G  ++++G G G +T  L        +V  I+        L+  +++
Sbjct: 32  VAERLVELLGIEKGQQILDVGCGRGAVTFPLAEAVGPTGRVFGIDLSAGMVEALRASVAA 91

Query: 92  QHPNRLEIIQDD 103
                +E+   D
Sbjct: 92  AGVPNIEVRHMD 103


>gi|223044124|ref|ZP_03614163.1| caffeoyl-CoA O-methyltransferase [Staphylococcus capitis SK14]
 gi|222442518|gb|EEE48624.1| caffeoyl-CoA O-methyltransferase [Staphylococcus capitis SK14]
          Length = 211

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPI 85
           Q  ++D   L  I +         ++EIG   G  +    ++     V  IE+++    +
Sbjct: 30  QVPIVDKLTLDMIKQLIRMNHTKNILEIGTAIGYSSMQFSSVANDIHVTTIERNEDMIAL 89

Query: 86  LKDISSQ--HPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            ++   +  +  ++ +I+ +AL+      D E         +  +   + + T LL  
Sbjct: 90  ARNYFQEYGYNEQIRLIEGNALETYQQVNDREYDMIFIDAAKAQSKKFFELYTPLLRK 147


>gi|154492216|ref|ZP_02031842.1| hypothetical protein PARMER_01850 [Parabacteroides merdae ATCC
          43184]
 gi|154087441|gb|EDN86486.1| hypothetical protein PARMER_01850 [Parabacteroides merdae ATCC
          43184]
          Length = 194

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           D   L  I   +G   G+ +++IG G G L   LL     +++ ++         +   
Sbjct: 21 HDPEKLNDILRRTGLRKGLRILDIGCGTGVLESYLLPYSPLQIVGVDISPGMIEKARSKY 80

Query: 91 S 91
          +
Sbjct: 81 A 81


>gi|317120980|ref|YP_004100983.1| tRNA (adenine-N(1)-)-methyltransferase [Thermaerobacter marianensis
           DSM 12885]
 gi|315590960|gb|ADU50256.1| tRNA (adenine-N(1)-)-methyltransferase [Thermaerobacter marianensis
           DSM 12885]
          Length = 385

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 21/106 (19%)

Query: 2   TMNNKSHSLKTILSHYKI-IPK-------KYMGQNFLLDLNILKKIAESSGSLDGITVIE 53
           +   +   L+  L  Y + +P+       K +GQ           I   S    G  V+E
Sbjct: 121 STGGRLWVLRPTLEEYVLAMPRRTQVIYPKDLGQ-----------IVVRSNLGPGGRVLE 169

Query: 54  IGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRL 97
            G G G  T  LL     A +VI  E+  +F  + ++   +    L
Sbjct: 170 AGVGSGATTLALLRAVGPAGRVISYERRPEFARLARENVERFFGSL 215


>gi|290508240|ref|ZP_06547611.1| O-methyltransferase [Klebsiella sp. 1_1_55]
 gi|289777634|gb|EFD85631.1| O-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 245

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD--ISSQHPNRLE 98
           +       V++IGAG G L  ML        +V  +E D++     ++  ++S   +R+E
Sbjct: 40  APIAGVKHVLDIGAGSGLLALMLAQRTGHDVQVDAVELDEEAAAQARENALASPWSSRIE 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           I Q D       +         II+N P+
Sbjct: 100 ICQADI---HQWQPSQTRRYELIISNPPF 125


>gi|317404647|gb|EFV85044.1| methyltransferase small [Achromobacter xylosoxidans C54]
          Length = 376

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           +  +A +     G    +IG G G L  +L   G ++VI  + D +     ++   +   
Sbjct: 187 IDLVARTPMPR-GSVAFDIGTGTGVLAAVLARRGGKRVIATDMDPRALACARENLERLGL 245

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             ++E+ Q D         F        + N P+
Sbjct: 246 SKQVEVAQAD--------LFPEGRVSLAVCNPPW 271


>gi|297158986|gb|ADI08698.1| protein-L-isoaspartate-O-methyltransferase [Streptomyces
           bingchenggensis BCW-1]
          Length = 342

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 21/185 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           I+ ++ +     DG   +EIG G G N   +   LG   V  +E D              
Sbjct: 53  IVFRMLDLLNLADGCRALEIGTGTGWNAGLLSHRLGPGLVTTVEVDPVLAQQAARRLKDV 112

Query: 94  PNRLEIIQDD-ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES--- 149
                +I  D A+       F+       + ++P          W+          +   
Sbjct: 113 GLEPTVISGDGAVNHAAAASFDRVIATCSVRDVPRA--------WVEQTRPGGVILTPWE 164

Query: 150 ----LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
                  L +  V  +  A      +    ++   RT   +  D+      P    T ++
Sbjct: 165 SPWFCYGLLRLTVDGQGRASGWFSPHSAFMLMRNQRTDLRIYRDVVRDEHVP----TESI 220

Query: 206 IHFIP 210
               P
Sbjct: 221 ARLSP 225


>gi|255073283|ref|XP_002500316.1| protein arginine methyltransferase [Micromonas sp. RCC299]
 gi|226515578|gb|ACO61574.1| protein arginine methyltransferase [Micromonas sp. RCC299]
          Length = 451

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILK------KIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            +Y +IP++   QN L D   ++       I E++       V+++GAG G L+      
Sbjct: 82  RYYGLIPQQ---QNMLQDA--VRTGTYFTAILENACDFKDKVVMDVGAGSGILSFFAAMA 136

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           GAR+V  +E           +   +P   ++I
Sbjct: 137 GARRVYAVEA-SAMSEHCAKLLEGNPRLRDVI 167


>gi|289572915|ref|ZP_06453142.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289537346|gb|EFD41924.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 140

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 36  LKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-- 92
           + +I  E      G  V EIG GPG  T  LL     +V  +E       I    +++  
Sbjct: 37  VNRIAVELLAPGPGERVCEIGFGPGR-TLGLLAAAGAQVSGVEVSTTMIAIAAHHNAKAI 95

Query: 93  HPNRLEIIQDDALKVDFEKF 112
               + +   D + +     
Sbjct: 96  AAGLISLYHGDGVTLPVADH 115


>gi|218671106|ref|ZP_03520777.1| probable SAM-dependent methyltransferase protein [Rhizobium etli
           GR56]
          Length = 236

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLE 98
            + +G  DG  V+++G G G+LT  L    + +++  I+    F             R+ 
Sbjct: 22  IDFAGLADGDRVLDVGCGTGSLTFTLAEKPSLQEIAAIDYSPVFVEAAMRR--NTDPRIA 79

Query: 99  IIQDDALKVDFEK-FFNISSPIRIIANLP 126
           I Q DA  + FE   F+ +  + ++  +P
Sbjct: 80  IRQADACALPFEDSRFDRAMSLLVLHFVP 108


>gi|183983093|ref|YP_001851384.1| RNA methyltransferase [Mycobacterium marinum M]
 gi|183176419|gb|ACC41529.1| RNA methyltransferase [Mycobacterium marinum M]
          Length = 280

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD----I 89
             +I        G  V+E GAG G LT  LL       +VI  E+        +      
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPQGQVISYEQRADHAEHARRNVTNF 147

Query: 90  SSQHPNRLEIIQDDA 104
             + P+  ++I  D 
Sbjct: 148 YGEAPDNWQLIISDI 162


>gi|163782706|ref|ZP_02177702.1| hypothetical protein HG1285_15261 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881827|gb|EDP75335.1| hypothetical protein HG1285_15261 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 237

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
           G      V E+GAG G L+ ++      +V  +E+D + F +L++    ++  + ++ ++
Sbjct: 38  GIKRNTRVAELGAGFGFLSLVIARKFGCEVFALERDDKLFHLLEENVRQNELGDLVKPVK 97

Query: 102 DDALKVDFEKFFNISSPIRIIANLPY 127
            D  +    + F       ++ N P+
Sbjct: 98  VDIRE--HRERFRRGEFNAVVTNPPF 121


>gi|15922284|ref|NP_377953.1| hypothetical protein ST1967 [Sulfolobus tokodaii str. 7]
 gi|15623073|dbj|BAB67062.1| 244aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 244

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
            G  V++IGAG G+ +    T+GA++V+ +E D++   ++++    +  N + ++     
Sbjct: 102 KGKRVLDIGAGVGDSSIYFSTMGAKEVVAVEIDKKKIELMRENLRTNGINNVIVVDKGVG 161

Query: 106 KVDFEKFFNISSPIR 120
            VD E F +    I+
Sbjct: 162 TVDNENFISWERLIK 176


>gi|124266234|ref|YP_001020238.1| putative L-isoaspartate O-methyltransferase [Methylibium
           petroleiphilum PM1]
 gi|124259009|gb|ABM94003.1| putative L-isoaspartate O-methyltransferase [Methylibium
           petroleiphilum PM1]
          Length = 217

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ F+L   +  ++ +         V+E+G G G +   LL   AR+V+ +E      P 
Sbjct: 57  GQ-FMLSPKVEARLLQELAVHKHERVLEVGTGSGFM-AALLGHKAREVLSLEI----RPA 110

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           L   +  +  R  ++  +  + D  +      P  +IA
Sbjct: 111 LALQARINLQRAAVVNVEVREADGSRATATDGPFDVIA 148


>gi|331270482|ref|YP_004396974.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Clostridium
           botulinum BKT015925]
 gi|329127032|gb|AEB76977.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum BKT015925]
          Length = 188

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 16/150 (10%)

Query: 38  KI--AESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQH- 93
           +I         +   +++IG+G G+++  L       +VI IEK+Q+   ++     +  
Sbjct: 22  RILSISKMNINENSRILDIGSGTGSISIQLAKISKNGEVIAIEKEQKAIDLINKNKEKFE 81

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIR---------IIANLPYNIGT--RLLFNWISADT 142
            N LE+++ +AL+V        ++            II N    I T  R++ N+I+ + 
Sbjct: 82  ANNLEVVKGEALEVYDHIDGEFNAIFIGGSGGNIEEIIRNYHNKISTKGRMVLNFITINN 141

Query: 143 WPPFWESL-TLLFQKEVGERITAQKNSPHY 171
                E+L  + ++ E  E   ++     Y
Sbjct: 142 LYKALETLKKMDYKPEFIEVSISRSFKNTY 171


>gi|220910008|ref|YP_002485319.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219866619|gb|ACL46958.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 254

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +      G  ++++G G G+LT  + + GA  V+ I+ D          + QH   L   
Sbjct: 27  QLLDPQSGEDILDLGCGTGHLTAKIASSGA-SVLGIDADPAMIAA----AQQHYPTLNFA 81

Query: 101 QDDALKVDFEKFFN 114
             DA   +  +  +
Sbjct: 82  IADARTFEPPQPLD 95


>gi|158337433|ref|YP_001518608.1| methyltransferase [Acaryochloris marina MBIC11017]
 gi|158307674|gb|ABW29291.1| methyltransferase, putative [Acaryochloris marina MBIC11017]
          Length = 269

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           +++ E+        V +IGAG G ++ +M   L   KV+ ++   +   IL     +   
Sbjct: 104 RRLVEALNLSPTDVVADIGAGTGYMSFRMTPFLPEGKVLAVDIQPEMVEILNYFKEERQV 163

Query: 95  NRLEIIQDD 103
           + L+ I  +
Sbjct: 164 DNLDAILGN 172


>gi|150377782|ref|YP_001314377.1| methyltransferase type 11 [Sinorhizobium medicae WSM419]
 gi|150032329|gb|ABR64444.1| Methyltransferase type 11 [Sinorhizobium medicae WSM419]
          Length = 143

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEK 78
          I ++     G+ V+EIG GPG + + +   +G   V+ I++
Sbjct: 12 IVDALPLRPGMRVLEIGCGPGAMAREIAGRIGGGHVLAIDR 52


>gi|41406297|ref|NP_959133.1| hypothetical protein MAP0199 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394645|gb|AAS02516.1| hypothetical protein MAP_0199 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 190

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G   +EIG G G      L   A  +  +E D      L+     + +R  +IQ 
Sbjct: 35  GSRTLEIGPGYGATLSAPLDRTA-SLTAVELDPVMADRLQRR---YGDRARVIQA 85


>gi|320011761|gb|ADW06611.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 463

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQH 93
           L+ I    G   G  +++IG G G+LT         +V  +   ++    ++        
Sbjct: 192 LELICRKLGLTPGARLLDIGCGWGSLTLHAAARHGVRVTAVTLAREQAAYVRGQVTERGL 251

Query: 94  PNRLEIIQDD 103
            + +E+   D
Sbjct: 252 EDLVEVHCCD 261


>gi|294627174|ref|ZP_06705762.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294666572|ref|ZP_06731812.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292598607|gb|EFF42756.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292603647|gb|EFF47058.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 218

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           ++ ++     G  V+E+G G G  T  L  L AR+V+ +E D 
Sbjct: 70  RMLQALDLQPGEDVLEVGTGSGFATACLAAL-AREVLSLEIDP 111


>gi|225851286|ref|YP_002731520.1| hypothetical protein PERMA_1756 [Persephonella marina EX-H1]
 gi|225645830|gb|ACO04016.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 152

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           NIL  I        G + +++ AG G +    +  GA +VI +EKD++    +K   S++
Sbjct: 17  NILYDI-------TGESFLDLFAGTGEIGLTAVKKGASQVIFVEKDRKRAEQIKKKVSKY 69

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
               ++I  DA+K    K +   +   I A+ PY+
Sbjct: 70  TQNFKVITADAIKF--LKNYKKEAFDIIFADPPYD 102


>gi|209546742|ref|YP_002278660.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537986|gb|ACI57920.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 297

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDIS 90
            ++  ++ +      G  +  IGAG G  + +L  L   A  V  +E D       +   
Sbjct: 90  PSLHARLLDELDVQIGDRIAHIGAGTGYYSAILAELVGAAGHVYAVEMDPDLAGHAQAAL 149

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           +   N + +I  D  +   ++   I     +
Sbjct: 150 ADRAN-VSVIAADGNQWPQQEVDAIYVNFAV 179


>gi|331265588|ref|YP_004325218.1| methyltransferase small domain superfamily protein [Streptococcus
           oralis Uo5]
 gi|326682260|emb|CBY99877.1| methyltransferase small domain superfamily protein [Streptococcus
           oralis Uo5]
          Length = 196

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 64/162 (39%), Gaps = 4/162 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL +L + + +      L    +++ G G G L   L    A+ V +++  ++     + 
Sbjct: 19  FLANL-VCQAVEAQIDLLSDKKILDFGGGTGLLALPLAQQ-AKSVTLVDISEKMLEQARL 76

Query: 89  ISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPF 146
            + Q   + ++ ++ D L    E+ F++    R++ ++P    T  +F++ +  +     
Sbjct: 77  KAEQQDIKNIQFLEQDLLVNPLEQQFDLIVVSRVLHHMPNLDATLAMFHYHLRENGQVLI 136

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
            + +         E    +     +G  S+ +     A  +F
Sbjct: 137 ADFVKTDTNHHGFELPELETKLDQFGFSSIDSQILYSAEGLF 178


>gi|300113212|ref|YP_003759787.1| Protein-l-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosococcus watsonii C-113]
 gi|299539149|gb|ADJ27466.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosococcus watsonii C-113]
          Length = 212

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 26  GQNFLLDLNILK-KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           GQ  L    I++ ++ ++    +  +V+EIG G G LT ++  L A  V  ++     FP
Sbjct: 57  GQVML--PPIIEGRLLQALDLKESESVLEIGTGTGYLTTVMAGL-AGHVTSVDI----FP 109

Query: 85  ILKDISSQHPNRLEIIQDDA 104
            L+  S Q    + +   DA
Sbjct: 110 ELRRFSEQPLANISLEVGDA 129


>gi|289667830|ref|ZP_06488905.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 218

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           ++ ++     G  V+E+G G G  T  L  L AR+V+ +E D 
Sbjct: 70  RMLQALDLQPGEDVLEVGTGSGFATACLAAL-AREVLSLEIDP 111


>gi|260464051|ref|ZP_05812246.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Mesorhizobium opportunistum WSM2075]
 gi|259030222|gb|EEW31503.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Mesorhizobium opportunistum WSM2075]
          Length = 284

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 3/74 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRL 97
                   G  V  IGAG G  T +L  L      V   E D +   + +     + N  
Sbjct: 89  IGKLAPKPGEAVSHIGAGTGYYTALLARLVSPDGTVTAFELDGRLADLARKNLEAYGNA- 147

Query: 98  EIIQDDALKVDFEK 111
             +  DA+      
Sbjct: 148 TAVHGDAVTAPLPP 161


>gi|254419187|ref|ZP_05032911.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3]
 gi|196185364|gb|EDX80340.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3]
          Length = 322

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ E+     G  VI+   G G  T+ +L  GA +VI +++D    P    ++  
Sbjct: 8   PVLLAEVIEALKPGPGDVVIDATFGAGGYTRAILATGA-QVIGLDRDPTVQPHADAVAKD 66

Query: 93  HPNRLEII 100
            P + ++I
Sbjct: 67  FPGQFQLI 74


>gi|160879029|ref|YP_001557997.1| methyltransferase type 12 [Clostridium phytofermentans ISDg]
 gi|160427695|gb|ABX41258.1| Methyltransferase type 12 [Clostridium phytofermentans ISDg]
          Length = 206

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            K          ++V+EIG G G L   +L LG ++ I I+  Q+     KD    + N 
Sbjct: 38  DKFLSELKLNQTLSVLEIGVGTGRLALRVLKLGCKRFIGIDLSQKTIDRAKDNLRDYSN- 96

Query: 97  LEIIQDDALK 106
             +I  D L 
Sbjct: 97  YTLIVGDYLD 106


>gi|50954547|ref|YP_061835.1| SAM-dependent methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951029|gb|AAT88730.1| SAM-dependent methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 339

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I   +    G TV+E G G G L+  LL       +++  E+ ++F  + +D ++  
Sbjct: 97  AAQILALADIFPGATVVEAGVGSGALSLWLLRAIGPEGRLLSFERREEFAEVARDNAASF 156

Query: 94  ----PNRLEIIQDDA 104
               P    +   D 
Sbjct: 157 LGRDPENWTVAVGDV 171


>gi|84624030|ref|YP_451402.1| hypothetical protein XOO_2373 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|122879195|ref|YP_201148.6| hypothetical protein XOO2509 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367970|dbj|BAE69128.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 206

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L+   ++     +++++Q+D
Sbjct: 55  LPGARVLDLFAGSGALGLEAVSRGAGHATLIERDSSLVQRLRAHVTRLDAATQVQVLQED 114

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           A++   E+     + I  +           +   + A      W
Sbjct: 115 AVR-WLERAPAALADIVFVDPPFAACLWPAVLERLPAHVAADAW 157


>gi|332709412|ref|ZP_08429373.1| demethylmenaquinone methyltransferase [Lyngbya majuscula 3L]
 gi|332351671|gb|EGJ31250.1| demethylmenaquinone methyltransferase [Lyngbya majuscula 3L]
          Length = 232

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 18/95 (18%)

Query: 24  YMGQNFLLDLNILKKI-----AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVI 76
             GQ+         +I      + +    G T +++  G G+LT++L        KV  +
Sbjct: 27  SWGQH---------RIWKLMTVKWAEPKPGDTCVDLCCGSGDLTRLLAEKVGTQGKVYGV 77

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           +   Q   I K  SS+    +E ++ D L + F  
Sbjct: 78  DFAPQMLAIAKQKSSE--PHIEWVEADVLDLPFAD 110


>gi|294055059|ref|YP_003548717.1| Cyclopropane-fatty-acyl-phospholipid synthase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614392|gb|ADE54547.1| Cyclopropane-fatty-acyl-phospholipid synthase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 412

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94
           ++++ + +G   G  V+EIG+G G L       GA+ K I + K+Q+ + +     +   
Sbjct: 184 IERLLDLAGVGPGDWVLEIGSGWGALAIAAARRGAQVKTITLSKEQRDYAMRAVAQAGLS 243

Query: 95  NRLEIIQDDALKVD 108
           + +E+  +D  + D
Sbjct: 244 DLVEVALEDYREQD 257


>gi|262202383|ref|YP_003273591.1| tRNA (adenine-N(1)-)-methyltransferase [Gordonia bronchialis DSM
           43247]
 gi|262085730|gb|ACY21698.1| tRNA (adenine-N(1)-)-methyltransferase [Gordonia bronchialis DSM
           43247]
          Length = 276

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL     + +V+  E            ++  
Sbjct: 88  AAQIVVEGDVFPGARVLEAGAGSGALTCSLLRAVGESGEVVSYEIRSDHAEHAVRNVETF 147

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFN 114
               P+   ++ +D  ++  ++ F+
Sbjct: 148 FGGRPDNWNLVVEDLARLPTDERFD 172


>gi|223933053|ref|ZP_03625046.1| conserved hypothetical protein [Streptococcus suis 89/1591]
 gi|223898240|gb|EEF64608.1| conserved hypothetical protein [Streptococcus suis 89/1591]
          Length = 317

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPIL 86
           FL+D  +             +TV+EIG+G GNL Q +L    + +  + IE D     + 
Sbjct: 100 FLVDQLV---------PTQKVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLS 150

Query: 87  KDISSQHPNRLEIIQDDALK 106
             I+      +   Q DA++
Sbjct: 151 ASIADVMQADISFAQGDAVR 170


>gi|320102368|ref|YP_004177959.1| type 11 methyltransferase [Isosphaera pallida ATCC 43644]
 gi|319749650|gb|ADV61410.1| Methyltransferase type 11 [Isosphaera pallida ATCC 43644]
          Length = 266

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 33  LNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
               +++    G     G+ V+++G+G G     L      +V  ++  ++   + ++  
Sbjct: 40  PETTERLCALLGNALQPGVRVLDVGSGLGGAAFHLAERFGAEVTGVDLAEEMIALTRERL 99

Query: 91  SQ--HPNRLEIIQDDALKVDFE 110
           +      ++  +  D +  D  
Sbjct: 100 ADRKTSEKVRFLLGDVMTADLP 121


>gi|21244187|ref|NP_643769.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21109823|gb|AAM38305.1| L-isoaspartate protein carboxylmethyltransferase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 218

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           ++ ++     G  V+E+G G G  T  L  L AR+V+ +E D 
Sbjct: 70  RMLQALDLQPGEDVLEVGTGSGFATACLAAL-AREVLSLEIDP 111


>gi|27380462|ref|NP_771991.1| protein-L-isoaspartate O-methyltransferase [Bradyrhizobium
           japonicum USDA 110]
 gi|27353626|dbj|BAC50616.1| protein-L-isoaspartate O-methyltransferase [Bradyrhizobium
           japonicum USDA 110]
          Length = 254

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + + +       V+E+G G G     +L   ARKV  IE   Q           
Sbjct: 105 PYIVALMTQLAEVAPDHVVLEVGTGSGY-QAAILAQLARKVCSIEIIPQLAETAAKTLRD 163

Query: 93  HP-NRLEIIQDDALKVDFEK 111
              + + +   D      E 
Sbjct: 164 LAYDNVSVRLGDGYDGWPEC 183


>gi|322805255|emb|CBZ02819.1| cobalt-precorrin-6y C15-methyltransferase [decarboxylating]
           [Clostridium botulinum H04402 065]
          Length = 192

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 38  KI--AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94
           +I         +   V+++GAG G+++    T+  + +V  IEKD++   I+K    +  
Sbjct: 22  RILSISKMNLEENSKVLDVGAGTGSVSIQAATICKKGRVFAIEKDEEALDIIKKNKEKFN 81

Query: 95  -NRLEIIQDDALKVDFE 110
              L+II+ +AL+V+  
Sbjct: 82  CGNLKIIKGEALEVEES 98


>gi|294670426|ref|ZP_06735308.1| hypothetical protein NEIELOOT_02145 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307890|gb|EFE49133.1| hypothetical protein NEIELOOT_02145 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 218

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             I+ ++ +         V+EIG G G  + +L  L A +V+ ++ D +
Sbjct: 63  PKIVARMIQGLALKKTDKVLEIGTGSGYASAVLSKLAA-EVVTVDIDPE 110


>gi|213964420|ref|ZP_03392620.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
           SK46]
 gi|213952613|gb|EEB63995.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
           SK46]
          Length = 188

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 11/100 (11%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA- 104
           L+G  V+++ AG G L     + GAR V+++E D      ++       N   +   D  
Sbjct: 43  LEGTRVLDLFAGSGALGLEAASRGARSVVLVENDPNAIAAIEK------NIRTVGHPDVA 96

Query: 105 ---LKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWISA 140
              +KV          P  R+IA+ PY +    +   + A
Sbjct: 97  VSPMKVSSYLAGAPGEPFDRVIADPPYELAGEAVTEMLEA 136


>gi|328882033|emb|CCA55272.1| Protein-L-isoaspartate O-methyltransferase [Streptomyces venezuelae
           ATCC 10712]
          Length = 387

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79
            D   +  + E+     G  V+EIG G G  T ++   LG   V  +E D
Sbjct: 100 TDPATVVGMIETLDLARGHRVLEIGTGTGYSTALMCHYLGEDNVTTVEVD 149


>gi|261402295|ref|YP_003246519.1| tRNA (adenine-N(1)-)-methyltransferase [Methanocaldococcus
           vulcanius M7]
 gi|261369288|gb|ACX72037.1| tRNA (adenine-N(1)-)-methyltransferase [Methanocaldococcus
           vulcanius M7]
          Length = 275

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD 88
           I   +G  +G TV+E G G G LT  L     +  KVI  +   +F  + + 
Sbjct: 79  IIARAGIREGETVVEAGTGSGALTMYLSNAVGKTGKVITYDIRPEFAKVARK 130


>gi|271969629|ref|YP_003343825.1| SAM-dependent methyltransferase [Streptosporangium roseum DSM
           43021]
 gi|270512804|gb|ACZ91082.1| SAM-dependent methyltransferase, putative [Streptosporangium roseum
           DSM 43021]
          Length = 258

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            E      G  ++++G G G LT  + + GAR   V+  D     I +   +Q+P  L+ 
Sbjct: 31  VELLDPQPGERIVDLGCGTGVLTAEITSRGAR---VLGIDGSSAMI-EKALAQYPG-LDF 85

Query: 100 IQDDALKVDFEKFFN 114
           I  D       + ++
Sbjct: 86  IVGDGRDFTVAQPYD 100


>gi|213962716|ref|ZP_03390977.1| methyltransferase type 11 [Capnocytophaga sputigena Capno]
 gi|213954711|gb|EEB66032.1| methyltransferase type 11 [Capnocytophaga sputigena Capno]
          Length = 231

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 10/137 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +  L G TV+++GA  GNLT  L      +V  I+  ++      +        + + Q 
Sbjct: 27  ADELQGHTVLDVGAATGNLTAYL-NSQGYEVTAIDLSERLIAKAAEKG------ITVQQR 79

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           + L +D    F+    I  I N   ++ ++          +    +   L+ Q    E+ 
Sbjct: 80  NMLTIDELSTFD---NIVCIGNTLPHLDSKASIQLFLQKVYGQLTQEGKLVLQLVNFEKY 136

Query: 163 TAQKNSPHYGRLSVLTG 179
            AQ+   + G L ++  
Sbjct: 137 FAQQQGDYLGNLPLIAN 153


>gi|198434782|ref|XP_002127192.1| PREDICTED: similar to tRNA methyltransferase 12 homolog [Ciona
           intestinalis]
          Length = 294

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD--IS 90
           NI +KI  ++ + DG  VI++ AG G  T  LL    AR V   E +      LK   + 
Sbjct: 123 NITEKIRMANLNCDGEIVIDMFAGIGYFTLPLLVHSKARFVHACEWNPDSVTALKANLLL 182

Query: 91  SQHPNRLEIIQDD 103
           ++  ++ +I + D
Sbjct: 183 NKVESKCKIYEGD 195


>gi|119470898|ref|ZP_01613482.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Alteromonadales bacterium TW-7]
 gi|119445920|gb|EAW27200.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Alteromonadales bacterium TW-7]
          Length = 402

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 21/152 (13%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           LK+I E      G +VIEIG G G       T     V       +    + +   +   
Sbjct: 161 LKRICEQVELQPGDSVIEIGTGWGAFAIYAATHYDCHVTTTTISDEQHDFVAEKIKELGL 220

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            N++ +     LK+D+         +  I               +  +  P F+     L
Sbjct: 221 ENKITL-----LKLDYRLLTGKYDKLVSIEM----------IEAVGHEYLPSFFTQCGSL 265

Query: 154 FQKEVGERITA----QKNSPHYGRLSVLTGWR 181
            + +    I A     +   HY + S      
Sbjct: 266 LKDDGAMLIQAITISDQRYKHYLKNSDFIQQY 297


>gi|302391327|ref|YP_003827147.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Acetohalobium arabaticum DSM 5501]
 gi|302203404|gb|ADL12082.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Acetohalobium arabaticum DSM 5501]
          Length = 234

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 67/194 (34%), Gaps = 26/194 (13%)

Query: 1   MTMNNKSHSL-KTILSHYKIIPKK--YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           M   N+ + + ++I   Y ++  K    G    LD    + +A+ +    G  V+++G G
Sbjct: 1   MNKENRVYKIFQSIALKYDLM-NKLMSFG----LDNRWRRLVAKQAALKPGDKVLDVGGG 55

Query: 58  PGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFF 113
            G L+  L  L      V+ ++  +      +     H   +RLE   D+A+        
Sbjct: 56  TGRLSLELAKLLNDNGSVVCMDFSENMLQKAEKDLKDHRCYDRLEFKVDNAMD------- 108

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
                I   AN    + +  +   +   +         +     V     A+  S  Y  
Sbjct: 109 -----ISFAANTFDAVTSAWVLRNVDDISQVLAEMKRVVKPGGRVVSLDLAKPKSELYN- 162

Query: 174 LSVLTGWRTKATMM 187
            S+ + +  K   +
Sbjct: 163 -SLYSFYLAKIIPV 175


>gi|312115017|ref|YP_004012613.1| methyltransferase type 11 [Rhodomicrobium vannielii ATCC 17100]
 gi|311220146|gb|ADP71514.1| Methyltransferase type 11 [Rhodomicrobium vannielii ATCC 17100]
          Length = 255

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NR 96
           A +  +  G  V+E G G G  +  LL       V  +E D     + ++ ++++    +
Sbjct: 36  AAACPAQAGERVLEAGCGAGAASLCLLARVPGVSVTGVEIDAGLAALARENATENDLAAQ 95

Query: 97  LEIIQDDALKVDFEKFFNIS----SPIRIIANLPY 127
             I   D L   + +         +   +IAN P+
Sbjct: 96  FTIANAD-LTASWTELEAAGLFREAYDHVIANPPF 129


>gi|262831243|sp|C4LCN4|TRMN6_TOLAT RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
          Length = 237

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP--NRLEIIQDDAL 105
            +++IG G G L  ML    A++V    +E D+      ++  +  P   R+ +I+ D  
Sbjct: 40  RILDIGTGTGILALMLAQRTAQQVQIDAVELDKDAVKQAEENINASPWRERIRVIRHDIR 99

Query: 106 KVDFEKFFNISSPIRIIANLPYNI 129
                 +        II+N PY +
Sbjct: 100 TFQAPHY------DLIISNPPYFV 117


>gi|260809889|ref|XP_002599737.1| hypothetical protein BRAFLDRAFT_131043 [Branchiostoma floridae]
 gi|229285018|gb|EEN55749.1| hypothetical protein BRAFLDRAFT_131043 [Branchiostoma floridae]
          Length = 272

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK--DQQFFPILKDISSQH 93
           + +  +         V+++G+G G   + L       V  +E   D      +       
Sbjct: 51  VDEAIQRFNIGKDTRVLDVGSGIGGPARYLAWKTGCHVTALELQHDHHVTGEVLTKRCNL 110

Query: 94  PNRLEIIQDDALKVD 108
             R+  +  D + +D
Sbjct: 111 SERVRHVCGDIMDID 125


>gi|260809875|ref|XP_002599730.1| hypothetical protein BRAFLDRAFT_131039 [Branchiostoma floridae]
 gi|229285011|gb|EEN55742.1| hypothetical protein BRAFLDRAFT_131039 [Branchiostoma floridae]
          Length = 1712

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 36   LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK--DQQFFPILKDISSQH 93
            + +  +         V+++G+G G   + L       V  +E   D      +       
Sbjct: 1491 VDEAIQRFNIGKDTRVLDVGSGIGGPARYLAWKTGCHVTALELQHDHHVTGEVLTKRCNL 1550

Query: 94   PNRLEIIQDDALKVD 108
              R+  +  D + +D
Sbjct: 1551 SERVRHVCGDIMDID 1565


>gi|153009781|ref|YP_001370996.1| type 12 methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151561669|gb|ABS15167.1| Methyltransferase type 12 [Ochrobactrum anthropi ATCC 49188]
          Length = 542

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE--KDQQF-FPILKD 88
           D  IL   A+      G  V+E+G   G  T  LL+ GA  V  IE  +D      + K+
Sbjct: 325 DPRILWLTAQLKDWFKGKDVLELGPLEGAHTATLLSEGAASVTAIEAKRDSYLRCLVTKE 384

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL-LFNWISADTWPPFW 147
           +   H    ++   + L     +      P+ + + + Y++   +     +S+ T   + 
Sbjct: 385 VLQLHGASFQL--GNFLPYLERE--ETQWPLIVASGVLYHMSDPIRTLELLSSRTDRLYL 440

Query: 148 ESLTLL 153
            +  + 
Sbjct: 441 WTHVVD 446


>gi|311746994|ref|ZP_07720779.1| ribosomal RNA adenine dimethylase phospholipid N-methyltransferase
           [Algoriphagus sp. PR1]
 gi|126578692|gb|EAZ82856.1| ribosomal RNA adenine dimethylase phospholipid N-methyltransferase
           [Algoriphagus sp. PR1]
          Length = 180

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 6/105 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDI 89
             +++ K+   S       V+E+G G G++T+ ++   A   K++V E  + F   ++  
Sbjct: 24  SKSLVNKMLSYSDLSQAKVVVELGGGDGSITKGIVDKLAPDAKLLVFEISESFCKAMEKK 83

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            SQ  + ++II D A   +  K+ +      I ++LP++     +
Sbjct: 84  FSQ--DNVQIINDSA--ENIHKYLDGEKVDYIFSSLPFSFIAPDI 124


>gi|296271360|ref|YP_003653992.1| type 11 methyltransferase [Thermobispora bispora DSM 43833]
 gi|296094147|gb|ADG90099.1| Methyltransferase type 11 [Thermobispora bispora DSM 43833]
          Length = 263

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDA 104
           L G  V+++GAG G  T+ LL  GAR V+ +++ ++   +L+   +     R  +   +A
Sbjct: 42  LKGALVLDVGAGTGIATRGLLDRGAR-VVALDRGERMLAVLRGRTALDLQCRAVLGDGNA 100

Query: 105 LKV 107
           L  
Sbjct: 101 LPF 103


>gi|290955652|ref|YP_003486834.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces scabiei
           87.22]
 gi|260645178|emb|CBG68264.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Streptomyces scabiei 87.22]
          Length = 437

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQH 93
           L+ I        G  +++IG G G+ T         +V  +   ++    +++       
Sbjct: 192 LELIRRKLSLAPGSRLLDIGCGWGSFTLYAAERHGVQVTAVTLAREQAAYVREQVRERGL 251

Query: 94  PNRLEIIQDD 103
             R++++  D
Sbjct: 252 GERVDVVCQD 261


>gi|157130331|ref|XP_001655665.1| hypothetical protein AaeL_AAEL011749 [Aedes aegypti]
 gi|108871917|gb|EAT36142.1| conserved hypothetical protein [Aedes aegypti]
          Length = 305

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQD 102
             L+   V+++G G G L+     LGA  V+ +E D     I K +I     + ++ IQ 
Sbjct: 142 DDLENKLVLDLGCGAGMLSVGAALLGAAHVVGVEIDADAIEIFKGNIEGFELDNVDCIQW 201

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           D L ++   F +    + +         + +   ++ 
Sbjct: 202 DVLGMEDIDFEHKFDTVLMNPPFGTKQNSGIDMKFLR 238


>gi|307317030|ref|ZP_07596471.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sinorhizobium meliloti AK83]
 gi|306897118|gb|EFN27863.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sinorhizobium meliloti AK83]
          Length = 219

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +L++ + L K+ + +       V+EIG G G     LL+L A  V+ +E D+        
Sbjct: 62  YLMEPSPLAKLLQLAEISKSDLVLEIGCGTGY-ASALLSLLAGSVVALESDEALAATATA 120

Query: 89  ISSQH-PNRLEIIQDDALK 106
             ++   + + ++  D  K
Sbjct: 121 TLARLGYDNVAVVSGDLTK 139


>gi|297160988|gb|ADI10700.1| Protein-L-isoaspartatecarboxylmethyltransferase- like protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 286

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
             ++ ++ E     DG  V+EIG G G  T +L    G   V  +E D          + 
Sbjct: 11  PGLVVRMLEELRVRDGNRVLEIGTGTGYSTALLCHRLGDDLVTSVEVD-HAVSGRASAAL 69

Query: 92  QHPNRL-EIIQDDAL 105
               RL  ++  D L
Sbjct: 70  GSCGRLPRLVVGDGL 84


>gi|15965266|ref|NP_385619.1| putative methyltransferase (PCM-like) transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|307309289|ref|ZP_07588957.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sinorhizobium meliloti BL225C]
 gi|15074446|emb|CAC46092.1| Methyltransferase [Sinorhizobium meliloti 1021]
 gi|306900290|gb|EFN30907.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sinorhizobium meliloti BL225C]
          Length = 219

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +L++ + L K+ + +       V+EIG G G     LL+L A  V+ +E D+        
Sbjct: 62  YLMEPSPLAKLLQLAEISKSDLVLEIGCGTGY-ASALLSLLAGSVVALESDEALAATATA 120

Query: 89  ISSQH-PNRLEIIQDDALK 106
             ++   + + ++  D  K
Sbjct: 121 TLTRLGYDNVAVVSGDLTK 139


>gi|149186210|ref|ZP_01864524.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21]
 gi|148830241|gb|EDL48678.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21]
          Length = 312

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            +L ++ E+     G  +I+   G G  T+ LL  GA  V   ++D     
Sbjct: 8  PVLLDEVVEALNPQPGDVLIDATFGAGGYTRALLERGA-TVHAFDRDPDAIA 58


>gi|126739587|ref|ZP_01755279.1| TPR domain protein [Roseobacter sp. SK209-2-6]
 gi|126719233|gb|EBA15943.1| TPR domain protein [Roseobacter sp. SK209-2-6]
          Length = 410

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 12/82 (14%)

Query: 28  NF------LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQ 80
           +F      L +    K I  ++       V++IG G G LT ML    GA+ V   E+  
Sbjct: 73  HFPMLADSLRNRAYAKAI--AATVTPDDVVLDIGCGAG-LTAMLAARAGAKHVYTCEQQP 129

Query: 81  QFFPILKDISSQH--PNRLEII 100
                 + + + +   +++ +I
Sbjct: 130 LIAQAARQVIADNGLSDKITVI 151


>gi|154250316|ref|YP_001411141.1| methyltransferase small [Fervidobacterium nodosum Rt17-B1]
 gi|154154252|gb|ABS61484.1| methyltransferase small [Fervidobacterium nodosum Rt17-B1]
          Length = 223

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKV 107
            VIE+G+G G +   L  L    V  IE   + + +  +    +   ++++ +  D    
Sbjct: 46  NVIELGSGTGIVAFALAKLYNLYVTGIEIQHELYELAIEGIHVNNLEDKVKFLHCDV--R 103

Query: 108 DFEKFFNISSPIRIIANLPYNIG 130
           D E +F   S   +++N P+++G
Sbjct: 104 DVENYFKAESFDMVVSNFPFHVG 126


>gi|30248068|ref|NP_840138.1| pcm; protein-L-isoaspartate o-methyltransferase [Nitrosomonas
           europaea ATCC 19718]
 gi|30179953|emb|CAD83948.1| possible pcm; protein-L-isoaspartate o-methyltransferase
           [Nitrosomonas europaea ATCC 19718]
          Length = 218

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-N 95
            +I +         ++E+G G G +T +L  LG   V  +E   +   +       H   
Sbjct: 68  ARILQELHIRKTDKILEVGTGTGYMTALLSKLGTH-VFSVEIVPELHTMAHINLQTHDIT 126

Query: 96  RLEIIQDDA 104
            + +   DA
Sbjct: 127 NVTLELGDA 135


>gi|315618188|gb|EFU98779.1| methyltransferase domain protein [Escherichia coli 3431]
          Length = 382

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 15/132 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A     +    V++I  G G  + +L+  GA++V+ ++  Q+     K +   +   +E 
Sbjct: 25  ANILHLVKDKVVLDIACGEGYGSALLMKAGAKRVVGVDISQESIEHAKKLFGGY--NVEF 82

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I  DA      + +       +++              I     P  + S      KE  
Sbjct: 83  IVSDA--CTISERYGEDFFDMVVS-----------IETIEHINTPEVFLSAIKKTAKENA 129

Query: 160 ERITAQKNSPHY 171
                  N   Y
Sbjct: 130 IFYITCPNDYWY 141


>gi|256391611|ref|YP_003113175.1| tRNA methyltransferase complex GCD14 subunit [Catenulispora
           acidiphila DSM 44928]
 gi|256357837|gb|ACU71334.1| tRNA methyltransferase complex GCD14 subunit [Catenulispora
           acidiphila DSM 44928]
          Length = 330

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
           +I + +    G  V+E G G G LT  LL     +  V   E+ ++F  I        
Sbjct: 105 QIVQMADIFPGARVVEAGVGSGALTCSLLRAVGDSGSVHSYERREEFAEIAAKNVRSF 162


>gi|297196954|ref|ZP_06914351.1| methyltransferase type 12 [Streptomyces sviceus ATCC 29083]
 gi|197715905|gb|EDY59939.1| methyltransferase type 12 [Streptomyces sviceus ATCC 29083]
          Length = 204

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 32  DLNILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           + N+ +   I  S     G   +++G G G L + L    A+ V  I+K        ++ 
Sbjct: 11  NTNVARHPGILRSVPEGCGDA-LDVGCGDGLLARKLAGR-AKHVTGIDKSPDMIACARES 68

Query: 90  SSQHPNRLEIIQDDALKVDFEK 111
           ++  P +L  ++ D L  +   
Sbjct: 69  AAGDP-QLTFVEGDFLTAELPA 89


>gi|171778927|ref|ZP_02919989.1| hypothetical protein STRINF_00850 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282573|gb|EDT47997.1| hypothetical protein STRINF_00850 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 318

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           V+EIG+G GNL Q LL   ++ +  + IE D     +   I+    ++ + IQ+DA++
Sbjct: 113 VLEIGSGTGNLAQTLLNNSSKDLNYLGIEVDDLLIDLSASIAEVMDSKAQFIQEDAVR 170


>gi|189230126|ref|NP_001121387.1| hypothetical protein LOC100158475 [Xenopus (Silurana) tropicalis]
 gi|156914693|gb|AAI52600.1| Zgc:110579 protein [Danio rerio]
 gi|183985584|gb|AAI66085.1| LOC100158475 protein [Xenopus (Silurana) tropicalis]
          Length = 564

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 16/145 (11%)

Query: 13  ILSHYKIIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           I   + + PKK      +G        ++K++ + +       V+++G+G G+LT+ L  
Sbjct: 127 IFRKH-VKPKKQHEIRRLG-------MLVKELCDQANCN---CVVDVGSGQGHLTRFLSF 175

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                V  IE D     +      Q    L      + K    +      P  ++  +  
Sbjct: 176 GLGLHVTGIEADPNLVSMATKFDRQLLQTLTKENQSSGKAHVLRSEPGPPPRHVVGWVNP 235

Query: 128 NIGTRLLFNWISADTWPPFWESLTL 152
                +    +       +    T 
Sbjct: 236 KASWDVFIQQLGMTATESYSIGATT 260


>gi|47225231|emb|CAG09731.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 492

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I      L    V+E+GAG G  T  LLT  A+ V  ++  + F    ++ +  H N + 
Sbjct: 41  ILSILPDLSQSNVLELGAGIGRYTSHLLT-KAKHVTAVDFMESFVEKNRENNGHHSN-VT 98

Query: 99  IIQDDALKVDFEK 111
            IQ D  K++  K
Sbjct: 99  FIQADVTKLEIPK 111


>gi|85716188|ref|ZP_01047163.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrobacter sp. Nb-311A]
 gi|85697021|gb|EAQ34904.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrobacter sp. Nb-311A]
          Length = 217

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 7/131 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  + E     D   V+EIG G G  T  +L+   RKV+ IE+ +      +    Q
Sbjct: 66  PFVVAYMTERLELRDDHRVLEIGTGSGYQT-AILSRLCRKVVTIERYRVLAYRARARLEQ 124

Query: 93  H-PNRLEIIQDDALKVDFEKFFNISSPIRIIA---NLPYNIGTRLLFNWISADTWPPFWE 148
              + +E++  D    +          I + A    +P  + TRL  + +      P   
Sbjct: 125 LGYDNVEVLLGDG--FNIPAGAGQFDRIMVTAAMERIPEALTTRLEPDGLLIAPVGPQNG 182

Query: 149 SLTLLFQKEVG 159
             TL+  +   
Sbjct: 183 RQTLILLRRAA 193


>gi|319744107|gb|EFV96481.1| adenine-specific methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 324

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            + + V+EIG+G GNL Q LL   ++++  + IE D     +   I+      ++ IQ+D
Sbjct: 108 QETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGCSVQFIQED 167

Query: 104 ALK 106
           A++
Sbjct: 168 AVR 170


>gi|323704814|ref|ZP_08116391.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535740|gb|EGB25514.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 279

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 3/104 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                  V++IG G G +   +      KV  ++       + +D + ++    +I+   
Sbjct: 106 RLQKNDVVLDIGTGSGAIAVSIAKYKDVKVYAVDISDDALSVARDNAYENGVLDKIV--- 162

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            LK D            +I + P  I +  +          P  
Sbjct: 163 FLKSDLFSSVPKDVKFDVIVSNPPYIRSGDIDKLQEEVKKEPKI 206


>gi|261403419|ref|YP_003247643.1| methylase [Methanocaldococcus vulcanius M7]
 gi|261370412|gb|ACX73161.1| methylase [Methanocaldococcus vulcanius M7]
          Length = 198

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 16/171 (9%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LK 87
           FL    +LK I +    ++   V+EIG G G ++      GA+KV+ ++ +     + L+
Sbjct: 24  FL----LLKNIVD----VENKEVLEIGVGTGIISIACAKRGAKKVVGVDINPFAVNLALE 75

Query: 88  DISSQHPNRLEIIQDDAL-----KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
           +    + N +  I+ D       + D   F     P      L  NI           + 
Sbjct: 76  NAKLNNVNNVSFIKSDLFENVRGEFDVILFNPPYLPTLDEDKLEGNIDYAFNGGKSGREV 135

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM--FDIS 191
              F E +    ++    +I     +     +S+L        ++    I 
Sbjct: 136 LNRFLEEVGDYLKEGGVVQILQSSLTGEEETISMLKQLGFDVKVVDRLKIP 186


>gi|206577582|ref|YP_002237081.1| putative methyltransferase [Klebsiella pneumoniae 342]
 gi|262828515|sp|B5XNG1|TRMN6_KLEP3 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|206566640|gb|ACI08416.1| putative methyltransferase [Klebsiella pneumoniae 342]
          Length = 245

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD--ISSQHPNRLE 98
           +       V++IGAG G L  ML        +V  +E D++     ++  ++S   +R+E
Sbjct: 40  APIAGVKHVLDIGAGSGLLALMLAQRTDHDVQVDAVELDEEAAAQARENALASPWSSRIE 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + Q D       +         II+N P+
Sbjct: 100 VCQADI---HQWQPSQTRRYELIISNPPF 125


>gi|163858002|ref|YP_001632300.1| putative methylase [Bordetella petrii DSM 12804]
 gi|163261730|emb|CAP44032.1| putative methylase [Bordetella petrii]
          Length = 376

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 36  LKKIAESSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +  +A +        +  +IG G G L  +L   G R+++  ++D +     ++  +   
Sbjct: 184 IDLVARAPLPGGQPALAYDIGTGTGVLAAVLARRGVRRIVATDQDPRALACARENLA--- 240

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            RL + +   +++     F       ++ N P+
Sbjct: 241 -RLGLHES--VELMQADLFPDGRADLVVCNPPW 270


>gi|197121242|ref|YP_002133193.1| methyltransferase small [Anaeromyxobacter sp. K]
 gi|196171091|gb|ACG72064.1| methyltransferase small [Anaeromyxobacter sp. K]
          Length = 382

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 11/90 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
           A +   LDG    ++G G G L  +L   GAR VI  + + +     ++ +++     ++
Sbjct: 197 AAAERPLDGQRAFDVGTGTGVLAMVLARAGAR-VIATDLEPRAVACARENAARLGLAGQV 255

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+++ D         F       ++ N P+
Sbjct: 256 EVVEAD--------LFPEGLADVVVCNPPW 277


>gi|147677287|ref|YP_001211502.1| precorrin-6B methylase 1,2 [Pelotomaculum thermopropionicum SI]
 gi|146273384|dbj|BAF59133.1| precorrin-6B methylase 1,2 [Pelotomaculum thermopropionicum SI]
          Length = 411

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH 93
           +    G+TV EIGAG G+ T  +  L    KV  +EKD     +++    + 
Sbjct: 244 ARLRKGMTVYEIGAGTGSWTVEVARLIAPGKVFAVEKDSAALALVRANLEKF 295


>gi|254822671|ref|ZP_05227672.1| hypothetical protein MintA_22269 [Mycobacterium intracellulare ATCC
           13950]
          Length = 189

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G   +EIG G G   + LL      +  +E D      L+     +  R  IIQ 
Sbjct: 35  GTRTVEIGPGYGATLRALLDR-TESLTAVELDSAMADRLQRR---YGERARIIQA 85


>gi|255084365|ref|XP_002508757.1| predicted protein [Micromonas sp. RCC299]
 gi|226524034|gb|ACO70015.1| predicted protein [Micromonas sp. RCC299]
          Length = 419

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + + I+     + G +V+EIGAG G  +      GA  V + + D      L   ++ + 
Sbjct: 160 LARWISRHPELVVGKSVLEIGAGLGAPSMAAARWGASMVALTDVDP-----LATRNAAYN 214

Query: 95  NRLEI 99
            R+ +
Sbjct: 215 ARMNL 219


>gi|195977274|ref|YP_002122518.1| adenine-specific methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195973979|gb|ACG61505.1| adenine-specific methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 317

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNR 96
           I E+  S + + V+EIG+G GNL Q +L    + +  + IE D     +   I+    + 
Sbjct: 101 ILETLSSQESLDVLEIGSGTGNLAQTILNHSHKSIDYLGIELDDLLIDLSASIAEIMGSS 160

Query: 97  LEIIQDDALK 106
            + IQ+DA++
Sbjct: 161 AQFIQEDAVR 170


>gi|182678699|ref|YP_001832845.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634582|gb|ACB95356.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 245

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL   IL ++ + +       V++I +G G  T  LL   A  V+ +E + ++    ++ 
Sbjct: 84  LLPPLILARLIQGAQVTPNDHVLDIASGSGYST-ALLAGLAHDVVALESEPEWAAFTRNA 142

Query: 90  SSQHPNR-LEIIQD 102
            + H  + + +++ 
Sbjct: 143 IAAHGLQTVSVVEG 156


>gi|40063041|gb|AAR37897.1| methyltransferase, putative [uncultured marine bacterium 560]
          Length = 190

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
           AG G L+   ++ GA++V VIEKD++ +  LK        ++  II +DA+
Sbjct: 54  AGSGALSLEAMSRGAKEVYVIEKDRKVYEKLKSNFKLLDKSQYTIINEDAM 104


>gi|13476700|ref|NP_108269.1| cyclopropane-fatty-acyl-phospholipid synthase [Mesorhizobium loti
           MAFF303099]
 gi|14027461|dbj|BAB53730.1| cyclopropane-fatty-acyl-phospholipid synthase [Mesorhizobium loti
           MAFF303099]
          Length = 292

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRL 97
            E +G  DG +++E+G G G+LT  +      AR V +     Q   I  + +++    +
Sbjct: 59  VEHAGLGDGQSILELGCGWGSLTLYMAKRFPAARIVAMSNSTPQRLHIEAEAAARGLRNV 118

Query: 98  EIIQDDALKVDFEKFFN 114
           E+I  D    +  + F+
Sbjct: 119 EVITADMNGFEPRERFD 135


>gi|88705537|ref|ZP_01103247.1| 3-demethylubiquinone-9 3-methyltransferase [Congregibacter
           litoralis KT71]
 gi|88700050|gb|EAQ97159.1| 3-demethylubiquinone-9 3-methyltransferase [Congregibacter
           litoralis KT71]
          Length = 239

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             L G+TV++IG G G L++ +   GA  V  ++  Q+   I  + ++     +E I  D
Sbjct: 54  APLKGLTVLDIGCGAGLLSEAMARAGA-VVTAVDPAQRNIAIAMEHAAAEDLAIEYIHGD 112

Query: 104 ALKVDFEKF 112
              V   +F
Sbjct: 113 IDSVAHRQF 121


>gi|291446826|ref|ZP_06586216.1| L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291349773|gb|EFE76677.1| L-isoaspartate(D-aspartate) O-methyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 367

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++       DG+ V+E+G G G +  +L    G   V  +E D        +  +
Sbjct: 93  PSMVARMLGLLDVQDGVRVLEVGTGTGYVAALLCERLGDDLVHSVELDPVVARQAAEALA 152

Query: 92  QHPNRLEIIQDD 103
           Q   R  +   D
Sbjct: 153 QAGYRPHLRIGD 164


>gi|262380905|ref|ZP_06074055.1| methyltransferase-endonuclease [Acinetobacter radioresistens SH164]
 gi|262297468|gb|EEY85387.1| methyltransferase-endonuclease [Acinetobacter radioresistens SH164]
          Length = 476

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 18  KIIPKKY--MGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLT--LGARK 72
           K+ PKK   +GQ F+    I + +A           +++ GAG G+LT          + 
Sbjct: 16  KLNPKKKSELGQ-FMTPSVIAEYMASLFDDHKKEIKLLDCGAGIGSLTISAAKKLKNIKL 74

Query: 73  VIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           V + E D      L+           I   D 
Sbjct: 75  VDLWEIDPIMREQLEVNMHAIDINFSIYAQDF 106


>gi|239989811|ref|ZP_04710475.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
          Length = 361

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++       DG+ V+E+G G G +  +L    G   V  +E D        +  +
Sbjct: 87  PSMVARMLGLLDVQDGVRVLEVGTGTGYVAALLCERLGDDLVHSVELDPVVARQAAEALA 146

Query: 92  QHPNRLEIIQDD 103
           Q   R  +   D
Sbjct: 147 QAGYRPHLRIGD 158


>gi|239943355|ref|ZP_04695292.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 338

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++       DG+ V+E+G G G +  +L    G   V  +E D        +  +
Sbjct: 64  PSMVARMLGLLDVQDGVRVLEVGTGTGYVAALLCERLGDDLVHSVELDPVVARQAAEALA 123

Query: 92  QHPNRLEIIQDD 103
           Q   R  +   D
Sbjct: 124 QAGYRPHLRIGD 135


>gi|57168149|ref|ZP_00367288.1| phospholipid N-methyltransferase, putative [Campylobacter coli
          RM2228]
 gi|57020523|gb|EAL57192.1| phospholipid N-methyltransferase, putative [Campylobacter coli
          RM2228]
          Length = 159

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI 89
                  ++EIG G G  T+ +L    +K     IE ++     LK  
Sbjct: 5  INLRQANYIVEIGPGTGVFTENILKYKNKKAQFFAIEINKNMADKLKRK 53


>gi|240102588|ref|YP_002958897.1| SAM-dependent rRNA adenine methyltransferase, putative
           [Thermococcus gammatolerans EJ3]
 gi|239910142|gb|ACS33033.1| SAM-dependent rRNA adenine methyltransferase, putative
           [Thermococcus gammatolerans EJ3]
          Length = 206

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A S+G +    V ++G G G L      LGA KV  +E D +   + K  + +    +E 
Sbjct: 40  AHSAGDIVEKVVADLGTGTGVLAIGAKLLGAEKVYAVEVDPKALEVAKRNAERSGVEVEF 99

Query: 100 IQDDALKV 107
           IQ D  + 
Sbjct: 100 IQADVSEF 107


>gi|271962913|ref|YP_003337109.1| ubiquinone/menaquinone biosynthesis methylase-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270506088|gb|ACZ84366.1| Methylase involved in ubiquinone/menaquinone biosynthesis-like
           protein [Streptosporangium roseum DSM 43021]
          Length = 279

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 14/85 (16%)

Query: 28  NFL-LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           +FL  D ++L           G+TV +IG   G +   L   GAR+   ++ D    P L
Sbjct: 37  HFLGRDRDVLD----------GLTVADIGCSAGFIADELAAAGARRTFGVDID---VPGL 83

Query: 87  KDISSQHPNRLEIIQDDALKVDFEK 111
           +  + +   R+E +  D   + F  
Sbjct: 84  RKAAERFGERVEFVCADGTALPFPD 108


>gi|198476828|ref|XP_001357498.2| GA25472 [Drosophila pseudoobscura pseudoobscura]
 gi|198137868|gb|EAL34568.2| GA25472 [Drosophila pseudoobscura pseudoobscura]
          Length = 239

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             ++  L G  ++E+G G G LT+ L  LGA +V  I+  ++     +D  ++    L
Sbjct: 79  VNTTKVLKGQRLLEVGCGGGLLTEQLARLGA-QVTGIDLAEKLIAAARDHLTELSPEL 135


>gi|18977100|ref|NP_578457.1| hypothetical protein PF0728 [Pyrococcus furiosus DSM 3638]
 gi|18892743|gb|AAL80852.1| hypothetical protein PF0728 [Pyrococcus furiosus DSM 3638]
          Length = 213

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          +S    G  V+++G G G LT      GAR V  I+ + Q   I +    +
Sbjct: 31 TSRIKPGQRVLDVGCGTGALTLRAALRGAR-VKAIDINPQMLEIARKRVEE 80


>gi|87309429|ref|ZP_01091564.1| Putative RNA methylase [Blastopirellula marina DSM 3645]
 gi|87287737|gb|EAQ79636.1| Putative RNA methylase [Blastopirellula marina DSM 3645]
          Length = 308

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 18/113 (15%)

Query: 25  MGQ------NF--LLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           +GQ      +F  L D   ++   E+       G  V+++G G G L+      GA +V 
Sbjct: 19  LGQFIPLHYHFEMLRDRYRMQSFREAIEATVRPGDKVVDLGGGTGVLSFFAARAGA-EVW 77

Query: 75  VIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
             E++ +     + I   +    ++ I+Q DA      +F   +    +I  +
Sbjct: 78  YCERNPELVDAAQRILRDNHVSQQVHIVQADA-----AEFAPPTPVDFVICEM 125


>gi|115524741|ref|YP_781652.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris BisA53]
 gi|115518688|gb|ABJ06672.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris BisA53]
          Length = 408

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHP 94
           +++AE+     G  ++EIG G G   + + T    +V+ +   ++           +   
Sbjct: 181 RRLAEAIDLKPGQRLLEIGCGWGGFAEYVATNYDARVVGLTISREQHDFAAKRMQDAGLA 240

Query: 95  NRLEIIQDD 103
           +R+EI   D
Sbjct: 241 DRVEIRLQD 249


>gi|158311924|ref|YP_001504432.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. EAN1pec]
 gi|158107329|gb|ABW09526.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. EAN1pec]
          Length = 433

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIG-AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             I  ++ E +G   G++V+EIG +G        +   + +V+ ++ D +     + +  
Sbjct: 100 PFIQARMIEQAGLGPGMSVVEIGSSGYNAALLAEIVGPSGRVVSVDIDPEVTDRARALLE 159

Query: 92  Q--HPNRLEIIQDDA 104
              + +R+ +++ DA
Sbjct: 160 ATGYADRVTVVRADA 174


>gi|325120129|emb|CBZ55683.1| hypothetical protein NCLIV_061070 [Neospora caninum Liverpool]
          Length = 393

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--P 94
           + I +++       V+++G+G G L+      GA+ V  IE   +   I + I  ++   
Sbjct: 98  RAICQNAHLFANKVVLDVGSGTGILSLFAARAGAKHVYGIEC-SEIVNIARKIVKENHME 156

Query: 95  NRLEIIQDDA 104
           +R+  +Q  A
Sbjct: 157 DRITFVQGKA 166


>gi|237745985|ref|ZP_04576465.1| methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229377336|gb|EEO27427.1| methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 221

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A+S G   G ++++IG G G  T+ L      +V  ++ + ++    +   +        
Sbjct: 27  ADSLGPEKGDSILDIGCGTGRFTRRLANGTGAQVTGVDVNAEWLAYARSRDAFS----RY 82

Query: 100 IQDDALKVDFEK 111
           +  DA+ + FE 
Sbjct: 83  LLADAMALPFED 94


>gi|237807744|ref|YP_002892184.1| methyltransferase small [Tolumonas auensis DSM 9187]
 gi|237500005|gb|ACQ92598.1| methyltransferase small [Tolumonas auensis DSM 9187]
          Length = 265

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP--NRLEIIQDDAL 105
            +++IG G G L  ML    A++V    +E D+      ++  +  P   R+ +I+ D  
Sbjct: 68  RILDIGTGTGILALMLAQRTAQQVQIDAVELDKDAVKQAEENINASPWRERIRVIRHDIR 127

Query: 106 KVDFEKFFNISSPIRIIANLPYNI 129
                 +        II+N PY +
Sbjct: 128 TFQAPHY------DLIISNPPYFV 145


>gi|195327091|ref|XP_002030255.1| GM24668 [Drosophila sechellia]
 gi|194119198|gb|EDW41241.1| GM24668 [Drosophila sechellia]
          Length = 367

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 19/107 (17%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDL--NILKK--------IAESSGSLDGITVIEIGAGPGN 60
           ++     +I+  K +G   LLD   NI +         +     + +G  +  +G G G 
Sbjct: 149 RSPFQKIQIMHSKSLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICILGGGDGA 208

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
           L   LL    + V+++E D        ++  Q  N+ L +I  D L+
Sbjct: 209 LLYELLKENPKHVVMLEID--------ELVMQTCNKYLNVICGDVLE 247


>gi|182439673|ref|YP_001827392.1| putative cyclopropane fatty acid synthase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178468189|dbj|BAG22709.1| putative cyclopropane fatty acid synthase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 450

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L+ I    G   G  +++IG G G+LT         +V  +    +    +++  +    
Sbjct: 197 LELICRKLGLRPGARLLDIGCGWGSLTLYAAERHGVRVTAVTLAAEQAAYVREQVAARGL 256

Query: 94  PNRLEIIQDD 103
              +E+   D
Sbjct: 257 GELVEVRHID 266


>gi|148244456|ref|YP_001219150.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326283|dbj|BAF61426.1| RNA methyltransferase, TrmA family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 439

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           NF L+  ++    E     +   VI++  G GN T  +    A+ V+ IE D       K
Sbjct: 273 NFKLNQQMVSLAVELLELNESDKVIDLFCGLGNFTLPIA-RYAKYVVGIEGDLGLVERAK 331

Query: 88  DISSQHP-NRLEIIQDDALK 106
             + ++  N ++  + D  K
Sbjct: 332 YNAEKNSINNVDFYRSDLCK 351


>gi|146284237|ref|YP_001174390.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145572442|gb|ABP81548.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
          Length = 333

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 20/163 (12%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEI 99
           ++     G T +E+G G G+    L    AR V+ ++       + +    Q   + +E+
Sbjct: 159 DALNFAAGATALEVGPGDGSFLPELAGRFAR-VVALDNSPAMLDLARARCEQEGLDNVEL 217

Query: 100 IQDDALKVDFEK------------FFNISSPIRIIANLPYNIGTRLLFNWISA------D 141
              DAL  D                      ++ +A L    G+ L+    S       +
Sbjct: 218 KLADALHDDCRPADCVVLNMVLHHLAAPGEAMKQLARLVNAGGSLLVTELCSHNQSWARE 277

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
                W            +          Y  L      + + 
Sbjct: 278 ACGDLWLGFEQDDLARWADAAGLTPGESLYIGLKNGFQIQARC 320


>gi|94993496|ref|YP_601594.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|94547004|gb|ABF37050.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 332

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLE 98
           E     D + V+EIG+G GNL Q LL   ++ +  + IE D     +   I+    +   
Sbjct: 118 EQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSSAH 177

Query: 99  IIQDDALK 106
            IQ+DA++
Sbjct: 178 FIQEDAVR 185


>gi|71902757|ref|YP_279560.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|94989604|ref|YP_597704.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|71801852|gb|AAX71205.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|94543112|gb|ABF33160.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 332

 Score = 40.6 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLE 98
           E     D + V+EIG+G GNL Q LL   ++ +  + IE D     +   I+    +   
Sbjct: 118 EQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSSAH 177

Query: 99  IIQDDALK 106
            IQ+DA++
Sbjct: 178 FIQEDAVR 185


>gi|326333188|ref|ZP_08199435.1| UbiE/COQ5 methyltransferase [Nocardioidaceae bacterium Broad-1]
 gi|325948832|gb|EGD40925.1| UbiE/COQ5 methyltransferase [Nocardioidaceae bacterium Broad-1]
          Length = 231

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV-IEKDQQFFPILKDISSQHPN 95
           ++  E +G   G TV+++G G GNL+  +L      V+   + D     +    + +   
Sbjct: 46  ERTVELAGIRAGQTVLDVGCGTGNLSFAVLRAVPGAVVTGHDPDASALRLAARKAGRRGV 105

Query: 96  RLEIIQDDALKVDFEK 111
           RL ++Q  A ++  E 
Sbjct: 106 RLSLVQGYADRLLPED 121


>gi|296273266|ref|YP_003655897.1| HemK family modification methylase [Arcobacter nitrofigilis DSM
           7299]
 gi|296097440|gb|ADG93390.1| modification methylase, HemK family [Arcobacter nitrofigilis DSM
           7299]
          Length = 274

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 27  QNFLLDLN-----ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQ 80
           QN L+        +++K  E    ++   V+EIG G G ++ ML  L  + KV  ++ + 
Sbjct: 85  QNVLI-PRPETEILVEKAFEKLKQIENPKVVEIGTGSGIISVMLSKLLPQLKVTAVDIND 143

Query: 81  QFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
               + K+ + +H   N++  I+ D LK     F         I+N PY
Sbjct: 144 DALELAKENAKKHSVENQISFIKSDLLKEVSGDF------DMCISNPPY 186


>gi|229542477|ref|ZP_04431537.1| modification methylase, HemK family [Bacillus coagulans 36D1]
 gi|229326897|gb|EEN92572.1| modification methylase, HemK family [Bacillus coagulans 36D1]
          Length = 287

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQFFPILKDISS 91
              + +I    G   G+ + +IG G G + T + L L    V   +  ++   + +  + 
Sbjct: 104 QGAIGRIRRHFGETKGLKLADIGTGSGIIATTIKLELPELLVYASDISEKALAVAEKNAE 163

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                +  +  D L+     F +      +++N PY
Sbjct: 164 ALHADIRFVHGDLLQ----PFIHGEKLDIVLSNPPY 195


>gi|189424829|ref|YP_001952006.1| methyltransferase [Geobacter lovleyi SZ]
 gi|189421088|gb|ACD95486.1| methyltransferase [Geobacter lovleyi SZ]
          Length = 189

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLE 98
           +S+G LDG+ V+++ AG G+L    L+ GA +V  IEKD+     L+         +R E
Sbjct: 37  DSAGRLDGMRVLDLFAGSGSLGIEALSRGAEQVTFIEKDRHALESLRLNLGHTGFSDRAE 96

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++  D L+              I+ + PY  G
Sbjct: 97  VLPFDCLQALERLVRQKVCFDLILLDPPYQAG 128


>gi|315638368|ref|ZP_07893547.1| methyltransferase domain protein [Campylobacter upsaliensis JV21]
 gi|315481579|gb|EFU72204.1| methyltransferase domain protein [Campylobacter upsaliensis JV21]
          Length = 150

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
          FLL   ++K I +++  L+ + V+E+GAG G LT+ML  +    V  +E
Sbjct: 22 FLL-EKLIKCINDTNKPLEDLNVVEVGAGTGKLTKMLAEIFKLNVTAVE 69


>gi|297155859|gb|ADI05571.1| precorrin-6Y C5,15-methyltransferase [Streptomyces bingchenggensis
           BCW-1]
          Length = 417

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
            G   G  V +IG G G         GA  VI +++D+        ++ +   +L+++  
Sbjct: 266 LGPRVGDLVWDIGVGSGAAAVETAGFGA-AVIAVDRDRDACERAAALARRFGVQLQVVHG 324

Query: 103 DA 104
            A
Sbjct: 325 TA 326


>gi|331696189|ref|YP_004332428.1| methylase [Pseudonocardia dioxanivorans CB1190]
 gi|326950878|gb|AEA24575.1| methylase [Pseudonocardia dioxanivorans CB1190]
          Length = 215

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
             +    G  V+++G G G L       GA+ V  ++  ++     +     H   + + 
Sbjct: 22  RVAQLAHGRHVLDLGTGTGALALTGARAGAQSVTAVDLSRRCVATTRLNFLLHRRPVRVH 81

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
           + D  +    + F +     I+AN PY
Sbjct: 82  RGDLYEPVRGRRFGL-----IVANPPY 103


>gi|238027812|ref|YP_002912043.1| putative phospholipid N-methyltransferase [Burkholderia glumae
           BGR1]
 gi|237877006|gb|ACR29339.1| Putative phospholipid N-methyltransferase [Burkholderia glumae
           BGR1]
          Length = 192

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                V+E+GAG G  T+ LL  G   R +I+++  ++F  +L            I+  D
Sbjct: 44  RRDGPVLELGAGTGVFTKALLRRGLAQRDLILVDSSERFAALLAGRFPDA----RIVVGD 99

Query: 104 ALKVDFEKFFNISSPIRIIANLP 126
           A  +         S   +++ LP
Sbjct: 100 AANLLPLGVALPRSVGAVVSGLP 122


>gi|118444755|ref|YP_878564.1| ribosomal protein L11 methyltransferase [Clostridium novyi NT]
 gi|166223410|sp|A0Q1R2|PRMA_CLONN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|118135211|gb|ABK62255.1| ribosomal protein L11 methyltransferase [Clostridium novyi NT]
          Length = 312

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 35  ILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS- 91
             +   ++      +   V +IG G G L+     L A+ V+ ++ D       K+    
Sbjct: 163 TTRLCVKALEEYVNEDSVVFDIGTGSGILSIAAAKLNAKHVVGVDLDPVAVDAAKENVEL 222

Query: 92  QHPNRLEIIQDDALKV 107
            + + +EI+  + ++V
Sbjct: 223 NNLDNIEILYGNLMEV 238


>gi|326780337|ref|ZP_08239602.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660670|gb|EGE45516.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces cf.
           griseus XylebKG-1]
          Length = 450

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L+ I    G   G  +++IG G G+LT         +V  +    +    +++  +    
Sbjct: 197 LELICRKLGLRPGARLLDIGCGWGSLTLYAAERHGVRVTAVTLAAEQAAYVREQVAARGL 256

Query: 94  PNRLEIIQDD 103
              +E+   D
Sbjct: 257 GELVEVRHID 266


>gi|258510757|ref|YP_003184191.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477483|gb|ACV57802.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 189

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
             ++ ++        VI+IGAGPG     L      KV  ++   +   +L + + +   
Sbjct: 24  ADRVLDALDVQTHHDVIDIGAGPGYFALPLARRTRGKVHAVDLSPEMLQMLSERAREAGV 83

Query: 96  RLEIIQDDA 104
            +E  Q  A
Sbjct: 84  SIEAHQASA 92


>gi|15668304|ref|NP_247100.1| L-isoaspartyl protein carboxyl methyltransferase PimT
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2495821|sp|Q57598|TRMI_METJA RecName: Full=tRNA (adenine-N(1)-)-methyltransferase TrmI; AltName:
           Full=tRNA(m1A57/58)-methyltransferase
 gi|1590899|gb|AAB98115.1| L-isoaspartyl protein carboxyl methyltransferase isolog (pimT)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 282

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD 88
           I   +G  +G TV+E G G G LT  L     +  KVI  +   +F  + + 
Sbjct: 79  IIARAGIREGETVVEAGTGSGALTMYLSNAVGKTGKVITYDIRPEFAKVARK 130


>gi|321311381|ref|YP_004203668.1| hypothetical protein BSn5_00025 [Bacillus subtilis BSn5]
 gi|320017655|gb|ADV92641.1| hypothetical protein BSn5_00025 [Bacillus subtilis BSn5]
          Length = 457

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 19/127 (14%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +    +  +++ IG G G     LL   +  +  IEKD     +L+ I+S +    ++I 
Sbjct: 254 ALVPAEADSILHIGCGTGAAGTELLNRQSCLLYGIEKD----ELLQTIASPYYE--QVIS 307

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D       +  ++  P      +       L+ + ++    P        ++ K  G  
Sbjct: 308 ADV------ETCDLPYPESFFDVI-------LIGDLLNCSKNPRHTIETLAVYLKPSGSL 354

Query: 162 ITAQKNS 168
           I +  N+
Sbjct: 355 ICSIPNT 361


>gi|319652536|ref|ZP_08006651.1| hypothetical protein HMPREF1013_03265 [Bacillus sp. 2_A_57_CT2]
 gi|317395790|gb|EFV76513.1| hypothetical protein HMPREF1013_03265 [Bacillus sp. 2_A_57_CT2]
          Length = 249

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           + K+ E     D   VI+IGAG G +   ++     K I IEK   F   L+  + +   
Sbjct: 25  IDKVIELLDLKDNDKVIDIGAGKGEILFRIIERYRAKCIAIEKYIGFTEQLQVNAEKRGV 84

Query: 95  -NRLEIIQDD---ALKVDFEKF 112
            N +EII  D   A+K   E F
Sbjct: 85  LNNIEIITKDAKAAMKTINEPF 106


>gi|300783710|ref|YP_003764001.1| methyltransferase [Amycolatopsis mediterranei U32]
 gi|299793224|gb|ADJ43599.1| methyltransferase [Amycolatopsis mediterranei U32]
          Length = 182

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           ++G LDG  V+++ AG G L    L+ GA   + +E D++   +L+   +       +  
Sbjct: 34  TAGELDGARVLDLYAGSGALGLEALSRGAADALFVESDRRAVEVLRGNVAALGLGGTVRA 93

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
                         +S   ++A+ PY +    L + ++A     +  S  L+  +     
Sbjct: 94  GQV--EAVVAAPAPASFDLVLADPPYAVDAAALGSVLAALAAGGWLGSSALVVIERAARD 151

Query: 162 -------ITAQKNSPHYGRLSVLTGWRTKA 184
                     Q  +  YG  +V     T  
Sbjct: 152 GEPDWPPGFEQARAKKYGDTAVFWAEYTAV 181


>gi|238059976|ref|ZP_04604685.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Micromonospora sp. ATCC 39149]
 gi|237881787|gb|EEP70615.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Micromonospora sp. ATCC 39149]
          Length = 208

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 49  ITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
             V+E+G G G  T+++     G    + +E D  F  +L+         ++++   A  
Sbjct: 37  PVVVELGPGTGAFTELIQRRLGGRGCHLALEVDPVFTALLRRRFPM----VDVVAAAAED 92

Query: 107 V-DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           + D    + +     +++ LP+ +    L +
Sbjct: 93  LPDVLAAYGLPPADVVVSGLPWTVLPAALVD 123


>gi|15674331|ref|NP_268505.1| hypothetical protein SPy_0108 [Streptococcus pyogenes M1 GAS]
 gi|71909907|ref|YP_281457.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|13621415|gb|AAK33226.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|71852689|gb|AAZ50712.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS5005]
          Length = 317

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLE 98
           E     D + V+EIG+G GNL Q LL   ++ +  + IE D     +   I+    +   
Sbjct: 103 EQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSSAH 162

Query: 99  IIQDDALK 106
            IQ+DA++
Sbjct: 163 FIQEDAVR 170


>gi|148265355|ref|YP_001232061.1| protein-L-isoaspartate O-methyltransferase [Geobacter
           uraniireducens Rf4]
 gi|209573146|sp|A5G6S0|PIMT3_GEOUR RecName: Full=Protein-L-isoaspartate O-methyltransferase 3;
           AltName: Full=L-isoaspartyl protein carboxyl
           methyltransferase 3; AltName: Full=Protein L-isoaspartyl
           methyltransferase 3; AltName:
           Full=Protein-beta-aspartate methyltransferase 3;
           Short=PIMT 3
 gi|146398855|gb|ABQ27488.1| protein-L-isoaspartate O-methyltransferase [Geobacter
           uraniireducens Rf4]
          Length = 236

 Score = 40.6 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 6/124 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  + E+     G  V+EIG G G    +L  +  + V  IE  +           +
Sbjct: 85  PYVVALMTEALRLKPGDRVLEIGTGSGYQAAVLAEM-VKDVYSIEIRKDLAETADKRLKE 143

Query: 93  H-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
                + +   D     +  +   +    +I     N     L   +            T
Sbjct: 144 LGYKNVAVKYGDG----YLGWPEYAPFDAVIITASVNHIPPPLLKQLKEGGRLILPLGST 199

Query: 152 LLFQ 155
           L +Q
Sbjct: 200 LFYQ 203


>gi|311106597|ref|YP_003979450.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310761286|gb|ADP16735.1| protein-L-isoaspartate O-methyltransferase 2 [Achromobacter
           xylosoxidans A8]
          Length = 274

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQ 92
           + + IA +        V+E+GAG G     +L    R+V  IE+ +  + + ++   + +
Sbjct: 127 VARMIAAACDDRTPTRVLEVGAGCGY-QAAVLAQFVREVHTIERIRGLYELAREHLRALR 185

Query: 93  HPNRLEIIQDDAL 105
              R+ +I  D +
Sbjct: 186 LTTRIRLIYGDGM 198


>gi|269795392|ref|YP_003314847.1| tRNA (adenine-58-N(1)-) methyltransferase [Sanguibacter keddieii
           DSM 10542]
 gi|269097577|gb|ACZ22013.1| tRNA (adenine-58-N(1)-) methyltransferase [Sanguibacter keddieii
           DSM 10542]
          Length = 349

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILK 87
           +I   +    G  VIE G G G LT  LL        +  IE+ + F  I +
Sbjct: 101 QIVAMADIFPGARVIEAGVGSGALTLSLLRAVGDGGSLHSIERREDFADIAR 152


>gi|237747529|ref|ZP_04578009.1| L-isoaspartate O-methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229378891|gb|EEO28982.1| L-isoaspartate O-methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 217

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 10/125 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQD 102
           G     TV+EIG G G +   LL+  +R V  +E ++      +D   ++  + +++I D
Sbjct: 72  GLRKDDTVLEIGTGSGYM-AALLSHQSRHVTTVEIEEGLKQQAQDNLDRYGIKNVQVIHD 130

Query: 103 D-AL--KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           +  L  +   ++ F++      ++N+P     +     ++ +     +       Q    
Sbjct: 131 NGFLIERYARDRLFDVIVFSGSVSNIPETFKDK-----LADNGRMIVFYGTEPCVQAIFL 185

Query: 160 ERITA 164
           ++ +A
Sbjct: 186 QKNSA 190


>gi|289582403|ref|YP_003480869.1| methyltransferase small [Natrialba magadii ATCC 43099]
 gi|289531956|gb|ADD06307.1| methyltransferase small [Natrialba magadii ATCC 43099]
          Length = 309

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           I   +G   G  V++ G G G L+  +   GA  V+  E+D +F  + ++        + 
Sbjct: 141 IIGETGIARGDRVLDTGTGTGVLSASMARAGA-TVVTYERDPEFADVARENMELGGVADA 199

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIA 123
           +++   D L  + E     S+P  ++ 
Sbjct: 200 VDVRTGD-LTEELEAGALESAPFDVLT 225


>gi|153938216|ref|YP_001390292.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum F str. Langeland]
 gi|152934112|gb|ABS39610.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum F str. Langeland]
 gi|295318384|gb|ADF98761.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum F str. 230613]
          Length = 192

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS 90
           D+ IL          +   V+++GAG G+++    T+  + +V+ IEKD++   I+K   
Sbjct: 20  DIRILS--ISKMNLEENSKVLDVGAGTGSVSIQAATVCKKGRVLAIEKDEEALDIIKKNK 77

Query: 91  SQHP-NRLEIIQDDALKVDFE 110
            +     L+II+ +AL+V+  
Sbjct: 78  EKFNCENLKIIKGEALEVEES 98


>gi|153009574|ref|YP_001370789.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151561462|gb|ABS14960.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 222

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            +L      P+      +L++ +   K+ + +   +   V+++G G G  +  +L+  A 
Sbjct: 54  QLLESEGKQPR------YLMEPSPFAKLVQLARIKNTDVVLDVGCGTGY-SAAILSKLAG 106

Query: 72  KVIVIEKDQQF-FPILKDISSQHPNRLEIIQD 102
            VI +E D          ++    + + I+  
Sbjct: 107 SVIGLESDSVLSAAATARLAEFGYDNVVIVSG 138


>gi|94987725|ref|YP_595826.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94991593|ref|YP_599692.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94541233|gb|ABF31282.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94545101|gb|ABF35148.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 332

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLE 98
           E     D + V+EIG+G GNL Q LL   ++ +  + IE D     +   I+    +   
Sbjct: 118 EQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSSAH 177

Query: 99  IIQDDALK 106
            IQ+DA++
Sbjct: 178 FIQEDAVR 185


>gi|29827303|ref|NP_821937.1| methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29604402|dbj|BAC68472.1| putative methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 275

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQF-----FPILKDISSQ-- 92
            + G   G   +++GAG G +++ LL   G   V+ +++D +F      P L  + S   
Sbjct: 47  RALGVGPGWRCLDVGAGTGTVSRRLLAEAGVASVLAVDRDVRFLSARPVPGLDVLESDIT 106

Query: 93  ----HPNRLEIIQD 102
                P R  ++  
Sbjct: 107 APDFAPGRFRLVHA 120


>gi|322370101|ref|ZP_08044663.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
 gi|320550437|gb|EFW92089.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
          Length = 226

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDIS-SQHP 94
           ++ +      G TV+E+G G G     L      +  VI  D  +      +D    +  
Sbjct: 36  RVVDELRLSPGDTVVEMGCGTGANFPHLRRRVGPEGRVIGVDFTRGMLEQARDRIDREGW 95

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANL--PYNIGTRLL 134
             + I+Q DA      +  +      +I  L  PY+  +R L
Sbjct: 96  ENVHIVQADAATFSLREDVDAVLATFVIGMLDDPYSTVSRWL 137


>gi|315453508|ref|YP_004073778.1| methyltransferase small protein [Helicobacter felis ATCC 49179]
 gi|315132560|emb|CBY83188.1| Methyltransferase small protein [Helicobacter felis ATCC 49179]
          Length = 236

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 ++++GAG G +  +     A  + +IE D       +  S+  P+   +I  D 
Sbjct: 30  IKKRAKLLDVGAGCGVVGLLCAREFANPLDLIEIDPNLAFFAQKNSAHAPHA-RVICADF 88

Query: 105 LKVDFEKFFNISSPIRIIANLPYN 128
           L        N+ +   II+N PY 
Sbjct: 89  LH------ANLDTYHCIISNPPYY 106


>gi|306828212|ref|ZP_07461473.1| adenine-specific methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304429590|gb|EFM32638.1| adenine-specific methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 332

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLE 98
           E     D + V+EIG+G GNL Q LL   ++ +  + IE D     +   I+    +   
Sbjct: 118 EQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSSAH 177

Query: 99  IIQDDALK 106
            IQ+DA++
Sbjct: 178 FIQEDAVR 185


>gi|297157299|gb|ADI07011.1| protein-L-isoaspartate-O-methyltransferase [Streptomyces
           bingchenggensis BCW-1]
          Length = 379

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            N +  +  ++    G+ V+EIG G G    +L    G   V+ +E D            
Sbjct: 101 PNAVFTMLAAADVRPGMKVLEIGTGTGYNAALLCERAGEANVVSVEVDAGLAEGAVRRLG 160

Query: 92  QHPNRLEIIQDD 103
           +      ++  D
Sbjct: 161 EAGYLPWVVAGD 172


>gi|294678631|ref|YP_003579246.1| protein-L-isoaspartate O-methyltransferase [Rhodobacter capsulatus
           SB 1003]
 gi|294477451|gb|ADE86839.1| protein-L-isoaspartate O-methyltransferase-2 [Rhodobacter
           capsulatus SB 1003]
          Length = 216

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 25  MGQ-NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           +GQ  +LL+     K+ ++     G  V++IGAG G  + +L  + A+ V+ +E+     
Sbjct: 55  LGQGRWLLEPRNFAKMLDALDIQPGDLVLDIGAGMGYSSAVLARM-AKAVVALEEGTLAA 113

Query: 84  PILKDISSQHPNRLEIIQD 102
                +S Q    + +++ 
Sbjct: 114 SAEAHLSVQDIEGVTVVEG 132


>gi|302383891|ref|YP_003819714.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194519|gb|ADL02091.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC
           15264]
          Length = 317

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ E+     G  +I+   G G  T+ +L  GA  VI +++D    P    +++ 
Sbjct: 8   PVLLAEVLEALAPKAGDVIIDATFGAGGYTRAILATGA-TVIALDRDPTVQPHADAVAND 66

Query: 93  HPNRLEII 100
           HP R  ++
Sbjct: 67  HPGRFTLV 74


>gi|261402784|ref|YP_003247008.1| methyltransferase small [Methanocaldococcus vulcanius M7]
 gi|261369777|gb|ACX72526.1| methyltransferase small [Methanocaldococcus vulcanius M7]
          Length = 217

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 31  LDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +D  +   I   +     G  VI++G G G L      LGA++ I I+ D++   + K+ 
Sbjct: 29  IDGKLAGDILYFAINDFYGNVVIDLGCGTGKLAIGSKLLGAKRAIGIDIDKESIKVAKEN 88

Query: 90  SSQHPNRLEIIQDDALKVDFE 110
           + +    +E    D  ++D +
Sbjct: 89  AKKVNADVEFYCKDIREIDRQ 109


>gi|126731393|ref|ZP_01747200.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Sagittula
           stellata E-37]
 gi|126708304|gb|EBA07363.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Sagittula
           stellata E-37]
          Length = 402

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 20/123 (16%)

Query: 1   MTMNNKSHSLKTILSHYKI----------------IPKKYMGQNFLLDLNILK--KIAES 42
           M  N++  + + I  HY +                      GQ  L +  I K   + ++
Sbjct: 121 MVRNSRRQARRNIAHHYDLGNDFYGLWLDETMTYSSALFETGQESLENAQIAKYAALVDA 180

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEII 100
             +  G  V+EIG G G   +        +V  +   ++     +D        +R+EI 
Sbjct: 181 MEAQPGDHVLEIGCGWGGFAEYAARERGLRVTGLTLSKEQHDYARDRMRREGLADRVEIK 240

Query: 101 QDD 103
             D
Sbjct: 241 LQD 243


>gi|49481067|ref|YP_035660.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332623|gb|AAT63269.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 258

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +++ +S  S+    +++IG G G  T+ L  +GA+ V+ I+  ++     K+  S   N 
Sbjct: 24  REMIKSITSIQNKRIVDIGCGGGIYTKELALMGAKSVVGIDFSKEILQAAKENCSGFSN- 82

Query: 97  LEIIQDDA 104
           +  I  DA
Sbjct: 83  ISFIHGDA 90


>gi|19745287|ref|NP_606423.1| hypothetical protein spyM18_0110 [Streptococcus pyogenes MGAS8232]
 gi|139472971|ref|YP_001127686.1| hypothetical protein SpyM50091 [Streptococcus pyogenes str.
           Manfredo]
 gi|19747385|gb|AAL96922.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|134271217|emb|CAM29433.1| conserved hypothetical protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 317

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLE 98
           E     D + V+EIG+G GNL Q LL   ++ +  + IE D     +   I+    +   
Sbjct: 103 EQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSSAH 162

Query: 99  IIQDDALK 106
            IQ+DA++
Sbjct: 163 FIQEDAVR 170


>gi|89069403|ref|ZP_01156758.1| hypothetical fusion protein [Oceanicola granulosus HTCC2516]
 gi|89045033|gb|EAR51111.1| hypothetical fusion protein [Oceanicola granulosus HTCC2516]
          Length = 653

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E+     G  V+E+G G G    +L  + A  V  IE+        ++  + 
Sbjct: 54  PYIVALMIEAVEVRPGERVLEVGTGSGYAAAILAEI-AGAVHSIERHAPLAGTARERLAA 112

Query: 93  H-PNRLEIIQDD 103
                +E+   D
Sbjct: 113 AGYGSVEVHVGD 124


>gi|309361472|emb|CAP29757.2| hypothetical protein CBG_10216 [Caenorhabditis briggsae AF16]
          Length = 356

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 13/154 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEK--------DQ- 80
            ++  L+KI +  G  +    +++G+G G L T          V  IE         D+ 
Sbjct: 180 TNIETLQKILDLLGVKEDDVFMDLGSGIGQLVTFAAAYTNIAHVRGIELQQVPAGFADEN 239

Query: 81  -QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            + F  L     + P   E+   D    + E F    + I    NL ++    L+    +
Sbjct: 240 VRQFKKLMRHFGEKPRPFELKLGDFNTEEIETFLKEKATIIFCNNLAFD--PDLMIKLRA 297

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
              +      + +  + E  ++    ++   Y R
Sbjct: 298 ILQFCNNGTKIVVTQKLETTKKGRTPRDYFGYCR 331


>gi|289192477|ref|YP_003458418.1| tRNA (adenine-N(1)-)-methyltransferase [Methanocaldococcus sp.
           FS406-22]
 gi|288938927|gb|ADC69682.1| tRNA (adenine-N(1)-)-methyltransferase [Methanocaldococcus sp.
           FS406-22]
          Length = 282

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD 88
           I   +G  +G TV+E G G G LT  L     +  KVI  +   +F  + + 
Sbjct: 79  IIARAGIREGETVVEAGTGSGALTMYLSNAVGKTGKVITYDIRPEFAKVARK 130


>gi|209964251|ref|YP_002297166.1| SAM-dependent methyltransferase, putative [Rhodospirillum
          centenum SW]
 gi|209957717|gb|ACI98353.1| SAM-dependent methyltransferase, putative [Rhodospirillum
          centenum SW]
          Length = 257

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
          +      G  ++++G G G LT  L   G   V+  + D    
Sbjct: 34 DLLDPCPGERILDLGCGDGALTAELAARGVD-VVAADADPDMV 75


>gi|152965823|ref|YP_001361607.1| tRNA methyltransferase complex GCD14 subunit [Kineococcus
           radiotolerans SRS30216]
 gi|151360340|gb|ABS03343.1| tRNA methyltransferase complex GCD14 subunit [Kineococcus
           radiotolerans SRS30216]
          Length = 363

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI 85
           +I + +    G TVIE G G G LT  LL     +  V   E+ Q F  +
Sbjct: 101 QIVQMADVFPGATVIEAGVGSGALTMSLLRAVGDSGHVHSFERRQDFADV 150


>gi|116668764|ref|YP_829697.1| methyltransferase type 11 [Arthrobacter sp. FB24]
 gi|116608873|gb|ABK01597.1| Methyltransferase type 11 [Arthrobacter sp. FB24]
          Length = 213

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 24  YMGQNFL-----LDLNIL----KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             GQ+F      +D        +++ E++      TV+EIGAG G  T          V+
Sbjct: 10  SFGQHFARVGPRMDARGAADHRRRLVEAAH----GTVVEIGAGYGA-TFPFYPSAVTSVL 64

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            +E D     +    + + P  + +    A
Sbjct: 65  ALEPDPTLRALALAEAIRAPVPITVQDGTA 94


>gi|297560601|ref|YP_003679575.1| protein-L-isoaspartate(D-aspartate) O-methyl transferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296845049|gb|ADH67069.1| protein-L-isoaspartate(D-aspartate) O-methyl transferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 378

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             ++  +  ++G  +G+ V+E+G G G    +   L+      V  IE D     + ++ 
Sbjct: 99  PQVMADMIAAAGISEGMRVLEVGTGTGWNAAILAALVGEKG-SVTSIEIDLGVAALARER 157

Query: 90  SSQ 92
            + 
Sbjct: 158 LTG 160


>gi|226360731|ref|YP_002778509.1| hypothetical protein ROP_13170 [Rhodococcus opacus B4]
 gi|226239216|dbj|BAH49564.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 377

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK 111
           IG G G L  +L   G  KVI  E D       +    +  + +R+++++ D        
Sbjct: 200 IGTGTGVLAAVLAHRGVEKVISTELDANALACARANLDRLGYSDRVQVVETD-------- 251

Query: 112 FFNISSPIRIIANLPY 127
            F       ++ N P+
Sbjct: 252 LFPEGRAPLVVCNPPW 267


>gi|261420271|ref|YP_003253953.1| methyltransferase type 11 [Geobacillus sp. Y412MC61]
 gi|319767081|ref|YP_004132582.1| methyltransferase type 11 [Geobacillus sp. Y412MC52]
 gi|261376728|gb|ACX79471.1| Methyltransferase type 11 [Geobacillus sp. Y412MC61]
 gi|317111947|gb|ADU94439.1| Methyltransferase type 11 [Geobacillus sp. Y412MC52]
          Length = 189

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
               T++++G+G G  T  L      KV  I+   +   +LK  + Q  
Sbjct: 34 VKPNDTIVDLGSGNGYFTIPLAQATNGKVYAIDVQPEMIQLLKKRAQQFA 83


>gi|195155436|ref|XP_002018610.1| GL25862 [Drosophila persimilis]
 gi|194114763|gb|EDW36806.1| GL25862 [Drosophila persimilis]
          Length = 244

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             ++  L G  ++E+G G G LT+ L  LGA +V  I+  ++     +D  ++    L
Sbjct: 84  VNTTKVLKGQRLLEVGCGGGLLTEQLARLGA-QVTGIDLAEKLIAAARDHLTELSPEL 140


>gi|21227004|ref|NP_632926.1| putative methyltransferase [Methanosarcina mazei Go1]
 gi|20905322|gb|AAM30598.1| putative methyltransferase [Methanosarcina mazei Go1]
          Length = 279

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                  V++IGAGPG+L   L  + A  V  +E  +    ILK     +  R      D
Sbjct: 59  ALTPESRVLDIGAGPGSLAIPLAEMVAH-VTAVEPAEGMMEILKQNMETYGTR----NID 113

Query: 104 ALKVDFEKF---FNISSPIRII 122
            +  D+E      ++  P  ++
Sbjct: 114 CVYKDWETVDAGSDLCPPYDVV 135


>gi|323454826|gb|EGB10695.1| hypothetical protein AURANDRAFT_22105 [Aureococcus anophagefferens]
          Length = 155

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNR 96
           I   +       V+++G G G L       GAR+V  +E+  +     + +++ H   + 
Sbjct: 39  ILNDAAHFKDKVVLDVGTGTGVLAIWAAEAGARRVYAVEQSSEVAECARTMAAHHGVADV 98

Query: 97  LEIIQD 102
           +E+++ 
Sbjct: 99  VEVLEG 104


>gi|288934044|ref|YP_003438103.1| methyltransferase small [Klebsiella variicola At-22]
 gi|288888773|gb|ADC57091.1| methyltransferase small [Klebsiella variicola At-22]
          Length = 245

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD--ISSQHPNRLE 98
           +       V++IGAG G L  ML        +V  +E D++     ++  ++S   +R+E
Sbjct: 40  APIAGVKHVLDIGAGSGLLALMLAQRTGHDVQVDAVELDEEAAAQARENALASPWSSRIE 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + Q D       +         II+N P+
Sbjct: 100 VCQADI---HQWQPSQTRRYELIISNPPF 125


>gi|229541629|ref|ZP_04430689.1| Methyltransferase type 12 [Bacillus coagulans 36D1]
 gi|229326049|gb|EEN91724.1| Methyltransferase type 12 [Bacillus coagulans 36D1]
          Length = 733

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 27  QNFLLDLNIL---KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQF 82
           Q++L D+N     KKI   +    G  +I++GAG G +  +L        +  I+     
Sbjct: 416 QHYLADMNNAEDHKKII--ADFAKGTVMIDVGAGGGIMLDLLSEKHPDADITGIDISTNV 473

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
              L+    +     ++ Q DALK+    F   S+   I +++ + + + + F+
Sbjct: 474 IQELERKKVRERKSWKVKQADALKL-SSYFELESADTIIFSSILHEMYSYIPFH 526


>gi|260814339|ref|XP_002601873.1| hypothetical protein BRAFLDRAFT_215283 [Branchiostoma floridae]
 gi|229287175|gb|EEN57885.1| hypothetical protein BRAFLDRAFT_215283 [Branchiostoma floridae]
          Length = 320

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNR 96
           I      + G  V+++GAG G L+   +  GARKV  IE         + +   +    R
Sbjct: 24  ILRCWEQIRGKVVVDVGAGTGILSLFSVQAGARKVYAIEA-SVLAEETRKVVKANGMEGR 82

Query: 97  LEIIQDDALKVDFEKFFNI 115
           +E++   A +V+  +  ++
Sbjct: 83  IEVLHGRAEEVELPEKADV 101


>gi|220905754|ref|YP_002481065.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219862365|gb|ACL42704.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 259

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N+   I     +    T +E G G G L  + L      V  I+  Q      +   S+
Sbjct: 41  ENVADFILTLVKATPETTFLEPGVGTG-LNVLPLVRSGYSVTGIDVSQAMLNQFRQKLSE 99

Query: 93  HPNRLEIIQDDALKVDFEKF 112
            P  L++I  DA ++ F   
Sbjct: 100 IPPNLKLIHGDASQLPFSDI 119


>gi|169629245|ref|YP_001702894.1| hypothetical protein MAB_2159 [Mycobacterium abscessus ATCC 19977]
 gi|169241212|emb|CAM62240.1| Conserved hypothetical protein (RNA methyltransferase?)
           [Mycobacterium abscessus]
          Length = 278

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL        VI  E  +         +   
Sbjct: 88  AAQIVHDGDIFPGARVLEAGAGSGALTCSLLRAVGPQGAVISYEIREDHAEHAVRNVTTF 147

Query: 90  SSQHPNRLEIIQDD 103
             + P+  +++  D
Sbjct: 148 FGERPDNWDLVIGD 161


>gi|20089725|ref|NP_615800.1| hypothetical protein MA0841 [Methanosarcina acetivorans C2A]
 gi|19914657|gb|AAM04280.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 302

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +G  V++IG GPG L+  L  LGA +V  ++        LKD   +    +++I+ 
Sbjct: 86  EGSRVLDIGCGPGTLSLPLSRLGA-EVTALDISSGMLDRLKDAVKKESLPVDVIEC 140


>gi|13475202|ref|NP_106766.1| methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14025953|dbj|BAB52552.1| methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 258

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I        G +V+E+G G G +T  L   GA  V+ ++         +  +++   ++E
Sbjct: 47  IWNLLSLGQGSSVLELGCGYGRITNRLAKKGAH-VVGLDISPILLKEAETDAAERGVKVE 105

Query: 99  IIQDDALKVDFEKFFN 114
            +  D   + +   F+
Sbjct: 106 YVLGDMRSLPWRDRFD 121


>gi|15607470|ref|NP_214843.1| hypothetical protein Rv0329c [Mycobacterium tuberculosis H37Rv]
 gi|15839716|ref|NP_334753.1| hypothetical protein MT0344 [Mycobacterium tuberculosis CDC1551]
 gi|148660095|ref|YP_001281618.1| hypothetical protein MRA_0338 [Mycobacterium tuberculosis H37Ra]
 gi|148821525|ref|YP_001286279.1| hypothetical protein TBFG_10334 [Mycobacterium tuberculosis F11]
 gi|167967767|ref|ZP_02550044.1| hypothetical protein MtubH3_06913 [Mycobacterium tuberculosis
           H37Ra]
 gi|215406333|ref|ZP_03418514.1| hypothetical protein Mtub0_22121 [Mycobacterium tuberculosis
           02_1987]
 gi|215409839|ref|ZP_03418647.1| hypothetical protein Mtub9_00610 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215425546|ref|ZP_03423465.1| hypothetical protein MtubT9_03826 [Mycobacterium tuberculosis T92]
 gi|215429152|ref|ZP_03427071.1| hypothetical protein MtubE_00280 [Mycobacterium tuberculosis
           EAS054]
 gi|215444413|ref|ZP_03431165.1| hypothetical protein MtubT_00265 [Mycobacterium tuberculosis T85]
 gi|218751959|ref|ZP_03530755.1| hypothetical protein MtubG1_00275 [Mycobacterium tuberculosis GM
           1503]
 gi|219556138|ref|ZP_03535214.1| hypothetical protein MtubT1_02100 [Mycobacterium tuberculosis T17]
 gi|253797255|ref|YP_003030256.1| hypothetical protein TBMG_00333 [Mycobacterium tuberculosis KZN
           1435]
 gi|254230695|ref|ZP_04924022.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254363297|ref|ZP_04979343.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549272|ref|ZP_05139719.1| hypothetical protein Mtube_02221 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260185200|ref|ZP_05762674.1| hypothetical protein MtubCP_04020 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260199329|ref|ZP_05766820.1| hypothetical protein MtubT4_04125 [Mycobacterium tuberculosis T46]
 gi|289441709|ref|ZP_06431453.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289445868|ref|ZP_06435612.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289552581|ref|ZP_06441791.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289568240|ref|ZP_06448467.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289748098|ref|ZP_06507476.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289748812|ref|ZP_06508190.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289752359|ref|ZP_06511737.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289756393|ref|ZP_06515771.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289760438|ref|ZP_06519816.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297632814|ref|ZP_06950594.1| hypothetical protein MtubK4_01756 [Mycobacterium tuberculosis KZN
           4207]
 gi|297729789|ref|ZP_06958907.1| hypothetical protein MtubKR_01786 [Mycobacterium tuberculosis KZN
           R506]
 gi|298523806|ref|ZP_07011215.1| MitM-related protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306774422|ref|ZP_07412759.1| hypothetical protein TMAG_03697 [Mycobacterium tuberculosis
           SUMu001]
 gi|306779168|ref|ZP_07417505.1| hypothetical protein TMBG_03558 [Mycobacterium tuberculosis
           SUMu002]
 gi|306782955|ref|ZP_07421277.1| hypothetical protein TMCG_03012 [Mycobacterium tuberculosis
           SUMu003]
 gi|306787323|ref|ZP_07425645.1| hypothetical protein TMDG_02523 [Mycobacterium tuberculosis
           SUMu004]
 gi|306791876|ref|ZP_07430178.1| hypothetical protein TMEG_02901 [Mycobacterium tuberculosis
           SUMu005]
 gi|306796062|ref|ZP_07434364.1| hypothetical protein TMFG_01618 [Mycobacterium tuberculosis
           SUMu006]
 gi|306801922|ref|ZP_07438590.1| hypothetical protein TMHG_03340 [Mycobacterium tuberculosis
           SUMu008]
 gi|306806133|ref|ZP_07442801.1| hypothetical protein TMGG_03334 [Mycobacterium tuberculosis
           SUMu007]
 gi|306966331|ref|ZP_07478992.1| hypothetical protein TMIG_01218 [Mycobacterium tuberculosis
           SUMu009]
 gi|306970526|ref|ZP_07483187.1| hypothetical protein TMJG_02064 [Mycobacterium tuberculosis
           SUMu010]
 gi|307078254|ref|ZP_07487424.1| hypothetical protein TMKG_02655 [Mycobacterium tuberculosis
           SUMu011]
 gi|313657118|ref|ZP_07813998.1| hypothetical protein MtubKV_01786 [Mycobacterium tuberculosis KZN
           V2475]
 gi|2193950|emb|CAB09577.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13879840|gb|AAK44567.1| MitM-related protein [Mycobacterium tuberculosis CDC1551]
 gi|124599754|gb|EAY58764.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134148811|gb|EBA40856.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148504247|gb|ABQ72056.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148720052|gb|ABR04677.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253318758|gb|ACT23361.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289414628|gb|EFD11868.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289418826|gb|EFD16027.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289437213|gb|EFD19706.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289541993|gb|EFD45642.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289688626|gb|EFD56114.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289689399|gb|EFD56828.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289692946|gb|EFD60375.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289707944|gb|EFD71960.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289711957|gb|EFD75969.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298493600|gb|EFI28894.1| MitM-related protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308217016|gb|EFO76415.1| hypothetical protein TMAG_03697 [Mycobacterium tuberculosis
           SUMu001]
 gi|308327878|gb|EFP16729.1| hypothetical protein TMBG_03558 [Mycobacterium tuberculosis
           SUMu002]
 gi|308332235|gb|EFP21086.1| hypothetical protein TMCG_03012 [Mycobacterium tuberculosis
           SUMu003]
 gi|308335999|gb|EFP24850.1| hypothetical protein TMDG_02523 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339619|gb|EFP28470.1| hypothetical protein TMEG_02901 [Mycobacterium tuberculosis
           SUMu005]
 gi|308343528|gb|EFP32379.1| hypothetical protein TMFG_01618 [Mycobacterium tuberculosis
           SUMu006]
 gi|308347391|gb|EFP36242.1| hypothetical protein TMGG_03334 [Mycobacterium tuberculosis
           SUMu007]
 gi|308351318|gb|EFP40169.1| hypothetical protein TMHG_03340 [Mycobacterium tuberculosis
           SUMu008]
 gi|308355966|gb|EFP44817.1| hypothetical protein TMIG_01218 [Mycobacterium tuberculosis
           SUMu009]
 gi|308359923|gb|EFP48774.1| hypothetical protein TMJG_02064 [Mycobacterium tuberculosis
           SUMu010]
 gi|308363822|gb|EFP52673.1| hypothetical protein TMKG_02655 [Mycobacterium tuberculosis
           SUMu011]
 gi|323721278|gb|EGB30335.1| hypothetical protein TMMG_04005 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326906082|gb|EGE53015.1| hypothetical protein TBPG_04061 [Mycobacterium tuberculosis W-148]
 gi|328457042|gb|AEB02465.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 208

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 36  LKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-- 92
           + +I  E      G  V EIG GPG  T  LL     +V  +E       I    +++  
Sbjct: 37  VNRIAVELLAPGPGERVCEIGFGPGR-TLGLLAAAGAQVSGVEVSTTMIAIAAHHNAKAI 95

Query: 93  HPNRLEIIQDDALKVDFEKF 112
               + +   D + +     
Sbjct: 96  AAGLISLYHGDGVTLPVADH 115


>gi|270015512|gb|EFA11960.1| hypothetical protein TcasGA2_TC004041 [Tribolium castaneum]
          Length = 524

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 33  LNILKKIAESSG----------SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
             I   I  S+            + G++++E+G G G LT+ L  +GA  V  ++ +   
Sbjct: 239 PFIRDGIINSAVMLQEHINISLPIKGLSILEVGCGGGILTEPLARIGAD-VTGLDANPDL 297

Query: 83  FPILKDISSQHPN 95
                 + S++ N
Sbjct: 298 IER-AKLHSKNDN 309


>gi|268324008|emb|CBH37596.1| conserved hypothetical protein, SAM dependent methyltransferase
           family [uncultured archaeon]
          Length = 201

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLE 98
           +          +EIG G G L  M L    +    I+       I ++ + +    +R+E
Sbjct: 37  DKLQLKPDDVFLEIGCGGGVLLNMALET-VKHAKAIDHSSDMVQIAREKNHEAVSESRVE 95

Query: 99  IIQDDA--LKVDFEKF 112
           I+Q +A  L  D   F
Sbjct: 96  IVQGNAESLPWDDNSF 111


>gi|256374348|ref|YP_003098008.1| protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Actinosynnema mirum DSM 43827]
 gi|255918651|gb|ACU34162.1| protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Actinosynnema mirum DSM 43827]
          Length = 404

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             ++ ++ E+    DG  V+EIG G G N   +   LG   V  ++ +     + +   +
Sbjct: 100 PGLMTRMLEALDIRDGHRVLEIGTGTGYNAALLSHRLGGENVFSVDVEPDLVDLARSRLA 159

Query: 92  QHPNRLEIIQDD-ALKVDFEKFFNISSPIRIIANLPY 127
           +  +   ++  + AL +     F+       +  +P+
Sbjct: 160 ELGHAPTLVAANGALGLAEHAPFDRIIATCAVPAIPW 196


>gi|239628589|ref|ZP_04671620.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239518735|gb|EEQ58601.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 1331

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
                  V+EIG+G G  T +L    A   +V ++D+   
Sbjct: 49 LDLTGQEQVLEIGSGYGVFTGLLAERCAHVTVVDDRDENLL 89


>gi|237841773|ref|XP_002370184.1| calpain, putative [Toxoplasma gondii ME49]
 gi|211967848|gb|EEB03044.1| calpain, putative [Toxoplasma gondii ME49]
 gi|221482649|gb|EEE20987.1| methyltransferase family protein [Toxoplasma gondii GT1]
 gi|221503157|gb|EEE28863.1| methyltransferase domain-containing protein [Toxoplasma gondii VEG]
          Length = 512

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH------PNRLEIIQD 102
            TV+E+GAG G LT++L    A+ V V   D      +K     H       N L ++  
Sbjct: 313 DTVLELGAGIGRLTRLLQEFAAQVVAVDFVD----EYVKANRDAHGSCHSRKNDLFVV-A 367

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           DA  ++F      +        LP+   +   F+ I
Sbjct: 368 DATTIEFP--LATNDQRVFTTGLPHKTESPSTFDLI 401


>gi|189241969|ref|XP_001810766.1| PREDICTED: similar to hexaprenyldihydroxybenzoate methyltransferase
           [Tribolium castaneum]
          Length = 411

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 33  LNILKKIAESSG----------SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
             I   I  S+            + G++++E+G G G LT+ L  +GA  V  ++ +   
Sbjct: 202 PFIRDGIINSAVMLQEHINISLPIKGLSILEVGCGGGILTEPLARIGAD-VTGLDANPDL 260

Query: 83  FPILKDISSQHPN 95
                 + S++ N
Sbjct: 261 IER-AKLHSKNDN 272


>gi|148642298|ref|YP_001272811.1| precorrin-6B methylase, CbiT [Methanobrevibacter smithii ATCC
           35061]
 gi|222444531|ref|ZP_03607046.1| hypothetical protein METSMIALI_00143 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350930|ref|ZP_05976347.1| putative cobalt-precorrin-6Y C(15)-methyltransferase
           [Methanobrevibacter smithii DSM 2374]
 gi|166225722|sp|A5UJR5|CBIT_METS3 RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|148551315|gb|ABQ86443.1| precorrin-6B methylase, CbiT [Methanobrevibacter smithii ATCC
           35061]
 gi|222434096|gb|EEE41261.1| hypothetical protein METSMIALI_00143 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860268|gb|EFC92566.1| putative cobalt-precorrin-6Y C(15)-methyltransferase
           [Methanobrevibacter smithii DSM 2374]
          Length = 187

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 36  LKKIA-ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++ I    S       V+++G G G +T       A+KV  I+ +     + K    +  
Sbjct: 21  IRAIILYKSAVTPNDEVVDVGCGTGGITCEFAQR-AKKVTSIDTNPDAISVTKQNLEKFN 79

Query: 95  --NRLEIIQD---DALK 106
             + +E+I D   +ALK
Sbjct: 80  LGDNVELINDSGSNALK 96


>gi|147669976|ref|YP_001214794.1| methyltransferase type 11 [Dehalococcoides sp. BAV1]
 gi|146270924|gb|ABQ17916.1| Methyltransferase type 11 [Dehalococcoides sp. BAV1]
          Length = 220

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +K  +++       +I++  G G  T+++   L   +V  ++         K+     P 
Sbjct: 42  RKFVDAANIQPADNIIDMCCGTGATTRLVAGKLKGGQVTGVDLSLDMMARAKEKVVGMPA 101

Query: 96  RLEIIQDDALKVDFEKF 112
             +    D L      F
Sbjct: 102 VFQQASGDNLPFPEGAF 118


>gi|116249562|ref|YP_765400.1| putative O-methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254210|emb|CAK03823.1| putative O-methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 275

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G  V+E+G G G     L++  AR V  IE+ ++     ++   +
Sbjct: 63  PFIVALMLEKANLNAGDKVLEVGTGSGY-ASALISRIARHVYSIERHEKLALQARERFEK 121

Query: 93  HPNR-LEIIQDD 103
              R +++   D
Sbjct: 122 LGYRNIDVHVGD 133


>gi|95007176|emb|CAJ20397.1| hypothetical protein TgIa.1450 [Toxoplasma gondii RH]
          Length = 537

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH------PNRLEIIQD 102
            TV+E+GAG G LT++L    A+ V V   D      +K     H       N L ++  
Sbjct: 338 DTVLELGAGIGRLTRLLQEFAAQVVAVDFVD----EYVKANRDAHGSCHSRKNDLFVV-A 392

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           DA  ++F      +        LP+   +   F+ I
Sbjct: 393 DATTIEFP--LATNDQRVFTTGLPHKTESPSTFDLI 426


>gi|56808822|ref|ZP_00366535.1| COG0827: Adenine-specific DNA methylase [Streptococcus pyogenes M49
           591]
 gi|209558673|ref|YP_002285145.1| Adenine-specific methyltransferase [Streptococcus pyogenes NZ131]
 gi|209539874|gb|ACI60450.1| Adenine-specific methyltransferase [Streptococcus pyogenes NZ131]
          Length = 317

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLE 98
           E     D + V+EIG+G GNL Q LL   ++ +  + IE D     +   I+    +   
Sbjct: 103 EQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSSAH 162

Query: 99  IIQDDALK 106
            IQ+DA++
Sbjct: 163 FIQEDAVR 170


>gi|332652543|ref|ZP_08418288.1| ribosomal protein L11 methyltransferase [Ruminococcaceae bacterium
           D16]
 gi|332517689|gb|EGJ47292.1| ribosomal protein L11 methyltransferase [Ruminococcaceae bacterium
           D16]
          Length = 323

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEI 99
           + +  G  V+++G G G L+   L LGA   + ++ D +   +  + ++ +    +R  +
Sbjct: 174 AHTKAGDDVLDLGCGSGILSIAALVLGASHALAVDIDPKAVDVAYENAALNGIGKDRYTV 233

Query: 100 IQDDAL 105
              D L
Sbjct: 234 RAGDVL 239


>gi|301165686|emb|CBW25258.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 209

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            +  +V+E+G   GNLT           + ++ D +     K       N +  +  D  
Sbjct: 34  NNESSVLEVGCSLGNLTPAFAPYHNMTYLGVDIDSRVIGYAKKSFRNIEN-VSFVCADLR 92

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           K+  E+ F+    + ++  + +++   LL   + + 
Sbjct: 93  KMSREEKFD----LVMLPGMLHHVSDELLVELLRSA 124


>gi|296536541|ref|ZP_06898628.1| methionine biosynthesis MetW [Roseomonas cervicalis ATCC 49957]
 gi|296263137|gb|EFH09675.1| methionine biosynthesis MetW [Roseomonas cervicalis ATCC 49957]
          Length = 213

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             P +Y+ +N  LDL ++ ++        G  V++IG G G L + L          IE 
Sbjct: 5   HAPVRYVAKNMRLDLRLIAEMIA-----PGTRVLDIGCGDGALLEHLEREKNADARGIEI 59

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDA 104
           D          ++     L +I  DA
Sbjct: 60  DMD------QATAAVAQGLAVIHGDA 79


>gi|295840014|ref|ZP_06826947.1| methyltransferase [Streptomyces sp. SPB74]
 gi|295827765|gb|EDY46746.2| methyltransferase [Streptomyces sp. SPB74]
          Length = 412

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80
            +++  +   +G   G  V+EIG G G  T ++   LGA  V  +E D 
Sbjct: 125 PSLVVDMLGKAGIERGHKVLEIGTGTGYSTALMCHWLGADAVTTVEVDP 173


>gi|209916867|ref|YP_002291187.1| hypothetical protein ECSE_P2-0038 [Escherichia coli SE11]
 gi|209915293|dbj|BAG80365.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 187

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFP 84
            Q F+    +  ++   +   +   ++E  AG G + + +       +   +E +     
Sbjct: 29  SQLFVTPAPVCDRLVMLAEISNRDHILEPSAGTGAILRAIRDTAPGAMCDAVEINSGLVR 88

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L+D      N + +   D ++    ++++     RII N P++ G  +
Sbjct: 89  YLRDNF----NGVRVQCCDFMEWQPVQYYS-----RIIMNPPFSHGQDI 128


>gi|75762557|ref|ZP_00742412.1| N-METHYL-TRANSFERASE [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228901354|ref|ZP_04065546.1| hypothetical protein bthur0014_25460 [Bacillus thuringiensis IBL
           4222]
 gi|74489959|gb|EAO53320.1| N-METHYL-TRANSFERASE [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228858278|gb|EEN02746.1| hypothetical protein bthur0014_25460 [Bacillus thuringiensis IBL
           4222]
          Length = 247

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  INNENWLQEVAKEVQEQVGYPIQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  N +E+   D  K++F++ F++
Sbjct: 76  AMFAKEHATNDIEVHCADFYKINFKEKFDV 105


>gi|296273156|ref|YP_003655787.1| cyclopropane-fatty-acyl-phospholipid synthase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097330|gb|ADG93280.1| Cyclopropane-fatty-acyl-phospholipid synthase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 408

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 37  KKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           +KI   A       G  V+EIG+G G++   L      KV  +    +   + ++   +H
Sbjct: 167 RKIEHLANKLNIKKGDNVLEIGSGWGSMALHLAKEKQCKVTTVTLSTEQKRLCEEKFKEH 226

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
                I   D L  D+         I  +   
Sbjct: 227 KVEESI---DILLKDYRDLEGKFDAIIAVEMF 255


>gi|222147086|ref|YP_002548043.1| cyclopropane-fatty-acyl-phospholipid synthase [Agrobacterium vitis
           S4]
 gi|221734076|gb|ACM35039.1| cyclopropane-fatty-acyl-phospholipid synthase [Agrobacterium vitis
           S4]
          Length = 404

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 17/116 (14%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHP 94
           ++I E         ++EIG G G   +  +     +V  +    +     +     + + 
Sbjct: 179 QRIVEQLALGPDDHLLEIGCGWGGFAEHAIRASGCRVTGLTLSTEQAAYARQRMQTAGYA 238

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +R +I  +D                R +      I +  +F  +  + WP ++  +
Sbjct: 239 DRCDIRLED---------------YRDVQGRFTKIVSIEMFEAVGEENWPVYFNRV 279


>gi|218437906|ref|YP_002376235.1| methyltransferase type 11 [Cyanothece sp. PCC 7424]
 gi|218170634|gb|ACK69367.1| Methyltransferase type 11 [Cyanothece sp. PCC 7424]
          Length = 247

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 66/163 (40%), Gaps = 16/163 (9%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +  G+++  +++++G G G  T++    GA  V+ ++  ++     ++  +QHP  ++ +
Sbjct: 31  KLVGNVENKSLLDLGCGGGFYTRIFREQGANPVVGVDISEKMLEFAQEKEAQHPLGIQYL 90

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
             D  +++    F+    + I + L  +  T      I+  +     E    +   E  +
Sbjct: 91  LKDVTELEQIGHFD----LVISSYLLNDFSTPEQLLKIAQISSNNLKEGGRFIGINENVQ 146

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFD----ISPHVFFPSP 199
           ++        Y   SV   +     ++ D    +   V +P P
Sbjct: 147 QL-----PETY---SVCRQYGYTKELLGDFVEGVQIRVTYPVP 181


>gi|31791507|ref|NP_854000.1| hypothetical protein Mb0336c [Mycobacterium bovis AF2122/97]
 gi|121636243|ref|YP_976466.1| hypothetical protein BCG_0368c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224988716|ref|YP_002643403.1| hypothetical protein JTY_0338 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|31617093|emb|CAD93200.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491890|emb|CAL70353.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224771829|dbj|BAH24635.1| hypothetical protein JTY_0338 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 208

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 36  LKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-- 92
           + +I  E      G  V EIG GPG  T  LL     +V  +E       I    +++  
Sbjct: 37  VNRIAVELLAPGPGERVCEIGFGPGR-TLGLLAAAGAQVSGVEVSTTMIAIAAHHNAKAI 95

Query: 93  HPNRLEIIQDDALKVDFEKF 112
               + +   D + +     
Sbjct: 96  AAGLISLYHGDGVTLPVADH 115


>gi|21909621|ref|NP_663889.1| hypothetical protein SpyM3_0085 [Streptococcus pyogenes MGAS315]
 gi|28894998|ref|NP_801348.1| hypothetical protein SPs0086 [Streptococcus pyogenes SSI-1]
 gi|21903803|gb|AAM78692.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28810243|dbj|BAC63181.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 317

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLE 98
           E     D + V+EIG+G GNL Q LL   ++ +  + IE D     +   I+    +   
Sbjct: 103 EQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSSAH 162

Query: 99  IIQDDALK 106
            IQ+DA++
Sbjct: 163 FIQEDAVR 170


>gi|163846009|ref|YP_001634053.1| type 11 methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222523735|ref|YP_002568205.1| type 11 methyltransferase [Chloroflexus sp. Y-400-fl]
 gi|163667298|gb|ABY33664.1| Methyltransferase type 11 [Chloroflexus aurantiacus J-10-fl]
 gi|222447614|gb|ACM51880.1| Methyltransferase type 11 [Chloroflexus sp. Y-400-fl]
          Length = 273

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +   I + I + +G   G  V+EIG G G +   +   GA  VI I+       +    +
Sbjct: 24  VSTAIGQAIVDQAG--SGARVLEIGIGSGRIALPVAAAGA-TVIGIDISAGMLHVAHRRA 80

Query: 91  SQHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPY 127
            +    L ++Q DA  + F    F+    + ++  LP 
Sbjct: 81  EETGTPLHLVQADAQYLPFATATFDAVLAVHVLHLLPN 118


>gi|326940587|gb|AEA16483.1| O-antigen biosynthesis protein rfbC [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 164

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  INNENWLQEVAKEVQEQVGYPIQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  N +E+   D  K++F++ F++
Sbjct: 76  AMFAKEHSTNDIEVHCADFYKINFKEKFDV 105


>gi|311746101|ref|ZP_07719886.1| methyltransferase [Algoriphagus sp. PR1]
 gi|311302468|gb|EAZ80598.2| methyltransferase [Algoriphagus sp. PR1]
          Length = 238

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS 91
          L+IL K  +++G      ++E+G G G ++ +L   +   +V+ ++   +     K I  
Sbjct: 29 LSILDK-VKAAGLEKHHRILEVGCGIGTVSSLLASQVPQGEVLAVDISPESIDKAKVIWK 87

Query: 92 QHPN-RLEI 99
          +H N + E+
Sbjct: 88 EHKNLKFEV 96


>gi|228939934|ref|ZP_04102510.1| hypothetical protein bthur0008_25860 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972826|ref|ZP_04133423.1| hypothetical protein bthur0003_25920 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979408|ref|ZP_04139742.1| hypothetical protein bthur0002_25890 [Bacillus thuringiensis Bt407]
 gi|228780308|gb|EEM28541.1| hypothetical protein bthur0002_25890 [Bacillus thuringiensis Bt407]
 gi|228786877|gb|EEM34859.1| hypothetical protein bthur0003_25920 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819725|gb|EEM65774.1| hypothetical protein bthur0008_25860 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 247

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  INNENWLQEVAKEVQEQVGYPIQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  N +E+   D  K++F++ F++
Sbjct: 76  AMFAKEHSTNDIEVHCADFYKINFKEKFDV 105


>gi|229046512|ref|ZP_04192167.1| hypothetical protein bcere0027_25360 [Bacillus cereus AH676]
 gi|228724874|gb|EEL76176.1| hypothetical protein bcere0027_25360 [Bacillus cereus AH676]
          Length = 247

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  INNENWLQEVAKEVQEQVGYPIQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  N +E+   D  K++F++ F++
Sbjct: 76  AMFAKEHSTNDIEVHCADFYKINFKEKFDV 105


>gi|229145388|ref|ZP_04273776.1| hypothetical protein bcere0012_25450 [Bacillus cereus BDRD-ST24]
 gi|228638060|gb|EEK94502.1| hypothetical protein bcere0012_25450 [Bacillus cereus BDRD-ST24]
          Length = 247

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  INNENWLQEVAKEVQEQVGYPIQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  N +E+   D  K++F++ F++
Sbjct: 76  AMFAKEHSTNDIEVHCADFYKINFKEKFDV 105


>gi|196036882|ref|ZP_03104268.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus W]
 gi|195990504|gb|EDX54486.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus W]
          Length = 258

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +++ +S  S+    +++IG G G  T+ L  +GA+ V+ I+  ++     K+  S   N 
Sbjct: 24  REMIKSITSIQNKRIVDIGCGGGIYTKELALMGAKSVVGIDFSKEILQAAKENCSGFSN- 82

Query: 97  LEIIQDDA 104
           +  I  DA
Sbjct: 83  ISFIHGDA 90


>gi|119716274|ref|YP_923239.1| methyltransferase type 11 [Nocardioides sp. JS614]
 gi|119536935|gb|ABL81552.1| Methyltransferase type 11 [Nocardioides sp. JS614]
          Length = 249

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH 93
          +  ++ E +G   G   +++G GPG LT  L+   GA +V  ++    F    +      
Sbjct: 21 LADQLVELAGVRRGQRAVDVGCGPGVLTSRLVERLGAEQVRAVDPSPPFVAAARARCPGV 80

Query: 94 PNR 96
            R
Sbjct: 81 DVR 83


>gi|302039626|ref|YP_003799948.1| putative methyltransferase [Candidatus Nitrospira defluvii]
 gi|300607690|emb|CBK44023.1| putative Methyltransferase [Candidatus Nitrospira defluvii]
          Length = 273

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 49/118 (41%), Gaps = 11/118 (9%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILK 87
           + D    +++  ++G   G   +E+GAG G++ + L      + KV+ ++ + +F     
Sbjct: 26  IFDPGTQRRML-ATGLTTGWHCLEVGAGAGSIVRWLEQRVGPSGKVVAVDTNPRF----- 79

Query: 88  DISSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
            +     + +EI+Q D   +++    F  + +   +I    Y      +   +    W
Sbjct: 80  -LRGSGSSTIEILQGDICDMELPPAAFDLVHARYVMIHIADYQTAFERMLRCVKPGGW 136


>gi|242277639|ref|YP_002989768.1| tRNA (adenine-N(1)-)-methyltransferase [Desulfovibrio salexigens
           DSM 2638]
 gi|242120533|gb|ACS78229.1| tRNA (adenine-N(1)-)-methyltransferase [Desulfovibrio salexigens
           DSM 2638]
          Length = 308

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 20/130 (15%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEI- 99
            G   G  V+E G+G G LT  L        KV   EK  +F+ +++           + 
Sbjct: 90  LGIGPGTRVVESGSGSGGLTTALAYYVGDTGKVYTHEKRPEFYKLVRKNLEWAGLEHRVE 149

Query: 100 -----IQDDALKVDFEKFF-NISSPIRIIANLPYNI-----------GTRLLFNWISADT 142
                I+D  L  D +  F ++ +P   + ++P  +            T  + + + A  
Sbjct: 150 QFNLNIEDGFLASDCDALFLDVPNPWDYLHHIPKAVIPGAMCGFLLPTTNQVSDLLKAME 209

Query: 143 WPPFWESLTL 152
             PF E    
Sbjct: 210 SAPFEEQEVC 219


>gi|145225664|ref|YP_001136342.1| methyltransferase type 12 [Mycobacterium gilvum PYR-GCK]
 gi|145218150|gb|ABP47554.1| Methyltransferase type 12 [Mycobacterium gilvum PYR-GCK]
          Length = 348

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  +    AE +       V++IGAG G     L   G   V  +E   +F  IL++ + 
Sbjct: 125 DARVTTLAAEIADPT-TARVLDIGAGTGRNALALAKKG-HPVDAVELTPKFADILREEAY 182

Query: 92  QHPNRLEIIQDDALKV 107
           +H   + +I  D  + 
Sbjct: 183 KHLLGVRVIDRDIFET 198


>gi|217967777|ref|YP_002353283.1| Spermine synthase [Dictyoglomus turgidum DSM 6724]
 gi|217336876|gb|ACK42669.1| Spermine synthase [Dictyoglomus turgidum DSM 6724]
          Length = 285

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 19/128 (14%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQD 102
             V+ IGAG G   + LL      +  IE D       +         +    R+++I +
Sbjct: 79  QKVLVIGAGEGATLRELLKYENVNITAIEIDPNMVDFAEKYLWEWHQGAFRNERVKLIFE 138

Query: 103 D---ALKVDFEKF----FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           D    ++   EKF     ++  P        Y + T   +  I     P       ++ Q
Sbjct: 139 DGWNFVRDTCEKFDIVVLDLPEPYP--DTPAYRLYTEEFYKMIYHILNPSGI----VVTQ 192

Query: 156 KEVGERIT 163
            E  +   
Sbjct: 193 AETVQLGQ 200


>gi|159472140|ref|XP_001694209.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276872|gb|EDP02642.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 203

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 47/142 (33%), Gaps = 7/142 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
               G TV ++G G   L+     LGAR V+ ++ D     +  +   +    ++++  D
Sbjct: 45  DEFAGRTVADLGCGTAMLSIGAALLGARHVVGVDIDPDALEVAAENIQE----IDLVLAD 100

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
              +   +    +    +I N P+    + +     A  +     +      K       
Sbjct: 101 VRALPLTQPLLQARADTVIMNPPFGTKQKGVDMAFLAAAFSVSLHT-VYSLHKSSTRDFI 159

Query: 164 AQKNSPHYGRLS--VLTGWRTK 183
           A+      G  S  VL   R  
Sbjct: 160 AKTAKRDLGAASAEVLAQLRYD 181


>gi|63101235|gb|AAH95320.1| Zgc:110579 [Danio rerio]
          Length = 504

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 13  ILSHYKIIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           I   + + PKK      +G        ++K++ + +       V+++G+G G+LT+ L  
Sbjct: 67  IFRKH-VKPKKQHEIRRLG-------MLVKELCDQANCN---CVVDVGSGQGHLTRFLSF 115

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                V  IE D     +      Q    L      + K    +      P  ++  +  
Sbjct: 116 GLGLHVTGIEADPNLVSMATKFDRQLLQTLTKENQSSGKAHVLRSEPGPPPRHVVGWVNP 175

Query: 128 NIGTRLLFNWIS 139
                +    + 
Sbjct: 176 KASWDVFIQQLG 187


>gi|331005252|ref|ZP_08328644.1| hypothetical protein IMCC1989_1457 [gamma proteobacterium IMCC1989]
 gi|330420929|gb|EGG95203.1| hypothetical protein IMCC1989_1457 [gamma proteobacterium IMCC1989]
          Length = 202

 Score = 40.2 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 17/129 (13%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           ESS     + V+EIG G G     L       V  ++ D+  FP L              
Sbjct: 51  ESSPPKPNMRVLEIGCGWGIGGVFLAKNYDATVTALDADESVFPYLH------------Y 98

Query: 101 QDDALKVDFEKFFNISSPIRI--IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
             D   V+          + +  ++     I + + F     +   P  + +   +Q  V
Sbjct: 99  HADINGVNVTTVKERYENVSVDMLSEFDMVIASDICFW---DEMTKPLSDLIHRCYQAGV 155

Query: 159 GERITAQKN 167
              +     
Sbjct: 156 ERVVMTDPG 164


>gi|325201477|gb|ADY96931.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis M01-240149]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++A+        TV+EIG G G  T  LL   A +V+  + D       +  +  
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLASRVVSDDID----AEQQKRAKA 117

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             + L +   D ++ +     +  +P   +
Sbjct: 118 VLDGLSLENIDYVQNNGLTELSAGAPFDAV 147


>gi|308232126|ref|ZP_07415029.2| hypothetical protein TMAG_02982 [Mycobacterium tuberculosis
           SUMu001]
 gi|308369712|ref|ZP_07418803.2| hypothetical protein TMBG_00966 [Mycobacterium tuberculosis
           SUMu002]
 gi|308371009|ref|ZP_07423538.2| hypothetical protein TMCG_00522 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372227|ref|ZP_07427899.2| hypothetical protein TMDG_00902 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373407|ref|ZP_07432205.2| hypothetical protein TMEG_02789 [Mycobacterium tuberculosis
           SUMu005]
 gi|308374574|ref|ZP_07436601.2| hypothetical protein TMFG_01387 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375883|ref|ZP_07445412.2| hypothetical protein TMGG_00985 [Mycobacterium tuberculosis
           SUMu007]
 gi|308377008|ref|ZP_07440842.2| hypothetical protein TMHG_01617 [Mycobacterium tuberculosis
           SUMu008]
 gi|308378008|ref|ZP_07481236.2| hypothetical protein TMIG_01101 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379197|ref|ZP_07485465.2| hypothetical protein TMJG_00691 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380359|ref|ZP_07489679.2| hypothetical protein TMKG_00685 [Mycobacterium tuberculosis
           SUMu011]
 gi|308214938|gb|EFO74337.1| hypothetical protein TMAG_02982 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326699|gb|EFP15550.1| hypothetical protein TMBG_00966 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330127|gb|EFP18978.1| hypothetical protein TMCG_00522 [Mycobacterium tuberculosis
           SUMu003]
 gi|308333967|gb|EFP22818.1| hypothetical protein TMDG_00902 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337753|gb|EFP26604.1| hypothetical protein TMEG_02789 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341441|gb|EFP30292.1| hypothetical protein TMFG_01387 [Mycobacterium tuberculosis
           SUMu006]
 gi|308344937|gb|EFP33788.1| hypothetical protein TMGG_00985 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349248|gb|EFP38099.1| hypothetical protein TMHG_01617 [Mycobacterium tuberculosis
           SUMu008]
 gi|308353867|gb|EFP42718.1| hypothetical protein TMIG_01101 [Mycobacterium tuberculosis
           SUMu009]
 gi|308357813|gb|EFP46664.1| hypothetical protein TMJG_00691 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361758|gb|EFP50609.1| hypothetical protein TMKG_00685 [Mycobacterium tuberculosis
           SUMu011]
          Length = 330

 Score = 40.2 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E++       V+EIGAG G     L   G   V V+E   +F  I++  + +    + +I
Sbjct: 123 EAADPT-THRVLEIGAGTGRNALALARRG-HPVDVVEMTPKFADIIRSDAERDSLDVRVI 180

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             D      +        + +   +P    T+ L N      
Sbjct: 181 MRDVFST-MDDLRQDYQLMVLSEVVPDFRTTQQLRNLFELAA 221


>gi|307354923|ref|YP_003895974.1| type 12 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307158156|gb|ADN37536.1| Methyltransferase type 12 [Methanoplanus petrolearius DSM 11571]
          Length = 282

 Score = 40.2 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           +  I  +        ++++GAGPG +   L    A  V  +E       +L++  +++  
Sbjct: 52  VNWIVGNIPYTPDSIILDVGAGPGTIAIPLAGKAA-AVTAVEPSPAMAGVLREKIAENGI 110

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIA 123
             + +++     VD E   N    I   +
Sbjct: 111 ENITVVEKPWEDVDPESDLNPPYDIVFAS 139


>gi|326774364|ref|ZP_08233629.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326654697|gb|EGE39543.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 312

 Score = 40.2 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                  G  V+E+G G G  T +L T  G   V+ IE D       +    +      +
Sbjct: 114 RHLAPEPGERVLELGTGTGYTTALLATRTGPGTVVSIEVDSSIAEHARQNLHEIGLDPLV 173

Query: 100 IQDD 103
           +  D
Sbjct: 174 VTGD 177


>gi|215431369|ref|ZP_03429288.1| hypothetical protein MtubE_11943 [Mycobacterium tuberculosis
           EAS054]
 gi|289754531|ref|ZP_06513909.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289695118|gb|EFD62547.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
          Length = 348

 Score = 40.2 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E++       V+EIGAG G     L   G   V V+E   +F  I++  + +    + +I
Sbjct: 141 EAADPT-THRVLEIGAGTGRNALALARRG-HPVDVVEMTPKFADIIRSDAERDSLDVRVI 198

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             D      +        + +   +P    T+ L N      
Sbjct: 199 MRDVFST-MDDLRQDYQLMVLSEVVPDFRTTQQLRNLFELAA 239


>gi|46200065|ref|YP_005732.1| methyltransferase [Thermus thermophilus HB27]
 gi|46197693|gb|AAS82105.1| methyltransferase [Thermus thermophilus HB27]
          Length = 263

 Score = 40.2 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 34  NILKKIAESSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            I   +A +        V +E+G G G +   L+  G R  I ++ D     + +   + 
Sbjct: 25  QIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRY-IALDADAAMLEVFRQKIAG 83

Query: 93  HPNRLEIIQDDALKVDFEK 111
              +++++Q DA  +    
Sbjct: 84  VDRKVQVVQADARAIPLPD 102


>gi|86147399|ref|ZP_01065712.1| hypothetical protein MED222_01052 [Vibrio sp. MED222]
 gi|85834827|gb|EAQ52972.1| hypothetical protein MED222_01052 [Vibrio sp. MED222]
          Length = 242

 Score = 40.2 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEI 99
                   V++IG G G L  M         +  I+ DQ           Q P  +R+ +
Sbjct: 38  INLAPESLVLDIGTGTGLLALMAAQRFEDASISAIDIDQHAIDAATVNIEQSPWQDRISL 97

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
             D  L  DF + F+      II N PY   
Sbjct: 98  HHDSVLTTDFSQQFD-----AIICNPPYFNS 123


>gi|292622376|ref|XP_002664970.1| PREDICTED: UPF0431 protein C1orf66 homolog isoform 2 [Danio rerio]
          Length = 574

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 13  ILSHYKIIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           I   + + PKK      +G        ++K++ + +       V+++G+G G+LT+ L  
Sbjct: 127 IFRKH-VKPKKQHEIRRLG-------MLVKELCDQANCN---CVVDVGSGQGHLTRFLSF 175

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                V  IE D     +      Q    L      + K    +      P  ++  +  
Sbjct: 176 GLGLHVTGIEADPNLVSMATKFDRQLLQTLTKENQSSGKAHVLRSEPGPPPRHVVGWVNP 235

Query: 128 NIGTRLLFNWIS 139
                +    + 
Sbjct: 236 KASWDVFIQQLG 247


>gi|111222285|ref|YP_713079.1| SAM-dependent methyltransferase involved in tRNA-Met maturation
           [Frankia alni ACN14a]
 gi|111149817|emb|CAJ61511.1| SAM-dependent methyltransferase involved in tRNA-Met maturation
           [Frankia alni ACN14a]
          Length = 318

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD-----IS 90
           +I   +    G  V+E G G G L+  LL     A ++I  E+ + F  I +        
Sbjct: 103 QIVTYADIFPGARVLEAGVGSGALSCSLLRTIGDAGRLISYERREDFAAIAQRNIETFFG 162

Query: 91  SQHPNRLEIIQDD 103
             HP    +I  D
Sbjct: 163 GPHPAH-TVIVGD 174


>gi|74317065|ref|YP_314805.1| cyclopropane fatty acyl phospholipid synthase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056560|gb|AAZ97000.1| cyclopropane fatty acyl phospholipid synthase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 389

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I        G  ++EIG G G L +        +V+ I   ++   + ++     P 
Sbjct: 162 LDMICRKLELKRGEVLLEIGCGWGGLARFAAERYGVEVVGITVSKEQQALARERCKGLPV 221

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            +E+       +D+ +       I  +   
Sbjct: 222 AIEL-------MDYRELSRKFDKIVSVGMF 244


>gi|59800488|ref|YP_207200.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           gonorrhoeae FA 1090]
 gi|239998150|ref|ZP_04718074.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           gonorrhoeae 35/02]
 gi|240013332|ref|ZP_04720245.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           gonorrhoeae DGI18]
 gi|240112120|ref|ZP_04726610.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           gonorrhoeae MS11]
 gi|240120405|ref|ZP_04733367.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           gonorrhoeae PID24-1]
 gi|240124897|ref|ZP_04737783.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           gonorrhoeae SK-92-679]
 gi|240127409|ref|ZP_04740070.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|254492929|ref|ZP_05106100.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268594002|ref|ZP_06128169.1| protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268598181|ref|ZP_06132348.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268683479|ref|ZP_06150341.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268685784|ref|ZP_06152646.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|293397781|ref|ZP_06641987.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Neisseria
           gonorrhoeae F62]
 gi|59717383|gb|AAW88788.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           gonorrhoeae FA 1090]
 gi|226511969|gb|EEH61314.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268547391|gb|EEZ42809.1| protein-L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268582312|gb|EEZ46988.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268623763|gb|EEZ56163.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626068|gb|EEZ58468.1| L-isoaspartate O-methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291611727|gb|EFF40796.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Neisseria
           gonorrhoeae F62]
 gi|317163442|gb|ADV06983.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++A+        TV+EIG G G  T  LL   A +V+  + D       +  +  
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGRVVSDDID----AERQKRAKA 117

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             + L +   D ++ +     +  +P   +
Sbjct: 118 VLDGLSLENIDYVQNNGLTELSAGAPFDAV 147


>gi|149914229|ref|ZP_01902760.1| magnesium protoporphyrin IX methyltransferase [Roseobacter sp.
           AzwK-3b]
 gi|149811748|gb|EDM71581.1| magnesium protoporphyrin IX methyltransferase [Roseobacter sp.
           AzwK-3b]
          Length = 226

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEI 99
                L G  V++ G G G +T  L   GA  V+ ++       I +         R+  
Sbjct: 52  RLPDDLTGARVLDAGCGAGQMTAELAARGAD-VVAVDISPSLVAIARKRLPIDLSARVSF 110

Query: 100 IQDDAL 105
              D L
Sbjct: 111 HSGDML 116


>gi|147904617|ref|NP_001082903.1| ribosomal RNA adenine dimethylase domain containing 1 [Danio rerio]
 gi|126635168|emb|CAM56287.1| novel protein (zgc:110579) [Danio rerio]
          Length = 574

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 13  ILSHYKIIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           I   + + PKK      +G        ++K++ + +       V+++G+G G+LT+ L  
Sbjct: 127 IFRKH-VKPKKQHEIRRLG-------MLVKELCDQANCN---CVVDVGSGQGHLTRFLSF 175

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                V  IE D     +      Q    L      + K    +      P  ++  +  
Sbjct: 176 GLGLHVTGIEADPNLVSMATKFDRQLLQTLTKENQSSGKAHVLRSEPGPPPRHVVGWVNP 235

Query: 128 NIGTRLLFNWIS 139
                +    + 
Sbjct: 236 KASWDVFIQQLG 247


>gi|52548943|gb|AAU82792.1| tRNA(1-methyladenosine) methyltransferase [uncultured archaeon
           GZfos1C11]
          Length = 293

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH 93
           +  I   +    G  V+E G G G LT  LL    R  KVI  E+ ++F  I        
Sbjct: 110 IGAILMLADIFPGANVLEAGTGSGALTIALLRAVGRDGKVISYERRKEFAAIANSNIETF 169

Query: 94  PNRLEI 99
             ++ I
Sbjct: 170 FEQVGI 175


>gi|295701423|ref|YP_003610424.1| methyltransferase type 11 [Burkholderia sp. CCGE1002]
 gi|295441746|gb|ADG20913.1| Methyltransferase type 11 [Burkholderia sp. CCGE1002]
          Length = 205

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +++  S+      TV+E+GAG G L   L   G R+V+ +E D +   + +  ++Q    
Sbjct: 27  ERVVGSAE----GTVLEVGAGSG-LNLPLYGAGVREVLALEPDPRLLEMARRNANQARRP 81

Query: 97  LEIIQDDA 104
           +  +   A
Sbjct: 82  VTFLDASA 89


>gi|262373706|ref|ZP_06066984.1| methyltransferase [Acinetobacter junii SH205]
 gi|262311459|gb|EEY92545.1| methyltransferase [Acinetobacter junii SH205]
          Length = 274

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             +  +IAE+        V+++G G G  L   +     R++  +E   +     K I  
Sbjct: 49  QKLADQIAEAVQLKGSDRVLDLGCGQGASLLHWIEQYHVRQLSAVELQAECV---KRIQH 105

Query: 92  QHPNRLEIIQDDALKVDFEKFFN 114
           + P ++EI     L +      N
Sbjct: 106 ELP-QVEIYCQSFLDLQQPVILN 127


>gi|255263687|ref|ZP_05343029.1| protein-L-isoaspartate [Thalassiobium sp. R2A62]
 gi|255106022|gb|EET48696.1| protein-L-isoaspartate [Thalassiobium sp. R2A62]
          Length = 216

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           LL+   L KI ++        V+++G G G  T +L  +    V+ +E 
Sbjct: 61  LLEARTLAKILDALALETEDVVLDLGCGLGYSTAVLAHM-VHAVVAVED 108


>gi|292622374|ref|XP_002664969.1| PREDICTED: UPF0431 protein C1orf66 homolog isoform 1 [Danio rerio]
 gi|122891153|emb|CAM12970.1| novel protein (zgc:110579) [Danio rerio]
          Length = 564

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 13  ILSHYKIIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           I   + + PKK      +G        ++K++ + +       V+++G+G G+LT+ L  
Sbjct: 127 IFRKH-VKPKKQHEIRRLG-------MLVKELCDQANCN---CVVDVGSGQGHLTRFLSF 175

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                V  IE D     +      Q    L      + K    +      P  ++  +  
Sbjct: 176 GLGLHVTGIEADPNLVSMATKFDRQLLQTLTKENQSSGKAHVLRSEPGPPPRHVVGWVNP 235

Query: 128 NIGTRLLFNWIS 139
                +    + 
Sbjct: 236 KASWDVFIQQLG 247


>gi|73671001|ref|YP_307016.1| hypothetical protein Mbar_A3567 [Methanosarcina barkeri str.
           Fusaro]
 gi|72398163|gb|AAZ72436.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 284

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +G   ++IG GPG LT  L  LGA +V  ++        LKD   +    ++I++ 
Sbjct: 68  EGSRALDIGCGPGTLTLPLSKLGA-EVTALDISSGMLDRLKDSVKKESLPVDIVEC 122


>gi|330994781|ref|ZP_08318703.1| Dethiobiotin synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329758042|gb|EGG74564.1| Dethiobiotin synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 468

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH 93
           + ++I    G      ++EIG G G LT+ L  L  R  +   +   +    L  ++ Q 
Sbjct: 31  LARRIGRQYGQEAPARILEIGCGTGLLTRELRRLFPRAHITATDIAPRM---LDRMARQM 87

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           P    +     L V   +  +   P  +I +
Sbjct: 88  PGDTHLR----LHVMDGQAPDAQGPFDLICS 114


>gi|297529759|ref|YP_003671034.1| methyltransferase type 11 [Geobacillus sp. C56-T3]
 gi|297253011|gb|ADI26457.1| Methyltransferase type 11 [Geobacillus sp. C56-T3]
          Length = 189

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
               T++++G+G G  T  L      KV  ++   +   +LK  + Q  
Sbjct: 34 VKPNDTIVDLGSGNGYFTIPLAQATNGKVYAVDVQPEMIQLLKKRAQQFA 83


>gi|284050546|ref|ZP_06380756.1| hypothetical protein AplaP_03617 [Arthrospira platensis str.
           Paraca]
          Length = 306

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +         ++++GAG G  T  L   G   V  +E   +F  I+   + ++  R+ +
Sbjct: 99  VKEFNPPSSAPILDVGAGVGRNTLALARRG-HPVDAVELTPEFAQIIAKEAQENQLRVRV 157

Query: 100 IQDDAL 105
           IQ + L
Sbjct: 158 IQSNIL 163


>gi|225869590|ref|YP_002745537.1| hypothetical protein SEQ_0117 [Streptococcus equi subsp. equi 4047]
 gi|225698994|emb|CAW92070.1| conserved hypothetical protein [Streptococcus equi subsp. equi
           4047]
          Length = 317

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNR 96
           I E+  S + + V+EIG+G GNL Q +L    + +  + IE D     +   I+    + 
Sbjct: 101 ILETLSSQESLDVLEIGSGTGNLAQTILNHSHKSIDYLGIELDDLLIDLSASIAEIMGSS 160

Query: 97  LEIIQDDALK 106
            + IQ+DA++
Sbjct: 161 AQFIQEDAIR 170


>gi|242310509|ref|ZP_04809664.1| ribosomal RNA adenine dimethylase [Helicobacter pullorum MIT
           98-5489]
 gi|239522907|gb|EEQ62773.1| ribosomal RNA adenine dimethylase [Helicobacter pullorum MIT
           98-5489]
          Length = 184

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEII 100
            G  +   + EIG G G  TQ +L L  +  +   IE +  F   L++        LE+ 
Sbjct: 30  IGIQNAKYIAEIGPGLGVFTQKILNLKQKDARFFAIEINPYFAKKLQEKFE----NLEVE 85

Query: 101 QDDALKV-DFEKFFNISSPIRIIANLPYNI 129
             +A ++    +   I+    +++ +P+++
Sbjct: 86  NKNANQILSIMQNKQIAQLDVVVSGIPWSL 115


>gi|260826287|ref|XP_002608097.1| hypothetical protein BRAFLDRAFT_91425 [Branchiostoma floridae]
 gi|229293447|gb|EEN64107.1| hypothetical protein BRAFLDRAFT_91425 [Branchiostoma floridae]
          Length = 885

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G +V+++G G G  TQ +   G + V+ I+K   F    K+ +        +   D  +
Sbjct: 32  RGDSVLDVGCGTGRTTQHIAHQGVKSVVGIDKSPDFISYTKENAEDTNVSFSV--ADIQR 89

Query: 107 V 107
            
Sbjct: 90  F 90


>gi|159490686|ref|XP_001703304.1| protein arginine N-methyltransferase [Chlamydomonas reinhardtii]
 gi|158280228|gb|EDP05986.1| protein arginine N-methyltransferase [Chlamydomonas reinhardtii]
          Length = 345

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
             I  ++       V++IG G G L+      GA+ V  IE           I       
Sbjct: 52  NAILNNAYLFKDKIVLDIGCGTGILSLFSAKAGAKHVYGIEC-STIAEQATQIVKDNKFD 110

Query: 95  NRLEIIQD 102
           +R+ II+ 
Sbjct: 111 DRVTIIKG 118


>gi|153003698|ref|YP_001378023.1| methyltransferase small [Anaeromyxobacter sp. Fw109-5]
 gi|152027271|gb|ABS25039.1| methyltransferase small [Anaeromyxobacter sp. Fw109-5]
          Length = 414

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 36  LKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ- 92
           +  +A ++    + G  VIE+G G G L  +L   GAR VI  + +       ++ +++ 
Sbjct: 220 VDLVASAAAEWPVAGKRVIEVGTGTGVLALVLARAGAR-VIATDVEPAAVACARENAARL 278

Query: 93  -HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
               R+E+++ D           +     +++N P+
Sbjct: 279 GLAERVEVVRADLFP------DGVGPADLVVSNPPW 308


>gi|28207757|gb|AAO32621.1| CR061 protein [Chlamydomonas reinhardtii]
          Length = 342

 Score = 40.2 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
             I  ++       V++IG G G L+      GA+ V  IE           I       
Sbjct: 52  NAILNNAYLFKDKIVLDIGCGTGILSLFSAKAGAKHVYGIEC-STIAEQATQIVKDNKFD 110

Query: 95  NRLEIIQD 102
           +R+ II+ 
Sbjct: 111 DRVTIIKG 118


>gi|304391385|ref|ZP_07373327.1| protein-L-isoaspartate O-methyltransferase 1 [Ahrensia sp. R2A130]
 gi|303295614|gb|EFL89972.1| protein-L-isoaspartate O-methyltransferase 1 [Ahrensia sp. R2A130]
          Length = 220

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
            K+ + +       V++IG   G  T  +L+     V+ +E D+       +  I     
Sbjct: 71  AKLVQLAEIKPDSIVLDIGCATGYST-AILSRLCNSVVAVESDEHLAQRAGESLIEGGFD 129

Query: 95  NRLEIIQD 102
           N + ++  
Sbjct: 130 NAV-VVHG 136


>gi|326789431|ref|YP_004307252.1| methyltransferase type 11 [Clostridium lentocellum DSM 5427]
 gi|326540195|gb|ADZ82054.1| Methyltransferase type 11 [Clostridium lentocellum DSM 5427]
          Length = 205

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            TV+++G G G+L   +L     +V  +  D     +LK    + P R+E+IQ DA
Sbjct: 45  ETVLDVGCGTGSLLYEILDRKP-QVKAVGVD-FSEEMLKVARDKLPKRVELIQGDA 98


>gi|257357706|dbj|BAI23332.1| putative methyltransferase [Streptomyces griseus]
          Length = 255

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +        TV+++ AG G LT+ L+   A  VI +E D +    L+ 
Sbjct: 33 VDWLVPDGCATVVDLAAGTGALTRSLVHRVAH-VIAVEPDPRMLGALRR 80


>gi|261378215|ref|ZP_05982788.1| periplasmic glucans biosynthesis protein, MdoG [Neisseria cinerea
           ATCC 14685]
 gi|269145687|gb|EEZ72105.1| periplasmic glucans biosynthesis protein, MdoG [Neisseria cinerea
           ATCC 14685]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++A+        TV+EIG G G  T  LL   A KV+  + D       +  +  
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGKVVSDDLD----AEQQKRAKA 117

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             + L +   D ++ +     +  +P   +
Sbjct: 118 VLDGLSLENIDYVQNNGLTELSAGAPFDAV 147


>gi|195580604|ref|XP_002080125.1| GD21650 [Drosophila simulans]
 gi|194192134|gb|EDX05710.1| GD21650 [Drosophila simulans]
          Length = 288

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             ++  L G +++E+G G G LT+ L  LGAR V  I+  ++   + ++        L
Sbjct: 87  VNTTKVLLGQSILEVGCGGGLLTEHLARLGAR-VTGIDLGEKLIEVAREHLKCSSPEL 143


>gi|195352038|ref|XP_002042522.1| GM23272 [Drosophila sechellia]
 gi|194124391|gb|EDW46434.1| GM23272 [Drosophila sechellia]
          Length = 259

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             ++  L G +++E+G G G LT+ L  LGAR V  I+  ++   + ++        L
Sbjct: 87  VNTTKVLLGQSILEVGCGGGLLTEHLARLGAR-VTGIDLGEKLIEVAREHLKCSSPEL 143


>gi|329905043|ref|ZP_08273978.1| methylase of polypeptide chain release factor [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547779|gb|EGF32552.1| methylase of polypeptide chain release factor [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 379

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA-LKVDFEKF 112
           IG G G L  +L   G R+VI  ++D +     ++        +  +  DA +++     
Sbjct: 202 IGTGTGVLAAVLAQRGVRRVIATDQDPRALTCAQE-------NITRLGMDATIELLCADL 254

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172
           F       I+ N P+        + I    + P    L             A +      
Sbjct: 255 FPPGRAGLIVCNPPWLPARP--SSPIEYAMYDPESRMLRGFLDGLAAHLEEAGEGWLILS 312

Query: 173 RLSVLTGWRTKATMM 187
            L+   G RT+A ++
Sbjct: 313 DLAEHLGLRTRAELL 327


>gi|327482620|gb|AEA85930.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 333

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEI 99
           ++       T +E+G G G+    L    AR V+ ++       + +    Q     +E+
Sbjct: 159 DALNFDAEATALEVGPGDGSFLPELARRFAR-VVALDNSPAMLDLARAHCEQTGLGNVEL 217

Query: 100 IQDDALKVDFEK 111
              DAL  D   
Sbjct: 218 RLADALHDDCPA 229


>gi|313888904|ref|ZP_07822564.1| ribosomal protein L11 methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845077|gb|EFR32478.1| ribosomal protein L11 methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 301

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQD 102
                 + +IG G G L    L LGA++ + ++ D +      + +  +   ++++I + 
Sbjct: 161 VKKDDEIFDIGCGSGILAIAGLKLGAKRALAVDIDDKCIDASHENADLNNLEDKMDIKKG 220

Query: 103 DALKV 107
           + L V
Sbjct: 221 NLLDV 225


>gi|304404178|ref|ZP_07385840.1| Methyltransferase type 11 [Paenibacillus curdlanolyticus YK9]
 gi|304347156|gb|EFM12988.1| Methyltransferase type 11 [Paenibacillus curdlanolyticus YK9]
          Length = 764

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            ++  + G+ V++   G G  T+ML   GA  V  ++ D +    L      HP  L  +
Sbjct: 547 AAAEYVHGLHVLDAACGAGYGTRMLHDAGAASVTGVDIDPESVE-LAQRDYGHPGML-FM 604

Query: 101 QDDAL 105
           Q D L
Sbjct: 605 QGDVL 609


>gi|301770295|ref|XP_002920605.1| PREDICTED: hemK methyltransferase family member 1-like [Ailuropoda
           melanoleuca]
          Length = 358

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           + G+  G  ++E+G G G +   LL  L   +VI ++K +    + ++ + +    +R++
Sbjct: 154 AMGAQGGPLILEVGCGSGAIALSLLSQLPQSRVIAVDKGEAAICLTQENAQRLQLLDRIQ 213

Query: 99  IIQDDA-LKVDFEKFFNISSPIRIIANLPY 127
           I+  D  L+  +           +++N PY
Sbjct: 214 IVPLDVTLEGSWAHLLTWGPMDLVVSNPPY 243


>gi|296283767|ref|ZP_06861765.1| cyclopropane-fatty-acyl-phospholipid synthase [Citromicrobium
           bathyomarinum JL354]
          Length = 418

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 19/115 (16%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  I +      G T++EIG G G L +     GA+   +          L +       
Sbjct: 195 IDAILDRVALKSGDTLLEIGCGWGTLARAAADRGAKVDAI---------SLSEEQLAWAR 245

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           R  +     L  D+                   I +  +   +  + WP F + +
Sbjct: 246 RQSVGDARFLYQDYRDTNGQYD----------AIASVEMVEALGREYWPTFMDCV 290


>gi|291295122|ref|YP_003506520.1| Methyltransferase type 11 [Meiothermus ruber DSM 1279]
 gi|290470081|gb|ADD27500.1| Methyltransferase type 11 [Meiothermus ruber DSM 1279]
          Length = 264

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 38  KIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           +IA +              +EIGAG G +   ++  G R  I ++ +     +L+   + 
Sbjct: 25  RIATALTAPVEKLFRDPLFLEIGAGTGRIAVPIIARGYRY-IALDNNPAMLEVLRQKVAG 83

Query: 93  HPNRLEIIQDDALKVDFEK 111
              +  +++ DA ++ FE+
Sbjct: 84  VARKARLVEADARELPFER 102


>gi|254819650|ref|ZP_05224651.1| hypothetical protein MintA_06994 [Mycobacterium intracellulare ATCC
           13950]
          Length = 281

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I        G  V+E GAG G LT  LL       +V+  E+        +   S  
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPGGRVVSYEQRADHAEHAQRNVSVF 147

Query: 94  -----PNRLEIIQDDA 104
                P+  E+I  D 
Sbjct: 148 AGGEPPDNWELIVSDV 163


>gi|228476084|ref|ZP_04060792.1| ribosomal protein L11 methyltransferase [Staphylococcus hominis
           SK119]
 gi|314936301|ref|ZP_07843648.1| ribosomal protein L11 methyltransferase [Staphylococcus hominis
           subsp. hominis C80]
 gi|228269907|gb|EEK11387.1| ribosomal protein L11 methyltransferase [Staphylococcus hominis
           SK119]
 gi|313654920|gb|EFS18665.1| ribosomal protein L11 methyltransferase [Staphylococcus hominis
           subsp. hominis C80]
          Length = 312

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                +VI++G G G L+     +G +++  ++ D+    + K+   ++   N +E I  
Sbjct: 171 VTPDSSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVGVAKENFRKNHCENDIEAIPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKEENEKF 240


>gi|303282445|ref|XP_003060514.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457985|gb|EEH55283.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 369

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 59/213 (27%), Gaps = 37/213 (17%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-- 93
           L  I   +  L G  V+++G G G L       GARKV  +E         + I   +  
Sbjct: 39  LAAIEAHADELRGKVVLDVGCGTGILAMFAARAGARKVYAVEA-SGVAKHARRIVKDNGL 97

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA---DTWPPFWESL 150
              +E+I+        E         ++   L   +G  LLF  +     D    F +  
Sbjct: 98  DGVVEVIRG-----RMEDIGEDEIVEKVDCVLSEWMGYALLFESMLPSVIDARDRFMKPG 152

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA-------------TMMFDISPHVFFP 197
            L+        + A  +   Y       G+                     D  P    P
Sbjct: 153 GLVLPNVATIHVAALSDMKRYDD---AVGFWDDVYGFDFSSLAARTRRDWSDDPPVSTVP 209

Query: 198 SPKVTS----------TVIHFIPHLNPIPCCLE 220
             +V S            + F     P     E
Sbjct: 210 RERVVSDAAEVARIDCATVRFEDLFEPTDGAFE 242


>gi|323359476|ref|YP_004225872.1| SAM-dependent methyltransferase [Microbacterium testaceum
          StLB037]
 gi|323275847|dbj|BAJ75992.1| SAM-dependent methyltransferase [Microbacterium testaceum
          StLB037]
          Length = 249

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
               + V ++GAG G LT+ ++ LGA  V+ ++ D      L++ +   P  +
Sbjct: 38 EPGRALRVADVGAGTGKLTRAVVELGAD-VVAVDPDADMLATLRENARGVPTFV 90


>gi|317406340|gb|EFV86571.1| cyclopropane fatty acyl phospholipid synthase [Achromobacter
           xylosoxidans C54]
          Length = 392

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I        G T+++IG G G L +        KV  +   ++   + ++     P 
Sbjct: 165 LDMICRKLQLKPGETLLDIGCGWGGLAKFAAERYGVKVTGVTVSKEQLALAQERVRGLP- 223

Query: 96  RLEIIQDD 103
            +E++  D
Sbjct: 224 -VELLLQD 230


>gi|315453006|ref|YP_004073276.1| N-6 adenine methyltransferase [Helicobacter felis ATCC 49179]
 gi|315132058|emb|CBY82686.1| N-6 adenine methyltransferase [Helicobacter felis ATCC 49179]
          Length = 194

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 13/120 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           LN+L+ I  +S        +E+  G G++    L+ GA++ +  E+D++ F +L++    
Sbjct: 41  LNVLRPIIATSAF------VEVFGGSGSVGLEALSCGAQEALFFEQDREVFTLLQENIRL 94

Query: 93  HPNRL------EIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWISADTWPP 145
              RL      + IQ D+LK+  +   ++S + I +  + P+N+  +  F  +     PP
Sbjct: 95  FQKRLKQPLKAQAIQGDSLKLLPQYLHSLSAAQIILYLDPPFNMPLQACFVCLENVQIPP 154


>gi|281338315|gb|EFB13899.1| hypothetical protein PANDA_009308 [Ailuropoda melanoleuca]
          Length = 338

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           + G+  G  ++E+G G G +   LL  L   +VI ++K +    + ++ + +    +R++
Sbjct: 154 AMGAQGGPLILEVGCGSGAIALSLLSQLPQSRVIAVDKGEAAICLTQENAQRLQLLDRIQ 213

Query: 99  IIQDDA-LKVDFEKFFNISSPIRIIANLPY 127
           I+  D  L+  +           +++N PY
Sbjct: 214 IVPLDVTLEGSWAHLLTWGPMDLVVSNPPY 243


>gi|302527195|ref|ZP_07279537.1| tRNA (adenine-N(1)-)-methyltransferase [Streptomyces sp. AA4]
 gi|302436090|gb|EFL07906.1| tRNA (adenine-N(1)-)-methyltransferase [Streptomyces sp. AA4]
          Length = 276

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILK----DI 89
             +I        G  V+E GAG G LT  LL     A +V   E         +      
Sbjct: 88  AAQIVMWGDIFPGARVLEAGAGSGALTCSLLRAVGPAGQVFSYEIRDDHAEHAERNVVKF 147

Query: 90  SSQHPNRLEIIQDD 103
             + P+   +   D
Sbjct: 148 FGEKPDNWTLTVAD 161


>gi|254804293|ref|YP_003082514.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis alpha14]
 gi|254667835|emb|CBA03840.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis alpha14]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             ++ ++A+        TV+EIG G G  T  LL   A +V+  + D +
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGRVVSDDIDAE 110


>gi|291303741|ref|YP_003515019.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
 gi|290572961|gb|ADD45926.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
          Length = 263

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + G      ++E+GAG G LT+ LL  G  +V  +E D +    L
Sbjct: 42 SAFGETPLD-IVELGAGTGLLTRGLLAAG-HRVTAVEPDDKMLDRL 85


>gi|122891154|emb|CAM12971.1| novel protein (zgc:110579) [Danio rerio]
          Length = 505

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 13  ILSHYKIIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           I   + + PKK      +G        ++K++ + +       V+++G+G G+LT+ L  
Sbjct: 68  IFRKH-VKPKKQHEIRRLG-------MLVKELCDQANCN---CVVDVGSGQGHLTRFLSF 116

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                V  IE D     +      Q    L      + K    +      P  ++  +  
Sbjct: 117 GLGLHVTGIEADPNLVSMATKFDRQLLQTLTKENQSSGKAHVLRSEPGPPPRHVVGWVNP 176

Query: 128 NIGTRLLFNWIS 139
                +    + 
Sbjct: 177 KASWDVFIQQLG 188


>gi|148554564|ref|YP_001262146.1| type 11 methyltransferase [Sphingomonas wittichii RW1]
 gi|148499754|gb|ABQ68008.1| Methyltransferase type 11 [Sphingomonas wittichii RW1]
          Length = 281

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I + I +++    G  V+++  G  N   +L      KV  IE   +   + ++     P
Sbjct: 43  IAQMIVDTAAIKPGEAVLDV--GARNNAALLAAQAGAKVTAIEVSPRLLDVARERLKDFP 100

Query: 95  N-RLEIIQDDALKVDFEK 111
           + R E+   D  K+ F  
Sbjct: 101 DTRFEL--ADVAKLPFPD 116


>gi|19571715|emb|CAD27648.1| AtaP5 protein [Saccharothrix mutabilis subsp. capreolus]
          Length = 228

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 10/80 (12%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDF 109
           +EIG G G +       GA +V  ++ + +      + +  H   +++ ++  D      
Sbjct: 65  LEIGCGSGVIAVTAALSGAARVTAVDINDRAVANTAENARFHGVEDKVTVLHGD------ 118

Query: 110 EKFFNISSPIRIIANLPYNI 129
              F    P      + +N+
Sbjct: 119 --LFEAVPPTDRFDVIFWNV 136


>gi|146296761|ref|YP_001180532.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166223403|sp|A4XKA6|PRMA_CALS8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|145410337|gb|ABP67341.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 302

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              G  VI+IG G G L      LGA +V+ ++ D     + ++ ++ +   +EI Q+D
Sbjct: 166 IKPGFDVIDIGTGSGILAIAAKKLGANRVLAVDIDDVAVKVARENAALNNVEIEIKQND 224


>gi|308071056|ref|YP_003872661.1| phospholipid N-methyltransferase [Paenibacillus polymyxa E681]
 gi|305860335|gb|ADM72123.1| Phospholipid N-methyltransferase [Paenibacillus polymyxa E681]
          Length = 185

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query: 5   NKSHSLKTILSHYK----IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           N  H ++  + H +    +IP             + K+IA          +IE GAG G 
Sbjct: 2   NAIHFIREYIRHPRSVGAVIPS---------SRQLAKQIATPIYFDKASCIIEYGAGTGV 52

Query: 61  LTQMLL--TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISS 117
            TQ L+        ++VIE ++ F+  L+     H  R+ II   A  V  + + + +  
Sbjct: 53  FTQELILNKRPETLLLVIEANESFYKTLQSKY-GHLERVHIIHGSAEHVAQYIRQYEVPK 111

Query: 118 PIRIIANLPYNIGTRLLFNWI 138
              +++ LP+      L + I
Sbjct: 112 VDYVVSGLPFTSLPAALSSLI 132


>gi|299530964|ref|ZP_07044377.1| tRNA (guanine-N(7)-)-methyltransferase [Comamonas testosteroni S44]
 gi|298720921|gb|EFI61865.1| tRNA (guanine-N(7)-)-methyltransferase [Comamonas testosteroni S44]
          Length = 244

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 14/141 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRL 97
           A ++    G  ++EIG G G  T  +  +      +     +     +LK I  Q    +
Sbjct: 64  AAAAYGRGGKLILEIGFGMGEATAHIARVRPDDNFLCCEVHEPGVGALLKRIGEQEIENI 123

Query: 98  EIIQDDALKV----------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            I+Q DA++V          D    F      +   N    I + L+    +      + 
Sbjct: 124 RILQHDAVEVIDNMLPEASIDGVHIFFPDPWHKKKHNKRRLIQSPLITKLAARIKPGGYI 183

Query: 148 ESLT--LLFQKEVGERITAQK 166
              T    +  ++ E + A+ 
Sbjct: 184 HCATDWEPYAVQILEVLNAEP 204


>gi|296876352|ref|ZP_06900404.1| methyltransferase [Streptococcus parasanguinis ATCC 15912]
 gi|296432642|gb|EFH18437.1| methyltransferase [Streptococcus parasanguinis ATCC 15912]
          Length = 197

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 18/144 (12%)

Query: 25  MGQ--NFLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ  NF  D  +  KK+ +        +    +G +V+++G G G +   L       V
Sbjct: 24  LGQKMNFYTDAGVFSKKMIDYGSQVLLSTLDFQEGESVLDVGCGYGPIGLSLTKAQGVAV 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +++   + K  +S++    +I   D  +   E  F+      +I+N P   G ++
Sbjct: 84  TMVDVNERALDLAKKNASRNGVEAQIFSSDVYEA-VEGVFD-----HVISNPPIRAGKKV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK 156
           +   I+           LT++ QK
Sbjct: 138 VHQVITGSFEHLKPGGDLTIVIQK 161


>gi|225867720|ref|YP_002743668.1| hypothetical protein SZO_01060 [Streptococcus equi subsp.
           zooepidemicus]
 gi|225700996|emb|CAW97745.1| conserved hypothetical protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 317

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNR 96
           I E+  S + + V+EIG+G GNL   +L     A   + +E D     +   I+    + 
Sbjct: 101 ILETLSSQESLDVLEIGSGTGNLAHTILNHSHQAIHYLGVELDDLLIDLSASIAEIMGSS 160

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            + IQ+DA++    +    S    II++LP
Sbjct: 161 AQFIQEDAVR---PQLLKESD--MIISDLP 185


>gi|260799684|ref|XP_002594823.1| hypothetical protein BRAFLDRAFT_239031 [Branchiostoma floridae]
 gi|229280060|gb|EEN50834.1| hypothetical protein BRAFLDRAFT_239031 [Branchiostoma floridae]
          Length = 250

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + + I +    +   +V+++G+G G         GAR+V+  + D      +K  +  + 
Sbjct: 86  LTRYILDHGSVVKDKSVLDVGSGCGASAIAAAMRGARRVLANDIDPVAATAVKMNAKLNC 145

Query: 95  NRLEI 99
             LEI
Sbjct: 146 VNLEI 150


>gi|170754533|ref|YP_001780570.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum B1 str. Okra]
 gi|169119745|gb|ACA43581.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum B1 str. Okra]
          Length = 191

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS 90
           D+ IL          +   V+++GAG G+++     +  + +V  IEKD++   I+K   
Sbjct: 20  DIRILS--ISKMNLEENSKVLDVGAGTGSVSIQAARICKKGRVFAIEKDEEALDIIKKNK 77

Query: 91  SQHP-NRLEIIQDDALKVDFE 110
            +     L+II+ +AL+V+  
Sbjct: 78  EKFNCENLKIIKGEALEVEES 98


>gi|126436471|ref|YP_001072162.1| methyltransferase type 11 [Mycobacterium sp. JLS]
 gi|126436478|ref|YP_001072169.1| methyltransferase type 11 [Mycobacterium sp. JLS]
 gi|126236271|gb|ABN99671.1| Methyltransferase type 11 [Mycobacterium sp. JLS]
 gi|126236278|gb|ABN99678.1| Methyltransferase type 11 [Mycobacterium sp. JLS]
          Length = 198

 Score = 40.2 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 42  SSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           + G L G  V+E+G G G     +L  L A +V   + D     + +      P  L + 
Sbjct: 32  AGGDLAGQDVLEVGCGRGVGAEVILDRLHANRVTAFDLDDSMVELARRRLHNRPVSLSV- 90

Query: 101 QDDALKVDFEK 111
             DA ++    
Sbjct: 91  -GDACEIKQPA 100


>gi|291452857|ref|ZP_06592247.1| O-methyltransferase [Streptomyces albus J1074]
 gi|291355806|gb|EFE82708.1| O-methyltransferase [Streptomyces albus J1074]
          Length = 421

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQ 80
             ++ ++ ES    +G  V+EIG G G  T +L    G   V  ++ D 
Sbjct: 130 PALVLRMLESLEVEEGQEVLEIGTGTGYSTALLCHRLGEDNVTTVDVDP 178


>gi|260912006|ref|ZP_05918569.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633884|gb|EEX52011.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 482

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 13/147 (8%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  ++E  AG GN+ + L   GA +VI  EKD+    +L           +++ +D L V
Sbjct: 29  GKVILEPSAGSGNIVRWLKNNGAGEVIACEKDKHLQKLLA-------GECQLLAEDFLSV 81

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV---GERITA 164
             E+  +I     I+ N P++ G R + +            +L      E     E +T 
Sbjct: 82  TAEQVSHID---YIVMNPPFSEGIRHIRHAFEIAPAGCTIVALCNSTNLEKTWNSEYVTF 138

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDIS 191
           Q+    YG    +      A    D+ 
Sbjct: 139 QELVKLYGNSEYIGTAFDTAERKTDVG 165


>gi|241668258|ref|ZP_04755836.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876791|ref|ZP_05249501.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842812|gb|EET21226.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 253

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I E         +++IG G G LT  +   GA  ++ I+   Q    L      +PN ++
Sbjct: 26  IVELLSPQKDEKILDIGCGTGELTNKIKLQGA-SIVGIDVSNQM---LNQAKKNYPN-IQ 80

Query: 99  IIQDDA---LKVDFEKF 112
            I+ DA   L  + E F
Sbjct: 81  FIEADAQQDLPFNSENF 97


>gi|239980990|ref|ZP_04703514.1| O-methyltransferase [Streptomyces albus J1074]
          Length = 322

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQ 80
            ++ ++ ES    +G  V+EIG G G  T +L    G   V  ++ D 
Sbjct: 31 PALVLRMLESLEVEEGQEVLEIGTGTGYSTALLCHRLGEDNVTTVDVDP 79


>gi|254469520|ref|ZP_05082925.1| protein-L-isoaspartate O-methyltransferase protein [Pseudovibrio
           sp. JE062]
 gi|211961355|gb|EEA96550.1| protein-L-isoaspartate O-methyltransferase protein [Pseudovibrio
           sp. JE062]
          Length = 230

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 20/147 (13%)

Query: 12  TILSHYKIIPKKYM---GQNFL--------LD-------LNILKKIAESSGSLDGITVIE 53
            +L   + IP+K      Q FL        +D        +++ K+A+        +++E
Sbjct: 36  EVLGALEAIPRKLFLSASQQFLAYEDRAFPIDCGQMSTQPSLIGKVADFLQMKPDHSLLE 95

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKF 112
           IG+G G     +L+    +++ +E+ +    + ++       + +++I  D L    ++ 
Sbjct: 96  IGSGSGY-QCAVLSKICDRIVSLERYRTLADLARERLRSCKIHNVDVIHADGLVAPVDEE 154

Query: 113 FNISSPIRIIANLPYNIGTRLLFNWIS 139
            +     RII N         LF+ ++
Sbjct: 155 DDGGPFDRIILNGALERVPGFLFDRLA 181


>gi|15609560|ref|NP_216939.1| hypothetical protein Rv2423 [Mycobacterium tuberculosis H37Rv]
 gi|15841942|ref|NP_336979.1| hypothetical protein MT2496 [Mycobacterium tuberculosis CDC1551]
 gi|31793602|ref|NP_856095.1| hypothetical protein Mb2446 [Mycobacterium bovis AF2122/97]
 gi|121638304|ref|YP_978528.1| hypothetical protein BCG_2439 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662257|ref|YP_001283780.1| hypothetical protein MRA_2449 [Mycobacterium tuberculosis H37Ra]
 gi|148823626|ref|YP_001288380.1| hypothetical protein TBFG_12451 [Mycobacterium tuberculosis F11]
 gi|167969741|ref|ZP_02552018.1| hypothetical protein MtubH3_17640 [Mycobacterium tuberculosis
           H37Ra]
 gi|215404359|ref|ZP_03416540.1| hypothetical protein Mtub0_11885 [Mycobacterium tuberculosis
           02_1987]
 gi|215412177|ref|ZP_03420941.1| hypothetical protein Mtub9_12622 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215446670|ref|ZP_03433422.1| hypothetical protein MtubT_12269 [Mycobacterium tuberculosis T85]
 gi|218754153|ref|ZP_03532949.1| hypothetical protein MtubG1_12304 [Mycobacterium tuberculosis GM
           1503]
 gi|224990798|ref|YP_002645485.1| hypothetical protein JTY_2433 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798499|ref|YP_003031500.1| hypothetical protein TBMG_01551 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232561|ref|ZP_04925888.1| hypothetical protein TBCG_02367 [Mycobacterium tuberculosis C]
 gi|254365198|ref|ZP_04981244.1| hypothetical protein TBHG_02362 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551472|ref|ZP_05141919.1| hypothetical protein Mtube_13599 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187431|ref|ZP_05764905.1| hypothetical protein MtubCP_15561 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201550|ref|ZP_05769041.1| hypothetical protein MtubT4_15892 [Mycobacterium tuberculosis T46]
 gi|260205728|ref|ZP_05773219.1| hypothetical protein MtubK8_15654 [Mycobacterium tuberculosis K85]
 gi|289443946|ref|ZP_06433690.1| hypothetical protein TBLG_01048 [Mycobacterium tuberculosis T46]
 gi|289448065|ref|ZP_06437809.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289553787|ref|ZP_06442997.1| hypothetical protein TBXG_01537 [Mycobacterium tuberculosis KZN
           605]
 gi|289575116|ref|ZP_06455343.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289746204|ref|ZP_06505582.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289758553|ref|ZP_06517931.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762590|ref|ZP_06521968.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994467|ref|ZP_06800158.1| hypothetical protein Mtub2_08123 [Mycobacterium tuberculosis 210]
 gi|297635029|ref|ZP_06952809.1| hypothetical protein MtubK4_12949 [Mycobacterium tuberculosis KZN
           4207]
 gi|297732021|ref|ZP_06961139.1| hypothetical protein MtubKR_13074 [Mycobacterium tuberculosis KZN
           R506]
 gi|298525905|ref|ZP_07013314.1| methyltransferase type 12 [Mycobacterium tuberculosis 94_M4241A]
 gi|307085107|ref|ZP_07494220.1| hypothetical protein TMLG_02175 [Mycobacterium tuberculosis
           SUMu012]
 gi|313659356|ref|ZP_07816236.1| hypothetical protein MtubKV_13089 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1666162|emb|CAB03773.1| HYPOTHETICAL PROTEIN Rv2423 [Mycobacterium tuberculosis H37Rv]
 gi|13882214|gb|AAK46793.1| hypothetical protein MT2496 [Mycobacterium tuberculosis CDC1551]
 gi|31619195|emb|CAD97307.1| HYPOTHETICAL PROTEIN Mb2446 [Mycobacterium bovis AF2122/97]
 gi|121493952|emb|CAL72427.1| Hypothetical protein BCG_2439 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124601620|gb|EAY60630.1| hypothetical protein TBCG_02367 [Mycobacterium tuberculosis C]
 gi|134150712|gb|EBA42757.1| hypothetical protein TBHG_02362 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506409|gb|ABQ74218.1| hypothetical protein MRA_2449 [Mycobacterium tuberculosis H37Ra]
 gi|148722153|gb|ABR06778.1| hypothetical protein TBFG_12451 [Mycobacterium tuberculosis F11]
 gi|224773911|dbj|BAH26717.1| hypothetical protein JTY_2433 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253320002|gb|ACT24605.1| hypothetical protein TBMG_01551 [Mycobacterium tuberculosis KZN
           1435]
 gi|289416865|gb|EFD14105.1| hypothetical protein TBLG_01048 [Mycobacterium tuberculosis T46]
 gi|289421023|gb|EFD18224.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438419|gb|EFD20912.1| hypothetical protein TBXG_01537 [Mycobacterium tuberculosis KZN
           605]
 gi|289539547|gb|EFD44125.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289686732|gb|EFD54220.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289710096|gb|EFD74112.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289714117|gb|EFD78129.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495699|gb|EFI30993.1| methyltransferase type 12 [Mycobacterium tuberculosis 94_M4241A]
 gi|308365368|gb|EFP54219.1| hypothetical protein TMLG_02175 [Mycobacterium tuberculosis
           SUMu012]
 gi|323719020|gb|EGB28169.1| hypothetical protein TMMG_01715 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904040|gb|EGE50973.1| hypothetical protein TBPG_01929 [Mycobacterium tuberculosis W-148]
 gi|328458267|gb|AEB03690.1| hypothetical protein TBSG_01561 [Mycobacterium tuberculosis KZN
           4207]
          Length = 348

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E++       V+EIGAG G     L   G   V V+E   +F  I++  + +    + +I
Sbjct: 141 EAADPT-THRVLEIGAGTGRNALALARRG-HPVDVVEMTPKFADIIRSDAERDSLDVRVI 198

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
             D      +        + +   +P    T+ L N      
Sbjct: 199 MRDVFST-MDDLRQDYQLMVLSEVVPDFRTTQQLRNLFELAA 239


>gi|324999715|ref|ZP_08120827.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudonocardia sp.
           P1]
          Length = 432

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           +  I + +G  DG+ V+EIG G G L       GAR   
Sbjct: 202 IDGILDMAGVRDGMHVLEIGTGWGGLATRAAQRGARVTT 240


>gi|291570133|dbj|BAI92405.1| putative methyltransferase [Arthrospira platensis NIES-39]
          Length = 356

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +         ++++GAG G  T  L   G   V  +E   +F  I+   + ++  R+ +
Sbjct: 149 VKEFNPPSSAPILDVGAGVGRNTLALARRG-HPVDAVELTPEFAQIIAKEAQENQLRVRV 207

Query: 100 IQDDAL 105
           IQ + L
Sbjct: 208 IQSNIL 213


>gi|126635169|emb|CAM56288.1| novel protein (zgc:110579) [Danio rerio]
          Length = 515

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 13  ILSHYKIIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           I   + + PKK      +G        ++K++ + +       V+++G+G G+LT+ L  
Sbjct: 68  IFRKH-VKPKKQHEIRRLG-------MLVKELCDQANCN---CVVDVGSGQGHLTRFLSF 116

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                V  IE D     +      Q    L      + K    +      P  ++  +  
Sbjct: 117 GLGLHVTGIEADPNLVSMATKFDRQLLQTLTKENQSSGKAHVLRSEPGPPPRHVVGWVNP 176

Query: 128 NIGTRLLFNWIS 139
                +    + 
Sbjct: 177 KASWDVFIQQLG 188


>gi|325918278|ref|ZP_08180418.1| methyltransferase, cyclopropane fatty acid synthase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535484|gb|EGD07340.1| methyltransferase, cyclopropane fatty acid synthase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 356

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +        I    + +     IL+    +    +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERYPNATITAVSNSRPQRAHILEQCRLRGLGNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQK 156
             D  AL +    F  + S         Y      + +W++     +   +    L +  
Sbjct: 186 TADVNALALPPGNFDRVVSVEMFEHMRNYRDLLARVGSWLAPGGKLFVHIFCHRDLAYPF 245

Query: 157 EVG 159
           EV 
Sbjct: 246 EVA 248


>gi|317499444|ref|ZP_07957711.1| methyltransferase type 11 [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893316|gb|EFV15531.1| methyltransferase type 11 [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 244

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           + +   +G  V+++G G G L  +L+     A  +  +E   +   +       +   ++
Sbjct: 34  DFAQVKNGGRVLDLGTGTGIL-PILMEAKTKAVHLTGLEIQPEMAKMAARSVKLNHLEDK 92

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +EI++ D  +      F+  S   I +N PY IG
Sbjct: 93  IEIVEGDIKEA--SAIFSHDSFDTITSNPPYMIG 124


>gi|297617814|ref|YP_003702973.1| ribosomal protein L11 methyltransferase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145651|gb|ADI02408.1| ribosomal protein L11 methyltransferase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 308

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
               +T+I+IG G G L      LGAR++I ++ D     + K+  +++    ++E+   
Sbjct: 167 VSKDMTLIDIGTGSGILAIAAAKLGARRIIALDLDPVAVQVAKENVARNGVEEQVEVWNL 226

Query: 103 DALKVD 108
           D  ++ 
Sbjct: 227 DFREMP 232


>gi|296424408|ref|XP_002841740.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637988|emb|CAZ85931.1| unnamed protein product [Tuber melanosporum]
          Length = 256

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 24/187 (12%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE--II 100
           G + G  V+E+GAG G  + +    GA +V+V +  D +    L    S  P  ++  I+
Sbjct: 80  GLVSGRRVLELGAGAGLPSLVCALRGAGEVVVTDYPDPELVSNLAHNVSTLPQPVQGSIV 139

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
               L        ++  P            T +L + +   +             K+  +
Sbjct: 140 AKGYL--WGRDVADLGDPFD----------TLILSDLLFNHSEHQALLRSVGSCLKKAAD 187

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMM-FDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
                  +PH         W  +  +  FD++    F   KV   V+   P     P   
Sbjct: 188 ARALVFFTPHRP-------WLYEKDLAFFDVAREAGFAVGKVLEEVL-IGPMFEEDPGDR 239

Query: 220 ESLKKIT 226
           E  K + 
Sbjct: 240 ELRKTVL 246


>gi|253579891|ref|ZP_04857159.1| glycosyl transferase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848890|gb|EES76852.1| glycosyl transferase [Ruminococcus sp. 5_1_39BFAA]
          Length = 730

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 15/175 (8%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +F    +I + I           V+EIG+G G +T  L    A++V  IE   +   I  
Sbjct: 57  HF---SHIRENILSWIPFTGEEKVLEIGSGCGAVTGALCER-AKEVTCIELSMKRSKINA 112

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY---NIGTR----LLFNWISA 140
                  N L+I+  +  +++          I +I    Y    I +          IS 
Sbjct: 113 YRHQDQDN-LKILVGNFQEIEKN-LTEKYDYITLIGVFEYGESYIRSENPYVDFLRIISK 170

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
              P     + L  +  +G +  A     H+G L        K   +   S   F
Sbjct: 171 HLKPDG--KIILAIENRLGLKYWAGCTEDHFGTLFEGIQGYPKTKGVKTFSRKEF 223


>gi|218290966|ref|ZP_03495014.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius LAA1]
 gi|218239048|gb|EED06252.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius LAA1]
          Length = 189

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
             ++ ++        VI+IGAGPG     L      KV  ++   +   +L + + +   
Sbjct: 24  ADRVLDALDVQAHHDVIDIGAGPGYFALPLARRTRGKVFAVDLSPEMLQMLSERARESGV 83

Query: 96  RLEIIQDDALKVDFEK 111
            +E  Q  A ++  E 
Sbjct: 84  SIEAHQAPAERLPLED 99


>gi|161869330|ref|YP_001598497.1| protein-L-isoaspartate O-methyltransferase [Neisseria meningitidis
           053442]
 gi|304388428|ref|ZP_07370534.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Neisseria
           meningitidis ATCC 13091]
 gi|161594883|gb|ABX72543.1| protein-L-isoaspartate O-methyltransferase [Neisseria meningitidis
           053442]
 gi|254673864|emb|CBA09647.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis alpha275]
 gi|304337545|gb|EFM03708.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Neisseria
           meningitidis ATCC 13091]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             ++ ++A+        TV+EIG G G  T  LL   A +V+  + D +
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGRVVSDDIDAE 110


>gi|159905453|ref|YP_001549115.1| methyltransferase small [Methanococcus maripaludis C6]
 gi|159886946|gb|ABX01883.1| methyltransferase small [Methanococcus maripaludis C6]
          Length = 260

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
              G  V ++G G G L  M+    A++V  +E D       K+   ++    +++I+DD
Sbjct: 32  VKPGDIVFDLGTGSGIL-AMIAARTAKQVYAVELDPITTEYTKENVKENNFKNIKVIEDD 90

Query: 104 ALKVDFEKFFNI 115
           A    F +  ++
Sbjct: 91  AAYYPFSEKADV 102


>gi|157374030|ref|YP_001472630.1| methyltransferase small [Shewanella sediminis HAW-EB3]
 gi|262828717|sp|A8FRM9|TRMN6_SHESH RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|157316404|gb|ABV35502.1| methyltransferase small [Shewanella sediminis HAW-EB3]
          Length = 244

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +   D   +++IGAG G L+ M       KV  IE D       +      P  +RL + 
Sbjct: 30  APLSDAQNILDIGAGSGLLSLMATQRSNAKVTSIELDDTAVNACQKNFEASPWTSRLTVK 89

Query: 101 QDDALKVDFEKFFNISSPI-RIIANLPY 127
                +   +   +  S    II N PY
Sbjct: 90  HSSVQEFSKQHQESEESLFDHIICNPPY 117


>gi|121634203|ref|YP_974448.1| protein-L-isoaspartate O-methyltransferase [Neisseria meningitidis
           FAM18]
 gi|120865909|emb|CAM09646.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis FAM18]
 gi|325127461|gb|EGC50390.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis N1568]
 gi|325131526|gb|EGC54233.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis M6190]
 gi|325139220|gb|EGC61766.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis ES14902]
 gi|325141579|gb|EGC64045.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis 961-5945]
 gi|325197617|gb|ADY93073.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis G2136]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             ++ ++A+        TV+EIG G G  T  LL   A +V+  + D +
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGRVVSDDIDAE 110


>gi|55980192|ref|YP_143489.1| hypothetical protein TTHA0223 [Thermus thermophilus HB8]
 gi|55771605|dbj|BAD70046.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 263

 Score = 40.2 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 34  NILKKIAESSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            I   +A +        V +E+G G G +   L+  G R  I ++ D     + +   + 
Sbjct: 25  QIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRY-IALDADAAMLEVFRQKIAG 83

Query: 93  HPNRLEIIQDDALKVDFEK 111
              +++++Q DA  +    
Sbjct: 84  VDRKVQVVQADARAIPLPD 102


>gi|332797674|ref|YP_004459174.1| precorrin-6y C5,15-methyltransferase subunit CbiE [Acidianus
           hospitalis W1]
 gi|332695409|gb|AEE94876.1| precorrin-6Y C5,15-methyltransferase(decarboxylating), CbiT subunit
           [Acidianus hospitalis W1]
          Length = 190

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLT-QMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEI 99
           +    G   ++IG+G G++T +  L +G++ KV  +EKD     + +    +   + + I
Sbjct: 30  AKLFHGAKFVDIGSGTGSVTVEAGLYVGSKGKVYAVEKDPNAVELTRKNIEKFDLHNVTI 89

Query: 100 IQD---DALKVDFEKF 112
           IQ    DALK   E+ 
Sbjct: 90  IQGESPDALKEIREEV 105


>gi|224004112|ref|XP_002295707.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585739|gb|ACI64424.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 215

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            L    V++IG G G LT+ L  LGA  V+ ++   +   + K  SS   +RLE   DD+
Sbjct: 71  PLHNKRVLDIGCGGGLLTESLSRLGASLVVGVDASPKVVDVAKMHSSHEYSRLEHDVDDS 130

Query: 105 L--KVDFEKFFNISSPIRIIANLPY 127
              +    + F+I + + +I ++P 
Sbjct: 131 TTNQHHDHELFDIVTALEVIEHVPN 155


>gi|116252686|ref|YP_768524.1| methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257334|emb|CAK08429.1| putative methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 269

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
            + +G  DG  V+++G G G+L   L    G +++  ++    F             R+ 
Sbjct: 29  IDFAGLADGDRVLDVGCGTGSLAFTLAETSGLQEIAAVDYSPVFVEAATRR--NTDPRVS 86

Query: 99  IIQDDALKVDFEKF-FNISSPIRIIANLP 126
           I Q DA  + FE   F+ +  + ++  +P
Sbjct: 87  IRQADACALPFEDDRFDRAMSLLVLHFVP 115


>gi|307191267|gb|EFN74914.1| Methyltransferase-like protein 5 [Camponotus floridanus]
          Length = 315

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 27/180 (15%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             ++G +V ++G+G G L+     LGA+ V+  E D     I     +     +EI+Q +
Sbjct: 152 NDIEGKSVADLGSGCGILSLGAKMLGAQYVVGFEIDSDAIDIQYRNCTDIELFVEIVQCN 211

Query: 104 ALKVDFEKFFNISSPIRIIANLPY----NIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
            L+    KF        +I N P+    N GT + F  ++         SL         
Sbjct: 212 VLQYLPGKFEKCFDT--VIMNPPFGTKNNAGTDMKFLEVAMKLSSNVVYSLH-------- 261

Query: 160 ERITAQKNSPHYGRLSVLTGWRTK----ATMMFDISPHVFF-PSPKVTSTV--IHFIPHL 212
                + ++  Y  LS  T    +    A + +D+     F     V   V  I F    
Sbjct: 262 -----KSSTRDY-VLSKATQLGAEGKVIAELRYDLPRAYKFHKKASVDIQVDFIRFELKR 315


>gi|229018772|ref|ZP_04175621.1| Methyltransferase type 11 [Bacillus cereus AH1273]
 gi|229025013|ref|ZP_04181442.1| Methyltransferase type 11 [Bacillus cereus AH1272]
 gi|228736348|gb|EEL86914.1| Methyltransferase type 11 [Bacillus cereus AH1272]
 gi|228742522|gb|EEL92673.1| Methyltransferase type 11 [Bacillus cereus AH1273]
          Length = 239

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     +      KV  +EK++      KD      
Sbjct: 25  LTKQLLAQLPLRHGANVLEIGCGTGKTAAYMTKELGYKVTAVEKNEIMIQKAKDRWLFDG 84

Query: 95  NRLEIIQDDA 104
             +++IQ D 
Sbjct: 85  LNIQLIQGDV 94


>gi|228475214|ref|ZP_04059940.1| caffeoyl-CoA O-methyltransferase [Staphylococcus hominis SK119]
 gi|314936270|ref|ZP_07843617.1| O-methyltransferase family protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270825|gb|EEK12227.1| caffeoyl-CoA O-methyltransferase [Staphylococcus hominis SK119]
 gi|313654889|gb|EFS18634.1| O-methyltransferase family protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 211

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           +NN    L+     + +          ++D   L  I +         ++EIG   G  +
Sbjct: 15  LNNNIEELRFYAEEHAVP---------IVDKLTLDMIKQLIRIHHSKNILEIGTAIGYSS 65

Query: 63  QMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDAL 105
               ++     +  IE+++      K      ++ N++ +I+ DAL
Sbjct: 66  MQFASVSPDISITTIERNENMIKQAKFNFKKFEYENQIRLIEGDAL 111


>gi|172035682|ref|YP_001802183.1| putative methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171697136|gb|ACB50117.1| putative methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 247

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 22/139 (15%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
             ++ ++ HY ++               L  +       D   ++++G G G L+  LL 
Sbjct: 27  RGIRQLIPHYDLM---------------LDTLVACVSI-DAHRILDLGCGTGELSLKLLK 70

Query: 68  LGAR-KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKV---DFEKFFNISSPIRI 121
                KV+ ++   +   + K      +   R+  IQ D       D +K    +    +
Sbjct: 71  HCPNAKVMAVDYSPRMLEMAKSKLEKTEFLERIRFIQGDFGAWANGDMKKEIGTNFDACV 130

Query: 122 IANLPYNIGTRLLFNWISA 140
            +   +++   + +  ++ 
Sbjct: 131 SSLAIHHLTDEMKYQLLTC 149


>gi|281357749|ref|ZP_06244235.1| Methyltransferase type 11 [Victivallis vadensis ATCC BAA-548]
 gi|281315696|gb|EFA99723.1| Methyltransferase type 11 [Victivallis vadensis ATCC BAA-548]
          Length = 253

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 23/59 (38%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G        EIG+G G   ++LL  G R++  +E +       +      P  + ++  
Sbjct: 35  GVGPDTVAAEIGSGTGIFARLLLEQGIRRLYAVEPNADMRKQAERELGGMPGFVSVVGA 93


>gi|86750023|ref|YP_486519.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris HaA2]
 gi|86573051|gb|ABD07608.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris HaA2]
          Length = 409

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHP 94
           +++AE+     G TV+EIG G G   +        +V+ +   ++     ++    +   
Sbjct: 182 QRLAEAIDLRPGQTVLEIGCGWGGFAEYAAKNFDARVVGLTISKEQRDFAQERMQRAGLA 241

Query: 95  NRLEIIQDD 103
           +++EI   D
Sbjct: 242 DKVEIRLQD 250


>gi|1652667|dbj|BAA17587.1| precorrin decarbocylase [Synechocystis sp. PCC 6803]
          Length = 227

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NR 96
           I  +    +   + +IGAG G +   L  L  R +++ +E+D++   +++    +     
Sbjct: 62  IISALQLKEESIIWDIGAGTGTIPVELALLCPRSRIVAVERDEEVAGLIRRNCERFGVTN 121

Query: 97  LEIIQDDA 104
           + + +  A
Sbjct: 122 VTVHEGSA 129


>gi|325133528|gb|EGC56191.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis M13399]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             ++ ++A+        TV+EIG G G  T  LL   A +V+  + D +
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGRVVSDDIDAE 110


>gi|319409801|emb|CBY90109.1| protein-L-isoaspartate O-methyltransferase (protein-beta-aspartate
           methyltransferase; PIMT; protein L-isoaspartyl
           methyltransferase; L-isoaspartyl protein carboxyl
           methyltransferase) [Neisseria meningitidis WUE 2594]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             ++ ++A+        TV+EIG G G  T  LL   A +V+  + D +
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGRVVSDDIDAE 110


>gi|294496590|ref|YP_003543083.1| methyltransferase type 12 [Methanohalophilus mahii DSM 5219]
 gi|292667589|gb|ADE37438.1| Methyltransferase type 12 [Methanohalophilus mahii DSM 5219]
          Length = 287

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           + K           +V++IGAGPG+L   L       V  +E  +    IL++   Q+
Sbjct: 54  VDKTLNELPLDPDYSVLDIGAGPGSLAIPLAER-VSHVTAVEPGKGMLEILQENIDQY 110


>gi|220934185|ref|YP_002513084.1| Methyltransferase type 11 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995495|gb|ACL72097.1| Methyltransferase type 11 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              + +     ++E+G G G L+       AR V+ I+       I ++ +   P    +
Sbjct: 33  VRLANTEPNQRILEVGVGTG-LSLPDYREDAR-VVGIDISPDMLKIARERARDLPQVEAL 90

Query: 100 IQDDA 104
           ++ DA
Sbjct: 91  LEMDA 95


>gi|167948395|ref|ZP_02535469.1| Phospholipid N-methyltransferase-like protein [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 124

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEK------------DQQF 82
           ++I E++      T++E+G+G G  T+ +L    +  K++ IE             D + 
Sbjct: 40  RRILEAAAITSAKTIVELGSGTGGTTRAILRAMPQHAKLLSIEINSHFHTLVSSIEDDRL 99

Query: 83  FPIL 86
              L
Sbjct: 100 IAHL 103


>gi|541428|pir||S41759 ribosomal protein L11 methyltransferase (EC 2.1.1.-) - Clostridium
           acetobutylicum
          Length = 300

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
             +   V +IG G G L      L A+KV+ ++ D       K+    +  N +EI+  +
Sbjct: 174 VNEDAEVFDIGTGSGILAIAAAKLNAKKVLGVDLDSVAVKAAKENIQYNNVNNIEILHGN 233

Query: 104 ALKV 107
            ++V
Sbjct: 234 LMEV 237


>gi|15894566|ref|NP_347915.1| ribosomal protein L11 methyltransferase [Clostridium acetobutylicum
           ATCC 824]
 gi|18314338|sp|P45558|PRMA_CLOAB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|15024213|gb|AAK79255.1|AE007641_1 SAM-dependent methyltransferase [Clostridium acetobutylicum ATCC
           824]
 gi|325508698|gb|ADZ20334.1| ribosomal protein L11 methyltransferase [Clostridium acetobutylicum
           EA 2018]
          Length = 311

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
             +   V +IG G G L      L A+KV+ ++ D       K+    +  N +EI+  +
Sbjct: 174 VNEDAEVFDIGTGSGILAIAAAKLNAKKVLGVDLDSVAVKAAKENIQYNNVNNIEILHGN 233

Query: 104 ALKV 107
            ++V
Sbjct: 234 LMEV 237


>gi|330684846|gb|EGG96536.1| O-methyltransferase [Staphylococcus epidermidis VCU121]
          Length = 210

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPI 85
           Q  ++D N L+ I +         ++EIG   G       ++    +V  IE++ +    
Sbjct: 30  QVPIVDRNTLEMIKQIIRINHTTRILEIGTAIGYSAMQFASVSDDIQVTTIERNSEMIHQ 89

Query: 86  LKDISS--QHPNRLEIIQDDALK 106
            K   S   + +R+ +I+ DAL+
Sbjct: 90  AKSNISNNHYSHRIRLIEGDALE 112


>gi|15898819|ref|NP_343424.1| hypothetical protein SSO2027 [Sulfolobus solfataricus P2]
 gi|227829825|ref|YP_002831604.1| Methyltransferase type 11 [Sulfolobus islandicus L.S.2.15]
 gi|284997095|ref|YP_003418862.1| Methyltransferase type 11 [Sulfolobus islandicus L.D.8.5]
 gi|13815308|gb|AAK42214.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|227456272|gb|ACP34959.1| Methyltransferase type 11 [Sulfolobus islandicus L.S.2.15]
 gi|284444990|gb|ADB86492.1| Methyltransferase type 11 [Sulfolobus islandicus L.D.8.5]
          Length = 189

 Score = 40.2 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 30 LLDL--NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          L+     IL +  +     +  TV+++G GPG  T +L  +  + V  ++ D++    LK
Sbjct: 24 LVSPPNRILSRFVKY--LKEDYTVVDLGCGPGFFTTILARI-VKTVYAVDPDERAIRRLK 80

Query: 88 DISSQ 92
          +   +
Sbjct: 81 EKVQK 85


>gi|332712225|ref|ZP_08432153.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya
           majuscula 3L]
 gi|332349031|gb|EGJ28643.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya
           majuscula 3L]
          Length = 447

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQD 102
              G+ V+E+ +G G  +  LL  GA +V  IE D       +   S      +LE+I  
Sbjct: 228 ISPGMEVLELASGSGRFSIHLLEKGA-QVTGIEIDAGMLNQARVNLSDWLKKGQLELIHG 286

Query: 103 DALKVDFEKFFN 114
           D  + + ++ F+
Sbjct: 287 DIRRFELKRQFD 298


>gi|322411856|gb|EFY02764.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 210

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           +  H +  + ++             FL D  +  KK+ +        +     G  ++++
Sbjct: 22  DSLHDIHELNVTLLGFPFT------FLTDSGVFSKKMIDFGSQVLLNTLRFNKGERILDL 75

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L  +   +  +++ + +   + K  + Q+   + I Q +  +     F  
Sbjct: 76  GCGYGPLGISLAKVQDVEATLVDINNRAIDLAKKNARQNQVNVTIFQSNIYENVRGSF-- 133

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQK 156
                 II+N P   G +++   I     +      LT++ QK
Sbjct: 134 ----NHIISNPPIRAGKKVVHEIIEKSIDFLDDQGDLTIVIQK 172


>gi|268326089|emb|CBH39677.1| conserved hypothetical protein [uncultured archaeon]
          Length = 272

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            +I          TV++IGAGPG L   L     + V  +E        LK 
Sbjct: 51  DRIISKLDMDSDSTVLDIGAGPGTLAIPLAKR-VKSVTAVEPSIGMLECLKQ 101


>gi|260826269|ref|XP_002608088.1| hypothetical protein BRAFLDRAFT_91434 [Branchiostoma floridae]
 gi|229293438|gb|EEN64098.1| hypothetical protein BRAFLDRAFT_91434 [Branchiostoma floridae]
          Length = 262

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L  +++ + +A+      G +V+++G G G  TQ +   G + V+ I++   F    K+ 
Sbjct: 15  LQSVHVHRIMAQCLRWERGDSVLDVGCGTGRTTQHIAQQGVKSVVGIDQSPDFIRYTKEN 74

Query: 90  SSQHPNRLEIIQDDALKV 107
           +        +   D  + 
Sbjct: 75  AEDTNVSFSV--ADIQRF 90


>gi|120404221|ref|YP_954050.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119957039|gb|ABM14044.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1]
          Length = 208

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
               G   +EIG G G  +Q++L   GA ++  ++ D       +   + + +R+ +   
Sbjct: 32  RLPPGSGALEIGCGSGYGSQLVLQRFGAARIDAVDLDPAMIERARTRLAPYGDRVHLATG 91

Query: 103 DALKVDFEKFFNISSPIRIIA 123
            A  +      +  S   +  
Sbjct: 92  SATDLREALNADDGSYDAVFD 112


>gi|15614619|ref|NP_242922.1| hypothetical protein BH2056 [Bacillus halodurans C-125]
 gi|10174675|dbj|BAB05775.1| BH2056 [Bacillus halodurans C-125]
          Length = 187

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 20/127 (15%)

Query: 29  FLLDLNIL-----------KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIV 75
           FLL+   +           +K+  S        +IE G G G  T  +L        V++
Sbjct: 10  FLLNPRTIGAILPSSDYLAEKMMASVCFEQAKYIIEYGPGTGVFTDKILRYRHPDTVVMI 69

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDA------LKVDFEKFFNISSPIRIIANLPYNI 129
           IE +++FF IL +      N + II   A      +K     F +        A+LP ++
Sbjct: 70  IEHNREFFCILNEKYQDEKN-VIIINGSAEHIETYVKEHNIPFVDYIISGLPFASLPLHV 128

Query: 130 GTRLLFN 136
              +L  
Sbjct: 129 SNAILNK 135


>gi|84496192|ref|ZP_00995046.1| putative methyltransferase [Janibacter sp. HTCC2649]
 gi|84382960|gb|EAP98841.1| putative methyltransferase [Janibacter sp. HTCC2649]
          Length = 258

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 4/131 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
           A S+     + VI++G G G L   L   G   V V++        L+  +++    +R+
Sbjct: 32  ARSAELERPLRVIDLGGGTGGLAVPLAVAG-HDVTVVDPSPDALASLRRRAAEAQASSRV 90

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
             +Q DA  ++     +    +     L Y    +     I+    P    SL  + Q+ 
Sbjct: 91  SAVQGDADTLESLVGRDRPDLVLCHGTLEYVDDPQATLAQIAGVLAPGGILSLV-VPQRS 149

Query: 158 VGERITAQKNS 168
                 A    
Sbjct: 150 AAVIARALAGQ 160


>gi|57242745|ref|ZP_00370682.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57016674|gb|EAL53458.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 264

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
          FLL   ++K I +++  L+ + V+E+GAG G LT+ML  +    V  +E
Sbjct: 22 FLL-EKLIKCINDTNKPLEDLRVVEVGAGTGKLTKMLAEIFKLNVTAVE 69


>gi|332798043|ref|YP_004459542.1| methyltransferase small [Tepidanaerobacter sp. Re1]
 gi|332695778|gb|AEE90235.1| methyltransferase small [Tepidanaerobacter sp. Re1]
          Length = 251

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 14/107 (13%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-----DQQF 82
           F +D  +L    ++        VI+IG G G +  +L     A++++ IE      D+  
Sbjct: 31  FAIDSVLLANFIKA---DKNDRVIDIGTGSGVIALLLSAKTDAKEIVGIEIVGEAFDR-- 85

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             +     ++   R++I+  D LK +  K F   S   ++ N PY +
Sbjct: 86  -AVRNVKMNRLEERVKIVHGD-LK-EAVKIFGRESFSVVVTNPPYMM 129


>gi|323476778|gb|ADX82016.1| Methyltransferase type 11 [Sulfolobus islandicus HVE10/4]
          Length = 189

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 30 LLDL--NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          L+     IL +  +     +  TV+++G GPG  T +L  +  + V  ++ D++    LK
Sbjct: 24 LVSPPNRILSRFVKY--LKEDYTVVDLGCGPGFFTTILARI-VKTVYAVDPDERAIRRLK 80

Query: 88 DISSQ 92
          +   +
Sbjct: 81 EKVQK 85


>gi|306844338|ref|ZP_07476930.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1]
 gi|306275410|gb|EFM57151.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1]
          Length = 346

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++     G  +++   G G  T+ +L  GA  VI I+ D       + +  +
Sbjct: 20  PVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDCDPTAIEAGRAMEKE 78

Query: 93  HPNRLEIIQDDALKVD 108
            P RL +++     +D
Sbjct: 79  FPGRLNLVESRFSALD 94


>gi|298291909|ref|YP_003693848.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Starkeya
           novella DSM 506]
 gi|296928420|gb|ADH89229.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Starkeya
           novella DSM 506]
          Length = 220

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           +L++  +L K+ +++       V+++GA  G  T +L  L A +V+ +E+D +  
Sbjct: 63  YLMEPMVLAKLLQAAEIGPEALVLDVGAASGYSTAVLAKL-AGQVVALEEDAELA 116


>gi|288924992|ref|ZP_06418928.1| ribosomal protein L11 methyltransferase [Prevotella buccae D17]
 gi|288338182|gb|EFC76532.1| ribosomal protein L11 methyltransferase [Prevotella buccae D17]
          Length = 288

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDD 103
            LDG  +++ G G G L      +GAR+V+  + D+      +  +   H   LE+   D
Sbjct: 150 DLDGKRILDCGCGTGILGIAAAKMGAREVVGYDIDEWSVENTRHNAELNHVENLEVYHGD 209

Query: 104 A 104
           A
Sbjct: 210 A 210


>gi|284166249|ref|YP_003404528.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284015904|gb|ADB61855.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 290

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E         ++++G G G L+++L         V+  D      L +I++ H + +  +
Sbjct: 45  ELLALESRQRILDVGCGTGELSRVLREEAPDDATVVGCDAD--RELLEIAADHDDPVPAV 102

Query: 101 QDDALKVDFEK 111
             DAL++ F  
Sbjct: 103 AGDALRLPFSD 113


>gi|226364636|ref|YP_002782418.1| tRNA (guanine-N(7)-)-methyltransferase [Rhodococcus opacus B4]
 gi|226243125|dbj|BAH53473.1| tRNA (guanine-N(7)-)-methyltransferase [Rhodococcus opacus B4]
          Length = 246

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
            D   ++EIG+G G  T  +        ++ +E        +L+ I       + +++ D
Sbjct: 71  RDAPLILEIGSGTGTATAAMAKAEPHVNLMAVEVYRPGLAQLLQQIERDEIPNIRVLRGD 130

Query: 104 ALKV 107
           A+ V
Sbjct: 131 AMDV 134


>gi|268326458|emb|CBH40046.1| conserved hypothetical protein, SAM-dependent methyltransferase
           type 12 family [uncultured archaeon]
          Length = 276

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N++  I +         V++IGAGPG LT  +  L   KV V++  +    +L++ ++ 
Sbjct: 50  RNVIDVIKDFIE--PDFEVLDIGAGPGTLTIPIARL-VNKVTVVDPSKGMIKVLEESAAA 106


>gi|262370030|ref|ZP_06063357.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315069|gb|EEY96109.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 217

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 3/120 (2%)

Query: 45  SLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQD 102
                  +EIGAG G +          +K+I +E+  ++F  + K  S +    L+++  
Sbjct: 20  ISPDPLCVEIGAGKGKHALLFTANHPEKKLIAVERTREKFVAMQKQHSLEGQQNLQLVHA 79

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           DAL                I   P          W++   +      L +  Q  +   I
Sbjct: 80  DALPWVVHALQPQQVEQFFI-LYPNPEPHNPAQRWLNMPFFEFLISRLQVGGQITLASNI 138


>gi|196233838|ref|ZP_03132676.1| Methyltransferase type 11 [Chthoniobacter flavus Ellin428]
 gi|196222032|gb|EDY16564.1| Methyltransferase type 11 [Chthoniobacter flavus Ellin428]
          Length = 308

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 55/141 (39%), Gaps = 11/141 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK------VIVIEKDQQFFPILKDISSQ 92
           I + +    G TV+++G G G+L    L   AR+      +  +E   +     +  + +
Sbjct: 125 ILQIAELQPGETVLDVGCGTGSL----LIEAARQMGSGSLLHGVEPSSEMLAHARHKAKE 180

Query: 93  HPNRLEIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
             +  + +Q  A ++ F  + F++     ++ +LP ++ T  +               + 
Sbjct: 181 LISETQFVQGSADQIPFPGRSFDVVFCTMVLHHLPASVQTGAIKEMCRVVRPNGRIVIID 240

Query: 152 LLFQKEVGERITAQKNSPHYG 172
           +   + V  +++       +G
Sbjct: 241 MQPPRTVAAKLSIVTLFHKFG 261


>gi|167945098|ref|ZP_02532172.1| protein-L-isoaspartate O-methyltransferase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 187

 Score = 40.2 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 8/148 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + +        T++EIG G G  T +L  L  R+V  +E      P L + + +
Sbjct: 31  PYIVALMTDLLQPEPDHTILEIGTGSGYQTAILSQLC-RRVCTMEV----IPELSETAKR 85

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWESL 150
               +     D    +    +   +P    I+     +I    L   +            
Sbjct: 86  RFGEMGYDNIDVQTGNGYLGWPEHAPYDGVIVTAAAGHI-PPALVEQLRPGGRLVIPVGQ 144

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLT 178
              +Q+ +      + NS     LSV  
Sbjct: 145 PYSYQELMLVEKDREGNSHTRNILSVAF 172


>gi|20093502|ref|NP_613349.1| RNA methylase [Methanopyrus kandleri AV19]
 gi|19886334|gb|AAM01279.1| Predicted RNA methylase [Methanopyrus kandleri AV19]
          Length = 204

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            +L  IA+    L+   V+++GAG G +       GA +V  +E D +   + +    + 
Sbjct: 34  RVLLSIADREFGLECSRVLDLGAGTGRIGIGAALAGACEVTCVEVDSKAVEVARRNVKRA 93

Query: 94  --PNRLEIIQDDALKVDFEKFFNI 115
              +R+E+++ D    + E  +++
Sbjct: 94  GVEDRVEVVEADVRDFEPEDQYDV 117


>gi|172056821|ref|YP_001813281.1| ribosomal protein L11 methyltransferase [Exiguobacterium sibiricum
           255-15]
 gi|226710085|sp|B1YKT1|PRMA_EXIS2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|171989342|gb|ACB60264.1| ribosomal protein L11 methyltransferase [Exiguobacterium sibiricum
           255-15]
          Length = 315

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 40  AESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPN 95
            ++      D   V+++G G G L      LGA+ V  ++ D+       D  +  +   
Sbjct: 168 IQAIENYLQDNDRVVDVGTGSGVLAIAAAKLGAKDVFALDLDEVAVRSATDNVALNKVSQ 227

Query: 96  RLEIIQDDALK 106
           ++ + Q D +K
Sbjct: 228 QVTVRQGDLMK 238


>gi|326333595|ref|ZP_08199834.1| hypothetical protein NBCG_05030 [Nocardioidaceae bacterium Broad-1]
 gi|325948611|gb|EGD40712.1| hypothetical protein NBCG_05030 [Nocardioidaceae bacterium Broad-1]
          Length = 184

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 5/126 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQH- 93
           ++   +         V+EIG GPG   +++   L   K+  I++ +      K   +++ 
Sbjct: 23  IRWAVDFMDIQPNDHVLEIGCGPGAGAELICSRLETGKLFAIDRSESGVDRTKRRCAKYL 82

Query: 94  -PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF-WESLT 151
              RL + Q D L         ++       NL +          +     P        
Sbjct: 83  EAGRLTVRQID-LATLRVPVKRLTKVFAFNVNLFWVRDASAEIALLHERVLPGGTVNLFY 141

Query: 152 LLFQKE 157
              Q+E
Sbjct: 142 EATQRE 147


>gi|296269734|ref|YP_003652366.1| type 11 methyltransferase [Thermobispora bispora DSM 43833]
 gi|296092521|gb|ADG88473.1| Methyltransferase type 11 [Thermobispora bispora DSM 43833]
          Length = 275

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 18/93 (19%)

Query: 4  NNKSHSLKTILSHYKIIPKKYMGQNFLLDLN-------ILKKIAESSGSLDGITVIEIGA 56
          +N  H+ + +   + + P++Y       D         ++++I  +S    G  V+++G 
Sbjct: 13 SNDPHTARQVAESFGVDPERY-------DRARPRYPDALVERIVAAS---PGPDVLDVGC 62

Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
          G G   +     G   V+ ++ D +     +  
Sbjct: 63 GTGIAARQFRAAGC-TVLGVDPDARMAGHARRT 94


>gi|167044203|gb|ABZ08884.1| putative protein-L-isoaspartate(D-aspartate) O-methyltransferase
           (PCMT) [uncultured marine microorganism HF4000_APKG5H11]
          Length = 246

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91
             I+  I E+        V+E+GAG G    +L  L     V+ +E  +      +D   
Sbjct: 93  PYIVALITEALRLQLADRVLEVGAGSGYQAAVLAELVPDGNVVAVELVRSLAQRARDTLD 152

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
               +  I+ +DA +     +      I + A  P 
Sbjct: 153 DLDYK-NIVVEDASESLGCSWRGPYDAIVVSAAAPT 187


>gi|152971431|ref|YP_001336540.1| putative enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|262040310|ref|ZP_06013561.1| SAM-dependent methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330007679|ref|ZP_08306018.1| methyltransferase small domain protein [Klebsiella sp. MS 92-3]
 gi|262828519|sp|A6TCI9|TRMN6_KLEP7 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|150956280|gb|ABR78310.1| putative enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|259042419|gb|EEW43439.1| SAM-dependent methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535360|gb|EGF61842.1| methyltransferase small domain protein [Klebsiella sp. MS 92-3]
          Length = 245

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKD--ISSQHPNRLE 98
           +       V++IGAG G L  ML       V    +E D++     ++  ++S   +R+E
Sbjct: 40  APIAGVKHVLDIGAGSGLLALMLAQRTGDDVHVEAVELDEEAAAQARENALASPWASRIE 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + Q D       +         II+N P+
Sbjct: 100 VWQADI---HQWQPSQTRRYELIISNPPF 125


>gi|111022143|ref|YP_705115.1| tRNA (guanine-N(7))-methyltransferase [Rhodococcus jostii RHA1]
 gi|123045769|sp|Q0S679|TRMB_RHOSR RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|110821673|gb|ABG96957.1| probable tRNA (guanine-N(7)-)-methyltransferase [Rhodococcus jostii
           RHA1]
          Length = 258

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
            D   ++EIG+G G  T  +        ++ +E        +L+ I       + +++ D
Sbjct: 83  RDAPLILEIGSGTGTATAAMAKAEPHVNLMAVEVYRPGLAQLLQQIERDEIPNIRVLRGD 142

Query: 104 ALKV 107
           A+ V
Sbjct: 143 AMDV 146


>gi|127511702|ref|YP_001092899.1| methyltransferase small [Shewanella loihica PV-4]
 gi|262828704|sp|A3QAZ2|TRMN6_SHELP RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|126636997|gb|ABO22640.1| methyltransferase small [Shewanella loihica PV-4]
          Length = 243

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +      T+++IGAG G L+ M        +  +E D       +    Q P  +R+ +I
Sbjct: 30  APLTQAKTILDIGAGSGLLSLMAAQRSEAVIQALEIDPLAAQDCQHNIDQSPWSDRITLI 89

Query: 101 QDDALKVDFEKFFNISSPI-RIIANLPY 127
           Q D L+          +    I+ N PY
Sbjct: 90  QADLLQWYPLAQTQAQTQFDHILCNPPY 117


>gi|124516335|gb|EAY57843.1| putative TRNA (1-methyladenosine) methyltransferase [Leptospirillum
           rubarum]
          Length = 276

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFF----PILKDISSQHPNRL 97
               G+ V+E G G G +T  LL + A    V  +EK ++        L+ ++ +  +  
Sbjct: 94  DIRPGLRVLESGIGSGAMTLSLLRMCAPGGHVTSVEKREEHAVLAMENLERLAPELLSSH 153

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +I  D    D           R++ +LP
Sbjct: 154 RLILGDISGPDLPTMLGPEPFDRVLLDLP 182


>gi|319779033|ref|YP_004129946.1| Protein-L-isoaspartate O-methyltransferase [Taylorella
           equigenitalis MCE9]
 gi|317109057|gb|ADU91803.1| Protein-L-isoaspartate O-methyltransferase [Taylorella
           equigenitalis MCE9]
          Length = 227

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN 95
            +IA+S   L   T +EIG G G     LL+    +V  +E +        ++++  H +
Sbjct: 77  ARIAQSLSLLPTDTCLEIGTGSG-FQAALLSRLCTEVESVEINPNIANFAMENLARNHIS 135

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            + +   DA      + +N    I I  + P
Sbjct: 136 NVRVQIGDASSGWGTREYNA---IAITGSCP 163


>gi|254173370|ref|ZP_04880043.1| SAM-dependent methyltransferase [Thermococcus sp. AM4]
 gi|214032779|gb|EEB73608.1| SAM-dependent methyltransferase [Thermococcus sp. AM4]
          Length = 285

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
             ++   +    I   +  G N L D     K   +    +G TV++   G G  T +  
Sbjct: 88  VPTIPPTIEINGIRMHRTKGVNPLQDTR--NK-VNAVKPKEGETVLDTCMGLGY-TAIEA 143

Query: 67  TLGARKVIVIEKDQQFFPILK----DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           +     VI IEKD+    + +            R+++I  DA +V   K F   S   +I
Sbjct: 144 SKRGAYVITIEKDKNVIELARINPWSRELFTGGRIQVIHGDAFEV--VKRFKDESFDVVI 201

Query: 123 ANLP 126
            + P
Sbjct: 202 HDPP 205


>gi|187777559|ref|ZP_02994032.1| hypothetical protein CLOSPO_01150 [Clostridium sporogenes ATCC
           15579]
 gi|187774487|gb|EDU38289.1| hypothetical protein CLOSPO_01150 [Clostridium sporogenes ATCC
           15579]
          Length = 196

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH 93
           ++ I   +   +G  V++IG+G G L   L  +      +  ++  +    +        
Sbjct: 25  IEYILSKANLKEGDKVLDIGSGTGVLIPYLENIICNIGHITAMDIAENMLKV--SKGKNT 82

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
            + L+ I  D L    +K F+
Sbjct: 83  YSNLDFIVGDFLGYKSKKTFD 103


>gi|114566742|ref|YP_753896.1| hypothetical protein Swol_1216 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337677|gb|ABI68525.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 286

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQD 102
               +TV++IG+GPG+    L   GAR V+ ++   +   IL++ +    P  +  +Q 
Sbjct: 69  IKSDMTVLDIGSGPGSFAIPLAERGAR-VVALDPASRMLEILQENLPPSMPGSVNCVQA 126


>gi|332710585|ref|ZP_08430530.1| methyltransferase domain protein [Lyngbya majuscula 3L]
 gi|332350640|gb|EGJ30235.1| methyltransferase domain protein [Lyngbya majuscula 3L]
          Length = 274

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ +  E +       ++E+G GPG  T     LG   ++ IE  Q+   + +   SQ
Sbjct: 39  QQLINRAVELAQLPADGIILEVGCGPGTATTAFADLG-FSIVAIEPSQESCQLARHNCSQ 97

Query: 93  HPNRLEIIQ 101
           +P  +E+I 
Sbjct: 98  YPA-VELIN 105


>gi|327440959|dbj|BAK17324.1| ribosomal protein L11 methylase [Solibacillus silvestris StLB046]
          Length = 312

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
                TV+++G G G L+     LGA+ V  ++ D+      ++     +  + +E+   
Sbjct: 173 VQHDHTVVDVGTGSGVLSIGAAMLGAKSVHALDLDEVAVNAARENVELNKMSDIVEVFHG 232

Query: 103 DALKVDFEK 111
           + L    E 
Sbjct: 233 NLLDTVKEP 241


>gi|283782180|ref|YP_003372935.1| methyltransferase type 11 [Pirellula staleyi DSM 6068]
 gi|283440633|gb|ADB19075.1| Methyltransferase type 11 [Pirellula staleyi DSM 6068]
          Length = 245

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQ 92
            +I  +     G TV +IGAG G +   L     +   VI  D   Q    L   S+ 
Sbjct: 80  DEIVAALALTPGATVADIGAGTGYMVAHLSKAAGKDGTVIAIDASTQMIEYLTKRSAD 137


>gi|320008609|gb|ADW03459.1| Methyltransferase type 12 [Streptomyces flavogriseus ATCC 33331]
          Length = 264

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 10/106 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +       V+++  G G++T  LL    R     ++ D     I +       +R+  + 
Sbjct: 52  AVVGPEPRVLDLACGTGSITDRLLKRFPRATSTGVDLDPALLAIARGTFEG-DDRVTFVT 110

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            D          + +   R+       + T    +W+ ++     +
Sbjct: 111 AD--------LKDAAWTERLPHEAYDAVLTATALHWLHSEPLATLY 148


>gi|240102167|ref|YP_002958475.1| SAM-dependent methyltransferase [Thermococcus gammatolerans EJ3]
 gi|239909720|gb|ACS32611.1| SAM-dependent methyltransferase [Thermococcus gammatolerans EJ3]
          Length = 281

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 7   SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
             ++   +    I   +  G N L D    +    +    +G TV++   G G  T +  
Sbjct: 88  VPTIPPTIEINGIRMHRTKGTNPLQD---TRSKVNAVKPREGETVLDTCMGLGY-TAIEA 143

Query: 67  TLGARKVIVIEKDQQFFPILK----DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           +     VI IEKD     + +            ++++IQ DA +V   K FN  +   II
Sbjct: 144 SKRGAYVITIEKDPNVIELARINPWSRELFTGGKIQVIQGDAFEV--VKRFNDETFDVII 201

Query: 123 ANLP 126
            + P
Sbjct: 202 HDPP 205


>gi|134102544|ref|YP_001108205.1| methyltransferase (methylase) [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915167|emb|CAM05280.1| possible methyltransferase (methylase) [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 208

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEI 99
           ES+  L G  V+++  G G L    L+ GA     +E D++   +L+  +S    R + +
Sbjct: 52  ESATELAGARVLDLYGGSGALGLEALSRGAAHATFVESDRRAVQLLRRNASALGFRDVSV 111

Query: 100 IQDDALKVDFEKFFNISSPIRII-ANLPYNIGTRLLFNWISA 140
            Q    KV+         P  ++ A+ PY++    L   + +
Sbjct: 112 AQG---KVETVLASAAGEPFDVVLADPPYDVDAARLDQVLRS 150


>gi|256394948|ref|YP_003116512.1| methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
 gi|256361174|gb|ACU74671.1| Methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
          Length = 258

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 25/201 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDA-- 104
           T+++IGAG G+ T  L     A +VI I++       L+  ++      RL  +Q D   
Sbjct: 33  TIVDIGAGTGSGTFALARRFEAAEVIAIDQSPTMLDRLQSAAASRGVAGRLRTVQADLDA 92

Query: 105 ---------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
                    L        +++ P R++A++   +    L   +  D  P F         
Sbjct: 93  GWPAIGTADLAWAASSLHHVADPDRVLADVHAALNPGGLLVVVEMDAMPRFLPEGVYPGL 152

Query: 156 KEVGERITAQKNSPHY----GRLSVLTGWRTKATMMFDI-----SPHVFFPSPKVTSTVI 206
           ++    I        +      L        +   +FDI      P     + +V S  +
Sbjct: 153 EQRCRAIADGNGWNSWPNWTSHLERAGFTVAE-EQVFDIDVRPAPPAANRYAHRVMSG-M 210

Query: 207 HFIPHLNPIPCCLESLKKITQ 227
                    P  L ++ ++  
Sbjct: 211 RNRLAEQLSPEDLAAMDRLLD 231


>gi|297560260|ref|YP_003679234.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844708|gb|ADH66728.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 382

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            +I+  +        G+ V+E+G G G N   +   LG   V  +E D       +    
Sbjct: 92  PSIVADMLHRLDVFPGMRVLEVGTGTGYNAGLLSHRLGGENVTTVEIDADLAEQARVRLL 151

Query: 92  QHPNRLEIIQDD 103
                  ++  D
Sbjct: 152 DAGFAAHVVTGD 163


>gi|1246430|emb|CAA48793.1| orfB [Clostridium acetobutylicum]
          Length = 298

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
             +   V +IG G G L      L A+KV+ ++ D       K+    +  N +EI+  +
Sbjct: 174 VNEDAEVFDIGTGSGILAIAAAKLNAKKVLGVDLDSVAVKAAKENIQYNNVNNIEILHGN 233

Query: 104 ALKV 107
            ++V
Sbjct: 234 LMEV 237


>gi|260906701|ref|ZP_05915023.1| hypothetical protein BlinB_15332 [Brevibacterium linens BL2]
          Length = 439

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 12/130 (9%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLE 98
            +       T  ++G G G L  +LL  G  +V+  + + +     ++   +    +  E
Sbjct: 253 SAPEPSAPQTAFDLGTGTGVLAAVLLRRGVERVVATDINPRAVACAQENLDRLGLASSAE 312

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +++ D         F       I+ N P+        + + A  + P  + L        
Sbjct: 313 VVEAD--------LFPSGRADLIVCNPPWLPARP--TSALEAGIYDPGSDVLHRFIDGLA 362

Query: 159 GERITAQKNS 168
                A +  
Sbjct: 363 AYLNPAGEGW 372


>gi|268565275|ref|XP_002639392.1| Hypothetical protein CBG03980 [Caenorhabditis briggsae]
 gi|187036173|emb|CAP24779.1| hypothetical protein CBG_03980 [Caenorhabditis briggsae AF16]
          Length = 403

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK---------DQ-QFFPI 85
             I +         ++++G+G G L          RK + IE          D   +F  
Sbjct: 178 ASIIDELNIGPQDVLVDLGSGIGQLVCFTAAYAKCRKTVGIELSQTPANYANDLGDYFKK 237

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L +   +   R E  Q D L   F+K     + +  I N  +     L+F  I+ +    
Sbjct: 238 LMNHFGKTYGRFEHYQGDFLNPKFKKLICEEATVIFINNFAF--SPELMFR-ITNELLQD 294

Query: 146 FWESLTLLFQKEVGER 161
                 ++  K  G+ 
Sbjct: 295 LKHGTRIVTTKPFGDH 310


>gi|17232438|ref|NP_488986.1| hypothetical protein all4946 [Nostoc sp. PCC 7120]
 gi|17134084|dbj|BAB76645.1| all4946 [Nostoc sp. PCC 7120]
          Length = 251

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 19/144 (13%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLT---QMLLTLGARKVIVIEKDQQFFPILKDISSQ-H 93
           K+  +        V +IGAG G ++     LLT+G  KV  ++   +   IL+    + H
Sbjct: 83  KLINALNLKPDDVVADIGAGTGYISLQIAPLLTVG--KVFAVDIQPEMLEILEFFKQEKH 140

Query: 94  PNRLEIIQDDA-----------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              +E I   A           L +  + +     P  ++  +   +        +    
Sbjct: 141 IFNIEPILATANNPNLPPTSVDLALMVDAYHEFEYPQEVMQGIVQALKPGGKVVLVEYRG 200

Query: 143 WPPF--WESLTLLFQKEVGERITA 164
             PF   + L  + QK+V + + A
Sbjct: 201 ENPFIMIKRLHKMTQKQVRQEMAA 224


>gi|319782840|ref|YP_004142316.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168728|gb|ADV12266.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 344

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ E+     G  +I+   G G  T+ +L  GA  V+ I++D       +D+  Q
Sbjct: 26  PVLLAEVLEALVPAQGDLIIDGTFGAGGYTRAILATGA-SVVAIDRDPDAIAAGRDLEVQ 84

Query: 93  HPNRLEIIQDDALKVD 108
              RL ++Q     +D
Sbjct: 85  SGGRLRLVQAPFSTLD 100


>gi|303238635|ref|ZP_07325168.1| ribosomal protein L11 methyltransferase [Acetivibrio cellulolyticus
           CD2]
 gi|302593754|gb|EFL63469.1| ribosomal protein L11 methyltransferase [Acetivibrio cellulolyticus
           CD2]
          Length = 314

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
              G  VI++G G G L+ +   LGA  V  ++ D+    + K+  + +    ++   + 
Sbjct: 172 VKPGDKVIDLGCGTGILSIIAAKLGAEAVTAVDIDEVAVKVAKENCAINGVDGKVSAFRG 231

Query: 103 --DALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             D LK +       +    IIAN+  +I +++
Sbjct: 232 VIDDLKKEKADIIVAN----IIANVIIDISSKI 260


>gi|302341542|ref|YP_003806071.1| methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
 gi|301638155|gb|ADK83477.1| Methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
          Length = 203

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                  +EIG G G    M+L    ++   I+       + +  + +     RLE++  
Sbjct: 44  PRGDDVYLEIGCGGGYFLDMVLA-KVQRAAAIDHSADMAALARQKNQRAVEQGRLEVVHG 102

Query: 103 DALKVDFEK 111
           DA K+ +  
Sbjct: 103 DAEKLPWPD 111


>gi|297154199|gb|ADI03911.1| C5-O-methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 286

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 45/132 (34%), Gaps = 5/132 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDI 89
             +   +    G + G  V+++G G G  T  L      +V+ +       +    L + 
Sbjct: 51  DRLTDHLIGKLGDVAGRRVLDVGCGSGRPTVRLAQRAPTEVVGVTVSPVQIERATALAER 110

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
                +R+  ++ DA+ + F +  +  +   +          ++L               
Sbjct: 111 -EGVADRVRFVRADAMTLPFPE-ASFDAVWALECMFHMPSPAQVLREIARVLRPGGRLAV 168

Query: 150 LTLLFQKEVGER 161
           + ++ ++ +  R
Sbjct: 169 MDVVLREPIARR 180


>gi|284050038|ref|ZP_06380248.1| methyltransferase small [Arthrospira platensis str. Paraca]
 gi|291565725|dbj|BAI87997.1| putative methyltransferase [Arthrospira platensis NIES-39]
          Length = 236

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQ 101
                  +++IG G G +  +L      K+  +E D+  +    +  +  P  +RL+I  
Sbjct: 34  DVKSVDNILDIGTGSGLIALILAQRSPAKIDAVEIDRDAYIQASENIANSPWRSRLKIHH 93

Query: 102 ------DDALKVDFEKFFNISSPIRIIANLPYN 128
                  D   + ++   +             +
Sbjct: 94  NSIQQYADFCDIQYDLIISNPPFFANAYKPNNH 126


>gi|260655696|ref|ZP_05861169.1| putative methyltransferase [Jonquetella anthropi E3_33 E1]
 gi|260629613|gb|EEX47807.1| putative methyltransferase [Jonquetella anthropi E3_33 E1]
          Length = 246

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII 100
                    +E+G   G +  ++    +  V  +E DQ+F  + +  +  +   +RL  +
Sbjct: 35  VRLKRRERALELGCATGGVAMLMAWRSSAHVTGLEIDQRFVELARQNAESNGLSDRLSFV 94

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
             D  ++             + AN PY
Sbjct: 95  CGDLTQLWGRG--QGGEYDVVAANPPY 119


>gi|241764818|ref|ZP_04762824.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acidovorax
           delafieldii 2AN]
 gi|241365650|gb|EER60370.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acidovorax
           delafieldii 2AN]
          Length = 236

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ +    L    V+EIGAG G +   LL   A  V+ +E      P L +++  
Sbjct: 83  PRLEARMLQDLRLLPTDRVLEIGAGSGYM-AALLAHRAEHVVSLEI----VPALAEMARD 137

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           +  R  I        D  +      P  +I
Sbjct: 138 NLQRAGIANAHVRVSDGSRDAVPEGPFDVI 167


>gi|168703587|ref|ZP_02735864.1| hypothetical protein GobsU_28900 [Gemmata obscuriglobus UQM 2246]
          Length = 269

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           ++        V+E+G GPG  T+ +L        V+  D     +    ++   +R    
Sbjct: 34  DALDVCPDDRVVELGCGPGAFTRRILHRLGPDGAVVGVDSSPHLLEHATAALGTDRFRPT 93

Query: 101 QDDALK 106
             D  K
Sbjct: 94  LADVAK 99


>gi|229582474|ref|YP_002840873.1| Methyltransferase type 11 [Sulfolobus islandicus Y.N.15.51]
 gi|238619204|ref|YP_002914029.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.4]
 gi|228013190|gb|ACP48951.1| Methyltransferase type 11 [Sulfolobus islandicus Y.N.15.51]
 gi|238380273|gb|ACR41361.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.4]
          Length = 189

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 30 LLDL--NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          L+     IL +  +     +  TV+++G GPG  T +L  +  + V  ++ D++    LK
Sbjct: 24 LVSPPNRILSRFVKY--LKEDYTVVDLGCGPGFFTTILARI-VKTVYAVDPDERAIRRLK 80

Query: 88 DISSQ 92
          +   +
Sbjct: 81 EKVQK 85


>gi|218767537|ref|YP_002342049.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis Z2491]
 gi|121051545|emb|CAM07843.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis Z2491]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             ++ ++A+        TV+EIG G G  T  LL   A KV+  + D +
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGKVVSDDLDAE 110


>gi|290561725|gb|ADD38260.1| HemK methyltransferase family member 1 [Lepeophtheirus salmonis]
          Length = 305

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKD----- 88
            +KI + + + +  +V+EIG G G +   LL+     ++ + +++ +    + KD     
Sbjct: 107 TEKIIDLAIAFNPKSVLEIGCGSGAIAIGLLSECPSIQRCVAVDRSKMAVDLTKDNAKRL 166

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           + +Q+ ++LE++ +        ++        +I+N PY +
Sbjct: 167 LGNQNQSKLEVLCNPINSGGTFEYPIEGPFDLVISNPPYIL 207


>gi|160936493|ref|ZP_02083861.1| hypothetical protein CLOBOL_01384 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440578|gb|EDP18316.1| hypothetical protein CLOBOL_01384 [Clostridium bolteae ATCC
           BAA-613]
          Length = 555

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 9/96 (9%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDA 104
               V+E+G   G LT  L     ++V+ IE   ++    + I  ++   + LE+I  + 
Sbjct: 68  KDAQVLEVGGEFGALTGTLCKRC-KRVVSIE---RYSLRAEGIFKRYKTCSNLEVIAGEF 123

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           L + F + F+    + II  L Y  G++        
Sbjct: 124 LDIKFIEKFDF---VIIIGKLEYQSGSKFTSEIYEN 156


>gi|85858916|ref|YP_461118.1| SAM-dependent methyltransferase [Syntrophus aciditrophicus SB]
 gi|85722007|gb|ABC76950.1| SAM-dependent methyltransferase [Syntrophus aciditrophicus SB]
          Length = 267

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEII 100
             VIEIG G G  T  +     R V  IE       IL++  +    + +EI+
Sbjct: 56  DAVIEIGPGTGRWTIPVAKR-VRSVTAIEPSAGMVDILRENLNHAGFHNVEIL 107


>gi|294650736|ref|ZP_06728087.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823382|gb|EFF82234.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 362

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 4/103 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +      A+   V     Q   IL   S++  N +E++
Sbjct: 126 AQLHDGQDILELGCGWGSLTLWMAERYPNAKITAVSNSATQREHILSQASTRKLNNIEVL 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             D   L++D ++F  + S         Y      +  W+ AD
Sbjct: 186 TCDVNVLELDSDRFDRVVSVEMFEHVRNYEKLFEKIHRWLKAD 228


>gi|291518391|emb|CBK73612.1| Methyltransferase domain [Butyrivibrio fibrisolvens 16/4]
          Length = 264

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 29  FLLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           FL +      I+++    +   I++I+IGAGPG ++ +L   G +       D       
Sbjct: 45  FLTNE-----ISKAFPEKEPSEISIIDIGAGPGFISIILAEAGYKVTAFDFADT-MLEEA 98

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           K  + +  +R++ IQ DA+          S  + I  NL +N+
Sbjct: 99  KANAKELADRIQFIQGDAMDT---SLAPESYDVVISRNLTWNL 138


>gi|253584211|ref|ZP_04861409.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834783|gb|EES63346.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 251

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I E     +   + ++G G G  T+ + +   + VI +++++     LK+   ++   + 
Sbjct: 19  ILELLPIDNNQIIADLGCGIGEFTE-IASEKVKHVIAVDRNRDLLNNLKE---KNIKNVN 74

Query: 99  IIQDDALKVDF 109
           I++ D + +D+
Sbjct: 75  IVEKDIMNIDY 85


>gi|300775903|ref|ZP_07085763.1| methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300505453|gb|EFK36591.1| methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 230

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEI 99
             +       V+E+G G G ++ ML       + + ++ ++    + +      P RL +
Sbjct: 29  ALADVESASNVLEVGTGTGLISLMLAQRNPHAEFLGLDINEDAAQLTRLNFENSPFRLRL 88

Query: 100 --IQDDALKVDFEKFFNISSPIRIIANLPY 127
                D    +    F++     I++N PY
Sbjct: 89  KNSHQDFKTFETSDRFDL-----IVSNPPY 113


>gi|226953148|ref|ZP_03823612.1| possible cyclopropane-fatty-acyl-phospholipid synthase
           [Acinetobacter sp. ATCC 27244]
 gi|226836100|gb|EEH68483.1| possible cyclopropane-fatty-acyl-phospholipid synthase
           [Acinetobacter sp. ATCC 27244]
          Length = 362

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 4/103 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +      A+   V     Q   IL   S++  N +E++
Sbjct: 126 AQLHDGQDILELGCGWGSLTLWMAERYPNAKITAVSNSATQREHILSQASTRKLNNIEVL 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
             D   L++D ++F  + S         Y      +  W+ AD
Sbjct: 186 TCDVNVLELDSDRFDRVVSVEMFEHVRNYEKLFEKIHRWLKAD 228


>gi|126733411|ref|ZP_01749158.1| Protein-L-isoaspartate carboxylmethyltransferase [Roseobacter sp.
           CCS2]
 gi|126716277|gb|EBA13141.1| Protein-L-isoaspartate carboxylmethyltransferase [Roseobacter sp.
           CCS2]
          Length = 208

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             L K+ ++        V++I  G G  T +L  + +  V+ +E D       + I SQ
Sbjct: 56  RTLAKMIDALDIQPQHVVLDIACGLGYSTAVLARM-SDFVVAVEDDAARAQEAQSILSQ 113


>gi|111018616|ref|YP_701588.1| adenine specific DNA-methyltransferase [Rhodococcus jostii RHA1]
 gi|110818146|gb|ABG93430.1| possible adenine specific DNA-methyltransferase [Rhodococcus jostii
           RHA1]
          Length = 377

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEK 111
           IG G G L  +L   G  KVI  E D       +    +  +  ++++++ D        
Sbjct: 200 IGTGTGVLAAVLAHRGVEKVIATELDANALACARANLDRLGYGGQVQVVETD-------- 251

Query: 112 FFNISSPIRIIANLPY 127
            F       ++ N P+
Sbjct: 252 LFPEGRAPLVVCNPPW 267


>gi|4104516|gb|AAD02056.1| unknown [Clostridium acetobutylicum DSM 1731]
          Length = 244

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
             +   V +IG G G L      L A+KV+ ++ D       K+    +  N +EI+  +
Sbjct: 107 VNEDAEVFDIGTGSGILAIAAAKLNAKKVLGVDLDSVAVKAAKENIQYNNVNNIEILHGN 166

Query: 104 ALKV 107
            ++V
Sbjct: 167 LMEV 170


>gi|229578777|ref|YP_002837175.1| Methyltransferase type 11 [Sulfolobus islandicus Y.G.57.14]
 gi|228009491|gb|ACP45253.1| Methyltransferase type 11 [Sulfolobus islandicus Y.G.57.14]
          Length = 187

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 30 LLDL--NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          L+     IL +  +     +  TV+++G GPG  T +L  +  + V  ++ D++    LK
Sbjct: 24 LVSPPNRILSRFVKY--LKEDYTVVDLGCGPGFFTTILARI-VKTVYAVDPDERAIRRLK 80

Query: 88 DISSQ 92
          +   +
Sbjct: 81 EKVQK 85


>gi|256377970|ref|YP_003101630.1| methyltransferase type 12 [Actinosynnema mirum DSM 43827]
 gi|255922273|gb|ACU37784.1| Methyltransferase type 12 [Actinosynnema mirum DSM 43827]
          Length = 258

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 36/111 (32%), Gaps = 5/111 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEI 99
                 + + V+++  GPG ++  LL L  + + + ++ D     I +        RL  
Sbjct: 38  AHLKPAEDLVVLDLACGPGAISGRLLGLLPKARSVAVDVDPVLLAIGEGALGDVDGRLRW 97

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           ++ D    D+            +      + +    +W+        +   
Sbjct: 98  VRADLRDPDWPDALGADG----VDGTFDAVLSSTALHWLDPAVLTATYRRA 144


>gi|325129501|gb|EGC52329.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis OX99.30304]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             ++ ++A+        TV+EIG G G  T  LL   A +V+  + D +
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLASRVVSDDIDAE 110


>gi|313217005|emb|CBY38199.1| unnamed protein product [Oikopleura dioica]
          Length = 629

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 75/255 (29%), Gaps = 38/255 (14%)

Query: 12  TILSHYKIIPKKYMG--------QNFLL---DLNILKKIAESSGSLD---GITVIEIGAG 57
            I+ H+ +  +K++         +N L    +  I      ++          VIE+  G
Sbjct: 110 DIMRHHGVKHRKHLNTRYISPYMENSLKKPPEPLISSVFVSNAFPSKYIRDKHVIELYPG 169

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR---LEIIQDDALKVDFEKF-- 112
            G L+   L         +E D++    L +I+    +    + +++ + L    ++   
Sbjct: 170 FGLLSLRFLRKEPLSYTFVEPDKRVVKSLLNIAQSSRDNGVGVRVLRTEPLDHRLDQLHF 229

Query: 113 ------------FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
                       +       +I+N P+     LL   +         E L    +  +  
Sbjct: 230 AKQRRGLVSNADWESEPDTVVISNTPFWATNMLLLRLVDDVWNR---EGLFRAGRVPIFM 286

Query: 161 RITAQKNSPHYGRLSVLTGW---RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PIP 216
                      G+ S          +   +  +    + P     +  I   P  +  + 
Sbjct: 287 NFHLPVGCDLLGKTSFYGKLVDNFFECKEIQPVYGSFYTPKMAEGTIWIQLTPRKHFLLE 346

Query: 217 CCLESLKKITQEAFG 231
              E + KI    F 
Sbjct: 347 ESPEEIGKIIDVIFS 361


>gi|310801851|gb|EFQ36744.1| beta-ketoacyl synthase domain-containing protein [Glomerella
            graminicola M1.001]
          Length = 3070

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 29/165 (17%)

Query: 26   GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL---TLGARKVIVIEKDQQF 82
            GQ+ L++                + ++EIG G G+ T+ +L    LG       +    F
Sbjct: 1422 GQH-LVNQ--------LCHRFPNMNILEIGGGTGSATRYILDIPELGFNSYTFTDISPTF 1472

Query: 83   FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            F   ++   QH +R+     D  K+D  +     +P     +    + + +L        
Sbjct: 1473 FDKAREAFHQHKDRM-----DFRKLDITQDPASFTP----HSYDLVVASSVL------HA 1517

Query: 143  WPPFWESL--TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
             P   E++       K  G  I  +     Y R S + G      
Sbjct: 1518 TPRLVETMTNVRSLLKPGGHVIVVEATFKEYLRTSYIFGLFPDWW 1562


>gi|305662673|ref|YP_003858961.1| rRNA methylase family protein [Ignisphaera aggregans DSM 17230]
 gi|304377242|gb|ADM27081.1| rRNA methylase family protein [Ignisphaera aggregans DSM 17230]
          Length = 190

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I++ +  S       TV+++G G G +      LGA   I IE D+    I+ +ISSQ  
Sbjct: 13  IIEYLVNSINIDRDDTVLDMGCGDGRVILSFARLGANG-ICIEIDKTLCNIV-EISSQLL 70

Query: 95  N---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           N   ++ +I  D   V         +P  I   L  +I   +    
Sbjct: 71  NVKDKIRVICRDFFTVSLSDL--EPAPTIIYLYLYRSILEEIAKKL 114


>gi|298372373|ref|ZP_06982363.1| methyltransferase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275277|gb|EFI16828.1| methyltransferase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 273

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +  K+    G      V+E   G G    + L    +    +E D++   IL+   +   
Sbjct: 45  LTNKMINKLGITTSDKVVEFAPGLGFTANIALNHRPKTYTGVELDKKAAAILQKKINGQG 104

Query: 95  NRLEIIQDDA 104
            +  II  +A
Sbjct: 105 RK--IIVGNA 112


>gi|296270988|ref|YP_003653620.1| type 12 methyltransferase [Thermobispora bispora DSM 43833]
 gi|296093775|gb|ADG89727.1| Methyltransferase type 12 [Thermobispora bispora DSM 43833]
          Length = 258

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +      G  V+++G G G LT  +   GA  V+ I+  +          +++P  LE  
Sbjct: 32  DLLDPKPGERVLDLGCGTGVLTAEIAARGAH-VLGIDASRAMIEA---AMAKYPG-LEFT 86

Query: 101 QDDA 104
             DA
Sbjct: 87  VGDA 90


>gi|268326472|emb|CBH40060.1| conserved hypothetical protein, SAM-dependent methyltransferase
           type 11 family [uncultured archaeon]
          Length = 268

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQ 101
                 V+EIG GPG    +      RKV  +E  +     LK  + +      EII 
Sbjct: 60  LNSDSEVLEIGPGPGTF-VIPFASEVRKVTAVEPSEGMIGELKKNAEEKGIGNFEIIN 116


>gi|146293416|ref|YP_001183840.1| type 11 methyltransferase [Shewanella putrefaciens CN-32]
 gi|145565106|gb|ABP76041.1| Methyltransferase type 11 [Shewanella putrefaciens CN-32]
          Length = 205

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 9/137 (6%)

Query: 52  IEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKV 107
           +EIG G GN   ++    GA  V  ++ D +     +          N L     DA ++
Sbjct: 43  LEIGCGFGNGIHLIREHFGAGHVTAVDIDPEMVAAAQKRWQDSSHGLNNLHFSVADATQL 102

Query: 108 DF-EKFFNISSPIRIIANLP-YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
            F E  F+I     +  ++P +      +   +    +    +         +  R+   
Sbjct: 103 PFAEDRFDIVFNFAVFHHIPAWQTAIAEVARVLKLGGFFVIEDLYRSAICNPISRRLFEH 162

Query: 166 KNSPHYGR---LSVLTG 179
                +     L+VL  
Sbjct: 163 PQQNRFDHRELLAVLHQ 179


>gi|299469734|emb|CBN76588.1| unknown [Ectocarpus siliculosus]
          Length = 392

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNR 96
           I +++    G  V+++G G G L       GA KV  +E         + + +++     
Sbjct: 70  ITDNAELFAGKRVLDVGTGSGILALWAAKAGASKVYAVEF-TDMANHARRLVAKNGMEGV 128

Query: 97  LEIIQDDA--LKVD 108
           +E+IQ     LK+D
Sbjct: 129 VEVIQCSVEDLKLD 142


>gi|257079355|ref|ZP_05573716.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           JH1]
 gi|257087180|ref|ZP_05581541.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis D6]
 gi|294779743|ref|ZP_06745130.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           PC1.1]
 gi|307268137|ref|ZP_07549524.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX4248]
 gi|256987385|gb|EEU74687.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           JH1]
 gi|256995210|gb|EEU82512.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis D6]
 gi|294453117|gb|EFG21532.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           PC1.1]
 gi|306515527|gb|EFM84055.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX4248]
 gi|315025981|gb|EFT37913.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX2137]
 gi|329568735|gb|EGG50535.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX1467]
          Length = 315

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII--QD 102
              G TV+++G G G L+     LGA+ V   + D+      K+    +P  +++    +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAVDVHVSAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|284799454|ref|ZP_05984033.2| periplasmic glucans biosynthesis protein, MdoG [Neisseria subflava
           NJ9703]
 gi|284797915|gb|EFC53262.1| periplasmic glucans biosynthesis protein, MdoG [Neisseria subflava
           NJ9703]
          Length = 232

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++A+        TV+EIG G G  T  LL+  A KV+  + D       +  + +
Sbjct: 77  PKVVARLAQGLKLKKDETVLEIGTGSGYAT-ALLSKLAGKVVTDDID----AEQQQRAKK 131

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             + L     D ++ +     +  +P   I           +      +        + +
Sbjct: 132 VLDELGFTNVDYVQNNGLTEASQGAPFDAIYVGGAVDSVPEILK----EQLKDGGRMVVI 187

Query: 153 LFQKEVGERITAQKNSPHYG 172
           + +K V   +   +N   + 
Sbjct: 188 VGRKPVQRVLLLTRNGNEFS 207


>gi|147920523|ref|YP_685682.1| putative tRNA (1-methyladenosine) methyltransferase [uncultured
           methanogenic archaeon RC-I]
 gi|110621078|emb|CAJ36356.1| putative tRNA (1-methyladenosine) methyltransferase [uncultured
           methanogenic archaeon RC-I]
          Length = 251

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 14/172 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           +  I   +G      V++ G G G L    + + ARKVI  E  +QF    +    +   
Sbjct: 82  IGAIIAYTGLCPTDVVLDAGTGSGVLAAY-MGIIARKVITCEASEQFAANARKNMQKAGL 140

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN--IGTRLLFNWISADTWPPFWESLTL 152
           + +E+   D L+ + EK         +I     +  +        +    +   +     
Sbjct: 141 HNVEVRHADILQ-EMEKLQGEGLVFDVITLDLQDAALAVPGARKLLRTGGFLATYSP--F 197

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST 204
             Q          +       ++V            + S     PS +V  T
Sbjct: 198 FEQASAVRAAVETEGFQDIFTITVS-------EHEMEYSKRGTRPSTRVGHT 242


>gi|82703918|ref|YP_413482.1| hypothetical protein NmulC_2786 [Nitrosospira multiformis ATCC
           25196]
 gi|82411983|gb|ABB76090.1| hypothetical protein NmulC_2786 [Nitrosospira multiformis ATCC
           25196]
          Length = 504

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTL 68
           ++I        K  +GQ F+   ++ + +A       L    +++ GAG G L+   L  
Sbjct: 24  RSIAPKISQKHKSELGQ-FMTPSSVARFMASLFPPSTLQTCRLLDAGAGVGALSCAFLDR 82

Query: 69  --------GARKVIVIEKDQ----QFFPILKDISSQHPNRLEIIQDDALK-VDFEKFFNI 115
                      +    E D          L   ++       +I+ D +K V  +   + 
Sbjct: 83  WTAGKFTFDQVEATAYEIDPKLRVHLEAALHRYAADQSFSYRVIKGDFIKLVTSKSLQDY 142

Query: 116 SSPIRIIANLPY 127
                 I N PY
Sbjct: 143 PGFTHAILNPPY 154


>gi|332187932|ref|ZP_08389665.1| flagellar biosynthesis protein FlhA [Sphingomonas sp. S17]
 gi|332012093|gb|EGI54165.1| flagellar biosynthesis protein FlhA [Sphingomonas sp. S17]
          Length = 688

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 48/153 (31%), Gaps = 17/153 (11%)

Query: 30  LLDLNIL----KKIAESSGS-----LDGITVIE-IGAGPGNLTQMLLTLGARKVIVIEKD 79
           LL  NI     ++IA +        LD   ++E I    G L    L      + V+  D
Sbjct: 531 LLSENITLKEFRRIASAIAVAAQKTLDAEEIVELIRPQLGALIIQKLCGMREPLRVMTLD 590

Query: 80  QQFFPILKDISSQHPNRLEIIQDD-------ALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            Q   +L         R  +I+ D       AL    +     + P  ++      I  R
Sbjct: 591 GQLEGLLAQAMRADTGRRHVIEPDLGRRITEALTHAAQPLLAEAKPFALVVQPGVRIAMR 650

Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
            L      DT    +  +      EV   I A 
Sbjct: 651 KLLRTCLPDTPVLSFFEVPEEKAVEVVAVIGAP 683


>gi|323127350|gb|ADX24647.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 210

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           +  H +  + ++             FL D  +  KK+ +        +     G  V+++
Sbjct: 22  DSLHDIHELNVTLLGFPFT------FLTDSGVFSKKMIDFGSQALLNTLHFNKGEWVLDL 75

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L  +   +  +++ + +   + +  + Q+   + I Q +  +     F  
Sbjct: 76  GCGYGPLGISLAKVQEVEATLVDINNRAIDLAQKNARQNQVDVTIFQSNIYENVRGSF-- 133

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQK 156
                 II+N P   G +++   I     +      LT++ QK
Sbjct: 134 ----NHIISNPPIRAGKKVVHEIIEKSIDFLDDQGDLTIVIQK 172


>gi|302342555|ref|YP_003807084.1| methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
 gi|301639168|gb|ADK84490.1| Methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
          Length = 218

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLE 98
           E+         +EIG G G    M+    AR V  I+   +   + +  +         E
Sbjct: 40  EALAPRPDDAHLEIGCGGGYFLGMIQPKVAR-VAAIDHSPEMVEVARRANHDAVAAGLAE 98

Query: 99  IIQDDALKVDFEK 111
           I+Q DA ++ +  
Sbjct: 99  IVQGDAERLPWPD 111


>gi|242373914|ref|ZP_04819488.1| caffeoyl-CoA O-methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348468|gb|EES40070.1| caffeoyl-CoA O-methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 211

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPI 85
           Q  ++D   L  I +         ++EIG   G  +    ++ +  +V  IE+++     
Sbjct: 30  QVPIVDKLTLDMIKQLIRMNHTKQILEIGTAIGYSSMQFASVASDIEVTTIERNEDMLAQ 89

Query: 86  LKDISSQ--HPNRLEIIQDDALKV 107
            +    +  +  ++ +I+ DAL++
Sbjct: 90  ARHHFQEYHYEEQIRLIEGDALEM 113


>gi|159036914|ref|YP_001536167.1| methyltransferase type 11 [Salinispora arenicola CNS-205]
 gi|157915749|gb|ABV97176.1| Methyltransferase type 11 [Salinispora arenicola CNS-205]
          Length = 274

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 5/163 (3%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--S 91
            +  K+A+      G  V+++G G G     L T    +V+ I    +     ++ +  +
Sbjct: 48  RLTDKLADLLTIEAGDRVLDLGCGIGEPAIRLATAHTIEVVGISISGRQVERAQERAVSA 107

Query: 92  QHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
              +RL     DA+ + + E+ F+I   +  + ++P           +            
Sbjct: 108 GLADRLSFELADAMDLPYPEESFDIVWALESLHHMPDRAHVLRQMTRVLRPGGRVAIGDF 167

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLT--GWRTKATMMFDIS 191
            LL      E   A+ N    G LSV+    +         + 
Sbjct: 168 MLLPSAGGYEAGAARVNEASKGVLSVIGLDAYLAMIRAAGLVP 210


>gi|121604208|ref|YP_981537.1| methyltransferase small [Polaromonas naphthalenivorans CJ2]
 gi|120593177|gb|ABM36616.1| methyltransferase small [Polaromonas naphthalenivorans CJ2]
          Length = 417

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 43  SGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEI 99
           +         +IG G G L+ +L L     +V+  + D +     ++     + PN +++
Sbjct: 233 ANPGSKFVAFDIGTGTGVLSAVLALRSEVDQVVATDLDPRALECARENIYRLRLPNPVKV 292

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
           +Q D         F       I+ N P+
Sbjct: 293 MQAD--------LFPEGQASVIVCNPPW 312


>gi|315608028|ref|ZP_07883021.1| ribosomal protein L11 methyltransferase [Prevotella buccae ATCC
           33574]
 gi|315250497|gb|EFU30493.1| ribosomal protein L11 methyltransferase [Prevotella buccae ATCC
           33574]
          Length = 288

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDD 103
            LDG  +++ G G G L      +GAR+V+  + D+      +  +   H    E+   D
Sbjct: 150 DLDGKRILDCGCGTGILGIAAAKMGAREVVGYDIDEWSVENTRHNAELNHVENFEVYHGD 209

Query: 104 A 104
           A
Sbjct: 210 A 210


>gi|297529332|ref|YP_003670607.1| ribosomal protein L11 methyltransferase [Geobacillus sp. C56-T3]
 gi|297252584|gb|ADI26030.1| ribosomal protein L11 methyltransferase [Geobacillus sp. C56-T3]
          Length = 312

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQD 102
              G  VI++G G G L+     LGAR V  ++ D        L    ++  + + + Q+
Sbjct: 173 VRPGDHVIDVGTGSGILSIAAAMLGARSVRALDLDPVAVDSARLNVKLNKVQHIVTVSQN 232

Query: 103 DALKVDFEK 111
           + L    E 
Sbjct: 233 NLLDHIEEP 241


>gi|302870566|ref|YP_003839203.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302573425|gb|ADL49627.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 256

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFP 84
          LLD   ++   +      G  ++EIGAG G +T +L  L   + +V  ++KD  +  
Sbjct: 17 LLDP-TIRHELDRLEIRPGHRILEIGAGTGEITALLARLVGPSGRVTAVDKDTSYLA 72


>gi|229104114|ref|ZP_04234788.1| Methyltransferase type 11 [Bacillus cereus Rock3-28]
 gi|228679321|gb|EEL33524.1| Methyltransferase type 11 [Bacillus cereus Rock3-28]
          Length = 239

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     +      KV  IEK++      KD      
Sbjct: 25  LTKQLLAQLPLRQGADVLEIGCGTGKTAAYMTKEFGYKVTAIEKNEIMIQKAKDRWLFER 84

Query: 95  NRLEIIQDDA 104
             +++IQ DA
Sbjct: 85  LNVQLIQGDA 94


>gi|229075478|ref|ZP_04208467.1| Methyltransferase type 11 [Bacillus cereus Rock4-18]
 gi|229098027|ref|ZP_04228977.1| Methyltransferase type 11 [Bacillus cereus Rock3-29]
 gi|229117045|ref|ZP_04246427.1| Methyltransferase type 11 [Bacillus cereus Rock1-3]
 gi|228666449|gb|EEL21909.1| Methyltransferase type 11 [Bacillus cereus Rock1-3]
 gi|228685464|gb|EEL39392.1| Methyltransferase type 11 [Bacillus cereus Rock3-29]
 gi|228707727|gb|EEL59911.1| Methyltransferase type 11 [Bacillus cereus Rock4-18]
          Length = 239

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     +      KV  IEK++      KD      
Sbjct: 25  LTKQLLAQLPLRQGADVLEIGCGTGKTAAYMTKEFGYKVTAIEKNEIMIQKAKDRWLFER 84

Query: 95  NRLEIIQDDA 104
             +++IQ DA
Sbjct: 85  LNVQLIQGDA 94


>gi|225376955|ref|ZP_03754176.1| hypothetical protein ROSEINA2194_02597 [Roseburia inulinivorans DSM
           16841]
 gi|225211276|gb|EEG93630.1| hypothetical protein ROSEINA2194_02597 [Roseburia inulinivorans DSM
           16841]
          Length = 302

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + + I E        +V+EIGAG G ++  +L   A+ V  ++  ++   I  + + ++ 
Sbjct: 59  VRQNILEWYPLKKDASVLEIGAGCGAIS-GVLCRNAKHVTSVDLSKRRSLINANRNKEYD 117

Query: 95  NRLEIIQDDA 104
           N L I+  + 
Sbjct: 118 N-LTIMVGNF 126


>gi|329941031|ref|ZP_08290311.1| methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329300325|gb|EGG44223.1| methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 249

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-- 94
           ++IA        + V+++G G G     LL  G  +V  +E+D +      +  +  P  
Sbjct: 7   EQIAGRFPVGQRLRVLDVGMGQGTQALRLLRAG-HRVTGLERDARMLSAAHEALAAEPEG 65

Query: 95  --NRLEIIQDD 103
              R+ II+ D
Sbjct: 66  VRERMRIIEGD 76


>gi|300869923|ref|YP_003784794.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
           95/1000]
 gi|300687622|gb|ADK30293.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
           95/1000]
          Length = 194

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+++G  PG+ +Q +L    +   V+  D     IL +  S    R + I  D 
Sbjct: 35  IKSSDNVLDVGCSPGSFSQYMLNKIIKTGSVVGVD-----ILPNNFSH--QRFKFILGDI 87

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            ++D   F NI   + +   +P     R   +  S       +
Sbjct: 88  KEMDASTFDNIEFDVVVSDAMPNTTSDRETNHLRSIGLCEKIF 130


>gi|261393222|emb|CAX50841.1| protein-L-isoaspartate O-methyltransferase (protein-beta-aspartate
           methyltransferase; PIMT; protein L-isoaspartyl
           methyltransferase; L-isoaspartyl protein carboxyl
           methyltransferase) [Neisseria meningitidis 8013]
          Length = 218

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             ++ ++A+        TV+EIG G G  T  LL   A +V+  + D +
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLASRVVSDDIDAE 110


>gi|256061496|ref|ZP_05451640.1| S-adenosyl-methyltransferase MraW [Brucella neotomae 5K33]
 gi|261325503|ref|ZP_05964700.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           neotomae 5K33]
 gi|261301483|gb|EEY04980.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           neotomae 5K33]
          Length = 346

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++     G  +++   G G  T+ +L  GA  VI I++D       + +  +
Sbjct: 20  PVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDRDPTAIEAGRAMEKE 78

Query: 93  HPNRLEIIQDDALKVD 108
            P RL +++     +D
Sbjct: 79  FPGRLILVESRFSALD 94


>gi|242398949|ref|YP_002994373.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus
           sibiricus MM 739]
 gi|242265342|gb|ACS90024.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus
           sibiricus MM 739]
          Length = 249

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +++I +     +   ++++  G G  T  L   G  +V+ ++  ++   + K  + +   
Sbjct: 30  VEEIFKGDAKREVKKILDLACGTGIPTLELAKRG-YEVVGMDLHEEMLEVAKRKAKREGL 88

Query: 96  RLEIIQDDALKVDFEKFFN 114
            +E IQ DAL+V+FE+ F+
Sbjct: 89  TIEFIQGDALEVNFEQEFD 107


>gi|227827056|ref|YP_002828835.1| methyltransferase type 11 [Sulfolobus islandicus M.14.25]
 gi|229584224|ref|YP_002842725.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.27]
 gi|227458851|gb|ACP37537.1| Methyltransferase type 11 [Sulfolobus islandicus M.14.25]
 gi|228019273|gb|ACP54680.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.27]
          Length = 189

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 30 LLDL--NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          L+     IL +  +     +  TV+++G GPG  T +L  +  + V  ++ D++    LK
Sbjct: 24 LVSPPNRILSRFVKY--LKEDYTVVDLGCGPGFFTTILARI-VKTVYAVDPDERAIRRLK 80

Query: 88 DISSQ 92
          +   +
Sbjct: 81 EKVQK 85


>gi|222151580|ref|YP_002560736.1| hypothetical protein MCCL_1333 [Macrococcus caseolyticus JCSC5402]
 gi|222120705|dbj|BAH18040.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 244

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           +I E   +L   T+++IG G G L Q +L     ++  I+         K+        +
Sbjct: 32  RIKELLPNLYNKTILDIGCGMGQLVQYMLEQSPIQITGIDISSNMIQKAKENIQ--DQHV 89

Query: 98  EIIQDDALKVDFEKFFNI 115
             + +D ++ D    +++
Sbjct: 90  TFLNNDFMEFDSVADYDV 107


>gi|168701706|ref|ZP_02733983.1| hypothetical protein GobsU_19436 [Gemmata obscuriglobus UQM 2246]
          Length = 274

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           +I+ ++A+ +       + + G G    L + +  LGA+K I I+ D +     ++ + +
Sbjct: 123 DIVDEMAKMAKVNKNDVIFDPGCGDAVMLIRPMKLLGAKKGIGIDIDPKMVKKAQEKAME 182

Query: 93  H--PNRLEIIQDDAL-KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
                ++ I + D L + D       S  +  I +        +L   +   T
Sbjct: 183 EGVAEKVVIKEGDILNEKDMAIASEASVVLIYIGDDLGARMAPVLQKLLKPGT 235


>gi|257453811|ref|ZP_05619089.1| cyclopropane-fatty-acyl-phospholipid synthase [Enhydrobacter
           aerosaccus SK60]
 gi|257448738|gb|EEV23703.1| cyclopropane-fatty-acyl-phospholipid synthase [Enhydrobacter
           aerosaccus SK60]
          Length = 490

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQH- 93
           L KI E +       VIEIG G G          G R       D Q+    + I++ + 
Sbjct: 259 LAKICELAELTADDHVIEIGTGWGGFAIYAATKYGCRVTTTTISDAQYEEANRRIAAANL 318

Query: 94  PNRLEIIQDD 103
            +++ +++ D
Sbjct: 319 TDKITLLKQD 328


>gi|229496584|ref|ZP_04390298.1| SmtA protein [Porphyromonas endodontalis ATCC 35406]
 gi|229316481|gb|EEN82400.1| SmtA protein [Porphyromonas endodontalis ATCC 35406]
          Length = 256

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 12/118 (10%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK 106
            ++++G G G +  ML     R +V  +E +          ++Q P  +R+ ++Q D   
Sbjct: 55  RILDVGCGTGLIALMLAQRYPRAEVTALEIEPTAVERATYNAAQSPFSSRVRVVQADFST 114

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
               +         I++N PY   T       +         ++  L  KEV  R +A
Sbjct: 115 WQAPQAL----YDLIVSNPPYYKNT-----LQARSEVRHTARAIGFLSPKEVLRRASA 163


>gi|270308005|ref|YP_003330063.1| methyltransferase [Dehalococcoides sp. VS]
 gi|270153897|gb|ACZ61735.1| methyltransferase [Dehalococcoides sp. VS]
          Length = 293

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           IAE     DG  V + G GPG  T  L   GA  V  I+   +     ++ +S H   + 
Sbjct: 72  IAEYFRLGDGKLVCDFGCGPGLYTSRLAAAGAD-VTGIDFSSRSIGYAREFASAHQLDIH 130

Query: 99  IIQDDALKVDFEKFFNI 115
            I+ + L+    K F++
Sbjct: 131 YIEQNYLEFAAPKKFDL 147


>gi|147677824|ref|YP_001212039.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum
           SI]
 gi|146273921|dbj|BAF59670.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum
           SI]
          Length = 194

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 36  LKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           LKKI E      +   TV+++GAG G L +  L  G+R+ I  +       +LK + ++ 
Sbjct: 7   LKKIQELIDIADVKDKTVLDVGAGTGILVEAGLAAGSRQWIACDL---SLEMLKILEAKF 63

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            N+  +   D    D +     +     + +LP   G+  +   I  + +P F +    L
Sbjct: 64  HNKFNL-NGDYSSADRKLLLLHAD----VHSLPLEDGS--VDRVICHNAFPHFHQPKIAL 116

Query: 154 FQ 155
           +Q
Sbjct: 117 YQ 118


>gi|118102082|ref|XP_001232148.1| PREDICTED: similar to CGI-41 protein [Gallus gallus]
          Length = 434

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 16/97 (16%)

Query: 7   SHSLKTILSHYKIIPKKY-----MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           S  L  +L  + + PKK      +G        +L+++++++G      V+++GAG G+L
Sbjct: 163 SPHLHPLLRRH-VKPKKQHEIRCLG-------KVLQRLSQATGC---DRVVDVGAGQGHL 211

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           ++ L       V  +E D +   + +    +    LE
Sbjct: 212 SRFLAFSLGLSVTAVEGDGRLVSLAEHFDQELLRELE 248


>gi|22535505|dbj|BAC10678.1| putative D-glucose O-methyltransferase [Lechevalieria
           aerocolonigenes]
          Length = 283

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDIS 90
             +  ++        G  V+++G G G     L T    +V  I   +        +  +
Sbjct: 57  DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATA 116

Query: 91  SQHPNRLEIIQDDALKVDFEK 111
           +   NR+     DA+ + FE 
Sbjct: 117 AGLANRVTFSYADAMDLPFED 137


>gi|50913487|ref|YP_059459.1| adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|50902561|gb|AAT86276.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 332

 Score = 39.8 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLE 98
           E     D + V+EIG+G GNL Q LL   ++ +  + IE D     +   I+    +   
Sbjct: 118 EQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSSAH 177

Query: 99  IIQDDALK 106
            +Q+DA++
Sbjct: 178 FVQEDAVR 185


>gi|332982765|ref|YP_004464206.1| RNA methylase [Mahella australiensis 50-1 BON]
 gi|332700443|gb|AEE97384.1| RNA methylase [Mahella australiensis 50-1 BON]
          Length = 252

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           A  +    G  V ++G G G +  +L     A K+  +E   +   + +     +   +R
Sbjct: 38  ANFARIKPGDIVADLGTGSGVIPLLLSCKTAASKIYGLEIQHEMADMAQRSVRLNDLESR 97

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++II+ D  K        +S    +I+N PY
Sbjct: 98  VDIIEGDIRKA--GDIIGMSLVDAVISNPPY 126


>gi|328869392|gb|EGG17770.1| cyclopropane fatty acid synthase [Dictyostelium fasciculatum]
          Length = 466

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI--EKDQQFFPILKDISS 91
           N ++K+ + +       ++EIG+G G L    +     +V  I    +Q     L+   +
Sbjct: 194 NKIRKLIDKANLKPHHHLLEIGSGWGALAIEAVRRTGCRVTTISLSIEQVNLAKLRVKQA 253

Query: 92  QHPNRLEIIQDD 103
              +R++++  D
Sbjct: 254 GLEDRIDVVLID 265


>gi|302023218|ref|ZP_07248429.1| hypothetical protein Ssui0_00638 [Streptococcus suis 05HAS68]
          Length = 280

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQ 92
           IL  + +       +TV+EIG+G GNL Q +L    +++  + IE D     +   I+  
Sbjct: 97  ILSFLVDQLMPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADV 156

Query: 93  HPNRLEIIQDDALK 106
               +   Q DA++
Sbjct: 157 MQADISFAQGDAVR 170


>gi|268611959|ref|ZP_06145686.1| adenine/cytosine DNA methyltransferase [Ruminococcus flavefaciens
           FD-1]
          Length = 840

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 15/110 (13%)

Query: 29  FLLDLNILKKIAESSGSLDGITV--IEIGAGPGNLTQMLLTLGARK----VIVIEKDQQF 82
           F  D +IL +I +    +D   V  +E   G GN    ++   A      + V++ D   
Sbjct: 450 FFTDKSILNEIMKYLPDIDKDVVRILEPSVGTGNFVPFIIKKYAAVKSIIIDVVDIDPDV 509

Query: 83  FPILKDISSQH--PNRLEI--IQDDALKVDFEKFFNISSPIRIIANLPYN 128
             +LK I S+      + I  I DD L   F + +++     +I N P+N
Sbjct: 510 ISVLKYIISKFRLAANVTINFITDDFLLHKFNERYDL-----VIGNPPFN 554


>gi|256811097|ref|YP_003128466.1| tRNA (adenine-N(1)-)-methyltransferase [Methanocaldococcus fervens
           AG86]
 gi|256794297|gb|ACV24966.1| tRNA (adenine-N(1)-)-methyltransferase [Methanocaldococcus fervens
           AG86]
          Length = 275

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD 88
           I   +G  +G  V+E G G G LT  L     +  KVI  +   +F  + + 
Sbjct: 79  IIARAGIREGEVVVEAGTGSGALTMYLSNAVGKTGKVITYDIRPEFAKVARK 130


>gi|153009066|ref|YP_001370281.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC
           49188]
 gi|262824676|sp|A6WZP8|RSMH_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151560954|gb|ABS14452.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC
           49188]
          Length = 347

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++   + G  +++   G G  T+ +L  GA  VI I++D       + +  Q
Sbjct: 21  PVLIAEVIDALKPVSGAVIVDGTFGAGGYTRRILEAGAD-VIAIDRDPTAIEAGRAMEKQ 79

Query: 93  HPNRLEIIQDDALKVD 108
            P RL++++     +D
Sbjct: 80  FPGRLDLVESRFSALD 95


>gi|9715734|emb|CAC01604.1| peptide synthetase [Anabaena circinalis 90]
          Length = 5060

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 45   SLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
             +    V+EIG G    L++  +  GA K+  IE++++     +    +    +++ +I 
Sbjct: 3133 LVKDKIVVEIGTGKDAILSRFCVQGGANKIYAIERNEETCRQARACIEKLGLADKITVIH 3192

Query: 102  DDALKVDFEKFFNIS 116
             DA  VD  +  ++ 
Sbjct: 3193 GDATLVDIPELADVC 3207


>gi|148257437|ref|YP_001242022.1| hypothetical protein BBta_6193 [Bradyrhizobium sp. BTAi1]
 gi|146409610|gb|ABQ38116.1| hypothetical protein BBta_6193 [Bradyrhizobium sp. BTAi1]
          Length = 204

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 33/92 (35%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D     ++   + +     +IEIG G   L   LL  G R + V++  +      +    
Sbjct: 26  DPATSLRLIRDAVAAPAARIIEIGGGTSRLVDALLAAGYRALTVLDISEAALATTRHRLG 85

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
              + +  I++D      +  +++     +  
Sbjct: 86  AAADDVTWIREDVTTWMPDATYDLWHDRAVFH 117


>gi|238896026|ref|YP_002920762.1| putative enzyme [Klebsiella pneumoniae NTUH-K2044]
 gi|238548344|dbj|BAH64695.1| putative enzyme [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 252

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKD--ISSQHPNRLE 98
           +       V++IGAG G L  ML       V    +E D++     ++  ++S   +R+E
Sbjct: 47  APIAGVKHVLDIGAGSGLLALMLAQRTGDDVHVEAVELDEEAAAQARENALASPWASRIE 106

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + Q D       +         II+N P+
Sbjct: 107 VWQADI---HQWQPSQTRRYELIISNPPF 132


>gi|239917686|ref|YP_002957244.1| tRNA (adenine-58-N(1)-) methyltransferase [Micrococcus luteus NCTC
           2665]
 gi|239838893|gb|ACS30690.1| tRNA (adenine-58-N(1)-) methyltransferase [Micrococcus luteus NCTC
           2665]
          Length = 354

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I + +    G  V+E G G G L+  LL       ++   E+  +F  + +      
Sbjct: 95  AAQIVQQADIFPGAVVVEAGVGSGALSMSLLRAVGDHGRLHSYERRPEFADVARANVEAF 154

Query: 94  PNRLE----IIQDDALKVDFEKFFNISSPIRII 122
                    +   DA + +  K     S  R++
Sbjct: 155 FGAEHPAWSVHLGDAQE-EMPKVHEPGSVDRVV 186


>gi|169631580|ref|YP_001705229.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium abscessus
           ATCC 19977]
 gi|169243547|emb|CAM64575.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium abscessus]
          Length = 265

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 51  VIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDDALKV 107
           ++EIG G G  T  + L      V+ +E   +    +L  I  +    + +I+ DAL V
Sbjct: 94  ILEIGCGTGTSTAAMALQEPDFDVLAVEVYRKGLAQLLSAIDREGIENIRLIRGDALDV 152


>gi|149174356|ref|ZP_01852983.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Planctomyces maris DSM 8797]
 gi|148846901|gb|EDL61237.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Planctomyces maris DSM 8797]
          Length = 367

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 53/137 (38%), Gaps = 8/137 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVI--EKDQQFFPILKDISSQHPNRL 97
           + +   DG++++E+G G G+LT  L       ++  +     Q+ +   + ++    +R+
Sbjct: 117 QHADIQDGMSILELGCGWGSLTLWLAENYPDSRITAVSNSHSQREYIEQQAVARGVADRI 176

Query: 98  EIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           ++I  D  +   E+ ++ + S         Y    + +  W++          + +   +
Sbjct: 177 QVITADMNEFIPEETYDRVVSVEMFEHMRNYEQLLQRIAGWLNEQGKL----LIHVFCHR 232

Query: 157 EVGERITAQKNSPHYGR 173
           E       Q      GR
Sbjct: 233 EFAYEFNDQNADDWMGR 249


>gi|108760584|ref|YP_628781.1| hypothetical protein MXAN_0512 [Myxococcus xanthus DK 1622]
 gi|108464464|gb|ABF89649.1| hypothetical protein MXAN_0512 [Myxococcus xanthus DK 1622]
          Length = 254

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP 94
            +   + G   G  + ++GAG G  TQ L      A +V+  + + +    L+   S+  
Sbjct: 100 ARFIAALGITPGQRIADVGAGLGYFTQRLSEAVGPAGQVVATDINDEALKRLRARMSERK 159

Query: 95  NRL 97
           N +
Sbjct: 160 NVV 162


>gi|73749101|ref|YP_308340.1| SAM-dependent methyltransferase [Dehalococcoides sp. CBDB1]
 gi|289433077|ref|YP_003462950.1| methyltransferase type 11 [Dehalococcoides sp. GT]
 gi|73660817|emb|CAI83424.1| SAM-dependent methyltransferase [Dehalococcoides sp. CBDB1]
 gi|288946797|gb|ADC74494.1| Methyltransferase type 11 [Dehalococcoides sp. GT]
          Length = 206

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 37  KKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +I E++             +IGAG G LT  LL    R VI ++   Q   +L+ I S+
Sbjct: 24  DRIREAALEATDVKPNSIAADIGAGTGYLTTGLLQKNCR-VIAVD---QSAAMLEKIKSK 79

Query: 93  HPNR-LEIIQDD 103
              R +  +Q D
Sbjct: 80  FGVRNVSCLQAD 91


>gi|462648|sp|P33563|MTBB_BACSU RecName: Full=Modification methylase BsuBI; Short=M.BsuBI; AltName:
           Full=Adenine-specific methyltransferase BsuBI
 gi|143054|gb|AAA18169.1| modification methyltransferase [Bacillus subtilis]
          Length = 501

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL------GARKVIVIEKDQQFFPILKDISSQHPNRL 97
             L+   V++ GAG G+LT   L        G   + ++E D+   P L +  +   + +
Sbjct: 45  DKLNNAKVLDAGAGIGSLTSAFLARLISENIGKADLHLLEIDEMLEPYLSETLALFKDYI 104

Query: 98  E----IIQDDALKVDFEKFFNISS 117
           E    II DD ++       +  S
Sbjct: 105 EINSQIIIDDFIEWAAYSLLDEES 128


>gi|83952057|ref|ZP_00960789.1| protein-L-isoaspartate O-methyltransferase [Roseovarius nubinhibens
           ISM]
 gi|83837063|gb|EAP76360.1| protein-L-isoaspartate O-methyltransferase [Roseovarius nubinhibens
           ISM]
          Length = 217

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++ ++ ++       TV+EIG G G     +L+  AR+V  +++ Q+      DI   
Sbjct: 67  PSVVGRMTQALAVSPRDTVLEIGTGSGY-QAAILSHLARRVYTVDRHQRLVAEANDIFRD 125

Query: 93  HP 94
             
Sbjct: 126 LD 127


>gi|331695388|ref|YP_004331627.1| type 12 methyltransferase [Pseudonocardia dioxanivorans CB1190]
 gi|326950077|gb|AEA23774.1| Methyltransferase type 12 [Pseudonocardia dioxanivorans CB1190]
          Length = 255

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDI 89
           D   ++    + G   G+  +E+GAG G++ + L        +V  ++ D +F       
Sbjct: 26  DPGTIRH-LTALGVGPGMRCLEVGAGGGSIARWLADRVGPGGEVAAVDIDVRF------- 77

Query: 90  SSQHPNRLEIIQDDA 104
            S  P  + + + D 
Sbjct: 78  LSDLPPPVSVHECDV 92


>gi|295399228|ref|ZP_06809210.1| ribosomal protein L11 methyltransferase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110170|ref|YP_003988486.1| ribosomal protein L11 methyltransferase [Geobacillus sp. Y4.1MC1]
 gi|294978694|gb|EFG54290.1| ribosomal protein L11 methyltransferase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215271|gb|ADP73875.1| ribosomal protein L11 methyltransferase [Geobacillus sp. Y4.1MC1]
          Length = 315

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 19/107 (17%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK----------------- 87
              G TVI++G G G L+     LGA+ V  ++ D       +                 
Sbjct: 176 VKPGDTVIDVGTGSGILSIAAAMLGAKAVRALDLDPVAVDSARLNVKLNKVQHIVTVSQN 235

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           ++      R  +I  + L     +F + +   R++ N  Y I + ++
Sbjct: 236 NLLDHIEERANVIVANILAEIILRFADDA--YRLLENNGYFITSGII 280


>gi|237718552|ref|ZP_04549033.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293373068|ref|ZP_06619436.1| methyltransferase small domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|229452012|gb|EEO57803.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292631954|gb|EFF50564.1| methyltransferase small domain protein [Bacteroides ovatus SD CMC
           3f]
          Length = 236

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 50  TVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDAL 105
            +++IG G G +  ML+        ++ +E D+      ++  I S    R+E++Q D  
Sbjct: 40  RILDIGTGTGLVALMLVQRSLPDANIVALEIDEAAVGQARENIIRSPWKERVEVVQADFR 99

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGT 131
           K      F++     I++N PY + +
Sbjct: 100 KYRSSDKFDV-----IVSNPPYFVDS 120


>gi|257125089|ref|YP_003163203.1| O-methyltransferase-like protein [Leptotrichia buccalis C-1013-b]
 gi|257049028|gb|ACV38212.1| O-methyltransferase-like protein [Leptotrichia buccalis C-1013-b]
          Length = 220

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
            +  T++EIGAG G +T +L  +    K+  +E  +  F ILK     +    ++  I +
Sbjct: 45  KEKKTILEIGAGQGIITLLLSKIEIFEKIFAVEIQKDIFEILKKNIKINNLEEKITSINE 104

Query: 103 DALKVDFEKFFNISSP 118
           D   +  E  F  S+P
Sbjct: 105 DIKTIKGEYDFIFSNP 120


>gi|150403386|ref|YP_001330680.1| type 11 methyltransferase [Methanococcus maripaludis C7]
 gi|150034416|gb|ABR66529.1| Methyltransferase type 11 [Methanococcus maripaludis C7]
          Length = 280

 Score = 39.8 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +S        V++IG+GPG +   +     + V  +E       ++++ ++++     
Sbjct: 56  IIDSLPLSPDSRVLDIGSGPGTIAVPVAGR-VKHVTAVEPSHGMADVMEEYAAENG---- 110

Query: 99  IIQDDALKVDFEKF---FNISSPIRII 122
           +   D ++  +E+     ++  P  I+
Sbjct: 111 VSNLDIVRKRWEELDPSSDLQGPYDIV 137


>gi|315187201|gb|EFU20958.1| tRNA (guanine-N(7)-)-methyltransferase [Spirochaeta thermophila DSM
           6578]
          Length = 229

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 35/182 (19%)

Query: 37  KKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARK-VIVIEK-DQQFFPILKDISSQH 93
           ++   S         V+EIG G G+ T  L         + +E        +L++I ++ 
Sbjct: 40  RRPVASLFPRPFDRYVLEIGFGMGDATVALAERFPGTGFLGVEIHSPGVGKVLREIHTKG 99

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            + L ++Q DA  + FE+     S   +              +    D WP        +
Sbjct: 100 LDNLRVVQADAFHL-FEQLLLPDSFDGV--------------HIFFPDPWPKRKHHKRRM 144

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI---------------SPHVFFPS 198
            Q    + +           L + T W   A+ +  +                  V+ P 
Sbjct: 145 IQSPFLDIL--HPFMKEGAYLYITTDWEEYASQILQVCSSHPAFVNEYGGFAPRQVWRPV 202

Query: 199 PK 200
            K
Sbjct: 203 TK 204


>gi|300087430|ref|YP_003757952.1| methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527163|gb|ADJ25631.1| Methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 191

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILK 87
           L +L I + + +  G   G+T I++GAG G  T+ L  L   A +V  ++   +   +LK
Sbjct: 21  LAELRIPELLCDIGGVEAGMTCIDLGAGTGTFTRPLGVLVGSAGRVYAVDASPELLELLK 80

Query: 88  DISSQHPNRLEIIQDDA 104
             + + P ++ ++  D 
Sbjct: 81  --AKKPPEQVTVVTADF 95


>gi|288962263|ref|YP_003452558.1| cyclopropane-fatty-acyl-phospholipid synthase [Azospirillum sp.
           B510]
 gi|288914529|dbj|BAI76014.1| cyclopropane-fatty-acyl-phospholipid synthase [Azospirillum sp.
           B510]
          Length = 416

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 37  KKIAESSGSLD---GITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            KIA ++  L    G  V+EIG G G + + L       V+ +
Sbjct: 182 AKIARAADLLRLGVGDRVLEIGCGWGGMAEHLAARRGAAVVGL 224


>gi|302880051|ref|YP_003848615.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Gallionella capsiferriformans ES-2]
 gi|302582840|gb|ADL56851.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Gallionella capsiferriformans ES-2]
          Length = 215

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEI 99
                   V+E+G G G LT  LL+  A  V  +E      P L +I+  H      + +
Sbjct: 74  LHIGRSDKVLEVGTGSGYLT-ALLSAFAGHVTSVEI----VPELSEIARTHLLHRENVTL 128

Query: 100 IQDDALKVDFEKFFNI 115
              DA      + +++
Sbjct: 129 AVGDASHGWGSEKYDV 144


>gi|251782462|ref|YP_002996764.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391091|dbj|BAH81550.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 210

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           +  H +  + ++             FL D  +  KK+ +        +     G  V+++
Sbjct: 22  DSLHDIHELNVTLLGFPFT------FLTDSGVFSKKMIDFGSQVLLNTLHFNKGERVLDL 75

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L  +   +  +++ + +   + +  + Q+   + I Q +  +     F  
Sbjct: 76  GCGYGPLGISLAKVQEVEATLVDINNRAIDLAQKNARQNQVDVTIFQSNIYENVRGSF-- 133

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQK 156
                 II+N P   G +++   I     +      LT++ QK
Sbjct: 134 ----NHIISNPPIRAGKKVVHEIIEKSIDFLDDQGDLTIVIQK 172


>gi|260945757|ref|XP_002617176.1| hypothetical protein CLUG_02620 [Clavispora lusitaniae ATCC 42720]
 gi|238849030|gb|EEQ38494.1| hypothetical protein CLUG_02620 [Clavispora lusitaniae ATCC 42720]
          Length = 499

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNR 96
           I +       + ++ +G G G L QM++        +I +EK+ +    LK+     P R
Sbjct: 246 IQDLHQKRSNLKILVVGPGRGPLLQMVMRYTKNDDAIIAVEKNDKCIDTLKEKIRNTP-R 304

Query: 97  LEIIQDDALKVDFEKF 112
           + ++  D   +  E +
Sbjct: 305 VTLVHGDIRNLTNETY 320


>gi|88602598|ref|YP_502776.1| ribosomal RNA adenine dimethylase [Methanospirillum hungatei JF-1]
 gi|88188060|gb|ABD41057.1| ribosomal RNA adenine dimethylase [Methanospirillum hungatei JF-1]
          Length = 279

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHP 94
            +KI           +++IGAGPG L+  +       V  +E       +L++ +  +  
Sbjct: 53  TEKIISQLSFSPEFRILDIGAGPGTLSIPISG-KVHHVTAVEPAIGMAELLRERTKTETK 111

Query: 95  NRLEIIQ 101
             ++I+Q
Sbjct: 112 GNIDIVQ 118


>gi|77362367|ref|YP_341941.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76877278|emb|CAI89495.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 420

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 45/150 (30%), Gaps = 17/150 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L++I E      G +VIEIG G G       T     V       +    ++    Q   
Sbjct: 179 LQRICEQVELQKGDSVIEIGTGWGAFAIYAATHYDCYVTTTTISDEQHDYVEQKVKQLGL 238

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
             +I     LK+D+         +  I               +  D  P F+   + L +
Sbjct: 239 EHKITL---LKLDYRSLKGQYDKLVSIEM----------IEAVGHDYLPSFFTQCSALLK 285

Query: 156 KEVGERITA----QKNSPHYGRLSVLTGWR 181
            +    I A     +   HY + S      
Sbjct: 286 DDGAMLIQAITIGDQRYKHYLKNSDFIQQY 315


>gi|307718845|ref|YP_003874377.1| tRNA (guanine-N(7)-)-methyltransferase [Spirochaeta thermophila DSM
           6192]
 gi|306532570|gb|ADN02104.1| tRNA (guanine-N(7)-)-methyltransferase [Spirochaeta thermophila DSM
           6192]
          Length = 275

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 9/169 (5%)

Query: 37  KKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARK-VIVIEK-DQQFFPILKDISSQH 93
           ++   S         V+EIG G G+ T  L         + +E        +L++I ++ 
Sbjct: 86  RRPVASLFPRPFDRYVLEIGFGMGDATVALAERFPGTGFLGVEIHSPGVGKVLREIHTKG 145

Query: 94  PNRLEIIQDD-ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
            + L ++Q D  L  +     +    + I    P+          I +    PF + L  
Sbjct: 146 LDNLRVVQADVFLVFEQLLLPDSFDGVHIFFPDPWPKRKHHKRRMIQS----PFLDILHP 201

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKA-TMMFDISPHVFFPSPK 200
             ++     IT          L V +                V+ P  K
Sbjct: 202 FMKEGAYLYITTDWEDYASQILQVCSSHPAFVNEYGGFAPRQVWRPVTK 250


>gi|302660977|ref|XP_003022161.1| hybrid PKS-NRPS enzyme, putative [Trichophyton verrucosum HKI 0517]
 gi|291186094|gb|EFE41543.1| hybrid PKS-NRPS enzyme, putative [Trichophyton verrucosum HKI 0517]
          Length = 3852

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 34   NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEKDQQFFPILKDIS 90
            N+  +I   +     + +IEIGAG G  T+M+L    +        +    FF   ++  
Sbjct: 1381 NLAAQI---AYRYPRMNIIEIGAGTGGSTRMILPTLGKAFSTYTFTDISSGFFEAAEERF 1437

Query: 91   SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL------LFNWISADTWP 144
            SQ+ +R+     D  K   E+ F       ++A+   ++G  +      +   +    W 
Sbjct: 1438 SQYADRMIFKTLDMEKDLSEQGFTEGHYDMVLASNALHVGPDIDLTLSNVRKLVKPGGWL 1497

Query: 145  PFWESLTLLFQKEVGERITAQKNS 168
               E  T       G  ++     
Sbjct: 1498 INMEVATYFPSLREGFSMSGFPGW 1521


>gi|281413822|ref|ZP_06245564.1| tRNA (adenine-58-N(1)-) methyltransferase [Micrococcus luteus NCTC
           2665]
          Length = 311

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I + +    G  V+E G G G L+  LL       ++   E+  +F  + +      
Sbjct: 95  AAQIVQQADIFPGAVVVEAGVGSGALSMSLLRAVGDHGRLHSYERRPEFADVARANVEAF 154

Query: 94  PNRLE----IIQDDALKVDFEKFFNISSPIRII 122
                    +   DA + +  K     S  R++
Sbjct: 155 FGAEHPAWSVHLGDAQE-EMPKVHEPGSVDRVV 186


>gi|270159521|ref|ZP_06188177.1| methyltransferase domain family protein [Legionella longbeachae
           D-4968]
 gi|289165678|ref|YP_003455816.1| methyltransferase [Legionella longbeachae NSW150]
 gi|269987860|gb|EEZ94115.1| methyltransferase domain family protein [Legionella longbeachae
           D-4968]
 gi|288858851|emb|CBJ12770.1| putative methyltransferase [Legionella longbeachae NSW150]
          Length = 258

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           +         +++IG G G+ ++ +L        + ++  +    + +     +PN  ++
Sbjct: 27  KYLDIKPTDHILDIGCGNGSFSRKILNQFPQNHFLGVDASENMLALARKELVDYPNA-KL 85

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
              DAL + F   F+       +    + I    L
Sbjct: 86  QHADALTLSFTNEFDYVVSFWCLQWCAFAIEKAFL 120


>gi|257386959|ref|YP_003176732.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257169266|gb|ACV47025.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 262

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           F+ D      + +      G  ++++G G G+LT  +         V+  D     I + 
Sbjct: 17  FVTDYG--DSVVDLLDPRPGERILDLGCGTGHLTATVADAVGSAGDVLGIDASSEMIRQA 74

Query: 89  ISSQHPNRLEIIQDDALKVD 108
            ++    R + +   A + D
Sbjct: 75  RAAYPDLRFDCVDATAFETD 94


>gi|254473313|ref|ZP_05086710.1| Tellurite resistance protein TehB [Pseudovibrio sp. JE062]
 gi|211957429|gb|EEA92632.1| Tellurite resistance protein TehB [Pseudovibrio sp. JE062]
          Length = 167

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           T++++GAG G     L   G   VI ++  +     L++ +      +EI+  DAL    
Sbjct: 35  TILDLGAGQGRDAIFLAKRG-YNVIAVDSSKVGLNQLQERAEAENLPIEIVHADALGYTP 93

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
            +  +     R    LP N   +LL   +  
Sbjct: 94  PQDLDAIVADRFFHELPNNARVKLLQRMLGY 124


>gi|167825439|ref|ZP_02456910.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia pseudomallei 9]
 gi|167895511|ref|ZP_02482913.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia pseudomallei
           7894]
 gi|167924604|ref|ZP_02511695.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia pseudomallei
           BCC215]
 gi|226193802|ref|ZP_03789404.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           Pakistan 9]
 gi|225934107|gb|EEH30092.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           Pakistan 9]
          Length = 265

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 83  DAIFDRRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 142

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V  +                    +    +    D W         L Q   
Sbjct: 143 IIQHDAVEVLAQMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 187

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A      Y   +       +
Sbjct: 188 VAQLAAHLKPGAYLHCATDWQNYAE 212


>gi|22536351|ref|NP_687202.1| hypothetical protein SAG0167 [Streptococcus agalactiae 2603V/R]
 gi|76788668|ref|YP_328901.1| hypothetical protein SAK_0233 [Streptococcus agalactiae A909]
 gi|76798828|ref|ZP_00781040.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
 gi|77406344|ref|ZP_00783407.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
 gi|77410978|ref|ZP_00787334.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
 gi|22533176|gb|AAM99074.1|AE014199_10 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
 gi|76563725|gb|ABA46309.1| conserved hypothetical protein [Streptococcus agalactiae A909]
 gi|76585835|gb|EAO62381.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
 gi|77163033|gb|EAO73988.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
 gi|77175049|gb|EAO77855.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
          Length = 324

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            + + V+EIG+G GNL Q LL   ++++  + IE D     +   I+    +  + IQ+D
Sbjct: 108 QETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSSAQFIQED 167

Query: 104 ALK 106
           A++
Sbjct: 168 AVR 170


>gi|256395168|ref|YP_003116732.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Catenulispora acidiphila DSM 44928]
 gi|256361394|gb|ACU74891.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Catenulispora acidiphila DSM 44928]
          Length = 397

 Score = 39.8 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 35  ILKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           I K    +      G   G  V +IGAG G++       GA  V+ +E+D +    ++  
Sbjct: 232 ITKSEVRALALAKLGPRPGRLVWDIGAGSGSVGVECARFGA-AVVAVERDAESCDRIRAN 290

Query: 90  SSQHPNRLEIIQDDA 104
           ++ H   +E++  DA
Sbjct: 291 AAAHGVAVEVMTADA 305


>gi|295110608|emb|CBL24561.1| Dimethyladenosine transferase (rRNA methylation) [Ruminococcus
           obeum A2-162]
          Length = 727

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 15/154 (9%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +F    +I + I           V+EIG+G G +T  L    A++V  IE   +    + 
Sbjct: 56  HF---SHIRENILSWLPFTGEENVLEIGSGCGAVTGALCK-KAKQVTCIEL-SRKRSHIN 110

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG-----TRLL--FNWISA 140
               ++ + L+I+  +   ++          I +I    Y        T  +     IS 
Sbjct: 111 AWRHRNCDNLKILMGNFQDIEK-TLTEKYDYITLIGVFEYGEAYIQSDTPYVDFLKIISK 169

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
              P     + L  +  +G +  A     H+G L
Sbjct: 170 HLKPDG--KIVLAIENRLGLKYWAGCTEDHFGTL 201


>gi|254563593|ref|YP_003070688.1| L-isoaspartate O-methyltransferase [Methylobacterium extorquens
          DM4]
 gi|254270871|emb|CAX26876.1| L-isoaspartate O-methyltransferase (protein beta-aspartate
          methyltransferase, protein L-isoaspartyl
          methyltransferase, L-isoaspartyl protein carboxyl
          methyltransferase) [Methylobacterium extorquens DM4]
          Length = 206

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            I+  + E+     G  V+E+GAG G    +L  +GA +V  IE+
Sbjct: 54 PYIVALMIEALALRPGDRVLEVGAGCGYAAAVLARMGA-QVFAIER 98


>gi|269957150|ref|YP_003326939.1| hypothetical protein Xcel_2365 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305831|gb|ACZ31381.1| hypothetical protein Xcel_2365 [Xylanimonas cellulosilytica DSM
           15894]
          Length = 216

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 37  KKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK----DQQFFPILKDIS 90
           +++ E   SG++DG +V+++GAG G+L   LL  GA  V  ++     D     +L +  
Sbjct: 36  RRVVELYRSGAIDGESVLDVGAGIGDLGLELLRAGASHVTAVDLSPGYDDAAATLLAE-- 93

Query: 91  SQHPNRLEIIQDD 103
           +    R++    D
Sbjct: 94  AGLAGRVQRAVGD 106


>gi|148272661|ref|YP_001222222.1| putative SAM-dependent methyltransferase [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
 gi|147830591|emb|CAN01527.1| putative SAM-dependant methyltransferase [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
          Length = 249

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           V+++GAG G LT++L   G   V  +E D +   +L D    
Sbjct: 44 RVVDLGAGTGKLTRLLADRG-LDVTAVEPDDRMRAVLADRLPG 85


>gi|83815740|ref|YP_446055.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Salinibacter ruber DSM 13855]
 gi|294507975|ref|YP_003572033.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase
           [Salinibacter ruber M8]
 gi|123528440|sp|Q2S176|PIMT_SALRD RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|83757134|gb|ABC45247.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Salinibacter ruber DSM 13855]
 gi|294344303|emb|CBH25081.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase
           [Salinibacter ruber M8]
          Length = 230

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
              G      ++E+G G G    +L  +GAR V  IE+        + +       +   
Sbjct: 78  ALLGVQPDDRILEVGTGSGFQAAVLCEMGAR-VYSIERHDDLLRRARSVLDGLGYDVRTR 136

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
             D  +      F     I + A  P  I   LL   
Sbjct: 137 HGDGTRGW--PAFAPYDGIVVTAGAP-EIPAPLLHQL 170


>gi|15677720|ref|NP_274881.1| protein-L-isoaspartate O-methyltransferase [Neisseria meningitidis
           MC58]
 gi|7227144|gb|AAF42219.1| protein-L-isoaspartate O-methyltransferase [Neisseria meningitidis
           MC58]
 gi|316985499|gb|EFV64446.1| methyltransferase domain protein [Neisseria meningitidis H44/76]
 gi|325139542|gb|EGC62082.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis CU385]
 gi|325200940|gb|ADY96395.1| putative protein-L-isoaspartate O-methyltransferase [Neisseria
           meningitidis H44/76]
          Length = 218

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
             ++ ++A+        TV+EIG G G  T  LL   A +V+  + D
Sbjct: 63  PKVVARLAQGLKLTKNDTVLEIGTGSGYAT-ALLAKLAGRVVSDDID 108


>gi|319640041|ref|ZP_07994768.1| hypothetical protein HMPREF9011_00365 [Bacteroides sp. 3_1_40A]
 gi|317388319|gb|EFV69171.1| hypothetical protein HMPREF9011_00365 [Bacteroides sp. 3_1_40A]
          Length = 288

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 32/190 (16%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            K I  +SG   G T+++IG G G  +  +   G R V  IEK  Q     K+       
Sbjct: 81  AKLIKRTSGLSKG-TLLDIGTGTGYFSNAMKERGWR-VKAIEKSPQARSFAKEHFE---- 134

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY-NIGTRLLFNWISADTWPPFWESLTLLF 154
            L++  +DAL    +  F+  +   ++ +L + N     LF  +                
Sbjct: 135 -LDVDTEDALAGYADHSFDAITLWHVMEHLEHLNETWEKLFKLL---------------- 177

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS--TVIHFIPHL 212
            KE G  I A  N   Y        W       +D+  H++  +P V     V H     
Sbjct: 178 -KERGVLIVAVPNPSSYDA-EKYKEWWA----AYDVPRHLWHFTPSVMQQFGVKHGFKLA 231

Query: 213 NPIPCCLESL 222
              P   ++ 
Sbjct: 232 EQHPMPFDAF 241


>gi|294777446|ref|ZP_06742897.1| methyltransferase domain protein [Bacteroides vulgatus PC510]
 gi|294448514|gb|EFG17063.1| methyltransferase domain protein [Bacteroides vulgatus PC510]
          Length = 288

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 32/190 (16%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            K I  +SG   G T+++IG G G  +  +   G R V  IEK  Q     K+       
Sbjct: 81  AKLIKRTSGLSKG-TLLDIGTGTGYFSNAMKERGWR-VKAIEKSPQARSFAKEHFE---- 134

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY-NIGTRLLFNWISADTWPPFWESLTLLF 154
            L++  +DAL    +  F+  +   ++ +L + N     LF  +                
Sbjct: 135 -LDVDTEDALAGYADHSFDAITLWHVMEHLEHLNETWEKLFKLL---------------- 177

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS--TVIHFIPHL 212
            KE G  I A  N   Y        W       +D+  H++  +P V     V H     
Sbjct: 178 -KERGVLIVAVPNPSSYDA-EKYKEWWA----AYDVPRHLWHFTPSVMQQFGVKHGFKLA 231

Query: 213 NPIPCCLESL 222
              P   ++ 
Sbjct: 232 EQHPMPFDAF 241


>gi|258511739|ref|YP_003185173.1| hemolysin A [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478465|gb|ACV58784.1| hemolysin A [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 279

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 7/133 (5%)

Query: 36  LKKIAESSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           L++  ++ G      V I++GA  G  T  LL  GAR V  ++     +  L     Q  
Sbjct: 68  LERALDTFGIPVKDRVAIDVGASTGGFTDCLLQRGARLVYAVDV---GYGQLAWRLRQ-D 123

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +R+ +++    +      F+    + ++      I  RLLF  +S    P       +  
Sbjct: 124 DRVRVMERTNFRHVDAARFDPRPDLAVMDVSF--ISIRLLFPKLSEVCLPDVDIISLIKP 181

Query: 155 QKEVGERITAQKN 167
           Q E G     +  
Sbjct: 182 QFEAGRDRVGKGG 194


>gi|150003737|ref|YP_001298481.1| hypothetical protein BVU_1168 [Bacteroides vulgatus ATCC 8482]
 gi|254881034|ref|ZP_05253744.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|149932161|gb|ABR38859.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254833827|gb|EET14136.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 298

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 32/190 (16%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            K I  +SG   G T+++IG G G  +  +   G R V  IEK  Q     K+       
Sbjct: 91  AKLIKRTSGLSKG-TLLDIGTGTGYFSNAMKERGWR-VKAIEKSPQARSFAKEHFE---- 144

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY-NIGTRLLFNWISADTWPPFWESLTLLF 154
            L++  +DAL    +  F+  +   ++ +L + N     LF  +                
Sbjct: 145 -LDVDTEDALAGYADHSFDAITLWHVMEHLEHLNETWEKLFKLL---------------- 187

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS--TVIHFIPHL 212
            KE G  I A  N   Y        W       +D+  H++  +P V     V H     
Sbjct: 188 -KERGVLIVAVPNPSSYDA-EKYKEWWA----AYDVPRHLWHFTPSVMQQFGVKHGFKLA 241

Query: 213 NPIPCCLESL 222
              P   ++ 
Sbjct: 242 EQHPMPFDAF 251


>gi|89901543|ref|YP_524014.1| phospholipid N-methyltransferase [Rhodoferax ferrireducens T118]
 gi|89346280|gb|ABD70483.1| phospholipid N-methyltransferase [Rhodoferax ferrireducens T118]
          Length = 192

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 16/118 (13%)

Query: 30  LLDLNILKKIA--------ESSGSLDG-ITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79
           L D      +A        E +        V+E+GAG G +TQ L   +   K+ ++E  
Sbjct: 21  LKDPRTTGALAPSSARLARELANLAKNSENVLELGAGTGAVTQALSRVVNEDKLQIVELQ 80

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           ++    LK     +PN L+++   A        +  S  + ++++LP+      + + 
Sbjct: 81  KKLAVSLKKR---YPN-LKVLHSTA--HRALDNYRQSGSVAVVSSLPFRSLPPAIKHL 132


>gi|83643240|ref|YP_431675.1| cyclopropane fatty acid synthase -like protein [Hahella chejuensis
           KCTC 2396]
 gi|83631283|gb|ABC27250.1| Cyclopropane fatty acid synthase and related methyltransferase
           [Hahella chejuensis KCTC 2396]
          Length = 412

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKDISSQH 93
           L++I           ++EIG+G G +          KV    I  +Q    + +   +  
Sbjct: 177 LERICRKLALTPNDHLLEIGSGWGGMALYAAREYGCKVTTATISIEQHTAVVEQVRQAGL 236

Query: 94  PNRLEIIQDDALKVD 108
            +R+ ++  D  K++
Sbjct: 237 QDRVTVLLQDYRKLE 251


>gi|108804665|ref|YP_644602.1| type 11 methyltransferase [Rubrobacter xylanophilus DSM 9941]
 gi|108765908|gb|ABG04790.1| Methyltransferase type 11 [Rubrobacter xylanophilus DSM 9941]
          Length = 203

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPI 85
          Q FL +  +L           G TV++ GAG G L   L     R V+  +++  +    
Sbjct: 22 QEFLPNERVLD----LLDLRGGETVVDYGAGIGILAVPLARSLPRGVVHAVDESPEMVGR 77

Query: 86 LKDISSQ 92
          L++   +
Sbjct: 78 LRERVER 84


>gi|303248782|ref|ZP_07335033.1| Methyltransferase type 12 [Desulfovibrio fructosovorans JJ]
 gi|302489794|gb|EFL49724.1| Methyltransferase type 12 [Desulfovibrio fructosovorans JJ]
          Length = 554

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 15/100 (15%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           HY + P++           +L  I        G  ++E+GAG G LT  L+TL    +  
Sbjct: 49  HYHLTPRRKT---------LLSWI----DFGPGGRILELGAGCGALTAHLVTL-PHAITA 94

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI 115
           +E   +   ++K    ++   LEI+  +A  + +E  +++
Sbjct: 95  VEGSPERAAVIKARC-RNARNLEIVAANAAGLPYEHQYDV 133


>gi|301163366|emb|CBW22916.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 237

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
            +++IG G G +  ML    +  VI +E D+       +  ++ P  +R+E++  D    
Sbjct: 40  RILDIGTGTGLVALMLAQRCSASVIALEIDETAAQQAAENITRSPWGSRIEVVCQDFRLY 99

Query: 108 DFEKFFNISSPIRIIANLPY 127
             +   N      I++N PY
Sbjct: 100 SNKN--NSLKYDTIVSNPPY 117


>gi|198283902|ref|YP_002220223.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665473|ref|YP_002426536.1| protein-L-isoaspartate O-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248423|gb|ACH84016.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517686|gb|ACK78272.1| protein-L-isoaspartate O-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 217

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            ++ +     +   V+EIG G G LT  L+   A  V  +E D+     L   ++ H
Sbjct: 67  ARVVQELDLREQDRVLEIGTGSGYLT-ALMAQLAGMVHSVE-DR---ADLSRTAADH 118


>gi|220907787|ref|YP_002483098.1| type 12 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219864398|gb|ACL44737.1| Methyltransferase type 12 [Cyanothece sp. PCC 7425]
          Length = 240

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
             +   ++E+G G G L+  +L      K++ ++   +     +    ++    R+  I+
Sbjct: 41  PSETENILELGCGTGELSLKVLQRCPGAKLVAVDYSPRMLAYAQTKLTAAGLGERVTWIE 100

Query: 102 DD 103
            D
Sbjct: 101 AD 102


>gi|123422177|ref|XP_001306126.1| protein arginine N-methyltransferase [Trichomonas vaginalis G3]
 gi|121887683|gb|EAX93196.1| protein arginine N-methyltransferase, putative [Trichomonas
           vaginalis G3]
          Length = 327

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQDDA 104
            G  ++++G G G L+      GA+ V  +EK        ++I   +   +R+ +IQ   
Sbjct: 49  KGKIILDVGCGTGILSMFAAKAGAKHVYAVEK-SSIIDYAREIIDINGFGDRITVIQGTI 107

Query: 105 LKVDFEKFFNI 115
            ++D  +  ++
Sbjct: 108 EEIDLPEKVDV 118


>gi|158320270|ref|YP_001512777.1| ribosomal protein L11 methyltransferase [Alkaliphilus oremlandii
           OhILAs]
 gi|166989893|sp|A8MG53|PRMA_ALKOO RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|158140469|gb|ABW18781.1| ribosomal protein L11 methyltransferase [Alkaliphilus oremlandii
           OhILAs]
          Length = 313

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                TV +IG G G L  +   LGA+K I ++ D     +  +   +++  N +EI Q 
Sbjct: 172 ISKDTTVFDIGTGSGILAIVGAKLGAKKAIGVDFDPVAVTVANENVRANKVENIVEIKQG 231

Query: 103 DALKVDFEK 111
           + + V  EK
Sbjct: 232 NLMDVVSEK 240


>gi|48477307|ref|YP_023013.1| methyltransferase [Picrophilus torridus DSM 9790]
 gi|48429955|gb|AAT42820.1| methyltransferase [Picrophilus torridus DSM 9790]
          Length = 182

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
               G  V+EIGAG G ++  L  L    V   + D +   ++K+ +  +   ++II+ D
Sbjct: 22  NIKCGKKVLEIGAGTGIISVNLA-LNNHDVTATDIDDKAIDLIKENARINHVNIKIIKSD 80

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
                ++K+        II N PY
Sbjct: 81  LFDNIYDKY------DTIIFNPPY 98


>gi|20090221|ref|NP_616296.1| hypothetical protein MA1360 [Methanosarcina acetivorans C2A]
 gi|19915213|gb|AAM04776.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 281

 Score = 39.8 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 24/173 (13%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
               I +K  E         V++IGAGPG L   +    A  V  +E  +    +++D  
Sbjct: 49  KSREITEKRIEGMKLSPDSRVLDIGAGPGTLAIPISQRVAH-VTAVEPSEGMISVMQDNI 107

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            ++     I   D +  D+E     S        +  +         +         + +
Sbjct: 108 KEYG----IENIDPVHKDWESVDVESDLSAPYDVVFASYS-------LGMKDIRTSVQKM 156

Query: 151 TLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
                K V     A + +   + R            +   +    + P+PK  
Sbjct: 157 VDASSKYVYLYWFAGETSWDMHSR-----------KLWPFLHGSEYQPAPKCD 198


>gi|322387303|ref|ZP_08060913.1| adenine-specific methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141832|gb|EFX37327.1| adenine-specific methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 317

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNR 96
           I E     + ++++E+G+G G L    LT   +KV  + IE D     +   ++     +
Sbjct: 101 IIEQLFPAENVSLLELGSGMGILGASFLTSMNKKVDYLGIELDDLLIDLAASMAEVMDLK 160

Query: 97  LEIIQDDALK 106
           +  +Q DA++
Sbjct: 161 MGFVQGDAVR 170


>gi|323528576|ref|YP_004230728.1| protein-L-isoaspartate O-methyltransferase [Burkholderia sp.
           CCGE1001]
 gi|323385578|gb|ADX57668.1| protein-L-isoaspartate O-methyltransferase [Burkholderia sp.
           CCGE1001]
          Length = 273

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 53/168 (31%), Gaps = 15/168 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E++       V+++G G G     +    A  V  IE+  +   + +D+ ++
Sbjct: 64  PAIVATMLEAADLSPTDVVLDVGTGSGYA-AAVAATLAAHVYSIERHAELVAMARDMLAR 122

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
              + + +   D            +    IIA         +    ++            
Sbjct: 123 LNMSNVTVYLGDG----TAGLAEHAPYDAIIAAAGGPHIPDVWRRQLAIGGRIVMPVGRE 178

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
           L +QK        +     Y   S+      + + +  +    + P+P
Sbjct: 179 LHYQK---LIKLVRHGEDDYRSCSL-----GEVSFVPLVGADAW-PAP 217


>gi|257053469|ref|YP_003131302.1| Methyltransferase type 11 [Halorhabdus utahensis DSM 12940]
 gi|256692232|gb|ACV12569.1| Methyltransferase type 11 [Halorhabdus utahensis DSM 12940]
          Length = 262

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +        V+++G+G G LT++L       V+ ++ D Q    ++
Sbjct: 25 STLDLSTRERVLDVGSGTGALTRVLREETPGDVVGVDADPQLLDHVE 71


>gi|218898675|ref|YP_002447086.1| hypothetical protein BCG9842_B1625 [Bacillus cereus G9842]
 gi|228902080|ref|ZP_04066244.1| Methyltransferase type 11 [Bacillus thuringiensis IBL 4222]
 gi|218540859|gb|ACK93253.1| conserved hypothetical protein [Bacillus cereus G9842]
 gi|228857506|gb|EEN02002.1| Methyltransferase type 11 [Bacillus thuringiensis IBL 4222]
          Length = 239

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     +      KV  +EK++      KD      
Sbjct: 25  LTKQLLAQLPLRQGADVLEIGCGTGKTAAYMTKEFGYKVTAVEKNEIMIQKAKDRWLFER 84

Query: 95  NRLEIIQDDA 104
             +++IQ DA
Sbjct: 85  LNVQLIQGDA 94


>gi|149198235|ref|ZP_01875282.1| Methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149138837|gb|EDM27243.1| Methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 185

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-------FFPILKDISSQHPN 95
            G L+G  V ++ AG G L    L+ GA KV  IE D +        F  +K   S    
Sbjct: 36  IGCLEGDVVADVFAGSGALGLEALSRGASKVYFIENDFRTMKIIESNFEKVKKSMSGDCG 95

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRI-IANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
            +E +  D      +    I+S I + I++ PY   + L    + +D         T + 
Sbjct: 96  EVEFVCQD----WRQALAQINSEIDVLISDPPYGEDSELACELLRSDEILKAGHEETFVV 151

Query: 155 QKEVGERITAQKNSP 169
            + +       +N  
Sbjct: 152 LEHMTRSKLESENWK 166


>gi|308473896|ref|XP_003099171.1| hypothetical protein CRE_28902 [Caenorhabditis remanei]
 gi|308267644|gb|EFP11597.1| hypothetical protein CRE_28902 [Caenorhabditis remanei]
          Length = 907

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 15/162 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEK-D---------QQFFPI 85
            KI +          +++G G G L   +      +K + IEK D           +F  
Sbjct: 147 AKICDEIDIGKKDVFVDLGCGVGQLVCFVAAYKQCKKSVGIEKSDLPYECSTQVTGYFKK 206

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L     +   + EI   D L   + K     + +  I NL ++         I  D  P 
Sbjct: 207 LMSHFGKKHGKFEISHGDMLDEKYRKLICEEATVIFINNLMFDEKLMFQLKLILQDLKP- 265

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
                 ++  K V +      +    G L+      ++ +++
Sbjct: 266 ---GTKVITTKPVCDIRRTDLSDRSLGVLTYDITALSETSVL 304


>gi|300853986|ref|YP_003778970.1| ribosomal protein L11 methyltransferase [Clostridium ljungdahlii
           DSM 13528]
 gi|300434101|gb|ADK13868.1| ribosomal protein L11 methyltransferase [Clostridium ljungdahlii
           DSM 13528]
          Length = 313

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDD 103
                TV +IG G G L      LGA++V  ++ D              H   + I+  D
Sbjct: 175 IKPEYTVFDIGTGSGILAITSSKLGAKEVTGVDLDPVAVKSASTNVGYNHIKNVNILHGD 234

Query: 104 ALKV 107
            + V
Sbjct: 235 LMDV 238


>gi|299535712|ref|ZP_07049033.1| putative caffeoyl-CoA O-methyltransferase [Lysinibacillus
           fusiformis ZC1]
 gi|298728912|gb|EFI69466.1| putative caffeoyl-CoA O-methyltransferase [Lysinibacillus
           fusiformis ZC1]
          Length = 210

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH--PNRL 97
           +     +   ++EIG   G     +       +++ IE+DQ      K    +    +R+
Sbjct: 44  QLLRIQNPSKILEIGTAIGYSAIRMAEALPHVQIVTIERDQDRVARAKAYIKRSTVSDRI 103

Query: 98  EIIQDDALKVDFEKF 112
            +I+ DAL+VD E  
Sbjct: 104 TVIEGDALEVDDEAI 118


>gi|255067207|ref|ZP_05319062.1| periplasmic glucans biosynthesis protein, MdoG [Neisseria sicca
           ATCC 29256]
 gi|255048575|gb|EET44039.1| periplasmic glucans biosynthesis protein, MdoG [Neisseria sicca
           ATCC 29256]
          Length = 218

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             I+ ++A+        TV+EIG G G  T  LL   A KV+  + D +
Sbjct: 63  PKIVARLAQGLKLTKTDTVLEIGTGSGYAT-ALLAKLAGKVVSDDLDAE 110


>gi|257790880|ref|YP_003181486.1| methyltransferase type 12 [Eggerthella lenta DSM 2243]
 gi|257474777|gb|ACV55097.1| methyltransferase type 12 [Eggerthella lenta DSM 2243]
          Length = 302

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +++  E +G  +G TV ++G G G L+  L   G  KV+  +  Q     L++   +   
Sbjct: 56  VERFLELAGIREGETVFDMGCGTGALSVPLGKRG-HKVVAADFSQGMLGQLREALDREGV 114

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           R  +        D      +   +  +A    ++ T  L + +   T          L
Sbjct: 115 R-TVFPKQMSWADDWPSLGVRPGMVDVALASRSVATADLRDSLLRLTDVARRRVCVTL 171


>gi|170721397|ref|YP_001749085.1| trans-aconitate 2-methyltransferase [Pseudomonas putida W619]
 gi|169759400|gb|ACA72716.1| Trans-aconitate 2-methyltransferase [Pseudomonas putida W619]
          Length = 258

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ 92
             ++ +  +          ++G GPGN T++LL      +V  ++ D       +     
Sbjct: 17  RAVRDLLAAVPPRPVRHATDLGCGPGNSTEILLQRHPDAQVTALDSDPDMIDKARARQRL 76

Query: 93  HPNRLEIIQDDALKVDFEKFFNI 115
              R+     D       +  ++
Sbjct: 77  RIPRVRCEIADIAHWTAPEPQDL 99


>gi|83744476|gb|ABC42566.1| putative methyltransferase [Streptomyces hygroscopicus]
          Length = 378

 Score = 39.8 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            +I+ ++  +    DG  V+EIG G G N   +   LGA +V  +E D       +    
Sbjct: 91  PSIVARMLAALQVEDGHRVLEIGTGTGYNAALLAARLGAERVTTVEVDPGVAAAARRSLK 150

Query: 92  QHPNRL-EIIQDD 103
               R   ++  D
Sbjct: 151 AALGRAPAVVTGD 163


>gi|317506898|ref|ZP_07964670.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316254826|gb|EFV14124.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 331

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
              ++V+EI AG G  +  L   G    + +E D+     L+           + + D  
Sbjct: 4   TPQLSVLEICAGAGGQSSGLEMAGFGHALAVEIDKDAAATLQLNRPSWD----VHEGDVR 59

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +V+  ++  +      +   P++I  + L      D +P     +
Sbjct: 60  EVNGREYKGVDLLAGGVPCPPFSIAGKQLGADDERDLFPEAIRLV 104


>gi|289167098|ref|YP_003445365.1| hypothetical protein smi_0212 [Streptococcus mitis B6]
 gi|288906663|emb|CBJ21497.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 136

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL +L + + + +    L    +++ G G G LT  L    A+ V +++  ++     + 
Sbjct: 19  FLANL-VCQAVEKQIDLLSDKEILDFGGGTGLLTLPLAKQ-AKSVTLVDISEKMLEQARL 76

Query: 89  ISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            + Q   + ++ ++ D LK   ++ F++    R++ ++P
Sbjct: 77  KAEQQDIKNIQFLEQDLLKNPLKQEFDLIVVCRVLHHMP 115


>gi|254679736|gb|ACL79581.2| C5-O-methyltransferase [Streptomyces bingchenggensis]
          Length = 281

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 45/132 (34%), Gaps = 5/132 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDI 89
             +   +    G + G  V+++G G G  T  L      +V+ +       +    L + 
Sbjct: 51  DRLTDHLIGKLGDVAGRRVLDVGCGSGRPTVRLAQRAPTEVVGVTVSPVQIERATALAER 110

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
                +R+  ++ DA+ + F +  +  +   +          ++L               
Sbjct: 111 -EGVADRVRFVRADAMTLPFPE-ASFDAVWALECMFHMPSPAQVLREIARVLRPGGRLAV 168

Query: 150 LTLLFQKEVGER 161
           + ++ ++ +  R
Sbjct: 169 MDVVLREPIARR 180


>gi|74318713|ref|YP_316453.1| putative protein-L-isoaspartate o-methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058208|gb|AAZ98648.1| putative protein-L-isoaspartate o-methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 217

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            ++ +         V+EIG G G LT  LL   A +V+ ++        L + ++Q   +
Sbjct: 67  ARVLQEVAIQPTDRVLEIGTGSGYLT-ALLASLAEEVVSVDI-------LAEFTAQATQK 118

Query: 97  LE 98
           L 
Sbjct: 119 LH 120


>gi|269219008|ref|ZP_06162862.1| SAM-dependent methyltransferase [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212119|gb|EEZ78459.1| SAM-dependent methyltransferase [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 277

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + +++ +++       ++E G G G   ++LL    ++ + ++ +++    L +  S+H 
Sbjct: 48  LTRRVIKAARPAKEDRIVEFGPGVGKTAEILLAAEPKEYVGVDPNKEGTQQLLETISKH- 106

Query: 95  NRLEIIQDDA 104
            +  + Q DA
Sbjct: 107 GQARLQQADA 116


>gi|260578718|ref|ZP_05846626.1| tRNA (adenine-N(1)-)-methyltransferase [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603215|gb|EEW16484.1| tRNA (adenine-N(1)-)-methyltransferase [Corynebacterium jeikeium
           ATCC 43734]
          Length = 277

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G TV+E GAG G ++  LL       KVI  E  +         ++D 
Sbjct: 88  AAQILVEGDIFPGATVLEAGAGSGAMSTWLLRAVGPKGKVISYEIREDHLAYAKDNVEDY 147

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNIS 116
              HP   ++   D   V  E   ++ 
Sbjct: 148 FGGHPENWDLRLGDLKTVTKEDVGDVD 174


>gi|15825497|gb|AAL09703.1|AF418560_1 arginine methyltransferase [Hydra vulgaris]
          Length = 272

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 27  QNFLLDLNILK------KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           QN + D   ++       I +++    G  V+++GAG G L+      GARKV  +E
Sbjct: 134 QNMMQD--YIRTSTYQSAILQNANEFKGKVVLDVGAGTGILSYFAAQAGARKVYAVE 188


>gi|84686814|ref|ZP_01014701.1| hypothetical protein 1099457000266_RB2654_22593 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665245|gb|EAQ11724.1| hypothetical protein RB2654_22593 [Rhodobacterales bacterium
           HTCC2654]
          Length = 1420

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 23/182 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             ++    G TV+E  AG G L       GA  ++  E D     +L+ +        E+
Sbjct: 120 VRAAAIRKGETVLEPSAGTGALAAFATRAGATLLLN-EIDPFRQHLLRAVFGG-----EV 173

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTR-------LLFNWISADTWPPFWESLTL 152
              D   +D +       P  ++ N P+               + I+A         L  
Sbjct: 174 TGHDGEHID-DLLQTPILPDVVVMNPPFASSVDRSRDKHIAAKHLIAAAKRLAPGGRLVA 232

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP-SPKVTSTVIHFIPH 211
           +  +       A   S   G L+          +   +   V+      V + +I F   
Sbjct: 233 IMPQGFTPERDAAHWSRACGLLT--------PRLALTMPGQVYRKLGTSVETQLIVFDKV 284

Query: 212 LN 213
             
Sbjct: 285 RE 286


>gi|312797059|ref|YP_004029981.1| tRNA (m(7)G46) methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312168834|emb|CBW75837.1| tRNA (m(7)G46) methyltransferase (EC 2.1.1.33) [Burkholderia
           rhizoxinica HKI 454]
          Length = 381

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++    D   V+EIG G G  T  +         + IE  +     +LK I  +  N + 
Sbjct: 199 DAIFGRDAPRVLEIGFGMGTTTADIAAQRPGDDFLGIEVHEPGVGALLKLIGERQLNNIR 258

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +IQ DA++V                       +    +    D W         L Q   
Sbjct: 259 VIQHDAVEVIAHMLAED---------------SVDGIHIFFPDPWHKARHHKRRLIQPPF 303

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
            + + ++  +  Y  L+       +
Sbjct: 304 VKLLASRLRAGGYLHLATDWQNYAE 328


>gi|291007089|ref|ZP_06565062.1| methyltransferase (methylase) [Saccharopolyspora erythraea NRRL
           2338]
          Length = 193

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEI 99
           ES+  L G  V+++  G G L    L+ GA     +E D++   +L+  +S    R + +
Sbjct: 37  ESATELAGARVLDLYGGSGALGLEALSRGAAHATFVESDRRAVQLLRRNASALGFRDVSV 96

Query: 100 IQDDALKVDFEKFFNISSPIRII-ANLPYNIGTRLLFNWISA 140
            Q    KV+         P  ++ A+ PY++    L   + +
Sbjct: 97  AQG---KVETVLASAAGEPFDVVLADPPYDVDAARLDQVLRS 135


>gi|320006881|gb|ADW01731.1| methylase [Streptomyces flavogriseus ATCC 33331]
          Length = 227

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  +L       G   G  V+++G G G L      LGAR V  ++  ++     +  +
Sbjct: 25  HDTRLLMAALNREGISPGTEVLDVGTGSGALALHAARLGAR-VTAVDIARRAVATARLNA 83

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             H  R+ + + D L     + +++     +I N PY
Sbjct: 84  LLHRRRITVQRSDLLSALPGRSYDL-----VICNPPY 115


>gi|325980944|ref|YP_004293346.1| Methyltransferase type 11 [Nitrosomonas sp. AL212]
 gi|325530463|gb|ADZ25184.1| Methyltransferase type 11 [Nitrosomonas sp. AL212]
          Length = 216

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV--IEKDQQFFPILKD 88
           ++  ++ +    +    G TV+++G G G L  +L+  G   V V  ++ D +   I + 
Sbjct: 33  INAGLIAR----AHIQSGQTVLDVGCGTGTL-ALLMKQGHPDVAVHGLDIDAEILRIAQR 87

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            ++Q    +   Q  A       + + S    + + L +++  +   + +        + 
Sbjct: 88  KAAQAGQNILWQQGTA---TCLPYPDQSVDHVVASLLLHHLARQDKQHMLREA-----FR 139

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
            L       V +    + +    G +S    W  + 
Sbjct: 140 VLKPGGALHVAD--FGRPHDFSMGLISGFMRWFEEI 173


>gi|256395464|ref|YP_003117028.1| methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
 gi|256361690|gb|ACU75187.1| Methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
          Length = 259

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            +++  + +  G  +    +EIG GP G +T++L   G R +  +E D+++   L     
Sbjct: 14  EDVVDDLLDYVG-GEVSPALEIGPGPDGRMTRLLAQRGIR-LTCLEPDERWAAALDARIH 71

Query: 92  QHP--NRLEIIQDD 103
           +H   N L +  +D
Sbjct: 72  EHAFINILNLRLED 85


>gi|219123652|ref|XP_002182136.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406737|gb|EEC46676.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 283

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
             D   V+E+G G G    +L  L    V++ +K +     L+D I++  P+R  ++Q +
Sbjct: 116 LTDVTNVLELGCGLGLPGMILHALRQSPVVLSDK-ESLLTQLRDNIANAFPDRGRLLQAE 174

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           AL    +    +   +R+       +    +F ++  D+W         LF
Sbjct: 175 ALDWSDDSVHQLLEKLRLPNGFDLVLNCDCVFEYLYGDSWKHLVTCQEALF 225


>gi|254465396|ref|ZP_05078807.1| peptidase S10, Flavivirus NS3 serine protease, putative
           [Rhodobacterales bacterium Y4I]
 gi|206686304|gb|EDZ46786.1| peptidase S10, Flavivirus NS3 serine protease, putative
           [Rhodobacterales bacterium Y4I]
          Length = 402

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH--PNRLE 98
           ++    G  V++IG G G LT ML    GA+ V   E+          + +++   +R+ 
Sbjct: 86  AAKVRPGDVVLDIGCGAG-LTAMLAARAGAKHVYTCEQQPMIAQAATRVIAENGLSDRIT 144

Query: 99  II 100
           +I
Sbjct: 145 VI 146


>gi|90580344|ref|ZP_01236151.1| protein-L-isoaspartate O-methyltransferase [Vibrio angustum S14]
 gi|90438646|gb|EAS63830.1| protein-L-isoaspartate O-methyltransferase [Vibrio angustum S14]
          Length = 209

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 7/126 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E  G     +V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 62  PYIVARMTELLGLTYQSSVLEIGTGSGYQTAVLAQL-VEHVYSVER----IKALQWQAKR 116

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              +LE+        D  + +    P   I  +     + +  + ++             
Sbjct: 117 RFKQLELHNISTKHGDGWQGWASKGPFDAI--IVTAAASEIPQSLLAQLVDGGRLILPVG 174

Query: 153 LFQKEV 158
             Q+E+
Sbjct: 175 CQQQEL 180


>gi|68536026|ref|YP_250731.1| putative tRNA(1-methyladenosine) methyltransferase [Corynebacterium
           jeikeium K411]
 gi|68263625|emb|CAI37113.1| putative tRNA(1-methyladenosine) methyltransferase [Corynebacterium
           jeikeium K411]
          Length = 277

 Score = 39.8 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G TV+E GAG G ++  LL       KVI  E  +         ++D 
Sbjct: 88  AAQILVEGDIFPGATVLEAGAGSGAMSTWLLRAVGPKGKVISYEIREDHLAYAKDNVEDY 147

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNIS 116
              HP   ++   D   V  E   ++ 
Sbjct: 148 FGGHPENWDLRLGDLKTVTKEDVGDVD 174


>gi|333026795|ref|ZP_08454859.1| putative methyltransferase type 11 [Streptomyces sp. Tu6071]
 gi|332746647|gb|EGJ77088.1| putative methyltransferase type 11 [Streptomyces sp. Tu6071]
          Length = 281

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             + +K+A+S G  +G  V+++G G G     L T    +V  +  
Sbjct: 55  QRLTRKVADSLGLREGDRVLDVGCGLGAPALQLATEYGVRVTGVNI 100


>gi|330831983|ref|YP_004400808.1| hypothetical protein SSUST3_0142 [Streptococcus suis ST3]
 gi|329306206|gb|AEB80622.1| conserved hypothetical protein [Streptococcus suis ST3]
          Length = 317

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQ 92
           IL  + +       +TV+EIG+G GNL Q +L    +++  + IE D     +   I+  
Sbjct: 97  ILSFLVDQLMPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADV 156

Query: 93  HPNRLEIIQDDALK 106
               +   Q DA++
Sbjct: 157 MQADISFAQGDAVR 170


>gi|297625401|ref|YP_003687164.1| methyltransferase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921166|emb|CBL55713.1| methyltransferase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 199

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           ++     G  V++IG G G L    L   A +VI ++ D +     +   ++ PN  +++
Sbjct: 17  DAVPPSGGD-VLDIGCGDG-LLVEKLATKATRVIGLDPDPRAINQARRRLTETPNA-QVV 73

Query: 101 QDDALK 106
               L 
Sbjct: 74  LGSFLT 79


>gi|260771799|ref|ZP_05880717.1| predicted O-methyltransferase [Vibrio metschnikovii CIP 69.14]
 gi|260613091|gb|EEX38292.1| predicted O-methyltransferase [Vibrio metschnikovii CIP 69.14]
          Length = 240

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 25/170 (14%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ--FFPILKDISSQHPNRLEIIQD 102
                +++IG G G L+ M        ++  ++ DQQ           S   +R+E++  
Sbjct: 41  RPPDRLLDIGCGTGLLSLMCAQRFTHSQICAVDIDQQAFLAASNNIRRSVWSSRIEVMHG 100

Query: 103 DA--LKVDF--------EKFFNISSP----IRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           D   L+             +FN   P     R IA     +  + L +  +    PP   
Sbjct: 101 DINTLRFTQPFDAIICNPPYFNSGQPAQQQTRAIARHTETLSHQQLLDCFAQH-LPPQGT 159

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA-----TMMFDISPH 193
           +  +L Q+E    I   +    Y  L+ L   RT        ++F++S  
Sbjct: 160 ASLILPQQEGQIFIDQAQQQGWY--LTRLCQVRTAPHKPIQRLLFELSRT 207


>gi|302519377|ref|ZP_07271719.1| methyltransferase type 11 [Streptomyces sp. SPB78]
 gi|318056438|ref|ZP_07975161.1| methyltransferase type 11 [Streptomyces sp. SA3_actG]
 gi|302428272|gb|EFL00088.1| methyltransferase type 11 [Streptomyces sp. SPB78]
          Length = 281

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             + +K+A+S G  +G  V+++G G G     L T    +V  +  
Sbjct: 55  QRLTRKVADSLGLREGDRVLDVGCGLGAPALQLATEYGVRVTGVNI 100


>gi|229168303|ref|ZP_04296028.1| Methyltransferase type 11 [Bacillus cereus AH621]
 gi|228615129|gb|EEK72229.1| Methyltransferase type 11 [Bacillus cereus AH621]
          Length = 239

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     +      KV  +EK++      KD      
Sbjct: 25  LTKQLLSQLPLRHGANVLEIGCGTGKTAAYMTKELGYKVTAVEKNEIMIQKAKDRWLFDG 84

Query: 95  NRLEIIQDDA 104
             +++IQ D 
Sbjct: 85  LNIQLIQGDV 94


>gi|255691883|ref|ZP_05415558.1| SmtA protein [Bacteroides finegoldii DSM 17565]
 gi|260622436|gb|EEX45307.1| SmtA protein [Bacteroides finegoldii DSM 17565]
          Length = 236

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQH--PNRLEIIQDDAL 105
            V+++G G G +  ML       V  + +E D       K+  ++     ++E++Q D  
Sbjct: 40  RVLDVGTGTGLVALMLAQRSPADVKIVALEVDTAAVEQAKENVARSFWKEQIEVVQADFN 99

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGT 131
           +      F++     I++N PY +G+
Sbjct: 100 QYHSSGKFDV-----IVSNPPYFVGS 120


>gi|254166569|ref|ZP_04873423.1| hypothetical protein ABOONEI_1661 [Aciduliprofundum boonei T469]
 gi|289596328|ref|YP_003483024.1| methyltransferase related protein [Aciduliprofundum boonei T469]
 gi|197624179|gb|EDY36740.1| hypothetical protein ABOONEI_1661 [Aciduliprofundum boonei T469]
 gi|289534115|gb|ADD08462.1| methyltransferase related protein [Aciduliprofundum boonei T469]
          Length = 201

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 21  PKKYMGQNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           PK  + Q F     I   I   A S G ++G  + + GAG G  T     LGARK+  +E
Sbjct: 19  PKASLEQYF-TPATIASDIMFLAYSLGDIEGKILADFGAGTGIFTIGACLLGARKIFSVE 77

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
            D     ILK    ++    EI+  +  + + E
Sbjct: 78  IDVGAIEILKKNLEKYKCSAEILNMNVEEFNSE 110


>gi|159037785|ref|YP_001537038.1| methyltransferase type 11 [Salinispora arenicola CNS-205]
 gi|157916620|gb|ABV98047.1| Methyltransferase type 11 [Salinispora arenicola CNS-205]
          Length = 291

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 59/166 (35%), Gaps = 17/166 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           +   +  ++    G  V+++G+G G   ++   L     +V+ I+   +     +  +  
Sbjct: 40  VTAWLLRAADLRPGSRVLDVGSGTGEPAISAGRLVAPTGRVLGIDLAPEMVDRARRCADG 99

Query: 93  HPNRLEIIQDDA----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW----- 143
             + +E ++ D     L  D          +    + P  +    L + ++         
Sbjct: 100 LGHPIEFVESDVESLDLPADSFDVVFSRWALMFAVDRPRVLT--DLRHLLAPGGVLAAAV 157

Query: 144 --PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
             PP    +T L  + +   +    + P  G  S+    RT+A ++
Sbjct: 158 WGPPEANPMTSLAFRTLAADLPPAPDRP--GPFSMSDAARTRAELV 201


>gi|21726905|emb|CAC93718.1| putative methyltransferase [Lechevalieria aerocolonigenes]
 gi|22536129|gb|AAN01212.1| methyltransferase [Lechevalieria aerocolonigenes]
 gi|22830829|dbj|BAC15754.1| RebM [Lechevalieria aerocolonigenes]
          Length = 273

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDIS 90
             +  ++        G  V+++G G G     L T    +V  I   +        +  +
Sbjct: 47  DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATA 106

Query: 91  SQHPNRLEIIQDDALKVDFEK 111
           +   NR+     DA+ + FE 
Sbjct: 107 AGLANRVTFSYADAMDLPFED 127


>gi|11499903|ref|NP_071147.1| L-isoaspartyl protein carboxyl methyltransferase (pcm-2)
           [Archaeoglobus fulgidus DSM 4304]
 gi|7387999|sp|O27962|PIMT2_ARCFU RecName: Full=Protein-L-isoaspartate O-methyltransferase 2;
           AltName: Full=L-isoaspartyl protein carboxyl
           methyltransferase 2; AltName: Full=Protein L-isoaspartyl
           methyltransferase 2; AltName:
           Full=Protein-beta-aspartate methyltransferase 2;
           Short=PIMT 2
 gi|2648197|gb|AAB88934.1| L-isoaspartyl protein carboxyl methyltransferase (pcm-2)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 219

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +++  + E     +G  V+E+G G G    +T  ++   + KVI IE   +     + I
Sbjct: 62  PHMVAIMCELLDLREGDKVLEVGTGCGYHAAVTAEIVG-KSGKVISIEYIPELAERARAI 120

Query: 90  SSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                 + +E+I  D  K   ++       I + A  P +I   L+   
Sbjct: 121 LKALGYDNVEVIVGDGSKGYEKEA--PYDKIYVTAAAP-DIPKPLIEQL 166


>gi|163941189|ref|YP_001646073.1| methyltransferase type 11 [Bacillus weihenstephanensis KBAB4]
 gi|163863386|gb|ABY44445.1| Methyltransferase type 11 [Bacillus weihenstephanensis KBAB4]
          Length = 239

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     +      KV  +EK++      KD      
Sbjct: 25  LTKQLLSQLPLRHGANVLEIGCGTGKTAAYMTKELGYKVTAVEKNEIMIQKAKDRWLFDG 84

Query: 95  NRLEIIQDDA 104
             +++IQ D 
Sbjct: 85  LNIQLIQGDV 94


>gi|84685209|ref|ZP_01013108.1| methyltransferase, FkbM family protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666941|gb|EAQ13412.1| methyltransferase, FkbM family protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 244

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 45  SLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102
             DG  V+E+GAG G   T +  +        +E D +  P ++    ++    +E+I  
Sbjct: 45  IQDGDRVLELGAGLGFVSTVVCGSKKPAYFAAVEADARLIPHIRRTHEKNGVTGVEVINA 104

Query: 103 DAL 105
             +
Sbjct: 105 AFV 107


>gi|77407922|ref|ZP_00784673.1| Unknown [Streptococcus agalactiae COH1]
 gi|77173469|gb|EAO76587.1| Unknown [Streptococcus agalactiae COH1]
          Length = 324

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            + + V+EIG+G GNL Q LL   ++++  + IE D     +   I+    +  + IQ+D
Sbjct: 108 QETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSSAQFIQED 167

Query: 104 ALK 106
           A++
Sbjct: 168 AVR 170


>gi|93006472|ref|YP_580909.1| ribosomal protein L11 methyltransferase [Psychrobacter
           cryohalolentis K5]
 gi|122415150|sp|Q1QA78|PRMA_PSYCK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|92394150|gb|ABE75425.1| LSU ribosomal protein L11P methyltransferase [Psychrobacter
           cryohalolentis K5]
          Length = 308

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 18/147 (12%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            L    VI+ G G G L    L LGAR V  ++ D Q   +L    +   N ++      
Sbjct: 159 DLTDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQ--AVLATNQNAARNSVDNRLQAF 216

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLL-------------FNWISADTWPPFWESLT 151
           L  DF  F+   +   +   +   +   L+                + A       E +T
Sbjct: 217 LPEDFTAFWQQQNIAPVAVMVANILAKPLIGLAPYFVTLMAPKSRIVLAGLIESQTEQVT 276

Query: 152 LLFQKEVG---ERITAQKNSPHYGRLS 175
             +Q       +     +   H+ RLS
Sbjct: 277 EAYQPYFALDPKHAFTAQEDQHWQRLS 303


>gi|126452731|ref|YP_001067329.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia pseudomallei
           1106a]
 gi|167846929|ref|ZP_02472437.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia pseudomallei
           B7210]
 gi|242315491|ref|ZP_04814507.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           1106b]
 gi|254196005|ref|ZP_04902430.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           S13]
 gi|126226373|gb|ABN89913.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           1106a]
 gi|169652749|gb|EDS85442.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           S13]
 gi|242138730|gb|EES25132.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           1106b]
          Length = 265

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 83  DAIFDRRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 142

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V  +                    +    +    D W         L Q   
Sbjct: 143 IIQHDAVEVLAQMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 187

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A      Y   +       +
Sbjct: 188 VAQLAAHLKPGAYLHCATDWQNYAE 212


>gi|254180962|ref|ZP_04887560.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           1655]
 gi|184211501|gb|EDU08544.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           1655]
          Length = 264

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 82  DAIFDRRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 141

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V  +                    +    +    D W         L Q   
Sbjct: 142 IIQHDAVEVLAQMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 186

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A      Y   +       +
Sbjct: 187 VAQLAAHLKPGAYLHCATDWQNYAE 211


>gi|329725394|gb|EGG61877.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           VCU144]
          Length = 312

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                +VI++G G G L+     LG +++  ++ D+    + K+   ++   + +E +  
Sbjct: 171 VKPTDSVIDVGTGSGILSIASHLLGVQRIKALDIDEMAVNVAKENFKKNLCDDAIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKNENEKF 240


>gi|297616264|ref|YP_003701423.1| methyltransferase small [Syntrophothermus lipocalidus DSM 12680]
 gi|297144101|gb|ADI00858.1| methyltransferase small [Syntrophothermus lipocalidus DSM 12680]
          Length = 246

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEK-DQQFFPILKDI-SSQHPNR 96
           A  +    G  V E+GAG G ++ +L+    +  +  +E  D  +   ++ +  +   + 
Sbjct: 36  AAFATLGRGSQVCELGAGSGVISVLLVQRDKSCSIKALEVQDSLWDRAVRTVKLNGLEDN 95

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           +E+I+ D  +V   + F       ++AN P+    R+    +  D          ++  +
Sbjct: 96  IEVIKGDIRRV--REIFPAGGFDLVVANPPF---WRIGEGLLPEDPEVAAACHEVVVTLE 150

Query: 157 EV--GERITAQKNSP-----------HYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           EV        +                  RLS    +R     +  + PH   P+
Sbjct: 151 EVIGAAAYLLRLGGKLALIQRAARLDEVIRLSH--QYRVPVKRIRMVHPHQGRPA 203


>gi|293605698|ref|ZP_06688075.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
 gi|292815877|gb|EFF74981.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
          Length = 274

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQ 92
           + + IA +        V+E+GAG G     +L    R+V  IE+ +  + + ++   + +
Sbjct: 127 VARMIAAACEDRAPTRVLEVGAGCGY-QAAVLAQFVREVHSIERIRGLYELAREHLRALR 185

Query: 93  HPNRLEIIQDD 103
              R+ +I  D
Sbjct: 186 LTTRIRLIYGD 196


>gi|294013364|ref|YP_003546824.1| putative phospholipid N-methyltransferase [Sphingobium japonicum
           UT26S]
 gi|292676694|dbj|BAI98212.1| putative phospholipid N-methyltransferase [Sphingobium japonicum
           UT26S]
          Length = 209

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDI 89
              ++  + E          +E G G G  T+ +L        ++ I+ +  F   L+  
Sbjct: 41  SRQLVDSMLEGVDWQRTRLFVEYGPGVGTFTRPILDRLHPDATLLAIDLNLDFVAYLE-- 98

Query: 90  SSQHPNRLEIIQDDA 104
           +     RL I+   A
Sbjct: 99  AEIADPRLRIVHGSA 113


>gi|251810995|ref|ZP_04825468.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875996|ref|ZP_06284863.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           SK135]
 gi|293366461|ref|ZP_06613138.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805505|gb|EES58162.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295021|gb|EFA87548.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           SK135]
 gi|291319230|gb|EFE59599.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735232|gb|EGG71524.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           VCU045]
          Length = 312

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                +VI++G G G L+     LG +++  ++ D+    + K+   ++   + +E +  
Sbjct: 171 VKPTDSVIDVGTGSGILSIASHLLGVQRIKALDIDEMAVNVAKENFKKNHCDDAIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKNENEKF 240


>gi|242242853|ref|ZP_04797298.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|242233695|gb|EES36007.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|319400914|gb|EFV89133.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           FRI909]
          Length = 312

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                +VI++G G G L+     LG +++  ++ D+    + K+   ++   + +E +  
Sbjct: 171 VKPTDSVIDVGTGSGILSIASHLLGVQRIKALDIDEMAVNVAKENFKKNHCDDAIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKNENEKF 240


>gi|195329128|ref|XP_002031263.1| GM25897 [Drosophila sechellia]
 gi|194120206|gb|EDW42249.1| GM25897 [Drosophila sechellia]
          Length = 444

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 28  NFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           N L D          I ++ G      V+++G G G L+      GA KVI +E      
Sbjct: 134 NMLRDSVRMEAFRDAIVQNRGLFQDKVVLDVGCGTGILSLFAAEAGASKVIAVEC-TDIA 192

Query: 84  PILKDIS--SQHPNRLEIIQD 102
            + ++I   +Q  + +++++ 
Sbjct: 193 DLAEEIIRDNQKEDVVKVVKG 213


>gi|223940168|ref|ZP_03632030.1| ribosomal L11 methyltransferase [bacterium Ellin514]
 gi|223891185|gb|EEF57684.1| ribosomal L11 methyltransferase [bacterium Ellin514]
          Length = 300

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQH 93
           L +I  S  S    + ++IG G G L+   + LG + V+ ++ D +   + ++  + +  
Sbjct: 148 LHEIVRSRKSQQAQSFLDIGTGSGILSISAVKLGYKPVVALDFDPEAVRVARENALLNGV 207

Query: 94  PNRLEIIQDDALKVD 108
             +L I + D  K+ 
Sbjct: 208 DRQLRITRKDVTKLP 222


>gi|118785251|ref|XP_314504.3| AGAP010537-PA [Anopheles gambiae str. PEST]
 gi|116127995|gb|EAA09931.3| AGAP010537-PA [Anopheles gambiae str. PEST]
          Length = 286

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +D ++++K       L+ + ++E+G G G LT+ L  L +  V+ I+  ++   + K+ +
Sbjct: 83  VDKSLIQK----PNVLESLNILEVGCGGGILTEALAKLHSN-VVGIDPSEKLISVAKEHA 137

Query: 91  SQ 92
            +
Sbjct: 138 KE 139


>gi|27468183|ref|NP_764820.1| methyltransferase [Staphylococcus epidermidis ATCC 12228]
 gi|57867035|ref|YP_188722.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           RP62A]
 gi|38605282|sp|Q8CSC7|PRMA_STAES RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|81819386|sp|Q5HNW8|PRMA_STAEQ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|27315729|gb|AAO04864.1|AE016748_98 probable methyltransferase [Staphylococcus epidermidis ATCC 12228]
 gi|57637693|gb|AAW54481.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           RP62A]
 gi|329737421|gb|EGG73675.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           VCU028]
          Length = 312

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                +VI++G G G L+     LG +++  ++ D+    + K+   ++   + +E +  
Sbjct: 171 VKPTDSVIDVGTGSGILSIASHLLGVQRIKALDIDEMAVNVAKENFKKNHCDDAIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKNENEKF 240


>gi|25010241|ref|NP_734636.1| hypothetical protein gbs0166 [Streptococcus agalactiae NEM316]
 gi|77413385|ref|ZP_00789578.1| Unknown [Streptococcus agalactiae 515]
 gi|23094593|emb|CAD45811.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160555|gb|EAO71673.1| Unknown [Streptococcus agalactiae 515]
          Length = 324

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            + + V+EIG+G GNL Q LL   ++++  + IE D     +   I+    +  + IQ+D
Sbjct: 108 QETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSSAQFIQED 167

Query: 104 ALK 106
           A++
Sbjct: 168 AVR 170


>gi|307942351|ref|ZP_07657702.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseibium sp.
           TrichSKD4]
 gi|307774637|gb|EFO33847.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseibium sp.
           TrichSKD4]
          Length = 404

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            + +      TV+EIG G G   + +      KV  +   Q+ +   ++ + +     ++
Sbjct: 181 VKGADIQPDHTVLEIGCGWGGFAEFIGKEVGAKVKALTISQEQYDFARERTFKAGLNEKV 240

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
                  V F+ + + +            I +  +F  +    WP ++E L+   
Sbjct: 241 ------DVCFQDYRDETGKYDR-------IASIEMFEAVGEKYWPTYFEKLSSCL 282


>gi|307825656|ref|ZP_07655873.1| protein-L-isoaspartate O-methyltransferase [Methylobacter
           tundripaludum SV96]
 gi|307733233|gb|EFO04093.1| protein-L-isoaspartate O-methyltransferase [Methylobacter
           tundripaludum SV96]
          Length = 230

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 6/139 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEI 99
           +   +    TV+EIG G G     +L+   ++V  +E  ++     +    +   N + +
Sbjct: 77  DLLNTQPTDTVLEIGTGSGY-QAAILSKLVKQVYSLEIIEELSTKARRRLEKLGYNNVTV 135

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
              D     + +       I + A  PY    + L + +               +Q+ + 
Sbjct: 136 YTGDG-HFGWPEHAPFDG-IIVTAATPYI--PQALIDQLRPGARLVIPVGFPFNYQELMV 191

Query: 160 ERITAQKNSPHYGRLSVLT 178
               A         L V  
Sbjct: 192 VEKKADGKVETRNILGVSF 210


>gi|302539153|ref|ZP_07291495.1| predicted protein [Streptomyces sp. C]
 gi|302448048|gb|EFL19864.1| predicted protein [Streptomyces sp. C]
          Length = 388

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 41  ESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           ++     G   +E+G GPG +L       G      +E+D       +           +
Sbjct: 107 QALELGSGQRYLELGPGPGVSLALAAAITGPGLATGVERDGPMAAFAQRNLDHLGVGAVV 166

Query: 100 IQDDALK 106
           I+ DAL+
Sbjct: 167 IEGDALE 173


>gi|301053082|ref|YP_003791293.1| methyltransferase [Bacillus anthracis CI]
 gi|300375251|gb|ADK04155.1| methyltransferase [Bacillus cereus biovar anthracis str. CI]
          Length = 258

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +++ +S  S+    +++IG G G  T+ L  +GA+ V+ ++  ++     K+  S   N 
Sbjct: 24  REMIKSITSIQNKRIVDIGCGGGIYTKELALMGAKSVVGLDFSKEILQAAKENCSGFSN- 82

Query: 97  LEIIQDDA 104
           +  I  DA
Sbjct: 83  ISFIHGDA 90


>gi|237654116|ref|YP_002890430.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Thauera
           sp. MZ1T]
 gi|237625363|gb|ACR02053.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Thauera
           sp. MZ1T]
          Length = 217

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    I  KI ++       TV+EIGAG G     LL   A  V  +E + +   +
Sbjct: 57  GQVMLK-PVIEGKILQALRVTKSDTVLEIGAGSGWF-AALLAARAEWVRTMEIEPELVKL 114


>gi|163797146|ref|ZP_02191101.1| putative sarcosine-dimethylglycine methyltransferase [alpha
           proteobacterium BAL199]
 gi|159177662|gb|EDP62215.1| putative sarcosine-dimethylglycine methyltransferase [alpha
           proteobacterium BAL199]
          Length = 281

 Score = 39.8 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 58/174 (33%), Gaps = 21/174 (12%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
           +++A+        TV+++G+G G L + L       V+     ++     ++++++    
Sbjct: 59  ERMAKGVELGSDDTVLDVGSGYGALARFLAKRYGCDVVASNISERELEWGRELTAEQGLD 118

Query: 95  NRLEIIQDDA-----------LKVDFEKFFNISSPIRIIANLPYNI--GTRLLFNWISAD 141
           +++     D                 E F + +    ++      +  G  ++F  +   
Sbjct: 119 DKVSFAWADFHALPFEDDGFDYYWSQEAFLHAADKAAVLTEARRVLKPGGAIVFTDLLVR 178

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVF 195
              P  +       + + +R+ +         LS L           + S HV 
Sbjct: 179 DGTPAADR------ERIYDRVKSPDMWDSGAYLSALEQAGFNVETHENWSEHVA 226


>gi|297193706|ref|ZP_06911104.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151889|gb|EFH31400.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 279

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS-SQHPNRLEI 99
           ++       V++IG G G+ T++     A      ++  +      ++ + ++H   +  
Sbjct: 42  AAAIGREDAVLDIGCGAGSTTRLAARRVADGHATGVDLSRPMLERARESARAEHLGNVTF 101

Query: 100 IQDDA 104
              DA
Sbjct: 102 EHGDA 106


>gi|241758916|ref|ZP_04757028.1| protein-L-isoaspartate O-methyltransferase [Neisseria flavescens
           SK114]
 gi|241320737|gb|EER56970.1| protein-L-isoaspartate O-methyltransferase [Neisseria flavescens
           SK114]
          Length = 218

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++A+        TV+EIG G G  T  LL+  A KV+  + D       +  + +
Sbjct: 63  PKVVARLAQGLKLKKDETVLEIGTGSGYAT-ALLSKLAGKVVTDDID----AQQQQRAKK 117

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             + L     D ++ +     +  +P   I           +      +        + +
Sbjct: 118 VLDELGFTNVDYVQNNGLTEASQGAPFDAIYVGGAVDSVPEILK----EQLKDGGRMVVI 173

Query: 153 LFQKEVGERITAQKNSPHYG 172
           + +K V   +   +N   + 
Sbjct: 174 VGRKPVQRALLLTRNGNEFS 193


>gi|209965320|ref|YP_002298235.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodospirillum
           centenum SW]
 gi|209958786|gb|ACI99422.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodospirillum
           centenum SW]
          Length = 416

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 17/114 (14%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNR 96
           IA   G   G  V+EIG G G   +        +V  I    + F    +    +   +R
Sbjct: 192 IARRMGLEPGHHVLEIGCGWGGFAEFAAGEVGARVTGITISPRQFAFASERIQRAGLGDR 251

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +EI   D                R  A     I +  +F  +    WP F+ ++
Sbjct: 252 VEIRLQD---------------YRDTAGRFDRIASIEMFEAVGERYWPDFFGTV 290


>gi|157363161|ref|YP_001469928.1| methyltransferase small [Thermotoga lettingae TMO]
 gi|157313765|gb|ABV32864.1| methyltransferase small [Thermotoga lettingae TMO]
          Length = 228

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQDD 103
            D   VIE+G   G +   + +   R V+ I+KD     + +     +    +++++   
Sbjct: 44  KDQRKVIELGCATGVVCAYIASKYNRYVVGIDKDPDLIHLAQRTIQMNNLYGKVDLVN-- 101

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIG 130
               D  KFF   S   +I+N P++I 
Sbjct: 102 ISCKDVSKFFAAESFDMVISNPPHHIT 128


>gi|90418202|ref|ZP_01226114.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337874|gb|EAS51525.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 348

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ E+     G  +++   G G  T+ +L  GA  VI I++D       + ++  
Sbjct: 21  PVLLAEVLEALAPKPGEVIVDGTFGAGGYTRAILDAGAD-VIAIDRDPAAIATARGLAEG 79

Query: 93  HPNRLEIIQD 102
           +  RL  ++ 
Sbjct: 80  YDGRLAPVEG 89


>gi|90420763|ref|ZP_01228669.1| phospholipid N-methyltransferase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335054|gb|EAS48815.1| phospholipid N-methyltransferase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 208

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRLEII 100
           +       V+E+G G G +TQ L+  G  +  ++++E   +F  +L+   ++ P  L +I
Sbjct: 58  ADFDADSRVLELGPGTGVVTQCLVDQGVPEAALVLVEYSPEFCILLR---ARFPAAL-VI 113

Query: 101 QDDA 104
           Q DA
Sbjct: 114 QGDA 117


>gi|70727523|ref|YP_254439.1| hypothetical protein SH2524 [Staphylococcus haemolyticus JCSC1435]
 gi|68448249|dbj|BAE05833.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 241

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 23/178 (12%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQ 101
                  ++++ AG G +  +L   G++ +  IE  +Q   + +     +   NRL I  
Sbjct: 39  EVRKNDKILDLCAGNGVIALLLSAKGSQTIESIEIQEQLADMARRSFEYNDLTNRLLIHH 98

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D LK D  + F  S    +  N PY    +   +    +        +    +      
Sbjct: 99  MD-LK-DVYQNFKPSQYTLVTCNPPYFKSNQ--RHQHQKEAHKIARHEIMCTLED---CM 151

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDI----------SPHVFFPSPKVTSTVIHFI 209
           + A+      GRL ++     +A  + D+             V F   K+  + +  +
Sbjct: 152 LAARHLLKQGGRL-MMVH---RAERLMDVLTEMRKASIEPKRVVFIYSKIDKSAVTIV 205


>gi|317968081|ref|ZP_07969471.1| glycosyltransferase [Synechococcus sp. CB0205]
          Length = 464

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 8/94 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G+ V+E+G G G+L   L  L     + IE D     + ++   +    L I+  +A +
Sbjct: 31  PGLRVLEVGCGTGDL---LAHLQPAHGVGIELDPDVAAVARERHPE----LRILATNA-E 82

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                    S P  +I         + +   +  
Sbjct: 83  TMTPASIGESQPFDVILLPNTLNTLQDVQGVLER 116


>gi|294339541|emb|CAZ87900.1| tRNA (m7G46) methyltransferase, SAM-dependent [Thiomonas sp. 3As]
          Length = 236

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 17/140 (12%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
                V+EIG G G+ T  +         I +E        +L+ I +   + L I+Q D
Sbjct: 62  RAAPRVLEIGFGMGDATAQIAAAKPETDFIGVEVHPPGVGALLQRIDAAKLSNLSIVQHD 121

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           A++V                  PY++      +    D WP        L Q E      
Sbjct: 122 AVQVLRHMIA------------PYSLDG---LHIYFPDPWPKKRHHKRRLIQPEFVRLAI 166

Query: 164 AQKNSPHYGRLSVLTGWRTK 183
           ++     Y   +       +
Sbjct: 167 SRLRPGGYLHCATDWQPYAE 186


>gi|146312703|ref|YP_001177777.1| methyltransferase small [Enterobacter sp. 638]
 gi|262828272|sp|A4WDE6|TRMN6_ENT38 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|145319579|gb|ABP61726.1| methyltransferase small [Enterobacter sp. 638]
          Length = 245

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNIL-----KKIA--ESSGSLDGITVIEIGAGPGN 60
              K +L       K    Q F+             I     +       +++IG+G G 
Sbjct: 2   SQPKALLRRDGFTFK----QFFVAHDRCAMKVGTDGILLGAWAPVAGVKRILDIGSGSGL 57

Query: 61  LTQMLLTLGARKVIV--IEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNIS 116
           L  ML     + V +  +E D Q      + +++ P   R+++   D L    E+    +
Sbjct: 58  LALMLAQRTEQHVTIDSVELDAQAANQASENAAESPWAERVQVQCADILAWAPEQ---TA 114

Query: 117 SPIRIIANLPYN 128
               I++N PY 
Sbjct: 115 RYDLIVSNPPYY 126


>gi|108762574|ref|YP_631604.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Myxococcus
           xanthus DK 1622]
 gi|123374498|sp|Q1D6W9|PIMT_MYXXD RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|108466454|gb|ABF91639.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Myxococcus
           xanthus DK 1622]
          Length = 212

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  + E+        V+EIG G G  T  LL+L  R+V  +E   +     +++  +
Sbjct: 58  PYVVALMTEALQLQGDERVLEIGTGSGYQT-ALLSLLCREVYSVEIVPELAQSAREVLGR 116

Query: 93  HP-NRLEIIQDD 103
                +   + D
Sbjct: 117 QGFENVSFREGD 128


>gi|145220511|ref|YP_001131220.1| biotin biosynthesis protein BioC [Prosthecochloris vibrioformis DSM
           265]
 gi|145206675|gb|ABP37718.1| biotin biosynthesis protein BioC [Chlorobium phaeovibrioides DSM
           265]
          Length = 260

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
            +G      V+EIGAG G LT++LL       +            ++   +   RL I +
Sbjct: 42  HAGEERLGRVLEIGAGSGLLTELLLEAFPVASLTAN---DLVGECREPLREIARRLRIAE 98

Query: 102 DDALKVDFEKFFNISSPIRII 122
              LK D E+   +     ++
Sbjct: 99  FSFLKGDIEECGELPGSQDLV 119


>gi|319790156|ref|YP_004151789.1| methyltransferase [Thermovibrio ammonificans HB-1]
 gi|317114658|gb|ADU97148.1| methyltransferase [Thermovibrio ammonificans HB-1]
          Length = 191

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKF 112
           AG G +    L+ GA KV+ +E D++F  ++++        P R EII  D  +      
Sbjct: 54  AGTGAVGIEALSRGASKVVFVENDRRFCNLIRENLCSLRVPPERYEIICGDYTEALKRLA 113

Query: 113 FNISSPIRIIANLPY 127
                   I A+ PY
Sbjct: 114 KRGEKFDFIYADPPY 128


>gi|302383427|ref|YP_003819250.1| ArsR family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194055|gb|ADL01627.1| transcriptional regulator, ArsR family [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 320

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRL 97
           IA ++G      V+++G G G +   LL   AR  I ++  Q    I + ++     +++
Sbjct: 142 IARAAGPGPFDRVVDLGTGSGRMLT-LLGSKARMSIGLDLSQNMLNIARANVVKAGLDKV 200

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           E+   D       +  N S+ + ++  + + +         +A    P  + L + F
Sbjct: 201 ELRHGDIFAT---RLPNQSADLVLVHQVLHYLVDPAAAVAEAARLVSPGGKLLIVDF 254


>gi|254564064|ref|YP_003071159.1| hypothetical protein METDI5751 [Methylobacterium extorquens DM4]
 gi|254271342|emb|CAX27354.1| putative protein-L-isoaspartate O-methyltransferase
           [Methylobacterium extorquens DM4]
          Length = 216

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ ++     G   +++G G G    ML  LGA +V+ +E D       ++    
Sbjct: 68  PMLLARLIQALKIRPGTRALDVGTGYGYGAAMLRQLGA-EVVALESDPDLIAAARERLGD 126

Query: 93  HPNRLE 98
               ++
Sbjct: 127 TVGLVQ 132


>gi|229090498|ref|ZP_04221736.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus Rock3-42]
 gi|228692848|gb|EEL46569.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus Rock3-42]
          Length = 258

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +++ +S  S+    +++IG G G  T+ L  +GA+ V+ ++  ++     K+  S   N 
Sbjct: 24  REMIKSITSIQNKRIVDIGCGGGIYTKELALMGAKSVVGLDFSKEILQAAKENCSGFSN- 82

Query: 97  LEIIQDDA 104
           +  I  DA
Sbjct: 83  ISFIHGDA 90


>gi|147677215|ref|YP_001211430.1| ribosomal protein L11 methyltransferase [Pelotomaculum
           thermopropionicum SI]
 gi|189037699|sp|A5D3Y3|PRMA_PELTS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|146273312|dbj|BAF59061.1| ribosomal protein L11 methylase [Pelotomaculum thermopropionicum
           SI]
          Length = 308

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
              G TV ++G G G L      LGA +V+ ++ D     +    + ++    +++++Q 
Sbjct: 168 VRPGGTVYDVGTGSGVLAVAAARLGAGRVVAVDIDPLACRVAAGNAERNGVAGKVQVVQG 227

Query: 103 DALK 106
           + L+
Sbjct: 228 NLLE 231


>gi|111220438|ref|YP_711232.1| hypothetical protein FRAAL0970 [Frankia alni ACN14a]
 gi|111147970|emb|CAJ59636.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 246

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            L G  VI++GAG G  T++LL  GAR V+ +E        L D S   P
Sbjct: 30 RPLAGTDVIDVGAGTGIATRLLLARGAR-VVAVEPGPSMLARLLDRSPGVP 79


>gi|86741323|ref|YP_481723.1| tRNA (adenine-58-N(1)-) methyltransferase [Frankia sp. CcI3]
 gi|86568185|gb|ABD11994.1| tRNA (adenine-58-N(1)-) methyltransferase [Frankia sp. CcI3]
          Length = 344

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I   +    G  V+E G G G L+  LL       +++  E+   F  I +      
Sbjct: 116 AAQIVTYADIFPGARVLEAGVGSGALSCSLLRAIGDCGRLVSYERRADFAEIARRNIEAF 175


>gi|219851893|ref|YP_002466325.1| MCP methyltransferase, CheR-type [Methanosphaerula palustris E1-9c]
 gi|219546152|gb|ACL16602.1| MCP methyltransferase, CheR-type [Methanosphaerula palustris E1-9c]
          Length = 274

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD 88
           +D   ++ + + +G   G+ V+++G G G+++ +L  L  +  K+  I++D     I ++
Sbjct: 25  VDEMTVRLLVD-AGIGPGMRVLDVGCGSGDVSLLLAKLVGKDGKITGIDRDGPSLEIARE 83

Query: 89  ISSQ-HPNRLEIIQDDA 104
              + H + +  I+ D 
Sbjct: 84  RVRKLHLSNITFIKGDI 100


>gi|254383738|ref|ZP_04999087.1| methyltransferase [Streptomyces sp. Mg1]
 gi|194342632|gb|EDX23598.1| methyltransferase [Streptomyces sp. Mg1]
          Length = 291

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDIS 90
           D    ++   S G   G   +E GAG G + + L    GA +V+ +++D      L    
Sbjct: 50  DPFTRQR-LRSLGVGPGWRCLEAGAGTGTIARWLAEEAGADEVVALDRDTSRLEPLA--- 105

Query: 91  SQHPNRLEIIQDDALKVDFEK 111
                RL +   D  ++  E 
Sbjct: 106 ---GPRLRVHTADLTRIADEP 123


>gi|330816574|ref|YP_004360279.1| Putative phospholipid N-methyltransferase [Burkholderia gladioli
           BSR3]
 gi|327368967|gb|AEA60323.1| Putative phospholipid N-methyltransferase [Burkholderia gladioli
           BSR3]
          Length = 192

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
              V+E+GAG G  T+ LL  G   R +I+++  ++F  +L +         +I+  DA 
Sbjct: 46  DGPVLELGAGTGVFTRALLQRGLAQRDLILVDNSERFGSLLAERFPNA----KIVIGDAA 101

Query: 106 KVDFEKFFNISSPIRIIANLP 126
            +         S   +++ LP
Sbjct: 102 ALAPLGVALPQSVGAVVSGLP 122


>gi|307352675|ref|YP_003893726.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307155908|gb|ADN35288.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 279

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 29  FL----LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           FL     + + +++  +  G     +++++GAGPG L   L  L    V  +E  +    
Sbjct: 41  FLARSKNNPDRIREFVDLLGPDKECSILDVGAGPGTLAVPLAELSGH-VTAVEPSKGMAD 99

Query: 85  ILKDISSQHP-NRLEII 100
           ++ D +++   + L+I+
Sbjct: 100 VMADYAAERGVSNLDIV 116


>gi|229826876|ref|ZP_04452945.1| hypothetical protein GCWU000182_02260 [Abiotrophia defectiva ATCC
           49176]
 gi|229788494|gb|EEP24608.1| hypothetical protein GCWU000182_02260 [Abiotrophia defectiva ATCC
           49176]
          Length = 265

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)

Query: 3   MNNKSHSLKTILSHY----KIIPKKYMGQ--NFLLDLNILKKIAESSGSLDGITVIEIGA 56
           M N+   L+TI   +    ++   +  GQ   F+  +N + K      +  G  ++EIGA
Sbjct: 1   MENRIEMLRTIYGKFDEDKRLTASRQ-GQLEYFIT-MNYVDK-----YTKPGDKILEIGA 53

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
           G G  +  L   G   V  +E  +    +LK  +    N +   Q DAL
Sbjct: 54  GTGRYSIELAKNGYD-VTAVELVESNLEVLKKNAEGLEN-ISAFQGDAL 100


>gi|170032109|ref|XP_001843925.1| spermine synthase [Culex quinquefasciatus]
 gi|167871874|gb|EDS35257.1| spermine synthase [Culex quinquefasciatus]
          Length = 371

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 25/119 (21%)

Query: 11  KTILSHYKIIPKKYMGQNFLL-DLNILKKIAES------------SGSLDGITVIEIGAG 57
           ++     +I+  K +G N L+ D   L+ IAE+              +  G  +  +G G
Sbjct: 146 RSDFQKIQIVHSKSLG-NMLVLDE--LQNIAEADLIYTETLMRRGIENYKGKEICILGGG 202

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNI 115
            G L   LL    + V+++E D        ++  Q  N+ +  I  D L+      F I
Sbjct: 203 DGALLYELLKEEPKHVVMLEID--------ELVMQACNKYMNSICGDVLERRKADDFEI 253


>gi|170744610|ref|YP_001773265.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium sp. 4-46]
 gi|168198884|gb|ACA20831.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium sp. 4-46]
          Length = 221

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF----PILKD 88
            +++  +  +     G   +EIG G G  T +LL LG   V  +E+           L  
Sbjct: 68  PSVVAAMLTALEPRPGSRALEIGTGSGYATALLLRLGCAMVESLERYATLASDAQARLDA 127

Query: 89  ISSQHPNRLEIIQDDALKVDFEKF 112
                  RL I    A + D   F
Sbjct: 128 AGLGGAVRLRIADGCAREKDVTPF 151


>gi|13471557|ref|NP_103123.1| S-adenosyl-methyltransferase MraW [Mesorhizobium loti MAFF303099]
 gi|20139098|sp|Q98KA5|RSMH_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|14022299|dbj|BAB48909.1| mll1565 [Mesorhizobium loti MAFF303099]
          Length = 338

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E+    +   +I+   G G  T+ +L  GA  V+ I++D       +D+  Q   RL ++
Sbjct: 28  EALAPAERDIIIDGTFGAGGYTRAILATGA-SVVAIDRDPDAIAAGRDLEVQSGGRLRLV 86

Query: 101 QDDALKVD 108
           Q     +D
Sbjct: 87  QAPFSTLD 94


>gi|300310389|ref|YP_003774481.1| cyclopropane-fatty-acyl-phospholipid synthase [Herbaspirillum
           seropedicae SmR1]
 gi|300073174|gb|ADJ62573.1| cyclopropane-fatty-acyl-phospholipid synthase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           ++I +  G   G  V+EIG G G   +    LG R
Sbjct: 178 QRIVDQLGLRAGDRVLEIGCGWGGFAEHAARLGIR 212


>gi|291522490|emb|CBK80783.1| Type I restriction-modification system methyltransferase subunit
           [Coprococcus catus GD/7]
          Length = 412

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKD 88
           L   +I   +A+      G ++++I  G G L        G   +   E+D+  + +   
Sbjct: 138 LTPEHIADFMAKVINVQPGDSILDICCGTGALLNAASHYNGGGMLYGCERDEGVYDMASI 197

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
                   + +   D  K+       ++    +  N PY +
Sbjct: 198 SQGVRYENMRLFHSDCYKLRSSNPRLMADKGLL--NPPYAM 236


>gi|240141083|ref|YP_002965563.1| L-isoaspartate protein carboxylmethyltransferase type II
          [Methylobacterium extorquens AM1]
 gi|240011060|gb|ACS42286.1| L-isoaspartate protein carboxylmethyltransferase type II
          [Methylobacterium extorquens AM1]
          Length = 206

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            I+  + E+     G  V+E+GAG G    +L  +GA +V  IE+
Sbjct: 54 PYIVALMIEALALRPGDRVLEVGAGCGYAAAVLARMGA-QVFAIER 98


>gi|94502134|ref|ZP_01308635.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
 gi|94425736|gb|EAT10743.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
          Length = 448

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 32  DLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +  + +++ +++          TV+++ AG GN T  L    A++V  +E D++    L+
Sbjct: 285 NGRVNEQMVQTALQWLNVKAHETVLDLFAGLGNFTLPLAQH-AKRVCAVELDKKMVADLQ 343

Query: 88  DISSQH 93
             + ++
Sbjct: 344 HNAQRN 349


>gi|30262786|ref|NP_845163.1| N-methyl-transferase-related protein [Bacillus anthracis str. Ames]
 gi|49185632|ref|YP_028884.1| N-methyl-transferase-related protein [Bacillus anthracis str.
           Sterne]
 gi|165868500|ref|ZP_02213160.1| putative methyltransferase [Bacillus anthracis str. A0488]
 gi|167632176|ref|ZP_02390503.1| putative methyltransferase [Bacillus anthracis str. A0442]
 gi|167637888|ref|ZP_02396167.1| putative methyltransferase [Bacillus anthracis str. A0193]
 gi|170685347|ref|ZP_02876571.1| putative methyltransferase [Bacillus anthracis str. A0465]
 gi|170704610|ref|ZP_02895076.1| putative methyltransferase [Bacillus anthracis str. A0389]
 gi|177649803|ref|ZP_02932805.1| putative methyltransferase [Bacillus anthracis str. A0174]
 gi|190565442|ref|ZP_03018362.1| putative methyltransferase [Bacillus anthracis Tsiankovskii-I]
 gi|227814372|ref|YP_002814381.1| putative methyltransferase [Bacillus anthracis str. CDC 684]
 gi|229599931|ref|YP_002867091.1| putative methyltransferase [Bacillus anthracis str. A0248]
 gi|254685379|ref|ZP_05149239.1| putative methyltransferase [Bacillus anthracis str. CNEVA-9066]
 gi|254722786|ref|ZP_05184574.1| putative methyltransferase [Bacillus anthracis str. A1055]
 gi|254737834|ref|ZP_05195537.1| putative methyltransferase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254742992|ref|ZP_05200677.1| putative methyltransferase [Bacillus anthracis str. Kruger B]
 gi|254752149|ref|ZP_05204186.1| putative methyltransferase [Bacillus anthracis str. Vollum]
 gi|254760668|ref|ZP_05212692.1| putative methyltransferase [Bacillus anthracis str. Australia 94]
 gi|291612196|ref|YP_052628.2| N-methyl-transferase-related protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|30257418|gb|AAP26649.1| N-methyl-transferase-related protein [Bacillus anthracis str. Ames]
 gi|49179559|gb|AAT54935.1| N-methyl-transferase-related protein [Bacillus anthracis str.
           Sterne]
 gi|164715226|gb|EDR20743.1| putative methyltransferase [Bacillus anthracis str. A0488]
 gi|167514437|gb|EDR89804.1| putative methyltransferase [Bacillus anthracis str. A0193]
 gi|167532474|gb|EDR95110.1| putative methyltransferase [Bacillus anthracis str. A0442]
 gi|170130411|gb|EDS99272.1| putative methyltransferase [Bacillus anthracis str. A0389]
 gi|170670707|gb|EDT21446.1| putative methyltransferase [Bacillus anthracis str. A0465]
 gi|172084877|gb|EDT69935.1| putative methyltransferase [Bacillus anthracis str. A0174]
 gi|190563469|gb|EDV17434.1| putative methyltransferase [Bacillus anthracis Tsiankovskii-I]
 gi|224552857|gb|AAT70136.2| putative methyltransferase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|227003359|gb|ACP13102.1| putative methyltransferase [Bacillus anthracis str. CDC 684]
 gi|229264339|gb|ACQ45976.1| putative methyltransferase [Bacillus anthracis str. A0248]
          Length = 247

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N LKK+ +           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  IKNENWLKKVTKEVQEQIGYPFQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  N + I   D  K++FE+ F++
Sbjct: 76  VMFAKEHSTNDIVIHCADFYKINFEEKFDV 105


>gi|65320110|ref|ZP_00393069.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str.
           A2012]
          Length = 231

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N LKK+ +           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  IKNENWLKKVTKEVQEQIGYPFQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  N + I   D  K++FE+ F++
Sbjct: 76  VMFAKEHSTNDIVIHCADFYKINFEEKFDV 105


>gi|324998365|ref|ZP_08119477.1| Methyltransferase type 11 [Pseudonocardia sp. P1]
          Length = 245

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           ++   +G   G TV+EIG G GN + +    +    VI ++ D +   I +  ++     
Sbjct: 33  RLVAQAGIQPGSTVLEIGCGTGNVVLRAKRAVPGATVIGLDPDGEALGIARRKAADEGLA 92

Query: 97  LEIIQD 102
           LE+ + 
Sbjct: 93  LELDEG 98


>gi|310799422|gb|EFQ34315.1| methyltransferase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 270

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           ++L D  I    A+  G   G  V++IG+G G   + L          IE  +    I +
Sbjct: 47  HYLGDAAI-DNAAKELGLKAGERVLDIGSGFGGTGRYLYRHYGVATTGIELQKDIHEIAQ 105

Query: 88  DIS--SQHPNRLEIIQDDALKVDFE 110
            I+  S   +R      + L++D  
Sbjct: 106 TINKRSGAGDRATSFNGNFLELDPS 130


>gi|294629831|ref|ZP_06708391.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. e14]
 gi|292833164|gb|EFF91513.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. e14]
          Length = 375

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 41  ESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
            +    +   V+EIG G G    L      +G+  V+ +E D+      ++       R 
Sbjct: 93  AALDVQETSRVLEIGTGTGWNAALLSE--RVGSGNVVSVEVDEANAKAARERIEAAGYRP 150

Query: 98  EIIQDD 103
            +I  D
Sbjct: 151 TLIVGD 156


>gi|291237043|ref|XP_002738440.1| PREDICTED: methyltransferase, putative-like [Saccoglossus
           kowalevskii]
          Length = 308

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 28  NFLLDLNILKKIAESSGSLDGI----TVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQF 82
           NF  D +   +  E   +         ++E+G G GN    LL       +   +   + 
Sbjct: 71  NFYKDRHWTTREFEELRNESSDGSKKILLEVGCGVGNFLFPLLEENPHLFIYACDFSPRA 130

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
              +KD +   P+R+E+ Q D L  D      +   + I+  + 
Sbjct: 131 VQFVKDNARYEPSRIEVFQCD-LTTDLLSSRIVDCNVNIVTMIF 173


>gi|302865711|ref|YP_003834348.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302568570|gb|ADL44772.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 244

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          +V E+GAG G  T++L  LGA  +  +E D +    L +   +
Sbjct: 36 SVAEVGAGTGKGTEVLARLGA-PLTCVEPDARMAARLAERFPE 77


>gi|121534357|ref|ZP_01666181.1| methyltransferase small [Thermosinus carboxydivorans Nor1]
 gi|121307127|gb|EAX48045.1| methyltransferase small [Thermosinus carboxydivorans Nor1]
          Length = 252

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 36  LKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISS 91
           L  I  +  +    G T +++G G G +  +L+  GA +V+ +E D       +     +
Sbjct: 33  LDAIVLAHFATVRTGATAVDLGTGTGVIGLLLVARGAGRVVGVEIDAVAAERAQRSVQLN 92

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
               ++ ++  D  ++  +      +   ++AN PY
Sbjct: 93  GLTKQMAVVAADLRRL--KGVLPAGAWDLVVANPPY 126


>gi|114776933|ref|ZP_01451976.1| Phospholipid N-methyltransferase-like protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114553019|gb|EAU55450.1| Phospholipid N-methyltransferase-like protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 148

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ- 101
            L+   V+E GAG G +T+ LL  G     + V E  +Q    LK+        + +I  
Sbjct: 6   PLETEVVVEFGAGTGPMTKALLDTGFSPDNLYVFELSEQLCLHLKNRFPA----VHVINA 61

Query: 102 --DDALKVD 108
              D + +D
Sbjct: 62  SAADIMDLD 70


>gi|330965949|gb|EGH66209.1| site-specific DNA-methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 489

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 12/114 (10%)

Query: 25  MGQNFLLDLNILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGAR--------KVI 74
            GQ F+   ++ + +A            +++ GAG G L+   L   A         +  
Sbjct: 27  FGQ-FMTPSSVARFMASLFPPSAQKTCRLLDAGAGVGALSCAFLDRWATGGFCFESVEAT 85

Query: 75  VIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             E D +    L      +   R  I+  D +++   +          I N PY
Sbjct: 86  AYEIDDKLRGHLAQHLGGYSCLRPRILAGDYIELATAEGLEDRGYTHAILNPPY 139


>gi|329764908|ref|ZP_08256497.1| tRNA methyltransferase complex GCD14 subunit [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329138577|gb|EGG42824.1| tRNA methyltransferase complex GCD14 subunit [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 283

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKD 88
           I   +G   G  ++EIG G G+LT  + +       V   + D  F  I + 
Sbjct: 88  IIARAGIGSGQKILEIGTGSGSLTSFVASVVKPRGHVYTFDVDDNFMKIAEK 139


>gi|325978236|ref|YP_004287952.1| type 11 methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178164|emb|CBZ48208.1| methyltransferase type 11 [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 249

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
                ++++G G G LT  L  L A K I ++  +       + + +H   ++ +  DAL
Sbjct: 30  NKNQHILDLGCGTGTLTSQLADL-ADKTIGLDSSESMI----EKAREHYADIQFVVGDAL 84

Query: 106 KVDFEKFFNI 115
            + FEK F++
Sbjct: 85  ALPFEKQFDV 94


>gi|311899467|dbj|BAJ31875.1| putative methyltransferase [Kitasatospora setae KM-6054]
          Length = 191

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           + +  G  V+E+G G G  T  LL       ++  +E D +   +        P RLE++
Sbjct: 39  AAARPGGRVLELGTGAGVGTSWLLSGMDPTARLTSVELDAEVAAVAAGRLGADP-RLELV 97

Query: 101 QDD 103
             D
Sbjct: 98  VGD 100


>gi|294816678|ref|ZP_06775320.1| Methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294321493|gb|EFG03628.1| Methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 354

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             ++GS     V E+G GPG +T  L  LG   V  ++       + ++       R E+
Sbjct: 188 VRAAGSG---LVAELGCGPGPVTAHLRDLG-LDVFGVDLSPVLIGLARETYPDL--RFEV 241

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
              DAL +   +   I S   +I   P ++
Sbjct: 242 GSMDALDLADGQLQGIVSWYSVIHASPQDV 271


>gi|258652100|ref|YP_003201256.1| methyltransferase [Nakamurella multipartita DSM 44233]
 gi|258555325|gb|ACV78267.1| methyltransferase [Nakamurella multipartita DSM 44233]
          Length = 189

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK----DISSQHPNR 96
           +++G L G  V+++ AG G L   L + GA   + +EKD+     L+     +       
Sbjct: 38  QATGGLVGARVLDLWAGTGALGLELASRGASSAVFVEKDRSALATLRTNVDTLHEDGGPT 97

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           L ++  D                 ++A+ PY++    +   ++A
Sbjct: 98  LTVLAADV-TAPALTARLGGPFDIVLADPPYDLDGASVRGVLAA 140


>gi|110736374|dbj|BAF00156.1| arginine methyltransferase like protein [Arabidopsis thaliana]
          Length = 529

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
            G  V+++GAG G L+      GA+ V  +E   +     + + + +P   +R+ +I+ 
Sbjct: 183 AGRVVVDVGAGSGILSMFAAQAGAKHVYAVEA-SEMAEYARKLIAGNPLFADRITVIKG 240


>gi|30680066|ref|NP_187349.2| protein arginine N-methyltransferase family protein [Arabidopsis
           thaliana]
 gi|51536598|gb|AAU05537.1| At3g06930 [Arabidopsis thaliana]
 gi|332640956|gb|AEE74477.1| histone-arginine methyltransferase CARM1 [Arabidopsis thaliana]
          Length = 534

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
            G  V+++GAG G L+      GA+ V  +E   +     + + + +P   +R+ +I+ 
Sbjct: 183 AGRVVVDVGAGSGILSMFAAQAGAKHVYAVEA-SEMAEYARKLIAGNPLFADRITVIKG 240


>gi|6729000|gb|AAF26997.1|AC016827_8 putative arginine methyltransferase [Arabidopsis thaliana]
          Length = 388

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
            G  V+++GAG G L+      GA+ V  +E   +     + + + +P   +R+ +I+ 
Sbjct: 37  AGRVVVDVGAGSGILSMFAAQAGAKHVYAVEA-SEMAEYARKLIAGNPLFADRITVIKG 94


>gi|28393408|gb|AAO42127.1| putative arginine methyltransferase [Arabidopsis thaliana]
          Length = 535

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
            G  V+++GAG G L+      GA+ V  +E   +     + + + +P   +R+ +I+ 
Sbjct: 183 AGRVVVDVGAGSGILSMFAAQAGAKHVYAVEA-SEMAEYARKLIAGNPLFADRITVIKG 240


>gi|30680069|ref|NP_850528.1| protein arginine N-methyltransferase family protein [Arabidopsis
           thaliana]
 gi|156630872|sp|Q84W92|ANM13_ARATH RecName: Full=Probable histone-arginine methyltransferase 1.3;
           Short=AtPRMT13; AltName: Full=Coactivator-associated
           methyltransferase 1A; AltName: Full=Protein arginine
           N-methyltransferase 4B; Short=AtPRMT4B
 gi|332640957|gb|AEE74478.1| histone-arginine methyltransferase CARM1 [Arabidopsis thaliana]
          Length = 535

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
            G  V+++GAG G L+      GA+ V  +E   +     + + + +P   +R+ +I+ 
Sbjct: 183 AGRVVVDVGAGSGILSMFAAQAGAKHVYAVEA-SEMAEYARKLIAGNPLFADRITVIKG 240


>gi|15678751|ref|NP_275867.1| methyltransferase related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3183225|sp|O26820|TMG10_METTH RecName: Full=N(2),N(2)-dimethylguanosine tRNA methyltransferase
           Trm-G10; AltName: Full=tRNA:G10 dimethyltransferase
 gi|2621813|gb|AAB85229.1| methyltransferase related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 336

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +   + + +   SG   G  +++   G G +      +G R V+  + D +     ++  
Sbjct: 171 MSPKLARCMVNLSGVKAGDRILDPFCGTGGILIEAGLMGVR-VVGADIDWRMVEGTRENL 229

Query: 91  SQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
             +     E+I+ DA                I+ + PY I  
Sbjct: 230 QHYGITDFEVIRSDA-----RDLRLDEKVDAIVTDPPYGISA 266


>gi|332361388|gb|EGJ39192.1| methyltransferase domain protein [Streptococcus sanguinis SK1056]
          Length = 195

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAES--------SGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+ +              G  V+++G G G L   L        
Sbjct: 24  LGQRLTFLTDAGVFSKKMIDYGSRVLLSVLDFEAGERVLDVGCGYGPLGLTLAKAQGVAA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +Q+   + +  + ++    EI+Q +  +      F+      II+N P   G ++
Sbjct: 84  TMVDINQRALDLAQKNAERNQISAEILQSNVYE-KVSGIFD-----HIISNPPIRAGKQV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK 156
           +   IS           LTL+ QK
Sbjct: 138 VHEVISGSYGHLTEGGDLTLVIQK 161


>gi|307330407|ref|ZP_07609551.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
 gi|306883924|gb|EFN14966.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
          Length = 369

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILK-DISSQHPNRLEII 100
                G  V+EIGAG G    +L    GA +V  ++ D +     +  +       + ++
Sbjct: 104 LDLRPGHRVLEIGAGTGYNAALLAERAGAGRVTTLDVDPEVADGARVALHRAGYGGVTVL 163

Query: 101 QDD 103
           + D
Sbjct: 164 EAD 166


>gi|304436318|ref|ZP_07396296.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370723|gb|EFM24370.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 469

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL---EI 99
           +      TVI+   G G +T  L    ARKV  IE       IL    +   N +   E 
Sbjct: 313 ADLHGTETVIDAYCGTGTITLFLAQR-ARKVYGIEI--VQPAILDARKNARDNHVKNAEF 369

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           I  DA KV    +     P  ++ + P    T  +    +
Sbjct: 370 IVGDATKVMPALYKQGIRPDVVVVDPPRAGCTPTVLQTFA 409


>gi|294085839|ref|YP_003552599.1| putative O-methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665414|gb|ADE40515.1| Predicted O-methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 253

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN---R 96
            ++       ++++G G G +   +        V  +E D      L + + +  N   +
Sbjct: 38  AAAVPQRTKRILDMGCGVGGVALCIAKRLPDVHVTAVEIDPDMLA-LAERNIKDNNLAAQ 96

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           + ++  D  K       N      +++N PY+
Sbjct: 97  IRLLTGDI-KALSPVLANSFD--HVVSNPPYH 125


>gi|228982478|ref|ZP_04142737.1| Methyltransferase [Bacillus thuringiensis Bt407]
 gi|228776661|gb|EEM24969.1| Methyltransferase [Bacillus thuringiensis Bt407]
          Length = 684

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           K+I      + G T++++G G G +  M+      + +  I+  Q     LK        
Sbjct: 416 KRII--LDYIKGDTIVDVGPGGGVMLDMIEEETEGKDIYGIDISQNVIDSLKQKKQNESR 473

Query: 96  RLEIIQDDALKV 107
             ++I+ DAL  
Sbjct: 474 SWDVIKGDALNF 485


>gi|315231489|ref|YP_004071925.1| RNA methylase [Thermococcus barophilus MP]
 gi|315184517|gb|ADT84702.1| RNA methylase [Thermococcus barophilus MP]
          Length = 208

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 9/155 (5%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--LEI 99
           S G ++G  + ++GAG G L+     LGA+KV  +E D+    I ++          +E+
Sbjct: 42  SLGDVEGKVIADLGAGTGVLSVGACLLGAKKVYAVEIDESALKIAEENVKALSVETCVEL 101

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I  D    D +    I +P     N   +     L                    +K   
Sbjct: 102 ILSDVSFFDKQADAVIMNPPFGSQNPKADR--PFLLKAFEISKVVYSIHLAKPEVRK-FI 158

Query: 160 ERITAQKNSPHYGRLSVLT----GWRTKATMMFDI 190
           E            RL+V       +      +  I
Sbjct: 159 EAFVRDNGFTITHRLTVDFEIPAQFFFHRKRLERI 193


>gi|195571037|ref|XP_002103510.1| GD20467 [Drosophila simulans]
 gi|194199437|gb|EDX13013.1| GD20467 [Drosophila simulans]
          Length = 341

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 28  NFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           N L D          I ++ G      V+++G G G L+      GA KVI +E      
Sbjct: 31  NMLRDSVRMEAFRDAIVQNRGLFQDKIVLDVGCGTGILSLFAAEAGASKVIAVEC-TDIA 89

Query: 84  PILKDIS--SQHPNRLEIIQD 102
            + ++I   +Q  + +++++ 
Sbjct: 90  DLAEEIIRDNQKEDVVKVVKG 110


>gi|67921842|ref|ZP_00515359.1| probable methyltransferase [Crocosphaera watsonii WH 8501]
 gi|67856434|gb|EAM51676.1| probable methyltransferase [Crocosphaera watsonii WH 8501]
          Length = 241

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
             +   ++E+G G G L+  LL      +++ ++   +   + K      +   R+  IQ
Sbjct: 42  PSNSSRILELGCGTGELSLKLLKHCPNAQIVAVDYSPRMIEMSKYKLGKTEFLERITFIQ 101

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
            D        + N      I  N    + +  + + I     
Sbjct: 102 GDF-----GAWANGELKEEIGTNFDACVSSLAIHHLIDEMKH 138


>gi|330815372|ref|YP_004359077.1| Methyltransferase [Burkholderia gladioli BSR3]
 gi|327367765|gb|AEA59121.1| Methyltransferase [Burkholderia gladioli BSR3]
          Length = 377

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEK 111
           IG G G L  +L   G  +VI  ++D +      +   +     ++E+++ D        
Sbjct: 204 IGTGTGVLAALLAQRGVARVIATDQDPRALACAAENLERLGRDRQVELLRAD-------- 255

Query: 112 FFNISSPIRIIANLPY 127
            F       ++ N P+
Sbjct: 256 LFPPGRAPLVVCNPPW 271


>gi|302672223|ref|YP_003832183.1| SAM-dependent methyltransferase/GNAT family acetyltransferase
           [Butyrivibrio proteoclasticus B316]
 gi|302396696|gb|ADL35601.1| SAM-dependent methyltransferase/acetyltransferase GNAT family
           [Butyrivibrio proteoclasticus B316]
          Length = 402

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           N + + A+         V+EIGAG G  +  L   G   V  +E  ++   +L++ S + 
Sbjct: 175 NYIHRFAD-----KNSKVLEIGAGTGRYSIALAKEG-MNVTAVELVEKNLEVLREHSKEL 228

Query: 94  PNRLEIIQDDA--LKVDFEKFFNI 115
           PN L  IQ DA  L+      F++
Sbjct: 229 PN-LHSIQGDATNLQFLASDTFDV 251


>gi|326202384|ref|ZP_08192253.1| glycosyl transferase group 1 [Clostridium papyrosolvens DSM 2782]
 gi|325987502|gb|EGD48329.1| glycosyl transferase group 1 [Clostridium papyrosolvens DSM 2782]
          Length = 962

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 27  QN--FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           QN  +LLD  I+ K+ ++  S     ++E+G G G  T +  +        I+  ++   
Sbjct: 355 QNRIYLLDA-IINKLIDNINSK---RILELGPGTGIFTGLFHSNKVTAYEAIDISEKSVA 410

Query: 85  ILKDISSQH 93
            L     ++
Sbjct: 411 ELSKTYPEY 419


>gi|325983058|ref|YP_004295460.1| Methyltransferase type 12 [Nitrosomonas sp. AL212]
 gi|325532577|gb|ADZ27298.1| Methyltransferase type 12 [Nitrosomonas sp. AL212]
          Length = 662

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            +   I     S     ++EIGAG G +T+ L   GA  V+ +E   +   I +  +   
Sbjct: 71  GVRANILRPFESELDGDILEIGAGCGAITRYLGECGAN-VLALEGSLRRAAIARSRTHDQ 129

Query: 94  PNRLEIIQDDALKVDFEKFFNI 115
            N + ++ +   +   E+ F++
Sbjct: 130 SN-VAVVAERFDQFRIERKFDV 150


>gi|242399072|ref|YP_002994496.1| Pcm; protein-L-isoaspartate O-methyltransferase [Thermococcus
           sibiricus MM 739]
 gi|259530965|sp|C6A3F2|PIMT_THESM RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|242265465|gb|ACS90147.1| Pcm; protein-L-isoaspartate O-methyltransferase [Thermococcus
           sibiricus MM 739]
          Length = 221

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-- 90
            +++  + E +    G+ V+E+GAG G    ++  L  R+V  IE+        +     
Sbjct: 66  PHMVAIMLELAELEGGMNVLEVGAGSGWNAALIYELVKREVYTIERVSDLVEFARKNLER 125

Query: 91  SQHPNRLEIIQDD 103
           + + +++ +I  D
Sbjct: 126 AGYKDKVHVIWGD 138


>gi|239907429|ref|YP_002954170.1| hypothetical protein DMR_27930 [Desulfovibrio magneticus RS-1]
 gi|239797295|dbj|BAH76284.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 560

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                   ++E+GAG G LT  L +L    V  +E       ++K       N L+++  
Sbjct: 69  LDFGPTGRILELGAGCGALTAHLTSL-PHAVTAVEGSPDRAAVIKARLPDAAN-LDVVTA 126

Query: 103 DALKVDFEKFFNI 115
           +A+ + +   F++
Sbjct: 127 NAVGLSYNGCFDV 139


>gi|92117332|ref|YP_577061.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrobacter hamburgensis X14]
 gi|91800226|gb|ABE62601.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrobacter hamburgensis X14]
          Length = 221

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           PK+Y     L+   ++ K+ +++       V+ +G   G  +  L    A +V   E D 
Sbjct: 61  PKRY-----LIKPMVVAKMMQAADIKSTDNVLVVGCATGY-SAALAAKLADRVTATESDP 114

Query: 81  QFFPILKDISSQHP-NRLEIIQDDALK 106
                   I +      + ++   A K
Sbjct: 115 ALAAKAAGILATLGLGHVTVVTAAASK 141


>gi|302539188|ref|ZP_07291530.1| protein-L-isoaspartate O-methyltransferase [Streptomyces sp. C]
 gi|302448083|gb|EFL19899.1| protein-L-isoaspartate O-methyltransferase [Streptomyces sp. C]
          Length = 369

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 5/72 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           ++  +A+S     G   +E+GAG G    L       G   V  +E D       +    
Sbjct: 95  VVADMADSLILEPGHRTLEVGAGMGWNAALLAH--RAGPGLVTSVEVDPGLAAAARQRIK 152

Query: 92  QHPNRLEIIQDD 103
                  +   D
Sbjct: 153 AAGLDAAVHPGD 164


>gi|254749394|dbj|BAH86593.1| farnesoic acid O-methyltransferase [Daphnia pulex]
 gi|321479232|gb|EFX90188.1| hypothetical protein DAPPUDRAFT_300180 [Daphnia pulex]
          Length = 270

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           +G  V++ G G G+LT+ L     R   +  I+  ++     ++   ++  RL   Q D 
Sbjct: 33  EGDAVLDFGCGDGDLTEYLARCIPRCASLTGIDISKKMIDHARNHHQENDLRLGFQQVDI 92

Query: 105 LK-VDFEKFFNIS 116
           +K +D  + F   
Sbjct: 93  MKSIDAREVFPDG 105


>gi|239627995|ref|ZP_04671026.1| FAD dependent oxidoreductase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518141|gb|EEQ58007.1| FAD dependent oxidoreductase [Clostridiales bacterium 1_7_47FAA]
          Length = 487

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 44  GSLDGITVIE---IGAGP-GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             L G   +E   IGAG  G LT  LL      VIV+E DQ      K+ +++  ++  I
Sbjct: 23  NPLPGDLTVEAAVIGAGMAGILTAYLLQKQGIDVIVLEADQVASGQTKNTTAKITSQHGI 82

Query: 100 IQDDALK 106
           I  D +K
Sbjct: 83  IYQDLIK 89


>gi|134100327|ref|YP_001105988.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133912950|emb|CAM03063.1| ribosomal RNA adenine dimethylase domain protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 198

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 6/101 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ 92
           +  ++           V+E+G G G  T  +     G  + + +E + ++   L      
Sbjct: 33  LADQMVAPVPGRGEPVVVELGPGTGAFTAAIQQRLGGRGRHLALELNARWAADLGRRFPD 92

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
               +E +  DA  +             +++ LP+   T +
Sbjct: 93  ----VETVCADARALPELMAERGLRADVVVSGLPWAAHTAV 129


>gi|116251745|ref|YP_767583.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256393|emb|CAK07475.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 377

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
           + +AE++G   G  V+EIG G G   +   +    KV  +   ++     ++    +   
Sbjct: 151 RALAEATGIGPGDHVLEIGCGWGGFAEFAASELNCKVTGLTISREQLAFAQERIHKAGLD 210

Query: 95  NRLEIIQDD 103
           +R+E    D
Sbjct: 211 DRVEFRFQD 219


>gi|172058353|ref|YP_001814813.1| methyltransferase type 12 [Exiguobacterium sibiricum 255-15]
 gi|229892083|sp|B1YKZ4|Y2346_EXIS2 RecName: Full=Uncharacterized methyltransferase Exig_2346
 gi|171990874|gb|ACB61796.1| Methyltransferase type 12 [Exiguobacterium sibiricum 255-15]
          Length = 212

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          I ++  +     V+E GAG GNLTQ LL    + V+ +E   +   IL D     P
Sbjct: 37 ILDTVATKAISPVVEFGAGTGNLTQRLLDR-HQDVLAVEPSPEMREILIDKIPTLP 91


>gi|311898077|dbj|BAJ30485.1| putative protein-L-isoaspartate O-methyltransferase [Kitasatospora
           setae KM-6054]
          Length = 380

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
            +I+ K+ E++    G+ V+EIGAG G  + ++  +    V  +E
Sbjct: 93  PSIVAKMLEAADLHPGMDVLEIGAGTGWNSALIAHITGGPVTAVE 137


>gi|268317361|ref|YP_003291080.1| modification methylase, HemK family [Rhodothermus marinus DSM 4252]
 gi|262334895|gb|ACY48692.1| modification methylase, HemK family [Rhodothermus marinus DSM 4252]
          Length = 304

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQH 93
           + +++ +   S  G  V+++G G G +   +        V   +   +   I +  + + 
Sbjct: 115 LTERVLQELQSTPGPRVLDVGTGSGCIALAIKHHRSDADVWACDISPEALSIARRNAERL 174

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPY 127
             ++  ++ D L   F +  N+  P   I++N PY
Sbjct: 175 GLQVHWVEADVLADSFPE--NVPGPFDLIVSNPPY 207


>gi|218532515|ref|YP_002423331.1| protein-L-isoaspartate O-methyltransferase [Methylobacterium
           chloromethanicum CM4]
 gi|218524818|gb|ACK85403.1| protein-L-isoaspartate O-methyltransferase [Methylobacterium
           chloromethanicum CM4]
          Length = 216

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             I+  + E+     G  V+E+GAG G    +L  +GA +V  IE+
Sbjct: 64  PYIVALMIEALALRPGDRVLEVGAGCGYAAAVLARMGA-QVFAIER 108


>gi|206890339|ref|YP_002248688.1| tRNA (Adenine-N(1)-)-methyltransferase
           (tRNA(m1A58)-methyltransferase) (tRNA(m1A58)MTase)
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742277|gb|ACI21334.1| tRNA (Adenine-N(1)-)-methyltransferase
           (tRNA(m1A58)-methyltransferase) (tRNA(m1A58)MTase)
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 261

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 10/120 (8%)

Query: 2   TMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL 61
           +M  K +  K  L  Y +  K+   Q  ++    + +I        G  V E G G G L
Sbjct: 54  SMGEKLYVFKPTLEEYILKMKRG-AQ--IIYPKDISRIITLLDIFPGAKVFEAGTGSGAL 110

Query: 62  TQMLLTL--GARKVIVIEKDQQFFPILKDISSQH-----PNRLEIIQDDALKVDFEKFFN 114
           T  LL     + K++  EK + F    K    +         L +   D  +   EK F+
Sbjct: 111 TLYLLRAVGESGKIVSYEKRKDFHETAKVNIEKFMKNKSYGELTLENKDISEGIDEKDFD 170


>gi|161344766|ref|NP_440907.2| precorrin-6B methylase [Synechocystis sp. PCC 6803]
          Length = 197

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NR 96
           I  +    +   + +IGAG G +   L  L  R +++ +E+D++   +++    +     
Sbjct: 32  IISALQLKEESIIWDIGAGTGTIPVELALLCPRSRIVAVERDEEVAGLIRRNCERFGVTN 91

Query: 97  LEIIQDDA 104
           + + +  A
Sbjct: 92  VTVHEGSA 99


>gi|270308580|ref|YP_003330638.1| SAM-dependent methyltransferase [Dehalococcoides sp. VS]
 gi|270154472|gb|ACZ62310.1| SAM-dependent methyltransferase [Dehalococcoides sp. VS]
          Length = 206

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
          Q F  D  I +   E++G        +IGAG G +T  LL    R V+ +++       +
Sbjct: 19 QGFFSD-RIREAAIEAAGVKPESIAADIGAGTGYMTAELLRKNCR-VVAVDQSSAMLAKI 76

Query: 87 KDISSQH 93
          K     +
Sbjct: 77 KSKFGAY 83


>gi|157150082|ref|YP_001450367.1| methyltransferase domain-containing protein [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157074876|gb|ABV09559.1| methyltransferase domain protein [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 197

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 59/168 (35%), Gaps = 28/168 (16%)

Query: 29  FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           FL D  +  KK+ +        +     G T++++G G G L   L+   A K  +++ +
Sbjct: 30  FLTDAGVFSKKMIDYGSQVLLSTIDFSKGDTILDLGCGYGPLGLTLVKSQAVKATLVDIN 89

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +   + +  +  +    EI Q +        F        II+N P   G +++   I+
Sbjct: 90  LRALDLARKNAELNKVSAEIFQSNVYDQVTGIF------DHIISNPPIRAGKQVVHQVIT 143

Query: 140 AD-TWPPFWESLTLLFQK------------EVGERITAQKNSPHYGRL 174
                      LT++ QK            EV       K    Y  L
Sbjct: 144 GSFEHLTLGGDLTIVIQKKQGAPSAKAKMEEVFGNCEVVKKDKGYYIL 191


>gi|75908443|ref|YP_322739.1| hypothetical protein Ava_2226 [Anabaena variabilis ATCC 29413]
 gi|75702168|gb|ABA21844.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 251

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 19/144 (13%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLT---QMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           K+  +        V +IGAG G ++     LLT G  KV  ++   +   IL+    +  
Sbjct: 83  KLINALNLKPDDVVADIGAGTGYISLQIAPLLTTG--KVFAVDIQPEMLEILEFFKQEKN 140

Query: 95  -NRLEIIQDDA-----------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              +E I   A           L +  + +     P  ++  +   +        +    
Sbjct: 141 IANIEPILATANNPNLPPASVDLALMVDAYHEFEYPQEVMQGIVQALKPGGKVVLVEYRG 200

Query: 143 WPPF--WESLTLLFQKEVGERITA 164
             PF   + L  + QK+V + + A
Sbjct: 201 ENPFIMIKRLHKMTQKQVRQEMAA 224


>gi|328785368|ref|XP_003250590.1| PREDICTED: hypothetical protein LOC100578201 [Apis mellifera]
          Length = 1399

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 8/146 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N+   + +        TV+EIG G G L  +++    ++VI ++   +           
Sbjct: 413 ENVANAVIDLLAPSPKTTVLEIGCGIG-LIGLMMASKCQQVIGVDSPSEVEEAEMTCELN 471

Query: 93  HPNRLEIIQDDALKVDFEKFFNIS-SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
           +      I     +V  +    +       I N   NIG  +    ++A    P  + + 
Sbjct: 472 NIKNASFIMGSPSEVTNQIIAAVKNRKTCAIINANTNIGRAI--EVMTALRKIPSLKRIV 529

Query: 152 LLF----QKEVGERITAQKNSPHYGR 173
           ++     Q        A+     +G 
Sbjct: 530 MITTLTKQSVRAILELARPGDHGHGS 555


>gi|328951854|ref|YP_004369188.1| Methyltransferase type 11 [Desulfobacca acetoxidans DSM 11109]
 gi|328452178|gb|AEB08007.1| Methyltransferase type 11 [Desulfobacca acetoxidans DSM 11109]
          Length = 296

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQD 102
           +V+EIGAG G  T  L     R V VI+       +L+ ++  ++ + +EII+ 
Sbjct: 71  SVLEIGAGTGVFTIPLAKRVPR-VTVIDPSPGMLGVLRHNLKLENLSNVEIIEG 123


>gi|302346617|ref|YP_003814915.1| ribosomal protein L11 methyltransferase [Prevotella melaninogenica
           ATCC 25845]
 gi|302150599|gb|ADK96860.1| ribosomal protein L11 methyltransferase [Prevotella melaninogenica
           ATCC 25845]
          Length = 289

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 9/144 (6%)

Query: 35  ILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + I        L    V++ G G G L  +    GA++V+  + D+         +++
Sbjct: 138 TTQMIVSLLLNQDLKEKRVLDCGCGTGILGIVAAKCGAKEVVSYDIDEWSV-----RNAE 192

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII-ANLPYNIGTRLLFNWISADTWPPFWESLT 151
           H   L  ++ D L+ D     ++S    +I AN+  NI    + +++S  T         
Sbjct: 193 HNAELNGVELDVLEGDRRVLSHVSGVFDVILANINRNIILEDIDDFVSVMTTESKIILSG 252

Query: 152 LLFQK-EVGERITAQKNSPHYGRL 174
              Q  E   +   +       RL
Sbjct: 253 FYEQDAEAILQKANELGLKENQRL 276


>gi|258514575|ref|YP_003190797.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Desulfotomaculum acetoxidans DSM 771]
 gi|257778280|gb|ACV62174.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 202

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 40  AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFP----ILKDISSQHP 94
              +   +G TV +IGAG G+L+ +  L +   KV  +E   +       I ++  +   
Sbjct: 34  VAKARLREGQTVWDIGAGTGSLSVEAALQVVRGKVYAVE---RLAQGIDLIRQNRDNFSL 90

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRII 122
           + LEIIQ     +  E  +++  P R+ 
Sbjct: 91  DNLEIIQG----LAPEALYDLPDPDRVF 114


>gi|150390796|ref|YP_001320845.1| ribosomal protein L11 methyltransferase [Alkaliphilus
           metalliredigens QYMF]
 gi|166989892|sp|A6TSL8|PRMA_ALKMQ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|149950658|gb|ABR49186.1| ribosomal protein L11 methyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 317

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           L+KI  +       TV +IG G G L+ +   LGA KVI ++ D     + ++    +  
Sbjct: 169 LEKIVGA-----KYTVFDIGCGSGILSIVAAKLGAEKVIAVDLDGTAIRVTQENVDANDV 223

Query: 95  -NRLEIIQDDALKV 107
            + +E+   + + V
Sbjct: 224 SDIVEVRHGNLMDV 237


>gi|257784662|ref|YP_003179879.1| methyltransferase [Atopobium parvulum DSM 20469]
 gi|257473169|gb|ACV51288.1| methyltransferase [Atopobium parvulum DSM 20469]
          Length = 192

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 33  LNILKKIAESSGSL-DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             I   I  S G       V++  AG G +   LL+ GA     ++KD++    +K  + 
Sbjct: 31  EAIASSILASRGLDISESRVLDAFAGSGAMGFELLSRGALYATFVDKDRKTCDRIKRTAK 90

Query: 92  QH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 + + +I  D  ++        +    +I + PY +   ++   + 
Sbjct: 91  SLGVANSEMSVICGDTARLAESSQLFGAPFDVVILDPPYAVEVEVVSKLLK 141


>gi|323702402|ref|ZP_08114067.1| ribosomal protein L11 methyltransferase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532708|gb|EGB22582.1| ribosomal protein L11 methyltransferase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 308

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
              G T +++G G G L      LGA KVI ++ D+    + ++   ++    ++E++Q 
Sbjct: 168 IKGGETAVDVGTGTGILAITAAKLGAAKVIAVDLDEVAVQVARENVQRNQVQGQVEVLQG 227

Query: 103 DALK 106
           + L 
Sbjct: 228 NLLD 231


>gi|297180994|gb|ADI17196.1| FOG: tpr repeat-protein [uncultured Rhodobacterales bacterium
           HF0070_10D05]
          Length = 734

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEII 100
               D   V+EIG G G L  M    GA++VI  E  +       +I S+  + N+++++
Sbjct: 471 LAIADNDLVLEIGTGSGLLAMMSFNAGAKEVITCEASKILAATANEIISENGYENKIKVL 530

Query: 101 Q 101
            
Sbjct: 531 H 531


>gi|260428345|ref|ZP_05782324.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45]
 gi|260422837|gb|EEX16088.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45]
          Length = 330

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           G G  ++ LL  GA +VI I++D     +  +    +  RLE+++ +   +D 
Sbjct: 38  GAGGYSRGLLEAGADRVIGIDRDPLAHRMAAEWIGSYGGRLELVEGNFADMDQ 90


>gi|195128733|ref|XP_002008816.1| GI11605 [Drosophila mojavensis]
 gi|193920425|gb|EDW19292.1| GI11605 [Drosophila mojavensis]
          Length = 338

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 11/151 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL- 97
           I  ++      TV+E+G G G L+      GA KVI +E        +     +H NRL 
Sbjct: 48  IEANAELFRQATVLEVGCGSGCLSLWAAQQGAAKVIAVE--PSAVCQVARQLVRH-NRLE 104

Query: 98  ---EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF---NWIS-ADTWPPFWESL 150
              E+IQ +  ++       I S       +  +    +++    W+       P   +L
Sbjct: 105 HVIEVIQGNVQQLQLPPVDIIVSKWMGACLMYTSTLEAVIYARDKWLKPGGRIFPQLANL 164

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181
            +   ++  ++ +       Y  L +   WR
Sbjct: 165 YMAIAEQPEKQPSMSDYWTRYSGLDLHLAWR 195


>gi|329935607|ref|ZP_08285417.1| O-methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329304952|gb|EGG48822.1| O-methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 320

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           + G  DG  V+EIGAG G    +L    G   V  ++ D +     +           ++
Sbjct: 106 ALGVRDGDDVLEIGAGTGYNAALLAHRLGEEHVTTVDLDPEITESARRHLEAAGYHPAVV 165

Query: 101 QDD 103
             D
Sbjct: 166 TGD 168


>gi|319638935|ref|ZP_07993693.1| protein-L-isoaspartate O-methyltransferase [Neisseria mucosa C102]
 gi|317399839|gb|EFV80502.1| protein-L-isoaspartate O-methyltransferase [Neisseria mucosa C102]
          Length = 218

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++A+        TV+EIG G G  T  LL+  A KVI  + D       +  + +
Sbjct: 63  PKVVARLAQGLKLKKDETVLEIGTGSGYAT-ALLSKLAGKVITDDID----AEQQQRAKK 117

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             + L     D ++ +     +  +P   I
Sbjct: 118 VLDELGFANVDYVQNNGLTEASQGAPFDAI 147


>gi|317488411|ref|ZP_07946964.1| menaquinone biosynthesis methyltransferase ubiE [Eggerthella sp.
           1_3_56FAA]
 gi|325831962|ref|ZP_08165059.1| hypothetical protein HMPREF9404_4158 [Eggerthella sp. HGA1]
 gi|316912455|gb|EFV34011.1| menaquinone biosynthesis methyltransferase ubiE [Eggerthella sp.
           1_3_56FAA]
 gi|325486283|gb|EGC88735.1| hypothetical protein HMPREF9404_4158 [Eggerthella sp. HGA1]
          Length = 302

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +++  E +G  +G TV ++G G G L+  L   G  KV+  +  Q     L++   +   
Sbjct: 56  VERFLELAGIREGETVFDMGCGTGALSVPLGKRG-HKVVAADFSQGMLGQLQEALDREGV 114

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           R  +        D      +   +  +A    ++ T  L + +   T          L
Sbjct: 115 R-TVFPKQMSWADDWPSLGVRPGMVDVALASRSVATADLRDSLLRLTDVARRRVCVTL 171


>gi|254293768|ref|YP_003059791.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Hirschia
           baltica ATCC 49814]
 gi|254042299|gb|ACT59094.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Hirschia
           baltica ATCC 49814]
          Length = 215

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++        V+E+G G G     +L+L A++V  +E+ +       +    
Sbjct: 64  PVVVGQMLQALNVQPDHDVLEVGTGVGY-QAAILSLLAKRVYTVERFRTLHEKAAETLLS 122

Query: 93  HP-NRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRL 133
              + + +   D ++   E+  F+       I+  PY +  +L
Sbjct: 123 LELDNIRLFHGDGMEGLQERAPFDRIILTGAISRPPYTLAQQL 165


>gi|269956283|ref|YP_003326072.1| tRNA methyltransferase complex GCD14 subunit [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304964|gb|ACZ30514.1| tRNA methyltransferase complex GCD14 subunit [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 334

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPI----LKDISS 91
           +I + +    G  V+E G G G LT  LL        +  IE+  +F  +    ++    
Sbjct: 101 QIVQMADIYPGAVVVEAGVGSGALTMSLLRAVGDGGTLHSIERRDEFAAVAKGNVETFFG 160

Query: 92  QHPNRLEIIQDDA 104
                  +   D 
Sbjct: 161 GEHPAWHLHSGDF 173


>gi|257058000|ref|YP_003135888.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256588166|gb|ACU99052.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 423

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           +VIE+ AG G +   L   G +  +++E D+     L+      P    IIQ+D  K+DF
Sbjct: 74  SVIELFAGCGGMALGLENAGLKTELLVEIDRDCVNTLQKNRPYWP----IIQEDVTKIDF 129

Query: 110 EKF 112
             +
Sbjct: 130 RSY 132


>gi|254415766|ref|ZP_05029524.1| Methyltransferase domain family [Microcoleus chthonoplastes PCC
          7420]
 gi|196177472|gb|EDX72478.1| Methyltransferase domain family [Microcoleus chthonoplastes PCC
          7420]
          Length = 235

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          G  V+E+GAG G+ TQ L     ++ I +E D      LK
Sbjct: 33 GSEVLEVGAGIGSTTQSLCQDNQKRWICLEPDPNLSQRLK 72


>gi|158520366|ref|YP_001528236.1| cyclopropane-fatty-acyl-phospholipid synthase [Desulfococcus
           oleovorans Hxd3]
 gi|158509192|gb|ABW66159.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfococcus
           oleovorans Hxd3]
          Length = 656

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 22/83 (26%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG------------NLTQMLLTLGARKVIVIEKDQ 80
           LN + +I E +G      V+EIG G G             LT   ++      +      
Sbjct: 423 LNKIARICEKAGIQATDHVLEIGTGWGGFAVEAVRQTGCALTTTTISQEQHDYVT----- 477

Query: 81  QFFPILKDISSQHPNRLEIIQDD 103
           +    L     +  +R+E++Q D
Sbjct: 478 RMVSRL-----EMEDRIEVLQQD 495


>gi|27382680|ref|NP_774209.1| O-methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27355852|dbj|BAC52834.1| bll7569 [Bradyrhizobium japonicum USDA 110]
          Length = 305

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
              +G TVI+IGAG G  T +L  L     +V   E DQ+   + ++      N  +I  
Sbjct: 106 AVKEGETVIQIGAGSGYYTAILAHLVGPGGRVHAYEIDQRLAGLARE------NLRDIAH 159

Query: 102 DDA 104
            D 
Sbjct: 160 ADV 162


>gi|119357051|ref|YP_911695.1| methyltransferase type 11 [Chlorobium phaeobacteroides DSM 266]
 gi|119354400|gb|ABL65271.1| Methyltransferase type 11 [Chlorobium phaeobacteroides DSM 266]
          Length = 219

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 15/166 (9%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P++      LL   I   I  +      +  +E G G G +T  +  L    +  ++  +
Sbjct: 23  PRRK-----LLAETIATAIIATVTPQPTMQALEFGCGTGLVTLAIAPL-VSSLTAVDTSE 76

Query: 81  QFFPILK-DISSQHPNRLEIIQDDALKVDFEKFFNISS-PIRIIANLPYNIGTRLLFNWI 138
           +   +L+  IS  +   +++I  D L       F+     +   +   ++I     F   
Sbjct: 77  EMLGVLRGKISENNIGTVQLICTD-LSSPHSDVFSEEQFNLIYSSMTLHHISEPGDFLRQ 135

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSP-----HYGRLSVLTG 179
                 P          KE         +          +LSV+  
Sbjct: 136 IIRYLAPGGTIAIADLDKE-DGYFHDDPDEKVHHGFERSQLSVMLQ 180


>gi|329113643|ref|ZP_08242420.1| Hypothetical protein APO_0416 [Acetobacter pomorum DM001]
 gi|326697027|gb|EGE48691.1| Hypothetical protein APO_0416 [Acetobacter pomorum DM001]
          Length = 261

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
             S  +  +  +EIG+G G  T  L     R V+  + +     + +     +   +EI 
Sbjct: 46  RLSEIVPDLPTLEIGSGTGWGTLALSRN--RPVLAFDNNPDLIRLAEARLQDYGANVEIF 103

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           Q D L     +  +     +    + + IG+
Sbjct: 104 QSD-LFEPSPQLLSAIQTFKPKVVVGWFIGS 133


>gi|227540245|ref|ZP_03970294.1| O-methyltransferase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239889|gb|EEI89904.1| O-methyltransferase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 192

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           + S      +E+G G G  T  LL     +  ++ ++ D  F  I K+  S  P RL ++
Sbjct: 41  AASKPHARFLELGTGTGLSTSWLLSGMDDSSTLLSVDHDPAFLTIAKEYLSSDP-RLTLV 99

Query: 101 QDDA---------LKVDFEKFFNISSPIRIIANLPYNI---GTRLLFNWISADTWP 144
           Q DA         LK DF            +      +   G   + + +    WP
Sbjct: 100 QQDAGEWLLENKELKFDFIFADTWHGKFLELETCLDMLDRGGIYFIDDLLPQPNWP 155


>gi|242015179|ref|XP_002428251.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212512812|gb|EEB15513.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 471

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
              I   IA          ++++G+G G+LT++L       V  IE + +     + + S
Sbjct: 115 SEKITYDIASKLNVK---LIVDVGSGLGHLTRVLAYGFQFTVFAIESNHELIQQARHLDS 171

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +     E+I    L  +       + PI +  ++ ++I +      + 
Sbjct: 172 E----FEMIAQKLLNDEELIELKRNRPIHVNKSIQFDISSSCFLQDLK 215


>gi|54025151|ref|YP_119393.1| hypothetical protein nfa31820 [Nocardia farcinica IFM 10152]
 gi|54016659|dbj|BAD58029.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 277

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL       +V+  E  +         ++  
Sbjct: 90  AAQIVHEGDVFPGARVLEAGAGSGALTCSLLRAVGPEGEVLSWEIREDHAEHAVRNVERF 149

Query: 90  SSQHPNRLEIIQDDALKVDFEKF 112
             + P    +   D  +   E  
Sbjct: 150 FGERPANWSLTVGDVAEYTGEPV 172


>gi|45358742|ref|NP_988299.1| methyltransferase [Methanococcus maripaludis S2]
 gi|45047608|emb|CAF30735.1| SAM (and some other nucleotide) binding motif:Generic
           methyltransferase [Methanococcus maripaludis S2]
          Length = 218

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDIS-SQ 92
           I + I    G   G   I+IG+GPG L+  L       +  ++  +    I LK+I+ + 
Sbjct: 31  IAENIINRFGITAG-NCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADAD 89

Query: 93  HPNRLEIIQDDA 104
             +R++I+Q D 
Sbjct: 90  LNDRIQIVQGDV 101


>gi|108803138|ref|YP_643075.1| type 11 methyltransferase [Rubrobacter xylanophilus DSM 9941]
 gi|108764381|gb|ABG03263.1| Methyltransferase type 11 [Rubrobacter xylanophilus DSM 9941]
          Length = 195

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKD 88
                ++ + + +      TV+E G G G  T  +L    RK  V+  E D +    +  
Sbjct: 30  TSRRAVRGLLDMADLGGARTVLEFGVGTGVYTAEILRRVGRKARVLGFEVDARLCRAV-- 87

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            +     RLE++ D A   +  ++    +   I+++LP+ 
Sbjct: 88  CARLDDPRLELVNDSA--ENAGRYLGGEAADVIVSSLPFT 125


>gi|332976547|gb|EGK13388.1| type 12 methyltransferase [Desmospora sp. 8437]
          Length = 249

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 19/157 (12%)

Query: 33  LNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDI 89
             + +   +   +       ++E+G G G L++++L    R +VI ++         +  
Sbjct: 29  ERLARAFIDLIPADQDEAFRLVELGVGGGWLSEVILDHFPRAEVIALDGSPSMIEATRGR 88

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
            ++  +RL   + D L   +    +                + L  + +        +  
Sbjct: 89  LARFSDRLRFQRFDLLDEHWPDSLDEVRCFV----------SSLAIHHLDGKGKARLFRK 138

Query: 150 LTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKAT 185
           L    Q      I    K +   GR      +  +A 
Sbjct: 139 LYGCLQPGGALLIADIMKEAGDRGR-----QYMARAW 170


>gi|320169131|gb|EFW46030.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1137

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 26/151 (17%)

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-FNWI 138
            +  P +   + Q   R E +  D L+   ++         +  + P +I + +  F  +
Sbjct: 367 PELAPHMAYFALQRRARFEDVSTDTLRAAAKEL-------VMSNDFPTSISSYVTHFRIL 419

Query: 139 SADTWPPFWESLTLLFQK-EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
            A         ++   Q+ EV E+   + N P Y               +  +   V   
Sbjct: 420 LAHEEHQMASDMSGFTQRDEVLEQF--RPNEPVY---------------ILQVPGLVERR 462

Query: 198 SPKVTSTVIHFIPHLNPIPCCLESLKKITQE 228
            P V   V+HF P   P       +  + ++
Sbjct: 463 PPLVYGDVVHFRPDHIPFAVWEARVLNVDRQ 493


>gi|294496018|ref|YP_003542511.1| RNA cap guanine-N2 methyltransferase [Methanohalophilus mahii DSM
           5219]
 gi|292667017|gb|ADE36866.1| RNA cap guanine-N2 methyltransferase [Methanohalophilus mahii DSM
           5219]
          Length = 350

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 39  IAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-N 95
           I     +  L    + +I  G G  T        +KV  IE D       K     +  N
Sbjct: 25  IVAEYRARRLKCDVLADISCGIGGQTIFFAKEC-KKVYAIEIDPVKIEHAKRNCQLYGVN 83

Query: 96  RLEIIQDDALK 106
            +E I  DAL 
Sbjct: 84  NVEFICGDALD 94


>gi|288802228|ref|ZP_06407668.1| ribosomal protein L11 methyltransferase [Prevotella melaninogenica
           D18]
 gi|288335195|gb|EFC73630.1| ribosomal protein L11 methyltransferase [Prevotella melaninogenica
           D18]
          Length = 289

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 9/144 (6%)

Query: 35  ILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + I        L    V++ G G G L  +    GA++V+  + D+         +++
Sbjct: 138 TTQMIVSLLLNQDLKEKRVLDCGCGTGILGIVAAKCGAKEVVSYDIDEWSV-----RNAE 192

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII-ANLPYNIGTRLLFNWISADTWPPFWESLT 151
           H   L  ++ D L+ D     ++S    +I AN+  NI    +  ++S  T         
Sbjct: 193 HNAELNGVELDVLEGDRRVLSHVSGVFDVILANINRNIILEDIDEFVSVMTTESKIILSG 252

Query: 152 LLFQK-EVGERITAQKNSPHYGRL 174
              Q  E   +   +       RL
Sbjct: 253 FYEQDAEAILQKANELGLKESQRL 276


>gi|255539070|ref|XP_002510600.1| s-adenosyl-l-methionine:delta24-sterol-C-methyltransferase,
           putative [Ricinus communis]
 gi|223551301|gb|EEF52787.1| s-adenosyl-l-methionine:delta24-sterol-C-methyltransferase,
           putative [Ricinus communis]
          Length = 361

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRL 97
            +      G  ++++G G G   + +       V+ I  ++       L +  +   +  
Sbjct: 116 VDLIDVKPGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 175

Query: 98  EIIQDDALKVDFEK-FFNISSPIRIIANLP 126
           E++  + L++ F    F+ +  I    + P
Sbjct: 176 EVVCGNFLEMPFPDNSFDGAYSIEATCHAP 205


>gi|209883716|ref|YP_002287573.1| methyltransferase type 12 [Oligotropha carboxidovorans OM5]
 gi|209871912|gb|ACI91708.1| methyltransferase type 12 [Oligotropha carboxidovorans OM5]
          Length = 280

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--- 96
            E+       TV +IGAGPG +T       A  V  I+  ++    LK   +    R   
Sbjct: 48  IEAMKIGPEDTVADIGAGPGRITLQ-AAQRAGSVTAIDVSREMLDHLKANVAARGLRNVH 106

Query: 97  -LEIIQDDALKVDFEKFFNI 115
            L +   D +  +     +I
Sbjct: 107 PLHLSWHDVVPGENVPLHDI 126


>gi|322373099|ref|ZP_08047635.1| methyltransferase domain protein [Streptococcus sp. C150]
 gi|321278141|gb|EFX55210.1| methyltransferase domain protein [Streptococcus sp. C150]
          Length = 196

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            S    DG T++++G G G L   L  +   KV +I+ + +   + K  + ++   ++I 
Sbjct: 51  NSLDLEDGKTLLDVGCGYGPLGISLAKVQGVKVTMIDINSRAIDLAKQNAERNKVDVDIF 110

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQK 156
           Q +  +     F        II+N P   G +++   I           +LT++ QK
Sbjct: 111 QSNIYENVTGNF------DYIISNPPIRAGKKVVHQVIEEAYDHLNQGGTLTIVIQK 161


>gi|322391548|ref|ZP_08065017.1| adenine-specific methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321145631|gb|EFX41023.1| adenine-specific methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 317

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNR 96
           I E     + ++++E+G+G G L    LT   +KV  + IE D     +   ++     +
Sbjct: 101 IIEQLFPAENLSILELGSGMGILGASFLTSMNKKVNYLGIELDDLLIDLAASMAEVMDLQ 160

Query: 97  LEIIQDDALK 106
           +  +Q DA++
Sbjct: 161 MGFVQGDAVR 170


>gi|239940080|ref|ZP_04692017.1| putative cyclopropane fatty acid synthase [Streptomyces roseosporus
           NRRL 15998]
 gi|239986568|ref|ZP_04707232.1| putative cyclopropane fatty acid synthase [Streptomyces roseosporus
           NRRL 11379]
 gi|291443508|ref|ZP_06582898.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346455|gb|EFE73359.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           roseosporus NRRL 15998]
          Length = 450

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQH 93
           L+ I    G   G  +++IG G G+LT          V  +    +    ++    +   
Sbjct: 197 LELICRKLGLRPGARLLDIGCGWGSLTLYAAENHGVHVTAVTLAAEQAAHVRQQVTARGL 256

Query: 94  PNRLEIIQDD 103
            + +E++  D
Sbjct: 257 DDLVEVLNID 266


>gi|228914115|ref|ZP_04077735.1| Methyltransferase, UbiE/COQ5 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845568|gb|EEM90599.1| Methyltransferase, UbiE/COQ5 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 233

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           + +S  S+    +++IG G G  T+ L  +GA+ V+ I+  ++     K+  S   N + 
Sbjct: 1   MIKSITSIQNKRIVDIGCGGGIYTKELALMGAKSVVGIDFSKEILQAAKENCSGFSN-IS 59

Query: 99  IIQDDA 104
            I  DA
Sbjct: 60  FIHGDA 65


>gi|326445660|ref|ZP_08220394.1| ubiquinone/menaquinone biosynthesis methylase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 175

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             ++GS     V E+G GPG +T  L  LG   V  ++       + ++       R E+
Sbjct: 9   VRAAGSG---LVAELGCGPGPVTAHLRDLG-LDVFGVDLSPVLIGLARETYPDL--RFEV 62

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
              DAL +   +   I S   +I   P ++
Sbjct: 63  GSMDALDLADGQLQGIVSWYSVIHASPQDV 92


>gi|254390485|ref|ZP_05005701.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197704188|gb|EDY50000.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score = 39.4 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             ++GS     V E+G GPG +T  L  LG   V  ++       + ++       R E+
Sbjct: 60  VRAAGSG---LVAELGCGPGPVTAHLRDLG-LDVFGVDLSPVLIGLARETYPDL--RFEV 113

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
              DAL +   +   I S   +I   P ++
Sbjct: 114 GSMDALDLADGQLQGIVSWYSVIHASPQDV 143


>gi|307354695|ref|YP_003895746.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307157928|gb|ADN37308.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 288

 Score = 39.4 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 2   TMNNK-SHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD-GITVIEIGAGPG 59
            M +      +  +  +++ P K  G+      N++ ++ E  G    G  V++IG GPG
Sbjct: 26  NMGDPEVWEKRAEMFAHRLKPGKRQGR-----TNMVLELLEEVGFKPEGARVLDIGCGPG 80

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQDDALKVDFEKFFN 114
            L   L   GA  V  I+   +    LKD + +     HP +      D  ++ F   F+
Sbjct: 81  ALAIPLARAGAD-VTAIDISSKTLEYLKDNAEKEGLSVHPVKCHWWTADIDELGFRDQFD 139

Query: 115 I 115
           +
Sbjct: 140 L 140


>gi|227873960|ref|ZP_03992176.1| possible S-adenosylmethionine(SAM)-dependent methyltransferase
           [Oribacterium sinus F0268]
 gi|227840168|gb|EEJ50582.1| possible S-adenosylmethionine(SAM)-dependent methyltransferase
           [Oribacterium sinus F0268]
          Length = 205

 Score = 39.4 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            NIL  I +         V++IG G G LT  L   G   +   +   +   +  +    
Sbjct: 33  KNILGDIYKIIMEKPDAVVLDIGFGTGTLTTKLYKNGC-TIYGQDFSSRMIELAYEKMPG 91

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRI 121
                 + Q D  K   ++    S    I
Sbjct: 92  A----HLYQGDFSKGLADELKQESFDFII 116


>gi|254411376|ref|ZP_05025153.1| Methyltransferase domain family [Microcoleus chthonoplastes PCC
           7420]
 gi|196181877|gb|EDX76864.1| Methyltransferase domain family [Microcoleus chthonoplastes PCC
           7420]
          Length = 286

 Score = 39.4 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++ +  E +      +++EIG GPG  T     LG   ++ +E       + K   S +P
Sbjct: 48  LIHRAVELAQLPAQASILEIGCGPGIATVEFAELG-FSMVCLEPSPAACQLAKSNCSAYP 106

Query: 95  NRLEIIQ 101
           N +EII 
Sbjct: 107 N-VEIIN 112


>gi|20092161|ref|NP_618236.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
 gi|19917387|gb|AAM06716.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
          Length = 274

 Score = 39.4 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEI 99
            + G  +  T ++IGAG G++T  L  +  ++V  +E  +    IL  ++     + ++I
Sbjct: 52  RTIGMQNDWTALDIGAGAGSMTVPLAKIC-KRVTAVEPSKTMARILSSNLKKAGLDNVQI 110

Query: 100 IQ 101
           I 
Sbjct: 111 IN 112


>gi|239982242|ref|ZP_04704766.1| methyltransferase [Streptomyces albus J1074]
 gi|291454089|ref|ZP_06593479.1| methyltransferase [Streptomyces albus J1074]
 gi|291357038|gb|EFE83940.1| methyltransferase [Streptomyces albus J1074]
          Length = 270

 Score = 39.4 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNR 96
            + E+        V+++  G G++T  LL    + +   ++ D     I +   +   +R
Sbjct: 54  DMVEAVA-GSEPRVLDLACGTGSITDRLLKRFPKAQSTGVDLDPALLTIAEGTFAG-DDR 111

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +  +  D    D+       S   ++        T    +W+ ++     +  +  + 
Sbjct: 112 VTFVTADLKDPDWPALLPHDSYDAVL--------TATALHWLHSEPLAALYGQIAGIV 161


>gi|261364893|ref|ZP_05977776.1| putative protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Neisseria mucosa ATCC 25996]
 gi|288566942|gb|EFC88502.1| putative protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Neisseria mucosa ATCC 25996]
          Length = 218

 Score = 39.4 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
             ++ ++A+        TV+EIG G G  T  LL   A KV+  + D +
Sbjct: 63  PKVVARLAQGLKLTKTDTVLEIGTGSGYAT-ALLAKLAGKVVSDDLDAE 110


>gi|261418480|ref|YP_003252162.1| ribosomal protein L11 methyltransferase [Geobacillus sp. Y412MC61]
 gi|319767559|ref|YP_004133060.1| ribosomal protein L11 methyltransferase [Geobacillus sp. Y412MC52]
 gi|261374937|gb|ACX77680.1| ribosomal protein L11 methyltransferase [Geobacillus sp. Y412MC61]
 gi|317112425|gb|ADU94917.1| ribosomal protein L11 methyltransferase [Geobacillus sp. Y412MC52]
          Length = 312

 Score = 39.4 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQD 102
              G  VI++G G G L+ +   LGAR V  ++ D        L    ++  + + + Q+
Sbjct: 173 VRPGDHVIDVGTGSGILSIVAAMLGARSVRALDLDPVAVDSARLNVKLNKVQHIVTVSQN 232

Query: 103 DALKVDFEK 111
           + L    E 
Sbjct: 233 NLLDHIEEP 241


>gi|111222119|ref|YP_712913.1| protein-L-isoaspartate O-methyltransferase 2 [Frankia alni ACN14a]
 gi|111149651|emb|CAJ61344.1| Protein-L-isoaspartate O-methyltransferase 2
           (Protein-beta-aspartate methyltransferase 2) (PIMT 2)
           (Protein L-isoaspartyl methyltransferase 2)
           (L-isoaspartyl protein carboxyl methyltransferase 2)
           (partial match) [Frankia alni ACN14a]
          Length = 416

 Score = 39.4 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             I+  + E      G  V+E+GAG G    L   ++      +  ++ D+      +  
Sbjct: 79  PRIVAMMLEQLHLESGHRVLEVGAGTGYNAALMAAIVGTSGH-ITAVDIDEDLVESARTH 137

Query: 90  SSQHP-NRLEIIQDD 103
            +      ++++  D
Sbjct: 138 LAAAGVTNVDVVLGD 152


>gi|46573|emb|CAA38227.1| ermC [Staphylococcus aureus RN4220]
          Length = 40

 Score = 39.4 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           QNF+   + + KI  +    +   + EIG+G
Sbjct: 9  SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSG 40


>gi|325922749|ref|ZP_08184484.1| methyltransferase, cyclopropane fatty acid synthase [Xanthomonas
           gardneri ATCC 19865]
 gi|325546775|gb|EGD17894.1| methyltransferase, cyclopropane fatty acid synthase [Xanthomonas
           gardneri ATCC 19865]
          Length = 356

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +     GA    V     Q   IL+    +  + +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERYPGATITAVSNSRPQRAHILEQCRVRGLSNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQK 156
             D  AL +    F  + S         Y      + +W++     +   +    L +  
Sbjct: 186 TADVNALALPPGNFDRVVSVEMFEHMRNYRELLARVGSWLAPGGKLFVHVFCHRDLAYPF 245

Query: 157 EVG 159
           EV 
Sbjct: 246 EVA 248


>gi|325528948|gb|EGD05974.1| cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia sp.
           TJI49]
          Length = 405

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 30  LLDLNILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           L D    K  +I +S G   G+ V+EIG G G         G R V  +   Q  + + +
Sbjct: 170 LADAQTAKYQRIVDSLGLRAGMHVLEIGCGWGGFAAHAARQGIR-VHGVTVSQAQYALAR 228

Query: 88  DISSQ--HPNRLEIIQDDALKVD 108
           +  ++    +R+ +   D   VD
Sbjct: 229 ERMARDGLSDRVTLELRDYRDVD 251


>gi|291191825|gb|ADD82953.1| BatL [Pseudomonas fluorescens]
          Length = 721

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 2/115 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLE 98
            +  S     V++IGAG G L+ M     A +V+  E +        ++   ++    + 
Sbjct: 385 RAIASRPPELVLDIGAGCGLLSMMAAGARAAQVVGCEVNPDICSAGHEVIGLNRLGENIT 444

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           +I  D   +   +     + + +      ++    + ++++        E+   L
Sbjct: 445 LINKDCRDLKIPEDLARRADLAVFELFDCSLIGEGVLHFLAHAREHLLTENACYL 499


>gi|171915324|ref|ZP_02930794.1| hypothetical protein VspiD_29155 [Verrucomicrobium spinosum DSM
           4136]
          Length = 265

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +  + A       G  V+++G GPG    +  +      I +E+      I + +     
Sbjct: 60  VAHEAARFLADRPGDRVLDVGCGPGKFCAVGASATQGHFIGVEQRGNLVRIAQSLLQHFQ 119

Query: 95  -NRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLFN 136
             R  I+Q + +  DF +F  F + +P +  +   Y I + +  +
Sbjct: 120 IPRATIVQGNIVDFDFGQFDAFYLFNPFQENSLPSYGIDSSVTLD 164


>gi|224085956|ref|XP_002307753.1| predicted protein [Populus trichocarpa]
 gi|118482368|gb|ABK93107.1| unknown [Populus trichocarpa]
 gi|222857202|gb|EEE94749.1| predicted protein [Populus trichocarpa]
          Length = 364

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-D-QQFFPILKDISSQHPNRL 97
            +      G  ++++G G G   + +      KV+ I   D Q       +  +   +  
Sbjct: 116 VDLINVKPGDRILDVGCGVGGPMRAIAAHSRAKVVGITINDYQVSRARTHNKKAGLDSLC 175

Query: 98  EIIQDDALKVDFEK-FFNISSPIRIIANLP 126
           E++Q + L++ F +  F+ +  I    + P
Sbjct: 176 EVVQGNFLEMPFPENSFDGAYSIEATCHAP 205


>gi|114704930|ref|ZP_01437838.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506]
 gi|114539715|gb|EAU42835.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506]
          Length = 339

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ E+     G T+++   G G  T+ +L  GA +VI I++D       + ++ +
Sbjct: 20  PVLLAEVIEALAPNAGETIVDGTFGAGGYTRAILGAGA-EVIAIDRDPTAIETARALAGE 78

Query: 93  HPNRLEIIQD 102
              RL  +  
Sbjct: 79  SNGRLTPVAG 88


>gi|28056267|gb|AAO28160.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 200

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L G  V+++ AG G L    ++ GA + +++E+  +   +L++  ++    +++EI+Q 
Sbjct: 47  VLPGAHVLDLFAGSGALGLEAVSRGAARAVLVERHAELVVLLREQVARLGAQDQVEIVQA 106

Query: 103 DALKV 107
           DAL+ 
Sbjct: 107 DALQW 111


>gi|88798100|ref|ZP_01113687.1| 16S RNA G1207 methylase RsmC [Reinekea sp. MED297]
 gi|88779297|gb|EAR10485.1| 16S RNA G1207 methylase RsmC [Reinekea sp. MED297]
          Length = 319

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 51  VIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
           ++E GAG G LT  L      R+V  +E D            ++   N+  I   D L+ 
Sbjct: 179 LLEFGAGSGILTSALAKQPSVRRVDAVEIDLLAVRSANRTVQENQLTNKAFIHWSDGLES 238

Query: 108 DFEKFFNISSPIRIIANLPYNIG 130
              + ++      +++N P++ G
Sbjct: 239 LPAQRYD-----ALVSNPPFHQG 256


>gi|125973835|ref|YP_001037745.1| 50S ribosomal protein L11P methyltransferase [Clostridium
           thermocellum ATCC 27405]
 gi|256004287|ref|ZP_05429269.1| ribosomal protein L11 methyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|281417995|ref|ZP_06249015.1| ribosomal protein L11 methyltransferase [Clostridium thermocellum
           JW20]
 gi|166223411|sp|A3DF23|PRMA_CLOTH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|125714060|gb|ABN52552.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Clostridium thermocellum ATCC 27405]
 gi|255991721|gb|EEU01821.1| ribosomal protein L11 methyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|281409397|gb|EFB39655.1| ribosomal protein L11 methyltransferase [Clostridium thermocellum
           JW20]
 gi|316939969|gb|ADU74003.1| ribosomal protein L11 methyltransferase [Clostridium thermocellum
           DSM 1313]
          Length = 313

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
             DG  VI++G G G L+ +   LGA +V  ++ D+    + K+    +  + + + +  
Sbjct: 172 VKDGCRVIDVGCGTGILSIIASKLGAAEVTAVDIDEVAVKVAKENLELNKVDNVRVFKG- 230

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            L  D EK         IIAN+  +I +R+
Sbjct: 231 VLD-DIEKEKRDIVVANIIANVIMDISSRV 259


>gi|330897703|gb|EGH29122.1| hypothetical protein PSYJA_09120 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 240

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           + +  +  + V+EIG G GN T+ L    A  V+ ++ ++           +     +I 
Sbjct: 29  QLAQEIPLVPVLEIGCGIGNGTKYLADGRA--VLALDNNEHLIARASAQLKEAGQSAQIH 86

Query: 101 QDDALKV---DFEKFFNISSPIRI 121
             D  ++   D++   +    I +
Sbjct: 87  HCDLFELSDEDYKAIADFQPKIVV 110


>gi|320547846|ref|ZP_08042130.1| adenine-specific methyltransferase [Streptococcus equinus ATCC
           9812]
 gi|320447606|gb|EFW88365.1| adenine-specific methyltransferase [Streptococcus equinus ATCC
           9812]
          Length = 318

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           ++EIG+G GNL Q LL   ++ +  + IE D     +   I+    ++ + +Q+DA++
Sbjct: 113 ILEIGSGTGNLAQTLLNNSSKDLNYLGIEVDDLLIDLSASIAEVMDSKAQFVQEDAVR 170


>gi|317124891|ref|YP_004099003.1| tRNA (adenine-58-N(1)-) methyltransferase [Intrasporangium calvum
           DSM 43043]
 gi|315588979|gb|ADU48276.1| tRNA (adenine-58-N(1)-) methyltransferase [Intrasporangium calvum
           DSM 43043]
          Length = 369

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILK 87
           +I + +    G TV+E G G G L+  LL       +V+  E+ + F  I +
Sbjct: 106 QIVQMADIFPGATVVEAGVGSGALSMSLLRAVGEHGRVLSFERREDFAEIAR 157


>gi|289167734|ref|YP_003446003.1| 16S RNA G1207 methylase RsmC [Streptococcus mitis B6]
 gi|288907301|emb|CBJ22137.1| 16S RNA G1207 methylase RsmC [Streptococcus mitis B6]
          Length = 196

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 16/138 (11%)

Query: 29  FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           FL D  +  KK+ +              G TV+++G G G L   L      +  +++ +
Sbjct: 30  FLTDAGVFSKKMVDFGSQLLLKCLDVNQGETVLDVGCGYGPLGLSLAKAYEVQSTMVDIN 89

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +   + +  + ++     I Q +  +     F        +I+N P   G +++   I 
Sbjct: 90  NRALDLARQNAERNKVEATIFQSNIYEQVKGTF------DHVISNPPIRAGKQVVHEIIE 143

Query: 140 -ADTWPPFWESLTLLFQK 156
            +  +      LT++ QK
Sbjct: 144 KSKDFLETSGDLTIVIQK 161


>gi|239832317|ref|ZP_04680646.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG
           3301]
 gi|239824584|gb|EEQ96152.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG
           3301]
          Length = 347

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ ++   + G  +++   G G  T+ +L  GA  VI I++D       + +  Q
Sbjct: 21  PVLIAEVIDALKPVAGAVIVDGTFGAGGYTRRILEAGAD-VIAIDRDPTAIEAGRVMEKQ 79

Query: 93  HPNRLEIIQDDALKVDFE 110
            P RL +++     +D  
Sbjct: 80  FPGRLNLVESRFSALDDA 97


>gi|315231283|ref|YP_004071719.1| tRNA (adenine57/58-N1)-methyltransferase [Thermococcus barophilus
           MP]
 gi|315184311|gb|ADT84496.1| tRNA (adenine57/58-N1)-methyltransferase [Thermococcus barophilus
           MP]
          Length = 253

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDIS--- 90
             +I   +G   G  ++E G G G LT  L  +     K++  E  + F   L   +   
Sbjct: 82  AAQIVAFAGISPGDFIVEAGVGSGALTLFLANIVGPNGKIVSYEVREDFA-RLAWKNIEW 140

Query: 91  SQHPNRLEI 99
           +   +R+ I
Sbjct: 141 AGFDDRVTI 149


>gi|166711653|ref|ZP_02242860.1| hypothetical protein Xoryp_09400 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 206

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           L G  V+++ AG G L    ++ GA    +IE+D      L+   ++     +++++Q+D
Sbjct: 55  LPGARVLDLFAGSGALGLEAVSRGAGHATLIERDSSLVQRLRAHVTRLDAATQVQVLQED 114

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           A++   E+     + I  +           +   + A      W
Sbjct: 115 AVR-WLERAPAALADIVFVDPPFAAGLWPAVLERLPAHVAADAW 157


>gi|225459762|ref|XP_002285903.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 360

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRL 97
            +      G  ++++G G G   + +       V+ I  ++       L +  +   +  
Sbjct: 116 VDLIDVKPGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNRKAGLDSLC 175

Query: 98  EIIQDDALKVDFEK-FFNISSPIRIIANLP 126
           E++  + L++ F    F+ +  I    + P
Sbjct: 176 EVVCGNFLQMPFADNSFDGAYSIEATCHAP 205


>gi|220929217|ref|YP_002506126.1| ribosomal protein L11 methyltransferase [Clostridium cellulolyticum
           H10]
 gi|254783296|sp|B8I303|PRMA_CLOCE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|219999545|gb|ACL76146.1| ribosomal protein L11 methyltransferase [Clostridium cellulolyticum
           H10]
          Length = 316

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            D   V++IG G G L+ +   LGA++V  I+ D+    + ++
Sbjct: 173 KDDTEVLDIGCGTGILSIIAAKLGAKQVEAIDIDEVAVKVARE 215


>gi|71066025|ref|YP_264752.1| ribosomal protein L11 methyltransferase [Psychrobacter arcticus
           273-4]
 gi|123648323|sp|Q4FRP0|PRMA_PSYA2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|71039010|gb|AAZ19318.1| LSU ribosomal protein L11P methyltransferase [Psychrobacter
           arcticus 273-4]
          Length = 308

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 47/147 (31%), Gaps = 18/147 (12%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            L    VI+ G G G L    L LGAR V  ++ D Q   +L    +   N ++      
Sbjct: 159 DLKDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQ--AVLATNQNAARNSVDNRLQAF 216

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLL-------------FNWISADTWPPFWESLT 151
           L  DF  F        +   +   +   L+                + A       E +T
Sbjct: 217 LPEDFTIFCQQQDIPAVEVMVANILAKPLIGLAPYFATLMASKSRIVLAGLIESQTEQVT 276

Query: 152 LLFQKEVG---ERITAQKNSPHYGRLS 175
             +Q       +     +   H+ RLS
Sbjct: 277 EAYQPYFALDPKHAFTAQEDQHWQRLS 303


>gi|254230504|ref|ZP_04923877.1| protein-L-isoaspartate O-methyltransferase [Vibrio sp. Ex25]
 gi|262393287|ref|YP_003285141.1| protein-L-isoaspartate O-methyltransferase [Vibrio sp. Ex25]
 gi|151936976|gb|EDN55861.1| protein-L-isoaspartate O-methyltransferase [Vibrio sp. Ex25]
 gi|262336881|gb|ACY50676.1| protein-L-isoaspartate O-methyltransferase [Vibrio sp. Ex25]
          Length = 208

 Score = 39.4 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E         V+EIG G G  T +L  +    V  +E+       L+  + +
Sbjct: 61  PYIVARMTELLELEPTSHVLEIGTGSGYQTAVLAQI-VDHVYSVER----IKSLQWEAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D  + +    P   I
Sbjct: 116 RLKQLDIYNVSTKHADGWQGWEARGPFDAI 145


>gi|315301846|ref|ZP_07872875.1| UbiE/COQ5 family methyltransferase [Listeria ivanovii FSL F6-596]
 gi|313629783|gb|EFR97887.1| UbiE/COQ5 family methyltransferase [Listeria ivanovii FSL F6-596]
          Length = 198

 Score = 39.4 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLE 98
            +        T++++GAG G LT     L    V  ++ D Q   +++  ++ ++   + 
Sbjct: 35  IQEVPVDKADTILDLGAGTGFLTIPAAKLVDNTVFALDLDPQMLALIQQKAANENLTNVN 94

Query: 99  IIQD 102
           +++ 
Sbjct: 95  VLEA 98


>gi|303247484|ref|ZP_07333756.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
 gi|302491180|gb|EFL51072.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
          Length = 216

 Score = 39.4 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 37  KKIAESSGSLDGIT------VIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +I   + +  G        ++E+G G G NL+++L    A +V  I+         +  
Sbjct: 34  DRIVRLAAAALGPRRAAPLRILEVGCGTGRNLSRLLTAFPAARVTGIDLCPSMLDRARRA 93

Query: 90  SSQHPNRLEIIQD 102
           ++ H  R+ ++  
Sbjct: 94  TAGHAARVRLLCA 106


>gi|226328649|ref|ZP_03804167.1| hypothetical protein PROPEN_02544 [Proteus penneri ATCC 35198]
 gi|225203382|gb|EEG85736.1| hypothetical protein PROPEN_02544 [Proteus penneri ATCC 35198]
          Length = 208

 Score = 39.4 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+          +V+EIG G G  T +L  L    V  +E+      IL+  + +
Sbjct: 61  PYIVAKMTALLELQSTDSVLEIGTGSGYQTAVLANL-VHHVSSVER----IKILQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWESL 150
               L++        D  + ++  +P    I+      +  +LL               +
Sbjct: 116 RFKHLDLHNISTRHGDGWEGWSSKAPFNAIIVTACATEVPQQLLMQLADGGRMI-----I 170

Query: 151 TLLFQKEVGERITAQKNSPHY 171
            +  Q+++ + I    N  HY
Sbjct: 171 PVGEQQQILKFIRRLGNDFHY 191


>gi|289583429|ref|YP_003481839.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099]
 gi|289532927|gb|ADD07277.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099]
          Length = 245

 Score = 39.4 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ 92
           I ++  +     DG  V+++G GPG N       +G+  +++ ++          D   Q
Sbjct: 49  IRERAIDRLDLQDGDHVLDVGCGPGVNFAYSRSQIGSEGQLVAVDYSPAMVENATDRVDQ 108

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT-RLLFNWIS 139
           +    +E+ Q DA  VDF++ F+       +  +P    T   ++  ++
Sbjct: 109 YGWENVEVRQADATTVDFDEQFDAVIATLSLGVMPDAHSTIENIYRLLA 157


>gi|239617391|ref|YP_002940713.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506222|gb|ACR79709.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 244

 Score = 39.4 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 17/171 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPI-LKDIS 90
            +++ ++ ++        V++IG G G  T +L   L   +VI IE +++   I L++  
Sbjct: 64  PSLVVQMIQNLNLTGNEKVLDIGTGTGYATLILAKILKDGEVISIEYNRELHEIALRNFE 123

Query: 91  SQHPNRLEIIQDDA-----LKVDFEKFFN----ISSPIRIIANLPYN---IGTRLLFNWI 138
                 +  I  D      LK  ++   +     + P++ I  L  +   I   ++FN  
Sbjct: 124 RYGVENITCISGDGFEGYSLKAPYDAIISMVACETLPVQWIEQLKSSGGRIVAPIVFNSF 183

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
               +    +   +   K +     + K    Y   + L        ++FD
Sbjct: 184 YTPVYKFTRKGEQIHAYKLIDAVFMSMKGQHEYR--TFLPQIF-DYELIFD 231


>gi|265763915|ref|ZP_06092483.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256523|gb|EEZ27869.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 237

 Score = 39.4 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
            +++IG G G +  ML    +  VI +E D +      +  ++ P  +R+E++  D    
Sbjct: 40  RILDIGTGTGLVALMLAQRCSASVIALEIDGKAAQQAAENITRSPWGSRIEVVCQDFRLY 99

Query: 108 DFEKFFNISSPIRIIANLPY 127
             +   N      I++N PY
Sbjct: 100 SNKN--NSLKYDTIVSNPPY 117


>gi|74316397|ref|YP_314137.1| hypothetical protein Tbd_0379 [Thiobacillus denitrificans ATCC
           25259]
 gi|74055892|gb|AAZ96332.1| Conserved hypothetical protein 95 [Thiobacillus denitrificans ATCC
           25259]
          Length = 190

 Score = 39.4 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           AG G L     + GA +V++IE+D      L+         ++I++ DAL  
Sbjct: 67  AGSGALGFEAASRGAARVLMIERDANAVAALEKNRGALGAAVDIVRADALAW 118


>gi|53713594|ref|YP_099586.1| putative RNA methyltransferase [Bacteroides fragilis YCH46]
 gi|81825000|sp|Q64TX7|TRMN6_BACFR RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|52216459|dbj|BAD49052.1| putative RNA methyltransferase [Bacteroides fragilis YCH46]
          Length = 237

 Score = 39.4 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
            +++IG G G +  ML    +  VI +E D +      +  ++ P  +R+E++  D    
Sbjct: 40  RILDIGTGTGLVALMLAQRCSASVIALEIDGKAAQQAAENITRSPWGSRIEVVCQDFRLY 99

Query: 108 DFEKFFNISSPIRIIANLPY 127
             +   N      I++N PY
Sbjct: 100 SNKN--NSLKYDTIVSNPPY 117


>gi|307294790|ref|ZP_07574632.1| Methyltransferase type 12 [Sphingobium chlorophenolicum L-1]
 gi|306879264|gb|EFN10482.1| Methyltransferase type 12 [Sphingobium chlorophenolicum L-1]
          Length = 214

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ 92
           ++  + E          +E G G G  T+ +L        ++ I+ +  F   L+  +  
Sbjct: 49  LVDSMLEGVDWQRTRLFVEYGPGVGTFTRPILDRLHPDATLLAIDLNLDFVAYLE--AEI 106

Query: 93  HPNRLEIIQDDA 104
              RL I+   A
Sbjct: 107 ADPRLRIVHGSA 118


>gi|241204351|ref|YP_002975447.1| Cyclopropane-fatty-acyl-phospholipid synthase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858241|gb|ACS55908.1| Cyclopropane-fatty-acyl-phospholipid synthase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 419

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
           + +AE++G   G  V+EIG G G   +   +    KV  +   ++     ++    +   
Sbjct: 193 RALAEATGIGPGDHVLEIGCGWGGFAEFAASELNCKVTGLTISREQLAFAEERIRKAGLD 252

Query: 95  NRLEIIQDD 103
           +R+E    D
Sbjct: 253 DRVEFRFQD 261


>gi|238064217|ref|ZP_04608926.1| hypothetical protein MCAG_05183 [Micromonospora sp. ATCC 39149]
 gi|237886028|gb|EEP74856.1| hypothetical protein MCAG_05183 [Micromonospora sp. ATCC 39149]
          Length = 275

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G   G+TV+E+G GPG L + L T      +  +E D           S+    + + Q 
Sbjct: 42  GLTAGLTVVELGCGPGYLLEKLATAFPGLNLHGLELDPLLVERASRYLSEQGLDVSVRQG 101

Query: 103 DALKVDFEK 111
             L   + +
Sbjct: 102 SILDTGYAE 110


>gi|86157207|ref|YP_463992.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773718|gb|ABC80555.1| Methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 382

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
           A +   L G    ++G G G L  +L   GAR VI  + + +     ++ +++     ++
Sbjct: 197 AAAERPLHGKRAFDVGTGTGVLALVLARAGAR-VIATDLEPRAVACARENAARLGLAGQV 255

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+++ D         F       I+ N P+
Sbjct: 256 EVVEAD--------LFPEGVADVIVCNPPW 277


>gi|86607154|ref|YP_475917.1| cyclopropane fatty acyl phospholipid synthase [Synechococcus sp.
           JA-3-3Ab]
 gi|86555696|gb|ABD00654.1| cyclopropane-fatty-acyl-phospholipid synthase [Synechococcus sp.
           JA-3-3Ab]
          Length = 379

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  IA       G+ V++IG G G   Q L      +V+ I   Q+   +  +     P 
Sbjct: 152 LDLIARKLDLQPGMRVLDIGCGWGGTAQYLAERYGVQVVGITVSQEQAKLASERCQGLP- 210

Query: 96  RLEIIQDD 103
            +EI  +D
Sbjct: 211 -VEIRLED 217


>gi|127512641|ref|YP_001093838.1| hypothetical protein Shew_1712 [Shewanella loihica PV-4]
 gi|126637936|gb|ABO23579.1| conserved hypothetical protein [Shewanella loihica PV-4]
          Length = 428

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 39/139 (28%), Gaps = 13/139 (9%)

Query: 42  SSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           ++        ++E  AG G+L ++L    +R V+ +E  Q         + Q       +
Sbjct: 139 AARVTPGDDEILEWCAGKGHLGRLLAKGQSRTVVSLEWQQGLCEAGSQFAHQWQLPQRFV 198

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
             DAL    ++          +          L  + +                      
Sbjct: 199 CGDALSESAQQLLKREQQAVALHAC-----GELHLSLLRGAAKARTRALAVAPC------ 247

Query: 161 RITAQKNSPHYGRLSVLTG 179
                 +  HY  LSVL  
Sbjct: 248 -CYHLISDSHYQPLSVLAQ 265


>gi|332360926|gb|EGJ38731.1| methyltransferase domain protein [Streptococcus sanguinis SK355]
          Length = 195

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAES--------SGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+ +              G  V+++G G G L   L        
Sbjct: 24  LGQRLTFLTDAGVFSKKMIDYGSRVLLSVLDFEAGERVLDVGCGYGPLGLSLAKAYGVAA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +Q+   + +  + ++     I Q +  +      F+      +I+N P   G ++
Sbjct: 84  TMVDINQRALDLAQKNAERNQISAHIFQSNVYE-KVSGIFD-----HVISNPPIRAGKQV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK 156
           L   IS           LTL+ QK
Sbjct: 138 LHEVISGSYEHLTEGGDLTLVIQK 161


>gi|307638161|gb|ADN80611.1| Predicted O-methyltransferase [Helicobacter pylori 908]
 gi|325996760|gb|ADZ52165.1| Predicted O-methyltransferase [Helicobacter pylori 2018]
 gi|325998355|gb|ADZ50563.1| hypothetical protein hp2017_1439 [Helicobacter pylori 2017]
          Length = 238

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             +G  +++IG+G G L  +         V ++EKD +     +  + + PN  ++ + D
Sbjct: 32  IKNGGAILDIGSGCGVLGLLCARDNPLASVHLVEKDSKMAFCSQKNALKFPNA-QVFESD 90

Query: 104 ALKVDFEKFFNISSPIRIIANLPYN 128
            L  +    ++      I+ N P+ 
Sbjct: 91  FLDFNPPILYD-----AIVCNPPFY 110


>gi|302339511|ref|YP_003804717.1| methyltransferase type 11 [Spirochaeta smaragdinae DSM 11293]
 gi|301636696|gb|ADK82123.1| Methyltransferase type 11 [Spirochaeta smaragdinae DSM 11293]
          Length = 219

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 28 NFLLDLNILK--KIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQFFP 84
          +F  D  IL+  +I +S G   G  V+EIG GPG L  + L      +++ +E       
Sbjct: 28 HF-RDRRILETEEIIKS-GIRTG-LVVEIGPGPGYLGLEWLKATSGTRLVGVEISPVMIE 84

Query: 85 ILKDISSQH 93
          + K   + +
Sbjct: 85 LAKKNCADY 93


>gi|302868572|ref|YP_003837209.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Micromonospora aurantiaca ATCC 27029]
 gi|302571431|gb|ADL47633.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Micromonospora aurantiaca ATCC 27029]
          Length = 693

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 41  ESSGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRL 97
           E      G  V+EIGA  G        +T     V  IE DQ      +  +     + +
Sbjct: 375 EQLDPQPGDHVLEIGAATGINAALLAEMTSPGGTVTTIELDQDLADGARAGLDRAGYHTV 434

Query: 98  EIIQDD 103
           E+I  D
Sbjct: 435 EVICGD 440


>gi|284028642|ref|YP_003378573.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Kribbella
           flavida DSM 17836]
 gi|283807935|gb|ADB29774.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Kribbella
           flavida DSM 17836]
          Length = 367

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++  + ++ G   G  V+EIG G G    +L    G+ +V  ++ D       ++  +
Sbjct: 92  PSLMASMLQALGLDGGERVLEIGTGTGYNAALLSERLGSEQVTSVDVDPGLVDQARERLA 151

Query: 92  QHPNRLEIIQDD 103
               R  +   D
Sbjct: 152 LAGYRPLVTVAD 163


>gi|160947757|ref|ZP_02094924.1| hypothetical protein PEPMIC_01692 [Parvimonas micra ATCC 33270]
 gi|158446891|gb|EDP23886.1| hypothetical protein PEPMIC_01692 [Parvimonas micra ATCC 33270]
          Length = 312

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD-QQFFPILKD-ISSQH 93
           ++KI      L   TV +IG+G G L+   L LGA+KV  ++ D       L++   ++ 
Sbjct: 167 IEKI-----DLKDKTVFDIGSGSGILSVGALKLGAKKVEAVDIDILGVEATLENAKLNKV 221

Query: 94  PNRLEIIQDD 103
            +R+ +   D
Sbjct: 222 EDRIVVHHGD 231


>gi|39933840|ref|NP_946116.1| methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|39647687|emb|CAE26207.1| possible methyltransferases [Rhodopseudomonas palustris CGA009]
          Length = 264

 Score = 39.4 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 40  AESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           A+++G       V+EIG G G  T + L  G  +    +   +   I    +   P  L 
Sbjct: 90  ADAAGRLSPSDRVLEIGCGTGG-TAIRLAPGVAQWTATDLSPEMVRIAS--AKPAPPNLS 146

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANL 125
            +  DA             P   +   
Sbjct: 147 FVVADA------DLSTGEPPYDAVCAF 167


>gi|332701619|ref|ZP_08421707.1| tRNA methyltransferase complex GCD14 subunit [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551768|gb|EGJ48812.1| tRNA methyltransferase complex GCD14 subunit [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 301

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH---P 94
               G   G+TV+E G G G+LT  L        KV   E+  +F  +     +      
Sbjct: 87  VMKLGIGPGVTVVEAGCGSGSLTVALAWFVGPQGKVYTHERRPEFLKLNARNLAWAGLDD 146

Query: 95  NRLEIIQDDALK----VDFEKFF-NISSPIRIIANLP 126
            R+  ++ D  +     D +  F ++ +P   +  +P
Sbjct: 147 GRVTHVEKDIAEGFGCTDADALFLDVRTPEDYVGRIP 183


>gi|330804139|ref|XP_003290056.1| hypothetical protein DICPUDRAFT_80806 [Dictyostelium purpureum]
 gi|325079856|gb|EGC33437.1| hypothetical protein DICPUDRAFT_80806 [Dictyostelium purpureum]
          Length = 240

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 10/108 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +  KI +      G + +EIGAG G  +  +  +GA  V  ++ +     I K     + 
Sbjct: 65  LANKIVK-----KGESFLEIGAGSGISSLYVSEIGAN-VTSVDINPDAVEITKLNFKLNK 118

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
               + Q D     +    N S    I  N P+ +    +   + ++ 
Sbjct: 119 LESNVFQSDI----YNSLPNGSKYKYIFWNHPWQVSNESVIQELRSEK 162


>gi|306843215|ref|ZP_07475826.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2]
 gi|306286580|gb|EFM58157.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2]
          Length = 321

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           + ++     G  +++   G G  T+ +L  GA  VI I++D       + +  + P RL 
Sbjct: 1   MIDALKPAPGAVIVDGTFGAGGYTRRILETGAD-VIAIDRDPTAIEAGRAMEKEFPGRLN 59

Query: 99  IIQDDALKVD 108
           +++     +D
Sbjct: 60  LVESRFSALD 69


>gi|302141710|emb|CBI18913.3| unnamed protein product [Vitis vinifera]
          Length = 281

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRL 97
            +      G  ++++G G G   + +       V+ I  ++       L +  +   +  
Sbjct: 120 VDLIDVKPGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNRKAGLDSLC 179

Query: 98  EIIQDDALKVDFEK 111
           E++  + L++ F  
Sbjct: 180 EVVCGNFLQMPFAD 193


>gi|225022944|ref|ZP_03712136.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681942|ref|ZP_07404746.1| putative site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium matruchotii ATCC 14266]
 gi|224944167|gb|EEG25376.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658415|gb|EFM47918.1| putative site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium matruchotii ATCC 14266]
          Length = 571

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 23/121 (19%)

Query: 23  KYMGQN--------FLLDLNILKKIAESSGS-LDGITVIEIGAGPGNLTQMLLT------ 67
           K  GQ+        FL D      I  ++      +T+I+   G G L   +        
Sbjct: 13  KVHGQHYTPPELAEFLADH-----IVAAADLDRPELTIIDPACGDGELLVAVARSLKDAG 67

Query: 68  -LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            LG  K+I  + D       +          ++IQ D L    ++     S   II N P
Sbjct: 68  YLGILKLIGYDIDAAAVEQARARLRDVNRDAQVIQGDFL--LHQRNLPTHSVDIIITNPP 125

Query: 127 Y 127
           Y
Sbjct: 126 Y 126


>gi|218296099|ref|ZP_03496868.1| Methyltransferase type 11 [Thermus aquaticus Y51MC23]
 gi|218243476|gb|EED10005.1| Methyltransferase type 11 [Thermus aquaticus Y51MC23]
          Length = 263

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 33  LNILKKIAESSG-----SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
             +  +IA + G       +   ++E+G G G +   L+  G R +  ++ D     + +
Sbjct: 20  PEVAGRIATAIGHAVAARGEEPVLLELGVGTGRIALPLIARGYRYL-ALDCDPAMLEVFQ 78

Query: 88  DISSQHPNRLEIIQDDALKVDFE 110
             ++    ++ ++  DA ++   
Sbjct: 79  KKAAGVMRKVRLLLADAREIPLP 101


>gi|39997426|ref|NP_953377.1| cyclopropane-fatty-acyl-phospholipid synthase [Geobacter
           sulfurreducens PCA]
 gi|39984317|gb|AAR35704.1| cyclopropane-fatty-acyl-phospholipid synthase [Geobacter
           sulfurreducens PCA]
          Length = 421

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
            +I  +      + ++EIG G G            +V      ++ F +  +    +   
Sbjct: 186 DRICRALHLRPDMELLEIGTGWGGFAIHAAEHYGCRVTTTTISRRQFSLAAERIREAGLD 245

Query: 95  NRLEIIQDD 103
           +R+ ++Q D
Sbjct: 246 DRITLLQRD 254


>gi|33594351|ref|NP_881995.1| hypothetical protein BP3472 [Bordetella pertussis Tohama I]
 gi|33595533|ref|NP_883176.1| hypothetical protein BPP0848 [Bordetella parapertussis 12822]
 gi|33599931|ref|NP_887491.1| hypothetical protein BB0942 [Bordetella bronchiseptica RB50]
 gi|33564426|emb|CAE43735.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|33565611|emb|CAE40257.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33567528|emb|CAE31441.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
 gi|332383762|gb|AEE68609.1| hypothetical protein BPTD_3424 [Bordetella pertussis CS]
          Length = 206

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQD 102
           G      V+++ AG G L     + GA +V ++E+D+     L+ +  +     + I   
Sbjct: 52  GEFADKRVLDLFAGSGALGFEAASRGAGQVQMVERDRGAAAALRTLRDKLQAGAVRIHAG 111

Query: 103 DALKV 107
           DA++V
Sbjct: 112 DAMQV 116


>gi|18311883|ref|NP_558550.1| cobalt-precorrin-6Y C(15)-methyltransferase [Pyrobaculum aerophilum
           str. IM2]
 gi|48428122|sp|Q8ZZA9|CBIT_PYRAE RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|18159297|gb|AAL62732.1| cobalamin biosynthesis precorrin-8W decarboxylase (cbiT)
           [Pyrobaculum aerophilum str. IM2]
          Length = 196

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLE 98
              + G T++++G G G ++    L+     KV  I+KD     I K  +++    +RL 
Sbjct: 36  LRLIKGGTLVDVGCGTGTISVEAALIMGEGSKVYAIDKDPLAVEITKKNAAKFGVGDRLI 95

Query: 99  IIQDDALKV 107
           + + DAL++
Sbjct: 96  VAEGDALEL 104


>gi|319902147|ref|YP_004161875.1| methyltransferase small [Bacteroides helcogenes P 36-108]
 gi|319417178|gb|ADV44289.1| methyltransferase small [Bacteroides helcogenes P 36-108]
          Length = 235

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD--ISSQHPNRLEI 99
           +   +   V+++G G G +   L    +  K+  IE D       +D  + S   +R+E+
Sbjct: 33  APVANAKRVLDVGTGTGLIALQLAQRNSDAKITAIEIDIAAAKQARDNVLHSSWADRIEV 92

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +  D      E  F++     I++N PY I
Sbjct: 93  VCIDFRNYQSEDKFDL-----IVSNPPYFI 117


>gi|312085258|ref|XP_003144607.1| hypothetical protein LOAG_09030 [Loa loa]
 gi|307760229|gb|EFO19463.1| hypothetical protein LOAG_09030 [Loa loa]
          Length = 604

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%)

Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          +       V++IG G G LT +      R V   E D     I + I ++
Sbjct: 26 ANWRPESRVLDIGTGTGLLTSIARRHFKRDVYCCEVDVNMCDIAEKILNE 75


>gi|262282350|ref|ZP_06060118.1| methyltransferase domain-containing protein [Streptococcus sp.
           2_1_36FAA]
 gi|262261641|gb|EEY80339.1| methyltransferase domain-containing protein [Streptococcus sp.
           2_1_36FAA]
          Length = 197

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 30/174 (17%)

Query: 25  MGQN--FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+ +        +     G T++++G G G L   L+   A K 
Sbjct: 24  LGQPMTFLTDAGVFSKKMIDYGSQVLLSTIDFSIGDTILDLGCGYGPLGLTLVKSQAVKA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  +  +    EI Q +        F        II+N P   G ++
Sbjct: 84  TLVDINLRALDLARKNAELNGVSAEIFQSNIYDQVTGVF------DHIISNPPIRAGKQV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK------------EVGERITAQKNSPHYGRL 174
           +   I+           LT++ QK            EV       K    Y  L
Sbjct: 138 VHQVIAGSLEHLTLGGDLTIVIQKKQGAPSAKAKMEEVFGNCEVVKKDKGYYIL 191


>gi|196233324|ref|ZP_03132169.1| Methyltransferase type 11 [Chthoniobacter flavus Ellin428]
 gi|196222629|gb|EDY17154.1| Methyltransferase type 11 [Chthoniobacter flavus Ellin428]
          Length = 343

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 7/134 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+L+  +      AR   V     Q   I  + + +    L II
Sbjct: 113 AELADGQRILELGCGWGSLSLWMAEKYPQARITAVSNSRTQKEHIDAEAAQRGWPNLTII 172

Query: 101 QDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
             D    D  + F+ + S         Y +    +  W++    P     + +   +E+ 
Sbjct: 173 TADMNVFDIAETFDRVVSVEMFEHMKNYQLLLARVARWLA----PGGKLFVHIFTHREIA 228

Query: 160 ERITAQKNSPHYGR 173
                +  S    R
Sbjct: 229 YHYEDKGPSDWMTR 242


>gi|196248969|ref|ZP_03147669.1| ribosomal protein L11 methyltransferase [Geobacillus sp. G11MC16]
 gi|196211845|gb|EDY06604.1| ribosomal protein L11 methyltransferase [Geobacillus sp. G11MC16]
          Length = 315

 Score = 39.4 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQD 102
              G  VI++G G G L+     LGA  V  ++ D        L    ++  + + + Q+
Sbjct: 176 VHPGDNVIDVGTGSGILSIAAAMLGAHSVRALDLDPVAIDSARLNVKLNKVQHVVTVAQN 235

Query: 103 DALKVDFEK 111
           + L    E+
Sbjct: 236 NLLDHIDEQ 244


>gi|307705718|ref|ZP_07642564.1| methyltransferase domain protein [Streptococcus mitis SK597]
 gi|307620732|gb|EFN99822.1| methyltransferase domain protein [Streptococcus mitis SK597]
          Length = 195

 Score = 39.4 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 65/162 (40%), Gaps = 4/162 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL +L + + + +    L    +++ G G G LT  L    A+ V +++  ++     + 
Sbjct: 19  FLANL-VCQAVEKQIDLLSDKEILDFGGGTGLLTLPLAKQ-AKFVTLVDISEKMLEQARL 76

Query: 89  ISSQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPF 146
            + Q   + ++ ++ D L+   EK F++    R++ ++P       LF+  +  +     
Sbjct: 77  KAEQQDIKNIQFLERDLLEKPLEKEFDLIVVCRVLHHMPDLDAALSLFHQHLRENGQLLL 136

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
            +           E +  +     +G  SV +     A  +F
Sbjct: 137 ADFTKTEASHHGFELVELENKLAQFGFSSVHSQILYSAEDLF 178


>gi|325674361|ref|ZP_08154050.1| aklanonic acid methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325555041|gb|EGD24714.1| aklanonic acid methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 279

 Score = 39.4 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPIL-KDISS 91
           I  ++  +     G   +++G G G +   L      + +V  I+   +   +  ++  +
Sbjct: 35  IADRLVRAVAPRPGARALDVGCGRGAVLFRLADAVGPSGEVTGIDLAPRMVAVTGREART 94

Query: 92  QHPNRLEIIQDDALK 106
           +    + +   DA++
Sbjct: 95  RGLTNVHVQVMDAMR 109


>gi|260892998|ref|YP_003239095.1| Methyltransferase type 11 [Ammonifex degensii KC4]
 gi|260865139|gb|ACX52245.1| Methyltransferase type 11 [Ammonifex degensii KC4]
          Length = 229

 Score = 39.4 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 27/147 (18%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-------------- 93
           G  V+E+G   G LT+ L       V  +E D +     +   +Q               
Sbjct: 30  GKKVLEVGCATGYLTRALKERFWCTVDAVEIDPEAAARARPFCAQLLVGDVEELPLEVYF 89

Query: 94  -PNRLEII-QDDALKVDFEKFF-------NISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            P   ++I   D L+   E +         +     ++A++P      ++          
Sbjct: 90  APESYDVILLADVLEHLREPWMVLRRLRPLLREKGYVVASIPNIAHAAVILELFEGRFRY 149

Query: 145 PFW----ESLTLLFQKEVGERITAQKN 167
                  E+    F +E  E + A   
Sbjct: 150 RPRGLLDETHLRFFTREGVEELFAGNG 176


>gi|217978178|ref|YP_002362325.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylocella
           silvestris BL2]
 gi|217503554|gb|ACK50963.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylocella
           silvestris BL2]
          Length = 417

 Score = 39.4 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           QNF+LD               G  V+EIG G G+L Q L+  G 
Sbjct: 181 QNFILDQ---------LALSGGERVLEIGCGWGSLAQKLIERGC 215


>gi|153870300|ref|ZP_01999730.1| hypothetical protein BGP_0907 [Beggiatoa sp. PS]
 gi|152073233|gb|EDN70269.1| hypothetical protein BGP_0907 [Beggiatoa sp. PS]
          Length = 86

 Score = 39.4 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
          I +      G  ++E+GAG G+ +Q+LL      +  IE  Q  FP+L +     P+
Sbjct: 28 ILDEFRPFLGSHLLEVGAGTGDFSQLLLQTQPTSLTTIEPSQNMFPLLDEKLKNEPH 84


>gi|28210764|ref|NP_781708.1| caffeoyl-CoA O-methyltransferase [Clostridium tetani E88]
 gi|28203202|gb|AAO35645.1| caffeoyl-coA O-methyltransferase [Clostridium tetani E88]
          Length = 215

 Score = 39.4 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 43  SGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLE 98
                   ++E+G   G   +     + G   +  IE+D+    +  +    S +  +++
Sbjct: 51  INIKKPKRILELGTAIGYSAILMEKASQGKSSITTIERDRDMVALANENIKKSGYEEKIK 110

Query: 99  IIQDDALKV 107
           I++ D L+V
Sbjct: 111 IVEGDCLEV 119


>gi|313902542|ref|ZP_07835943.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467228|gb|EFR62741.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 303

 Score = 39.4 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 21/102 (20%)

Query: 2   TMNNKSHSLKTILSHYKI-IPK-------KYMGQNFLLDLNILKKIAESSGSLDGITVIE 53
           +   +   L+  L  Y + +P+       K +GQ           I   S    G  V+E
Sbjct: 50  STGGRLRVLRPTLEEYILAMPRRTQVIYPKDLGQ-----------IIIRSNLRPGDRVLE 98

Query: 54  IGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
            G G G  T  LL       +VI  E+  +F  + ++   + 
Sbjct: 99  AGVGSGATTLALLQAVGPGGQVISYERRAEFARLARENVERF 140


>gi|294626921|ref|ZP_06705512.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598781|gb|EFF42927.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 356

 Score = 39.4 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +        I    + +     IL+    +  + +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERYPDASITAVSNSRPQRAHILEQCRVRGLSNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQK 156
             D  AL +    F  + S         Y      + +W++     +   +    L +  
Sbjct: 186 TADVNALTLPPGDFDRVVSVEMFEHMRNYRDLLARVGSWLAPGGKLFVHIFCHRDLAYPF 245

Query: 157 EVG 159
           EV 
Sbjct: 246 EVA 248


>gi|91776075|ref|YP_545831.1| methyltransferase small [Methylobacillus flagellatus KT]
 gi|91710062|gb|ABE49990.1| methyltransferase small [Methylobacillus flagellatus KT]
          Length = 368

 Score = 39.4 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              +   D +   +IG G G L  +L   G +KVI  ++D +     ++   +     ++
Sbjct: 182 VAQAPLPDKMLAFDIGTGSGVLAAVLAKRGVQKVIATDQDARALACARENMQRLGLEAQV 241

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
                 +V     F       I+ N P+
Sbjct: 242 ------EVLSCNLFPPGKAPLIVCNPPW 263


>gi|33597592|ref|NP_885235.1| protein-L-isoaspartate O-methyltransferase [Bordetella
           parapertussis 12822]
 gi|81579164|sp|Q7W671|PIMT_BORPA RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|209573211|sp|Q7WI37|PIMT_BORBR RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|33574020|emb|CAE38343.1| protein-L-isoaspartate O-methyltransferase [Bordetella
           parapertussis]
          Length = 259

 Score = 39.4 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQ 92
           + + IA          V+E+GAG G    +L  +  R+V  IE+ +  + + +    + +
Sbjct: 112 VARMIAAVCEDRAPARVLEVGAGCGYQAAVLAQI-VREVHAIERIRGLYELARGHLRALR 170

Query: 93  HPNRLEIIQDDAL 105
              R+ +I  D +
Sbjct: 171 LATRVRLIHGDGM 183


>gi|94312493|ref|YP_585703.1| sun protein [Cupriavidus metallidurans CH34]
 gi|93356345|gb|ABF10434.1| tRNA and rRNA cytosine-C5-methylase (sun protein) [Cupriavidus
           metallidurans CH34]
          Length = 457

 Score = 39.4 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              DG+ V++  A PG  T  LL L    V  +E D +    + +  ++   R E+I  D
Sbjct: 260 EVADGMRVLDACAAPGGKTGHLLELADIHVTAVESDAERAARIHENLARLDQRAEVIVGD 319

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIG 130
           A +   + +++     RI+A++P +  
Sbjct: 320 ASR--PKDWWDGQQFDRILADVPCSAS 344


>gi|312886232|ref|ZP_07745846.1| protein-L-isoaspartate O-methyltransferase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301257|gb|EFQ78312.1| protein-L-isoaspartate O-methyltransferase [Mucilaginibacter
           paludis DSM 18603]
          Length = 218

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E      G  V+EIG G G  T +LL LGA +V  IE+ ++ +     +      +    
Sbjct: 78  ELLHIRKGDKVLEIGTGCGYQTCILLELGA-EVYTIERQEKLYLRTIQVLPHMGYKTNFF 136

Query: 101 QDD 103
             D
Sbjct: 137 CGD 139


>gi|304390591|ref|ZP_07372544.1| SAM-dependent methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315657798|ref|ZP_07910678.1| SAM-dependent methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|304326347|gb|EFL93592.1| SAM-dependent methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491595|gb|EFU81206.1| SAM-dependent methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 238

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +  ++ +++    G  V+E   G G   ++++         ++KD      +++I +   
Sbjct: 9   LTNRMLQAADI-PGKRVVEFAPGLGKTAKIIIDAPVESYTGVDKDPDAAQRVQNIVADSG 67

Query: 95  NRLEIIQDDA 104
            R  ++Q DA
Sbjct: 68  GR--VVQADA 75


>gi|288541515|gb|ADC45587.1| C5-O-methyltransferase [Streptomyces nanchangensis]
          Length = 286

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDI 89
             +   +    G + G  V+++G G G  T  L      +V+ +       +    L + 
Sbjct: 51  DRLTDHLIGKLGDIAGRRVLDVGCGSGRPTVRLAQRAPTEVVGVTVSPVQIERATALAER 110

Query: 90  SSQHPNRLEIIQDDALKVDFEK 111
                +R+  I+ DA+ + F  
Sbjct: 111 -EGVADRVRFIRADAMALPFPD 131


>gi|288923770|ref|ZP_06417862.1| tRNA (adenine-N(1)-)-methyltransferase [Frankia sp. EUN1f]
 gi|288344886|gb|EFC79323.1| tRNA (adenine-N(1)-)-methyltransferase [Frankia sp. EUN1f]
          Length = 422

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH 93
              I   +    G  V+E GAG G L+  LL       +++  E+   F  + +      
Sbjct: 170 AAAIVMYADVFPGARVLEAGAGSGALSCALLRAVGDGGRLVSYERRADFAEVARKNVEAF 229


>gi|256390789|ref|YP_003112353.1| methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
 gi|256357015|gb|ACU70512.1| Methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
          Length = 229

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
                L G  VIE+GAG G L          +V+ +E +     + +  +   P  ++++
Sbjct: 33  RLLADLSGD-VIEVGAGNG-LNFPRYPHAVDRVVAVEPEPDLRALAERAARSAPVPVQVV 90

Query: 101 QD--DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +   +AL      F    + + + +     I    +   +       F+E +
Sbjct: 91  EGRAEALPFPDGSFDAAVACLMLCSVADQGIALTEIARVLRPGGTLHFFEHV 142


>gi|296127792|ref|YP_003635044.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
 gi|296019608|gb|ADG72845.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
          Length = 405

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 14  LSHYKIIPKKYMGQNFL---LDLNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLG 69
           L +  I  +K +GQ F    +   +LKK+   S   D + +++   G G  +        
Sbjct: 13  LKNTDIEKRKRLGQYFTPKSIRELLLKKLISISDKKDNVKILDPACGSGEFILSFKEYFN 72

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +   E D+    I K +     N  +I   D LK+D EK         +I N PY
Sbjct: 73  NPHLYGFEIDESLVSISKKLI----NNADIKCIDTLKIDIEKSIKYD---YVIGNPPY 123


>gi|167555081|ref|NP_001107891.1| hemK methyltransferase family member 1 [Danio rerio]
 gi|161611486|gb|AAI55790.1| Hemk1 protein [Danio rerio]
          Length = 342

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 52  IEIGAGPGNLTQMLLT-LGARKVIVIEK--DQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           +E+G G G ++  LL  L   +V  +++  D     +         +RLE+   D +K  
Sbjct: 167 LEVGCGSGAISLSLLRSLPQLRVFALDQSQDAVCLTMENANRLGLQDRLEVHHLDVVKDA 226

Query: 109 FEKFFNISSPIRIIANLPYNIGTRL 133
                  +    I++N PY +   +
Sbjct: 227 DVILSKCNPVDFIVSNPPYILSQDM 251


>gi|22255863|gb|AAM94788.1| CalE5 [Micromonospora echinospora]
          Length = 294

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           +   +  ++G   G  V+++G G G  +++   L     +V+ I+   +     +  ++ 
Sbjct: 32  VTDWLLRAAGLRPGHRVLDVGCGTGEPSVSAGRLVAPTGRVLGIDLSPEMVDRARRCAAG 91

Query: 93  HPNRLEIIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             + ++  + D  AL +    F  + S   ++  +        L   ++
Sbjct: 92  LGHPIDFAESDVEALDLPAHSFDAVLSRWGLMFAVDRQRTLTDLHRLLA 140


>gi|328882941|emb|CCA56180.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           venezuelae ATCC 10712]
          Length = 433

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L  IA      +G  ++++G G G++          +V+ I   ++     +   ++   
Sbjct: 189 LDLIARKLNLKEGDRLLDVGCGWGSMALHAARAYGARVVGITLSREQAAYARKRIAEEGL 248

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRI--IANLPYNIGTRLLFNWIS 139
            +R+EI   D   V    +  ISS      +  + Y     +L+  + 
Sbjct: 249 TDRIEIRVQDYRDVTDGPYDAISSIGMAEHVGAVRYREYADILYGLLR 296


>gi|326330211|ref|ZP_08196522.1| methyltransferase domain protein [Nocardioidaceae bacterium
          Broad-1]
 gi|325952024|gb|EGD44053.1| methyltransferase domain protein [Nocardioidaceae bacterium
          Broad-1]
          Length = 299

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
            +G  V+EIGAGPG  T  L  LGA  V+ 
Sbjct: 63 LREGDRVLEIGAGPGRFTTALADLGASVVVA 93


>gi|310801469|gb|EFQ36362.1| beta-ketoacyl synthase domain-containing protein [Glomerella
            graminicola M1.001]
          Length = 3021

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 15/139 (10%)

Query: 51   VIEIGAGPGNLTQMLLTLGA----RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            ++EIGAG G  T+ +L              +    FF    +  +Q  +++E    D  +
Sbjct: 1435 ILEIGAGTGGATRYILDQDPAPAFNSYTFTDISTSFFEKAHETFAQFEDKMEFQALDVRR 1494

Query: 107  VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
               E+ F   S   IIA+           N + A        +      K  G  +  + 
Sbjct: 1495 SPVEQGFTPHSYDLIIAS-----------NVLHATPNLQETMANVRTLLKPGGNIVVVEL 1543

Query: 167  NSPHYGRLSVLTGWRTKAT 185
             SP + R+  + G      
Sbjct: 1544 TSPRHSRIGFIFGLFADWW 1562


>gi|289522935|ref|ZP_06439789.1| protein-L-isoaspartate O-methyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503959|gb|EFD25123.1| protein-L-isoaspartate O-methyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 217

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E      G  V+EIG G G    +L  LG  +V  IE+       L + + +
Sbjct: 66  PYIVAKMTELLDPQKGDKVLEIGTGSGYQAAVLAFLGC-EVYTIER----IAALSERAKK 120

Query: 93  HPNRLEI 99
              +L I
Sbjct: 121 VFEKLGI 127


>gi|284164589|ref|YP_003402868.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284014244|gb|ADB60195.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 235

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 23  KYM---GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           K     GQ  L+D    + + E+   ++   ++EI  G G  T ML   GA  V+ ++  
Sbjct: 19  KRFSRGGQ--LIDRREKEAVLEAIMPVEDRNILEIACGTGRFTVMLAQQGAD-VVGLDIS 75

Query: 80  QQFFP--ILKDISSQHPNRLEIIQDDALKVDFEK 111
                    K   +     +E ++ DA ++ F  
Sbjct: 76  AAMLQQGREKTKDAALEGTIEFLRGDAGRLPFPD 109


>gi|260427518|ref|ZP_05781497.1| phospholipid N-methyltransferase PmtA [Citreicella sp. SE45]
 gi|260422010|gb|EEX15261.1| phospholipid N-methyltransferase PmtA [Citreicella sp. SE45]
          Length = 212

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 50  TVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
            V+E+G G G +T+ +L  G   R + ++E +  F  +L++   +
Sbjct: 69  PVVELGPGTGKITRQILAHGVAPRDLHLLEINDDFVTLLQERFPE 113


>gi|229829476|ref|ZP_04455545.1| hypothetical protein GCWU000342_01566 [Shuttleworthia satelles DSM
           14600]
 gi|229791907|gb|EEP28021.1| hypothetical protein GCWU000342_01566 [Shuttleworthia satelles DSM
           14600]
          Length = 254

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 10/137 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD--ISSQHPN 95
           A  + + +G  V+++G G G +  +L+    G  +   +E       + +     +   +
Sbjct: 42  AAFANNKEGDRVLDLGTGTGVI-PILMEARYGGAEYKALEIQADSCDMARRSARLNGLED 100

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY-NIGTRLLFNWISADTWPPFWESLTLLF 154
           R+EI++ D  +    + F  +S   +  N PY      L                     
Sbjct: 101 RIEIVEGDLTRAH--EIFGPASFDVVTCNPPYMTNKHGLTNPSGPMAIARHELLCSLEDV 158

Query: 155 QKEVGERITAQKNSPHY 171
            +E    +  +     Y
Sbjct: 159 VRETARLL--RPGGHSY 173


>gi|225075899|ref|ZP_03719098.1| hypothetical protein NEIFLAOT_00922 [Neisseria flavescens
           NRL30031/H210]
 gi|224952755|gb|EEG33964.1| hypothetical protein NEIFLAOT_00922 [Neisseria flavescens
           NRL30031/H210]
          Length = 232

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++A+        TV+EIG G G  T  LL+  A KV+  + D       +  + +
Sbjct: 77  PKVVARLAQGLKLKKDETVLEIGTGSGYAT-ALLSKLAGKVVTDDID----AEQQQRAKK 131

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             + L     D ++ +     +  +P   I
Sbjct: 132 VLDELGFANVDYVQNNGLTEASQGAPFDAI 161


>gi|239827773|ref|YP_002950397.1| ribosomal protein L11 methyltransferase [Geobacillus sp. WCH70]
 gi|239808066|gb|ACS25131.1| ribosomal protein L11 methyltransferase [Geobacillus sp. WCH70]
          Length = 315

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQDD 103
             G TVI++G G G L+     LGA+ V  ++ D        L    ++  + + + Q++
Sbjct: 177 KPGDTVIDVGTGSGILSIAAAMLGAKSVRALDLDPVAVDSARLNVKLNKVQHIVTVSQNN 236

Query: 104 ALKVDFEK 111
            L    E+
Sbjct: 237 LLDHIEEQ 244


>gi|149186694|ref|ZP_01865005.1| hypothetical fusion protein [Erythrobacter sp. SD-21]
 gi|148829602|gb|EDL48042.1| hypothetical fusion protein [Erythrobacter sp. SD-21]
          Length = 655

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + +++    G  V+E+GAG G     +L+  A  V  IE+       L   ++ 
Sbjct: 66  PFIVACMMDAAEVGTGDRVLEVGAGSGY-AAAVLSRIAGHVHAIER----HEALARQAAA 120

Query: 93  HPNRL-----EIIQDDALK-VDFEKFFNISSPIRIIANLPYNIGTRL 133
              +L     EII  D L  +  E  F+         ++P  +  +L
Sbjct: 121 RIEQLGYDNCEIIAGDGLNGLPDEAPFDAIVVAARFDSVPETLKRQL 167


>gi|159897650|ref|YP_001543897.1| type 11 methyltransferase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890689|gb|ABX03769.1| Methyltransferase type 11 [Herpetosiphon aurantiacus ATCC 23779]
          Length = 293

 Score = 39.4 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            +++ +     DG TV++ G G G  TQM+  L  R + V+  D+ F  +L  +  +H N
Sbjct: 35  ARRLMQYLDLQDGDTVLDCGCGYGFYTQMIDKL--RDLHVVGFDEAFDRLL--VGQEHAN 90

Query: 96  RLEIIQDD 103
           R   ++ D
Sbjct: 91  RATFVRGD 98


>gi|332360339|gb|EGJ38151.1| methyltransferase domain protein [Streptococcus sanguinis SK49]
          Length = 195

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAES--------SGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+ +              G  V+++G G G L   L        
Sbjct: 24  LGQRLTFLTDAGVFSKKMIDYGSRVLLSVLDFEAGERVLDVGCGYGPLGLTLAKAQGVTA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +Q+   + +  + ++    EI Q +  +      F+      II+N P   G ++
Sbjct: 84  TMVDINQRALDLAQKNAERNQISAEIFQSNVYE-KVNGIFD-----HIISNPPIRAGKQV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK 156
           +   IS           LTL+ QK
Sbjct: 138 VHEVISGSYEHLTEGGDLTLVIQK 161


>gi|326779303|ref|ZP_08238568.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326659636|gb|EGE44482.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 331

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++  + ++ G  DG TV+EIG GPG    +L    G   V  ++ D +     +   +
Sbjct: 103 PSLMALMLDALGLRDGHTVLEIGTGPGYNAALLAHRLGDSAVTSVDLDPEITESARGHLA 162

Query: 92  QHPNRLEIIQDD 103
                  ++  D
Sbjct: 163 AAGYHPTVVTGD 174


>gi|301097351|ref|XP_002897770.1| histone-arginine methyltransferase, putative [Phytophthora
           infestans T30-4]
 gi|262106518|gb|EEY64570.1| histone-arginine methyltransferase, putative [Phytophthora
           infestans T30-4]
          Length = 349

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 27  QNFLLD---LNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           QN L D       ++ A  S   D     V+++G G G L    +  GARKV  +E    
Sbjct: 6   QNMLQDHVRTGTYER-AMLSNPTDFRDKVVLDVGTGSGILAFFAIKAGARKVYAVEL-SN 63

Query: 82  FFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNI 115
                +++ + +   +R+ +I+    +V+  +  ++
Sbjct: 64  MAECARELVAANGLSDRITVIKGKMEEVELPELVDV 99


>gi|146341119|ref|YP_001206167.1| putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase
           [Bradyrhizobium sp. ORS278]
 gi|146193925|emb|CAL77942.1| Putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase
           [Bradyrhizobium sp. ORS278]
          Length = 285

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++ +IA       G  +++IG G G L+  L    A    V+  D    P+L       P
Sbjct: 43  LIDRIAA----RPGDRILDIGCGCGGLSIALGGQVAPNGAVLGVD-ISAPMLARAREMAP 97

Query: 95  NRL--EIIQDDA 104
             L  E +  DA
Sbjct: 98  AGLPVEFVLADA 109


>gi|119510453|ref|ZP_01629586.1| hypothetical protein N9414_01667 [Nodularia spumigena CCY9414]
 gi|119464875|gb|EAW45779.1| hypothetical protein N9414_01667 [Nodularia spumigena CCY9414]
          Length = 241

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 15/142 (10%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-N 95
           KI  +        V +IGAG G L+  +  L    KV+ ++   +   I+     +   +
Sbjct: 76  KIVSALNLQPDNVVADIGAGTGYLSFRIAPLLTDGKVLAVDIQPEMLEIINFFQQEKNIS 135

Query: 96  RLEIIQD--------DA---LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
            +E I          DA   L +  + +  +  P  ++  +   +        +      
Sbjct: 136 NVEPILATLTNPNLPDASVDLALMVDAYHELEYPQEVMTGIVKALKPGGKVVLVEYRGEN 195

Query: 145 PF--WESLTLLFQKEVGERITA 164
           P    + L  + QK+V + + A
Sbjct: 196 PLIMIKRLHKMTQKQVRKEMQA 217


>gi|317404456|gb|EFV84869.1| hypothetical protein HMPREF0005_02517 [Achromobacter xylosoxidans
           C54]
          Length = 226

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             +  ++A+         V+EIG G G     LL   A++V  +E D +     +    
Sbjct: 74  PKVEARLAQELQLSKSDCVLEIGTGSGY-QAALLGYLAQQVTSVEIDSRLVTFAQQNLQ 131


>gi|312139828|ref|YP_004007164.1| sam dependent methyltransferase [Rhodococcus equi 103S]
 gi|311889167|emb|CBH48481.1| putative SAM dependent methyltransferase [Rhodococcus equi 103S]
          Length = 279

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPIL-KDISS 91
           I  ++  +     G   +++G G G +   L      + +V  I+   +   +  ++  +
Sbjct: 35  IADRLVRAVAPRPGARALDVGCGRGAVLFRLADAVGPSGEVTGIDLAPRMVAVTGREART 94

Query: 92  QHPNRLEIIQDDALK 106
           +    + +   DA++
Sbjct: 95  RGLTNVHVQVMDAMR 109


>gi|294667347|ref|ZP_06732566.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602899|gb|EFF46331.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 356

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +      A    V     Q   IL+    +  + +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERYSNASITAVSNSRPQRAHILEQCRVRGLSNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQK 156
             D  AL +    F  + S         Y      + +W++     +   +    L +  
Sbjct: 186 TADVNALTLPPGDFDRVVSVEMFEHMRNYRDLLARVGSWLAPGGKLFVHIFCHRDLAYPF 245

Query: 157 EVG 159
           EV 
Sbjct: 246 EVA 248


>gi|239831821|ref|ZP_04680150.1| Protein-L-isoaspartate O-methyltransferase [Ochrobactrum
           intermedium LMG 3301]
 gi|239824088|gb|EEQ95656.1| Protein-L-isoaspartate O-methyltransferase [Ochrobactrum
           intermedium LMG 3301]
          Length = 222

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            +L      P+      +L++ +   K+ + +   +   V+++G G G  +  +L+  A 
Sbjct: 54  QLLESEGKQPR------YLMEPSPFAKLVQLASIKNTDVVLDVGCGTGY-SAAILSKLAG 106

Query: 72  KVIVIEKDQQF-FPILKDISSQHPNRLEIIQD 102
            VI +E D          ++    + + I+  
Sbjct: 107 SVIGLESDSVLSAAATARLAELGYDNVVIVSG 138


>gi|291295034|ref|YP_003506432.1| tRNA (adenine-N(1)-)-methyltransferase [Meiothermus ruber DSM 1279]
 gi|290469993|gb|ADD27412.1| tRNA (adenine-N(1)-)-methyltransferase [Meiothermus ruber DSM 1279]
          Length = 266

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 11/144 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP-- 94
           I        G+ V+E GAG G LT  L        +V   E   +     +    ++   
Sbjct: 85  ICFLLDLAPGMRVLEAGAGSGGLTLYLARAVGPTGQVWSYESRLRHLERARRNLGEYEDW 144

Query: 95  NRLEIIQDDALKVDFEK------FFNISSPIRIIANL-PYNIGTRLLFNWISADTWPPFW 147
             +  +Q D  + +           ++  P  ++ ++ P     R L  ++   T     
Sbjct: 145 GNVTFVQGDLAQAELPPSSFDGVALDLMEPWSVLHSIVPALKIDRFLVCYLPNLTQVVTL 204

Query: 148 ESLTLLFQKEVGERITAQKNSPHY 171
                  Q       T +     +
Sbjct: 205 LEQIKTLQLPFLHERTLEVQHREW 228


>gi|227544100|ref|ZP_03974149.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Lactobacillus reuteri CF48-3A]
 gi|300909801|ref|ZP_07127262.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Lactobacillus reuteri SD2112]
 gi|227185918|gb|EEI65989.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Lactobacillus reuteri CF48-3A]
 gi|300893666|gb|EFK87025.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Lactobacillus reuteri SD2112]
          Length = 233

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                      +++  G G+LT  L     A +V  ++ +++   I K+  ++    L +
Sbjct: 45  NQLQIKPTDNALDVCCGTGDLTIALAKRISAGRVTGLDFNKEMLEIAKEK-TKMIGNLFL 103

Query: 100 IQDDALKVDFEK 111
           +Q DA+ + F+ 
Sbjct: 104 VQGDAMALPFDD 115


>gi|255551749|ref|XP_002516920.1| protein arginine n-methyltransferase, putative [Ricinus communis]
 gi|223544008|gb|EEF45534.1| protein arginine n-methyltransferase, putative [Ricinus communis]
          Length = 541

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDA 104
           G  V+++GAG G L+      GA+ V  +E   +     + + + +P+   R+ +I+   
Sbjct: 191 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEA-SEMAEYARKLIAGNPSLGERITVIKGKV 249

Query: 105 LKVDFEKFFNI 115
            +V+  +  +I
Sbjct: 250 EEVELPEKADI 260


>gi|254464677|ref|ZP_05078088.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacterales
           bacterium Y4I]
 gi|206685585|gb|EDZ46067.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacterales
           bacterium Y4I]
          Length = 401

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHP 94
             + +  G   G  V+EIG G G   +        +V  +   ++     ++    +   
Sbjct: 175 ASMVDQMGVKPGDHVLEIGCGWGGFAEYAAGQRGLRVTGLTISKEQLRFARERLEKAGLS 234

Query: 95  NRLEIIQDD 103
           +R+E+   D
Sbjct: 235 DRVELRLQD 243


>gi|118486172|gb|ABK94929.1| unknown [Populus trichocarpa]
          Length = 544

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDA 104
           G  V+++GAG G L+      GA+ V  +E   +     + + + +P+   R+ +I+   
Sbjct: 193 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEA-SEMAEYARKLIAGNPSLGKRITVIKGKV 251

Query: 105 LKVDFEKFFNI 115
            +V+  +  +I
Sbjct: 252 EEVELPEKADI 262


>gi|163854093|ref|YP_001642136.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium extorquens PA1]
 gi|218533038|ref|YP_002423854.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium chloromethanicum CM4]
 gi|163665698|gb|ABY33065.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium extorquens PA1]
 gi|218525341|gb|ACK85926.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium chloromethanicum CM4]
          Length = 216

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ ++     G   +++G G G    ML  LGA +V+ +E D       ++    
Sbjct: 68  PMLLARLIQALKIRPGTRALDVGTGYGYGAAMLRQLGA-EVVALESDPDLIGAARERLGD 126

Query: 93  HPNRLE 98
             N ++
Sbjct: 127 TVNLVQ 132


>gi|150401405|ref|YP_001325171.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus aeolicus Nankai-3]
 gi|150014108|gb|ABR56559.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus aeolicus Nankai-3]
          Length = 187

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LE 98
                      V++IG G G +T  +     + V  I+         K    +   +  E
Sbjct: 32  IGKLQLKPNDVVVDIGCGSGGMTVEIAKRC-KFVYAIDGSDNAINTTKKNLERFNIKNCE 90

Query: 99  IIQDDA----LKVDFEKFF 113
           II +DA    L +DF K F
Sbjct: 91  IINEDAENILLNLDFNKAF 109


>gi|138896075|ref|YP_001126528.1| ribosomal protein L11 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|166223415|sp|A4IR29|PRMA_GEOTN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|134267588|gb|ABO67783.1| Ribosomal protein L11 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 312

 Score = 39.4 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQD 102
              G  VI++G G G L+     LGA  V  ++ D        L    ++  + + + Q+
Sbjct: 173 VHPGDNVIDVGTGSGILSIAAAMLGAHSVRALDLDPVAIDSARLNVKLNKVQHVVTVAQN 232

Query: 103 DALKVDFEK 111
           + L    E+
Sbjct: 233 NLLDHIDEQ 241


>gi|319400944|gb|EFV89163.1| methyltransferase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 211

 Score = 39.4 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPI 85
           Q  ++D   L  I +         ++EIG   G  +     +     V  IE+++    +
Sbjct: 30  QVPIVDKLTLDLIRQLIRMNRTKNILEIGTAIGYSSMQFANISKDINVTTIERNEDMIHL 89

Query: 86  LKDISS--QHPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            K      ++ N++ II+ DAL       D +         +  +   + + T LL  
Sbjct: 90  AKKFIKKYRYQNQIRIIEYDALNAFEQVNDKQYDMIFIDAAKAQSKKFFQLYTPLLKK 147


>gi|315654298|ref|ZP_07907206.1| SAM-dependent methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315491333|gb|EFU80950.1| SAM-dependent methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 238

 Score = 39.4 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +  ++ +++    G  V+E   G G   ++++         ++KD      +++I +   
Sbjct: 9   LTNRMLQAADI-PGKRVVEFAPGLGKTAKIIIDAPVESYTGVDKDPDAAQRVQNIVADSG 67

Query: 95  NRLEIIQDDA 104
            R  ++Q DA
Sbjct: 68  GR--VVQADA 75


>gi|285019258|ref|YP_003376969.1| cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas
           albilineans GPE PC73]
 gi|283474476|emb|CBA16977.1| probable cyclopropane-fatty-acyl-phospholipid synthase protein
           [Xanthomonas albilineans]
          Length = 442

 Score = 39.4 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           L++I           VIEIG G G            +V      ++ + + +    ++  
Sbjct: 199 LQRICAKLDLQPHHHVIEIGTGWGGFALHAAKHHGCRVTTTTISREQYALARQRVEAAGL 258

Query: 94  PNRLEIIQDDALKVD 108
            +R+E++  D   +D
Sbjct: 259 SDRVEVLLRDYRDLD 273


>gi|19115382|ref|NP_594470.1| trans-aconitate 3-methyltransferase (predicted)
          [Schizosaccharomyces pombe 972h-]
 gi|74698443|sp|Q9UTA8|YL8A_SCHPO RecName: Full=Uncharacterized methyltransferase-like C25B8.10
 gi|6469297|emb|CAB61776.1| trans-aconitate 3-methyltransferase (predicted)
          [Schizosaccharomyces pombe]
          Length = 256

 Score = 39.4 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 26/63 (41%)

Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           I   I +     +   ++E+GAG G  T  ++    +++I ++   +   +L+      
Sbjct: 27 GITDWITDEFLIDETSIILELGAGTGKFTPRIIASHPKEIIAVDVYPEMLDVLRKKFPNV 86

Query: 94 PNR 96
            R
Sbjct: 87 DCR 89


>gi|21229513|ref|NP_635430.1| phospholipid N-methyltransferase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766387|ref|YP_241149.1| phospholipid N-methyltransferase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21110977|gb|AAM39354.1| phospholipid N-methyltransferase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571719|gb|AAY47129.1| phospholipid N-methyltransferase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 192

 Score = 39.4 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
              V+E+G G G  T+ +L  G ++  ++++E +  F  +LK        R  ++Q D  
Sbjct: 42  TERVLELGPGTGVFTEAMLDRGVQENNLVLLEYNAAFSALLKQRFP----RANLLQMDVT 97

Query: 106 KVDFEKFFNISSPIRIIANL 125
            ++     +      +I  L
Sbjct: 98  GLEALPRIDGGRVDAVICGL 117


>gi|115474003|ref|NP_001060600.1| Os07g0671700 [Oryza sativa Japonica Group]
 gi|75327184|sp|Q7XI75|CARM1_ORYSJ RecName: Full=Probable histone-arginine methyltransferase CARM1;
           AltName: Full=Protein arginine N-methyltransferase 4
 gi|152013377|sp|A2YPT7|CARM1_ORYSI RecName: Full=Probable histone-arginine methyltransferase CARM1;
           AltName: Full=Protein arginine N-methyltransferase 4
 gi|33146849|dbj|BAC79844.1| putative protein arginine N-methyltransferase 4 [Oryza sativa
           Japonica Group]
 gi|113612136|dbj|BAF22514.1| Os07g0671700 [Oryza sativa Japonica Group]
 gi|215686958|dbj|BAG89761.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218200237|gb|EEC82664.1| hypothetical protein OsI_27289 [Oryza sativa Indica Group]
 gi|222637662|gb|EEE67794.1| hypothetical protein OsJ_25531 [Oryza sativa Japonica Group]
          Length = 528

 Score = 39.4 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 24  YMGQNFLLDLNILKKIAE-----SS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           Y GQ  L   N+L+         ++        +G  V+++GAG G L+      GAR V
Sbjct: 159 YYGQ-LLHQQNMLQDFVRTGTYYAAVMENRSDFEGRVVVDVGAGSGILSLFAAQAGARHV 217

Query: 74  IVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNI 115
             +E   +     + + S +P+   R+ +I+    +V+  +  +I
Sbjct: 218 YAVEA-SEMAEHAQRLISGNPSLGQRITVIKGKVEEVELPEKADI 261


>gi|300854409|ref|YP_003779393.1| putative O-methyltransferase [Clostridium ljungdahlii DSM 13528]
 gi|300434524|gb|ADK14291.1| predicted O-methyltransferase [Clostridium ljungdahlii DSM 13528]
          Length = 215

 Score = 39.4 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 51  VIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALK 106
           ++E+G   G   +   L +     +  +E+D+    I ++   ++     ++II+ D L+
Sbjct: 59  ILELGTAIGYSAILMSLSSHKKSHITTVERDKHMIEIARENVKKYKFEQHIDIIEGDCLE 118

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           V                   YN         ++ +
Sbjct: 119 VLKTMQEQYDFIFMDAGKAHYNHFLPYCLKLLNEE 153


>gi|261251611|ref|ZP_05944185.1| methyltransferase [Vibrio orientalis CIP 102891]
 gi|260938484|gb|EEX94472.1| methyltransferase [Vibrio orientalis CIP 102891]
          Length = 359

 Score = 39.4 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDF 109
           +EIG G G  T++L T     +  I+ DQ     L +   +    +R+  +  D  K+ F
Sbjct: 157 LEIGCGQGIATKLLATHTDAHITAIDNDQPALNFLDNTLQRMGLSDRVTAVCADMGKLPF 216

Query: 110 EK 111
            +
Sbjct: 217 PQ 218


>gi|239917628|ref|YP_002957186.1| trans-aconitate methyltransferase [Micrococcus luteus NCTC 2665]
 gi|281413881|ref|ZP_06245623.1| trans-aconitate methyltransferase [Micrococcus luteus NCTC 2665]
 gi|239838835|gb|ACS30632.1| trans-aconitate methyltransferase [Micrococcus luteus NCTC 2665]
          Length = 307

 Score = 39.4 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQ--HPNR 96
             + G      V+++G GPG LT+ L       +VI ++         ++ +++   P  
Sbjct: 53  VRAEGPR---VVVDLGCGPGTLTRTLAERWPEAEVIGLDDSPAMLERAREQAARTGTPAN 109

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           L     DA +    +  ++     ++  +P +   RL+  W+       ++
Sbjct: 110 LRFEAVDASQWRPSRATDVVVSNAMLQWIPTHR--RLIRRWLGDLAPGAWF 158


>gi|6631118|gb|AAF19662.1| putative methyltransferase [Bradyrhizobium japonicum]
          Length = 391

 Score = 39.4 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
              +G TVI+IGAG G  T +L  L     +V   E DQ+   + ++      N  +I  
Sbjct: 277 AVKEGETVIQIGAGSGYYTAILAHLVGPGGRVHAYEIDQRLAGLARE------NLRDIAH 330

Query: 102 DDA 104
            D 
Sbjct: 331 ADV 333


>gi|307704613|ref|ZP_07641515.1| methyltransferase domain protein [Streptococcus mitis SK597]
 gi|307621815|gb|EFO00850.1| methyltransferase domain protein [Streptococcus mitis SK597]
          Length = 193

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           + +H +  + +              FL D  +  KK+ +              G TV+++
Sbjct: 8   DAAHDIHELRVELLGEKMT------FLTDAGVFSKKMIDFGSQLLLKCLEVNQGETVLDV 61

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L      +  +++ + +   + +  + ++     I Q +  +     F  
Sbjct: 62  GCGYGPLGLSLAKAYGVQATMVDINNRALDLARQNAERNKVEATIFQSNIYEQVEGTF-- 119

Query: 115 ISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQK 156
                 +I+N P   G +++   I  +  +      LT++ QK
Sbjct: 120 ----DHVISNPPIRAGKQVVHEIIEKSKDFLETGGDLTIVIQK 158


>gi|295402781|ref|ZP_06812719.1| Methyltransferase type 11 [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294975182|gb|EFG50822.1| Methyltransferase type 11 [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 186

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 20  IPKKYMGQNFLLDLN---IL--KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             KK      LLD     I+  ++  E         ++++GAG G  T  +      KV 
Sbjct: 10  KAKK------LLDPKRKEIIAPERAIEILQIGTQDVIVDLGAGNGYFTVPMAKKTKEKVY 63

Query: 75  VIEKDQQFFPILKDISSQHP-NRLEIIQDDA 104
            ++  Q+    LK  + +   + +E I +D 
Sbjct: 64  AVDVQQEMLEFLKTHAEKEQVDNIEYILEDV 94


>gi|182438654|ref|YP_001826373.1| putative O-methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467170|dbj|BAG21690.1| putative O-methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 331

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++  + ++ G  DG TV+EIG GPG    +L    G   V  ++ D +     +   +
Sbjct: 103 PSLMALMLDALGLRDGHTVLEIGTGPGYNAALLAHRLGDSAVTSVDLDPEITESARGHLA 162

Query: 92  QHPNRLEIIQDD 103
                  ++  D
Sbjct: 163 AAGYHPTVVTGD 174


>gi|167770333|ref|ZP_02442386.1| hypothetical protein ANACOL_01676 [Anaerotruncus colihominis DSM
           17241]
 gi|167667655|gb|EDS11785.1| hypothetical protein ANACOL_01676 [Anaerotruncus colihominis DSM
           17241]
          Length = 195

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D   L  +   +    G  V++I  G G L   LL+     V+ ++         +   
Sbjct: 24  HDRYKLAAVVTLARVTPGARVLDIACGTGVLFDELLSRNPASVLGVDLSPNMIA--QAQQ 81

Query: 91  SQHPNRLEIIQDDALKVDFEKF 112
                RL+ +  D   V+   F
Sbjct: 82  KHRDPRLQTLAADLFDVEETGF 103


>gi|77747638|ref|NP_778511.2| hypothetical protein PD0274 [Xylella fastidiosa Temecula1]
 gi|182680832|ref|YP_001828992.1| methyltransferase [Xylella fastidiosa M23]
 gi|182630942|gb|ACB91718.1| methyltransferase [Xylella fastidiosa M23]
 gi|307579300|gb|ADN63269.1| methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 208

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L G  V+++ AG G L    ++ GA + +++E+  +   +L++  ++    +++EI+Q 
Sbjct: 55  VLPGAHVLDLFAGSGALGLEAVSRGAARAVLVERHAELVVLLREQVARLGAQDQVEIVQA 114

Query: 103 DALKV 107
           DAL+ 
Sbjct: 115 DALQW 119


>gi|73670205|ref|YP_306220.1| methyltransferase [Methanosarcina barkeri str. Fusaro]
 gi|72397367|gb|AAZ71640.1| methyltransferase [Methanosarcina barkeri str. Fusaro]
          Length = 278

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D   ++K   S        V++IG+GPG L+ +L++  A  V  +E  ++   IL+D   
Sbjct: 49  DKGRIQKTMNSLPITSKSRVLDIGSGPGVLS-ILISKKAAHVTAVEPSREMMGILQDNIK 107

Query: 92  QHP 94
           +  
Sbjct: 108 KFD 110


>gi|331005705|ref|ZP_08329069.1| Methyltransferase type 11 [gamma proteobacterium IMCC1989]
 gi|330420497|gb|EGG94799.1| Methyltransferase type 11 [gamma proteobacterium IMCC1989]
          Length = 219

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKD 88
           L+  I  K  E+  +  G +++E+G G G L+  LL +  +      +E           
Sbjct: 31  LNQFISNKTIEALSAKQGESIVEVGPGNGFLSIPLLDVLGKDGYYFGVEMSDLMAAEASR 90

Query: 89  ISSQHPNRLEIIQD 102
           I S     +EI+  
Sbjct: 91  ILSDKSCTVEILNG 104


>gi|296536355|ref|ZP_06898462.1| phosphatidylethanolamine N-methyltransferase [Roseomonas cervicalis
           ATCC 49957]
 gi|296263331|gb|EFH09849.1| phosphatidylethanolamine N-methyltransferase [Roseomonas cervicalis
           ATCC 49957]
          Length = 243

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           ++   +   L G  V+E+G G G    +      ++V+ I+  ++     ++   Q   R
Sbjct: 54  RRAVAAVNRLPGTRVLEVGVGTG--LALPRYRTEKRVVGIDLSREMLLKAEERVRQ--ER 109

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           L  ++   L++D E+         I   +            +  
Sbjct: 110 LAHVEG-LLEMDAEQMAFQDGAFDIAVAMFTASVVPDARKLLGE 152


>gi|251795496|ref|YP_003010227.1| biotin biosynthesis protein BioC [Paenibacillus sp. JDR-2]
 gi|247543122|gb|ACT00141.1| biotin biosynthesis protein BioC [Paenibacillus sp. JDR-2]
          Length = 276

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 15/160 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS- 90
            +I+++   S G      ++EIG G G  T++LL       +  ++         +    
Sbjct: 36  KSIIER--NSRGKATEPKILEIGCGTGQFTELLLNQWPHVSITALDLAPAMIHTAEQRFK 93

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL-----LFNWISAD---T 142
           S+    +  +Q D  ++   +  + S  + +       +         L  ++       
Sbjct: 94  SRQSANIRFLQADV-EIWAVEAPSDSFDLIVSNACFQWLSHPRQTISHLKRFLREGGSLV 152

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT--GW 180
           +  F  +  L   +   E   A    P    LSVL+   W
Sbjct: 153 FTTFGPNTFLELHQAFAEVYHAYGMEPQRHGLSVLSTNQW 192


>gi|110833630|ref|YP_692489.1| cyclopropane-fatty-acyl-phospholipid synthase [Alcanivorax
           borkumensis SK2]
 gi|110646741|emb|CAL16217.1| cyclopropane-fatty-acyl-phospholipid synthase [Alcanivorax
           borkumensis SK2]
          Length = 422

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L  I +      G+TV+EIG G G L           V      ++     +D+ +    
Sbjct: 186 LDLICQRLQLQPGMTVLEIGTGWGGLALHAAQHYGVTVTTTTISREQARYARDLVADAGL 245

Query: 94  PNRLEIIQDD 103
            +R+ I++ D
Sbjct: 246 SDRITILEKD 255


>gi|33601995|ref|NP_889555.1| protein-L-isoaspartate O-methyltransferase [Bordetella
           bronchiseptica RB50]
 gi|33576433|emb|CAE33511.1| protein-L-isoaspartate O-methyltransferase [Bordetella
           bronchiseptica RB50]
          Length = 229

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQ 92
           + + IA          V+E+GAG G    +L  +  R+V  IE+ +  + + +    + +
Sbjct: 82  VARMIAAVCEDRAPARVLEVGAGCGYQAAVLAQI-VREVHAIERIRGLYELARGHLRALR 140

Query: 93  HPNRLEIIQDDAL 105
              R+ +I  D +
Sbjct: 141 LATRVRLIHGDGM 153


>gi|94311751|ref|YP_584961.1| methyltransferase small [Cupriavidus metallidurans CH34]
 gi|93355603|gb|ABF09692.1| methylase of polypeptide chain release factors [Cupriavidus
           metallidurans CH34]
          Length = 379

 Score = 39.4 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRL 97
                   G    +IG G G L  +L   G ++V+  ++D +     +    +      +
Sbjct: 193 VAKEPLPSGTLAFDIGTGTGVLAALLAQRGVKRVVGTDQDARALGNARANIERLGLTGDV 252

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           EII+ D         F       ++ N P+
Sbjct: 253 EIIEAD--------LFPEGRAPLVVCNPPW 274


>gi|299144496|ref|ZP_07037575.1| methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517584|gb|EFI41324.1| methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 240

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 32  DLNILKKIAE---SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           D NI+    E      +     V+E+G G GNLT+++       V  I+  +    + + 
Sbjct: 18  DYNIVSSFIEDILKIENKKVKHVLELGCGTGNLTELICDK--YSVDAIDLSEDMLSVAEQ 75

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNI 115
                   + + + D   +D E  +++
Sbjct: 76  KLRNK--NVRLFKQDMKNLDIEDKYDL 100


>gi|229012760|ref|ZP_04169930.1| Methyltransferase type 11 [Bacillus mycoides DSM 2048]
 gi|228748595|gb|EEL98450.1| Methyltransferase type 11 [Bacillus mycoides DSM 2048]
          Length = 239

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G +V+EIG G G     +      KV  +EK++      KD      
Sbjct: 25  LTKQLLSQLPLRHGASVLEIGCGTGKTAAYMTKELGYKVTAVEKNEIMIQKAKDRWLFDG 84

Query: 95  NRLEIIQDDA 104
             +++IQ D 
Sbjct: 85  LNIQLIQGDV 94


>gi|114326807|ref|YP_743964.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
 gi|114314981|gb|ABI61041.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
          Length = 219

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L+ IAE         V++IG G G L + L+         IE D      + + +    +
Sbjct: 25  LRLIAEMIEPRS--RVLDIGCGDGALIEHLMRTRGCDARGIEID------MAEATRAVAH 76

Query: 96  RLEIIQDDA 104
            L ++  DA
Sbjct: 77  GLSVMHGDA 85


>gi|81428745|ref|YP_395745.1| putative protoporphyrinogen oxidase, HemK [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610387|emb|CAI55437.1| Putative protoporphyrinogen oxidase, HemK [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 289

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 51  VIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           V+++G G G +   L       +V  ++       + +  +     +++ I+ D L    
Sbjct: 118 VLDVGTGSGAIAITLACERPDWQVSAVDISPAAIAVAQQNAQTLGAKVDFIEGDFLTPVM 177

Query: 110 EKFFNISSPIRIIANLPY 127
            + F++     I++N PY
Sbjct: 178 GQQFDV-----IVSNPPY 190


>gi|51894359|ref|YP_077050.1| putative site-specific modification DNA-methyltransferase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51858048|dbj|BAD42206.1| putative site-specific modification DNA-methyltransferase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 538

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           +   +    G  ++E   G G     L   LG  +V   E D+  +  + D      +R 
Sbjct: 30  MVRWAVRSPGDLILEPCFGAGAFLGPLSEALGPERVYGAEIDEAAYRRVLDRRLLWTDRA 89

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            +   D L+ D  K     +   ++ N PY
Sbjct: 90  YL--GDFLRADPGKPPFPRAFTAVVGNPPY 117


>gi|71901153|ref|ZP_00683258.1| Conserved hypothetical protein 95 [Xylella fastidiosa Ann-1]
 gi|71729075|gb|EAO31201.1| Conserved hypothetical protein 95 [Xylella fastidiosa Ann-1]
          Length = 208

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L G  V+++ AG G L    ++ GA + +++E+  +   +L++  ++    +++EI+Q 
Sbjct: 55  VLPGAHVLDLFAGSGALGLEAVSRGAARAVLVERHAELVVLLREQVARLGAQDQVEIVQA 114

Query: 103 DALKV 107
           DAL+ 
Sbjct: 115 DALQW 119


>gi|329925197|ref|ZP_08280140.1| methyltransferase domain protein [Paenibacillus sp. HGF5]
 gi|328940030|gb|EGG36363.1| methyltransferase domain protein [Paenibacillus sp. HGF5]
          Length = 254

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE      G  ++++G G G+LT  +   GA  V  ++   +     K      P     
Sbjct: 26  AELLAPQPGERILDLGCGTGDLTHEISKSGAH-VTGMDYSSEMIERAKSKYPGLP----- 79

Query: 100 IQDDALKVDFEKFFNISSPIRIIANL 125
                L  D E F   +    + +N 
Sbjct: 80  ----FLAGDGENFETETPYDAVFSNA 101


>gi|317050516|ref|YP_004111632.1| type 11 methyltransferase [Desulfurispirillum indicum S5]
 gi|316945600|gb|ADU65076.1| Methyltransferase type 11 [Desulfurispirillum indicum S5]
          Length = 190

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 15/123 (12%)

Query: 36  LKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            ++I +S G       ++E G+G G  T     L    V  ++ +      +K+  ++  
Sbjct: 20  AERILQSLGLNKDTQDIVEFGSGYGTFTLAAAALIHGTVYALDIEPSMVQRVKEKCARSN 79

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
              + +   D +             +      P ++   LLFN +  +         +  
Sbjct: 80  IANVHVQVRDFI-------------VEGTGLPPGSMDVALLFNILHHEQPLTLLREASSA 126

Query: 154 FQK 156
             +
Sbjct: 127 LVR 129


>gi|255282303|ref|ZP_05346858.1| UbiE/COQ5 methyltransferase [Bryantella formatexigens DSM 14469]
 gi|255267251|gb|EET60456.1| UbiE/COQ5 methyltransferase [Bryantella formatexigens DSM 14469]
          Length = 243

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--------PNR 96
                 ++E+G G G  T  LL  G  KVI ++K+ +     K +  Q            
Sbjct: 31  IEKYDIILEVGCGTGYSTLALLENG-HKVIALDKNNECIEKAKKLLQQKGYSIGAMPDAD 89

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           +  I++D   V  E +  + S ++  A + +N+G+
Sbjct: 90  VCFIENDV--VTREFYSEVLSDLQFDAVICWNVGS 122


>gi|229582884|ref|YP_002841283.1| methyltransferase FkbM family [Sulfolobus islandicus Y.N.15.51]
 gi|228013600|gb|ACP49361.1| methyltransferase FkbM family [Sulfolobus islandicus Y.N.15.51]
          Length = 244

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 19/121 (15%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G  V++IGAG G+        GA++V+ +E D++   +++               D LK
Sbjct: 102 KGKRVLDIGAGIGDSPIYFSIAGAKEVVAVEIDKRKVELMR---------------DNLK 146

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS----ADTWPPFWESLTLLFQKEVGERI 162
           V+      +      + +    I    L +       A       E +   + KE+ E +
Sbjct: 147 VNRIDNVTVVDKGVGVEDSNNIISWPKLVSLYGPFDVAKIDCDGCERIIAPYIKEISELL 206

Query: 163 T 163
            
Sbjct: 207 I 207


>gi|170725256|ref|YP_001759282.1| methyltransferase small [Shewanella woodyi ATCC 51908]
 gi|262828737|sp|B1KF36|TRMN6_SHEWM RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|169810603|gb|ACA85187.1| methyltransferase small [Shewanella woodyi ATCC 51908]
          Length = 243

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEII 100
           +       +++IGAG G L+ M       ++  +E D   F       I+S+  +RL ++
Sbjct: 30  APLSKAENLLDIGAGSGLLSLMAAQRSEAQITAVELDDTAFHACNKNFIASKWQSRLNLV 89

Query: 101 QDDALKV-DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
                +  +     N +    II N PY  G     N + A       +SLT     EV 
Sbjct: 90  YASVQEFCNQHTDGNNAQFDHIICNPPYFKGGTQSSNRLRAQA--RHTDSLTFHALLEVI 147

Query: 160 ERITAQKNS 168
            ++ A   +
Sbjct: 148 TKLLAATGT 156


>gi|29376498|ref|NP_815652.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           V583]
 gi|38605218|sp|Q820A9|PRMA_ENTFA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|29343962|gb|AAO81722.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           V583]
          Length = 315

 Score = 39.4 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      K+    +P    + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|311897691|dbj|BAJ30099.1| putative methyltransferase [Kitasatospora setae KM-6054]
          Length = 392

 Score = 39.4 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 41  ESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                  G TV+E+G G G N   +    G   V+ +E D       +    +      +
Sbjct: 111 RDLDVRPGDTVLEVGTGTGWNAGLLAHRQGDANVVTVEYDPNVSRGARSNLDRAGLEPTV 170

Query: 100 IQDD 103
           I+ D
Sbjct: 171 IEGD 174


>gi|315231215|ref|YP_004071651.1| UbiE/COQ5-like methyltransferase [Thermococcus barophilus MP]
 gi|315184243|gb|ADT84428.1| UbiE/COQ5-like methyltransferase [Thermococcus barophilus MP]
          Length = 247

 Score = 39.4 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  ++++G G G  +  L   G R V  I+  Q      +  + +    +E I+ DA
Sbjct: 39  LPKGAKILDVGCGVGRHSIELAKRGYR-VTGIDISQGMLEEARKRAQKEGVEVEFIKADA 97

Query: 105 LKVDFEKFFN 114
            K   E+ F+
Sbjct: 98  TKFKCEEEFD 107


>gi|9105911|gb|AAF83789.1|AE003936_3 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 200

 Score = 39.4 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L G  V+++ AG G L    ++ GA + +++E+  +    L++  ++    +++EI+Q 
Sbjct: 47  VLPGAHVLDLFAGSGALGLEAVSRGAARAVLVERHAELVVRLREQVARLGAQDQVEIVQA 106

Query: 103 DALKV 107
           DAL+ 
Sbjct: 107 DALQW 111


>gi|24663238|ref|NP_729798.1| CG4300, isoform A [Drosophila melanogaster]
 gi|7294596|gb|AAF49935.1| CG4300, isoform A [Drosophila melanogaster]
 gi|25010043|gb|AAN71187.1| GH19412p [Drosophila melanogaster]
 gi|220950684|gb|ACL87885.1| CG4300-PA [synthetic construct]
          Length = 367

 Score = 39.4 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 19/107 (17%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDL--NILKK--------IAESSGSLDGITVIEIGAGPGN 60
           ++     +I+  K +G   LLD   NI +         +     + +G  +  +G G G 
Sbjct: 149 RSPFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICILGGGDGA 208

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
           L   LL    + V+++E D        ++  Q  N+ L +I  D L+
Sbjct: 209 LLYELLKENPKHVVMLEID--------ELVMQTCNKYLNVICGDVLE 247


>gi|289643898|ref|ZP_06476002.1| tRNA (adenine-N(1)-)-methyltransferase [Frankia symbiont of Datisca
           glomerata]
 gi|289506284|gb|EFD27279.1| tRNA (adenine-N(1)-)-methyltransferase [Frankia symbiont of Datisca
           glomerata]
          Length = 305

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILK---DIS 90
             +I   +    G  V+E G G G L+  LL     +  V+  E+   F  I +   +  
Sbjct: 97  AAQIVTYADVFPGARVLEAGVGSGALSCSLLRAVGDQGLVVSYERRADFAEIARRNVETF 156

Query: 91  SQHPNRLEIIQ-DD 103
              P+   ++   D
Sbjct: 157 FGGPHPAHVLHVGD 170


>gi|289581810|ref|YP_003480276.1| protein-L-isoaspartate O-methyltransferase [Natrialba magadii ATCC
           43099]
 gi|289531363|gb|ADD05714.1| protein-L-isoaspartate O-methyltransferase [Natrialba magadii ATCC
           43099]
          Length = 221

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +++  +A+      G  V+EIG G G    +T  +  +G   V  +E       + ++ 
Sbjct: 75  PHMVAIMADRLALEPGDEVLEIGTGCGYHAAVTAEI--VGPEHVYTVEYSADLAELARET 132

Query: 90  SSQH-PNRLEIIQDD 103
            +      + +   D
Sbjct: 133 LAALGYGEVSVRTGD 147


>gi|222479812|ref|YP_002566049.1| Methyltransferase type 12 [Halorubrum lacusprofundi ATCC 49239]
 gi|222452714|gb|ACM56979.1| Methyltransferase type 12 [Halorubrum lacusprofundi ATCC 49239]
          Length = 246

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK--DISSQHPNRLEIIQ 101
           G+  G  V++ G G G L   L   GA  V   E D +F  + +   +++   +R+E+  
Sbjct: 84  GASGGDRVLDAGTGSGILAAYLGRAGAD-VTSYEIDSEFAEVARGNMVTAGVADRVEVRT 142

Query: 102 DDALKVDFEKFFNISS 117
            D L  + +   +   
Sbjct: 143 GD-LTEELDALADEDP 157


>gi|157364173|ref|YP_001470940.1| methyltransferase type 11 [Thermotoga lettingae TMO]
 gi|157314777|gb|ABV33876.1| Methyltransferase type 11 [Thermotoga lettingae TMO]
          Length = 249

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  I +      G  ++++G G G  +  L   G   V  I+  ++   I +    +   
Sbjct: 30  IDFIEQELNIPAGSFILDVGCGTGRHSIELAKRG-YSVTGIDISERMLSIARKKCEKESV 88

Query: 96  RLEIIQDDALKVDFEKFFNIS 116
            ++ IQ +A+     K ++  
Sbjct: 89  SVDFIQANAVDFKVNKLYDAC 109


>gi|886320|gb|AAB53136.1| glucose-inhibited division protein B [Mycobacterium leprae]
          Length = 252

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPIL 86
           N L D ++L     +     G  V++IG+G G     L       +V+++E   +    L
Sbjct: 63  NRLWDRHLLNSAVVAELLDPGDRVVDIGSGAGLPGLPLAIARPDLQVVLLEPLLRRVTFL 122

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
           +++ ++    +E+++  A ++          
Sbjct: 123 REVVAELGLDVEVVRGRAEELWVRDRIGERD 153


>gi|73668710|ref|YP_304725.1| ribosomal RNA adenine dimethylase [Methanosarcina barkeri str.
           Fusaro]
 gi|72395872|gb|AAZ70145.1| ribosomal RNA adenine dimethylase [Methanosarcina barkeri str.
           Fusaro]
          Length = 274

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-KDQQFFPIL 86
           NF    +++++            V++IG+GPG LT  L  +  + V  +E  D   + + 
Sbjct: 47  NF--SKSLIQR----LDFTTDSKVLDIGSGPGTLTIPLAGM-VKHVTAVEPSDGMLYCLK 99

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           ++I +   N +  IQ    K +     ++ +P  ++
Sbjct: 100 ENIKAMGLNNVSWIQK---KWEDVDIKDLDAPYDVV 132


>gi|21230783|ref|NP_636700.1| hypothetical protein XCC1326 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769219|ref|YP_243981.1| hypothetical protein XC_2913 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992366|ref|YP_001904376.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21112382|gb|AAM40624.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574551|gb|AAY49961.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734126|emb|CAP52332.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas
           campestris pv. campestris]
          Length = 356

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +        I    + +     IL+    +  + +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERYPNASITAVSNSRPQRAHILEQCRVRGLSNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQK 156
             D  AL +  + F  + S         Y      + +W++     +   +    L +  
Sbjct: 186 TADVNALALPTDSFDRVVSVEMFEHMRNYRELLSRIGSWLAPGGKLFVHIFCHRDLAYPF 245

Query: 157 EVG 159
           EV 
Sbjct: 246 EVA 248


>gi|116619757|ref|YP_821913.1| FkbM family methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222919|gb|ABJ81628.1| methyltransferase FkbM family [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 595

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            L+G TV+++G GPG+L+      G R V+ ++   +    L+ +       +  +Q D 
Sbjct: 177 PLEGKTVLDVGCGPGHLSVFFAERGCR-VVCVDARPENIERLRSLYPDREAVVANVQIDP 235

Query: 105 L--------KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           L           +   +++  PI ++ N+       LL   + +D   P  + +
Sbjct: 236 LVKLGIFDVVFCYGLLYHVEDPIAVLRNISACCSELLLLETVISDHDKPIVQLV 289


>gi|260752706|ref|YP_003225599.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552069|gb|ACV75015.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 332

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 33/78 (42%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ E+   ++G   I+   G G  ++ +L     +VI  ++D         +  +
Sbjct: 12  PVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGAALVEK 71

Query: 93  HPNRLEIIQDDALKVDFE 110
           +  RL ++ D    +D  
Sbjct: 72  YKGRLRLVNDCFSNIDHH 89


>gi|225027593|ref|ZP_03716785.1| hypothetical protein EUBHAL_01850 [Eubacterium hallii DSM 3353]
 gi|224955109|gb|EEG36318.1| hypothetical protein EUBHAL_01850 [Eubacterium hallii DSM 3353]
          Length = 322

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                 ++++G G G L+ + L LGA   +  + D        +  + +    + E+ Q 
Sbjct: 172 IKKDTELLDVGTGSGILSIIGLKLGAHHAMATDIDPNAIRATDENFAINGVAGQAEVQQV 231

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           + L  D    F   +  +    +  NI   ++   
Sbjct: 232 NILDQDEAYRFYEKNNGKRYDVVVANILADVIIPL 266


>gi|297196307|ref|ZP_06913705.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197722884|gb|EDY66792.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 221

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQD 102
              G  V+++G G G L       GAR   V   D+ +  ++    +      R+ ++  
Sbjct: 33  LKPGAEVLDVGTGTGALALTAARRGARVTAV---DRSWRAVVATRLNAVLARRRVRVLHG 89

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D L     + F++     I+ N PY
Sbjct: 90  DLLDPAMGRRFDL-----IVCNPPY 109


>gi|254390947|ref|ZP_05006157.1| methyltransferase type 12 [Streptomyces clavuligerus ATCC 27064]
 gi|294816552|ref|ZP_06775194.1| Putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326445472|ref|ZP_08220206.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197704644|gb|EDY50456.1| methyltransferase type 12 [Streptomyces clavuligerus ATCC 27064]
 gi|294321367|gb|EFG03502.1| Putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 285

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 42  SSGS-LDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           ++G       V+E+ AG G LT+++L    +  V   + D +F   L+       +RL +
Sbjct: 56  AAGPARPVRRVLELAAGAGTLTRLVLDRLPSAHVTTTDLDPRFLADLRH------DRLTV 109

Query: 100 IQDDALKVDFEK 111
           ++ D  + +  +
Sbjct: 110 LRHDVTRDELPE 121


>gi|254384050|ref|ZP_04999396.1| toxA protein [Streptomyces sp. Mg1]
 gi|194342941|gb|EDX23907.1| toxA protein [Streptomyces sp. Mg1]
          Length = 352

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 36/75 (48%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +  G L G  V+++  G G+ T+++ + GA +V+ ++       + ++   + P  +   
Sbjct: 34  KHLGDLTGARVLDLACGHGHYTRLIKSAGAAEVVGVDLSPVMVELARETEQKDPQGITYH 93

Query: 101 QDDALKVDFEKFFNI 115
             DA+ +     F++
Sbjct: 94  AADAVNLPRLGEFDL 108


>gi|170758210|ref|YP_001786324.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum A3 str. Loch Maree]
 gi|169405199|gb|ACA53610.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Clostridium botulinum A3 str. Loch Maree]
          Length = 191

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS 90
           D+ IL          +   V+++GAG G+++     +  + +V  IEKD++   I+K   
Sbjct: 20  DIRILS--ISKMNLEENSKVLDVGAGTGSVSIQAAKICKKGRVFAIEKDEEALDIIKKNK 77

Query: 91  SQHP-NRLEIIQDDALKVD 108
            +     ++II+ +AL+++
Sbjct: 78  DKFNCENVKIIEGEALELE 96


>gi|188989436|ref|YP_001901446.1| methyltransferase [Xanthomonas campestris pv. campestris str. B100]
 gi|167731196|emb|CAP49368.1| methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 192

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
              V+E+G G G  T+ +L  G ++  ++++E +  F  +LK        R  ++Q D  
Sbjct: 42  TERVLELGPGTGVFTEAMLDRGVQENNLVLLEYNAAFSALLKQRFP----RANLLQMDVT 97

Query: 106 KVDFEKFFNISSPIRIIANL 125
            ++     +      +I  L
Sbjct: 98  GLEALPRIDGGRVDAVICGL 117


>gi|118445038|ref|YP_879045.1| precorrin-6B methylase/decarboxylase cbiT/cbiE [Clostridium novyi
           NT]
 gi|118135494|gb|ABK62538.1| precorrin-6B methylase/decarboxylase cbiT/cbiE [Clostridium novyi
           NT]
          Length = 192

 Score = 39.4 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 38  KI--AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH- 93
           +I      G  +  TV+++GAG G+++  L  +  + +VI +EK+++   ++     +  
Sbjct: 22  RILSISKMGVDENSTVLDVGAGTGSISIQLSKICNKGEVIAVEKEEKAVKLINKNKEKFS 81

Query: 94  PNRLEIIQDDALKV 107
            + L+II+ +AL+V
Sbjct: 82  AHNLKIIKGEALEV 95


>gi|322825513|gb|EFZ30448.1| hypothetical protein TCSYLVIO_3259 [Trypanosoma cruzi]
          Length = 419

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                  V+EIGAG G L+ M   LGA+ V+ +E   +   + +  ++   N++E  +  
Sbjct: 102 HVTPETGVLEIGAGSGLLSLMAAQLGAKWVVAVEGSAEMAKLAR--ANICANKME-HKVT 158

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
            L +   +      P R     P  + + +L   +  ++   +   +     K   + I
Sbjct: 159 VLHMLSTELTLRHLPDR-----PDVMVSEILGTLLLGESALDYIADVRERLLKPTTKII 212


>gi|288931001|ref|YP_003435061.1| methyltransferase type 11 [Ferroglobus placidus DSM 10642]
 gi|288893249|gb|ADC64786.1| Methyltransferase type 11 [Ferroglobus placidus DSM 10642]
          Length = 205

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEK 78
          KK+ + +    G  V+E+G G G  T+ ++   G   V+ ++ 
Sbjct: 35 KKVVDLAEIGQGDLVLEVGCGTGFTTEEIVARVGEENVVAVDI 77


>gi|302381769|ref|YP_003817592.1| methyltransferase small [Brevundimonas subvibrioides ATCC 15264]
 gi|302192397|gb|ADK99968.1| methyltransferase small [Brevundimonas subvibrioides ATCC 15264]
          Length = 248

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ- 92
            +L  IA+ +        ++IGAG G ++  +       V  IE+D     +++  +++ 
Sbjct: 23  RVLAMIAQ-ADLAPDAVALDIGAGAGGVSVAMARTHGLTVHAIERDPAMAAMIRARAAEP 81

Query: 93  -HPNRLEIIQDD 103
              +RL+++ +D
Sbjct: 82  GLEDRLQVVCED 93


>gi|220933670|ref|YP_002512569.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994980|gb|ACL71582.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 218

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ ++         +EIG G G +T  L  LGA+   V   D   +  +K +  Q
Sbjct: 63  PKVEARMLQALNVRPTDVCLEIGTGSGYVTCCLAKLGAQVDSVDIHDDFKYAAMKRLEQQ 122

Query: 93  HPNRLEIIQDDA 104
                 + Q DA
Sbjct: 123 GITNAALRQGDA 134


>gi|197116641|ref|YP_002137068.1| ribosomal protein L11 methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|226710086|sp|B5E9X4|PRMA_GEOBB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|197086001|gb|ACH37272.1| ribosomal protein L11 methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 306

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 17/97 (17%)

Query: 36  LKKIA-ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ-------------- 80
           L++I  ++SG      V+++G G G L+     LGA++++ ++ D               
Sbjct: 159 LERICFDASGGKLPSPVLDVGTGSGVLSIAAALLGAKEIVAVDIDPEAVRVTMENLELNG 218

Query: 81  --QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI 115
                        Q P    ++  + L  +  +  + 
Sbjct: 219 VADLVAASTTSLEQLPGGFRVVVANILAEELVRLADE 255


>gi|149175815|ref|ZP_01854433.1| protein-L-isoaspartate O-methyltransferase [Planctomyces maris DSM
           8797]
 gi|148845262|gb|EDL59607.1| protein-L-isoaspartate O-methyltransferase [Planctomyces maris DSM
           8797]
          Length = 229

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
              +  +  ++       V+EIG G G     +L+L AR+V  IE+         +   +
Sbjct: 74  PYTVAFMCAAAQLTGNEVVLEIGTGSGY-GAAVLSLLAREVHTIERIPALASQAAERLQR 132

Query: 93  H-PNRLEIIQDD 103
              + + +  +D
Sbjct: 133 LGYDNVHVYTED 144


>gi|123430373|ref|XP_001307871.1| protein arginine N-methyltransferase [Trichomonas vaginalis G3]
 gi|121889523|gb|EAX94941.1| protein arginine N-methyltransferase, putative [Trichomonas
           vaginalis G3]
          Length = 327

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHP 94
             I  + G      ++++G G G L+      GA+KV  +EK        ++I   +   
Sbjct: 39  NAILTNPGLFKDKIILDVGCGTGILSMFAAKAGAKKVYAVEK-SSIVDYAREIVNINGFG 97

Query: 95  NRLEIIQDDALKVDFEKFFNI 115
           + + I+Q    ++D  +  ++
Sbjct: 98  DVITIMQGTIEEIDLPEKVDV 118


>gi|115478763|ref|NP_001062975.1| Os09g0359800 [Oryza sativa Japonica Group]
 gi|122228135|sp|Q0J2C6|ANM1_ORYSJ RecName: Full=Probable protein arginine N-methyltransferase 1
 gi|152013348|sp|A2Z0C0|ANM1_ORYSI RecName: Full=Probable protein arginine N-methyltransferase 1
 gi|113631208|dbj|BAF24889.1| Os09g0359800 [Oryza sativa Japonica Group]
 gi|125563401|gb|EAZ08781.1| hypothetical protein OsI_31042 [Oryza sativa Indica Group]
 gi|215704683|dbj|BAG94311.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 387

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNR 96
           I ++S       V+++GAG G L+      GA+ V  IE   Q   + K+I     + N 
Sbjct: 96  ITQNSFLFKDKIVLDVGAGTGILSLFCAKAGAKHVYAIEC-SQMADMAKEIVKTNGYSNV 154

Query: 97  LEIIQD 102
           + +I+ 
Sbjct: 155 ITVIKG 160


>gi|48716647|dbj|BAD23315.1| putative protein-arginine N-methyltransferase [Oryza sativa
           Japonica Group]
          Length = 306

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNR 96
           I ++S       V+++GAG G L+      GA+ V  IE   Q   + K+I     + N 
Sbjct: 15  ITQNSFLFKDKIVLDVGAGTGILSLFCAKAGAKHVYAIEC-SQMADMAKEIVKTNGYSNV 73

Query: 97  LEIIQD 102
           + +I+ 
Sbjct: 74  ITVIKG 79


>gi|315426184|dbj|BAJ47828.1| conserved hypothetical protein [Candidatus Caldiarchaeum
           subterraneum]
          Length = 154

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--Q 92
           I++++ + +G  +G TV+++G G G +          K I  E        +++ +   +
Sbjct: 14  IVRRMLDLAGVDEGETVLDLGCGDGRILFTAAEEYGAKAIGYELRPSLVNFIREKAKLMR 73

Query: 93  HPNRLEIIQDDA 104
               + +I+ D 
Sbjct: 74  LDEMVHVIKQDF 85


>gi|206901304|ref|YP_002251108.1| protein-L-isoaspartate O-methyltransferase [Dictyoglomus
           thermophilum H-6-12]
 gi|238057822|sp|B5YF00|PIMT_DICT6 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|206740407|gb|ACI19465.1| protein-L-isoaspartate O-methyltransferase [Dictyoglomus
           thermophilum H-6-12]
          Length = 220

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
             I+  + E+        V+EIG G G  T +L  L A ++  +E+ ++     K   
Sbjct: 70  PYIVALMTEALNLQGNEKVLEIGTGSGYQTAILAEL-ALEIYTVERIKELLEEAKKRL 126


>gi|20094851|ref|NP_614698.1| SAM-dependent methyltransferase involved in tRNA-Met maturation
           [Methanopyrus kandleri AV19]
 gi|19888075|gb|AAM02628.1| Predicted SAM-dependent methyltransferase involved in tRNA-Met
           maturation [Methanopyrus kandleri AV19]
          Length = 193

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQ----FFPILKDISSQ 92
           I E  G L G  V E G G G LT  +  +     +V+ IE D +        L+ +   
Sbjct: 26  ITERLGLLPGHRVFESGVGSGFLTASMARIVYPEGEVVGIEIDTRKLEKARENLEQLGKV 85

Query: 93  HPNRLEIIQDDALKV 107
           +   + +   DA + 
Sbjct: 86  YEKSVTLKHGDAREY 100


>gi|268553797|ref|XP_002634885.1| Hypothetical protein CBG10553 [Caenorhabditis briggsae]
          Length = 251

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 18/175 (10%)

Query: 23  KYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K++G     D  I   I ++ G  L+G  V+++G G G+ +   L  GA +V+ I+   +
Sbjct: 15  KWLG----RDHLITPTIKKAIGNVLEGKKVLDVGCGNGHYSFDFLQWGADEVVGIDNSPE 70

Query: 82  FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRI---------IANLPYNIG 130
              I +D   + P  ++++  + +      +K F++++   +         +A    NI 
Sbjct: 71  MIQICQDSQKKLPESSKIDFHESNITDFSLQKHFDVATAFFVLQFLHSKSDVAKAIQNIS 130

Query: 131 TRLLFNWISADTWPPFWESLT--LLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
             L    I     P   E +        ++G +I     S  +    V   +   
Sbjct: 131 NHLKSGGILFGLIPNGIEGVNPPEDMGWKLGAQIQKTPGSHFFDGEIVGINFYAN 185


>gi|327537270|gb|EGF24008.1| ribosomal RNA adenine dimethylase domain-containing protein
           [Rhodopirellula baltica WH47]
          Length = 213

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDI 89
              ++K++ E         V+E G G G  T+ +        K   IE+  +   I +  
Sbjct: 45  SPGLVKRMVEWFDWETARGVVEFGPGTGVFTEAIQNQLHEDAKFFAIERSPELAAITRAR 104

Query: 90  SSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPY 127
             Q    + +++D A  V +  +   I     II  LP+
Sbjct: 105 CPQ----VNVVEDSAESVANLCRDNQIDQVHAIICGLPW 139


>gi|328543656|ref|YP_004303765.1| methyltransferase (Pcm-like) transmembrane protein [polymorphum
           gilvum SL003B-26A1]
 gi|326413400|gb|ADZ70463.1| Putative methyltransferase (Pcm-like) transmembrane protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 220

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +L+  ++  K+ + +       V+ +GAG G    +L  L A  V+ +E++     +  +
Sbjct: 63  YLMKPHVFAKLIQLAAVRPEDVVLVVGAGSGYSAAVLAKL-AGMVVAVEENPDLAAMASE 121

Query: 89  IS 90
           I 
Sbjct: 122 IL 123


>gi|256762905|ref|ZP_05503485.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis T3]
 gi|256684156|gb|EEU23851.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis T3]
          Length = 315

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      K+    +P    + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|227519318|ref|ZP_03949367.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0104]
 gi|227555474|ref|ZP_03985521.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           HH22]
 gi|229545441|ref|ZP_04434166.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX1322]
 gi|229549685|ref|ZP_04438410.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|255972383|ref|ZP_05422969.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis T1]
 gi|256853490|ref|ZP_05558860.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis T8]
 gi|256959289|ref|ZP_05563460.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis DS5]
 gi|256961536|ref|ZP_05565707.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           Merz96]
 gi|256964752|ref|ZP_05568923.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           HIP11704]
 gi|257084823|ref|ZP_05579184.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           Fly1]
 gi|257419656|ref|ZP_05596650.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           T11]
 gi|257422236|ref|ZP_05599226.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           X98]
 gi|293384705|ref|ZP_06630560.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           R712]
 gi|293387405|ref|ZP_06631960.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           S613]
 gi|300860295|ref|ZP_07106382.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TUSoD Ef11]
 gi|307287879|ref|ZP_07567912.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0109]
 gi|307295908|ref|ZP_07575740.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0411]
 gi|312900877|ref|ZP_07760171.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0470]
 gi|312908309|ref|ZP_07767273.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|312910617|ref|ZP_07769459.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           DAPTO 516]
 gi|227073247|gb|EEI11210.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0104]
 gi|227175396|gb|EEI56368.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           HH22]
 gi|229305165|gb|EEN71161.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|229309357|gb|EEN75344.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX1322]
 gi|255963401|gb|EET95877.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis T1]
 gi|256711949|gb|EEU26987.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis T8]
 gi|256949785|gb|EEU66417.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis DS5]
 gi|256952032|gb|EEU68664.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           Merz96]
 gi|256955248|gb|EEU71880.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           HIP11704]
 gi|256992853|gb|EEU80155.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           Fly1]
 gi|257161484|gb|EEU91444.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           T11]
 gi|257164060|gb|EEU94020.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           X98]
 gi|291078012|gb|EFE15376.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           R712]
 gi|291083196|gb|EFE20159.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           S613]
 gi|295113240|emb|CBL31877.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Enterococcus sp. 7L76]
 gi|300849334|gb|EFK77084.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TUSoD Ef11]
 gi|306496239|gb|EFM65818.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0411]
 gi|306501024|gb|EFM70331.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0109]
 gi|310625723|gb|EFQ09006.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|311289165|gb|EFQ67721.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           DAPTO 516]
 gi|311291976|gb|EFQ70532.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0470]
 gi|315028902|gb|EFT40834.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX4000]
 gi|315033293|gb|EFT45225.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0017]
 gi|315034531|gb|EFT46463.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0027]
 gi|315143406|gb|EFT87422.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX2141]
 gi|315147639|gb|EFT91655.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX4244]
 gi|315149225|gb|EFT93241.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0012]
 gi|315157275|gb|EFU01292.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0043]
 gi|315159890|gb|EFU03907.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0312]
 gi|315161372|gb|EFU05389.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0645]
 gi|315163669|gb|EFU07686.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX1302]
 gi|315167499|gb|EFU11516.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX1341]
 gi|315169385|gb|EFU13402.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX1342]
 gi|315174317|gb|EFU18334.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX1346]
 gi|315574553|gb|EFU86744.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0309B]
 gi|315581805|gb|EFU93996.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0309A]
 gi|323481111|gb|ADX80550.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis 62]
 gi|327535491|gb|AEA94325.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           OG1RF]
          Length = 315

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      K+    +P    + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|222147726|ref|YP_002548683.1| cyclopropane-fatty-acyl-phospholipid synthase [Agrobacterium vitis
           S4]
 gi|221734714|gb|ACM35677.1| cyclopropane-fatty-acyl-phospholipid synthase [Agrobacterium vitis
           S4]
          Length = 418

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + IA    +  G  V+EIG+G G +   L       V  I   ++   + ++ + +    
Sbjct: 163 RHIAAKLMAEPGQRVLEIGSGWGGMAIYLAETCGVDVSGITLSEEQLKVSRERARKRG-- 220

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                 D L+ D + + ++       A     I +  +F  +    +  ++  +  L Q 
Sbjct: 221 ----LGDRLRFDLQDYRSLK------ARPFDRIVSVGMFEHVGPTHYRHYFRKVHELMQD 270

Query: 157 EVGERI 162
           +    +
Sbjct: 271 DGVMIL 276


>gi|209549044|ref|YP_002280961.1| Cyclopropane-fatty-acyl-phospholipid synthase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534800|gb|ACI54735.1| Cyclopropane-fatty-acyl-phospholipid synthase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 419

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
           + +AE++G   G  V+EIG G G   +        KV  +   ++     ++    +   
Sbjct: 193 RALAEATGIRPGDHVLEIGCGWGGFAEFAAGELNCKVTGLTISREQLAFAEERIRKAGLG 252

Query: 95  NRLEIIQDD 103
           +R+E    D
Sbjct: 253 DRVEFRFQD 261


>gi|118096741|ref|XP_414261.2| PREDICTED: similar to HEMK homolog [Gallus gallus]
          Length = 352

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDD 103
               ++EIG G G +   LL    + +V+ ++K++    + ++     Q   R+ ++  +
Sbjct: 173 PPPVILEIGCGSGAIALSLLCKIPQSRVLAVDKEEAAVDLTRENVHRLQLQGRIHVLHHN 232

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
                 +          I++N PY
Sbjct: 233 VSYGSAKHLLPWGPMDFIVSNPPY 256


>gi|15839835|ref|NP_334872.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis CDC1551]
 gi|13879968|gb|AAK44686.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis CDC1551]
          Length = 482

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 31/224 (13%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94
           + ++ + +G   G  V+EIG G G L       GA  + + +  +QQ     +  ++   
Sbjct: 252 IDRLLDVAGVQQGSHVLEIGTGWGELCIRAAARGAHIRSVTLSVEQQRLARQRVAAAGFG 311

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +R+EI   D   VD +                 ++ +  +   +   +WP ++ +L  L 
Sbjct: 312 HRVEIDLCDYRDVDGQYD---------------SVVSVEMIEAVGYRSWPRYFAALEQLV 356

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV------TSTVIHF 208
           +      I A     H    +  T    +   +F   P    PS +         T +  
Sbjct: 357 RPGGPVAIQAITMPHHRMLATRHTQTWIQ-KYIF---PGGLLPSTQAIIDITGQHTGLRI 412

Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           +   +  P   E+L ++ +E F +RR      L  LG + +  +
Sbjct: 413 VDAASLRPHYAETL-RLWRERFMQRR----DGLAHLGFDEVFAR 451


>gi|32472210|ref|NP_865204.1| methyltransferase [Rhodopirellula baltica SH 1]
 gi|32397582|emb|CAD72888.1| conserved hypothetical protein-putative methyltransferase
           [Rhodopirellula baltica SH 1]
          Length = 246

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDI 89
              ++K++ E         V+E G G G  T+ +        K   IE+  +   I +  
Sbjct: 78  SPGLVKRMVEWFDWETARGVVEFGPGTGVFTEAIQNQLHEDAKFFAIERSPELAAITRAR 137

Query: 90  SSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPY 127
             Q    + +++D A  V +  +   I     II  LP+
Sbjct: 138 CPQ----VNVVEDSAESVANLCRDNQIDQVHAIICGLPW 172


>gi|315925354|ref|ZP_07921565.1| precorrin-8W decarboxylase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621255|gb|EFV01225.1| precorrin-8W decarboxylase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 191

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
               G      V++IGAG G LT +      A +V  +E       +++    +   + +
Sbjct: 29  IALLGIEATDVVVDIGAGTGGLTMEAAHAARAGRVYAVEAKPAAQALIRQNIERFDASNV 88

Query: 98  EIIQDDA 104
            +I+  A
Sbjct: 89  TLIEGKA 95


>gi|307298655|ref|ZP_07578458.1| ribosomal L11 methyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915820|gb|EFN46204.1| ribosomal L11 methyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 270

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             +G+ V+++G G G L+ +    GA  V+ ++ D+      K I +   N + I     
Sbjct: 132 VREGLKVLDVGCGTGILSVIAARKGAAAVVALDIDEHSIE--KTIETARINEVSI----- 184

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            +     F +   P      +  N+   LL  ++         + + +L
Sbjct: 185 -EARLSDFLSAVKPGERFDLIVSNMIAELLMKFVLDLPKFLTEDGMVIL 232


>gi|301166174|emb|CBW25749.1| spermidine synthase [Bacteriovorax marinus SJ]
          Length = 311

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 20/149 (13%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA-RKVIVIEKD-------QQFFPILKDISSQHPNRLEIIQ 101
            V+ IGAG G + + L+      ++ ++E D       ++FFP +         R++II 
Sbjct: 102 RVLVIGAGDGGVIRELVRYKCIEEITLVEIDEMVTTTSREFFPNVAKGLD--DPRVKIIF 159

Query: 102 DDALKVDFEKFFNISSPIRII---ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +DALK    +    ++   +I   +  P  +   L  +           +    + Q E 
Sbjct: 160 EDALKFIDREVLIPNNKYDLIISDSTDPVGLAENLYKSDFYQKVNSLLTDEGIFMCQTE- 218

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMM 187
                       Y   S+     ++  ++
Sbjct: 219 ------SPFYDEYDIRSIYQNLESEFKIV 241


>gi|268323009|emb|CBH36597.1| probable tRNA (adenine-N(1)-)-methyltransferase [uncultured
           archaeon]
          Length = 268

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+  L+ Y    KK   Q  ++    +  I   +    G  V+E G G G LT  LL   
Sbjct: 62  LRPTLAEYLSRMKKG-SQ--IIYPKDIGAILMLADIFPGANVLEAGTGSGALTIALLRAV 118

Query: 70  AR--KVIVIEKDQQFFPILKDISSQHPNRLEI 99
            R  KVI  E+  +F  I          ++ I
Sbjct: 119 GRDGKVISYERRNEFAAIANSNIETFFEQVGI 150


>gi|258516360|ref|YP_003192582.1| 50S ribosomal protein L11 methyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780065|gb|ACV63959.1| ribosomal protein L11 methyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 307

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
              G  VI++G G G L      LGA  V  ++ D     +  + +      +++E+++ 
Sbjct: 164 LRPGDRVIDVGTGSGILAVTAAKLGAGSVRAVDNDPVAVRVALENAELNGVTDKVEVLES 223

Query: 103 DALKV 107
           D L +
Sbjct: 224 DLLAM 228


>gi|257082205|ref|ZP_05576566.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           E1Sol]
 gi|257416412|ref|ZP_05593406.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           AR01/DG]
 gi|256990235|gb|EEU77537.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           E1Sol]
 gi|257158240|gb|EEU88200.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           ARO1/DG]
          Length = 315

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      K+    +P    + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|242242888|ref|ZP_04797333.1| caffeoyl-CoA O-methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|242233663|gb|EES35975.1| caffeoyl-CoA O-methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 211

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPI 85
           Q  ++D   L  I +         ++EIG   G  +     +     V  IE+++    +
Sbjct: 30  QVPIVDKLTLDLIRQLIRMNRTKNILEIGTAIGYSSMQFANISKDINVTTIERNEDMIHL 89

Query: 86  LKDISS--QHPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            K   +  ++ N++ II+ DAL       D +         +  +   + + T LL  
Sbjct: 90  AKKFINKYRYQNQIRIIEYDALNAFEQVNDKQYDMIFIDAAKAQSKKFFQLYTPLLKK 147


>gi|298530377|ref|ZP_07017779.1| hypothetical protein Dthio_PD0991 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509751|gb|EFI33655.1| hypothetical protein Dthio_PD0991 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 208

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKD--I 89
             +++     +       V+ IG G    T   +  L   +V  ++ D       +    
Sbjct: 30  RQVIENEITLAKLGKDDVVLNIGCGAVPFTALYIAKLAGSRVYALDIDPCAAGYAEKCVK 89

Query: 90  SSQHPNRLEIIQDD 103
            +   +R+ ++  D
Sbjct: 90  KAGLEDRITVMHAD 103


>gi|126659548|ref|ZP_01730680.1| ubiquinone/menaquinone biosynthesis methyltransferase [Cyanothece
           sp. CCY0110]
 gi|126619187|gb|EAZ89924.1| ubiquinone/menaquinone biosynthesis methyltransferase [Cyanothece
           sp. CCY0110]
          Length = 243

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 18/97 (18%)

Query: 24  YMGQNFLLDLNILKKI-----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             GQ+         +I        + +      ++I  G G+L+Q+L     +   VI  
Sbjct: 31  SFGQH---------RIWKQMTVNWTEAKHSDVGLDICCGSGDLSQLLARKVGKTGKVIGL 81

Query: 79  D--QQFFPILKDISSQHPN--RLEIIQDDALKVDFEK 111
           D  Q+   I    +S+     RLE +Q DAL + FE 
Sbjct: 82  DFSQELLAIAAQRASKKYPMLRLEWVQGDALNLPFED 118


>gi|39949332|ref|XP_363184.1| hypothetical protein MGG_08768 [Magnaporthe oryzae 70-15]
 gi|145009314|gb|EDJ94025.1| hypothetical protein MGG_08768 [Magnaporthe oryzae 70-15]
          Length = 273

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEII 100
                  ++++G GPG +T     +    +V+ I+  +      + ++++   P+ L   
Sbjct: 37  HLKPTDKILDVGCGPGTITIGFAAIAHDGEVVGIDISEDILGQARQVAAKAGSPSNLSFR 96

Query: 101 QDDALK 106
             D LK
Sbjct: 97  HGDVLK 102


>gi|52549994|gb|AAU83843.1| tRNA (1-methyladenosine) methyltransferase [uncultured archaeon
           GZfos34G5]
          Length = 268

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+  L+ Y    KK   Q  ++    +  I   +    G  V+E G G G LT  LL   
Sbjct: 62  LRPTLAEYLSRMKKG-SQ--IIYPKDIGAILMLADIFPGANVLEAGTGSGALTIALLRAV 118

Query: 70  AR--KVIVIEKDQQFFPI 85
            R  KVI  E+  +F  I
Sbjct: 119 GRDGKVISYERRNEFAAI 136


>gi|148265334|ref|YP_001232040.1| methyltransferase type 11 [Geobacter uraniireducens Rf4]
 gi|146398834|gb|ABQ27467.1| Methyltransferase type 11 [Geobacter uraniireducens Rf4]
          Length = 192

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 37  KKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           +KI  + G   G   ++E G G G  T     L A  V  ++ + +    +++   Q   
Sbjct: 21  EKILRTFGLDRGVKDIVEFGCGYGTFTLAAAKLAAGTVHALDIEPEMVETVREKCRQAGV 80

Query: 95  NRLEIIQDDAL 105
           + +  +  D +
Sbjct: 81  DNVHAVVRDFV 91


>gi|314933780|ref|ZP_07841145.1| O-methyltransferase family protein [Staphylococcus caprae C87]
 gi|313653930|gb|EFS17687.1| O-methyltransferase family protein [Staphylococcus caprae C87]
          Length = 211

 Score = 39.0 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPI 85
           Q  ++D   L  I +         ++EIG   G  +    ++     V  IE+++    +
Sbjct: 30  QVPIVDKLALDMIKQLIRMNHTKNILEIGTAIGYSSMQFSSVANDIHVTTIERNEDMIAL 89

Query: 86  LKDISSQ--HPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            ++   Q  +  ++ +I+ +AL+      D E         +  +   + + T LL  
Sbjct: 90  ARNYFHQYGYNEQIRLIEGNALETYQQVNDREYDMIFIDAAKAQSKKFFELYTPLLRK 147


>gi|304436719|ref|ZP_07396688.1| precorrin-6y c5,15-methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370415|gb|EFM24071.1| precorrin-6y c5,15-methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 191

 Score = 39.0 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEII 100
           +       V ++GAG G+L+     L  +  V  IEK+ +   ++K+ +++     L +I
Sbjct: 30  AQIAPDAVVYDVGAGTGSLSVEAARLAPQGHVYAIEKNPEGIALIKENAARFSTPNLTVI 89

Query: 101 QDDA 104
           +  A
Sbjct: 90  EGAA 93


>gi|299530724|ref|ZP_07044139.1| methyltransferase small [Comamonas testosteroni S44]
 gi|298721240|gb|EFI62182.1| methyltransferase small [Comamonas testosteroni S44]
          Length = 404

 Score = 39.0 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 36  LKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ----FFPILKDIS 90
           L  +A +S    G     +IG G G L+ +LL  G + V+  +  ++        L+ + 
Sbjct: 212 LDLVARASIPAAGLEQAWDIGVGTGVLSALLLKRGVKSVVATDTSERALACACENLQRL- 270

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             H +R+E+   D         F       I+ N P+
Sbjct: 271 -GHASRVELQHAD--------LFAQGQAGLIVCNPPW 298


>gi|291451370|ref|ZP_06590760.1| O-methyltransferase [Streptomyces albus J1074]
 gi|291354319|gb|EFE81221.1| O-methyltransferase [Streptomyces albus J1074]
          Length = 345

 Score = 39.0 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            K+       +G  V+EIGAG G    L    L  G+  V  ++ D       +      
Sbjct: 126 AKMLADLRVHEGDRVLEIGAGTGWNAALLAYRL--GSAHVTTVDLDPDITDSARRHLEAA 183

Query: 94  PNRLEIIQDD 103
                ++  D
Sbjct: 184 GLHPHVVTGD 193


>gi|255975486|ref|ZP_05426072.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis T2]
 gi|307277698|ref|ZP_07558784.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0860]
 gi|255968358|gb|EET98980.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis T2]
 gi|306505577|gb|EFM74761.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0860]
          Length = 315

 Score = 39.0 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      K+    +P    + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|218778670|ref|YP_002429988.1| protein-L-isoaspartate O-methyltransferase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760054|gb|ACL02520.1| protein-L-isoaspartate O-methyltransferase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 242

 Score = 39.0 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + +         V+EIG G G    +L  L AR+V  +E  +        I +Q
Sbjct: 92  PYIVALMTQVLELDGSEKVLEIGTGSGYQAAVLGEL-AREVYTMEIVEPLGERAAKILAQ 150

Query: 93  -HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            H + +++   D  K   E   +      I+   P +I   L+        
Sbjct: 151 LHYDNVKVKVGDGYKGWPE---HAPFDAIIVTCAPTDIPAPLVEQLAEGGR 198


>gi|170580633|ref|XP_001895347.1| hypothetical protein Bm1_19460 [Brugia malayi]
 gi|158597746|gb|EDP35800.1| hypothetical protein Bm1_19460 [Brugia malayi]
          Length = 817

 Score = 39.0 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL---EI 99
           +       V+++G G G LT +      R V   E D     I + I ++   R    EI
Sbjct: 152 ANWRPESRVLDLGTGTGLLTSIARRHFKRDVYCCEVDLNMCDIAEKILNEAVIRKHSSEI 211

Query: 100 IQDDA 104
           I +D 
Sbjct: 212 ILEDI 216


>gi|82617164|emb|CAI64071.1| conserved hypothetical protein [uncultured archaeon]
          Length = 269

 Score = 39.0 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           L+  L+ Y    KK   Q  ++    +  I   +    G  V+E G G G LT  LL   
Sbjct: 63  LRPTLAEYLSRMKKG-SQ--IIYPKDIGAILMLADIFPGANVLEAGTGSGALTIALLRAV 119

Query: 70  AR--KVIVIEKDQQFFPILKDISSQHPNRLEI 99
            R  KVI  E+  +F  I          ++ I
Sbjct: 120 GRDGKVISYERRNEFAAIANSNIETFFEQVGI 151


>gi|323137290|ref|ZP_08072368.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Methylocystis sp. ATCC 49242]
 gi|322397277|gb|EFX99800.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Methylocystis sp. ATCC 49242]
          Length = 400

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 32  DLNILKKIAESS-----GSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPI 85
           D  + K+   +          G T+ +IGAG G+++ + +L   A + + IE+D +    
Sbjct: 229 DGQLTKREIRAVTLSALAPRKGETLWDIGAGSGSISIEWMLRDPANRAVAIERDAERAAR 288

Query: 86  --LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             L  ++   P+ L I+   A     +    ++ P  I 
Sbjct: 289 ISLNALALGVPD-LRILTGAA----PQALAGLAPPDAIF 322


>gi|302383414|ref|YP_003819237.1| methyltransferase small [Brevundimonas subvibrioides ATCC 15264]
 gi|302194042|gb|ADL01614.1| methyltransferase small [Brevundimonas subvibrioides ATCC 15264]
          Length = 254

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 46  LDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPI--LKDISSQHPNRLEIIQD 102
             G  V+E G G G  LTQ+        V  +E+D     +       +   +R+ ++Q 
Sbjct: 48  KPGERVLEAGCGVGAVLTQIAARRPGVVVTGVERDPAAVALGACNVGLNALQDRMAVVQA 107

Query: 103 DA 104
           D 
Sbjct: 108 DV 109


>gi|260912826|ref|ZP_05919312.1| biotin biosynthesis protein BioC [Pasteurella dagmatis ATCC 43325]
 gi|260633204|gb|EEX51369.1| biotin biosynthesis protein BioC [Pasteurella dagmatis ATCC 43325]
          Length = 256

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           V+EIG G G LT++L+     +   +        +   +    P   +    DA  + FE
Sbjct: 54  VLEIGCGTGGLTKLLMQYLQAEYWELN---DLCDMQAHLQEYLPKPFQFHCGDAETLSFE 110

Query: 111 KFFNI 115
           K +++
Sbjct: 111 KKYDL 115


>gi|220936143|ref|YP_002515042.1| putative methyltransferase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997453|gb|ACL74055.1| putative methyltransferase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 205

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
           G + G   +++ AG G L     + GA +V+++E   +    L++        +R+E+I 
Sbjct: 54  GIVPGARCLDLFAGAGGLGFEAASRGAARVVMVEAAPRVAAHLREQVQLLGAADRVEVIA 113

Query: 102 DDALKV 107
            DAL  
Sbjct: 114 ADALAY 119


>gi|297619375|ref|YP_003707480.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus
           voltae A3]
 gi|297378352|gb|ADI36507.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus voltae A3]
          Length = 195

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQ 101
                   VI+IG G G +T  + T+ A+K   I+ ++           +   +  E+I 
Sbjct: 28  LNLTHDDIVIDIGCGSGGMTVEIATI-AKKAYAIDNNEDAINTTNANLEKFDIKNCEVIS 86

Query: 102 DDA 104
            DA
Sbjct: 87  GDA 89


>gi|134099209|ref|YP_001104870.1| methyltransferase type 11 [Saccharopolyspora erythraea NRRL 2338]
 gi|291009983|ref|ZP_06567956.1| methyltransferase type 11 [Saccharopolyspora erythraea NRRL 2338]
 gi|133911832|emb|CAM01945.1| methyltransferase type 11 [Saccharopolyspora erythraea NRRL 2338]
          Length = 240

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 33  LNILKKI-----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
            ++ +KI     A ++   DG  V+++G GPGN+T ML  +   + +V+  D     + +
Sbjct: 57  QSLARKIMTTLPASATRLPDGARVLDVGCGPGNITGMLGRVVGPEGLVLGLDISAVMLER 116

Query: 88  DISSQHPNRLEIIQDDALKVDFEK-FFNISSPIRIIANLPYNIG 130
            + ++    +  ++ DA ++ F+   F+    I  + N P  + 
Sbjct: 117 AVRAEGAPHVGFLRADACQLPFQDNSFDAVVSIATVHNTPEPLT 160


>gi|114569403|ref|YP_756083.1| hemolysin A [Maricaulis maris MCS10]
 gi|114339865|gb|ABI65145.1| hemolysin A [Maricaulis maris MCS10]
          Length = 244

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 44  GSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQ 101
           G      V +++G+  G  T++LL+ GAR V  ++  +      L+        R+  ++
Sbjct: 72  GVDPADRVCLDVGSSTGGFTEVLLSRGARHVYAVDVGRDQLHASLQ-----ADRRVTSLE 126

Query: 102 D-DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
             DA  +  E F     P  ++ +  +    +++   ++         +L    Q EVG+
Sbjct: 127 ATDARSLAGEMF--SEPPSLVVCDASFISLLKVIARPLALSAATSDLIALVK-PQFEVGK 183

Query: 161 RITAQKN 167
            +  +  
Sbjct: 184 ALIGKGG 190


>gi|120405572|ref|YP_955401.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119958390|gb|ABM15395.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1]
          Length = 248

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          + +     +G   G  V+++G GPG LT  L ++GA  +  I+    F   ++       
Sbjct: 21 LAEAFVAFAGVGVGDKVLDVGCGPGALTARLRSVGAD-IAAIDPSPPFIDAIRRSFPDVD 79

Query: 95 NR 96
           R
Sbjct: 80 VR 81


>gi|77747528|ref|NP_298269.2| hypothetical protein XF0979 [Xylella fastidiosa 9a5c]
          Length = 208

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L G  V+++ AG G L    ++ GA + +++E+  +    L++  ++    +++EI+Q 
Sbjct: 55  VLPGAHVLDLFAGSGALGLEAVSRGAARAVLVERHAELVVRLREQVARLGAQDQVEIVQA 114

Query: 103 DALKV 107
           DAL+ 
Sbjct: 115 DALQW 119


>gi|114048720|ref|YP_739270.1| methyltransferase small [Shewanella sp. MR-7]
 gi|123326200|sp|Q0HRP2|TRMN6_SHESR RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|113890162|gb|ABI44213.1| methyltransferase small [Shewanella sp. MR-7]
          Length = 236

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +   +   +++IGAG G L+ M       ++  +E +++     +   +Q P   R +++
Sbjct: 30  APLAEAKNILDIGAGSGLLSLMAAQRSQGQITAVELEEKAAAACRYNMTQSPWAKRCQLV 89

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
             D   V     +       II N PY
Sbjct: 90  HGDIQHVCQLAQYQGYF-DHIICNPPY 115


>gi|320527281|ref|ZP_08028466.1| methyltransferase domain protein [Solobacterium moorei F0204]
 gi|320132305|gb|EFW24850.1| methyltransferase domain protein [Solobacterium moorei F0204]
          Length = 205

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I+ KI ++  S    TV++IG G G LTQ L + G   +   +   +      +++S   
Sbjct: 35  IIYKIYKTVISKPNATVLDIGFGTGTLTQKLYSYGCD-IYGQDFSLRMI----ELASNKM 89

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               + + D  K   +K    S    I     +++       ++  
Sbjct: 90  PNASLYRGDFTKGIVDKLKQHSYDFIIATYSIHHLKEAEKIKFLHE 135


>gi|289705196|ref|ZP_06501598.1| tRNA methyltransferase complex GCD14 subunit [Micrococcus luteus
           SK58]
 gi|289558086|gb|EFD51375.1| tRNA methyltransferase complex GCD14 subunit [Micrococcus luteus
           SK58]
          Length = 354

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 6/75 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I + +    G  V+E G G G L+  LL       ++   E+  +F  + +      
Sbjct: 95  AAQIVQQADIFPGAVVVEAGVGSGALSMSLLRAVGDHGRLHSYERRPEFADVARANVEAF 154

Query: 94  PNRLE----IIQDDA 104
                    +   DA
Sbjct: 155 FGAEHPAWSVHLGDA 169


>gi|284997415|ref|YP_003419182.1| methyltransferase FkbM family [Sulfolobus islandicus L.D.8.5]
 gi|284445310|gb|ADB86812.1| methyltransferase FkbM family [Sulfolobus islandicus L.D.8.5]
          Length = 244

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQ 101
            G  V++IGAG G+        GA++V+ +E D++   +++D    +  N + I+ 
Sbjct: 102 KGKRVLDIGAGIGDSPIYFSIAGAKEVVAVEIDKRKVELMRDNLKVNGINNVTIVD 157


>gi|284165945|ref|YP_003404224.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284015600|gb|ADB61551.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 231

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 39  IAESS----GSLDGITVIEIGAGPG-NLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ 92
           I E++        G  V+EIG GPG N  ++   +GA  +++ ++         +     
Sbjct: 49  IREAAIDRLDLQRGDRVLEIGCGPGVNFERVRRDIGAEGELVAVDYSPGMLENARARIEA 108

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
           H    + +++ DA  V+F+  F+++     ++ +P
Sbjct: 109 HGWENVRVLRADATTVEFDDPFDVALATLSLSVMP 143


>gi|229366852|gb|ACQ58406.1| Methyltransferase-like protein 10 [Anoplopoma fimbria]
          Length = 238

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEI 99
           + +   +   +++IG G G     L   G R +  I+       + +++        + +
Sbjct: 74  DKAKIPEDAAILDIGTGNGAFLVELAKHGCRNLTGIDYSPASVELARNVLQAEDLTAVTV 133

Query: 100 IQDDALKVD 108
            + D L   
Sbjct: 134 KEMDFLNCH 142


>gi|16769804|gb|AAL29121.1| SD02225p [Drosophila melanogaster]
          Length = 252

 Score = 39.0 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
            ++  L G  ++E+G G G LT+ L  LGA +V  I+  ++     ++        L
Sbjct: 30 VNTTKVLLGQNILEVGCGGGLLTEHLARLGA-QVTGIDLGEKLIEAAREHLKCSSPEL 86


>gi|322369243|ref|ZP_08043808.1| methyltransferase type 12 [Haladaptatus paucihalophilus DX253]
 gi|320550975|gb|EFW92624.1| methyltransferase type 12 [Haladaptatus paucihalophilus DX253]
          Length = 229

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
              + I V+E+GAG G LT  LLT      V+ ++  +      +       +R +I+Q 
Sbjct: 39  DRTEEIRVLELGAGTGELTAKLLTRFPESTVLAVDHSEGMLAEAERKLETFGDRADIVQG 98

Query: 103 DA 104
             
Sbjct: 99  TF 100


>gi|229007162|ref|ZP_04164782.1| RRNA adenine dimethylase [Bacillus mycoides Rock1-4]
 gi|228754088|gb|EEM03513.1| RRNA adenine dimethylase [Bacillus mycoides Rock1-4]
          Length = 98

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
          + KK+  +    +   ++E+G G G+ T+ ++       I I
Sbjct: 27 LAKKMVGAINFEEAKYILELGPGTGSFTREIIKRKKEHTIFI 68


>gi|209526649|ref|ZP_03275173.1| methyltransferase small [Arthrospira maxima CS-328]
 gi|209492885|gb|EDZ93216.1| methyltransferase small [Arthrospira maxima CS-328]
          Length = 236

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQ 101
                  +++IG G G +  +L      ++  +E D+  +    +  +  P  +RL+I  
Sbjct: 34  DIKSVDNILDIGTGSGLIALILAQRSPAEIEAVEIDKDAYIQASENIANSPWRSRLKIYH 93

Query: 102 DDALKVDFEKFFNISSPIRIIANLPY 127
           +   K      F       II+N P+
Sbjct: 94  NSIQKY---ADFCDIQYDLIISNPPF 116


>gi|170017687|ref|YP_001728606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum
           KM20]
 gi|169804544|gb|ACA83162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum
           KM20]
          Length = 473

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK--DQQFFPILKDISSQHPNRL 97
           AE +G      V++  +G G +T  +    A KV  +E   D       K+  + H + +
Sbjct: 319 AEKAGLKPTDVVVDAYSGIGTITLSIADQVA-KVYGVEVVEDAVLDAE-KNAQNNHIDNV 376

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           E +  DA +   +   +   P  +  + P    T  L + +SA     F 
Sbjct: 377 EFVTADAPEQMTQWAADGLKPDVVFVDPPRKGLTNELISAVSAMQPKTFV 426


>gi|163750313|ref|ZP_02157554.1| hypothetical protein KT99_07049 [Shewanella benthica KT99]
 gi|161329985|gb|EDQ00970.1| hypothetical protein KT99_07049 [Shewanella benthica KT99]
          Length = 250

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEII 100
           +      ++++IGAG G L+ M        +  IE D+      +     S+   RL I 
Sbjct: 37  APLTRAKSILDIGAGSGLLSLMAAQRSEAIITAIELDETAASACERNFQASKWGERLTIE 96

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
           Q        ++         II N PY
Sbjct: 97  QCAIQDFAQQRLDTQVKFEHIICNPPY 123


>gi|162450752|ref|YP_001613119.1| SAM-dependent methyltransferases [Sorangium cellulosum 'So ce 56']
 gi|161161334|emb|CAN92639.1| SAM-dependent methyltransferases [Sorangium cellulosum 'So ce 56']
          Length = 248

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 29/193 (15%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             +  +L  ++V+++G G G+    L+ LGA    +   D        DI+      +  
Sbjct: 63  VRTHEALREMSVLDVGCGSGSNLAWLVELGANSSRLTGID--LVAQRTDIARSRYAGIRF 120

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           +  D LK D    F++   + +++    ++    L   +                   + 
Sbjct: 121 MAGDFLKTDVGGPFDMVMMLAVLS----SVTNAELKRRLVDKALALLKPGGVFFLYDVIS 176

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH--------------VFFPSPKVTSTV 205
            R      +  Y RL+        A +   ++P                    P+V  TV
Sbjct: 177 RRHV--PGTAEYQRLTF-------AELEGYVAPRKIRYFRKDLLRRGVAERLLPRVGVTV 227

Query: 206 IHFIPHLNPIPCC 218
              +         
Sbjct: 228 TELVQATRLFNID 240


>gi|150399935|ref|YP_001323702.1| hypothetical protein Mevan_1192 [Methanococcus vannielii SB]
 gi|150012638|gb|ABR55090.1| conserved hypothetical protein [Methanococcus vannielii SB]
          Length = 177

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISS 91
              +K+  E +       V+ IG+G    T   +  L    V  ++ D++     K    
Sbjct: 27  EKTVKREIELANITSKDKVLVIGSGSIPFTAIHVSKLTGANVTAVDIDKEAVEKSKSCIK 86

Query: 92  QHP-NRLEIIQDDALKVDFEKF 112
           ++  N + ++ ++ L VD   +
Sbjct: 87  KYNFNNITVLNENGLNVDCNNY 108


>gi|15806098|ref|NP_294802.1| antibiotic biosynthesis protein LmbJ [Deinococcus radiodurans R1]
 gi|6458810|gb|AAF10651.1|AE001958_5 antibiotic biosynthesis protein LmbJ, putative [Deinococcus
           radiodurans R1]
          Length = 296

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                G  V+EIGAG G +T  L   GA  V+ +E   +     +  +++    LE++Q 
Sbjct: 77  LAERAGGRVLEIGAGTGRVTAFLTRRGA-AVLGVEPSGEMIVGAQARAAREGLTLELVQA 135

Query: 103 DALKVDFEKFFNI 115
            A     ++ F +
Sbjct: 136 TAQTFASDERFGL 148


>gi|117923687|ref|YP_864304.1| protein-L-isoaspartate O-methyltransferase [Magnetococcus sp. MC-1]
 gi|209573195|sp|A0L4K5|PIMT_MAGSM RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|117607443|gb|ABK42898.1| protein-L-isoaspartate O-methyltransferase [Magnetococcus sp. MC-1]
          Length = 228

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           + Q        + +++++     G+ V+EIG G G  T +L  L  R+V  +E+      
Sbjct: 75  LSQ-----PYTVARMSQALELGYGMHVLEIGTGSGYQTAVLAALC-RRVYTVERIPSLAL 128

Query: 85  ILKDISSQ 92
           + ++   +
Sbjct: 129 LARERLER 136


>gi|332300278|ref|YP_004442199.1| Methyltransferase type 11 [Porphyromonas asaccharolytica DSM 20707]
 gi|332177341|gb|AEE13031.1| Methyltransferase type 11 [Porphyromonas asaccharolytica DSM 20707]
          Length = 244

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 56/176 (31%), Gaps = 32/176 (18%)

Query: 51  VIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
           V+++G G G L+ ML     +  V  I+ D +     +D  S+ P  +RL  +  D    
Sbjct: 41  VLDVGTGTGILSLMLAQTYPSAMVTAIDIDDEAVRTAQDNFSRSPYGDRLTALSCDI--T 98

Query: 108 DFEKFFNISSPIRIIANLPYN-------------------IGTRLLFNWISADTWPPFWE 148
             E      +   II+N PY                        LLF ++ A   P    
Sbjct: 99  APELALPPRTYDLIISNPPYYDGLQPATAPLRQARHTEEGFAPHLLFRYLEAFVAPEPTL 158

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA-----TMMFDISPHVFFPSP 199
            L    +      +  ++   H   L+ L G           ++         P P
Sbjct: 159 CLVTPVE---ALPLLRREAVLHRYNLTRLCGLHHHVGQPAIRLLTQWHRSATPPPP 211


>gi|310829813|ref|YP_003962170.1| methyltransferase type 11 [Eubacterium limosum KIST612]
 gi|308741547|gb|ADO39207.1| methyltransferase type 11 [Eubacterium limosum KIST612]
          Length = 293

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 32/169 (18%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           +++IG+G G     L   GA  V  ++   +   I++  + +    +++   D  ++   
Sbjct: 70  ILDIGSGTGAFALPLAACGA-AVTALDCSPEMNRIVRQKAREKDLNVKVQTGDFNRLP-- 126

Query: 111 KFFNISSPIRIIANLPYNIGTRLLF-NWISADTWPPFWESLTLLFQKE------------ 157
             F   +   +I ++   +     F   +S       +  +     K+            
Sbjct: 127 --FETRAYDLVIGSMNPGLYHPEPFLRMLSLSRDLVVYVGICDTPVKKKDNGSCKSLDEI 184

Query: 158 VGERITAQKNSPH------------YGR--LSVLTGWRTKATMMFDISP 192
           +         S H            Y    L V   WR +     ++  
Sbjct: 185 LLGHTLTHSGSNHVQYPCQLLKAMGYRPVVLPVQCQWRCEEEEALEVGR 233


>gi|302845698|ref|XP_002954387.1| hypothetical protein VOLCADRAFT_106378 [Volvox carteri f.
           nagariensis]
 gi|300260317|gb|EFJ44537.1| hypothetical protein VOLCADRAFT_106378 [Volvox carteri f.
           nagariensis]
          Length = 211

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 9/145 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             L G TV+++G G   L+     LG+R V+ ++ D +   +  + ++Q+   L I   D
Sbjct: 45  DELAGSTVVDLGCGTAMLSIGAALLGSRHVLGLDIDAEALEVAGENAAQYEEPLPI---D 101

Query: 104 ALKVDFEKFFNISSPIR---IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
            L  D  +       +R   +I N P+    +   +     +      +      K    
Sbjct: 102 FLLADVRQLPRQLPRLRADVVIMNPPFG-TKQKGVDLAFLRSAFHIATTSIYSLHKSSTR 160

Query: 161 RITAQKNSPHYGRLS--VLTGWRTK 183
              A+      G  S  V+   R  
Sbjct: 161 EFIAKTAKRELGAGSAEVVAQLRYD 185


>gi|254470515|ref|ZP_05083919.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062]
 gi|211960826|gb|EEA96022.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062]
          Length = 346

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ E+     G  +++   G G  +   L  GA  VI I++D       + +   
Sbjct: 21  PVLLDRVREAMAPAPGDVIVDGTFGAGGYSSAFLEAGA-SVIGIDRDPDAIRDGRALEQA 79

Query: 93  HPNRLEIIQDDALKVD 108
              RL+++    + ++
Sbjct: 80  SDGRLKLVHGQFVDLE 95


>gi|21358269|ref|NP_648565.1| CG4300, isoform B [Drosophila melanogaster]
 gi|7294595|gb|AAF49934.1| CG4300, isoform B [Drosophila melanogaster]
 gi|17945301|gb|AAL48707.1| RE15265p [Drosophila melanogaster]
 gi|28316837|gb|AAO39442.1| RH73632p [Drosophila melanogaster]
 gi|220949442|gb|ACL87264.1| CG4300-PB [synthetic construct]
          Length = 366

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 19/107 (17%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDL--NILKK--------IAESSGSLDGITVIEIGAGPGN 60
           ++     +I+  K +G   LLD   NI +         +     + +G  +  +G G G 
Sbjct: 148 RSPFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICILGGGDGA 207

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
           L   LL    + V+++E D        ++  Q  N+ L +I  D L+
Sbjct: 208 LLYELLKENPKHVVMLEID--------ELVMQTCNKYLNVICGDVLE 246


>gi|33592791|ref|NP_880435.1| protein-L-isoaspartate O-methyltransferase [Bordetella pertussis
           Tohama I]
 gi|33572439|emb|CAE42007.1| protein-L-isoaspartate O-methyltransferase [Bordetella pertussis
           Tohama I]
 gi|332382204|gb|AEE67051.1| protein-L-isoaspartate O-methyltransferase [Bordetella pertussis
           CS]
          Length = 212

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQ 92
           + + IA          V+E+GAG G    +L  +  R+V  IE+ +  + + +    + +
Sbjct: 65  VARMIAAVCEDRAPARVLEVGAGCGYQAAVLAQI-VREVHAIERIRGLYELARGHLRALR 123

Query: 93  HPNRLEIIQDDAL 105
              R+ +I  D +
Sbjct: 124 LATRVRLIHGDGM 136


>gi|103488653|ref|YP_618214.1| methyltransferase type 11 [Sphingopyxis alaskensis RB2256]
 gi|98978730|gb|ABF54881.1| Methyltransferase type 11 [Sphingopyxis alaskensis RB2256]
          Length = 239

 Score = 39.0 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 4/130 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
            + + +S+    G+TV +IGAG G  T  L        +V+  +   +    L D  ++ 
Sbjct: 62  AEDVMDSADVRPGMTVADIGAGDGYYTVRLAQRVGPGGRVLAQDIIPEVIERLADRVAR- 120

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
             RL+ +      VD  +    S     + ++ + IG    F W          + + + 
Sbjct: 121 -ERLDNVSLKLGAVDDPRLPAASFDRVFMVHMYHEIGEPYAFLWRLRPALREGGQVIVVD 179

Query: 154 FQKEVGERIT 163
             + + +  T
Sbjct: 180 GDRPIAQHGT 189


>gi|328887293|emb|CCA60532.1| Uncharacterized methyltransferase [Streptomyces venezuelae ATCC
           10712]
          Length = 229

 Score = 39.0 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 6/101 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  +L +            V++IG G G L       GAR V+ ++   +     K  + 
Sbjct: 28  DTRLLAEALSREELDATTDVLDIGTGTGALALCAARTGAR-VVAVDVSWRAVIAAKLNAI 86

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           +   RL ++  D       + F++     I+ N PY    R
Sbjct: 87  RQGQRLRVLHGDFSTRVQGRRFDL-----ILTNPPYVPSAR 122


>gi|325920673|ref|ZP_08182583.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325548863|gb|EGD19807.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 444

 Score = 39.0 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 31  LDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           ++ ++ +K+   +     +     V+++  G GN T  L   G R+V+ +E D       
Sbjct: 277 VNASLNQKMIAHALALLDARPEDRVLDLFCGLGNFTLPLA-RGVREVVGVEGDAGLVARA 335

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           ++ + ++  +  +    D  +      +      +++ + P +    +L   
Sbjct: 336 RENAQRNGLDNAQFHAADLTQDQRHTAWMRQGFDKLLLDPPRSGALEVLQQL 387


>gi|312951284|ref|ZP_07770185.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0102]
 gi|310630720|gb|EFQ14003.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0102]
 gi|315152590|gb|EFT96606.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0031]
          Length = 315

 Score = 39.0 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      K+    +P    + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|308068088|ref|YP_003869693.1| phospholipid N-methyltransferase [Paenibacillus polymyxa E681]
 gi|305857367|gb|ADM69155.1| Phospholipid N-methyltransferase [Paenibacillus polymyxa E681]
          Length = 191

 Score = 39.0 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQ 92
          + K + ES    +   V E+GAG G +TQ +        KV++ EKDQ     LK     
Sbjct: 35 LAKNMIESIPWSEVHAVAELGAGTGAITQYIPSAAKFQPKVLLFEKDQTMQQSLKRRFPN 94

Query: 93 H 93
          +
Sbjct: 95 Y 95


>gi|300784775|ref|YP_003765066.1| cyclopropane-fatty-acyl-phospholipid synthase [Amycolatopsis
           mediterranei U32]
 gi|299794289|gb|ADJ44664.1| cyclopropane-fatty-acyl-phospholipid synthase [Amycolatopsis
           mediterranei U32]
          Length = 418

 Score = 39.0 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHP 94
           +  + + +G  +G  V+EIG G G L       GA    + I ++Q+     +  ++   
Sbjct: 189 IDSVLDYAGVREGSEVLEIGTGWGELAIRAAARGAHVTSLTISEEQRALATERIAAAGFS 248

Query: 95  NRLEIIQDD 103
           +R+E+   D
Sbjct: 249 DRVEVKLCD 257


>gi|294628767|ref|ZP_06707327.1| methyltransferase domain-containing protein [Streptomyces sp. e14]
 gi|292832100|gb|EFF90449.1| methyltransferase domain-containing protein [Streptomyces sp. e14]
          Length = 230

 Score = 39.0 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 13/130 (10%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             ++    G  ++E+G G G +T  LL  G   V  +++  +    ++            
Sbjct: 38  VIAAAVPAGAHILELGCGVGRVTHPLLERG-FTVTAVDESPEMLERVRGA--------RT 88

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I      ++  + F+    + ++A+   + G   +   +         E   +L Q+E  
Sbjct: 89  ICGPIEDLELGETFD----VVMLASFLVHAGDPEVRRGLLRACARHVAEDGCVLIQREGA 144

Query: 160 ERITAQKNSP 169
           +  T      
Sbjct: 145 DYHTNLPRER 154


>gi|257090257|ref|ZP_05584618.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           CH188]
 gi|312902755|ref|ZP_07761959.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0635]
 gi|256999069|gb|EEU85589.1| 50S ribosomal protein L11 methyltransferase [Enterococcus faecalis
           CH188]
 gi|310633809|gb|EFQ17092.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0635]
 gi|315576686|gb|EFU88877.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0630]
          Length = 315

 Score = 39.0 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      K+    +P    + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|326202056|ref|ZP_08191926.1| ribosomal protein L11 methyltransferase [Clostridium papyrosolvens
           DSM 2782]
 gi|325987851|gb|EGD48677.1| ribosomal protein L11 methyltransferase [Clostridium papyrosolvens
           DSM 2782]
          Length = 316

 Score = 39.0 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            D   V++IG G G L+ +   LGA+ V  I+ D+    + K+
Sbjct: 173 KDDTQVLDIGCGTGILSIIAAKLGAKTVEAIDIDEVAVKVAKE 215


>gi|194869781|ref|XP_001972520.1| GG13840 [Drosophila erecta]
 gi|190654303|gb|EDV51546.1| GG13840 [Drosophila erecta]
          Length = 367

 Score = 39.0 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 19/107 (17%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDL--NILKK--------IAESSGSLDGITVIEIGAGPGN 60
           ++     +I+  K +G   LLD   NI +         +     + +G  +  +G G G 
Sbjct: 149 RSPFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICILGGGDGA 208

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
           L   LL    + V+++E D        ++  Q  N+ L +I  D L+
Sbjct: 209 LLYELLKENPKHVVMLEID--------ELVMQTCNKYLNVICGDVLE 247


>gi|70606437|ref|YP_255307.1| hypothetical protein Saci_0622 [Sulfolobus acidocaldarius DSM 639]
 gi|68567085|gb|AAY80014.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 200

 Score = 39.0 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            + I E     DG TV+++G+G G L+   L LGA++V+ I+ +         + +   N
Sbjct: 27  TELIMEMIKIKDGETVLDMGSGTGILSLHALKLGAKRVLSIDVNPNAAD--ATLCTLKSN 84

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                  + L          +     I N PY
Sbjct: 85  GFS---GNVLNCYLLDCIRNTKFDVAIFNPPY 113


>gi|61653196|gb|AAX48150.1| putative magnesium-protoporphyrin O-methyltransferase [uncultured
           proteobacterium DelRiverFos13D03]
          Length = 221

 Score = 39.0 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEI 99
                L G+ V++ G G G +T  L   GA  V+ ++       I ++   ++H +++  
Sbjct: 53  RLPADLRGVRVLDAGCGAGQMTAELAARGAD-VVAVDISPALVDIARNRLPAEHAHKVTF 111

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
              D +  D+ +F  + +   +I     +I + L
Sbjct: 112 ASGD-MTADYGRFDFVLAMDSLIYYGTQDITSAL 144


>gi|328477954|gb|EGF47879.1| SAM-dependent methyltransferase [Lactobacillus rhamnosus MTCC 5462]
          Length = 175

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPIL-------KD 88
           IA++     G  ++EIG G G+L+ +L         V   D   + +   L         
Sbjct: 34  IADAWQIQPGENILEIGCGQGDLSAVLADQVGPSGHVTGIDIASRDYGAPLTLGQAWDHL 93

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           ++    +RL +  D  L        N      ++A+  +   +   F  +     P    
Sbjct: 94  LNGPLASRLTVHFDTNLAASLGPVANQHFDRIVMAHSLWYFASANAFALLLKTCAPLAIM 153

Query: 149 SL 150
           S+
Sbjct: 154 SI 155


>gi|303246953|ref|ZP_07333229.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
 gi|302491660|gb|EFL51543.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
          Length = 223

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +        ++++G GPG L+  L     R+V  ++   +   + ++  +  P  +   +
Sbjct: 48  AKHVTPNSRLLDVGCGPGTLSIRLSRRC-REVWGVDVTPEMIRVAEEKLACEPANVCFQE 106

Query: 102 DDALKVDFE 110
            DA  + FE
Sbjct: 107 ADACDLPFE 115


>gi|194878437|ref|XP_001974063.1| GG21520 [Drosophila erecta]
 gi|190657250|gb|EDV54463.1| GG21520 [Drosophila erecta]
          Length = 289

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
             ++  L G  ++E+G G G LT+ L  LGA +V  I+  ++     ++        L 
Sbjct: 88  VNTTKVLLGQNILEVGCGGGLLTEHLARLGA-QVTGIDLGEKLLEAAREHLKCSSPELT 145


>gi|163955692|gb|ABY49844.1| 24-sterol C-methyltransferase [Gossypium hirsutum]
          Length = 361

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRL 97
            +      G  V+++G G G   + +       V+ I  ++       L +  +   +  
Sbjct: 116 VDLIEVKPGDRVLDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 175

Query: 98  EIIQDDALKVDFEK 111
           E++  + L++ F+ 
Sbjct: 176 EVVCGNFLEMPFKD 189


>gi|189424579|ref|YP_001951756.1| methyltransferase type 11 [Geobacter lovleyi SZ]
 gi|189420838|gb|ACD95236.1| Methyltransferase type 11 [Geobacter lovleyi SZ]
          Length = 492

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                TV+EIG G G  T+ +L   A+ +  ++   +    LK   +       +     
Sbjct: 54  ITTSSTVLEIGVGGGRWTRYMLK--AKHLYAVDYHVELLEELKLNYNYDNMSFVLNNG-- 109

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
              DF    N S           ++   ++  ++
Sbjct: 110 --YDFPGVLNQSVDFIFSFGTFVHLDVDIIKKYL 141


>gi|108800102|ref|YP_640299.1| tRNA (adenine-N(1)-)-methyltransferase [Mycobacterium sp. MCS]
 gi|119869230|ref|YP_939182.1| tRNA (adenine-N(1)-)-methyltransferase [Mycobacterium sp. KMS]
 gi|126435727|ref|YP_001071418.1| tRNA (adenine-N(1)-)-methyltransferase [Mycobacterium sp. JLS]
 gi|108770521|gb|ABG09243.1| tRNA (adenine-58-N(1)-) methyltransferase [Mycobacterium sp. MCS]
 gi|119695319|gb|ABL92392.1| tRNA (adenine-58-N(1)-) methyltransferase [Mycobacterium sp. KMS]
 gi|126235527|gb|ABN98927.1| tRNA (adenine-58-N(1)-) methyltransferase [Mycobacterium sp. JLS]
          Length = 284

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIE-KDQQFFPILKDI--- 89
             +I        G  V+E GAG G LT  LL       +V   E +D       +++   
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPQGRVTSYEVRDDHAVHAARNVETF 147

Query: 90  SSQHPNRLEIIQDDALKVDFEK----FFNISSPIRIIANLPYNI 129
             + P   +++  D    +  +      ++ +P  ++  +  N+
Sbjct: 148 FGERPANWDLVIADLNDYNGGEVDRVVLDMLAPWEVLDTVSRNL 191


>gi|120598505|ref|YP_963079.1| type 11 methyltransferase [Shewanella sp. W3-18-1]
 gi|120558598|gb|ABM24525.1| Methyltransferase type 11 [Shewanella sp. W3-18-1]
          Length = 205

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 9/137 (6%)

Query: 52  IEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKV 107
           +EIG G GN   ++    GA  V  ++ D +     +          N L     DA ++
Sbjct: 43  LEIGCGFGNGIHLIREHFGAGHVTAMDIDPEMVAAAQKRWQDSSHGLNNLHFSVADATQL 102

Query: 108 DF-EKFFNISSPIRIIANLP-YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
            F E  F+I     +  ++P +      +   +    +    +         +  R+   
Sbjct: 103 PFAEDRFDIVFNFAVFHHIPAWQTAIAEVARVLKLGGFFVIEDLYRSAICNPISRRLFEH 162

Query: 166 KNSPHYGR---LSVLTG 179
                +     L+VL  
Sbjct: 163 PQQNRFDHRELLAVLHQ 179


>gi|66820068|ref|XP_643680.1| hypothetical protein DDB_G0275359 [Dictyostelium discoideum AX4]
 gi|60471790|gb|EAL69745.1| hypothetical protein DDB_G0275359 [Dictyostelium discoideum AX4]
          Length = 462

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 19/166 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRL 97
           A+S+       V+++G G G  T  +      K+  +  +++   I    +      +R 
Sbjct: 232 ADSARITKDSLVLDVGCGVGGPTLEICQYTGCKIRGLNINKKQVGIATQRAKDLGVSDRA 291

Query: 98  EIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                DA+K+ +    F++ +      ++P     +           P    S +   Q 
Sbjct: 292 SFDHGDAMKMPYPDNTFDVVTFFESTCHMPDK---QAFIKECYRVLKPGGRMSGSEWLQC 348

Query: 157 E---------VGERITAQKNSPHYGRL----SVLTGWRTKATMMFD 189
           E           E I A  + PH G L    S++        +  D
Sbjct: 349 EKPTEKDIVQFIEPICAHHSVPHMGSLMSYRSMMESAGFYVHIAMD 394


>gi|294501335|ref|YP_003565035.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Bacillus
           megaterium QM B1551]
 gi|295706682|ref|YP_003599757.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Bacillus
           megaterium DSM 319]
 gi|294351272|gb|ADE71601.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Bacillus
           megaterium QM B1551]
 gi|294804341|gb|ADF41407.1| S-adenosylmethionine(SAM)-dependent methyltransferase [Bacillus
           megaterium DSM 319]
          Length = 213

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I E         VIE G G GNLT+ LL    +++ V+  +    P+ +    +    + 
Sbjct: 37  ILEYVADRSIGHVIEFGTGTGNLTKKLLE---KELTVVGIEP-SVPMRQLAHQKLGADVL 92

Query: 99  IIQDDALKVDFEKFFNIS 116
           +   D L+ D   F   S
Sbjct: 93  VTPGDFLQFDTSLFPAES 110


>gi|289662855|ref|ZP_06484436.1| cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 356

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +        I    + +     IL+    +    +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERYPNASITAVSNSRPQRAHILEQCRVRGLGNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQK 156
             D  AL +    F  + S         Y      + +W++     +   +    L +  
Sbjct: 186 TADVNALALPPGGFDRVVSVEMFEHMRNYRELLARVGSWLAPGGKLFVHIFCHRDLAYPF 245

Query: 157 EVG 159
           EV 
Sbjct: 246 EVA 248


>gi|257063715|ref|YP_003143387.1| putative methyltransferase [Slackia heliotrinireducens DSM 20476]
 gi|256791368|gb|ACV22038.1| putative methyltransferase [Slackia heliotrinireducens DSM 20476]
          Length = 201

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---I 89
            +++  I  + G LD   V++  AG G L    L+ GA+  +  E D++    L++   +
Sbjct: 34  ESVVSSIYSARGGLDDAVVLDAFAGSGGLGIECLSRGAKTALFYEYDRKAQRALRENIDM 93

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
                 R  I+Q D LK              ++ + PY    +++ +++ 
Sbjct: 94  LKLQAGRARIVQSDVLKRPPTVVAMPFD--VVLLDPPYAYDLQVIVDFLR 141


>gi|229134387|ref|ZP_04263200.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST196]
 gi|228649008|gb|EEL05030.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST196]
          Length = 239

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     +      KV  +EK++      KD      
Sbjct: 25  LTKQLLAQLPFRHGTNVLEIGCGTGKTAAYMTKELGYKVTAVEKNEIMIQKAKDRWLFDG 84

Query: 95  NRLEIIQDDA 104
             +++IQ D 
Sbjct: 85  LNIQLIQGDV 94


>gi|261855118|ref|YP_003262401.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Halothiobacillus neapolitanus c2]
 gi|261835587|gb|ACX95354.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Halothiobacillus neapolitanus c2]
          Length = 221

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NR 96
           +I +S        V+EIG G G  T  L  LG + V  ++    F     +  ++   +R
Sbjct: 71  RILQSLAVAPNERVLEIGTGSGFFTACLAHLG-QSVHSVDIHPDFTQSAAEKLAELNIDR 129

Query: 97  LEIIQDDAL 105
           + +   DA+
Sbjct: 130 VVLETGDAV 138


>gi|126741037|ref|ZP_01756719.1| putative sugar nucleotide processing enzyme [Roseobacter sp.
           SK209-2-6]
 gi|126717801|gb|EBA14521.1| putative sugar nucleotide processing enzyme [Roseobacter sp.
           SK209-2-6]
          Length = 389

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHP 94
             +I  S    + I  +EIG G G+  ++L   G  +V+  +  D  F       + Q P
Sbjct: 75  ADRILASVPPEEEIHYVEIGCGEGDFLRLLHERGQGRVVSAVGFDPSF-----TTAEQLP 129

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
           + + +           +   I     I+ +
Sbjct: 130 DGVVVHPC---YFTPAEITKIPPQTNIVCS 156


>gi|114775707|ref|ZP_01451275.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Mariprofundus ferrooxydans PV-1]
 gi|114553818|gb|EAU56199.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Mariprofundus ferrooxydans PV-1]
          Length = 225

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I           V+EIG G G LT ML    + +V+  E        L + +  H  +  
Sbjct: 72  IISHLALTGSERVLEIGTGTGFLTTMLAMQ-SGEVVSCEI----HEPLAESARGHLQQHG 126

Query: 99  IIQDDALKVD 108
           I     + ++
Sbjct: 127 ITNAQVVTIN 136


>gi|71083233|ref|YP_265952.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|91762337|ref|ZP_01264302.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
           family protein [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062346|gb|AAZ21349.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
           family [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718139|gb|EAS84789.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
           family protein [Candidatus Pelagibacter ubique HTCC1002]
          Length = 219

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I KKI +      G  +++IG G G L   L       VI+   D   + I K+   +  
Sbjct: 61  IAKKIIDFYKIKPGNKILDIGCGKGFLLYEL-KKQVPGVIIRGLDISSYAI-KNAKEEVK 118

Query: 95  NRLEIIQDDALKVDFEKF 112
             L+I   + L    ++F
Sbjct: 119 EYLKIGDANKLPYSDKEF 136


>gi|33599197|ref|NP_886757.1| hypothetical protein BB0208 [Bordetella bronchiseptica RB50]
 gi|33575243|emb|CAE30706.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 419

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-----GARKVIVIEKDQQFFPILKDI 89
           + ++IA+   + D  +V+E GAG G L + +L          + +++E         +  
Sbjct: 116 VARQIAQVLRATDTASVLEFGAGTGALAEGVLRALAGLDCPARYLIVEVSADLRQRQQSR 175

Query: 90  SSQHPNRLEIIQD 102
            +   +R++ +  
Sbjct: 176 LAPFGDRVQWLDQ 188


>gi|33594922|ref|NP_882565.1| hypothetical protein BPP0204 [Bordetella parapertussis 12822]
 gi|33564998|emb|CAE39945.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 419

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-----GARKVIVIEKDQQFFPILKDI 89
           + ++IA+   + D  +V+E GAG G L + +L          + +++E         +  
Sbjct: 116 VARQIAQVLRATDTASVLEFGAGTGALAEGVLRALAGLDCPARYLIVEVSADLRQRQQSR 175

Query: 90  SSQHPNRLEIIQD 102
            +   +R++ +  
Sbjct: 176 LAPFGDRVQWLDQ 188


>gi|71653380|ref|XP_815328.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880376|gb|EAN93477.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 419

 Score = 39.0 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                  V+EIGAG G L+ M   LGA+ V+ +E   +   + +  ++   N++E  +  
Sbjct: 102 HVTPETGVLEIGAGSGLLSLMAAQLGAKWVVAVEGSAEMAKLAR--ANICANKME-HKVT 158

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
            L +   +      P R     P  + + +L   +  ++   +   +     K   + I
Sbjct: 159 VLHMLSTELTLRHLPDR-----PDVMVSEILGTLLLGESALDYIADVRERLLKPTTKII 212


>gi|332981299|ref|YP_004462740.1| ribosomal protein L11 methyltransferase [Mahella australiensis 50-1
           BON]
 gi|332698977|gb|AEE95918.1| ribosomal protein L11 methyltransferase [Mahella australiensis 50-1
           BON]
          Length = 312

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 14/129 (10%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
              ++I++G G G L+     LGA+KV+ ++ D           +    +L  ++ D ++
Sbjct: 176 ADSSIIDVGCGSGVLSIAAAKLGAKKVLALDVDPVAV-----RVASENAKLNCVE-DIVE 229

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES----LTLLFQKEVGERI 162
           V      +       I  +  NI   ++   +     PP  +     +     KE  + +
Sbjct: 230 VRKNDLLDGLDVQADI--IIANIVADVIIRLLPQ--IPPRLKKPGLFIASGIIKERADDV 285

Query: 163 TAQKNSPHY 171
            A   S  +
Sbjct: 286 KAAVESMRF 294


>gi|310814902|ref|YP_003962866.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25]
 gi|308753637|gb|ADO41566.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25]
          Length = 328

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G  T+ LL  GA KVI I++D   FP+  D  +  P+R+++      ++D
Sbjct: 32  GAGGYTRDLLAAGADKVIGIDRDPSVFPLSADWRAAMPDRVDLRLGTFSEMD 83


>gi|283851218|ref|ZP_06368501.1| methyltransferase FkbM family [Desulfovibrio sp. FW1012B]
 gi|283573387|gb|EFC21364.1| methyltransferase FkbM family [Desulfovibrio sp. FW1012B]
          Length = 218

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             G  V ++GA  G  TQ  L LGAR V+  E + +    L    +  P   
Sbjct: 9  LQPGDLVFDVGANIGKSTQHYLDLGAR-VVAFEANPRLAATLCRRFAATPQAF 60


>gi|297202325|ref|ZP_06919722.1| methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197710155|gb|EDY54189.1| methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 259

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 11/118 (9%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNR 96
            + E+        V+++  G G++T  LL          ++ D     I +   +    R
Sbjct: 43  DMVEAL-VGPRPRVLDLACGTGSITARLLARFPEATSTGVDLDPALLAIAEGTFAD-DER 100

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           + ++  D          +   P ++  +    + T    +W+ ++     +  +  L 
Sbjct: 101 VTLVTAD--------LKDPHWPSKLPYDSYDAVLTATALHWLHSEPLAALYGRIAELV 150


>gi|254390959|ref|ZP_05006168.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|254393461|ref|ZP_05008601.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326445587|ref|ZP_08220321.1| ubiquinone/menaquinone biosynthesis methylase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197704655|gb|EDY50467.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197707088|gb|EDY52900.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 213

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             ++GS     V E+G GPG +T  L  LG   V  ++       + ++       R E+
Sbjct: 47  VRAAGSG---LVAELGCGPGPVTAHLRDLG-LDVFGVDLSPVLIGLARETYPDL--RFEV 100

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
              DAL +   +   I S   +I   P ++
Sbjct: 101 GSMDALDLADGQLQGIVSWYSVIHASPQDV 130


>gi|86607644|ref|YP_476406.1| cyclopropane fatty acyl phospholipid synthase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556186|gb|ABD01143.1| cyclopropane-fatty-acyl-phospholipid synthase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 379

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  IA       G+ V++IG G G   Q L      +V+ I   ++   +  +     P 
Sbjct: 152 LDLIARKLELQPGMRVLDIGCGWGGTAQYLAERYGVQVVGITVSKEQAKLASERCRGLP- 210

Query: 96  RLEIIQDD 103
            +EI  +D
Sbjct: 211 -VEIRLED 217


>gi|146276866|ref|YP_001167025.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555107|gb|ABP69720.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 403

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
             + +  G+  G  V+EIG G G   +        +V  +   +          ++    
Sbjct: 176 ASMVDRIGAKPGDHVLEIGCGWGGFAEYAAKERGLRVTGLTISRAQHDYAARRIARAGLS 235

Query: 95  NRLEIIQDD 103
           +R+EI   D
Sbjct: 236 DRVEIRLQD 244


>gi|71275664|ref|ZP_00651949.1| Conserved hypothetical protein 95 [Xylella fastidiosa Dixon]
 gi|71897792|ref|ZP_00680018.1| Conserved hypothetical protein 95 [Xylella fastidiosa Ann-1]
 gi|170729517|ref|YP_001774950.1| putative methylase [Xylella fastidiosa M12]
 gi|71163555|gb|EAO13272.1| Conserved hypothetical protein 95 [Xylella fastidiosa Dixon]
 gi|71732347|gb|EAO34401.1| Conserved hypothetical protein 95 [Xylella fastidiosa Ann-1]
 gi|167964310|gb|ACA11320.1| putative methylase [Xylella fastidiosa M12]
          Length = 208

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L G  V+++ AG G L    ++ GA + +++E+  +   +L++  ++    +++EI+Q 
Sbjct: 55  VLPGAHVLDLFAGSGALGLEAVSRGAARAVLVERHAELVVLLREQVARLGAQDQVEIVQA 114

Query: 103 DALKV 107
           DAL+ 
Sbjct: 115 DALQW 119


>gi|299133840|ref|ZP_07027034.1| Cyclopropane-fatty-acyl-phospholipid synthase [Afipia sp. 1NLS2]
 gi|298591676|gb|EFI51877.1| Cyclopropane-fatty-acyl-phospholipid synthase [Afipia sp. 1NLS2]
          Length = 388

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK--DQQFFPILKDISSQHP 94
           +++AE+     G  ++EIG G G   +        KV+ +    +Q+ F   +   +   
Sbjct: 161 RRLAEAIDLQPGHELLEIGCGWGGFAEYAAAHCGAKVVGLTISAEQRDFARARIARAGLD 220

Query: 95  NRLEIIQDD 103
           ++++I   D
Sbjct: 221 DKVDIRFQD 229


>gi|195493801|ref|XP_002094569.1| GE20131 [Drosophila yakuba]
 gi|194180670|gb|EDW94281.1| GE20131 [Drosophila yakuba]
          Length = 467

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 19/107 (17%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDL--NILKK--------IAESSGSLDGITVIEIGAGPGN 60
           ++     +I+  K +G   LLD   NI +         +     + +G  +  +G G G 
Sbjct: 249 RSPFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICILGGGDGA 308

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
           L   LL    + V+++E D        ++  Q  N+ L +I  D L+
Sbjct: 309 LLYELLKENPKHVVMLEID--------ELVMQTCNKYLNVICGDVLE 347


>gi|163791267|ref|ZP_02185682.1| hypothetical protein CAT7_05413 [Carnobacterium sp. AT7]
 gi|159873471|gb|EDP67560.1| hypothetical protein CAT7_05413 [Carnobacterium sp. AT7]
          Length = 214

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ILK+I        G+ V+E G G GNLTQ L+  G + V  +E  ++   I K      P
Sbjct: 37  ILKEIVR----RSGLNVLEFGIGTGNLTQELILAG-KWVFPVEPSEEMRKIAKTKL---P 88

Query: 95  NRLEIIQDDALKVDFE 110
           N + I   D  +    
Sbjct: 89  NEIVIYDGDMQQYPSP 104


>gi|126665870|ref|ZP_01736851.1| SAM-dependent methyltransferase [Marinobacter sp. ELB17]
 gi|126629804|gb|EBA00421.1| SAM-dependent methyltransferase [Marinobacter sp. ELB17]
          Length = 333

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHP 94
            + I + +      TV+EIG G G+   +L  L    ++ ++  +      +     ++ 
Sbjct: 157 ARLIRQRAPKKSWPTVLEIGPGDGSFLPVLSPLC-HHLVALDNSRDMLAKAQQTCIDENL 215

Query: 95  NRLEIIQD 102
           N +++I+ 
Sbjct: 216 NNVDLIEG 223


>gi|21328589|gb|AAM48596.1| hydroxyneurosporene methyltransferase, CrtF putative [uncultured
           marine proteobacterium]
          Length = 384

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 21/150 (14%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I   I ++        +++IG G G   ++      +    +        ++  I+ ++ 
Sbjct: 201 IANHILDAIKLKPQQQLLDIGGGTGTFARLAAERFPKTETAVF---DLPQVIASIAPRYH 257

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
             L+ I  +                     +P    T  L   +      P  + L   F
Sbjct: 258 GTLQTISGN----------------MFEDPIPTTFNTISLVRILHDHDDDPVDKLLARCF 301

Query: 155 QKEVG--ERITAQKNSPHYGRLSVLTGWRT 182
           +      E I A+  +   G  S+   +  
Sbjct: 302 KALPAGGELIIAEPMADTRGAESIGHTYFG 331


>gi|15805630|ref|NP_294326.1| cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase
           domain-containing protein [Deinococcus radiodurans R1]
 gi|6458301|gb|AAF10182.1|AE001918_7 cytidine/deoxycytidylate deaminase/nudix/methyltransferase domains
           protein [Deinococcus radiodurans R1]
          Length = 548

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           + S  G  V+E+G+G G  T  LL     + +++ +E D +   +  ++    P R E++
Sbjct: 391 AASKPGGRVLELGSGLGAGTAWLLAGMDASARLLTVESDSERARLTAEVLCDDP-RAEVL 449

Query: 101 QDD 103
             D
Sbjct: 450 AGD 452


>gi|15679900|ref|NP_277018.1| protein methyltransferase [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2623052|gb|AAB86378.1| possible protein methyltransferase [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 211

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 16/175 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
           A + G ++G TV ++G G G L      LGA  V  I+ D       +  + +     + 
Sbjct: 46  ARAMGDIEGKTVADLGCGTGILGIGAALLGAEMVYCIDIDSGALEAGRSAAGELGLGNIR 105

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
            I+ D    D            ++ N P+    R      +       +        + V
Sbjct: 106 FIEADIRHHD----ALPGMVDTVVQNPPFGSQER------AERGADRVFMDAAAATARTV 155

Query: 159 GERITAQKNS---PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210
                A        +Y +L      R +    F I     F   +V S  +  + 
Sbjct: 156 YSFHMAGSEDFVRNYYRKLGGTVTHRFRVE--FPIPRTYSFHRMEVASVGVVILR 208


>gi|78046984|ref|YP_363159.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78035414|emb|CAJ23059.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 357

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +        I    + +     IL+    +  + +++I
Sbjct: 127 AELADGQRILELGCGWGSLTLWMAERYPNASITAVSNSRPQRAHILEQCRVRGLSNVQVI 186

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQK 156
             D  AL +    F  + S         Y      + +W++     +   +    L +  
Sbjct: 187 TADVNALTLPSGDFDRVVSVEMFEHMRNYRDLLARVGSWLAPGGKLFVHIFCHRDLAYPF 246

Query: 157 EVG 159
           EV 
Sbjct: 247 EVA 249


>gi|22299269|ref|NP_682516.1| delta(24)-sterol C-methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22295452|dbj|BAC09278.1| delta(24)-sterol C-methyltransferase [Thermosynechococcus elongatus
           BP-1]
          Length = 328

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 14  LSHYKIIPK-KYMGQNFLLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLG 69
           L HY + P+ K   Q     ++ + ++   +G      G TV+++G G G  +++L    
Sbjct: 59  LGHYGLPPRPKDFRQ---AKVDFVHEMVRWAGLDRLPPGTTVLDVGCGIGGSSRILARDY 115

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
              V  I    +     ++++    N +    DDAL + F  
Sbjct: 116 GFHVTGITISPEQVRRARELTPAELN-VRFQLDDALALSFPD 156


>gi|83949895|ref|ZP_00958628.1| methyltransferase, UbiE/COQ5 family protein [Roseovarius
           nubinhibens ISM]
 gi|83837794|gb|EAP77090.1| methyltransferase, UbiE/COQ5 family protein [Roseovarius
           nubinhibens ISM]
          Length = 292

 Score = 39.0 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDIS 90
            N+L      +    G  V++IG G G  T+ L         V  I+       + +   
Sbjct: 46  ENVLAATLARAAPQPGEKVLDIGCGTGASTRALAEAIGPEGHVTGIDISAPLIDLARARV 105

Query: 91  SQHPNRLEIIQDDA 104
           +        ++ DA
Sbjct: 106 TGPQASF--LRADA 117


>gi|332520063|ref|ZP_08396527.1| methyltransferase small [Lacinutrix algicola 5H-3-7-4]
 gi|332044622|gb|EGI80816.1| methyltransferase small [Lacinutrix algicola 5H-3-7-4]
          Length = 237

 Score = 39.0 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVD 108
           ++IGAG G L+ ML      +VI  +E D+  +    +     P  +RL     D  +  
Sbjct: 42  LDIGAGTGVLSLMLAQRSHAEVIDALEIDESAYEQCVENFEASPWSDRLFCYHADLAEFT 101

Query: 109 FEKFFNISSPIRIIANLPYN 128
            E          II N P+ 
Sbjct: 102 EEI---EDKYDLIICNPPFY 118


>gi|258593160|emb|CBE69479.1| SAM-dependent methyltransferase [NC10 bacterium 'Dutch sediment']
          Length = 266

 Score = 39.0 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD--ISSQHPNR 96
           A+ +       V+++G G G +  +L       +++ +E         +     +    R
Sbjct: 47  AQWAAPRSTDRVLDLGCGNGVIAFLLAHRHPELRIVGLEVQPALADRARRGVHLNGLQGR 106

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +EI++ D  +   +    I+    ++ N PY
Sbjct: 107 IEIVEGDLRQA--KGLLPIAGFDMVLCNPPY 135


>gi|239979501|ref|ZP_04702025.1| O-methyltransferase [Streptomyces albus J1074]
          Length = 313

 Score = 39.0 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            K+       +G  V+EIGAG G    L    L  G+  V  ++ D       +      
Sbjct: 94  AKMLADLRVHEGDRVLEIGAGTGWNAALLAYRL--GSAHVTTVDLDPDITDSARRHLEAA 151

Query: 94  PNRLEIIQDD 103
                ++  D
Sbjct: 152 GLHPHVVTGD 161


>gi|289207359|ref|YP_003459425.1| methyltransferase [Thioalkalivibrio sp. K90mix]
 gi|288942990|gb|ADC70689.1| methyltransferase [Thioalkalivibrio sp. K90mix]
          Length = 203

 Score = 39.0 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDA 104
           L G  V+++ AG G L     + GAR+V ++E+D +    L+ +       ++ I +DD 
Sbjct: 55  LPGARVLDLYAGTGALGFEAASRGAREVWLVERDARAAAQLEANRERLGATQVHIRRDDV 114

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIG 130
            ++   +         +  + P+  G
Sbjct: 115 ARL-LGQLPEGDPFDVVFLDPPFGQG 139


>gi|195589784|ref|XP_002084629.1| GD12732 [Drosophila simulans]
 gi|194196638|gb|EDX10214.1| GD12732 [Drosophila simulans]
          Length = 420

 Score = 39.0 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 19/107 (17%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDL--NILKK--------IAESSGSLDGITVIEIGAGPGN 60
           ++     +I+  K +G   LLD   NI +         +     + +G  +  +G G G 
Sbjct: 202 RSPFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICILGGGDGA 261

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
           L   LL    + V+++E D        ++  Q  N+ L +I  D L+
Sbjct: 262 LLYELLKENPKHVVMLEID--------ELVMQTCNKYLNVICGDVLE 300


>gi|239828603|ref|YP_002951227.1| modification methylase, HemK family [Geobacillus sp. WCH70]
 gi|239808896|gb|ACS25961.1| modification methylase, HemK family [Geobacillus sp. WCH70]
          Length = 288

 Score = 39.0 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISS 91
             +L +I +       I V+++G G G +   L L   + +V  I+   +   + K  + 
Sbjct: 103 EGVLTRITQLFPGNKTIDVVDVGTGSGAIAITLALENKSLRVAAIDIAPEALEVAKRNAE 162

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +    +  I  D L+              +++N PY
Sbjct: 163 RLGADVAFICGDLLQ---PLVEASRKVDVVVSNPPY 195


>gi|152965439|ref|YP_001361223.1| methyltransferase type 11 [Kineococcus radiotolerans SRS30216]
 gi|151359956|gb|ABS02959.1| Methyltransferase type 11 [Kineococcus radiotolerans SRS30216]
          Length = 256

 Score = 39.0 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            ++ E      G  V+E+GAG G  T  L+  GAR V  +E       +L+         
Sbjct: 27  DRLRELGLLRSGARVVELGAGSGLATAPLVAAGAR-VTAVEPGPALAGLLRRRLPA---- 81

Query: 97  LEIIQ--DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           + + +   +A + D    F+++     +     ++    L  W+  D     +   
Sbjct: 82  VTVHETTAEAARFD-PGSFDLAVAATAVHWFDLDVVLPALHGWLRPDGALVVFRHA 136


>gi|313243451|emb|CBY42202.1| unnamed protein product [Oikopleura dioica]
          Length = 388

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQD 102
             +G   +E+GAG G L++ +  +  R   +I  D+  F   K+ +  +  R   E ++ 
Sbjct: 174 LANGNCFLELGAGTGGLSEKVAEVLDRSSFII-VDRGSFRKKKENAFLNEGRDAFERVKG 232

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           D    D +     +  I  IA       T L     +           +    K   +  
Sbjct: 233 DIADFDPKLLLESNEKIICIAKHLCGSATDLAIQCATRIVNFGGILVASCCHHKCTWQSF 292

Query: 163 TAQ-------KNSPHYGRLSVLTGWRT 182
           +++       K++  +  L++L+ W T
Sbjct: 293 SSREVLSEHFKSAKRFRLLTLLSSWFT 319


>gi|313234078|emb|CBY19655.1| unnamed protein product [Oikopleura dioica]
          Length = 388

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQD 102
             +G   +E+GAG G L++ +  +  R   +I  D+  F   K+ +  +  R   E ++ 
Sbjct: 174 LANGNCFLELGAGTGGLSEKVAEVLDRSSFII-VDRGSFRKKKENAFLNEGRDAFERVKG 232

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           D    D +     +  I  IA       T L     +           +    K   +  
Sbjct: 233 DIADFDPKLLLESNEKIICIAKHLCGSATDLAIQCATRIVNFGGILVASCCHHKCTWQSF 292

Query: 163 TAQ-------KNSPHYGRLSVLTGWRT 182
           +++       K++  +  L++L+ W T
Sbjct: 293 SSREVLSEHFKSAKRFRLLTLLSSWFT 319


>gi|268324923|emb|CBH38511.1| conserved hypothetical protein, methyltransferase family
           [uncultured archaeon]
          Length = 263

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 15/162 (9%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           +IL++I +     D  TV+++GAG G     L       V V+E  ++    L   + ++
Sbjct: 46  SILERIYKIFDFQDESTVLDVGAGTGAFAIPLAK-NVSAVTVVEPSKEMAQYLMKSADRN 104

Query: 94  P-NRLEII---QDDALKVDFEKFFNISSPIRIIANLPYNIGTR-LLFNWISADTWPPFWE 148
             N +E+I    +D  + D  ++      + + A   Y +  +  L   +       F  
Sbjct: 105 GLNNIEVITKRWEDISRDDLREY-----NVVLAARSYYMLDIKSALLKMLDVTKDILFLV 159

Query: 149 SLTLLFQKE-VGERITAQKNSPHYGRL-SVLTGW--RTKATM 186
           S    ++ E + +       +P Y  L +VL          +
Sbjct: 160 SHVANYEFEDINKNFNDYAPAPDYIYLYNVLYQMKIYANVEI 201


>gi|302558468|ref|ZP_07310810.1| methyltransferase [Streptomyces griseoflavus Tu4000]
 gi|302476086|gb|EFL39179.1| methyltransferase [Streptomyces griseoflavus Tu4000]
          Length = 256

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNR 96
            + E+        V+++  G G++T  LL          ++ D     I +   +    R
Sbjct: 40  DMVEAL-VGTAPRVLDLACGTGSITARLLDRFPDATSTGVDLDPALLAIAEGTFAG-DGR 97

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           +  +  D          +   P  +  +    + T    +W+  +     +
Sbjct: 98  VTFVTAD--------LKDPDWPAALPHDSYDAVLTATALHWLHREPLADLY 140


>gi|240141547|ref|YP_002966027.1| putative protein-L-isoaspartate O-methyltransferase
           [Methylobacterium extorquens AM1]
 gi|240011524|gb|ACS42750.1| putative protein-L-isoaspartate O-methyltransferase
           [Methylobacterium extorquens AM1]
          Length = 216

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ ++     G   +++G G G    +L  LGA +V+ +E D       ++    
Sbjct: 68  PMLLARLIQALKIRPGTRALDVGTGYGYGAAVLRQLGA-EVVALESDPDLIGAARERLGD 126

Query: 93  HPNRLE 98
             N ++
Sbjct: 127 TVNLVQ 132


>gi|169824475|ref|YP_001692086.1| ribosomal protein L11 methyltransferase [Finegoldia magna ATCC
           29328]
 gi|167831280|dbj|BAG08196.1| ribosomal protein L11 methyltransferase [Finegoldia magna ATCC
           29328]
          Length = 307

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L +LN++ KI            ++IG G G L+ +   LGA++V   + D     I   +
Sbjct: 163 LQELNLIDKIV-----------LDIGCGSGILSVVSSKLGAKEVFATDIDP--LAIEATL 209

Query: 90  SSQHPNRLEIIQD 102
            + + N++  I  
Sbjct: 210 ENANLNKISNINA 222


>gi|297619682|ref|YP_003707787.1| RNA methylase-like protein [Methanococcus voltae A3]
 gi|297378659|gb|ADI36814.1| RNA methylase-like protein [Methanococcus voltae A3]
          Length = 271

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPN 95
           + I  +        V ++G G G L  M     A+KV  IE D        K+I +   +
Sbjct: 32  EAIVNTI--TKDDIVFDLGTGSGIL-AMFAGKKAKKVYAIELDPITAYYTDKNIKTNDFD 88

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRII 122
            +++++ DA + +F+          +I
Sbjct: 89  NIKLVEADASEYNFKDENGNKEQADVI 115


>gi|158316647|ref|YP_001509155.1| tRNA (adenine-N(1)-)-methyltransferase [Frankia sp. EAN1pec]
 gi|158112052|gb|ABW14249.1| tRNA (adenine-N(1)-)-methyltransferase [Frankia sp. EAN1pec]
          Length = 358

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD 88
             +I   +    G  V+E GAG G L+  LL       +++  E+   F  + + 
Sbjct: 101 AAQIVMYADVFPGAQVLEAGAGSGALSCALLRAVGDGGRLVSYERRPDFAEVARR 155


>gi|153876544|ref|ZP_02003810.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Beggiatoa
           sp. PS]
 gi|152066992|gb|EDN66190.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Beggiatoa
           sp. PS]
          Length = 220

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR- 96
           +I ++       TV+EIG G G LT  LL    + V  ++  ++F     D  +    + 
Sbjct: 71  RILQTLMLHANDTVLEIGTGSGYLT-ALLAKLVKHVDSVDIFEEFVTTAADKLNALNIKN 129

Query: 97  LEIIQDDA 104
           + +   DA
Sbjct: 130 VSLETGDA 137


>gi|121534803|ref|ZP_01666623.1| ribosomal protein L11 methyltransferase [Thermosinus
           carboxydivorans Nor1]
 gi|121306598|gb|EAX47520.1| ribosomal protein L11 methyltransferase [Thermosinus
           carboxydivorans Nor1]
          Length = 312

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPN 95
           +I E      G  V ++G G G L  +   LGA  V  ++ D     +  + +S     +
Sbjct: 165 RILEDV-IKPGDVVFDVGTGSGILAVVAAKLGAGAVYAVDLDPVAVNVAVENASVNGVSH 223

Query: 96  RLEIIQDDALK 106
            +++ Q D L 
Sbjct: 224 VVKVAQGDLLT 234


>gi|327193150|gb|EGE60060.1| Cyclopropane-fatty-acyl-phospholipid synthase [Rhizobium etli
           CNPAF512]
          Length = 448

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 20/123 (16%)

Query: 1   MTMNNKSHSLKTILSHYKI----------------IPKKYMGQNFLLDLNIL--KKIAES 42
           M  N K+ S + I +HY +                      G N L        + +A++
Sbjct: 168 MNANTKAGSKRNISAHYDLGNDFYRQWLDPSMTYSSALYSTGANDLQSAQNAKYRALADA 227

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEII 100
           +G   G  V+EIG G G   +   +    KV  +   ++     ++    +   +R+E  
Sbjct: 228 TGIAPGDHVLEIGCGWGGFAEFAASELNCKVTGLTISREQLAFAEERIRKAGLDDRVEFR 287

Query: 101 QDD 103
             D
Sbjct: 288 FQD 290


>gi|294146887|ref|YP_003559553.1| putative DNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292677304|dbj|BAI98821.1| putative DNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 478

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 9/114 (7%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y I P K  G  F+    I  ++ E +    G  V+E  AG   L       GA  V  +
Sbjct: 293 YHITPAKNFGA-FMTSPEIAAQVIEHARISKGQRVLEPSAGKAALASAARNAGAD-VTCV 350

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           E    F   L+ I          I+ D L +D   +        +I N P++ G
Sbjct: 351 ELQPGFAHELRVIHGFADA----IEGDFLALDPAHYAPFD---AVIMNPPFDRG 397


>gi|242310513|ref|ZP_04809668.1| methyltransferase small [Helicobacter pullorum MIT 98-5489]
 gi|239522911|gb|EEQ62777.1| methyltransferase small [Helicobacter pullorum MIT 98-5489]
          Length = 230

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 ++E+G+G G L  +        +++IEK+ + + + +     +  + E++  D 
Sbjct: 27  LKKHQKILEVGSGSGVLGMLCARDVEIDLMMIEKNPKMWELCQQNLRVNKIKAELLNGDF 86

Query: 105 LKVDFEKFFNISSPIRIIANLPYN 128
           L+ DF           I++N P+ 
Sbjct: 87  LQYDFLDLKFDC----ILSNPPFY 106


>gi|163784792|ref|ZP_02179584.1| hypothetical protein HG1285_11897 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879938|gb|EDP73650.1| hypothetical protein HG1285_11897 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 347

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
            V++IG G G   ++LL  G   V+ IE D+    ILK         L +++ DA++ 
Sbjct: 181 PVLDIGCGRGEFLKLLLEKGIN-VLGIEIDENLVEILK------SQDLPVVKSDAIEF 231


>gi|152982213|ref|YP_001352379.1| hypothetical protein mma_0689 [Janthinobacterium sp. Marseille]
 gi|151282290|gb|ABR90700.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 276

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 47  DGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDD 103
               ++++G G G LT+         +V  ++ +     I   +    PN  RL +I+ D
Sbjct: 86  KPQHIVQLGLGTGALTKFSYKRFPEARVTAVDLNPSVITICASMFKLPPNDERLTVIEMD 145

Query: 104 ALKV 107
           AL+ 
Sbjct: 146 ALEY 149


>gi|149178210|ref|ZP_01856804.1| probable cyclopropane-fatty-acyl-phospholipid synthase
           [Planctomyces maris DSM 8797]
 gi|148842992|gb|EDL57361.1| probable cyclopropane-fatty-acyl-phospholipid synthase
           [Planctomyces maris DSM 8797]
          Length = 454

 Score = 39.0 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
             +    G   G TV+E G G G L   +      KV      ++     +D + Q    
Sbjct: 208 DHVCRKVGLKTGDTVVEAGCGWGALALHMARYYGVKVRAFNISREQLSYARDRARQEGLS 267

Query: 95  NRLEIIQDD 103
            ++E ++DD
Sbjct: 268 QQVEFVEDD 276


>gi|316932468|ref|YP_004107450.1| type 11 methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315600182|gb|ADU42717.1| Methyltransferase type 11 [Rhodopseudomonas palustris DX-1]
          Length = 341

 Score = 39.0 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 45/127 (35%), Gaps = 9/127 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR----KVIVIEKDQQFFPILKDISSQHPN 95
            E +   DG +++E+G G G+L+  +           V      +++    ++ +++   
Sbjct: 109 IEHADLRDGQSILELGCGWGSLSLAMAEQFPHARIVSVSNSVSQREYIE--RETAARRLM 166

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            L ++  D    +  + F+    +  +    + +  R L  WI     P     + +   
Sbjct: 167 NLRVVTSDMNVFEPHEKFD---RVVSVEMFEHMMNWRKLMGWIRGWLKPDGLFFMHVFSH 223

Query: 156 KEVGERI 162
           +      
Sbjct: 224 RRGAYLF 230


>gi|242238321|ref|YP_002986502.1| protein-L-isoaspartate O-methyltransferase [Dickeya dadantii
           Ech703]
 gi|242130378|gb|ACS84680.1| protein-L-isoaspartate O-methyltransferase [Dickeya dadantii
           Ech703]
          Length = 208

 Score = 39.0 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  R V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLHLTPESRVLEIGTGSGYQTAILAHL-VRHVFSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I + L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWASKGPFDAIIVTAAPPEIPSALMEQL 162


>gi|296125174|ref|YP_003632426.1| methyltransferase type 12 [Brachyspira murdochii DSM 12563]
 gi|296016990|gb|ADG70227.1| Methyltransferase type 12 [Brachyspira murdochii DSM 12563]
          Length = 619

 Score = 39.0 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                 ++IEIGAGPG +T +L      KV  +E   +   I    +S++ N LEI+  +
Sbjct: 66  NFKPNSSIIEIGAGPGAITGVLCE-KLNKVTAVELSYRRAKINSVRNSKYKN-LEIMVGN 123

Query: 104 ALKVDFEKFFN 114
              ++F++ F+
Sbjct: 124 LNDMEFDRKFD 134


>gi|126465278|ref|YP_001040387.1| methyltransferase-like protein [Staphylothermus marinus F1]
 gi|126014101|gb|ABN69479.1| methyltransferase-like protein [Staphylothermus marinus F1]
          Length = 292

 Score = 39.0 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 38  KI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--- 93
           +I A ++    G  V++   G G         GAR +  +E D     I +     H   
Sbjct: 127 RIKARTAKVRKGDRVLDTCMGLGYTAIHSYLRGARIIYTVEIDPNIIWIAEHNPWSHGLS 186

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            N + IIQ +   +D  ++F  +   +II + P
Sbjct: 187 NNGITIIQGNI--IDVIQYFEENYFDKIIHDPP 217


>gi|94497398|ref|ZP_01303969.1| phospholipid N-methyltransferase protein [Sphingomonas sp. SKA58]
 gi|94423261|gb|EAT08291.1| phospholipid N-methyltransferase protein [Sphingomonas sp. SKA58]
          Length = 209

 Score = 39.0 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ 92
           + + + E      G  V+E+G G G  T+ +L  G  A  + V+E +  F   L+     
Sbjct: 49  LARLMVEQIDP-AGGRVLELGGGTGVFTRAILETGLPANHLEVVEINPAFARGLRRHFPS 107

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
               + +++  A  V             +++ LP
Sbjct: 108 ----VSVLETPAQIVSTATAGEPGDYQLVVSGLP 137


>gi|254522241|ref|ZP_05134296.1| cyclopropane-fatty-acyl-phospholipid synthase [Stenotrophomonas sp.
           SKA14]
 gi|219719832|gb|EED38357.1| cyclopropane-fatty-acyl-phospholipid synthase [Stenotrophomonas sp.
           SKA14]
          Length = 416

 Score = 39.0 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           L +I +      G  V+EIG G G       T     V       +   +  +   ++  
Sbjct: 176 LDRICQQLRLSPGDRVVEIGTGWGGFAVHAATHYGCHVTTTTISAEQHALAAERVQAAGL 235

Query: 94  PNRLEIIQDD 103
            +R+ ++  D
Sbjct: 236 QDRVTLLMQD 245


>gi|21242125|ref|NP_641707.1| hypothetical protein XAC1372 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107536|gb|AAM36243.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 356

 Score = 39.0 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +        I    + +     IL+    +  + +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERYPNASITAVSNSRPQRAHILEQCRVRGLSNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQK 156
             D  AL +    F  + S         Y      + +W++     +   +    L +  
Sbjct: 186 TADVNALTLPSGDFDRVVSVEMFEHMRNYRDLLARVGSWLAPGGKLFVHIFCHRDLAYPF 245

Query: 157 EVG 159
           EV 
Sbjct: 246 EVA 248


>gi|71665291|ref|XP_819617.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884926|gb|EAN97766.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 419

 Score = 39.0 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                  V+EIGAG G L+ M   LGA+ V+ +E   +   + +  ++   N++E  +  
Sbjct: 102 HVTPETGVLEIGAGSGLLSLMAAQLGAKWVVAVEGSAEMANLAR--ANICANKME-HKVT 158

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
            L +   +      P R     P  + + +L   +  ++   +   +     K   + I
Sbjct: 159 VLHMLSTELTLRHLPDR-----PDVMVSEILGTLLLGESALDYIADVRERLLKPTTKII 212


>gi|332535432|ref|ZP_08411219.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035156|gb|EGI71668.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 420

 Score = 39.0 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 17/150 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           LK+I E        +VIEIG G G       T     V       +    + +  S+   
Sbjct: 179 LKRICEQVELQKNDSVIEIGTGWGAFAIYAATHYDCHVTTTTISDEQHDYVANKISELGL 238

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
             +I     LK+D+ +       +  I               +  +  P F+     L +
Sbjct: 239 ESKITL---LKLDYRQLKGKYDKLVSIEM----------IEAVGHEYLPSFFTQCGELLK 285

Query: 156 KEVGERITA----QKNSPHYGRLSVLTGWR 181
            +    I A     +   HY + S      
Sbjct: 286 DDGAMLIQAITIGDQRYKHYLKNSDFIQQY 315


>gi|291277312|ref|YP_003517084.1| DNA methylase [Helicobacter mustelae 12198]
 gi|290964506|emb|CBG40358.1| possible DNA methylase [Helicobacter mustelae 12198]
          Length = 217

 Score = 39.0 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           +EI AG G++    L+ GA+ VI  EKD + F IL+    Q   +        +K +   
Sbjct: 62  VEIFAGTGSIGIEALSRGAKSVIFFEKDPEAFAILRKNIEQIQQK-----AQKMKKEISV 116

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
             N+     ++        +  L   +  D   P  E+   +++K
Sbjct: 117 ECNLGDSFFLLPQFLKQNTSNPLI--LFFDPPFPIRENCAEIYEK 159


>gi|241258883|ref|YP_002978767.1| protein-L-isoaspartate O-methyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240863353|gb|ACS61016.1| protein-L-isoaspartate O-methyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 247

 Score = 39.0 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E +    G  V+E+G G G     L++  AR V  IE+ ++     K+   +
Sbjct: 63  PFIVALMLEKANLNAGDKVLEVGTGSGY-ASALISRIARYVYSIERHEKLALEAKERFEK 121

Query: 93  HPNR-LEIIQDD 103
              R +++   D
Sbjct: 122 LGYRNIDVRVGD 133


>gi|282880025|ref|ZP_06288747.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306139|gb|EFA98177.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
          Length = 478

 Score = 39.0 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
             T++E   G GN+   L   GA +VI  EKD+    +L         + E+I DD L V
Sbjct: 29  EKTILEPSTGSGNIVSWLKENGAGEVIACEKDKTLQKLLA-------GKCELIADDFLSV 81

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
             ++  +++    I+ N P++   + + +  +     
Sbjct: 82  TSDQVSHVN---YIVMNPPFSDAVKHIKHAFNIAPAG 115


>gi|158334062|ref|YP_001515234.1| methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304303|gb|ABW25920.1| methyltransferase, putative [Acaryochloris marina MBIC11017]
          Length = 261

 Score = 39.0 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +   I     +    + +E G G G L  + L      V  I+  Q+     ++    
Sbjct: 26  EEVADYILALVHANPDTSFLEPGVGTG-LNVLPLVKRGYSVTGIDISQEMLNQFRNKLKG 84

Query: 93  HPNRLEIIQDDA 104
           +P  L +IQ DA
Sbjct: 85  NPENLTLIQADA 96


>gi|148654736|ref|YP_001274941.1| precorrin-6y C5,15-methyltransferase subunit CbiE [Roseiflexus sp.
           RS-1]
 gi|148566846|gb|ABQ88991.1| precorrin-6Y C5,15-methyltransferase (decarboxylating) [Roseiflexus
           sp. RS-1]
          Length = 408

 Score = 39.0 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 34  NILKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILK 87
            I K+              G T+ +IGAG G++           +V  IE+ ++F   ++
Sbjct: 235 QITKREVRLLSLAELALQPGETLWDIGAGSGSVGIEAARACPTARVYAIERRERFVAHMQ 294

Query: 88  DISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRII 122
           +   + P   L +I  +A     E    +  P  I 
Sbjct: 295 ENLRRFPAPNLRVIHGEA----PEACVGLPDPHAIF 326


>gi|104781509|ref|YP_608007.1| trans-aconitate methyltransferase [Pseudomonas entomophila L48]
 gi|95110496|emb|CAK15204.1| putative trans-aconitate methyltransferase [Pseudomonas entomophila
           L48]
          Length = 258

 Score = 39.0 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ 92
             ++ +  +          ++G GPGN T++LL      +V  ++ D       +     
Sbjct: 17  RAVRDLLAAVPPRPVRHATDLGCGPGNSTEVLLQRHPDAQVTALDSDPDMIDKARQRPRL 76

Query: 93  HPNRLEIIQDDA 104
              R+     D 
Sbjct: 77  SVPRVRCEIADI 88


>gi|332708391|ref|ZP_08428368.1| decarboxylating precorrin-6Y C5,15-methyltransferase, CbiT subunit
           [Lyngbya majuscula 3L]
 gi|332352794|gb|EGJ32357.1| decarboxylating precorrin-6Y C5,15-methyltransferase, CbiT subunit
           [Lyngbya majuscula 3L]
          Length = 200

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NR 96
           I  +        + +IGAG G +   +  L  + ++I +E+D++   +++    +     
Sbjct: 35  IISALRLGSQDRLWDIGAGTGTIPVEIGLLCPKSEIIAVERDEEVANLIRHNCDRFNVTN 94

Query: 97  LEIIQDDA 104
           +E+I+ +A
Sbjct: 95  VEVIEGNA 102


>gi|325282833|ref|YP_004255374.1| Methyltransferase type 11 [Deinococcus proteolyticus MRP]
 gi|324314642|gb|ADY25757.1| Methyltransferase type 11 [Deinococcus proteolyticus MRP]
          Length = 247

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 43  SGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +G  +G    V+E+GAG G ++  L   G   V  +E   +     +  + +    +  I
Sbjct: 25  AGLAEGEAGRVLEVGAGTGRVSCFLARRGVD-VTGLEPSARMLAKARARAEESRVDVTWI 83

Query: 101 QDDALKVDFEKFFNI 115
           Q DA  +  E+ F++
Sbjct: 84  QGDAAGLRSEERFDL 98


>gi|281365311|ref|NP_001163029.1| CG9249, isoform B [Drosophila melanogaster]
 gi|272407123|gb|ACZ94315.1| CG9249, isoform B [Drosophila melanogaster]
          Length = 289

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             ++  L G  ++E+G G G LT+ L  LGA +V  I+  ++     ++        L
Sbjct: 88  VNTTKVLLGQNILEVGCGGGLLTEHLARLGA-QVAGIDLGEKLIEAAREHLKCSSPEL 144


>gi|227821975|ref|YP_002825946.1| probable protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sinorhizobium fredii NGR234]
 gi|227340975|gb|ACP25193.1| probable protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sinorhizobium fredii NGR234]
          Length = 223

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I   K + Q F++       + +         V+EIG G G  T +L  L A +V  +E 
Sbjct: 69  IGFDKTVSQPFMV-----ALMTDLLAPQPDEAVLEIGTGLGYQTAILAEL-AGQVWSVEI 122

Query: 79  DQQFFPILKDISSQHP-NRLEIIQDD 103
            ++F    + +  +   + + I   D
Sbjct: 123 IEEFATHAEALLHRLGLSNVGIRVGD 148


>gi|261340876|ref|ZP_05968734.1| SAM-dependent methyltransferase [Enterobacter cancerogenus ATCC
           35316]
 gi|288317307|gb|EFC56245.1| SAM-dependent methyltransferase [Enterobacter cancerogenus ATCC
           35316]
          Length = 245

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 18/131 (13%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNIL-----KKIA--ESSGSLDGITVIEIGAGPGN 60
             LK  L       K    Q F+             I     +   +   +++IG G G 
Sbjct: 2   SQLKAQLRRDGFTFK----QFFVAHDRCAMKVGTDAILLGAWAPVAEATRILDIGTGSGL 57

Query: 61  LTQMLLTLGARKVI--VIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNIS 116
           L  ML       V    +E D Q      + +++ P   R+ +   D L    E+    +
Sbjct: 58  LALMLAQRTKNHVTIDAVELDAQAAGQASENAAESPWAERINVKCADVLAWAPEQ---TA 114

Query: 117 SPIRIIANLPY 127
               I++N PY
Sbjct: 115 RYDLIVSNPPY 125


>gi|225867797|ref|YP_002743745.1| ribosomal protein L11 methyltransferase [Streptococcus equi subsp.
           zooepidemicus]
 gi|259534580|sp|C0MF82|PRMA_STRS7 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|225701073|emb|CAW97890.1| ribosomal protein L11 methyltransferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 317

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA++V   + D     + KD    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEVFAYDLDDVAVRVAKDNIALNQATDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|254430542|ref|ZP_05044245.1| precorrin decarbocylase [Cyanobium sp. PCC 7001]
 gi|197624995|gb|EDY37554.1| precorrin decarbocylase [Cyanobium sp. PCC 7001]
          Length = 209

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLE 98
                     V ++G G G L   +  L  R +V  +E+D +   +L+    +     L 
Sbjct: 47  AHLRPRADSLVWDVGGGTGALALEIARLMPRGQVHTLERDPEAIALLEQNRQRFGITNLH 106

Query: 99  IIQDDA 104
           I    A
Sbjct: 107 IHAGAA 112


>gi|195978885|ref|YP_002124129.1| ribosomal protein L11 methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225871293|ref|YP_002747240.1| ribosomal protein L11 methyltransferase [Streptococcus equi subsp.
           equi 4047]
 gi|226710116|sp|B4U5A5|PRMA_STREM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254783314|sp|C0M9U4|PRMA_STRE4 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|195975590|gb|ACG63116.1| ribosomal protein L11 methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700697|emb|CAW95301.1| ribosomal protein L11 methyltransferase [Streptococcus equi subsp.
           equi 4047]
          Length = 317

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA++V   + D     + KD    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEVFAYDLDDVAVRVAKDNIALNQATDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|170699822|ref|ZP_02890854.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia ambifaria IOP40-10]
 gi|170135274|gb|EDT03570.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia ambifaria IOP40-10]
          Length = 218

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISS 91
             +  ++ +         V+ IGAG G LT  L       V  +E D        D + +
Sbjct: 64  PRVEARMLQELAVKKHENVLVIGAGSGYLT-ALFAHRTLHVTAVEIDPAIAKFAADNLRN 122

Query: 92  QHPNRLEIIQDD 103
                 E++  D
Sbjct: 123 DGVTNAEVVLGD 134


>gi|167569910|ref|ZP_02362784.1| Methyltransferase type 11 [Burkholderia oklahomensis C6786]
          Length = 256

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 46/171 (26%), Gaps = 25/171 (14%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
                  G  ++EIG G G  ++ +         ++  D      L  +     + + ++
Sbjct: 35  RFLRPSPGEKILEIGGGSGYFSRAISAALGPSGRLVVTDP-SIEQLDALRGAPDSNIRVV 93

Query: 101 Q--DDALKVDFEKFFNISSPIRIIANLPYNIGTR------------LLFNWISADTWPPF 146
           Q   DAL +D   F  + S   I                       ++++  +      +
Sbjct: 94  QQAADALHLDTRDFDAVWSRGAIHHVTDKTSAFAACARHVRPGARLVIYDIFAGTPLARY 153

Query: 147 WESL----------TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           ++                 +E  + + A           V   W   +   
Sbjct: 154 FDGFIAKSCSTGHEVAFLSEEFAKTLCALTGWSEPRFCEVTVPWEFDSRKA 204


>gi|111225687|ref|YP_716481.1| putative O-methyltransferase [Frankia alni ACN14a]
 gi|111153219|emb|CAJ64969.1| Putative Protein; putative O-methyltransferase [Frankia alni
           ACN14a]
          Length = 415

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQ----QFFPIL 86
             I  ++ E +G   G++V+EIG G G    +L  +   + +V+ ++ D     +   +L
Sbjct: 82  PFIQAQMIEQAGLGPGMSVLEIG-GGGFNAALLAEVVGPSGRVVSVDIDSEVTDRASALL 140

Query: 87  KDISSQHPNRLEIIQDDA 104
           +  ++ +  R+ +++ DA
Sbjct: 141 E--ATGYGGRVTVVRADA 156


>gi|17561380|ref|NP_504248.1| Phosphoethanolamine MethyTransferase family member (pmt-2)
           [Caenorhabditis elegans]
 gi|1458245|gb|AAB04824.1| Hypothetical protein F54D11.1 [Caenorhabditis elegans]
          Length = 437

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 15/145 (10%)

Query: 25  MGQNFLL----DLNILKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            G NF+     D N+  KI +  G    G T+++IG G G   + +       V  I+  
Sbjct: 199 FGVNFISPGGYDENL--KIIKRFGDFKPGQTMLDIGVGIGGGARQVADEFGVHVHGIDLS 256

Query: 80  QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
                I L+ +  +  +R++    DAL     +F + S       +   +I         
Sbjct: 257 SNMLAIALERLHEEKDSRVKYSITDALVY---QFEDNSFDYVFSRDCIQHI--PDTEKLF 311

Query: 139 SA--DTWPPFWESLTLLFQKEVGER 161
           S       P  + L  ++ K  GE+
Sbjct: 312 SRIYKALKPGGKVLITMYGKGYGEQ 336


>gi|60677893|gb|AAX33453.1| RE17490p [Drosophila melanogaster]
          Length = 297

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             ++  L G  ++E+G G G LT+ L  LGA +V  I+  ++     ++        L
Sbjct: 96  VNTTKVLLGQNILEVGCGGGLLTEHLARLGA-QVAGIDLGEKLIEAAREHLKCSSPEL 152


>gi|24585589|ref|NP_610092.2| CG9249, isoform A [Drosophila melanogaster]
 gi|22946973|gb|AAF53967.3| CG9249, isoform A [Drosophila melanogaster]
          Length = 310

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             ++  L G  ++E+G G G LT+ L  LGA +V  I+  ++     ++        L
Sbjct: 88  VNTTKVLLGQNILEVGCGGGLLTEHLARLGA-QVAGIDLGEKLIEAAREHLKCSSPEL 144


>gi|317123953|ref|YP_004098065.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Intrasporangium calvum DSM 43043]
 gi|315588041|gb|ADU47338.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Intrasporangium calvum DSM 43043]
          Length = 412

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 31  LDLNILKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQ 80
            D  + K+I  ++         G  + ++GAG G++         R +V  +E+DQ
Sbjct: 227 HDGQLTKRIIRAAALAHLAPQPGDVMWDLGAGAGSVGIEFARQHPRIRVYAVERDQ 282


>gi|315231161|ref|YP_004071597.1| 2-heptaprenyl-1/4-naphthoquinone methyltransferase [Thermococcus
           barophilus MP]
 gi|315184189|gb|ADT84374.1| 2-heptaprenyl-1/4-naphthoquinone methyltransferase [Thermococcus
           barophilus MP]
          Length = 195

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP--NRLEI 99
               G  V+EIG G G+  + +  L  +  KV  I+       + +    +    +R+E+
Sbjct: 2   DIKKGEIVLEIGFGTGHCLKKMAELVGKEGKVYGIDISSGMLEVSRKRLEKAGLLDRVEL 61

Query: 100 IQDDALKVDFEK 111
              DA K+ +E 
Sbjct: 62  YCGDASKLPYED 73


>gi|311107034|ref|YP_003979887.1| cyclopropane-fatty-acyl-phospholipid synthase 1 [Achromobacter
           xylosoxidans A8]
 gi|310761723|gb|ADP17172.1| cyclopropane-fatty-acyl-phospholipid synthase 1 [Achromobacter
           xylosoxidans A8]
          Length = 393

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L+ I       +G T+++IG G G L +        KV  +   ++   + ++     P 
Sbjct: 166 LEMICRKLQLREGETLLDIGCGWGGLARFAAERYGVKVTGVTVSKEQLALAQERVKGLP- 224

Query: 96  RLEIIQDD 103
            ++++  D
Sbjct: 225 -VQLLLQD 231


>gi|242046882|ref|XP_002461187.1| hypothetical protein SORBIDRAFT_02g042540 [Sorghum bicolor]
 gi|241924564|gb|EER97708.1| hypothetical protein SORBIDRAFT_02g042540 [Sorghum bicolor]
          Length = 555

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 24  YMGQNFLLDLNILKKIAE-----SS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           Y GQ  L   N+L+         ++        +G  V+++GAG G L+      GAR V
Sbjct: 171 YYGQ-LLHQQNMLQDFVRTGTYYAAVMENRSDFEGRIVVDVGAGSGILSLFAAQAGARHV 229

Query: 74  IVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNI 115
             +E   +     + + S +P+   R+ +I+    +V+  +  +I
Sbjct: 230 YAVEA-SEMAEHAQRLISGNPSLGQRITVIKGKVEEVELPEKADI 273


>gi|288940675|ref|YP_003442915.1| Cyclopropane-fatty-acyl-phospholipid synthase [Allochromatium
           vinosum DSM 180]
 gi|288896047|gb|ADC61883.1| Cyclopropane-fatty-acyl-phospholipid synthase [Allochromatium
           vinosum DSM 180]
          Length = 402

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            E+     G  V+++G G G+ T+     G  +V  +   ++    L ++  +      +
Sbjct: 171 IEACRLKPGERVLDVGGGWGSFTEQAGLRGI-QVTSLTISRESAAFLTNLIDRRQLPCRV 229

Query: 100 IQDDALKVDFEKFFN 114
           +  D L     + ++
Sbjct: 230 VNQDFLAYASPQPYD 244


>gi|256420315|ref|YP_003120968.1| methyltransferase type 12 [Chitinophaga pinensis DSM 2588]
 gi|256035223|gb|ACU58767.1| Methyltransferase type 12 [Chitinophaga pinensis DSM 2588]
          Length = 242

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 37  KKIAESSG--SLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ--QFFPILKDISS 91
             I + S     D     EIG     LT+ L      + V +I  D+        K+  S
Sbjct: 47  DLIVKLSDFFLSDDSVCYEIGCSTAELTKQLAINCKEKDVEIIGVDREADMISAAKEKCS 106

Query: 92  QHPNRLEIIQDDALKVDFEK 111
            +P ++  I DD L +D +K
Sbjct: 107 AYP-QVSFICDDILDIDLKK 125


>gi|254169081|ref|ZP_04875918.1| methylase, putative [Aciduliprofundum boonei T469]
 gi|197621920|gb|EDY34498.1| methylase, putative [Aciduliprofundum boonei T469]
          Length = 165

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
               G  V+E+G G G +       G+  V+ ++ D+     L++ +     ++E    D
Sbjct: 4   NIRCGKRVLEVGTGNGAIAIECAKSGS-SVLAVDIDKDAVEKLREEAKIKNLKIETRVSD 62

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
             +    K+        +I N PY  G       +       + + + L F  +V  +  
Sbjct: 63  LFENVDGKY------DTLIFNPPYLPGNPKDLKDLQWAGGGKYGDEVILKF-LDVAWKYL 115

Query: 164 AQKNSPHYGRLS 175
           A      Y  LS
Sbjct: 116 ADDGEI-YIILS 126


>gi|189461316|ref|ZP_03010101.1| hypothetical protein BACCOP_01966 [Bacteroides coprocola DSM 17136]
 gi|189431845|gb|EDV00830.1| hypothetical protein BACCOP_01966 [Bacteroides coprocola DSM 17136]
          Length = 236

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
            V++IG G G +  M+    A  V+  + D +      +  +  P  NR+ I + D +++
Sbjct: 40  RVLDIGTGTGLIALMVAQRSAACVVGTDIDGEAVEQAMENVNASPWKNRICICRKDVMQM 99

Query: 108 DFEKFFNISSPIRIIANLPYNI 129
           + E++    S   I++N PY +
Sbjct: 100 NGEEY---GSFDVIVSNPPYFV 118


>gi|168216130|ref|ZP_02641755.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
 gi|182381858|gb|EDT79337.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
          Length = 255

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 42/123 (34%), Gaps = 5/123 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             I E S        +EIG G G  T   L  G   +I IE  +      K+    + N 
Sbjct: 27  HDIMEYSKLDRNKKALEIGIGTGQATLPFLKTGFD-LIAIELGENLAEFSKNKFKAYKNF 85

Query: 97  --LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
             L I  +D  K D   F  I S       +  NIG    F  +        + +   + 
Sbjct: 86  NILNIPFEDF-KCDENTFDLIYSATAF-HWIDENIGYPKAFKLLKTGGTLALFWNKPFIG 143

Query: 155 QKE 157
           +K+
Sbjct: 144 RKD 146


>gi|157363618|ref|YP_001470385.1| ribosomal L11 methyltransferase [Thermotoga lettingae TMO]
 gi|157314222|gb|ABV33321.1| ribosomal L11 methyltransferase [Thermotoga lettingae TMO]
          Length = 268

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             +  +V+++G G   L+ +   LGARKV  ++ D     + +    ++   +++I  D 
Sbjct: 130 LKNSCSVLDVGCGTAVLSIIAKRLGARKVTALDNDPVAVEVARGFVRENNVEVDVIVSDL 189

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           L     ++            +  NI T ++   ++ 
Sbjct: 190 LNGVNGEY----------DIVVANIVTPVIIELLNQ 215


>gi|308807909|ref|XP_003081265.1| Fmu (ISS) [Ostreococcus tauri]
 gi|116059727|emb|CAL55434.1| Fmu (ISS) [Ostreococcus tauri]
          Length = 276

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 7/154 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNR- 96
           I  +  +  G  V++  AG G  T  +   +   +V V + D++    L+  + +  +R 
Sbjct: 75  IVAALEAKAGERVLDACAGNGGKTLAIAAEMKFGEVCVFDIDRRRLAHLEANAERAGSRD 134

Query: 97  -LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            +  +Q  +L+    + F+        +++     T  L +       P     + L   
Sbjct: 135 MVTTVQGTSLQDLAPQSFDAVLVDAPCSSVGALRRTPSLRHM---HDDPNELAKIQLGIL 191

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           +E    +        Y   SVL+    +    F+
Sbjct: 192 REAA-ALVKPGGRLVYATCSVLSFENHEVVRAFE 224


>gi|1709169|sp|P52284|MTR1_PBCVX RecName: Full=Modification methylase CviRI; Short=M.CviRI; AltName:
           Full=Adenine-specific methyltransferase CviRI
 gi|281234|pir||S26851 site-specific DNA-methyltransferase (adenine-specific) (EC
           2.1.1.72) CviRI - Chlorella virus CV-XZ6E
 gi|323329|gb|AAA42900.1| TGCA adenine methyltransferase [Chlorella virus]
          Length = 379

 Score = 39.0 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 12/94 (12%)

Query: 36  LKKIA-ESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++ I  E  G  +   ++E   G G  ++         ++I +E D +   + +D     
Sbjct: 32  IRDIVFEELGDFEPTNILEPTCGTGEFISDCRKVYKNSRIIGVEIDPRSAELARD----- 86

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            ++ EII  D +  D ++ F++     II N PY
Sbjct: 87  GSKNEIIVHDFMTWDTDEKFDL-----IIGNPPY 115


>gi|330972796|gb|EGH72862.1| group 2 family glycosyl transferase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 1571

 Score = 39.0 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            + G +++EIGAG G +++ L   GA  V+ +E   +   I    +    N + ++ +  
Sbjct: 82  LIKGKSILEIGAGCGAISRYLGEAGA-TVLSLEGSPRRAAIASSRTRDLDN-VTVLAE-- 137

Query: 105 LKVDFEKFFNISSPIRIIANLPY 127
            + D  K       + +I  L Y
Sbjct: 138 -RFDDFKLDQQFDVVTLIGVLEY 159


>gi|326480479|gb|EGE04489.1| equisetin synthetase [Trichophyton equinum CBS 127.97]
          Length = 3478

 Score = 39.0 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 13/149 (8%)

Query: 34   NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEKDQQFFPILKDIS 90
            N+  +I   +     + +IEIGAG G  T+++L    +        +    FF   ++  
Sbjct: 1224 NLAAQI---AYRYPRMNIIEIGAGTGGSTRLILPTLGKAFSTYTFTDISSGFFEAAEERF 1280

Query: 91   SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL------LFNWISADTWP 144
            S++ +R+     D  K   E+ F       ++A+   ++G  +      +   +    W 
Sbjct: 1281 SKYADRMIFKTLDMEKDLSEQGFTEGHYDMVLASNILHVGPDIDLTLSNVRKLVKPGGWL 1340

Query: 145  PFWESLTLLFQKEVGERITAQKNSPHYGR 173
               E  T       G  +        YG 
Sbjct: 1341 IKMEVATHFPSLREGFSMFGFPGW-WYGA 1368


>gi|264677180|ref|YP_003277086.1| methyltransferase small [Comamonas testosteroni CNB-2]
 gi|262207692|gb|ACY31790.1| methyltransferase small [Comamonas testosteroni CNB-2]
          Length = 404

 Score = 39.0 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 36  LKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ----FFPILKDIS 90
           L  +A +S    G     +IG G G L+ +LL  G + V+  +  ++        L+ + 
Sbjct: 212 LDLVARASIPAAGIQQAWDIGVGTGVLSALLLKRGVKSVVATDTSERALACACENLQRL- 270

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             H +R+E+   D         F       I+ N P+
Sbjct: 271 -GHASRVELQHAD--------LFAQGQAGLIVCNPPW 298


>gi|260578588|ref|ZP_05846498.1| tRNA (guanine-N(7)-)-methyltransferase
           (tRNA(m7G46)-methyltransferase) [Corynebacterium
           jeikeium ATCC 43734]
 gi|258603303|gb|EEW16570.1| tRNA (guanine-N(7)-)-methyltransferase
           (tRNA(m7G46)-methyltransferase) [Corynebacterium
           jeikeium ATCC 43734]
          Length = 254

 Score = 39.0 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLEIIQD 102
             D  T++EIG+G G  T  +  L A + ++ +E        +L  +     + + +I+ 
Sbjct: 74  DRDAETIVEIGSGTGTSTAAMAPLEAEKNIVAVELYRPGLAKLLGSVVRGDIHNVRMIRG 133

Query: 103 DALKVDFEKFFNIS 116
           D ++V    F   S
Sbjct: 134 DGVEVLQRMFAPES 147


>gi|167586411|ref|ZP_02378799.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia ubonensis Bu]
          Length = 255

 Score = 39.0 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 46  LDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
            +   ++EIG G G  T  +         + +E  +     +LK I  Q    + IIQ D
Sbjct: 79  RNAPRILEIGFGMGASTAEIAAHRPDDDFLGVEVHEPGVGALLKLIGEQDLTNIRIIQHD 138

Query: 104 ALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           A++V                   P     +    +    L   +++   P  +      +
Sbjct: 139 AVEVLEHMLAPDSLDGVHIFFPDPWHKARHHKRRLIQPPLVKLLASRLKPGAYLHCATDW 198

Query: 155 QKE 157
           Q  
Sbjct: 199 QNY 201


>gi|126734329|ref|ZP_01750076.1| hypothetical protein RCCS2_09219 [Roseobacter sp. CCS2]
 gi|126717195|gb|EBA14059.1| hypothetical protein RCCS2_09219 [Roseobacter sp. CCS2]
          Length = 232

 Score = 39.0 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQ 92
           ++ +   +S     + V+++GAG G  T  LL   +   ++ ++E       + +     
Sbjct: 58  LIARSVSASQYSSLVNVLDVGAGTGTFTTALLQSSVAVGRIDLLEPSPDMLAVAEHRIGP 117

Query: 93  HPNRLEIIQD 102
           + NRL     
Sbjct: 118 NANRLRCFSG 127


>gi|126727187|ref|ZP_01743024.1| Protein-L-isoaspartate O-methyltransferase [Rhodobacterales
           bacterium HTCC2150]
 gi|126703615|gb|EBA02711.1| Protein-L-isoaspartate O-methyltransferase [Rhodobacterales
           bacterium HTCC2150]
          Length = 213

 Score = 39.0 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + ++        ++E+G G G    +L  LG R++  I++ ++     + +  +
Sbjct: 63  PSVVALMTQALQVQPRDKILEVGTGSGYQAAILSQLG-RRIYTIDRHRRLAQTAQKLFER 121

Query: 93  HP-NRLEIIQDD 103
                + +I  D
Sbjct: 122 LDLGNITVISGD 133


>gi|74316034|ref|YP_313774.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055529|gb|AAZ95969.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 418

 Score = 39.0 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 7/142 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A   G+  G  V++  A PG  T  +L L    ++ ++ D      +++   +      +
Sbjct: 230 ARLLGAKPGERVLDACAAPGGKTGHILELADVDLVALDVDAARLARVQENLDRLRLHATL 289

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLFQ 155
           ++ DA +   E +++     RI+A++P +    +       W+        + +   +  
Sbjct: 290 VEGDAAR--PEAWWDGRPFDRILADVPCSASGVVRRNPDIKWLRRPGDIAQFAAQQAVIV 347

Query: 156 KEVGERITAQKNSPHYGRLSVL 177
            E   R+     +  Y   S+ 
Sbjct: 348 -EALWRLLRPGGTLLYATCSIF 368


>gi|327294095|ref|XP_003231743.1| hypothetical protein TERG_07361 [Trichophyton rubrum CBS 118892]
 gi|326465688|gb|EGD91141.1| hypothetical protein TERG_07361 [Trichophyton rubrum CBS 118892]
          Length = 3910

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 12/144 (8%)

Query: 34   NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEKDQQFFPILKDIS 90
            N+  +I   +     + +IEIGAG G  T+M+L    +        +    FF   +   
Sbjct: 1359 NLAAQI---AYRYPRMNIIEIGAGTGGSTRMILPTLGKAFSTYTFTDISSGFFEAAEKRF 1415

Query: 91   SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL------LFNWISADTWP 144
            SQ+ +R+     D  K   E+ F       ++A+   ++G  +      +   +    W 
Sbjct: 1416 SQYADRMIFKTLDMEKDLSEQGFTEGHYDMVLASNVLHVGPDIDLTLSNVRKLVKPGGWL 1475

Query: 145  PFWESLTLLFQKEVGERITAQKNS 168
               E  T       G  ++     
Sbjct: 1476 INMEVATYFPSLREGFSMSGFPGW 1499


>gi|318060225|ref|ZP_07978948.1| O-methyltransferase [Streptomyces sp. SA3_actG]
 gi|318080221|ref|ZP_07987553.1| O-methyltransferase [Streptomyces sp. SA3_actF]
          Length = 336

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++        G  V+E+GAG G    +L    G   V  ++ D +     +   +
Sbjct: 113 PSLMARMLTGLDVRPGDRVLEVGAGTGWNAGLLCHRLGEDLVTTVDLDTEITESARAHLA 172

Query: 92  QHPNRLEIIQDDALKVDFEK 111
           +   R E+   D ++    +
Sbjct: 173 RAGFRPEVGTGDGMRGWPAR 192


>gi|307209229|gb|EFN86336.1| Methyltransferase-like protein 5 [Harpegnathos saltator]
          Length = 211

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 13/170 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             ++   + ++G+G G L      LGA  V+  E D     I           +EI+Q D
Sbjct: 48  NDIEDRNIADLGSGCGVLALGAKMLGAGYVVGFEIDSDATGIHNGNCKDIELFVEIVQCD 107

Query: 104 ALKVDFEKFFNISSPIRIIANLPY----NIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
            L+    KF        +I N P+    N G  + F  ++         SL     ++  
Sbjct: 108 ILQYLPGKFEKYFDT--VIMNPPFGTKKNAGIDMKFLEMAIRLSTNVVYSLHKSSTRDYV 165

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFI 209
               AQ  +      +V+   R      +            +    I F 
Sbjct: 166 LSKAAQLGAKG----TVVAELRYDLPRAYKFHKRTSV---DIEVDFIRFE 208


>gi|291238931|ref|XP_002739381.1| PREDICTED: protein arginine methyltransferase 7-like [Saccoglossus
           kowalevskii]
          Length = 858

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 3/116 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           I ++       TV++IGAG G L+ + +  GA+ V   E  +  + + KD   +++  ++
Sbjct: 160 IRKAIQDGH-DTVLDIGAGTGILSMLAIQSGAKHVYACEMSKTTYEMAKDVLTTNRMSDK 218

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
           + ++   +  +   K       + +   +   +    +   +S        E  T 
Sbjct: 219 VTLLHTSSKDIVIPKDIPQRVSLVVTETVDSGLLGENIIQTLSHAWKRLLIEDNTG 274


>gi|206561442|ref|YP_002232207.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           cenocepacia J2315]
 gi|198037484|emb|CAR53420.1| probable protein-L-isoaspartate O-methyltransferase [Burkholderia
           cenocepacia J2315]
          Length = 218

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISS 91
             +  ++ +  G      V+ IGAG G L   L    A+ V  +E D       +D + +
Sbjct: 64  PRVEARVLQELGVKKHENVLVIGAGSGYL-AALFAHRAQHVTAVEIDPAIAKFAEDNLRN 122

Query: 92  QHPNRLEIIQDD 103
                 E++  D
Sbjct: 123 DGVTNAEVVLGD 134


>gi|192289262|ref|YP_001989867.1| methyltransferase type 12 [Rhodopseudomonas palustris TIE-1]
 gi|192283011|gb|ACE99391.1| Methyltransferase type 12 [Rhodopseudomonas palustris TIE-1]
          Length = 205

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 40  AESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           A+++G       V+EIG G G  T + L  G  +    +   +   I    +   P  L 
Sbjct: 31  ADAAGRLSPSDRVLEIGCGTGG-TAIRLAPGVAQWTATDLSPEMVRIAS--AKPAPPNLS 87

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANL 125
            +  DA             P   +   
Sbjct: 88  FVVADA------DLSTGEPPYDAVCAF 108


>gi|146308558|ref|YP_001189023.1| ribosomal protein L11 methylase-like protein [Pseudomonas mendocina
           ymp]
 gi|145576759|gb|ABP86291.1| Ribosomal protein L11 methylase-like protein [Pseudomonas mendocina
           ymp]
          Length = 265

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++  + E +       VI++G+G G +    +   GAR    I+ D +     ++ + + 
Sbjct: 45  VVAHMLELAEIGPDDYVIDLGSGDGRIAISAVQDHGARAAYGIDLDPERVSEARENAERE 104

Query: 94  --PNRLEIIQDDALKVDFEK 111
              +R+   Q D  + D  +
Sbjct: 105 GVADRVTFEQGDLFEKDISQ 124


>gi|121609307|ref|YP_997114.1| type 11 methyltransferase [Verminephrobacter eiseniae EF01-2]
 gi|121553947|gb|ABM58096.1| Methyltransferase type 11 [Verminephrobacter eiseniae EF01-2]
          Length = 237

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ +         V+EIGAG G +   LL   A  V+ +E      P L D++  
Sbjct: 84  PRVEARMLQDLQIAPTDRVLEIGAGSGYM-AALLARRAAHVLALEI----VPALADMART 138

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           +  +  I   D  + D         P  +I
Sbjct: 139 NLRQAGIGNADVRQADGASDALAEGPFDVI 168


>gi|87198361|ref|YP_495618.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134042|gb|ABD24784.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 399

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 32  DLNILKKIAESS-----GSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPI 85
           D  + K+   +          G  + +IGAG G++  + LL   A +   IE D      
Sbjct: 229 DGQLTKRPVRALTLSALAPCAGELLWDIGAGSGSIGIEWLLAHLANRACAIEADPVRADR 288

Query: 86  LKDISSQHP-NRLEIIQD---DAL 105
           ++  ++    +RL+++     DAL
Sbjct: 289 VRANAAALGVDRLKVVVGIAPDAL 312


>gi|92113291|ref|YP_573219.1| methyltransferase type 11 [Chromohalobacter salexigens DSM 3043]
 gi|91796381|gb|ABE58520.1| pimeloyl-CoA biosynthesis protein BioC [Chromohalobacter salexigens
           DSM 3043]
          Length = 267

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           ++   +          ++   Q+ +    +L+++ + +G      V+++G GPG+LT  L
Sbjct: 21  RARVARAFSRAAPHYARRATAQHAMG-KRLLERLPDHAGD-----VLDLGCGPGDLTAAL 74

Query: 66  LTLGARKVIVIEKDQQFFP-ILKDISSQHPNRLEIIQDDA 104
            T       V   D    P +L +   +HP  +  I  DA
Sbjct: 75  ATHYGAACTVSGLD--LAPGMLAEAHRRHPGAIRWICGDA 112


>gi|258509104|ref|YP_003171855.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           rhamnosus GG]
 gi|257149031|emb|CAR88004.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           rhamnosus GG]
 gi|259650393|dbj|BAI42555.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           rhamnosus GG]
          Length = 393

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SS 91
           LN +  I        G T+++IG G G L           V+ I   ++ F ++ D   +
Sbjct: 153 LNKIDHILRKLNPQPGRTLLDIGCGWGTLMLRAAKTYHLHVVGITLSKEQFKLVSDRIEA 212

Query: 92  QHPNRL-EIIQDDALKVDFEKF 112
           +H N + EI+  D  ++D E F
Sbjct: 213 EHLNDVAEILYMDYRELDREPF 234


>gi|229820730|ref|YP_002882256.1| tRNA methyltransferase complex GCD14 subunit [Beutenbergia cavernae
           DSM 12333]
 gi|229566643|gb|ACQ80494.1| tRNA methyltransferase complex GCD14 subunit [Beutenbergia cavernae
           DSM 12333]
          Length = 342

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPN 95
           +I   +    G  V+E GAG G L+  LL        ++ +E+   F  I +        
Sbjct: 114 QIVAMADIYPGARVVEAGAGSGALSMSLLRAVGDHGSLLSVERRADFADIARGNVESFFG 173

Query: 96  R 96
           R
Sbjct: 174 R 174


>gi|260798178|ref|XP_002594077.1| hypothetical protein BRAFLDRAFT_68483 [Branchiostoma floridae]
 gi|229279310|gb|EEN50088.1| hypothetical protein BRAFLDRAFT_68483 [Branchiostoma floridae]
          Length = 274

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I      L G  V+E+GAG G  T   L   A  V  ++  + F     + +++H   + 
Sbjct: 86  ILAMLPDLKGKRVLELGAGIGRFT-PSLARQADHVTAVDFMESFIKK-NEEANRHLGNIN 143

Query: 99  IIQDDALKVDFEK 111
            +Q D  ++D  +
Sbjct: 144 FLQADVTRLDLPQ 156


>gi|193782575|ref|YP_002000341.1| hypothetical protein SMa5025 [Sinorhizobium meliloti 1021]
 gi|307312895|ref|ZP_07592524.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
 gi|193073031|gb|ACF07971.1| hypothetical protein SMa5025 [Sinorhizobium meliloti 1021]
 gi|306899409|gb|EFN30042.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
          Length = 143

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEK 78
          I ++     G+ V+EIG GPG + + +   +G   V+ I++
Sbjct: 12 IVDALPLRRGMRVLEIGCGPGAMAREIAGRIGDGHVLAIDR 52


>gi|254372579|ref|ZP_04988068.1| RNA methyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570306|gb|EDN35960.1| RNA methyltransferase [Francisella novicida GA99-3549]
          Length = 449

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++K+  E     +  ++I++  G GN T  + +  A+ VI +E +       K+ +
Sbjct: 285 INKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI-SQHAKTVIGVEGEPTMVKRAKETA 343

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISS 117
           + +     I+  +    +  + F    
Sbjct: 344 ADN----NIVNVNFYAANLFESFEDKE 366


>gi|116754810|ref|YP_843928.1| methyltransferase type 11 [Methanosaeta thermophila PT]
 gi|116754817|ref|YP_843935.1| methyltransferase type 11 [Methanosaeta thermophila PT]
 gi|116754824|ref|YP_843942.1| methyltransferase type 11 [Methanosaeta thermophila PT]
 gi|116666261|gb|ABK15288.1| Methyltransferase type 11 [Methanosaeta thermophila PT]
 gi|116666268|gb|ABK15295.1| Methyltransferase type 11 [Methanosaeta thermophila PT]
 gi|116666275|gb|ABK15302.1| Methyltransferase type 11 [Methanosaeta thermophila PT]
          Length = 263

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNR-LEIIQD 102
                 +++IG G G +T  +  L     V+ I+         +   S    R L   Q 
Sbjct: 29  IRGDERILDIGCGDGKITARISQLVPDGSVLGIDISPDMISFARRRYSPVIFRNLRFEQG 88

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIG 130
           DAL + F++ F+I      +  +  ++ 
Sbjct: 89  DALDLRFDEEFDIVVSFACLHWIRDHLS 116


>gi|84517101|ref|ZP_01004457.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Loktanella
           vestfoldensis SKA53]
 gi|84508996|gb|EAQ05457.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Loktanella
           vestfoldensis SKA53]
          Length = 402

 Score = 39.0 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 23/120 (19%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-----DQQFFPILKDISS 91
           K + +  G   G  V+EIG G G   +        +V  +       D   + + +   +
Sbjct: 175 KSMVDQMGVQPGDHVLEIGCGWGGFAEYAAKERGLRVTGLTISQAQHD---YAVERMQKA 231

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
              +++ I   D                R    +   I +  +F  +    WP ++E+L 
Sbjct: 232 GLSDKVTIKMQD---------------YRDEKGIYDGIASIEMFEAVGEKYWPVYFETLH 276


>gi|325694368|gb|EGD36280.1| methyltransferase domain protein [Streptococcus sanguinis SK150]
          Length = 195

 Score = 39.0 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAES--------SGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+ +              G  V+++G G G L   L        
Sbjct: 24  LGQRLTFLTDAGVFSKKMIDYGSRVLLSVLDFKAGERVLDVGCGYGPLGLTLAKAQGVTA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +Q+   + +  + ++     I Q +  +      F+      II+N P   G ++
Sbjct: 84  TMVDINQRALDLAQKNAERNQVSAHIFQSNVYE-KVSGIFD-----HIISNPPIRAGKQV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK 156
           +   IS           LTL+ QK
Sbjct: 138 VHEVISGSYEHLTEGGDLTLVIQK 161


>gi|300869070|ref|ZP_07113671.1| putative Methyltransferase type 11 [Oscillatoria sp. PCC 6506]
 gi|300332927|emb|CBN58867.1| putative Methyltransferase type 11 [Oscillatoria sp. PCC 6506]
          Length = 262

 Score = 39.0 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQ- 92
           +K +           ++++G G G LT  +      +  VI  D   +     K   ++ 
Sbjct: 20  IKDLISQLQLRGDEKILDVGCGDGRLTVEISKYLP-QGYVIGLDCFPEIIEFAKSKFNRE 78

Query: 93  -HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            HPN +E    DA  ++FEK F++      +  +P +I 
Sbjct: 79  NHPN-VEFQLGDARSLEFEKSFDVIVSFEALHYIPEHIS 116


>gi|251788476|ref|YP_003003197.1| protein-L-isoaspartate O-methyltransferase [Dickeya zeae Ech1591]
 gi|247537097|gb|ACT05718.1| protein-L-isoaspartate O-methyltransferase [Dickeya zeae Ech1591]
          Length = 208

 Score = 39.0 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
              + ++ E         V+EIG G G  T +L  L  R V  +E+       L+  + +
Sbjct: 61  PYTVARMTELLRLTTESRVLEIGTGSGYQTAILAHL-VRHVFSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + ++   P    I+   P  I + L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWSSKGPFDAIIVTAAPPEIPSALMAQL 162


>gi|20091239|ref|NP_617314.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Methanosarcina
           acetivorans C2A]
 gi|19916357|gb|AAM05794.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Methanosarcina
           acetivorans C2A]
          Length = 222

 Score = 39.0 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 47  DGITVIEIGAGPG-NLTQMLLTLG-ARKVIVIEKDQQFFPI--LKDISSQHPNRLEIIQD 102
            G  ++EIG G G  + ++   +G + KV  I+  ++   I  LK   +     ++++  
Sbjct: 47  PGEIILEIGFGTGQGILKLAQAVGNSGKVYGIDISEKMCEITRLKVEKAGFSKWVQLVNG 106

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           DA  + F      +  +     L       L+               +  + QK
Sbjct: 107 DAFNLPFPDSSFNAIFMIFTLELFDTPEIPLVLKECQRVLKKDGRLCVVAMKQK 160


>gi|18313149|ref|NP_559816.1| beta-aspartate methyltransferase (pimT), conjectural [Pyrobaculum
           aerophilum str. IM2]
 gi|18160661|gb|AAL63998.1| beta-aspartate methyltransferase (pimT), conjectural [Pyrobaculum
           aerophilum str. IM2]
          Length = 254

 Score = 39.0 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ---FFPILKDISS-QHP 94
           I +++G   G  V E G G G LT +L        +V   D +       ++++ +    
Sbjct: 87  IVKAAGIGPGSVVAEAGTGSGFLTAVLAWYVKPWGVVYSFDNRTEHMKTAVRNLEAVGLL 146

Query: 95  NRLEIIQDDALK 106
           N +E+   D +K
Sbjct: 147 NYVELQIRDVVK 158


>gi|254495215|ref|ZP_05108139.1| methyltransferase [Polaribacter sp. MED152]
 gi|85819567|gb|EAQ40724.1| methyltransferase [Polaribacter sp. MED152]
          Length = 222

 Score = 39.0 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 47  DGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           +  ++++IG+G G L  M+     A  +  +E D+  +    +        +RL     +
Sbjct: 19  EVDSILDIGSGTGILGLMMAQRSEAFTIDAVEIDEAAYEQTVENFEGSDWGDRLFCYHSN 78

Query: 104 ALKVDFEKFFNISSPIRIIANLPYN 128
            +    E      S   +I+N P+ 
Sbjct: 79  FIDFADEIVEEEESYDLVISNPPFY 103


>gi|312878905|ref|ZP_07738705.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Aminomonas paucivorans DSM 12260]
 gi|310782196|gb|EFQ22594.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Aminomonas paucivorans DSM 12260]
          Length = 429

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 12/78 (15%)

Query: 29  FLLDLNI------LKKIA-ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           FL    +      L+ +       L+G  ++EIG G G +T  L   G+R V+ +E++  
Sbjct: 248 FLRHPGVPLTKAPLRGLVLALLAPLEGSRILEIGTGTGGVTAELARAGSR-VVSLERN-- 304

Query: 82  FFPILKDISSQHPNRLEI 99
             P  +D++++H  RL +
Sbjct: 305 --PEARDLAARHLERLGL 320


>gi|302385306|ref|YP_003821128.1| ribosomal protein L11 methyltransferase [Clostridium
           saccharolyticum WM1]
 gi|302195934|gb|ADL03505.1| ribosomal protein L11 methyltransferase [Clostridium
           saccharolyticum WM1]
          Length = 318

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQ 101
                T++++G G G L    L LGA++V   + D+     +++    +    ++ +++Q
Sbjct: 170 VTPETTLLDVGTGSGILGITALKLGAKEVFGTDLDENAIAAVRENMKANHISGDKFQVLQ 229

Query: 102 DDA 104
            + 
Sbjct: 230 GNI 232


>gi|289705486|ref|ZP_06501878.1| methyltransferase domain protein [Micrococcus luteus SK58]
 gi|289557715|gb|EFD51014.1| methyltransferase domain protein [Micrococcus luteus SK58]
          Length = 307

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH--PNR 96
             +        V+++G GPG LT+ L       +VI ++         ++ +++   P  
Sbjct: 53  VRAEAPR---VVVDLGCGPGTLTRTLAERWPDAEVIGLDDSPAMLERAREQAARTGAPAN 109

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           L     DA +    +  ++     ++  +P +   RL+  W+   T   ++
Sbjct: 110 LRFEAVDASQWRPSRATDVVVSNAMLQWIPTHR--RLIRRWLGDLTPGAWF 158


>gi|300771963|ref|ZP_07081834.1| probable O-methyltransferase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761349|gb|EFK58174.1| probable O-methyltransferase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 192

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 15/113 (13%)

Query: 46  LDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                 +E+G G G  T  LL     +  ++ ++ D  F  I ++  S  P RL ++Q D
Sbjct: 44  KPNARFLELGTGTGLSTSWLLSGMDESSTLLSVDHDPAFLTIAQEYLSSDP-RLTLVQQD 102

Query: 104 A---------LKVDFEKFFNISSPIRIIANLPYNI---GTRLLFNWISADTWP 144
           A         LK DF            ++     +   G   + + +    WP
Sbjct: 103 AGEWLLENKELKFDFIFADTWHGKFLELSTCLDMLDRGGIYFIDDLLPQPNWP 155


>gi|256420716|ref|YP_003121369.1| methyltransferase type 12 [Chitinophaga pinensis DSM 2588]
 gi|256035624|gb|ACU59168.1| Methyltransferase type 12 [Chitinophaga pinensis DSM 2588]
          Length = 265

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQH--PN 95
           I  +      + ++EIG G G +    L  G   V + +  D+    +  D   ++    
Sbjct: 28  IDAAMPVTPDLRIMEIGCGEGGVLIPFLEKGCHCVGVDLSDDK--IALAHDYLKEYVDAG 85

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            +++I  +   VDF   F  S  + I+ +   +I
Sbjct: 86  NMQLINKNIYDVDFLGEFKHSFDLIILKDAIEHI 119


>gi|226493374|ref|NP_001149819.1| LOC100283446 [Zea mays]
 gi|195634865|gb|ACG36901.1| protein arginine N-methyltransferase 1 [Zea mays]
 gi|219886547|gb|ACL53648.1| unknown [Zea mays]
          Length = 384

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNR 96
           I +SS  +    V+++GAG G L+      GA+ V  IE   Q   + ++I     + + 
Sbjct: 93  ITQSSFLIKNKVVLDVGAGTGILSLFCAKAGAKHVYAIEC-SQMADMAQEIVKSNGYSDV 151

Query: 97  LEIIQD 102
           + +I+ 
Sbjct: 152 ITVIKG 157


>gi|220922913|ref|YP_002498215.1| type 11 methyltransferase [Methylobacterium nodulans ORS 2060]
 gi|219947520|gb|ACL57912.1| Methyltransferase type 11 [Methylobacterium nodulans ORS 2060]
          Length = 269

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
             S       V+EI AG G LT+   L    +  V+  + +Q              +R+ 
Sbjct: 35  RLSKLDPQD-VLEIAAGTGALTRAMALQLSASAHVVATDLNQPMIDYAAQRLR--DDRVT 91

Query: 99  IIQDDALKVDFEK 111
             Q DAL + FE+
Sbjct: 92  WGQADALALPFEE 104


>gi|329848601|ref|ZP_08263629.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Asticcacaulis biprosthecum C19]
 gi|328843664|gb|EGF93233.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Asticcacaulis biprosthecum C19]
          Length = 336

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP--ILKDISS 91
           + L++  E +   DG TV+E+G G G+L+  +       +I    +       I  +   
Sbjct: 99  HALERTCEHADLRDGQTVLELGCGWGSLSLFMAERYPGSLITAVSNSHSQRQYITGEAKR 158

Query: 92  QHPNRLEIIQDDALKVDFEKFFN 114
           +  N L +I  D       + F+
Sbjct: 159 RGLNNLTVITADMNDFSTHEHFD 181


>gi|325282111|ref|YP_004254653.1| Ribosomal protein L11 methyltransferase [Odoribacter splanchnicus
           DSM 20712]
 gi|324313920|gb|ADY34473.1| Ribosomal protein L11 methyltransferase [Odoribacter splanchnicus
           DSM 20712]
          Length = 283

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 6/121 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDISSQHP 94
           L+ I ++   + G  V+++G G G L+ +    GAR++  I+ D+  +   +++I +   
Sbjct: 135 LRTILDNKERITGKRVLDMGCGTGILSILAAKTGAREITGIDIDEWAYNNAMENIRANGL 194

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           N + I   DA  ++ E  F++     I+AN+  NI    + ++++               
Sbjct: 195 NNITIKIGDARLLEAEAPFDV-----ILANINRNILLEDMPHYVARLLPQGLLIMSGFYL 249

Query: 155 Q 155
           Q
Sbjct: 250 Q 250


>gi|300717996|ref|YP_003742799.1| S-adenosyl-L-methionine-dependent methyltransferase [Erwinia
           billingiae Eb661]
 gi|299063832|emb|CAX60952.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Erwinia billingiae Eb661]
          Length = 277

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           +       V++IG G G +  ML        +V  +E D+Q     ++ +++ P  +R+ 
Sbjct: 72  APVAGAQRVLDIGTGSGLIALMLAQRTGQDVEVDAVELDEQAVGQARENAAESPWADRIH 131

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           + QDD +               I++N PY +
Sbjct: 132 VWQDDIVHWSKNA---EQRYSLIVSNPPYFV 159


>gi|288920183|ref|ZP_06414499.1| Methyltransferase type 11 [Frankia sp. EUN1f]
 gi|288348433|gb|EFC82694.1| Methyltransferase type 11 [Frankia sp. EUN1f]
          Length = 249

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +   + G  V+++GAG G  T+ LL  GAR V+ +E        L+  +   P    +++
Sbjct: 33  AGRPVAGARVVDVGAGTGIATRALLARGAR-VLPVEPGPVMLDRLRRHNPGLP----VVR 87

Query: 102 DD 103
            D
Sbjct: 88  GD 89


>gi|254293692|ref|YP_003059715.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Hirschia
           baltica ATCC 49814]
 gi|254042223|gb|ACT59018.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Hirschia
           baltica ATCC 49814]
          Length = 216

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            K+ E++       V+++ +G G  +  +L   A  V+ +E D      L + +S   + 
Sbjct: 67  AKLVEAAKIQADDEVLDVASGSGY-SAAILAKLAAAVVGVETD----EALAEAASARLDS 121

Query: 97  LEIIQDDALKVDFEKFFNISSPIRII 122
           L+I   D +  D  K      P  +I
Sbjct: 122 LDIDNADVVAGDISKGLASQGPFDVI 147


>gi|242237730|ref|YP_002985911.1| methyltransferase type 11 [Dickeya dadantii Ech703]
 gi|242129787|gb|ACS84089.1| Methyltransferase type 11 [Dickeya dadantii Ech703]
          Length = 258

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           L KI E +     + V++IG GPG   +T   L L   +V  ++  Q      +  ++ +
Sbjct: 44  LAKILEQAPQKPVLRVLDIGTGPGFFAVT---LALAGHRVTAVDVTQAMLDQARANAAHY 100

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
              ++ +  D   V    F +    + +  N+ +N+   
Sbjct: 101 RTTIDFVHSD---VHALPFADNGFDLVVSRNVTWNLTDP 136


>gi|257064807|ref|YP_003144479.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit,precorrin-6Y C5,15-methyltransferase
           (decarboxylating), CbiT subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792460|gb|ACV23130.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit,precorrin-6Y C5,15-methyltransferase
           (decarboxylating), CbiT subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 451

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
               G      V ++G+G G++T        A +V  +E   +   + +   S+     +
Sbjct: 286 VSKLGIAPDSVVWDVGSGTGSITVACARAACAGQVHAVEMRPEAVELTRRNVSKFGLGNV 345

Query: 98  EIIQDDALKVDFEKFFNISSPIRII 122
            + Q  A     E    + +P  + 
Sbjct: 346 TVTQGRA----PEALAGLPAPDCVF 366


>gi|209364159|ref|YP_001425062.2| 3-demethylubiquinone-9 3-methyltransferase [Coxiella burnetii
           Dugway 5J108-111]
 gi|207082092|gb|ABS77540.2| 3-demethylubiquinone 3-methyltransferase [Coxiella burnetii Dugway
           5J108-111]
          Length = 243

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L++   LK I +      G  V+++G G G L++ L   GA  V  ++  +    + K+ 
Sbjct: 44  LINPVRLKYIEQQITL-KGKHVLDVGCGGGLLSEALAKHGA-IVTGVDMSESLIDVAKNH 101

Query: 90  SSQHPNR-------LEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           + Q           +EI+  DA + D     E   ++  P R+I N    I         
Sbjct: 102 AEQQQLNINYQCQDIEILTKDAQRFDIITCMELLEHVPDPQRMIKNCAALIKPG--GKLF 159

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYG---RLSVLTGW 180
            +     F   L  +   E    +   K +  Y      S LT W
Sbjct: 160 FSTINRNFKAYLYTIVGAEYVFNLL-PKGTHDYAQFIHPSELTQW 203


>gi|254462690|ref|ZP_05076106.1| methyltransferase small [Rhodobacterales bacterium HTCC2083]
 gi|206679279|gb|EDZ43766.1| methyltransferase small [Rhodobacteraceae bacterium HTCC2083]
          Length = 264

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDI 89
           +D  +L   A S  +  G TV+E+G G G  +  L        +  +E  + +  + +  
Sbjct: 39  VDPVLL---AASIPAKAGETVLELGCGGGVASLCLARRLVGLTLTGVELQENYADLARRN 95

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           + ++   L ++  D   + FE          + AN PY 
Sbjct: 96  AERNALDLNVVHADINALPFEVLDQRFD--HVFANPPYY 132


>gi|157377187|ref|YP_001475787.1| putative methyltransferase [Shewanella sediminis HAW-EB3]
 gi|157319561|gb|ABV38659.1| putative methyltransferase [Shewanella sediminis HAW-EB3]
          Length = 194

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            L+ +T+++ G G GNLTQ LL+  A+ ++ ++  ++   +L++    + + +     D 
Sbjct: 34  LLEELTILDFGCGTGNLTQ-LLSPNAKHIVALDGSREMIKLLEEKELDNVSTISDFLCDE 92

Query: 105 LKVDFEKFFNISSPIRIIANLPY 127
           L  D          I   +   +
Sbjct: 93  LINDHPYLNQKFDLIIASSVCSF 115


>gi|189037618|sp|A9KGL7|UBIG_COXBN RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
          Length = 234

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L++   LK I +      G  V+++G G G L++ L   GA  V  ++  +    + K+ 
Sbjct: 35  LINPVRLKYIEQQITL-KGKHVLDVGCGGGLLSEALAKHGA-IVTGVDMSESLIDVAKNH 92

Query: 90  SSQHPNR-------LEIIQDDALKVD----FEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           + Q           +EI+  DA + D     E   ++  P R+I N    I         
Sbjct: 93  AEQQQLNINYQCQDIEILTKDAQRFDIITCMELLEHVPDPQRMIKNCAALIKPG--GKLF 150

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYG---RLSVLTGW 180
            +     F   L  +   E    +   K +  Y      S LT W
Sbjct: 151 FSTINRNFKAYLYTIVGAEYVFNLL-PKGTHDYAQFIHPSELTQW 194


>gi|330468530|ref|YP_004406273.1| tRNA (adenine-n(1)-)-methyltransferase [Verrucosispora maris
           AB-18-032]
 gi|328811501|gb|AEB45673.1| tRNA (adenine-n(1)-)-methyltransferase [Verrucosispora maris
           AB-18-032]
          Length = 336

 Score = 39.0 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 65/218 (29%), Gaps = 31/218 (14%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP 94
            +I        G  V+E GAG G L+  LL     + ++   E    F  I +       
Sbjct: 113 AQIVAMGDIFPGAKVLEAGAGSGALSCSLLRAVGTSGELHSYELRDDFAQIARRNVEAFF 172

Query: 95  N----RLEIIQDDALKVDFEKF----FNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
           N       +   D  +     F     ++ +P   +  +   +    +F  I      P 
Sbjct: 173 NGPHPAWHLHVGDVGECTETGFDRIILDMLAPWENLDMVERALLPGGVF--IGYVATTPQ 230

Query: 147 WESLTLLFQKEVGER----ITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202
              L    ++  G        +     H   L+V    R  A   F +S     P     
Sbjct: 231 LSELVEALRERGGWTEPRAWESLVRDWHAEGLAVRPDHRMIAHTAFLVSARKLAPG---- 286

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
              +   P         E        A+ +RR+ LR++
Sbjct: 287 ---VTAPPRRRKPSKGTE--------AYVQRRQALREA 313


>gi|326472814|gb|EGD96823.1| polyketide synthase [Trichophyton tonsurans CBS 112818]
          Length = 3626

 Score = 39.0 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 34   NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEKDQQFFPILKDIS 90
            N+  +I   +     + +IEIGAG G  T+++L    +        +    FF   ++  
Sbjct: 1290 NLAAQI---AYRYPRMNIIEIGAGTGGSTRLILPTLGKAFSTYTFTDISSGFFEAAEERF 1346

Query: 91   SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL------LFNWISADTWP 144
            S++ +R+     D  K   E+ F       ++A+   ++G  +      +   +    W 
Sbjct: 1347 SKYADRMIFKTLDMEKDLSEQGFTEGHYDMVLASNILHVGPDIDLTLSNVRKLVKPGGWL 1406

Query: 145  PFWESLTLLFQKEVGERITAQKNSPHYGR 173
               E  T       G  ++       YG 
Sbjct: 1407 IKMEVATHFPSLREGFSMSGFPGW-WYGA 1434


>gi|311896786|dbj|BAJ29194.1| hypothetical protein KSE_33860 [Kitasatospora setae KM-6054]
          Length = 251

 Score = 39.0 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP------NRL 97
             L G   +++GAG G  T++L   GAR V+ +E  +    +L+++S   P      + L
Sbjct: 39  RPLAGADALDVGAGTGIATRLLAGRGAR-VVAVEPSEGMAAVLREVSPGIPVVKATGDEL 97

Query: 98  EIIQDDALKVDFEKFFNISSPIRII 122
                    V + + F+ + P R I
Sbjct: 98  PFHDASVDLVTYAQAFHWTDPERSI 122


>gi|302380719|ref|ZP_07269184.1| ribosomal protein L11 methyltransferase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311662|gb|EFK93678.1| ribosomal protein L11 methyltransferase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 307

 Score = 39.0 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L +LN++ KI            ++IG G G L+ +   LGA++V   + D     I   +
Sbjct: 163 LQELNLIDKIV-----------LDIGCGSGILSVVSSKLGAKEVFATDIDP--LAIEATL 209

Query: 90  SSQHPNRLEIIQD 102
            + + N++  I  
Sbjct: 210 ENANLNKISNINA 222


>gi|302541392|ref|ZP_07293734.1| LigA protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302459010|gb|EFL22103.1| LigA protein [Streptomyces himastatinicus ATCC 53653]
          Length = 278

 Score = 39.0 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
          A  +G  +G +V+E+G G G  T+ L  LG   V  IE       + +   +  
Sbjct: 36 AAVTGMDEGSSVLEVGCGTGQATRSLAALGC-PVTAIEPGADMAALARRRLADF 88


>gi|253988171|ref|YP_003039527.1| protein-L-isoaspartate O-methyltransferase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779621|emb|CAQ82782.1| protein-l-isoaspartate o-methyltransferase [Photorhabdus
           asymbiotica]
          Length = 209

 Score = 39.0 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E         V+EIG G G  T +L  L  + V  +E+ +      K    Q
Sbjct: 62  PYIVARMTELLQLTPDAKVLEIGTGSGYQTAILAHL-VKHVFSVERIKGLQWQAKRRLKQ 120

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              + +     D           +   I + A  PY
Sbjct: 121 LDLHNVSTRHGDG--WQGWPSRGLFDAIIVTAAPPY 154


>gi|159036271|ref|YP_001535524.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Salinispora arenicola CNS-205]
 gi|157915106|gb|ABV96533.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Salinispora arenicola CNS-205]
          Length = 405

 Score = 39.0 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQ 92
           +  + E      G  V+EIGA  G        LT     V+ IE DQ      +  +   
Sbjct: 82  VADMLEQLAPQPGHRVLEIGAATGINAALLAELTSPDGTVVTIELDQDLADGARVSLDRA 141

Query: 93  HPNRLEIIQDD 103
             + +++I  D
Sbjct: 142 GYDTVKVICGD 152


>gi|89900682|ref|YP_523153.1| hypothetical protein Rfer_1896 [Rhodoferax ferrireducens T118]
 gi|122479315|sp|Q21X81|TRMB_RHOFD RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|89345419|gb|ABD69622.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 245

 Score = 39.0 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 22/149 (14%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
               G  ++EIG G G  T  +  L   K  +     +     +LK I  Q    + I+ 
Sbjct: 62  DINPGPVILEIGFGMGEATAHIAALMPEKNFLCCEVHEPGVGALLKRIGEQGLRNIRIVA 121

Query: 102 DDALKV----------DFEKFFNISSPIRIIANLPYNIGTRLLFNWIS----------AD 141
            DA++V          D    F      +   N    I + L+    +          A 
Sbjct: 122 HDAVEVIDHMLPLQSLDGVHIFFPDPWHKKKHNKRRLIQSALIAKLAARLKVGGYIHCAT 181

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPH 170
            W P+ E +  +  KE   + TA +  P 
Sbjct: 182 DWQPYAEQILEVLSKEPLLKNTATQTHPE 210


>gi|85374396|ref|YP_458458.1| cyclopropane fatty acid synthase [Erythrobacter litoralis HTCC2594]
 gi|84787479|gb|ABC63661.1| cyclopropane fatty acid synthase [Erythrobacter litoralis HTCC2594]
          Length = 419

 Score = 39.0 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           IA       G+ V+EIG G G L   L       V  I   ++   +  + +       +
Sbjct: 177 IAAKLDLKPGMRVVEIGCGWGGLAIYLARKFDVHVTGITLSEEQAKLAVERAEAAGVADK 236

Query: 99  IIQDDALKVDFEKFFNISSPIRII 122
           +   D   +D+  F         +
Sbjct: 237 V---DIKLIDYRAFAESGGKFDRV 257


>gi|313651444|gb|EFS15840.1| hypothetical protein SF2457T_0099 [Shigella flexneri 2a str. 2457T]
          Length = 211

 Score = 39.0 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 55  GAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           G G G +   +L       V VIEK Q    ++ +  + H  R+EII  DALK     
Sbjct: 88  GLGLGMVLHAILQKPDVTHVTVIEKSQDVINLVAESFA-HDPRVEIIHADALKYCPPA 144


>gi|307944902|ref|ZP_07660239.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4]
 gi|307771826|gb|EFO31050.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4]
          Length = 346

 Score = 39.0 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L  + E      G  +I+   G G  ++ LL  GA  VI +++D       + +   
Sbjct: 21  PVLLDLVLEYLAPNPGEVIIDGTFGAGGYSRALLERGA-SVIGVDRDPDAIAGGQPLVEA 79

Query: 93  HPNRLEIIQDDA 104
              RL ++    
Sbjct: 80  SDGRLTLVPGCF 91


>gi|294010110|ref|YP_003543570.1| SAM-dependent methyltransferase [Sphingobium japonicum UT26S]
 gi|292673440|dbj|BAI94958.1| SAM-dependent methyltransferase [Sphingobium japonicum UT26S]
          Length = 195

 Score = 39.0 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 25/154 (16%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  IA +     G  V+++G G G L   L          +E D +      ++++    
Sbjct: 7   LALIART--VTPGARVLDVGCGDGALMAALRDAKQVDARGLEIDPR------NVAAAVGR 58

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            L ++Q DA   D   +   S    I++                        + +     
Sbjct: 59  GLSVVQGDA-DTDLATYPEASFDYAILSQTLQTTRRP---------------DRVVEELL 102

Query: 156 KEVGERITAQKNSPHY-GRLSVLTGWRTKATMMF 188
           +   +   +  N  H+ GRLS+  G R   T + 
Sbjct: 103 RIGRQAFVSFPNFAHWRGRLSLFWGGRMPVTRLL 136


>gi|302519123|ref|ZP_07271465.1| protein-L-isoaspartate O-methyltransferase [Streptomyces sp. SPB78]
 gi|302428018|gb|EFK99833.1| protein-L-isoaspartate O-methyltransferase [Streptomyces sp. SPB78]
          Length = 336

 Score = 39.0 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++        G  V+E+GAG G    +L    G   V  ++ D +     +   +
Sbjct: 113 PSLMARMLTGLDVRPGDRVLEVGAGTGWNAGLLCHRLGEDLVTTVDLDTEITESARAHLA 172

Query: 92  QHPNRLEIIQDDALKVDFEK 111
           +   R E+   D ++    +
Sbjct: 173 RAGFRPEVGTGDGMRGWPAR 192


>gi|239946188|ref|ZP_04698125.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239985731|ref|ZP_04706395.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
 gi|239992661|ref|ZP_04713325.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
 gi|291449638|ref|ZP_06589028.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291352585|gb|EFE79489.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 275

 Score = 39.0 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQF-----FPILKDISSQ-- 92
            + G+  G + ++IGAG G + + LL   G   V+ +++D +F      P L+ + +   
Sbjct: 47  RALGAGPGWSCLDIGAGTGTVCRRLLGEAGVASVLAVDRDVRFLDARPAPGLRTLQADVT 106

Query: 93  ----HPNRLEIIQDDALKVDFEK 111
                P    ++    + +   +
Sbjct: 107 DPGFAPGSFRLVHARFVLMHLPE 129


>gi|242005667|ref|XP_002423684.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212506860|gb|EEB10946.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 276

 Score = 39.0 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
               I ++E+G G GNL   L+       K+   +   +    +K+     P +L + Q 
Sbjct: 79  LSKNIKILELGCGVGNLIFPLIEENIEGIKIFACDFSPRAVQFVKNHKLFDPQKLSVFQA 138

Query: 103 DALKVD 108
           D  K D
Sbjct: 139 DITKTD 144


>gi|149915799|ref|ZP_01904324.1| protein-L-isoaspartate O-methyltransferase, putative [Roseobacter
           sp. AzwK-3b]
 gi|149810381|gb|EDM70226.1| protein-L-isoaspartate O-methyltransferase, putative [Roseobacter
           sp. AzwK-3b]
          Length = 217

 Score = 39.0 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
              L K+ +S        V+++G+  G  +  ++   A  V+ +E+D+      + + S+
Sbjct: 64  PRTLSKLLDSLDIRSSELVLDVGSALGY-SAAVIARMAEAVVAVEEDRDMANEAQGLLSE 122

Query: 93  H-PNRLEIIQD 102
           H  + + +   
Sbjct: 123 HGADNVIVHHG 133


>gi|310816101|ref|YP_003964065.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS
           [Ketogulonicigenium vulgare Y25]
 gi|308754836|gb|ADO42765.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS
           [Ketogulonicigenium vulgare Y25]
          Length = 402

 Score = 39.0 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHP 94
           + + +  G+  G  V+EIG G G   +        +V  +   Q+   F   +       
Sbjct: 175 QSMVDLIGAQPGDHVLEIGCGWGGFAEYAAKERGLRVTCLTISQEQFKFATARMARQGLS 234

Query: 95  NRLEIIQDD 103
           +R+ I   D
Sbjct: 235 DRVTIKLQD 243


>gi|229553091|ref|ZP_04441816.1| possible cyclopropane-fatty-acyl-phospholipid synthase
           [Lactobacillus rhamnosus LMS2-1]
 gi|258540294|ref|YP_003174793.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           rhamnosus Lc 705]
 gi|229313588|gb|EEN79561.1| possible cyclopropane-fatty-acyl-phospholipid synthase
           [Lactobacillus rhamnosus LMS2-1]
 gi|257151970|emb|CAR90942.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           rhamnosus Lc 705]
          Length = 393

 Score = 39.0 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SS 91
           LN +  I        G T+++IG G G L           V+ I   ++ F ++ D   +
Sbjct: 153 LNKIDHILRKLNPQPGRTLLDIGCGWGTLMLRAAKTYHLHVVGITLSKEQFKLVSDRIEA 212

Query: 92  QHPNRL-EIIQDDALKVDFEKF 112
           +H N + EI+  D  ++D E F
Sbjct: 213 EHLNDVAEILYMDYRELDREPF 234


>gi|229141831|ref|ZP_04270359.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST26]
 gi|228641667|gb|EEK97970.1| RRNA adenine dimethylase [Bacillus cereus BDRD-ST26]
          Length = 90

 Score = 39.0 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 34 NILKK-IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
          NIL K + ++        ++E+G G G+ T+ ++    ++   I
Sbjct: 25 NILAKAMVDAIDFDVAKCIVELGPGTGSFTKEIMKRKKKRTTFI 68


>gi|229185031|ref|ZP_04312221.1| hypothetical protein bcere0004_25890 [Bacillus cereus BGSC 6E1]
 gi|228598506|gb|EEK56136.1| hypothetical protein bcere0004_25890 [Bacillus cereus BGSC 6E1]
          Length = 247

 Score = 39.0 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
              +++E+GAG G   + +  L  +   V     +  P L   + +H  N +EI   D  
Sbjct: 41  PFQSMLELGAGNGGFARAMSNLNVKMTTV-----ELVPELVMFAKEHSTNDIEIHCADFY 95

Query: 106 KVDFEKFFNI 115
           K++FE+ F+I
Sbjct: 96  KINFEEKFDI 105


>gi|269127975|ref|YP_003301345.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Thermomonospora curvata DSM 43183]
 gi|268312933|gb|ACY99307.1| Protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Thermomonospora curvata DSM 43183]
          Length = 267

 Score = 39.0 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             I+ ++ ++     G+ V+E+G G G    L   LL  G + V  +E D       +  
Sbjct: 73  PEIVVEMLKALRLEAGMRVLEVGTGSGWNAALLAHLL--GPQNVTTVEVDATLAVQARRA 130

Query: 90  SSQHPNRLEIIQDD 103
             +    + ++ DD
Sbjct: 131 LHRAGYPVTVVADD 144


>gi|224476883|ref|YP_002634489.1| hypothetical protein Sca_1399 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|229892073|sp|B9DN09|Y1399_STACT RecName: Full=Uncharacterized methyltransferase Sca_1399
 gi|222421490|emb|CAL28304.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 207

 Score = 39.0 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 19/105 (18%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
                V+EIGAG GNLT ML   G R+V  I+       I  +  +             L
Sbjct: 42  TAEGRVLEIGAGTGNLTLMLKDKG-REVSAIDPSDDMRAIANETKN-------------L 87

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            V +  FF+I             I T   F+ +  +      +++
Sbjct: 88  DVQYGHFFDIP-----FDQPFDYIVTSFAFHHVKPEEKSDAIKTM 127


>gi|199597472|ref|ZP_03210902.1| Cyclopropane fatty acid synthase related methyltransferase
           [Lactobacillus rhamnosus HN001]
 gi|199591732|gb|EDY99808.1| Cyclopropane fatty acid synthase related methyltransferase
           [Lactobacillus rhamnosus HN001]
          Length = 393

 Score = 39.0 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SS 91
           LN +  I        G T+++IG G G L           V+ I   ++ F ++ D   +
Sbjct: 153 LNKIDHILRKLNPQPGRTLLDIGCGWGTLMLRAAKTYHLHVVGITLSKEQFKLVSDRIEA 212

Query: 92  QHPNRL-EIIQDDALKVDFEKF 112
           +H N + EI+  D  ++D E F
Sbjct: 213 EHLNDVAEILYMDYRELDREPF 234


>gi|118478168|ref|YP_895319.1| N-methyl-transferase-related protein [Bacillus thuringiensis str.
           Al Hakam]
 gi|118417393|gb|ABK85812.1| N-methyl-transferase-related protein [Bacillus thuringiensis str.
           Al Hakam]
          Length = 261

 Score = 39.0 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
              +++E+GAG G   + +  L  +   V     +  P L   + +H  N +EI   D  
Sbjct: 55  PFQSMLELGAGNGGFARAMSNLNVKMTTV-----ELVPELVMFAKEHSTNDIEIHCADFY 109

Query: 106 KVDFEKFFNI 115
           K++FE+ F+I
Sbjct: 110 KINFEEKFDI 119


>gi|13471201|ref|NP_102770.1| protein-L-isoaspartate O-methyltransferase [Mesorhizobium loti
           MAFF303099]
 gi|14021945|dbj|BAB48556.1| protein-L-isoaspartate O-methyltransferase [Mesorhizobium loti
           MAFF303099]
          Length = 222

 Score = 39.0 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +L++ + L K+ + +      + +++G G G     +L+  AR V+ +E D         
Sbjct: 65  YLMEASPLAKLMQLAEINATDSALDVGCGTGY-ASAILSRLARSVVALESDSALAQTATS 123

Query: 89  ISSQH-PNRLEIIQD 102
             S      + ++Q 
Sbjct: 124 TLSGLGYGNVTVVQG 138


>gi|333027044|ref|ZP_08455108.1| putative O-methyltransferase [Streptomyces sp. Tu6071]
 gi|332746896|gb|EGJ77337.1| putative O-methyltransferase [Streptomyces sp. Tu6071]
          Length = 336

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ ++        G  V+E+GAG G    +L    G   V  ++ D +     +   +
Sbjct: 113 PSLMARMLTGLDVRPGDRVLEVGAGTGWNAGLLCHRLGEDLVTTVDLDTEITESARAHLA 172

Query: 92  QHPNRLEIIQDDALKVDFEK 111
           +   R E+   D ++    +
Sbjct: 173 RAGFRPEVGTGDGMRGWPAR 192


>gi|303233714|ref|ZP_07320368.1| ribosomal protein L11 methyltransferase [Finegoldia magna BVS033A4]
 gi|302495148|gb|EFL54900.1| ribosomal protein L11 methyltransferase [Finegoldia magna BVS033A4]
          Length = 307

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L +LN++ KI            ++IG G G L+ +   LGA++V   + D     I   +
Sbjct: 163 LQELNLIDKIV-----------LDIGCGSGILSVVSSKLGAKEVFATDIDP--LAIKATL 209

Query: 90  SSQHPNRLEIIQD 102
            + + N++  I  
Sbjct: 210 ENANLNKISNINA 222


>gi|256619450|ref|ZP_05476296.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis ATCC
           4200]
 gi|256598977|gb|EEU18153.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis ATCC
           4200]
          Length = 315

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      K+    +P    + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASRYLGAKDVYAYDLDEVAVATAKENMDLNPIAADVHVSAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|271969825|ref|YP_003344021.1| type 12 methyltransferase [Streptosporangium roseum DSM 43021]
 gi|270513000|gb|ACZ91278.1| methyltransferase type 12 [Streptosporangium roseum DSM 43021]
          Length = 234

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDALK 106
           +++EIGAG G +T  L      ++  +E       +L    +  P    R+ ++  DAL 
Sbjct: 36  SILEIGAGTGLITTSLADWTPAEIFALEPSAGMRAMLLSRLNARPELLKRVTVLPCDALS 95

Query: 107 VDFEK 111
           V+ ++
Sbjct: 96  VELDE 100


>gi|218289362|ref|ZP_03493596.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240468|gb|EED07649.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 449

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-----DQQFFPILKDI 89
             ++   +   VI+   G G +T +L    AR V V E      D +    L  +
Sbjct: 295 VRAAEVRETDVVIDAYCGIGVITLLLAERAARAVGVEEVEDAITDARANAKLNRL 349


>gi|197336015|ref|YP_002156869.1| protein-L-isoaspartate O-methyltransferase [Vibrio fischeri MJ11]
 gi|238690258|sp|B5FAF3|PIMT_VIBFM RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|197317505|gb|ACH66952.1| protein-L-isoaspartate O-methyltransferase [Vibrio fischeri MJ11]
          Length = 208

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+E+G G G  T +L  L    V  IE+       L+  + +
Sbjct: 61  PYIVAKMTELLELTPTSNVLEVGTGSGYQTAVLAKL-VEHVNSIER----IKSLQWNAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L+I        D  K +    P    I+     +I   LLF  
Sbjct: 116 LLKQLDIYNVSTKHGDGWKGWESKGPFDAIIVTAAAESIPNDLLFQL 162


>gi|167535945|ref|XP_001749645.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771793|gb|EDQ85454.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1135

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 36   LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQH 93
            +  I        G  V+E G G G+LT  L      +  V   D  QQ   I +D  ++H
Sbjct: 1029 IAMICYQLDLCAGSRVLETGTGSGSLTHALARAVGPQGRVFSFDFHQQRVEIARDEFARH 1088

Query: 94   P-NRLEIIQDDALKVDFEK--------FFNISSPIRIIANL 125
                +++   DA   D           FF++  P   + N 
Sbjct: 1089 GLTNVQVAHADATMPDAWGLHEEVDAVFFDLPKPHLALDNA 1129


>gi|20092728|ref|NP_618803.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
 gi|19918019|gb|AAM07283.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
          Length = 323

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 81/243 (33%), Gaps = 37/243 (15%)

Query: 29  FL----LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           FL     +   + K+    G      V+++GAGPG L   L +  A  V  +E       
Sbjct: 84  FLERSNKNPQRVAKVFSDLGVGPASRVLDVGAGPGTLAVPLASRCAH-VTAVEPAAGMVE 142

Query: 85  ILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF-------N 136
           ++K+ + +     LEI+     + +      +S P  ++    Y++G   +         
Sbjct: 143 VMKEFAQKEGVENLEIVSK---RWEDIDPAELSGPYDVV-FASYSLGMPDIRAAVEKMCK 198

Query: 137 WISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFF 196
             +      ++   +   Q  + +   A     +                   I P++  
Sbjct: 199 LATKRVCLYWFLGSSPWEQWMI-DLWPALHGQEYRSGPKADV--LFHVLYDMGIYPNMET 255

Query: 197 PS-------PKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
                    P   + V +F    +      ++ +KI +E        L   LK+ GGE +
Sbjct: 256 LQLLYTRTFPDFDAAVENFKREYH---VETDAQEKILRE-------YLSSVLKKEGGEFV 305

Query: 250 LHQ 252
           L +
Sbjct: 306 LSE 308


>gi|326427717|gb|EGD73287.1| hypothetical protein PTSG_12239 [Salpingoeca sp. ATCC 50818]
          Length = 426

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            +   + G  V++IG G G L+ +    GARKVI +E    F+   + + + +     I 
Sbjct: 125 AADAVIKGGVVMDIGCGSGLLSLLSARTGARKVIAVEA-SDFYEAAEKVIAANGYSECI- 182

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
             D L    E   ++     I++     +GT L+F ++
Sbjct: 183 --DVLHSRVEDVEDVEQVDCIVSEW---MGTMLIFEFM 215


>gi|311278492|ref|YP_003940723.1| methyltransferase small [Enterobacter cloacae SCF1]
 gi|308747687|gb|ADO47439.1| methyltransferase small [Enterobacter cloacae SCF1]
          Length = 245

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 40/129 (31%), Gaps = 18/129 (13%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNIL-----KKIA--ESSGSLDGITVIEIGAGPGNLTQ 63
           K++L       K    Q F+             I     +       +++IG G G L  
Sbjct: 5   KSVLRRNGFTFK----QFFVAHDRCAMKVGTDGILLGAWAPIARVNRILDIGTGSGLLAL 60

Query: 64  MLLTLGARKVI--VIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPI 119
           ML       V    +E D        +   + P   R+ + Q D   V        S   
Sbjct: 61  MLAQRTEASVTLDAVELDVDAAAQAAENVQESPWAQRIAVHQAD---VRDWIAGQNSRYD 117

Query: 120 RIIANLPYN 128
            I++N PY 
Sbjct: 118 LIVSNPPYY 126


>gi|300949434|ref|ZP_07163438.1| methyltransferase domain protein [Escherichia coli MS 116-1]
 gi|300954141|ref|ZP_07166608.1| methyltransferase domain protein [Escherichia coli MS 175-1]
 gi|301646947|ref|ZP_07246790.1| methyltransferase domain protein [Escherichia coli MS 146-1]
 gi|300318866|gb|EFJ68650.1| methyltransferase domain protein [Escherichia coli MS 175-1]
 gi|300451155|gb|EFK14775.1| methyltransferase domain protein [Escherichia coli MS 116-1]
 gi|301074872|gb|EFK89678.1| methyltransferase domain protein [Escherichia coli MS 146-1]
          Length = 396

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A     +    V++I  G G  + +L+  GA++V+ ++  ++     K +  ++   +E 
Sbjct: 25  ANILHLVKDKVVLDIACGEGYGSALLMKAGAKRVVGVDISEESIERAKKLFGKYD--VEY 82

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           I  DA  +  E++      I +      +I T  +F
Sbjct: 83  IVSDANTI-SERYGEDFFDIVVSIETIEHINTPDVF 117


>gi|297160394|gb|ADI10106.1| ubiquinone/menaquinone biosynthesis methylase [Streptomyces
           bingchenggensis BCW-1]
          Length = 214

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            V E+G GPG++T  L  LG   V  ++       I ++       R E+   DAL +  
Sbjct: 55  PVAELGCGPGHVTAHLRDLG-LDVFGVDLSPVMIDIAREAYPDL--RFEVGSMDALDLAD 111

Query: 110 EKFFNISSPIRIIANLPYNIGT 131
            +   I S    I   P N+ +
Sbjct: 112 GELNGIVSWYSAIHTPPQNLPS 133


>gi|325676083|ref|ZP_08155765.1| trans-aconitate 2-methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325553123|gb|EGD22803.1| trans-aconitate 2-methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 254

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNR 96
           +            ++++G G G +T++L       + + ++   +        +    + 
Sbjct: 22  RAVAGLDLEPDDRLLDVGCGDGYVTRLLAERLPEGRAVGVDASPRMIA----KADTASSN 77

Query: 97  LEIIQDDALKVDFEKFFNI 115
           ++ +  DA  + F   F++
Sbjct: 78  VQFVLADARDLPFRAEFDV 96


>gi|288904317|ref|YP_003429538.1| hypothetical protein GALLO_0094 [Streptococcus gallolyticus UCN34]
 gi|306830347|ref|ZP_07463517.1| adenine-specific methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325977312|ref|YP_004287028.1| site-specific DNA-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731042|emb|CBI12586.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|304427372|gb|EFM30474.1| adenine-specific methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325177240|emb|CBZ47284.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 318

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 11/80 (13%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPIL 86
           FL+  N+           D I ++EIG+G GNL Q LL   ++++  + IE D     + 
Sbjct: 100 FLI-ENLTD--------SDKIDLLEIGSGTGNLAQTLLNNSSKELNYLGIEVDDLLIDLS 150

Query: 87  KDISSQHPNRLEIIQDDALK 106
             I+    +  + IQ+DA++
Sbjct: 151 ASIAEVMDSDAQFIQEDAVR 170


>gi|288940502|ref|YP_003442742.1| type 11 methyltransferase [Allochromatium vinosum DSM 180]
 gi|288895874|gb|ADC61710.1| Methyltransferase type 11 [Allochromatium vinosum DSM 180]
          Length = 240

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80
          +I E    + G  V+E+G G   +T++L   LGAR+V   E D+
Sbjct: 20 RIVEELVEVAGRQVLELGCGAAWMTRLLATHLGARRVTATEVDR 63


>gi|9937226|gb|AAG02357.1|AF210249_16 polyketide synthase [Streptomyces verticillus]
          Length = 1841

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 34   NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISS 91
            ++L ++A        + V+E GAG G+LTQ L+T    ++     +  + F   L   ++
Sbjct: 1032 SLLDRLAADREPGRPLRVLEAGAGAGSLTQALVTRAPGRLDYHATDISRHFVTALGREAA 1091

Query: 92   QHPNRLEIIQDDALKV--DFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
            +    L+ ++   L +  D  +         ++  L     T  L   +  
Sbjct: 1092 RRG--LDFVRARVLDIARDPGEQGFAGERFDVVCGLDVVHATPDLRTTLGH 1140


>gi|312136431|ref|YP_004003768.1| protein-l-isoaspartate o-methyltransferase [Methanothermus fervidus
           DSM 2088]
 gi|311224150|gb|ADP77006.1| protein-L-isoaspartate O-methyltransferase [Methanothermus fervidus
           DSM 2088]
          Length = 217

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDIS 90
            +++  I E      G+ V+EIGAG G    ++  +  +   V  IE+ +  + + K+  
Sbjct: 61  PHMVAMICEVLDLKKGMKVLEIGAGCGYNAAVVAEIVGKEGHVYSIERIKSLYNMAKNNL 120

Query: 91  SQ--HPNRLEIIQDD 103
            +  + +R+ +I  D
Sbjct: 121 KRLGYDDRVTVIFGD 135


>gi|310640872|ref|YP_003945630.1| methyltransferase type 11 [Paenibacillus polymyxa SC2]
 gi|309245822|gb|ADO55389.1| Methyltransferase type 11 [Paenibacillus polymyxa SC2]
          Length = 191

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQ 92
          + K + ES    +   V E+GAG G +TQ +   T    KV++ EKD      LK     
Sbjct: 35 LAKNMIESIPWSEVHAVAELGAGTGAITQYIPSTTKIHPKVLLFEKDPTMQQSLKRRFPN 94

Query: 93 H 93
          +
Sbjct: 95 Y 95


>gi|307272832|ref|ZP_07554079.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0855]
 gi|306510446|gb|EFM79469.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX0855]
          Length = 315

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      K+    +P    + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASRYLGAKDVYAYDLDEVVVAAAKENMDLNPIAADVHVSAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|269792238|ref|YP_003317142.1| ribosomal L11 methyltransferase [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269099873|gb|ACZ18860.1| ribosomal L11 methyltransferase [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 288

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
              G T++++G G G L    + LGA  V   + D    P L++          ++  + 
Sbjct: 148 LGPGFTLLDVGTGSGILAIGAIKLGAGTVYARDLDGTVLPELRENLELNHLEGAVQFEEG 207

Query: 103 DALK 106
           D LK
Sbjct: 208 DLLK 211


>gi|269120479|ref|YP_003308656.1| methyltransferase type 11 [Sebaldella termitidis ATCC 33386]
 gi|268614357|gb|ACZ08725.1| Methyltransferase type 11 [Sebaldella termitidis ATCC 33386]
          Length = 186

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP 94
           +K+ ++SG ++G TV+EIG G G  T  +  +   + K+   +         +   +   
Sbjct: 38  EKLIKASGIMEGQTVLEIGCGSGYFTAEISKILGSSGKLYSTDIHPAAIEETRKKVNSLG 97

Query: 95  -NRLEIIQDDALKVDFEK-FFNISSPIRIIANL--PYNIGTRLLFNWISADTWPPFWESL 150
              + +  D+AL   FE  FF++     ++ +   P    +  +F  + +      W  +
Sbjct: 98  LKNVAVTMDNALNSSFEDSFFDVVLLYGVVPSPVIPMEDISDEIFRLLKSGGIYAIWTKM 157

Query: 151 TLLFQKEV 158
                K V
Sbjct: 158 PFWKPKTV 165


>gi|167562729|ref|ZP_02355645.1| Methyltransferase type 11 [Burkholderia oklahomensis EO147]
          Length = 256

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 46/171 (26%), Gaps = 25/171 (14%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
                  G  ++EIG G G  ++ +         ++  D      L  +     + + ++
Sbjct: 35  RFLQPSPGEKILEIGGGSGYFSRAISAALGPSGRLVVTDP-SIEQLDALRGAPDSNIRVV 93

Query: 101 Q--DDALKVDFEKFFNISSPIRIIANLPYNIGTR------------LLFNWISADTWPPF 146
           Q   DAL +D   F  + S   I                       ++++  +      +
Sbjct: 94  QQAADALHLDTRDFDAVWSRGAIHHVTDKTSAFAACARHVRPGARLVIYDIFAGTPLARY 153

Query: 147 WESL----------TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
           ++                 +E  + + A           V   W   +   
Sbjct: 154 FDGFIAKSCSTGHEVAFLSEEFAKTLCALTGWSEPRFCEVTVPWEFDSRKA 204


>gi|153004217|ref|YP_001378542.1| type 11 methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152027790|gb|ABS25558.1| Methyltransferase type 11 [Anaeromyxobacter sp. Fw109-5]
          Length = 217

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ 92
            ++  + G   G    + GAGPG     L        +V  I+ D +   +L+  + +
Sbjct: 49  DEVVSALGLRPGDVACDAGAGPGYFAIRLARAVGPTGRVHAIDVDARMIALLEQRARE 106


>gi|114776315|ref|ZP_01451360.1| protein-L-isoaspartate O-methyltransferase [Mariprofundus
           ferrooxydans PV-1]
 gi|114553145|gb|EAU55543.1| protein-L-isoaspartate O-methyltransferase [Mariprofundus
           ferrooxydans PV-1]
          Length = 209

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--IS 90
             ++ ++ E     +   V+EIG G G  T +L  +  R+V  IE+ +      +    +
Sbjct: 61  PYMVARMTELLELKETDRVLEIGTGCGYQTAVLSRIC-RRVYSIERIEALHNRARQNLRA 119

Query: 91  SQHPNRLEIIQDDAL 105
           ++H N + +   D L
Sbjct: 120 ARHANVM-LKCGDGL 133


>gi|17570359|ref|NP_508889.1| hypothetical protein Y34B4A.7 [Caenorhabditis elegans]
 gi|15617879|gb|AAF59637.2| Hypothetical protein Y34B4A.7 [Caenorhabditis elegans]
          Length = 369

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 39  IAESSGSLDGIT----VIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS-Q 92
           I  S   +D       ++EIG G G+L   L  L  +  + V+E D     I +   +  
Sbjct: 163 IVSSLSLVDSDNDGKAILEIGLGGGSLDMFLHQLNPKLNITVVELDPVVVGIARKWFNVV 222

Query: 93  HPNRLEIIQDDALKVDFEK 111
           + N    I  D LK   E 
Sbjct: 223 NDNTRRTITADGLKFIKEA 241


>gi|330813626|ref|YP_004357865.1| ribosomal RNA small subunit methyltransferase D [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486721|gb|AEA81126.1| ribosomal RNA small subunit methyltransferase D [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 187

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
           ++++I +G G+     L+ GA  V  IE D++ F +LK+        N   +I  D LK+
Sbjct: 50  SILDIFSGSGSFGIECLSRGASHVTFIENDKKSFEVLKNNIQNFSILNEGNLIFGDFLKI 109

Query: 108 DFEKFFNISSPIRIIANLPYN 128
             +  F+++ P  I  + P+ 
Sbjct: 110 QLD--FSLTKPNLIFLDPPFQ 128


>gi|327459189|gb|EGF05537.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 317

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
             DG TV+++G G G L+     LGA+ +   + D+    + ++    +P+   + +   
Sbjct: 169 LRDGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPDMENIHVAPG 228

Query: 103 DALK 106
           D L+
Sbjct: 229 DLLR 232


>gi|310821873|ref|YP_003954231.1| hypothetical protein STAUR_4624 [Stigmatella aurantiaca DW4/3-1]
 gi|309394945|gb|ADO72404.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 238

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQDDALKVDF 109
           +++G G G   + L  L  ++V+ ++  +      +   +  P    L  +Q +AL + +
Sbjct: 60  LDVGCGTGAAMRHLRPLCRQEVVGVDLSRGMLEEARRRQADAPGEATLTFVQGNALDLTY 119

Query: 110 EKFFN 114
           E  F+
Sbjct: 120 EAEFD 124


>gi|301091783|ref|XP_002896068.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262095022|gb|EEY53074.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 195

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--I 89
           D +++ KI E +       + ++G G G +          +   +E ++      ++   
Sbjct: 37  DRDVVSKIVEIARVTPSDVLFDLGCGDGRICIEAAKCYGARSRGVEIEKYLIKRFREQIA 96

Query: 90  SSQHPNRLEIIQDDALKVDFEK 111
           +++    + +   D L  D  +
Sbjct: 97  ANELQELVSVSHGDLLDEDLSE 118


>gi|257070154|ref|YP_003156409.1| ubiquinone/menaquinone biosynthesis methylase [Brachybacterium
           faecium DSM 4810]
 gi|256560972|gb|ACU86819.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Brachybacterium faecium DSM 4810]
          Length = 272

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 5/138 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQ 101
               G+ ++++G+G G +T  L  L G   V  +E  ++   + + ++  Q    +E++ 
Sbjct: 38  HLRPGMELLDVGSGAGTITAGLARLVGPAHVTALEVSEEAAALTRAELGRQGLGEVEVVV 97

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            DA       F + S  +     +  ++   +           P           E    
Sbjct: 98  GDA---HHLPFADGSVDVVHAHQVLQHVPGPVRALAEFRRVTRPGGTVAVRDSDYEGFRW 154

Query: 162 ITAQKNSPHYGRLSVLTG 179
              +     +  L +   
Sbjct: 155 WPERPGIERWLALYLRAA 172


>gi|254167421|ref|ZP_04874273.1| hypothetical protein ABOONEI_2234 [Aciduliprofundum boonei T469]
 gi|197623684|gb|EDY36247.1| hypothetical protein ABOONEI_2234 [Aciduliprofundum boonei T469]
          Length = 201

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 21  PKKYMGQNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           PK  + Q F     I   I   A S G ++   + + GAG G  T     LGARK+  +E
Sbjct: 19  PKASLEQYF-TPATIASDIMFLAYSLGDIEEKILADFGAGTGIFTIGACLLGARKIFSVE 77

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
            D     ILK    ++    EI+  +  + + E
Sbjct: 78  IDVGAIEILKKNLEKYKCSAEILNMNVEEFNSE 110


>gi|183983385|ref|YP_001851676.1| methyltransferase (methylase) [Mycobacterium marinum M]
 gi|183176711|gb|ACC41821.1| methyltransferase (methylase) [Mycobacterium marinum M]
          Length = 219

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 13/118 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQ 92
            L ++  ++    G T+ E G G G L   LL      V  +  D       +     + 
Sbjct: 29  TLDRLVANAALAPGQTIFEFGCGTGKLAANLLADLPASVNYVGVDISPVMINLATSRLAP 88

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             +R ++              + S P+         + +  +F+ +         + L
Sbjct: 89  WADRAKV-----------TLVDGSLPLPAGDGSADRVLSTFVFDLLDEAYARAVLDDL 135


>gi|168025432|ref|XP_001765238.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683557|gb|EDQ69966.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1042

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAE 262
                     N I    + ++K+ + +  +R KT+ ++ + L       +A +E  +RAE
Sbjct: 831 EAFSRLTTLENRIEEREKEMEKLLRSSNEQRMKTV-EAFEALLDSE--RKAKMEAAMRAE 887

Query: 263 NLSIE 267
            LS++
Sbjct: 888 TLSVQ 892


>gi|293365946|ref|ZP_06612649.1| ribosomal protein L11 methyltransferase [Streptococcus oralis ATCC
           35037]
 gi|307702348|ref|ZP_07639306.1| ribosomal protein L11 methyltransferase [Streptococcus oralis ATCC
           35037]
 gi|291315624|gb|EFE56074.1| ribosomal protein L11 methyltransferase [Streptococcus oralis ATCC
           35037]
 gi|307624151|gb|EFO03130.1| ribosomal protein L11 methyltransferase [Streptococcus oralis ATCC
           35037]
          Length = 316

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+K+   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKKIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|283786192|ref|YP_003366057.1| DNA-binding protein [Citrobacter rodentium ICC168]
 gi|282949646|emb|CBG89265.1| putative DNA-binding protein [Citrobacter rodentium ICC168]
          Length = 245

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IG G G L  ML     + VI   +E D +     ++  +  P  +R+ 
Sbjct: 40  APVAGVKRILDIGTGSGLLALMLAQRTDKSVIIDAVELDDEAAAQAQENVAGSPWADRVS 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +       +             II+N PY 
Sbjct: 100 VYTG---AIQHWAARQTGKFDLIISNPPYY 126


>gi|270293093|ref|ZP_06199304.1| ribosomal protein L11 methyltransferase [Streptococcus sp. M143]
 gi|270279072|gb|EFA24918.1| ribosomal protein L11 methyltransferase [Streptococcus sp. M143]
          Length = 316

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+K+   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKKIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|269839604|ref|YP_003324296.1| protein-L-isoaspartate O-methyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269791334|gb|ACZ43474.1| protein-L-isoaspartate O-methyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 221

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISS 91
            +++ K+ E+        V+E+G G G  T  LL   +R V  +E+      + + +++ 
Sbjct: 62  PSLVAKMIEALELKGSEKVLEVGTGYGFQT-ALLAYLSRCVWSMERWPDIAEVARANLAR 120

Query: 92  QHPNRLEIIQDD 103
           Q     +++  D
Sbjct: 121 QGVGNAQVVVGD 132


>gi|229139450|ref|ZP_04268021.1| hypothetical protein bcere0013_25600 [Bacillus cereus BDRD-ST26]
 gi|228643997|gb|EEL00258.1| hypothetical protein bcere0013_25600 [Bacillus cereus BDRD-ST26]
          Length = 219

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  IKNENWLQEVAKEVQEQIGYPFQTMLELGAGNGGFARAMSNLDVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  + +EI   D  K++FE+ F++
Sbjct: 76  VMFAKEHSTSDIEIHCADFYKINFEEKFDV 105


>gi|168183235|ref|ZP_02617899.1| methyltransferase family protein [Clostridium botulinum Bf]
 gi|237796135|ref|YP_002863687.1| type 11 methyltransferase [Clostridium botulinum Ba4 str. 657]
 gi|182673699|gb|EDT85660.1| methyltransferase family protein [Clostridium botulinum Bf]
 gi|229263321|gb|ACQ54354.1| methyltransferase type 11 [Clostridium botulinum Ba4 str. 657]
          Length = 1088

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 35  ILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           IL  I +S    +  I V+E+G G G  T             I+  ++    L      +
Sbjct: 484 ILDNIIKSLFNKISKIKVLELGPGVGIFTDYYRKQEVEDYTAIDISEKSVKELSRSYEDY 543

Query: 94  PNRLEIIQDDA 104
               + I  D 
Sbjct: 544 ----KFINGDI 550


>gi|206973832|ref|ZP_03234750.1| putative methyltransferase [Bacillus cereus H3081.97]
 gi|206747988|gb|EDZ59377.1| putative methyltransferase [Bacillus cereus H3081.97]
          Length = 245

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  IKNENWLQEVAKEVQEQIGYPFQTMLELGAGNGGFARAMSNLDVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  + +EI   D  K++FE+ F++
Sbjct: 76  VMFAKEHSTSDIEIHCADFYKINFEEKFDV 105


>gi|217960253|ref|YP_002338813.1| putative methyltransferase [Bacillus cereus AH187]
 gi|222096313|ref|YP_002530370.1| n-methyl-transferase-related protein [Bacillus cereus Q1]
 gi|217067186|gb|ACJ81436.1| putative methyltransferase [Bacillus cereus AH187]
 gi|221240371|gb|ACM13081.1| N-methyl-transferase-related protein [Bacillus cereus Q1]
          Length = 245

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  IKNENWLQEVAKEVQEQIGYPFQTMLELGAGNGGFARAMSNLDVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  + +EI   D  K++FE+ F++
Sbjct: 76  VMFAKEHSTSDIEIHCADFYKINFEEKFDV 105


>gi|194365731|ref|YP_002028341.1| Cyclopropane-fatty-acyl-phospholipid synthase [Stenotrophomonas
           maltophilia R551-3]
 gi|194348535|gb|ACF51658.1| Cyclopropane-fatty-acyl-phospholipid synthase [Stenotrophomonas
           maltophilia R551-3]
          Length = 419

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           L +I +      G  V+EIG G G             V       +   +  +   ++  
Sbjct: 179 LDRICQQLQLKPGDHVVEIGTGWGGFAVHAAQHYGCHVTTTTISAEQHALATERVKAAGL 238

Query: 94  PNRLEIIQDD 103
             R+ ++  D
Sbjct: 239 QGRVTLLMQD 248


>gi|466999|gb|AAA17184.1| pimT [Mycobacterium leprae]
          Length = 280

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I        G  V+E GAG G LT  LL       +VI  E         +   S  
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPQGQVISYELRTDHAEHARRNVSNF 147


>gi|84623466|ref|YP_450838.1| hypothetical protein XOO_1809 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84367406|dbj|BAE68564.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 356

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 8/135 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +     GA    V     Q   IL+    +  + +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERHPGASITAVSNSRPQRAHILEQCRVRGLSNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
             D  AL +    F  + S         Y      + NW++    P     + +   +++
Sbjct: 186 TADVNALALPPGSFDRVVSVEMFEHMRNYRELLARVGNWMA----PGGKLFVHIFCHRDL 241

Query: 159 GERITAQKNSPHYGR 173
                        GR
Sbjct: 242 AYPFEVAGKDNWMGR 256


>gi|15827681|ref|NP_301944.1| hypothetical protein ML1313 [Mycobacterium leprae TN]
 gi|221230158|ref|YP_002503574.1| hypothetical protein MLBr_01313 [Mycobacterium leprae Br4923]
 gi|4200266|emb|CAA22923.1| hypothetical protein MLCB2533.09 [Mycobacterium leprae]
 gi|13093232|emb|CAC31694.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933265|emb|CAR71408.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 281

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I        G  V+E GAG G LT  LL       +VI  E         +   S  
Sbjct: 88  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPQGQVISYELRTDHAEHARRNVSNF 147


>gi|84514952|ref|ZP_01002315.1| Mg-protoporphyrin IX methyl transferase [Loktanella vestfoldensis
           SKA53]
 gi|84511111|gb|EAQ07565.1| Mg-protoporphyrin IX methyl transferase [Loktanella vestfoldensis
           SKA53]
          Length = 230

 Score = 38.6 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDISSQHPNRLE 98
           A+    L G  +++ G G G +   L   GA  V+ ++       I  K + +  P  + 
Sbjct: 52  AQLPDDLRGARILDAGCGTGAMAVELAQRGAD-VVAVDISPALVEIGAKRMPAGLPGTIT 110

Query: 99  IIQDDALK 106
            +  D L 
Sbjct: 111 WVAGDMLD 118


>gi|320539203|ref|ZP_08038874.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Serratia symbiotica str. Tucson]
 gi|320030841|gb|EFW12849.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Serratia symbiotica str. Tucson]
          Length = 248

 Score = 38.6 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKDISSQH--PNRLE 98
           +       V++IG+G G +  ML    A +V+   +E D+      +D   +   P R++
Sbjct: 43  APLAQAQRVLDIGSGSGLIALMLAQRSAAEVMIDAVELDEAAAEQARDNVQKSPWPQRIK 102

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +   D          + +    I++N PY
Sbjct: 103 VYAQDIYYY---AEHHAAQYDLIVSNPPY 128


>gi|330931844|ref|XP_003303559.1| hypothetical protein PTT_15813 [Pyrenophora teres f. teres 0-1]
 gi|311320381|gb|EFQ88351.1| hypothetical protein PTT_15813 [Pyrenophora teres f. teres 0-1]
          Length = 3980

 Score = 38.6 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 35   ILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI---EKDQQFFPILKDIS 90
            ++ +I    +     + + E+GAG G  T  +L             +    FF  ++D  
Sbjct: 1379 LIGRIVAQIAHRHPNLRIFEVGAGTGGATSCILPALGDTFSTYTYTDISAGFFNRVQDRF 1438

Query: 91   SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
              + NR+     D  +   E+ F   +   ++A+
Sbjct: 1439 QSYLNRMRFATYDVDRTPAEQGFEEHTYDIVVAS 1472


>gi|310799231|gb|EFQ34124.1| beta-ketoacyl synthase domain-containing protein [Glomerella
            graminicola M1.001]
          Length = 2633

 Score = 38.6 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 28   NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK---D--QQF 82
            NFL   N+ +++  SS +   + ++E+GAG G  T+ML+    +  I  E    D     
Sbjct: 1985 NFLT--NLAERLKASSHNQTTLRILEMGAGTGGATKMLVPTLVKLGIPFEYTFTDLSPSL 2042

Query: 83   FPILKDISSQHPNRLEIIQD 102
                +     +P+   ++ D
Sbjct: 2043 VAQARKKFKSYPSMKFLVHD 2062


>gi|296283821|ref|ZP_06861819.1| hypothetical protein CbatJ_09371 [Citromicrobium bathyomarinum
           JL354]
          Length = 253

 Score = 38.6 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 4/130 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
            +K+ + +    G+TV +IGAG G  T  L        +V+  + D+     L     + 
Sbjct: 63  ARKVMDMASIEPGMTVADIGAGEGYYTVRLAERVGEHGRVLAQDIDRGALERLGRRVER- 121

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
             RL+ +   A   D  +    S     + ++ + +     F W    +     + + + 
Sbjct: 122 -ERLDNVSIKAGAQDDPRLPEDSFNRVFMVHMYHEVAEPYAFLWRLWPSLEDGGKVIVVD 180

Query: 154 FQKEVGERIT 163
             +       
Sbjct: 181 IDRPTDRHGI 190


>gi|290967768|ref|ZP_06559321.1| methyltransferase small domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290782127|gb|EFD94702.1| methyltransferase small domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 252

 Score = 38.6 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 13/149 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
           GS+    V+++G G G +  +L   G R V  +E +     I     I +     + I  
Sbjct: 39  GSVPHSPVLDLGTGTGAIPLILTARGVRAVTALELNPIMADIAARNVILNHKEESIRIKH 98

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D  +    K+    S   + AN PY            A +  P            + E 
Sbjct: 99  GDYRQ--PGKWLKSGSFAAVYANPPYR------EKQRGAYSPVPGIRRARHEETATLAEV 150

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + A   +  YG    +         + DI
Sbjct: 151 LAAASFALKYGGYFRMVHI---VERLADI 176


>gi|258652604|ref|YP_003201760.1| type 11 methyltransferase [Nakamurella multipartita DSM 44233]
 gi|258555829|gb|ACV78771.1| Methyltransferase type 11 [Nakamurella multipartita DSM 44233]
          Length = 273

 Score = 38.6 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             ++G   G  V+++ AG GN +      GA  V   +   +   I +  +++    L  
Sbjct: 39  VAAAGIGPGQRVLDVAAGSGNASIPAAETGA-AVTASDLTPELLDIGERRAAERSLELTW 97

Query: 100 IQDDA 104
           ++ DA
Sbjct: 98  VEADA 102


>gi|66810371|ref|XP_638909.1| cyclopropane fatty acid synthase [Dictyostelium discoideum AX4]
 gi|60467516|gb|EAL65538.1| cyclopropane fatty acid synthase [Dictyostelium discoideum AX4]
          Length = 430

 Score = 38.6 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           N ++K+ + +       ++EIG G G L    +     +V  I
Sbjct: 188 NKIRKLIDQANLKKDHHLLEIGCGWGALAIEAVKRTGCRVTGI 230


>gi|332529323|ref|ZP_08405285.1| cyclopropane-fatty-acyl-phospholipid synthase [Hylemonella gracilis
           ATCC 19624]
 gi|332041240|gb|EGI77604.1| cyclopropane-fatty-acyl-phospholipid synthase [Hylemonella gracilis
           ATCC 19624]
          Length = 359

 Score = 38.6 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           E +G  DG  ++E+G G G+LT  +      AR   V   + Q   I+ +   ++   + 
Sbjct: 125 EHAGLADGQRILELGCGWGSLTLWMAEHYPQARITAVSNSNSQREHIMAEAKRRNLGNVN 184

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +I  D  + +  + ++    +  +  L +      +F  +     P     + +   + V
Sbjct: 185 VITCDMNRFEAPEHYD---RVVSVEMLEHMRNWDEIFRRVHGWLLPGGRFFMHVFVHRSV 241


>gi|328886553|emb|CCA59792.1| methyltransferase [Streptomyces venezuelae ATCC 10712]
          Length = 285

 Score = 38.6 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            + G   G   +++GAG G +++ LL   G   V+ +++D +F   L++   + P  L++
Sbjct: 54  RALGVGPGWRCLDVGAGTGTVSRRLLDEAGVAGVLAVDRDVRF---LRER--RVPG-LDV 107

Query: 100 IQDDA 104
           ++ D 
Sbjct: 108 LEADI 112


>gi|317502782|ref|ZP_07960888.1| ribosomal protein L11 methyltransferase [Prevotella salivae DSM
           15606]
 gi|315666093|gb|EFV05654.1| ribosomal protein L11 methyltransferase [Prevotella salivae DSM
           15606]
          Length = 305

 Score = 38.6 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 32  DLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +    + I  +     L    V++ G G G L  + L  GA+ V+  + D+      K  
Sbjct: 151 NHETTRMIVSTLLHFDLTDKRVLDCGCGTGILGIVALKYGAKSVVGYDIDEWSVENAKHN 210

Query: 90  SSQHP-NRLEIIQDDA 104
           +  +    +EI Q DA
Sbjct: 211 AEINNVENIEIYQGDA 226


>gi|308456601|ref|XP_003090729.1| hypothetical protein CRE_07092 [Caenorhabditis remanei]
 gi|308260966|gb|EFP04919.1| hypothetical protein CRE_07092 [Caenorhabditis remanei]
          Length = 308

 Score = 38.6 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 11/100 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEK-DQQF---------FP 84
           + KI + +   +    +++G G G     +      +K I IE  DQ F         F 
Sbjct: 137 ISKICDEARIGEHDVFVDLGCGVGQFVYFVAAYARCKKTIGIEISDQPFKFATEVSGYFE 196

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            L     +   + EI   D L+  +       + +  I N
Sbjct: 197 KLMAHFGKRFGKFEISHGDFLEEKYRALICEEATVLFINN 236


>gi|300712129|ref|YP_003737943.1| tRNA methyltransferase complex GCD14 subunit [Halalkalicoccus
           jeotgali B3]
 gi|299125812|gb|ADJ16151.1| tRNA methyltransferase complex GCD14 subunit [Halalkalicoccus
           jeotgali B3]
          Length = 237

 Score = 38.6 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
           G   G  V++ G G G L   +  +GA +VI  E++ +F  + ++    +   +R+E+  
Sbjct: 80  GIAAGDRVLDAGTGTGVLATYMGRVGA-EVITYERNPEFAEVARENVRLAGVTDRVEVRT 138

Query: 102 DD 103
            D
Sbjct: 139 GD 140


>gi|262273683|ref|ZP_06051496.1| protein-L-isoaspartate O-methyltransferase [Grimontia hollisae CIP
           101886]
 gi|262222098|gb|EEY73410.1| protein-L-isoaspartate O-methyltransferase [Grimontia hollisae CIP
           101886]
          Length = 206

 Score = 38.6 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L    V  +E+       L+ ++ +
Sbjct: 59  PYIVAKMTELLNLRHDSRVLEIGTGSGFQTCVLAQL-VEHVYSVER----IKQLQMVAKR 113

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              + E+        D  + +    P   I
Sbjct: 114 RFKQFELYNISTKHGDGWQGWASKGPFDAI 143


>gi|256372570|ref|YP_003110394.1| modification methylase, HemK family [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256009154|gb|ACU54721.1| modification methylase, HemK family [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 255

 Score = 38.6 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +    G+ V+++G G G +   L   G R +V   + D +   + ++        + ++ 
Sbjct: 77  AAVRTGMRVLDVGTGSGAIAISLALEGPRLEVTGSDVDPRALALARENVRATGALVTLV- 135

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
               +  + +     S   ++AN PY   + 
Sbjct: 136 ----RRSWFEGAEPESLDVVVANPPYVAASE 162


>gi|296822914|ref|XP_002850361.1| polyketide synthase [Arthroderma otae CBS 113480]
 gi|238837915|gb|EEQ27577.1| polyketide synthase [Arthroderma otae CBS 113480]
          Length = 3918

 Score = 38.6 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 9/138 (6%)

Query: 40   AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEKDQQFFPILKDISSQHPNR 96
            A+ +     + +IEIGAG G  T+M+L    +        +    FF   +   SQ+ +R
Sbjct: 1364 AQVAYRYPRMNIIEIGAGTGGSTRMILPTLDKAFSTYTFTDISSGFFEAAEKRFSQYSDR 1423

Query: 97   LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL------LFNWISADTWPPFWESL 150
            +     D  K   E+ F       ++A+   ++G  +      +   +    W    E  
Sbjct: 1424 MIFKTLDMEKDLSEQGFTEGHYDMVLASNVLHVGPDIDLTLSNVRKLVKPGGWLINMEVA 1483

Query: 151  TLLFQKEVGERITAQKNS 168
            T       G  ++     
Sbjct: 1484 TYFPSLREGFSMSGFPGW 1501


>gi|256393722|ref|YP_003115286.1| methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
 gi|256359948|gb|ACU73445.1| Methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
          Length = 220

 Score = 38.6 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 32  DLNIL--KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           + N+    +I  +       + +++G G G L Q L T  A  V+ ++         +  
Sbjct: 6   NHNVAHHARIVRAMPPN-CRSALDVGCGDGLLAQKLATR-ANWVVALDASADMAEQARRR 63

Query: 90  SSQHPNRLEIIQDDAL 105
           +++    +E+++ D L
Sbjct: 64  TAELD--VEVVEADFL 77


>gi|196013265|ref|XP_002116494.1| hypothetical protein TRIADDRAFT_60467 [Trichoplax adhaerens]
 gi|190581085|gb|EDV21164.1| hypothetical protein TRIADDRAFT_60467 [Trichoplax adhaerens]
          Length = 322

 Score = 38.6 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
          I +++  +    V+++GAG G L+   +  GARKV  +E
Sbjct: 19 ILKNANRIRNKVVLDVGAGTGILSHFCVEAGARKVYAVE 57


>gi|124027514|ref|YP_001012834.1| protein-L-isoaspartate O-methyltransferase [Hyperthermus butylicus
           DSM 5456]
 gi|209573189|sp|A2BKH8|PIMT_HYPBU RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|123978208|gb|ABM80489.1| protein-L-isoaspartate O-methyltransferase [Hyperthermus butylicus
           DSM 5456]
          Length = 241

 Score = 38.6 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 14/116 (12%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR---------KVIVIEKDQQFF 83
            +++  + E +    G+ V+E+GAG G    ++  + A           V  IE+  +  
Sbjct: 71  PHMVAMMTEYADLKPGMKVLEVGAGSGYHAAVMAEVVAPSDEPREHWGHVYTIERIPELA 130

Query: 84  PILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
              +     + + +R+ +I  D  +   EK       I + A  P +I   L+   
Sbjct: 131 EFARRNLERAGYADRVTVIVGDGSRGYPEKA--PYDRIIVTAAAP-DIPGPLIDQL 183


>gi|298504679|gb|ADI83402.1| SAM-dependent methyltransferase, putative [Geobacter
          sulfurreducens KN400]
          Length = 226

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
          ++ I        G  V+E+G G G +T+ L    AR V+ ++ D++
Sbjct: 10 IRTITSHCDLR-GAEVLEVGCGTGRITRDLARHAAR-VVAVDPDER 53


>gi|295135063|ref|YP_003585739.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Zunongwangia profunda SM-A87]
 gi|294983078|gb|ADF53543.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Zunongwangia profunda SM-A87]
          Length = 214

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           E     +G  V+EIG G G  T +L  LGAR V  IE+ ++ +
Sbjct: 75  ELLEIKEGENVLEIGTGSGYQTAVLCELGAR-VYSIERQRELY 116


>gi|253574012|ref|ZP_04851354.1| methyltransferase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846489|gb|EES74495.1| methyltransferase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 255

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +  G   G+ V+E+G G G  T  LL     +V  +++        +  + Q   ++E 
Sbjct: 27  IQFVGIAPGMRVLEVGCGTGR-TACLLAQMGAQVTAMDQSIVMLEKAEHRAQQQQLQIEW 85

Query: 100 IQDDA 104
           IQ D 
Sbjct: 86  IQGDI 90


>gi|255532860|ref|YP_003093232.1| methyltransferase small [Pedobacter heparinus DSM 2366]
 gi|262828558|sp|C6Y2G0|TRMN6_PEDHD RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|255345844|gb|ACU05170.1| methyltransferase small [Pedobacter heparinus DSM 2366]
          Length = 234

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKD--ISSQHPNRL 97
             +G  +   +++IG G G +  ML       ++  +E D+Q         +++    RL
Sbjct: 30  AVAGKNEAANILDIGTGTGVIALMLAQRFPNALVDAVEIDEQAALTATKNALNAPFSGRL 89

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +++         EK++++     I++N PY +
Sbjct: 90  KVLHSAIEDYLPEKYYDL-----IVSNPPYFV 116


>gi|258512517|ref|YP_003185951.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479243|gb|ACV59562.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 288

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 41/123 (33%), Gaps = 10/123 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-------KDQQFFPILKDI 89
           + I  +     G+ ++++G G G L   +  + +  V  I+        D++    L   
Sbjct: 41  RAILATLPMRPGMHIVDVGCGYGALLFDIAAMHSVHVTGIDHSPAALAVDEEILSTLAAR 100

Query: 90  SSQHPN-RLEIIQDDALKVDFEKFFNIS--SPIRIIANLPYNIGTRLLFNWISADTWPPF 146
            +      + + + DA+ +     F     S                +F  + ++ +   
Sbjct: 101 GALKDGASITLQRGDAMALPLPDGFADGVVSRFLFQHIPNSRTAAAEMFRILRSEGFVCA 160

Query: 147 WES 149
            +S
Sbjct: 161 IDS 163


>gi|164686779|ref|ZP_02210807.1| hypothetical protein CLOBAR_00374 [Clostridium bartlettii DSM
           16795]
 gi|164604169|gb|EDQ97634.1| hypothetical protein CLOBAR_00374 [Clostridium bartlettii DSM
           16795]
          Length = 248

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 8/154 (5%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           N +++I ++  +     ++E+  G GN+T  L       +  I+   +   + +    + 
Sbjct: 25  NYIEQIIKNENAQ-VKNILELACGTGNITIPLAKKNYD-IAGIDISDEMLNVARSKGEEQ 82

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
              L +++ D  ++DF    N+   +       Y      L N  S  T     E    +
Sbjct: 83  GIDLVLLEQDISELDF-DVTNLDCVLCACDGFNYITYDEDLMNVFS-KTHELLKEEGIFI 140

Query: 154 FQKEVGERITAQKNSPHYG----RLSVLTGWRTK 183
           F      +++       YG     +S +      
Sbjct: 141 FDISSFYKLSTVLGDNMYGENREDISYMWQNYFD 174


>gi|153007281|ref|YP_001381606.1| glycosyl transferase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030854|gb|ABS28622.1| glycosyl transferase family 2 [Anaeromyxobacter sp. Fw109-5]
          Length = 519

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +A+      G  V+EIG+G GNLT+ L+  G    +  + +  +   L+ +++  P
Sbjct: 285 MADVIRPYCGQKVLEIGSGTGNLTRRLIPRG--HYVASDVNPLYLQTLRSLTADRP 338


>gi|169612013|ref|XP_001799424.1| hypothetical protein SNOG_09121 [Phaeosphaeria nodorum SN15]
 gi|111062193|gb|EAT83313.1| hypothetical protein SNOG_09121 [Phaeosphaeria nodorum SN15]
          Length = 446

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPIL---KDIS 90
            ++        +G  V+++  G G LT +L     +   V+  D       I    K++ 
Sbjct: 30  TRRFFSYLDVREGQNVLDLACGTGLLTFLLADKVGKSGSVVGIDVTPGMLGIAGQKKELG 89

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNIS 116
                 + + Q D L +D  +     
Sbjct: 90  GDKYANVSLHQADVLHLDETEVLKGK 115


>gi|237841817|ref|XP_002370206.1| arginine methyltransferase protein, putative [Toxoplasma gondii
           ME49]
 gi|95007154|emb|CAJ20375.1| arginine N-methyltransferase, putative [Toxoplasma gondii RH]
 gi|211967870|gb|EEB03066.1| arginine methyltransferase protein, putative [Toxoplasma gondii
           ME49]
 gi|221482672|gb|EEE21010.1| protein arginine N-methyltransferase, putative [Toxoplasma gondii
           GT1]
 gi|221503134|gb|EEE28840.1| protein arginine N-methyltransferase, putative [Toxoplasma gondii
           VEG]
          Length = 660

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-- 94
           + I E+    +G TV+++GAG G L+      GA+KV  +E        +  +   +P  
Sbjct: 238 RAIVENRADFEGKTVMDVGAGSGILSFFAAQAGAKKVYAVEA-SNMAATIALLCKGNPSL 296

Query: 95  -NRLEIIQ 101
            +R++II 
Sbjct: 297 GSRIQIIN 304


>gi|60459130|gb|AAX19952.1| protein arginine methyltransferase [Toxoplasma gondii]
          Length = 441

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-- 94
           + I E+    +G TV+++GAG G L+      GA+KV  +E        +  +   +P  
Sbjct: 19  RAIVENRADFEGKTVMDVGAGSGILSFFAAQAGAKKVYAVEA-SNMAATIALLCKGNPSL 77

Query: 95  -NRLEIIQ 101
            +R++II 
Sbjct: 78  GSRIQIIN 85


>gi|27468215|ref|NP_764852.1| caffeoyl-CoA O-methyltransferase [Staphylococcus epidermidis ATCC
           12228]
 gi|57867097|ref|YP_188754.1| O-methyltransferase family protein [Staphylococcus epidermidis
           RP62A]
 gi|251811022|ref|ZP_04825495.1| caffeoyl-CoA O-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|293366428|ref|ZP_06613106.1| O-methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315761|gb|AAO04896.1|AE016748_130 caffeoyl-CoA O-methyltransferase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637755|gb|AAW54543.1| O-methyltransferase family protein [Staphylococcus epidermidis
           RP62A]
 gi|251805440|gb|EES58097.1| caffeoyl-CoA O-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|291319462|gb|EFE59830.1| O-methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329724724|gb|EGG61230.1| O-methyltransferase [Staphylococcus epidermidis VCU144]
 gi|329737425|gb|EGG73679.1| O-methyltransferase [Staphylococcus epidermidis VCU028]
          Length = 211

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPI 85
           Q  ++D   L  I +         ++EIG   G  +     +     V  IE+++    +
Sbjct: 30  QVPIVDKLTLDLIRQLIRMNRTKNILEIGTAIGYSSMQFANISKDINVTTIERNEDMIHL 89

Query: 86  LKDISS--QHPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            K      ++ N++ +I+ DAL       D +         +  +   + + T LL  
Sbjct: 90  AKKFIKKYRYQNQIRLIEYDALNAFEQVNDKQYDMIFIDAAKAQSMKFFQLYTPLLKK 147


>gi|220932282|ref|YP_002509190.1| protein-L-isoaspartate O-methyltransferase [Halothermothrix orenii
           H 168]
 gi|219993592|gb|ACL70195.1| protein-L-isoaspartate O-methyltransferase [Halothermothrix orenii
           H 168]
          Length = 223

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + ++        ++EIG G G    +L  + AR+V  +E+ +Q     +++ ++
Sbjct: 67  PYIVALMIQTLNPKKSHRILEIGTGSGYAAAVLSHI-ARQVYTVERIEQLANRARELFNK 125

Query: 93  HP-NRLEIIQDD 103
              + +E+  DD
Sbjct: 126 LDYSNIEVKVDD 137


>gi|134293400|ref|YP_001117136.1| methyltransferase type 11 [Burkholderia vietnamiensis G4]
 gi|134136557|gb|ABO57671.1| Methyltransferase type 11 [Burkholderia vietnamiensis G4]
          Length = 283

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQHPNRLEIIQDDA 104
           V+++G G G +T  +    A+       D   +     ++ + +     E +  DA
Sbjct: 53  VLDVGCGTGAVTLAIARRLAKDAQCTGVDISARMIAAARERAERDGVAAEFVHADA 108


>gi|291280272|ref|YP_003497107.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase
           [Deferribacter desulfuricans SSM1]
 gi|290754974|dbj|BAI81351.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase
           [Deferribacter desulfuricans SSM1]
          Length = 213

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISS 91
             ++ K+ E     +   ++EIG G G     + +   + V  +E   +     K ++  
Sbjct: 63  PYMVAKMTELLDLNEDDILLEIGTGSGY-QAAIASRLCKHVYTVEIIPELVDFAKSNLKK 121

Query: 92  QHPNRLEIIQDD 103
                + +I  D
Sbjct: 122 AGIKNVTVILGD 133


>gi|317132085|ref|YP_004091399.1| Methyltransferase type 11 [Ethanoligenens harbinense YUAN-3]
 gi|315470064|gb|ADU26668.1| Methyltransferase type 11 [Ethanoligenens harbinense YUAN-3]
          Length = 262

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            KI E     +   ++++G G G+LT +    L   KVI ++        L+  +     
Sbjct: 23  HKIIEELKIKESDWILDLGCGDGSLTKEFTRYLKTGKVIGLDASPGM---LEKANEFSSP 79

Query: 96  RLEIIQDDALKVDFEKFFNI 115
           +L+ I  D   + +E  F++
Sbjct: 80  KLQFILKDVDSLRYENQFDL 99


>gi|257092787|ref|YP_003166428.1| protein-L-isoaspartate O-methyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045311|gb|ACV34499.1| protein-L-isoaspartate O-methyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 224

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 6/147 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  +++      G  V+E+G G G     +L    ++V  +E  ++     +    +
Sbjct: 74  PYIVALMSDLIQPRAGDVVLEVGTGSGY-QAAILARLVKQVYSLEIIEELAAQARVRLQR 132

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
              + +E+   +  +  + +       I + A  P       L   + A           
Sbjct: 133 LGCDNVEVCAGNG-RFGWPEHA-PYDSIMVTAAAPRI--PPALIEQLKAGGILVMPVGSR 188

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLT 178
            L Q+ +  +  A         L V  
Sbjct: 189 YLGQELLVLQKDALGGLAERRVLPVAF 215


>gi|146340845|ref|YP_001205893.1| putative cyclopropane-fatty-acyl-phospholipid synthase (Cfa-like)
           [Bradyrhizobium sp. ORS278]
 gi|146193651|emb|CAL77668.1| putative cyclopropane-fatty-acyl-phospholipid synthase (Cfa-like)
           [Bradyrhizobium sp. ORS278]
          Length = 410

 Score = 38.6 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI---EKDQQFFPILKDISSQH 93
           K++AE+     G  ++EIG G G   + +      KV+ +   E+ + F    +   +  
Sbjct: 182 KRLAEAIDLKPGQKLLEIGCGWGGFAEYVAKTFNAKVVGLTISEQQRDFAQR-RIHEAGL 240

Query: 94  PNRLEIIQDD 103
             ++EI   D
Sbjct: 241 AEKVEIRLQD 250


>gi|332158115|ref|YP_004423394.1| protein-L-isoaspartate O-methyltransferase [Pyrococcus sp. NA2]
 gi|331033578|gb|AEC51390.1| protein-L-isoaspartate O-methyltransferase [Pyrococcus sp. NA2]
          Length = 217

 Score = 38.6 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +++  + E +    G+ V+E+G G G    L   L+    R V  IE+  +     K  
Sbjct: 64  PHMVAIMLEIAKLKPGMNVLEVGTGSGWNAALISYLVK---RDVYTIERIPELVEFAKRN 120

Query: 90  SSQHP-NRLEIIQDDALKVDFEKFFNISSPIRII 122
             +     + +I  D       K F   +P  +I
Sbjct: 121 LERAGVKNVHVILGD-----GSKGFPPKAPYDVI 149


>gi|238650666|ref|YP_002916519.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str.
           Rustic]
 gi|259495904|sp|C4K1M0|RSMH_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|238624764|gb|ACR47470.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str.
           Rustic]
          Length = 307

 Score = 38.6 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 29/69 (42%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L K+ E+     G + ++   G G  ++ +L      V  +++D       ++I   +  
Sbjct: 10  LNKMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQNYGE 69

Query: 96  RLEIIQDDA 104
           R + ++ + 
Sbjct: 70  RFDFVETNF 78


>gi|241997936|ref|XP_002433611.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215495370|gb|EEC05011.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 324

 Score = 38.6 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISS- 91
           NI +K+  +     G TV+++ AG G  T   L+   AR +   E ++     L      
Sbjct: 126 NITEKLRVAKLDCHGETVVDLYAGIGYFTLPYLVHAKARHIHSCEWNKDAAEALTKNLQL 185

Query: 92  -QHPNRLEIIQDDALKVDFEKFFN 114
               +R  I   D  KV  E   +
Sbjct: 186 NGVEDRCTIHFGDCRKVCPEGVAD 209


>gi|226493613|ref|NP_001150868.1| histone-arginine methyltransferase CARM1 [Zea mays]
 gi|195642472|gb|ACG40704.1| histone-arginine methyltransferase CARM1 [Zea mays]
          Length = 533

 Score = 38.6 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 24  YMGQNFLLDLNILKKIAE-----SS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           Y GQ  L   N+L+         ++        +G  V+++GAG G L+   +  GAR V
Sbjct: 153 YYGQ-LLHQQNMLQDFVRTGTYYAAVMENRSDFEGRVVVDVGAGSGILSLFAVQAGARHV 211

Query: 74  IVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
             +E   +     + + S +P   +R+ +I+ 
Sbjct: 212 YAVEA-SEMAEHAQRLISGNPSLGHRITVIKG 242


>gi|195012869|ref|XP_001983764.1| GH16076 [Drosophila grimshawi]
 gi|193897246|gb|EDV96112.1| GH16076 [Drosophila grimshawi]
          Length = 367

 Score = 38.6 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 25/112 (22%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLL-DLNILKKIAES------------SGSLDGITVIEIG 55
             ++     +I+  K +G N L+ D   L+ IAES              + +G  +  +G
Sbjct: 147 ETRSPFQKIQIMHSKTLG-NMLILDE--LQNIAESDLIYTETLMGRGIENYEGKEICILG 203

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
            G G L   LL    + V+++E D        ++  Q  N+ L  I  D L+
Sbjct: 204 GGDGALLYELLKENPKHVVMLEID--------ELVMQACNKYLNTICGDVLE 247


>gi|160880441|ref|YP_001559409.1| ribosomal protein L11 methyltransferase [Clostridium
           phytofermentans ISDg]
 gi|226710067|sp|A9KKT8|PRMA_CLOPH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|160429107|gb|ABX42670.1| ribosomal protein L11 methyltransferase [Clostridium
           phytofermentans ISDg]
          Length = 333

 Score = 38.6 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
             G T++++G G G LT +   LGA+  + I+ D+      K+
Sbjct: 172 QPGATLLDVGCGSGILTIIGRKLGAKTAVAIDIDENAVSASKE 214


>gi|118581364|ref|YP_902614.1| ribosomal protein L11 methyltransferase [Pelobacter propionicus DSM
           2379]
 gi|166223426|sp|A1AT86|PRMA_PELPD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|118504074|gb|ABL00557.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Pelobacter
           propionicus DSM 2379]
          Length = 309

 Score = 38.6 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 16/87 (18%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--- 91
           +L++I +    L    V+++G G G L    + LGA +V+ ++ D Q   + ++  +   
Sbjct: 158 LLEEIMDGMPILLTPAVLDLGTGSGILAMAAVRLGAGRVVAVDIDPQAVEVARENLALND 217

Query: 92  -------------QHPNRLEIIQDDAL 105
                          P   ++I  + L
Sbjct: 218 LTDQVECDTTPLEALPGTFDVILANIL 244


>gi|40063707|gb|AAR38488.1| methyltransferase, putative [uncultured marine bacterium 583]
          Length = 203

 Score = 38.6 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
           AG G L+   ++ GA++V VIEKD+  +  LK        ++  II +DA+
Sbjct: 67  AGSGALSLEAISRGAKEVYVIEKDKVVYEKLKYNFKLLDRDQYTIINEDAM 117


>gi|83746208|ref|ZP_00943262.1| Protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           UW551]
 gi|83727174|gb|EAP74298.1| Protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           UW551]
          Length = 246

 Score = 38.6 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ +         V+E+GAG G +  +L   G R V  ++   +     +D  ++
Sbjct: 93  PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RHVTTVDIAPELVAFARDNLAR 151

Query: 93  HPNRLEIIQDDA 104
           +     +   D 
Sbjct: 152 NG----VTNADV 159


>gi|254191805|ref|ZP_04898308.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157939476|gb|EDO95146.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 265

 Score = 38.6 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 83  DAIFGRRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 142

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V  +                    +    +    D W         L Q   
Sbjct: 143 IIQHDAVEVLAQMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 187

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A      Y   +       +
Sbjct: 188 VAQLAAHLKPGAYLHCATDWQNYAE 212


>gi|330792855|ref|XP_003284502.1| hypothetical protein DICPUDRAFT_75483 [Dictyostelium purpureum]
 gi|325085532|gb|EGC38937.1| hypothetical protein DICPUDRAFT_75483 [Dictyostelium purpureum]
          Length = 335

 Score = 38.6 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEI 99
            G L    V++IG+  G+L     L   A+++I IE ++ F  + KD  S++   +R+ +
Sbjct: 172 LGDLKDKVVLDIGSRLGSLLYTGYLFSDAKELIGIEINEYFSKLQKDFISKYKMGDRVSV 231

Query: 100 IQDDALK 106
           I  D LK
Sbjct: 232 IHGDILK 238


>gi|319949690|ref|ZP_08023723.1| tRNA (guanine-N(7)-)-methyltransferase [Dietzia cinnamea P4]
 gi|319436652|gb|EFV91739.1| tRNA (guanine-N(7)-)-methyltransferase [Dietzia cinnamea P4]
          Length = 258

 Score = 38.6 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 33  LNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKD 88
            N+  +I +  +        ++EIG+G G  T  +        VI +E        +L  
Sbjct: 64  RNVSDEIVDPEALFGRRAPLIVEIGSGTGTSTAAMAAAEPDIDVIAVEVYQPGLAQLLGM 123

Query: 89  ISSQHPNRLEIIQDDALKV 107
           I  +    + +I+ D + V
Sbjct: 124 ILREGLENVRMIRGDGVDV 142


>gi|260433956|ref|ZP_05787927.1| cyclopropane-fatty-acyl-phospholipid synthase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417784|gb|EEX11043.1| cyclopropane-fatty-acyl-phospholipid synthase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 402

 Score = 38.6 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
             + +  G   G  V+EIG G G   +        +V  +   Q+     +     +   
Sbjct: 175 ASMVDEMGVKPGDHVLEIGCGWGGFAEYAAKERGLRVTGLTISQEQLKYARQRIEKAGLS 234

Query: 95  NRLEIIQDD 103
           +R+E+   D
Sbjct: 235 DRVELKLQD 243


>gi|187924335|ref|YP_001895977.1| protein-L-isoaspartate O-methyltransferase [Burkholderia
           phytofirmans PsJN]
 gi|187715529|gb|ACD16753.1| protein-L-isoaspartate O-methyltransferase [Burkholderia
           phytofirmans PsJN]
          Length = 220

 Score = 38.6 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-P 94
           + ++ +++       V+EIG G G    +L  + AR V  +E+  Q      D       
Sbjct: 68  VARMLQAARLKPEDRVLEIGTGSGYAAAVLAEMVAR-VDTVERHPQLAESAMDRLRALGY 126

Query: 95  NRLEIIQDD 103
           + + +   D
Sbjct: 127 DNVNVHTAD 135


>gi|172037195|ref|YP_001803696.1| hypothetical protein cce_2280 [Cyanothece sp. ATCC 51142]
 gi|171698649|gb|ACB51630.1| hypothetical protein cce_2280 [Cyanothece sp. ATCC 51142]
          Length = 472

 Score = 38.6 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILK 87
           L D  I  K+ E         +IE   G GN  +    L   ++++I IE ++ +     
Sbjct: 20  LTDK-ICNKLIE-LNVCP-DIIIEPTCGVGNFLKSSSHLFKDSKEIIGIEINKNYVNQFD 76

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFF-NISSPIRIIANLPYNIGTRL 133
           +    + N + II  D  ++D  K   N +  I I+ N P+   + L
Sbjct: 77  NNFLGNTNTVRIINHDFFEIDLSKLITNKNDNILIMGNFPWVTNSEL 123


>gi|167739805|ref|ZP_02412579.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia pseudomallei
           14]
          Length = 234

 Score = 38.6 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 52  DAIFGRRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 111

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V  +                    +    +    D W         L Q   
Sbjct: 112 IIQHDAVEVLAQMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 156

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A      Y   +       +
Sbjct: 157 VAQLAAHLKPGAYLHCATDWQNYAE 181


>gi|115373047|ref|ZP_01460350.1| putative methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|115369959|gb|EAU68891.1| putative methyltransferase [Stigmatella aurantiaca DW4/3-1]
          Length = 244

 Score = 38.6 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQDDALKVDF 109
           +++G G G   + L  L  ++V+ ++  +      +   +  P    L  +Q +AL + +
Sbjct: 66  LDVGCGTGAAMRHLRPLCRQEVVGVDLSRGMLEEARRRQADAPGEATLTFVQGNALDLTY 125

Query: 110 EKFFN 114
           E  F+
Sbjct: 126 EAEFD 130


>gi|52142699|ref|YP_084130.1| N-methyl-transferase-related protein [Bacillus cereus E33L]
 gi|51976168|gb|AAU17718.1| N-methyl-transferase-related protein [Bacillus cereus E33L]
          Length = 247

 Score = 38.6 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  IKNENWLQEVAKEVQEQIGYPFQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  N + I   D  K++FE+ F++
Sbjct: 76  VMFAKEHSTNDIVIHCADFYKINFEEKFDV 105


>gi|89075070|ref|ZP_01161511.1| protein-L-isoaspartate O-methyltransferase [Photobacterium sp.
           SKA34]
 gi|89049157|gb|EAR54722.1| protein-L-isoaspartate O-methyltransferase [Photobacterium sp.
           SKA34]
          Length = 209

 Score = 38.6 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 7/126 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E  G     +V+E+G G G  T +L  L    V  +E+       L+  + +
Sbjct: 62  PYIVARMTELLGLTYQSSVLEVGTGSGYQTAVLAQL-VEHVYSVER----IKALQWQAKR 116

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              +LE+        D  + +    P   I  +     + +  + ++             
Sbjct: 117 RFKQLELHNISTKHGDGWQGWASKGPFDAI--IVTAAASEIPQSLLAQLVDGGRLILPVG 174

Query: 153 LFQKEV 158
             Q+E+
Sbjct: 175 CQQQEL 180


>gi|53725899|ref|YP_103733.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei ATCC
           23344]
 gi|67643995|ref|ZP_00442738.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei GB8
           horse 4]
 gi|121598596|ref|YP_992089.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei SAVP1]
 gi|124386210|ref|YP_001028534.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126449125|ref|YP_001081568.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei NCTC
           10247]
 gi|166998374|ref|ZP_02264234.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei PRL-20]
 gi|254175484|ref|ZP_04882144.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei ATCC
           10399]
 gi|254202434|ref|ZP_04908797.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei FMH]
 gi|254207766|ref|ZP_04914116.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei JHU]
 gi|254356333|ref|ZP_04972609.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei
           2002721280]
 gi|59798632|sp|Q62HT7|TRMB_BURMA RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|52429322|gb|AAU49915.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121227406|gb|ABM49924.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei SAVP1]
 gi|124294230|gb|ABN03499.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126241995|gb|ABO05088.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei NCTC
           10247]
 gi|147746681|gb|EDK53758.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei FMH]
 gi|147751660|gb|EDK58727.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei JHU]
 gi|148025330|gb|EDK83484.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei
           2002721280]
 gi|160696528|gb|EDP86498.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei ATCC
           10399]
 gi|238525474|gb|EEP88902.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei GB8
           horse 4]
 gi|243065437|gb|EES47623.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia mallei PRL-20]
          Length = 264

 Score = 38.6 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 82  DAIFGRRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 141

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V  +                    +    +    D W         L Q   
Sbjct: 142 IIQHDAVEVLAQMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 186

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A      Y   +       +
Sbjct: 187 VAQLAAHLKPGAYLHCATDWQNYAE 211


>gi|332654338|ref|ZP_08420082.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
 gi|332517424|gb|EGJ47029.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
          Length = 359

 Score = 38.6 bits (89), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L    A  V+  +  ++   + K    ++ + +
Sbjct: 166 KVTELLNPDPTDYILDIACGNGNYSAYLAE-KAVSVLAFDYSEKMVELAKKRQKRYADHI 224

Query: 98  EIIQDDALKVDFEKFFNISSPI 119
           E    DA           + P 
Sbjct: 225 EFCVADATNETSLMALKRNKPF 246


>gi|326427716|gb|EGD73286.1| hypothetical protein, variant [Salpingoeca sp. ATCC 50818]
          Length = 319

 Score = 38.6 bits (89), Expect = 0.97,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            +   + G  V++IG G G L+ +    GARKVI +E    F+   + + + +     I 
Sbjct: 18  AADAVIKGGVVMDIGCGSGLLSLLSARTGARKVIAVEA-SDFYEAAEKVIAANGYSECI- 75

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
             D L    E   ++     I++     +GT L+F ++
Sbjct: 76  --DVLHSRVEDVEDVEQVDCIVSEW---MGTMLIFEFM 108


>gi|325929549|ref|ZP_08190663.1| methyltransferase, cyclopropane fatty acid synthase [Xanthomonas
           perforans 91-118]
 gi|325540059|gb|EGD11687.1| methyltransferase, cyclopropane fatty acid synthase [Xanthomonas
           perforans 91-118]
          Length = 356

 Score = 38.6 bits (89), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +        I    + +     IL+    +  + +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERYPNASITAVSNSRPQRAHILEQCRVRGLSNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             D  AL +    F  + S         Y      + +W++
Sbjct: 186 TADVNALTLPPGDFDRVVSVEMFEHMRNYRDLLARVGSWLA 226


>gi|312137814|ref|YP_004005150.1| sam dependent methyltransferase [Rhodococcus equi 103S]
 gi|311887153|emb|CBH46462.1| putative SAM dependent methyltransferase [Rhodococcus equi 103S]
          Length = 254

 Score = 38.6 bits (89), Expect = 0.97,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNR 96
           +            ++++G G G +T++L       + + ++   +        +    + 
Sbjct: 22  RAVAGLDLEPDDRLLDVGCGDGYVTRLLAERLPEGRAVGVDASPRMIA----KADTASSN 77

Query: 97  LEIIQDDALKVDFEKFFNI 115
           ++ +  DA  + F   F++
Sbjct: 78  VQFVLADARDLPFRAEFDV 96


>gi|301106358|ref|XP_002902262.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262098882|gb|EEY56934.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 209

 Score = 38.6 bits (89), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            E         V+EIG G       +     +   +IE D++     +  +  H   +EI
Sbjct: 39  VEGLAIQPTDRVLEIGFGLAYSATHIQRFRPKSHTIIECDEETLQRARQFAISHSG-VEI 97

Query: 100 IQD 102
           +  
Sbjct: 98  VAG 100


>gi|238926200|ref|ZP_04657960.1| possible precorrin-6B methyltransferase [Selenomonas flueggei ATCC
           43531]
 gi|238885880|gb|EEQ49518.1| possible precorrin-6B methyltransferase [Selenomonas flueggei ATCC
           43531]
          Length = 191

 Score = 38.6 bits (89), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEII 100
           +       V ++GAG G+L+     L  +  V  IEK+ +   ++K+ +++     L ++
Sbjct: 30  AQIAPDAVVYDVGAGTGSLSVEAARLAPQGHVYAIEKNPEGIALIKENAARFSTQNLTVV 89

Query: 101 QDDA 104
           +  A
Sbjct: 90  EGAA 93


>gi|228470842|ref|ZP_04055689.1| methyltransferase small [Porphyromonas uenonis 60-3]
 gi|228307409|gb|EEK16419.1| methyltransferase small [Porphyromonas uenonis 60-3]
          Length = 238

 Score = 38.6 bits (89), Expect = 0.97,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 51  VIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
           V+++G G G L+ ML     +  V  I+ D +     +D  S+ P  NRL  +  D    
Sbjct: 35  VLDVGTGTGILSLMLAQTYPSAMVTAIDIDDEAVRTAQDNFSRSPYSNRLTALSCDI--T 92

Query: 108 DFEKFFNISSPIRIIANLPYN 128
             E    +     I++N PY 
Sbjct: 93  APELALPLRHYDLIVSNPPYY 113


>gi|163759168|ref|ZP_02166254.1| Cyclopropane-fatty-acyl-phospholipid synthase [Hoeflea
           phototrophica DFL-43]
 gi|162283572|gb|EDQ33857.1| Cyclopropane-fatty-acyl-phospholipid synthase [Hoeflea
           phototrophica DFL-43]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.97,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 32  DLNILKK--IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           D   LKK  IA      DG  V++IG G G +   L  +   +V+ +   ++   + +  
Sbjct: 156 DAQTLKKRHIAAKLCLKDGQRVLDIGCGWGGMALYLAHVADVEVVGVTLSERQLAVARRR 215

Query: 90  SS 91
           + 
Sbjct: 216 AE 217


>gi|288932612|ref|YP_003436672.1| ribosomal RNA adenine methylase transferase [Ferroglobus placidus
           DSM 10642]
 gi|288894860|gb|ADC66397.1| ribosomal RNA adenine methylase transferase [Ferroglobus placidus
           DSM 10642]
          Length = 165

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                   ++GAG G +T+       RKV  +E D+     L+     +  ++E++  +
Sbjct: 18  PKSDEVFADVGAGSGAVTEFFSPY-VRKVYAVEIDEAACEGLRKRFKGN-EKVEVLNMN 74


>gi|260577235|ref|ZP_05845210.1| protein-L-isoaspartate O-methyltransferase [Rhodobacter sp. SW2]
 gi|259020544|gb|EEW23865.1| protein-L-isoaspartate O-methyltransferase [Rhodobacter sp. SW2]
          Length = 220

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + ++        V+E+G G G     +L+L AR+V  +++ ++     +D+   
Sbjct: 70  PSVVGLMTQALEVQPRDMVLEVGTGSGY-QAAILSLLARRVYTVDRHRRLVREAQDVF-- 126

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI 119
             + L ++   AL VD        +P 
Sbjct: 127 --HVLGLVNITALHVDGSFGLPDQAPF 151


>gi|254797269|ref|YP_003082111.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [Neorickettsia risticii str. Illinois]
 gi|254590510|gb|ACT69872.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [Neorickettsia risticii str. Illinois]
          Length = 230

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKD-ISSQHP 94
           +   +S G L    V+++ AG G++T  LL    + ++++ +K+ +   I KD +  +  
Sbjct: 34  RNFVKSIGLLPNQRVLDMAAGTGDITLRLLKTHISVEIVLCDKNHEMLEIAKDRLLDEGY 93

Query: 95  NRLEIIQDDALKVDFEK 111
             LE++  DA ++ FE 
Sbjct: 94  VNLEVVSADAAQLPFED 110


>gi|241612373|ref|XP_002406377.1| acid methyltransferase, putative [Ixodes scapularis]
 gi|215500813|gb|EEC10307.1| acid methyltransferase, putative [Ixodes scapularis]
          Length = 297

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL---TLGARKVIVIEKDQQFFPILKDISSQ---HPN 95
           +SG  D    +++G GPGN+T+ +L    L  R+++ ++  +      ++  S      +
Sbjct: 49  ASGPADDQQFLDLGCGPGNITRDVLLPQCLPCRRLVAVDSSEDMLKYARERFSHPKIFYD 108

Query: 96  RLEIIQDD 103
            L+I+  D
Sbjct: 109 TLDIMSGD 116


>gi|198475681|ref|XP_001357113.2| GA17605 [Drosophila pseudoobscura pseudoobscura]
 gi|198137911|gb|EAL34179.2| GA17605 [Drosophila pseudoobscura pseudoobscura]
          Length = 366

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           I  ++ +    TV+++G G G L+      GA +VI +E
Sbjct: 64  IRCNAAAFKDKTVLDVGCGLGTLSLFAAESGAHRVIAVE 102


>gi|195160138|ref|XP_002020933.1| GL16439 [Drosophila persimilis]
 gi|194117883|gb|EDW39926.1| GL16439 [Drosophila persimilis]
          Length = 366

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           I  ++ +    TV+++G G G L+      GA +VI +E
Sbjct: 64  IRCNAAAFKDKTVLDVGCGLGTLSLFAAESGAHRVIAVE 102


>gi|194289674|ref|YP_002005581.1| methyltransferase, ubie/coq5 family [Cupriavidus taiwanensis LMG
           19424]
 gi|193223509|emb|CAQ69514.1| putative methyltransferase, ubiE/COQ5 family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 273

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           ++IA     L    V+E+ AG G LT+ L        +V+  D    P+L    +    R
Sbjct: 36  RRIAA----LRPSRVLELAAGTGALTRELAARMPADTLVVATDLN-APMLARAQAAGTAR 90

Query: 97  -LEIIQDDALKVDFEK 111
            ++  + DA+++ F+ 
Sbjct: 91  PVQWREADAMRLPFDD 106


>gi|144897763|emb|CAM74627.1| Bacterial methyltransferase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 328

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ ++    DG  +++   G G  +  LL     +V  I++D       + +   
Sbjct: 17  PVLLAEVVQALAPQDGDVMVDGTFGAGGYSLALLDCARIRVFGIDRDPSAIAAGQRLPQA 76

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
              RL +I+    +          + I  +  +  +IG
Sbjct: 77  ADGRLSVIEG---RYGDMDLLLPQAGIARVDGIALDIG 111


>gi|254298925|ref|ZP_04966375.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           406e]
 gi|157808849|gb|EDO86019.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           406e]
          Length = 264

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 82  DAIFGRRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 141

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V  +                    +    +    D W         L Q   
Sbjct: 142 IIQHDAVEVLAQMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 186

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A      Y   +       +
Sbjct: 187 VAQLAAHLKPGAYLHCATDWQNYAE 211


>gi|53720252|ref|YP_109238.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|76810370|ref|YP_334491.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           1710b]
 gi|167817028|ref|ZP_02448708.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia pseudomallei
           91]
 gi|167912157|ref|ZP_02499248.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia pseudomallei
           112]
 gi|217420592|ref|ZP_03452097.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           576]
 gi|254260569|ref|ZP_04951623.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           1710a]
 gi|59798643|sp|Q63RN0|TRMB_BURPS RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|91208030|sp|Q3JPL2|TRMB_BURP1 RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|52210666|emb|CAH36650.1| putative methyltransferase [Burkholderia pseudomallei K96243]
 gi|76579823|gb|ABA49298.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           1710b]
 gi|217396004|gb|EEC36021.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           576]
 gi|254219258|gb|EET08642.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           1710a]
          Length = 265

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 83  DAIFGRRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 142

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V  +                    +    +    D W         L Q   
Sbjct: 143 IIQHDAVEVLAQMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 187

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A      Y   +       +
Sbjct: 188 VAQLAAHLKPGAYLHCATDWQNYAE 212


>gi|325967647|ref|YP_004243839.1| methyltransferase [Vulcanisaeta moutnovskia 768-28]
 gi|323706850|gb|ADY00337.1| methyltransferase [Vulcanisaeta moutnovskia 768-28]
          Length = 214

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 5/130 (3%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
              V+++G G G        +G R+VI I+ D +   I ++ +S++     +   D +  
Sbjct: 57  NARVLDLGCGTGRFAIAAALMGVRQVICIDIDPEALAIARESASKYG----LSNVDFITN 112

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
           D      +     +  N P+ I +    +     T       +  + +    + I+ + N
Sbjct: 113 DIRNMAIMGRFDVVFQNPPFGIQSERGLDMKFLATAINHSGIVYTIHKLSTLDYISDKVN 172

Query: 168 SPHYGRLSVL 177
           S     +SVL
Sbjct: 173 SLG-CVMSVL 181


>gi|291239597|ref|XP_002739709.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
          Length = 284

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +         V+++G+G G   + L  +    V  IE   Q     KD++ +      +
Sbjct: 63  IQLLNINADHKVLDVGSGLGGPARYLANITKCHVTAIEIQHQLDVTAKDLTKRCQLDHYV 122

Query: 100 IQ--DDALKVDF 109
                D L  DF
Sbjct: 123 HHECGDILTADF 134


>gi|325980871|ref|YP_004293274.1| methyltransferase type 11 [Nitrosomonas sp. AL212]
 gi|325533376|gb|ADZ28095.1| Methyltransferase type 11 [Nitrosomonas sp. AL212]
          Length = 219

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
              +    G  V+++G G G LT M+  T     V  ++ D Q   I +  + Q    + 
Sbjct: 38  VAQARIQPGQDVLDVGCGTGTLTLMIKQTQLDATVYGLDMDLQILDIARRKAEQAGETIV 97

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           + Q  A       + N S    I + + +++ 
Sbjct: 98  LQQGTA---TCLPYLNESFDHVIASLMLHHLT 126


>gi|297588518|ref|ZP_06947161.1| hemolysin [Finegoldia magna ATCC 53516]
 gi|297573891|gb|EFH92612.1| hemolysin [Finegoldia magna ATCC 53516]
          Length = 265

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQ 101
                   ++IG+  G  TQ+LL   A++V  I+  D Q    L+     H +R+++ +
Sbjct: 84  NIGKHDLCLDIGSSTGGFTQVLLKNNAKEVYAIDVGDNQMVDELR-----HDSRVKLFE 137


>gi|313125635|ref|YP_004035905.1| type i restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
 gi|312292000|gb|ADQ66460.1| type I restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
          Length = 719

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 22/148 (14%)

Query: 1   MTMNNKSHSLKTILSHYKIIP---KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
           +  +N + ++  +     I P   ++ +GQ F     I   +A         TV++ G G
Sbjct: 131 LNSDNPAETIGKLFEQ--ITPQESRRKLGQ-FRTPPEIADIMATWCVQESTDTVLDPGVG 187

Query: 58  PGNLTQMLLTLG------ARKVIVIEKDQQFFPI------LKDISSQHPNRLEIIQDDAL 105
            G L+             A    +   D     +      L+ +    P+ L+    D L
Sbjct: 188 AGALSAPAYKRKLKLSSDASLATMHGIDLNELALVMGATTLRLLDHGGPHNLQ--TGDFL 245

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRL 133
           ++  E     +    +I+N PY+    L
Sbjct: 246 ELSPEDI--DAEVDAVISNPPYSRHHEL 271


>gi|156377274|ref|XP_001630781.1| predicted protein [Nematostella vectensis]
 gi|156217809|gb|EDO38718.1| predicted protein [Nematostella vectensis]
          Length = 833

 Score = 38.6 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 28  NF--LLDL--NIL-KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           +F  L D   N+  KK   ++ S     V++IG+G G L+   +  GA+KV   E  +  
Sbjct: 137 HFRMLNDRQRNLAYKKAISNAVSNGCDIVLDIGSGSGILSMFAVQAGAKKVYACEMSKTM 196

Query: 83  FPILKD--ISSQHPNRLEIIQ 101
           + + KD  + +Q  + +E+I 
Sbjct: 197 YELSKDVLLGNQMESFIEVIH 217


>gi|315506068|ref|YP_004084955.1| methyltransferase type 11 [Micromonospora sp. L5]
 gi|315412687|gb|ADU10804.1| Methyltransferase type 11 [Micromonospora sp. L5]
          Length = 264

 Score = 38.6 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            +L  +A +       TV+++G G G L+  L       VI ++ +     I +  +
Sbjct: 22 PEVLDALAAAFQLGADDTVVDLGCGTGQLSLPLADR-VGTVIGMDPEPDMLAIARRTA 78


>gi|257053777|ref|YP_003131610.1| Methyltransferase type 11 [Halorhabdus utahensis DSM 12940]
 gi|256692540|gb|ACV12877.1| Methyltransferase type 11 [Halorhabdus utahensis DSM 12940]
          Length = 221

 Score = 38.6 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQH 93
           +++ +      G  V+E+G G G    +L         VI  D          + +    
Sbjct: 32  RRVVDGLDLETGDLVVEMGCGTGANLPLLRERVGPSGTVIGVDLTRGMLRKAHRRVERGG 91

Query: 94  PNRLEIIQDDA 104
            + + ++  DA
Sbjct: 92  WSNVHLVAGDA 102


>gi|223044364|ref|ZP_03614398.1| ribosomal protein L11 methyltransferase [Staphylococcus capitis
           SK14]
 gi|222442233|gb|EEE48344.1| ribosomal protein L11 methyltransferase [Staphylococcus capitis
           SK14]
          Length = 312

 Score = 38.6 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                ++I++G G G L+     +G +++  ++ D+    + K+   ++   + +E +  
Sbjct: 171 VQPTDSIIDVGTGSGILSIASHLVGVKRIKALDIDEMAVNVAKENFKKNRCEDAIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EK+
Sbjct: 231 NLLKEEKEKY 240


>gi|163736266|ref|ZP_02143685.1| Cyclopropane-fatty-acyl-phospholipid synthase [Phaeobacter
           gallaeciensis BS107]
 gi|161390136|gb|EDQ14486.1| Cyclopropane-fatty-acyl-phospholipid synthase [Phaeobacter
           gallaeciensis BS107]
          Length = 401

 Score = 38.6 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 53/178 (29%), Gaps = 29/178 (16%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
             + +  G   G  V+E+G G G   +        +V  +   ++     ++    +   
Sbjct: 175 ASMVDQMGVKPGDHVLEVGCGWGGFAEYAARERGLRVTGLTISEEQLKYARERIEKAGLS 234

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW----ESL 150
           +++++   D                R        I +  +F  +    WP ++    + L
Sbjct: 235 DQVKLRMQD---------------YRDCEGTFDGIASIEMFEAVGEKYWPAYFNMVRDRL 279

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
               Q  +     A +    Y R             +F   P    P+PK+    +  
Sbjct: 280 RPGGQATLQIITVADRRWTVYKRGVDFIQ-----KHIF---PGGMLPAPKILRQQVEL 329


>gi|308190252|ref|YP_003923183.1| O-methyltransferase [Mycoplasma fermentans JER]
 gi|319777620|ref|YP_004137271.1| DNA methylase [Mycoplasma fermentans M64]
 gi|307624994|gb|ADN69299.1| predicted O-methyltransferase [Mycoplasma fermentans JER]
 gi|318038695|gb|ADV34894.1| DNA methylase [Mycoplasma fermentans M64]
          Length = 261

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALK 106
            ++EIGA  G L+  +       K+  +E   +   + +D    +   N+++II  D  +
Sbjct: 48  NLLEIGANNGALSIFIAERNPNLKIDAVEIQTKACKLAQDNIELNNKQNQIKIINQDFNE 107

Query: 107 VDFEKFFNISSPI-RIIANLPYN 128
              EK  N +S    I+ N P+ 
Sbjct: 108 FYLEKIKNAASKYDSIVCNPPFY 130


>gi|238018210|ref|ZP_04598636.1| hypothetical protein VEIDISOL_00034 [Veillonella dispar ATCC 17748]
 gi|237864681|gb|EEP65971.1| hypothetical protein VEIDISOL_00034 [Veillonella dispar ATCC 17748]
          Length = 199

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 7/131 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L+++A S       T+I+ G+G G ++  +        I IE D++ +     I+ + P
Sbjct: 37  VLERLANSGHIRKKNTLIDYGSGKGRVSIFMAYQTGCHSIGIEYDERLYER-ALINGESP 95

Query: 95  ---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
              NR+  +  DA      +  + +           +   R+L N   +    P    L 
Sbjct: 96  AARNRVSFVHGDAALY---ELPDQADRCFFFNPFALHTIKRVLGNIFDSLYHHPREIKLF 152

Query: 152 LLFQKEVGERI 162
             +  E  E  
Sbjct: 153 FYYVNEEVENF 163


>gi|225432318|ref|XP_002273923.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297736879|emb|CBI26080.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 27  QNFLLD-LNILKKIAESSGSLDGIT---VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           QN L D +      A    +    T   V+++GAG G L+      GA+ V  +E   + 
Sbjct: 160 QNMLQDYVRTGTYFAAVIENRTDFTGRVVVDVGAGSGILSLFAAQAGAKHVYAVEA-SEM 218

Query: 83  FPILKDISSQHPN---RLEIIQD 102
               + + + +P+   R+ +++ 
Sbjct: 219 AEYARKLIAGNPSLGKRITVVKG 241


>gi|291190311|ref|NP_001167356.1| CL026 protein [Salmo salar]
 gi|223649400|gb|ACN11458.1| C12orf26 homolog [Salmo salar]
          Length = 611

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 5   NKSHS--LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
           NKS S  L  I   + + PKK   Q+ +  L  L K  +     +  +V+++G+G G+LT
Sbjct: 119 NKSQSSLLGHIFRKH-VKPKK---QHEIRSLGTLVK--QLCDLTNCNSVVDVGSGQGHLT 172

Query: 63  QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           + L       V  IE D     +    +S++  +L
Sbjct: 173 RFLSFGLGLSVTGIEADPTLVSM----ASKYDGQL 203


>gi|113931362|ref|NP_001039128.1| ribosomal RNA adenine dimethylase domain containing 1 [Xenopus
           (Silurana) tropicalis]
 gi|89268771|emb|CAJ81470.1| novel protein [Xenopus (Silurana) tropicalis]
          Length = 596

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 16/159 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +   + + PKK   Q+   ++  L K+    S       V++IG+G G+L++ L      
Sbjct: 129 LFRKH-VKPKK---QH---EIRQLGKLVRILSEVTGCEQVVDIGSGQGHLSRFLSFGQGL 181

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            V  +E D+    +           LE       K       + + P  ++A +      
Sbjct: 182 SVTAVEADKHLVTMAAKFDHDLMYMLE------KKSHIITDLSPNPPRHVMAWVDPKASW 235

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVG--ERITAQKNS 168
             L   +   +     +       + +G      A   S
Sbjct: 236 EDLAKQLGECSCVVNRKCGGHFKAQRIGGTVNGHADPGS 274


>gi|332667668|ref|YP_004450456.1| tRNA (adenine-N(6)-)-methyltransferase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336482|gb|AEE53583.1| tRNA (adenine-N(6)-)-methyltransferase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 264

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKD--ISSQHPNRLEI 99
           + +     +++IGAG G +  ML    A  +I  +E D   F   ++   ++   NRLE+
Sbjct: 59  ADTSQAKRILDIGAGTGIIAIMLGQRNAEAIIHAVEVDDLAFEQAQENMRNAPWANRLEV 118

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           I          +         I++N P+  G    FN
Sbjct: 119 IHHSIQDFAETQ---PQQYDLIVSNPPFFSGGTFSFN 152


>gi|253681076|ref|ZP_04861879.1| precorrin-6Y C5,15-methyltransferase [Clostridium botulinum D str.
           1873]
 gi|253562925|gb|EES92371.1| precorrin-6Y C5,15-methyltransferase [Clostridium botulinum D str.
           1873]
          Length = 188

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 38  KI--AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94
           +I         +   +++IGAG G+++  L  +    +VI IEK+++   ++     +  
Sbjct: 22  RILSISKMNINESSRILDIGAGTGSISIQLAKISRNGEVIAIEKNEKAIDLINKNKEKFQ 81

Query: 95  -NRLEIIQDDALKV 107
            N L++++ +AL+V
Sbjct: 82  VNNLKVVKGEALEV 95


>gi|238809990|dbj|BAH69780.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 263

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALK 106
            ++EIGA  G L+  +       K+  +E   +   + +D    +   N+++II  D  +
Sbjct: 50  NLLEIGANNGALSIFIAERNPNLKIDAVEIQTKACKLAQDNIELNNKQNQIKIINQDFNE 109

Query: 107 VDFEKFFNISSPI-RIIANLPYN 128
              EK  N +S    I+ N P+ 
Sbjct: 110 FYLEKIKNAASKYDSIVCNPPFY 132


>gi|297587203|ref|ZP_06945848.1| O-methyltransferase [Finegoldia magna ATCC 53516]
 gi|297575184|gb|EFH93903.1| O-methyltransferase [Finegoldia magna ATCC 53516]
          Length = 237

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 35  ILKKIA--ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +  I   + +       +I+IG G G L    +TL    K I IE  +    +L++  +
Sbjct: 24  TIDSILLTDFAKMKKDTNLIDIGCGTGILLLRCMTLYNLSKCIGIEIQKDVADMLEETIA 83

Query: 92  -QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
             + + +E+I DD   VD        S   II N PY 
Sbjct: 84  INNLSNVEVINDDFKNVD----IKNDSIDNIIVNPPYQ 117


>gi|226941784|ref|YP_002796858.1| Methyltransferase small [Laribacter hongkongensis HLHK9]
 gi|226716711|gb|ACO75849.1| Methyltransferase small [Laribacter hongkongensis HLHK9]
          Length = 394

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A +          +IG G G L  +L   G  +VI  ++D +       ++    N + +
Sbjct: 204 ANAPLPPQAELAFDIGTGSGVLAAVLARRGVARVIATDQDPRA------LACAADNLVRL 257

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
              + ++V     F       ++ N P+
Sbjct: 258 GLAEQVEVRQADLFPAGRAGLVVCNPPW 285


>gi|210621882|ref|ZP_03292879.1| hypothetical protein CLOHIR_00824 [Clostridium hiranonis DSM 13275]
 gi|210154513|gb|EEA85519.1| hypothetical protein CLOHIR_00824 [Clostridium hiranonis DSM 13275]
          Length = 248

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 8/121 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +++I +S G  +   ++E+  G GNLT  L   G   +  I+   +   +  + + +   
Sbjct: 27  IEEIIKSEG-AEVQNILELACGTGNLTIPLTKKGYD-IAGIDISAEMLEVAMEKAEEEGV 84

Query: 96  RLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           +L ++Q D   L  D          I    +    +       ++ +       E    +
Sbjct: 85  QLVLLQQDIAELDFDVPNL----DCILCACDGFNYLTYDDDLEYVFSKAHELLKEDGIFI 140

Query: 154 F 154
           F
Sbjct: 141 F 141


>gi|207728149|ref|YP_002256543.1| protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum
           MolK2]
 gi|206591394|emb|CAQ57006.1| protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum
           MolK2]
          Length = 233

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ +         V+E+GAG G +  +L   G R V  ++   +     +D  ++
Sbjct: 80  PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RHVTTVDIAPELVAFARDNLAR 138

Query: 93  HPNRLEIIQDDA 104
           +     +   D 
Sbjct: 139 NG----VTNADV 146


>gi|167583040|ref|ZP_02375914.1| Cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           thailandensis TXDOH]
          Length = 391

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 30  LLDLNILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           L D    K  +I +S G   G+ V+EIG G G         G   V  +   Q  + + +
Sbjct: 156 LADAQTAKYQRIVDSLGLRAGMRVLEIGCGWGGFAVHAARQGIH-VHGVTISQAQYALAR 214

Query: 88  DISSQ--HPNRLEIIQDDALKVD 108
           +  ++    +R+ +   D   VD
Sbjct: 215 ERIARDGLSDRVTLELRDYRDVD 237


>gi|162447375|ref|YP_001620507.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985482|gb|ABX81131.1| RNA methyltransferase, TrmA family [Acholeplasma laidlawii PG-8A]
          Length = 460

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHP 94
            K+ E +       VI+  AG   ++  +     +KV  IE DQ+     IL  +   + 
Sbjct: 300 NKMRELANLQPTDVVIDAYAGSAPISHYIAK-DVKKVYAIEIDQRSVQSAILS-LKRNNI 357

Query: 95  NRLEIIQDDALK 106
             + +IQ D  K
Sbjct: 358 KNVTVIQSDFKK 369


>gi|218531357|ref|YP_002422173.1| methyltransferase small [Methylobacterium chloromethanicum CM4]
 gi|218523660|gb|ACK84245.1| methyltransferase small [Methylobacterium chloromethanicum CM4]
          Length = 250

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQH--PNR 96
           A       G T+ ++GA  G +   +  L    +V+++E+D     + ++ ++ +    R
Sbjct: 33  ARLLAPAPGATLYDLGAATGAVGLAVARLCEVGRVVLVERDPDLVALARENAAANGLDAR 92

Query: 97  LEIIQDDAL 105
           + +I+ D L
Sbjct: 93  VAVIEADIL 101


>gi|90413380|ref|ZP_01221373.1| ribosomal protein L11 methyltransferase [Photobacterium profundum
           3TCK]
 gi|90325622|gb|EAS42091.1| ribosomal protein L11 methyltransferase [Photobacterium profundum
           3TCK]
          Length = 294

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 15/140 (10%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L G T+I+ G G G L    L LGA+KVI I+ D Q     +D + ++   ++LE+   
Sbjct: 157 DLTGQTIIDFGCGSGILAIAALKLGAKKVIGIDIDPQAIQASRDNAERNGVSDKLEL--- 213

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
             L  D          +  I   P    + ++ + +          S  L  Q E     
Sbjct: 214 -FLPKDQPTDVQADVVVANILAGPLRELSPVIKSLV--KPGGKLAISGVLEIQAEDVSTY 270

Query: 163 TAQ-------KNSPHYGRLS 175
            +             + R+S
Sbjct: 271 YSDELALDPVVARDEWCRIS 290


>gi|332216070|ref|XP_003257165.1| PREDICTED: hemK methyltransferase family member 1 isoform 1
           [Nomascus leucogenys]
 gi|332216072|ref|XP_003257166.1| PREDICTED: hemK methyltransferase family member 1 isoform 2
           [Nomascus leucogenys]
 gi|332216074|ref|XP_003257167.1| PREDICTED: hemK methyltransferase family member 1 isoform 3
           [Nomascus leucogenys]
          Length = 338

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS--QHPNRLE 98
           + GS     ++E+G G G ++  LL  L   +VI ++K +    +  + +   +  +R+ 
Sbjct: 154 AVGSPGSPLILEVGCGSGAISLSLLSQLPQSRVIAVDKGEAAISLTHENAQRLRLQDRIW 213

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           II  D        +        +++N PY
Sbjct: 214 IIHLDMTSERSWTYLPWGPVDLVVSNPPY 242


>gi|306818558|ref|ZP_07452281.1| RsmD family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|304648731|gb|EFM46033.1| RsmD family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 187

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 31  LDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
               + + I    +S G + G  V++I AG G L    L+ GA   I+++  +    +L+
Sbjct: 24  TSERVREAIFSRLDSQGVIAGARVLDIFAGSGALGLEALSRGATDAILVDSARGAVQVLR 83

Query: 88  DISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             ++      R++++  DA++       N    +  I   PY +   +L   +S+
Sbjct: 84  ANAAALSAGERVQVVGADAVRFAASLGANERFDLVFID-PPYALDFGILDQVLSS 137


>gi|227499755|ref|ZP_03929855.1| polypeptide chain release factor methyltransferase HemK
           [Anaerococcus tetradius ATCC 35098]
 gi|227218141|gb|EEI83407.1| polypeptide chain release factor methyltransferase HemK
           [Anaerococcus tetradius ATCC 35098]
          Length = 272

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 17/131 (12%)

Query: 25  MGQNFLLDLNIL------KKIAESS--GSLDGITVIEIGAGPGNLTQMLLT-LGARKVIV 75
            G NF +D   L      + I +           +++IG G G +   L   L A  ++ 
Sbjct: 76  FGLNFKVDERALIPRFETEIIVDYLIKAPFKKDKILDIGTGSGAIALSLAKNLKASDILA 135

Query: 76  IEK-DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            +  D+        ++ ++  RL+I     +K D   F  IS    II + P  I ++  
Sbjct: 136 SDIEDRAL-----SLAEENKKRLKISNVSFIKSDL--FEEISGKFDIIISNPPYINSKDF 188

Query: 135 FNWISADTWPP 145
                   + P
Sbjct: 189 EKLDKTLYYEP 199


>gi|165932647|ref|YP_001649436.1| 16S rRNA methyltransferase GidB [Rickettsia rickettsii str. Iowa]
 gi|189040816|sp|B0BW04|RSMG_RICRO RecName: Full=Ribosomal RNA small subunit methyltransferase G;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase; Short=16S rRNA m7G methyltransferase
 gi|165907734|gb|ABY72030.1| methyltransferase [Rickettsia rickettsii str. Iowa]
          Length = 192

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 11  KTILSHYKIIPK--KYMGQ--NFLLDLNIL-----KKIAESSGS-----LDGITVIEIGA 56
           + I+   +I  K  K   +  N L+  N +     + I +S           I +++IG+
Sbjct: 6   REIIEKLEIFQKLVKKWNKSIN-LVSDNTIHNFWQRHILDSLQLIQYIDNKEIHLVDIGS 64

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           G G    +L   G  +V +IE D +    L+  S    N ++II     KV+ +      
Sbjct: 65  GAGLPGIVLSIAGVAQVSLIEADLRKCIFLEKASKISNNNVQIINQRIEKVEIDCSILTC 124

Query: 117 SPIRIIANLPY---NIGTRLLFNWISADTWPPFW 147
                +  +     NI  R  F  +    +    
Sbjct: 125 RAFSNLNTIFNCIKNISVREKFLLLKGKNYLTEI 158


>gi|118431301|ref|NP_147666.2| protein-L-isoaspartate O-methyltransferase [Aeropyrum pernix K1]
 gi|150421626|sp|Q9YDA1|PIMT_AERPE RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|116062623|dbj|BAA79996.2| protein-L-isoaspartate O-methyltransferase [Aeropyrum pernix K1]
          Length = 260

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             ++ ++ +      G  V+++GAG G    L   L+T G R V  +E+  +     ++ 
Sbjct: 94  PGVVGRMLQLLDPQPGEKVLDVGAGSGYQSALLAELVTPGGR-VYAVERIPELAEYAREN 152

Query: 90  SSQHPNR 96
             +   R
Sbjct: 153 LEKTGYR 159


>gi|109039399|ref|XP_001098011.1| PREDICTED: hemK methyltransferase family member 1 isoform 2 [Macaca
           mulatta]
          Length = 338

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS--QHPNRLE 98
           + GS     ++E+G G G ++  LL  L   +VI ++K +    +  + +   Q  +R+ 
Sbjct: 154 AVGSPGSPLILEVGCGSGAISLSLLSQLPQSRVIAVDKGEAAISLTHENAQRLQLQDRIW 213

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           II  D                 +I+N PY
Sbjct: 214 IIHLDMTSERSWTHLPWGPVDLVISNPPY 242


>gi|90022111|ref|YP_527938.1| cyclopropane-fatty-acyl-phospholipid synthase [Saccharophagus
           degradans 2-40]
 gi|89951711|gb|ABD81726.1| cyclopropane-fatty-acyl-phospholipid synthase [Saccharophagus
           degradans 2-40]
          Length = 426

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 6/126 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQH 93
           L  I +         ++EIG G G +          KV      +Q   +       +  
Sbjct: 189 LDHICKQLNLQPTDHLLEIGTGWGGMAIYAAKHYGCKVTTTTISEQQYLYAKQAIEKAGL 248

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--ISADTWPPFWESLT 151
            N++ ++Q D   +D +  F+    I +I  + Y+  T+       +         +++T
Sbjct: 249 ENKVTLLQKDYRDLDGQ--FDKLVSIEMIEAVGYDFYTQYFAKCSSLLKPDGLMLIQAIT 306

Query: 152 LLFQKE 157
              Q+ 
Sbjct: 307 TTDQRY 312


>gi|47217363|emb|CAG11068.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 876

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 6/131 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +K  + +      TV++IG G G L       GA +V   E  +  + +  ++ + +   
Sbjct: 182 QKAIQKAVQSGRTTVLDIGTGTGILGMCAKKAGAAEVYACELSKTMYELAGEVVAANG-- 239

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
              +  D  K+   K   +  P  I         + +    + +  +         L   
Sbjct: 240 ---MDGDI-KILHMKSLEMEVPKDIPQRAATVFSSNINVKGLKSSRFLKSVFPRVSLVVT 295

Query: 157 EVGERITAQKN 167
           E  +     + 
Sbjct: 296 ETVDAGLFGEG 306


>gi|326428781|gb|EGD74351.1| hypothetical protein PTSG_06361 [Salpingoeca sp. ATCC 50818]
          Length = 436

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            E  G  D + +IE+G G G  T + L   A+  I I+ ++ F            + +  
Sbjct: 236 VEKLGGRDNVCLIEVGCGTGE-TIIPLASAAKYCIGIDINEDFIKY--SQVQNKADNVRF 292

Query: 100 IQDDALKV 107
           +  DA K+
Sbjct: 293 VCGDATKL 300


>gi|297171177|gb|ADI22186.1| SAM-dependent methyltransferases [uncultured gamma proteobacterium
           HF0200_34B07]
          Length = 256

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDL---NILKKIAESSGSLDGITVIEIGAGPGNL 61
           + S   +  +  Y+++     G NF +     N  KK+ E         V+++G G G  
Sbjct: 13  DSSQYSRASILQYELV----FGPNF-VSPGGLNFAKKLIEQLALPSISRVLDVGCGLGGS 67

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFN 114
             ++          I+       + ++  S +   N +     D L ++ +++++
Sbjct: 68  AFLMAQKFNLLADGIDLSSNMLTLARERLSAYGLENHITFNHQDCLTLNLKEYYD 122


>gi|254430054|ref|ZP_05043761.1| putative methyltransferase [Alcanivorax sp. DG881]
 gi|196196223|gb|EDX91182.1| putative methyltransferase [Alcanivorax sp. DG881]
          Length = 205

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDA 104
           L G+ V+++ AG G L    L+ GAR+ +++EK +     L + ++     R+ +   DA
Sbjct: 62  LPGLRVLDLFAGSGALGAEALSRGAREAVLVEKQRDRSADLNRQLTPLFEGRITVHCADA 121

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIG 130
           L     +     +   +  + PY++G
Sbjct: 122 LSWLPAQ---REAFDLVFIDPPYDLG 144


>gi|149926678|ref|ZP_01914938.1| protein-L-isoaspartate O-methyltransferase, putative [Limnobacter
           sp. MED105]
 gi|149824607|gb|EDM83823.1| protein-L-isoaspartate O-methyltransferase, putative [Limnobacter
           sp. MED105]
          Length = 222

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-N 95
            +I +         V+EIG G G +   L+      V  IE +     + +    ++   
Sbjct: 72  ARILQELELGTHEKVLEIGTGTGYM-AALMAQQCAHVTTIELNPAVAELARSNLKKNGIT 130

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           R+++++           F ++  +     +  +  T ++   +  +   P    + ++ Q
Sbjct: 131 RVKVLEGCG--------FQLAPTLGQFDAIVLSGATPIMPAGL-LEAVNPLGRLMAVIGQ 181

Query: 156 KEVGERITAQK 166
               + + A+K
Sbjct: 182 APAMQLVLARK 192


>gi|126460545|ref|YP_001056823.1| methyltransferase type 11 [Pyrobaculum calidifontis JCM 11548]
 gi|126250266|gb|ABO09357.1| Methyltransferase type 11 [Pyrobaculum calidifontis JCM 11548]
          Length = 194

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          G +V+++G G G L + L+  G  +++ ++ D       K     
Sbjct: 42 GDSVLDVGTGFGVLLEYLVRRGVGRIVTVDVDPSALGAAKRRFRD 86


>gi|78369416|ref|NP_001030385.1| hemK methyltransferase family member 1 [Bos taurus]
 gi|74354715|gb|AAI02829.1| HemK methyltransferase family member 1 [Bos taurus]
          Length = 321

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRL 97
              G+  G  ++E+G G G ++  LL+   + +V  ++K +    +  + +   +  +R+
Sbjct: 146 RVVGAEGGPLILEVGCGSGAISLSLLSRLPQSRVTAVDKGEAAICLTHENAQRLRLQDRI 205

Query: 98  EIIQDDA-LKVDFEKFFNISSPIRIIANLPY 127
           +I+  D  L   +           +++N PY
Sbjct: 206 QIVPFDVTLVESWAHLLPWGPVDLVVSNPPY 236


>gi|297171294|gb|ADI22300.1| SAM-dependent methyltransferases [uncultured actinobacterium
           HF0200_46I24]
          Length = 218

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDL---NILKKIAESSGSLDGITVIEIGAGPGNL 61
           + S   +  +  Y+++     G NF +     N  KK+ E         V+++G G G  
Sbjct: 13  DSSQYSRASILQYELV----FGPNF-VSPGGLNFAKKLIEQLALPSISRVLDVGCGLGGS 67

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFN 114
             ++          I+       + ++  S +   N +     D L ++ +++++
Sbjct: 68  AFLMAQKFNLLADGIDLSSNMLTLARERLSAYGLENHITFNHQDCLTLNLKEYYD 122


>gi|315924413|ref|ZP_07920635.1| ribosomal protein L11 methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622292|gb|EFV02251.1| ribosomal protein L11 methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 315

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
                 V ++G G G L+ +   LGA+KV+ ++ D       +   +      ++ I + 
Sbjct: 172 LHPDDLVYDVGCGSGILSIVAGKLGAQKVVGVDFDPVAVDAARSNVALNDLSEQVGIEEG 231

Query: 103 DALKV 107
           D L+V
Sbjct: 232 DLLEV 236


>gi|284113147|ref|ZP_06386604.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283829700|gb|EFC34027.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 272

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E+    D   V+EIG G G    +L  +G R V  IE        L + + Q
Sbjct: 120 PYIVAYMTEALRLNDQERVLEIGTGSGYQAAVLAKVGVR-VFTIEI----VEELAERAHQ 174

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
             +RL I +  +   D  + +   +P    I+   P +I   LL   
Sbjct: 175 TFDRLGIPRITSRTGDGYQGWPEEAPFDAIILTAAPEHIPQPLLDQL 221


>gi|219126364|ref|XP_002183429.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405185|gb|EEC45129.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 263

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 18/111 (16%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV-IEKDQQFFPILKDISSQHPNRLEI 99
           E     DG  ++++G G G LTQ L  L    V+  ++ D       +            
Sbjct: 37  ELIQVSDGQRILDVGCGSGELTQALSHLAKNLVVTGMDADPDMVAKARQQFPS------- 89

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
              D  + D   F        + +N           +WI A         +
Sbjct: 90  --CDFFQGDMRNFEVPEPVDVLFSNA--------ALHWIPAKDAGRAVACM 130


>gi|149374750|ref|ZP_01892523.1| cyclopropane-fatty-acyl-phospholipid synthase [Marinobacter
           algicola DG893]
 gi|149360639|gb|EDM49090.1| cyclopropane-fatty-acyl-phospholipid synthase [Marinobacter
           algicola DG893]
          Length = 422

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQH 93
           L  I        G  V+EIG G G             V       +   + ++       
Sbjct: 184 LDTICRKLDLQPGDRVVEIGTGWGGFAVHAAKHYGCHVTTTTISAEQLELAREKVREEHL 243

Query: 94  PNRLEIIQDD 103
            +R+ ++ DD
Sbjct: 244 EDRITLLFDD 253


>gi|88858122|ref|ZP_01132764.1| hypothetical protein PTD2_12069 [Pseudoalteromonas tunicata D2]
 gi|88819739|gb|EAR29552.1| hypothetical protein PTD2_12069 [Pseudoalteromonas tunicata D2]
          Length = 220

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 33  LNILKKIAE---SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP----I 85
            +I++ IA    +      I V+E+G GPG     L   G   V  +E            
Sbjct: 23  EDIIRFIARNFYAVEDRATIKVLEVGCGPGANIWYLAREG-FSVYAVEGSASAIEKAHNR 81

Query: 86  LKDISSQHPNRLEIIQDDALK--VDFEKFFNISSPIRIIANLP 126
           L          L++   D L    D E F  +     I  N  
Sbjct: 82  LAAEVPHWQGELKV--GDFLHLPFDDESFDAVIDIEAISCNEF 122


>gi|118581244|ref|YP_902494.1| protein-L-isoaspartate O-methyltransferase [Pelobacter propionicus
           DSM 2379]
 gi|209573143|sp|A1ASW6|PIMT2_PELPD RecName: Full=Protein-L-isoaspartate O-methyltransferase 2;
           AltName: Full=L-isoaspartyl protein carboxyl
           methyltransferase 2; AltName: Full=Protein L-isoaspartyl
           methyltransferase 2; AltName:
           Full=Protein-beta-aspartate methyltransferase 2;
           Short=PIMT 2
 gi|118503954|gb|ABL00437.1| protein-L-isoaspartate O-methyltransferase [Pelobacter propionicus
           DSM 2379]
          Length = 225

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E+        V+EIG G G     +L+     V  +E+ ++     +     
Sbjct: 75  PYIVAYMTEALELSSSDRVLEIGTGSGY-AAAVLSRIVHTVYSVERLEELARGARQRLES 133

Query: 93  H-PNRLEIIQDD 103
              N +E+ + D
Sbjct: 134 LGYNNVEVFEGD 145


>gi|119384761|ref|YP_915817.1| methyltransferase small [Paracoccus denitrificans PD1222]
 gi|119374528|gb|ABL70121.1| methyltransferase small [Paracoccus denitrificans PD1222]
          Length = 252

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 40  AESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           A +  +  G +V+E+G G G  +  +   +   ++  +E    +  + +  ++ +    E
Sbjct: 33  AAACPARTGESVLELGCGAGVAMLCLGARVPGLRLAGLELQPSYAELARQNAATNAIAAE 92

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           + Q D  +          S   +IAN PY IG
Sbjct: 93  LHQGDLAR--MPAALREQSFDHVIANPPYFIG 122


>gi|157827959|ref|YP_001494201.1| 16S rRNA methyltransferase GidB [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|166224609|sp|A8GQL8|RSMG_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase G;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase; Short=16S rRNA m7G methyltransferase
 gi|157800440|gb|ABV75693.1| glucose-inhibited division protein B [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 191

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 11  KTILSHYKIIPK--KYMGQ--NFLLDLNIL-----KKIAESSGS-----LDGITVIEIGA 56
           + I+   +I  K  K   +  N L+  N +     + I +S           I +++IG+
Sbjct: 5   REIIEKLEIFQKLVKKWNKSIN-LVSDNTIHNFWQRHILDSLQLIQYIDNKEIHLVDIGS 63

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           G G    +L   G  +V +IE D +    L+  S    N ++II     KV+ +      
Sbjct: 64  GAGLPGIVLSIAGVAQVSLIEADLRKCIFLEKASKISNNNVQIINQRIEKVEIDCSILTC 123

Query: 117 SPIRIIANLPY---NIGTRLLFNWISADTWPPFW 147
                +  +     NI  R  F  +    +    
Sbjct: 124 RAFSNLNTIFNCIKNISVREKFLLLKGKNYLTEI 157


>gi|329941278|ref|ZP_08290557.1| type 11 methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329299809|gb|EGG43708.1| type 11 methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 355

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 44  GSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
               G  ++++G+G G  L   L    A   + +E+       L+D +      +RL+I 
Sbjct: 181 RLSAGGPLLDVGSGIGGALLSTLTAYPALHAVAVERAADVAEELRDRAEAADVASRLDIR 240

Query: 101 QDDALKVDFEKFFNIS 116
           + DA  +D E  + + 
Sbjct: 241 RTDARHLDDEAAYTVC 256


>gi|328676686|gb|AEB27556.1| 23S rRNA (uracil-5-) -methyltransferase RumA [Francisella cf.
           novicida Fx1]
          Length = 449

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++++  E     +  ++I++  G GN T  + +  A+ VI +E +       K+ +
Sbjct: 285 INKKMIQRAIELLDISENDSIIDLFCGLGNFTLPI-SQHAKTVIGVEGEPTMVKRAKETA 343

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISS 117
           + +     I+  +    +  + F    
Sbjct: 344 ADN----NIVNVNFYAANLFESFEDKE 366


>gi|315056085|ref|XP_003177417.1| lovastatin nonaketide synthase [Arthroderma gypseum CBS 118893]
 gi|311339263|gb|EFQ98465.1| lovastatin nonaketide synthase [Arthroderma gypseum CBS 118893]
          Length = 3923

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 9/138 (6%)

Query: 40   AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEKDQQFFPILKDISSQHPNR 96
            A+ +     + +IEIGAG G  T+M+L    +        +    FF   +   SQ+ +R
Sbjct: 1374 AQVAYRYPRMNIIEIGAGTGGSTRMILPTLGKAFSTYTFTDISSGFFEAAEKRFSQYSDR 1433

Query: 97   LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL------LFNWISADTWPPFWESL 150
            +     D  K   E+ F       ++A+   ++G  +      +   +    W    E  
Sbjct: 1434 MIFKTLDMEKDLSEQGFTEGHYDMVLASNVLHVGPDIDLTLSNVRKLVKPGGWLINMEVA 1493

Query: 151  TLLFQKEVGERITAQKNS 168
            T       G  ++     
Sbjct: 1494 TYFPSLREGFSMSGFPGW 1511


>gi|294497667|ref|YP_003561367.1| hypothetical protein BMQ_0900 [Bacillus megaterium QM B1551]
 gi|294347604|gb|ADE67933.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
          Length = 283

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +      +V+EIG G GN T  +     +++  ++        L+  S    N L+ I+ 
Sbjct: 68  AFLNPNDSVMEIGPGWGNYTFSIADY-VKELTCMDCSPSIIRYLQTQSDARSN-LKFIEG 125

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              K ++E+  +    +  I N  Y +   ++   ++ + 
Sbjct: 126 ---KWEYERLTDNYDAVVGI-NCFYRM-HNIVDGLLNMND 160


>gi|262202402|ref|YP_003273610.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Gordonia bronchialis DSM 43247]
 gi|262085749|gb|ACY21717.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Gordonia bronchialis DSM 43247]
          Length = 413

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 29  FLLDLNILKK------IAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQ 81
           +L D  I K       I  +     G T+ +IGAG G+++ + L   G    +  E+D  
Sbjct: 233 YLHDGQITKSAHRALTIC-ALEPAGGQTLWDIGAGSGSISVEWLRAAGRGHAVAFERDPH 291

Query: 82  FFPILKDISSQH--PNRLEIIQD--DAL 105
               +++ + QH   + + ++    DAL
Sbjct: 292 RAGRIRENARQHGVASAITVLGGAPDAL 319


>gi|194476802|ref|YP_002048981.1| Mg-protoporphyrin IX methyl transferase [Paulinella chromatophora]
 gi|171191809|gb|ACB42771.1| Mg-protoporphyrin IX methyl transferase [Paulinella chromatophora]
          Length = 245

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            +  +V + G G G+LT  L  LGA+ +   +  +     ++  +      +  +  +A
Sbjct: 75  TENESVCDAGCGVGSLTLPLAQLGAKSITASDISEAMVEEVQRRARAADIDVSRVNFNA 133


>gi|167720822|ref|ZP_02404058.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia pseudomallei
           DM98]
          Length = 264

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 82  DAIFGRRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 141

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V  +                    +    +    D W         L Q   
Sbjct: 142 IIQHDAVEVLAQMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 186

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A      Y   +       +
Sbjct: 187 VAQLAAHLKPGAYLHCATDWQNYAE 211


>gi|92117467|ref|YP_577196.1| protein-L-isoaspartate O-methyltransferase [Nitrobacter
           hamburgensis X14]
 gi|91800361|gb|ABE62736.1| protein-L-isoaspartate O-methyltransferase [Nitrobacter
           hamburgensis X14]
          Length = 680

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E+        V+EIGAG G    +L  + A  V  +E+          + ++
Sbjct: 77  PYIVAFMVEALLLTGNERVLEIGAGSGYAAAILSEIAAD-VYTVEQLGPLAEKAAGLLAE 135

Query: 93  H-PNRLEIIQDDALKVDFE 110
              + + ++  D  K   E
Sbjct: 136 LGYDNVHVLHGDGTKGWPE 154


>gi|126439840|ref|YP_001060068.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           668]
 gi|134280421|ref|ZP_01767132.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           305]
 gi|237813460|ref|YP_002897911.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|126219333|gb|ABN82839.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           668]
 gi|134248428|gb|EBA48511.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           305]
 gi|237505746|gb|ACQ98064.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia pseudomallei
           MSHR346]
          Length = 265

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 83  DAIFGRRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 142

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V  +                    +    +    D W         L Q   
Sbjct: 143 IIQHDAVEVLAQMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 187

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A      Y   +       +
Sbjct: 188 VAQLAAHLKPGAYLHCATDWQNYAE 212


>gi|331084540|ref|ZP_08333640.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401090|gb|EGG80684.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 198

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPDPSDYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRRSQYAKQI 115

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E    DA   + E    +         +  
Sbjct: 116 EFCVADA--TNRESLLGLKRNRAFTKAVSN 143


>gi|330801738|ref|XP_003288881.1| hypothetical protein DICPUDRAFT_79655 [Dictyostelium purpureum]
 gi|325081074|gb|EGC34604.1| hypothetical protein DICPUDRAFT_79655 [Dictyostelium purpureum]
          Length = 463

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 9/144 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRL 97
           A+S+       V+++G G G  T  +      ++  +  +++   I    +      +R 
Sbjct: 232 ADSARITKDSLVLDVGCGVGGPTLEICQYTGCRIRGLNINKKQVGIATQRAKDLGVADRA 291

Query: 98  EIIQDDALKVDFEKF-FNISSPIRIIANLPYNIG-TRLLFNWISADTWPPFWESLTLLFQ 155
                DA+K+ +    F+  +      ++P      +  F  +         E L  +  
Sbjct: 292 SFDHGDAMKMPYPDNTFDAVTFFESTCHMPDKAAFLKECFRVLKPGGRLSGSEWLQCVNP 351

Query: 156 KE-----VGERITAQKNSPHYGRL 174
            E       E I A  + PH G L
Sbjct: 352 TEKDIVQFIEPICAHHSVPHMGSL 375


>gi|313886340|ref|ZP_07820065.1| methyltransferase domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924209|gb|EFR34993.1| methyltransferase domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 244

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 51  VIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKV 107
           V+++G G G L+ ML     +  V  I+ D +     +D    S + +RL  +  D    
Sbjct: 41  VLDVGTGTGILSLMLAQTYPSAMVTAIDIDDEAVRTAQDNFYRSPYGDRLTALSCDI--T 98

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             E      +   II+N PY  G +     +     
Sbjct: 99  APELALPPRTYDLIISNPPYYDGLQPATALLRQARH 134


>gi|307546426|ref|YP_003898905.1| methyltransferase [Halomonas elongata DSM 2581]
 gi|307218450|emb|CBV43720.1| predicted methyltransferase [Halomonas elongata DSM 2581]
          Length = 217

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDA 104
           L G  V+++ AG G L    L+ GA   I++E D +    L+D  +        ++  D 
Sbjct: 68  LAGARVLDLFAGTGALGLEALSRGAHDAILVELDARASRALEDNLATLGITHARVVNADV 127

Query: 105 LKV 107
           ++ 
Sbjct: 128 MRF 130


>gi|254500175|ref|ZP_05112326.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Labrenzia alexandrii DFL-11]
 gi|222436246|gb|EEE42925.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Labrenzia alexandrii DFL-11]
          Length = 385

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRL 97
              +G   G +V+EIG G G   + +       V  +   ++ +   ++    +    ++
Sbjct: 161 VRQTGIEPGHSVLEIGCGWGGFAEHVAKTVGANVRGLTISREQYDYARERIFKAGLNEKV 220

Query: 98  EIIQDD 103
           EI+  D
Sbjct: 221 EIVFQD 226


>gi|134103183|ref|YP_001108844.1| cyclopropane-fatty-acyl-phospholipid synthase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003875|ref|ZP_06561848.1| cyclopropane-fatty-acyl-phospholipid synthase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915806|emb|CAM05919.1| cyclopropane-fatty-acyl-phospholipid synthase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 412

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHP 94
           + +  + +G   G  ++EIG G G+L       GAR   + +  +Q+     +  ++   
Sbjct: 182 IDRALDVAGVHAGTRLLEIGTGWGSLALRAAERGARVTSLTLSAEQRKLARQRIAAAGLA 241

Query: 95  NRLEIIQDD 103
           +R+E+   D
Sbjct: 242 DRVEVHLRD 250


>gi|21230734|ref|NP_636651.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66769270|ref|YP_244032.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|23822130|sp|Q8PB48|RUMA_XANCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|81304771|sp|Q4USG1|RUMA_XANC8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|21112328|gb|AAM40575.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574602|gb|AAY50012.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 444

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 31  LDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           ++ ++ +K+   +     +     V+++  G GN T  L     R+V+ +E D       
Sbjct: 277 VNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLART-VREVVGVEGDAGLVARA 335

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           ++ + ++  +  +    D  +   +  +      +++ + P +    +L   
Sbjct: 336 RENAQRNGLDNAQFYAADLTQDQRQTAWMRQGFDKLLLDPPRSGAIDVLQQL 387


>gi|13474514|ref|NP_106083.1| hypothetical protein mll5414 [Mesorhizobium loti MAFF303099]
 gi|14025268|dbj|BAB51869.1| mll5414 [Mesorhizobium loti MAFF303099]
          Length = 275

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + + I     ++ G  V+++GAG G +       GA +VI  E D+     +   ++ + 
Sbjct: 108 LARHILNHPKTVAGRRVLDLGAGSGIVGIAAAKAGASEVIAAEIDRNGVAAIGLNAAANG 167

Query: 95  NRLEIIQDDA 104
             + I+  D 
Sbjct: 168 VEITIVHQDI 177


>gi|186683456|ref|YP_001866652.1| methyltransferase type 12 [Nostoc punctiforme PCC 73102]
 gi|186465908|gb|ACC81709.1| Methyltransferase type 12 [Nostoc punctiforme PCC 73102]
          Length = 274

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 13/150 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            ++  ++AE +       ++E+G GP   T     LG   +I +E +  FF + +     
Sbjct: 39  EDLTHQVAEIAQLSTNSKILEVGCGPATATIAFAQLGC-SMICLEPNPDFFRLAQQNCRM 97

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
           +PN +EI        +            + A+  + I       +  A        +L L
Sbjct: 98  YPN-VEIEN---TSFEEWTLQPSKFDAVLAASSFHWISPE--VGYQKAANALQQTGNLIL 151

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
           L+ KE+      Q +S  Y RLS +     
Sbjct: 152 LWNKEL------QPSSEVYQRLSKIYQLYA 175


>gi|330508464|ref|YP_004384892.1| methyltransferase domain-containing protein [Methanosaeta concilii
           GP-6]
 gi|328929272|gb|AEB69074.1| methyltransferase domain protein [Methanosaeta concilii GP-6]
          Length = 297

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N ++++   +   +   V++IGAGPG L   L    A  V  +E       ++++  ++
Sbjct: 51  QNRIERVIWETDITEKSRVLDIGAGPGTLAIPLA-QKATHVTAVEPADGMCSVMREKMAE 109

Query: 93  HP-NRLEIIQ 101
           +    + I+Q
Sbjct: 110 YGVENITIVQ 119


>gi|311893651|dbj|BAJ26059.1| putative methyltransferase [Kitasatospora setae KM-6054]
          Length = 254

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
            +     G TV+++G GPG     L      A  V+ ++ D++      + ++  P  ++
Sbjct: 31  AALAVEPGQTVVDLGCGPGTDLPALAAATGPAGSVLGVDHDREAVDAAAERTAHLPG-VD 89

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           +   D   +      +          +  ++    L
Sbjct: 90  VRLGD---LHELPLADGGCDRARTDRVLQHVADPAL 122


>gi|258509598|ref|YP_003172349.1| SAM-dependent methyltransferase [Lactobacillus rhamnosus GG]
 gi|257149525|emb|CAR88498.1| SAM-dependent methyltransferase [Lactobacillus rhamnosus GG]
 gi|259650864|dbj|BAI43026.1| putative methyltransferase [Lactobacillus rhamnosus GG]
          Length = 274

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 10/110 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPIL-------KD 88
           IA++     G  ++EIG G G+L+ +L         V   D   + +   L         
Sbjct: 34  IADAWQIQPGENILEIGCGQGDLSAVLADQVGPNGHVTGIDIASRDYGAPLTLGQAWDHL 93

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           ++    +RL +  D  L        N      ++A+  +   +   F  +
Sbjct: 94  LNGPLASRLTVHFDTNLTASLGPVANQHFDRIVMAHSLWYFASANAFALL 143


>gi|220915946|ref|YP_002491250.1| methyltransferase small [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953800|gb|ACL64184.1| methyltransferase small [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 386

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
           A     LDG    ++G G G L  +L   GAR VI  + + +     ++ +++     ++
Sbjct: 197 AAKERPLDGKRAFDVGTGTGVLALVLARAGAR-VIATDLEPRAVACARENAARLGLAGQV 255

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E+++ D         F       I+ N P+
Sbjct: 256 EVVEAD--------LFPEGLADVIVCNPPW 277


>gi|210614221|ref|ZP_03290116.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787]
 gi|210150798|gb|EEA81806.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787]
          Length = 311

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L    A  V+  +  ++   + K    ++ + +
Sbjct: 118 KVTELLNPDPTDYILDIACGNGNYSAYLAE-KAVSVLAFDYSEKMVELAKKRQKRYADHI 176

Query: 98  EIIQDDALKVDFEKFFNISSPI 119
           E    DA           + P 
Sbjct: 177 EFCVADATNETSLMALKRNKPF 198


>gi|13432164|sp|Q50203|RSMG_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase G;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase; Short=16S rRNA m7G methyltransferase;
           AltName: Full=Glucose-inhibited division protein B
          Length = 245

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPIL 86
           N L D ++L     +     G  V++IG+G G     L       +V+++E   +    L
Sbjct: 63  NRLWDRHLLNSAVVAELLDPGDRVVDIGSGAGLPGLPLAIARPDLQVVLLEPLLRRVTFL 122

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
           +++ ++    +E+++  A ++          
Sbjct: 123 REVVAELGLDVEVVRGRAEELWVRDRIGERD 153


>gi|84683608|ref|ZP_01011511.1| Protein-L-isoaspartate carboxylmethyltransferase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668351|gb|EAQ14818.1| Protein-L-isoaspartate carboxylmethyltransferase [Rhodobacterales
           bacterium HTCC2654]
          Length = 217

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPN 95
            KI ++        V+ +GAG G     +L   A  V+ +E+D       +  ++S   +
Sbjct: 68  AKILDALSIQPTELVLTVGAGLGY-GAAVLARLADFVVAVEEDDGLAGEAEGRLASDGVD 126

Query: 96  RLEIIQD 102
            + +I+ 
Sbjct: 127 NVAVIKA 133


>gi|326922768|ref|XP_003207617.1| PREDICTED: methyltransferase-like protein 5-like isoform 2
           [Meleagris gallopavo]
          Length = 229

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I  +   ++  TV ++G G G L+     LGA   +  + D +      +I + +    E
Sbjct: 43  IHNTFDDIENKTVADLGCGCGMLSIGSAMLGAGLCVGFDIDAEAL----EIFNSNLEDFE 98

Query: 99  IIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           +   D ++ D     +    +   +I N P+        + I   T     ++      K
Sbjct: 99  LTNVDVVQCDVSSLPDSMSETFDTVIMNPPFGTKHNKGMDMIFLKTALQMAKTAVYSLHK 158

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTK 183
               +   +K      ++ V+   R  
Sbjct: 159 TSTRQHVQKKADEWEVKMEVIAELRYD 185


>gi|326922766|ref|XP_003207616.1| PREDICTED: methyltransferase-like protein 5-like isoform 1
           [Meleagris gallopavo]
          Length = 212

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I  +   ++  TV ++G G G L+     LGA   +  + D +      +I + +    E
Sbjct: 43  IHNTFDDIENKTVADLGCGCGMLSIGSAMLGAGLCVGFDIDAEAL----EIFNSNLEDFE 98

Query: 99  IIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           +   D ++ D     +    +   +I N P+        + I   T     ++      K
Sbjct: 99  LTNVDVVQCDVSSLPDSMSETFDTVIMNPPFGTKHNKGMDMIFLKTALQMAKTAVYSLHK 158

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTK 183
               +   +K      ++ V+   R  
Sbjct: 159 TSTRQHVQKKADEWEVKMEVIAELRYD 185


>gi|237653519|ref|YP_002889833.1| hypothetical protein Tmz1t_2857 [Thauera sp. MZ1T]
 gi|237624766|gb|ACR01456.1| conserved hypothetical protein [Thauera sp. MZ1T]
          Length = 180

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
            TVIE+GAG G +T+ LL       +I +E        L+            ++  A K 
Sbjct: 38  DTVIELGAGTGPVTEALLRRLPGVPLIAVELQPALARRLQARFPTVD-----VRQAAAKE 92

Query: 108 DFEKFFNISSPIRIIANLPY-----NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
             +        + ++++LP+      +    + +           + +   +Q       
Sbjct: 93  VVDGLIERPGRLVLVSSLPFRSLPKEVAAATVDSLCRFLAHDGERKLVQFTYQ---PRAP 149

Query: 163 TAQKNSPHYGRLSVLT 178
            A      + R +V+ 
Sbjct: 150 FAVPRHLRWQRRTVVW 165


>gi|168486374|ref|ZP_02710882.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570629|gb|EDT91157.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           CDC1087-00]
          Length = 316

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVADG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|78189400|ref|YP_379738.1| hypothetical protein Cag_1438 [Chlorobium chlorochromatii CaD3]
 gi|78171599|gb|ABB28695.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 184

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
            L+   V++I AG G+L    L+ GA  V  +++  +    LK  +++    N++ I+  
Sbjct: 41  DLEDAHVLDIFAGFGSLGFEALSRGAASVTFVDRFHESLKALKSTAAKLGVTNKVSIVNA 100

Query: 103 DALKV 107
           DAL  
Sbjct: 101 DALAF 105


>gi|15828466|ref|NP_302729.1| 16S rRNA methyltransferase GidB [Mycobacterium leprae TN]
 gi|221230943|ref|YP_002504359.1| 16S rRNA methyltransferase GidB [Mycobacterium leprae Br4923]
 gi|254766899|sp|B8ZTN3|RSMG_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase G;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase; Short=16S rRNA m7G methyltransferase
 gi|13093896|emb|CAC32240.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219934050|emb|CAR72808.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 248

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPIL 86
           N L D ++L     +     G  V++IG+G G     L       +V+++E   +    L
Sbjct: 66  NRLWDRHLLNSAVVAELLDPGDRVVDIGSGAGLPGLPLAIARPDLQVVLLEPLLRRVTFL 125

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
           +++ ++    +E+++  A ++          
Sbjct: 126 REVVAELGLDVEVVRGRAEELWVRDRIGERD 156


>gi|302837301|ref|XP_002950210.1| hypothetical protein VOLCADRAFT_90588 [Volvox carteri f.
           nagariensis]
 gi|300264683|gb|EFJ48878.1| hypothetical protein VOLCADRAFT_90588 [Volvox carteri f.
           nagariensis]
          Length = 161

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQ 92
           ++ ++ + +    G  + ++G G G +       GAR V   E D +     +    ++ 
Sbjct: 41  VISRVLDLTAVGPGDCLYDLGCGDGRVLLAAARRGARCV-GFELDPELVRDAVTAARTAG 99

Query: 93  HPNRLEIIQDDALKVDFEK 111
             + + +++ DA   D  +
Sbjct: 100 LESLVRVVRADAATADVSE 118


>gi|147836353|emb|CAN77729.1| hypothetical protein VITISV_027411 [Vitis vinifera]
          Length = 538

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 27  QNFLLD-LNILKKIAESSGSLDGIT---VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           QN L D +      A    +    T   V+++GAG G L+      GA+ V  +E   + 
Sbjct: 189 QNMLQDYVRTGTYFAAVIENRTDFTGRVVVDVGAGSGILSLFAAQAGAKHVYAVEA-SEM 247

Query: 83  FPILKDISSQHPNRLEIIQDDALKVD 108
               + + + +P+  + I  D + +D
Sbjct: 248 AEYARKLIAGNPSLGKRITVDGVHLD 273


>gi|29831914|ref|NP_826548.1| O-methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29609031|dbj|BAC73083.1| putative O-methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 326

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ K+       DG  V+EIGAG G    +L    G  +V  ++ D +     +   +
Sbjct: 103 PSLMAKMLVELDVRDGDAVLEIGAGTGYNAALLAHRLGDEQVTTVDLDAEITESARQHLA 162

Query: 92  QHPNRLEIIQDD 103
              +   ++  D
Sbjct: 163 AAGHHPAVVTGD 174


>gi|88608508|ref|YP_506814.1| ubiquinone/menaquinone biosynthesis methlytransferase UbiE
           [Neorickettsia sennetsu str. Miyayama]
 gi|88600677|gb|ABD46145.1| ubiquinone/menaquinone biosynthesis methlytransferase UbiE
           [Neorickettsia sennetsu str. Miyayama]
          Length = 230

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKD-ISSQHP 94
           + + +S G L    V+++ AG G++T  LL      ++I+ +K+ +   I KD +  +  
Sbjct: 34  RNLVKSIGLLPNQRVLDMAAGTGDITLRLLKTHIPVEIILCDKNHEMLEIAKDRLLDEGY 93

Query: 95  NRLEIIQDDALKVDFEK 111
             L+++  DA ++ FE 
Sbjct: 94  VNLKVVSADAAQLPFED 110


>gi|323452893|gb|EGB08766.1| hypothetical protein AURANDRAFT_63897 [Aureococcus anophagefferens]
          Length = 282

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRL 97
           A+ +G      V+++G G G +       GAR+   +E D     + +   +  +  + +
Sbjct: 103 ADVAGVGPADVVVDLGCGDGRIPVWARRHGARRCGGVELDGALVDVARANVAARRLADVV 162

Query: 98  EIIQDDALKVDFEKF 112
           +I+  D    D  + 
Sbjct: 163 DIVHGDLAADDDPQV 177


>gi|295132390|ref|YP_003583066.1| hypothetical protein ZPR_0512 [Zunongwangia profunda SM-A87]
 gi|294980405|gb|ADF50870.1| protein containing methyltransferase small domain [Zunongwangia
           profunda SM-A87]
          Length = 240

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 11/137 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHP--NRLEIIQ 101
             D  +++++G G G +  M+    + ++I  IE D+  +    +        +RL    
Sbjct: 36  LEDTDSILDVGTGTGVIALMMAQRSSAQLIDAIEIDENAYEQAVENFEHSDWGDRLFCYH 95

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            +  +   E+  +      II+N P+        +   A     F ++L      E    
Sbjct: 96  AEFGEF-VEEMQDEEKYDLIISNPPFYNSDYKTAS--EARDMARFQDALPFQLLLEGATY 152

Query: 162 ITAQKNSPHYGRLSVLT 178
           + ++K     GRL+V+ 
Sbjct: 153 LLSEK-----GRLAVII 164


>gi|237654275|ref|YP_002890589.1| methyltransferase [Thauera sp. MZ1T]
 gi|237625522|gb|ACR02212.1| methyltransferase [Thauera sp. MZ1T]
          Length = 179

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDD 103
            LDG   +++ AG G L     + GA +V+++E D +    L   +      ++EI++ D
Sbjct: 42  DLDGHACLDLFAGTGILGFEAASRGAARVVLVEHDARALDALHKAAKTLQAAQVEIVRGD 101

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGT-RLLFNWISADTWPPFWESLTLLFQKEVG 159
           A++              +  + PY  G    +  W+     P  W    L  + EV 
Sbjct: 102 AVRFAQS---TPQRFDGVFLDPPYKQGWIERVSPWLDRLVRPEGW----LYVESEVA 151


>gi|126459973|ref|YP_001056251.1| methyltransferase type 11 [Pyrobaculum calidifontis JCM 11548]
 gi|126249694|gb|ABO08785.1| Methyltransferase type 11 [Pyrobaculum calidifontis JCM 11548]
          Length = 181

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           G  V+EIG G G L + L   G R V+ ++         +   +  P
Sbjct: 40 PGGRVLEIGPGTGALMKRLEAAGYR-VVGVDISPPMLKYARKRGAGDP 86


>gi|120601608|ref|YP_966008.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Desulfovibrio vulgaris DP4]
 gi|120561837|gb|ABM27581.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Desulfovibrio vulgaris DP4]
          Length = 761

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKD-QQFFPILKDISSQHPNRLE 98
            +       TV ++GAG G ++     + +R  V  +E+D  +   + ++        +E
Sbjct: 590 AALRVNPAATVWDVGAGSGAMSVECAAVASRGSVWAVERDAARVVCVEENRRRMGAANIE 649

Query: 99  IIQDDALKVDFEKFFNISSPIRII 122
           ++  DA         ++ +P R+ 
Sbjct: 650 VVHGDA----PACLASLPTPDRVF 669


>gi|59712676|ref|YP_205452.1| protein-L-isoaspartate O-methyltransferase [Vibrio fischeri ES114]
 gi|75431529|sp|Q5E332|PIMT_VIBF1 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|59480777|gb|AAW86564.1| L-isoaspartate protein carboxylmethyltransferase type II [Vibrio
           fischeri ES114]
          Length = 208

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+E+G G G  T +L  L    V  IE+       L+  + +
Sbjct: 61  PYIVAKMTELLELTPTSNVLEVGTGSGYQTAVLAKL-VEHVNSIER----IKSLQWNAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L+I        D  K +   +P    I+     +I   LLF  
Sbjct: 116 LLKQLDIYNVSTKHGDGWKGWESKAPFDAIIVTAAAESIPNDLLFQL 162


>gi|218290933|ref|ZP_03494990.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218239098|gb|EED06301.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 234

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQHP--NR 96
                     V+++ AG G  T  +      +  V+  D  +    + ++   +    +R
Sbjct: 41  RQLPLTPKSQVLDVAAGTGAWTFAIAKRLGPEGRVVGLDFTEAMLEVAEERRQRFAFRDR 100

Query: 97  LEIIQDDALKVDFEKF-FNISSPIRIIANLP 126
           ++ +  DA+ + F    F++ +    + N+P
Sbjct: 101 VQFVHGDAMNLPFPDNTFDLCTIGFALRNMP 131


>gi|284009768|ref|NP_001164999.1| hypothetical protein LOC100327245 [Xenopus (Silurana) tropicalis]
 gi|169641900|gb|AAI60567.1| Unknown (protein for MGC:136054) [Xenopus (Silurana) tropicalis]
          Length = 596

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 14/132 (10%)

Query: 13  ILSHYKIIPKKYMGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +   + + PKK   Q+   ++  L K+    S       V++IG+G G+L++ L      
Sbjct: 129 LFRKH-VKPKK---QH---EIRQLGKLVRILSEVTGCEQVVDIGSGQGHLSRFLSFGQGL 181

Query: 72  KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            V  +E D+    +           LE       K       + + P  ++A +      
Sbjct: 182 SVTAVEADKHLVTMAAKFDHDLMYMLE------KKSHIITDLSPNPPRHVMAWVDPKASW 235

Query: 132 RLLFNWISADTW 143
             L   +   + 
Sbjct: 236 EDLAKQLGECSC 247


>gi|218782583|ref|YP_002433901.1| methyltransferase type 12 [Desulfatibacillum alkenivorans AK-01]
 gi|218763967|gb|ACL06433.1| Methyltransferase type 12 [Desulfatibacillum alkenivorans AK-01]
          Length = 250

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          +A++     G  V+EIG+G G+LT+ LL    R     + +     I + ++   P
Sbjct: 42 MADAIRPFVGEKVLEIGSGIGSLTKKLLPR--RSYTCTDINPFHLEITRRLTESRP 95


>gi|150020995|ref|YP_001306349.1| hypothetical protein Tmel_1109 [Thermosipho melanesiensis BI429]
 gi|149793516|gb|ABR30964.1| protein of unknown function DUF1130 [Thermosipho melanesiensis
           BI429]
          Length = 298

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 208 FIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL-LHQAGIETNLRAENLS- 265
                NPI           +  F   RKTL+ +L+ L  E + L + GI++N R ++LS 
Sbjct: 183 IDVRKNPISM---------KYGFS--RKTLKNALENLNIEYIHLPELGIDSNKR-KDLST 230

Query: 266 IEDFCRITNILTDN 279
           +ED+  +      N
Sbjct: 231 LEDYNVLFEYYKKN 244


>gi|150396423|ref|YP_001326890.1| DNA-cytosine methyltransferase [Sinorhizobium medicae WSM419]
 gi|150027938|gb|ABR60055.1| DNA-cytosine methyltransferase [Sinorhizobium medicae WSM419]
          Length = 632

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           TV+EI AG G ++  L   G   V ++E D      L+           +I++D   +DF
Sbjct: 281 TVVEICAGAGGMSLGLERAGFEHVALVEYDNHAAATLRRNRRDW----TVIREDVRTMDF 336

Query: 110 E-------KFFNISSPIRIIANLPYNIGTRLLFNWI 138
                      +   P +  ++  Y +G     + +
Sbjct: 337 RLYRQLEIDLVSGGPPCQPYSSDGYGLGKEDPRDLL 372


>gi|72160609|ref|YP_288266.1| hypothetical protein Tfu_0205 [Thermobifida fusca YX]
 gi|71914341|gb|AAZ54243.1| hypothetical protein Tfu_0205 [Thermobifida fusca YX]
          Length = 267

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L D   ++ +        G  V+++ AG G +T  LL LG R+V  ++       +L+  
Sbjct: 42  LRDTGEVRHLVGLVRPHPG-PVLDLAAGSGRITLPLLALG-REVTALDLSADMLALLRQQ 99

Query: 90  SSQHPNRL----EIIQDD 103
             + P  L     ++Q D
Sbjct: 100 LDRAPAHLRERCTVVQAD 117


>gi|118580607|ref|YP_901857.1| putative methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118503317|gb|ABK99799.1| putative methyltransferase [Pelobacter propionicus DSM 2379]
          Length = 187

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 4/111 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           I +S   LDG  V+++ AG G L    L+ GA     +EKD++    L+   ++++   R
Sbjct: 35  IIQSRYELDGARVLDMCAGTGGLGIEALSRGASTCCFVEKDREALKCLRQNLLATRCAER 94

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY--NIGTRLLFNWISADTWPP 145
             +++ D L+         S    I  + PY   + T ++ +  S +   P
Sbjct: 95  ATLLEMDLLRALPLLAGRGSRFSIIFFDPPYASELYTPVMRSLSSLELLEP 145


>gi|315124859|ref|YP_004066863.1| putative sugar transferase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018581|gb|ADT66674.1| putative sugar transferase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 319

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 25/147 (17%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            + Q+ L    I   I + S        +EI  G G+L   LL L     I    D    
Sbjct: 98  RLSQHILK---IKDSILKYS--KKSDIFLEIAPGQGDL---LLALSKEAQICYSIDP--- 146

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L D      N + +          + FF+ +   ++   + + I      + +     
Sbjct: 147 STLSDKYCICDNIIHV----------KSFFDKNIVYKLKHKINFII----FRHLLEHIDT 192

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPH 170
           P  +    +   +E G       N+  
Sbjct: 193 PLTFLQDVVDLLEENGMIYIEVPNAND 219


>gi|296504727|ref|YP_003666427.1| protein arginine N-methyltransferase [Bacillus thuringiensis
           BMB171]
 gi|296325779|gb|ADH08707.1| Protein arginine N-methyltransferase [Bacillus thuringiensis
           BMB171]
          Length = 291

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQDDA 104
           +G TV EIG G G +  +    GA+KV+  E +++   + +     +   + + ++   +
Sbjct: 38  EGKTVFEIGTGAGLIALLFARQGAKKVVTCEVNEELAELAQYNIDKAGFSDIVTVVNMKS 97

Query: 105 LKVDFEKFFNISSPIRIIANL 125
            ++  +K  + S  I      
Sbjct: 98  SELIDKKILDFSPDIIFTETF 118


>gi|282866845|ref|ZP_06275880.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
 gi|282558293|gb|EFB63860.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
          Length = 284

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 1  MTMNN---KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAG 57
          M +++   K+ SL + ++     P   + Q           +  S     G TV+E+G G
Sbjct: 1  MNLSDLRAKAPSLASGMAAADHSPDSQLSQ-----TRHRAALVASWHIAPGSTVLELGCG 55

Query: 58 PGNLTQMLLTLG--ARKVIVIEK 78
           G++T +L        +V+ ++ 
Sbjct: 56 QGDMTAVLAEAAGPDGRVVAVDV 78


>gi|255326765|ref|ZP_05367841.1| menaquinone biosynthesis methyltransferase UbiE [Rothia
           mucilaginosa ATCC 25296]
 gi|255295982|gb|EET75323.1| menaquinone biosynthesis methyltransferase UbiE [Rothia
           mucilaginosa ATCC 25296]
          Length = 243

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 25/172 (14%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQ+        K+   +  +  G  V+++ AG G  ++     G   +          
Sbjct: 40  SLGQHI----YWRKQAVAAVDAHPGQKVLDVAAGTGVSSEPFADAGVDVIAA-----DLS 90

Query: 84  PILKDISSQHPNRLEIIQDD--ALKVDFEKFFNISSPIRI--IANLPYNIG--------- 130
             + D+  +    +  +Q D  AL  D E F  ++    +  +AN P  +          
Sbjct: 91  EGMLDVGRRRRPDMTFVQADVTALPFDDETFDAVTMSYGLRNVANYPKALSEIYRVLKPG 150

Query: 131 TRLLFNWISADTWPPFWESLTLLFQK---EVGERITAQKNSPHYGRLSVLTG 179
            R++    S  T+ PF         K    +   I++   S  Y   S++T 
Sbjct: 151 GRIVILEFSTPTFAPFGAVYKNYIMKAIPPIARAISSNPESYEYLAESIITW 202


>gi|229146817|ref|ZP_04275182.1| Protein arginine N-methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228636645|gb|EEK93110.1| Protein arginine N-methyltransferase [Bacillus cereus BDRD-ST24]
          Length = 257

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQDDA 104
           +G TV EIG G G +  +    GA+KV+  E +++   + +     +   + + ++   +
Sbjct: 4   EGKTVFEIGTGAGLIALLFARQGAKKVVTCEVNEELAELAQYNIDKAGFSDIVTVVNMKS 63

Query: 105 LKVDFEKFFNISSPIRIIANL 125
            ++  +K  + S  I      
Sbjct: 64  SELIDKKILDFSPDIIFTETF 84


>gi|226938945|ref|YP_002794016.1| Pcm2 [Laribacter hongkongensis HLHK9]
 gi|226713869|gb|ACO73007.1| Pcm2 [Laribacter hongkongensis HLHK9]
          Length = 217

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             +  ++ ++         +EIG G G LT  LL   AR V  ++ 
Sbjct: 63  PRVEARLLQALDVQSDDAALEIGTGSGYLT-ALLANMARHVYSVDL 107


>gi|221068627|ref|ZP_03544732.1| methyltransferase small [Comamonas testosteroni KF-1]
 gi|220713650|gb|EED69018.1| methyltransferase small [Comamonas testosteroni KF-1]
          Length = 404

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 36  LKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-- 92
           L  +A +S    G     +IG G G L+ +LL  G + V+  +  ++      +   +  
Sbjct: 212 LDLVARASIPAAGLQQAWDIGVGTGVLSALLLKRGVKSVVATDTSERALACATENLQRLG 271

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           H +R+E+ + D         F       I+ N P+
Sbjct: 272 HASRVELQRAD--------LFAQGQAGLIVCNPPW 298


>gi|9964318|ref|NP_064786.1| putative SAM-dependent methyltransferase [Amsacta moorei
           entomopoxvirus 'L']
 gi|9944527|gb|AAG02710.1|AF250284_4 AMV004 [Amsacta moorei entomopoxvirus 'L']
          Length = 270

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 9/149 (6%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           NF  D +I              ++I+IG G G +T  L  +    V+ I+K        K
Sbjct: 28  NFQYDSSI--SFISKININKNDSIIDIGCGHGKITHYLSNITDNTVLGIDKSYDLINYAK 85

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL-PYNIGTRLLF----NWISADT 142
           +   ++  + + +  D    +     N    I +     P+     ++F       + + 
Sbjct: 86  NNYIKNNLKFKTL--DITTDNITNIINKKYDIILSFFCIPWIKNKNIVFSNIAKISNHNA 143

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSPHY 171
                 +L       +   +  +     Y
Sbjct: 144 HIYIMGALMEKTHVMLINELIKKPYWKQY 172


>gi|78224163|ref|YP_385910.1| hypothetical protein Gmet_2970 [Geobacter metallireducens GS-15]
 gi|78195418|gb|ABB33185.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 226

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D  I  +   +   L G  V+E+G G G +T+ L    AR+V+ ++ D+      +   
Sbjct: 6   TDEYI--RTITAHCDLAGKEVLEVGCGTGRITRDLA-RHARRVVAVDPDETALAKARSAV 62

Query: 91  SQHPNRLEIIQDDALKVDFEKF 112
                +   + D  L      F
Sbjct: 63  PAPNVQFLPMPDGVLHFPPASF 84


>gi|20093679|ref|NP_613526.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
 gi|19886561|gb|AAM01456.1| Predicted SAM-dependent methyltransferase [Methanopyrus kandleri
           AV19]
          Length = 146

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                 V+E+GA  G+ T + L   AR VI  EK ++ F  L++      N + ++ +D
Sbjct: 21  VKPEDIVVEVGAAAGD-TTVRLARNARLVIAFEKSEEMFERLRERVRDLDN-VIVLCED 77


>gi|288817446|ref|YP_003431793.1| ribosomal protein L11 methyltransferase [Hydrogenobacter
           thermophilus TK-6]
 gi|288786845|dbj|BAI68592.1| ribosomal protein L11 methyltransferase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751053|gb|ADO44536.1| Methyltransferase type 11 [Hydrogenobacter thermophilus TK-6]
          Length = 241

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
             G + I++G G G L   L  L ARKV+ I+ D++     +  +S   NRL+I    A 
Sbjct: 110 KRGWSAIDVGCGSGILAFALKKLSARKVLAIDIDERAIEECEKNAS--LNRLKITCLKAK 167

Query: 106 KVDFEKFFN 114
             D ++ F+
Sbjct: 168 PEDIKESFD 176


>gi|304316646|ref|YP_003851791.1| ribosomal protein L11 methyltransferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778148|gb|ADL68707.1| ribosomal protein L11 methyltransferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 308

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDD 103
                 V ++G G G L+ +   LGA+KV  ++ D     +   ++   + + +E+++ D
Sbjct: 171 VKPNNVVFDVGCGTGILSIVSSKLGAKKVYAVDLDDVAIKVASLNVKLNNLDNIEVLKSD 230

Query: 104 ALK 106
            L 
Sbjct: 231 LLH 233


>gi|255072575|ref|XP_002499962.1| protein arginine methyltransferase [Micromonas sp. RCC299]
 gi|226515224|gb|ACO61220.1| protein arginine methyltransferase [Micromonas sp. RCC299]
          Length = 1304

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 5/116 (4%)

Query: 32  DLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           D  I +++  + +G      V++IGAG G L+ M    GA KVI  E   +     +   
Sbjct: 803 DAAIARQVDRAIAGPDGCARVLDIGAGSGLLSMMAARAGAEKVIACEWHAELADCARRNV 862

Query: 91  S--QHPNRLEIIQDDALKVDFEKF--FNISSPIRIIANLPYNIGTRLLFNWISADT 142
           +  +   ++ +   D+ K+   K         + ++      +    +   +    
Sbjct: 863 ALNKMSGQVTVAHCDSAKLQRGKLGVPVEGCNVVVVDMFDAGLTGEHVLFMLEKAR 918


>gi|295839504|ref|ZP_06826437.1| methyltransferase type 11 [Streptomyces sp. SPB74]
 gi|197699394|gb|EDY46327.1| methyltransferase type 11 [Streptomyces sp. SPB74]
          Length = 289

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +  L G  V+EIGAG    ++ L+  GAR V  ++   +       I+++H  R  +++ 
Sbjct: 82  AEELAGKDVLEIGAGAAQCSRWLVAQGARPV-ALDLAHRQLQHALRIAAEHSARFPLVEA 140

Query: 103 DA 104
           DA
Sbjct: 141 DA 142


>gi|190891471|ref|YP_001978013.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhizobium etli CIAT
           652]
 gi|190696750|gb|ACE90835.1| cyclopropane-fatty-acyl-phospholipid synthase protein [Rhizobium
           etli CIAT 652]
          Length = 377

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 20/123 (16%)

Query: 1   MTMNNKSHSLKTILSHYKI----------------IPKKYMGQNFLLDLNIL--KKIAES 42
           M  N K+ S + I +HY +                      G N L        + +A++
Sbjct: 97  MNANTKAGSKRNISAHYDLGNDFYRQWLDPSMTYSSALYSTGANDLQSAQNAKYRALADA 156

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEII 100
           +G   G  V+EIG G G   +   +    KV  +   ++     ++    +   +R+E  
Sbjct: 157 TGIAPGDHVLEIGCGWGGFAEFAASELNCKVTGLTISREQLTFAEERIRKAGLDDRVEFR 216

Query: 101 QDD 103
             D
Sbjct: 217 FQD 219


>gi|146278062|ref|YP_001168221.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145556303|gb|ABP70916.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 217

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL+     K+ ++       +V+++G G G  +  ++   A  V+ +E+D+Q     +  
Sbjct: 61  LLEPRTFAKLLDTLNIQPVESVLDVGCGLGY-SCAVIARLAEAVVGLEEDEQLAAEAQRT 119

Query: 90  SSQ 92
            S 
Sbjct: 120 LSA 122


>gi|49477867|ref|YP_036899.1| N-methyl-transferase-related protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|196041709|ref|ZP_03109000.1| N-methyl-transferase-related protein [Bacillus cereus NVH0597-99]
 gi|301054337|ref|YP_003792548.1| N-methyl-transferase-related protein [Bacillus anthracis CI]
 gi|49329423|gb|AAT60069.1| N-methyl-transferase-related protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|196027478|gb|EDX66094.1| N-methyl-transferase-related protein [Bacillus cereus NVH0597-99]
 gi|300376506|gb|ADK05410.1| N-methyl-transferase-related protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 247

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
              +++E+GAG G   + +  L  +   V     +  P L   + +H  N +E+   D  
Sbjct: 41  PFQSMLELGAGNGGFARAMSNLNVKMTTV-----ELVPELVMFAKEHSTNDIEVHCADFY 95

Query: 106 KVDFEKFFNI 115
           K++FE+ F+I
Sbjct: 96  KINFEEKFDI 105


>gi|70732469|ref|YP_262231.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas
           fluorescens Pf-5]
 gi|68346768|gb|AAY94374.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas
           fluorescens Pf-5]
          Length = 423

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--S 90
           LN L++I +         ++EIG G G++          +V      ++ F   +    +
Sbjct: 179 LNKLQRICQKLALKPEDHLLEIGTGWGSMALYAAQHYGCRVTTTTLSREQFAYTRQRIEA 238

Query: 91  SQHPNRLEIIQDD 103
           +   +R+ ++ +D
Sbjct: 239 AGLQDRVTLLLED 251


>gi|311108357|ref|YP_003981210.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310763046|gb|ADP18495.1| ribosomal protein L11 methyltransferase PrmA family protein
           [Achromobacter xylosoxidans A8]
          Length = 372

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
           IG G G L  ++   G ++VI  + D +     ++   +     ++      +V+    F
Sbjct: 200 IGTGTGVLAAVIARRGGKRVIATDTDPRALACARENLERLGLSKQV------EVEETDLF 253

Query: 114 NISSPIRIIANLPY 127
                  I+ N P+
Sbjct: 254 PEGRVSLIVCNPPW 267


>gi|302771493|ref|XP_002969165.1| hypothetical protein SELMODRAFT_410045 [Selaginella moellendorffii]
 gi|300163670|gb|EFJ30281.1| hypothetical protein SELMODRAFT_410045 [Selaginella moellendorffii]
          Length = 526

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 27  QNFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           QN L D          + E+     G  V+++GAG G L+      GA+ V  +E     
Sbjct: 164 QNMLQDYVRTGTYYAAVVENRADFQGRVVVDVGAGSGILSLFAAQAGAKHVYAVEA-SSM 222

Query: 83  FPILKDISSQH---PNRLEIIQD 102
               + + + +     R+ +I  
Sbjct: 223 ADYARKLIAGNHVLSQRITVIHG 245


>gi|302784248|ref|XP_002973896.1| hypothetical protein SELMODRAFT_149478 [Selaginella moellendorffii]
 gi|300158228|gb|EFJ24851.1| hypothetical protein SELMODRAFT_149478 [Selaginella moellendorffii]
          Length = 542

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 27  QNFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           QN L D          + E+     G  V+++GAG G L+      GA+ V  +E     
Sbjct: 183 QNMLQDYVRTGTYYAAVVENRADFQGRVVVDVGAGSGILSLFAAQAGAKHVYAVEA-SSM 241

Query: 83  FPILKDISSQH---PNRLEIIQD 102
               + + + +     R+ +I  
Sbjct: 242 ADYARKLIAGNHVLSQRITVIHG 264


>gi|258645267|ref|ZP_05732736.1| precorrin-6y c5,15-methyltransferase [Dialister invisus DSM
          15470]
 gi|260402617|gb|EEW96164.1| precorrin-6y c5,15-methyltransferase [Dialister invisus DSM
          15470]
          Length = 193

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
          I   +      TV++IGAG G++T +  L      V  IE + +   ++K  + +   R
Sbjct: 27 IMVKARIAPEDTVVDIGAGTGSITVEAALCANKGIVYAIEMNPEGIDLIKQNAEKFGCR 85


>gi|182626320|ref|ZP_02954076.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
 gi|177908418|gb|EDT70960.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
          Length = 255

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             I E S        +EIG G G  T   L  G   +I IE  +      K+    + N 
Sbjct: 27  HDIMEYSKLDMHKKALEIGIGTGQATLPFLKTGCY-LIAIELGENLAEFSKNKFKAYKNF 85

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
                 + L V FE F       +   N    I +   F+WI  +   P
Sbjct: 86  ------NILNVPFEDF-------KCDENTFDLIYSATAFHWIDENIGYP 121


>gi|150401739|ref|YP_001325505.1| protein-L-isoaspartate O-methyltransferase [Methanococcus aeolicus
           Nankai-3]
 gi|166220560|sp|A6UWM1|PIMT_META3 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|150014442|gb|ABR56893.1| protein-L-isoaspartate O-methyltransferase [Methanococcus aeolicus
           Nankai-3]
          Length = 216

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH-PN 95
           I ++    +G  V+EIG G G    ++  +  +  +VI IE+  +     +    +    
Sbjct: 68  ICDALDLKEGDKVLEIGTGSGYHAAVVAEIVGKNGQVITIERIPELAEKAESTLKKLGYT 127

Query: 96  RLEIIQDD 103
            +++I  +
Sbjct: 128 NVKVICGN 135


>gi|94496638|ref|ZP_01303214.1| phospholipid N-methyltransferase [Sphingomonas sp. SKA58]
 gi|94423998|gb|EAT09023.1| phospholipid N-methyltransferase [Sphingomonas sp. SKA58]
          Length = 215

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 20/115 (17%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNIL-------KKIAESS----GSLDGITVIEI 54
           KS+   + L  + I  ++     FL    ++       + + ++             +E 
Sbjct: 15  KSNRSGSFLKQWNIFFRQ-----FLKHPGMIGSVIPSSRALVDAVLEPVDWERTRLFVEY 69

Query: 55  GAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G G G  T+ +L        +I I+ +  F   L   +     RL ++   A+ V
Sbjct: 70  GPGVGTFTRPILERMHPDATLIAIDLNLDFVAWLD--AQIDDPRLRVVHGSAIDV 122


>gi|124513076|ref|XP_001349894.1| methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23615311|emb|CAD52302.1| methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 316

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 5/123 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPN- 95
           I     +L    ++E G G G LT  L    L    +   E +++ +  ++       N 
Sbjct: 87  ICLVCNALPNKKILEAGTGTGCLTYALANSVLPNGVIHTFEYNEERYKQVQQEFDDFENI 146

Query: 96  --RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
              +     D L  +F+ F         +      +    +   +        +      
Sbjct: 147 RKNITFHHQDILNYNFDDFPLEYFDSIFLDMPNPWLCVDNMKKVLKERGVFVIFLPCIEQ 206

Query: 154 FQK 156
             K
Sbjct: 207 VYK 209


>gi|42527999|ref|NP_973097.1| hypothetical protein TDE2499 [Treponema denticola ATCC 35405]
 gi|41819044|gb|AAS13016.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
 gi|325474780|gb|EGC77966.1| hypothetical protein HMPREF9353_00813 [Treponema denticola F0402]
          Length = 253

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 3/144 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           +I        GI++++ G GPG +   L    A KV  I+  + F     D +      +
Sbjct: 39  RIIGVPVDNAGISILDAGCGPGRIAIELAIRKA-KVTGIDLIRPFLNAAMDSAQDEGVDI 97

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL-LFNWISADTWPPFWESLTLLFQK 156
           E+IQ D  K    + F+ +  +         I   + +   I+    P  W  L +   +
Sbjct: 98  ELIQGDLRKFVRPEGFDAAISMYTSFGYCSTIEEDMQILKNIAQSIKPNGWFILEMTG-R 156

Query: 157 EVGERITAQKNSPHYGRLSVLTGW 180
           E+  R   +         +VLT +
Sbjct: 157 EIAVRDFTEGEWFERAGFTVLTEY 180


>gi|134300333|ref|YP_001113829.1| 50S ribosomal protein L11 methyltransferase [Desulfotomaculum
           reducens MI-1]
 gi|172044330|sp|A4J7F1|PRMA_DESRM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|134053033|gb|ABO51004.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Desulfotomaculum reducens MI-1]
          Length = 308

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
              G +V ++G G G L      LGA +V+ ++ D+    + ++   ++   + +E+   
Sbjct: 168 IQGGESVADVGTGTGILAITSAKLGAARVLAVDLDEVAVKVSQENVERNGVQDIVEVFHG 227

Query: 103 DALKVDFEKFFNISSPIRIIANLPYN---IGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           + L     K         +IAN+  N   I    +   +    +  F  S  + F+ E  
Sbjct: 228 NLLDKVESKV------DVVIANIVANVIMILAPDVPRILKHGGY--FITSGIIQFRAEEV 279

Query: 160 ERITAQKNSPHYGR 173
            +   Q      GR
Sbjct: 280 RQKLEQTGFKILGR 293


>gi|330446959|ref|ZP_08310610.1| protein-L-isoaspartate O-methyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491150|dbj|GAA05107.1| protein-L-isoaspartate O-methyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 209

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 11/128 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E  G     +V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 62  PYIVAKMTELLGLTYQSSVLEIGTGSGYQTAVLAQL-VEHVYSVER----IKALQWQAKR 116

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWESL 150
              +LE+        D  + +    P    I+   P  +   LL   +            
Sbjct: 117 RFKQLELHNISTKHGDGWQGWASKGPFDAIIVTAAPSEVPQSLLEQLVDGGRLILP---- 172

Query: 151 TLLFQKEV 158
               Q+E+
Sbjct: 173 VGCQQQEL 180


>gi|327459751|gb|EGF06091.1| methyltransferase domain protein [Streptococcus sanguinis SK1057]
          Length = 195

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 28/177 (15%)

Query: 25  MGQN--FLLDLNI-LKKIAES--------SGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+ +              G  V+++G G G L   L        
Sbjct: 24  LGQRLTFLTDAGVFSKKMIDYGSRVLLSVLDFEAGERVLDVGCGYGPLGLTLAKAQGVTA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +Q+   + +  + ++     I Q +  +      F+      II+N P   G ++
Sbjct: 84  TMVDINQRALDLAQKNAERNQVSAHIFQSNVYE-KVNGIFD-----HIISNPPIRAGKQV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189
           +   IS           LTL+ QK+         ++      S +        ++  
Sbjct: 138 VHEVISGSYEHLTEGGDLTLVIQKK-----QGAPSAK-----SKMEAVFGNCEIVMK 184


>gi|239637473|ref|ZP_04678447.1| methyltransferase [Staphylococcus warneri L37603]
 gi|239596918|gb|EEQ79441.1| methyltransferase [Staphylococcus warneri L37603]
          Length = 241

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 13/149 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
                  +I+I +G G +  +L   G++ +  IE  QQ     K      Q  +RL + Q
Sbjct: 39  EIRKKDKIIDICSGNGVIPLLLSHKGSQTIEGIEIQQQLVDTAKRSFKYNQLDDRLLMHQ 98

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D  KV     F  S    +  N PY        N +          +   +  K     
Sbjct: 99  MDVKKVYH--HFKPSQYTVVTCNPPY-----FKDNQLHQHQKEAHKVARHEILCKLEDCL 151

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + A+      GRL ++     +A  M D+
Sbjct: 152 MAARHLLKQGGRLYMV----HRAERMMDV 176


>gi|188992421|ref|YP_001904431.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167734181|emb|CAP52389.1| RNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 470

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 31  LDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           ++ ++ +K+   +     +     V+++  G GN T  L     R+V+ +E D       
Sbjct: 303 VNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLART-VREVVGVEGDAGLVARA 361

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           ++ + ++  +  +    D  +   +  +      +++ + P +    +L   
Sbjct: 362 RENAQRNGLDNAQFYAADLTQDQRQTAWMRQGFDKLLLDPPRSGAIDVLQQL 413


>gi|126336076|ref|XP_001378754.1| PREDICTED: similar to HemK methyltransferase family member 1
           [Monodelphis domestica]
          Length = 358

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 51  VIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKV 107
           ++++  G G +   LL  L   +V+ ++K ++   + ++ + +    +R++I++ D   V
Sbjct: 174 ILDVCCGSGAIALSLLSKLTQSRVVAVDKGEEAVQLTRENAQRLHLEDRIQIVRHDITSV 233

Query: 108 DFEKFFNISSPIRIIANLPY 127
           + E+         +++N PY
Sbjct: 234 NREQLLPWGPVDFVVSNPPY 253


>gi|288905252|ref|YP_003430474.1| methyltransferase [Streptococcus gallolyticus UCN34]
 gi|288731978|emb|CBI13543.1| hypothetical methyltransferase [Streptococcus gallolyticus UCN34]
          Length = 248

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
                ++++G G G LT  L  L A   I ++  +       + + +H   ++ +  DAL
Sbjct: 30  NKNQHILDLGCGTGTLTSQLADL-ADTTIGLDSSESMI----EKAREHYADIQFVVGDAL 84

Query: 106 KVDFEKFFNI 115
            + FEK F++
Sbjct: 85  ALPFEKQFDV 94


>gi|158341400|ref|YP_001522565.1| methyltransferase, putative [Acaryochloris marina MBIC11017]
 gi|158311641|gb|ABW33251.1| methyltransferase, putative [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 32  DLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           + ++++ + +    L G   V+E G G G +   L   G  +V  I+        L + +
Sbjct: 39  NPDVIEPVVDCLKELAGNGRVLEFGIGIGRIALPLAKRGV-EVHGIDLSGAMLSKLAEKT 97

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
               +R+ +IQ D      E  F++   + +I N   N+ T+
Sbjct: 98  GG--DRIPVIQGDFATTKCEGSFSL---VYLIFNTIMNLTTQ 134


>gi|126734373|ref|ZP_01750120.1| magnesium protoporphyrin O-methyltransferase [Roseobacter sp. CCS2]
 gi|126717239|gb|EBA14103.1| magnesium protoporphyrin O-methyltransferase [Roseobacter sp. CCS2]
          Length = 230

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPNRLE 98
           A+    L G  V++ G G G +   L   GA  V+ ++       I +    +     + 
Sbjct: 52  AQLPEDLRGARVLDAGCGTGAMAVELAQRGAD-VVAVDISPALVGIAEQRMPANLAGHIT 110

Query: 99  IIQDDALKVDFEKF 112
            +  D L+     F
Sbjct: 111 WVAGDMLEATNGMF 124


>gi|77917773|ref|YP_355588.1| putative methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77543856|gb|ABA87418.1| putative methyltransferase [Pelobacter carbinolicus DSM 2380]
          Length = 229

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + K+I +  G   G   ++IG G G L   L  + + +++ ++ + +   +++D + +
Sbjct: 26  PLLAKQIVDDLGVTSG-RCLDIGTGSGALLIELGKITSLELMGLDINPETMVLVRDNAKR 84

Query: 93  HP---NRLEIIQDDA 104
           H    +R+E +  D 
Sbjct: 85  HDLPSDRIEFLHGDV 99


>gi|315607681|ref|ZP_07882675.1| methyltransferase [Prevotella buccae ATCC 33574]
 gi|315250617|gb|EFU30612.1| methyltransferase [Prevotella buccae ATCC 33574]
          Length = 188

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI-IQDDALKVDFEKFFN 114
           AG G+++  L++ G R+V+ +E D+     ++    +     +I ++ D  +        
Sbjct: 52  AGTGSISLELISRGCRQVVSVEADRDHANFIRRCMQKLGTERDILVRGDVFRFMKSCHRK 111

Query: 115 ISSPIRIIANLPYNIG 130
                 I A+ PY + 
Sbjct: 112 FD---FIFADPPYTLT 124


>gi|309361446|emb|CAP29721.2| hypothetical protein CBG_10271 [Caenorhabditis briggsae AF16]
          Length = 361

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 11/119 (9%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEK--------DQ- 80
            ++  L+KI +  G  +    I++G+G G L T          V  IE         D+ 
Sbjct: 199 TNIETLQKILDLLGVKEDDVFIDLGSGIGQLVTFAAAYTNIAHVRSIELQQVPAGFADEN 258

Query: 81  -QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
            + F  L     + P   E+   D    + E F    + I    NL ++ G  +    I
Sbjct: 259 ARQFKKLMRHFGEKPRPFELELGDFNTEETETFLKEKATIIFCNNLAFDPGLMIKLRAI 317


>gi|260438506|ref|ZP_05792322.1| ribosomal protein L11 methyltransferase [Butyrivibrio crossotus DSM
           2876]
 gi|292809095|gb|EFF68300.1| ribosomal protein L11 methyltransferase [Butyrivibrio crossotus DSM
           2876]
          Length = 334

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 4/119 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQ 101
             +   ++++G G G L+ + L LGA+ VI  + D        +    +     R E+I+
Sbjct: 185 INNETELLDVGTGSGILSVIGLMLGAKHVIGTDLDPNAIIATDENMEANGISKERYEVIE 244

Query: 102 DDALKVD-FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
            + +     +          + AN+  +I   LL   +          +  ++  KE  
Sbjct: 245 GNIIDDPAIKNHIGFEKYDVVTANILADIIIPLLPEILPHMKINGILITSGIINMKEQA 303


>gi|7705409|ref|NP_057257.1| hemK methyltransferase family member 1 [Homo sapiens]
 gi|18203634|sp|Q9Y5R4|HEMK1_HUMAN RecName: Full=HemK methyltransferase family member 1; AltName:
           Full=M.HsaHemKP
 gi|4589248|gb|AAD26417.1|AF131220_1 HEMK homolog [Homo sapiens]
 gi|5764550|gb|AAD51328.1|AF172244_1 HEMK homolog 7kb isoform [Homo sapiens]
 gi|12653971|gb|AAH00781.1| HemK methyltransferase family member 1 [Homo sapiens]
 gi|119585529|gb|EAW65125.1| HemK methyltransferase family member 1, isoform CRA_a [Homo
           sapiens]
 gi|123982676|gb|ABM83079.1| HemK methyltransferase family member 1 [synthetic construct]
 gi|123982686|gb|ABM83084.1| HemK methyltransferase family member 1 [synthetic construct]
 gi|123997355|gb|ABM86279.1| HemK methyltransferase family member 1 [synthetic construct]
 gi|307684470|dbj|BAJ20275.1| HemK methyltransferase family member 1 [synthetic construct]
          Length = 338

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS--QHPNRLE 98
           + GS     ++E+G G G ++  LL  L   +VI ++K +    +  + +   +  +R+ 
Sbjct: 154 AVGSPGSPLILEVGCGSGAISLSLLSQLPQSRVIAVDKREAAISLTHENAQRLRLQDRIW 213

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           II  D                 I++N PY
Sbjct: 214 IIHLDMTSERSWTHLPWGPMDLIVSNPPY 242


>gi|294678698|ref|YP_003579313.1| methyltransferase small domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|294477518|gb|ADE86906.1| methyltransferase small domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 253

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV-IEKDQQFFPILKDISSQHPNRLE 98
           A + G+  G +V+E+G G G  +  L       V   +E    +  + +  ++ +   LE
Sbjct: 36  AAACGAKPGQSVLELGCGAGVASLCLGWRVKGLVQAGLELQPAYADLARRNAAANGVPLE 95

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           + + D  +          +   +IAN PY   +
Sbjct: 96  VFEGDLAR--MPAALRARNYDHVIANPPYFAAS 126


>gi|262279574|ref|ZP_06057359.1| ribosomal protein L11 methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259925|gb|EEY78658.1| ribosomal protein L11 methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 298

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 15/140 (10%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL--EIIQDDA 104
               VI+ G G G L    L LGA+KV   + D Q   +L    +   NR+   +     
Sbjct: 159 KDKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQ--AVLATKQNAELNRVLDRLYVG-- 214

Query: 105 LKVDFEKFFNISSPIRIIANL---PYNIGTRLLFNWISAD---TWPPFWESLTLLFQK-- 156
           L  +F++ F       ++AN+   P         N + +D         E       +  
Sbjct: 215 LPEEFDQEFKPQQADVLVANILAGPLMALAPEFANLLKSDGEFALAGVIEEQVADVSRVY 274

Query: 157 -EVGERITAQKNSPHYGRLS 175
            E  + +  +K   ++ R+S
Sbjct: 275 SEFFDILDVEKREENWCRIS 294


>gi|293335625|ref|NP_001170456.1| hypothetical protein LOC100384449 [Zea mays]
 gi|224035955|gb|ACN37053.1| unknown [Zea mays]
          Length = 377

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
            ++    G  V+++G G G L       GARKV  +E         ++++  +   + +E
Sbjct: 59  RNAPHFQGKVVLDVGTGSGILAIWSAQAGARKVYAVEA-TNMAEHARELARANGVTDIVE 117

Query: 99  IIQDDALKVDFEKFFNI 115
           +IQ     VD  +  ++
Sbjct: 118 VIQGTVEDVDLPEKVDV 134


>gi|254487192|ref|ZP_05100397.1| N-6 DNA Methylase family protein [Roseobacter sp. GAI101]
 gi|214044061|gb|EEB84699.1| N-6 DNA Methylase family protein [Roseobacter sp. GAI101]
          Length = 553

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 10/122 (8%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEI---GAGPGNLTQ-MLLTLG 69
           +  +    KK +G  F     +   I   S      TV+E    G G    T+  L  +G
Sbjct: 1   MRTFDSRRKKDLGA-FYTHQGLTDLICAWSVQTPETTVLEPSFGGCGFLRSTRDRLAKIG 59

Query: 70  AR----KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           +     ++   + D + F +L D+  Q  +     + D L   F   +   +   ++ N 
Sbjct: 60  STSSISQIYGCDIDTRAFLLLSDVFEQPVDLERYHEGDFLDQRFPSSW-PKTFDAVVGNP 118

Query: 126 PY 127
           PY
Sbjct: 119 PY 120


>gi|209525365|ref|ZP_03273906.1| Methyltransferase type 11 [Arthrospira maxima CS-328]
 gi|209494216|gb|EDZ94530.1| Methyltransferase type 11 [Arthrospira maxima CS-328]
          Length = 342

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +         ++++GAG G  T  L   G   V  +E   +F  I+   + ++   + +
Sbjct: 135 VKEFNPPSNAPILDVGAGVGRNTLALARRG-HPVDAVELTPEFAQIIAKEAQENQLPVRV 193

Query: 100 IQDDAL 105
           IQ + L
Sbjct: 194 IQSNIL 199


>gi|254389015|ref|ZP_05004246.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197702733|gb|EDY48545.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 260

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +       V+++  G G++T  LL      V   ++ D     I +   +   +R+ ++ 
Sbjct: 48  ATVGPAPRVLDLACGTGSITDRLLRRFPDAVSTGVDLDPALLTIAEGTFAG-DDRVTLVT 106

Query: 102 DD 103
            D
Sbjct: 107 AD 108


>gi|268533724|ref|XP_002631991.1| Hypothetical protein CBG10271 [Caenorhabditis briggsae]
          Length = 364

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 11/119 (9%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEK--------DQ- 80
            ++  L+KI +  G  +    I++G+G G L T          V  IE         D+ 
Sbjct: 202 TNIETLQKILDLLGVKEDDVFIDLGSGIGQLVTFAAAYTNIAHVRSIELQQVPAGFADEN 261

Query: 81  -QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
            + F  L     + P   E+   D    + E F    + I    NL ++ G  +    I
Sbjct: 262 ARQFKKLMRHFGEKPRPFELELGDFNTEETETFLKEKATIIFCNNLAFDPGLMIKLRAI 320


>gi|302035600|ref|YP_003795922.1| cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Nitrospira defluvii]
 gi|300603664|emb|CBK39995.1| Cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Nitrospira defluvii]
          Length = 435

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 44/136 (32%), Gaps = 10/136 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I       +   ++EIG+G G L          +V      +          +Q+  
Sbjct: 195 LDLICRKLHLTEDDHLVEIGSGWGGLACHAAKTYGCRVTTTTISR----------AQYEL 244

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            +  +++D L        +    +  +      + +  +   +  + +P F++  + L +
Sbjct: 245 AVRRVREDGLSDRVRVLLSDYRDLPALGLRFDKLVSVEMIEAVGHEYYPTFFDVCSRLLK 304

Query: 156 KEVGERITAQKNSPHY 171
            +    + A      Y
Sbjct: 305 PDGLMLLQAITIDERY 320


>gi|302853845|ref|XP_002958435.1| hypothetical protein VOLCADRAFT_69442 [Volvox carteri f.
           nagariensis]
 gi|300256240|gb|EFJ40511.1| hypothetical protein VOLCADRAFT_69442 [Volvox carteri f.
           nagariensis]
          Length = 392

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 27  QNFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--Q 80
           QN L D          I  +     G  V+++GAG G L+   +  GA +V  +E     
Sbjct: 24  QNMLQDYTRTGTYYSAIVGNPEDFRGRVVMDVGAGSGILSLFAVQAGAARVYAVEASGMA 83

Query: 81  QFFPILKDISSQHPNRLEII 100
           +F  +L D +     R+ +I
Sbjct: 84  KFARMLADANPALGGRITVI 103


>gi|294814951|ref|ZP_06773594.1| Methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326443322|ref|ZP_08218056.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294327550|gb|EFG09193.1| Methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 258

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +       V+++  G G++T  LL      V   ++ D     I +   +   +R+ ++ 
Sbjct: 46  ATVGPAPRVLDLACGTGSITDRLLRRFPDAVSTGVDLDPALLTIAEGTFAG-DDRVTLVT 104

Query: 102 DD 103
            D
Sbjct: 105 AD 106


>gi|220682040|gb|ACL80147.1| methyltransferase [Actinocorallia aurantiaca]
          Length = 257

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           + G   G  V+  GAG G+L +        + +V+ ++ D +F   L +    H   + +
Sbjct: 30  ALGVGRGSRVLIAGAGGGSLVRWAAETVGLSGEVLAVDIDPRFVLPLAE----HYPNVRV 85

Query: 100 IQDDALKVDFE 110
           +Q D +  D  
Sbjct: 86  VQQDVVTQDLP 96


>gi|168703374|ref|ZP_02735651.1| methyltransferase small [Gemmata obscuriglobus UQM 2246]
          Length = 348

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 4/122 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDISSQHPN 95
           + + E +    G TV+++G G G +  +   +      V   D     I L +++++   
Sbjct: 197 RAMLEVAEIRPGDTVLDLGCGNGAVGCLAGAMAGPDARVTFIDSSLRAIALAELNAKANG 256

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
              +     +     +         I+AN PY   + +   +I              L  
Sbjct: 257 ---VTNTRFVNATRLQGLEEDKFDVILANPPYYAKSEITRLFIEGARDLLKPGGRYYLVT 313

Query: 156 KE 157
           K 
Sbjct: 314 KM 315


>gi|167580898|ref|ZP_02373772.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia thailandensis
           TXDOH]
          Length = 265

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +         I +E  +     +LK I  Q  + + 
Sbjct: 83  DAVFGRRAPRVLEIGFGMGASTAEIAAHRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 142

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V                       +    +    D W         L Q   
Sbjct: 143 IIQHDAVEVLEHMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 187

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A+     Y   +       +
Sbjct: 188 VAQLAARLKPGAYLHCATDWQNYAE 212


>gi|154412656|ref|XP_001579360.1| arginine N-methyltransferase [Trichomonas vaginalis G3]
 gi|121913566|gb|EAY18374.1| arginine N-methyltransferase, putative [Trichomonas vaginalis G3]
          Length = 319

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
           K I ++        V+++GAG G L+      GA+KV  IE   +   I + I       
Sbjct: 30  KAILDNKNEFKDKIVVDVGAGTGILSLFAAQAGAKKVYAIEC-TEIANIAEKIIKDNNFE 88

Query: 95  NRLEIIQDDALKVDFEKFFNI 115
           N + I++  A ++   +  +I
Sbjct: 89  NIITIVRGRANEITLPEKVDI 109


>gi|94986912|ref|YP_594845.1| hypothetical protein LI0469 [Lawsonia intracellularis PHE/MN1-00]
 gi|94731161|emb|CAJ54523.1| conserved hypothetical protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 624

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            L   TV+E+G G G +T+ L    A  V  +E  Q+   I         N + II
Sbjct: 83  LLKDATVLELGCGCGGITRYLAETCAH-VCSVEGSQRRASITALRCQDLTN-ITII 136


>gi|332654322|ref|ZP_08420066.1| putative zinc-binding alcohol dehydrogenase [Ruminococcaceae
           bacterium D16]
 gi|332517408|gb|EGJ47013.1| putative zinc-binding alcohol dehydrogenase [Ruminococcaceae
           bacterium D16]
          Length = 344

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 22/154 (14%)

Query: 40  AESSGSLDGITVIEIGAGPGNL--TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           A+ +      TV+ IGAGP  L   Q +L    ++VIV EKD Q    +++    HP  L
Sbjct: 160 ADIAQIGHEDTVLVIGAGPTGLCTLQCVLLKEPKQVIVCEKDPQRRSFVQE---HHPQVL 216

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF--- 154
            ++ + A         +  +       +    G++  F    +   P    ++  L+   
Sbjct: 217 TVVPEQAADFVRAHSAHGGA-----DRVLEVAGSQDTFTLAWSCARPNAIVTVVALYDAP 271

Query: 155 -----QKEVGERITAQKNSPHYGR----LSVLTG 179
                    G+ +T Q       R    LS++  
Sbjct: 272 QVLPLPDMYGKNLTFQTGGVDGCRCGEILSLIAQ 305


>gi|301601270|dbj|BAJ12167.1| putative arginine methyltransferase [Coprinopsis cinerea]
          Length = 349

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNR 96
           I  +     G TV+++G G G L+      GA+ V  I+       + + I  ++   + 
Sbjct: 60  IVNNPHLFKGKTVLDVGCGTGILSMFAAKAGAKHVTGIDM-SNIIDLAQKIIEANGFKDT 118

Query: 97  LEIIQD 102
           + +++ 
Sbjct: 119 ITLVKG 124


>gi|302678627|ref|XP_003028996.1| hypothetical protein SCHCODRAFT_78680 [Schizophyllum commune H4-8]
 gi|300102685|gb|EFI94093.1| hypothetical protein SCHCODRAFT_78680 [Schizophyllum commune H4-8]
          Length = 220

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 37  KKIA---ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQ 92
             I    + S    G  V+++G G G++   +       V V+E         KD  S Q
Sbjct: 11  DAIVKGFDFSKLAPGSKVVDVGGGMGHIVMSVAKKYPELVAVVEDRPAVVEQAKDFWSKQ 70

Query: 93  HPN-RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            PN R+E ++ D  K    K         I+ N       ++L N 
Sbjct: 71  LPNARVEFVEQDFFKPQAIKGAGAYILCHILHNWGQTQAVKILRNL 116


>gi|302518441|ref|ZP_07270783.1| SAM-dependent methyltransferase [Streptomyces sp. SPB78]
 gi|318056316|ref|ZP_07975039.1| SAM-dependent methyltransferase [Streptomyces sp. SA3_actG]
 gi|318076494|ref|ZP_07983826.1| SAM-dependent methyltransferase [Streptomyces sp. SA3_actF]
 gi|302427336|gb|EFK99151.1| SAM-dependent methyltransferase [Streptomyces sp. SPB78]
          Length = 289

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +  L G  V+EIGAG    ++ L   GAR V  ++   +       I+ +H  R  +++ 
Sbjct: 82  AEELAGKDVLEIGAGAAQCSRWLAAQGARPV-ALDLAHRQLQHALRIAEEHSARFPLVEA 140

Query: 103 DA 104
           DA
Sbjct: 141 DA 142


>gi|254491787|ref|ZP_05104966.1| Cyclopropane-fatty-acyl-phospholipid synthase family [Methylophaga
           thiooxidans DMS010]
 gi|224463265|gb|EEF79535.1| Cyclopropane-fatty-acyl-phospholipid synthase family [Methylophaga
           thiooxydans DMS010]
          Length = 397

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           N L  I        G  ++EIG G G L          +V+ I   +Q   + ++  +  
Sbjct: 168 NKLDMICRKLQLKPGEKLLEIGCGWGGLAHYAAKHYGVEVLGITISKQQQKLAQERCAGL 227

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           P  +EI    AL VD+         I  +   
Sbjct: 228 P--VEI----AL-VDYRDLDGEYDKIVSVGMF 252


>gi|242017629|ref|XP_002429290.1| protein arginine N-methyltransferase, putative [Pediculus humanus
           corporis]
 gi|212514186|gb|EEB16552.1| protein arginine N-methyltransferase, putative [Pediculus humanus
           corporis]
          Length = 335

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--P 94
           K I  +   ++G  V+++G G G L+      GA+KV  +E       + KD+  ++   
Sbjct: 30  KAIFGAKNKIEGKVVLDVGTGTGILSIFCAKAGAKKVYAVEA-SNMAKLAKDVVKENDLD 88

Query: 95  NRLEIIQD 102
           +R+E+   
Sbjct: 89  DRIEVHHC 96


>gi|218442686|ref|YP_002381006.1| methyltransferase [Cyanothece sp. PCC 7424]
 gi|218175044|gb|ACK73776.1| Methyltransferase type 11 [Cyanothece sp. PCC 7424]
          Length = 265

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ +I     +    T +E G G G L  + L      V  I+  Q+     +     
Sbjct: 26  EEVVDEIVVLVKATPVTTFLEPGVGTG-LNVLPLVKRGYCVTGIDASQEMLAQFRQKLHS 84

Query: 93  HPNRLEIIQDDALKVDFEK 111
            P  L++I  DA ++ F  
Sbjct: 85  IPPNLKLIHADASRLPFSD 103


>gi|125717117|ref|YP_001034250.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK36]
 gi|125497034|gb|ABN43700.1| Ribosomal protein L11 methyltransferase, putative [Streptococcus
           sanguinis SK36]
 gi|324994346|gb|EGC26260.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK678]
          Length = 318

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    ++++    +P    + +   
Sbjct: 170 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVVQENIELNPGMENIHVAPG 229

Query: 103 DALK 106
           D L+
Sbjct: 230 DLLR 233


>gi|29122988|gb|AAO65792.1|AF440781_11 monensin 3-O-methyl transferase [Streptomyces cinnamonensis]
          Length = 276

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI--LKDISSQH 93
             ++        G  V++IG G G     L      +V+ I    +       +   +  
Sbjct: 55  TDEMIRRLDPAPGDRVLDIGCGNGTPAMQLARARDVEVVGISVSARQVERGNRRAREAGL 114

Query: 94  PNRLEIIQDDALKVDFEK 111
            +R+   Q DA+ + F+ 
Sbjct: 115 ADRVRFEQVDAMNLPFDD 132


>gi|332559213|ref|ZP_08413535.1| methyltransferase small [Rhodobacter sphaeroides WS8N]
 gi|332276925|gb|EGJ22240.1| methyltransferase small [Rhodobacter sphaeroides WS8N]
          Length = 253

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           A +  +  G +V+E+G G G  +  L       ++  +E    +  + ++ ++ +   LE
Sbjct: 36  AAAVPASAGQSVLELGCGAGVASLCLAARVPGLRLAGLELQPAYAALARENAAMNGVALE 95

Query: 99  IIQDD--ALKVDFEKFFNISSPIRIIANLPYN 128
           +++ D  A+     + F+      +IAN PY 
Sbjct: 96  VVEGDLSAMPAALRQSFD-----HVIANPPYY 122


>gi|288924674|ref|ZP_06418611.1| methyltransferase [Prevotella buccae D17]
 gi|288338461|gb|EFC76810.1| methyltransferase [Prevotella buccae D17]
          Length = 188

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI-IQDDALKVDFEKFFN 114
           AG G+++  L++ G R+V+ +E D+     ++    +     +I ++ D  +        
Sbjct: 52  AGTGSISLELISRGCRQVVSVEADRDHANFIRRCMQKLGTERDILVRGDVFRFMKSCHRK 111

Query: 115 ISSPIRIIANLPYNIG 130
                 I A+ PY + 
Sbjct: 112 FD---FIFADPPYTLT 124


>gi|213964765|ref|ZP_03392965.1| modification methylase NaeI [Corynebacterium amycolatum SK46]
 gi|213952958|gb|EEB64340.1| modification methylase NaeI [Corynebacterium amycolatum SK46]
          Length = 333

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 10/138 (7%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-----DISSQHPNRLEIIQDDALK 106
           +EI AG G     L   G   V  +E D+     L+     D+ +    R  + +DD L 
Sbjct: 7   LEICAGAGGQALGLEQAGFYHVCTVENDRDACNTLRLNRDNDLVAAKQ-RWNVREDDVLN 65

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE---RIT 163
           ++   F  +      +   P++I  + L      D +P   E + L   K V     +  
Sbjct: 66  LNGADFKGVDLVAGGVPCPPFSIAGKQLGADDERDLFPKALEIIALADPKAVLLENVKGL 125

Query: 164 AQKNSPHYGRLSVLTGWR 181
           +Q    +Y R SVL    
Sbjct: 126 SQPRFKNY-RESVLNELY 142


>gi|167044617|gb|ABZ09289.1| putative ubiE/COQ5 methyltransferase family protein [uncultured
           marine crenarchaeote HF4000_APKG7F19]
          Length = 284

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 25/190 (13%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKD--ISSQHP 94
           I   +G   G  V+EIG G G+LT  L         V   + + +F  I +     +   
Sbjct: 88  IVARTGLTSGQKVVEIGTGSGSLTSFLAGIVKPRGHVYTYDVEPKFMKIAEKNLKKAGIS 147

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--------ADTWPPF 146
             + + + D  K        +   +  + + P+N+        +           T    
Sbjct: 148 KYVTMNEFDFKKAKKLPHSEVDLVVVDLGD-PWNV-VPQARKMLKGSGGFVAICPTMNQL 205

Query: 147 WESLTLLFQKEVGE---------RITAQKNSPHYGRLSVL-TGWRTKATMMFDISPHVFF 196
            + +++L Q E  +          I A++    +    +  T +   A   F        
Sbjct: 206 EKLVSVLVQNEFSDIECTEQILRHIEAREGKTRHSFRGIGHTAYLAYARKAF-FGKKSAK 264

Query: 197 PSPKVTSTVI 206
            S KV +  +
Sbjct: 265 KSRKVKTKTV 274


>gi|189054214|dbj|BAG36734.1| unnamed protein product [Homo sapiens]
          Length = 338

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS--QHPNRLE 98
           + GS     ++E+G G G ++  LL  L   +VI ++K +    +  + +   +  +R+ 
Sbjct: 154 AVGSPGSPLILEVGCGSGAISPSLLSQLPQSRVIAVDKREAAISLTHENAQRPRLQDRIW 213

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           II  D                 I++N PY
Sbjct: 214 IIHLDMTSERSWTHLPWGPMDLIVSNPPY 242


>gi|333023941|ref|ZP_08452005.1| PlaM2 [Streptomyces sp. Tu6071]
 gi|81250702|gb|ABB69747.1| PlaM2 [Streptomyces sp. Tu6071]
 gi|332743793|gb|EGJ74234.1| PlaM2 [Streptomyces sp. Tu6071]
          Length = 281

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
            +L +I  +     G+ V+++G G G L +     G   V+ +E D +     +
Sbjct: 49 EGLLHRIVGA---RTGLDVLDVGCGTGILARQFQAAGC-TVLGVEPDPRMAGFAR 99


>gi|288919672|ref|ZP_06414000.1| Methyltransferase type 12 [Frankia sp. EUN1f]
 gi|288348961|gb|EFC83210.1| Methyltransferase type 12 [Frankia sp. EUN1f]
          Length = 283

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 18/99 (18%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDL-------NILKKIAESSGSLDGITVIEI-- 54
            N  H  + +   +    ++Y       D         ++++I  +S   D + V++I  
Sbjct: 13  GNAPHQARRVAESFGADAERY-------DRTRPTYPDALVERIVAASPGRDVVDVLDILD 65

Query: 55  -GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            G G G   +     G R V+ +E D +     +   + 
Sbjct: 66  VGCGTGIEARQFQAAGCR-VLGVEPDPRMARFARRRGTD 103


>gi|284009100|emb|CBA76089.1| protein-L-isoaspartate O-methyltransferase [Arsenophonus nasoniae]
          Length = 203

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             I+ ++ E         V+EIG G G  T +L  L AR V  +E+
Sbjct: 56  PYIVARMTELLALSPTDHVLEIGTGSGYQTAILAHLVAR-VFSVER 100


>gi|207744117|ref|YP_002260509.1| protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum
           IPO1609]
 gi|206595521|emb|CAQ62448.1| protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum
           IPO1609]
          Length = 216

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ +         V+E+GAG G +  +L   G R V  ++   +     +D  ++
Sbjct: 63  PRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRG-RHVTTVDIAPELVAFARDNLAR 121

Query: 93  HPNRLEIIQDDA 104
           +     +   D 
Sbjct: 122 NG----VTNADV 129


>gi|167903898|ref|ZP_02491103.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia pseudomallei
           NCTC 13177]
          Length = 283

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 101 DAIFGRRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIR 160

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V  +                    +    +    D W         L Q   
Sbjct: 161 IIQHDAVEVLAQMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 205

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A      Y   +       +
Sbjct: 206 VAQLAAHLKPGAYLHCATDWQNYAE 230


>gi|50954064|ref|YP_061352.1| ubiquinone/menaquinone biosynthesis methyltransferase [Leifsonia
           xyli subsp. xyli str. CTCB07]
 gi|50950546|gb|AAT88247.1| ubiquinone/menaquinone biosynthesis methyltransferase [Leifsonia
           xyli subsp. xyli str. CTCB07]
          Length = 365

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            + G L G T+++I AG G  +  L   GAR V+  +       + +   S +P  +   
Sbjct: 46  RAVGPLAGETILDIAAGTGTSSASLARNGAR-VVAADFSPGMIEVGRRRQSGNP-FVTFQ 103

Query: 101 QDDALKVDFEK 111
           Q DA  + F  
Sbjct: 104 QADATDLPFPD 114


>gi|77464322|ref|YP_353826.1| N-6 adenine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
 gi|77388740|gb|ABA79925.1| N-6 Adenine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
          Length = 253

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           A +  +  G +V+E+G G G  +  L       ++  +E    +  + ++ ++ +   LE
Sbjct: 36  AAAVPASAGQSVLELGCGAGVASLCLAARVPGLRLAGLELQPAYAALARENAAMNGVALE 95

Query: 99  IIQDD--ALKVDFEKFFNISSPIRIIANLPYN 128
           +++ D  A+     + F+      +IAN PY 
Sbjct: 96  VVEGDLSAMPAALRQSFD-----HVIANPPYY 122


>gi|18312488|ref|NP_559155.1| hypothetical protein PAE1224 [Pyrobaculum aerophilum str. IM2]
 gi|18159949|gb|AAL63337.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 163

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
          G + +++GAG GN T+ LL  G R V  ++ D      +K +  + 
Sbjct: 15 GESALDVGAGFGNTTRYLLARGLR-VCAVDIDPGAVAYIKSLFKEF 59


>gi|320161904|ref|YP_004175129.1| ribosomal protein L11 methyltransferase [Anaerolinea thermophila
           UNI-1]
 gi|319995758|dbj|BAJ64529.1| ribosomal protein L11 methyltransferase [Anaerolinea thermophila
           UNI-1]
          Length = 308

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
            + G  VI++G G G L+   L LGA   + ++ DQ      ++ +  +    RLE+   
Sbjct: 162 VIPGKPVIDVGCGSGILSIGALKLGASHALGVDIDQASVISTRENAEANGVLERLEVGLG 221

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
              ++    F    +P+ +      NI   ++     A 
Sbjct: 222 SVSEILAGNFSLTHAPLVLA-----NILAPVIIRLFDAG 255


>gi|253565583|ref|ZP_04843038.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945862|gb|EES86269.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 237

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
            +++IG G G +  ML    +  VI +E D        +  ++ P  +R+E++  D    
Sbjct: 40  RILDIGTGTGLVALMLAQRCSASVIALEIDGTAAQQAAENITRSPWGSRIEVVCQDFRLY 99

Query: 108 DFEKFFNISSPIRIIANLPY 127
             +   N      I++N PY
Sbjct: 100 SNKN--NSLKYDTIVSNPPY 117


>gi|183600721|ref|ZP_02962214.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827]
 gi|188019701|gb|EDU57741.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827]
          Length = 428

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLE 98
           AE     +  T++++ A PG  T  +L L  +  V+ ++ D+     +K+   +   +  
Sbjct: 239 AELLEPQNHETILDLCAAPGGKTTHILELAPKAHVVAVDIDEHRLKRVKENLQRLQQQAA 298

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADT 142
           +IQ D  K   E++ N     RI+ + P +    +       W+  D+
Sbjct: 299 VIQGDGTK--PEEWANGQLFDRILLDAPCSATGVIRRHPDIKWLRRDS 344


>gi|154174707|ref|YP_001409203.1| protein-L-isoaspartate O-methyltransferase [Campylobacter curvus
           525.92]
 gi|112803519|gb|EAU00863.1| protein-L-isoaspartate O-methyltransferase [Campylobacter curvus
           525.92]
          Length = 211

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIV 75
           YK+  +  +G  ++     + K+  +     G   V+EIG G G     +L   A +V  
Sbjct: 46  YKLDAQPILGNQWISSPLTVAKMTLALECDKGIDNVLEIGCGSGY-QAAILGKLAHRVFS 104

Query: 76  IEKDQQFFPILKDISSQHPNR-LEIIQDD 103
           +E+ ++     K        R + +  DD
Sbjct: 105 VERIEKLATEAKKRFEALKIRNVHVRYDD 133


>gi|60681874|ref|YP_212018.1| hypothetical protein BF2394 [Bacteroides fragilis NCTC 9343]
 gi|81315061|sp|Q5LCS1|TRMN6_BACFN RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|60493308|emb|CAH08092.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 237

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
            +++IG G G +  ML    +  VI +E D        +  ++ P  +R+E++  D    
Sbjct: 40  RILDIGTGTGLVALMLAQRCSASVIALEIDGTAAQQAAENITRSPWGSRIEVVCQDFRLY 99

Query: 108 DFEKFFNISSPIRIIANLPY 127
             +   N      I++N PY
Sbjct: 100 SNKN--NSLKYDTIVSNPPY 117


>gi|15639455|ref|NP_218905.1| hypothetical protein TP0464 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025696|ref|YP_001933468.1| hypothetical protein TPASS_0464 [Treponema pallidum subsp. pallidum
           SS14]
 gi|14194922|sp|O83477|TRMB_TREPA RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|226695605|sp|B2S360|TRMB_TREPS RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|3322748|gb|AAC65448.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018271|gb|ACD70889.1| hypothetical protein TPASS_0464 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059849|gb|ADD72584.1| tRNA (guanine-N(7)-)-methyltransferase [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 250

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKDISSQHPNRLEIIQDDALKV 107
           V+EIG G G+ T  +         + IE        +L+ I ++  + L II+ DAL V
Sbjct: 84  VVEIGFGMGSATAAIAARNPHLSYLGIEVYRAGIGRLLRKIEAERLHNLRIIEHDALDV 142


>gi|328948779|ref|YP_004366116.1| methyltransferase type 11 [Treponema succinifaciens DSM 2489]
 gi|328449103|gb|AEB14819.1| Methyltransferase type 11 [Treponema succinifaciens DSM 2489]
          Length = 141

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRQSQYAKQI 115

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 116 EFCVADA 122


>gi|322373765|ref|ZP_08048300.1| ribosomal protein L11 methyltransferase [Streptococcus sp. C150]
 gi|321277137|gb|EFX54207.1| ribosomal protein L11 methyltransferase [Streptococcus sp. C150]
          Length = 317

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TVI++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDDVAVRVAQENIDMNPGMENIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|312220844|emb|CBY00785.1| hypothetical protein [Leptosphaeria maculans]
          Length = 431

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 86/270 (31%), Gaps = 45/270 (16%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPIL---KDIS 90
            K+       L G  V+++  G G LT +       A +V+ I+       I    ++  
Sbjct: 30  TKRFMTYLDVLPGQHVLDLACGTGLLTFLEADAVGSAGQVVGIDVTPGMLAIATRKQEQV 89

Query: 91  SQHPNRLEIIQDDALKVDF-----EKFFNISSPIRIIANLPYNIGTRL-LFNWI------ 138
                 ++ I+ D L++D      ++ F++ +    +  LP  I   +  F ++      
Sbjct: 90  GDKYANVQFIEGDILRLDRVEELKDRLFDVITVASALVLLPDPITALVHWFKYLKPGGVI 149

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL-SVLTGWR----TKATMMFDISPH 193
           +AD   P      ++ ++           +  + R  S L         +   +  +   
Sbjct: 150 AADATHPRNLVSGMVLERTARRLELPIPYNRSWSRTESTLKQKFESAGFQVEKLVTVENQ 209

Query: 194 VFFPSPKVTSTVIHFIPHLNPIPCCLES--LKKITQEAFGK---RRKTLRQSLKRLGGEN 248
             +                      +E+  LK +T+ AF     RRK      + +  E 
Sbjct: 210 AGYGR--------RVHDLERWDDFFVENVILKDVTR-AFANNDIRRK-----AQGIYKEE 255

Query: 249 LLHQAGIETNLRAENLSIEDFCRITNILTD 278
              +  ++     E +    F  +     D
Sbjct: 256 W-EKLAVDGK--VEEID-AVFLAVARKPAD 281


>gi|332652414|ref|ZP_08418159.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
 gi|332517560|gb|EGJ47163.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
          Length = 243

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRQSQYAKQI 115

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 116 EFCVADA 122


>gi|228477939|ref|ZP_04062552.1| ribosomal protein L11 methyltransferase [Streptococcus salivarius
           SK126]
 gi|228250332|gb|EEK09577.1| ribosomal protein L11 methyltransferase [Streptococcus salivarius
           SK126]
          Length = 317

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TVI++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDDVAVRVAQENIDMNPGMENIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|237809742|ref|YP_002894182.1| Spermine synthase [Tolumonas auensis DSM 9187]
 gi|237502003|gb|ACQ94596.1| Spermine synthase [Tolumonas auensis DSM 9187]
          Length = 292

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 54  IGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDDALK 106
           IG G G   + LL   G  KV+V E D     I ++        + H  RLE++  D LK
Sbjct: 90  IGGGDGGSARQLLKYPGIEKVVVCELDAGVVAIAEEYFGKVHQGAFHDPRLELVIADGLK 149

Query: 107 V 107
            
Sbjct: 150 Y 150


>gi|197286084|ref|YP_002151956.1| protein-L-isoaspartate O-methyltransferase [Proteus mirabilis
           HI4320]
 gi|227356594|ref|ZP_03840981.1| protein-L-isoaspartate O-methyltransferase [Proteus mirabilis ATCC
           29906]
 gi|238690091|sp|B4F223|PIMT_PROMH RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|194683571|emb|CAR44444.1| protein-L-isoaspartate O-methyltransferase [Proteus mirabilis
           HI4320]
 gi|227163350|gb|EEI48277.1| protein-L-isoaspartate O-methyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 208

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+          +V+EIG G G  T +L  L    V  +E+      IL+  + +
Sbjct: 61  PYIVAKMTSLLELQATDSVLEIGTGSGYQTAVLANL-VHHVSSVER----IKILQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +    P    I+      +  RLL   
Sbjct: 116 RFKHLDLHNISTRHGDGWEGWVSKGPFNAIIVTACATEVPQRLLMQL 162


>gi|188577224|ref|YP_001914153.1| cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|188521676|gb|ACD59621.1| cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 356

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +     GA    V     Q   IL+    +  + +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERHPGASITAVSNSRPQRAHILEQCRVRGLSNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQK 156
             D  AL +    F  + S         Y      + NW++     +   +    L +  
Sbjct: 186 TADVNALALPPGSFDRVVSVEMFEHMRNYRELLARVGNWMAPGGKLFVHIFCHRDLAYPF 245

Query: 157 EVG 159
           EV 
Sbjct: 246 EVA 248


>gi|163795709|ref|ZP_02189674.1| putative NDP-hexose methyltransferase protein [alpha
           proteobacterium BAL199]
 gi|159179005|gb|EDP63540.1| putative NDP-hexose methyltransferase protein [alpha
           proteobacterium BAL199]
          Length = 390

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G  ++E+G G G+L ++L  LGA   +V   D+     L+ +     +R+ +I D
Sbjct: 100 GKRILEVGGGTGSLARLLADLGADVTVVEPNDE-----LQSLLGDQADRIRVIND 149


>gi|145588450|ref|YP_001155047.1| tRNA (guanine-N(7)-)-methyltransferase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046856|gb|ABP33483.1| tRNA (guanine-N(7)-)-methyltransferase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 271

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 23/191 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRL 97
            ++        ++EIG G G  T  +  L +    + IE        +LK I       L
Sbjct: 54  VDAFAGSTKPKILEIGFGMGETTAKIAALRSEDDFLAIEVHPPGVGALLKLIGENQLTNL 113

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            +I+ DA++V                  P ++      +   AD W         L Q E
Sbjct: 114 RLIRHDAVEVLENMIA------------PNSLDG---IHIYFADPWHKKRHHKRRLIQAE 158

Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDI---SPHVFFPSPKVTSTVIHFIPHLNP 214
             + + ++  S  Y  L+       +  M+  +          + KV   V  F P    
Sbjct: 159 FVKLLVSRLKSGGYLHLATDWHNYAE-QMLLVLNAEPTLQNTSAEKVK--VETFTPEDIA 215

Query: 215 IPCCLESLKKI 225
                + LK+ 
Sbjct: 216 PEGSEKDLKEF 226


>gi|58581534|ref|YP_200550.1| hypothetical protein XOO1911 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426128|gb|AAW75165.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 356

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +     GA    V     Q   IL+    +  + +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERHPGASITAVSNSRPQRAHILEQCRVRGLSNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFWESLTLLFQK 156
             D  AL +    F  + S         Y      + NW++     +   +    L +  
Sbjct: 186 TADVNALALPPGSFDRVVSVEMFEHMRNYRELLARVGNWMAPGGKLFVHIFCHRDLAYPF 245

Query: 157 EVG 159
           EV 
Sbjct: 246 EVA 248


>gi|82470773|gb|ABB77424.1| unknown protein [Clostridiaceae bacterium K10]
          Length = 246

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRQSQYAKQI 115

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 116 EFCVADA 122


>gi|87118416|ref|ZP_01074315.1| possible methyltransferase [Marinomonas sp. MED121]
 gi|86166050|gb|EAQ67316.1| possible methyltransferase [Marinomonas sp. MED121]
          Length = 209

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 14/124 (11%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                +++E+G G G+ T + L+  A      +  ++   I         N++E I  D 
Sbjct: 37  IRPESSILELGCGTGS-TALKLSSKAYSYTAYDFSEEMIKIANRRLDNKKNKVEFILKDI 95

Query: 105 ----LKVDFEKFFNISSPIRIIANLPYNIGTR---------LLFNWISADTWPPFWESLT 151
               L           S + +I N    + +          ++ N I     P  +++L 
Sbjct: 96  ETLSLPYRHYDIVMAHSVLHLIENAEDVLESMLNAVNYKGYIVLNLILLKDIPFPFKALL 155

Query: 152 LLFQ 155
              Q
Sbjct: 156 SFAQ 159


>gi|310641418|ref|YP_003946176.1| methyltransferase type 12 [Paenibacillus polymyxa SC2]
 gi|309246368|gb|ADO55935.1| Methyltransferase type 12 [Paenibacillus polymyxa SC2]
          Length = 702

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 29  FLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPIL 86
           +L D+N            + G  +++IG G G L  ++       K + ++        L
Sbjct: 416 YLTDMNQTADFKRVILDYVTGTRILDIGPGGGVLLDLIEQERPDSKPLGLDISVNVIEAL 475

Query: 87  KDISSQHPNRLEIIQDDALKVD 108
           K        R ++I+ DAL+++
Sbjct: 476 KRKKQLEHRRWDVIKGDALRLE 497


>gi|308064266|gb|ADO06153.1| hypothetical protein HPSAT_07255 [Helicobacter pylori Sat464]
          Length = 238

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             +   +++IG+G G L  +         V ++EKD +     +  + + PN  ++ + D
Sbjct: 32  IKNSDAILDIGSGCGVLGLLCARDNPLASVHLVEKDGKMAFCSQKNALKFPNA-QVFESD 90

Query: 104 ALKVDFEKFFNISSPIRIIANLPYN 128
            L       ++      I+ N P+ 
Sbjct: 91  FLDFKPPILYD-----AIVCNPPFY 110


>gi|302335032|ref|YP_003800239.1| Methyltransferase type 11 [Olsenella uli DSM 7084]
 gi|301318872|gb|ADK67359.1| Methyltransferase type 11 [Olsenella uli DSM 7084]
          Length = 215

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              +    G   +++G G G L ++L  +  R V+ +E D       +  + +      +
Sbjct: 30  VSDAALRGG-VALDVGCGDGALLELLAGVC-RHVVGVEADP---ATARTAAGRVAGSGTV 84

Query: 100 IQDDALKVDF--EKFFNISSPIRIIANLP 126
           I  D +       + F+  + +  + ++P
Sbjct: 85  ICGDFMAAQDFAPEEFDTITCVACLHHMP 113


>gi|262037579|ref|ZP_06011035.1| ribosomal protein L11 methyltransferase [Leptotrichia goodfellowii
           F0264]
 gi|261748401|gb|EEY35784.1| ribosomal protein L11 methyltransferase [Leptotrichia goodfellowii
           F0264]
          Length = 310

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK 106
             +++IG G G L  +   LG  KV  I+ D++   ++K+  +++      E+I  + + 
Sbjct: 171 DKLLDIGCGSGILMLIGKKLGINKVTGIDIDEKVGEVVKENFAKNDIHENFEVIIGNLVN 230

Query: 107 VDFEKF 112
              EK+
Sbjct: 231 DINEKY 236


>gi|225174828|ref|ZP_03728825.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225169468|gb|EEG78265.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 199

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEII 100
           +      TV ++GAG G+LT +  L     +V  +EK+     ++    ++     +E+I
Sbjct: 37  ARLAPEQTVWDVGAGTGSLTVEAALFTPGGRVYAVEKNADGVELIHKNCAKFGVEHVEVI 96

Query: 101 QDDALKVDFEKFFNISSPIRII 122
              A          +  P R+ 
Sbjct: 97  SGTA----PAALAGLPRPHRVF 114


>gi|212532263|ref|XP_002146288.1| polyketide synthase, putative [Penicillium marneffei ATCC 18224]
 gi|210071652|gb|EEA25741.1| polyketide synthase, putative [Penicillium marneffei ATCC 18224]
 gi|296239561|gb|ADH01666.1| putative polyketide synthase PKS6 [Penicillium marneffei]
          Length = 2604

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 47   DGITVIEIGAGPGNLTQMLL--------TLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
              +T++E+GAG G+ T  +L             K    +    FF   +    +H  R++
Sbjct: 1497 PNMTILEVGAGTGSFTDHILNALSGDDGARNFAKYYFTDISPAFFERAQKQFEKHKRRMD 1556

Query: 99   IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                D  K   E+ F   +   I+A+   ++   L
Sbjct: 1557 FTILDIEKDPVEQGFEQGAFDMIVASNVLHVTADL 1591


>gi|15920572|ref|NP_376241.1| hypothetical protein ST0370 [Sulfolobus tokodaii str. 7]
 gi|15621355|dbj|BAB65350.1| 257aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 257

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISS-- 91
           +  +  SSG   G TVIE G G G LT  L        KVI  +  Q    I K      
Sbjct: 83  IAYMIYSSGIKPGDTVIEAGTGSGFLTISLAHYLGDNGKVITYDIRQDMQEIAKKNVEFL 142

Query: 92  QHPNRLEIIQDDALK-VDFEK----FFNISSPIRIIA 123
              NR+     D  +  D       F ++  P  ++ 
Sbjct: 143 GFSNRVIFKLKDVREGFDETNVDAIFLDMPDPWNVVK 179


>gi|323474149|gb|ADX84755.1| Methyltransferase type 11 [Sulfolobus islandicus REY15A]
          Length = 189

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +  TV+++G GPG  T +L  +  + V  ++ D++    LK+   +
Sbjct: 39 LKEDYTVVDLGCGPGFFTTILARI-VKTVYAVDPDERAIRRLKEKVQK 85


>gi|313228048|emb|CBY23198.1| unnamed protein product [Oikopleura dioica]
          Length = 666

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH 93
            +KKI           V+ IG G G LT  L        +  +E D     +   +    
Sbjct: 472 TVKKI-------QEPKVLIIGLGGGCLTNYLDVRYPDVSLTSVEIDPDMVKV-ARVHFNL 523

Query: 94  PNRLEIIQDDALKVDFEK 111
             R +++  D L    EK
Sbjct: 524 SERCQVVVGDGLNFLEEK 541


>gi|311694664|gb|ADP97537.1| cyclopropane-fatty-acyl-phospholipid synthase [marine bacterium
           HP15]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L  I        G  VIEIG G G             V      ++   + K+   +   
Sbjct: 186 LDTICRKLDLQPGDKVIEIGTGWGGFAIHAAKHYGCHVTTTTISREQLELAKERVQKEGL 245

Query: 94  PNRLEIIQDD 103
            +++ ++ DD
Sbjct: 246 EDQITLLFDD 255


>gi|298506365|gb|ADI85088.1| cyclopropane-fatty-acyl-phospholipid synthase [Geobacter
           sulfurreducens KN400]
          Length = 421

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
            +I  +      + ++EIG G G            +V      ++ F +  +    +   
Sbjct: 186 DRICRALHLRPDMELLEIGTGWGGFAIHAADHYGCRVTTTTISRRQFSLAAERIREAGLD 245

Query: 95  NRLEIIQDD 103
           +R+ ++Q D
Sbjct: 246 DRITLLQRD 254


>gi|260222880|emb|CBA32889.1| tRNA (guanine-N(7)-)-methyltransferase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 262

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 16/147 (10%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRL 97
           AE+        V+EIG G G  T  + LTL     +  E  +     +LK I   +   +
Sbjct: 75  AEAPNEAKRPVVLEIGFGMGEATAQIALTLPGTNFLCCEVHEPGVGALLKRIGEHNIPNI 134

Query: 98  EIIQDDALKV----------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            I   DA++V          +    F      +   N    I + L+   ++A   P  +
Sbjct: 135 RICNHDAVEVIDHMLPLASLNGVHIFFPDPWHKTKHNKRRLIQSPLVAK-LAARLKPGGY 193

Query: 148 ESLTLLFQ---KEVGERITAQKNSPHY 171
                 +Q   +++ E ++A+    + 
Sbjct: 194 LHAATDWQPYAEQILEVLSAEPKLKNR 220


>gi|258650473|ref|YP_003199629.1| cyclopropane-fatty-acyl-phospholipid synthase [Nakamurella
           multipartita DSM 44233]
 gi|258553698|gb|ACV76640.1| Cyclopropane-fatty-acyl-phospholipid synthase [Nakamurella
           multipartita DSM 44233]
          Length = 442

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI---EKDQQFFPILKDIS-S 91
           +  I + +    G+ V+EIG+G G L           V  +   E  ++    L+ I+ +
Sbjct: 210 IDAILDLARMRPGMRVLEIGSGWGALAMRAARTRDVHVTTLTLSEAQRELA--LRRIADA 267

Query: 92  QHPNRLEIIQDD 103
               R++++ +D
Sbjct: 268 GLSQRIDVLLED 279


>gi|294899861|ref|XP_002776780.1| tRNA methyltransferase complex GCD14 subunit domain containing
           protein [Perkinsus marinus ATCC 50983]
 gi|239883981|gb|EER08596.1| tRNA methyltransferase complex GCD14 subunit domain containing
           protein [Perkinsus marinus ATCC 50983]
          Length = 331

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQH 93
           +  I        G  V+E G G G+L+  L+          + D   +     +   ++ 
Sbjct: 95  ISMILTGLDIRPGKKVVEAGTGSGSLSTSLIQALRHHGSDRDLDGHLYTFEYHEPRFAEA 154

Query: 94  PNRLEII-QDDALKVDFEKFFNISSPIRIIAN 124
            +  E     D + +      +   P  ++  
Sbjct: 155 KSDFERYGFSDIVTIQHRDVIHDGLPEELVGM 186


>gi|227357580|ref|ZP_03841933.1| methyltransferase [Proteus mirabilis ATCC 29906]
 gi|227162290|gb|EEI47294.1| methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 274

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  ++ K  E     D  T++++G GPG+++  +     +K+I I+       + K  ++
Sbjct: 46  DPYLI-KFREMMDFSDAETLLDVGCGPGSISIHVAD-KFKKIIGIDYSTGMLTVAKRRAA 103

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           Q      I   D L   +E  ++   P  I
Sbjct: 104 QAG----IHHADFLHYSWEDNWDALPPCDI 129


>gi|227114062|ref|ZP_03827718.1| protein-L-isoaspartate O-methyltransferase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 208

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L  R V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLSLTPESRVLEIGTGSGYQTAILAHL-VRHVCSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I   L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWASRGPFDAIIVTAAPPEIPRALMEQL 162


>gi|150399663|ref|YP_001323430.1| methyltransferase small [Methanococcus vannielii SB]
 gi|150012366|gb|ABR54818.1| methyltransferase small [Methanococcus vannielii SB]
          Length = 260

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 9/131 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
              G TV ++G G G L  M+    A+KV  +E D       K  I++ +   + +I+ D
Sbjct: 32  VKKGDTVFDLGTGSGIL-AMVAAKDAKKVYAVELDPITTEYTKRNITTNNFENIIVIESD 90

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV---GE 160
           A        F   + + I   L   + T      +++       +   ++  KEV    +
Sbjct: 91  ATYYP----FKEKADLVIAELLDTGLITEPQVPVLNSIIKRGLLKEGGIIIPKEVYNTAQ 146

Query: 161 RITAQKNSPHY 171
            + A+ N  +Y
Sbjct: 147 IVAAKMNHIYY 157


>gi|24414824|emb|CAD55637.1| putative Mg-protoporphyrin IX methyl transferase [Synechococcus
           elongatus PCC 7942]
          Length = 239

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           E+ G+L   +  + G G G+L+  L   GA+ V   +   +     ++ +SQ PN
Sbjct: 54  EADGNLSDRSFCDAGCGVGSLSLPLAQRGAQAVYASDISAKMVEEARERASQIPN 108


>gi|259486894|tpe|CBF85124.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 279

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + + + +        +V++IG G G  T++ L     KV+ ++         +     
Sbjct: 28  PKLTQTLLQYLDPQPSDSVLDIGCGDGKFTELFLPY-VSKVLGVDSSPAMIEAARKGYGS 86

Query: 93  HPNRLEIIQDDALKVD 108
                +++    L+ +
Sbjct: 87  EKAEFQVLDCCFLEQN 102


>gi|254384770|ref|ZP_05000108.1| O-methyltransferase [Streptomyces sp. Mg1]
 gi|194343653|gb|EDX24619.1| O-methyltransferase [Streptomyces sp. Mg1]
          Length = 325

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            +++ K+  +    DG  V+EIG G G    +L    G   V  ++ +++     +   +
Sbjct: 99  PSLMAKMLNALDVRDGHRVLEIGTGTGYNAALLCHRLGDDLVTTVDLEEEITESARTHLA 158

Query: 92  QHPNRLEIIQDD 103
               R  ++  D
Sbjct: 159 ALGYRPTVVTGD 170


>gi|58039191|ref|YP_191155.1| biotin synthesis protein BioC [Gluconobacter oxydans 621H]
 gi|58001605|gb|AAW60499.1| Biotin synthesis protein BioC [Gluconobacter oxydans 621H]
          Length = 268

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 35/164 (21%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95
            +I  ++   D  +++E G G G LT  L     +  ++  +         +   S+   
Sbjct: 42  DRIRSTAA--DPTSILEFGCGTGFLTAQLAAHFPQANLLATDLAPGMIARARQRLSEETI 99

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT----------WPP 145
           R  ++          +  +IS P  +       I + L   W S  +           P 
Sbjct: 100 RFHVMDA--------EHPDISGPFDL-------IASSLCLQWFSNRSDGLRRLCDLLAPQ 144

Query: 146 FWESLTLLFQ------KEVGERITAQKNSPHY-GRLSVLTGWRT 182
               +T L Q      K+      A    P Y    +V + WR 
Sbjct: 145 GRLMVTTLLQSSLGEWKQACLAEGAPCGVPDYPSAQTVQSEWRA 188


>gi|67522218|ref|XP_659170.1| hypothetical protein AN1566.2 [Aspergillus nidulans FGSC A4]
 gi|40745117|gb|EAA64273.1| hypothetical protein AN1566.2 [Aspergillus nidulans FGSC A4]
          Length = 121

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + + + +        +V++IG G G  T++ L     KV+ ++         +     
Sbjct: 28  PKLTQTLLQYLDPQPSDSVLDIGCGDGKFTELFLPY-VSKVLGVDSSPAMIEAARKGYGS 86

Query: 93  HPNRLEIIQDDALKVD 108
                +++    L+ +
Sbjct: 87  EKAEFQVLDCCFLEQN 102


>gi|294084149|ref|YP_003550907.1| cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663722|gb|ADE38823.1| Cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 396

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +K+ E +       V+EIG G G   + +++    +V  I  
Sbjct: 170 QKLVEMADIQPDDHVLEIGCGWGGFAKYVISTVGARVTGITI 211


>gi|296807276|ref|XP_002844193.1| methyltransferase type 11 [Arthroderma otae CBS 113480]
 gi|238843676|gb|EEQ33338.1| methyltransferase type 11 [Arthroderma otae CBS 113480]
          Length = 276

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 11/109 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++        G  V+++G G G  T   ++  A  V+ ++         + +  +
Sbjct: 24  PRLTDRVLRHLNPQPGDKVLDVGCGDGQFTSKFVSAVA-AVLGVDSSAAMVESARRLHHR 82

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                     D   VD            I+      + +    +WI  D
Sbjct: 83  SS------HADFRVVDCRYLGQTD----IVDGSWDKVVSNAALHWILRD 121


>gi|238015004|gb|ACR38537.1| unknown [Zea mays]
          Length = 263

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 24  YMGQNFLLDLNILKKIAE-----SS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           Y GQ  L   N+L+         ++        +G  V+++GAG G L+      GAR V
Sbjct: 153 YYGQ-LLHQQNMLQDFVRTGTYYAAVMENRSDFEGRVVVDVGAGSGILSLFAAQAGARHV 211

Query: 74  IVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNI 115
             +E   +     + + S +P+   R+ +I+    +V+  +  +I
Sbjct: 212 YAVEA-SEMAENAQRLMSGNPSLGQRITVIRGKVEEVELPEKADI 255


>gi|229156393|ref|ZP_04284487.1| hypothetical protein bcere0010_25810 [Bacillus cereus ATCC 4342]
 gi|228627070|gb|EEK83803.1| hypothetical protein bcere0010_25810 [Bacillus cereus ATCC 4342]
          Length = 247

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           N+L    + ++I E  G     T++E+GAG G   + +  L  +   V     +  P L 
Sbjct: 25  NWL--QEVAEEIQEQVG-YPFQTMLELGAGNGGFARAMSNLDVKMTTV-----ELVPELV 76

Query: 88  DISSQHP-NRLEIIQDDALKVDFEKFFNI 115
             + +H  + ++I   D  K++FE+ F++
Sbjct: 77  MFAKEHSTSDIDIHCADFYKINFEEKFDV 105


>gi|227327752|ref|ZP_03831776.1| protein-L-isoaspartate O-methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 208

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L  R V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLSLTPESRVLEIGTGSGYQTAILAHL-VRHVCSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I   L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWASRGPFDAIIVTAAPPEIPRALMEQL 162


>gi|212275848|ref|NP_001130830.1| hypothetical protein LOC100191934 [Zea mays]
 gi|194690226|gb|ACF79197.1| unknown [Zea mays]
          Length = 538

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 24  YMGQNFLLDLNILKKIAE-----SS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           Y GQ  L   N+L+         ++        +G  V+++GAG G L+      GAR V
Sbjct: 153 YYGQ-LLHQQNMLQDFVRTGTYYAAVMENRSDFEGRVVVDVGAGSGILSLFAAQAGARHV 211

Query: 74  IVIEKDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNI 115
             +E   +     + + S +P+   R+ +I+    +V+  +  +I
Sbjct: 212 YAVEA-SEMAENAQRLMSGNPSLGQRITVIRGKVEEVELPEKADI 255


>gi|229916344|ref|YP_002884990.1| ribosomal protein L11 methyltransferase [Exiguobacterium sp. AT1b]
 gi|259534532|sp|C4L423|PRMA_EXISA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|229467773|gb|ACQ69545.1| ribosomal protein L11 methyltransferase [Exiguobacterium sp. AT1b]
          Length = 312

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 40  AESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PN 95
            ++      +G  VI++G G G L+     LGA  V  ++ D       +     +    
Sbjct: 166 IQAIENYIREGDHVIDVGTGSGVLSIAAAKLGAASVKALDLDSVAVESARQNVETNGVGE 225

Query: 96  RLEIIQDDALK 106
            +++   D LK
Sbjct: 226 LVQVDTGDLLK 236


>gi|71906159|ref|YP_283746.1| methyltransferase small [Dechloromonas aromatica RCB]
 gi|71845780|gb|AAZ45276.1| Methyltransferase small [Dechloromonas aromatica RCB]
          Length = 384

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  IA +          +IG G G +  +L   G  +++  ++D +       ++    N
Sbjct: 194 VDLIASAPIPAGCDLAFDIGTGSGIIAAVLARRGVAQIVATDQDARA------LACAGEN 247

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             ++    A+++     F       ++ N P+
Sbjct: 248 IEQLGLAAAVRIVKADLFPEGKAPLVVCNPPW 279


>gi|47567628|ref|ZP_00238338.1| N-methyl-transferase-related protein [Bacillus cereus G9241]
 gi|47555605|gb|EAL13946.1| N-methyl-transferase-related protein [Bacillus cereus G9241]
          Length = 164

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           N+L    + ++I E  G     T++E+GAG G   + +  L  +   V     +  P L 
Sbjct: 25  NWL--QEVAEEIQEQVG-YPFQTMLELGAGNGGFARAMSNLDVKMTTV-----ELVPELV 76

Query: 88  DISSQHP-NRLEIIQDDALKVDFEKFFNI 115
             + +H  + ++I   D  K++FE+ F++
Sbjct: 77  MFAKEHSTSDIDIHCADFYKINFEEKFDV 105


>gi|327439568|dbj|BAK15933.1| predicted O-methyltransferase [Solibacillus silvestris StLB046]
          Length = 210

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 43  SGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99
               +  +++EIG   G +  +M   L    ++ IE+D       K+  ++    NR+++
Sbjct: 46  LRIQNPKSILEIGTAIGYSAIRMAQALPNCHIVTIERDVSRVQYAKEFIARSEVANRIQV 105

Query: 100 IQDDALKVDFEKF 112
           I+ DAL+VD    
Sbjct: 106 IEGDALEVDMGTL 118


>gi|315649712|ref|ZP_07902796.1| methyltransferase small [Paenibacillus vortex V453]
 gi|315274900|gb|EFU38276.1| methyltransferase small [Paenibacillus vortex V453]
          Length = 201

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 50/113 (44%), Gaps = 20/113 (17%)

Query: 22  KKYM-----GQ--NFLLDLNILKK---------IAESSGSLDGITVIEIGAGPG--NLTQ 63
           +K +     GQ  NF+ D  +  K         + ++       +V+++G G G   LT 
Sbjct: 17  RKELKTELRGQTFNFISDAGVFSKSGVDFGSKVLIDAMEFQQNASVLDVGCGYGPIGLTA 76

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
             + +    V +I+ + +   + K+ + ++  + + I++ D   V  ++ F++
Sbjct: 77  AKMVVDGH-VTMIDINSRAVELAKENARRNGISNVTILESDLFAVVKDQQFDV 128


>gi|312139713|ref|YP_004007049.1| sam dependent methyltransferase [Rhodococcus equi 103S]
 gi|311889052|emb|CBH48365.1| SAM dependent methyltransferase [Rhodococcus equi 103S]
          Length = 283

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL       +V   E  +         ++  
Sbjct: 93  AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPTGRVTSYEVREDHAEHAVRNVETF 152

Query: 90  SSQHPNRLEIIQDD 103
               P   ++   D
Sbjct: 153 FGGRPENWDLTIAD 166


>gi|325676837|ref|ZP_08156510.1| tRNA (adenine-N(1)-)-methyltransferase [Rhodococcus equi ATCC
           33707]
 gi|325552385|gb|EGD22074.1| tRNA (adenine-N(1)-)-methyltransferase [Rhodococcus equi ATCC
           33707]
          Length = 295

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL       +V   E  +         ++  
Sbjct: 105 AAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPTGRVTSYEVREDHAEHAVRNVETF 164

Query: 90  SSQHPNRLEIIQDD 103
               P   ++   D
Sbjct: 165 FGGRPENWDLTIAD 178


>gi|291451973|ref|ZP_06591363.1| methyltransferase type 11 [Streptomyces albus J1074]
 gi|291354922|gb|EFE81824.1| methyltransferase type 11 [Streptomyces albus J1074]
          Length = 311

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            +   DG++++++G G G LT       G + V  ++ D        +  +   +   ++
Sbjct: 113 HARVGDGLSLLDLGTGAGGLTAYACHRLGDQHVTSLDVDPYLVSAAGERLAAMGHHPRMV 172

Query: 101 QDDALKV 107
             DA + 
Sbjct: 173 TADATEY 179


>gi|242049048|ref|XP_002462268.1| hypothetical protein SORBIDRAFT_02g022770 [Sorghum bicolor]
 gi|241925645|gb|EER98789.1| hypothetical protein SORBIDRAFT_02g022770 [Sorghum bicolor]
          Length = 384

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
            +    V+++GAG G L+      GA+ V  IE   Q   + K+I     + + + +I+ 
Sbjct: 99  LIKDKVVLDVGAGTGILSLFCAKAGAKHVYAIEC-SQMADMAKEIVKSNGYSDVITVIKG 157


>gi|239980118|ref|ZP_04702642.1| hypothetical protein SalbJ_11803 [Streptomyces albus J1074]
          Length = 304

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            +   DG++++++G G G LT       G + V  ++ D        +  +   +   ++
Sbjct: 106 HARVGDGLSLLDLGTGAGGLTAYACHRLGDQHVTSLDVDPYLVSAAGERLAAMGHHPRMV 165

Query: 101 QDDALKV 107
             DA + 
Sbjct: 166 TADATEY 172


>gi|256831777|ref|YP_003160504.1| ubiquinone/menaquinone biosynthesis methyltransferase [Jonesia
           denitrificans DSM 20603]
 gi|256685308|gb|ACV08201.1| ubiquinone/menaquinone biosynthesis methyltransferase [Jonesia
           denitrificans DSM 20603]
          Length = 235

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 25/169 (14%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQ    D    +   ++  +  G  ++++ AG G  +      GAR VI  +      
Sbjct: 32  SLGQ----DRRWRRATVDAVNAQPGERILDLAAGTGTSSLPFDAAGAR-VIPCDFSTGML 86

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEK-----------FFNISSPIRIIANLPYNI--G 130
            + +      P     I  DA+K+ F               N++     +A +   +  G
Sbjct: 87  AVGRSRRPDLP----FIAGDAMKLPFADESFDAATISFGLRNVADTHAALAEILRVLRPG 142

Query: 131 TRLLFNWISADTWPPFWESLTLLFQK---EVGERITAQKNSPHYGRLSV 176
            RL+    S  TW P     +    K    V   IT+   S  Y   S+
Sbjct: 143 GRLVVCEFSTPTWGPMRTVYSEYLMKALPRVAGAITSDSGSYSYLAESI 191


>gi|163732141|ref|ZP_02139587.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och
          149]
 gi|161394439|gb|EDQ18762.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och
          149]
          Length = 330

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +L  I ++   + G   ++   G G  T+ LL  GA +VI +++D   F +  D +  
Sbjct: 15 PVLLSAILDAVAPVHGDW-LDGTFGAGGYTRGLLEAGADRVIAVDRDPLAFEMAADWADA 73

Query: 93 HPNRL 97
          +  RL
Sbjct: 74 YGARL 78


>gi|126437046|ref|YP_001072737.1| hypothetical protein Mjls_4476 [Mycobacterium sp. JLS]
 gi|126236846|gb|ABO00247.1| SAM-dependent methyltransferase [Mycobacterium sp. JLS]
          Length = 235

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L++I            ++IGAG G    +      R+VI +E   +   I +D   +  +
Sbjct: 73  LRRILPPDTVTPDDVFLDIGAGMGRAVLVAAGYPFRRVIGVELSTRLADIAQDNVERVKD 132

Query: 96  RLE-----IIQDDALKVDFEK 111
           RL      I+  DA+      
Sbjct: 133 RLRCKDIAIVNADAVNYKVPD 153


>gi|91227836|ref|ZP_01262009.1| protein-L-isoaspartate O-methyltransferase [Vibrio alginolyticus
           12G01]
 gi|269965237|ref|ZP_06179371.1| protein-L-isoaspartate O-methyltransferase [Vibrio alginolyticus
           40B]
 gi|91188346|gb|EAS74642.1| protein-L-isoaspartate O-methyltransferase [Vibrio alginolyticus
           12G01]
 gi|269830223|gb|EEZ84450.1| protein-L-isoaspartate O-methyltransferase [Vibrio alginolyticus
           40B]
          Length = 208

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E         V+EIG G G  T +L  +    V  +E+       L+  + +
Sbjct: 61  PYIVARMTELLELEPASRVLEIGTGSGYQTAVLAQI-VDHVYSVER----IKSLQWEAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D  + +    P   I
Sbjct: 116 RLKQLDIYNVSTKHADGWQGWEARGPFDAI 145


>gi|78059700|ref|YP_366275.1| cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia sp.
           383]
 gi|77964250|gb|ABB05631.1| Cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia sp.
           383]
          Length = 409

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 31/106 (29%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMG------------------QNFLLDLNILK--KIAES 42
           MN ++ S + I +HY +   ++ G                  Q  L D    K  +I ES
Sbjct: 126 MNTRAGSRRNIHAHYDLG-NRFYGLWLDDTWTYSSACFDGDEQRPLADAQAAKYQRIVES 184

Query: 43  SGSLDGITVIEIGAGPGNLT----------QMLLTLGARKVIVIEK 78
            G   G+ V+EIG G G               L   GA+ V+ +E+
Sbjct: 185 LGLRAGMHVLEIGCGWGGFAMHAARQGIRVHALTISGAQYVLAVER 230


>gi|46445793|ref|YP_007158.1| hypothetical protein pc0159 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399434|emb|CAF22883.1| hypothetical protein pc0159 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 392

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           L+++ +I         + V++IG+GPG  +   L  GAR+VI ++K+Q    +  D+  +
Sbjct: 88  LSVINEI-----PQTPVRVLDIGSGPGAFSFAALHHGAREVIALDKNQTALQLAADVCGR 142

Query: 93  HPNRLEIIQDDALKVD 108
           +   L I + D LK D
Sbjct: 143 YGYPLTIRRHD-LKND 157


>gi|154248646|ref|YP_001419604.1| cyclopropane-fatty-acyl-phospholipid synthase [Xanthobacter
           autotrophicus Py2]
 gi|154162731|gb|ABS69947.1| Cyclopropane-fatty-acyl-phospholipid synthase [Xanthobacter
           autotrophicus Py2]
          Length = 409

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + IA       G+ V EIG+G G L   +      +V  I    +     + ++      
Sbjct: 164 RHIAAKLKIAPGMRVAEIGSGWGGLAIYMAKECGAQVTAINVSPEQLAESRRLAEAAGVA 223

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANL 125
             I   D  +VD+         +  I  +
Sbjct: 224 GSI---DFREVDYRNLKGKFDRVVSIGMM 249


>gi|88703708|ref|ZP_01101424.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88702422|gb|EAQ99525.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 206

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           KI +         +I++G G   L   LL  G   V V++       + K+  S   +R+
Sbjct: 31  KIIQRLSLDRSAHIIDVGGGASTLVDDLLAQGYSDVSVLDLSAYALQVAKERLSDAAHRV 90

Query: 98  EIIQDDALKVDFEKF 112
           + I+ D  +V   + 
Sbjct: 91  QWIEGDITQVVLPEH 105


>gi|300788624|ref|YP_003768915.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Amycolatopsis mediterranei U32]
 gi|299798138|gb|ADJ48513.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Amycolatopsis mediterranei U32]
          Length = 391

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDIS 90
             ++  + E SG+ DG +V+EIG G G  T  LL   LG+  V  ++ +  +    +D  
Sbjct: 99  PAVVATMLEQSGATDGDSVLEIGTGTG-WTAALLSHRLGSESVTSVDVNPAYVDRARDRL 157

Query: 91  SQHPNRLEIIQDD 103
                   +   D
Sbjct: 158 DALDLAPTLAIAD 170


>gi|312139988|ref|YP_004007324.1| methyltransferase [Rhodococcus equi 103S]
 gi|325674537|ref|ZP_08154225.1| methyltransferase [Rhodococcus equi ATCC 33707]
 gi|311889327|emb|CBH48643.1| putative methyltransferase [Rhodococcus equi 103S]
 gi|325554797|gb|EGD24471.1| methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 242

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI--IQD 102
              G  V++IGAG G L+      G+R V  ++  ++   +L    +   N ++I  +  
Sbjct: 49  IEPGTRVLDIGAGTGYLSVSAALAGSRNVTAVDVAKR--ALLNTRLNATLNGVQIRAVHG 106

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D      E  F++     +++N PY
Sbjct: 107 DLTNPLGENNFDL-----VVSNPPY 126


>gi|282892096|ref|ZP_06300571.1| hypothetical protein pah_c207o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497991|gb|EFB40335.1| hypothetical protein pah_c207o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 271

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             + G  ++++G+G G L+     +GA+ V  I+ D +     K+        L  ++ D
Sbjct: 130 DRVHGQAILDVGSGSGVLSLAAAIMGAKIVWGIDIDPEAVEHAKENLL-----LNELEGD 184

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--ISADTWPPFWESLTLLFQKE 157
                 E   ++    + I  L   I +     W  + +    P    ++ + Q+E
Sbjct: 185 I-TFSIEPPTHVLQQQQNILVLMNMIASEQAVAWKSLKSVHHLPGEALISGILQEE 239


>gi|254422634|ref|ZP_05036352.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Synechococcus sp. PCC 7335]
 gi|196190123|gb|EDX85087.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Synechococcus sp. PCC 7335]
          Length = 287

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++ ++ + +G     +V+EIG GPG  T      G   +  +E       + +     
Sbjct: 46  DSLVDQVIQKAGLSPDSSVLEIGCGPGIATASFAARG-LAMQSVEPSAAACELARQACQA 104

Query: 93  HP 94
           +P
Sbjct: 105 YP 106


>gi|149177894|ref|ZP_01856492.1| N6-adenine-specific methylase [Planctomyces maris DSM 8797]
 gi|148843234|gb|EDL57599.1| N6-adenine-specific methylase [Planctomyces maris DSM 8797]
          Length = 201

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 56/187 (29%), Gaps = 39/187 (20%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
               V +I +G G+L    L+ GA  V+ IE+D +   +LK             +D  L 
Sbjct: 41  KDKRVADIYSGTGSLGLEALSRGAASVVFIEQDYKAHELLKRNVENIGA-----EDTTLC 95

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
                  +   P  +   +P        F+ I  D      + L              + 
Sbjct: 96  WKTNALLSSFRPKNVPDFVP--------FSLIFLDPPYKMIDDL--------------KP 133

Query: 167 NSPHY---GRLSVLTGWRTKATMMFDISPHVFFPSPKVT---------STVIHFIPHLNP 214
            S  Y    RLS          ++        F  P V          S  IHF+   + 
Sbjct: 134 GSRLYVSMERLSKENVSSADCHLLLRTPRDAEFECPPVWERYELLQKSSMDIHFMKKRDI 193

Query: 215 IPCCLES 221
            P   +S
Sbjct: 194 EPTEDQS 200


>gi|126650768|ref|ZP_01722984.1| Methyltransferase [Bacillus sp. B14905]
 gi|126592433|gb|EAZ86451.1| Methyltransferase [Bacillus sp. B14905]
          Length = 235

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 1/122 (0%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           N+ K+I ++   L    ++++G G G     L +  A  V  I+ +       +    + 
Sbjct: 27  NLSKEIMKNERILPASHILDVGCGTGQTAAFLASHYAAHVTGIDINPIMIEKARHRMKKG 86

Query: 94  PNRLEIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              + +IQ    +     + F+      ++A +      + +F  +         E    
Sbjct: 87  HLSVNVIQGSIEETTLPNEAFDFVLAESVLAFVNKQRALQEIFRLLKEGGRLIAIEFTVP 146

Query: 153 LF 154
           + 
Sbjct: 147 ML 148


>gi|152013351|sp|A2Y953|ANM42_ORYSI RecName: Full=Probable protein arginine N-methyltransferase 4.2
 gi|125554008|gb|EAY99613.1| hypothetical protein OsI_21591 [Oryza sativa Indica Group]
          Length = 382

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
            ++    G  V+++G G G L       GARKV  +E         ++++  +   + +E
Sbjct: 63  RNAHHFRGKVVLDVGTGSGILAIWSAQAGARKVYAVEA-TNMAEHARELARANDVADIVE 121

Query: 99  IIQD 102
           +IQ 
Sbjct: 122 VIQG 125


>gi|52081093|ref|YP_079884.1| ribosomal protein L11 methyltransferase [Bacillus licheniformis
           ATCC 14580]
 gi|52786472|ref|YP_092301.1| ribosomal protein L11 methyltransferase [Bacillus licheniformis
           ATCC 14580]
 gi|319644949|ref|ZP_07999182.1| ribosomal protein L11 methyltransferase [Bacillus sp. BT1B_CT2]
 gi|81825250|sp|Q65H56|PRMA_BACLD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|52004304|gb|AAU24246.1| Ribosomal protein L11 methyltransferase [Bacillus licheniformis
           ATCC 14580]
 gi|52348974|gb|AAU41608.1| YqeT [Bacillus licheniformis ATCC 14580]
 gi|317392758|gb|EFV73552.1| ribosomal protein L11 methyltransferase [Bacillus sp. BT1B_CT2]
          Length = 311

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQD 102
             +G +V+++G G G L+     L A++V   + D        L    ++  + +EI Q+
Sbjct: 173 VKEGDSVVDVGTGTGILSIASAMLRAKQVEGYDLDPVAVESARLNSKLNKVSDHIEIKQN 232

Query: 103 DALK 106
           + L 
Sbjct: 233 NLLD 236


>gi|115466346|ref|NP_001056772.1| Os06g0142800 [Oryza sativa Japonica Group]
 gi|75337470|sp|Q9SNQ2|ANM42_ORYSJ RecName: Full=Probable protein arginine N-methyltransferase 4.2
 gi|5803265|dbj|BAA83575.1| protein arginine N-methyltransferase protein -like [Oryza sativa
           Japonica Group]
 gi|113594812|dbj|BAF18686.1| Os06g0142800 [Oryza sativa Japonica Group]
 gi|125596017|gb|EAZ35797.1| hypothetical protein OsJ_20089 [Oryza sativa Japonica Group]
 gi|215678920|dbj|BAG96350.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215706911|dbj|BAG93371.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 380

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
            ++    G  V+++G G G L       GARKV  +E         ++++  +   + +E
Sbjct: 61  RNAHHFRGKVVLDVGTGSGILAIWSAQAGARKVYAVEA-TNMAEHARELARANDVADIVE 119

Query: 99  IIQD 102
           +IQ 
Sbjct: 120 VIQG 123


>gi|83858698|ref|ZP_00952220.1| Protein-L-isoaspartate carboxylmethyltransferase [Oceanicaulis
           alexandrii HTCC2633]
 gi|83853521|gb|EAP91373.1| Protein-L-isoaspartate carboxylmethyltransferase [Oceanicaulis
           alexandrii HTCC2633]
          Length = 218

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           F+L    L K+ +++       V+++  G G  T +L  +    V + +KD        D
Sbjct: 60  FMLTPRDLAKLIQAADIRRTDVVLDVACGRGYSTAVLARMAETVVGLEQKDLGLVEKATD 119

Query: 89  -ISSQHPNRLEIIQDD 103
            +++   +   +++ D
Sbjct: 120 ALNAIETDNAVVVEGD 135


>gi|114331873|ref|YP_748095.1| ribosomal protein L11 methyltransferase [Nitrosomonas eutropha C91]
 gi|122313396|sp|Q0AEV2|PRMA_NITEC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|114308887|gb|ABI60130.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Nitrosomonas eutropha C91]
          Length = 313

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDISSQHPNRLEIIQDD 103
              G +V++ G G G L    L LGA +V+ ++ D       L++  +   +  ++    
Sbjct: 162 LKPGDSVLDYGCGSGILAIAALKLGADRVMGVDIDPNAITASLENARNNLCDLDKLSFTT 221

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           AL          +    +   +   +   L+ 
Sbjct: 222 ALSFSGGGDPADTRQHPVFVVVANILANPLIM 253


>gi|333030549|ref|ZP_08458610.1| tRNA (adenine-N(6)-)-methyltransferase [Bacteroides coprosuis DSM
           18011]
 gi|332741146|gb|EGJ71628.1| tRNA (adenine-N(6)-)-methyltransferase [Bacteroides coprosuis DSM
           18011]
          Length = 235

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHP--NRL 97
            S+   +   ++++G G G +  ML       ++  +E D+      K+   + P  +R+
Sbjct: 31  ASAPVTNANFILDVGTGTGLIALMLAQRTVSAQIKALEIDEDAVIQAKENIERSPWKDRI 90

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           E+IQ D    +  + +++     I++N PY + +
Sbjct: 91  EVIQSDFNLYEPNEKYDL-----IVSNPPYFVDS 119


>gi|310795165|gb|EFQ30626.1| cyclopropane-fatty-acyl-phospholipid synthase [Glomerella
           graminicola M1.001]
          Length = 479

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           L +  + +       V+EIG G G+     +     +V  +   ++   + ++   ++  
Sbjct: 223 LHRFIDGARIKPSDHVLEIGTGWGSFAIEAVRKTGCRVTSLTLSKEQKALAEERINAAGF 282

Query: 94  PNRLEIIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRL--LFNWISADTWPPFWES 149
            +R+++   D  AL+     F  I S   + A     +GT    +   +  +     ++ 
Sbjct: 283 SDRIDVRLTDYRALETPERPFDKIVSIEMLEAVGQEFLGTYFACIDRLLKKNGGIAVFQC 342

Query: 150 LTL 152
           +T+
Sbjct: 343 ITM 345


>gi|299134504|ref|ZP_07027697.1| Cyclopropane-fatty-acyl-phospholipid synthase [Afipia sp. 1NLS2]
 gi|298591251|gb|EFI51453.1| Cyclopropane-fatty-acyl-phospholipid synthase [Afipia sp. 1NLS2]
          Length = 397

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           L +I +      G  ++EIG G G L   L   GAR   V
Sbjct: 171 LSRIEKLLDLRGGEDILEIGCGWGALAVRLARAGARVTAV 210


>gi|302497644|ref|XP_003010822.1| hybrid PKS-NRPS enzyme, putative [Arthroderma benhamiae CBS 112371]
 gi|291174366|gb|EFE30182.1| hybrid PKS-NRPS enzyme, putative [Arthroderma benhamiae CBS 112371]
          Length = 3945

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 9/138 (6%)

Query: 40   AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEKDQQFFPILKDISSQHPNR 96
            A+ +     + +IEIGAG G  T+M+L             +    FF   ++  SQ+ +R
Sbjct: 1398 AQVAYRYPRMNIIEIGAGTGGSTRMILPTLGNAFSTYTFTDISSGFFEAAEERFSQYADR 1457

Query: 97   LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL------LFNWISADTWPPFWESL 150
            +     D  K   E+ F       ++A+   ++G  +      +   +    W    E  
Sbjct: 1458 MIFKTLDMEKDLSEQGFTEGHYDMVLASNVLHVGPDIDLTLSNVRKLVKPGGWLINMEVA 1517

Query: 151  TLLFQKEVGERITAQKNS 168
            T       G  ++     
Sbjct: 1518 TYFPSLREGFSMSGFPGW 1535


>gi|242212546|ref|XP_002472106.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728836|gb|EED82722.1| predicted protein [Postia placenta Mad-698-R]
          Length = 280

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 24/156 (15%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI----------LKDISSQH 93
           G   G  VIEIG G G+ T +L T       VI  D                    +S  
Sbjct: 34  GIEHGENVIEIGCGQGDCTVVLATAVGDAGHVIAIDPASLDYGSPYTLGQAQAHLRASPV 93

Query: 94  PNRLEIIQDD---ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             R++ +Q D    L+   +K+        ++A   +   +    + I A   P      
Sbjct: 94  GKRIDFVQADPREFLRGTTDKY-----TTAVLAQCIWYFSSPQTLSAILAALAPRVKRIC 148

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
              +     +   A         L+ LT    +   
Sbjct: 149 LSEYALTASDPRAAPH------VLAALTQASLECRK 178


>gi|242219703|ref|XP_002475628.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725178|gb|EED79177.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1271

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNL 61
           +I E +    G  V+EIG+G G+L
Sbjct: 931 RIIELADIRPGHRVLEIGSGWGSL 954


>gi|94497834|ref|ZP_01304400.1| hypothetical protein SKA58_17238 [Sphingomonas sp. SKA58]
 gi|94422723|gb|EAT07758.1| hypothetical protein SKA58_17238 [Sphingomonas sp. SKA58]
          Length = 196

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 28/158 (17%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           DL ++ +         G  V+++G G G L   L          +E D        ++++
Sbjct: 7   DLALIARTVR-----PGARVLDVGCGDGALMAELRDRAQADARGLEIDA------SNVAA 55

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
                L ++Q DA   D   + + S    I++          L               + 
Sbjct: 56  AVGRGLSVVQGDA-DTDLTYYPDASFDYAILSQTLQTTRRPDL---------------VV 99

Query: 152 LLFQKEVGERITAQKNSPHY-GRLSVLTGWRTKATMMF 188
               +   +   +  N  H+ GRLS++ G R   T + 
Sbjct: 100 EELLRIATQAFVSFPNFAHWRGRLSLMWGGRMPVTRLL 137


>gi|91773078|ref|YP_565770.1| methyltransferase [Methanococcoides burtonii DSM 6242]
 gi|91712093|gb|ABE52020.1| methyltransferase [Methanococcoides burtonii DSM 6242]
          Length = 283

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++K  +      G  V++IG+GPG+L   L    A  V  +E  +    +L++  S++
Sbjct: 54  IEKTLKELPLKKGSRVLDIGSGPGSLAIPLSEKVAH-VTAVEPGKGMMELLQENISKY 110


>gi|88855119|ref|ZP_01129784.1| hypothetical protein A20C1_04536 [marine actinobacterium PHSC20C1]
 gi|88815647|gb|EAR25504.1| hypothetical protein A20C1_04536 [marine actinobacterium PHSC20C1]
          Length = 263

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 37  KKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           + IA S+         G+++++IG GPG +T       A    VI  D     I +  S+
Sbjct: 21  RTIANSAAYLEPHLQPGLSLLDIGCGPGTITAEFAERLA-PAAVIGLDAAPAAI-EKASA 78

Query: 92  QHPNRLEIIQDD--ALKVDFEKF 112
              + L  I  D  AL  D   F
Sbjct: 79  FTADNLSFIVGDAYALPFDDNSF 101


>gi|116750921|ref|YP_847608.1| type 11 methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116699985|gb|ABK19173.1| Methyltransferase type 11 [Syntrophobacter fumaroxidans MPOB]
          Length = 225

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQ 101
           +    G  ++++G G G  T +LL  GAR V  +E      P+L+   ++   R   +++
Sbjct: 36  ARPAPGERLLDVGCGTGVFTLVLLDAGAR-VTGLEL---SLPMLRRAGNKATGRPFHMVR 91

Query: 102 DDALKVDFEKFF 113
            D   + F    
Sbjct: 92  GDMRTLPFADAA 103


>gi|317486545|ref|ZP_07945368.1| methyltransferase domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922220|gb|EFV43483.1| methyltransferase domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 258

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQHPNRL 97
            +         ++++G GPGN TQ+L       + +I  D   +    +KD    HP+ +
Sbjct: 23  VKRIDLEQPRKLLDVGCGPGNSTQVLADAFPNALRIIGIDSSPEMIEAVKD---DHPD-M 78

Query: 98  EIIQDDALKVDF--EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           E    DAL +    E  F++      I  +P +   RL+ + ++             +  
Sbjct: 79  EFRICDALNLPSLGEDGFDVVFSNACIQWVPDH--PRLIRDMLALLRPGGMLAVQVPMNY 136

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTK---ATMMFDISPHVFF 196
           +E   RI         G L+    WR +   A +   +S   +F
Sbjct: 137 QEPIHRII--------GELAASDEWRAELASARIFHTLSQEAYF 172


>gi|300722713|ref|YP_003712003.1| putative phenylalanine racemase [Xenorhabdus nematophila ATCC 19061]
 gi|297629220|emb|CBJ89817.1| putative Phenylalanine racemase (ATP-hydrolyzing) [Xenorhabdus
            nematophila ATCC 19061]
          Length = 4823

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 50   TVIEIGAGPGNLTQMLLTLGARKVIVIEK---DQQFFPILKDISSQHPNRLEIIQDD 103
             V+EIGAG G+ T ++L+  A K I  E    D      L+    ++  +L I + D
Sbjct: 1972 RVLEIGAGTGSSTTVILSALAEKGIATEYWFTD-VSAAFLRRAHERYGAKLTIKRFD 2027


>gi|294463006|gb|ADE77041.1| unknown [Picea sitchensis]
          Length = 409

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 18/101 (17%)

Query: 27  QNFLLD--------LNILK-KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           QN L D          +++ +I        G  V+++GAG G L+      GA+ V  +E
Sbjct: 13  QNMLQDYVRTGSYYAAVIENRI-----DFHGRIVVDVGAGSGILSLFAAQAGAKHVYAVE 67

Query: 78  KDQQFFPILKDISSQHPN---RLEIIQDDALKVDFEKFFNI 115
              +     + + + +P+    + +I+    +V+  +  +I
Sbjct: 68  A-SEMVDYARRLVAGNPSLGQHITVIKGKIEEVELPEKADI 107


>gi|258592197|emb|CBE68506.1| Similar to phosphatidylethanolamine N-methyltransferase [NC10
           bacterium 'Dutch sediment']
          Length = 207

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 37  KKI-----AESS---GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            KI       +    G      V+E+G G G L   L       ++ I+   +     ++
Sbjct: 25  DKIFHPGRVAAIPLLGIKPNDLVLEVGIGTG-LNLPLYPQDCH-LVGIDLSSEMLSKARE 82

Query: 89  ISSQHP-NRLEIIQDDALKVDFE-KFFNISSPIRIIANLP 126
              ++  N + I + DA K++F  + F+      +I+ +P
Sbjct: 83  KVREYGMNNVTIKEMDASKLEFPDEHFDHVLATYVISAVP 122


>gi|261889374|gb|ACY06270.1| methyltransferase [Streptomyces flaveolus]
          Length = 289

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 30  LLDLNI---LKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFP 84
           L +  I    ++   S+G   G++V++IGAG G  +L    L      V+ IE+D     
Sbjct: 20  LQNEAISPFTERTLRSAGVRPGMSVLDIGAGLGYVSLLAAQLVGPGGHVVGIERDPGTVH 79

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
             + ++ +          D+++ +     + + P++ 
Sbjct: 80  KARILAQEAG------LADSVRYEAADLADFTWPMKF 110


>gi|262301077|gb|ACY43131.1| arg methyltransferase [Milnesium tardigradum]
          Length = 246

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQ 101
             +    V+++G G G L+      GA+KV  ++         + I  +    N + +IQ
Sbjct: 19  HLIRDKVVLDVGCGTGILSMFAAKAGAKKVYAVDC-SNIVHSARQIIKENGFENVITVIQ 77

Query: 102 DDALKVDFEKFFNISSPIRII 122
               KV+  +  +    + +I
Sbjct: 78  G---KVEELELPDGCEKVDVI 95


>gi|297560240|ref|YP_003679214.1| protein-L-isoaspartate(D-aspartate) O-methyl transferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844688|gb|ADH66708.1| protein-L-isoaspartate(D-aspartate) O-methyl transferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 381

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRL 97
            +      G+ V+E+G G G  T  LL    G   V  +E D +     +          
Sbjct: 96  VQRLRLAPGMRVLEVGTGSGY-TAALLARFLGDDAVTSVEIDFELAEQARVRLMSAGLTP 154

Query: 98  EIIQDDALKVD 108
            ++  D ++  
Sbjct: 155 LVVSGDGMRGW 165


>gi|229822143|ref|YP_002883669.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
 gi|229568056|gb|ACQ81907.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
          Length = 223

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 41  ESSGSLDGI----TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            ++  L        +++   G G L+++L   GAR V  ++  +      +++ +  P  
Sbjct: 26  AAADVLPSDLAGQRILDQACGWGQLSRILAERGAR-VSGVDLSENLVGHARELEAAAPLG 84

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANL 125
           +E +  DA    +   ++     +++ N+
Sbjct: 85  IEYLVGDATTTSW---WDGEPYDQVVCNM 110


>gi|212709010|ref|ZP_03317138.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
           30120]
 gi|212688376|gb|EEB47904.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
           30120]
          Length = 428

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 8/143 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLE 98
           AE    ++G  ++++ A PG  T  +L L  +  V+ ++ D      +K+   +      
Sbjct: 239 AELLSPINGENILDLCAAPGGKTTHILELAPKAHVLAVDIDDARLKRVKENLQRLKQHAT 298

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLF 154
           +IQ D  K   E++       RI+ + P +    +       W+  D+       L    
Sbjct: 299 VIQGDGTK--PEEWAKDQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIQELSQLQAQI 356

Query: 155 QKEVGERITAQKNSPHYGRLSVL 177
             E          +  Y   S++
Sbjct: 357 -LEAVWSYLKPGGTLVYATCSIM 378


>gi|171463398|ref|YP_001797511.1| RNA methyltransferase, TrmA family [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192936|gb|ACB43897.1| RNA methyltransferase, TrmA family [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 475

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 8/154 (5%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           N +++  ++ +            V+++  G GN T  L    A++V+ IE  +      K
Sbjct: 301 NHMMNRALVSRAIRLLEVQPTDRVLDLFCGIGNFTLPLA-RKAKQVLGIEGLESLTARAK 359

Query: 88  DISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW----ISAD 141
             +  +   ++   +Q D  +V  E   +     R + + P      +        +   
Sbjct: 360 SNAQHNGLSDKASFMQSDLFEVTSETVASWGGAERWLMDPPRKGAMDICKALAELHLQQS 419

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
              P          K +   +    +   Y RLS
Sbjct: 420 DLLPERIVYVSCNPKTLARDVEILCHQAGY-RLS 452


>gi|188584955|ref|YP_001916500.1| protein-L-isoaspartate O-methyltransferase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|209573201|sp|B2A578|PIMT_NATTJ RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|179349642|gb|ACB83912.1| protein-L-isoaspartate O-methyltransferase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 210

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 13/109 (11%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + ++        V+E+G G G  T +L  L  +KV  +E+     P L + + +
Sbjct: 65  PYIVAMMTQALEPSSHDIVLEVGTGSGYQTAILAEL-TKKVFSLER----IPELSEQAGR 119

Query: 93  HPNR-------LEIIQDDA-LKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             ++       L+I  DD  L +  +K F+        + +P  +  +L
Sbjct: 120 ILSKLGYQNIVLKISDDDNDLTIHEQKEFDKIIVTAAASQIPPELTQQL 168


>gi|119871751|ref|YP_929758.1| methyltransferase type 12 [Pyrobaculum islandicum DSM 4184]
 gi|119673159|gb|ABL87415.1| Methyltransferase type 12 [Pyrobaculum islandicum DSM 4184]
          Length = 254

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +V+E+GAG G     L    +R V+ +E  ++    L+  + +   ++++++
Sbjct: 59  SVLEVGAGAGAYAVPLAKRVSR-VVAVEPSREMARYLRKYAEEEGVKVDVVE 109


>gi|15603381|ref|NP_246455.1| hypothetical protein PM1516 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721903|gb|AAK03600.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 200

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---ISSQHPN 95
           I ++       T ++  AG G L    L+  A++V  +E D+     L         +  
Sbjct: 56  IVDA-------TCLDCFAGSGALGFEALSRQAKQVTFLELDKNVATQLSKNLATLKCNAE 108

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           +  +I  ++L+   +        I  I    +    +   + ++   W        +  +
Sbjct: 109 QANVINQNSLQFLNQPQTAPHFDIVFIDPPFHFGLAQQTVDLLARHNWLKP--DALVYVE 166

Query: 156 KEVGERITAQKNS 168
            E  + I A +N 
Sbjct: 167 TEKDKPIIAPENW 179


>gi|326332811|ref|ZP_08199069.1| putative methyltransferase, S-Adenosyl-L-methionine (SAM)-MTase
          protein [Nocardioidaceae bacterium Broad-1]
 gi|325949369|gb|EGD41451.1| putative methyltransferase, S-Adenosyl-L-methionine (SAM)-MTase
          protein [Nocardioidaceae bacterium Broad-1]
          Length = 251

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQ 92
          A+ +    G  V+++G GPG LT+ L+TL  A  V  ++    F   +    ++
Sbjct: 26 ADFARISMGQRVLDVGCGPGTLTRHLVTLTEAHLVAAVDPSPPFIEAVARQLAR 79


>gi|320354242|ref|YP_004195581.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122744|gb|ADW18290.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfobulbus
           propionicus DSM 2032]
          Length = 659

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           ++++ E +G      V+EIG G G      +      ++ I   ++ +  +     +   
Sbjct: 421 IRRVLELAGIGPDDRVLEIGCGWGGFALEAVRATGCHLLAITVSREQYDWVSRRVREEGL 480

Query: 94  PNRLEIIQDD 103
            +R+E+   D
Sbjct: 481 DDRIEVQLTD 490


>gi|312797360|ref|YP_004030282.1| methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312169135|emb|CBW76138.1| Methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454]
          Length = 237

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALKV 107
           AG G L     + GA++V+++E+D +    L  I  +   + ++I+Q DAL++
Sbjct: 91  AGTGALGFEAASRGAQRVVMVERDARAAAQLGAIRQKLDAQAIDIVQADALRL 143


>gi|289616863|emb|CBI56429.1| unnamed protein product [Sordaria macrospora]
          Length = 528

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 5/124 (4%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK--DQQFFPILKDISS 91
           N +    E++       V+EIG G G +    +     +V  I    +Q+ +   +   +
Sbjct: 270 NKINYFIEAAKIKPTDHVLEIGTGWGTMAIEAVRKTGCRVTTITLSQEQKIYAEKRIREA 329

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
              + +E+     L         +     I   +   +G + L  + S        +   
Sbjct: 330 GFSDNIEVHL---LDYRLLPDRKVPYDKIISCEMIEAVGEKFLPTYFSRIDKLLKKDGGI 386

Query: 152 LLFQ 155
            +FQ
Sbjct: 387 AVFQ 390


>gi|258515984|ref|YP_003192206.1| Methyltransferase type 12 [Desulfotomaculum acetoxidans DSM 771]
 gi|257779689|gb|ACV63583.1| Methyltransferase type 12 [Desulfotomaculum acetoxidans DSM 771]
          Length = 191

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 33/196 (16%)

Query: 29  FLLDL-----------NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIV 75
           FLL+             + +K+ +S        ++E+GAG G  T+ +L L +    + +
Sbjct: 10  FLLNPCTIGSITPSSFYLTEKMVKSWEVCLCRNIMELGAGTGVFTENILKLKSSSCNLYL 69

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII--ANLPYNIGTRL 133
            EKD++    LK            +  DALK+   +       + ++        +   +
Sbjct: 70  FEKDERMNAELKSKFPGIK-----LFSDALKIPELRSTGEIEQVDLVISGLPFTAMPGEI 124

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
               +             + FQ  +      +     Y R+ V         ++ +I P 
Sbjct: 125 RNKILEGAFDILKPGGKFIAFQYSLHML---KHLEKMYNRVDVEF-------VLLNIPPA 174

Query: 194 V---FFPSPKVTSTVI 206
                   PK+  ++I
Sbjct: 175 FIYRCVKEPKLKHSLI 190


>gi|229196986|ref|ZP_04323725.1| hypothetical protein bcere0001_25390 [Bacillus cereus m1293]
 gi|228586475|gb|EEK44554.1| hypothetical protein bcere0001_25390 [Bacillus cereus m1293]
          Length = 245

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSLDG---ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+      G    T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  IKNENWLQEVAKEVQEQIGYSFQTMLELGAGNGGFARAMSNLDVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  + +EI   D  K++FE+ F++
Sbjct: 76  VMFAKEHSTSDIEIHCADFYKINFEEKFDV 105


>gi|254482611|ref|ZP_05095849.1| tRNA (guanine-N(7)-)-methyltransferase [marine gamma
           proteobacterium HTCC2148]
 gi|214036970|gb|EEB77639.1| tRNA (guanine-N(7)-)-methyltransferase [marine gamma
           proteobacterium HTCC2148]
          Length = 228

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 26/165 (15%)

Query: 46  LDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
             G  V+EIG G G +L +M         + IE        +L  +  +  N + +   D
Sbjct: 52  RPGPKVLEIGFGMGQSLVEMAAAAPDNNFVGIEVHKPGVGRLLHSMVDEGVNNVRVYCHD 111

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           A++V  +   +                +         D W         L Q E   ++T
Sbjct: 112 AVEVLRDCIADE---------------SLDTVQIFFPDPWHKKRHHKRRLIQPEFVTQLT 156

Query: 164 AQKNSPHYGRLSVLTGWRTK--------ATMMFD-ISPHVFFPSP 199
            +  S     L+       +        A  + + + P  F P P
Sbjct: 157 RKLKSGGILHLATDWQQYAEQMMEVLTAAEGLSNSVGPEQFSPRP 201


>gi|195440770|ref|XP_002068213.1| GK12827 [Drosophila willistoni]
 gi|194164298|gb|EDW79199.1| GK12827 [Drosophila willistoni]
          Length = 433

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 25/112 (22%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLL-DLNILKKIAES------------SGSLDGITVIEIG 55
             ++     +I+  K +G N L+ D   L+ IAES              + +G  +  +G
Sbjct: 147 ETRSPFQKIQIMHSKTLG-NMLILDE--LQNIAESDLIYTETLMGRGIENYEGKEICILG 203

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
            G G L   LL    + V+++E D        ++  Q  N+ L  I  D L+
Sbjct: 204 GGDGALLYELLKENPKHVVMLEID--------ELVMQACNKHLNSICGDVLE 247


>gi|195376249|ref|XP_002046909.1| GJ12230 [Drosophila virilis]
 gi|194154067|gb|EDW69251.1| GJ12230 [Drosophila virilis]
          Length = 367

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 25/110 (22%)

Query: 11  KTILSHYKIIPKKYMGQNFLL-DLNILKKIAES------------SGSLDGITVIEIGAG 57
           ++     +I+  K +G N L+ D   L+ IAES              + +G  +  +G G
Sbjct: 149 RSPFQKIQIMHSKTLG-NMLILDE--LQNIAESDLIYTETLMGRGIENYEGKEICILGGG 205

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
            G L   LL    + V+++E D        ++  Q  N+ L  I  D L+
Sbjct: 206 DGALLYELLKENPKHVVMLEID--------ELVMQACNKYLNTICGDVLE 247


>gi|322386601|ref|ZP_08060226.1| adenine-specific methyltransferase [Streptococcus cristatus ATCC
           51100]
 gi|321269274|gb|EFX52209.1| adenine-specific methyltransferase [Streptococcus cristatus ATCC
           51100]
          Length = 321

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPIL 86
           FL+D          +       ++EIG+G GNL + LL    + +  + +E D     + 
Sbjct: 100 FLIDQ--------LAQDERVD-LLEIGSGTGNLAETLLNHTQKNMDYLGLEIDDLLIDLS 150

Query: 87  KDISSQHPNRLEIIQDDALK 106
             I+    ++    Q DA++
Sbjct: 151 ASIAEVMNSKAHFAQGDAVR 170


>gi|224057248|ref|XP_002299193.1| predicted protein [Populus trichocarpa]
 gi|222846451|gb|EEE83998.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPN 95
           + I ++   + G  V+++G G G L+      GA +VI IE  ++   +   +  +Q+  
Sbjct: 280 QAILKNPSLMTGAVVMDVGCGTGILSLFAAKTGASRVIAIEASEKMASVATQVCNNQYTG 339

Query: 96  RLEIIQD 102
            +E++Q 
Sbjct: 340 VMEVVQG 346


>gi|224002032|ref|XP_002290688.1| hypothetical protein THAPSDRAFT_262512 [Thalassiosira pseudonana
           CCMP1335]
 gi|220974110|gb|EED92440.1| hypothetical protein THAPSDRAFT_262512 [Thalassiosira pseudonana
           CCMP1335]
          Length = 203

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 19/97 (19%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM-LLTL 68
            + + S   +  KK  G                +    G  V+++ AG G  T   L+  
Sbjct: 16  TRVMFSRGNVTEKKRFG----------------ALVQPGDRVLDMYAGIGYYTLPALIHG 59

Query: 69  GARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103
            AR V   E +      L+     +   +++ +++ D
Sbjct: 60  KARHVTACEWNPNAIYALRYNLKANGVDDKVTVLEGD 96


>gi|21910406|ref|NP_664674.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS315]
 gi|21904604|gb|AAM79477.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
          Length = 197

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           +  H +  + +              FL D  +  KK+ +        +    +   V+++
Sbjct: 11  DSLHDIHEVKVELLNHPFT------FLTDSGVFSKKMVDFGSQVLLETLNFKENERVLDL 64

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L  +      +++ + +   + +  ++ +   + I Q +  + +    F 
Sbjct: 65  GCGYGPLGISLAKVQRVDATLVDINNRALDLARKNATNNQVAVTIFQSNIYE-NISGHFE 123

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQK 156
                 II+N P   G R++ + I     +      LT++ QK
Sbjct: 124 -----HIISNPPIRAGKRVVHSIIEESIDFLVVNGDLTIVIQK 161


>gi|15607588|ref|NP_214961.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis H37Rv]
 gi|31791625|ref|NP_854118.1| putative cyclopropane-fatty-acyl-phospholipid synthase UFAA1
           (cyclopropane fatty acid synthase) (CFA synthase)
           [Mycobacterium bovis AF2122/97]
 gi|121636361|ref|YP_976584.1| putative cyclopropane-fatty-acyl-phospholipid synthase ufaA1
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660212|ref|YP_001281735.1| cyclopropane-fatty-acyl-phospholipid synthase UfaA1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148821644|ref|YP_001286398.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis F11]
 gi|215402199|ref|ZP_03414380.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis 02_1987]
 gi|215409963|ref|ZP_03418771.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215425668|ref|ZP_03423587.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis T92]
 gi|215429270|ref|ZP_03427189.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis EAS054]
 gi|215444543|ref|ZP_03431295.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis T85]
 gi|219556266|ref|ZP_03535342.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis T17]
 gi|224988833|ref|YP_002643520.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797372|ref|YP_003030373.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis KZN 1435]
 gi|254230795|ref|ZP_04924122.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis C]
 gi|254363411|ref|ZP_04979457.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549393|ref|ZP_05139840.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185313|ref|ZP_05762787.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199445|ref|ZP_05766936.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis T46]
 gi|260203597|ref|ZP_05771088.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis K85]
 gi|289441826|ref|ZP_06431570.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis T46]
 gi|289445987|ref|ZP_06435731.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289552696|ref|ZP_06441906.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis KZN 605]
 gi|289568363|ref|ZP_06448590.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis T17]
 gi|289573032|ref|ZP_06453259.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis K85]
 gi|289744143|ref|ZP_06503521.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis 02_1987]
 gi|289748931|ref|ZP_06508309.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis T92]
 gi|289752477|ref|ZP_06511855.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis EAS054]
 gi|289756521|ref|ZP_06515899.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis T85]
 gi|294995951|ref|ZP_06801642.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis 210]
 gi|297632930|ref|ZP_06950710.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729905|ref|ZP_06959023.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis KZN R506]
 gi|298523924|ref|ZP_07011333.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306774543|ref|ZP_07412880.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu001]
 gi|306779292|ref|ZP_07417629.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu002]
 gi|306783081|ref|ZP_07421403.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu003]
 gi|306787448|ref|ZP_07425770.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu004]
 gi|306792000|ref|ZP_07430302.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu005]
 gi|306796187|ref|ZP_07434489.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu006]
 gi|306802044|ref|ZP_07438712.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu008]
 gi|306806256|ref|ZP_07442924.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu007]
 gi|306966452|ref|ZP_07479113.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu009]
 gi|306970647|ref|ZP_07483308.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu010]
 gi|307078372|ref|ZP_07487542.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu011]
 gi|307082931|ref|ZP_07492044.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu012]
 gi|313657234|ref|ZP_07814114.1| cyclopropane-fatty-acyl-phospholipid synthase UfaA1 [Mycobacterium
           tuberculosis KZN V2475]
 gi|2909522|emb|CAA17404.1| PROBABLE CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE UFAA1
           (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|31617211|emb|CAD93318.1| PUTATIVE CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE UFAA1
           (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE)
           [Mycobacterium bovis AF2122/97]
 gi|121492008|emb|CAL70471.1| Putative cyclopropane-fatty-acyl-phospholipid synthase ufaA1
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124599854|gb|EAY58864.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis C]
 gi|134148925|gb|EBA40970.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504364|gb|ABQ72173.1| cyclopropane-fatty-acyl-phospholipid synthase UfaA1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720171|gb|ABR04796.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis F11]
 gi|224771946|dbj|BAH24752.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253318875|gb|ACT23478.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414745|gb|EFD11985.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis T46]
 gi|289418945|gb|EFD16146.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437328|gb|EFD19821.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis KZN 605]
 gi|289537463|gb|EFD42041.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis K85]
 gi|289542116|gb|EFD45765.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis T17]
 gi|289684671|gb|EFD52159.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis 02_1987]
 gi|289689518|gb|EFD56947.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis T92]
 gi|289693064|gb|EFD60493.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis EAS054]
 gi|289712085|gb|EFD76097.1| cyclopropane-fatty-acyl-phospholipid synthase [Mycobacterium
           tuberculosis T85]
 gi|298493718|gb|EFI29012.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216892|gb|EFO76291.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu001]
 gi|308327736|gb|EFP16587.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu002]
 gi|308332098|gb|EFP20949.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu003]
 gi|308335913|gb|EFP24764.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu004]
 gi|308339490|gb|EFP28341.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu005]
 gi|308343355|gb|EFP32206.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu006]
 gi|308347265|gb|EFP36116.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu007]
 gi|308351195|gb|EFP40046.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu008]
 gi|308355848|gb|EFP44699.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu009]
 gi|308359768|gb|EFP48619.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu010]
 gi|308363709|gb|EFP52560.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu011]
 gi|308367362|gb|EFP56213.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis SUMu012]
 gi|323721119|gb|EGB30181.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis CDC1551A]
 gi|326902273|gb|EGE49206.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis W-148]
 gi|328457158|gb|AEB02581.1| cyclopropane-fatty-acyl-phospholipid synthase ufaA1 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 427

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 31/224 (13%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94
           + ++ + +G   G  V+EIG G G L       GA  + + +  +QQ     +  ++   
Sbjct: 197 IDRLLDVAGVQQGSHVLEIGTGWGELCIRAAARGAHIRSVTLSVEQQRLARQRVAAAGFG 256

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +R+EI   D   VD +                 ++ +  +   +   +WP ++ +L  L 
Sbjct: 257 HRVEIDLCDYRDVDGQYD---------------SVVSVEMIEAVGYRSWPRYFAALEQLV 301

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV------TSTVIHF 208
           +      I A     H    +  T    +   +F   P    PS +         T +  
Sbjct: 302 RPGGPVAIQAITMPHHRMLATRHTQTWIQ-KYIF---PGGLLPSTQAIIDITGQHTGLRI 357

Query: 209 IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQ 252
           +   +  P   E+L ++ +E F +RR      L  LG + +  +
Sbjct: 358 VDAASLRPHYAETL-RLWRERFMQRR----DGLAHLGFDEVFAR 396


>gi|333025079|ref|ZP_08453143.1| putative protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. Tu6071]
 gi|332744931|gb|EGJ75372.1| putative protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. Tu6071]
          Length = 435

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            V+E+G G G  T +L        V   E D+    + +    +     E+   D L
Sbjct: 157 RVLEVGTGTGWTTALLAHRLSVPAVTSFEIDESVAALARQRLRRFGLNPEVRVGDGL 213


>gi|318077973|ref|ZP_07985305.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Streptomyces sp. SA3_actF]
          Length = 430

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            V+E+G G G  T +L        V   E D+    + +    +     E+   D L
Sbjct: 123 RVLEVGTGTGWTTALLAHRLSVPAVTSFEIDESVAALARQRLRRFGLNPEVRVGDGL 179


>gi|318056626|ref|ZP_07975349.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Streptomyces sp. SA3_actG]
          Length = 401

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            V+E+G G G  T +L        V   E D+    + +    +     E+   D L
Sbjct: 123 RVLEVGTGTGWTTALLAHRLSVPAVTSFEIDESVAALARQRLRRFGLNPEVRVGDGL 179


>gi|302521239|ref|ZP_07273581.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. SPB78]
 gi|302430134|gb|EFL01950.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. SPB78]
          Length = 387

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            V+E+G G G  T +L        V   E D+    + +    +     E+   D L
Sbjct: 109 RVLEVGTGTGWTTALLAHRLSVPAVTSFEIDESVAALARQRLRRFGLNPEVRVGDGL 165


>gi|300786786|ref|YP_003767077.1| tRNA (adenine-N1-)-methyltransferase [Amycolatopsis mediterranei
           U32]
 gi|299796300|gb|ADJ46675.1| tRNA (adenine-N1-)-methyltransferase [Amycolatopsis mediterranei
           U32]
          Length = 276

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 6/74 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILK----DI 89
             +I        G  V+E GAG G LT  LL     A +V   E         +      
Sbjct: 88  AAQIVMWGDIFPGARVLEAGAGSGALTCSLLRAVGPAGQVHSYEIRDDHAEHAERNVVKF 147

Query: 90  SSQHPNRLEIIQDD 103
             + P    +   D
Sbjct: 148 FGEKPANWSLTVAD 161


>gi|295835362|ref|ZP_06822295.1| methyltransferase [Streptomyces sp. SPB74]
 gi|295825447|gb|EFG64255.1| methyltransferase [Streptomyces sp. SPB74]
          Length = 253

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            + +  + I        G  V+++G G G+L + LL   A  V  I+ D       ++ S
Sbjct: 57  HNAHYHRAILRRLPRRPG-PVLDVGCGSGDLAR-LLARRASAVTAIDADPGIVARAREAS 114

Query: 91  SQHPNRLEIIQDDALK 106
                   +   DAL 
Sbjct: 115 PAAAVTFTV--ADALD 128


>gi|291280257|ref|YP_003497092.1| SAM-dependent methyltransferase [Deferribacter desulfuricans SSM1]
 gi|290754959|dbj|BAI81336.1| SAM-dependent methyltransferase [Deferribacter desulfuricans SSM1]
          Length = 231

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 52  IEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQDDALKVD 108
           ++IG+G G L+ +L        +  +E D+  +  L +    +++ N++    +D  +  
Sbjct: 45  LDIGSGSGVLSVLLAKQFNIDCIDAVEIDKVMYECLVETIKMNRYENKIYPHNNDIFRFK 104

Query: 109 FEKFFNISSPIRIIANLPY 127
            ++ +++     +I N PY
Sbjct: 105 PDRMYDL-----VICNPPY 118


>gi|317051158|ref|YP_004112274.1| type 11 methyltransferase [Desulfurispirillum indicum S5]
 gi|316946242|gb|ADU65718.1| Methyltransferase type 11 [Desulfurispirillum indicum S5]
          Length = 268

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FLLD               G T+++IG G G  ++ L   G R V  ++   +       
Sbjct: 33  FLLDE---------LNLPAGSTILDIGCGTGRHSRELAKRGYR-VTGLDLSSEMLANAAT 82

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFN 114
           ++      ++ +  DA      + F+
Sbjct: 83  MAKDAGMSVQWVHADATSFSLPEQFD 108


>gi|240167732|ref|ZP_04746391.1| methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 247

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            + +K+   +   D   V+EIG G GNL  ++     A +++  + D       +  SSQ
Sbjct: 58  RVYEKLIAQADIGDNQRVLEIGCGTGNLAIRVKHAHPAAQLVGCDPDPLALRRAQRKSSQ 117

Query: 93  HPN-RLE 98
               R E
Sbjct: 118 LTGIRFE 124


>gi|297559596|ref|YP_003678570.1| hypothetical protein Ndas_0617 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844044|gb|ADH66064.1| hypothetical protein Ndas_0617 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 348

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGN--LTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             ++L+ +      L    V+E G+G  +  +   L   G  +++ +E D ++  + +++
Sbjct: 162 SPDVLRILVRQIDRLRPGLVVECGSGASSVWIGYALRRAGTGRLVAVEHDARYAELSREL 221

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            + H        DD ++V         +    +
Sbjct: 222 VAAHG------LDDIVEVRHAPLVQTPNTTVTV 248


>gi|188533128|ref|YP_001906925.1| Putative enzyme [Erwinia tasmaniensis Et1/99]
 gi|188028170|emb|CAO96028.1| Putative enzyme [Erwinia tasmaniensis Et1/99]
          Length = 277

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP--NRLE 98
           +       V++IG+G G +  ML    +  V    +E D++     ++  +  P  +R+ 
Sbjct: 72  APVTSVKRVLDIGSGSGLIALMLAQRTSEPVQIDAVELDEEAATQAQENVAASPWAHRVH 131

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + Q D ++       + S    I++N PY
Sbjct: 132 VQQADVVEWAQRCEHSYS---LIVSNPPY 157


>gi|163758076|ref|ZP_02165164.1| methyltransferase, putative [Hoeflea phototrophica DFL-43]
 gi|162284365|gb|EDQ34648.1| methyltransferase, putative [Hoeflea phototrophica DFL-43]
          Length = 207

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEII 100
           S+       V+EIG G G+ T + L          +  +    I +  +    P  +   
Sbjct: 33  SALLQATDHVLEIGCGTGS-TALRLAPCVAHYTATDGSRSMIDIARSKLELDTPTNVTFQ 91

Query: 101 QDDALKVDFEKFFN 114
           Q DA+++   + F+
Sbjct: 92  QADAVEMVEGRPFD 105


>gi|134100355|ref|YP_001106016.1| putative SAM-dependent methyltransferase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291007674|ref|ZP_06565647.1| putative SAM-dependent methyltransferase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912978|emb|CAM03091.1| putative SAM-dependent methyltransferase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 238

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L+ +A+      G  V+++G+G G     L   GA  V  +E ++ F       + Q   
Sbjct: 25  LRLVADYLEVSPGDRVLDVGSGRGWWNVELAARGAD-VTGLEINEDFAAAAVQRAEQAGA 83

Query: 96  RLEIIQDDALKVDFEK 111
            +  +   A + + E 
Sbjct: 84  AVRTVVGPAAEFEPEA 99


>gi|90419819|ref|ZP_01227728.1| putative methyltransferase, FkbM family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335860|gb|EAS49608.1| putative methyltransferase, FkbM family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 254

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
              G  V +IGA  G+ T++L  LGAR V+ +E   +   +L+ ++     R++I+Q 
Sbjct: 40  IRPGDLVFDIGAHVGDRTRVLHGLGAR-VVAVEPQPRLAALLR-LAFGWRRRIDIVQA 95


>gi|302349255|ref|YP_003816893.1| predicted rRNA methylase family protein [Acidilobus saccharovorans
           345-15]
 gi|302329667|gb|ADL19862.1| predicted rRNA methylase family protein [Acidilobus saccharovorans
           345-15]
          Length = 162

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             +L  + ++    +G  + ++G G G +  +       +K + +E   + +    +   
Sbjct: 15  PEVLDLVFQALDLKEGDVLYDLGCGDGRIVIEAAKRYPIKKAVGVELRDELYKEASERVK 74

Query: 92  Q--HPNRLEIIQDDALKVDFEK 111
           +     ++EI+  D  +V   +
Sbjct: 75  REGLDGKVEIVHGDFFRVPIGE 96


>gi|254284175|ref|ZP_04959143.1| cyclopropane-fatty-acyl-phospholipid synthase [gamma
           proteobacterium NOR51-B]
 gi|219680378|gb|EED36727.1| cyclopropane-fatty-acyl-phospholipid synthase [gamma
           proteobacterium NOR51-B]
          Length = 418

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QH 93
           L+ I+E+     G  V+EIG G G +          KV      ++ +   K + +    
Sbjct: 185 LELISEALDLQPGDEVVEIGTGWGGMAIYAAENYGCKVTTTTISEEQYQHTKALVASKGL 244

Query: 94  PNRLEIIQDD 103
            +R+ ++ DD
Sbjct: 245 QDRITVLCDD 254


>gi|222528214|ref|YP_002572096.1| O-methyltransferase-like protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455061|gb|ACM59323.1| O-methyltransferase-like protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 240

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL----TLGARKVIVIEKDQQFF--PILKDISSQHP 94
           +         V+E   G GNL   +L        +K+  +E  ++     +L    +   
Sbjct: 32  DFIQIKKNDVVVEF--GTGNLIIPILLWAKGKKFKKLYAVEIQKEVCDLAVLNRNINNLQ 89

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +R+E+I  D LK D  K F       +  N PY
Sbjct: 90  DRIEVINAD-LK-DALKIFGSEFANVVFTNPPY 120


>gi|212224325|ref|YP_002307561.1| protein-L-isoaspartate O-methyltransferase [Thermococcus onnurineus
           NA1]
 gi|229485661|sp|B6YX51|PIMT_THEON RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|212009282|gb|ACJ16664.1| hypothetical L-isoaspartyl protein carboxyl methyltransferase
           [Thermococcus onnurineus NA1]
          Length = 220

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +++  + E +   +G+ V++IG G G    L   L+      V  +E+  +     +  
Sbjct: 66  PHMVAIMLELAELEEGMNVLDIGTGSGWNAALAAELVKTD---VYTVERIPELVEFARKN 122

Query: 90  S--SQHPNRLEIIQDDALK 106
              + + +R+ +I  D  K
Sbjct: 123 LEKAGYADRVHVIIGDGTK 141


>gi|254390967|ref|ZP_05006176.1| methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
 gi|294816670|ref|ZP_06775312.1| Methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326445577|ref|ZP_08220311.1| Methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
 gi|197704663|gb|EDY50475.1| methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
 gi|294321485|gb|EFG03620.1| Methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 269

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           I     S  G  V++IG G G+L++     GAR V+ ++   +     ++++ +
Sbjct: 56  IRSLIPSPVGRDVLDIGCGTGDLSRWCARSGARSVLAVDPSARMIDRARELTGE 109


>gi|170290971|ref|YP_001737787.1| tRNA methyltransferase complex GCD14 subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170175051|gb|ACB08104.1| tRNA methyltransferase complex GCD14 subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 260

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           SG   G TV+EIG G G LT +L     R   +   D +     ++        L ++  
Sbjct: 96  SGIRPGDTVVEIGTGSGALTMVLANFLGRSGRLYSYDIR-----RESLETAERNLRLLGI 150

Query: 103 D--ALKV-DFEKFFNISSPIRIIANLP 126
           D   LK  D ++  + S+   I  ++P
Sbjct: 151 DNVVLKHKDAKEGIDESNVDAIFLDIP 177


>gi|154507617|ref|ZP_02043259.1| hypothetical protein ACTODO_00097 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797251|gb|EDN79671.1| hypothetical protein ACTODO_00097 [Actinomyces odontolyticus ATCC
           17982]
          Length = 200

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G TV+E   G G ++  +    AR V+  +  +      +   ++H N + + Q D 
Sbjct: 33  IRPGDTVLECACGTGAISAAIAPACAR-VVATDYSEGMLKQARKKLAKHSN-VTVEQADI 90


>gi|149728859|ref|XP_001493498.1| PREDICTED: similar to HemK methyltransferase family member 1
           (M.HsaHemKP) [Equus caballus]
          Length = 357

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS--QHPNRLEI 99
            G+  G  ++E+G G G ++  LL  L   +VI ++K +    +  + +   Q  +R+ I
Sbjct: 154 VGAQGGPLILEVGCGSGAISLSLLSQLPQSRVIAVDKGEAAICLTHENAQRLQLQDRIRI 213

Query: 100 IQDDA-LKVDFEKFFNISSPIRIIANLPY 127
           +  D  L+  +  F        +++N PY
Sbjct: 214 MLLDVTLEGSWAHFVPWGPMDLVVSNPPY 242


>gi|118093593|ref|XP_001233695.1| PREDICTED: similar to DC3 [Gallus gallus]
          Length = 212

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I  +   ++  TV ++G G G L+     LGA   +  + D +      +I + +    E
Sbjct: 43  IHNTFDDIENKTVADLGCGCGMLSIGSAMLGAGLCVGFDIDAEAL----EIFNSNLEDFE 98

Query: 99  IIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           +   D ++ D     +    +   +I N P+        + I   T     ++      K
Sbjct: 99  LTNVDVVQCDVSSLPDSMSETFDTVIMNPPFGTKHNKGMDMIFLKTALQMAKTAVYSLHK 158

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTK 183
               +   +K      ++ V+   R  
Sbjct: 159 TSTRQHVQKKADEWKVKMEVIAELRYD 185


>gi|329025284|gb|AEB71648.1| S-adenosyl-L-methionine-dependent methyltransferase [Riemerella
           phage RAP44]
          Length = 95

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +  T++E  AG GN+   L   GA++V+  E ++    I K+ ++Q       I  D L+
Sbjct: 27  NNKTILEPSAGKGNIIDYLKEYGAKEVLFCEINKDLAEICKNKANQ-------IGTDFLE 79

Query: 107 VDFEKFFNIS 116
           +  E    + 
Sbjct: 80  LKPEAVAGVE 89


>gi|322515341|ref|ZP_08068337.1| metallothionein SmtA [Actinobacillus ureae ATCC 25976]
 gi|322118628|gb|EFX90850.1| metallothionein SmtA [Actinobacillus ureae ATCC 25976]
          Length = 236

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ--HPNR 96
            S+       ++++G G G +  ML    A   ++  +E +   +    +        +R
Sbjct: 32  ASADVTGVEQILDLGTGTGLVAVMLAQRTAETTQITALELEPNAYQQAVENCQNSVFSDR 91

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           L + Q D L+  FEK F++     I++N PY
Sbjct: 92  LHVCQGDVLQHHFEKKFDL-----IVSNPPY 117


>gi|313207450|ref|YP_004046627.1| DNA-methyltransferase [Riemerella anatipestifer DSM 15868]
 gi|312446766|gb|ADQ83121.1| DNA-methyltransferase [Riemerella anatipestifer DSM 15868]
 gi|315023345|gb|EFT36355.1| DNA-methyltransferase [Riemerella anatipestifer RA-YM]
 gi|325335092|gb|ADZ11366.1| DNA-methyltransferase [Riemerella anatipestifer RA-GD]
          Length = 95

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +  T++E  AG GN+   L   GA++V+  E ++    I K+ ++Q       I  D L+
Sbjct: 27  NNKTILEPSAGKGNIIDYLKEYGAKEVLFCEINKDLAEICKNKANQ-------IGTDFLE 79

Query: 107 VDFEKFFNIS 116
           +  E    + 
Sbjct: 80  LKPEAVAGVE 89


>gi|238917056|ref|YP_002930573.1| hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
 gi|238872416|gb|ACR72126.1| Hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
          Length = 389

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           KK  + +      TVI+   G G +  ++ +  A KVI +E + +     K  +S +  +
Sbjct: 232 KKAIQLADISKNDTVIDAYCGIGTI-GIVASKKAGKVIGVELNSEAVSDAKINASINNIK 290

Query: 97  -LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            +  +  DA     E   N  + + I+           L + +        + S     Q
Sbjct: 291 NVTFVNADAGDFLVEYAKNAKADVVIMDPPRSGSTPEFLNSLLKIKPDRIVYISCGPDTQ 350


>gi|225848847|ref|YP_002729011.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644266|gb|ACN99316.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 282

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 7/143 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQH 93
           +++K+     +L     +E+G G G ++  LL      K+  ++  ++   I K  + ++
Sbjct: 98  LVEKVLHQLENLKNPLGLEVGVGSGCISVSLLYNKKDLKMYALDISEKALKITKINAEKY 157

Query: 94  P--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
              +RL +I+ D +K D +   N+     +++N PY I      +        P    ++
Sbjct: 158 DLLDRLTLIKFDVMKDDVKDL-NLDRLDFVVSNPPY-ISEDEYESLPEEVKKEPKEALIS 215

Query: 152 LLFQKEVGERITAQKNS--PHYG 172
                E  E+I  +  +    YG
Sbjct: 216 GKVGTEFYEKIVEKFKNYLKEYG 238


>gi|223983685|ref|ZP_03633861.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM
           12042]
 gi|225572812|ref|ZP_03781567.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM
           10507]
 gi|227824269|ref|ZP_03989101.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229827136|ref|ZP_04453205.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC
           49176]
 gi|291459465|ref|ZP_06598855.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|223964382|gb|EEF68718.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM
           12042]
 gi|225039869|gb|EEG50115.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM
           10507]
 gi|226904768|gb|EEH90686.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229788754|gb|EEP24868.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC
           49176]
 gi|291417922|gb|EFE91641.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 255

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPDPSDYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRRSQYAKQI 115

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           E    DA   + E    +         +  
Sbjct: 116 EFCVADA--TNRESLLGLKRNRAFTKAVSN 143


>gi|159041497|ref|YP_001540749.1| tRNA methyltransferase complex GCD14 subunit [Caldivirga
           maquilingensis IC-167]
 gi|157920332|gb|ABW01759.1| tRNA methyltransferase complex GCD14 subunit [Caldivirga
           maquilingensis IC-167]
          Length = 283

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH--PNRLE 98
                G  V+E G G G  T +L        +VI +EK  ++  + K+        + ++
Sbjct: 120 LNIRPGSRVLEAGLGSGYATVILAMHAGPFGQVITVEKSSKYIRVAKETLRAMGVYDNVD 179

Query: 99  IIQDDALKVD------FEKFFNISSPIRIIANLPYNIGT 131
           +I  D  ++            ++  P   I N+  ++  
Sbjct: 180 VINGDVSRIKLPSEYFNSALLDMGDPWNAIPNIINSLKH 218


>gi|56783459|emb|CAI38712.1| putative sugar transferase [Campylobacter jejuni]
          Length = 406

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 25/147 (17%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            + Q+ L    I   I + S        +EI  G G+L   LL L     I    D    
Sbjct: 93  RLSQHILK---IKDSILKYS--KKSDIFLEIAPGQGDL---LLALSKEAQICYSIDP--- 141

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L D      N + +          + FF+ +   ++   + + I      + +     
Sbjct: 142 STLSDKYCICDNIIHV----------KSFFDKNIVYKLKHKINFII----FRHLLEHIDT 187

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPH 170
           P  +    +   +E G       N+  
Sbjct: 188 PLTFLQDVVDLLEENGMIYIEVPNAND 214


>gi|56421037|ref|YP_148355.1| ribosomal protein L11 methyltransferase [Geobacillus kaustophilus
           HTA426]
 gi|81819664|sp|Q5KWZ9|PRMA_GEOKA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|56380879|dbj|BAD76787.1| ribosomal protein L11 methyltransferase [Geobacillus kaustophilus
           HTA426]
          Length = 312

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQD 102
              G  VI++G G G L+     LGA+ V  ++ D        L    ++  + + + Q+
Sbjct: 173 VRPGDHVIDVGTGSGILSIAAAMLGAQSVRALDLDPVAVDSARLNVKLNKVQHIVTVSQN 232

Query: 103 DALKVDFEK 111
           + L    E 
Sbjct: 233 NLLDHIEEP 241


>gi|148255319|ref|YP_001239904.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Bradyrhizobium sp. BTAi1]
 gi|146407492|gb|ABQ35998.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Bradyrhizobium sp. BTAi1]
          Length = 409

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQH 93
           K++AE+     G T++EIG G G   +        KV+ +      + F    +   +  
Sbjct: 182 KRLAEAIDLKPGQTLLEIGCGWGGFAEYAAKTFGTKVVGLTISQQQRDFAQR-RIHEAGL 240

Query: 94  PNRLEIIQDD 103
            +++EI   D
Sbjct: 241 ADKVEIRLQD 250


>gi|186686568|ref|YP_001869764.1| cyclopropane-fatty-acyl-phospholipid synthase [Nostoc punctiforme
           PCC 73102]
 gi|186469020|gb|ACC84821.1| Cyclopropane-fatty-acyl-phospholipid synthase [Nostoc punctiforme
           PCC 73102]
          Length = 375

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ-- 92
           L  +   +G  DG  ++++G G G+ +  +L+     KV  +         ++       
Sbjct: 143 LDDLIAKAGIEDGDEILDLGCGWGSASNYILSRFPHVKVTALNLSHGQCEYMRKKMRDPT 202

Query: 93  ---HPNRLEIIQDDALKVDFEKFFN 114
                +R  + + D   +DFE  F+
Sbjct: 203 SYLSSDRFTLYEKDFNDIDFENKFD 227


>gi|320534806|ref|ZP_08035225.1| methyltransferase domain protein [Actinomyces sp. oral taxon 171
          str. F0337]
 gi|320132985|gb|EFW25514.1| methyltransferase domain protein [Actinomyces sp. oral taxon 171
          str. F0337]
          Length = 295

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           + +++ E++G      VIE+G G G   ++LL         ++   +    + DI + H
Sbjct: 21 GLTRRLLEAAGPTSTDRVIELGPGVGRTAEILLAARPASYKGVDPSPEGREQVADILAAH 80

Query: 94 P 94
           
Sbjct: 81 S 81


>gi|296132761|ref|YP_003640008.1| Methyltransferase type 11 [Thermincola sp. JR]
 gi|296031339|gb|ADG82107.1| Methyltransferase type 11 [Thermincola potens JR]
          Length = 293

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             G+TV++IG GPGN T  L    A  V  ++       ILK+ + +
Sbjct: 78  TAGMTVLDIGCGPGNYTIPLAKRAAH-VWALDPASNMLEILKERAEK 123


>gi|307591966|ref|YP_003899557.1| methyltransferase type 11 [Cyanothece sp. PCC 7822]
 gi|306985611|gb|ADN17491.1| Methyltransferase type 11 [Cyanothece sp. PCC 7822]
          Length = 208

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK--DISSQ 92
           +++++   +       V ++G+G G +          K + I+ D +     K     + 
Sbjct: 60  VVQEMLRIAQVTSSDVVYDLGSGDGRIVISAAKNYGAKGVGIDIDPKLIQEAKANAREAG 119

Query: 93  HPNRLEIIQDDALKVDFEK 111
             +R++ I+ D  K D  +
Sbjct: 120 VSDRVKFIEQDFFKADLSE 138


>gi|148656352|ref|YP_001276557.1| hypothetical protein RoseRS_2227 [Roseiflexus sp. RS-1]
 gi|148568462|gb|ABQ90607.1| hypothetical protein RoseRS_2227 [Roseiflexus sp. RS-1]
          Length = 495

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 10/87 (11%)

Query: 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTL 68
          ++T         ++ +GQ F    ++   +A     L    T+++ GAG G L   L+  
Sbjct: 4  IRTSNKPIGQRNRESLGQ-FFTPSHVADLMASWVDPLPERITLLDAGAGTGTLIAALVRR 62

Query: 69 GAR--------KVIVIEKDQQFFPILK 87
            R        +V   E D      L 
Sbjct: 63 ICRMPGVTKQLRVTAFEIDPSLAQPLA 89


>gi|78777747|ref|YP_394062.1| hypothetical protein Suden_1550 [Sulfurimonas denitrificans DSM
          1251]
 gi|78498287|gb|ABB44827.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
          1251]
          Length = 275

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          ++         +  TV++IG GPG L   L  +  ++V+ I+   Q    L+
Sbjct: 46 VEDFISRMDISEDDTVLDIGCGPGTLAIPLAKM-VKEVVAIDFSAQMLQELQ 96


>gi|56751088|ref|YP_171789.1| Mg-protoporphyrin IX methyl transferase [Synechococcus elongatus
           PCC 6301]
 gi|81299250|ref|YP_399458.1| Mg-protoporphyrin IX methyl transferase [Synechococcus elongatus
           PCC 7942]
 gi|56686047|dbj|BAD79269.1| Mg-protoporphyrin IX methyl transferase [Synechococcus elongatus
           PCC 6301]
 gi|81168131|gb|ABB56471.1| magnesium protoporphyrin O-methyltransferase [Synechococcus
           elongatus PCC 7942]
          Length = 229

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           E+ G+L   +  + G G G+L+  L   GA+ V   +   +     ++ +SQ PN
Sbjct: 54  EADGNLSDRSFCDAGCGVGSLSLPLAQRGAQAVYASDISAKMVEEARERASQIPN 108


>gi|88856576|ref|ZP_01131233.1| SAM-dependent methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814230|gb|EAR24095.1| SAM-dependent methyltransferase [marine actinobacterium PHSC20C1]
          Length = 328

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
             +I   +    G  V+E G G G L+  LL        +   E+ ++F  I +      
Sbjct: 93  AAQIIGQADIFPGAHVVEAGVGSGALSLWLLRAIGATGTLSSFERREEFSEIAQSNVEAF 152

Query: 94  ----PNRLEIIQDD 103
               PN   +   D
Sbjct: 153 LGAKPNNWTVTVGD 166


>gi|289705307|ref|ZP_06501705.1| methyltransferase domain protein [Micrococcus luteus SK58]
 gi|289557970|gb|EFD51263.1| methyltransferase domain protein [Micrococcus luteus SK58]
          Length = 269

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGA---RKVIVIEKDQQFFPIL-KDISSQHPNRLE 98
           + + DG  V+E+GAG G  T++L    A   R V  +E       +L +++++    R+ 
Sbjct: 43  ADAADGADVVELGAGTGLFTRLLAARPADRVRTVTALEPSASMRAVLEREVAAGAGGRVR 102

Query: 99  IIQD 102
            +  
Sbjct: 103 AVPG 106


>gi|257054996|ref|YP_003132828.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
 gi|256584868|gb|ACU96001.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
          Length = 189

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 30/47 (63%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          E++G LDG+ V+++ +G G L    L+ GAR+ + +E D+    +L+
Sbjct: 37 EAAGELDGVRVLDLYSGSGALGLEALSRGAREAMFVEADRTAVEVLR 83


>gi|256824788|ref|YP_003148748.1| dimethyladenosine transferase (rRNA methylation) [Kytococcus
           sedentarius DSM 20547]
 gi|256688181|gb|ACV05983.1| dimethyladenosine transferase (rRNA methylation) [Kytococcus
           sedentarius DSM 20547]
          Length = 256

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 32  DLNILKKIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           D + + +  +  +   DG   +E+  G G +   L   G   V  IE  +     L D  
Sbjct: 29  DPHTIARTVDLLAELADGGPALELAVGTGRIAAPLAERGV-VVHGIELSRAMAGRLADKP 87

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
                R+ +   D         F ++    ++ N   N+ T+
Sbjct: 88  GG--ERVAVTIGDMTTTRVPGEFTVA---YLVFNTLNNLTTQ 124


>gi|218289891|ref|ZP_03494081.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240031|gb|EED07217.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 316

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
           +L++  E+     G   ++   G G  T  LL   A    VI  ++D+      + +  Q
Sbjct: 9   LLEEAVEALRPRPGGVYVDATLGGGGHTARLLERSAPGGAVIAFDQDETAIAHAEPLKRQ 68

Query: 93  HPNRLEIIQDDA 104
           +P RL +++ + 
Sbjct: 69  YPGRLTLVKANF 80


>gi|206603180|gb|EDZ39660.1| Putative methyltransferase [Leptospirillum sp. Group II '5-way CG']
          Length = 214

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 39  IAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I  ++        G  V+EIG G G   + L  L      V+  D    P L+      P
Sbjct: 34  IVRTAFERGYLGPGSRVLEIGCGEG---RNLRALWPGTAAVVGMDYVAEP-LRTAKKSMP 89

Query: 95  NRLEIIQDD 103
            ++ +IQ D
Sbjct: 90  EKVSLIQGD 98


>gi|220908181|ref|YP_002483492.1| ubiquinone/menaquinone biosynthesis methyltransferase [Cyanothece
           sp. PCC 7425]
 gi|219864792|gb|ACL45131.1| ubiquinone/menaquinone biosynthesis methyltransferase [Cyanothece
           sp. PCC 7425]
          Length = 226

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 11/92 (11%)

Query: 24  YMGQNFLLDLNILKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
            +GQ+      I K++  + S + +G T +++  G G+L  +L  +  R   VI  D  F
Sbjct: 24  SLGQH-----RIWKRMTVKWSEAREGDTCLDLCCGSGDLAVLLGAVVGRAGTVIGLD--F 76

Query: 83  FPI---LKDISSQHPNRLEIIQDDALKVDFEK 111
            P    +    S H  ++E IQ DAL + +  
Sbjct: 77  APAQLAIARQRSHHQPQIEWIQGDALTIPYPD 108


>gi|168259009|gb|ACA23190.1| SAM independent family methyltransferase [Bifidobacterium
           thermophilum]
          Length = 255

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRQSQYAKQI 115

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 116 EFCVADA 122


>gi|167516500|ref|XP_001742591.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779215|gb|EDQ92829.1| predicted protein [Monosiga brevicollis MX1]
          Length = 216

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 9/148 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            + G L G TV+++G G G L+      GA  V+ ++ D        DI+  +  RLE+ 
Sbjct: 43  NAFGDLLGKTVVDLGCGCGMLSIACALQGADHVLAVDIDSAAL----DIALDNAARLELE 98

Query: 101 QD-DALKVDFEKFFNISSPIR----IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            D D +  D      +    R    ++ N P+        + +         +       
Sbjct: 99  DDIDFVLADAPWPLALGPGARQVDTVVMNPPFGTKHNAGLDVLFLRRAIEIADGAVYSLH 158

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTK 183
           K        +K       + V+   R +
Sbjct: 159 KTSTRAFLQRKAKELGAEMEVVAELRYE 186


>gi|188582540|ref|YP_001925985.1| methyltransferase small [Methylobacterium populi BJ001]
 gi|179346038|gb|ACB81450.1| methyltransferase small [Methylobacterium populi BJ001]
          Length = 250

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQH--PNR 96
           A       G T+ ++GA  G +         A +V+++E+D     + ++ +S +    R
Sbjct: 33  ARLVVPAPGDTLYDLGASTGAVGLAAARMSEACRVVLVERDPDLAALARENASANGLAER 92

Query: 97  LEIIQDDAL 105
           + +I  D L
Sbjct: 93  VAVIAADVL 101


>gi|308174333|ref|YP_003921038.1| 50S ribosomal protein L11 methyltransferase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607197|emb|CBI43568.1| ribosomal protein L11 methyltransferase [Bacillus amyloliquefaciens
           DSM 7]
          Length = 311

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           L++I        G  VI++G G G L+     L A  V   + D       +
Sbjct: 169 LERIV-----QKGDRVIDVGTGSGILSIAAAMLKAESVHAYDLDPVAVESAR 215


>gi|296115216|ref|ZP_06833857.1| protein-L-isoaspartate O-methyltransferase [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978317|gb|EFG85054.1| protein-L-isoaspartate O-methyltransferase [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 237

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPIL 86
           L +  ++ ++ +++   +G  V+ + AG G    LT  +      ++  +E D     I 
Sbjct: 75  LTEPRVIARMLQTAAPREGERVLVVAAGTGYLVALTCTMQE--GLRIDAVESDTSLAAIG 132

Query: 87  KDISSQHPNRLEIIQD 102
           + +       +     
Sbjct: 133 QSLCRTFAPDVSWHIG 148


>gi|288927293|ref|ZP_06421140.1| ribosomal protein L11 methyltransferase [Prevotella sp. oral taxon
           317 str. F0108]
 gi|288330127|gb|EFC68711.1| ribosomal protein L11 methyltransferase [Prevotella sp. oral taxon
           317 str. F0108]
          Length = 280

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISSQHPNRLEIIQDD 103
            L G  +++ G G G L  +   LGA +V+  + D+      L +        + + + D
Sbjct: 140 PLKGKRILDCGCGTGILGIVAAKLGADRVLGYDVDEWSVDNSLHNADLNGVQNMAVRKGD 199

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           A  ++            ++AN+  NI    +  W+            +  +Q +V   + 
Sbjct: 200 ATTLN----AGDGQFDVVVANINRNILLADMPRWVQMMAQGGRI-VFSGFYQTDVPMLVE 254

Query: 164 A 164
           A
Sbjct: 255 A 255


>gi|261820511|ref|YP_003258617.1| methyltransferase small [Pectobacterium wasabiae WPP163]
 gi|261604524|gb|ACX87010.1| methyltransferase small [Pectobacterium wasabiae WPP163]
          Length = 248

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IG+G G L  ML        +V  +E D       K+  +  P  +R+ 
Sbjct: 43  APVSSTSRILDIGSGSGLLALMLAQRSEPHVRVDAVELDSAASQQAKENMAASPWADRVT 102

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +  +D +          +    I++N PY
Sbjct: 103 VYAEDIVDF---AAMRSTDYSLIVSNPPY 128


>gi|253990003|ref|YP_003041359.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781453|emb|CAQ84616.1| protein methyltranferase hemk (protein-glutamine n
           methyltransferase) [Photorhabdus asymbiotica]
          Length = 283

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 50  TVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            ++++G G G +   +       +V  ++ +         ++  +  +L+I   D L  +
Sbjct: 113 RILDLGTGTGAIALAIASERSDCQVTGVDINPDAV----MLAQGNAEKLKIQNVDFLNSN 168

Query: 109 FEKFFNISSPIRIIANLPY 127
           +    N      I++N PY
Sbjct: 169 WFSSLNNQQFDMIVSNPPY 187


>gi|222874483|gb|EEF11614.1| predicted protein [Populus trichocarpa]
          Length = 274

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPN 95
           + IA       G  V++IG G G L++ L  + GA  V  +    +     +  + Q P 
Sbjct: 2   RHIAAKLLVEPGHRVLDIGCGWGGLSRYLAEVAGAGHVTGVTLSGEQLAGARQRAGQSP- 60

Query: 96  RLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRL 133
                  D L    E + +        +   +  ++GTR 
Sbjct: 61  -----CADRLSYRLEDYRDTRGTFDRIVSVGMFEHVGTRF 95


>gi|163858639|ref|YP_001632937.1| tRNA (guanine-N(7)-)-methyltransferase [Bordetella petrii DSM
           12804]
 gi|163262367|emb|CAP44670.1| tRNA (guanine-N7-)-methyltransferase [Bordetella petrii]
          Length = 258

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
            ++   +  TV+EIG G G  TQ + L       + +E  +     +L+ I   +   L 
Sbjct: 78  AAAFGREAPTVLEIGFGMGETTQQIALARPGDNFLGVEVFNAGVGSLLRRIEESNLQNLR 137

Query: 99  IIQDDALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           I+Q DA++V  +                P     +    +        +++   P  +  
Sbjct: 138 IVQHDAVEVVRDMIAPDTLAGVHVYFPDPWPKKRHHKRRLIQPPFVALLASRIKPGGYIH 197

Query: 150 LTLLFQKEVGERI 162
               +Q+   + +
Sbjct: 198 CATDWQEYAVQML 210


>gi|119489671|ref|ZP_01622430.1| hypothetical protein L8106_13140 [Lyngbya sp. PCC 8106]
 gi|119454408|gb|EAW35557.1| hypothetical protein L8106_13140 [Lyngbya sp. PCC 8106]
          Length = 245

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNR 96
           +I + + S    TV+++G G G L + +LT     KV+ ++  +     +K+       +
Sbjct: 37  RIIQRAKSQVN-TVLDLGCGDGILGRTILTQYPHAKVVFLDFSEAMISAVKNKFQNSDYQ 95

Query: 97  LEIIQDDALKVDFEKFFNISSPIRII 122
           +  +  D  +  +  +        +I
Sbjct: 96  VNFVLGDFAQTSWVNWVQDFGKFDVI 121


>gi|126700067|ref|YP_001088964.1| ribosomal protein L11 methyltransferase [Clostridium difficile 630]
 gi|115251504|emb|CAJ69337.1| Ribosomal protein L11 methyltransferase (L11 Mtase) [Clostridium
           difficile]
          Length = 315

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                 V +IG G G L      LGA++V+ ++ D+    + K+  + ++    + ++  
Sbjct: 175 VNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKENVLENKVEKSVSVMHG 234

Query: 103 D 103
           +
Sbjct: 235 N 235


>gi|75910750|ref|YP_325046.1| methyltransferase [Anabaena variabilis ATCC 29413]
 gi|75704475|gb|ABA24151.1| methyltransferase [Anabaena variabilis ATCC 29413]
          Length = 261

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQH 93
            +++   +      TV+E+ +  G     L      KV+ +EK+       ++    +  
Sbjct: 33  TEQLCRWANFQPSETVLELASSFGYSAISLAQRYGVKVVGVEKNPDSVVRARENVRVAGL 92

Query: 94  PNRLEIIQDDALKVD 108
            N++EII+ D   +D
Sbjct: 93  ENQIEIIEGDIFHLD 107


>gi|15807265|ref|NP_295995.1| hypothetical protein DR_2274 [Deinococcus radiodurans R1]
 gi|6460083|gb|AAF11822.1|AE002060_1 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 253

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 12/205 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
             +    G  ++++G G G LT  L   G  +V  +E  +    + +         +  +
Sbjct: 31  ALANETPGCRLLDLGCGTGRLTTALARAG-HQVTGLEPARASLEVAQRKPGAEA--VCWL 87

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
           Q  A       F        +      +   + +   I     P     L+   +     
Sbjct: 88  QGSAQDAPTAAFDLCLMTAHVAQVFVEDDAWQDVLQHIHRALVPGG--RLSFDMRDPAAR 145

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220
                 ++    RL++L G  ++A    D+   +    P V+  V+HF  H   +P   +
Sbjct: 146 AWDTWDSAGKRERLTLLDG--SEAETWCDV---LDVAGPIVSGPVVHFAEHTRFLPGQ-D 199

Query: 221 SLKKITQEAFGKRRKTLRQSLKRLG 245
            L   ++  F +R   LR SL+  G
Sbjct: 200 VLTSTSRLRF-RREDELRASLQAAG 223


>gi|76803189|ref|YP_331284.1| S-adenosylmethionine-dependent methyltransferase 3 [Natronomonas
           pharaonis DSM 2160]
 gi|76559054|emb|CAI50652.1| homolog 11 to S-adenosylmethionine-dependent methyltransferase 3
           [Natronomonas pharaonis DSM 2160]
          Length = 261

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--------KDISSQHPNRLEII 100
             ++++G G G LT++L       V+  ++D      L                   +++
Sbjct: 33  ERILDVGCGEGALTRVLDEESPGTVVGCDRDPGLLVELSGPAVQGDAYQLPFADGSFDLV 92

Query: 101 QDDALKVDFEK 111
              AL V+  +
Sbjct: 93  VCQALLVNLPE 103


>gi|307721507|ref|YP_003892647.1| methyltransferase [Sulfurimonas autotrophica DSM 16294]
 gi|306979600|gb|ADN09635.1| methyltransferase [Sulfurimonas autotrophica DSM 16294]
          Length = 199

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 32/119 (26%)

Query: 3   MNNKSHSLKTILSHYK----IIPKK------------YMGQNFLLDLNILK-KIAESSGS 45
           M NK  + K I   YK    ++P K                 F    N L+  I ++   
Sbjct: 1   MKNKQLTKKIIAGKYKGKTLLLPSKTTTRSSKSIVLESF---F----NTLQFDIVDA--- 50

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDD 103
                 +E+ +G G++    L+ GA+K+  +EKD      LK +I+   PN  E+   D
Sbjct: 51  ----NFVEVFSGSGSIGLEALSRGAKKIYFMEKDSNAVKTLKQNIAQTDPNACEVFAGD 105


>gi|295703037|ref|YP_003596112.1| hypothetical protein BMD_0900 [Bacillus megaterium DSM 319]
 gi|294800696|gb|ADF37762.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
          Length = 283

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +      +V+EIG G GN T  +     +++  ++        L+  S    N L+ I+ 
Sbjct: 68  AFLNPTDSVMEIGPGWGNYTFSIADY-VKELTCMDCSPSIIRYLQTQSDARSN-LKFIEG 125

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
              K ++E+  +    +  I N  Y +   ++   ++ + 
Sbjct: 126 ---KWEYERLTDNYDAVVGI-NCFYRM-HNIVDGLLNMND 160


>gi|242373883|ref|ZP_04819457.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348437|gb|EES40039.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 312

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                +VI++G G G L+     +G +++  ++ D+    + K+   ++   N +E +  
Sbjct: 171 VKPTDSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVNVAKENFKKNHCENAIEAVPG 230

Query: 103 DALKVDFEKF 112
           + L+ + +KF
Sbjct: 231 NLLQDEDKKF 240


>gi|284036503|ref|YP_003386433.1| methyltransferase type 12 [Spirosoma linguale DSM 74]
 gi|283815796|gb|ADB37634.1| Methyltransferase type 12 [Spirosoma linguale DSM 74]
          Length = 255

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L+ + E+     G  +++I  G G     L  +G   V  ++   ++   L+  +     
Sbjct: 29  LELLVETLDFGPGDRLLDIFCGYGRHALPLARMG-TYVTGVDISSEYIAELQATAKAEKL 87

Query: 96  RLEIIQDDALKVDFEKFFNISS 117
            +  I+ D + V   +  + + 
Sbjct: 88  SVTAIEADFMAVTESEIGDAAG 109


>gi|224061951|ref|XP_002300680.1| predicted protein [Populus trichocarpa]
 gi|118485678|gb|ABK94689.1| unknown [Populus trichocarpa]
 gi|222842406|gb|EEE79953.1| predicted protein [Populus trichocarpa]
          Length = 364

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-D-QQFFPILKDISSQHPNRL 97
            +      G  ++++G G G   + +      KV+ I   D Q       +  +   +  
Sbjct: 116 VDLINVKPGDRILDVGCGVGGPMRAIAAHSRAKVVGITINDYQVNRARTHNKKAGLDSLC 175

Query: 98  EIIQDDALKVDFEK-FFNISSPIRIIANLP 126
           E++Q + L++ F +  F+ +  I    + P
Sbjct: 176 EVVQGNFLEMPFPENSFDGAYSIEATCHAP 205


>gi|163755904|ref|ZP_02163021.1| modification methylase (Eco47II, Sau96I) [Kordia algicida OT-1]
 gi|161324075|gb|EDP95407.1| modification methylase (Eco47II, Sau96I) [Kordia algicida OT-1]
          Length = 413

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNF--LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           K  +++  +S+Y++  K  + + F  LL  +   K+  S   L    V+E+ AG G L  
Sbjct: 31  KLEAVREPISNYRVYKKTQL-EMFSDLLSNDTEDKVDNSVIPLKDYRVLELFAGAGGLAI 89

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
            L   G + V + E D+     L++          +++ +    DF K+ +
Sbjct: 90  GLEKAGIKCVALNEIDKWACQTLRENRPDW----NVLEGNIKSFDFSKYKD 136


>gi|156048991|ref|XP_001590462.1| hypothetical protein SS1G_08202 [Sclerotinia sclerotiorum 1980]
 gi|154692601|gb|EDN92339.1| hypothetical protein SS1G_08202 [Sclerotinia sclerotiorum 1980
          UF-70]
          Length = 228

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 1  MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLD---GITVIEIGAG 57
          M   N +        +  I  +K  G     D  ++  + +S   L       V++IG+G
Sbjct: 1  MAPINPAA---DFYDNLGIRYEKSFG----HDEGLIAFVTDSLKLLPTSPDARVLDIGSG 53

Query: 58 PGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           G  T  L+    RK+  I+       +
Sbjct: 54 TGIPTSSLVVQSGRKLHGIDFSPVMIKL 81


>gi|88603247|ref|YP_503425.1| generic methyltransferase [Methanospirillum hungatei JF-1]
 gi|88188709|gb|ABD41706.1| generic methyltransferase [Methanospirillum hungatei JF-1]
          Length = 214

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 23  KYMGQNFLL--D-------LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           K   ++FL   D         I ++I  ++G   G T +++G GPG+L   L       V
Sbjct: 11  KKDSKHFLTIADTIFSPIYPVIAEQIVTNTGIHSG-TALDVGTGPGHLATALALASDCTV 69

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEII--QDDALKVDF 109
             ++       I +   S+      +I    D  ++ +
Sbjct: 70  HALDCSPDMIEICQTRVSEKGLTKRVIPALGDVSEIPY 107


>gi|83718399|ref|YP_442059.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia thailandensis
           E264]
 gi|167619000|ref|ZP_02387631.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia thailandensis
           Bt4]
 gi|257138241|ref|ZP_05586503.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia thailandensis
           E264]
 gi|123537315|sp|Q2SYE0|TRMB_BURTA RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|83652224|gb|ABC36287.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia thailandensis
           E264]
          Length = 265

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 41/140 (29%), Gaps = 17/140 (12%)

Query: 46  LDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
                V+EIG G G  T  +         I +E  +     +LK I  Q  + + IIQ D
Sbjct: 88  RRAPRVLEIGFGMGASTAEIAAHRPGDDFIGVEVHEPGVGALLKLIGEQQLSNIRIIQHD 147

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           A++V        S                   +    D W         L Q     ++ 
Sbjct: 148 AVEVLEHMIAPDSLDGA---------------HIFFPDPWHKARHHKRRLIQPPFVAQLA 192

Query: 164 AQKNSPHYGRLSVLTGWRTK 183
           A+     Y   +       +
Sbjct: 193 ARLKPGAYLHCATDWQNYAE 212


>gi|160944450|ref|ZP_02091678.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii
           M21/2]
 gi|225019542|ref|ZP_03708734.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum
           DSM 5476]
 gi|226325675|ref|ZP_03801193.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758]
 gi|261366542|ref|ZP_05979425.1| methyltransferase domain protein [Subdoligranulum variabile DSM
           15176]
 gi|283796490|ref|ZP_06345643.1| methyltransferase domain protein [Clostridium sp. M62/1]
 gi|290969249|ref|ZP_06560774.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|323141251|ref|ZP_08076150.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT
           12067]
 gi|331004537|ref|ZP_08328006.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|82470801|gb|ABB77439.1| unknown [Mitsuokella multacida]
 gi|82523583|emb|CAJ43595.1| hypothetical protein [Roseburia sp. A2-183]
 gi|94016157|emb|CAJ97449.1| hypothetical protein [Butyrivibrio fibrisolvens]
 gi|158444232|gb|EDP21236.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii
           M21/2]
 gi|224947687|gb|EEG28896.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum
           DSM 5476]
 gi|225205799|gb|EEG88153.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758]
 gi|282571357|gb|EFB76892.1| methyltransferase domain protein [Subdoligranulum variabile DSM
           15176]
 gi|290780755|gb|EFD93358.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|291075903|gb|EFE13267.1| methyltransferase domain protein [Clostridium sp. M62/1]
 gi|291530480|emb|CBK96065.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Eubacterium siraeum 70/3]
 gi|291557364|emb|CBL34481.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Eubacterium siraeum V10Sc8a]
 gi|295090343|emb|CBK76450.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Clostridium cf. saccharolyticum K10]
 gi|295100568|emb|CBK98113.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Faecalibacterium prausnitzii L2-6]
 gi|295115489|emb|CBL36336.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [butyrate-producing bacterium SM4/1]
 gi|322414290|gb|EFY05110.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT
           12067]
 gi|330410645|gb|EGG90069.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 255

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRQSQYAKQI 115

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 116 EFCVADA 122


>gi|152966704|ref|YP_001362488.1| methyltransferase type 12 [Kineococcus radiotolerans SRS30216]
 gi|151361221|gb|ABS04224.1| Methyltransferase type 12 [Kineococcus radiotolerans SRS30216]
          Length = 225

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           T +++G G G+L + L  L A  V  ++ D       + +S++  + ++    D L  D 
Sbjct: 42  TALDVGCGTGDLARRLA-LRAGHVTGLDVDPAGIDTARRLSARERD-VDFRCGDLLTADL 99

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
              +++ + + ++ ++P+    R L   ++    P     +  ++++E  
Sbjct: 100 PGGYDVVTALTVLHHVPFEPALRRLRQLLA----PGGTLLVIGVYREETA 145


>gi|313667027|gb|ADR72966.1| SAM-dependent methyltransferase [Streptomyces sp. OH-4156]
          Length = 245

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             S   LDG TV+++G G G  +  L   GAR V+ ++  +    +L+    +    +E 
Sbjct: 32  VSSHRPLDGRTVLDLGCGTGVSSFALAEAGAR-VVAVDASRPSLDMLEK--KRLDRDVEA 88

Query: 100 IQDDALKVDFEKFFNI 115
           ++ D   + F+  F++
Sbjct: 89  VEGDFRDLTFDSTFDV 104


>gi|313679575|ref|YP_004057314.1| hemolysin a [Oceanithermus profundus DSM 14977]
 gi|313152290|gb|ADR36141.1| hemolysin A [Oceanithermus profundus DSM 14977]
          Length = 245

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 41  ESSGSLDGITVI-EIGAGPGNLTQMLLTLGARKVIVIEKDQ-QFFPILKDISSQHPNRLE 98
            + G      V  ++GAG G  TQ+LL  GAR+V  ++    Q  P L+        R+ 
Sbjct: 73  AAFGIGPEGEVWADVGAGTGGFTQVLLEHGARRVYALDVGHGQLHPRLR-----ADARVV 127

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +++     V+  +   +  P+         I + L+   +     P     + +  Q E+
Sbjct: 128 VLEG----VNARRPLALPEPVDGAVMDVSFISSTLILPNLWRVLRPGGRALVLVKPQFEL 183


>gi|240167736|ref|ZP_04746395.1| methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 224

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          +   DG  V+EIG G GNL+  +     R V V   D     + +     
Sbjct: 42 AELADGQRVLEIGCGTGNLSIRIKRSHPR-VAVTGSDPDLLALARARRKA 90


>gi|258511660|ref|YP_003185094.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478386|gb|ACV58705.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 234

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQHP--NR 96
                     V+++ AG G  T  +      +  VI  D  +    + ++   +    +R
Sbjct: 41  RQLPLTPKSQVLDVAAGTGAWTFAIAKRLGPEGRVIGLDFTEAMLEVAEERRQRFTFRDR 100

Query: 97  LEIIQDDALKVDFEKF-FNISSPIRIIANLP 126
           ++ +  DA+ + F    F++ +    + N+P
Sbjct: 101 VQFVHGDAMNLPFPDNTFDLCTIGFALRNMP 131


>gi|187935464|ref|YP_001885212.1| spermidine synthase [Clostridium botulinum B str. Eklund 17B]
 gi|238691634|sp|B2TMY2|SPEE_CLOBB RecName: Full=Spermidine synthase; AltName: Full=Putrescine
           aminopropyltransferase; Short=PAPT; AltName: Full=SPDSY
 gi|187723617|gb|ACD24838.1| spermidine synthase [Clostridium botulinum B str. Eklund 17B]
          Length = 284

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 7/114 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLE-----IIQDD 103
            V+ IGAG G   + L       K+ ++E D++   + K    +   +LE     I+ +D
Sbjct: 78  NVLVIGAGDGGTIRELTRYKTIEKIDMVEIDERVVEVCKKYLPKTAGKLEEERVNIVYED 137

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            LK    K  N    I + +  P+  G  L       + +    E   L+ Q E
Sbjct: 138 GLKFVRNKE-NEYDLIIVDSTDPFGPGEGLFTKEFYGNCYKALSEDGILVNQHE 190


>gi|182436035|ref|YP_001823754.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178464551|dbj|BAG19071.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 257

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 10/106 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +       V+++  G G++T  LL          ++ D     I +       +R+  + 
Sbjct: 45  AVVGPEPRVLDLACGTGSITDRLLKRFPNATSTGVDLDPALLAIARGTFDG-DDRVAFVT 103

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            D          +     R+       + T    +W+  D     +
Sbjct: 104 AD--------LKDPDWTARLPHTSYDAVLTATALHWLHRDPLTTLY 141


>gi|218244975|ref|YP_002370346.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218165453|gb|ACK64190.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           +VIE+ AG G +   L   G +  +++E D+     L+      P    I+Q+D  K+DF
Sbjct: 74  SVIELFAGCGGMALGLENAGLKTELLVEIDRDCVNTLQKNRPYWP----ILQEDVTKIDF 129

Query: 110 EKF 112
             +
Sbjct: 130 RSY 132


>gi|172038708|ref|YP_001805209.1| hypothetical protein cce_3795 [Cyanothece sp. ATCC 51142]
 gi|171700162|gb|ACB53143.1| hypothetical protein cce_3795 [Cyanothece sp. ATCC 51142]
          Length = 255

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEII 100
           +    G T++E+ A  G     +      +V+ IEK+       ++   ++   N++ II
Sbjct: 39  ANFQPGETLLELAASFGESAIEIAKRYKVRVVGIEKNPDSVAKARENIKAAGLSNQITII 98

Query: 101 QDDALKVD 108
           + D   +D
Sbjct: 99  EGDIFHLD 106


>gi|239826101|ref|YP_002948725.1| methyltransferase type 11 [Geobacillus sp. WCH70]
 gi|239806394|gb|ACS23459.1| Methyltransferase type 11 [Geobacillus sp. WCH70]
          Length = 188

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 30  LLDLN---IL--KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           LLD     I+  ++  E         ++++GAG G  T  +  +   KV  ++  Q+   
Sbjct: 14  LLDPKRKEIIAPERAIEILQIGTQDVIVDLGAGNGYFTVPMAKMTKEKVYAVDVQQEMLE 73

Query: 85  ILKDISSQHP-NRLEIIQDDA 104
            LK  + +   + +E I +D 
Sbjct: 74  FLKTHAEKEQVDNIEYILEDV 94


>gi|170062547|ref|XP_001866716.1| HemK methyltransferase family member 1 [Culex quinquefasciatus]
 gi|167880450|gb|EDS43833.1| HemK methyltransferase family member 1 [Culex quinquefasciatus]
          Length = 328

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ-QFFPIL---KD 88
             +++ I +   +    + +EIG G G +T  LL     K   I  DQ +    L     
Sbjct: 137 EELVELILQQIDTQKEFSFLEIGCGSGAITLSLLKQVP-KATAIALDQSKLACELTLENA 195

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                  +L I +   +    ++         I++N PY    +L
Sbjct: 196 KRYDFSEKLRIFKHKLVDKLPDELAGHRF-DMIVSNPPYVPSGQL 239


>gi|90407141|ref|ZP_01215329.1| ribosomal protein L11 methyltransferase [Psychromonas sp. CNPT3]
 gi|90311717|gb|EAS39814.1| ribosomal protein L11 methyltransferase [Psychromonas sp. CNPT3]
          Length = 230

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L    +I+ G G G L    L LGA++VI I+ D Q     +D ++++   ++LE+   
Sbjct: 91  DLRDKVIIDFGCGSGILAIAALKLGAKRVIGIDIDPQAITASRDNATRNGVSDQLELYLA 150

Query: 103 DAL 105
           D L
Sbjct: 151 DDL 153


>gi|85373178|ref|YP_457240.1| S-adenosyl-methyltransferase MraW [Erythrobacter litoralis
          HTCC2594]
 gi|122545211|sp|Q2NCZ8|RSMH_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
          AltName: Full=16S rRNA m(4)C1402 methyltransferase;
          AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
          RsmH
 gi|84786261|gb|ABC62443.1| S-adenosyl-methyltransferase [Erythrobacter litoralis HTCC2594]
          Length = 315

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            +L ++  +     G  +++   G G  T+ LL  GA  V   ++D      
Sbjct: 9  PVLLDEVVAALDPQPGDVLVDATFGAGGYTRALLDSGA-TVHAFDRDPDAIAA 60


>gi|86151980|ref|ZP_01070193.1| putative sugar transferase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841088|gb|EAQ58337.1| putative sugar transferase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 411

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 25/147 (17%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            + Q+ L    I   I + S        +EI  G G+L   LL L     I    D    
Sbjct: 98  RLSQHILK---IKDSILKYS--KKSDIFLEIAPGQGDL---LLALSKEAQICYSIDP--- 146

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
             L D      N + +          + FF+ +   ++   + + I      + +     
Sbjct: 147 STLSDKYCICDNIIHV----------KSFFDKNIVYKLKHKINFII----FRHLLEHIDT 192

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPH 170
           P  +    +   +E G       N+  
Sbjct: 193 PLTFLQDVVDLLEENGMIYIEVPNAND 219


>gi|328543636|ref|YP_004303745.1| cyclopropane-fatty-acyl-phospholipid synthase (Cfa-like)
           [polymorphum gilvum SL003B-26A1]
 gi|326413380|gb|ADZ70443.1| Putative cyclopropane-fatty-acyl-phospholipid synthase (Cfa-like)
           [Polymorphum gilvum SL003B-26A1]
          Length = 409

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
           + +A ++    G  V+EIG G G   +         V  +   ++ F    +    +   
Sbjct: 182 RSLATAADIRPGHEVLEIGCGWGGFAEFAAREIGASVRALTISKEQFDYASERIFKAGLA 241

Query: 95  NRLEIIQDD 103
           +R++++  D
Sbjct: 242 DRVKVVFQD 250


>gi|330921831|ref|XP_003299580.1| hypothetical protein PTT_10610 [Pyrenophora teres f. teres 0-1]
 gi|311326671|gb|EFQ92321.1| hypothetical protein PTT_10610 [Pyrenophora teres f. teres 0-1]
          Length = 2589

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 9/128 (7%)

Query: 36   LKKIAESSGSLDGI---TVIEIGAGPGNLTQMLLTLGARKVIVIEK---D--QQFFPILK 87
            +++IA S+    G     ++E+GAG G  T+++L L A   I +E    D    F    +
Sbjct: 1963 IRRIAASTPQRPGQGPLKILEMGAGTGATTKVILPLLAELEIEVEFTFTDLAASFVAAAR 2022

Query: 88   DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
                  P  ++    D  KV  +   +    +     +       +    I     P   
Sbjct: 2023 KQFKHLP-FMKFRTHDIEKVPADDLLHSQHIVLASNAVHATRSLPIAATNIRKMLRPDGV 2081

Query: 148  ESLTLLFQ 155
              +  + +
Sbjct: 2082 LLMVEMTE 2089


>gi|305662621|ref|YP_003858909.1| methyltransferase small [Ignisphaera aggregans DSM 17230]
 gi|304377190|gb|ADM27029.1| methyltransferase small [Ignisphaera aggregans DSM 17230]
          Length = 198

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 60/137 (43%), Gaps = 10/137 (7%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD- 88
           +D    + + E+        V+++G G G +  ++  L  + +V +++ +++   + +  
Sbjct: 41  IDEGT-RLLIENLEIPSEGRVLDLGCGYGAIGIVVALLNPKLEVYMVDINREAVRLAERN 99

Query: 89  --ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
              +   P R++I Q +  +   +  FN      I +N PY+ G++++   I+       
Sbjct: 100 VIRNKIDPQRIKIFQGNLYEPVKDILFN-----AIYSNPPYSAGSQVIEELITQAPQHLK 154

Query: 147 WESLTLLFQKEVGERIT 163
              +  +  ++  E++ 
Sbjct: 155 TAGIIQIVARKGAEKVY 171


>gi|300118510|ref|ZP_07056249.1| methyltransferase [Bacillus cereus SJ1]
 gi|298724034|gb|EFI64737.1| methyltransferase [Bacillus cereus SJ1]
          Length = 258

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +++ +S  S+    +++IG G G  T+ L  +GA+ V+ ++  ++     K+  S   N 
Sbjct: 24  REMIKSITSIQNKRIVDIGCGGGIYTKELALMGAKSVVGLDFSKEILQAAKENCSGFSN- 82

Query: 97  LEIIQDDA 104
           +  +  DA
Sbjct: 83  ISFLHGDA 90


>gi|229084542|ref|ZP_04216814.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus Rock3-44]
 gi|228698763|gb|EEL51476.1| Methyltransferase, UbiE/COQ5 [Bacillus cereus Rock3-44]
          Length = 258

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +K+ +S  ++ G  + +IG G G  T+ L  +GA  ++ ++  ++     ++  +   N 
Sbjct: 24  RKMIQSIINVSGKNIADIGCGGGIYTKELSLMGANTIVGLDFSKEMLQAARENCASFQN- 82

Query: 97  LEIIQDDA 104
           +  I  DA
Sbjct: 83  ISFIHGDA 90


>gi|255656431|ref|ZP_05401840.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-23m63]
 gi|296450122|ref|ZP_06891883.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP08]
 gi|296878503|ref|ZP_06902508.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP07]
 gi|296260885|gb|EFH07719.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP08]
 gi|296430310|gb|EFH16152.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP07]
          Length = 315

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                 V +IG G G L      LGA++V+ ++ D+    + K+  + ++    + ++  
Sbjct: 175 VNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKENVLENKVEKSVSVMHG 234

Query: 103 D 103
           +
Sbjct: 235 N 235


>gi|254463444|ref|ZP_05076860.1| protein-L-isoaspartate O-methyltransferase [Rhodobacterales
           bacterium HTCC2083]
 gi|206680033|gb|EDZ44520.1| protein-L-isoaspartate O-methyltransferase [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 217

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           LL+   L K+ ++    +   V++IG+G G  +  ++   A+ V+ +E D+      + +
Sbjct: 61  LLEPRTLAKMLDALNLQNDELVLDIGSGYGY-SAAIIAHIAQAVVALEADEAMVADAQTV 119

Query: 90  SSQ 92
            S 
Sbjct: 120 LSD 122


>gi|199597828|ref|ZP_03211254.1| SAM-dependent methyltransferase [Lactobacillus rhamnosus HN001]
 gi|258540803|ref|YP_003175302.1| SAM-dependent methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|199591264|gb|EDY99344.1| SAM-dependent methyltransferase [Lactobacillus rhamnosus HN001]
 gi|257152479|emb|CAR91451.1| SAM-dependent methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 274

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 10/110 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPIL-------KD 88
           IA++     G  ++EIG G G+L+ +L         V   D   + +   L         
Sbjct: 34  IADAWQIQPGENILEIGCGQGDLSAVLADQVGPSGHVTGIDIASRDYGAPLTLGQAWDHL 93

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           ++    +RL +  D  L        N      ++A+  +   +   F  +
Sbjct: 94  LNGPLASRLTVHFDTNLAASLGPVANQHFDRIVMAHSLWYFASANAFALL 143


>gi|57639986|ref|YP_182464.1| protein-L-isoaspartate O-methyltransferase [Thermococcus
           kodakarensis KOD1]
 gi|57158310|dbj|BAD84240.1| protein-L-isoaspartate carboxylmethyltransferase, flame shift
           [Thermococcus kodakarensis KOD1]
          Length = 170

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + E +    G+ V+EIG G G    ++  L    V  IE+  +     +    +
Sbjct: 63  PHMVAIMLELADLKPGMNVLEIGTGSGWNAALISELVKTDVYTIERIPELVEFARRNLER 122

Query: 93  HP-NRLEIIQDDALK 106
                + +I  D  K
Sbjct: 123 AGVKNVHVILGDGTK 137


>gi|46109816|ref|XP_381966.1| hypothetical protein FG01790.1 [Gibberella zeae PH-1]
          Length = 2465

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 43   SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI-------EKDQQFFPILKDISSQHPN 95
            + S   + V+EIGAG G  T  LL   A    V+       +    FF   K   ++ PN
Sbjct: 1377 AHSKPNLRVLEIGAGTGGSTSQLLKYLAPVGKVLFSNYTYTDISSGFFESAKKRFNEFPN 1436

Query: 96   RLEIIQDDALKVDFEKFFNISSPIRIIAN 124
             +E    D  +   E+ F+      I+A 
Sbjct: 1437 -MEFATLDISRDPSEQGFDGREYDLILAT 1464


>gi|326776659|ref|ZP_08235924.1| Methyltransferase type 12 [Streptomyces cf. griseus XylebKG-1]
 gi|326656992|gb|EGE41838.1| Methyltransferase type 12 [Streptomyces cf. griseus XylebKG-1]
          Length = 253

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 10/106 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +       V+++  G G++T  LL          ++ D     I +       +R+  + 
Sbjct: 41  AVVGPEPRVLDLACGTGSITDRLLKRFPNATSTGVDLDPALLAIARGTFDG-DDRVAFVT 99

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            D          +     R+       + T    +W+  D     +
Sbjct: 100 AD--------LKDPDWTARLPHTSYDAVLTATALHWLHRDPLTTLY 137


>gi|295090901|emb|CBK77008.1| Dimethyladenosine transferase (rRNA methylation) [Clostridium cf.
           saccharolyticum K10]
          Length = 282

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL  +  ++K         G  V+EIGAG G  +  L   G R   V   D        +
Sbjct: 32  FLTTMRYIEK-----YIKPGDRVLEIGAGTGRYSHALAHRGYRVDAVELVDHNI-----E 81

Query: 89  ISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I   H      + I + +AL  D   F +    I ++    Y++ +
Sbjct: 82  IFRSHITPDENVSITRGNAL--DLSMFPDSQYDITLLLGPLYHLYS 125


>gi|292492029|ref|YP_003527468.1| tRNA (guanine-N(7)-)-methyltransferase [Nitrosococcus halophilus
           Nc4]
 gi|291580624|gb|ADE15081.1| tRNA (guanine-N(7)-)-methyltransferase [Nitrosococcus halophilus
           Nc4]
          Length = 243

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 11/146 (7%)

Query: 41  ESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           E+  +     ++EIG G G +L +       +  + IE        +L  + ++  + + 
Sbjct: 55  EAIFNRKAERILEIGFGNGDSLVEQARAAPEKDFLGIEVHRPGVGHLLLRLEAEGVDNIR 114

Query: 99  IIQDDALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           +I DDA KV                   P     +    +      + +     P  W  
Sbjct: 115 VICDDAWKVLQHHLPEQSLQGVQIFFPDPWPKKRHHKRRLIQPPFVDLLWHKLKPDGWVH 174

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLS 175
           L   +Q    + +      P +G L+
Sbjct: 175 LATDWQNYAAQMMAVLSQHPGFGNLA 200


>gi|290993196|ref|XP_002679219.1| predicted protein [Naegleria gruberi]
 gi|284092835|gb|EFC46475.1| predicted protein [Naegleria gruberi]
          Length = 369

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIE 77
          LK I E++       V+++GAG G L+       GA+KV  +E
Sbjct: 43 LKSIVENAHVFKDKIVMDVGAGTGILSLFAAKYGGAKKVYAVE 85


>gi|260574915|ref|ZP_05842917.1| magnesium protoporphyrin O-methyltransferase [Rhodobacter sp. SW2]
 gi|259022920|gb|EEW26214.1| magnesium protoporphyrin O-methyltransferase [Rhodobacter sp. SW2]
          Length = 222

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEI 99
                L G  V++ G G G +T  L   GA  V  ++       I +     QH  R+  
Sbjct: 53  RLPDDLTGARVLDAGCGTGLMTAELAARGAD-VTAVDISPALIDIAQSRLPDQHVARVRF 111

Query: 100 IQDDAL 105
              D L
Sbjct: 112 ASGDML 117


>gi|297480506|ref|XP_002691541.1| PREDICTED: tRNA methyltransferase 61 homolog B (S. cerevisiae) [Bos
           taurus]
 gi|296482372|gb|DAA24487.1| tRNA methyltransferase 61 homolog B [Bos taurus]
          Length = 500

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 15/120 (12%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD----- 88
           +  I        G TV+E G+G G ++  L        +VI  E  +    +        
Sbjct: 267 INMILSMMNIHPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEIRKDHHKLAMKNYRHW 326

Query: 89  -------ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                     + P+ ++ I  D L    E   +++     +  L   +   +LF  +   
Sbjct: 327 RDSWKISHVEEWPDNVDFIHKDILGAT-EDIQSLTFDAVALDMLNPQVALPVLFPNLKQG 385


>gi|239917235|ref|YP_002956793.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Micrococcus luteus NCTC 2665]
 gi|281414290|ref|ZP_06246032.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Micrococcus luteus NCTC 2665]
 gi|239838442|gb|ACS30239.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Micrococcus luteus NCTC 2665]
          Length = 280

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGA---RKVIVIEKDQQFFPIL-KDISSQHPNRLE 98
           + + DG  V+E+GAG G  T++L    A   R V  +E       +L ++I++    R+ 
Sbjct: 54  ADTADGADVVELGAGTGLFTRLLAARQADRVRTVTALEPSASMRAVLEREIAAGTGGRVR 113

Query: 99  IIQD 102
            +  
Sbjct: 114 AVPG 117


>gi|126733090|ref|ZP_01748845.1| N-6 Adenine-specific DNA methylase [Sagittula stellata E-37]
 gi|126706467|gb|EBA05549.1| N-6 Adenine-specific DNA methylase [Sagittula stellata E-37]
          Length = 153

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDI 89
            D  IL    ++     G TV+E+G G G     L        +  +E    +  + +  
Sbjct: 19  TDPVILAASVQA---CAGETVLELGCGGGAALCCLGWRVPGLTLTGLEIQPGYADLARRN 75

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            + +    EI + D             S   +IAN PY    + L   
Sbjct: 76  LAGNGLAGEIHEGDV--AAPPAALKARSFDHVIANPPYFETGKGLLAL 121


>gi|39935635|ref|NP_947911.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris CGA009]
 gi|192291216|ref|YP_001991821.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris TIE-1]
 gi|39649488|emb|CAE28010.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris CGA009]
 gi|192284965|gb|ACF01346.1| Cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris TIE-1]
          Length = 409

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ--QFFPILKDISSQHP 94
           +++AE+     G +V+EIG G G   +        +++ +   +  + F   +   +   
Sbjct: 182 QRLAEAIDLKPGQSVLEIGCGWGGFAEYAAKTFDVRLVGLTISREQRDFAQQRMFEAGLA 241

Query: 95  NRLEIIQDD 103
           +++EI   D
Sbjct: 242 DKVEIKLQD 250


>gi|313893547|ref|ZP_07827117.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441990|gb|EFR60412.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 199

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQ 92
           +L+++A S       T+I+ G+G G ++  +        I IE D++ +   ++   S  
Sbjct: 37  VLERLANSGHIRKKNTLIDYGSGKGRVSIFMAYQTGCHSIGIEYDERLYEKAVINGESPA 96

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             NR+  +  DA      +    +           +   R+L N   +    P    L  
Sbjct: 97  AHNRVSFVHGDAALY---ELPEQADRCFFFNPFALHTIKRVLGNIFDSLYHHPREIKLFF 153

Query: 153 LFQKEVGERI 162
            +  E  E  
Sbjct: 154 YYVNEEVENF 163


>gi|296268521|ref|YP_003651153.1| type 12 methyltransferase [Thermobispora bispora DSM 43833]
 gi|296091308|gb|ADG87260.1| Methyltransferase type 12 [Thermobispora bispora DSM 43833]
          Length = 260

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +      G +++EIG+G G+  +  L     +++V + D      L++  + H N
Sbjct: 52  DMVAPHVGRSMLEIGSGLGHFAEQFLPR-VDRLVVSDFDPYCVERLRERFAGHGN 105


>gi|269976671|ref|ZP_06183648.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1]
 gi|269935145|gb|EEZ91702.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1]
          Length = 247

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 49  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRQSQYAKQI 107

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 108 EFCVADA 114


>gi|317054443|ref|YP_004118468.1| methyltransferase type 12 [Pantoea sp. At-9b]
 gi|316952438|gb|ADU71912.1| Methyltransferase type 12 [Pantoea sp. At-9b]
          Length = 190

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 16/91 (17%)

Query: 27  QNFLLDLNILKKIA-----------ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKV 73
           Q F+        IA           ++        + E+GAG G LT+ LLT       +
Sbjct: 18  QEFIHHPRATGTIAPSSHHLCRVMSDAVDWQHVSRIAELGAGDGVLTRYLLTRMMDHASL 77

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              E + +     + +++   +RL ++ D A
Sbjct: 78  TAWETNPRLV---RKLAALDDHRLTVLADSA 105


>gi|296135436|ref|YP_003642678.1| tRNA (guanine-N(7)-)-methyltransferase [Thiomonas intermedia K12]
 gi|295795558|gb|ADG30348.1| tRNA (guanine-N(7)-)-methyltransferase [Thiomonas intermedia K12]
          Length = 236

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 17/140 (12%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
                V+EIG G G+ T  + +       I +E        +L+ I +   + L I+Q D
Sbjct: 62  RAAPRVLEIGFGMGDATAQIASTKPETDFIGVEVHPPGVGALLQRIDAAKLSNLRIVQHD 121

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           A++V      ++ +P  +              +    D WP        L Q E      
Sbjct: 122 AVQV----LRHMIAPHSLDG-----------LHIYFPDPWPKKRHHKRRLIQPEFVRLAI 166

Query: 164 AQKNSPHYGRLSVLTGWRTK 183
           ++     Y   +       +
Sbjct: 167 SRLRPGGYLHCATDWQPYAE 186


>gi|255101610|ref|ZP_05330587.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-63q42]
 gi|255307479|ref|ZP_05351650.1| ribosomal protein L11 methyltransferase [Clostridium difficile ATCC
           43255]
          Length = 315

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                 V +IG G G L      LGA++V+ ++ D+    + K+  + ++    + ++  
Sbjct: 175 VNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKENVLENKVEKSVSVMHG 234

Query: 103 D 103
           +
Sbjct: 235 N 235


>gi|254976044|ref|ZP_05272516.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-66c26]
 gi|255093432|ref|ZP_05322910.1| ribosomal protein L11 methyltransferase [Clostridium difficile CIP
           107932]
 gi|255315177|ref|ZP_05356760.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-76w55]
 gi|255517846|ref|ZP_05385522.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-97b34]
 gi|255650962|ref|ZP_05397864.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-37x79]
 gi|260684031|ref|YP_003215316.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           CD196]
 gi|260687691|ref|YP_003218825.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           R20291]
 gi|306520840|ref|ZP_07407187.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-32g58]
 gi|260210194|emb|CBA64402.1| putative ribosomal protein L11 methyltransferase [Clostridium
           difficile CD196]
 gi|260213708|emb|CBE05590.1| putative ribosomal protein L11 methyltransferase [Clostridium
           difficile R20291]
          Length = 315

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                 V +IG G G L      LGA++V+ ++ D+    + K+  + ++    + ++  
Sbjct: 175 VNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKENVLENKVEKSVSVMHG 234

Query: 103 D 103
           +
Sbjct: 235 N 235


>gi|41614961|ref|NP_963459.1| hypothetical protein NEQ165 [Nanoarchaeum equitans Kin4-M]
 gi|40068685|gb|AAR39020.1| NEQ165 [Nanoarchaeum equitans Kin4-M]
          Length = 208

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQH 93
           I   IA +     G  + ++G+G G L   L  +G  KV +IEKD +   IL K+     
Sbjct: 45  IAADIAWAIPI--GDEIADLGSGNGILGLALALVGWNKVYLIEKDPEQEEILYKNKELLG 102

Query: 94  PNRLEIIQDDA--LKVDFEKFFNISS 117
            N +EI+  D   L+++ E       
Sbjct: 103 LNNVEILIKDVGDLELNIENVIANPP 128


>gi|21223624|ref|NP_629403.1| methyltransferase [Streptomyces coelicolor A3(2)]
 gi|9968707|emb|CAC05962.1| methyltransferase [Streptomyces coelicolor A3(2)]
          Length = 269

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNR 96
            + E+        V+++  G G +T  LL          ++ D     I +   +   +R
Sbjct: 53  DMVEAL-VGPAPRVLDLACGTGTITARLLDRFPDATSTGVDLDPALLAIAEGTFAG-DDR 110

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +  +  D          +   P ++  +    + T    +W  A+     +  +  L 
Sbjct: 111 VSFVAAD--------LKDPDWPAKLPYDAYDAVLTATALHWFHAEPLADLYGRVAELV 160


>gi|114332454|ref|YP_748676.1| 3-demethylubiquinone-9 3-methyltransferase [Nitrosomonas eutropha
           C91]
 gi|114309468|gb|ABI60711.1| 3-demethylubiquinone-9 3-methyltransferase [Nitrosomonas eutropha
           C91]
          Length = 252

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-DQQF-FPILKDIS 90
           LN + +IA     LDG TV+++G G G L++ +   GAR V  I+  D+      L  + 
Sbjct: 59  LNYIDEIAG----LDGKTVVDVGCGGGILSESMAARGAR-VTGIDLSDKALKVAKLHLLE 113

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
           S H      I  +AL V+  + ++I + + ++ ++P
Sbjct: 114 SGHQVDYRKITVEALAVELPQHYDIVTCMEMLEHVP 149


>gi|268324410|emb|CBH37998.1| putative SAM dependent methyltransferase [uncultured archaeon]
          Length = 263

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 15/162 (9%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           +ILK+I +     D  TV+++GAG G     L       V V+E  ++    L   + ++
Sbjct: 46  SILKRIYKIFKFQDECTVLDVGAGTGAFAIPLAK-KVSAVTVVEPSKEMAQYLMKSADRN 104

Query: 94  P-NRLEII---QDDALKVDFEKFFNISSPIRIIANLPYNIGTR-LLFNWISADTWPPFWE 148
             N +E+I    +D  + D  ++      + + A   Y +  +  L   +       F  
Sbjct: 105 GLNNIEVITKRWEDISRDDLREY-----NVVLAARSYYMLDIKSALLKMLDVTKDILFLV 159

Query: 149 SLTLLFQKE-VGERITAQKNSPHYGRL-SVLTGW--RTKATM 186
           S    ++ E + +       +P Y  L +VL          +
Sbjct: 160 SHVANYEFEDINKNFNDYAPAPDYIYLYNVLYQMKIYANVEI 201


>gi|110681476|emb|CAL25348.1| arginine N-methyltransferase protein [Platanus x acerifolia]
          Length = 239

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQDDA 104
           G  V+++GAG G L+      GA+ V  +E   +     + + + +P+   R+ +++   
Sbjct: 24  GRVVVDVGAGSGILSLFAAQAGAKHVYAVEA-SEMAEYARRLIAGNPSLGQRITVVKGKV 82

Query: 105 LKVDFEKFFNI 115
            +V+  +  +I
Sbjct: 83  EEVELPEKADI 93


>gi|28895982|ref|NP_802332.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           SSI-1]
 gi|28811232|dbj|BAC64165.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 208

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           +  H +  + +              FL D  +  KK+ +        +    +   V+++
Sbjct: 22  DSLHDIHEVKVELLNHPFT------FLTDSGVFSKKMVDFGSQVLLETLNFKENERVLDL 75

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L  +      +++ + +   + +  ++ +   + I Q +  + +    F 
Sbjct: 76  GCGYGPLGISLAKVQRVDATLVDINNRALDLARKNATNNQVAVTIFQSNIYE-NISGHFE 134

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQK 156
                 II+N P   G R++ + I     +      LT++ QK
Sbjct: 135 -----HIISNPPIRAGKRVVHSIIEESIDFLVVNGDLTIVIQK 172


>gi|147669863|ref|YP_001214681.1| methyltransferase type 11 [Dehalococcoides sp. BAV1]
 gi|146270811|gb|ABQ17803.1| Methyltransferase type 11 [Dehalococcoides sp. BAV1]
          Length = 206

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q F  D  I +   E++          IGAG G LT  LL    R VI ++   Q   +L
Sbjct: 19  QGFFSD-RIREAALEAADVKPNSIAANIGAGTGYLTAGLLQKNCR-VIAVD---QSAAML 73

Query: 87  KDISSQHPNR-LEIIQDD 103
           + I S+   R +  +Q D
Sbjct: 74  EKIKSKFGVRNVSCLQAD 91


>gi|327265759|ref|XP_003217675.1| PREDICTED: hemK methyltransferase family member 1-like [Anolis
           carolinensis]
          Length = 430

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRL 97
                  G  ++E+G G G +   LL      KVI I+K +    + K+ + +     R+
Sbjct: 245 RLPPETHGPVILEVGCGSGAIALSLLKKLPHSKVIAIDKLEAAVNLTKENAERLNLQERV 304

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            ++  +     ++          II+N PY
Sbjct: 305 SVLHHEVSSSSWKYLLPWGLVDTIISNPPY 334


>gi|323456231|gb|EGB12098.1| hypothetical protein AURANDRAFT_61429 [Aureococcus anophagefferens]
          Length = 627

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           G   +EIGAG G LT ML       V+  E +     + +     H
Sbjct: 83  GAVALEIGAGTGLLTLMLCDQALGHVVACEMEPAMCALARAHLDAH 128


>gi|323144389|ref|ZP_08078997.1| RNA methyltransferase, RsmD family [Succinatimonas hippei YIT
           12066]
 gi|322415842|gb|EFY06568.1| RNA methyltransferase, RsmD family [Succinatimonas hippei YIT
           12066]
          Length = 192

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 30/122 (24%)

Query: 3   MNNKSHSLK-----------TILSHYKIIPKKYMGQNFLLDLNILKKIAESS-----GSL 46
           M+  SH ++            +L    + P                +I E+        +
Sbjct: 1   MSLSSHQIRIIGGIYKGKKLDVLDLEGLRP-------------TPDRIRETIFNLLSDKV 47

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDAL 105
               V+++ AG G L    L+ GA+ V +IEKD   +  LKD  +   ++ ++++  DAL
Sbjct: 48  QAANVLDLFAGSGALGIEALSRGAKSVTLIEKDYDNYLSLKDTINTLNSKNIQVLNLDAL 107

Query: 106 KV 107
             
Sbjct: 108 NF 109


>gi|313206496|ref|YP_004045673.1| methyltransferase type 12 [Riemerella anatipestifer DSM 15868]
 gi|312445812|gb|ADQ82167.1| Methyltransferase type 12 [Riemerella anatipestifer DSM 15868]
 gi|315023563|gb|EFT36567.1| Methyltransferase [Riemerella anatipestifer RA-YM]
 gi|325336058|gb|ADZ12332.1| Predicted O-methyltransferase [Riemerella anatipestifer RA-GD]
          Length = 235

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALK 106
           T +E+G G G ++ M+        +I I+ D+    + ++    S +  RL+ I  + ++
Sbjct: 42  TALEVGCGTGIISLMIAQRNPNCSIIAIDIDENASNLAQENFDNSVYQERLKSININFME 101

Query: 107 VDFEKFFNISSPIRIIANLPY 127
               + F++     I +N PY
Sbjct: 102 YQPNQKFDL-----IFSNPPY 117


>gi|297671241|ref|XP_002813754.1| PREDICTED: hemK methyltransferase family member 1-like [Pongo
           abelii]
          Length = 338

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS--QHPNRLE 98
           + GS     ++E+G G G ++  LL  L   +VI ++K +    +  + +   +  +R+ 
Sbjct: 154 AVGSPGSPLILEVGCGSGAISLSLLSQLPQSRVIAVDKGEAAISLTHENAQRLRLQDRIW 213

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           II  D                 +++N PY
Sbjct: 214 IIHLDMTSERSWTHLPWGPVDLVVSNPPY 242


>gi|291518471|emb|CBK73692.1| Predicted acetyltransferase [Butyrivibrio fibrisolvens 16/4]
          Length = 429

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           N + + A+         V+EIGAG G  +  L   G         D+    IL++ S   
Sbjct: 203 NYIHRFAD-----KNTKVLEIGAGTGRYSIALAKEGMNVTAAELVDKNL-EILREKSKGI 256

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            N L  +Q DA   +   F +    + ++    Y++
Sbjct: 257 SN-LRALQADA--TNLSMFEDNQFDVTLVFGPLYHL 289


>gi|268326446|emb|CBH40034.1| conserved hypothetical protein, SAM-dependent methyltransferase
           type 11 family [uncultured archaeon]
          Length = 276

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 22/202 (10%)

Query: 36  LKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +K+I E+ G L     V++I AGPG++T        +KV  +E  ++    L + + +  
Sbjct: 50  IKEIFETEGILKEDFEVLDIAAGPGSVTVPFAES-VKKVTAVEPAEEMCKRLIENAKKKG 108

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANL--PYNIGTRLL------FNWISADTWPP 145
              +EII     +V   +F N    +     L    NIG +L+        +        
Sbjct: 109 LENIEIINKKWEEVSDAEFENEFDLVVCSHALWQFPNIGEQLMRINRVSRAYCCIANGVR 168

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
             ++ + ++QK   +   +      +  L           M+  +          V S +
Sbjct: 169 SDKAFSEMYQKLGQDTDDSDHFIDSFNIL-HQRNILANVKMIDTVMRRS------VNSGI 221

Query: 206 IH----FIPHLNPIPCCLESLK 223
                    +  P    +E ++
Sbjct: 222 SMWELFLGKYREPTETDMEFIR 243


>gi|253701400|ref|YP_003022589.1| methyltransferase type 11 [Geobacter sp. M21]
 gi|251776250|gb|ACT18831.1| Methyltransferase type 11 [Geobacter sp. M21]
          Length = 286

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEII 100
                G+ V+++G G G  ++ L  L    VI +++  ++  + + +S +    +R+  +
Sbjct: 66  LDPAPGLLVLDVGCGLGGASRYLARLLDCHVIGVDQSPEYCNVARMLSERLGLSDRVAYL 125

Query: 101 QDDALKVDFEKFF 113
           Q DAL++ F +  
Sbjct: 126 QADALQLPFGEAA 138


>gi|167563784|ref|ZP_02356700.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia oklahomensis
           EO147]
 gi|167570923|ref|ZP_02363797.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia oklahomensis
           C6786]
          Length = 266

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +         I +E  +     +LK I  Q    + 
Sbjct: 85  DAIFGRRAPRVLEIGFGMGASTAEIAALRPDDDFIGVEVHEPGVGALLKLIGEQQLTNIR 144

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V                       +    +    D W         L Q   
Sbjct: 145 IIQHDAVEVLEHMIAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPF 189

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A+     Y   +       +
Sbjct: 190 VAQLAARLKPGAYLHCATDWQNYAE 214


>gi|139436978|ref|ZP_01771138.1| Hypothetical protein COLAER_00111 [Collinsella aerofaciens ATCC
           25986]
 gi|133776625|gb|EBA40445.1| Hypothetical protein COLAER_00111 [Collinsella aerofaciens ATCC
           25986]
          Length = 218

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
           G G L   +L+ GAR +   E D+   +      +   +   R  ++  D L        
Sbjct: 56  GSGALGIEMLSRGARSLTTFEIDRNAARLITKNIESLCRDRARWRVVTGDVLASASRGRV 115

Query: 114 NISSPIRIIANLPYNIGTRLLFNWISA 140
                  ++ + PY  G   +   +  
Sbjct: 116 PGGPFDLVLLDPPYAFGAMPVDELLQN 142


>gi|89054883|ref|YP_510334.1| methyltransferase type 12 [Jannaschia sp. CCS1]
 gi|88864432|gb|ABD55309.1| Methyltransferase type 12 [Jannaschia sp. CCS1]
          Length = 185

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
             +  ++A       G  V+E+GAG GN+TQ ++  G        IE + +F   L+  
Sbjct: 27 SRGLCAEMARELDPAKG-PVVELGAGTGNITQAIMDAGVAPEHCHSIEMNPEFCDRLRAR 85

Query: 90 SSQ 92
             
Sbjct: 86 FPG 88


>gi|50122208|ref|YP_051375.1| hypothetical protein ECA3286 [Pectobacterium atrosepticum SCRI1043]
 gi|81827048|sp|Q6D211|TRMN6_ERWCT RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|49612734|emb|CAG76184.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 248

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 60/213 (28%), Gaps = 39/213 (18%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP--NRLE 98
           +       V++IG+G G L  ML       V    +E D       K+ S+  P  +R+ 
Sbjct: 43  APVSSATRVLDIGSGSGLLALMLAQRSEPHVRIDAVELDSAASQQAKENSAASPWADRIT 102

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN-------------------IGTRLLFNWIS 139
           +  +D +     +  + S    II+N PY                    +   +L     
Sbjct: 103 VYAEDIVSFSAMRTADYS---LIISNPPYFPPGIACGSAQREQARYTTLLTHEVLLRCAH 159

Query: 140 ADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
               P     + L  Q  V E             + +             +S     P+ 
Sbjct: 160 QLLMPEGLFCVVLPVQ--VAEHF-----------IPLAQQHNWHVQQQLRVSEQEDKPAH 206

Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGK 232
           +V   +             +   ++     F +
Sbjct: 207 RVLLALSRQEKECVNFLLAIRDAERCYSTDFQQ 239


>gi|150017706|ref|YP_001309960.1| methyltransferase type 11 [Clostridium beijerinckii NCIMB 8052]
 gi|149904171|gb|ABR35004.1| Methyltransferase type 11 [Clostridium beijerinckii NCIMB 8052]
          Length = 249

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
                  G+ V+++G G G LT+ +  +GA  VI ++   +   I +    +    L  I
Sbjct: 26  NLLDIEKGMKVLDLGCGNGALTKKISDMGAD-VIGMDASGEMLEIARKNYPE----LTFI 80

Query: 101 QDDALKV 107
           QDDA+K 
Sbjct: 81  QDDAVKF 87


>gi|292487384|ref|YP_003530256.1| putative methyltransferase [Erwinia amylovora CFBP1430]
 gi|292898629|ref|YP_003537998.1| methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291198477|emb|CBJ45585.1| putative methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291552803|emb|CBA19848.1| putative methyltransferase [Erwinia amylovora CFBP1430]
 gi|312171489|emb|CBX79747.1| putative methyltransferase [Erwinia amylovora ATCC BAA-2158]
          Length = 195

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 14/87 (16%)

Query: 27  QNFLLDLN-----------ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKV 73
           Q F+ D             + + + ++      + V E+GAG G LT+ LL       ++
Sbjct: 16  QEFIADPRNTGTVAPSSRALCETMTDAVDWQHCLRVAELGAGEGVLTRHLLARMRADARL 75

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEII 100
           +  E + +F+P L +       RL+++
Sbjct: 76  LTFETNPRFYPGL-NAMQDRDARLQVV 101


>gi|312116297|ref|YP_004013893.1| methyltransferase type 11 [Rhodomicrobium vannielii ATCC 17100]
 gi|311221426|gb|ADP72794.1| Methyltransferase type 11 [Rhodomicrobium vannielii ATCC 17100]
          Length = 263

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
          F+ DL     I        G  V++IG G G LT  +   GA
Sbjct: 29 FVSDLG--ADILSWLDPKPGERVLDIGCGDGALTAKIAAHGA 68


>gi|296108842|ref|YP_003615791.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus infernus ME]
 gi|295433656|gb|ADG12827.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus infernus ME]
          Length = 178

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDD 103
                 V +IG+G G ++  +  L A+KV  I+ +++    LK+   +   +  EII   
Sbjct: 28  LSKDDIVADIGSGAGGMSVEIA-LRAKKVYSIDLNREAIENLKENLKKFNIKNCEIIHGK 86

Query: 104 A 104
           A
Sbjct: 87  A 87


>gi|152965852|ref|YP_001361636.1| methyltransferase type 11 [Kineococcus radiotolerans SRS30216]
 gi|151360369|gb|ABS03372.1| Methyltransferase type 11 [Kineococcus radiotolerans SRS30216]
          Length = 253

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQH 93
           +  ++ E      G   +++G GPG L   L   LGA  V  ++    F           
Sbjct: 21  LAARMVEHLDPAPGERALDVGCGPGALAAALVQRLGASAVAAVDPSPPFVAAAAARLPGV 80

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRI 121
              + I   + L  D   F   ++ + +
Sbjct: 81  D--VRIAAAELLPHDDHAFDLTAAQLAV 106


>gi|154497882|ref|ZP_02036260.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC
           29799]
 gi|150272872|gb|EDN00029.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC
           29799]
          Length = 255

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRQSQYAKQI 115

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 116 EFCVADA 122


>gi|19552425|ref|NP_600427.1| rRNA or tRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62390089|ref|YP_225491.1| rRNA or tRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|145295340|ref|YP_001138161.1| hypothetical protein cgR_1280 [Corynebacterium glutamicum R]
 gi|21323968|dbj|BAB98594.1| Predicted rRNA or tRNA methylase [Corynebacterium glutamicum ATCC
           13032]
 gi|25246523|gb|AAN72320.1| protoporphyrinogen oxidase [Corynebacterium glutamicum]
 gi|41325425|emb|CAF19905.1| Predicted rRNA or tRNA methylase [Corynebacterium glutamicum ATCC
           13032]
 gi|140845260|dbj|BAF54259.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 279

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           + +G ++   ++++  G G L   +   L    +  +E D       +    +   ++++
Sbjct: 104 QVAGDVEKRKIVDLCTGSGALAAYIGHALIDATLYAVELDPGAATWAQRNFDEFAPQVKL 163

Query: 100 IQDDALKVDFEKFFNISSPI-RIIANLPY 127
           I  D    D      +   I  +++N PY
Sbjct: 164 IHGDV--TDPTLLAEVHGTIDLVVSNPPY 190


>gi|329946776|ref|ZP_08294188.1| methyltransferase domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526587|gb|EGF53600.1| methyltransferase domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 187

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK--DISSQHPNRLE 98
           +++G      V+++G G G    ++L    R+V  I+   +     +  + ++    RL 
Sbjct: 22  KAAGIQPTDRVLDVGCGGGKAISLILKETRREVAGIDHSPEAVETARSVNRAAVASGRLR 81

Query: 99  IIQ 101
           +++
Sbjct: 82  VVE 84


>gi|325915832|ref|ZP_08178131.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537953|gb|EGD09650.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 418

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 31  LDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           ++ ++ +K+   +     +     V+++  G GN T  L     R+V+ +E D       
Sbjct: 251 VNASLNQKMIAHALALLDARPDDRVLDLFCGLGNFTLPLART-VREVVGVEGDAGLVARA 309

Query: 87  KDISSQH 93
           K+ + ++
Sbjct: 310 KENAQRN 316


>gi|313675595|ref|YP_004053591.1| protein-(glutamine-n5) methyltransferase, release factor-specific
           [Marivirga tractuosa DSM 4126]
 gi|312942293|gb|ADR21483.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Marivirga tractuosa DSM 4126]
          Length = 281

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 29  FLLDLNIL----------KKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIE 77
           FL++ N+L            I E+   L    V++IG G G +   +       +V  ++
Sbjct: 85  FLVNPNVLIPRRETEELVHLILENHPDLSEQMVVDIGTGSGIIPITIAKERKHCEVYAVD 144

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
                    K  +  +   +  IQ D L    E+   +      ++N PY +
Sbjct: 145 ISSSALATAKRNAQLNHANINFIQADIL----EEELELPKSNIWVSNPPYVL 192


>gi|313675525|ref|YP_004053521.1| protein-l-isoaspartate o-methyltransferase [Marivirga tractuosa DSM
           4126]
 gi|312942223|gb|ADR21413.1| protein-L-isoaspartate O-methyltransferase [Marivirga tractuosa DSM
           4126]
          Length = 215

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E      G  ++EIG G G    +L  LGAR V  IE  +  +   +    Q   +    
Sbjct: 74  ELLEVKQGDKILEIGTGSGYQACVLCELGAR-VYTIEYQKDLYERTRRFLPQMGYKPHFF 132

Query: 101 QDD 103
             D
Sbjct: 133 SGD 135


>gi|313127276|ref|YP_004037546.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
 gi|312293641|gb|ADQ68101.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
          Length = 236

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQHP 94
           + +A++     G T++E+G G G     L      +  V+  D       + +D   +  
Sbjct: 34  RAVADALALTPGDTIVEMGCGTGANFAYLRDRVGSEGTVVGVDFTPGVLAVARDRIRKKE 93

Query: 95  -NRLEIIQDDALK 106
              + +++ DA +
Sbjct: 94  WENVHVVRGDATR 106


>gi|307325284|ref|ZP_07604487.1| methylase [Streptomyces violaceusniger Tu 4113]
 gi|306889088|gb|EFN20071.1| methylase [Streptomyces violaceusniger Tu 4113]
          Length = 237

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI--LKDISSQHPNRLEIIQ 101
               G  V+++G G G L  +    GA +V  ++          L+      P  + ++ 
Sbjct: 47  DITAGTAVLDVGTGSGALALVAAGRGAAQVTAVDVSPLAVGATWLRARLKGLP--VRVLH 104

Query: 102 DDALKVDFEKFFNISSPIRIIANLPY 127
            D L     + F++     I+AN PY
Sbjct: 105 GDLLTPVAGRGFDL-----IVANPPY 125


>gi|284029522|ref|YP_003379453.1| Spermine synthase [Kribbella flavida DSM 17836]
 gi|283808815|gb|ADB30654.1| Spermine synthase [Kribbella flavida DSM 17836]
          Length = 689

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRL 97
            ++       V+ IGAG G    + L  GAR V  +E D +   I ++     P    R+
Sbjct: 283 RAAQKNP-ENVLIIGAGSGTDVAIALRNGARHVDAVEIDPRLRDIGREQHPDRPYQDPRV 341

Query: 98  EIIQDD 103
               DD
Sbjct: 342 TSHIDD 347


>gi|282848754|ref|ZP_06258149.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
 gi|282581540|gb|EFB86928.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
          Length = 199

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQ 92
           +L+++A S       T+I+ G+G G +T  +        I IE D++ +   ++   S  
Sbjct: 37  VLERLANSGHIRKKNTLIDYGSGKGRVTIFMAYQTGCHSIGIEYDERLYEKALINGESPA 96

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
             NR+  +  DA      +  + +           +   R+L N   +    P    L  
Sbjct: 97  TRNRVSFLLGDAALY---ELTDQADRCFFFNPFALHTIKRVLGNIFDSLYHHPREIKLFF 153

Query: 153 LFQKEVGERI 162
            +  E  E  
Sbjct: 154 YYVNEEVENF 163


>gi|261403589|ref|YP_003247813.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus vulcanius M7]
 gi|261370582|gb|ACX73331.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus vulcanius M7]
          Length = 180

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 48/160 (30%), Gaps = 16/160 (10%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-KDQQFFPILKDISSQHPNRLE 98
                      V++IG G G +T  +     + V  I+  D        +++ Q+  +  
Sbjct: 25  IGKLNLNKDDVVVDIGCGSGGMTVEIAKRC-KFVYAIDYLDDAI-----ELTQQNLAKFN 78

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           I     +K   E   +     ++  N  +  GT+ +   I           +      E 
Sbjct: 79  IKNCQIIKGRAEDVLD-----KLKFNKAFIGGTKNIEKIIEILDKKKINHIVANTIVLEN 133

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
             +I  +  +  Y   +V        +    I     F +
Sbjct: 134 AVKIINKLEAKGYNVNAVNVS----ISYAKKIPSGHMFLA 169


>gi|227328588|ref|ZP_03832612.1| hypothetical protein PcarcW_15134 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 248

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 55/181 (30%), Gaps = 39/181 (21%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP--NRLEIIQDDAL 105
            +++IG+G G L  ML      +V    +E D+      K+  +  P  +R+ +  +D +
Sbjct: 50  RILDIGSGSGLLALMLAQRSEPRVQIDAVELDRAASDQAKENVAASPWADRITVYAEDIV 109

Query: 106 KVDFEKFFNISSPIRIIANLPYN-------------------IGTRLLFNWISADTWPPF 146
                +  + S    II+N PY                    +    L         P  
Sbjct: 110 SFAETRAADYS---LIISNPPYFPPGIACGSVQRDQARYTTLLTHEALLRCAHQLLMPEG 166

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
              + L  Q  V E             L+    W         +S     P+ +V   + 
Sbjct: 167 LFCVVLPVQ--VAEHFI---------PLAQQNHWY--VHQQLRVSEQEEKPAHRVLLALS 213

Query: 207 H 207
            
Sbjct: 214 R 214


>gi|254383045|ref|ZP_04998400.1| O-methyltransferase [Streptomyces sp. Mg1]
 gi|194341945|gb|EDX22911.1| O-methyltransferase [Streptomyces sp. Mg1]
          Length = 544

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPI 85
            +++ ++ E      G  V+EIG G G  T +L    G  +V  +E D++    
Sbjct: 98  PSLVVRMLEDLAVEAGHRVMEIGTGTGYSTALLCHRLGDDQVTTVEVDEEISAH 151


>gi|167518964|ref|XP_001743822.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777784|gb|EDQ91400.1| predicted protein [Monosiga brevicollis MX1]
          Length = 634

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-----KVIVIEKDQQFFPI 85
           ++  +L +I ES        V+ +GAG G L Q  L   A      +V  +EK+      
Sbjct: 338 VEKALLDRIPESEAENTTAVVMVVGAGRGPLVQRTLDAAAEVGRQVRVYAVEKNPNAVIT 397

Query: 86  LKDIS-SQHPNRLEIIQDDALKVDFEKFFNI 115
           LK    ++  +R+ ++  D  +    +  +I
Sbjct: 398 LKHRKRTEWADRVTVVSQDMRRWQAPEQADI 428


>gi|148744081|gb|AAI42278.1| TRMT61B protein [Bos taurus]
          Length = 486

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 15/120 (12%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD----- 88
           +  I        G TV+E G+G G ++  L        +VI  E  +    +        
Sbjct: 244 INMILSMMNIHPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEIRKDHHKLAMKNYRHW 303

Query: 89  -------ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                     + P+ ++ I  D L    E   +++     +  L   +   +LF  +   
Sbjct: 304 RDSWKISHVEEWPDNVDFIHKDILGAT-EDIQSLTFDAVALDMLNPQVALPVLFPNLKQG 362


>gi|84393956|ref|ZP_00992696.1| hypothetical protein V12B01_08642 [Vibrio splendidus 12B01]
 gi|84375400|gb|EAP92307.1| hypothetical protein V12B01_08642 [Vibrio splendidus 12B01]
          Length = 242

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK 106
            V++IG G G L  M         +  I+ DQ           Q P  +R+ +     L 
Sbjct: 45  CVLDIGTGTGLLALMAAQRFEDASISAIDIDQHAIDAATVNIEQSPWQDRISLHHGSVLT 104

Query: 107 VDFEKFFNISSPIRIIANLPYNIG 130
            DF + F+      II N PY   
Sbjct: 105 TDFSQRFD-----AIICNPPYFNS 123


>gi|323344819|ref|ZP_08085043.1| N6-adenine-specific methyltransferase [Prevotella oralis ATCC
           33269]
 gi|323094089|gb|EFZ36666.1| N6-adenine-specific methyltransferase [Prevotella oralis ATCC
           33269]
          Length = 179

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFN 114
           G G++T  LL+ G   V+ +E D+     ++    +    N L +++ DA +        
Sbjct: 53  GTGSITLELLSRGCATVVSVEADRDHADFIRRCVDKLGAENSL-LVRGDAFRFLKSCHQQ 111

Query: 115 ISSPIRIIANLPYNI 129
                 I A+ PY +
Sbjct: 112 FD---FIFADPPYTL 123


>gi|289595708|ref|YP_003482404.1| methylase [Aciduliprofundum boonei T469]
 gi|289533495|gb|ADD07842.1| methylase [Aciduliprofundum boonei T469]
          Length = 177

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
               G  V+E+G G G +       G+  V+ ++ D++    L++ +     ++E    D
Sbjct: 16  NIRCGKKVLEVGTGNGAIAIECAKSGS-SVLAVDIDKEAVKRLREEAKIKNLKIETKVSD 74

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
             +    K+        II N PY  G       +       + + + L F  +V  +  
Sbjct: 75  LFENVDGKY------DTIIFNPPYLPGNPKDLKDLQWAGGGKYGDEVILKF-LDVAWKYL 127

Query: 164 AQKNSPHYGRLS 175
           A      Y  LS
Sbjct: 128 ADDGEI-YIILS 138


>gi|262190770|ref|ZP_06048997.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae CT
           5369-93]
 gi|262033355|gb|EEY51866.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae CT
           5369-93]
          Length = 208

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYIVARMTELLDLTPETKVLEIGTGSGYQTAVLAKL-VNHVFTVER----IKTLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D  + +    P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWQGWPARGPFDAI 145


>gi|242373895|ref|ZP_04819469.1| methyltransferase [Staphylococcus epidermidis M23864:W1]
 gi|242348449|gb|EES40051.1| methyltransferase [Staphylococcus epidermidis M23864:W1]
          Length = 239

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I ES        ++++G G G+LT  L+TLG    + +  D     +L  I+++  N + 
Sbjct: 26  IVESFSKQQINEILDLGCGTGSLTHRLVTLGHITGMDLSID-----ML-TIANEKSNNVR 79

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            ++ D    +  + FN+   I I  +    + T
Sbjct: 80  WLEGDMTDFNLNQKFNV---ITIFCDSLNYLST 109


>gi|229551453|ref|ZP_04440178.1| SAM-dependent methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|229315178|gb|EEN81151.1| SAM-dependent methyltransferase [Lactobacillus rhamnosus LMS2-1]
          Length = 274

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 10/110 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPIL-------KD 88
           IA++     G  ++EIG G G+L+ +L         V   D   + +   L         
Sbjct: 34  IADAWQIQPGENILEIGCGQGDLSAVLADQVGPSGHVTGIDIASRDYGAPLTLGQAWDHL 93

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           ++    +RL +  D  L        N      ++A+  +   +   F  +
Sbjct: 94  LNGPLASRLTVHFDTNLAASLGPVANQHFDRIVMAHSLWYFASANAFALL 143


>gi|296129849|ref|YP_003637099.1| tRNA (adenine-N(1)-)-methyltransferase [Cellulomonas flavigena DSM
           20109]
 gi|296021664|gb|ADG74900.1| tRNA (adenine-N(1)-)-methyltransferase [Cellulomonas flavigena DSM
           20109]
          Length = 349

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILK 87
           +I        G TV+E G G G LT  LL       +++ +E+ + F  I +
Sbjct: 104 QIVTMGDVFPGATVVEAGVGSGGLTLSLLRAVGDGGRLVSVERREDFAAIAR 155


>gi|291287502|ref|YP_003504318.1| Tellurite resistance methyltransferase, TehB, core [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884662|gb|ADD68362.1| Tellurite resistance methyltransferase, TehB, core [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 254

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISS 91
            ++++ I E    L G T+++IG G G  T  L  + A+ V   +  +    I+  D   
Sbjct: 34  DSVIEMIQEKGVPLKGKTILDIGCGTGRYTLRLAKI-AKDVTGTDISEDMLAIMDADARD 92

Query: 92  QHPNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +  + L+ I     +V+++++  +    +      P           +        +   
Sbjct: 93  EGLSNLKSI-----RVNWKEYTTDERWDVTFCTITPAVKTPEDFAKMVDYALENVVFLGW 147

Query: 151 TLLFQKEVGERITAQKN 167
               + E+   + A+  
Sbjct: 148 HGRVEPEMVMNVYAKFG 164


>gi|257785067|ref|YP_003180284.1| Methyltransferase type 11 [Atopobium parvulum DSM 20469]
 gi|257473574|gb|ACV51693.1| Methyltransferase type 11 [Atopobium parvulum DSM 20469]
          Length = 263

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 10/155 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILK 87
           +   I++ IA       G   +++G G G L   +        +V+  D+   ++    K
Sbjct: 79  MSRQIIEGIASYITIPAGGRGLDVGCGSGALAIAVAKKNPD-AMVVGIDRWGKEYASFSK 137

Query: 88  DISSQHPNRLEIIQ-----DDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
            +   +     +        DA+ ++FE + F+      +  N+P +    +L   +   
Sbjct: 138 TLCENNAKAESVTNTSFFPGDAVNLNFEDESFDAVFSNYVYHNIPSSNRQEILLETLRTL 197

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
                +    +  Q + G+           G  SV
Sbjct: 198 KKGGVFAIHDIFSQNKYGDMHAFLVTLKSMGYESV 232


>gi|159046078|ref|YP_001534872.1| Mg-protoporphyrin IX methyl transferase [Dinoroseobacter shibae DFL
           12]
 gi|157913838|gb|ABV95271.1| magnesium-protoporphyrin O-methyltransferase [Dinoroseobacter
           shibae DFL 12]
          Length = 227

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-HPNRLE 98
           A+    L G  V++ G G G +T  L   GA  V+ I+       I +      H  ++ 
Sbjct: 52  AQMPADLSGKRVLDAGCGAGQMTAELAARGAD-VVAIDISPSLVEIAEKRLPDAHRGQVT 110

Query: 99  IIQDD 103
               D
Sbjct: 111 FTSGD 115


>gi|170718905|ref|YP_001784076.1| methyltransferase [Haemophilus somnus 2336]
 gi|168827034|gb|ACA32405.1| putative methyltransferase [Haemophilus somnus 2336]
          Length = 200

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 1/111 (0%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106
               ++  AG G+L    L+  A+ V  +E D+     L    +        +I  ++L 
Sbjct: 58  DSNCLDCFAGSGSLGFEALSRQAKNVTFLELDKTIANQLNKNVAILKCTNANVINQNSLH 117

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
              +        I  I    Y          +    W      + +  ++E
Sbjct: 118 YLNKTQTEPHFDIVFIDPPFYFNLAEQAIKLLVQHNWLHANALIYVETERE 168


>gi|113460559|ref|YP_718623.1| methylase [Haemophilus somnus 129PT]
 gi|112822602|gb|ABI24691.1| 16S rRNA m(2)G-966 methyltransferase [Haemophilus somnus 129PT]
          Length = 200

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 1/111 (0%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106
               ++  AG G+L    L+  A+ V  +E D+     L    +        +I  ++L 
Sbjct: 58  DSNCLDCFAGSGSLGFEALSRQAKNVTFLELDKTIANQLNKNVAILKCTNANVINQNSLH 117

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
              +        I  I    Y          +    W      + +  ++E
Sbjct: 118 YLNKTQTEPHFDIVFIDPPFYFNLAEQAIKLLVQHNWLHANALIYVETERE 168


>gi|322378923|ref|ZP_08053339.1| putative O-methyltransferase [Helicobacter suis HS1]
 gi|322380243|ref|ZP_08054464.1| O-methyltransferase [Helicobacter suis HS5]
 gi|321147321|gb|EFX42000.1| O-methyltransferase [Helicobacter suis HS5]
 gi|321148665|gb|EFX43149.1| putative O-methyltransferase [Helicobacter suis HS1]
          Length = 238

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  ++++GAG G +  +     A  + +IE D         ++SQ+  + ++ Q + 
Sbjct: 27  IKKGDRLLDVGAGCGIVGILCAKKYANPLDLIEIDSNLA-FFARLNSQNLPQAQVYQANF 85

Query: 105 LKVDFEKFFNISSPIRIIANLPYN 128
           L       ++      I++N PY 
Sbjct: 86  LDYPLTPGYD-----AILSNPPYY 104


>gi|313220041|emb|CBY30905.1| unnamed protein product [Oikopleura dioica]
 gi|313234122|emb|CBY10191.1| unnamed protein product [Oikopleura dioica]
          Length = 280

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
             +KI  +     G  V+ +G G G    +++      V  I+       + +  ++++ 
Sbjct: 55  TTEKIVGNMNLQKGEKVLSVGCGIGGGEILMVKNYGVTVHAIDLSHNMLSVGRQRAAENE 114

Query: 94  -PNRLEIIQDDALKVDFEK 111
             N +     +AL  DFE+
Sbjct: 115 ISNEITFEHANALIRDFEE 133


>gi|312136740|ref|YP_004004077.1| RNA methylase [Methanothermus fervidus DSM 2088]
 gi|311224459|gb|ADP77315.1| putative RNA methylase [Methanothermus fervidus DSM 2088]
          Length = 343

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           LD  I + +   +    G  +++   G G +      +G  KVI  + D++      +  
Sbjct: 171 LDPKIARCMVNLARVKKGEKILDPFCGAGGVLIEAGMIGI-KVIGCDIDKKMVKGAIENL 229

Query: 91  SQHPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
                +  ++ Q+DA K+  ++  +      I+ + PY I T
Sbjct: 230 KYFGIKDFKVFQEDARKIKLKEKVD-----AIVTDPPYGIST 266


>gi|302343102|ref|YP_003807631.1| methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
 gi|301639715|gb|ADK85037.1| Methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
          Length = 299

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 57/179 (31%), Gaps = 20/179 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++ ++  +     G +V+++G GPG L   L   GAR V  ++        LK  S    
Sbjct: 71  VVDELLANGVVGPGASVLDVGCGPGTLAIPLAKAGAR-VTALDNSAGMLAALKRQSFSQQ 129

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL- 153
             +  I  +      +      S + +    P  +    L      ++W     +LTL  
Sbjct: 130 LEITTINSN----WRDHRPARKSALALAGFFPPALSPEGLARL---ESWSSGHCALTLGT 182

Query: 154 ------FQKEVGERITAQKNSPHYGRLSVLTGWRTKAT-----MMFDISPHVFFPSPKV 201
                 F++E+   +           LS    +   A           +     P  KV
Sbjct: 183 GHEPYEFRRELWGEVLQMPFHKGSHHLSCAVNYLIAAERRPNLRHLHWTSRFCQPVEKV 241


>gi|299752168|ref|XP_001830750.2| arginine methyltransferase [Coprinopsis cinerea okayama7#130]
 gi|298409708|gb|EAU91119.2| arginine methyltransferase [Coprinopsis cinerea okayama7#130]
          Length = 350

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I  +     G TV+++G G G L+      GA+ V  I+ 
Sbjct: 61  IVNNPHLFKGKTVLDVGCGTGILSMFAAKAGAKHVTGIDM 100


>gi|283835493|ref|ZP_06355234.1| protein-L-isoaspartate O-methyltransferase [Citrobacter youngae
           ATCC 29220]
 gi|291068694|gb|EFE06803.1| protein-L-isoaspartate O-methyltransferase [Citrobacter youngae
           ATCC 29220]
          Length = 208

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKSLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMMQL 162


>gi|241762288|ref|ZP_04760369.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373191|gb|EER62821.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 332

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ E+   ++G   I+   G G  ++ +L     +VI  ++D         +  +
Sbjct: 12  PVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGASLVEK 71

Query: 93  HPNRLEIIQDDA 104
           +  RL ++ D  
Sbjct: 72  YKGRLRLVNDCF 83


>gi|238787407|ref|ZP_04631206.1| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia
           frederiksenii ATCC 33641]
 gi|238724669|gb|EEQ16310.1| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia
           frederiksenii ATCC 33641]
          Length = 378

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 24/122 (19%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNI--------------------LKKIAESS 43
           NN+    + I +HY +       Q FL    +                    ++++ E  
Sbjct: 100 NNRRQVRRNIAAHYDLG--NSFYQQFLDSEMLYSSALYRETPMTLEQAQQAKMRRLCEQL 157

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
                  ++EIG G G L +        +V      ++ +   +     +    R+ ++ 
Sbjct: 158 DLQPEDHLLEIGTGWGALAEFAAREYGCRVTTTTISREQYDYAQQRIKQAGLGERVTLLF 217

Query: 102 DD 103
           +D
Sbjct: 218 ED 219


>gi|197334549|ref|YP_002155201.1| methyltransferase [Vibrio fischeri MJ11]
 gi|262828790|sp|B5F9T8|TRMN6_VIBFM RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|197316039|gb|ACH65486.1| methyltransferase [Vibrio fischeri MJ11]
          Length = 234

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEII 100
              +   +++IGAG G L+ M     +   +  IE       + +   SQ P   RL +I
Sbjct: 33  NISECSQILDIGAGTGLLSLMSAQRNSNAHIDAIELMPIAAEVARLNFSQSPWKERLVLI 92

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
             D L       ++      II N PY
Sbjct: 93  HQDFLSYQTAYEYD-----AIICNPPY 114


>gi|126463164|ref|YP_001044278.1| methyltransferase small [Rhodobacter sphaeroides ATCC 17029]
 gi|126104828|gb|ABN77506.1| methyltransferase small [Rhodobacter sphaeroides ATCC 17029]
          Length = 253

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           A +  +  G +V+E+G G G  +  L       ++  +E    +  + ++ ++ +   LE
Sbjct: 36  AAAVPASAGQSVLELGCGAGVASLCLAARVPGLRLAGLELQPAYAALARENAALNGVALE 95

Query: 99  IIQDD--ALKVDFEKFFNISSPIRIIANLPYN 128
           +++ D  A+     + F+      +IAN PY 
Sbjct: 96  VVEGDLSAMPAALRQSFD-----HVIANPPYY 122


>gi|75675965|ref|YP_318386.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrobacter winogradskyi Nb-255]
 gi|123613316|sp|Q3SRQ7|PIMT_NITWN RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|74420835|gb|ABA05034.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrobacter winogradskyi Nb-255]
          Length = 217

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  + E     D   V+EIG G G  T  +L+   R+V+ +E+ +      +     
Sbjct: 66  PFVVAYMTERLELGDDQRVLEIGTGSGYQT-AILSRLCREVVTVERYRVLADRARARLKH 124

Query: 93  H-PNRLEIIQDDALKVDFEKFFNISSPIRIIANL---PYNIGTRL 133
              + +E++  D    D          I + A +   P  +  RL
Sbjct: 125 LGYDNVEVLLGDG--FDIPGEAGRFDRIMVTAAMEQIPEALTARL 167


>gi|45358117|ref|NP_987674.1| SAM-binding motif-containing protein [Methanococcus maripaludis S2]
 gi|44920874|emb|CAF30110.1| SAM (and some other nucleotide) binding motif [Methanococcus
           maripaludis S2]
          Length = 200

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 21/126 (16%)

Query: 19  IIPKKYMGQNFLLDLNILKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
             PKK       +D   +  I  E         V+++G G G +   +       V + +
Sbjct: 35  FSPKK-------IDKGTI--ILVEELELSKDDDVLDVGCGYGVIGISIADE-VNSVTMTD 84

Query: 78  KDQQFFPILK---DISSQHPNRLEIIQDD-ALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            + +   + +    ++ +    +E+ Q D   KV+ +K+        II+N P   G  L
Sbjct: 85  LNNRSVGLTRKNIKLNGKSEKNIEVFQGDLFEKVNNKKYS------VIISNPPIKAGKEL 138

Query: 134 LFNWIS 139
           +   IS
Sbjct: 139 IHKIIS 144


>gi|113969137|ref|YP_732930.1| methyltransferase small [Shewanella sp. MR-4]
 gi|122944086|sp|Q0HM44|TRMN6_SHESM RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|113883821|gb|ABI37873.1| methyltransferase small [Shewanella sp. MR-4]
          Length = 236

 Score = 37.9 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +   +   +++IGAG G L+ M       ++  +E +++     +   +Q P   R +++
Sbjct: 30  APLAEAKNILDIGAGSGLLSLMAAQRSQGQITAVELEEKAAAACRYNMTQSPWAKRCQLV 89

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
             D   V     +       II N PY
Sbjct: 90  HGDIQSVCQLAQYQGYF-DHIICNPPY 115


>gi|329939721|ref|ZP_08289022.1| methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329301291|gb|EGG45186.1| methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 255

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
             V+++  G G +T  LL          ++ D     I +        R+  ++ D    
Sbjct: 49  PRVLDLACGTGTITARLLARFPEATSTGVDLDPALLTIARGTFEG-DGRVTFVEAD---- 103

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                 +   P R+  +    + T    +W+        +  L  L ++
Sbjct: 104 ----LKDPHWPERLPHDSYDAVLTATALHWLHKGPLAELYGRLAGLVRE 148


>gi|320449902|ref|YP_004201998.1| ribosomal RNA large subunit methyltransferase J [Thermus
           scotoductus SA-01]
 gi|320150071|gb|ADW21449.1| ribosomal RNA large subunit methyltransferase J [Thermus
           scotoductus SA-01]
          Length = 244

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 11/114 (9%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDDAL 105
           +G    +IGA  G  TQ+LL  GAR+V  ++  +    P L++        + + + DA 
Sbjct: 76  EGKVAADIGASTGGFTQVLLERGARRVYAVDVGRDQLHPRLRE----DSRVVSLEEQDA- 130

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
                +   +  P+ ++      I + LL + +     P     + +  Q E+G
Sbjct: 131 -----RSLLLPEPVDLVVMDVSFISSTLLLSKVKELLKPGGEALILVKPQFELG 179


>gi|313247390|emb|CBY15641.1| unnamed protein product [Oikopleura dioica]
          Length = 345

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--P 94
             I  +        V++IG G G ++    + GA+KVI I+         KDI  ++   
Sbjct: 50  NSIIRNKHLFRNKVVLDIGCGTGMMSLFAASAGAKKVIGIDM-SAIVERAKDIVKENDLD 108

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRII 122
           + + II+    KV+  +  +    + +I
Sbjct: 109 DVITIIKG---KVEEVELPDGIEKVDVI 133


>gi|298369777|ref|ZP_06981094.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria sp. oral
          taxon 014 str. F0314]
 gi|298282334|gb|EFI23822.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria sp. oral
          taxon 014 str. F0314]
          Length = 238

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 1  MTMNNKSHSLKTILSHYKIIPKKYMGQN--F--LLD-----LNILKKIAESSGSLDGITV 51
          MT  N+ +     ++ +  I  K+  +N  F  L D     LN + ++A     L G  V
Sbjct: 1  MTAENQRNVDDDEIAKFSQIADKWWDKNGEFKPLHDINPLRLNYIDRLA----PLAGKRV 56

Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEK 78
          +++G G G L++ +   GA  V  I+ 
Sbjct: 57 LDVGCGGGILSESMAKRGAAHVTGIDM 83


>gi|297833466|ref|XP_002884615.1| arginine N-methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330455|gb|EFH60874.1| arginine N-methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
            G  V+++GAG G L+      GA+ V  +E   +     + + + +P    R+ +I+ 
Sbjct: 180 AGRVVVDVGAGSGILSMFAAQAGAKHVYAVEA-SEMAEYSRKLIAGNPLFAERITVIKG 237


>gi|293189296|ref|ZP_06608019.1| ubiquinone/menaquinone biosynthesis methyltransferase [Actinomyces
           odontolyticus F0309]
 gi|292821759|gb|EFF80695.1| ubiquinone/menaquinone biosynthesis methyltransferase [Actinomyces
           odontolyticus F0309]
          Length = 200

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G TV+E   G G ++  +    AR V+  +  +      +   ++H N + + Q D 
Sbjct: 33  IRPGDTVLECACGTGAISAAIAPACAR-VVATDYSEGMLKQARKKLAKHSN-VTVEQADI 90


>gi|291569835|dbj|BAI92107.1| probable glycosyl transferase [Arthrospira platensis NIES-39]
          Length = 2556

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 3/122 (2%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
              ++I +   S     V+EIG G G L + L     R V  ++  +      K   +  
Sbjct: 562 RTTQQILQGLPSQPHWKVLEIGCGVGRLIKPLRERFNR-VDGVDISENMIEFAKQYLADG 620

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            +  E+  ++    D +        +     +  +I +  +     ++ +          
Sbjct: 621 QSNGELYVNNG--SDLQDLPGEFYDLVYSTIVFQHIRSLSVVKSYFSEIFRVLKPGGYFR 678

Query: 154 FQ 155
            Q
Sbjct: 679 IQ 680


>gi|284051709|ref|ZP_06381919.1| glycosyl transferase group 1 [Arthrospira platensis str. Paraca]
          Length = 1644

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 3/122 (2%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
              ++I +   S     V+EIG G G L + L     R V  ++  +      K   +  
Sbjct: 562 RTTQQILQGLPSQPHWKVLEIGCGVGRLIKPLRERFNR-VDGVDISENMIEFAKQYLADG 620

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            +  E+  ++    D +        +     +  +I +  +     ++ +          
Sbjct: 621 QSNGELYVNNG--SDLQDLPGEFYDLVYSTIVFQHIRSLSVVKSYFSEIFRVLKPGGYFR 678

Query: 154 FQ 155
            Q
Sbjct: 679 IQ 680


>gi|304316723|ref|YP_003851868.1| O-methyltransferase family 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778225|gb|ADL68784.1| O-methyltransferase family 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 213

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILK--DIS 90
             L+ I +         ++EIG   G  + ++L      KV+ IEKD     + K   I 
Sbjct: 41  RFLETIVK---IKQPQNILEIGTAIGYSSIIMLKAYKNAKVLTIEKDIDMAEMAKINFIK 97

Query: 91  SQHPNRLEIIQDDALKV 107
           +   +R+E+++ DAL+V
Sbjct: 98  ASLIDRVELVKGDALEV 114


>gi|256391514|ref|YP_003113078.1| precorrin-6Y C5,15-methyltransferase [Catenulispora acidiphila DSM
           44928]
 gi|256357740|gb|ACU71237.1| precorrin-6Y C5,15-methyltransferase [Catenulispora acidiphila DSM
           44928]
          Length = 428

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I   I        G  V EI AG G L      LGA  VI +E+D      +   +  H 
Sbjct: 268 IRALILARLAPRLGAMVWEIAAGAGALAVECARLGA-AVIAVERDPDACERISLNAVMHG 326

Query: 95  NRLEIIQDDA 104
             +E++   A
Sbjct: 327 VDVEVVSGQA 336


>gi|166712783|ref|ZP_02243990.1| hypothetical protein Xoryp_15350 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 356

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +     GA    V     Q   IL+    +  + +++I
Sbjct: 126 AELADGQRILELGCGWGSLTLWMAERYPGASITAVSNSRPQRAHILEQCRVRGLSNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPY 127
             D  AL +    F  + S         Y
Sbjct: 186 TADVNALALPPGSFDRVVSVEMFEHMRNY 214


>gi|163853659|ref|YP_001641702.1| protein-L-isoaspartate O-methyltransferase [Methylobacterium
           extorquens PA1]
 gi|209573197|sp|A9VY77|PIMT_METEP RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|163665264|gb|ABY32631.1| protein-L-isoaspartate O-methyltransferase [Methylobacterium
           extorquens PA1]
          Length = 228

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             I+  + E+     G  V+E+GAG G    +L  +G  +V  IE+
Sbjct: 76  PYIVALMIEALALRPGDRVLEVGAGCGYAAAVLARMGV-QVFAIER 120


>gi|118464509|ref|YP_884087.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium avium 104]
 gi|152061090|sp|A0QME9|TRMB_MYCA1 RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|118165796|gb|ABK66693.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium avium 104]
          Length = 259

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 46/158 (29%), Gaps = 23/158 (14%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDD 103
                V+EIG G G  T  +        VI +E  ++    +L  I   +   + +I+ +
Sbjct: 84  RKAPVVLEIGCGNGTSTLAMAKQEPGVDVIAVEVYRRGLAQLLCAIDRDNVTNIRLIRGN 143

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           AL V       + +P  +                   D WP          Q      I 
Sbjct: 144 ALDV----LQRLIAPASLTG-----------VRVFFPDPWPKARHHKRRFLQPGTVGLIA 188

Query: 164 AQ--KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +        G L V T     A  + D+        P
Sbjct: 189 DRLLPG----GVLHVATDHAGYAEHIADVGAGEPRLRP 222


>gi|111219795|ref|YP_710589.1| putative s-adenosylmethionine transferase [Frankia alni ACN14a]
 gi|111147327|emb|CAJ58977.1| putative s-adenosylmethionine transferase [Frankia alni ACN14a]
          Length = 267

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 45  SLDGITVIEIGAGPG-NLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +  TV+E+G G G  L +++  LG  +V   +  D+     L   +++   R EI   
Sbjct: 49  PREARTVLEVGCGTGQVLDRLVGHLGTDQVERAVGIDRS--AYLARRAAERFGRFEIFAA 106

Query: 103 DALKVDFEK 111
           D  +V    
Sbjct: 107 DGTQVPLPD 115


>gi|56551719|ref|YP_162558.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|59803046|sp|Q9REQ9|RSMH_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56543293|gb|AAV89447.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 332

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ E+   ++G   I+   G G  ++ +L     +VI  ++D         +  +
Sbjct: 12  PVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGASLVEK 71

Query: 93  HPNRLEIIQDDA 104
           +  RL ++ D  
Sbjct: 72  YKGRLRLVNDCF 83


>gi|322377484|ref|ZP_08051975.1| ribosomal protein L11 methyltransferase [Streptococcus sp. M334]
 gi|321281684|gb|EFX58693.1| ribosomal protein L11 methyltransferase [Streptococcus sp. M334]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|315613655|ref|ZP_07888562.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           ATCC 49296]
 gi|315314346|gb|EFU62391.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           ATCC 49296]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|309799317|ref|ZP_07693563.1| ribosomal protein L11 methyltransferase [Streptococcus infantis
           SK1302]
 gi|308117057|gb|EFO54487.1| ribosomal protein L11 methyltransferase [Streptococcus infantis
           SK1302]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|307705459|ref|ZP_07642314.1| ribosomal protein L11 methyltransferase [Streptococcus mitis SK597]
 gi|307620994|gb|EFO00076.1| ribosomal protein L11 methyltransferase [Streptococcus mitis SK597]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|307707103|ref|ZP_07643900.1| ribosomal protein L11 methyltransferase [Streptococcus mitis SK321]
 gi|307617629|gb|EFN96799.1| ribosomal protein L11 methyltransferase [Streptococcus mitis SK321]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|307707511|ref|ZP_07643993.1| ribosomal protein L11 methyltransferase [Streptococcus mitis NCTC
           12261]
 gi|307616463|gb|EFN95654.1| ribosomal protein L11 methyltransferase [Streptococcus mitis NCTC
           12261]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|306824714|ref|ZP_07458058.1| ribosomal protein L11 methyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432925|gb|EFM35897.1| ribosomal protein L11 methyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|306829962|ref|ZP_07463149.1| ribosomal protein L11 methyltransferase [Streptococcus mitis ATCC
           6249]
 gi|304427973|gb|EFM31066.1| ribosomal protein L11 methyltransferase [Streptococcus mitis ATCC
           6249]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|294023725|ref|YP_003547044.1| putative methylase/helicase [Sphingobium japonicum UT26S]
 gi|292677505|dbj|BAI99021.1| putative methylase/helicase [Sphingobium japonicum UT26S]
          Length = 1422

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A ++  L    V+E  AG G L   L       V + E D Q   +L+ +  Q   R   
Sbjct: 131 ARAAHILPSDLVLEPSAGTGMLAAWLPRDIP--VHLNEIDPQRAALLEGVLGQIVTRY-- 186

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
              DA +   +    +  P  I+ N PY+  T
Sbjct: 187 ---DA-EYIDDLLSPVVRPSVILINPPYSRST 214


>gi|284045682|ref|YP_003396022.1| methyltransferase type 11 [Conexibacter woesei DSM 14684]
 gi|283949903|gb|ADB52647.1| Methyltransferase type 11 [Conexibacter woesei DSM 14684]
          Length = 274

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 19/129 (14%)

Query: 38  KIAESSGSLDGITVIEIGAGPGN----------------LTQMLLTLGARKVIVIEKDQQ 81
           ++ E+        V+++ AG GN                LT  LL  G  +      D +
Sbjct: 37  RLVEACVIGPEAEVLDVAAGTGNASIPAAQRGASVTASDLTPELLEAGRHRAEDEGVDLR 96

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +     +         +++      +      ++++ +  +      IG   L +W    
Sbjct: 97  WVAADAEQLPFDDESFDVVMSSIGAMFAPHHADVAAELVRVCRPGGTIG---LLSWTPDG 153

Query: 142 TWPPFWESL 150
                + ++
Sbjct: 154 MIGALFRTM 162


>gi|257870490|ref|ZP_05650143.1| rRNA small subunit methyltransferase C [Enterococcus gallinarum
           EG2]
 gi|257804654|gb|EEV33476.1| rRNA small subunit methyltransferase C [Enterococcus gallinarum
           EG2]
          Length = 200

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             L   T++++G G G +   L     R V +I+ +Q+      D++  +  R  I   D
Sbjct: 56  ADLPEGTILDVGCGYGPIGLSLAYASQRPVEMIDINQRAV----DLAQGNAKRNGIENAD 111

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQKEVGERI 162
               +  +  +      I++N P   G  ++   ++          +LT++ QK+ G   
Sbjct: 112 IHASNIYETLHQGEYAAILSNPPIRAGKEVVHEILTGALPLLKTGGTLTIVIQKKQGAPS 171

Query: 163 TAQKNSPHYG 172
             +K    +G
Sbjct: 172 AQKKMQQTFG 181


>gi|225855213|ref|YP_002736725.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           JJA]
 gi|254783318|sp|C1CG04|PRMA_STRZJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|225722408|gb|ACO18261.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           JJA]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|225859538|ref|YP_002741048.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           70585]
 gi|254783315|sp|C1C922|PRMA_STRP7 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|225720464|gb|ACO16318.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           70585]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|221232522|ref|YP_002511675.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           ATCC 700669]
 gi|298230705|ref|ZP_06964386.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255500|ref|ZP_06979086.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503512|ref|YP_003725452.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|254783316|sp|B8ZMW2|PRMA_STRPJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|220674983|emb|CAR69560.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           ATCC 700669]
 gi|298239107|gb|ADI70238.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|182684730|ref|YP_001836477.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           CGSP14]
 gi|226710120|sp|B2ISD7|PRMA_STRPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|182630064|gb|ACB91012.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           CGSP14]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|172079535|ref|ZP_02708258.2| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043293|gb|EDT51339.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           CDC1873-00]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|169833882|ref|YP_001695157.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|226710119|sp|B1I7P5|PRMA_STRPI RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|168996384|gb|ACA36996.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|168575039|ref|ZP_02721002.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           MLV-016]
 gi|183578852|gb|EDT99380.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           MLV-016]
 gi|332199793|gb|EGJ13868.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           GA41317]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|168494310|ref|ZP_02718453.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           CDC3059-06]
 gi|303258718|ref|ZP_07344698.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP-BS293]
 gi|303261882|ref|ZP_07347828.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263745|ref|ZP_07349667.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           BS397]
 gi|303265721|ref|ZP_07351620.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           BS457]
 gi|303268576|ref|ZP_07354368.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           BS458]
 gi|183575775|gb|EDT96303.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           CDC3059-06]
 gi|301802478|emb|CBW35236.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           INV200]
 gi|302636965|gb|EFL67454.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP14-BS292]
 gi|302640219|gb|EFL70674.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP-BS293]
 gi|302641855|gb|EFL72210.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           BS458]
 gi|302644848|gb|EFL75096.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           BS457]
 gi|302646783|gb|EFL77008.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           BS397]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|168335100|ref|ZP_02693209.1| precorrin-6x reductase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 652

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 11/132 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQD 102
                 V++IG G G+++  + L +   KV  IEK+ +    +++     H + LEII+ 
Sbjct: 491 LSPDSIVMDIGGGTGSVSVEIALNVPNGKVFTIEKNIKAIAAVRENKFKFHVDNLEIIEG 550

Query: 103 DA------LKVDFEKFFNISS---PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            A      L      F   SS      + A L  N  TR + N +S +T     E     
Sbjct: 551 VAPAVLEPLDAPTHAFIGGSSGNLKSIVDAILAKNASTRFVLNVVSLETLTQAIELTKSF 610

Query: 154 FQKEVGERITAQ 165
             +EV     A+
Sbjct: 611 SYREVVHMSVAR 622


>gi|149020849|ref|ZP_01835378.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP23-BS72]
 gi|225857377|ref|YP_002738888.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           P1031]
 gi|254783319|sp|C1CMA0|PRMA_STRZP RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|147930490|gb|EDK81473.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP23-BS72]
 gi|225725697|gb|ACO21549.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           P1031]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|148984211|ref|ZP_01817506.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923500|gb|EDK74613.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800569|emb|CBW33209.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           OXC141]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|149006563|ref|ZP_01830262.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147761861|gb|EDK68824.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP18-BS74]
 gi|332072940|gb|EGI83421.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           GA17545]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|145591040|ref|YP_001153042.1| beta-aspartate methyltransferase, conjectural [Pyrobaculum
           arsenaticum DSM 13514]
 gi|145282808|gb|ABP50390.1| beta-aspartate methyltransferase, conjectural [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 255

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           I  ++G   G  V E G G G LT +L        +V   D +
Sbjct: 87  IVRAAGLGPGSRVAEAGTGSGFLTAVLAWFVRPWGVVYSFDNR 129


>gi|126322017|ref|XP_001372768.1| PREDICTED: similar to epithelial calcium channel [Monodelphis
           domestica]
          Length = 442

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISS- 91
           NI +K+  +S S  G  ++++ AG G  T   L+   A  V   E D      LK     
Sbjct: 212 NITEKLRVASMSCAGEVLVDLYAGIGYFTLPFLIHANAAFVHACEWDPHAAAALKKNLEL 271

Query: 92  -QHPNRLEIIQDDALKVDFEKFFN 114
               +R  I   D  K+      N
Sbjct: 272 NGVSDRCSIHLGDNRKLKLRSIAN 295


>gi|124486387|ref|YP_001031003.1| hypothetical protein Mlab_1572 [Methanocorpusculum labreanum Z]
 gi|124363928|gb|ABN07736.1| putative methylase [Methanocorpusculum labreanum Z]
          Length = 193

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 26/152 (17%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  +L K A +        V+EIG G G + + +  +    V+ +E +       +++  
Sbjct: 14  DTYLLIKAART-EVKQEDRVLEIGTGSGAVAKSVAEITP-AVLAVEINPHAAQYAREV-- 69

Query: 92  QHPNRLEIIQDDALKVDFEKFFNI--SSPIRIIANLPYNIGTRL--LFNWISAD-TWPPF 146
              N +E+I+ D         F+        I+ N PY          +W+       P 
Sbjct: 70  ---NGIEVIRGD--------LFDPVCGEFDLILFNAPYLPTDPAERFDDWLEYALDGGPS 118

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178
              +   F +E      A      +GR+ +L 
Sbjct: 119 GRDVVERFLRE------APSRLATFGRILLLI 144


>gi|41409741|ref|NP_962577.1| tRNA (guanine-N(7))-methyltransferase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|50401461|sp|Q73TS5|TRMB_MYCPA RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|41398573|gb|AAS06193.1| hypothetical protein MAP_3643c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 259

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 24/163 (14%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDD 103
                V+EIG G G  T  +        VI +E  ++    +L  I   +   + +I+ +
Sbjct: 84  RKAPVVLEIGCGNGTSTLAMAKEEPGVDVIAVEVYRRGLAQLLCAIDRDNVTNIRLIRGN 143

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           AL V       + +P  +                   D WP          Q      I 
Sbjct: 144 ALDV----LQRLIAPASLTG-----------VRVFFPDPWPKARHHKRRFLQPGTVGLIA 188

Query: 164 AQ--KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP-KVTS 203
            +        G L V T     A  + D+        P    S
Sbjct: 189 DRLLPG----GVLHVATDHAGYAEHIADVGAGEPRLRPANPDS 227


>gi|15459276|gb|AAL00411.1| Ribosomal protein methyltransferase [Streptococcus pneumoniae R6]
          Length = 325

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 177 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 236

Query: 103 DALK 106
           D LK
Sbjct: 237 DLLK 240


>gi|116516647|ref|YP_817026.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           D39]
 gi|148994978|ref|ZP_01823956.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP9-BS68]
 gi|161410740|ref|NP_359200.2| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           R6]
 gi|168488514|ref|ZP_02712713.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP195]
 gi|38605299|sp|Q8DNP4|PRMA_STRR6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|122278128|sp|Q04J12|PRMA_STRP2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|116077223|gb|ABJ54943.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           D39]
 gi|147926915|gb|EDK77962.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572631|gb|EDT93159.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP195]
 gi|332072602|gb|EGI83085.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           GA17570]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|15901611|ref|NP_346215.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           TIGR4]
 gi|111657309|ref|ZP_01408071.1| hypothetical protein SpneT_02001480 [Streptococcus pneumoniae
           TIGR4]
 gi|38605432|sp|Q97P62|PRMA_STRPN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|14973279|gb|AAK75855.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           TIGR4]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|113475031|ref|YP_721092.1| precorrin-6B methylase [Trichodesmium erythraeum IMS101]
 gi|110166079|gb|ABG50619.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Trichodesmium erythraeum IMS101]
          Length = 200

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
                      V +IGAG G +   + L     +VI IE+DQ+   +++   ++     +
Sbjct: 36  ISYLRLQSDSVVWDIGAGTGTIPVEIGLICPQGRVIAIERDQEVASLIRRNCNRFGVENV 95

Query: 98  EIIQDDA 104
            +I+ +A
Sbjct: 96  TVIEGNA 102


>gi|226942709|ref|YP_002797782.1| ArsR family regulatory protein [Azotobacter vinelandii DJ]
 gi|226717636|gb|ACO76807.1| Bacterial regulatory protein, ArsR family [Azotobacter vinelandii
           DJ]
          Length = 336

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDDALK 106
           +E+G G G L   L    AR V  ++       + +   + +    +E+   DAL+
Sbjct: 171 LEVGPGDGALLPELARRFAR-VTALDNSPAMLELARQRCARECLENVELKLADALQ 225


>gi|325677139|ref|ZP_08156807.1| tRNA (guanine-N(7)-)-methyltransferase [Rhodococcus equi ATCC
           33707]
 gi|325552044|gb|EGD21738.1| tRNA (guanine-N(7)-)-methyltransferase [Rhodococcus equi ATCC
           33707]
          Length = 263

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
            D   ++EIG+G G  T  +        +I +E        +L+ +       + +++ D
Sbjct: 88  RDAPLIVEIGSGTGTATAAMAKAEPHVNLIAVEVYRPGLAQLLQLVERNELTNVRVLRGD 147

Query: 104 ALKV 107
           A++V
Sbjct: 148 AVEV 151


>gi|300310016|ref|YP_003774108.1| cyclopropane-fatty-acyl-phospholipid synthase [Herbaspirillum
           seropedicae SmR1]
 gi|300072801|gb|ADJ62200.1| cyclopropane-fatty-acyl-phospholipid synthase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKV-IVIEKDQQFFPILKDISSQH 93
           +  I E      G T+++IG G G L  +     GAR V + + ++Q      +  ++  
Sbjct: 163 IDHILEKIQLRPGQTLLDIGCGWGALVLRAAQKYGARCVGVTLSRNQYALARERVEAAGL 222

Query: 94  PNRLEIIQDD 103
            +R+EI   D
Sbjct: 223 SDRIEIRLQD 232


>gi|282860466|ref|ZP_06269532.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
 gi|282564202|gb|EFB69738.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
          Length = 276

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            ++ +I  +S    G  V+++GAG G   +    +G   V+ +E D++     + 
Sbjct: 42 QALVDRIVAAS---PGRHVLDVGAGTGIEARQFRAVGC-TVLGVEPDERMAAFARR 93


>gi|302868550|ref|YP_003837187.1| ribosomal RNA adenine methylase transferase [Micromonospora
          aurantiaca ATCC 27029]
 gi|302571409|gb|ADL47611.1| ribosomal RNA adenine methylase transferase [Micromonospora
          aurantiaca ATCC 27029]
          Length = 251

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 9/57 (15%)

Query: 30 LLDLNI---LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQ 81
          LL+ +I   L ++A          V+EIGAG G +T  L  +  R   V  ++ D +
Sbjct: 15 LLNPSIHAELDRLA----IRTNQRVLEIGAGIGEITARLADIVGRYGSVTAVDADTR 67


>gi|262831172|sp|B2VI36|TRMN6_ERWT9 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
          Length = 245

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP--NRLE 98
           +       V++IG+G G +  ML    +  V    +E D++     ++  +  P  +R+ 
Sbjct: 40  APVTSVKRVLDIGSGSGLIALMLAQRTSEPVQIDAVELDEEAATQAQENVAASPWAHRVH 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + Q D ++       + S    I++N PY
Sbjct: 100 VQQADVVEWAQRCEHSYS---LIVSNPPY 125


>gi|301114313|ref|XP_002998926.1| tRNA (adenine-N(1)-)-methyltransferase catalytic subunit, putative
           [Phytophthora infestans T30-4]
 gi|262111020|gb|EEY69072.1| tRNA (adenine-N(1)-)-methyltransferase catalytic subunit, putative
           [Phytophthora infestans T30-4]
          Length = 348

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 16/136 (11%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNR 96
           I  ++G   G  V+E G G G LT       A    V   E +     I ++   +  N 
Sbjct: 114 IMFAAGLRSGSRVVESGTGSGALTTSFARTVAPHGHVFTFEFNAHRAEIAREEFKR--NG 171

Query: 97  LEIIQDDALKVDFEKFFNISSPIRI---IANLPYNIGTRL-----LFNWISADTWPPFWE 148
           LE +    + VD         P+ +   I  +  ++ +           +    +   + 
Sbjct: 172 LESV----ITVDCRDACEQGFPVELEGTIDMVFLDLPSPWKAVGHAAKMLKQGGFFASYS 227

Query: 149 SLTLLFQKEVGERITA 164
                 QK  G   +A
Sbjct: 228 PCIEQVQKTCGALRSA 243


>gi|229061147|ref|ZP_04198498.1| Methyltransferase type 11 [Bacillus cereus AH603]
 gi|228718230|gb|EEL69868.1| Methyltransferase type 11 [Bacillus cereus AH603]
          Length = 239

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G +V+EIG G G     +      KV  +EK++      KD      
Sbjct: 25  LTKQLLAQLPLRLGASVLEIGCGTGKTAAYMTKELGYKVTAVEKNEIMIQKAKDRWLFDG 84

Query: 95  NRLEIIQDDA 104
             +++IQ D 
Sbjct: 85  LNIQLIQGDV 94


>gi|254511593|ref|ZP_05123660.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Rhodobacteraceae bacterium KLH11]
 gi|221535304|gb|EEE38292.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Rhodobacteraceae bacterium KLH11]
          Length = 399

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 29  FLLDLNILKKIAESS-----GSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQF 82
           F  D  I K+   +          G  + +IG G G+++ + L+   +     IE     
Sbjct: 226 FETDGQITKRPVRALSLSALAPQRGEYLWDIGGGTGSISIEWLMCDPSLTATAIEPRADR 285

Query: 83  FPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRII 122
              ++  +     +RLE++Q  A     E    +S+P  + 
Sbjct: 286 AERIRRNADALGQDRLEVVQGTA----PEALGTLSAPDAVF 322


>gi|254168616|ref|ZP_04875459.1| methylase, putative [Aciduliprofundum boonei T469]
 gi|197622450|gb|EDY35022.1| methylase, putative [Aciduliprofundum boonei T469]
          Length = 165

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
               G  V+E+G G G +       G+  V+ ++ D++    L++ +     ++E    D
Sbjct: 4   NIRCGKKVLEVGTGNGAIAIECAKSGS-SVLAVDIDKEAVKRLREEAKIKNLKIETKVSD 62

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
             +    K+        II N PY  G       +       + + + L F  +V  +  
Sbjct: 63  LFENVDGKY------DTIIFNPPYLPGNPKDLKDLQWAGGGKYGDEVILKF-LDVAWKYL 115

Query: 164 AQKNSPHYGRLS 175
           A      Y  LS
Sbjct: 116 ADDGEI-YIILS 126


>gi|157150951|ref|YP_001451183.1| hypothetical protein SGO_1917 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075745|gb|ABV10428.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNR 96
           I +       IT++E+G+G GNL + +L    +++  + +E D     +   I+    ++
Sbjct: 101 IIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMGSK 160

Query: 97  LEIIQDDALK 106
               Q DA++
Sbjct: 161 AHFAQGDAVR 170


>gi|146181391|ref|XP_001022651.2| hypothetical protein TTHERM_00727660 [Tetrahymena thermophila]
 gi|146144188|gb|EAS02406.2| hypothetical protein TTHERM_00727660 [Tetrahymena thermophila
           SB210]
          Length = 229

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI----LKDISSQHPN 95
           AE   +L+   V + G G G L+  +L +GA +VI +E D ++  I    L+D     P+
Sbjct: 52  AEIEENLEDQIVGDFGCGTGMLSCGMLCVGAGQVIGLELDSKYAQITLDTLEDKFED-PS 110

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             +II  +  K       N      ++ N P+
Sbjct: 111 MYDIININV-KHWQPPTLNGKLFDTVVMNPPF 141


>gi|76801241|ref|YP_326249.1| S-adenosylmethionine-dependent methyltransferase 3 [Natronomonas
           pharaonis DSM 2160]
 gi|76557106|emb|CAI48680.1| homolog 3 to S-adenosylmethionine-dependent methyltransferase 3
           [Natronomonas pharaonis DSM 2160]
          Length = 236

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP--ILKD 88
           +D    + + ++   +DG  ++E+  G G  T ML   GA  ++ ++  +        K 
Sbjct: 28  IDRREKEAVLDALAPVDGKRILEVACGTGRFTVMLAERGAD-IVGMDISEAMLEQGRAKA 86

Query: 89  ISSQHPNRLEIIQDDALKVDFEK-FFNISSPIRIIANLP 126
            ++     L  +Q DA ++ F    F+    +R     P
Sbjct: 87  RAAGVEETLSFLQGDAGRLPFPDNHFDAVFAMRFFHLAP 125


>gi|315656323|ref|ZP_07909214.1| methyltransferase domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315493325|gb|EFU82925.1| methyltransferase domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 255

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRQSQYAKQI 115

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 116 EFCVADA 122


>gi|312277558|gb|ADQ62215.1| Ribosomal protein L11 methyltransferase, putative [Streptococcus
           thermophilus ND03]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TVI++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDDVAVRVAQENIDMNPGMENIHVATG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|254488998|ref|ZP_05102203.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp. GAI101]
 gi|214045867|gb|EEB86505.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp. GAI101]
          Length = 219

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 22/138 (15%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + ++        V+E+G G G     +L+  AR+V  I++ ++     ++I   
Sbjct: 68  PSVVALMTQALEVTSRDKVLEVGTGSGY-QAAILSKLARRVYTIDRHRRLVQEAREIF-- 124

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
                     DAL +             +    P++   R++    + D   P       
Sbjct: 125 ----------DALDLTNITAITADGSFGLPEQAPFD---RIIVTAAAEDPPGPLL----- 166

Query: 153 LFQKEVGERITAQKNSPH 170
             Q +VG  +        
Sbjct: 167 -AQLKVGGIMVVPVGQSD 183


>gi|254467260|ref|ZP_05080671.1| methyltransferase small [Rhodobacterales bacterium Y4I]
 gi|206688168|gb|EDZ48650.1| methyltransferase small [Rhodobacterales bacterium Y4I]
          Length = 255

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK----VIVIEKDQQFFPIL 86
           +D  +L   A +  +  G TV+E+G G G   Q LL LGAR     +  +E    +  + 
Sbjct: 32  VDPVLL---AAAVPARAGETVLELGCGAG---QALLCLGARVPGLALAGVELQAPYADLA 85

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  ++ +   +++ + D   +   +   +     +IAN PY 
Sbjct: 86  RRNAAANGQAIDVHEADLSAL--PEALKLRQFHHVIANPPYY 125


>gi|159899618|ref|YP_001545865.1| rRNA (guanine-N(2)-)-methyltransferase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892657|gb|ABX05737.1| rRNA (guanine-N(2)-)-methyltransferase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 365

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           ++        V+++G G G L   L    +   +    D     I     +   N+L   
Sbjct: 216 DAVHIQANQRVLDLGCGAGILGMFLQQRESTLALTY-IDSTMVAIEATKRNLQTNQLT-- 272

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIG 130
               L  D  +  N      +++N P+++G
Sbjct: 273 -GRVLASDGIQAVNGEQFDLVVSNPPFHVG 301


>gi|108805342|ref|YP_645279.1| DNA-(apurinic or apyrimidinic site) lyase/formamidopyrimidine-DNA
           glycosylase [Rubrobacter xylanophilus DSM 9941]
 gi|108766585|gb|ABG05467.1| DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA
           glycosylase [Rubrobacter xylanophilus DSM 9941]
          Length = 286

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 214 PIPCCLESLKKITQEAFGKRR---------KTLRQSLKRLGGENLLHQAGIETNLRAENL 264
           P P   E   +  +E  G RR         ++L   +  +  + +L+ A +    RA +L
Sbjct: 134 PEPFSEEFTVRYLKERLGSRRAQIKPLLLDQSLISGIGNIYADEILYDARLSPRRRASSL 193

Query: 265 SIEDFCRITNILTDN 279
           S E++ R+   +  N
Sbjct: 194 SEEEWERLYAAIRSN 208


>gi|55820235|ref|YP_138677.1| ribosomal protein L11 methyltransferase [Streptococcus thermophilus
           LMG 18311]
 gi|55822126|ref|YP_140567.1| ribosomal protein L11 methyltransferase [Streptococcus thermophilus
           CNRZ1066]
 gi|81820368|sp|Q5M1S5|PRMA_STRT1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|81820530|sp|Q5M6B7|PRMA_STRT2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|55736220|gb|AAV59862.1| 50S ribosomal protein L11 methyltransferase [Streptococcus
           thermophilus LMG 18311]
 gi|55738111|gb|AAV61752.1| 50S ribosomal protein L11 methyltransferase [Streptococcus
           thermophilus CNRZ1066]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TVI++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDDVAVRVAQENIDMNPGMENIHVATG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|116627095|ref|YP_819714.1| ribosomal protein L11 methyltransferase [Streptococcus thermophilus
           LMD-9]
 gi|122268302|sp|Q03MQ4|PRMA_STRTD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|116100372|gb|ABJ65518.1| LSU ribosomal protein L11P methyltransferase [Streptococcus
           thermophilus LMD-9]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TVI++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDDVAVRVAQENIDMNPGMENIHVATG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|324993041|gb|EGC24961.1| methyltransferase domain protein [Streptococcus sanguinis SK405]
 gi|324995650|gb|EGC27562.1| methyltransferase domain protein [Streptococcus sanguinis SK678]
 gi|327461309|gb|EGF07640.1| methyltransferase domain protein [Streptococcus sanguinis SK1]
 gi|327473947|gb|EGF19360.1| methyltransferase domain protein [Streptococcus sanguinis SK408]
          Length = 195

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAES--------SGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+ +              G  V+++G G G L   L        
Sbjct: 24  LGQRLTFLTDAGVFSKKMIDYGSRVLLSVLDFEAGEQVLDVGCGYGPLGLTLAKAQGVTA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +Q+   + +  + ++    +I Q +  +      F+      II+N P   G ++
Sbjct: 84  TMVDINQRALDLAQKNAERNQISADIFQSNVYE-KVSGIFD-----HIISNPPIRAGKQV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK 156
           +   IS           LTL+ QK
Sbjct: 138 VHEVISGSYEHLTEGGDLTLVIQK 161


>gi|312866251|ref|ZP_07726470.1| conserved hypothetical protein [Streptococcus downei F0415]
 gi|311098224|gb|EFQ56449.1| conserved hypothetical protein [Streptococcus downei F0415]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           V+EIG+G GNL Q L+   ++K+  + +E D     +   I+    + L  +Q+DA++
Sbjct: 113 VLEIGSGTGNLAQTLINNSSKKLDYLGLEVDDLLIDLSASIADVVGSELSFVQEDAVR 170


>gi|289644861|ref|ZP_06476910.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           symbiont of Datisca glomerata]
 gi|289505320|gb|EFD26370.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           symbiont of Datisca glomerata]
          Length = 365

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQ 92
            ++KK+ +      G+ V+EIG G G    ++       +   IE D       +   ++
Sbjct: 76  GVMKKMLDMLDVQLGMDVLEIGTGTGYNAALIAERSKTGRTATIEVDPVIADHARATIAR 135

Query: 93  HPNRLEIIQDD 103
               + I+ DD
Sbjct: 136 LGIPVTIVTDD 146


>gi|257464301|ref|ZP_05628679.1| Methyltransferase type 11 [Fusobacterium sp. D12]
 gi|317061810|ref|ZP_07926295.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313687486|gb|EFS24321.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 263

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 19/120 (15%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD-- 79
           K+ + ++      I++ IAE +   +G   +++G G G LT        +  + I  D  
Sbjct: 76  KRKLSKH------IIEGIAEYATIPEGGKGLDVGCGSGALTIACAKRNPKASM-IGLDYW 128

Query: 80  ----QQFFPIL--KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
                 F   L  K+ S +    +  ++ +A+K+++       S   + +N  Y+  + +
Sbjct: 129 GKQYPSFSQKLCEKNASCEGVGNVTFLEGNAIKMEYPD----ESFDFVTSNYVYHNISGI 184


>gi|254477104|ref|ZP_05090490.1| cyclopropane-fatty-acyl-phospholipid synthase [Ruegeria sp. R11]
 gi|214031347|gb|EEB72182.1| cyclopropane-fatty-acyl-phospholipid synthase [Ruegeria sp. R11]
          Length = 401

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 17/116 (14%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
             + +  G   G  V+E+G G G   +        +V  +   ++     ++    +   
Sbjct: 175 ASMVDQMGVKPGDHVLEVGCGWGGFAEYAARERGLRVTGLTISEEQLKFARERIDKAGLS 234

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            ++E+   D                R        I +  +F  +    WP +++ +
Sbjct: 235 GQVELRMQD---------------YRDCKGEFDGIASIEMFEAVGEKYWPAYFKMI 275


>gi|209964294|ref|YP_002297209.1| ribosomal RNA small subunit methyltransferase C [Rhodospirillum
           centenum SW]
 gi|209957760|gb|ACI98396.1| ribosomal RNA small subunit methyltransferase C [Rhodospirillum
           centenum SW]
          Length = 276

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN----R 96
            +        V+E+G G G +T+ L       V  ++        L+    + P     R
Sbjct: 48  RALAERSPGPVLELGCGSGRITRSLAAYAP--VTAVDIAAPMLDRLRARLEREPEAVRAR 105

Query: 97  LEIIQDDALKVDFEK 111
           +  ++ DA  +D  +
Sbjct: 106 VTPVRADAATLDLPR 120


>gi|206601448|gb|EDZ37936.1| biotin synthesis protein/methyltransferase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 228

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              + ++++G+GPG L++++L    + +V+  +  Q+     K   S+  +R  I Q D 
Sbjct: 44  TKKLKILDLGSGPGTLSELVLERYPQSEVLAFDLTQEMLDSAKVRLSRFGSRFRIFQGD- 102

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIG 130
                ++ F +     +     +++ 
Sbjct: 103 --YRNKELFGVGYDAILAGMTLHHLT 126


>gi|126728320|ref|ZP_01744136.1| N-6 Adenine-specific DNA methylase [Sagittula stellata E-37]
 gi|126711285|gb|EBA10335.1| N-6 Adenine-specific DNA methylase [Sagittula stellata E-37]
          Length = 245

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDI 89
            D  IL    ++     G TV+E+G G G     L        +  +E    +  + +  
Sbjct: 19  TDPVILAASVQA---CAGETVLELGCGGGAALCCLGWRVPGLTLTGLEIQPGYADLARRN 75

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            + +    EI + D             S   +IAN PY    + L   
Sbjct: 76  LAGNGLAGEIHEGDV--AAPPAALKARSFDHVIANPPYFETGKGLLAL 121


>gi|47199994|emb|CAF88386.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 18/159 (11%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE---KDQQFFPILKDISSQHPN 95
           I ++  S+ G  V+++GAG G L+   +  GA+KV  IE     +    ++K   +Q  +
Sbjct: 35  ILKNGESIRGKVVLDVGAGTGVLSVFCVQAGAKKVYAIEACSIAEHAVRVVKQ--NQMDD 92

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           ++E+I+         +   +   + +++ L   +  R    W+      P    L    +
Sbjct: 93  KIEVIRG------MVESVELPEKVDVLSMLNSVLHARD--RWLK-----PGGVLLPSTAE 139

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
             +               L+V   +    + + D++   
Sbjct: 140 LYIAPVSDRVVEDNVRFWLTVKDQYGVDMSCLADVARAC 178


>gi|121996838|ref|YP_001001625.1| 23S rRNA 5-methyluridine methyltransferase [Halorhodospira
           halophila SL1]
 gi|121588243|gb|ABM60823.1| 23S rRNA m(5)U-1939 methyltransferase [Halorhodospira halophila
           SL1]
          Length = 434

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +++ ++++  E      G  ++++  G GN T  L   GA  V  IE D +     ++ +
Sbjct: 273 INMAMVERALEWLQPQSGRRILDLFCGVGNFTLPLAREGA-TVTGIEGDPRLVERAEENA 331

Query: 91  SQHPNRLEIIQDDA 104
           + +      +  D 
Sbjct: 332 AANG-----LHADF 340


>gi|326569390|gb|EGE19450.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis BC8]
          Length = 310

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII- 100
           ++  L    VI+ G G G L    L LGAR+V+ ++ D Q     +  ++ +     ++ 
Sbjct: 157 AAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVDDRLLA 216

Query: 101 ----QDDALKVDFEKFFNI 115
               + DA +    +  ++
Sbjct: 217 FLPAEFDAYRTQNPQLADV 235


>gi|326566695|gb|EGE16834.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           103P14B1]
          Length = 310

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII- 100
           ++  L    VI+ G G G L    L LGAR+V+ ++ D Q     +  ++ +     ++ 
Sbjct: 157 AAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVDDRLLA 216

Query: 101 ----QDDALKVDFEKFFNI 115
               + DA +    +  ++
Sbjct: 217 FLPTEFDAYRTQNPQLADV 235


>gi|326561083|gb|EGE11448.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           7169]
          Length = 310

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII- 100
           ++  L    VI+ G G G L    L LGAR+V+ ++ D Q     +  ++ +     ++ 
Sbjct: 157 AAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVDDRLLA 216

Query: 101 ----QDDALKVDFEKFFNI 115
               + DA +    +  ++
Sbjct: 217 FLPAEFDAYRTQNPQLADV 235


>gi|299883399|ref|YP_003738952.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
 gi|300712415|ref|YP_003738228.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
 gi|299126099|gb|ADJ16437.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
 gi|299126825|gb|ADJ17161.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
          Length = 219

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQHP 94
           ++  +S     G  V+E+G G GN  + L T    +  V+  D          +   Q  
Sbjct: 36  ERAVKSLALDSGERVLELGCGLGNSFEALRTRVGSQGAVVGVDYSHGMVERAAERVRQAG 95

Query: 95  -NRLEIIQDD 103
              + ++  D
Sbjct: 96  WRNVHLVHGD 105


>gi|296112846|ref|YP_003626784.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis RH4]
 gi|295920540|gb|ADG60891.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis RH4]
          Length = 310

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII- 100
           ++  L    VI+ G G G L    L LGAR+V+ ++ D Q     +  ++ +     ++ 
Sbjct: 157 AAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVDDRLLA 216

Query: 101 ----QDDALKVDFEKFFNI 115
               + DA +    +  ++
Sbjct: 217 FLPAEFDAYRTQNPQLADV 235


>gi|317129692|ref|YP_004095974.1| methyltransferase type 12 [Bacillus cellulosilyticus DSM 2522]
 gi|315474640|gb|ADU31243.1| Methyltransferase type 12 [Bacillus cellulosilyticus DSM 2522]
          Length = 240

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I  +I +         V+EIG G G+    ++     KV+ ++   +     K+   +
Sbjct: 21  KKITNQILDDYPIKKNCLVLEIGCGIGDTASAIVKKFGAKVVALDSHPKMIEKAKNRHIE 80

Query: 93  HPNRLEII--QDDALKVDFEK 111
             N   II   +D L     K
Sbjct: 81  SEN---IIFKNEDFLNATLPK 98


>gi|251796124|ref|YP_003010855.1| methyltransferase type 11 [Paenibacillus sp. JDR-2]
 gi|247543750|gb|ACT00769.1| Methyltransferase type 11 [Paenibacillus sp. JDR-2]
          Length = 251

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          + G     ++ ++GAG G  T++LL  G+ KV  +E +        +  S +P
Sbjct: 32 TIGFRPESSIADVGAGTGIFTRLLLEQGS-KVTAVEPNPDMRQAAVEQLSGYP 83


>gi|190892898|ref|YP_001979440.1| DNA-cytosine methyltransferase [Rhizobium etli CIAT 652]
 gi|190698177|gb|ACE92262.1| putative DNA-cytosine methyltransferase protein [Rhizobium etli
           CIAT 652]
          Length = 638

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             I E   + +  TV+EI AG G ++  L   G   + +IE D+     L+         
Sbjct: 268 ASIRELPPAHERPTVVEICAGAGGMSIGLERAGFEHIALIEYDKYAAATLRRNRPDW--- 324

Query: 97  LEIIQDDALKVDFE-------KFFNISSPIRIIANLPYNIGTRLLFNWI 138
             +I++D  K+DF+          +   P +  ++  Y +G     + +
Sbjct: 325 -TVIKEDLRKMDFKLYRQLEIDLVSGGPPCQPYSSDGYGLGKDDPRDLL 372


>gi|171184846|ref|YP_001793765.1| methyltransferase type 12 [Thermoproteus neutrophilus V24Sta]
 gi|170934058|gb|ACB39319.1| Methyltransferase type 12 [Thermoproteus neutrophilus V24Sta]
          Length = 254

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +V+E+GAG G     L    +R V+ +E  ++    L+  + +   ++++++
Sbjct: 59  SVLEVGAGAGAYAVPLAKRVSR-VVAVEPSREMARYLRKYAEEEGVKVDVVE 109


>gi|148654910|ref|YP_001275115.1| type 11 methyltransferase [Roseiflexus sp. RS-1]
 gi|148567020|gb|ABQ89165.1| Methyltransferase type 11 [Roseiflexus sp. RS-1]
          Length = 295

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 7/120 (5%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPN 95
           +I E+     G  ++++G G G  T  +L     +V  + +  D       + +    P 
Sbjct: 66  RIIEAGAVRPGQRILDVGCGIGG-TLAMLNERFEQVELLGLNIDLSQIEQARHVVCSRPG 124

Query: 96  R-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
             ++    DAL++    + + S    +     ++  +R  F   +     P        F
Sbjct: 125 NIVDFSVGDALRL---PYADESFDTVLAVECSFHFASREAFLREAHRVLRPGGRLALSDF 181


>gi|18976583|ref|NP_577940.1| hypothetical protein PF0211 [Pyrococcus furiosus DSM 3638]
 gi|18892146|gb|AAL80335.1| hypothetical protein PF0211 [Pyrococcus furiosus DSM 3638]
          Length = 204

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           + G +    V ++GAG G L+     LGA+K+  +E D++   IL +   +    N +E+
Sbjct: 42  TLGDIKEKIVADLGAGTGVLSIGAALLGAKKIYAVEIDEEAVKILLENLEEFKVRNVVEV 101

Query: 100 IQDDALKV 107
              D  + 
Sbjct: 102 KVSDVSQF 109


>gi|317403089|gb|EFV83622.1| protein-L-isoaspartate O-methyltransferase [Achromobacter
           xylosoxidans C54]
          Length = 254

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQ 92
           + + IA          V+E+GAG G     +L    R+V  IE+ +  + + ++   + +
Sbjct: 107 VARMIAAICEDRTPTRVLEVGAGCGY-QAAVLAQFVREVHSIERIRGLYELAREHLRALR 165

Query: 93  HPNRLEIIQDDAL 105
              R+ +I  D +
Sbjct: 166 LTTRIRLIYGDGM 178


>gi|315186859|gb|EFU20617.1| Methyltransferase type 11 [Spirochaeta thermophila DSM 6578]
          Length = 265

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +  G  D   V+++G G G +T+ +  L   KV+ I+         +  +       E+ 
Sbjct: 26  DLLGIKDTENVLDVGCGTGGITKRIRGLTRGKVVGIDPSPGMIEEARKGAGGLDVSFELR 85

Query: 101 QDDALKVDFE 110
             + ++   E
Sbjct: 86  GAEEMEYQEE 95


>gi|268317717|ref|YP_003291436.1| spermidine synthase [Rhodothermus marinus DSM 4252]
 gi|262335251|gb|ACY49048.1| spermidine synthase [Rhodothermus marinus DSM 4252]
          Length = 296

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 47  DGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQ 101
           +  +V+ IG G G  L ++L     R+V+++E DQ      ++    + N    R+ +I 
Sbjct: 88  NDASVLIIGGGDGGTLREVLRHDWVRRVVMVEIDQVVIERCREFLGFNGNYDDPRVTLII 147

Query: 102 DDALKVDFEKFFNISSPIRII 122
            DA +   E+         I+
Sbjct: 148 GDAAQYVAEEAARQRPFDAIL 168


>gi|256389380|ref|YP_003110944.1| cyclopropane-fatty-acyl-phospholipid synthase [Catenulispora
           acidiphila DSM 44928]
 gi|256355606|gb|ACU69103.1| Cyclopropane-fatty-acyl-phospholipid synthase [Catenulispora
           acidiphila DSM 44928]
          Length = 424

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           +  + +++G   G  ++EIG+G G L           V+ +   ++   + +    ++  
Sbjct: 195 IDAMLDAAGVRKGTRLLEIGSGWGGLAIKAAGERGATVLTVTLSEEQQELARRRIAAAGL 254

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
             R+E+   D  +V  E+ F+
Sbjct: 255 AGRIEVRLADYREVAEEQPFD 275


>gi|218437742|ref|YP_002376071.1| ubiquinone/menaquinone biosynthesis methyltransferase [Cyanothece
           sp. PCC 7424]
 gi|218170470|gb|ACK69203.1| ubiquinone/menaquinone biosynthesis methyltransferase [Cyanothece
           sp. PCC 7424]
          Length = 236

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 18/97 (18%)

Query: 24  YMGQNFLLDLNILKKI-----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            +GQ+         +I      + S +  G   +++  G G+LTQ+L     +   VI  
Sbjct: 31  SLGQH---------RIWKQMTVKWSQAKPGNIALDVCCGSGDLTQLLARQVGKTGQVIGL 81

Query: 79  D--QQFFPILKDISSQHPNRLEI--IQDDALKVDFEK 111
           D   Q   I +   ++  + L I   + DAL + F++
Sbjct: 82  DFSPQLLTIARQRIAEKSSHLPIRFREGDALALPFDE 118


>gi|150403118|ref|YP_001330412.1| type 12 methyltransferase [Methanococcus maripaludis C7]
 gi|150034148|gb|ABR66261.1| Methyltransferase type 12 [Methanococcus maripaludis C7]
          Length = 223

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 33  LNILKKIAESSG----------SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQ 81
            N++ KI  SS                 ++E+G+G G LT  ++ L    ++  I+  + 
Sbjct: 16  ENMIIKIVPSSEDFFGAVLSFIPEGNTKILELGSGTGFLTTRIVELNPSAEITCIDLSEG 75

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA- 140
              + +       + ++ I+ D  +   +  F++      + +LP +  T +L     + 
Sbjct: 76  MLDVAR--GKPELSDVKFIKGDFREAWGDGKFDVILSTLCLHHLPDDDRTDILGKIYDSL 133

Query: 141 DTWPPFWESLTLLFQKE 157
           +    F      L + E
Sbjct: 134 NPRGAFINGDVFLGETE 150


>gi|86607349|ref|YP_476112.1| precorrin-6B methylase [Synechococcus sp. JA-3-3Ab]
 gi|86555891|gb|ABD00849.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Synechococcus sp. JA-3-3Ab]
          Length = 201

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEII 100
               +   + +IGAG G +      L  R +VI IE+D +   +++    +   N +++I
Sbjct: 40  LRLGEDHCLWDIGAGTGTIAIEAAILCPRARVIAIERDAEVVSLIESNCEKFGLNNVQVI 99

Query: 101 QDDALKVDFEKFFNISSPIRIIA 123
           Q  A     +    +S P   I 
Sbjct: 100 QGTA----PDCLHQLSPPPDRIC 118


>gi|19746163|ref|NP_607299.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS8232]
 gi|139473697|ref|YP_001128413.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes str.
           Manfredo]
 gi|209559499|ref|YP_002285971.1| hypothetical protein Spy49_0976c [Streptococcus pyogenes NZ131]
 gi|19748342|gb|AAL97798.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|134271944|emb|CAM30182.1| putative methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|209540700|gb|ACI61276.1| Conserved hypothetical protein [Streptococcus pyogenes NZ131]
          Length = 197

 Score = 37.9 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           +  H +  + +              FL D  +  KK+ +        +    +   V+++
Sbjct: 11  DSLHDIHEVKVELLNHPFT------FLTDSGVFSKKMVDFGSQVLLETLNFKENERVLDL 64

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L  +      +++ + +   + +  ++ +   + I Q +  + +    F 
Sbjct: 65  GCGYGPLGISLAKVQRVDATLVDINNRALDLARKNATNNQVAVTIFQSNIYE-NISGHFE 123

Query: 115 ISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQK 156
                 II+N P   G R++ + I  +  +      LT++ QK
Sbjct: 124 -----HIISNPPIRAGKRVVHSIIEKSIDFLVVNGDLTIVIQK 161


>gi|296268270|ref|YP_003650902.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Thermobispora bispora DSM 43833]
 gi|296091057|gb|ADG87009.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Thermobispora bispora DSM 43833]
          Length = 251

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 41/212 (19%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKK--------YMGQNFLLDLNILKKIAESSGSLDGITVI 52
           MT  +     + + + +    K+         +GQ    D    +  A +  +  G  V+
Sbjct: 1   MTRASLDKQPREVAAMFDRTAKRYDLVNTVLSLGQ----DRTWRRATAAAIDAGPGELVL 56

Query: 53  EIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR---------LEIIQDD 103
           ++ AG G  T      GAR    I  D     +L+   ++             +  I  D
Sbjct: 57  DLAAGTGTSTDAFTMYGAR---AIACDFSL-GMLRTGVARRGGSGLYGGGVRGVTFIAGD 112

Query: 104 ALKVDFEK-----------FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
           AL++ F+              N++ P + +  +                  P  W  L  
Sbjct: 113 ALRLPFKSETFDAVTISFGLRNVADPAQALREMLRVTKPGGRLVICEFSRPPARWFDLVY 172

Query: 153 LFQKE-----VGERITAQKNSPHYGRLSVLTG 179
                     V   +++  +S  Y   S+   
Sbjct: 173 SQYLMRLLPLVARLLSSNPDSYEYLAESIRAW 204


>gi|289670268|ref|ZP_06491343.1| cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 356

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +  +DG  ++E+G G G+LT  +     GA    V     Q   IL+    +  + +++I
Sbjct: 126 AELVDGQRILELGCGWGSLTLWMAERYPGASITAVSNSRPQRAHILEQCRVRGLSNVQVI 185

Query: 101 QDD--ALKVDFEKFFNISSPIRIIANLPY 127
             D  AL +    F  + S         Y
Sbjct: 186 TADVNALALPPGGFDRVVSVEMFEHMRNY 214


>gi|313127589|ref|YP_004037859.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
 gi|312293954|gb|ADQ68414.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
          Length = 170

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             D   V+E G G G L   +      +V+ ++ D++     +           + + D 
Sbjct: 49  PDDANRVLEFGCGTGPLLTRI-EDEYEEVLGVDADERMLESARK---------HVSEADV 98

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW--ISADTWPPFWESLTLLFQKEVG 159
           L+ DF ++       R + +       R    W   S         S T   Q++  
Sbjct: 99  LEADFTEWSAADDIRRRMCSPSVIRSERRRRKWGQCSTGGSTTRTRSQTPSTQRDSA 155


>gi|254517365|ref|ZP_05129422.1| methyltransferase type 11 [gamma proteobacterium NOR5-3]
 gi|219674203|gb|EED30572.1| methyltransferase type 11 [gamma proteobacterium NOR5-3]
          Length = 232

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 5/124 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94
              + +         V +IGAG G  T  +       +V  ++   +   +L D S    
Sbjct: 63  TDLLIDRLPLRPDHHVADIGAGTGYFTFPVAARVPDGQVYAVDIQPEMLAMLSDRSRSLS 122

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            + +  +               S  +  I +  +            AD   P  + + + 
Sbjct: 123 VDNVTAVLG---SETAPNLSPGSIDVAFIVDAYHEFSHPREMGLALADALRPGGKLILIE 179

Query: 154 FQKE 157
           ++ E
Sbjct: 180 YRAE 183


>gi|219117861|ref|XP_002179717.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408770|gb|EEC48703.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 216

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 36  LKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDI 89
             K  ++       SL     +E+G G G  T+ +L      KV  ++  + F   L+  
Sbjct: 36  ADKSVDAIRTAFGESLPNKVWLELGPGHGFATEYILNYKQPSKVHGVDISEAFRSGLRAK 95

Query: 90  S--SQHPNRLEIIQDDA 104
                   R EI   DA
Sbjct: 96  FVAEIENGRFEIHDKDA 112


>gi|189233963|ref|XP_968577.2| PREDICTED: similar to CG2906 CG2906-PC [Tribolium castaneum]
          Length = 436

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 15/115 (13%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIA-ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            +  KK        +++++ KI  +S+   D   +++IG+G G+L++ML      KV  I
Sbjct: 117 NVKAKKR------HEISVMSKICYDSAVKTDCFYIVDIGSGLGHLSRMLNYGYGFKVCTI 170

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           E       +L   +    N  EI+    L+  F      +  + I   +  NI T
Sbjct: 171 E----AQELLSQQAQNLDNEFEIV----LERKFPGCLKYNKTVHINKRIESNITT 217


>gi|126642229|ref|YP_001085213.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           ATCC 17978]
 gi|184158706|ref|YP_001847045.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           ACICU]
 gi|183210300|gb|ACC57698.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           ACICU]
          Length = 279

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 11/138 (7%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
               VI+ G G G L    L LGA+KV   + D Q     K  +  +     +     L 
Sbjct: 137 KDKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVLATKQNAELNGVLDRLYVG--LP 194

Query: 107 VDFEKFFNISSPIRIIANL---PYNIGTRLLFNWISADTWPPFWESL------TLLFQKE 157
            +F++ F       ++AN+   P           + +D        +            E
Sbjct: 195 EEFDQEFKPQQADVLVANILAGPLMALAPEFAKLLKSDGDFALAGVIEEQVADVSGVYSE 254

Query: 158 VGERITAQKNSPHYGRLS 175
             + +  +K   ++ R+S
Sbjct: 255 FFDILDVEKREENWCRIS 272


>gi|307709667|ref|ZP_07646119.1| ribosomal protein L11 methyltransferase [Streptococcus mitis SK564]
 gi|307619565|gb|EFN98689.1| ribosomal protein L11 methyltransferase [Streptococcus mitis SK564]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P+   + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPDMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|295097324|emb|CBK86414.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 208

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPDSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I   LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPAALLSQL 162


>gi|282857131|ref|ZP_06266377.1| ribosomal protein L11 methyltransferase [Pyramidobacter piscolens
           W5455]
 gi|282585066|gb|EFB90388.1| ribosomal protein L11 methyltransferase [Pyramidobacter piscolens
           W5455]
          Length = 289

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILK---DISSQHPNRLEII 100
              G  V +IG G   L+   L +GA +    + D       ++   +++     +L+I 
Sbjct: 148 LKPGDVVADIGCGTAILSIAALKMGAERAYARDLDPSVVREAVRNTLELNGIAGEKLDIA 207

Query: 101 QDDALK 106
             D LK
Sbjct: 208 VGDLLK 213


>gi|257460669|ref|ZP_05625770.1| methyltransferase small [Campylobacter gracilis RM3268]
 gi|257442000|gb|EEV17142.1| methyltransferase small [Campylobacter gracilis RM3268]
          Length = 413

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 51  VIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           V+++GAG G L  +L     +  + ++E  ++   ILK  SSQ+    EI+  D  +   
Sbjct: 215 VLDVGAGCGILGLLLKRDFKSINLSLLEIQERNLEILKLNSSQNGLAAEILHADFAEFKS 274

Query: 110 EKFFNISSPIRIIANLPYN 128
           EK F+      I++N P+ 
Sbjct: 275 EKRFD-----FIVSNPPFY 288


>gi|240171775|ref|ZP_04750434.1| hypothetical protein MkanA1_20845 [Mycobacterium kansasii ATCC
           12478]
          Length = 297

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
            GQN L+DL         + +   + VI++GA  G+  + LL     +++ IE D ++ P
Sbjct: 55  YGQN-LIDLA-----VGLAETDKPLGVIDVGANIGDSARQLLAKVDARILCIEGDPEYLP 108

Query: 85  ILKD 88
            L+ 
Sbjct: 109 YLER 112


>gi|237745702|ref|ZP_04576182.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377053|gb|EEO27144.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 255

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRQSQYAKQI 115

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 116 EFCVADA 122


>gi|224015407|ref|XP_002297358.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220967958|gb|EED86321.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 267

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNR 96
           I  ++       V+++G G G L       GA++V  IE         + +   +   + 
Sbjct: 186 ICGNADVFKDKVVMDVGTGSGILAVWAAQAGAKRVYAIEY-TDMAKHARRVVKANGVDHI 244

Query: 97  LEIIQD 102
           + +IQ 
Sbjct: 245 VTVIQG 250


>gi|188534708|ref|YP_001908505.1| hypothetical protein ETA_25830 [Erwinia tasmaniensis Et1/99]
 gi|188029750|emb|CAO97629.1| Hypothetical protein ETA_25830 [Erwinia tasmaniensis Et1/99]
          Length = 198

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 16/123 (13%)

Query: 27  QNFLLDLNILKKIA-----------ESSGSLDGITVIEIGAGPGNLTQML--LTLGARKV 73
           Q F+ D      IA           E++     + + E+GAG G LT+ L  L      +
Sbjct: 19  QEFIADPRNTGTIAPSSKALCRAMSEAADWQRCLHIAELGAGEGVLTRHLLSLMREDANL 78

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
              E + +F+  L  +  + P RL+++   A K+  +  F+       + ++PY +  R+
Sbjct: 79  QTFETNPRFYSSLNAMQERDP-RLQVMARSAEKLHGQ--FDAIFSCLPLLSMPYMLRHRI 135

Query: 134 LFN 136
           L  
Sbjct: 136 LKR 138


>gi|169795493|ref|YP_001713286.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Acinetobacter baumannii AYE]
 gi|213158568|ref|YP_002319866.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           AB0057]
 gi|215482978|ref|YP_002325183.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|239501425|ref|ZP_04660735.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           AB900]
 gi|260554554|ref|ZP_05826775.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           ATCC 19606]
 gi|332855188|ref|ZP_08435739.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332866927|ref|ZP_08437268.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6013113]
 gi|332873699|ref|ZP_08441642.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6014059]
 gi|226705026|sp|B7H0I7|PRMA_ACIB3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226705027|sp|B7IC17|PRMA_ACIB5 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226705029|sp|B0V7H8|PRMA_ACIBY RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226705087|sp|A3M6R7|PRMA_ACIBT RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|169148420|emb|CAM86285.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Acinetobacter baumannii AYE]
 gi|193077749|gb|ABO12611.2| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           ATCC 17978]
 gi|213057728|gb|ACJ42630.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           AB0057]
 gi|213985781|gb|ACJ56080.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|260411096|gb|EEX04393.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           ATCC 19606]
 gi|322507483|gb|ADX02937.1| prmA [Acinetobacter baumannii 1656-2]
 gi|323518620|gb|ADX93001.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332727565|gb|EGJ58987.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332734350|gb|EGJ65476.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6013113]
 gi|332738087|gb|EGJ68971.1| ribosomal protein L11 methyltransferase [Acinetobacter baumannii
           6014059]
          Length = 301

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 11/138 (7%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
               VI+ G G G L    L LGA+KV   + D Q     K  +  +     +     L 
Sbjct: 159 KDKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVLATKQNAELNGVLDRLYVG--LP 216

Query: 107 VDFEKFFNISSPIRIIANL---PYNIGTRLLFNWISADTWPPFWESL------TLLFQKE 157
            +F++ F       ++AN+   P           + +D        +            E
Sbjct: 217 EEFDQEFKPQQADVLVANILAGPLMALAPEFAKLLKSDGDFALAGVIEEQVADVSGVYSE 276

Query: 158 VGERITAQKNSPHYGRLS 175
             + +  +K   ++ R+S
Sbjct: 277 FFDILDVEKREENWCRIS 294


>gi|82523937|emb|CAI78659.1| hypothetical protein [uncultured delta proteobacterium]
          Length = 183

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNR 96
           I     SL+G   ++I AG G +     +  AR V +IEKD++   +++          +
Sbjct: 32  IFNLLPSLEGKNFLDIFAGSGGVGLEAASRDARHVYLIEKDKKLAGVIRKNVKSLTLDEK 91

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
             +I  DA     +          + A+ PYN
Sbjct: 92  CTVINFDAETALKDLAKKNCRAEIVFADPPYN 123


>gi|39995555|ref|NP_951506.1| ribosomal protein L11 methyltransferase [Geobacter sulfurreducens
           PCA]
 gi|60390515|sp|Q74G05|PRMA_GEOSL RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|39982318|gb|AAR33779.1| ribosomal protein L11 methyltransferase [Geobacter sulfurreducens
           PCA]
 gi|298504561|gb|ADI83284.1| ribosomal protein L11 methyltransferase [Geobacter sulfurreducens
           KN400]
          Length = 299

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 14/74 (18%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF--------------FPILKDISSQHP 94
             V+++G G G L    + LGAR+VI  + D                   ++    +  P
Sbjct: 166 DRVLDVGTGSGILAIAAVRLGARQVIGTDIDPDAVIVAGENCALNGVEVELVTTPLALIP 225

Query: 95  NRLEIIQDDALKVD 108
            R +++  + L  D
Sbjct: 226 GRFDVVLANILAED 239


>gi|114319653|ref|YP_741336.1| phosphatidyl-N-methylethanolamine N-methyltransferase /
           phosphatidylethanolamine N-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226047|gb|ABI55846.1| phosphatidyl-N-methylethanolamine N-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 232

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
            E +       ++E+G G G L+       AR V+ I+       I +   ++    ++E
Sbjct: 33  VEIANPSPEQRILEVGVGTG-LSLPYYRQDAR-VVGIDISTDMLDIARQRVAEEELGQVE 90

Query: 99  IIQDDALKVDFEKFFNISSPIRII 122
               D L++D E           +
Sbjct: 91  ----DLLEMDAEDLKFEDDSFDCV 110


>gi|329924056|ref|ZP_08279319.1| ribosomal protein L11 methyltransferase [Paenibacillus sp. HGF5]
 gi|328940895|gb|EGG37203.1| ribosomal protein L11 methyltransferase [Paenibacillus sp. HGF5]
          Length = 325

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G  VI++G G G L+     LGA +++ ++ D        +    +   +R+ + + 
Sbjct: 175 IKGGEEVIDVGTGSGILSIGAAHLGASRILALDLDPVAVSSATENTRLNGLEDRITVKES 234

Query: 103 DALKV 107
           D L V
Sbjct: 235 DLLSV 239


>gi|322386663|ref|ZP_08060288.1| ribosomal protein L11 methyltransferase [Streptococcus cristatus
           ATCC 51100]
 gi|321269336|gb|EFX52271.1| ribosomal protein L11 methyltransferase [Streptococcus cristatus
           ATCC 51100]
          Length = 318

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 170 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDKVAVRVAQENIELNPGMENIHVAPG 229

Query: 103 DALK 106
           D L+
Sbjct: 230 DLLR 233


>gi|300692208|ref|YP_003753203.1| cyclopropane-fatty-acyl-phospholipid synthase [Ralstonia
           solanacearum PSI07]
 gi|299079268|emb|CBJ51940.1| Cyclopropane-fatty-acyl-phospholipid synthase [Ralstonia
           solanacearum PSI07]
          Length = 406

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 30  LLDLNI--LKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKV-IVIEKDQQFFPI 85
           L D  I  +  I          T+++IG G G L  +     GAR + + + ++Q     
Sbjct: 155 LDDAQIKKIDHILNKIRLQPDQTLLDIGCGWGALVLRAAQKYGARCLGVTLSQNQFDLAR 214

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            +  +++  +R+EI   D                R +      I +  +F  +     P 
Sbjct: 215 ERVRAARLEDRVEIRLQD---------------YRDLTGTFDRITSVGMFEHVGRKNLPG 259

Query: 146 FWESLTLLF 154
           ++  +  L 
Sbjct: 260 YFRRVHGLL 268


>gi|299537261|ref|ZP_07050564.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1]
 gi|298727502|gb|EFI68074.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1]
          Length = 215

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            IL KI     ++   TV++IG G G LT  L   G   +   +       I K+   +
Sbjct: 34 KAILNKIFNEVMAVPASTVLDIGFGTGVLTAKLYEQG-HSIYGFDFSANMIAIAKEKMPE 92


>gi|295696019|ref|YP_003589257.1| Methyltransferase type 12 [Bacillus tusciae DSM 2912]
 gi|295411621|gb|ADG06113.1| Methyltransferase type 12 [Bacillus tusciae DSM 2912]
          Length = 190

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 18/128 (14%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRL 97
              +G   G+ V++IG GPG  T+M         +V  +EK  Q    L+       N +
Sbjct: 29  IRLTGLAPGMRVMDIGTGPGVFTRMYAEAVGEMGRVYALEKSPQAMAFLRRELQDLKN-V 87

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
           E +  DA     E+ F     + ++           + + +     P            E
Sbjct: 88  EYVLADA-----EQGFGEVPKVDVV----------FITDVLHHVDTPGKIFRNISRVVSE 132

Query: 158 VGERITAQ 165
             + + A+
Sbjct: 133 GAKVLVAE 140


>gi|261405592|ref|YP_003241833.1| 50S ribosomal protein L11 methyltransferase [Paenibacillus sp.
           Y412MC10]
 gi|261282055|gb|ACX64026.1| ribosomal protein L11 methyltransferase [Paenibacillus sp.
           Y412MC10]
          Length = 325

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G  VI++G G G L+     LGA +++ ++ D        +    +   +R+ + + 
Sbjct: 175 IKGGEEVIDVGTGSGILSIGAAHLGASRILALDLDPVAVSSATENTRLNGLEDRITVKES 234

Query: 103 DALKV 107
           D L V
Sbjct: 235 DLLSV 239


>gi|171059118|ref|YP_001791467.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Leptothrix
           cholodnii SP-6]
 gi|170776563|gb|ACB34702.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Leptothrix
           cholodnii SP-6]
          Length = 217

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ+ L    +  ++ +         V+EIG G G +   LL   A++V+ +E   +   +
Sbjct: 57  GQSMLA-PRLEARLLQDLAPHRHEKVLEIGTGSGFM-AALLAHKAQQVVSLETRPELVAM 114

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            ++         +I+  +  + D      ++ P   I
Sbjct: 115 ARENLRHA----KIMNAEVRQADGSDAKAVAGPWDAI 147


>gi|116784985|gb|ABK23546.1| unknown [Picea sitchensis]
          Length = 282

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 24  YMGQNFLLDLNILKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQ 80
            +GQ+      + K++    SG+  G  V++I  G G+LT +L    G R KV  ++   
Sbjct: 74  SLGQH-----RVWKRMAVSWSGAKAGDIVLDICCGSGDLTFLLAEKVGVRGKVTGLDFAN 128

Query: 81  QFFPILKDISSQHPN----RLEIIQDDALKVDFEK 111
           +   I  +  +   N     +E +Q DAL + F  
Sbjct: 129 EHLTIASERQAGSSNACYRNIEWVQGDALNLPFAD 163


>gi|148997825|ref|ZP_01825389.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP11-BS70]
 gi|307068393|ref|YP_003877359.1| hypothetical protein SPAP_1773 [Streptococcus pneumoniae AP200]
 gi|147756324|gb|EDK63366.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP11-BS70]
 gi|306409930|gb|ADM85357.1| hypothetical protein SPAP_1773 [Streptococcus pneumoniae AP200]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGILSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|6685115|gb|AAF23786.1|AF213822_1 hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 333

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++ E+   ++G   I+   G G  ++ +L     +VI  ++D         +  +
Sbjct: 12  PVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGASLVEK 71

Query: 93  HPNRLEIIQDDA 104
           +  RL ++ D  
Sbjct: 72  YKGRLRLVNDCF 83


>gi|71903581|ref|YP_280384.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|71802676|gb|AAX72029.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS6180]
          Length = 208

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           +  H +  + +              FL D  +  KK+ +        +    +   V+++
Sbjct: 22  DSLHDIHEVKVELLNHPFT------FLTDSGVFSKKMVDFGSQVLLETLNFKENERVLDL 75

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L  +      +++ + +   + +  ++ +   + I Q +  + +    F 
Sbjct: 76  GCGYGPLGISLAKVQRVDATLVDINNRALDLARKNATNNQVAVTIFQSNIYE-NISGHFE 134

Query: 115 ISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQK 156
                 II+N P   G R++ + I  +  +      LT++ QK
Sbjct: 135 -----HIISNPPIRAGKRVVHSIIEKSIDFLVVNGDLTIVIQK 172


>gi|121998286|ref|YP_001003073.1| cyclopropane-fatty-acyl-phospholipid synthase [Halorhodospira
           halophila SL1]
 gi|121589691|gb|ABM62271.1| Cyclopropane-fatty-acyl-phospholipid synthase [Halorhodospira
           halophila SL1]
          Length = 409

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 25/139 (17%)

Query: 27  QNFL---------------LDLNILKK-----IAESSGSLDGITVIEIGAGPGNLTQMLL 66
           QNFL               +DL   ++     I        G  V++IG G G++   L 
Sbjct: 129 QNFLDTDMHYSCAYFRDPEMDLESAQRAKAAHIRHKLCLRPGDRVLDIGCGWGSMAIHLA 188

Query: 67  TLGARKVIVIEKDQ---QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS-SPIRII 122
                +V+ +   +   +     +   +   +R+EI   D   V       +S      +
Sbjct: 189 RHEQVQVVGLTLSREQQRLAQE-RVRQAGVADRVEIRLQDYRDVTGPFERIVSVGMFEHV 247

Query: 123 ANLPYNIGTRLLFNWISAD 141
               Y+     +   ++ D
Sbjct: 248 GVPFYDTYFDTIRRLLTED 266


>gi|148548229|ref|YP_001268331.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas putida
           F1]
 gi|148512287|gb|ABQ79147.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas putida
           F1]
          Length = 421

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 36/169 (21%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L++I +         ++EIG+G G+L     T    +V            L +  +Q+ +
Sbjct: 182 LERICQKLELRPDDHLLEIGSGWGSLAIHAATRYGCRVTT--------TTLSE--AQYSH 231

Query: 96  RLEIIQD-------DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            LE +Q          L+ D+         +  I               +     P ++ 
Sbjct: 232 TLERVQALGLGQRVQVLREDYRDLQGTFDKLVSIEM----------IEAVGHRYLPVYFR 281

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
               L + E    + A         +++      +A    D      FP
Sbjct: 282 QCASLIKPEGLMLLQA---------ITIRDQRYAQAQRSVDFIQRYIFP 321


>gi|332704421|ref|ZP_08424509.1| Protein-L-isoaspartate O-methyltransferase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554570|gb|EGJ51614.1| Protein-L-isoaspartate O-methyltransferase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 260

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  + +      G  V+E+G G G    +L  LGAR V  IE   +     ++   +
Sbjct: 115 PVVVAIMTDLLDIEPGSKVLEVGTGSGYQAAVLAALGAR-VHSIEIIPELAEFGRENLER 173

Query: 93  HP-NRLEIIQDD 103
               ++ + Q D
Sbjct: 174 AGFGQVAVHQGD 185


>gi|317970401|ref|ZP_07971791.1| precorrin-6B methylase [Synechococcus sp. CB0205]
          Length = 204

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
                     V ++G G G L   +  L  A  V  +E+D     +L+    +     L 
Sbjct: 42  SHLRPKSDSLVWDVGGGTGALALEIARLMPAGAVHTLERDPDGIELLERNRRRFGIENLH 101

Query: 99  IIQDDA 104
           I Q +A
Sbjct: 102 IHQGEA 107


>gi|313682267|ref|YP_004060005.1| methyltransferase type 11 [Sulfuricurvum kujiense DSM 16994]
 gi|313155127|gb|ADR33805.1| Methyltransferase type 11 [Sulfuricurvum kujiense DSM 16994]
          Length = 264

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +              V++IG GPG L   L  L  ++VI I+   Q    LK     +  
Sbjct: 46  VNDFISHMKLTGDEVVLDIGCGPGTLAVPLAKL-VKEVIAIDFSAQMLEELK----AYAA 100

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRII 122
           R  +       + +E  ++   PI I+
Sbjct: 101 REGVTNIKTYHIGWEDDWSHLPPIDIV 127


>gi|312141444|ref|YP_004008780.1| tRNA (guanine-n(7)-)-methyltransferase [Rhodococcus equi 103S]
 gi|311890783|emb|CBH50102.1| tRNA (guanine-N(7)-)-methyltransferase [Rhodococcus equi 103S]
          Length = 273

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
            D   ++EIG+G G  T  +        +I +E        +L+ +       + +++ D
Sbjct: 98  RDAPLIVEIGSGTGTATAAMAKAEPHVNLIAVEVYRPGLAQLLQLVERNELTNVRVLRGD 157

Query: 104 ALKV 107
           A++V
Sbjct: 158 AVEV 161


>gi|289523242|ref|ZP_06440096.1| ribosomal protein S11 [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503785|gb|EFD24949.1| ribosomal protein S11 [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 163

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             GAR VI +E D++   +L+ I+       +I   D  +          S   + A+ P
Sbjct: 40  RRGARPVIAVEADRRLCSVLRAIAEGKEE-FKIFCLDVRRALPNLIKKEYSFTVVFADPP 98

Query: 127 YNIGT 131
           Y  G 
Sbjct: 99  YGQGW 103


>gi|299822882|ref|ZP_07054768.1| ribosomal protein L11 methyltransferase [Listeria grayi DSM 20601]
 gi|299816411|gb|EFI83649.1| ribosomal protein L11 methyltransferase [Listeria grayi DSM 20601]
          Length = 318

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEI 99
           ++    G T++++G G G L+ +   LGA  V+  + D+       +    +   N + +
Sbjct: 174 ATQLKGGETILDVGTGSGVLSIVSAKLGAETVLATDLDEVAVRAAAENIALNNTENVVTV 233

Query: 100 IQDDALK 106
            Q+D LK
Sbjct: 234 KQNDLLK 240


>gi|227821407|ref|YP_002825377.1| cyclopropane-fatty-acyl-phospholipid synthase [Sinorhizobium fredii
           NGR234]
 gi|227340406|gb|ACP24624.1| cyclopropane-fatty-acyl-phospholipid synthase [Sinorhizobium fredii
           NGR234]
          Length = 418

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 20/200 (10%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
           + IA       G  V+E+G+G G L   L      +V  I   ++   + ++ +++    
Sbjct: 163 RHIAAKLLLEPGQQVLEVGSGWGGLAMYLAEATGVEVTGITLSEEQLRVSRERAARRGLS 222

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +R+     D   +   +F  I S          N G    F  I     P     L  + 
Sbjct: 223 DRVRFELQDYRTLQGRQFDRIVSVGMFEHVGIGNYGN--FFRKIKELLRPDGVMLLHSIG 280

Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           Q  V +          Y                  I        P V ST +  +  +  
Sbjct: 281 Q--VYKPWATNPWIEKY------------IFPGGYIPALSEVLPP-VESTRL-LVKDIEI 324

Query: 215 IPCCLESLKKITQEAFGKRR 234
           +P       +  +E F  RR
Sbjct: 325 LPLHYAWTLRAWRERFVARR 344


>gi|254491570|ref|ZP_05104749.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Methylophaga thiooxidans DMS010]
 gi|224463048|gb|EEF79318.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Methylophaga thiooxydans DMS010]
          Length = 343

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   +G  ++E+G G G+LT  +      A    V     Q   I K + ++  + + II
Sbjct: 110 ADLANGQDILELGCGWGSLTLHMAEKLPYAHITAVSNSQSQRLHIDKQLKARGLSNVRII 169

Query: 101 QDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD----TWPPFWESLTLLF 154
             D   L++D E+F  I S         Y      +  W+S D            +   F
Sbjct: 170 TCDVNELELD-EQFDRIVSVEMFEHMRNYQRLFDKIGQWLSQDGKLFVHIFCHRHVVYPF 228

Query: 155 QKEVGERITAQ 165
           + E  +    +
Sbjct: 229 ETEGDDNWMGR 239


>gi|149926730|ref|ZP_01914990.1| Ubie_methyltran, ubiE/COQ5 methyltransferase family protein
           [Limnobacter sp. MED105]
 gi|149824659|gb|EDM83875.1| Ubie_methyltran, ubiE/COQ5 methyltransferase family protein
           [Limnobacter sp. MED105]
          Length = 266

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 52  IEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           +++G+G G LT+ LL    +  V  ++  Q     LK           ++  + L V+  
Sbjct: 59  VDVGSGTGFLTEHLLNKFPQSAVHAVDLAQGMLTELKRKYPTERLHTHLLNGEELAVEHL 118

Query: 111 KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ-KEVGE 160
              N S  +  +    ++     +  W+S      F   L   FQ  EV  
Sbjct: 119 WIPNHSLLVSGMCAQWFSNIEEAIRRWLSVSNTIAFSVLLDGSFQAWEVAH 169


>gi|149919025|ref|ZP_01907510.1| DNA-methyltransferase-like protein [Plesiocystis pacifica SIR-1]
 gi|149820178|gb|EDM79597.1| DNA-methyltransferase-like protein [Plesiocystis pacifica SIR-1]
          Length = 1245

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHPN 95
           +++ E +    G+ V+E  AG G + +++     R V+ VIE+      IL+        
Sbjct: 357 ERMVELAAIRPGMRVLEPSAGSGAIAEVIRRRHPRAVLEVIERQVSLREILR------GE 410

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             E++ DD        F   +   RI+ N P+
Sbjct: 411 GFELVGDDF-----TSFEAATPYDRIVMNPPF 437


>gi|116622875|ref|YP_825031.1| type 11 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226037|gb|ABJ84746.1| Methyltransferase type 11 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 255

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                G  ++++G G G+LT  +   GAR       D+    I +  ++      +    
Sbjct: 28  LAPSAGERILDVGCGTGHLTAEIAAAGARVT---GVDRSAAMIAQARANFPTLEFDTRDA 84

Query: 103 DALKVDFE 110
            AL+ + E
Sbjct: 85  CALRYEAE 92


>gi|114763021|ref|ZP_01442451.1| S-adenosyl-methyltransferase MraW [Pelagibaca bermudensis HTCC2601]
 gi|114544345|gb|EAU47353.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. HTCC2601]
          Length = 330

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G   + LL  GA KVI I++D     + +     + +RLE+++ +   +D
Sbjct: 38  GAGGYARGLLEAGADKVIGIDRDPLAHQMAQAWIGDYGDRLELVEGNFADMD 89


>gi|291541913|emb|CBL15023.1| ribosomal protein L11 methyltransferase [Ruminococcus bromii L2-63]
          Length = 311

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
             +G +V+++G G G L    L LGA + + ++ D+       + +  +   +R   I  
Sbjct: 168 LKEGDSVLDVGCGSGILGIATLLLGADRAVGVDIDETAVRTAAENAEINGVADRFTAICG 227

Query: 103 DA 104
             
Sbjct: 228 SF 229


>gi|285017543|ref|YP_003375254.1| protein-l-isoaspartate o-methyltransferase [Xanthomonas albilineans
           GPE PC73]
 gi|283472761|emb|CBA15266.1| putative protein-l-isoaspartate o-methyltransferase [Xanthomonas
           albilineans]
          Length = 220

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPN 95
           ++ ++     G  V+EIG G G ++  L  LG R+V+ +E +       +    ++   +
Sbjct: 70  RMLQALDLQAGEDVLEIGTGSGFVSACLSELG-REVVSLEIEAALAGTARANLDAAGLGS 128

Query: 96  RLEIIQDDALKVDFEK 111
            + I   DAL     +
Sbjct: 129 NIRIETADALTWTPGE 144


>gi|289578252|ref|YP_003476879.1| O-methyltransferase family 3 [Thermoanaerobacter italicus Ab9]
 gi|289527965|gb|ADD02317.1| O-methyltransferase family 3 [Thermoanaerobacter italicus Ab9]
          Length = 212

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS--SQHPN 95
           I           ++EIG   G  T ++    ++ +++ IE+D     I K+    ++  +
Sbjct: 48  IVR---LKKPNNILEIGTAIGYSTIIMAKACSKVRIVTIERDINLAEIAKENFKKAKVED 104

Query: 96  RLEIIQDDALKV 107
           R+E+I  +A +V
Sbjct: 105 RIELICGEAQQV 116


>gi|222082787|ref|YP_002542152.1| methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221727466|gb|ACM30555.1| methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 293

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 30  LLDLNI----LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           L+DL +    L+ I E+     G  +++IG G G     L      +  VI  D    P+
Sbjct: 38  LIDLQLSPLGLRAI-ETLDLGAGDIILDIGCGAGQTLLQLAERVGAEGRVIGVD--VAPL 94

Query: 86  LKDISSQHP---NRLEIIQDDALKVD 108
           L +I+S+     +++ +IQ DA  +D
Sbjct: 95  LLEIASRRTEPLSQVRLIQADAQSLD 120


>gi|220935972|ref|YP_002514871.1| Methyltransferase type 11 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997282|gb|ACL73884.1| Methyltransferase type 11 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 204

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           I  +        V+E+ AG G  T  +    AR+V+  +       IL     +     +
Sbjct: 30  ILAADAVRGENRVLEVAAGTGLFTTAIAG-AAREVVATDYATAMVAILAKRVQEAGFQNV 88

Query: 98  EIIQDD--ALKVDFEKF 112
              Q D  AL  D   F
Sbjct: 89  RCEQADIKALHFDRASF 105


>gi|33595778|ref|NP_883421.1| hypothetical protein BPP1102 [Bordetella parapertussis 12822]
 gi|33565857|emb|CAE36403.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 372

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             ++    G T  +IG G G L  +L   G   V   + D +      D   +     R+
Sbjct: 187 VANTPLPGGATAFDIGTGTGVLAAVLARRG-LDVTATDLDPRALACAADNLQRLGLGGRV 245

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            ++Q D         F       ++ N P+
Sbjct: 246 RLLQAD--------LFPPGRADLVVCNPPW 267


>gi|17228117|ref|NP_484665.1| hypothetical protein all0621 [Nostoc sp. PCC 7120]
 gi|17129967|dbj|BAB72579.1| all0621 [Nostoc sp. PCC 7120]
          Length = 261

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEII 100
           +      TV+E+ +  G     L      KV+ +EK+ +   + ++    +   N++EII
Sbjct: 40  ANFQPNETVLELASSFGYSAISLAQRYGVKVVGVEKNPESVVLARENVRVAGLENQIEII 99

Query: 101 QDDALKVD 108
           + D   +D
Sbjct: 100 EGDIFHLD 107


>gi|332291052|ref|YP_004429661.1| protein-L-isoaspartate O-methyltransferase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169138|gb|AEE18393.1| protein-L-isoaspartate O-methyltransferase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 213

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           E      G  V+EIG G G  T +L  LGA KV  IE+ Q+ +
Sbjct: 74  ELMEIKKGDQVLEIGTGSGYQTAVLCELGA-KVYSIERQQELY 115


>gi|315127167|ref|YP_004069170.1| uridylyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315015681|gb|ADT69019.1| uridylyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 872

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 20/90 (22%)

Query: 4   NNKSHSLKTILS------HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG-- 55
           ++++ S+K  L         KI  KK   Q F  D NI  KI          ++IEI   
Sbjct: 747 SSRAQSIKRGLEQALHDPRKKIRFKKSRSQRF-KDFNIKPKIVLRPHPRKDRSLIEIQAV 805

Query: 56  --AGPGNLTQ-------MLLTLGARKVIVI 76
              G   LT+        LL + A ++  +
Sbjct: 806 DIPGL--LTKIAEVFQAYLLHIHAARITTV 833


>gi|284165470|ref|YP_003403749.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284015125|gb|ADB61076.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 266

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
          + ++  ++G   G  V+++G G G   LT          V+ ++       + ++ ++
Sbjct: 32 IARLVNAAGIDPGNRVLDVGCGTGNAALT---ARRSGADVVGLDLAHDMLELARENAA 86


>gi|237729725|ref|ZP_04560206.1| protein-L-isoaspartate O-methyltransferase [Citrobacter sp. 30_2]
 gi|226908331|gb|EEH94249.1| protein-L-isoaspartate O-methyltransferase [Citrobacter sp. 30_2]
          Length = 208

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMMQL 162


>gi|124486526|ref|YP_001031142.1| ATPase [Methanocorpusculum labreanum Z]
 gi|124364067|gb|ABN07875.1| Methyltransferase type 11 [Methanocorpusculum labreanum Z]
          Length = 227

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
             +G   G++V++IG G G L  +           IE  ++     +++       + +I
Sbjct: 30  NYAGLKPGMSVLDIGCGNGTLLNLWHKEFGVSGTGIELQKESASRARNLLQGTG--ITVI 87

Query: 101 QDDALKVDFEKFFNI 115
           + DA     ++ F++
Sbjct: 88  EGDAAAYIPDESFDV 102


>gi|124484869|ref|YP_001029485.1| hypothetical protein Mlab_0040 [Methanocorpusculum labreanum Z]
 gi|124362410|gb|ABN06218.1| Methyltransferase type 12 [Methanocorpusculum labreanum Z]
          Length = 274

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 16/90 (17%)

Query: 3  MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE---------------SSGSLD 47
          MN+     + I +  K   K      F     I+ K+ +               +     
Sbjct: 1  MNDADSEWQEITNKQKNTAKYRTSAEFFSSQIIVDKMMQNLKNGGMARVNDQLTAMEIPS 60

Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
          G +V++IGAGPG L   L   G R V V+E
Sbjct: 61 GASVLDIGAGPGTLAVPLAKNGCR-VTVVE 89


>gi|21328671|gb|AAM48677.1| magnesium-protoporphyrin O-methyltransferase [uncultured marine
           proteobacterium]
          Length = 221

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEI 99
           +    L G  V++ G G G L   L   GA  V+ ++   +   I K     H    L++
Sbjct: 52  QLPADLRGARVLDAGCGTGALAFQLAQAGAD-VVAVDISPKLITIAKQRQPAHVSGTLKL 110

Query: 100 IQDD 103
           +  D
Sbjct: 111 MAGD 114


>gi|87303414|ref|ZP_01086202.1| precorrin-6B methylase [Synechococcus sp. WH 5701]
 gi|87282062|gb|EAQ74024.1| precorrin-6B methylase [Synechococcus sp. WH 5701]
          Length = 172

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLE 98
                    TV ++G G G L   +  L    +V  +E+D +   +L+        + L 
Sbjct: 9   AHLRPRADSTVWDVGGGTGALALEIARLMPLGEVHTLERDPEAIELLERNRRHLAIDNLH 68

Query: 99  IIQDDA 104
           I    A
Sbjct: 69  IHAGQA 74


>gi|116750290|ref|YP_846977.1| hypothetical protein Sfum_2865 [Syntrophobacter fumaroxidans MPOB]
 gi|116699354|gb|ABK18542.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
          Length = 819

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 46/152 (30%), Gaps = 20/152 (13%)

Query: 44  GSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
             L    V+ +GAG G   LT  L   GAR V  +E D     ++ D   ++  RL    
Sbjct: 307 HLLKNPRVLVLGAGGGMDVLTARL--NGARTVDAVELDANVISLVGDTFGEYSGRL---- 360

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
                     + +    +       +   T   F+ I       F  S T          
Sbjct: 361 ----------YGDEKVRLHAADARSFLSRTDTTFDLIQVSLLDSFTASATGGHALSESYL 410

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
            T +  +  Y RL+         T    + P 
Sbjct: 411 YTVEALTDAYRRLAPGGCL--AVTRWLKVPPR 440


>gi|242398066|ref|YP_002993490.1| Predicted DNA methylase [Thermococcus sibiricus MM 739]
 gi|242264459|gb|ACS89141.1| Predicted DNA methylase [Thermococcus sibiricus MM 739]
          Length = 205

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 16/157 (10%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A S G ++G  + ++GAG G L+     +GA+KV  +EKD++   I K+    +   L I
Sbjct: 40  AHSMGDIEGKIIADLGAGTGVLSIGASLMGAKKVYAVEKDKKALEIAKE----NAETLNI 95

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--WISADTWPPFWESLTLLFQKE 157
              + L+V  ++F   +    +I N P+            + A        S+  L ++E
Sbjct: 96  KNIEFLEVSVKEF--DARVDTVIMNPPFGSQNPKADRPFLLKAFEISDVVYSIH-LAKEE 152

Query: 158 VGERITAQKNSPHY---GRLS----VLTGWRTKATMM 187
           V + I A      +    RL+    +   +      +
Sbjct: 153 VRKFIEAFTRDNSFKITNRLTTTFEIPAQFFFHKKRL 189


>gi|294886905|ref|XP_002771912.1| protein arginine n-methyltransferase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239875712|gb|EER03728.1| protein arginine n-methyltransferase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 1618

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 30  LLD--LNILKK--IAESSGSLDG--ITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQ 81
           L D   N+  K  IAE+    +G    VI++G G G L+  L     +  ++   +    
Sbjct: 677 LNDGARNVAYKKAIAEAMRDKEGQIDRVIDVGCGTGILSYYLAECAPKGTEITACDCSWA 736

Query: 82  FFPILKDISSQHPNRLEIIQDD 103
              + +        R+++IQ D
Sbjct: 737 LCEVARRACGP---RVKVIQAD 755


>gi|119470609|ref|XP_001258055.1| hypothetical protein NFIA_055070 [Neosartorya fischeri NRRL 181]
 gi|119406207|gb|EAW16158.1| hypothetical protein NFIA_055070 [Neosartorya fischeri NRRL 181]
          Length = 522

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 27/190 (14%)

Query: 28  NF--LLDLNILKKIAESSGS------LDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK 78
           NF  L+     ++    +              I++G GPG NL   L  L   KV+ +E 
Sbjct: 231 NFFELVHPAYFRQTVALAHLVTRFIKNPCARAIDVGPGPGTNLLAFLELLPQTKVLAVEP 290

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               F  L D      N +  +++D L V  E           +  + Y + T    ++ 
Sbjct: 291 SDIAFQYLTDHFKGETN-ITCVREDFLCVPVE-----------LEEVDYIMSTGASHHFY 338

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW------RTKATMMFDISP 192
           +        + L       + + + +   +     L++L                 D+ P
Sbjct: 339 TDGFLQRSAQWLRPGGYWFIADEMISPFETRKERHLNLLRHHLAYMVPLCFPWPARDVDP 398

Query: 193 HVFFPSPKVT 202
                   V 
Sbjct: 399 RTLSEREFVD 408


>gi|71910757|ref|YP_282307.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|71853539|gb|AAZ51562.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS5005]
          Length = 195

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           +  H +  + +              FL D  +  KK+ +        +    +   V+++
Sbjct: 11  DSLHDIHEVKVELLNHPFT------FLTDSGVFSKKMVDFGSQVLLKTLNFKENERVLDL 64

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L  +      +++ + +   + +  ++ +   + I Q +  + +    F 
Sbjct: 65  GCGYGPLGISLAKVQRVDATLVDINNRALDLARKNATNNQVAVTIFQSNIYE-NISGHFE 123

Query: 115 ISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQK 156
                 II+N P   G R++ + I  +  +      LT++ QK
Sbjct: 124 -----HIISNPPIRAGKRVVHSIIEKSIDFLVVNGDLTIVIQK 161


>gi|15789991|ref|NP_279815.1| hypothetical protein VNG0845C [Halobacterium sp. NRC-1]
 gi|169235714|ref|YP_001688914.1| methyltransferase [Halobacterium salinarum R1]
 gi|10580412|gb|AAG19295.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726780|emb|CAP13566.1| putative methyltransferase [Halobacterium salinarum R1]
          Length = 269

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           + ++  + G   G TV+++G G G   LT          V  ++  +    + +D +   
Sbjct: 32  IARLVSACGVDPGNTVLDVGCGTGNAALT---ARRAGATVTGLDVTRSMLELARDTTQLT 88

Query: 94  P-NRLEIIQDDALKVDFEK 111
             N +  +  DA  + F  
Sbjct: 89  DYNDISWVAGDASTLPFPD 107


>gi|70950181|ref|XP_744436.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524388|emb|CAH79501.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHP-- 94
           I     +L  + +IE G G G LT  L    L    +   E +++ +  +K         
Sbjct: 88  ICLLCNALPNMKIIEAGTGTGCLTYALANCVLPHGIIHTFEYNEERYTEVKKEFEDFEDV 147

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            N ++    D +  +FE F N       +    
Sbjct: 148 INNIKFYHKDIINYNFEDFKNNEIDAIFLDMPN 180


>gi|113474180|ref|YP_720241.1| type 12 methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110165228|gb|ABG49768.1| Methyltransferase type 12 [Trichodesmium erythraeum IMS101]
          Length = 249

 Score = 37.9 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 22/176 (12%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
             +KI +        T+++IG G G  ++ +L     +  +I  D     ++  I +   
Sbjct: 31  TTQKIIQYLHLNATDTLVDIGCGTGIYSKEILHQIQLQQPIICVD-NSAEMVGKIPAN-- 87

Query: 95  NRLEIIQDDALKVDF-----------EKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           +RL  I+ D +K              E   +I     +  NL   +    +F  +    W
Sbjct: 88  SRLNPIEMDGVKFSQKLGIYNKILLKEAIHHIKEKFILFQNLYQRLTPGGIFLLL---LW 144

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM---FDISPHVFF 196
           PP  E        E  E+   Q +      L    G+     ++    ++    +F
Sbjct: 145 PPTIEHPLFTEALESYEKK--QPHYQEMINLLQQVGFVVDMDIIEYPLELPKSQYF 198


>gi|330686063|gb|EGG97685.1| methyltransferase small domain protein [Staphylococcus epidermidis
           VCU121]
          Length = 241

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 13/149 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
                  +I+I +G G +  +L   G++ +  IE  QQ   + +      Q  +RL +  
Sbjct: 39  EIRKKDKIIDICSGNGVIPLILSHKGSQTIEGIEIQQQLVDMAQRSFKYNQLDDRLLMHH 98

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D   V    +F  S    +  N PY        N +          +   +  K     
Sbjct: 99  MDVKNVYH--YFKPSQYTVVTCNPPY-----FKDNQLHQHQKEAHKIARHEILCKLEDCL 151

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           + A+      GRL ++     +A  M D+
Sbjct: 152 MAARHLLKQGGRLYMV----HRAERMMDV 176


>gi|326336063|ref|ZP_08202236.1| type 11 methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691774|gb|EGD33740.1| type 11 methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 231

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 10/120 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
           L G TV+++GA  GNLT  LL+ G  +V  I+  ++      +        + + Q + L
Sbjct: 30  LRGHTVLDVGAATGNLTDHLLSEG-YEVTAIDLSERLIAKAAEKG------ITVQQLNML 82

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
            +D    F+    I  I N   ++ ++         T+    +   L+ Q    ++  AQ
Sbjct: 83  AIDELSTFD---NIVCIGNTLPHLDSKASVQLFLQKTYRQLTQGGKLVLQLVNFQKYFAQ 139


>gi|320333669|ref|YP_004170380.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Deinococcus maricopensis DSM 21211]
 gi|319754958|gb|ADV66715.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Deinococcus maricopensis DSM 21211]
          Length = 279

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +   +    V+++G G G L   +        V   +       + ++ ++++  R+  
Sbjct: 110 SALRGVPEPCVLDVGTGTGALAVAVAHARPDAHVTATDVSDDALALARENATRNGTRVAF 169

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
           +  D L          +    +++N PY
Sbjct: 170 LHADLLH------GAPTGLHLVVSNPPY 191


>gi|312877020|ref|ZP_07736993.1| methyltransferase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796161|gb|EFR12517.1| methyltransferase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 184

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEK 111
           AG GN+    L+ G R+V  +EKD +   ++K+         R  II+ D LK    K
Sbjct: 51  AGTGNVGIEFLSRGVREVTFVEKDMRCINLIKENLKNLDLLKRARIIKGDVLKFLKSK 108


>gi|268323948|emb|CBH37536.1| conserved hypothetical protein, methyltransferase family
           [uncultured archaeon]
          Length = 274

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
                 V++IGAGPG L   L  L  +KV  +E  +    +L++   ++    +E + + 
Sbjct: 60  IKPDFEVLDIGAGPGTLAIPLAKL-VKKVTALEPSKGMINVLEESAVAEGIGNIETVNET 118

Query: 104 ALKVDFEKF 112
             +VD  + 
Sbjct: 119 WQEVDDAEI 127


>gi|94990567|ref|YP_598667.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94544075|gb|ABF34123.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 208

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           +  H +  + +              FL D  +  KK+ +        +    +   V+++
Sbjct: 22  DSLHDIHEVKVELLNHPFT------FLTDSGVFSKKMVDFGSQVLLKTLNFKENERVLDL 75

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L  +      +++ + +   + +  ++ +   + I Q +  + +    F 
Sbjct: 76  GCGYGPLGISLAKVQRVDATLVDINNRALDLARKNATNNQVAVTIFQSNIYE-NISGHFE 134

Query: 115 ISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQK 156
                 II+N P   G R++ + I  +  +      LT++ QK
Sbjct: 135 -----HIISNPPIRAGKRVVHSIIEKSIDFLVVNGDLTIVIQK 172


>gi|83416467|gb|ABC18246.1| unknown [Selenomonas ruminantium]
 gi|83416473|gb|ABC18251.1| unknown [Selenomonas ruminantium]
 gi|83416479|gb|ABC18256.1| unknown [Selenomonas ruminantium]
          Length = 184

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  V+  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SVVAFDYSKKMIELAKRRQSQYAKQI 115

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 116 EFCVADA 122


>gi|15675194|ref|NP_269368.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|13622360|gb|AAK34089.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
          Length = 197

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           +  H +  + +              FL D  +  KK+ +        +    +   V+++
Sbjct: 11  DSLHDIHEVKVELLNHPFT------FLTDSGVFSKKMVDFGSQVLLKTLNFKENERVLDL 64

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L  +      +++ + +   + +  ++ +   + I Q +  + +    F 
Sbjct: 65  GCGYGPLGISLAKVQRVDATLVDINNRALDLARKNATNNQVAVTIFQSNIYE-NISGHFE 123

Query: 115 ISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQK 156
                 II+N P   G R++ + I  +  +      LT++ QK
Sbjct: 124 -----HIISNPPIRAGKRVVHSIIEKSIDFLVVNGDLTIVIQK 161


>gi|57641868|ref|YP_184346.1| DNA methylase [Thermococcus kodakarensis KOD1]
 gi|57160192|dbj|BAD86122.1| predicted DNA methylase [Thermococcus kodakarensis KOD1]
          Length = 209

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRL 97
           A S G ++G  + ++GAG G L    + LGA  V  +E+D++   I ++ +      +++
Sbjct: 40  AHSLGEVEGKVIADLGAGTGVLGIGAVLLGAENVYAVERDKEALEIARENARSLGVEDKI 99

Query: 98  EIIQDDALKV 107
           E +  D  + 
Sbjct: 100 EFVNADVSEF 109


>gi|15920667|ref|NP_376336.1| hypothetical protein ST0455 [Sulfolobus tokodaii str. 7]
 gi|15621450|dbj|BAB65445.1| 201aa long conserved hypothetical protein [Sulfolobus tokodaii
          str. 7]
          Length = 201

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
          D  +L  I +      G  VI+IG G G L    L  GA++VI ++ + 
Sbjct: 26 DTGLLLDIIK---INKGEKVIDIGTGTGILGLHSLFQGAKEVIFVDINP 71


>gi|289565392|ref|ZP_06445842.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|294615414|ref|ZP_06695287.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1636]
 gi|289162882|gb|EFD10732.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291591788|gb|EFF23424.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1636]
          Length = 210

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              D   ++++G G G +   L     R V +++ +++       ++  +  R +I   D
Sbjct: 66  ELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVS----LAQGNAKRNQIEHVD 121

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP-PFWESLTLLFQKEVGERI 162
             + +  +  +  +   I++N P   G +++   ++          +LT++ QK+ G   
Sbjct: 122 IHQSNIYEAVHEETYAAIVSNPPIRAGKKVVHKILTGAYHRLKKGGTLTIVIQKKQGAPS 181

Query: 163 TAQKNSPHYG 172
             +K    +G
Sbjct: 182 AQKKMEETFG 191


>gi|281423909|ref|ZP_06254822.1| putative methyltransferase [Prevotella oris F0302]
 gi|281401997|gb|EFB32828.1| putative methyltransferase [Prevotella oris F0302]
          Length = 176

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDAL 105
           +G T +++ AG G+++  L++ G ++V+ +E D+     ++   ++   ++  +I+ D  
Sbjct: 43  EGATALDLFAGTGSISLELVSRGCKQVVSVEADRDHANFIRQCFAKLKEDKDLLIRGDVF 102

Query: 106 KVDFEKFFNISSPIRIIANLPYNI 129
           +              I A+ PY +
Sbjct: 103 RFLKSCHQQFD---FIFADPPYAL 123


>gi|261206971|ref|ZP_05921660.1| methyltransferase [Enterococcus faecium TC 6]
 gi|260078599|gb|EEW66301.1| methyltransferase [Enterococcus faecium TC 6]
          Length = 201

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              D   ++++G G G +   L     R V +++ +++       ++  +  R +I   D
Sbjct: 57  ELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVS----LAQGNAKRNQIEHVD 112

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP-PFWESLTLLFQKEVGERI 162
             + +  +  +  +   I++N P   G +++   ++          +LT++ QK+ G   
Sbjct: 113 IHQSNIYEAVHEETYAAIVSNPPIRAGKKVVHKILTGAYHRLKKGGTLTIVIQKKQGAPS 172

Query: 163 TAQKNSPHYG 172
             +K    +G
Sbjct: 173 AQKKMEETFG 182


>gi|257069074|ref|YP_003155329.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Brachybacterium faecium DSM 4810]
 gi|256559892|gb|ACU85739.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Brachybacterium faecium DSM 4810]
          Length = 301

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 51  VIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVD 108
           V+++ AG G L   +L  +   +V+ +E D     + +  +    P R  +++ D L  +
Sbjct: 119 VVDLCAGSGALGAAVLDEIPGARVLAVEIDPAAAALTRRNLDRAGPGRGRVLEAD-LCAE 177

Query: 109 FEKFFNISSPIRIIANLPY 127
             +    +    +++N PY
Sbjct: 178 VPELAAAAPVDAVLSNPPY 196


>gi|225374990|ref|ZP_03752211.1| hypothetical protein ROSEINA2194_00613 [Roseburia inulinivorans DSM
           16841]
 gi|225213180|gb|EEG95534.1| hypothetical protein ROSEINA2194_00613 [Roseburia inulinivorans DSM
           16841]
          Length = 241

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           + +  I+  I +        +++EIG G G  +  +L  G   +I  +   +     K  
Sbjct: 47  MKNTPIVMDIIKRYHLHPEQSLLEIGCGEGRDSATVLENG-FHLIATDISPEAINYCKKK 105

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
                ++  ++  D L  D ++ F+    + ++  L
Sbjct: 106 MPDFESKFMVL--DCLSSDLDEKFDFIYSVAVVHML 139


>gi|220910538|ref|YP_002485849.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219867149|gb|ACL47488.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 273

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
             + V+E+G G G+L+  +      K+I ++ +           +++ + L     D LK
Sbjct: 49  KNLHVLEVGCGLGSLSIDIAQSSPGKIIGLDINPSDIDFANRYVNENYSHLS----DILK 104

Query: 107 VDFEKFFNISS 117
                  + S 
Sbjct: 105 FHCGDLSDFSE 115


>gi|50914279|ref|YP_060251.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|94988677|ref|YP_596778.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94992500|ref|YP_600599.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94994489|ref|YP_602587.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|306827290|ref|ZP_07460577.1| methyltransferase domain protein [Streptococcus pyogenes ATCC
           10782]
 gi|50903353|gb|AAT87068.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|94542185|gb|ABF32234.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94546008|gb|ABF36055.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94547997|gb|ABF38043.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|304430437|gb|EFM33459.1| methyltransferase domain protein [Streptococcus pyogenes ATCC
           10782]
          Length = 208

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 5   NKSHSLKTI-LSHYKIIPKKYMGQNFLLDLNI-LKKIAE--------SSGSLDGITVIEI 54
           +  H +  + +              FL D  +  KK+ +        +    +   V+++
Sbjct: 22  DSLHDIHEVKVELLNHPFT------FLTDSGVFSKKMVDFGSQVLLETLNFKENERVLDL 75

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           G G G L   L  +      +++ + +   + +  ++ +   + I Q +  + +    F 
Sbjct: 76  GCGYGPLGISLAKVQRVDATLVDINNRALDLARKNATNNQVAVTIFQSNIYE-NISGHFE 134

Query: 115 ISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWESLTLLFQK 156
                 II+N P   G R++ + I  +  +      LT++ QK
Sbjct: 135 -----HIISNPPIRAGKRVVHSIIEKSIDFLVVNGDLTIVIQK 172


>gi|13471417|ref|NP_102983.1| precorrin 6y methylase [Mesorhizobium loti MAFF303099]
 gi|14022159|dbj|BAB48769.1| precorrin 6y methylase [Mesorhizobium loti MAFF303099]
          Length = 411

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 31  LDLNILKKIAESS-----GSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQ-QFF 83
            D  I K+   +          G  + +IGAG G++  + +L   + + I IE D  +  
Sbjct: 238 HDGQITKREIRAITLSSLAPRRGELLWDIGAGSGSIGIEWMLAHPSMRTIAIEADPTRAV 297

Query: 84  PILKDISSQHPNRLEIIQDDA 104
            I ++ ++     L +++  A
Sbjct: 298 RIHRNAAACGVPGLVVVEGSA 318


>gi|325106620|ref|YP_004267688.1| methyltransferase type 11 [Planctomyces brasiliensis DSM 5305]
 gi|324966888|gb|ADY57666.1| Methyltransferase type 11 [Planctomyces brasiliensis DSM 5305]
          Length = 423

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 15/121 (12%)

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           GA +V  ++ D+    + ++ +  +  +++ +  D      +   N ++   +I + P  
Sbjct: 271 GAEEVTGVDLDEAAVAMARNNAKLNNQKVKFVHADVFPYMRDMLRNGNTYDVVILDPPKL 330

Query: 129 IGT---------------RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGR 173
           I T               RL    +             L+  +E  + I A   S  YGR
Sbjct: 331 INTRGEYDEGRKKYFDLNRLACQLVKPGGLLLSCSCSGLMPPEEFSKTIAASLPSDRYGR 390

Query: 174 L 174
            
Sbjct: 391 F 391


>gi|307309030|ref|ZP_07588710.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
 gi|306900503|gb|EFN31117.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
          Length = 143

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEK 78
          I ++     G+ V+EIG GPG + + +   +G   V+ I++
Sbjct: 12 IVDALPLRWGMRVLEIGCGPGAMAREIAGRIGDGHVLAIDR 52


>gi|316934236|ref|YP_004109218.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris DX-1]
 gi|315601950|gb|ADU44485.1| Cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris DX-1]
          Length = 409

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ--QFFPILKDISSQHP 94
           +++AE+     G +V+EIG G G   +        +++ +   +  + F   +   +   
Sbjct: 182 QRLAEAIDLRPGHSVLEIGCGWGGFAEYAAKTFDVRLVGLTISREQRDFAQKRMFEAGLA 241

Query: 95  NRLEIIQDD 103
           +++EI   D
Sbjct: 242 DKVEIKLQD 250


>gi|206900806|ref|YP_002250671.1| ribosomal protein L11 methyltransferase [Dictyoglomus thermophilum
           H-6-12]
 gi|226710073|sp|B5YDR3|PRMA_DICT6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|206739909|gb|ACI18967.1| ribosomal protein L11 methyltransferase [Dictyoglomus thermophilum
           H-6-12]
          Length = 301

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             +G+ V+++G G G L+ +   LGA KV  I+ D++   + K+ + ++   LE  Q +
Sbjct: 163 LKEGMDVLDVGTGSGILSIVAKKLGAGKVKGIDIDKKAVEVAKENAKRNNVELEFQQAN 221


>gi|167837564|ref|ZP_02464447.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia thailandensis
           MSMB43]
          Length = 255

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +  L      I +E  +     +LK I  Q  + + 
Sbjct: 73  DAIFGHRAPRVLEIGFGMGASTAEIAALRPGDDFIGVEVHEPGVGALLKLIGEQRLSNIR 132

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           I+Q DA++V                      G+    +    D W         L Q   
Sbjct: 133 IVQHDAVEVLEHMIAP---------------GSLDGVHIFFPDPWHKARHHKRRLIQPTF 177

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
             ++ A+     Y   +       +
Sbjct: 178 VAQLAARLQPGAYLHCATDWQNYAE 202


>gi|117165060|emb|CAJ88613.1| putative SAM-dependent methyltransferase [Streptomyces ambofaciens
           ATCC 23877]
          Length = 257

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 32/75 (42%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++ +++ +   +  G  V ++G G G  T++LL   A    VI  D     +    +   
Sbjct: 9   DVTQRLVDICEAPAGGVVADVGCGSGLATELLLARAAHVGAVIGIDPSEHELAIARTRLR 68

Query: 94  PNRLEIIQDDALKVD 108
             ++  ++  A  V+
Sbjct: 69  DPKVRFVRGRAQDVE 83


>gi|120405642|ref|YP_955471.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119958460|gb|ABM15465.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1]
          Length = 280

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 6/120 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
           I+  +A ++G  +   ++++G G G  T  L            I+  +      +  +  
Sbjct: 39  IVDSVAAAAGPREQ--ILDLGCGTGATTLALAERLGAHGGCTGIDISEPMIHAARTRARD 96

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
               +E +  DA    F+         R       +  T   F  +   T P    +   
Sbjct: 97  RNLPVEFVVGDAQSFPFQPNTFDVMVSRFGVMFFDDPTTA--FRNLRRATRPGGRLTFVC 154


>gi|47214536|emb|CAG04556.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           ++S  L+ +   + + PKK   Q+ +  L  L K  + S       V+++G+G G+LT+ 
Sbjct: 56  SQSSMLRHVFRKH-VKPKK---QHEIRKLGTLVK--QLSEQTACSRVVDVGSGQGHLTRF 109

Query: 65  LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           L       V  IE D     +     +Q    LE
Sbjct: 110 LTFGLGLSVTAIEADGALVAMATKFDAQLVCALE 143


>gi|33600304|ref|NP_887864.1| hypothetical protein BB1318 [Bordetella bronchiseptica RB50]
 gi|33567903|emb|CAE31816.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 372

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             ++    G T  +IG G G L  +L   G   V   + D +      D   +     R+
Sbjct: 187 VANTPLPGGATAFDIGTGTGVLAAVLARRG-LDVTATDLDPRALACAADNLQRLGLGGRV 245

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            ++Q D         F       ++ N P+
Sbjct: 246 RLLQAD--------LFPPGRADLVVCNPPW 267


>gi|83952077|ref|ZP_00960809.1| hypothetical protein ISM_15980 [Roseovarius nubinhibens ISM]
 gi|83837083|gb|EAP76380.1| hypothetical protein ISM_15980 [Roseovarius nubinhibens ISM]
          Length = 200

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDAL 105
            V+E   G G  T M   L   KV  +E D ++  ++++  +Q+P    + +++I  D  
Sbjct: 31  VVLEY--GSGGSTVMAGELPNTKVFSVESDPEWAAMMREWFAQNPPAQGSEVDVIWADLG 88

Query: 106 KVDFEKFFNISSPIRIIANLP 126
           +     +    S     A  P
Sbjct: 89  ETKEWGYPKNRSGYMRYARYP 109


>gi|328952121|ref|YP_004369455.1| Methyltransferase type 12 [Desulfobacca acetoxidans DSM 11109]
 gi|328452445|gb|AEB08274.1| Methyltransferase type 12 [Desulfobacca acetoxidans DSM 11109]
          Length = 295

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 11/153 (7%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +         +EIG G G  +  L   G  +V+ IE D Q     ++        +E+I 
Sbjct: 85  APIIRPSWQTLEIGCGLGVFSDWLHRQGC-EVVGIEPDSQQAAYAREHYG-----IEVIN 138

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
           D   ++     F+  +   +I + P  +        ++      F E+  +L  K    R
Sbjct: 139 DRFEEIAITSGFDFIASSHVIEHFPAPLAFLQKVRSLAKPEAWLFLETPNILAPKVGPRR 198

Query: 162 ITAQKNSPHYG-----RLSVLTGWRTKATMMFD 189
           + +  ++ ++       L    GW  +   +F 
Sbjct: 199 VFSLPHNYYFSPQTLTALLAQAGWHVEKMRVFR 231


>gi|331698196|ref|YP_004334435.1| type 11 methyltransferase [Pseudonocardia dioxanivorans CB1190]
 gi|326952885|gb|AEA26582.1| Methyltransferase type 11 [Pseudonocardia dioxanivorans CB1190]
          Length = 234

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 43 SGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQ 80
          +G   G  V+E+G G GNLT        A  V  I+ D 
Sbjct: 43 AGIEPGTRVLEVGCGTGNLTILAAQAEPAAVVTGIDPDP 81


>gi|319945759|ref|ZP_08020010.1| adenine-specific methyltransferase [Streptococcus australis ATCC
           700641]
 gi|319748119|gb|EFW00362.1| adenine-specific methyltransferase [Streptococcus australis ATCC
           700641]
          Length = 321

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRL 97
            +   S D + V+E+G+G GNL Q L+    R +  + +E D     +   ++      +
Sbjct: 106 VDQLASSDQVDVLEMGSGTGNLAQTLMNNCQRSLDYLGLEIDDLLIDLAASMAEVMKADV 165

Query: 98  EIIQDDALK 106
              Q DA++
Sbjct: 166 NFAQGDAIR 174


>gi|299537848|ref|ZP_07051137.1| hypothetical protein BFZC1_17599 [Lysinibacillus fusiformis ZC1]
 gi|298726827|gb|EFI67413.1| hypothetical protein BFZC1_17599 [Lysinibacillus fusiformis ZC1]
          Length = 278

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 17/79 (21%)

Query: 21  PKKYMGQNFLLDLNIL-------KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
            +K +GQ    D           KKI          +V+EIG G GN T  L      K+
Sbjct: 45  ARKKVGQ---TDPYAALIFQELQKKI------EPEHSVLEIGPGWGNYTFPLAD-KVSKL 94

Query: 74  IVIEKDQQFFPILKDISSQ 92
             ++  +     L+    Q
Sbjct: 95  TCVDSSKSILHYLQQCMPQ 113


>gi|299134497|ref|ZP_07027690.1| Methyltransferase type 11 [Afipia sp. 1NLS2]
 gi|298591244|gb|EFI51446.1| Methyltransferase type 11 [Afipia sp. 1NLS2]
          Length = 342

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              +   DG  ++E+G G G+LT  +     R +I    + +   +  +  +       +
Sbjct: 109 VRHADLADGQAILELGCGWGSLTLFMAERFPRSIITAVSNSRPQRLHIETQAAERGLANV 168

Query: 100 IQDDALKVDFEKFFNISSPIRIIAN-LPYNIG 130
                L  D  +F   S   RI++  +  ++ 
Sbjct: 169 R---ILTADMNEFTAGSQYDRIVSVEMFEHMS 197


>gi|297157652|gb|ADI07364.1| hypothetical protein SBI_04243 [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            V+++G G G+LT +L   G   V  ++   +     +   +        +  DA
Sbjct: 49  RVLDVGCGTGSLTHLLAAAG-HHVTGVDLSPRMVDQARAKLTAAGLTGTFLVGDA 102


>gi|289522449|ref|ZP_06439303.1| UbiE/COQ5 methyltransferase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504285|gb|EFD25449.1| UbiE/COQ5 methyltransferase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 233

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 35  ILKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           ++ KI ++          G+ +++IG G GNL+  L  LGAR V  I+  +      ++ 
Sbjct: 24  LVDKIEKAVIYEFLKPESGMEILDIGCGTGNLSLELAKLGAR-VTGIDISEAMLVKAREK 82

Query: 90  SSQHPNRLEIIQDDALKVDFEK 111
           +++    +     DA  + FE 
Sbjct: 83  AARENLCINFCCADANDLPFED 104


>gi|260592094|ref|ZP_05857552.1| putative methyltransferase [Prevotella veroralis F0319]
 gi|260535972|gb|EEX18589.1| putative methyltransferase [Prevotella veroralis F0319]
          Length = 183

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI-IQDDALKVDFEKFFN 114
           AG G+++  LL+ G ++V+ +EKD+     +     +      + I+ D  +        
Sbjct: 52  AGTGSISLELLSRGCKEVVSVEKDRDHARFIAQCMEKIGADEHVLIKGDVFRFIKSCHQQ 111

Query: 115 ISSPIRIIANLPYNI 129
                 I A+ PY +
Sbjct: 112 FD---FIFADPPYAL 123


>gi|213618984|ref|ZP_03372810.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 173

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQL 162


>gi|254467796|ref|ZP_05081202.1| protein-L-isoaspartate O-methyltransferase [beta proteobacterium
           KB13]
 gi|207086606|gb|EDZ63889.1| protein-L-isoaspartate O-methyltransferase [beta proteobacterium
           KB13]
          Length = 208

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  KI +S      +  + IG G G     LL    +++  ++ D +F    + +  +
Sbjct: 54  PKVEAKIIDSLELNKKMKALHIGTGSGFF-AALLASHVKELYTVDIDSEFIAHAQQLLKK 112

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
           +            K++  K+   +         PY++   ++F        P   E L +
Sbjct: 113 N------------KLNNVKYIVSNGFNGYYQEAPYDL---IVFTASHVKEPPGLREQLNI 157

Query: 153 LFQKEVGERITAQKNSPHYGRLS---VLTGWRTKATM 186
             Q  + E   + +++    RLS          +A++
Sbjct: 158 DGQLFIFEGDQSLQHAKVIKRLSDSEYSAQTMFEASI 194


>gi|154149936|ref|YP_001403554.1| methyltransferase type 11 [Candidatus Methanoregula boonei 6A8]
 gi|153998488|gb|ABS54911.1| Methyltransferase type 11 [Methanoregula boonei 6A8]
          Length = 278

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKD 88
           +D    + + + +G   G+ V+++G G G+++ +L  L  ++  VI  D+      I +D
Sbjct: 29  VDDMTKRMLVD-AGIGPGMHVLDVGCGSGDVSHLLAKLVGKEGHVIGIDRDGPSLEIARD 87

Query: 89  ISSQHP-NRLEIIQDDALKVDFEK 111
              +     +  IQ D  ++  E 
Sbjct: 88  RIRKLDLPNITFIQRDICELSPEP 111


>gi|150403509|ref|YP_001330803.1| type 11 methyltransferase [Methanococcus maripaludis C7]
 gi|150034539|gb|ABR66652.1| Methyltransferase type 11 [Methanococcus maripaludis C7]
          Length = 218

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-- 90
             I + I       +G  V +IG+GPG L+  L       +I ++  +    I       
Sbjct: 29  PVIAENIINRFKITNGTCV-DIGSGPGALSIALAKQTDLSIIALDFSKHMNEIASKNIED 87

Query: 91  SQHPNRLEIIQDDA 104
           +   +R++I+Q D 
Sbjct: 88  ANLNDRIQIVQGDV 101


>gi|15616471|ref|NP_244777.1| biotin synthesis BioC proein [Bacillus halodurans C-125]
 gi|10176534|dbj|BAB07628.1| biotin synthesis BioC proein [Bacillus halodurans C-125]
          Length = 271

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           +++IG G G LT+  L    +  I  ++  +Q   + +   S HPN ++ IQ D  K+  
Sbjct: 51  ILDIGCGTGWLTRECLKSFPQATIDAVDLSKQMLEVAEKNVSSHPN-VQFIQGDIEKMVR 109

Query: 110 EK 111
           EK
Sbjct: 110 EK 111


>gi|14591631|ref|NP_143713.1| protein-L-isoaspartate O-methyltransferase [Pyrococcus horikoshii
           OT3]
 gi|3258325|dbj|BAA31008.1| 272aa long hypothetical L-isoaspartyl protein carboxyl
           methyltransferase [Pyrococcus horikoshii OT3]
          Length = 272

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + E +    G+ V+E+G G G    ++  +    V  IE+  +     K    +
Sbjct: 119 PHMVAIMLEIADLKPGMNVLEVGTGSGWNAALIAEIVKGDVYSIERIPELVEFAKRNLER 178

Query: 93  HP-NRLEIIQDD 103
                + +I  D
Sbjct: 179 AGVKNVHVILGD 190


>gi|323493640|ref|ZP_08098761.1| protein-L-isoaspartate O-methyltransferase [Vibrio brasiliensis LMG
           20546]
 gi|323312163|gb|EGA65306.1| protein-L-isoaspartate O-methyltransferase [Vibrio brasiliensis LMG
           20546]
          Length = 208

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L    V  IE+       L+  + +
Sbjct: 61  PYIVAKMTEMLELNRDSNVLEIGTGSGYQTAVLAQL-VDHVYSIER----IKALQWEAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D  + +    P   I
Sbjct: 116 RLKQLDIYNISTKHGDGWQGWLAKGPFDAI 145


>gi|296269555|ref|YP_003652187.1| type 11 methyltransferase [Thermobispora bispora DSM 43833]
 gi|296092342|gb|ADG88294.1| Methyltransferase type 11 [Thermobispora bispora DSM 43833]
          Length = 258

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 10/75 (13%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           L+D        E+        VI++G GPG+L   LL    +  VI ++ D     + + 
Sbjct: 32  LIDA------VEAGAGRPDPLVIDLGCGPGSLAVRLLQRLPQATVIAVDTDPVLLALGRA 85

Query: 89  ISSQHPNRLEIIQDD 103
                P    +I  D
Sbjct: 86  AYGDVPG---LIFAD 97


>gi|284164090|ref|YP_003402369.1| tRNA methyltransferase complex GCD14 subunit [Haloterrigena
           turkmenica DSM 5511]
 gi|284013745|gb|ADB59696.1| tRNA methyltransferase complex GCD14 subunit [Haloterrigena
           turkmenica DSM 5511]
          Length = 270

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
           G   G  V++ G G G L   +   GA +V+  E+D +F  + ++        + +++  
Sbjct: 109 GVSQGDRVLDTGTGTGVLAASMARAGA-EVVTYERDPEFADVARENMKLGGVDDSVDVRT 167

Query: 102 DD 103
            D
Sbjct: 168 GD 169


>gi|268609987|ref|ZP_06143714.1| hypothetical protein RflaF_10895 [Ruminococcus flavefaciens FD-1]
          Length = 188

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQHP 94
           +K+ +         ++E G G G+ T  L+       ++I+IE+++ F   L+       
Sbjct: 26  RKMMQPLDFSLADVIVEYGPGTGSFTSELIAGRKPDTELILIEQNEHFCRQLEAKYGSMK 85

Query: 95  NRLEIIQDDA 104
           N + I+  +A
Sbjct: 86  N-VHIVHGNA 94


>gi|225378659|ref|ZP_03755880.1| hypothetical protein ROSEINA2194_04328 [Roseburia inulinivorans DSM
           16841]
 gi|225209496|gb|EEG91850.1| hypothetical protein ROSEINA2194_04328 [Roseburia inulinivorans DSM
           16841]
          Length = 247

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISS--QHPNRLE 98
           + +  G  V+++G G G +  +L+     A     +E  ++   + +   +     ++++
Sbjct: 43  AKAKAGEKVLDLGTGTGII-PILMEAKTDAADFTALEIQEESADMARRSVAYNHLEDKIK 101

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           ++  D    D    F  SS   I  N PY IGT
Sbjct: 102 VVTGDI--RDASNIFGASSFHVITTNPPYMIGT 132


>gi|212704295|ref|ZP_03312423.1| hypothetical protein DESPIG_02350 [Desulfovibrio piger ATCC 29098]
 gi|212672257|gb|EEB32740.1| hypothetical protein DESPIG_02350 [Desulfovibrio piger ATCC 29098]
          Length = 298

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDIS--S 91
           +  I    G+  G T+IE G G G LT  L        +V+  E  ++F  + +     +
Sbjct: 84  IAYICLRLGAGPGRTIIEAGCGSGGLTTGLSWFCGPTGRVVSHEAREEFMKLARRNLEWA 143

Query: 92  QHPNRLEIIQDDA 104
              + +EI+  D 
Sbjct: 144 GVGDNVEIVHRDI 156


>gi|254452134|ref|ZP_05065571.1| cyclopropane-fatty-acyl-phospholipid synthase [Octadecabacter
           antarcticus 238]
 gi|198266540|gb|EDY90810.1| cyclopropane-fatty-acyl-phospholipid synthase [Octadecabacter
           antarcticus 238]
          Length = 407

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 13/116 (11%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             + +  G   G  V+EIG G G   +        +V  +   Q+ +    D   +    
Sbjct: 179 ASMVDEMGVKAGDHVLEIGCGWGGFAEYAAKERGLRVTALTISQEQYNYAVDRIEKAG-- 236

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
                 D +    + + + +            I +  +F  +    WP +++++  
Sbjct: 237 ----LSDLVTFKMQDYRDETGTYD-------GIASIEMFEAVGEKYWPTYFQTVHA 281


>gi|160872310|ref|ZP_02062442.1| ribosomal protein L11 methyltransferase [Rickettsiella grylli]
 gi|159121109|gb|EDP46447.1| ribosomal protein L11 methyltransferase [Rickettsiella grylli]
          Length = 295

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +   L+  T+I+ G G G L    + LGA++V  I+ D Q        + ++      I 
Sbjct: 153 ACEILEDKTMIDYGCGSGILAVAAIKLGAKQVSAIDHDPQAVTACAMNAERNE-----IT 207

Query: 102 DDALKVDFEKFFNISSPIRII 122
           D+ LKV F   F    P+ I+
Sbjct: 208 DEKLKVYFPANFRYQEPVDIV 228


>gi|33596401|ref|NP_884044.1| putative biotin synthesis protein [Bordetella parapertussis
          12822]
 gi|33566170|emb|CAE37074.1| putative biotin synthesis protein [Bordetella parapertussis]
          Length = 478

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            + ++IA +        ++EIG G G LT+ L     R    I
Sbjct: 32 EQLAERIA-ALPLPAEPRILEIGCGTGLLTRALARRLGRADWTI 74


>gi|323449975|gb|EGB05859.1| hypothetical protein AURANDRAFT_30097 [Aureococcus anophagefferens]
          Length = 535

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 29  FLLDLNILKKIAES------SGSLDGITVIEIG--AGPGNLTQMLLTLGARKVIVIEKDQ 80
           FL        + E+      +  L    V+EIG   G G LT         ++I  E D 
Sbjct: 43  FLFSDCWTTDVVEAKTLAMFAAMLKARRVLEIGMFTGYGALTIAEALPADGEMITFEIDP 102

Query: 81  QFFPILKDIS--SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
                 + +   S H +++++   DAL        +    +  + 
Sbjct: 103 FLERFARPVFDASPHGSKIDVKIGDALANLKAWPADKKFDMVFVD 147


>gi|282866866|ref|ZP_06275900.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
 gi|282558265|gb|EFB63833.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
          Length = 265

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 33  LNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             +   I E +G  LDG   +++GAG G  T +L T GAR V  +E        L     
Sbjct: 29  PALFDAIEELAGRPLDGARAVDVGAGTGIATLLLHTRGAR-VTAVEPGPGMAAELHRSLP 87

Query: 92  QHPNRLEIIQDD 103
             P    +++ D
Sbjct: 88  SVP----VVRGD 95


>gi|120612212|ref|YP_971890.1| cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax citrulli
           AAC00-1]
 gi|120590676|gb|ABM34116.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax citrulli
           AAC00-1]
          Length = 352

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 9/136 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD----QQFFPILKDISSQHPNR 96
           E +G  DG  ++E+G G G+LT  +       +I    +    +++     + + +    
Sbjct: 115 EHAGLQDGQRILELGCGWGSLTLWMAARYPASMITAISNSHSQRRYIE--AEAALRGLRN 172

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           + +   D    D  + F+    I  +    +       F+ ++          + +   +
Sbjct: 173 VRVQTCDFNVFDTAERFD---RIVSVEMFEHLRNWPRAFSHVARWLADDGRFFMHVFTHR 229

Query: 157 EVGERITAQKNSPHYG 172
           E      A+  S    
Sbjct: 230 EAPYPFVARDASDWMS 245


>gi|54298077|ref|YP_124446.1| hypothetical protein lpp2134 [Legionella pneumophila str. Paris]
 gi|148359720|ref|YP_001250927.1| hypothetical protein LPC_1642 [Legionella pneumophila str. Corby]
 gi|296107763|ref|YP_003619464.1| hypothetical protein lpa_03128 [Legionella pneumophila 2300/99
           Alcoy]
 gi|53751862|emb|CAH13286.1| hypothetical protein lpp2134 [Legionella pneumophila str. Paris]
 gi|148281493|gb|ABQ55581.1| hypothetical protein LPC_1642 [Legionella pneumophila str. Corby]
 gi|295649665|gb|ADG25512.1| hypothetical protein lpa_03128 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 253

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 50/139 (35%), Gaps = 9/139 (6%)

Query: 50  TVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            +++IG G G+ T +L   +   +V+ I+  +Q         ++     E+      +  
Sbjct: 33  NILDIGCGDGHYTSLLAGKVKHGQVLGIDSSEQMIMHANQQWARTGLSFEVHN--IEEFH 90

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL---TLLFQ--KEVGERIT 163
             + F+++     +     +I    +F+ +  +       S      + Q  KE+ ++  
Sbjct: 91  QPQSFDLALSFWCLHWTNIHISFPNIFHLLKREGKLYAVMSSFSDHSILQTWKELAKQNL 150

Query: 164 AQKNSPHYGRLSVLTGWRT 182
            +  +  Y    +   +  
Sbjct: 151 YRDLTEQYISP-INEQYFY 168


>gi|71003794|ref|XP_756563.1| hypothetical protein UM00416.1 [Ustilago maydis 521]
 gi|46096094|gb|EAK81327.1| hypothetical protein UM00416.1 [Ustilago maydis 521]
          Length = 1878

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 45   SLDGITVIEIGAGPGNLTQMLLTLGAR---------KVIVIEKDQQFFPILKDISSQHPN 95
              D + V E+GAG G L + +L    +         +  ++E   +     +     H  
Sbjct: 1547 PYDDLVVYELGAGSGALARGILDYLEQNEPEIYTRTRYKIVEISARLAAEQRRKLGGHVE 1606

Query: 96   RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            R E++  D L  +            I   +  N+   ++ 
Sbjct: 1607 RSEVVNQDILTWNRGVVQEPC--FVIALEVFDNLAHDVVR 1644


>gi|317057237|ref|YP_004105704.1| 50S ribosomal protein L11 methyltransferase [Ruminococcus albus 7]
 gi|315449506|gb|ADU23070.1| ribosomal protein L11 methyltransferase [Ruminococcus albus 7]
          Length = 322

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 19/165 (11%)

Query: 11  KTILSHYKIIPKKYMG--QNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLL 66
           + IL    I P    G  Q+     N  +   E       DG  V+++G G G L+   +
Sbjct: 146 RKILE---IDPASSFGTGQH-----NTTQLCLELVEKYLGDGDRVLDLGCGSGILSIGAV 197

Query: 67  TLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
            LGA++   I+ D     I  + + ++     +   I  + +  D      I +   ++ 
Sbjct: 198 LLGAKECTAIDIDANSVKIAGENAEKNKIPAEKYHAICGNVID-DPALVAEIGTGFDMVC 256

Query: 124 ---NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
                   IG   LF              +  + + EV + I AQ
Sbjct: 257 ANIVADVLIGMSGLFKGFLKKGGRLIVSGIIDMRKDEVLDVIKAQ 301


>gi|297460055|ref|XP_001790287.2| PREDICTED: tRNA methyltransferase 61 homolog B (S. cerevisiae) [Bos
           taurus]
          Length = 654

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 15/120 (12%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD----- 88
           +  I        G TV+E G+G G ++  L        +VI  E  +    +        
Sbjct: 421 INMILSMMNIHPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEIRKDHHKLAMKNYRHW 480

Query: 89  -------ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                     + P+ ++ I  D L    E   +++     +  L   +   +LF  +   
Sbjct: 481 RDSWKISHVEEWPDNVDFIHKDILGAT-EDIQSLTFDAVALDMLNPQVALPVLFPNLKQG 539


>gi|296243046|ref|YP_003650533.1| hypothetical protein Tagg_1320 [Thermosphaera aggregans DSM 11486]
 gi|296095630|gb|ADG91581.1| conserved hypothetical protein [Thermosphaera aggregans DSM 11486]
          Length = 161

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQH 93
           +++ + S +     + ++G G G  L   +     +K + IEKD +      LK   +  
Sbjct: 16  REMLKLSNAGPDDVLYDLGCGDGRILITAVKEFNVKKAVGIEKDLERVKEASLKIKEANI 75

Query: 94  PNRLEIIQDDALKVDFEK 111
            +R  II  D  +V  E+
Sbjct: 76  SDRAFIIHGDFFEVSIEE 93


>gi|229820850|ref|YP_002882376.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
 gi|229566763|gb|ACQ80614.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
          Length = 245

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 29/175 (16%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           V+++GAG G LT+ L+  G R+V+ ++ D +    L                DA     E
Sbjct: 40  VLDLGAGSGKLTRALVD-GVRRVVAVDPDARMLDALSARLPDV---------DARAGSAE 89

Query: 111 KFFNISSPIRII------ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
                   +  +              +R +   +          ++      E+   + A
Sbjct: 90  SIPRAPGSVDAVVVGQAWHWFDAGRASREIARVLRPGGSLGLVWNIR-DPASEIAASLAA 148

Query: 165 QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCL 219
                 +           +A ++ D  P V  P   V  TV+ +   L P     
Sbjct: 149 IARPSDH-----------EAQVLGD-GPKVPEPFGAVERTVVRWTRRLRPEDVVD 191


>gi|195978059|ref|YP_002123303.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225868610|ref|YP_002744558.1| methyltransferase [Streptococcus equi subsp. zooepidemicus]
 gi|225870431|ref|YP_002746378.1| methyltransferase [Streptococcus equi subsp. equi 4047]
 gi|195974764|gb|ACG62290.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225699835|emb|CAW93681.1| putative methyltransferase [Streptococcus equi subsp. equi 4047]
 gi|225701886|emb|CAW99374.1| putative methyltransferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 209

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 18/165 (10%)

Query: 25  MGQNF--LLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ+F  L D  +  K++ +        +    +G  ++++G G G L   L      + 
Sbjct: 35  LGQSFTFLTDSGVFSKRMVDFGSQVLLNTLDFQEGDRLLDLGCGYGPLGLSLAKAQGVEA 94

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + K  +  +     I Q +        F        II+N P   G ++
Sbjct: 95  TLVDINHRAVGLAKQNAESNQVEATIFQSNLYDGVTGTF------EHIISNPPIRAGKKV 148

Query: 134 LFNWISAD-TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177
           +   I     +      LT++ QK+ G      K    +G +++L
Sbjct: 149 VHEIIEKSIDFLTKGGDLTVVIQKKQGAPSAKDKMEAVFGNVTIL 193


>gi|170290568|ref|YP_001737384.1| spermine synthase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|229559958|sp|B1L5H2|SPEE_KORCO RecName: Full=Probable spermidine synthase; AltName:
           Full=Putrescine aminopropyltransferase; Short=PAPT;
           AltName: Full=SPDSY
 gi|170174648|gb|ACB07701.1| Spermine synthase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 321

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN------RLEIIQD 102
             V+ IG G G   + +L     +V ++E D+     +K    + P       RL++I  
Sbjct: 99  EKVLIIGGGDGGALREVLKHPVGEVTLVELDKSVIETVKKHIPEVPGGSFEDPRLKLIIG 158

Query: 103 DALKV 107
           D  K 
Sbjct: 159 DGRKY 163


>gi|160937640|ref|ZP_02085001.1| hypothetical protein CLOBOL_02531 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439709|gb|EDP17459.1| hypothetical protein CLOBOL_02531 [Clostridium bolteae ATCC
          BAA-613]
          Length = 1314

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 3  MNNKSHSLKTILSHYKIIP---KKYM-GQ------NFLLDLNILKKIAESSGSLDGITVI 52
          M + S+ +  +   Y   P   +K +  Q      + L D  I + + E         V+
Sbjct: 1  MKDISYEILDLFRQYGSSPEGIRKALDSQSGPEVLHALSD--IRENLLEWLDYTGCGEVL 58

Query: 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
          +IG+G G LT +L +  A   ++ E D+   
Sbjct: 59 QIGSGYGVLTGLLASRCAHVAVMDEADENLA 89


>gi|126177977|ref|YP_001045942.1| methyltransferase type 11 [Methanoculleus marisnigri JR1]
 gi|125860771|gb|ABN55960.1| Methyltransferase type 11 [Methanoculleus marisnigri JR1]
          Length = 213

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KDIS 90
             I ++I E  G   G   ++IG+GPG+L   L    A  V +++   +   I       
Sbjct: 29  PVIAQQIIERCGISRG-RCLDIGSGPGSLGIALAQASALAVTLLDSSPEMIAIAGGNVRE 87

Query: 91  SQHPNRLEIIQDDA 104
           +    R+ ++  D 
Sbjct: 88  AGLSGRVALLSGDV 101


>gi|51891645|ref|YP_074336.1| ribosomal protein L11 methyltransferase [Symbiobacterium
           thermophilum IAM 14863]
 gi|60390360|sp|Q67S51|PRMA_SYMTH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|51855334|dbj|BAD39492.1| ribosomal protein L11 methyltransferase [Symbiobacterium
           thermophilum IAM 14863]
          Length = 304

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              G  VI++G G G L      LGA +V+ I+ D       ++ + ++   +++
Sbjct: 167 VTPGSRVIDVGTGSGILAVAAKHLGAAEVVAIDVDPVAVDAARENAGRNGVEIDV 221


>gi|39933803|ref|NP_946079.1| putative S-adenosylmethionine:diacylgycerolhomoserine-N-
           methyltransferase BtaB [Rhodopseudomonas palustris
           CGA009]
 gi|39647650|emb|CAE26170.1| putative BtaB protein,
           S-adenosylmethionine:diacylgycerolhomoserine-N-
           methyltransf erase [Rhodopseudomonas palustris CGA009]
          Length = 245

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 14/160 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQH 93
            ++        G TV+E+G G G NL Q  +     K    +   +     I     +  
Sbjct: 56  DRLIAELQPNAGETVLEVGCGTGRNLIQASIRYREAKFYGFDVSTEMLTSAISSIEGAGL 115

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
             R+++   DA     +  F  +     +  + Y++             W    +     
Sbjct: 116 MARVKVAHGDATAFTAQAVFGQAVAFDHV-MISYSLS--------MIPDWTAVIDRAVAN 166

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             K  G+           G  SV      +   +FD++P 
Sbjct: 167 L-KPGGKLHIVDFGD-QRGLPSVARKLLRRWLTLFDVTPR 204


>gi|33602310|ref|NP_889870.1| putative biotin synthesis protein [Bordetella bronchiseptica
          RB50]
 gi|33576749|emb|CAE33827.1| putative biotin synthesis protein [Bordetella bronchiseptica
          RB50]
          Length = 478

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            + ++IA +        ++EIG G G LT+ L     R    I
Sbjct: 32 EQLAERIA-ALPLPAEPRILEIGCGTGLLTRALARRLGRADWTI 74


>gi|1709155|sp|P50196|MTE8_ECOLX RecName: Full=Modification methylase Eco47II; Short=M.Eco47II;
           AltName: Full=Cytosine-specific methyltransferase
           Eco47II
 gi|558571|emb|CAA57629.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Escherichia coli]
 gi|1098127|prf||2115269B methyltransferase Eco47IIM
          Length = 417

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           TV+E+ AG G +   L   G + V++ E D      L+    +      +++ D  +VDF
Sbjct: 82  TVLELFAGAGGMALGLEKAGLKSVLLNEIDSHACKTLRKNRPEW----NVVEGDVSQVDF 137

Query: 110 EKFFN 114
             + N
Sbjct: 138 TPYRN 142


>gi|77409138|ref|ZP_00785852.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           COH1]
 gi|77172266|gb|EAO75421.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           COH1]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKDIYAYDLDDVAVRVAQENIDMNPGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|124268959|ref|YP_001022963.1| hypothetical protein Mpe_A3775 [Methylibium petroleiphilum PM1]
 gi|124261734|gb|ABM96728.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 184

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 11/126 (8%)

Query: 37  KKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQH 93
           +++A++  S  G    +IE+GAG G +T  L        ++ +E        L+      
Sbjct: 25  RRLAQAMASQIGDAGALIELGAGTGAVTSALRHAAPGTPLLAVELQSDLASGLRRRFPD- 83

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL----LFNWISADTWPPFWES 149
              +E+    A +V           + + +    ++   +    L   +      P    
Sbjct: 84  ---IEVACAPAHEVLARHAHAPVDTMLVSSLPFRSLPEPMRRTTLAALLQFIEAHPTRRM 140

Query: 150 LTLLFQ 155
           +   +Q
Sbjct: 141 VQYTYQ 146


>gi|22538105|ref|NP_688956.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           2603V/R]
 gi|25011994|ref|NP_736389.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           NEM316]
 gi|76799726|ref|ZP_00781820.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           18RS21]
 gi|77412885|ref|ZP_00789089.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           515]
 gi|38605304|sp|Q8DX85|PRMA_STRA5 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|38605307|sp|Q8E307|PRMA_STRA3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|22535011|gb|AAN00829.1|AE014280_21 ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           2603V/R]
 gi|24413537|emb|CAD47615.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76584923|gb|EAO61587.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           18RS21]
 gi|77161025|gb|EAO72132.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           515]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKDIYAYDLDDVAVRVAQENIDMNPGTENIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|330964963|gb|EGH65223.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 422

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 29  FLLDLNILK--------KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           FL D + L+        +I +         ++EIG G G++          +V      +
Sbjct: 166 FLSDDDTLEQAQLNKLERICQKLALKPTDHLLEIGTGWGSMAIYAAQQYGCRVTTTTLSR 225

Query: 81  QFFPILKDISSQ--HPNRLEIIQDD 103
           + F   +    +    +R+ ++  D
Sbjct: 226 EQFAYTEQRLIELGLQDRVTLLLTD 250


>gi|325000476|ref|ZP_08121588.1| methyltransferase [Pseudonocardia sp. P1]
          Length = 201

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA--- 104
           G  V+++ AG G L    L+ GA   + +E D++   +L+           ++   A   
Sbjct: 44  GAAVLDVCAGSGALGLEALSRGAADAVFVEADKRAAGVLRRNVGSVGLGGRVVAGRAGTV 103

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
           L     + F++     ++ + PY +G   +  W++A  
Sbjct: 104 LAGPAPRTFDV-----VLVDPPYAVGDAEIAGWLTAAA 136


>gi|320164940|gb|EFW41839.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 220

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  I + +     ++V++IG G G     L  +G + ++ I+  +    + + +++ 
Sbjct: 5   ESVVDWIQDDARLPKHLSVVDIGCGNGVSLVELARVGFKSLLGIDYSEPAIELARKVAAA 64

Query: 93  HP-----NRLEIIQDD--ALKVDFEKF 112
                     + I DD  AL+ D  +F
Sbjct: 65  DELDIDYQVFDFINDDVSALQNDKNRF 91


>gi|303243760|ref|ZP_07330101.1| tRNA (adenine-N(1)-)-methyltransferase [Methanothermococcus
           okinawensis IH1]
 gi|302486002|gb|EFL48925.1| tRNA (adenine-N(1)-)-methyltransferase [Methanothermococcus
           okinawensis IH1]
          Length = 294

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNR 96
           I    G  DG TV+E G G G LT  L     +  KVI  EK  +F  I +         
Sbjct: 80  ILTYCGIEDGETVVEAGTGSGALTIYLANAVGKNGKVITYEKRPEFAKIARK-------N 132

Query: 97  LEIIQD 102
           LEI+  
Sbjct: 133 LEIVGA 138


>gi|260177244|gb|ACX33964.1| putative SAM-dependent methyltransferase type 11 [uncultured
          bacterium RM35]
          Length = 181

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP 94
          +++  + G + G  V ++GAG G LT  L        +V+  + D      L+  + + P
Sbjct: 27 ERLVAALGLVRGQRVADVGAGRGYLTFRLADAVGPEGRVVATDIDDAVLDQLRAHTPKRP 86

Query: 95 NRL 97
          N +
Sbjct: 87 NVV 89


>gi|281210326|gb|EFA84493.1| Sterol 24-C-methyltransferase [Polysphondylium pallidum PN500]
          Length = 462

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 19/165 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
           A+S+       V+++G G G  T  +      ++  +  +++   I  + + +     R 
Sbjct: 231 ADSARITKDSFVLDVGCGVGGPTLEIAKYTGCRIRGLNINKKQVGIATERAKKLGLSERA 290

Query: 98  EIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
                DA+K+ +    F++ +      ++P     +           P    S +   Q 
Sbjct: 291 GFDHGDAMKMPYADNTFDVVTFFESTCHMPDK---QAFIKECYRVLKPGGRLSGSEWLQC 347

Query: 157 E---------VGERITAQKNSPHYGRLSVLTGWRTKATMM-FDIS 191
           E           E I A  + PH G L     +R+      F + 
Sbjct: 348 EKPTEKDIIQFIEPICAHHSVPHMGSL---CSYRSMMEKAGFYVH 389


>gi|222111381|ref|YP_002553645.1| type 11 methyltransferase [Acidovorax ebreus TPSY]
 gi|330825940|ref|YP_004389243.1| type 11 methyltransferase [Alicycliphilus denitrificans K601]
 gi|221730825|gb|ACM33645.1| Methyltransferase type 11 [Acidovorax ebreus TPSY]
 gi|329311312|gb|AEB85727.1| Methyltransferase type 11 [Alicycliphilus denitrificans K601]
          Length = 190

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 27/144 (18%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
              G      VIE G+G G+ T         +V  ++ + +    ++  +          
Sbjct: 26  RLLGPRVDGNVIEFGSGYGSFTVPAARRTTGQVTALDIEPEMVDCVRQKALAG------- 78

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
             D +K     F    + +   +         ++FN +  +                   
Sbjct: 79  HLDNIKAQVRDFVADGAEVATGSQ-----AHAMIFNLLHLEQPVELLRE----------- 122

Query: 161 RITAQKNSPHYGRLSVLTGWRTKA 184
              A++     G LSV   WR+  
Sbjct: 123 ---ARRTMKEGGVLSV-IHWRSDI 142


>gi|161522856|ref|YP_001585785.1| cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           multivorans ATCC 17616]
 gi|189348308|ref|YP_001941504.1| cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           multivorans ATCC 17616]
 gi|160346409|gb|ABX19493.1| Cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           multivorans ATCC 17616]
 gi|189338446|dbj|BAG47514.1| cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           multivorans ATCC 17616]
          Length = 405

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 30  LLDLNILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           L D    K  +I ++ G   G+ V+EIG G G         G  
Sbjct: 170 LADAQTAKYQRIVDALGLRAGMRVLEIGCGWGGFAVHAARQGIH 213


>gi|52141952|ref|YP_084876.1| methyltransferase [Bacillus cereus E33L]
 gi|51975421|gb|AAU16971.1| methyltransferase [Bacillus cereus E33L]
          Length = 239

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G  V+EIG G G     +      KV  +EK++      KD  S     +++I+ + 
Sbjct: 38  GTNVLEIGCGTGKTAAYMTKECGYKVTAVEKNEIMIQKAKDRWSFEGLDIQLIEGNV 94


>gi|78224576|ref|YP_386323.1| 50S ribosomal protein L11P methyltransferase [Geobacter
           metallireducens GS-15]
 gi|123570746|sp|Q39Q76|PRMA_GEOMG RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|78195831|gb|ABB33598.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Geobacter
           metallireducens GS-15]
          Length = 299

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--------------SSQHPNR 96
           V+++G G G L    + LGA++V+  + D     + ++                +  P +
Sbjct: 168 VLDVGTGSGILAMAAVKLGAQRVVGTDIDPDAVAVARENCAMNGVTAELVTTPLADIPGQ 227

Query: 97  LEIIQDDALKVD 108
             ++  + L  D
Sbjct: 228 FSVVLANILAED 239


>gi|15805670|ref|NP_294366.1| N-6 adenine-specific DNA restriction methylase [Deinococcus
           radiodurans R1]
 gi|6458345|gb|AAF10222.1|AE001922_2 N-6 adenine-specific DNA restriction methylase, putative
           [Deinococcus radiodurans R1]
          Length = 186

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           G G +     + G R V +IEKD +    L+  +        + + DAL     +     
Sbjct: 57  GSGAIGLEAASRGYR-VTLIEKDSRAVGALERNARGLGLNARVFKGDAL----GQLPRAG 111

Query: 117 SPIRIIANLPYNIGTRLLFN-WISADTWPPFWESLTLLFQKEVGERITAQKN 167
               I ++ PY      +    +S+    P      ++ Q      +     
Sbjct: 112 QADIIFSDPPYQADIPAVARAVLSSGAVRP---GGVVICQHPTQVTLPEHPG 160


>gi|330961711|gb|EGH61971.1| group 2 family glycosyl transferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 1621

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             L G +V+EIGAG G +++ L   GA  V+ +E   +   I    +    + + ++ + 
Sbjct: 81  HLLKGKSVLEIGAGCGAISRYLGEAGA-MVLSLEGSPRRAAIAASRTRDL-DTITVLAER 138

Query: 104 ALKVDFEKFFNI 115
              +  E+ F++
Sbjct: 139 FDDLKVEQQFDV 150


>gi|307701808|ref|ZP_07638822.1| Eco57I restriction endonuclease [Mobiluncus mulieris FB024-16]
 gi|307613066|gb|EFN92321.1| Eco57I restriction endonuclease [Mobiluncus mulieris FB024-16]
          Length = 498

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 19/122 (15%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGAR-------KVI 74
            +GQ F   +   + IA  +      T  V++ GAG G LT  L+    +       +V+
Sbjct: 28  KLGQYF-TPVTTAQLIARMAELHQSGTIRVLDPGAGSGILTAALVNRILKETTSLKVEVL 86

Query: 75  VIEKDQQFFPILKDISSQHPN------RLEIIQDDAL---KVDFEKFFNISSPIRIIANL 125
            IE D Q    L+   +   N      +   +  D +                  +I N 
Sbjct: 87  AIETDTQLIRHLETTLNACINAGHGRVKASWVNADFILDSTGLNHSLNLEKKFDLVIENP 146

Query: 126 PY 127
           PY
Sbjct: 147 PY 148


>gi|262283738|ref|ZP_06061502.1| adenine-specific DNA methylase [Streptococcus sp. 2_1_36FAA]
 gi|262260584|gb|EEY79286.1| adenine-specific DNA methylase [Streptococcus sp. 2_1_36FAA]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNR 96
           I +       IT++E+G+G GNL + +L    +++  + +E D     +   I+    ++
Sbjct: 101 IIDQLMVASDITLLEMGSGTGNLAETILNNSRKEIDYLGLEIDDLLIDLSASIAEVMGSK 160

Query: 97  LEIIQDDALK 106
               Q DA++
Sbjct: 161 AHFAQGDAVR 170


>gi|259415641|ref|ZP_05739562.1| methyltransferase FkbM [Silicibacter sp. TrichCH4B]
 gi|259348871|gb|EEW60633.1| methyltransferase FkbM [Silicibacter sp. TrichCH4B]
          Length = 244

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 15/76 (19%)

Query: 29  FLLDLNILKKIAESSG------------SLDGITVIEIGAGPGNLTQMLLT-LGARKVIV 75
           FL +  I  +I  ++               +   V+E+GAG G +  ++ T     KV+ 
Sbjct: 33  FLTETRI-DRI-NAARYEGQEIAGALHVIREDDRVLEVGAGLGVVGAVIATNAKPEKVLS 90

Query: 76  IEKDQQFFPILKDISS 91
            E + +  P+++ +  
Sbjct: 91  FEANPELVPVIRALHQ 106


>gi|154150538|ref|YP_001404156.1| methyltransferase type 11 [Candidatus Methanoregula boonei 6A8]
 gi|153999090|gb|ABS55513.1| Methyltransferase type 11 [Methanoregula boonei 6A8]
          Length = 210

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           ++ + I E++       V++ G G G L+  LL  G R V  ++  +    +L    + 
Sbjct: 26 QDVARAIRETTKPGPETEVLDFGCGTGLLSLALLP-GVRSVTAVDSSRGMLDVLDKKIAA 84


>gi|126660063|ref|ZP_01731184.1| modification methylase NspV [Cyanothece sp. CCY0110]
 gi|126618660|gb|EAZ89408.1| modification methylase NspV [Cyanothece sp. CCY0110]
          Length = 489

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 49  ITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            ++IE   G GN  +        ++++I IE ++ +   L +   Q  N++ +I D+   
Sbjct: 36  DSIIEPTCGIGNFLKSSSYFFKDSKEIIGIEINKTYVAQLNNNFEQRLNKIRVINDNFFN 95

Query: 107 VDFEKFF-NISSPIRIIANLPYNIGTRL 133
           ++  K   N +S I I+ N P+   ++L
Sbjct: 96  INLSKIISNKNSNILILGNFPWVTNSQL 123


>gi|134046087|ref|YP_001097573.1| methyltransferase small [Methanococcus maripaludis C5]
 gi|132663712|gb|ABO35358.1| 16S rRNA m(2)G 1207 methyltransferase [Methanococcus maripaludis
           C5]
          Length = 200

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 19/125 (15%)

Query: 19  IIPKKYMGQNFLLDLNILKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
             PKK       +D   +  I  E    L    V+++G G G +   +       V + +
Sbjct: 35  FSPKK-------IDKGTI--ILVEELELLKSDNVLDVGCGYGVIGISIADE-VNSVTMTD 84

Query: 78  KDQQFFPILK---DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            + +   + +    ++ +    +E+ Q D  +    K +++     II+N P   G  L+
Sbjct: 85  VNNRSVSLTRKNVKLNGKSEKNIEVFQGDLYEKVKNKKYSV-----IISNPPIKAGKELI 139

Query: 135 FNWIS 139
              IS
Sbjct: 140 HKIIS 144


>gi|313680172|ref|YP_004057911.1| 16S rRNA m(2)g 1207 methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313152887|gb|ADR36738.1| 16S rRNA m(2)G 1207 methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 371

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +G  V+++GAG G L+  L   GA +V ++E         +           +   D   
Sbjct: 230 EGARVLDLGAGYGALSLPLACEGA-QVTLLEHQLASVESARRSFRAAGRSAAVHHSDV-- 286

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
              E          +++N P+++G R++ +   A
Sbjct: 287 --DEALQENEVYDIVVSNPPFHVGGRVVLDVAEA 318


>gi|302037420|ref|YP_003797742.1| precorrin-6Y C(5,15)-methyltransferase [Candidatus Nitrospira
           defluvii]
 gi|300605484|emb|CBK41817.1| Precorrin-6Y C(5,15)-methyltransferase (decarboxylating)
           [Candidatus Nitrospira defluvii]
          Length = 418

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 20/110 (18%)

Query: 20  IPKKYMGQNFLLDLNILKKIAE-----SSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KV 73
           +PKK +         I K+        +        + +IGAG G++      L    +V
Sbjct: 233 MPKKGL---------ITKREVRLLSLAALQIRPDSVLWDIGAGSGSVAIEAACLAPEGRV 283

Query: 74  IVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRII 122
             IE D +   I +D    H  + ++++   A     E    + +P  + 
Sbjct: 284 YAIEVDPEGVEICRDNVRAHAVDNVQVVAGKA----PEALAGLETPDAVF 329


>gi|297792127|ref|XP_002863948.1| arginine N-methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309783|gb|EFH40207.1| arginine N-methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
           G  V+++GAG G L+      GA+ V  +E   +     + + + +P    R+ +I+ 
Sbjct: 185 GRVVVDVGAGSGILSLFAALAGAKHVYAVEA-SEMAEYARKLIAGNPLLAERITVIKG 241


>gi|293609493|ref|ZP_06691795.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827945|gb|EFF86308.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 348

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP----ILKDISSQHPNRLE 98
           +   +G  ++E+G G G+LT  +     R  I              IL+    +    +E
Sbjct: 117 AQLKNGQHILELGCGWGSLTLWMAENYPRSQITAV--SNSATQKKHILRQAELRGLTNVE 174

Query: 99  IIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD--TWPPFWESLTLLF 154
           ++  D   L +D EKF  + S         Y      +  W+ AD   W   +    L +
Sbjct: 175 VLTCDVNVLDLDQEKFDRVVSVEMFEHVRNYQRLFEKIQGWLKADGLLWCHIFCHRFLHY 234

Query: 155 QKEV 158
             EV
Sbjct: 235 PFEV 238


>gi|292490969|ref|YP_003526408.1| protein-L-isoaspartate O-methyltransferase [Nitrosococcus
           halophilus Nc4]
 gi|291579564|gb|ADE14021.1| protein-L-isoaspartate O-methyltransferase [Nitrosococcus
           halophilus Nc4]
          Length = 236

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  +   +       V+E+G G G    +L  L A++V  IE   +      +   +
Sbjct: 90  PYIVALMTHLAEPDPEAVVLEVGTGSGYQGAVLAHL-AKQVYTIEIIPELGRQAAERLRR 148

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
              + +E+   D      E   +      ++   P  I  +L+   
Sbjct: 149 LGFDNIEVRIGDGYYGWEE---HAPFDAIVVTAAPEQIPPKLIEQL 191


>gi|292654740|ref|YP_003534637.1| methyltransferase [Haloferax volcanii DS2]
 gi|291371192|gb|ADE03419.1| methyltransferase [Haloferax volcanii DS2]
          Length = 266

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            ++++G G G  T++L      +V+ ++ D     +    +S   + +E +  DA ++ F
Sbjct: 34  RILDVGCGTGEFTRVLAEASEARVVGVDADTDLLSV----ASDRDSDIETVAGDATRLPF 89

Query: 110 EK 111
             
Sbjct: 90  AA 91


>gi|254777405|ref|ZP_05218921.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 253

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 46/158 (29%), Gaps = 23/158 (14%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDD 103
                V+EIG G G  T  +        VI +E  ++    +L  I   +   + +I+ +
Sbjct: 78  RKAPVVLEIGCGNGTSTLAMAKQEPGVDVIAVEVYRRGLAQLLCAIDRDNVTNIRLIRGN 137

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           AL V       + +P  +                   D WP          Q      I 
Sbjct: 138 ALDV----LQRLIAPASLTG-----------VRVFFPDPWPKARHHKRRFLQPGTVGLIA 182

Query: 164 AQ--KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
            +        G L V T     A  + D+        P
Sbjct: 183 DRLLPG----GVLHVATDHAGYAEHIADVGAGEPRLRP 216


>gi|240168719|ref|ZP_04747378.1| methyltransferase (methylase) [Mycobacterium kansasii ATCC 12478]
          Length = 213

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 34/118 (28%), Gaps = 13/118 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQ 92
            + ++   +G      + E G G G L   LL      +  +  D       +     + 
Sbjct: 25  TINRLVAHAGLAGNQRIFEFGCGTGRLAAHLLGSLPPTIDYLGVDVSPVMIKLATRRVAA 84

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
              R +++             + S P+         + +  +F+ +         + L
Sbjct: 85  WATRAKVV-----------LVDGSLPLPADDGFADRVLSTFVFDLLDEAYARTVLDDL 131


>gi|212225087|ref|YP_002308323.1| Hypothetical DNA methylase [Thermococcus onnurineus NA1]
 gi|212010044|gb|ACJ17426.1| Hypothetical DNA methylase [Thermococcus onnurineus NA1]
          Length = 203

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRL 97
           A S G + G  + ++GAG G L+     +GA +V  +E D++   + ++        + +
Sbjct: 40  AHSLGDIGGKVIADLGAGTGVLSAGACLMGAERVYAVEIDEEALRVARENIESLGIEDCV 99

Query: 98  EIIQDDALKV 107
           E +  D L  
Sbjct: 100 EFVNSDVLDF 109


>gi|149924336|ref|ZP_01912705.1| hypothetical protein PPSIR1_29770 [Plesiocystis pacifica SIR-1]
 gi|149814819|gb|EDM74388.1| hypothetical protein PPSIR1_29770 [Plesiocystis pacifica SIR-1]
          Length = 215

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLE 98
           ++ G L+G  V++IG G G         GA  VI I+   +     +  + +     R +
Sbjct: 49  QTVGDLEGKKVLDIGTGTGRFAVECAKRGAD-VIGIDFAPKMIEFSRQAARRFGVEERCK 107

Query: 99  IIQDDALKVDFEKFFNI 115
            +  D L+ DF++ F++
Sbjct: 108 FVVGDVLEHDFDEQFDV 124


>gi|146343041|ref|YP_001208089.1| putative protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Bradyrhizobium sp. ORS278]
 gi|146195847|emb|CAL79874.1| putative Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Bradyrhizobium sp. ORS278]
          Length = 291

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP 94
           + G     TV+ +G G G  T +L  L     +V   E D+      ++     P
Sbjct: 93  ACGIKPADTVVHVGVGSGYYTAILAHLVGPHGRVHAYEIDEAMAARARENLEHVP 147


>gi|119898910|ref|YP_934123.1| putative methyltransferase [Azoarcus sp. BH72]
 gi|119671323|emb|CAL95236.1| putative methyltransferase [Azoarcus sp. BH72]
          Length = 285

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQ 92
           I   + ++        V+++G G G  T  +    A        D         +  ++Q
Sbjct: 38  IADLLLDTLADTPDAAVLDVGCGAGATTVDIARRVAPHGRCTGIDVSAPMITAARARAAQ 97

Query: 93  HPNRLEIIQDDALKVDF 109
           H    + +  DA   DF
Sbjct: 98  HGASADFVCADAQAHDF 114


>gi|119717392|ref|YP_924357.1| hypothetical protein Noca_3168 [Nocardioides sp. JS614]
 gi|119538053|gb|ABL82670.1| hypothetical protein Noca_3168 [Nocardioides sp. JS614]
          Length = 171

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH- 93
           ++   +         V+EIG GPG   +++       K+  I++ +      K   ++  
Sbjct: 10  IRWAVDIMDVQPSDHVLEIGCGPGAGAELICERLETGKLFAIDRSESGVDRTKRRCARFI 69

Query: 94  -PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
              RL + Q D L         ++       NL +          +     P
Sbjct: 70  ESGRLTVRQID-LATLRVPVKRLNKVFAFNVNLFWVRSCVDEVALLHDRVVP 120


>gi|94970892|ref|YP_592940.1| formamidopyrimidine-DNA glycosylase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552942|gb|ABF42866.1| Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic
           site) lyase [Candidatus Koribacter versatilis Ellin345]
          Length = 272

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 210 PHLNPIPCCLESLKKITQEAFGKRRKTLRQSL---------KRLGGENLLHQAGIETNLR 260
           P L P+   LE  +K+    F  R   ++ +L           +  +  L +AGI    R
Sbjct: 134 PGLEPLTVSLEDFQKL----FRGRNTPIKSALLNQALLSGVGNIYADEALFRAGIRPRRR 189

Query: 261 AENLSIEDFCRITNILTD 278
           A++LS  D  R+   + +
Sbjct: 190 AKSLSRADLTRLHEKVGE 207


>gi|71282574|ref|YP_267298.1| ribosomal protein L11 methyltransferase [Colwellia psychrerythraea
           34H]
 gi|123633940|sp|Q489G6|PRMA_COLP3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|71148314|gb|AAZ28787.1| ribosomal protein L11 methyltransferase [Colwellia psychrerythraea
           34H]
          Length = 293

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQH-PNRLEIIQD 102
            L   TV++ G G G L+   L LGA+KVI I+ D Q     L +    +  +RLE+   
Sbjct: 157 DLQDKTVVDFGCGSGILSLAALKLGAKKVIGIDIDPQALQASLANAERNNVSDRLELY-- 214

Query: 103 DALKVDFEKF 112
             L  D  +F
Sbjct: 215 --LPKDQPEF 222


>gi|76800832|ref|YP_325840.1| methyltransferase [Natronomonas pharaonis DSM 2160]
 gi|76556697|emb|CAI48269.1| probable methyltransferase [Natronomonas pharaonis DSM 2160]
          Length = 250

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRL 97
              +G   G   ++ G G G L   L  LG  +V   E+D +F  + ++    +   + +
Sbjct: 82  VGHTGVAAGDRALDAGTGTGVLAAYLGRLGV-EVTTYERDPEFAEVARENMETAGVADNV 140

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIA 123
            +   D          ++  P  +I 
Sbjct: 141 TVETGDI----AATIDDLKGPFDLIT 162


>gi|37524718|ref|NP_928062.1| protein-L-isoaspartate O-methyltransferase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|55583914|sp|Q7N8K3|PIMT_PHOLL RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|36784143|emb|CAE13012.1| Protein-L-isoaspartate O-methyltransferase (Protein-beta-aspartate
           methyltransferase) (PIMT) (Protein L-isoaspartyl
           methyltransferase) (L-isoaspartyl protein carboxyl
           methyltransferase) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 208

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E         ++EIG G G  T +L  L  + V  +E+ +      K    Q
Sbjct: 61  PYIVARMTELLQLTPDAKILEIGTGSGYQTAILAHL-VKHVFSVERIKGLQWQAKRRLKQ 119

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              + +     D           +   I + A  PY
Sbjct: 120 LDLHNVSTRHGDG--WQGWPSRGLFDAIIVTAAPPY 153


>gi|254246112|ref|ZP_04939433.1| Protein-L-isoaspartate carboxylmethyltransferase [Burkholderia
           cenocepacia PC184]
 gi|124870888|gb|EAY62604.1| Protein-L-isoaspartate carboxylmethyltransferase [Burkholderia
           cenocepacia PC184]
          Length = 218

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISS 91
             +  ++ +         V+ IGAG G L   L    A+ V  +E D       +D + +
Sbjct: 64  PRVEARVLQELAVKKHENVLVIGAGSGYL-AALFAHRAQHVTAVEIDPTIAKFAEDNLRN 122

Query: 92  QHPNRLEIIQDD 103
                 E++  D
Sbjct: 123 DGVTNAEVVLGD 134


>gi|307596017|ref|YP_003902334.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Vulcanisaeta
           distributa DSM 14429]
 gi|307551218|gb|ADN51283.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Vulcanisaeta distributa DSM 14429]
          Length = 219

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNR 96
                  +   V++IG+G G++T +  L      V  I+ D+    + +  + +    +R
Sbjct: 36  ISKLRLREDSRVLDIGSGTGSVTVEAALMARRGLVYAIDSDENAVELTRRNAIRFGVSDR 95

Query: 97  LEIIQDDA 104
           + +I  +A
Sbjct: 96  VIVIHGEA 103


>gi|303232302|ref|ZP_07319000.1| RNA methyltransferase, RsmD family [Atopobium vaginae PB189-T1-4]
 gi|302481625|gb|EFL44687.1| RNA methyltransferase, RsmD family [Atopobium vaginae PB189-T1-4]
          Length = 198

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL---KDISSQHPNRLEIIQDDALKV 107
           V++  AG G L   LL+ GA  +  +EK++  F  L              ++I  D    
Sbjct: 50  VLDAFAGSGALGFELLSRGAAHLTAVEKNRTSFACLLANARNLHATSQEAQLICGDIFAP 109

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                F   + + ++   PY +    +   ++ 
Sbjct: 110 ALYTRFAQPANLIVLD-PPYAMSAAEISKLLAQ 141


>gi|296453962|ref|YP_003661105.1| methyltransferase type 11 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183393|gb|ADH00275.1| Methyltransferase type 11 [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 195

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + +++  ++       V+E   G G  T+ +L    +    +++D Q   I+  ++S+
Sbjct: 55  KKLTERMLANADIAGKD-VVEFAPGLGLTTRAILERDPKSYRGVDRDPQVVDIISKLTSE 113


>gi|229133701|ref|ZP_04262527.1| hypothetical protein bcere0014_26190 [Bacillus cereus BDRD-ST196]
 gi|228649736|gb|EEL05745.1| hypothetical protein bcere0014_26190 [Bacillus cereus BDRD-ST196]
          Length = 129

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
              T++E+GAG G   + +  L  +   V     +  P L   + +H  N ++I   D  
Sbjct: 41  PFQTMLELGAGNGRFARAMSRLQVKMTTV-----ELVPELVMFAKEHSTNNIDIHCADFY 95

Query: 106 KVDFEKFFNI 115
           K++FE+ F++
Sbjct: 96  KINFEEKFDV 105


>gi|300776049|ref|ZP_07085908.1| type 11 methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300505182|gb|EFK36321.1| type 11 methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 209

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             SSG     ++I+IG G  NL   LL  G   + V++   +     ++      N+++ 
Sbjct: 36  ITSSGLGKDASIIDIGGGDSNLVDFLLEEGYENITVLDISAKALQKAQERLGDAANKVKW 95

Query: 100 IQDDALKVDFEKFFNI 115
           I  D    +  + ++I
Sbjct: 96  IATDITAFEPTEKYDI 111


>gi|218132835|ref|ZP_03461639.1| hypothetical protein BACPEC_00696 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991708|gb|EEC57712.1| hypothetical protein BACPEC_00696 [Bacteroides pectinophilus ATCC
           43243]
          Length = 318

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQD 102
             G  V+++G G G L+ + + LGA   +  + D       K+ +  +     R+E+I+ 
Sbjct: 171 KKGDKVLDVGCGSGILSVVAIMLGAESALGTDLDPNAIIATKENAEVNKIENGRIEVIEG 230

Query: 103 DALKVDFEKFFNISSPIRIIA-NLPYNIGTRLLFNWISADTWPPFW--ESLTLLFQKEVG 159
           + +     +         I+  N+  ++   L             +    +  + ++EV 
Sbjct: 231 NIIDDKAVQDKAGYECYDIVCANILADVLEPLSEEITRHMKHGAIFMTSGIIDMKEEEVV 290

Query: 160 ERITAQK 166
            +     
Sbjct: 291 NKFRENP 297


>gi|195940841|ref|ZP_03086223.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4024]
          Length = 208

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPDSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I   LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPAALLSQL 162


>gi|118590900|ref|ZP_01548300.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614]
 gi|118436422|gb|EAV43063.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614]
          Length = 346

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +LK++ E      G  +++   G G  ++ +L LGAR V+ I++D       +++   
Sbjct: 21  PVLLKEVLEWLAPQPGDVIVDGTFGAGGYSRAILELGAR-VVGIDRDPDAIAGGQELVKA 79

Query: 93  HPNRLEIIQDDA 104
              RL ++    
Sbjct: 80  SEGRLMLVPGQF 91


>gi|268566763|ref|XP_002639807.1| Hypothetical protein CBG02258 [Caenorhabditis briggsae]
          Length = 426

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 30/177 (16%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKI--AESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            +L   KI  KK   Q+  +D  I++ I   +   +    ++I+IGAG G+L++M+    
Sbjct: 79  RLLRK-KIKAKK---QH-EID-RIIELISQVQLFANGIVDSLIDIGAGVGHLSRMVSIHN 132

Query: 70  ARKVIVIE-----------KDQQFFPI-----LKDISSQHPNRLE--IIQDDALKVDFEK 111
              V+ +E            D++               + P R    + ++ ALKVD   
Sbjct: 133 KLAVMAVEGNHQFTISANDLDEKLAKASAVSQTALSFHERPIRYTDFVTEEMALKVDD-- 190

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
            F  +S I +  +   +  + +L  ++ +     F   L   + KE       +   
Sbjct: 191 -FTSNSAILVGLHCCGDFSSTVLKVFLDSQKAR-FLVLLGCCYHKEFQCFNFCKPGD 245


>gi|328952619|ref|YP_004369953.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
 gi|328452943|gb|AEB08772.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
          Length = 1174

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 20/129 (15%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN-----------LTQMLLTLGA 70
           +  +GQ F    N+   IA         TV++   G G            L +   T   
Sbjct: 338 RHGLGQYF-TSENLCDFIAAFCIRSPHDTVLDPSCGTGTFLIRAYDRLRWLGRHDHTKLL 396

Query: 71  RKVIVIEKDQQFFPIL------KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            ++  ++    F   L      +   S+H N   II  D  ++   + F    P   + N
Sbjct: 397 SQIWGVDIGP-FPAELATINLFRQRISEHGNFPRIICQDFFRITPGECFPFPPPKMDLDN 455

Query: 125 LPYNIGTRL 133
            P  I    
Sbjct: 456 -PQTIEEPF 463


>gi|322392664|ref|ZP_08066124.1| ribosomal protein L11 methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321144656|gb|EFX40057.1| ribosomal protein L11 methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAPG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|322388770|ref|ZP_08062367.1| ribosomal protein L11 methyltransferase [Streptococcus infantis
           ATCC 700779]
 gi|321140389|gb|EFX35897.1| ribosomal protein L11 methyltransferase [Streptococcus infantis
           ATCC 700779]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAPG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|319945703|ref|ZP_08019954.1| ribosomal protein L11 methyltransferase [Streptococcus australis
           ATCC 700641]
 gi|319748063|gb|EFW00306.1| ribosomal protein L11 methyltransferase [Streptococcus australis
           ATCC 700641]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAPG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|317471861|ref|ZP_07931196.1| methyltransferase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316900634|gb|EFV22613.1| methyltransferase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 263

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL  +  + K            V+EIGAG G  +  L   G   V  +E  +    + + 
Sbjct: 29  FLTTMRYIDK-----YIKPDDRVLEIGAGTGRYSHALAHQG-YAVDAVELVEHNIEMFRK 82

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
                   + + Q +AL  D   F +    I ++    Y++ T+
Sbjct: 83  NIQP-DETITVTQGNAL--DLSDFSDSQYDITLLLGPLYHLYTK 123


>gi|312623426|ref|YP_004025039.1| O-methyltransferase-like protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203893|gb|ADQ47220.1| O-methyltransferase-like protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 240

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL----TLGARKVIVIEKDQQFF--PILKDISSQHP 94
           +         V+E   G GNL   +L        +K+  +E  ++     +L    +   
Sbjct: 32  DFIQIKKNDVVVEF--GTGNLIIPILLWAKGKKFKKLYALEIQKEVCDLAVLNRNINNLQ 89

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +R+E+I  D LK D  K F       +  N PY
Sbjct: 90  DRIEVINAD-LK-DALKIFGSEFANVVFTNPPY 120


>gi|312867974|ref|ZP_07728178.1| ribosomal protein L11 methyltransferase [Streptococcus
           parasanguinis F0405]
 gi|311096378|gb|EFQ54618.1| ribosomal protein L11 methyltransferase [Streptococcus
           parasanguinis F0405]
          Length = 317

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAPG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|299144168|ref|ZP_07037248.1| ribosomal protein L11 methyltransferase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518653|gb|EFI42392.1| ribosomal protein L11 methyltransferase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 314

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDI-SSQHPNRLEIIQD 102
                 V +IG G G L    + LGA KVI ++ DQ+     L++   +    ++++ + 
Sbjct: 172 VKQDNIVFDIGCGSGILGIAAIKLGAEKVIAVDIDQKCIEASLENANMNNVSEKIKVYKG 231

Query: 103 DALKV 107
           + L V
Sbjct: 232 NLLDV 236


>gi|298531186|ref|ZP_07018587.1| Methyltransferase type 11 [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509209|gb|EFI33114.1| Methyltransferase type 11 [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 200

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G ++++IG G G   + +L L  +       D    P L +++ QH   L +I+ D 
Sbjct: 34  LQPGASILDIGCGTG---RDMLWLHNKGFYCTGLD--CAPALAELARQHTG-LPVIEADF 87

Query: 105 LKVDFEKF 112
              DF   
Sbjct: 88  ESFDFSGL 95


>gi|296877183|ref|ZP_06901223.1| ribosomal protein L11 methyltransferase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431703|gb|EFH17510.1| ribosomal protein L11 methyltransferase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVAPG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|284161159|ref|YP_003399782.1| protein-L-isoaspartate O-methyltransferase [Archaeoglobus profundus
           DSM 5631]
 gi|284011156|gb|ADB57109.1| protein-L-isoaspartate O-methyltransferase [Archaeoglobus profundus
           DSM 5631]
          Length = 218

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDIS 90
            +++  + +     +G  V+E+G G G    ++  +  +  KVI IE+  +     K++ 
Sbjct: 63  PHMVAIMCDLLDLKEGEKVLEVGGGSGYHAAVVAEIVGKKGKVIAIERIPELAERAKEVL 122

Query: 91  SQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                + ++I+  D  K   E+       I + A+ P +I   L+   
Sbjct: 123 RLLGYDNVKIVVGDGTKGYPEEA--PYDKIYVTASAP-DIPKPLIEQL 167


>gi|94500022|ref|ZP_01306557.1| modification methylase, HemK family protein [Oceanobacter sp.
           RED65]
 gi|94427880|gb|EAT12855.1| modification methylase, HemK family protein [Oceanobacter sp.
           RED65]
          Length = 281

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91
            +++  I E         V+++G G G L         +  V+ ++  ++   + K+  +
Sbjct: 99  ESLMDYIVEHFNPK---NVLDLGTGTGALALATAKEYPQASVVAVDVIEEAVALAKE--N 153

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              N++  ++   L+ D+           I++N PY
Sbjct: 154 AKLNKVTNVE--ILQSDWFALVPKRRFDLIVSNPPY 187


>gi|33593168|ref|NP_880812.1| putative biotin synthesis protein [Bordetella pertussis Tohama I]
 gi|33563543|emb|CAE42440.1| putative biotin synthesis protein [Bordetella pertussis Tohama I]
 gi|332382579|gb|AEE67426.1| putative biotin synthesis protein [Bordetella pertussis CS]
          Length = 478

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            + ++IA +        ++EIG G G LT+ L     R    I
Sbjct: 32 EQLAERIA-ALPLPAEPRILEIGCGTGLLTRALARRLGRADWTI 74


>gi|127512413|ref|YP_001093610.1| cyclopropane-fatty-acyl-phospholipid synthase [Shewanella loihica
           PV-4]
 gi|126637708|gb|ABO23351.1| cyclopropane-fatty-acyl-phospholipid synthase [Shewanella loihica
           PV-4]
          Length = 426

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQF-FPILKDISSQH 93
           L+ I E      G  V+EIG G G L   +    G R +     D Q+ +   +   +  
Sbjct: 185 LQTICEKLELKPGEHVLEIGTGWGALAIYMAQHYGCRVITTTISDAQYQYAKTRIEQAGL 244

Query: 94  PNRLEIIQDD 103
            +++ +++ D
Sbjct: 245 SDQITLLKQD 254


>gi|310764826|gb|ADP09776.1| Putative enzyme [Erwinia sp. Ejp617]
          Length = 245

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKD--ISSQHPNRLE 98
           +   +    ++IG+G G +  ML    A +V    +E D+      ++   +S  P+++ 
Sbjct: 40  APVANVQRALDIGSGSGLIALMLAQRTADRVHIDAVELDEAAALQAQENVAASPWPDKVR 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + Q D ++              I++N PY
Sbjct: 100 VRQADIVEWTQRC---EHRYSLIVSNPPY 125


>gi|304314720|ref|YP_003849867.1| hypothetical protein MTBMA_c09590 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588179|gb|ADL58554.1| conserved hypothetical protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 186

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDIS 90
           D+NI + +        G TV+E+G   GN T+++  L    +V+ ++   +   +++ +S
Sbjct: 7   DINIYRDVLREV-LRPGDTVVELGCHIGNSTRIISDLVQEGRVVAVDNSPEAVDVMEALS 65

Query: 91  SQHPNRLEIIQDDA 104
            +  N +E I  D 
Sbjct: 66  RERDN-VEFISGDV 78


>gi|284048009|ref|YP_003398348.1| Methyltransferase type 11 [Acidaminococcus fermentans DSM 20731]
 gi|283952230|gb|ADB47033.1| Methyltransferase type 11 [Acidaminococcus fermentans DSM 20731]
          Length = 244

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRL 97
           A     +    V+E+G G G ++ +L   GA KV+ ++ +     + +     +   +R+
Sbjct: 34  AAFPHLVRKAKVLELGCGTGAVSLLLANRGAEKVLGVDVNPHVVELFQRSIRDNHLEDRV 93

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           E    D L+ DF       +   + AN PY IG R
Sbjct: 94  EGRVCD-LR-DFRDGLPCDALDLVAANPPYRIGGR 126


>gi|256785265|ref|ZP_05523696.1| methyltransferase [Streptomyces lividans TK24]
 gi|289769156|ref|ZP_06528534.1| methyltransferase [Streptomyces lividans TK24]
 gi|289699355|gb|EFD66784.1| methyltransferase [Streptomyces lividans TK24]
          Length = 269

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 37/118 (31%), Gaps = 11/118 (9%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNR 96
            + E+        V+++  G G +T  LL          ++ D     I +   +   +R
Sbjct: 53  DMVEAL-VGPAPRVLDLACGTGTITARLLDRFPDATSTGVDLDPALLAIAEGTFAG-DDR 110

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +  +  D          +   P ++  +    + T    +W   +     +  +  L 
Sbjct: 111 VSFVAAD--------LKDPDWPAKLPYDAYDAVLTATALHWFHTEPLADLYGRVAELV 160


>gi|255077062|ref|XP_002502184.1| predicted protein [Micromonas sp. RCC299]
 gi|226517449|gb|ACO63442.1| predicted protein [Micromonas sp. RCC299]
          Length = 433

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLE 98
            +   L G  V++IG G G L  M    GA +V+ +E+          +        ++ 
Sbjct: 134 RAIKVLRGQRVVDIGGGSGLLAMMAARAGAEQVVTVERVGDMAECASRVLEANGFGGKVS 193

Query: 99  IIQDDALKVDFEKF 112
           ++   +L +     
Sbjct: 194 VVHGSSLNLKVPDL 207


>gi|221058559|ref|XP_002259925.1| phosphoethanolamine N-methyltransferase [Plasmodium knowlesi strain
           H]
 gi|193809998|emb|CAQ41192.1| phosphoethanolamine N-methyltransferase,putative [Plasmodium
           knowlesi strain H]
          Length = 264

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           KI           V++IG+G G   + +       V  ++  ++   I   + ++  +++
Sbjct: 43  KILSDIYLEPNSKVLDIGSGLGGGCKYINEKYDAHVYGVDICEKMIAI-AKLRNKDKSKV 101

Query: 98  EIIQDDALKVDFEK 111
           E    D LK DF +
Sbjct: 102 EFEAMDILKKDFPE 115


>gi|51245094|ref|YP_064978.1| hypothetical protein DP1242 [Desulfotalea psychrophila LSv54]
 gi|50876131|emb|CAG35971.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 207

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           NF  DL ++ ++ E      G  V+++G G G+L   L      +   IE+DQ      K
Sbjct: 8   NFRFDLQVIAEVVE-----PGSRVLDLGCGNGDLLAWLKENKDVQGTGIEQDQ------K 56

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            +++     L ++Q D L  + E + +      I++     +   
Sbjct: 57  KVTNCISRGLTVLQGD-LNEEVEDYPDNYFDYVILSQTLQQVFAP 100


>gi|18313187|ref|NP_559854.1| DNA topoisomerase VI subunit B [Pyrobaculum aerophilum str. IM2]
 gi|28380201|sp|Q8ZVM0|TOP6B_PYRAE RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|18160701|gb|AAL64036.1| DNA topoisomerase VI (type II ) subunit b [Pyrobaculum aerophilum
           str. IM2]
          Length = 527

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 57/168 (33%), Gaps = 27/168 (16%)

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            +  N  + ++ +         +  +   ++ +  G  + A+K    Y + + +      
Sbjct: 142 MIDTNSNSPIILDRREYPNRYKWHGTAVKVYLE--GNWLAAKKRIEDYLKRTAIIAPYA- 198

Query: 184 ATMMFD-------ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
             ++F        +        P     +       +P    +++LK++ QE+   R  T
Sbjct: 199 -EIVFKGPDLELWLKRRTTKLPPAPKEGL------PHPKSVDVDTLKQMIQES---RGLT 248

Query: 237 LRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L + L            +  L  AG   N +   L+ E+  ++ + + 
Sbjct: 249 LLEFLMENFDAVGEGTAKAFLEWAGFNPNAKVTALTPEELVKLVDKMK 296


>gi|328880442|emb|CCA53681.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           venezuelae ATCC 10712]
          Length = 427

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           L+ I    G   G  ++++G G G+LT         +V  +
Sbjct: 183 LELICRKLGLGPGDRLLDVGCGWGSLTVHAAREHKVRVTAV 223


>gi|325293572|ref|YP_004279436.1| hypothetical protein AGROH133_07719 [Agrobacterium sp. H13-3]
 gi|325061425|gb|ADY65116.1| hypothetical protein AGROH133_07719 [Agrobacterium sp. H13-3]
          Length = 366

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR---------KVIVIEKDQQFFPILKDISSQHP 94
           G+   I ++EIG G G +   +L +  R         +V ++E   +   I K+  + H 
Sbjct: 75  GAPADIRLVEIGPGRGTMMSDMLRVIRRIAPPLYETMRVHLVETSPRLCAIQKETLAAHA 134

Query: 95  NRLEIIQ 101
            RL    
Sbjct: 135 ERLTWHD 141


>gi|309361314|emb|CAP29948.2| CBR-PRMT-6 protein [Caenorhabditis briggsae AF16]
          Length = 228

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 23  KYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           K++G     D  I   I ++ G  L+G  V+++G G G+ +   L  GA +V+ I+   +
Sbjct: 15  KWLG----RDHLITPTIKKAIGNVLEGKKVLDVGCGNGHYSFDFLQWGADEVVGIDNSPE 70

Query: 82  FFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122
              I +D   + P  ++++  + +      +K F++++   ++
Sbjct: 71  MIQICQDSQKKLPESSKIDFHESNITDFSLQKHFDVATAFFVL 113


>gi|254388103|ref|ZP_05003339.1| methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
 gi|326446247|ref|ZP_08220981.1| methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
 gi|197701826|gb|EDY47638.1| methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
          Length = 281

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
                 + ++        V++IG G G     L      KV  +   +        ++  
Sbjct: 52  DRFTDYLIKTLDPHADQHVLDIGCGTGRSALRLSQQRGAKVTGVAISKVQIEHANRLAET 111

Query: 93  HP--NRLEIIQDDALKVDFEK 111
           H   +RL     DA+ + +E 
Sbjct: 112 HDLSDRLVFEHADAMHLPYED 132


>gi|66804983|ref|XP_636224.1| protein arginine methyltransferase [Dictyostelium discoideum AX4]
 gi|74996642|sp|Q54HI0|ANM2_DICDI RecName: Full=Protein arginine N-methyltransferase 2; AltName:
           Full=Histone-arginine N-methyltransferase PRMT2
 gi|60464585|gb|EAL62721.1| protein arginine methyltransferase [Dictyostelium discoideum AX4]
          Length = 512

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI---------LKDI 89
           I++S        V+++G G G L+  +   GA+KV  ++                 L DI
Sbjct: 150 ISKSKNIFKDKVVLDVGCGTGILSCFVAKAGAKKVYAVDA-SDMAHRAELIVQQNGLADI 208

Query: 90  SSQHPNRLEII 100
            +    +LE I
Sbjct: 209 VTVFKGKLEHI 219


>gi|325285907|ref|YP_004261697.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
 gi|324321361|gb|ADY28826.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
          Length = 414

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 11/114 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQ-NFLLDLNILK---KIAESSGSLDGITVIEIGAGPGNL 61
           K  +++  +S Y+I  KK   Q N LL+   +     I  S   +    V+E+ AG G L
Sbjct: 31  KFSAVREPISQYRIY-KKE--QVNSLLEQLSIDYEDTIDNSVTPIKEFKVLELFAGAGGL 87

Query: 62  TQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI 115
              L   G + V + E D+     L++          +++ D    +F ++ N 
Sbjct: 88  AVGLEKAGIKCVALNEIDKWACQTLRENRPHW----NVLEGDIKSFNFSEYNNQ 137


>gi|294678884|ref|YP_003579499.1| type 11 family methyltransferase [Rhodobacter capsulatus SB 1003]
 gi|294477704|gb|ADE87092.1| methyltransferase, type 11 family [Rhodobacter capsulatus SB 1003]
          Length = 242

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  +I  +        ++E+G G G LT+ L  L   ++ +          L ++S  
Sbjct: 28  DRLAARI--APRIAPAARILELGHGTGFLTRQLARLAPDEIWL----NDLVAPLPEMSWP 81

Query: 93  HPNRLEIIQDDALKVDFEKFFNI 115
              +++ +  DA  + F    ++
Sbjct: 82  AATKVQALPGDAAALRFPAGLDL 104


>gi|229825011|ref|ZP_04451080.1| hypothetical protein GCWU000182_00360 [Abiotrophia defectiva ATCC
           49176]
 gi|229790758|gb|EEP26872.1| hypothetical protein GCWU000182_00360 [Abiotrophia defectiva ATCC
           49176]
          Length = 350

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             +G  ++++G G   LT   L LGA+    ++ D       K+    +      I DD 
Sbjct: 204 VREGSEILDVGCGSAILTIAALKLGAKYAYAMDIDPVAVKSAKENLLIND-----ITDDI 258

Query: 105 LKVDFEKFFNISS 117
            K++         
Sbjct: 259 AKLEVGNLLEDKD 271


>gi|156975775|ref|YP_001446682.1| protein-L-isoaspartate O-methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|166220563|sp|A7MTT6|PIMT_VIBHB RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|156527369|gb|ABU72455.1| hypothetical protein VIBHAR_03519 [Vibrio harveyi ATCC BAA-1116]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  +    V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLDLKSDSNVLEIGTGSGYQTAVLAQI-VDHVYSVER----IKSLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D    +    P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWLGWEAKGPFDAI 145


>gi|11993696|gb|AAG42853.1|AF323753_8 SnogM [Streptomyces nogalater]
          Length = 278

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 4/76 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKD 88
              + + + E      G  V++IG G G     L      +V+ I       +      +
Sbjct: 48  SQRLTEMMTERIEVGPGQRVLDIGCGTGAPAVQLARATGAEVVGITISPEQVRLATAHAE 107

Query: 89  ISSQHPNRLEIIQDDA 104
                  R+     DA
Sbjct: 108 R-EGVAERVTFRCADA 122


>gi|7388003|sp|O59534|PIMT_PYRHO RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
          Length = 220

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + E +    G+ V+E+G G G    ++  +    V  IE+  +     K    +
Sbjct: 67  PHMVAIMLEIADLKPGMNVLEVGTGSGWNAALIAEIVKGDVYSIERIPELVEFAKRNLER 126

Query: 93  HP-NRLEIIQDD 103
                + +I  D
Sbjct: 127 AGVKNVHVILGD 138


>gi|332524054|ref|ZP_08400306.1| methyltransferase small domain protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315318|gb|EGJ28303.1| methyltransferase small domain protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 196

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G +++++G G G L   L         +I+ + +   + K  ++ +   + I Q +  + 
Sbjct: 58  GESLLDVGCGYGPLGIALAKTQGVSATLIDINNRAIELAKKNATYNEVEVTIYQSNIYEN 117

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQK 156
              +F        II+N P   G +++   I     +      LT++ QK
Sbjct: 118 VTGQF------DHIISNPPIRAGKKVVHEIIEKAFDFLHSNGDLTIVIQK 161


>gi|329735303|gb|EGG71595.1| O-methyltransferase [Staphylococcus epidermidis VCU045]
          Length = 164

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPI 85
           Q  ++D   L  I +         ++EIG   G  +     +     V  IE+++    +
Sbjct: 30  QVPIVDKLTLDLIRQLIRMNRTKNILEIGTAIGYSSMQFANISKDINVTTIERNEDMIHL 89

Query: 86  LKDISS--QHPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            K      ++ N++ +I+ DAL       D +         +  +   + + T LL  
Sbjct: 90  AKKFIKKYRYQNQIRLIEYDALNAFEQVNDKQYDMIFIDAAKAQSMKFFQLYTPLLKK 147


>gi|327394850|dbj|BAK12272.1| O-methyltransferase YfiC [Pantoea ananatis AJ13355]
          Length = 311

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 62/225 (27%), Gaps = 38/225 (16%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNIL-----KKIA--ESSGSLDGITVIE 53
           ++M       +  L       K    Q F+             I     +       +++
Sbjct: 60  LSMMQDKPQARPQLKKNGFTFK----QFFVAHDRCAMKVGTDGILLGAWAPVAGVKRILD 115

Query: 54  IGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDA----- 104
           IG G G +  ML         V  +E D        +   Q P   R+++ Q D      
Sbjct: 116 IGTGSGLIALMLAQRTPSNVDVDAVELDPDAAQQAHENIQQSPWAARMQVHQQDIAQWAE 175

Query: 105 -------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
                  L V    +F+      +    P     R   +                L ++E
Sbjct: 176 NCEARYSLIVSNPPYFDPG----VACATPARDSARATGSL----DHQTLLRCAAALIEEE 227

Query: 158 -VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +  +        L+   GW  +    FD++ +   P  +V
Sbjct: 228 GFFCVVLPEATGQQVIALAQADGWHLRFR--FDVAEYAHRPPHRV 270


>gi|323456079|gb|EGB11946.1| hypothetical protein AURANDRAFT_61217 [Aureococcus anophagefferens]
          Length = 1405

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 36   LKKIAESSGSLDGIT-----VIEIGAGPGNLTQMLLTLG--------ARKVIVIEKDQQF 82
            + ++  ++            V++ GAG G L+ M             A +++ +EKD   
Sbjct: 1018 IARVVPAAVIRAHAQRRRALVVDYGAGTGLLSLMAAKAARSATPDIAAPRILGVEKDADL 1077

Query: 83   FPILKDISSQHPNRLEIIQDDA 104
              + + +   +  R+E++  DA
Sbjct: 1078 AAVAERVILDNGERVEVVVGDA 1099


>gi|296104428|ref|YP_003614574.1| protein-L-isoaspartate O-methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058887|gb|ADF63625.1| protein-L-isoaspartate O-methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPDSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I   LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPAALLSQL 162


>gi|312198064|ref|YP_004018125.1| methyltransferase type 11 [Frankia sp. EuI1c]
 gi|311229400|gb|ADP82255.1| Methyltransferase type 11 [Frankia sp. EuI1c]
          Length = 284

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI- 89
            D   + ++  +     G   +E+G G G LT  LL  G      ++       IL+D  
Sbjct: 42  HDTVAVDELKAAVAGRPGPA-LELGCGTGRLTFPLLEWG-YATTALDLSPDMLKILQDRL 99

Query: 90  ----SSQHPNRLEIIQDDALKVDFEKFFNI 115
               +++  +R E +  D      ++ F I
Sbjct: 100 AEPSAAELASRAETVVGDMTSFSLDRKFGI 129


>gi|260844978|ref|YP_003222756.1| putative modification methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|257760125|dbj|BAI31622.1| putative modification methyltransferase [Escherichia coli O103:H2
           str. 12009]
          Length = 441

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTL--------GARKVIVIEKDQQFFPILKDISSQHPNRLE--I 99
            +++ GAG G L+   L           + +    E D++    L    + +  R+   I
Sbjct: 5   RLLDAGAGLGALSCAFLDRWLIGEFGFESVEATAYEIDKKLCGHLAKHLTGY-RRVTPRI 63

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
           I+ D +++   +          I N PY
Sbjct: 64  IEGDYIELATAEGLQDRGYTHAILNPPY 91


>gi|194901322|ref|XP_001980201.1| GG17013 [Drosophila erecta]
 gi|190651904|gb|EDV49159.1| GG17013 [Drosophila erecta]
          Length = 345

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 28  NFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           N L D          I +S        V+++G G G L+      GA KV+ +E      
Sbjct: 35  NMLRDSVRTEAFRDAILQSRELFRDKIVLDVGCGTGILSLFAAEAGASKVLAVES-TDIA 93

Query: 84  PILKDIS--SQHPNRLEIIQD 102
            I ++I   +Q  + +++++ 
Sbjct: 94  DIAEEIVRDNQKEDVVKVVKG 114


>gi|171185843|ref|YP_001794762.1| DNA topoisomerase VI subunit B [Thermoproteus neutrophilus V24Sta]
 gi|170935055|gb|ACB40316.1| DNA topoisomerase VI, B subunit [Thermoproteus neutrophilus V24Sta]
          Length = 530

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 27/168 (16%)

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            +  N  + ++ +         +  +   ++ +  G  + A+K    Y + + +      
Sbjct: 145 MIDTNSNSPIILDRREYPNKYRWHGTAVKVYLE--GNWLAAKKRIEDYLKRTAIIAPYA- 201

Query: 184 ATMMFD-------ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
             ++F        +        P     +       +P    ++++K++ QE+   R  T
Sbjct: 202 -EIVFKGPDLELWLKRRTTKLPPAPKEGL------PHPKSVDVDTIKQMLQES---RGMT 251

Query: 237 LRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L + L            +  L  AG   N +A  L+ E+  R+   + 
Sbjct: 252 LLEFLMENFDAVGEGTAKTFLEWAGFNPNAKATALTPEELVRLVEKMK 299


>gi|154149805|ref|YP_001403423.1| protein-L-isoaspartate O-methyltransferase [Candidatus
           Methanoregula boonei 6A8]
 gi|209573196|sp|A7I4W9|PIMT_METB6 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|153998357|gb|ABS54780.1| protein-L-isoaspartate O-methyltransferase [Methanoregula boonei
           6A8]
          Length = 217

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E         V+EIGAG G    +L  L A+ V +            ++++ 
Sbjct: 67  PYIVALMTELLHPCPEDRVLEIGAGSGYQAAILARLAAKVVTIERLGAVAAQARANLAAV 126

Query: 93  HPNRLEIIQDD 103
               +E+I+ D
Sbjct: 127 GAENVEVIEGD 137


>gi|149914834|ref|ZP_01903364.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter sp.
           AzwK-3b]
 gi|149811627|gb|EDM71462.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter sp.
           AzwK-3b]
          Length = 427

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHP 94
             + +  G   G  V+EIG G G   +        KV  +   ++   + + +   +   
Sbjct: 200 ASMVDQMGVKPGDHVLEIGCGWGGFAEYAAAERGLKVTGLTISREQYDYAVARIEKAGLS 259

Query: 95  NRLEIIQDD 103
           +R+E    D
Sbjct: 260 DRVEFKLQD 268


>gi|76800665|ref|YP_325673.1| protein-L-isoaspartate O-methyltransferase [Natronomonas pharaonis
           DSM 2160]
 gi|76556530|emb|CAI48101.1| protein-L-isoaspartate O-methyltransferase [Natronomonas pharaonis
           DSM 2160]
          Length = 246

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD 88
           L  +   ++ E+       +V+ +GAG G  T  +L       +V  ++ D++     + 
Sbjct: 60  LSPSAAGRLLEALDVEPDDSVLVVGAGVGY-TAAVLAALTDETEVHAVDIDRRLVAAARS 118

Query: 89  IS--SQHPNRL 97
               + +P  L
Sbjct: 119 NLATAGYPGVL 129


>gi|330991128|ref|ZP_08315082.1| Precorrin-6Y C(5-15)-methyltransferase [Gluconacetobacter sp.
           SXCC-1]
 gi|329761949|gb|EGG78439.1| Precorrin-6Y C(5-15)-methyltransferase [Gluconacetobacter sp.
           SXCC-1]
          Length = 415

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 29  FLLDLNILKKIAESS-----GSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEK 78
           F  D  I K+   ++         G  + +IGAG G+++ + +L   A + I +EK
Sbjct: 231 FTHDGQITKREIRAATLSALAPRRGEVLWDIGAGSGSISIEWMLRHPANRAIAVEK 286


>gi|328950160|ref|YP_004367495.1| Methyltransferase type 11 [Marinithermus hydrothermalis DSM 14884]
 gi|328450484|gb|AEB11385.1| Methyltransferase type 11 [Marinithermus hydrothermalis DSM 14884]
          Length = 216

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           IL ++ E +    G  V+++G G GNL    L  G  +V  ++  Q+    L+   +++P
Sbjct: 34  ILDRVVELAAVPPGGRVLDLGTGTGNLAGRFLDRGV-EVTGVDLSQKM---LQRAKAKYP 89

Query: 95  NRLEIIQD 102
             LE ++ 
Sbjct: 90  -TLETVEG 96


>gi|330809540|ref|YP_004354002.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377648|gb|AEA68998.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 422

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNL 61
           LN L +I        G  ++EIG G G+L
Sbjct: 178 LNKLARICRKLDLRPGDHLLEIGTGWGSL 206


>gi|319945223|ref|ZP_08019485.1| hemolysin A [Lautropia mirabilis ATCC 51599]
 gi|319741793|gb|EFV94218.1| hemolysin A [Lautropia mirabilis ATCC 51599]
          Length = 257

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 34  NILKKIAESSGSL-DGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-----DQQFFPILK 87
           N L    +++G    G+  +++G   G  T  LL  GAR+V+ IE      D       +
Sbjct: 70  NKLDAALQAAGIDCTGLDALDVGMSTGGFTHCLLARGARQVLGIEVGHGQLDPVLAADPR 129

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            +  +H +  ++   D L++           + ++      I    L N ++    P   
Sbjct: 130 VLCLEHTHIRDVHLAD-LRLPDGSAPAQGFALIVVDLSF--IAASHLLNKLATLAAPGGR 186

Query: 148 ESLTLLFQKEVG 159
            +  +  Q E+G
Sbjct: 187 LTCLIKPQFELG 198


>gi|294817418|ref|ZP_06776060.1| Methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
 gi|294322233|gb|EFG04368.1| Methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
          Length = 291

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
                 + ++        V++IG G G     L      KV  +   +        ++  
Sbjct: 62  DRFTDYLIKTLDPHADQHVLDIGCGTGRSALRLSQQRGAKVTGVAISKVQIEHANRLAET 121

Query: 93  HP--NRLEIIQDDALKVDFEK 111
           H   +RL     DA+ + +E 
Sbjct: 122 HDLSDRLVFEHADAMHLPYED 142


>gi|291618454|ref|YP_003521196.1| YfiC [Pantoea ananatis LMG 20103]
 gi|291153484|gb|ADD78068.1| YfiC [Pantoea ananatis LMG 20103]
          Length = 311

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 62/225 (27%), Gaps = 38/225 (16%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNIL-----KKIA--ESSGSLDGITVIE 53
           ++M       +  L       K    Q F+             I     +       +++
Sbjct: 60  LSMMQDKPQARPQLKKNGFTFK----QFFVAHDRCAMKVGTDGILLGAWAPVAGVKRILD 115

Query: 54  IGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDA----- 104
           IG G G +  ML         V  +E D        +   Q P   R+++ Q D      
Sbjct: 116 IGTGSGLIALMLAQRTPSNVDVDAVELDPDAAQQAHENIQQSPWAARMQVHQQDIAQWAE 175

Query: 105 -------LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
                  L V    +F+      +    P     R   +                L ++E
Sbjct: 176 NCEARYSLIVSNPPYFDPG----VACATPARDSARATGSL----DHQTLLRCAAALIEEE 227

Query: 158 -VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
                +  +        L+   GW  +    FD++ +   P  +V
Sbjct: 228 GFFCVVLPEATGQQVIALAQADGWHLRFR--FDVAEYAHRPPHRV 270


>gi|196014596|ref|XP_002117157.1| hypothetical protein TRIADDRAFT_61143 [Trichoplax adhaerens]
 gi|190580379|gb|EDV20463.1| hypothetical protein TRIADDRAFT_61143 [Trichoplax adhaerens]
          Length = 279

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           +    E         V++ G+G G   + L +    +V  +E  +    I  D++++   
Sbjct: 58  VDDCIEKLQINKTFQVLDFGSGIGGPARHLASKSRCRVKAVEIQEDLNKIAADLTNRCGL 117

Query: 94  PNRLEIIQDDALKVD 108
            +R++ ++ D  K+D
Sbjct: 118 SDRIDHVRQDIYKLD 132


>gi|154294525|ref|XP_001547703.1| hypothetical protein BC1G_13865 [Botryotinia fuckeliana B05.10]
 gi|150844705|gb|EDN19898.1| hypothetical protein BC1G_13865 [Botryotinia fuckeliana B05.10]
          Length = 422

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE--KDQQFFPILKDISSQH 93
           L +  + +       V+EIG G G+     +     +V  +    +Q+     +  ++  
Sbjct: 225 LDRFIDGAKIKPSDHVLEIGTGWGSFAIQAVKRTGCRVTSLTLSVEQKALAEKRIFAAGF 284

Query: 94  PNRLEIIQDD--ALKVDFEKF 112
            +R+E+   D  AL V  + +
Sbjct: 285 ADRIEVKLMDYRALPVPKQPY 305


>gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase B [Vibrio vulnificus CMCP6]
 gi|46396909|sp|Q8DDE5|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           CMCP6]
          Length = 426

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                 DG  +++  A PG  T  +L    AR+V+ ++ D+Q    + +   +   + ++
Sbjct: 237 NYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKV 296

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL--FQKE 157
           I  DA   + E+++      RI+ + P +    +  +      W    E +T L   Q E
Sbjct: 297 ICGDA--RNPEQWWQGEQFDRILLDAPCSATGVIRRH--PDIKWLRRAEDITALAQLQSE 352

Query: 158 VGERITAQ 165
           + + + AQ
Sbjct: 353 IFDAMWAQ 360


>gi|84503547|ref|ZP_01001598.1| hypothetical protein OB2597_03569 [Oceanicola batsensis HTCC2597]
 gi|84388037|gb|EAQ01085.1| hypothetical protein OB2597_03569 [Oceanicola batsensis HTCC2597]
          Length = 200

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQDDALKVDFEKFFN 114
           G G  T +   L  ++V+ +E D  +  +++   + +P R  +E+I  D           
Sbjct: 39  GSGGSTVLASELPGKQVVSVESDADWARMMRAWFALNPGRSPVELIHADIGPTRDWGHPA 98

Query: 115 ISSPIRIIANLP 126
            +S   +    P
Sbjct: 99  DASAWALFPAYP 110


>gi|325696648|gb|EGD38537.1| methyltransferase domain protein [Streptococcus sanguinis SK160]
          Length = 195

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 18/144 (12%)

Query: 25  MGQN--FLLDLNI-LKKIAES--------SGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+ +              G  V+++G G G L   L        
Sbjct: 24  LGQRLTFLTDAGVFSKKMIDYGSRVLLSVLDFETGEQVLDVGCGYGPLGLTLAKAQGVTA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ +Q+   + +  + ++    +I Q +  +      F+      II+N P   G ++
Sbjct: 84  TMVDINQRALDLAQKNAERNQISADIFQSNVYE-KVSGIFD-----HIISNPPIRAGKQV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK 156
           +   IS           LTL+ QK
Sbjct: 138 VHEVISGSYEHLTEGGDLTLVIQK 161


>gi|296128374|ref|YP_003635624.1| LmbE family protein [Cellulomonas flavigena DSM 20109]
 gi|296020189|gb|ADG73425.1| LmbE family protein [Cellulomonas flavigena DSM 20109]
          Length = 464

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            V+E+G   G LT  L             D       ++  + HP+ +E++         
Sbjct: 303 RVLEVGCSIGVLTAELAPRCDALTATDVADAAL-QRARERLAGHPH-VEVVHGALGGAGD 360

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           +        + +++ + Y +    L   +
Sbjct: 361 DALPGGPFDMVVLSEVGYYLSWADLTQAL 389


>gi|229530346|ref|ZP_04419734.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae
           12129(1)]
 gi|229332119|gb|EEN97607.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae
           12129(1)]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLALTPETKVLEIGTGSGYQTAVLAKL-VNHVFTVER----IKTLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D  + +    P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWQGWPARGPFDAI 145


>gi|86604895|ref|YP_473658.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Synechococcus sp. JA-3-3Ab]
 gi|86553437|gb|ABC98395.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Synechococcus sp. JA-3-3Ab]
          Length = 330

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 14/105 (13%)

Query: 14  LSHYKIIPKKYMGQNFL---LDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLT 67
           L HY   P++    NF+    D   + ++    G      G TV+++G G G   ++L  
Sbjct: 58  LGHYGSPPRRK---NFIQAKHD--FVHEMVRWGGLDRLPPGTTVLDVGCGIGGSCRILAR 112

Query: 68  LGARKVIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVDFEK 111
                V  I    Q     ++++    P R ++   DAL + F  
Sbjct: 113 DYGFVVTGITISPQQVQRAQELTPPDLPVRFQV--ADALNLPFPD 155


>gi|46445882|ref|YP_007247.1| putative RNA methyl transferase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|51316633|sp|Q6MEM7|Y248_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc0248
 gi|46399523|emb|CAF22972.1| putative RNA methyl transferase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 434

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 2/114 (1%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QH 93
           I KKI   +  L    ++++  G G +T +LL      V  IE +       K+ S   H
Sbjct: 275 IYKKICSLTIQLKSKKILDLYCGFG-ITSLLLASQGHFVTGIEYNSDAIRFAKENSKLNH 333

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
              +E ++ D  K+      +      +I N P    ++ +   + +       
Sbjct: 334 LPHVEFLEGDVEKILPICLKSQKCVDLVIVNPPRIGLSKSVIKILMSALPEDMI 387


>gi|324096424|gb|ADY17741.1| RH50948p [Drosophila melanogaster]
          Length = 210

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 19/96 (19%)

Query: 22  KKYMGQNFLLDL--NILKK--------IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            K +G   LLD   NI +         +     + +G  +  +G G G L   LL    +
Sbjct: 3   SKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICILGGGDGALLYELLKENPK 62

Query: 72  KVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
            V+++E D        ++  Q  N+ L +I  D L+
Sbjct: 63  HVVMLEID--------ELVMQTCNKYLNVICGDVLE 90


>gi|322375728|ref|ZP_08050240.1| ribosomal protein L11 methyltransferase [Streptococcus sp. C300]
 gi|321279436|gb|EFX56477.1| ribosomal protein L11 methyltransferase [Streptococcus sp. C300]
          Length = 316

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIHVATG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|315937136|gb|ADU56143.1| hypothetical protein CA915-22 [uncultured organism CA915]
          Length = 273

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          ++ +I        G   +++G G G  ++     G   V+ +E D +     +
Sbjct: 36 LIDRIVA---LSPGKRFVDVGCGTGISSRPFQAAGC-TVLGVEPDARMAAFAR 84


>gi|315923962|ref|ZP_07920190.1| methyltransferase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622802|gb|EFV02755.1| methyltransferase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 259

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            ++  +    V+E G G GN+T  L   G  +V  ++  ++   +  + +      +   
Sbjct: 44  NAARPIK--KVLEFGCGTGNITLELAKKG-FEVTAVDLSEEMLTVADEKADTAGLPVRFF 100

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           + D      ++ F+  +      ++ Y    + + N+I
Sbjct: 101 KGDMSNFRIDEQFD--AVFCCCDSVNYLPTMQDVENFI 136


>gi|302758660|ref|XP_002962753.1| hypothetical protein SELMODRAFT_79269 [Selaginella moellendorffii]
 gi|300169614|gb|EFJ36216.1| hypothetical protein SELMODRAFT_79269 [Selaginella moellendorffii]
          Length = 311

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 3/117 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPNRLEI 99
                G  V+E G G G+LT  L    A    V   D    +     KD  +   N + +
Sbjct: 99  LELRPGCVVLESGTGSGSLTTSLARAVAPSGHVHTFDFHEPRASLARKDFENNRINNVTV 158

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
              D     F +     +    +      +    +   +  +     +       Q+
Sbjct: 159 GVRDIQGQGFPEELTDKANAVFLDLPQPWLAVESVLICLRPNASCCSFSPCIEQVQR 215


>gi|296225309|ref|XP_002758436.1| PREDICTED: hemK methyltransferase family member 1-like [Callithrix
           jacchus]
          Length = 338

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISS--QHPNRLE 98
           + GS     ++E+G G G ++  LL  L   +VI ++K +    +  + +   +  +R+ 
Sbjct: 154 AVGSPGSPLILEVGCGSGAISLSLLSQLPQSRVIAVDKGETAISLTHENAQRLRLQDRIW 213

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           II  D                 +++N PY
Sbjct: 214 IIHLDMTSEGSWTHLPWGPVDLVVSNPPY 242


>gi|269139935|ref|YP_003296636.1| endonuclease VIII [Edwardsiella tarda EIB202]
 gi|267985596|gb|ACY85425.1| endonuclease VIII [Edwardsiella tarda EIB202]
 gi|304559770|gb|ADM42434.1| Endonuclease VIII [Edwardsiella tarda FL6-60]
          Length = 280

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 187 MFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
           +  I P V  P+  +T   +      +P  C  +    +  + F          L     
Sbjct: 123 LLRIGPDVLDPA--LTEAQVR-ERLCSPAFCRRQLGALLLDQRF-------LAGLGNYLR 172

Query: 247 ENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             +L QAG+    RA  LS      + + L
Sbjct: 173 VEILWQAGVSPQRRATELSPAQLTSLCHAL 202


>gi|271501817|ref|YP_003334843.1| protein-L-isoaspartate O-methyltransferase [Dickeya dadantii
           Ech586]
 gi|270345372|gb|ACZ78137.1| protein-L-isoaspartate O-methyltransferase [Dickeya dadantii
           Ech586]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
              + ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYTVARMTELLRLTPVSRVLEIGTGSGYQTAILAHL-VQHVFSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I + L+   
Sbjct: 116 RLKQLDLHNISTRHGDGWQGWASKGPFDAIIVTAAPPEIPSALMEQL 162


>gi|300869413|ref|ZP_07113999.1| polyketide synthase [Oscillatoria sp. PCC 6506]
 gi|237880754|gb|ACR33079.1| polyketide synthase [Oscillatoria sp. PCC 6506]
 gi|300332593|emb|CBN59197.1| polyketide synthase [Oscillatoria sp. PCC 6506]
          Length = 1633

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 33   LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD--QQFFPILKDI 89
              ++     S     G+ ++EIGAG G+ T  LL  L A +V     D    F    ++ 
Sbjct: 1142 QRVVGAAVSSLPQGRGMRILEIGAGTGSTTSYLLPNLPADRVEYFFTDIGAFFVAKAQEK 1201

Query: 90   SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
             + +P     +    L ++ E          +I        T+ L  
Sbjct: 1202 FADYP----FVNYQILDIEQEPEAAARGYYDLIIAPNVLHATKDLRE 1244


>gi|254490826|ref|ZP_05104009.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophaga thiooxidans
           DMS010]
 gi|224463998|gb|EEF80264.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophaga thiooxydans
           DMS010]
          Length = 445

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           ++  ++++  +         ++++  G GN T  L      +V+ +E D       ++
Sbjct: 279 INEKMIQRALDLLDIQPEDRILDLFCGLGNFTLPLAKR-VTEVVGVEGDLALVKHAQN 335


>gi|219871403|ref|YP_002475778.1| phosphatidylserine synthase [Haemophilus parasuis SH0165]
 gi|262828453|sp|B8F678|TRMN6_HAEPS RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|219691607|gb|ACL32830.1| phosphatidylserine synthase [Haemophilus parasuis SH0165]
          Length = 235

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +   +   ++++G G G +  ML    A  ++  +E ++  F   ++ + + P  NR+++
Sbjct: 31  ADPSNARHILDLGTGTGLIAIMLAQRTASAQITALELEENAFHQAQENAQRCPWNNRIDV 90

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
           +Q D +     K F++     I++N PY
Sbjct: 91  LQADIMTWKSTKKFDL-----IVSNPPY 113


>gi|46201645|ref|ZP_00054651.2| COG0500: SAM-dependent methyltransferases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 230

 Score = 37.5 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +      + +EIG G G     L   G  +++ I+ D     ++ D +     R + +  
Sbjct: 39  AQCSPSHSFLEIGCGTGAFLGYLRKKGVTRLLGIDHDSALASVIPDTA-----RHDFVCR 93

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           D  +V  ++       I ++  L +   +  L   
Sbjct: 94  DVWEVASDESLGRFDRIVLLDVLEHFEASDALRLL 128


>gi|332364547|gb|EGJ42318.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK355]
          Length = 317

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 228

Query: 103 DALK 106
           D L+
Sbjct: 229 DLLR 232


>gi|332358375|gb|EGJ36200.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK49]
          Length = 318

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 170 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 229

Query: 103 DALK 106
           D L+
Sbjct: 230 DLLR 233


>gi|328945351|gb|EGG39504.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK1087]
          Length = 317

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 228

Query: 103 DALK 106
           D L+
Sbjct: 229 DLLR 232


>gi|327468705|gb|EGF14184.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK330]
          Length = 317

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 228

Query: 103 DALK 106
           D L+
Sbjct: 229 DLLR 232


>gi|327459572|gb|EGF05918.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK1]
 gi|327490772|gb|EGF22553.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK1058]
 gi|332358562|gb|EGJ36386.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK1056]
 gi|332364868|gb|EGJ42637.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK1059]
          Length = 318

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 170 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 229

Query: 103 DALK 106
           D L+
Sbjct: 230 DLLR 233


>gi|325697804|gb|EGD39688.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK160]
          Length = 317

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 228

Query: 103 DALK 106
           D L+
Sbjct: 229 DLLR 232


>gi|325693859|gb|EGD35778.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK150]
          Length = 318

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 170 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 229

Query: 103 DALK 106
           D L+
Sbjct: 230 DLLR 233


>gi|325689541|gb|EGD31546.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK115]
          Length = 318

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 170 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 229

Query: 103 DALK 106
           D L+
Sbjct: 230 DLLR 233


>gi|324992256|gb|EGC24178.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK405]
          Length = 317

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 228

Query: 103 DALK 106
           D L+
Sbjct: 229 DLLR 232


>gi|324990425|gb|EGC22363.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK353]
          Length = 317

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 228

Query: 103 DALK 106
           D L+
Sbjct: 229 DLLR 232


>gi|307133573|dbj|BAJ19063.1| carboxyl methyltransferase [Streptomyces sp. SANK 62799]
          Length = 259

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 18/117 (15%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
            I+  Y    +            + +   +        TV+++ AG G LT+ L+     
Sbjct: 14  EIVERYD-RFR----------PGVPEAAVDWLVPDGCETVVDLAAGTGALTRSLVDR-VE 61

Query: 72  KVIVIEKDQQFFPIL------KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            VI +E D +    L        I      R+ +    A  V     ++   P R +
Sbjct: 62  HVIAVEPDPRMRKTLGRNCPGARILPGTGERIPLPDGQADAVLISMAWHWLDPQRAV 118


>gi|262283463|ref|ZP_06061229.1| ribosomal protein L11 methyltransferase [Streptococcus sp.
           2_1_36FAA]
 gi|262260954|gb|EEY79654.1| ribosomal protein L11 methyltransferase [Streptococcus sp.
           2_1_36FAA]
          Length = 318

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 170 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 229

Query: 103 DALK 106
           D L+
Sbjct: 230 DLLR 233


>gi|219852191|ref|YP_002466623.1| Methyltransferase type 12 [Methanosphaerula palustris E1-9c]
 gi|219546450|gb|ACL16900.1| Methyltransferase type 12 [Methanosphaerula palustris E1-9c]
          Length = 293

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 11/72 (15%)

Query: 27  QN----FLLDLNIL---KKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           QN    +L         +KI           G  V++IG G G L   L   G R V V+
Sbjct: 46  QNVLELYLKSRKTAAWQEKIRSHLDFMKISAGSRVLDIGGGTGTLAVPLAARGCR-VTVV 104

Query: 77  EKDQQFFPILKD 88
           E        L +
Sbjct: 105 EPSPMMREGLAE 116


>gi|157151259|ref|YP_001451093.1| ribosomal protein L11 methyltransferase [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157076053|gb|ABV10736.1| ribosomal protein L11 methyltransferase [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 318

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P    + +   
Sbjct: 170 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPGMENIHVAPG 229

Query: 103 DALK 106
           D L+
Sbjct: 230 DLLR 233


>gi|156367590|ref|XP_001627499.1| predicted protein [Nematostella vectensis]
 gi|156214410|gb|EDO35399.1| predicted protein [Nematostella vectensis]
          Length = 132

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 40  AESSGSLDGITVIEIGAGPG-NLTQML--LTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
            E+ G      ++E+G GPG  L   L  +  G+ KV  ++       +     +     
Sbjct: 21  VETLGIQPNHRILEVGFGPGVGLAAALRRVKEGSGKVYGVDISSIVLSLTNQAFATEIKS 80

Query: 95  NRLEIIQDDALKVDFEKFF 113
            +LEI+Q D + + + K F
Sbjct: 81  GKLEIVQADVINLPYGKNF 99


>gi|311748643|ref|ZP_07722428.1| putative transferase [Algoriphagus sp. PR1]
 gi|126577169|gb|EAZ81417.1| putative transferase [Algoriphagus sp. PR1]
          Length = 236

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK 106
            ++++G G G +  ML        +  +E D++     K    + P  NR+++ + +   
Sbjct: 40  RILDVGTGTGVIALMLAQRYRESFLTAVELDEKAAEQAKSNFKESPFSNRMKLWKGEFQS 99

Query: 107 VDFEKFFNISSPIRIIANLPY 127
              ++ F+      I++N PY
Sbjct: 100 YQSDEKFD-----MIVSNPPY 115


>gi|145588675|ref|YP_001155272.1| methyltransferase small [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047081|gb|ABP33708.1| methyltransferase small [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 389

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 8/112 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                    +IG G G L+ +L     +K+I  ++D +     ++   +     +I+   
Sbjct: 204 AIQKSSIAFDIGVGTGVLSVVLAVREVKKIIATDQDDRAIACAQENIERLGLESQIV--- 260

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            LK +    F       I+ N P+        + +    + P  + L    Q
Sbjct: 261 VLKTN---LFPDDKAALIVCNPPWLPARP--SSTLEYAVYDPESQMLKGFLQ 307


>gi|115390793|ref|XP_001212901.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114193825|gb|EAU35525.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 527

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 27/190 (14%)

Query: 28  NF--LLDLNILKKIAESSGS------LDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK 78
           NF  L+     ++    +              I++G GPG NL   L  L   +V+ IE 
Sbjct: 236 NFFELVHPAYFRQTVALADLVTRFVKKPRPRAIDVGPGPGTNLLAFLELLPQTEVLAIEP 295

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
               F  L D        +  +++D L V  E              + Y + T    ++ 
Sbjct: 296 SDIAFQYLTDHFKD-GTMVTCLREDFLCVPVE-----------SGEVDYIMSTGASHHFY 343

Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW------RTKATMMFDISP 192
           +        + L       + + + +   +     L++L                 D+ P
Sbjct: 344 TDGFLQRSAQWLRPGGYWFIADEMISPFETRKERHLNLLRHHLAYMVPLCFPWPAMDVDP 403

Query: 193 HVFFPSPKVT 202
                   V 
Sbjct: 404 RTPSEREFVD 413


>gi|21219512|ref|NP_625291.1| methyltransferase [Streptomyces coelicolor A3(2)]
 gi|11071204|emb|CAC14363.1| putative methyltransferase [Streptomyces coelicolor A3(2)]
          Length = 249

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  V+++  GPG  T  L   G   V  ++         +  ++    ++  +Q DA
Sbjct: 41  IPAGARVLDLCCGPGVFTVPLARRGYD-VTGVDLSPAMLERARKRAADAGAQVTYVQADA 99

Query: 105 LKVDFEKFFNI 115
              +    F++
Sbjct: 100 RAYEPPGAFDV 110


>gi|71419194|ref|XP_811094.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70875719|gb|EAN89243.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 275

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-------- 87
           + +I   +      T  ++G G G++   +  L   + + +E +++   + +        
Sbjct: 100 VARIVRVAKISSQDTFYDLGCGNGSVLFQVALLTGARCVGVEINERNATVAQDAWRRLRP 159

Query: 88  --DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
             +     P  +EII  D   +  ++ F  SSP+   ANL
Sbjct: 160 MIEARRGEPVEVEIICADFCSLMRDEKFFGSSPVIWAANL 199


>gi|113475802|ref|YP_721863.1| type 12 methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110166850|gb|ABG51390.1| Methyltransferase type 12 [Trichodesmium erythraeum IMS101]
          Length = 234

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           +++IG G G LT+ +L+L   K++ ++   +   I K   +     +++I  D
Sbjct: 40  ILDIGVGTGLLTEKMLSLANYKIVGVDFSSRMLEIAKKRLAISD--VKLICQD 90


>gi|325290286|ref|YP_004266467.1| demethylmenaquinone methyltransferase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965687|gb|ADY56466.1| demethylmenaquinone methyltransferase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 238

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88
           +D +  +K  ++  +  G+ ++++  G G +   +      + +V  ++  +Q     ++
Sbjct: 34  MDRSWRRKTVQTVKAGPGLNILDLCCGTGKMVMEIGKRVGPSGRVTGLDFSEQMLEKARE 93

Query: 89  ISSQHP--NRLEIIQDDALKVDFEK 111
              ++P  +R+++IQ DA+K+ FE+
Sbjct: 94  NLLEYPYRDRVDLIQGDAMKLPFEQ 118


>gi|307275915|ref|ZP_07557048.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX2134]
 gi|306507245|gb|EFM76382.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis
           TX2134]
          Length = 315

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     L A+ V   + D+      K+    +P    + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASRYLEAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|308070893|ref|YP_003872498.1| phospholipid N-methyltransferase [Paenibacillus polymyxa E681]
 gi|305860172|gb|ADM71960.1| Phospholipid N-methyltransferase [Paenibacillus polymyxa E681]
          Length = 232

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 18/112 (16%)

Query: 9   SLKTILSHYKIIPKKY--MGQNFLLDLN-----------ILKKIAESSGSLDGITVIEIG 55
           ++KT++   ++   KY    Q+F+               +  K+ + +   +   V E+G
Sbjct: 35  TIKTVMEENQLKLNKYLLFLQSFIRSPKNVGSVIPSSRFLATKMVKQAPWNEIKAVAELG 94

Query: 56  AGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDI---SSQHPNRLEIIQD 102
           +G G +T+ +        KV++ E ++     L+      S HPN  ++++ 
Sbjct: 95  SGTGAITRFISAQVSEPTKVLLFEMNENMRNNLQTEYPDFSCHPNAAQLVEA 146


>gi|296533933|ref|ZP_06896456.1| possible rRNA (guanine-N(2)-)-methyltransferase [Roseomonas
           cervicalis ATCC 49957]
 gi|296265737|gb|EFH11839.1| possible rRNA (guanine-N(2)-)-methyltransferase [Roseomonas
           cervicalis ATCC 49957]
          Length = 189

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDA 104
           +   V++  AG G L    L+ GA     IE+D+    IL+   +  +  + + +I  DA
Sbjct: 41  EDALVLDAFAGTGALGLEALSRGAAHATFIEQDRVALAILRGNIAACRAEDAVRVIGGDA 100

Query: 105 LK 106
            +
Sbjct: 101 TR 102


>gi|239979273|ref|ZP_04701797.1| methyltransferas [Streptomyces albus J1074]
 gi|291451152|ref|ZP_06590542.1| methyltransferase [Streptomyces albus J1074]
 gi|291354101|gb|EFE81003.1| methyltransferase [Streptomyces albus J1074]
          Length = 224

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+   D  +L +   +     G  V+++G G G +       GAR V  ++         
Sbjct: 22  QH---DTALLTRAVTAEQPGPGTEVLDLGTGTGAVALHAARTGAR-VTAVDISWTAVLTA 77

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +  +++   RL + + D       + F++     +++N PY
Sbjct: 78  RLNAARARCRLRVHRGDLTAPVTGRTFDL-----VVSNPPY 113


>gi|222152320|ref|YP_002561495.1| hypothetical protein SUB0125 [Streptococcus uberis 0140J]
 gi|222113131|emb|CAR40540.1| conserved hypothetical protein [Streptococcus uberis 0140J]
          Length = 318

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           ++EIG+G GNL Q LL    + +  + IE D     +   I+    +    IQ+DA++
Sbjct: 113 ILEIGSGTGNLAQTLLNNSKKSLDYLGIELDDLLIDLSASIAEIIGSSARFIQEDAVR 170


>gi|196044649|ref|ZP_03111884.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|196024684|gb|EDX63356.1| conserved hypothetical protein [Bacillus cereus 03BB108]
          Length = 239

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G  V+EIG G G     +      KV  +EK++      KD  S     +++I+ + 
Sbjct: 38  GANVLEIGCGTGKTAAYMTKECGYKVTAVEKNEIMIQKAKDRWSFEGLDIQLIEGNV 94


>gi|168039512|ref|XP_001772241.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676411|gb|EDQ62894.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 349

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK--DISSQHP 94
           +++ +  G   G  V+++G G G   + +       V  I  +       +  +  +   
Sbjct: 104 ERVVDLLGVKPGQKVLDVGCGVGGPMRAIAAYSQAHVTGITINDYQVARARSHNKKAGLD 163

Query: 95  NRLEIIQDDALKVDFE 110
           N  E++  + L + FE
Sbjct: 164 NLCEVVCGNFLFMPFE 179


>gi|86607228|ref|YP_475991.1| hypothetical protein CYA_2614 [Synechococcus sp. JA-3-3Ab]
 gi|86609716|ref|YP_478478.1| hypothetical protein CYB_2274 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86555770|gb|ABD00728.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
 gi|86558258|gb|ABD03215.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 258

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
            +++ + +    G TV+E+ +G G     L       V  IEK+       +    ++  
Sbjct: 31  TERLFKFAEFRRGETVLELASGLGYTAIRLAKRYGIHVTGIEKNPDNIARTRANVSAAGL 90

Query: 94  PNRLEIIQDDALKVDF 109
             ++EI++ D   +D 
Sbjct: 91  AGQVEILEGDIFHLDQ 106


>gi|325526306|gb|EGD03917.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. TJI49]
          Length = 172

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ +         V+ IGAG G L   L+   A+ V  ++ D        D    
Sbjct: 63  PRVEARVLQELAVKKHENVLVIGAGSGYL-AALIAHRAQHVTAVDIDPAIVKFAADNLRD 121

Query: 93  HP-NRLEIIQDD 103
           +     E++  D
Sbjct: 122 NGVTNAEVVLGD 133


>gi|262831253|sp|Q8EI95|TRMN6_SHEON RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
          Length = 236

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KDISSQHPNRLEIIQD 102
                 +++IGAG G L+ M       ++  +E +++         + S   +RL +I  
Sbjct: 32  LSQAQQILDIGAGSGLLSLMAAQRSLGRITAVELEEKAAAACLYNMVQSPWADRLSVIHC 91

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D      +  ++      II N PY
Sbjct: 92  DIQDFCQQTQYH-GFFDHIICNPPY 115


>gi|227538791|ref|ZP_03968840.1| SAM-dependent methyltransferase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241300|gb|EEI91315.1| SAM-dependent methyltransferase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 274

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                   +++IG G G  ++ L  L  +  +V   D+    I K+ SS+  N+ ++I+ 
Sbjct: 42  LHLKPQSIILDIGGGTGKYSEWLSKLQHQVYLVEPIDKHLH-IAKERSSKLKNKFQVIKG 100

Query: 103 DALKVDFEKFF 113
           +A K++F   F
Sbjct: 101 EARKLEFPNNF 111


>gi|219121011|ref|XP_002185737.1| spermine/spermidine synthase [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|209582586|gb|ACI65207.1| spermine/spermidine synthase [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 275

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 14/119 (11%)

Query: 49  ITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH------PNRLEIIQ 101
             ++ +G G G + + +      ++++++E D     + K   S          RL II 
Sbjct: 74  QRILIVGGGDGGILREICRHDCVKEIVLVEIDPVVIQVSKKFFSNSTATRFDDPRLRIIH 133

Query: 102 DDALKVDFEKFFNISSPIRII---ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            DA         +      +I    + P    T L              +   +  Q E
Sbjct: 134 ADAADF----LKDQKDAFDVIIGDTSDPVGPATSLFQPTFYESMHEALRDQGIICMQAE 188


>gi|156936955|ref|YP_001434751.1| methyltransferase small [Ignicoccus hospitalis KIN4/I]
 gi|156565939|gb|ABU81344.1| methyltransferase small [Ignicoccus hospitalis KIN4/I]
          Length = 194

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLE 98
           AE         V+++G G G L  ++  L    +V +++ +       K  +  +  R+ 
Sbjct: 47  AEFMEIPKEGKVLDVGCGYGVLGILMAKLNPNLEVYMVDVNPVAVDAAKRNAELNGVRVT 106

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
           ++Q +    +      I     I++N P   G  ++   I      
Sbjct: 107 VLQGNL--YEPTDLLGIKDFSTIVSNPPLAAGKEVVKEIIEGAPAR 150


>gi|126466013|ref|YP_001041122.1| spermidine synthase [Staphylothermus marinus F1]
 gi|126014836|gb|ABN70214.1| spermidine synthase [Staphylothermus marinus F1]
          Length = 247

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           IA +    +  TV+EIG G G     L   GA+++I I+ D 
Sbjct: 80  IAWAEAVSNKDTVLEIGTGLGRTNYCLQYSGAKQIITIDIDP 121


>gi|24372535|ref|NP_716577.1| hypothetical protein SO_0948 [Shewanella oneidensis MR-1]
 gi|24346547|gb|AAN54022.1|AE015540_2 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 220

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KDISSQHPNRLEIIQD 102
                 +++IGAG G L+ M       ++  +E +++         + S   +RL +I  
Sbjct: 16  LSQAQQILDIGAGSGLLSLMAAQRSLGRITAVELEEKAAAACLYNMVQSPWADRLSVIHC 75

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D      +  ++      II N PY
Sbjct: 76  DIQDFCQQTQYH-GFFDHIICNPPY 99


>gi|330467262|ref|YP_004405005.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Verrucosispora maris AB-18-032]
 gi|328810233|gb|AEB44405.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Verrucosispora maris AB-18-032]
          Length = 360

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH 93
           +++   +     G  V+EIG G G    +L  L     +V  I+   +       I ++ 
Sbjct: 34  IRRELAALQVRAGDRVLEIGTGSGYSGALLAHLCCPDGQVTSIDISDELVRRAAAIHAER 93

Query: 94  P-NRLEIIQDDAL 105
               ++    D L
Sbjct: 94  GVTSVDCHVGDGL 106


>gi|326916713|ref|XP_003204649.1| PREDICTED: UPF0431 protein C1orf66 homolog [Meleagris gallopavo]
          Length = 518

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 17/85 (20%)

Query: 13  ILSHYKIIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
           +L  + + PKK      +G        +L+++++++G      V+++GAG G+L++ L  
Sbjct: 116 LLRRH-VKPKKQHEIWRLG-------KVLQRLSQATGC---EHVVDVGAGQGHLSRFLAF 164

Query: 68  LGARKVIVIEKDQQFFPILKDISSQ 92
                +  +E D +    L +   Q
Sbjct: 165 SLGLSITAVEGDGRLVS-LAEHFDQ 188


>gi|294507034|ref|YP_003571092.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
 gi|294343362|emb|CBH24140.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
          Length = 206

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           ++ ++ E +   +   + ++G+G G +          + + IE D       +  + +  
Sbjct: 60  VVDRMLELADVDETDVLYDLGSGDGRIVIRAARTHGARGVGIEIDPDLVKKARKNAKEAG 119

Query: 94  -PNRLEIIQDDALKVDFEK 111
             + +E  Q D  + D  +
Sbjct: 120 VADLVEFRQGDLFEADISE 138


>gi|162148997|ref|YP_001603458.1| methionine biosynthesis MetW [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545251|ref|YP_002277480.1| methionine biosynthesis protein MetW [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787574|emb|CAP57170.1| Methionine biosynthesis MetW [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209532928|gb|ACI52865.1| methionine biosynthesis protein MetW [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 201

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           LD  ++  +        G  V++IG+G G L   L          IE D      +++++
Sbjct: 3   LDQRLIADMI-----QPGTRVLDIGSGDGALLDYLFRTRRCDAQGIEID------MQEVT 51

Query: 91  SQHPNRLEIIQDDA 104
               + L ++  DA
Sbjct: 52  RSVAHGLPVMHGDA 65


>gi|126274598|ref|XP_001387602.1| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|126213472|gb|EAZ63579.1| predicted protein [Pichia stipitis CBS 6054]
          Length = 340

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
               G  V+++G G G L+      GA+ V  ++         ++I +     +++ +IQ
Sbjct: 51  DLFKGKIVLDVGCGTGILSMFAAKAGAKHVYSVDM-SNIIEKAREIVALNGFEDKITLIQ 109

Query: 102 D 102
            
Sbjct: 110 G 110


>gi|167647339|ref|YP_001685002.1| methyltransferase small [Caulobacter sp. K31]
 gi|167349769|gb|ABZ72504.1| methyltransferase small [Caulobacter sp. K31]
          Length = 245

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 47  DGITVIEIGAGP-GNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDD 103
            G  VIE G G  G L          + + +E+D     + +     +   +R+E++  D
Sbjct: 39  PGERVIEAGCGVGGALLAAASRRKGARFVGLERDPAAADLARGNIALNGLADRVEVVTGD 98

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
                  +  ++     +I+N P+
Sbjct: 99  I--ERGFRALDLPVFDAVISNPPF 120


>gi|77359469|ref|YP_339044.1| SAM-dependent methyltransferase(yfiC) [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123587949|sp|Q3IG80|TRMN6_PSEHT RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|76874380|emb|CAI85601.1| conserved protein of unknown function ; putative SAM-dependent
           methyltransferase(yfiC) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 232

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFF-PILKDISSQHPNRLEI 99
           +   +  ++++IG G G L  ++    + ++    +E D+  +   L++I++     +E+
Sbjct: 31  ANLSNANSLLDIGTGTG-LLALMCKQRSPQLTITAVEVDKNAYQQALQNIAASPWPNIEV 89

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
            Q      +  + F++     +IAN PY
Sbjct: 90  HQQSIQTFNSAQPFDV-----VIANPPY 112


>gi|302550701|ref|ZP_07303043.1| methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302468319|gb|EFL31412.1| methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 230

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 14/132 (10%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
            I  ++    G  ++E+G+G G +T  LL  G   V  ++   +   +L+ +        
Sbjct: 37  DIIAAAVP-KGAHILELGSGVGRMTHALLERG-FTVTAVD---ESAEMLERVRGA----- 86

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
             I     ++D  + F+    + ++A+   + G   +   +         E  ++L Q+E
Sbjct: 87  RTICGPIEELDLGEKFD----VVLLASFLVHAGDAEIRRGLLRTCVRHLAEGGSVLIQRE 142

Query: 158 VGERITAQKNSP 169
             +  T      
Sbjct: 143 GEDYHTNVPRER 154


>gi|189219933|ref|YP_001940573.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
 gi|189186791|gb|ACD83976.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
          Length = 242

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
           +     G  +++IGAG G              +V+ ++++      L+  + +   N L+
Sbjct: 70  ALRLKPGEKIVDIGAGTGYFAVKFARAVGPEGEVLALDREPAMVDYLRKRAQKEGLNNLK 129

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
           +     +  +  K    S+ +    N  ++I        ++          + 
Sbjct: 130 VRH---VPTNDPKLKKQSADLIFFCNSYHHIHNPGYLKKLANALKENGRICVI 179


>gi|126459555|ref|YP_001055833.1| DNA topoisomerase VI subunit B [Pyrobaculum calidifontis JCM 11548]
 gi|126249276|gb|ABO08367.1| DNA topoisomerase VI, B subunit [Pyrobaculum calidifontis JCM
           11548]
          Length = 526

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 55/168 (32%), Gaps = 27/168 (16%)

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            +  N  + ++ +         +  +   ++ +  G  + A+K    Y + + +      
Sbjct: 144 MIDTNKNSPIILDRREYPNRQKWHGTAVKVYLE--GNWLGAKKRIEEYIKRTAIIAPYA- 200

Query: 184 ATMMFD-------ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
             ++F        +        P     +       +P    +++LK++ Q +   R  T
Sbjct: 201 -EIVFKGPDLELWLKRRTTKLPPAPKEGL------PHPKSVDVDTLKQMIQAS---RGMT 250

Query: 237 LRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L + L            +  L  AG   N +   L+ E+  R+   + 
Sbjct: 251 LLEFLTENFDAVGEGTAKAFLEWAGFNPNAKVAGLTPEELVRLVEKMK 298


>gi|145590152|ref|YP_001156749.1| cyclopropane-fatty-acyl-phospholipid synthase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048558|gb|ABP35185.1| Cyclopropane-fatty-acyl-phospholipid synthase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 431

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 24/155 (15%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFP--ILKDISSQ 92
           +K+I  S  +  G  ++EIG G G  + + L    A   + +  +Q+ +    L ++SSQ
Sbjct: 190 IKRILTSLDTNPGDHILEIGCGWGGVMEEALRNETAITGLTLSTEQKAYAEKRLANVSSQ 249

Query: 93  HPN--RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
             N    E+   D    D ++ F+              I +  +F  +    WP +++++
Sbjct: 250 TSNAKHFEVRLQD--YRDCQERFD-------------GIASVEMFEAVGEKHWPEYFQTI 294

Query: 151 TLLFQKE----VGERITAQKNSPHYGRLSVLTGWR 181
               +      V   + A++    Y   +      
Sbjct: 295 AKCLKTGGKACVQTIVIAEELFERYRHNTDFIQQY 329


>gi|108760285|ref|YP_632111.1| hypothetical protein MXAN_3931 [Myxococcus xanthus DK 1622]
 gi|108464165|gb|ABF89350.1| conserved domain protein [Myxococcus xanthus DK 1622]
          Length = 290

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 3/99 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
            ++ +++   +    G  V+E+G G G  ++ L+T    R +  ++         K+   
Sbjct: 67  ESLYQRVVGQAELS-GREVLEVGCGRGGGSEYLMTRLKPRSLTAVDLSDVAIARCKENYR 125

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
                 ++    AL  +  + F++   I      P  + 
Sbjct: 126 LDGLSFQVGNACALPFEDRR-FDVVVNIESSHCYPSQLT 163


>gi|20094199|ref|NP_614046.1| RNA methylase [Methanopyrus kandleri AV19]
 gi|19887221|gb|AAM01976.1| Predicted RNA methylase [Methanopyrus kandleri AV19]
          Length = 248

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRL--EIIQDD 103
              T  ++GAG G L+ +    GA +VI +EK+ +   +L+    +H P+ +  E++  D
Sbjct: 41  AEDTFADLGAGTGPLSVVAAHAGAERVIAVEKNPKRARLLEKNLRKHVPHDVEWEVVVGD 100

Query: 104 ALKVD 108
           A  VD
Sbjct: 101 ARDVD 105


>gi|54024104|ref|YP_118346.1| hypothetical protein nfa21360 [Nocardia farcinica IFM 10152]
 gi|54015612|dbj|BAD56982.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 255

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPI 85
           Q F +  ++L +I           ++++G GPG L+  LL       V+ ++ D      
Sbjct: 31  QRFEVIGDVLAEIVR----RPDPLIVDLGVGPGTLSDRLLVRFPEATVVGVDADPLLLA- 85

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           L + +   P R   +  D  + D+     +          P    +    +W++ +    
Sbjct: 86  LAERTLGSP-RFRTVDADLREPDWPARLEL-------DRAPDAFVSTTALHWMNREPLRA 137

Query: 146 FW 147
             
Sbjct: 138 LI 139


>gi|302870876|ref|YP_003839512.1| O-methyltransferase-like protein [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302573735|gb|ADL41526.1| O-methyltransferase-like protein [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 240

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 15/122 (12%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL----TLGARKVIVIEKDQQFF--PILKDISSQHP 94
           +         V+E   G GNL   +L        +K+  +E  ++     IL    +   
Sbjct: 32  DFIQLKKNDIVVEF--GTGNLIIPILLWAKGKKFKKLYALEIQKEVCDLAILNRNINNLQ 89

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT-----RLLFNWISADTWPPFWES 149
           +R+E+I  D LK D  K F       +  N PY   +       +   I+        E 
Sbjct: 90  DRIEVINAD-LK-DALKIFGSEFANVVFTNPPYRKVSSGTINPNIRKAIARHEIMCTIED 147

Query: 150 LT 151
           + 
Sbjct: 148 VV 149


>gi|298706546|emb|CBJ29516.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 225

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 65/201 (32%), Gaps = 31/201 (15%)

Query: 31  LDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
              ++  ++  ++    G ++  +V+++G G G L      LGA  V+ ++ D       
Sbjct: 33  TSAHLAARMVYTAEFEFGDIEDRSVLDLGCGTGMLGIAAGILGAGAVVGLDVDSGALSAA 92

Query: 87  KDISSQHPNRLEIIQDDALKVDF-EKFFNISSPIRIIANLPY-----NIGTRLLFNWISA 140
            + +      ++ +  D  +     + F+      ++ N P+      I    L   + A
Sbjct: 93  AENAESMEIGMDFVCCDVARNPCIPERFDT-----VLMNPPFGTRRAGIDVVFLERALEA 147

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                          K    +   +K       ++VL   R      FDI     F   +
Sbjct: 148 AP-------TVYSMHKTSTRKHLLKKAEEWGVDITVLAQLR------FDIPATYKFHKRR 194

Query: 201 ---VTSTVIHFIPHLNPIPCC 218
              V   +I     L+    C
Sbjct: 195 SMDVEVDLIRLQKRLSRSDSC 215


>gi|294340206|emb|CAZ88578.1| 3-demethylubiquinone-9 3-methyltransferase
           (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
           (DHHB methyltransferase) [Thiomonas sp. 3As]
          Length = 236

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-DQQF-FPILK 87
           LL+ + L+ I +  G   G  V++IG G G L++ +   GA KV  I+  D       L 
Sbjct: 35  LLNPHRLRWIQDHVGLG-GKAVVDIGCGGGILSESMAAAGA-KVTGIDLADASLQVARLH 92

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            + +Q      ++  + L  +    F++ + + ++ ++P
Sbjct: 93  ALDAQLDINYRLVSAERLATEAAGQFDVVTCMEMLEHVP 131


>gi|284117618|ref|ZP_06386745.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283829491|gb|EFC33856.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 220

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISS 91
             I+  + +         V+EIG G G  T +L  L A  V  +E         K  + +
Sbjct: 67  PYIVALMTDLLELTPTSKVLEIGTGCGYQTAILAEL-AGDVYSVEIISGLVKSAKVRLEA 125

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            +   + + + D      E   +      ++A  P ++  RL+   
Sbjct: 126 LNYRNIHLRKGDGYYGWRE---HAPYDAVLVAAAPMDVPERLIQQL 168


>gi|302531468|ref|ZP_07283810.1| predicted protein [Streptomyces sp. AA4]
 gi|302440363|gb|EFL12179.1| predicted protein [Streptomyces sp. AA4]
          Length = 226

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 8/157 (5%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +S   +G  V+EI  GPG     L   G   V  ++  + F  + K+ + +    ++  +
Sbjct: 46  ASELAEGADVLEIAPGPGFFAVELARTGRCAVTGLDVSRTFVQLAKEYAREQGVEVDFRR 105

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRL-LFNWISADTWPPFWESLTLLFQKEVGE 160
            D   +    F + S    I      N    +   + +     P     +  L +     
Sbjct: 106 GDVAAM---PFADGSFDFLICQAAFKNFADPVDALDEMHRVLRPGGVALVQDLNKSTTDA 162

Query: 161 RITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           ++ A+      G         T    +  +    + P
Sbjct: 163 QLDAEVARMDLGP----VAAFTTVRTLRGLRRRAYTP 195


>gi|163852522|ref|YP_001640565.1| methyltransferase small [Methylobacterium extorquens PA1]
 gi|163664127|gb|ABY31494.1| methyltransferase small [Methylobacterium extorquens PA1]
          Length = 250

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH--PNR 96
           A       G T+ ++GA  G +   +  L  A +V+++E+D     + ++ +S +    R
Sbjct: 33  ARLLAPAPGATLYDLGAATGAVGLAVARLSEAGRVVLVERDTDLVALARENASANGLDGR 92

Query: 97  LEIIQDDAL 105
           + +I+ D L
Sbjct: 93  VAVIEADLL 101


>gi|149913718|ref|ZP_01902250.1| putative methyltransferase [Roseobacter sp. AzwK-3b]
 gi|149812002|gb|EDM71833.1| putative methyltransferase [Roseobacter sp. AzwK-3b]
          Length = 232

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 11/150 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I++ +    G L G  V+++G G G L    L LGA  V+  + D     +  D  ++  
Sbjct: 21  IVRHLMRHPGLLHGRQVLDLGTGSGILAGTALQLGAAGVVATDLDHDALHLADDRLARIA 80

Query: 95  NR--LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
               +++ Q       +E   + +    ++ANLP           + + T   FW     
Sbjct: 81  PEASVQLCQG----AMWEAVASDARFDLVLANLPN-----FPARQLESGTRAAFWSVGGA 131

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTGWRT 182
             +K +   +         G  +V T  R 
Sbjct: 132 DGRKVLDPFLLGLPRRLRQGASAVFTQNRC 161


>gi|147811090|emb|CAN67923.1| hypothetical protein VITISV_041951 [Vitis vinifera]
          Length = 360

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRL 97
            +      G  ++++G G G   + +       V+ I  ++       L +  +   +  
Sbjct: 116 VDLIDVKXGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNRKAGLDSLC 175

Query: 98  EIIQDDALKVDFEK-FFNISSPIRIIANLP 126
           E++  + L++ F    F+ +  I    + P
Sbjct: 176 EVVCGNFLQMPFADNSFDGAYSIEATCHAP 205


>gi|116514458|ref|YP_813364.1| tRNA (guanine-N(7)-)-methyltransferase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122274810|sp|Q049E6|TRMB_LACDB RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|116093773|gb|ABJ58926.1| tRNA (guanine-N(7)-)-methyltransferase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 218

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 12/107 (11%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV-IEIGAGPG 59
           M + NK  +   ++  +            L   N  +KI  ++   +   + IE+G+G G
Sbjct: 1   MRLKNKPWA-NELVEEHPESA--------LDRPNPAEKIDWAARFGNDKPIEIEVGSGKG 51

Query: 60  N-LTQMLLTLGARKVIVIEKDQQFFPI-LKDISSQHPNRLEIIQDDA 104
             +T +      R  + +E  +    I LK    +  + L+I+  DA
Sbjct: 52  QFITTLAKQHPDRNFVAMEIQKTAAGIILKKKLDEGLDNLQILCADA 98


>gi|115377216|ref|ZP_01464428.1| protein-L-isoaspartate O-methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821201|ref|YP_003953559.1| protein-l-isoaspartate o-methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365799|gb|EAU64822.1| protein-L-isoaspartate O-methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394273|gb|ADO71732.1| Protein-L-isoaspartate O-methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 211

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  ++++ G      V+EIG G G  T +L  L  R+V  +E      P L   +S 
Sbjct: 58  PYIVALMSQALGLQGSERVLEIGTGSGYQTAVLAQLC-REVYSVEI----VPALARSAST 112

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII--ANLPYNIGTRLLFNW 137
               L        +VD  + +  ++P  +I     P  +  RLL   
Sbjct: 113 LLKELGFQNVFLREVDGAQGWPEAAPFDVIIGTAAPEAVPPRLLAQL 159


>gi|39995656|ref|NP_951607.1| hypothetical protein GSU0549 [Geobacter sulfurreducens PCA]
 gi|39982419|gb|AAR33880.1| conserved domain protein [Geobacter sulfurreducens PCA]
          Length = 226

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
          ++ I        G  V+E+G G G +T+ L    AR V+ ++ D++
Sbjct: 10 IRTITSHCDLR-GAEVLEVGCGAGRITRDLARHAAR-VVAVDPDER 53


>gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016]
 gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           MO6-24/O]
 gi|46396771|sp|Q7MGK4|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016]
 gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           MO6-24/O]
          Length = 426

 Score = 37.5 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                 DG  +++  A PG  T  +L    AR+V+ ++ D+Q    + +   +   + ++
Sbjct: 237 NYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKV 296

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL--FQKE 157
           I  DA   + E+++      RI+ + P +    +  +      W    E +T L   Q E
Sbjct: 297 ICGDA--RNPEQWWQGEQFDRILLDAPCSATGVIRRH--PDIKWLRRAEDITALAQLQSE 352

Query: 158 VGERITAQ 165
           + + + AQ
Sbjct: 353 IFDAMWAQ 360


>gi|313680136|ref|YP_004057875.1| tRNA (adenine-58-n(1)-) methyltransferase [Oceanithermus profundus
           DSM 14977]
 gi|313152851|gb|ADR36702.1| tRNA (adenine-58-N(1)-) methyltransferase [Oceanithermus profundus
           DSM 14977]
          Length = 277

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 9/125 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
              I        G  V+E G+G G L   L        +V+  E+   F    ++     
Sbjct: 83  AAAIVLMLDLAPGERVLEAGSGSGALALFLARAVGPEGEVVSYERRADFLARARENVEAW 142

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIA---NLPYNIGTRLLFNWISADTWPPFWESL 150
                +   D    D  +          +A     P+ + +  +    +  +   +  ++
Sbjct: 143 G----VRNVDFRHGDLAEAALEPEGFDGVALDVMEPWKVLSTAVRALKTGRSLVLYLPNI 198

Query: 151 TLLFQ 155
           T + Q
Sbjct: 199 TQVVQ 203


>gi|310639707|ref|YP_003944465.1| protein yxbb [Paenibacillus polymyxa SC2]
 gi|309244657|gb|ADO54224.1| Uncharacterized protein yxbB [Paenibacillus polymyxa SC2]
          Length = 234

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
             G  VI++G GPG LT  L       V  ++ +     + + +  +     + +  D +
Sbjct: 35  RKGGVVIDMGTGPGYLTVELAERLKANVHAVDINPAMHDLARRLVEERGLS-KSVHFDVI 93

Query: 106 KVDFEKFFNISSPIRIIANL 125
            V  + + +  + + +  + 
Sbjct: 94  DVHNQIYPDNYADLVVSYSC 113


>gi|304405030|ref|ZP_07386690.1| Methyltransferase type 12 [Paenibacillus curdlanolyticus YK9]
 gi|304345909|gb|EFM11743.1| Methyltransferase type 12 [Paenibacillus curdlanolyticus YK9]
          Length = 299

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 51  VIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDISSQHPNRLEIIQDDA 104
           ++EIG G G LT  L      + ++  ++            L        +R+  ++ +A
Sbjct: 56  ILEIGCGTGALTLQLAQQLPPSCRITAVDLAPGMLEAARGKLNKRCPHTLDRVRFVEANA 115


>gi|302758236|ref|XP_002962541.1| hypothetical protein SELMODRAFT_404402 [Selaginella moellendorffii]
 gi|300169402|gb|EFJ36004.1| hypothetical protein SELMODRAFT_404402 [Selaginella moellendorffii]
          Length = 309

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 3/117 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPNRLEI 99
                G  V+E G G G+LT  L    A    V   D    +     KD  +   N + +
Sbjct: 97  LELRPGCVVLESGTGSGSLTTSLARAVAPSGHVHTFDFHEPRASLARKDFENNRINNVTV 156

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
              D     F +     +    +      +    +   +  +     +       Q+
Sbjct: 157 GVRDIQGQGFPEELTDKANAVFLDLPQPWLAVESVLICLRPNASCCSFSPCIEQVQR 213


>gi|296474810|gb|DAA16925.1| HemK methyltransferase family member 1 [Bos taurus]
          Length = 321

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRL 97
              G+  G  ++E+G G G ++  LL+   + +V  ++K +    +  + +   +   R+
Sbjct: 146 RVVGAEGGPLILEVGCGSGAISLSLLSRLPQSRVTAVDKGEAAICLTHENAQRLRLQARI 205

Query: 98  EIIQDDA-LKVDFEKFFNISSPIRIIANLPY 127
           +I+  D  L   +           +++N PY
Sbjct: 206 QIVTFDVTLVESWAHLLPWGPVDLVVSNPPY 236


>gi|293606028|ref|ZP_06688393.1| cyclopropane-fatty-acyl-phospholipid synthase [Achromobacter
           piechaudii ATCC 43553]
 gi|292815483|gb|EFF74599.1| cyclopropane-fatty-acyl-phospholipid synthase [Achromobacter
           piechaudii ATCC 43553]
          Length = 400

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I        G T+++IG G G L +         V  +   ++   + ++     P 
Sbjct: 168 LDMICRKLQLKPGETLLDIGCGWGGLAKFAAENYGVSVTGVTVSKEQLALAQERVKGLP- 226

Query: 96  RLEIIQDD 103
            ++++  D
Sbjct: 227 -VQLLLQD 233


>gi|229505717|ref|ZP_04395227.1| predicted O-methyltransferase [Vibrio cholerae BX 330286]
 gi|229357940|gb|EEO22857.1| predicted O-methyltransferase [Vibrio cholerae BX 330286]
          Length = 240

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ--FFPILKDISSQHPNRLEIIQDDALK 106
           T+++IG G G L+ M         +  ++ +Q            S    R+E    D L 
Sbjct: 45  TILDIGCGTGLLSLMCAQRFPHAHITALDIEQTAYLAAEHNRQQSPWAERIECQHADILH 104

Query: 107 VDFEKFFNISSPIRIIANLPYNIG 130
               K F       II N PY   
Sbjct: 105 WQPSKRF-----AAIICNPPYFNS 123


>gi|213965410|ref|ZP_03393606.1| tRNA (guanine-N(7)-)-methyltransferase
           (tRNA(m7G46)-methyltransferase) [Corynebacterium
           amycolatum SK46]
 gi|213952026|gb|EEB63412.1| tRNA (guanine-N(7)-)-methyltransferase
           (tRNA(m7G46)-methyltransferase) [Corynebacterium
           amycolatum SK46]
          Length = 282

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
             G T++EIG G G  T  +        +I +E        +L        + + +++ D
Sbjct: 104 RKGPTIVEIGCGTGTSTVAMAPQEPDHNIIAVELYRPGLAKLLSATVRNEVSNIRMVRGD 163

Query: 104 ALKV 107
            ++V
Sbjct: 164 GVEV 167


>gi|190574316|ref|YP_001972161.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Stenotrophomonas maltophilia K279a]
 gi|190012238|emb|CAQ45861.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Stenotrophomonas maltophilia K279a]
          Length = 419

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQH 93
           L +I +      G  V+EIG G G             V    I  +Q      +   +  
Sbjct: 179 LDRICQQLQLKPGDRVVEIGTGWGGFAVHAARHYGCHVTTTTISAEQHALAARRVREAGL 238

Query: 94  PNRLEIIQDD 103
            +++ ++  D
Sbjct: 239 QDQVTLLMQD 248


>gi|126740439|ref|ZP_01756127.1| methyltransferase, FkbM family protein [Roseobacter sp.
          SK209-2-6]
 gi|126718575|gb|EBA15289.1| methyltransferase, FkbM family protein [Roseobacter sp.
          SK209-2-6]
          Length = 214

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
          + IA       G  V+E+G G G + T +     A  V   E +    P ++++ + +
Sbjct: 27 EAIAALKLIKAGDVVLELGGGIGFMSTLVGTKTPAASVHSFEANPNLVPYIQEVHAAN 84


>gi|27379583|ref|NP_771112.1| protein-L-isoaspartate O-methyltransferase [Bradyrhizobium
           japonicum USDA 110]
 gi|27352735|dbj|BAC49737.1| protein-L-isoaspartate O-methyltransferase [Bradyrhizobium
           japonicum USDA 110]
          Length = 240

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           G+ FL+   +  K+ +++   +G  V+ +G   G L   L    A +V   E D      
Sbjct: 80  GKRFLIKPQLTGKLLQAAEIGEGDNVLVVGCATGYL-AALAAKLAGRVTATECDSALVAK 138

Query: 86  LKDISSQ 92
            KD  + 
Sbjct: 139 AKDAFAA 145


>gi|85707758|ref|ZP_01038824.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1]
 gi|85689292|gb|EAQ29295.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1]
          Length = 313

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++  +      + +I+   G G  ++ LL  GAR V   ++D       + + ++
Sbjct: 7   PVLLDEVVAAIQPSPDMAIIDATFGAGGYSRALLEKGAR-VYAFDRDPNAIRDGQGMVAE 65

Query: 93  HPNRLEII 100
              RL + 
Sbjct: 66  FDGRLSLH 73


>gi|146278015|ref|YP_001168174.1| protein-L-isoaspartate O-methyltransferase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|209573233|sp|A4WU05|PIMT_RHOS5 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|145556256|gb|ABP70869.1| protein-L-isoaspartate O-methyltransferase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 219

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  ++++        V+EIG G G     +L+  AR+V  +++ ++      ++   
Sbjct: 69  PSVVGLMSQALAINPRDKVLEIGTGSGY-QAAILSQLARRVYTVDRHRRLVREATELF-- 125

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             +RL +    AL  D        +P   I
Sbjct: 126 --HRLGLTNITALAADGSFGLPEQAPFDRI 153


>gi|327472985|gb|EGF18412.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK408]
          Length = 318

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P+   + +   
Sbjct: 170 LRGGETVLDVGTGSGVLSIASSLLGAKDIYAYDLDEVAVRVAQENIELNPDMENIHVAPG 229

Query: 103 DALK 106
           D L+
Sbjct: 230 DLLR 233


>gi|317485485|ref|ZP_07944362.1| hypothetical protein HMPREF0179_01715 [Bilophila wadsworthia 3_1_6]
 gi|316923165|gb|EFV44374.1| hypothetical protein HMPREF0179_01715 [Bilophila wadsworthia 3_1_6]
          Length = 2870

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 35   ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            + +++  ++    G+ V+E  AG G++   +   G   V+      +  P  +++     
Sbjct: 1340 VTEEMLAAADIRPGMGVLEPSAGMGHIADRIREKGVEPVVA-----ELEPQKRELLEAKG 1394

Query: 95   NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
               E+I  D +K          S  RI+ N P++
Sbjct: 1395 --YEVIGKDFMK----DIPEGESFDRIVMNPPFS 1422


>gi|317473411|ref|ZP_07932705.1| methyltransferase type 11 [Anaerostipes sp. 3_2_56FAA]
 gi|316899061|gb|EFV21081.1| methyltransferase type 11 [Anaerostipes sp. 3_2_56FAA]
          Length = 240

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 14  LSHYKIIPKKY---MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           +  Y+II KK     G    +D  +L    +         V+++G G G L  +L+    
Sbjct: 6   IKGYQIIQKKDGFCFG----MDAVLLSSFVK---VKKNGNVLDLGTGTGIL-PILMEAKT 57

Query: 71  --RKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             R    +E   +   +    ++      ++EI++ D  K      F+  S   I +N P
Sbjct: 58  PGRHFTGLEIQSEMAEMAARSAALNGLEEKIEIVEGDITKA--SAIFSHDSFDVITSNPP 115

Query: 127 YNI 129
           Y +
Sbjct: 116 YMV 118


>gi|285808427|gb|ADC35953.1| UbiE/COQ5 methyltransferase [uncultured bacterium 98]
          Length = 259

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 8/134 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILK-DISSQHPNRLEIIQD 102
              G  V+++G G G +T+ LL      + I I++        +  + +     +  +Q 
Sbjct: 29  LSGGELVLDVGCGTGRITERLLERLPDGRAIAIDQSANMIDAARGYLGTGFAGHVAFVQA 88

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ---KEVG 159
           DA  +    F + +  I   A   +      LF  + A   P              + + 
Sbjct: 89  DAAAL---PFASKADAILSTATFHWIRDHDRLFASLGAALKPGGRLVAQCGGAGNLERIH 145

Query: 160 ERITAQKNSPHYGR 173
           ER  A      Y R
Sbjct: 146 ERCRALIGRAPYSR 159


>gi|242247319|ref|NP_001156225.1| protein arginine n-methyltransferase 1, putative [Acyrthosiphon
           pisum]
 gi|239790933|dbj|BAH71996.1| ACYPI006777 [Acyrthosiphon pisum]
          Length = 380

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
             L G  V++IG G G L+      GA KVI +E         K I + +   + + II+
Sbjct: 92  HLLKGKIVLDIGCGTGILSMFAAKAGAAKVIGVEC-SNIVEYAKQIVADNHLDHIVTIIK 150

Query: 102 DDALKVDFEK 111
               ++D   
Sbjct: 151 GKVEEIDLPD 160


>gi|170051353|ref|XP_001861725.1| 3-demethylubiquinone-9 3-methyltransferase [Culex quinquefasciatus]
 gi|167872662|gb|EDS36045.1| 3-demethylubiquinone-9 3-methyltransferase [Culex quinquefasciatus]
          Length = 287

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            +   L G+ V+E+G G G LT+ L  + A  V+ I+  ++   + ++ + 
Sbjct: 91  RTPQVLSGLNVLEVGCGGGILTEALARIRAN-VVGIDPGEKLIQVAREHAE 140


>gi|156060435|ref|XP_001596140.1| hypothetical protein SS1G_02356 [Sclerotinia sclerotiorum 1980]
 gi|154699764|gb|EDN99502.1| hypothetical protein SS1G_02356 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 2437

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 14/85 (16%)

Query: 28   NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI--------EKD 79
            +F    ++L  I           ++E+GAG G  TQ L+++ A + +          + D
Sbjct: 1315 HF---GSLLDAIV---HKNPDGRILEVGAGTGAATQNLMSILALEDMPARFSVFDYTDVD 1368

Query: 80   QQFFPILKDISSQHPNRLEIIQDDA 104
              F    ++       ++   + D 
Sbjct: 1369 SSFLTAAQEKYQHFGAKMRFRKLDI 1393


>gi|148555785|ref|YP_001263367.1| type 12 methyltransferase [Sphingomonas wittichii RW1]
 gi|148500975|gb|ABQ69229.1| Methyltransferase type 12 [Sphingomonas wittichii RW1]
          Length = 240

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 61/206 (29%), Gaps = 35/206 (16%)

Query: 29  FLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-- 85
           F+    I+  + E      G   ++E+GAG G+   +L   GA   I  + D + F    
Sbjct: 19  FVARRRIIASLIERHRPKPGPMRILEVGAGTGSNLALLQRYGAVDAIEPDDDARAFAEQR 78

Query: 86  --LKDISSQHP---------------NRLEIIQDD--ALKVDFEKFFNISSPIRIIANLP 126
             LK      P               + LE I  D  AL    +K       +  +   P
Sbjct: 79  SGLKIKGGYLPDVPLDDGAYDLIVLLDVLEHIPGDVEALACLKDKLAPGGRILVTVPGAP 138

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATM 186
           +         W + D         T    + V  +   +     +   SVL        +
Sbjct: 139 WM--------WSAHDVAHHHQRRYTGAQLRAVFGQAGLKPRFMSH-FNSVLFPLIAAVRL 189

Query: 187 MFDI----SPHVFFPSPKVTSTVIHF 208
           +  I          PS  V + +   
Sbjct: 190 LGKITGKEGGDDAMPSKPVNAALTTL 215


>gi|27754675|gb|AAO22781.1| putative arginine methyltransferase [Arabidopsis thaliana]
          Length = 435

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
           G  V+++GAG G L+      GA+ V  +E   +     + + + +P    R+ +I+ 
Sbjct: 94  GRVVVDVGAGSGILSMFAALAGAKHVYAVEA-SEMAEYARKLIAGNPLLAERITVIKG 150


>gi|75906726|ref|YP_321022.1| hypothetical protein Ava_0503 [Anabaena variabilis ATCC 29413]
 gi|75700451|gb|ABA20127.1| hypothetical protein Ava_0503 [Anabaena variabilis ATCC 29413]
          Length = 278

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E +       ++E+G GPG  T     LG   ++ +E  Q    + +   S 
Sbjct: 43  QQLVSRVVELAQLPQNAAILEVGCGPGTATTAFAQLG-FSMVCLEPSQNSSQLAQQNCSP 101

Query: 93  HPNRLEIIQ 101
           +PN +EII 
Sbjct: 102 YPN-VEIIN 109


>gi|42573634|ref|NP_974913.1| PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A); [myelin basic
           protein]-arginine N-methyltransferase/ histone-arginine
           N-methyltransferase/ methyltransferase/ protein
           heterodimerization/ protein homodimerization/
           protein-arginine omega-N asymmetric methyltransferase/
           protein-arginine omega-N monomethyltransferase
           [Arabidopsis thaliana]
 gi|332008377|gb|AED95760.1| histone-arginine methyltransferase CARM1 [Arabidopsis thaliana]
          Length = 526

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
           G  V+++GAG G L+      GA+ V  +E   +     + + + +P    R+ +I+ 
Sbjct: 185 GRVVVDVGAGSGILSMFAALAGAKHVYAVEA-SEMAEYARKLIAGNPLLAERITVIKG 241


>gi|30695591|ref|NP_199713.2| PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A); [myelin basic
           protein]-arginine N-methyltransferase/ histone-arginine
           N-methyltransferase/ methyltransferase/ protein
           heterodimerization/ protein homodimerization/
           protein-arginine omega-N asymmetric methyltransferase/
           protein-arginine omega-N monomethyltransferase
           [Arabidopsis thaliana]
 gi|152013379|sp|A3KPF2|ANM14_ARATH RecName: Full=Probable histone-arginine methyltransferase 1.4;
           Short=AtPRMT14; AltName: Full=Coactivator-associated
           methyltransferase 1B; AltName: Full=Protein arginine
           N-methyltransferase 4A; Short=AtPRMT4A
 gi|126352276|gb|ABO09883.1| At5g49020 [Arabidopsis thaliana]
 gi|126352282|gb|ABO09886.1| At5g49020 [Arabidopsis thaliana]
 gi|332008378|gb|AED95761.1| histone-arginine methyltransferase CARM1 [Arabidopsis thaliana]
          Length = 528

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
           G  V+++GAG G L+      GA+ V  +E   +     + + + +P    R+ +I+ 
Sbjct: 187 GRVVVDVGAGSGILSMFAALAGAKHVYAVEA-SEMAEYARKLIAGNPLLAERITVIKG 243


>gi|20089604|ref|NP_615679.1| hypothetical protein MA0719 [Methanosarcina acetivorans C2A]
 gi|19914523|gb|AAM04159.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 197

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
             +V ++G G G L      LGARKV+  + D +   + +  + +    +E +  D  KV
Sbjct: 47  DESVQDLGCGTGILAIGAKLLGARKVVGYDTDPKALEVARKNAERLGVEVEFVCSDIKKV 106


>gi|15922132|ref|NP_377801.1| cobalt-precorrin-6Y C(15)-methyltransferase [Sulfolobus tokodaii
           str. 7]
 gi|48428136|sp|Q96ZL5|CBIT_SULTO RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|15622920|dbj|BAB66910.1| 192aa long hypothetical precorrin-8W decarboxylase [Sulfolobus
           tokodaii str. 7]
          Length = 192

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLT-QMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEI 99
           +   DG   I+IG+G G++T +  L +G + KV  IEKD+    + K    +   N + I
Sbjct: 32  ARLFDGAKFIDIGSGTGSVTVEAGLVVGEKGKVWAIEKDKDAVELTKKNVEKFKLNNVVI 91

Query: 100 IQDDA 104
           I+ +A
Sbjct: 92  IEGEA 96


>gi|10177192|dbj|BAB10326.1| arginine methyltransferase-like protein [Arabidopsis thaliana]
          Length = 577

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
           G  V+++GAG G L+      GA+ V  +E   +     + + + +P    R+ +I+ 
Sbjct: 187 GRVVVDVGAGSGILSMFAALAGAKHVYAVEA-SEMAEYARKLIAGNPLLAERITVIKG 243


>gi|146278503|ref|YP_001168662.1| methyltransferase small [Rhodobacter sphaeroides ATCC 17025]
 gi|145556744|gb|ABP71357.1| methyltransferase small [Rhodobacter sphaeroides ATCC 17025]
          Length = 271

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           A +  +  G +V+E+G G G  +  L       ++  +E    +  + +  ++++   LE
Sbjct: 54  AAAVPARPGQSVLELGCGAGVASLCLAARVPGLRLAGLEVQPAYAELARVNAARNGVSLE 113

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +++ D L               +IAN PY 
Sbjct: 114 VVEGD-LAAMPPVLRRSFD--HVIANPPYY 140


>gi|116625165|ref|YP_827321.1| type 11 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228327|gb|ABJ87036.1| Methyltransferase type 11 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 404

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEK-DQQFFPILKDISSQ 92
           + +I +++G   G  V ++GAG G LT  +  +      V  ++  D +    LK+ + +
Sbjct: 33  VDEIFKAAGIGAGSIVADVGAGDGFLTLRIAPIVGQTGHVFAVDIADIKL-QRLKERAEE 91

Query: 93  -HPNRLEIIQD 102
            H   +EI++ 
Sbjct: 92  AHFGNIEIVKG 102



 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +++  S     G    ++G G G  T    L    A KV+ ++ D+     LK   ++  
Sbjct: 221 RRVVASLHLRSGAEAADVGCGDGFYTLPMALAVGPAGKVLAVDIDESSPSKLKQHLTEGG 280

Query: 95  NR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNI-GTRLLFNWISADTWP 144
            R +E++       D  +       + ++AN  + +     +   I A   P
Sbjct: 281 VRNVELVHG---AEDDPRLPPARLDVVLVANAYHEMQAHEAMLRGIRAGLKP 329


>gi|322370966|ref|ZP_08045519.1| Methyltransferase type 12 [Haladaptatus paucihalophilus DX253]
 gi|320549401|gb|EFW91062.1| Methyltransferase type 12 [Haladaptatus paucihalophilus DX253]
          Length = 202

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           +      G  V+E+G+GPG+           +  V  +E++      L+    +     +
Sbjct: 33  DEISLETGDVVVEVGSGPGHTALRTAQRVGPSGTVYAVERNGDALRYLQRTMGKTDVGNV 92

Query: 98  EIIQDDA 104
           E I  DA
Sbjct: 93  EPIHADA 99


>gi|293609472|ref|ZP_06691774.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827924|gb|EFF86287.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122735|gb|ADY82258.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 301

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 11/138 (7%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
               VI+ G G G L    L LGA+KV   + D Q     K  +  +     +     L 
Sbjct: 159 KDKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVLATKQNAELNGVLDRLYVG--LP 216

Query: 107 VDFEKFFNISSPIRIIANL---PYNIGTRLLFNWISAD---TWPPFWESLTLLFQK---E 157
            +F++ F       ++AN+   P  +      N I ++         E       +   E
Sbjct: 217 EEFDQEFKPKQADVLVANILAGPLMMLAPEFANLIKSEGEFALAGVIEEQVADVSRVYSE 276

Query: 158 VGERITAQKNSPHYGRLS 175
             + +  +K   ++ R+S
Sbjct: 277 FFDILDVEKREENWCRIS 294


>gi|269959613|ref|ZP_06173994.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835671|gb|EEZ89749.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 239

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +       +++IG G G L  M        ++  ++ +       +   +Q P  +RL +
Sbjct: 38  ANCSPQSKILDIGTGTGLLALMCAQRFPNAQITALDIEISAIEAAQKNFTQSPWSDRLWV 97

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
              D L+ + E+ F       II N PY   
Sbjct: 98  RHTDVLQFESEQRFE-----HIICNPPYFNS 123


>gi|261210103|ref|ZP_05924401.1| protein-L-isoaspartate O-methyltransferase [Vibrio sp. RC341]
 gi|260840868|gb|EEX67410.1| protein-L-isoaspartate O-methyltransferase [Vibrio sp. RC341]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYIVARMTELLDLTPETKVLEIGTGSGYQTAVLAKL-VNHVFTVER----IKTLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D  + ++  +P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWQGWSARAPFDAI 145


>gi|268315775|ref|YP_003289494.1| hypothetical protein Rmar_0200 [Rhodothermus marinus DSM 4252]
 gi|262333309|gb|ACY47106.1| hypothetical protein Rmar_0200 [Rhodothermus marinus DSM 4252]
          Length = 763

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 186 MMFDISPHVFF-----PSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTL 237
           ++F +           P P+  S ++H    LN  P   ++L+         RRK L
Sbjct: 10  LLFCVPALAQHLQPLSPRPEPDSYILHVTDRLNRRPEARQALEDF------HRRKAL 60


>gi|226357299|ref|YP_002787039.1| NUDIX hydrolase/O-methyltransferase domains protein [Deinococcus
           deserti VCD115]
 gi|226319289|gb|ACO47285.1| putative NUDIX hydrolase/O-methyltransferase domains protein
           [Deinococcus deserti VCD115]
          Length = 319

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           + S     ++E+G G G  +  LL     + +++ +E D     ++     QH +R E++
Sbjct: 167 ATSRPAGRLLELGTGLGAGSAWLLAGMDPSARLLTVENDPDRA-LMATRLLQHDSRAEVL 225

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             D          +    +      P       L   + A
Sbjct: 226 HGD----WTGALAHGPFDLIFADCAPAKGEAAQLDRLLEA 261


>gi|254393891|ref|ZP_05008995.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294813194|ref|ZP_06771837.1| Putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326441694|ref|ZP_08216428.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197707482|gb|EDY53294.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294325793|gb|EFG07436.1| Putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 277

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +   L G   +++GAG G  T+ LL  GAR V+ +E        L+      P  L    
Sbjct: 56  AGRPLGGADTVDVGAGTGIATRSLLARGAR-VVAVEPGAGMADRLRRTLPAVP--LLRAD 112

Query: 102 DDAL 105
            DAL
Sbjct: 113 GDAL 116


>gi|77404782|ref|YP_345354.1| N6 adenine-specific DNA methyltransferase, N12 class [Rhodobacter
           sphaeroides 2.4.1]
 gi|77390432|gb|ABA81613.1| N6 adenine-specific DNA methyltransferase, N12 class [Rhodobacter
           sphaeroides 2.4.1]
          Length = 481

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 8/134 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G+ V+E  AG G L   LL  G   V  +E        L+   +     L +   + 
Sbjct: 323 LKPGMKVLEPSAGIGGLVWPLLERGCL-VDAVEIHPDRAAALEGRCAPG---LTVRCANF 378

Query: 105 LKVDFEKFFNI---SSPIRIIANLPYNI-GTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
           L +   + ++    + P      + + +     L          P    +    + E   
Sbjct: 379 LGLQPREDYHAVVMNPPFAGTHWMDHVMQAWAFLKPGGQLAAILPASAEVNETPRHERFR 438

Query: 161 RITAQKNSPHYGRL 174
               +++   + RL
Sbjct: 439 DWARREHRDRWSRL 452


>gi|15640681|ref|NP_230310.1| hypothetical protein VC0661 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587873|ref|ZP_01677630.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153818696|ref|ZP_01971363.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822285|ref|ZP_01974952.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227080842|ref|YP_002809393.1| hypothetical protein VCM66_0619 [Vibrio cholerae M66-2]
 gi|229508709|ref|ZP_04398202.1| predicted O-methyltransferase [Vibrio cholerae B33]
 gi|229519542|ref|ZP_04408985.1| predicted O-methyltransferase [Vibrio cholerae RC9]
 gi|229608736|ref|YP_002879384.1| predicted O-methyltransferase [Vibrio cholerae MJ-1236]
 gi|254850992|ref|ZP_05240342.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255743879|ref|ZP_05417835.1| predicted O-methyltransferase [Vibrio cholera CIRS 101]
 gi|262156098|ref|ZP_06029217.1| predicted O-methyltransferase [Vibrio cholerae INDRE 91/1]
 gi|298500777|ref|ZP_07010580.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|81858152|sp|Q9KU62|TRMN6_VIBCH RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|262828776|sp|C3LSR6|TRMN6_VIBCM RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|9655099|gb|AAF93827.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547909|gb|EAX57993.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126510776|gb|EAZ73370.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126520181|gb|EAZ77404.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227008730|gb|ACP04942.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229344231|gb|EEO09206.1| predicted O-methyltransferase [Vibrio cholerae RC9]
 gi|229354233|gb|EEO19163.1| predicted O-methyltransferase [Vibrio cholerae B33]
 gi|229371391|gb|ACQ61814.1| predicted O-methyltransferase [Vibrio cholerae MJ-1236]
 gi|254846697|gb|EET25111.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255738510|gb|EET93899.1| predicted O-methyltransferase [Vibrio cholera CIRS 101]
 gi|262030134|gb|EEY48779.1| predicted O-methyltransferase [Vibrio cholerae INDRE 91/1]
 gi|297540558|gb|EFH76616.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 240

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ--FFPILKDISSQHPNRLEIIQDDALK 106
           T+++IG G G L+ M         +  ++ +Q            S    R+E    D L 
Sbjct: 45  TILDIGCGTGLLSLMCAQRFPHAHITALDIEQTAYLAAEHNRQQSPWAERIECQHADILH 104

Query: 107 VDFEKFFNISSPIRIIANLPYNIG 130
               K F       II N PY   
Sbjct: 105 WQPSKRF-----AAIICNPPYFNS 123


>gi|319939392|ref|ZP_08013752.1| methyltransferase small domain superfamily protein [Streptococcus
           anginosus 1_2_62CV]
 gi|319811378|gb|EFW07673.1| methyltransferase small domain superfamily protein [Streptococcus
           anginosus 1_2_62CV]
          Length = 196

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 5/160 (3%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L+   + K+I +         +++ G G G +T  L       ++V   D+        +
Sbjct: 23  LIRQEVEKQIVD----FSDKRILDFGGGTGLVTLPLAAQSKLVMLVDISDKMLDQARLKV 78

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWE 148
             Q  + + ++Q D L     + F+I    R++ ++P    T  +F   +  D      +
Sbjct: 79  EKQAIDNVYLLQQDLLTNPLNQLFDIIVVSRVLHHMPNVEKTLAMFRNHLVEDGQLFIAD 138

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
            +              ++N    G L V +     A  +F
Sbjct: 139 FVKTDVNHHGFHLDELEENLSQNGFLPVKSQIIYSAEELF 178


>gi|296087849|emb|CBI35105.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           + I  +   + G TV+++G G G L+      GA +VI +E  ++   +   ++  +
Sbjct: 257 QAILNNPSLMKGATVLDVGCGTGILSLFAAQAGASRVIAVEASEKMASVATQVAKDN 313


>gi|242398179|ref|YP_002993603.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Thermococcus sibiricus MM 739]
 gi|242264572|gb|ACS89254.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Thermococcus sibiricus MM 739]
          Length = 245

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  + E     +G  ++++G G G  +  L   G R V  ++  Q+     ++ + +   
Sbjct: 30  IDFLLEEFKLPEGAKILDVGCGVGRHSLELAKRGYR-VTGVDISQKMLEKAEERAQKEGV 88

Query: 96  RLEIIQDDALKVDFEKFFN 114
            +E I+ DA K    + F+
Sbjct: 89  EVEFIKADATKFARNEKFD 107


>gi|228934088|ref|ZP_04096929.1| hypothetical protein bthur0009_25480 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825602|gb|EEM71394.1| hypothetical protein bthur0009_25480 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 247

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
              T++E+GAG G   + +  L  +   V     +  P L   + +H  N + I   D  
Sbjct: 41  PFQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPELVMFAKEHSTNDIVIHCADFY 95

Query: 106 KVDFEKFFNI 115
           K++FE+ F++
Sbjct: 96  KINFEEKFDV 105


>gi|229062010|ref|ZP_04199336.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH603]
 gi|228717319|gb|EEL68992.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH603]
          Length = 312

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G TVI++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTVIDVGTGSGVLSIAAAKLGAASVQAYDLDPVAVE 212


>gi|229169060|ref|ZP_04296776.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH621]
 gi|228614469|gb|EEK71578.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH621]
          Length = 312

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G TVI++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTVIDVGTGSGVLSIAAAKLGAASVQAYDLDPVAVE 212


>gi|225465813|ref|XP_002263954.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 629

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           + I  +   + G TV+++G G G L+      GA +VI +E  ++   +   ++  +
Sbjct: 283 QAILNNPSLMKGATVLDVGCGTGILSLFAAQAGASRVIAVEASEKMASVATQVAKDN 339


>gi|196032452|ref|ZP_03099866.1| putative methyltransferase [Bacillus cereus W]
 gi|195995203|gb|EDX59157.1| putative methyltransferase [Bacillus cereus W]
          Length = 247

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
              T++E+GAG G   + +  L  +   V     +  P L   + +H  N + I   D  
Sbjct: 41  PFQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPELVMFAKEHSTNDIVIHCADFY 95

Query: 106 KVDFEKFFNI 115
           K++FE+ F++
Sbjct: 96  KINFEEKFDV 105


>gi|169235286|ref|YP_001688486.1| S-adenosylmethionine-dependent methyltransferase [Halobacterium
           salinarum R1]
 gi|167726352|emb|CAP13133.1| homolog to S-adenosylmethionine-dependent methyltransferase
           [Halobacterium salinarum R1]
          Length = 234

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-- 88
           +D    + + ++ G +DG  V+EI  G G  T ML   GA  +  ++      P+L++  
Sbjct: 28  IDRREKRAVLDALGRVDGDRVLEIACGTGRFTVMLAERGAD-ITGLDI---SGPMLQEGR 83

Query: 89  ---ISSQHPNRLEIIQDDALKVDFEK 111
                +   + +E ++ DA ++ F  
Sbjct: 84  QKAAQAGVADTIEFMRGDAGRLPFPD 109


>gi|218903939|ref|YP_002451773.1| putative methyltransferase [Bacillus cereus AH820]
 gi|228927866|ref|ZP_04090914.1| hypothetical protein bthur0010_25710 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229122364|ref|ZP_04251578.1| hypothetical protein bcere0016_26590 [Bacillus cereus 95/8201]
 gi|218536803|gb|ACK89201.1| putative methyltransferase [Bacillus cereus AH820]
 gi|228661213|gb|EEL16839.1| hypothetical protein bcere0016_26590 [Bacillus cereus 95/8201]
 gi|228831929|gb|EEM77518.1| hypothetical protein bthur0010_25710 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 247

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
              T++E+GAG G   + +  L  +   V     +  P L   + +H  N + I   D  
Sbjct: 41  PFQTMLELGAGNGGFARAMSNLNVKMTTV-----ELVPELVMFAKEHSTNDIVIHCADFY 95

Query: 106 KVDFEKFFNI 115
           K++FE+ F++
Sbjct: 96  KINFEEKFDV 105


>gi|120402278|ref|YP_952107.1| type 12 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119955096|gb|ABM12101.1| Methyltransferase type 12 [Mycobacterium vanbaalenii PYR-1]
          Length = 350

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +   V++IGAG G     L   G   V  +E   +F  IL+  + +H   + +I  D  +
Sbjct: 141 ETARVLDIGAGTGRNALALARRG-HPVDAVELTPKFAEILRTEAFKHLLNIRVIDRDVFE 199

Query: 107 V 107
            
Sbjct: 200 T 200


>gi|42527875|ref|NP_972973.1| precorrin-8W decarboxylase, putative [Treponema denticola ATCC
           35405]
 gi|41818703|gb|AAS12892.1| precorrin-8W decarboxylase, putative [Treponema denticola ATCC
           35405]
          Length = 187

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                   G  +++IG G G+++      GA  V+ +E D+  + ++K+ + +   ++ +
Sbjct: 26  IAHLQIEKGDKLLDIGGGTGSVSVEAALQGAD-VLTVEFDKTAYALIKENAKKFGVKINL 84

Query: 100 IQDDA 104
           I   A
Sbjct: 85  ILGKA 89


>gi|163942068|ref|YP_001646952.1| ribosomal protein L11 methyltransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|229135137|ref|ZP_04263938.1| Ribosomal protein L11 methyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|163864265|gb|ABY45324.1| ribosomal protein L11 methyltransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|228648314|gb|EEL04348.1| Ribosomal protein L11 methyltransferase [Bacillus cereus
           BDRD-ST196]
          Length = 312

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G TVI++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTVIDVGTGSGVLSIAAAKLGAASVQAYDLDPVAVE 212


>gi|84683977|ref|ZP_01011879.1| hypothetical protein 1099457000262_RB2654_16051 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667730|gb|EAQ14198.1| hypothetical protein RB2654_16051 [Rhodobacterales bacterium
           HTCC2654]
          Length = 253

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLE 98
           A S  + DG +V+++G G G     L T     +++ +E+   +  + +  S  +   ++
Sbjct: 37  AASVAAHDGESVLDLGCGAGAAGLCLATRVPGIRLVGVERQADYADLARKNSFDNDIDMD 96

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +++ D    D        S   +I N PY++
Sbjct: 97  VVEADI--SDLPSEVKEESYDHVIMNPPYHL 125


>gi|332969350|gb|EGK08375.1| methyltransferase domain protein [Kingella kingae ATCC 23330]
          Length = 367

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           +  +A+++ +      +++G G G L  +L   G  +V   + + +     +   ++  +
Sbjct: 177 VDLVAKAACTFAPQLAMDVGTGSGVLAVVLAKAGVAQVWATDNNPRAIECARQNVARLGY 236

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             R+EI+Q D         F       I+ N P+
Sbjct: 237 AARIEIVQTD--------LFADECVDLIVCNPPW 262


>gi|325293473|ref|YP_004279337.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3]
 gi|325061326|gb|ADY65017.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3]
          Length = 341

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L+++  +     G  +++   G G  TQ +L  GA  VI +++D       + + + 
Sbjct: 21  PVLLREVIAALEPASGKVILDGTFGAGGYTQAILDQGAN-VIALDRDPNAIAGGQAMVAA 79

Query: 93  HPNRLEIIQDDA 104
           +  RL +IQ   
Sbjct: 80  NGGRLTLIQSQF 91


>gi|299470360|emb|CBN78409.1| SAM-dependent methyltransferases [Ectocarpus siliculosus]
          Length = 422

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 16  HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKV 73
              +  +KY     L D  I +          G  +++ G G G  T++L     GAR+V
Sbjct: 196 KEGLNAEKY-----LRDAYIAQLTRLGGQVEKGGVIVDFGCGVGTSTRLLAESMPGARRV 250

Query: 74  IVIEKDQQFFPI--LKDISSQHPNRLEIIQDDA 104
           I ++       +    +   +   R+ ++  D 
Sbjct: 251 IGMDLSPYMIAVGNHHNREKKTGRRVSLVYGDV 283


>gi|296394676|ref|YP_003659560.1| tRNA (adenine-N(1)-)-methyltransferase [Segniliparus rotundus DSM
           44985]
 gi|296181823|gb|ADG98729.1| tRNA (adenine-N(1)-)-methyltransferase [Segniliparus rotundus DSM
           44985]
          Length = 294

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDISS 91
           +I        G  V+E G G G LT  LL     + +VI  E  +         ++    
Sbjct: 98  QIVMEGDIFPGARVLEAGVGSGALTCSLLRAVGQSGEVISYEIREDHAQFAVQNVERFFG 157

Query: 92  QHPNRLEIIQDDALKVDFEK 111
             P    +   D ++ D ++
Sbjct: 158 GRPANWSLAVADLVEFDPQR 177


>gi|322417812|ref|YP_004197035.1| 50S ribosomal protein L11 methyltransferase [Geobacter sp. M18]
 gi|320124199|gb|ADW11759.1| ribosomal protein L11 methyltransferase [Geobacter sp. M18]
          Length = 306

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 36  LKKIA-ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           L++IA ++ G      V+++G G G L+     LGA ++  ++ D +   + ++
Sbjct: 159 LERIAFDACGCKLPDPVLDVGTGSGVLSIAAALLGATEITAVDIDPEAVRVTQE 212


>gi|300770316|ref|ZP_07080195.1| SAM-dependent methyltransferase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300762792|gb|EFK59609.1| SAM-dependent methyltransferase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 274

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                   +++IG G G  ++ L  L  +  +V   D+    I K+ SS+  N+ ++I+ 
Sbjct: 42  LHLKPQSIILDIGGGTGKYSEWLSKLQHQVYLVEPIDKHLH-IAKERSSKLKNKFQVIKG 100

Query: 103 DALKVDFEKFF 113
           +A K++F   F
Sbjct: 101 EARKLEFPNNF 111


>gi|157107580|ref|XP_001649843.1| hexaprenyldihydroxybenzoate methyltransferase [Aedes aegypti]
 gi|108879540|gb|EAT43765.1| hexaprenyldihydroxybenzoate methyltransferase [Aedes aegypti]
          Length = 293

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 30  LLDLNIL--KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           L+  N++  ++I +S   L G+ ++E+G G G LT+ L  + A  V+ I+  ++   + +
Sbjct: 85  LIATNVIPQEQI-QSPQVLKGVNILEVGCGGGILTEALARIHAN-VVGIDPGEKLINVAR 142

Query: 88  DISSQ 92
           +   +
Sbjct: 143 EHKER 147


>gi|39974391|ref|XP_368586.1| hypothetical protein MGG_00658 [Magnaporthe oryzae 70-15]
 gi|145018427|gb|EDK02706.1| hypothetical protein MGG_00658 [Magnaporthe oryzae 70-15]
          Length = 275

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-DQQFFPIL 86
           +FL D +++           G TV+E+GAG G  + +   LGA  V+  +  D +    L
Sbjct: 77  HFLADPSLV----------AGKTVLEVGAGAGIPSLVAAHLGAAGVVATDYPDPEVLVAL 126

Query: 87  KDISSQ 92
           +    +
Sbjct: 127 RRNVEE 132


>gi|68072073|ref|XP_677950.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56498254|emb|CAH98897.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 320

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 5/123 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHP-- 94
           I     +L    +IE G G G LT  L    L    +   E +++ +  +K         
Sbjct: 88  ICLLCNALPNKKIIEAGTGTGCLTYALANCVLPNGIIHTFEYNEERYREVKKEFEDFEDV 147

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            N ++    D +  +FE F N       +      +      N +        +      
Sbjct: 148 INNIKFYHKDIINYNFEDFKNNEIDAIFLDMPNPWLCVEKAKNILKERGTFVIFLPCIEQ 207

Query: 154 FQK 156
             K
Sbjct: 208 VYK 210


>gi|15640554|ref|NP_230183.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121590693|ref|ZP_01678026.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae
           2740-80]
 gi|121728550|ref|ZP_01681572.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae V52]
 gi|147675360|ref|YP_001216033.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae O395]
 gi|153214940|ref|ZP_01949723.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae 1587]
 gi|153802554|ref|ZP_01957140.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae MZO-3]
 gi|153819121|ref|ZP_01971788.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae NCTC
           8457]
 gi|153823616|ref|ZP_01976283.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae B33]
 gi|153826934|ref|ZP_01979601.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae MZO-2]
 gi|153829907|ref|ZP_01982574.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae 623-39]
 gi|227080715|ref|YP_002809266.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae M66-2]
 gi|229507143|ref|ZP_04396649.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae BX
           330286]
 gi|229508994|ref|ZP_04398482.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae B33]
 gi|229512802|ref|ZP_04402269.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae TMA 21]
 gi|229519662|ref|ZP_04409105.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae RC9]
 gi|229520828|ref|ZP_04410250.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229525196|ref|ZP_04414601.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229606178|ref|YP_002876826.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae
           MJ-1236]
 gi|254226838|ref|ZP_04920409.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae V51]
 gi|254291217|ref|ZP_04962013.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae
           AM-19226]
 gi|254850772|ref|ZP_05240122.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae MO10]
 gi|255744240|ref|ZP_05418193.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholera CIRS
           101]
 gi|262149034|ref|ZP_06028178.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|262169843|ref|ZP_06037533.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae RC27]
 gi|297580666|ref|ZP_06942592.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae RC385]
 gi|298500965|ref|ZP_07010766.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae MAK
           757]
 gi|20139226|sp|Q9KUI8|PIMT_VIBCH RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|172047733|sp|A5F9C1|PIMT_VIBC3 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|254782277|sp|C3LS22|PIMT_VIBCM RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|9654959|gb|AAF93700.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547479|gb|EAX57587.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae
           2740-80]
 gi|121629162|gb|EAX61603.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae V52]
 gi|124115013|gb|EAY33833.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae 1587]
 gi|124121917|gb|EAY40660.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae MZO-3]
 gi|125620635|gb|EAZ48998.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae V51]
 gi|126510353|gb|EAZ72947.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae NCTC
           8457]
 gi|126518865|gb|EAZ76088.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae B33]
 gi|146317243|gb|ABQ21782.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae O395]
 gi|148874595|gb|EDL72730.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae 623-39]
 gi|149739237|gb|EDM53505.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae MZO-2]
 gi|150422911|gb|EDN14862.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae
           AM-19226]
 gi|227008603|gb|ACP04815.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae M66-2]
 gi|227012358|gb|ACP08568.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae O395]
 gi|229338777|gb|EEO03794.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229342061|gb|EEO07057.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229344351|gb|EEO09326.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae RC9]
 gi|229350051|gb|EEO15004.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae TMA 21]
 gi|229353919|gb|EEO18853.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae B33]
 gi|229355888|gb|EEO20808.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae BX
           330286]
 gi|229368833|gb|ACQ59256.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae
           MJ-1236]
 gi|254846477|gb|EET24891.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae MO10]
 gi|255738180|gb|EET93572.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholera CIRS
           101]
 gi|262021577|gb|EEY40288.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae RC27]
 gi|262031179|gb|EEY49799.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|297535082|gb|EFH73917.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae RC385]
 gi|297540213|gb|EFH76273.1| protein-L-isoaspartate O-methyltransferase [Vibrio cholerae MAK
           757]
 gi|327483353|gb|AEA77760.1| Protein-L-isoaspartate O-methyltransferase [Vibrio cholerae
           LMA3894-4]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLALTPETKVLEIGTGSGYQTAVLAKL-VNHVFTVER----IKTLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D  + +    P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWQGWPARGPFDAI 145


>gi|308506109|ref|XP_003115237.1| CRE-PMT-2 protein [Caenorhabditis remanei]
 gi|308255772|gb|EFO99724.1| CRE-PMT-2 protein [Caenorhabditis remanei]
          Length = 436

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 25  MGQNFLL----DLNILKKIA-ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
            G NF+     + N+  KI         G T+++IG G G   + +       V  I+  
Sbjct: 198 FGVNFISPGGYNENL--KIIKRFGDLKPGQTMLDIGVGIGGGARQVADEFGVHVHGIDLS 255

Query: 80  QQFFPI-LKDISSQHPNRLEIIQDDALKVDFEK 111
                I L+ +  Q  +R++    DAL   FE+
Sbjct: 256 SNMLAIALERLHEQKDSRVKYSITDALVYQFEE 288


>gi|300941126|ref|ZP_07155638.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           21-1]
 gi|300454169|gb|EFK17662.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           21-1]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMMQL 162


>gi|284043441|ref|YP_003393781.1| methyltransferase type 12 [Conexibacter woesei DSM 14684]
 gi|283947662|gb|ADB50406.1| Methyltransferase type 12 [Conexibacter woesei DSM 14684]
          Length = 177

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-----GARKVIVIEKDQQFFPILKDIS 90
           L +  E  G      ++EIG GPG    ++        G   +  I++ +         +
Sbjct: 7   LTRAVELIGVGPEQRILEIGCGPGVAAALICERLSEGSGGGHLTAIDRSETAIARASRRN 66

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           + H     +   D  + D        +    +  +  N+
Sbjct: 67  AGHVAAGTV---DFRRSDLAALALDGARFDTVFAVNVNL 102


>gi|239618399|ref|YP_002941721.1| Methyltransferase type 11 [Kosmotoga olearia TBF 19.5.1]
 gi|239507230|gb|ACR80717.1| Methyltransferase type 11 [Kosmotoga olearia TBF 19.5.1]
          Length = 235

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
                V+E+G G G ++  L      ++  I+ D++   I   
Sbjct: 47 PKATKRVLELGTGSGAISIYLARKYDVEITAIDVDEELIEIAHK 90


>gi|269119812|ref|YP_003307989.1| O-methyltransferase family 3 [Sebaldella termitidis ATCC 33386]
 gi|268613690|gb|ACZ08058.1| O-methyltransferase family 3 [Sebaldella termitidis ATCC 33386]
          Length = 209

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 23/141 (16%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL---GARKVIVIEKDQQFFPILKDI 89
             +L  +  S+ +     ++EIG   G     L  +      K   IE D++ +   K+ 
Sbjct: 40  EEVLNFMIFSAKTAKAANILEIGTAIGYSGVFLAEISEGNGGKFYTIEIDEERYSRAKEN 99

Query: 90  SSQHP-NRLEIIQDDAL--------KVD----------FEKFFNISSPIRIIANLPYNIG 130
             +     + +I  DAL        K D          ++KFF+++ P ++  N    I 
Sbjct: 100 FEKFSFENVTLILGDALEKISEIDEKFDFIFIDAAKGQYKKFFDLAYP-KLSDNCIIFID 158

Query: 131 TRLLFNWISADTWPPFWESLT 151
             +    ++    P  ++++ 
Sbjct: 159 NIMFKGLVAEAEIPKRYKTIV 179


>gi|256371949|ref|YP_003109773.1| Methyltransferase type 11 [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008533|gb|ACU54100.1| Methyltransferase type 11 [Acidimicrobium ferrooxidans DSM 10331]
          Length = 267

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQ 101
               G TV+++G GPG +T  L   +    V+ ++ +         ++++   + + ++ 
Sbjct: 33  HLHRGATVLDVGCGPGTITVDLARIVAPGTVVALDAEIGMLQATAALAAERQLDNVTVVL 92

Query: 102 DDALKVDFEK 111
            DA+ + +  
Sbjct: 93  ADAMALPWPD 102


>gi|228990819|ref|ZP_04150784.1| Methyltransferase type 12 [Bacillus pseudomycoides DSM 12442]
 gi|228769345|gb|EEM17943.1| Methyltransferase type 12 [Bacillus pseudomycoides DSM 12442]
          Length = 687

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           G T++EIG G G +      +   K VI I+  +     L     +     E+   DAL 
Sbjct: 429 GDTIVEIGPGGGVMMNKFKEVYPNKSVIGIDLSRNVIEKLTSDKYEKGYNWEVTLGDALH 488

Query: 107 V 107
           +
Sbjct: 489 L 489


>gi|257126499|ref|YP_003164613.1| methyltransferase type 11 [Leptotrichia buccalis C-1013-b]
 gi|257050438|gb|ACV39622.1| Methyltransferase type 11 [Leptotrichia buccalis C-1013-b]
          Length = 249

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + + E         ++++G G G LT+ +   G  KV+ ++  Q+F    + I       
Sbjct: 24  EDLIEWLNPQKDEYILDLGCGDGVLTKKITEYGC-KVLGLDGSQKFVEATRKIG------ 76

Query: 97  LEIIQDDALKVDFEKFFN 114
           +E +Q DA  + FE  F+
Sbjct: 77  VEAVQGDAQNMKFENEFD 94


>gi|257387329|ref|YP_003177102.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257169636|gb|ACV47395.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 206

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           F+ +  +  +            V+++G G G  T+ LL        V   DQ     L+ 
Sbjct: 27  FIWNEEMRDEAIAKLDIEPDDHVLDVGCGTGFATEGLLEATEH---VYGLDQ-SAHQLEK 82

Query: 89  ISSQHPNR--LEIIQDDA 104
             ++   R  +   + DA
Sbjct: 83  AYAKFGKRGPVAFHRGDA 100


>gi|221640206|ref|YP_002526468.1| methyltransferase small [Rhodobacter sphaeroides KD131]
 gi|221160987|gb|ACM01967.1| Methyltransferase small [Rhodobacter sphaeroides KD131]
          Length = 253

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           A +  +  G +V+E+G G G  +  L       ++  +E    +  + ++ ++ +   LE
Sbjct: 36  AAAVPASAGQSVLELGCGAGVASLCLAARVPGLRLAGLELQPAYAALARENAAMNGVALE 95

Query: 99  IIQDD--ALKVDFEKFFNISSPIRIIANLPYN 128
           +++ D  A+     + F+      +IAN PY 
Sbjct: 96  VVEGDLSAMPAVLRRSFD-----HVIANPPYY 122


>gi|94495889|ref|ZP_01302468.1| putative methyl transferase [Sphingomonas sp. SKA58]
 gi|94424581|gb|EAT09603.1| putative methyl transferase [Sphingomonas sp. SKA58]
          Length = 281

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 12/65 (18%)

Query: 29 FLLDLN---------ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK- 78
          FL D+N         ++ +   + GSL+G  ++++G G   +T  L + GA +VI ++  
Sbjct: 29 FLPDMNEWVRNHYVGVVDEFVAAIGSLEGKRILDLGCGEMLMTYGLASRGAEQVIGLDIT 88

Query: 79 --DQQ 81
            D  
Sbjct: 89 TPDPD 93


>gi|260062312|ref|YP_003195392.1| hypothetical protein RB2501_11982 [Robiginitalea biformata
           HTCC2501]
 gi|88783874|gb|EAR15045.1| hypothetical protein RB2501_11982 [Robiginitalea biformata
           HTCC2501]
          Length = 212

 Score = 37.5 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E+        +I++G G   L   LL  G   + V++   +     ++      NR++ I
Sbjct: 37  EAFEVPTTARIIDVGGGDSLLADHLLERGYSDITVLDISAEAINRARERLGHQANRVKWI 96

Query: 101 QDDALKVDFEKFFN 114
             DA        ++
Sbjct: 97  VADAANFTPSDTYD 110


>gi|317485551|ref|ZP_07944428.1| cyclopropane-fatty-acyl-phospholipid synthase [Bilophila
           wadsworthia 3_1_6]
 gi|316923231|gb|EFV44440.1| cyclopropane-fatty-acyl-phospholipid synthase [Bilophila
           wadsworthia 3_1_6]
          Length = 370

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
             I       +G++V++IG G G L+  +      KV  +    +     ++  + H
Sbjct: 144 DLICRKLDLKEGMSVLDIGCGWGGLSLYMAKEYGVKVTGVTISTEQLAYAREHDAGH 200


>gi|315645631|ref|ZP_07898755.1| hypothetical protein PVOR_09115 [Paenibacillus vortex V453]
 gi|315279109|gb|EFU42419.1| hypothetical protein PVOR_09115 [Paenibacillus vortex V453]
          Length = 705

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQHPNRLEIIQDDAL 105
           G  V++IG G G L   L+      V  +  D        L+          E+++ DAL
Sbjct: 444 GEVVLDIGPGGGVLLD-LMEEQLPHVRPVGIDISSNVIEALEKRKRLEHKPWEVLKGDAL 502

Query: 106 KV 107
           ++
Sbjct: 503 RL 504


>gi|300115052|ref|YP_003761627.1| methyltransferase type 12 [Nitrosococcus watsonii C-113]
 gi|299540989|gb|ADJ29306.1| Methyltransferase type 12 [Nitrosococcus watsonii C-113]
          Length = 222

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I  +I  +       +++EIG G G L  ++   G ++    +   +     ++   +  
Sbjct: 67  ISDRIVRA----KIDSILEIGCGSGQLACLIRDKGVKEYHGFDFSPKRIIQAENACPE-- 120

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
                 + DA K D    F       ++    
Sbjct: 121 --FNFSEQDAFKTD---LFTTCDYSAVVCTEF 147


>gi|270014703|gb|EFA11151.1| hypothetical protein TcasGA2_TC004755 [Tribolium castaneum]
          Length = 413

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 15/115 (13%)

Query: 18  KIIPKKYMGQNFLLDLNILKKIA-ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            +  KK        +++++ KI  +S+   D   +++IG+G G+L++ML      KV  I
Sbjct: 79  NVKAKKR------HEISVMSKICYDSAVKTDCFYIVDIGSGLGHLSRMLNYGYGFKVCTI 132

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           E       +L   +    N  EI+    L+  F      +  + I   +  NI T
Sbjct: 133 E----AQELLSQQAQNLDNEFEIV----LERKFPGCLKYNKTVHINKRIESNITT 179


>gi|256832356|ref|YP_003161083.1| hemolysin A [Jonesia denitrificans DSM 20603]
 gi|256685887|gb|ACV08780.1| hemolysin A [Jonesia denitrificans DSM 20603]
          Length = 310

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 12/117 (10%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEK--DQQFFPILKDISSQHPNRLEIIQD-DA 104
           G   ++IGA  G  TQ+LL  GA  VI ++   DQ   P L++       R+ +++  +A
Sbjct: 87  GRHALDIGASTGGFTQVLLERGAPTVIALDVGHDQ-LVPALRE-----DERVHVMEKVNA 140

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
             +   +     +P   +A++ +   T+++   ++  + P     L +  Q EVG  
Sbjct: 141 RTLTTNQL--PWTPTVTVADVSFISLTKII-PAVAHISPPGADLLLMVKPQFEVGRS 194


>gi|229004596|ref|ZP_04162334.1| Methyltransferase type 12 [Bacillus mycoides Rock1-4]
 gi|228756637|gb|EEM05944.1| Methyltransferase type 12 [Bacillus mycoides Rock1-4]
          Length = 671

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           G T++EIG G G +      +   K VI I+  +     L     +     E+   DAL 
Sbjct: 413 GDTIVEIGPGGGVMMNKFKEVYPNKSVIGIDLSRNVIEKLTSDKYEKGYNWEVTLGDALH 472

Query: 107 V 107
           +
Sbjct: 473 L 473


>gi|238491338|ref|XP_002376906.1| S-adenosyl-methionine-sterol-C- methyltransferase putative
           [Aspergillus flavus NRRL3357]
 gi|220697319|gb|EED53660.1| S-adenosyl-methionine-sterol-C- methyltransferase putative
           [Aspergillus flavus NRRL3357]
          Length = 389

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK---DISSQH 93
           + IAE  G   G  V+++G G G +   +       V  +  D       +   +     
Sbjct: 147 ESIAEHIGLKPGDKVLDLGCGRGRVAAHMTQYSGAHVTGLNIDPNQIAQARSYNEKLGFK 206

Query: 94  PNRLEIIQDDALKVDFEK 111
            NR  +   ++L + FE 
Sbjct: 207 DNRFIVQDFNSLPLPFED 224


>gi|261405353|ref|YP_003241594.1| type 11 methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261281816|gb|ACX63787.1| Methyltransferase type 11 [Paenibacillus sp. Y412MC10]
          Length = 254

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE      G  ++++G G G+LT  +   GA  V  ++   +     K      P     
Sbjct: 26  AELLAPQPGERILDLGCGTGDLTHEISKSGAH-VTGMDYSSEMIVRAKSKYPGLP----- 79

Query: 100 IQDDALKVDFEKFFNISSPIRIIANL 125
                L  D E F   +    + +N 
Sbjct: 80  ----FLTGDGENFETETPYDAVFSNA 101


>gi|149926903|ref|ZP_01915162.1| hypothetical protein LMED105_12917 [Limnobacter sp. MED105]
 gi|149824455|gb|EDM83673.1| hypothetical protein LMED105_12917 [Limnobacter sp. MED105]
          Length = 227

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93
              + +      G+ V +IGAG G++ QM+    A    V  ++   Q   +L+  +   
Sbjct: 61  TDLLIQKLNLKPGMVVGDIGAGTGHIAQMMAEKIAPNGVVWAVDIQPQMIKMLQKKADGL 120

Query: 94  P-NRLEI 99
           P  RL+I
Sbjct: 121 PKGRLQI 127


>gi|172062364|ref|YP_001810015.1| trans-aconitate 2-methyltransferase [Burkholderia ambifaria MC40-6]
 gi|171994881|gb|ACB65799.1| Trans-aconitate 2-methyltransferase [Burkholderia ambifaria MC40-6]
          Length = 262

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 17/91 (18%)

Query: 32  DLNI--LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILK 87
           D     ++ +  +       T I+IG GPGN T+ L+   AR   V   D         +
Sbjct: 17  DERTRPVRDLLAAVPDTPIRTAIDIGCGPGNSTEALIAR-ARDATVRGIDASPDMIAAAR 75

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSP 118
                           AL+ D         P
Sbjct: 76  KRLP------------ALRFDLADVSTWDDP 94


>gi|29829527|ref|NP_824161.1| methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29606635|dbj|BAC70696.1| putative methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 261

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 11/111 (9%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNR 96
            + E+        V+++  G G +T  LL          ++ D     I +   +    R
Sbjct: 45  DMVEAL-VGPEPRVLDLACGTGTITARLLARLPNATSTGVDLDPALLTIAEGTFAG-DER 102

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           +  +  D          +   P R+  +    + T    +W+ ++     +
Sbjct: 103 VSFVTAD--------LKDPEWPARLPYDAYDAVLTATALHWLHSEPLAALY 145


>gi|332710211|ref|ZP_08430162.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya
           majuscula 3L]
 gi|332350990|gb|EGJ30579.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya
           majuscula 3L]
          Length = 242

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           ++EIG G G L + LL L     I    D     +L+   ++  NR ++++ + L +D +
Sbjct: 39  LLEIGVGTGLLAEKLLELDPSYEIT-GIDFT-PAMLERSKARLGNRAKVVEGNVLSMDLQ 96

Query: 111 KFFN 114
           + F+
Sbjct: 97  ESFD 100


>gi|320105845|ref|YP_004181435.1| ubiquinone/menaquinone biosynthesis methyltransferase [Terriglobus
           saanensis SP1PR4]
 gi|319924366|gb|ADV81441.1| ubiquinone/menaquinone biosynthesis methyltransferase [Terriglobus
           saanensis SP1PR4]
          Length = 250

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 21/166 (12%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTL---GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                V+++  G G++T+ LL     GA  V+ I+       + +   +        ++ 
Sbjct: 62  RPDAKVLDLCCGTGDMTRALLARRPAGAEPVLAIDFSHNMIELARTKLAVENAIF--VEA 119

Query: 103 DALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFNWISADTWPPFW-----ESLTLLFQ 155
           DAL +  E      + S         Y +G R +   +              E L     
Sbjct: 120 DALHLPLEDATQDLVVSAFGFRNLADYEVGLREIRRVLKPGGQIGILDFGEPEGLLGKAY 179

Query: 156 KEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
           +   +++  +  +   G  S  T                 FP PKV
Sbjct: 180 RVYFKQVLPRIGAMISGSRSSYTYLPASVEK---------FPKPKV 216


>gi|307298523|ref|ZP_07578326.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915688|gb|EFN46072.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 261

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD--ISSQHP 94
           I        G  V E G G G +T           KV+  EK Q F    +       H 
Sbjct: 86  ILLYLDIKPGDVVYEAGTGTGVMTSAFSRAVCESGKVVSYEKRQDFLEKAQKNVRHLGHI 145

Query: 95  NRLEIIQDDALKVDFEKFFN 114
            R+  +  D  +    +  +
Sbjct: 146 ERVTFVSGDVAECKESQKAD 165


>gi|294793156|ref|ZP_06758302.1| putative ribosomal RNA adenine dimethylase [Veillonella sp. 6_1_27]
 gi|294456101|gb|EFG24465.1| putative ribosomal RNA adenine dimethylase [Veillonella sp. 6_1_27]
          Length = 276

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
                ++++IGAGPG+ T        + V  IE  +    +LK+ + +     + II++ 
Sbjct: 65  LTPDSSMLDIGAGPGSFTIP-FAQHIKSVTAIEPSKGMVAVLKENAKELNVENINIIEEM 123

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
              +  +   +    +  I+ + + +   +    +  + +   + ++    
Sbjct: 124 VQDLPQDGSLDSQFDVVAISLVLW-MFPDVWPRILQMEQYSKGYCAIVAGI 173


>gi|237799709|ref|ZP_04588170.1| group 2 family glycosyl transferase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022564|gb|EGI02621.1| group 2 family glycosyl transferase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 1609

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            + G +++EIGAG G +++ L    A  V+ +E   +   I    +    N + ++ +  
Sbjct: 84  LIKGKSILEIGAGCGAISRYLGEADA-TVLSLEGSPRRAAIAASRTRDLDN-VTVLAERF 141

Query: 105 LKVDFEKFFNI 115
                ++ F++
Sbjct: 142 DDFKVDQQFDV 152


>gi|268317875|ref|YP_003291594.1| ribosomal L11 methyltransferase [Rhodothermus marinus DSM 4252]
 gi|262335409|gb|ACY49206.1| ribosomal L11 methyltransferase [Rhodothermus marinus DSM 4252]
          Length = 285

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
              G  V++ G G G LT   L LGA   I  + D       ++  +++   +R+E  Q 
Sbjct: 145 VEPGARVLDAGTGTGILTIAALKLGAGSAIAFDIDPWAAENAQENFARNGVADRVEFRQG 204


>gi|228996920|ref|ZP_04156553.1| Methyltransferase type 12 [Bacillus mycoides Rock3-17]
 gi|228762799|gb|EEM11713.1| Methyltransferase type 12 [Bacillus mycoides Rock3-17]
          Length = 680

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           G T++EIG G G +      +   K VI I+  +     L     +     E+   DAL 
Sbjct: 422 GDTIVEIGPGGGVMMNKFKEVYPNKSVIGIDLSRNVIEKLTSDKYEKGYNWEVTLGDALH 481

Query: 107 V 107
           +
Sbjct: 482 L 482


>gi|218548744|ref|YP_002382535.1| cyclopropane fatty acyl phospholipid synthase [Escherichia
           fergusonii ATCC 35469]
 gi|218356285|emb|CAQ88903.1| cyclopropane fatty acyl phospholipid synthase
           (unsaturated-phospholipid methyltransferase)
           [Escherichia fergusonii ATCC 35469]
 gi|324113435|gb|EGC07410.1| cyclopropane-fatty-acyl-phospholipid synthase [Escherichia
           fergusonii B253]
 gi|325497153|gb|EGC95012.1| cyclopropane fatty acyl phospholipid synthase [Escherichia
           fergusonii ECD227]
          Length = 382

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           LK I E      G+ V++IG G G L+Q L T     V+ +    +   + ++  +    
Sbjct: 156 LKMICEKLHLKPGMRVLDIGCGWGGLSQYLATHYGASVVGVTISAEQQKMAQERCAGLD- 214

Query: 96  RLEIIQDD 103
            +EI+ +D
Sbjct: 215 -VEILLED 221


>gi|163840782|ref|YP_001625187.1| tRNA (adenine-N(1)-)-methyltransferase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954258|gb|ABY23773.1| tRNA (adenine-N(1)-)-methyltransferase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 364

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPI----LKDISS 91
           +I   +    G  V+E G G G L+  LL     K  +   E+ ++F  I    ++ I +
Sbjct: 110 QIVTMADIFPGARVVEAGVGSGALSISLLRAVGDKGYLHSFERREEFAAIARGNVETIFA 169

Query: 92  QHPNRLEIIQDDA 104
                 +I   D 
Sbjct: 170 GLHPAWQISLGDF 182


>gi|156408083|ref|XP_001641686.1| predicted protein [Nematostella vectensis]
 gi|156228826|gb|EDO49623.1| predicted protein [Nematostella vectensis]
          Length = 349

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKD--QQFFPILKDISS 91
           +L ++ + +   DG  V+++G G G+L   +       KV  +     Q+ F   +    
Sbjct: 103 VLDQVCKRAQVEDGQDVMDLGCGWGSLALWVCEKYPNCKVTCVSNSQTQRAFIEKQAQLR 162

Query: 92  QHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
              NRL+ I  DA        F+ I S         Y I    + +W+     P     +
Sbjct: 163 GFTNRLQCITADANVFSTSLRFDRIISNEMFEHMKNYEILMSRVSSWLK----PHGLLFI 218

Query: 151 TLLFQKEVGERITAQKNSP 169
            +L  +E       +K S 
Sbjct: 219 QILCHREFAYEFKTKKGSD 237


>gi|32266933|ref|NP_860965.1| type I restriction/modification enzyme [Helicobacter hepaticus ATCC
           51449]
 gi|32262985|gb|AAP78031.1| type I restriction/modification enzyme [Helicobacter hepaticus ATCC
           51449]
          Length = 1164

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 35  ILKKIAESSG-SLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKD--IS 90
           I   I  S     +   +++   G G+ LT+ +      K+  IEK++    + K   I 
Sbjct: 457 ITNFIINSLPTLSNNAKILDFACGAGHFLTEFIAHNKNAKLYGIEKNKDLSKVAKTACIF 516

Query: 91  SQHPNRLEIIQDDALKV---DFEKFFNISSPIRIIANLPYNI 129
               ++ +II  DAL     +++  F   S   I++N PY++
Sbjct: 517 HNPKSKSQIIFQDALDFIKENYKDEFENESFDLILSNPPYSV 558


>gi|121604357|ref|YP_981686.1| cyclopropane-fatty-acyl-phospholipid synthase [Polaromonas
           naphthalenivorans CJ2]
 gi|120593326|gb|ABM36765.1| Cyclopropane-fatty-acyl-phospholipid synthase [Polaromonas
           naphthalenivorans CJ2]
          Length = 410

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +++    +G   G  V+EIG G G L +M
Sbjct: 180 VRRALRMAGVKPGDRVLEIGCGWGALAEM 208


>gi|254230171|ref|ZP_04923565.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio sp. Ex25]
 gi|262394632|ref|YP_003286486.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio sp. Ex25]
 gi|151937309|gb|EDN56173.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio sp. Ex25]
 gi|262338226|gb|ACY52021.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio sp. Ex25]
          Length = 418

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP 94
            ++ +         VIEIG G G +   +       V    I ++Q  +   K       
Sbjct: 191 DRLCQQLNLQPSDRVIEIGTGWGAMAIYMAEQYGCHVTTTTISEEQHAYAEQKIRERNLG 250

Query: 95  NRLEIIQDD 103
            ++ +++ D
Sbjct: 251 GKITLLKQD 259


>gi|15607231|ref|NP_214603.1| methyltransferase/methylase [Mycobacterium tuberculosis H37Rv]
 gi|15839469|ref|NP_334506.1| methyltransferase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31791267|ref|NP_853760.1| methyltransferase/methylase [Mycobacterium bovis AF2122/97]
 gi|121636002|ref|YP_976225.1| putative methyltransferase/methylase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148659851|ref|YP_001281374.1| putative methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148821281|ref|YP_001286035.1| methyltransferase [Mycobacterium tuberculosis F11]
 gi|167970620|ref|ZP_02552897.1| hypothetical methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|215406079|ref|ZP_03418260.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|215413945|ref|ZP_03422607.1| methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|215425288|ref|ZP_03423207.1| methyltransferase [Mycobacterium tuberculosis T92]
 gi|215433005|ref|ZP_03430924.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|215448367|ref|ZP_03435119.1| methyltransferase [Mycobacterium tuberculosis T85]
 gi|218755816|ref|ZP_03534612.1| methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|219555874|ref|ZP_03534950.1| methyltransferase [Mycobacterium tuberculosis T17]
 gi|224988475|ref|YP_002643162.1| putative methyltransferase/methylase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253797007|ref|YP_003030008.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 1435]
 gi|254233486|ref|ZP_04926812.1| hypothetical protein TBCG_00090 [Mycobacterium tuberculosis C]
 gi|254366545|ref|ZP_04982589.1| hypothetical methyltransferase/methylase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549021|ref|ZP_05139468.1| methyltransferase/methylase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260184946|ref|ZP_05762420.1| methyltransferase/methylase [Mycobacterium tuberculosis CPHL_A]
 gi|260199085|ref|ZP_05766576.1| methyltransferase/methylase [Mycobacterium tuberculosis T46]
 gi|260203233|ref|ZP_05770724.1| methyltransferase/methylase [Mycobacterium tuberculosis K85]
 gi|289441458|ref|ZP_06431202.1| methyltransferase/methylase [Mycobacterium tuberculosis T46]
 gi|289445619|ref|ZP_06435363.1| methyltransferase/methylase [Mycobacterium tuberculosis CPHL_A]
 gi|289552340|ref|ZP_06441550.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 605]
 gi|289567979|ref|ZP_06448206.1| methyltransferase/methylase [Mycobacterium tuberculosis T17]
 gi|289572669|ref|ZP_06452896.1| methyltransferase/methylase [Mycobacterium tuberculosis K85]
 gi|289747856|ref|ZP_06507234.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289748558|ref|ZP_06507936.1| methyltransferase/methylase [Mycobacterium tuberculosis T92]
 gi|289756151|ref|ZP_06515529.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289760188|ref|ZP_06519566.1| methyltransferase/methylase [Mycobacterium tuberculosis T85]
 gi|289764205|ref|ZP_06523583.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294995707|ref|ZP_06801398.1| methyltransferase/methylase [Mycobacterium tuberculosis 210]
 gi|297632562|ref|ZP_06950342.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 4207]
 gi|297729535|ref|ZP_06958653.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN R506]
 gi|298527481|ref|ZP_07014890.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306778384|ref|ZP_07416721.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu001]
 gi|306778916|ref|ZP_07417253.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu002]
 gi|306782704|ref|ZP_07421026.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu003]
 gi|306787071|ref|ZP_07425393.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu004]
 gi|306791628|ref|ZP_07429930.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu005]
 gi|306795691|ref|ZP_07433993.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu006]
 gi|306801666|ref|ZP_07438334.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu008]
 gi|306805877|ref|ZP_07442545.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu007]
 gi|306970273|ref|ZP_07482934.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu009]
 gi|306974506|ref|ZP_07487167.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu010]
 gi|307082214|ref|ZP_07491384.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu011]
 gi|307082556|ref|ZP_07491669.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu012]
 gi|313656863|ref|ZP_07813743.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN V2475]
 gi|54039900|sp|P65347|Y092_MYCBO RecName: Full=Uncharacterized methyltransferase Mb0092
 gi|54042587|sp|P65346|Y089_MYCTU RecName: Full=Uncharacterized methyltransferase Rv0089/MT0098
 gi|1405759|emb|CAA98925.1| POSSIBLE METHYLTRANSFERASE/METHYLASE [Mycobacterium tuberculosis
           H37Rv]
 gi|13879144|gb|AAK44320.1| methyltransferase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31616852|emb|CAD92954.1| POSSIBLE METHYLTRANSFERASE/METHYLASE [Mycobacterium bovis
           AF2122/97]
 gi|121491649|emb|CAL70107.1| Possible methyltransferase/methylase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124603279|gb|EAY61554.1| hypothetical protein TBCG_00090 [Mycobacterium tuberculosis C]
 gi|134152057|gb|EBA44102.1| hypothetical methyltransferase/methylase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504003|gb|ABQ71812.1| putative methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148719808|gb|ABR04433.1| hypothetical methyltransferase [Mycobacterium tuberculosis F11]
 gi|224771588|dbj|BAH24394.1| putative methyltransferase/methylase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253318510|gb|ACT23113.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 1435]
 gi|289414377|gb|EFD11617.1| methyltransferase/methylase [Mycobacterium tuberculosis T46]
 gi|289418577|gb|EFD15778.1| methyltransferase/methylase [Mycobacterium tuberculosis CPHL_A]
 gi|289436972|gb|EFD19465.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 605]
 gi|289537100|gb|EFD41678.1| methyltransferase/methylase [Mycobacterium tuberculosis K85]
 gi|289541732|gb|EFD45381.1| methyltransferase/methylase [Mycobacterium tuberculosis T17]
 gi|289688384|gb|EFD55872.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289689145|gb|EFD56574.1| methyltransferase/methylase [Mycobacterium tuberculosis T92]
 gi|289696738|gb|EFD64167.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289711711|gb|EFD75727.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289715752|gb|EFD79764.1| methyltransferase/methylase [Mycobacterium tuberculosis T85]
 gi|298497275|gb|EFI32569.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308213342|gb|EFO72741.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu001]
 gi|308328094|gb|EFP16945.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu002]
 gi|308332468|gb|EFP21319.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu003]
 gi|308336232|gb|EFP25083.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu004]
 gi|308339846|gb|EFP28697.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu005]
 gi|308343840|gb|EFP32691.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu006]
 gi|308347625|gb|EFP36476.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu007]
 gi|308351566|gb|EFP40417.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu008]
 gi|308352251|gb|EFP41102.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu009]
 gi|308356208|gb|EFP45059.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu010]
 gi|308360161|gb|EFP49012.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu011]
 gi|308367711|gb|EFP56562.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu012]
 gi|323717289|gb|EGB26495.1| methyltransferase/methylase [Mycobacterium tuberculosis CDC1551A]
 gi|326905849|gb|EGE52782.1| methyltransferase/methylase [Mycobacterium tuberculosis W-148]
 gi|328456796|gb|AEB02219.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 4207]
          Length = 197

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             + ++   L    V+++G G G L    L      V  ++ D    P+L+   ++  N 
Sbjct: 12  DALLDAMVPLGTQCVLDVGCGDG-LLAARLARRIPYVTAVDID---APVLRRAQTRFANA 67

Query: 97  -LEIIQDDALKVDFE 110
            +  +  D +  +  
Sbjct: 68  PIRWLHADIMTAELP 82


>gi|329940852|ref|ZP_08290132.1| hypothetical protein SGM_5624 [Streptomyces griseoaurantiacus
          M045]
 gi|329300146|gb|EGG44044.1| hypothetical protein SGM_5624 [Streptomyces griseoaurantiacus
          M045]
          Length = 225

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           I  ++    G  ++E+G G G +T  LL  G R V  +++  +    ++
Sbjct: 33 DIIAAAVP-AGARILELGCGAGRMTHPLLERGFR-VTAVDESAEMLERVR 80


>gi|298707728|emb|CBJ26045.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 165

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDIS-SQ 92
           +++   E    +    + ++G G G L    +     + + +E D++F    L  ++ +Q
Sbjct: 22  VIRMAIEMLQLVKESILYDLGCGDGRLLVEAIKASGARGVGVEYDKRFVDRALTRVADAQ 81

Query: 93  HPNRLEIIQDDALKVDFEK 111
             ++++++  + L VD  +
Sbjct: 82  LEHKIKVVHGNVLDVDIVE 100


>gi|299141805|ref|ZP_07034940.1| methyltransferase [Prevotella oris C735]
 gi|298576656|gb|EFI48527.1| methyltransferase [Prevotella oris C735]
          Length = 176

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDAL 105
           +G T +++ AG G+++  L++ G ++V+ +E D+     ++   ++   ++  +I+ D  
Sbjct: 43  EGATALDLFAGTGSISLELVSRGCKQVVSVEADRDHANFIRQCFAKLKEDKDLLIRGDVF 102

Query: 106 KVDFEKFFNISSPIRIIANLPYNI 129
           +         +    I A+ PY +
Sbjct: 103 RFLKSCHQQFN---FIFADPPYAL 123


>gi|288555681|ref|YP_003427616.1| ribosomal protein L11 methyltransferase [Bacillus pseudofirmus OF4]
 gi|288546841|gb|ADC50724.1| ribosomal protein L11 methyltransferase [Bacillus pseudofirmus OF4]
          Length = 310

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQDDAL 105
           G  VI++G G G L+     LGA++VI ++ DQ       L    +Q  + + + Q + L
Sbjct: 175 GEEVIDVGTGSGVLSIAAAKLGAKRVIGLDLDQVAVDSAALNVELNQVHDTVTVRQGNLL 234

Query: 106 K 106
           +
Sbjct: 235 E 235


>gi|284161295|ref|YP_003399918.1| spermidine synthase [Archaeoglobus profundus DSM 5631]
 gi|284011292|gb|ADB57245.1| spermidine synthase [Archaeoglobus profundus DSM 5631]
          Length = 270

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-----ISSQHPNRLEIIQDD 103
             V+ IG G G   + +L    ++V+++E D+      K+       +    R++++ +D
Sbjct: 73  EKVLVIGGGDGGAVREVLKHDPKEVVMVEIDENVVKACKEYIGIDRGALEDPRVKVLFED 132

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
            L+       +    I +    P  I   L+ +           +      Q    +
Sbjct: 133 GLEFVKSC-KDKFDVIIVDGTDPNPISQALISSEF-YRDCAKICDYFVTQSQSPFAQ 187


>gi|240170834|ref|ZP_04749493.1| hypothetical protein MkanA1_16092 [Mycobacterium kansasii ATCC
           12478]
          Length = 348

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E++     + V+EIGAG G  T  L   G   V V+E   +F  I++  + +    + +I
Sbjct: 141 EAAEPR-TVRVLEIGAGTGRNTLALARRG-HPVDVVEMTPKFADIIRCDAERESLDVRVI 198

Query: 101 QDDA 104
             D 
Sbjct: 199 VRDV 202


>gi|225848045|ref|YP_002728208.1| S-adenosylmethionine-dependent methyltransferase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643992|gb|ACN99042.1| S-adenosylmethionine-dependent methyltransferase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 203

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDISS 91
            ++ + I +       + +++ G G G LT  L+    R V  ++  Q    + LK    
Sbjct: 22  KSVAENIKKHIPLNKDMKLLDFGCGTGLLTFFLIDKVGRAV-GVDSSQGMCEVFLKKAKE 80

Query: 92  QHPNRLEIIQDDALKVDFEKFFNI 115
            + + +E++  D  K D ++ F++
Sbjct: 81  NNIDNVEVLNVDLEKQDIDQKFDV 104


>gi|225619180|ref|YP_002720406.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira
           hyodysenteriae WA1]
 gi|259494561|sp|C0QX75|RLME_BRAHW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|225213999|gb|ACN82733.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira
           hyodysenteriae WA1]
          Length = 193

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 7/112 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+++G  PG+ +Q +L    +   V+  D     IL +  +    R   I  D 
Sbjct: 35  IKASDNVLDVGCSPGSFSQYMLNKILKSGSVVGVD-----ILPNSFAH--QRFTFILGDI 87

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
             +D   F N    + +   +P     R   ++ S       ++    + ++
Sbjct: 88  KDMDVTTFNNTLFDVVVSDAMPNTTSDRETNHFRSISLCRSIFDLAKEVLKE 139


>gi|221236546|ref|YP_002518983.1| methyltransferase [Caulobacter crescentus NA1000]
 gi|220965719|gb|ACL97075.1| methyltransferase [Caulobacter crescentus NA1000]
          Length = 292

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQ 92
           I + + + +    G  V+++G G G  T         +   +  D       + +  + +
Sbjct: 49  IAQAVVDRADLRAGEAVLDVGCGSGATTFEAAWRVGPQGRAVGADISGALLELARRRAGE 108

Query: 93  HP-NRLEIIQDDALKVDFEKFFN 114
                ++ +Q DA   DF   F+
Sbjct: 109 QGLEGVDFVQADAQTHDFGAGFD 131


>gi|209521506|ref|ZP_03270210.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. H160]
 gi|209498066|gb|EDZ98217.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. H160]
          Length = 250

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDIS 90
            ++  +  +++G   G T+  IG+G G  T +L  L   A +V   E D           
Sbjct: 51  PSLHARCLDAAGISRGETITHIGSGSGYYTALLAHLTGEAGRVTAYEIDPGLSAHAASNL 110

Query: 91  SQHPNRLEIIQD 102
           + H   + ++Q+
Sbjct: 111 A-HLEHVRVLQE 121


>gi|167043985|gb|ABZ08671.1| putative methyltransferase [uncultured marine crenarchaeote
           HF4000_APKG3K8]
          Length = 284

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKD 88
           I   +G   G  V+EIG G G+LT  L         V   + + +F  I + 
Sbjct: 88  IVARTGLTSGQKVVEIGTGSGSLTSFLAGIVKPRGHVYTYDVEPKFMKIAEK 139


>gi|52549505|gb|AAU83354.1| menaquinone biosynthesis methyltransferase [uncultured archaeon
           GZfos27E7]
          Length = 279

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 16/97 (16%)

Query: 20  IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIE 77
             +K +          L  I +S     G   ++ G G G++T++L        K+I ++
Sbjct: 24  KFRKSL----------LDSIIKSLNIPPGSNGLDAGCGIGSVTKLLAETVGENGKIIGLD 73

Query: 78  KDQQFFPILKDISSQHPNRLEIIQDDA--LKVDFEKF 112
             + F    K+ +     + +  + D   L  +   F
Sbjct: 74  ISKDFIQYAKNNNQTKNIQFK--EGDINSLHFNDNSF 108


>gi|33637047|gb|AAQ23684.1| unknown [Geobacillus stearothermophilus]
          Length = 771

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+E+G   G +T +L  L   +V  +E D     +  + + ++ N   +I  D 
Sbjct: 570 VGKNKKVLELGCATGYMTNILTNLLGCEVSCVEYD----AVAAEKARRYSNN--VIVGDL 623

Query: 105 LKVDFEKFFNISSPIRII 122
              DF + F       II
Sbjct: 624 NNFDFSQHFQKGEFDVII 641


>gi|332528304|ref|ZP_08404306.1| hypothetical protein HGR_00350 [Hylemonella gracilis ATCC 19624]
 gi|332042249|gb|EGI78573.1| hypothetical protein HGR_00350 [Hylemonella gracilis ATCC 19624]
          Length = 190

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL---GARKVIVIEKDQQ 81
            GQ       +  +I E+        V E GAG G L   LL +     R+  +++    
Sbjct: 56  FGQ------ALAAQIGEALERTGTDQVWEFGAGSGALALQLLRVLRGKVRRYTIVDVSGA 109

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
                ++   +  +     Q D  ++D+      +    ++ N
Sbjct: 110 LRARQQETLQEFAD-----QADV-RIDWATSLPEAMHGVVVGN 146


>gi|300782038|ref|YP_003762329.1| methyltransferase type 11 [Amycolatopsis mediterranei U32]
 gi|299791552|gb|ADJ41927.1| methyltransferase type 11 [Amycolatopsis mediterranei U32]
          Length = 217

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           ++G  DG  ++E+  GPG     L   G R V  ++       I ++  +         Q
Sbjct: 41  TAGLADGAEILEVAPGPGFFAVELAKRGYR-VTGLDISHTMVEIARENRAGLDIDFR--Q 97

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            D   V    F + S    +      N    + 
Sbjct: 98  GD---VTQAPFADESFDFVVCQAAFKNFRQPVT 127


>gi|297159943|gb|ADI09655.1| O-methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 391

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQ 80
           + E+    DG T +EIG G G  T ++    G   V  +E D 
Sbjct: 110 MIETLDVEDGHTALEIGTGTGYSTALMCHRLGEDNVTTVEVDP 152


>gi|262172380|ref|ZP_06040058.1| protein-L-isoaspartate O-methyltransferase [Vibrio mimicus MB-451]
 gi|261893456|gb|EEY39442.1| protein-L-isoaspartate O-methyltransferase [Vibrio mimicus MB-451]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLALTPETKVLEIGTGSGYQTAVLAKL-VNHVFTVER----IKTLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D  + +    P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWQGWPARGPFDAI 145


>gi|229587296|ref|YP_002860334.1| putative menaquinone biosynthesis methlytransferase related
           [Clostridium botulinum Ba4 str. 657]
 gi|229260357|gb|ACQ51394.1| putative menaquinone biosynthesis methlytransferase related
           [Clostridium botulinum Ba4 str. 657]
          Length = 259

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           TV+++G G G L              I+++++   I K I++   + +E    DAL +  
Sbjct: 50  TVLDLGCGTGTLIMKFEEKECYNCFGIDRNEESIEIAKKIAADKKSLVEFKAGDALNMSC 109

Query: 110 EKFFN 114
            K  +
Sbjct: 110 GKDID 114


>gi|195020177|ref|XP_001985139.1| GH16899 [Drosophila grimshawi]
 gi|193898621|gb|EDV97487.1| GH16899 [Drosophila grimshawi]
          Length = 1713

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 36/171 (21%)

Query: 40   AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK--DQQFFPILKDISSQHPNRL 97
            A ++       +IE+          ++   A  V  IE   D +    +        +  
Sbjct: 1509 AGAASLDSEDQIIEV----------VIERAATPVASIEVSPDHELIEYIIKRIRNQTHNN 1558

Query: 98   EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
             II  D+L  +  K    ++     + +P           IS        + + +  Q++
Sbjct: 1559 TIIN-DSLLAEVSKLTANAAQNSAASWIPNAASP-----LISPKRIYAKIKKMEMPRQRD 1612

Query: 158  VGERITAQKNSPHYGRLSVLTGWRTKATMMFDIS-PHVFFPSPKVTSTVIH 207
                               L  +R     +F +  PH   P PKV S    
Sbjct: 1613 EF-----------------LLWYRAYLEQLFVVEQPHNGCPQPKVKSKEER 1646


>gi|114766797|ref|ZP_01445731.1| hypothetical protein 1100011001324_R2601_11876 [Pelagibaca
           bermudensis HTCC2601]
 gi|114540991|gb|EAU44049.1| hypothetical protein R2601_11876 [Roseovarius sp. HTCC2601]
          Length = 247

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR----KVIVIEKDQQFFPIL 86
           +D  +L   A +  +  G +V+E+G G G     L  LGAR    ++  +E    +  + 
Sbjct: 24  IDPVLL---AATVPAKPGQSVLELGCGAG---PALCCLGARVAGLRLTGLEIQPAYAALA 77

Query: 87  KDISSQHPNRLEIIQDDA 104
           +   +++    E+I+ D 
Sbjct: 78  RRNLAENALTGEVIEGDI 95


>gi|55377130|ref|YP_134980.1| L-isoaspartyl protein carboxyl methyltransferase [Haloarcula
           marismortui ATCC 43049]
 gi|55229855|gb|AAV45274.1| L-isoaspartyl protein carboxyl methyltransferase [Haloarcula
           marismortui ATCC 43049]
          Length = 173

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRL 97
              +G      V++ G G G L+  +  +GA  V+  E+D +F  + +     +   + +
Sbjct: 10  VGKTGVAAADRVLDAGTGTGILSAYMGRIGAD-VVTYEQDPEFAEVARQNMEIAGVADTV 68

Query: 98  EIIQDDA 104
           E+   D 
Sbjct: 69  EVRTGDI 75


>gi|15897719|ref|NP_342324.1| hypothetical protein SSO0818 [Sulfolobus solfataricus P2]
 gi|6015659|emb|CAB57486.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813998|gb|AAK41114.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
          Length = 244

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEI------ 99
            G  V++IGAG G+        GA++V+ +E D +   ++++    +  N + +      
Sbjct: 102 RGKRVLDIGAGIGDSPIYFSIAGAKEVVAVEVDSKKVELMRENLKANSINNVIVVDKGVG 161

Query: 100 IQDDALKVDFEKFFNISSPIRIIA 123
           I+DD   + + K  +   P  +  
Sbjct: 162 IKDDENYISWPKLISNYGPFDVAK 185


>gi|15924604|ref|NP_372138.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927194|ref|NP_374727.1| hypothetical protein SA1442 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268095|ref|YP_001247038.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394163|ref|YP_001316838.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979932|ref|YP_001442191.1| hypothetical protein SAHV_1601 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315244|ref|ZP_04838457.1| hypothetical protein SauraC_03597 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006399|ref|ZP_05145000.2| hypothetical protein SauraM_08020 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257793689|ref|ZP_05642668.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A9781]
 gi|258411012|ref|ZP_05681292.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A9763]
 gi|258420186|ref|ZP_05683141.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A9719]
 gi|258438188|ref|ZP_05689472.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A9299]
 gi|258443651|ref|ZP_05691990.1| O-methyltransferase family 3 [Staphylococcus aureus A8115]
 gi|258446858|ref|ZP_05695012.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A6300]
 gi|258448772|ref|ZP_05696884.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A6224]
 gi|258453591|ref|ZP_05701569.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A5937]
 gi|269203240|ref|YP_003282509.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893117|ref|ZP_06301351.1| O-methyltransferase [Staphylococcus aureus A8117]
 gi|282928248|ref|ZP_06335853.1| O-methyltransferase [Staphylococcus aureus A10102]
 gi|295406736|ref|ZP_06816541.1| O-methyltransferase [Staphylococcus aureus A8819]
 gi|296276725|ref|ZP_06859232.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245682|ref|ZP_06929547.1| O-methyltransferase [Staphylococcus aureus A8796]
 gi|13701412|dbj|BAB42706.1| SA1442 [Staphylococcus aureus subsp. aureus N315]
 gi|14247385|dbj|BAB57776.1| similar to caffeoyl-CoA O-methyltransferase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147741164|gb|ABQ49462.1| O-methyltransferase, family 3 [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946615|gb|ABR52551.1| O-methyltransferase family 3 [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722067|dbj|BAF78484.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787661|gb|EEV26001.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A9781]
 gi|257840162|gb|EEV64626.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A9763]
 gi|257843897|gb|EEV68291.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A9719]
 gi|257848232|gb|EEV72223.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A9299]
 gi|257851057|gb|EEV75000.1| O-methyltransferase family 3 [Staphylococcus aureus A8115]
 gi|257854433|gb|EEV77382.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A6300]
 gi|257858050|gb|EEV80939.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A6224]
 gi|257864322|gb|EEV87072.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus A5937]
 gi|262075530|gb|ACY11503.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590055|gb|EFB95137.1| O-methyltransferase [Staphylococcus aureus A10102]
 gi|282764435|gb|EFC04561.1| O-methyltransferase [Staphylococcus aureus A8117]
 gi|285817296|gb|ADC37783.1| O-methyltransferase family protein [Staphylococcus aureus 04-02981]
 gi|294968483|gb|EFG44507.1| O-methyltransferase [Staphylococcus aureus A8819]
 gi|297177333|gb|EFH36585.1| O-methyltransferase [Staphylococcus aureus A8796]
 gi|312830001|emb|CBX34843.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129895|gb|EFT85885.1| hypothetical protein CGSSa03_02388 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727150|gb|EGG63606.1| O-methyltransferase [Staphylococcus aureus subsp. aureus 21172]
          Length = 212

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           ++D   L  I +     +   ++EIG   G  +    ++     V  IE+++      K 
Sbjct: 34  IVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQ 93

Query: 89  ISS--QHPNRLEIIQDDALK 106
             +     N++ II+ +AL+
Sbjct: 94  NLATYHFENQVRIIEGNALE 113


>gi|258623527|ref|ZP_05718528.1| protein-L-isoaspartate O-methyltransferase [Vibrio mimicus VM573]
 gi|258623791|ref|ZP_05718748.1| protein-L-isoaspartate O-methyltransferase [Vibrio mimicus VM603]
 gi|262164040|ref|ZP_06031779.1| protein-L-isoaspartate O-methyltransferase [Vibrio mimicus VM223]
 gi|258583914|gb|EEW08706.1| protein-L-isoaspartate O-methyltransferase [Vibrio mimicus VM603]
 gi|258584189|gb|EEW08937.1| protein-L-isoaspartate O-methyltransferase [Vibrio mimicus VM573]
 gi|262027568|gb|EEY46234.1| protein-L-isoaspartate O-methyltransferase [Vibrio mimicus VM223]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLALTPETKVLEIGTGSGYQTAVLAKL-VNHVFTVER----IKTLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D  + +    P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWQGWPARGPFDAI 145


>gi|171779487|ref|ZP_02920451.1| hypothetical protein STRINF_01332 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282104|gb|EDT47535.1| hypothetical protein STRINF_01332 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 197

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 76/194 (39%), Gaps = 37/194 (19%)

Query: 5   NKSHSLKTILSHYKIIPKKYMGQNF--LLDLNI-LKKIAE--------SSGSLDGITVIE 53
           + +H ++ +    K+     +GQ+F  L D  +  KK+ +        +     G  +++
Sbjct: 11  DSAHDIQEL----KVTL---LGQSFTFLTDSGVFSKKMVDYGSQVLLNTLDFEKGKILLD 63

Query: 54  IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
           +G G G L   L  +   K  +++ + +   + K  + ++      ++ D  + D  +  
Sbjct: 64  LGCGYGPLGISLAKVQGVKPTMVDINNRAIDLAKQNAQKNG-----VEADIFQSDIYEKV 118

Query: 114 NISSPIRIIANLPYNIGTRLLFNWI-SADTWPPFWESLTLLFQK------------EVGE 160
           N +    II+N P   G +++   I  +  +     +LT++ QK            EV  
Sbjct: 119 NGTFDY-IISNPPIRAGKQVVHTIISESINYLKVGGNLTIVIQKKQGAPSAKAKMEEVFG 177

Query: 161 RITAQKNSPHYGRL 174
            +   K    Y  L
Sbjct: 178 NVEILKRDKGYYIL 191


>gi|162448507|ref|YP_001610874.1| precorrin-6Y C(5,15)-methyltransferase (decarboxylating) [Sorangium
           cellulosum 'So ce 56']
 gi|161159089|emb|CAN90394.1| Precorrin-6Y C(5,15)-methyltransferase (decarboxylating) [Sorangium
           cellulosum 'So ce 56']
          Length = 442

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 8/141 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRL 97
             S        V ++GAG G+++     L    +V  IE D +   I +D    H  + +
Sbjct: 249 IASMTIRPDAVVWDVGAGSGSVSIEAAMLCPLGRVYAIEVDPEGVEICRDNVRAHGVDNV 308

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW--ESLTLLFQ 155
            ++   A     E    +  P  +           ++   +            ++T+   
Sbjct: 309 RVVAGRA----PEALAALEDPDAVFVGGSKGSMEEIVTVALDRLRPGGRLVVNAITMENV 364

Query: 156 KEVGERITAQKNSPHYGRLSV 176
            E    + A+   P    LSV
Sbjct: 365 AETYRALRARGLDPEVTLLSV 385


>gi|22299916|ref|NP_683163.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Thermosynechococcus elongatus BP-1]
 gi|48474450|sp|Q8DGE4|UBIE_THEEB RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|22296101|dbj|BAC09925.1| tll2373 [Thermosynechococcus elongatus BP-1]
          Length = 225

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDISSQHPNRLE 98
            +      G T +++  G G+LT++L     R+  V+  D    P+ +    S H  ++E
Sbjct: 35  VDWLELPQGATALDLCCGTGDLTRLLARRVGRQGRVVGLDFAAAPLAIARQRSDHYPQIE 94

Query: 99  IIQDDALKVDFEK 111
            +Q DAL V F  
Sbjct: 95  WLQGDALAVPFAP 107


>gi|85703403|ref|ZP_01034507.1| protein-L-isoaspartate O-methyltransferase [Roseovarius sp. 217]
 gi|85672331|gb|EAQ27188.1| protein-L-isoaspartate O-methyltransferase [Roseovarius sp. 217]
          Length = 217

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +LD   L K+ ++        V++IG   G  +  ++   A  V+ +E         +  
Sbjct: 61  MLDPRTLAKMLDALEIEGDDLVLDIGPAYGY-SAAVIARMAEAVVGVEDTAAMVEEAQRT 119

Query: 90  SSQ 92
            S+
Sbjct: 120 LSE 122


>gi|146276735|ref|YP_001166894.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17025]
 gi|262825577|sp|A4WQC5|RSMH_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145554976|gb|ABP69589.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17025]
          Length = 331

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G   + LL  GA +VI +++D     + +D +  + +RL ++     ++D
Sbjct: 36  GAGGYARGLLEAGADRVIGVDRDPLALEMAQDWAGAYGDRLRLVAGTFSQLD 87


>gi|330825555|ref|YP_004388858.1| Cyclopropane-fatty-acyl-phospholipid synthase [Alicycliphilus
           denitrificans K601]
 gi|329310927|gb|AEB85342.1| Cyclopropane-fatty-acyl-phospholipid synthase [Alicycliphilus
           denitrificans K601]
          Length = 406

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           +++   S+G   G  V+EIG G G L +M        V  +
Sbjct: 178 VRRALRSAGVQPGNRVLEIGCGWGALAEMAAGEFQAHVTGV 218


>gi|325845163|ref|ZP_08168472.1| ribosomal protein L11 methyltransferase [Turicibacter sp. HGF1]
 gi|325488828|gb|EGC91228.1| ribosomal protein L11 methyltransferase [Turicibacter sp. HGF1]
          Length = 312

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
             V+++G G G L      LG R V  ++ D       K+    +  +  II+ + L +D
Sbjct: 174 QVVVDVGTGSGILAIAASKLGCRLVYAVDLDAMAVIRAKENIEMNHCQNIIIEKNNL-ID 232

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             +  + +  + +      NI   ++ N + 
Sbjct: 233 GVEALSEAPTLMVA-----NILAPIIINMLD 258


>gi|302392080|ref|YP_003827900.1| protein-L-isoaspartate O-methyltransferase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204157|gb|ADL12835.1| protein-L-isoaspartate O-methyltransferase [Acetohalobium
           arabaticum DSM 5501]
          Length = 224

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-FPILKDISS 91
             I+  + E+     G  V+EIG G G          A  V+    D+ +     +D++ 
Sbjct: 70  PYIVGLMTEALQPSSGDKVLEIGTGSG---------YAAAVLAEIVDEVYTVERHQDLAQ 120

Query: 92  QHPNRLEII 100
           Q  +R E++
Sbjct: 121 QAEDRFELL 129


>gi|293376254|ref|ZP_06622497.1| ribosomal protein L11 methyltransferase [Turicibacter sanguinis
           PC909]
 gi|292645146|gb|EFF63213.1| ribosomal protein L11 methyltransferase [Turicibacter sanguinis
           PC909]
          Length = 312

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
             V+++G G G L      LG R V  ++ D       K+    +  +  II+ + L +D
Sbjct: 174 QVVVDVGTGSGILAIAASKLGCRLVYAVDLDAMAVIRAKENIEMNHCQNIIIEKNNL-ID 232

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
             +  + +  + +      NI   ++ N + 
Sbjct: 233 GVEALSEAPTLMVA-----NILAPIIINMLD 258


>gi|288960113|ref|YP_003450453.1| methyltransferase [Azospirillum sp. B510]
 gi|288912421|dbj|BAI73909.1| methyltransferase [Azospirillum sp. B510]
          Length = 256

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 8/100 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDI 89
           +D   L  I  +S    G  V+++G G G     L   +    V+ +E+        +  
Sbjct: 38  IDPVFLAAITAASA---GERVLDVGTGTGAAALCLAVRVPGVAVVGLEQRADACAFARRN 94

Query: 90  SS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++      R+ +++ D L     +        R++ N PY
Sbjct: 95  AALTGVAERVTVVEGDLLA--PPETVGGGGFDRVMMNPPY 132


>gi|283477517|emb|CAY73433.1| Uncharacterized protein yfiC [Erwinia pyrifoliae DSM 12163]
          Length = 245

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKD--ISSQHPNRLE 98
           +   +    ++IG+G G +  ML    A +V    +E D+      ++   +S  P+++ 
Sbjct: 40  APVANVQRALDIGSGSGLIALMLAQRTADRVHIDAVELDEAAALQAQENVAASPWPDKVR 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + Q D ++              I++N PY
Sbjct: 100 VQQADIVEWTQRC---EHRYSLIVSNPPY 125


>gi|257458627|ref|ZP_05623762.1| methyltransferase type 11 [Treponema vincentii ATCC 35580]
 gi|257444061|gb|EEV19169.1| methyltransferase type 11 [Treponema vincentii ATCC 35580]
          Length = 217

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALK 106
             +++EIGAG G  + +L     R   V++        L K    +H   +  I+ D L+
Sbjct: 50  DSSILEIGAGTGRFS-LLFAAACRSYTVVDLSPAMLQQLTKKAEREHITNITAIEGDFLQ 108

Query: 107 VDFEKFFN 114
                 F+
Sbjct: 109 APISGTFD 116


>gi|238897587|ref|YP_002923266.1| tRNA (m7G46) methyltransferase, SAM-dependent [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465344|gb|ACQ67118.1| tRNA (m7G46) methyltransferase, SAM-dependent [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 241

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 48/170 (28%), Gaps = 18/170 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNL--TQMLLTLGARKVIVIEKDQQFFP 84
           QN L+D   L +            V+EIG G G+   T   L      + V         
Sbjct: 44  QNSLIDTTQLFR-------RKAPLVLEIGFGMGDSLVTTATLNPEQDFLGVEVHIPGIGA 96

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFN---------ISSPIRIIANLPYNIGTRLLF 135
            L+   + H   + II  DA++V      +            P     +    I  R   
Sbjct: 97  CLRSAHAAHVTNVRIICHDAVEVLKHMIADHSLEKVQLFFPDPWHKARHHKRRIVQRPFL 156

Query: 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185
             +        W  +   +Q      +        Y  LSV   +  +  
Sbjct: 157 ELVKRKLKVGGWCHMATDWQPYAEHMLKVISTIDGYKNLSVSEDYVERPE 206


>gi|227829569|ref|YP_002831348.1| hypothetical protein LS215_0616 [Sulfolobus islandicus L.S.2.15]
 gi|227456016|gb|ACP34703.1| conserved hypothetical protein [Sulfolobus islandicus L.S.2.15]
          Length = 207

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQ 101
            G  V++IGAG G+        GA++++ +E D++   +++D    +  N + I+ 
Sbjct: 102 KGKRVLDIGAGIGDSPIYFSIAGAKEIVAVEIDKRKVELMRDNLKVNGINNVTIVD 157


>gi|260798206|ref|XP_002594091.1| hypothetical protein BRAFLDRAFT_68467 [Branchiostoma floridae]
 gi|229279324|gb|EEN50102.1| hypothetical protein BRAFLDRAFT_68467 [Branchiostoma floridae]
          Length = 242

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK--DISSQHPNR 96
           I      ++G T++E+GAG G  T  L    A+ V  ++      P ++  +  + H   
Sbjct: 46  ILSLLPGIEGKTILELGAGIGRYTAPLAQQ-AKHVTAVDF---MEPFIRKNEEVNGHHKN 101

Query: 97  LEIIQDDALKVDFEK 111
           +  +Q D  K++   
Sbjct: 102 VRFMQADVTKLEMPP 116


>gi|149174358|ref|ZP_01852985.1| cyclopropane-fatty-acyl-phospholipid synthase [Planctomyces maris
           DSM 8797]
 gi|148846903|gb|EDL61239.1| cyclopropane-fatty-acyl-phospholipid synthase [Planctomyces maris
           DSM 8797]
          Length = 435

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           L ++           ++EIG G G L          +V      ++ + +  +   ++  
Sbjct: 183 LDRVCRHLNLQPHDHLLEIGTGWGGLALYAAQNYGCRVTTTTISREQYHLAAERIDAAGL 242

Query: 94  PNRLEIIQDD 103
             +++++  D
Sbjct: 243 SGKVKLLLTD 252


>gi|149177799|ref|ZP_01856399.1| conserved hypothetical membrane-spanning protein [Planctomyces
           maris DSM 8797]
 gi|148843449|gb|EDL57812.1| conserved hypothetical membrane-spanning protein [Planctomyces
           maris DSM 8797]
          Length = 976

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           I + +G   G    ++G G G L   L T    ++I IE D +   + +   + 
Sbjct: 415 IIKRTGIEKGYC-FDVGCGDGALAYELATRTQLRIIAIEADPELVALARQKLTA 467


>gi|120556562|ref|YP_960913.1| SAM-dependent methyltransferase [Marinobacter aquaeolei VT8]
 gi|120326411|gb|ABM20726.1| SAM-dependent methyltransferase [Marinobacter aquaeolei VT8]
          Length = 414

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 42  SSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           ++     G  V++   G G+L + L   GA +V   E + +       ++  + + + + 
Sbjct: 129 AAAISPLGYPVLDWCCGKGHLGRTLARRGAMEVTGFEWNPELVTDGNRLAEHYGDPVRLS 188

Query: 101 QDDAL 105
             D +
Sbjct: 189 HQDVM 193


>gi|92117339|ref|YP_577068.1| protein-L-isoaspartate O-methyltransferase [Nitrobacter
           hamburgensis X14]
 gi|91800233|gb|ABE62608.1| protein-L-isoaspartate O-methyltransferase [Nitrobacter
           hamburgensis X14]
          Length = 217

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  + E     D   V+EIG G G     +L+   R+V+ IE+ +      +    Q
Sbjct: 66  PFVVAYMTERLELRDDHRVLEIGTGSGY-QAAILSRLCREVVTIERFRVLADRARARLEQ 124

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANL---PYNIGTRLLFNWISADTWPPFWE 148
              + +E++  D    D          I + A +   P  +  R+  + +      P   
Sbjct: 125 LDCDNVEVMLGDG--FDIPAGAGQFDRIMVTAAMEQIPDALTARIEPDGLLIAPVGPHNG 182

Query: 149 SLTLLFQKEV 158
             TL+  +  
Sbjct: 183 RQTLMLLRRT 192


>gi|85374234|ref|YP_458296.1| cyclopropane-fatty-acyl-phospholipid synthase [Erythrobacter
           litoralis HTCC2594]
 gi|84787317|gb|ABC63499.1| cyclopropane-fatty-acyl-phospholipid synthase [Erythrobacter
           litoralis HTCC2594]
          Length = 422

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  + +     +G T++EIG G G L Q     G R   +   D      L         
Sbjct: 194 IDAVLDRLDLGEGETMLEIGCGWGTLAQAAAERGTRVDAISLSD----EQLAWAREGASE 249

Query: 96  RLEIIQDDALKVDFE 110
           +++ ++ D    D  
Sbjct: 250 QVQFLKQDYRDTDGP 264


>gi|325959931|ref|YP_004291397.1| type 12 methyltransferase [Methanobacterium sp. AL-21]
 gi|325331363|gb|ADZ10425.1| Methyltransferase type 12 [Methanobacterium sp. AL-21]
          Length = 261

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E+       TV ++G G G L+       A KV+ +E ++    I +       N +E++
Sbjct: 24  EAIKEKSKGTVFDLGTGSGVLSSW-AAQYADKVVAVEINRTTSKIAQRNLEAF-NNVEVV 81

Query: 101 QDDALKVDFEKFFNI 115
             DA K  F    ++
Sbjct: 82  NADASKYQFSTKADV 96


>gi|323699008|ref|ZP_08110920.1| Methyltransferase type 11 [Desulfovibrio sp. ND132]
 gi|323458940|gb|EGB14805.1| Methyltransferase type 11 [Desulfovibrio desulfuricans ND132]
          Length = 257

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 6/135 (4%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            ++++I        G TV+++G G G  T  +    AR+V  ++       IL+      
Sbjct: 35  GVMREIRAHGVDFRGATVLDVGCGSGMYTIRIA-REARRVTALDVSDVMLDILR----AD 89

Query: 94  PNRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              L++   D ++ ++  F  + +  I   +  P           +        +     
Sbjct: 90  AEALKLDNIDYVRSEWMDFERDETFDIVFCSMTPAIQSEASRRKLLRHAHGKTVFMGFAG 149

Query: 153 LFQKEVGERITAQKN 167
             +  V   + A   
Sbjct: 150 RMRSNVMAGLYAHHG 164


>gi|323449176|gb|EGB05066.1| hypothetical protein AURANDRAFT_31452 [Aureococcus anophagefferens]
          Length = 252

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 31  LDLNILKKIA----ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
              ++  +I      S G ++G  V+++G G G L+      GA +V+ ++ D       
Sbjct: 30  TSAHLAAQIVLCAARSFGDVEGQVVLDLGCGTGILSCACALAGAARVVGVDVDDTALAAA 89

Query: 87  KDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            +   +      +++++ D       +   +  P   + N P+
Sbjct: 90  AENLERCSCEADVDLVRGDVDAAPPLRLAAV--PDICVMNPPF 130


>gi|319892648|ref|YP_004149523.1| Methyltransferase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162344|gb|ADV05887.1| Methyltransferase [Staphylococcus pseudintermedius HKU10-03]
          Length = 240

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I ++        V++IG G G LTQ   T  A +V+ ++       +L  ++ Q  +
Sbjct: 23  LDLIQQTLQQQKVSRVLDIGCGTGTLTQH-FTQFADEVMGMDL---SVEMLV-LAKQKSS 77

Query: 96  RLEIIQDDALKVDFEKFFNI 115
           +++ I+ D    +    F++
Sbjct: 78  QVQWIEGDMSDFNLNTDFDL 97


>gi|313672691|ref|YP_004050802.1| hypothetical protein Calni_0728 [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939447|gb|ADR18639.1| protein of unknown function Met10 [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 245

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILK 87
           F  D  +L    +         VIEIGAG G ++ +L       K+  +E  ++ + +L 
Sbjct: 26  FTTDSILLAGFVK---DTTYKKVIEIGAGTGIISVLLAKFFKIEKIYAVEIQKESYELLC 82

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                +  +  II  +    D ++F    +   II+N PY
Sbjct: 83  KTIEVNNLQEIIIPVNI---DVKEFKPRENVDMIISNPPY 119


>gi|313887799|ref|ZP_07821479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846142|gb|EFR33523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 443

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L K+A          V ++ +G G +TQ+L    A+KVI +E  ++     ++ +  + 
Sbjct: 286 VLYKMAREKIDAKDKLVFDLYSGTGTITQVLAES-AKKVIGVEIVEEAVEAARENAKLNG 344

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            + +E I  D LKV  +   + +  + ++      I  + +   I  D     + S 
Sbjct: 345 IDNVEFIASDVLKVLDD--LDKNPDLIVLDPPREGINPKAIDKIIDFDPEKFLYISC 399


>gi|308512437|ref|XP_003118401.1| hypothetical protein CRE_00725 [Caenorhabditis remanei]
 gi|308239047|gb|EFO82999.1| hypothetical protein CRE_00725 [Caenorhabditis remanei]
          Length = 7514

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 28   NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            N L     L ++A++    D   V+EIG   G L+ +L    ++ V+++
Sbjct: 6020 NHLTSPINLDRVADAIIKSDVDIVVEIGP-TGVLSNLLTKKNSKTVVIL 6067


>gi|167747046|ref|ZP_02419173.1| hypothetical protein ANACAC_01758 [Anaerostipes caccae DSM 14662]
 gi|167654006|gb|EDR98135.1| hypothetical protein ANACAC_01758 [Anaerostipes caccae DSM 14662]
          Length = 263

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL  +  + K            V+EIGAG G  +  L   G   V  +E  +    + + 
Sbjct: 29  FLTTMRYIDK-----YIKPDDRVLEIGAGTGRYSHALARQG-YAVDAVELVEHNIEMFRK 82

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
                   + + Q +AL  D   F +    I ++    Y++ T+
Sbjct: 83  NIQP-DETITVTQGNAL--DLSDFSDNQYDITLLLGPLYHLYTK 123


>gi|148658542|ref|YP_001278747.1| type 11 methyltransferase [Roseiflexus sp. RS-1]
 gi|148570652|gb|ABQ92797.1| Methyltransferase type 11 [Roseiflexus sp. RS-1]
          Length = 269

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/56 (12%), Positives = 20/56 (35%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
          + +++ ++        V+E   G G   ++ +         IE+D      ++   
Sbjct: 38 LTRRMLDTLAIGPNDHVVEFAPGLGVTARLTIARQPASYTGIERDAAAATAVQKFL 93


>gi|15615094|ref|NP_243397.1| hypothetical protein BH2531 [Bacillus halodurans C-125]
 gi|10175151|dbj|BAB06250.1| BH2531 [Bacillus halodurans C-125]
          Length = 220

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVD 108
           V+++G G G L    +   A  +  ++  +Q     ++   +H    RL ++Q DA  + 
Sbjct: 44  VLDVGCGTGRLLARGVHEAAH-LAGVDLSKQMVLATEERLHEHKQCGRLTVVQGDAYDLP 102

Query: 109 F-EKFFNISSPIRIIANLP 126
           F ++ F++     ++  LP
Sbjct: 103 FADESFDVCLSTCVMFLLP 121


>gi|87309024|ref|ZP_01091162.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Blastopirellula
           marina DSM 3645]
 gi|87288367|gb|EAQ80263.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Blastopirellula
           marina DSM 3645]
          Length = 262

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
            G   G  V+EIG G GN    L  L     KVI ++       + +   ++    +++E
Sbjct: 81  LGLKPGDRVLEIGFGTGNSMIDLAKLVGPTGKVIGVDISPGMQKVAEKKIAKTDLGDQIE 140

Query: 99  IIQDDALKVDFEK 111
           +   DA  +DF  
Sbjct: 141 LHIGDARNLDFPP 153


>gi|326577374|gb|EGE27258.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           O35E]
          Length = 310

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 8/97 (8%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           ++  L    VI+ G G G L    L LGAR+V+ ++ D Q   +L    +   N ++   
Sbjct: 157 AAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQ--AVLATRQNAALNGVDDRL 214

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
              L  +F+ +   +  +  +      I   +L   +
Sbjct: 215 LAFLPAEFDDYRTQNPQLADV------ITANILAKPL 245


>gi|323464314|gb|ADX76467.1| putative methyltransferase [Staphylococcus pseudintermedius ED99]
          Length = 240

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I ++        V++IG G G+LTQ   T  A +V+ ++       +L  ++ Q  +
Sbjct: 23  LDLIQQTLQQQKVSRVLDIGCGTGSLTQH-FTQFADEVMGMDL---SVEMLV-LAKQKSS 77

Query: 96  RLEIIQDDALKVDFEKFFNI 115
           +++ I+ D    +    F++
Sbjct: 78  QVQWIEGDMSDFNLNTDFDL 97


>gi|319745948|gb|EFV98231.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           ATCC 13813]
          Length = 317

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TVI++G G G L+ +   LGA+ +   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIVSSLLGAKDIYAFDLDDVAVRVAQENIDMNPGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|225581217|gb|ACN94784.1| GA18092 [Drosophila miranda]
          Length = 367

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 23/111 (20%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAES------------SGSLDGITVIEIGA 56
            +++     +I+  K +G   LLD   L+ IAES              + +G  +  +G 
Sbjct: 147 EVRSPFQKIQILHSKTLGNMLLLDE--LQNIAESDLIYTETLMGRGIENYEGKEICILGG 204

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
           G G L   LL    + V+++E D        ++  +  N+ L  I  D L+
Sbjct: 205 GDGALLYELLKENPKHVVMLEID--------ELVMEACNKYLNSICGDVLE 247


>gi|260433199|ref|ZP_05787170.1| menaquinone biosynthesis methyltransferase UbiE [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417027|gb|EEX10286.1| menaquinone biosynthesis methyltransferase UbiE [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 265

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           ++     G  ++++G G G LT  L        +V  ++         +   ++  + ++
Sbjct: 30  DAIAPAPGEAILDLGCGTGLLTAELARAVGPQGQVTGLDTSPDMLAAAQGRCNEF-DHVD 88

Query: 99  IIQDDALKVDFEK 111
           +++  A  +    
Sbjct: 89  LVEGSAFDMPVPD 101


>gi|302528885|ref|ZP_07281227.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302437780|gb|EFL09596.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 203

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
            ++ + +      TV+ IG GPG       +  A +VI +E   Q   +  D      +R
Sbjct: 47  HRVVDLARLEPDETVLVIGPGPGV-GLDAASKLAGEVIGVEPSPQMRALCTDRCG---DR 102

Query: 97  LEIIQDDALKVDFEK 111
            E+   DA +   E 
Sbjct: 103 AEVRAGDAARTGCED 117


>gi|257054873|ref|YP_003132705.1| methyltransferase family protein [Saccharomonospora viridis DSM
           43017]
 gi|256584745|gb|ACU95878.1| methyltransferase family protein [Saccharomonospora viridis DSM
           43017]
          Length = 246

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 62/188 (32%), Gaps = 9/188 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E      G TV+E+GAG G         G  + +V + D      LK+  +  P  +E+ 
Sbjct: 40  ELIRPHCGRTVLEVGAGLGEFAAG--FTGVDRYVVTDVDAGAVQKLKERFAHRPE-VEVQ 96

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRL--LFNWISADTWPPFWESLTLLFQKEV 158
           Q D    D     +      +  N+  +I   +  L     + T           +Q+  
Sbjct: 97  QYDI---DGTTTLSEPVETLVAINVLEHIADDISALRQLSRSLTANGNMVLFVPGYQQLY 153

Query: 159 GERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC 218
           GE      +   Y   ++    R +A ++ D++  V F         +       P P  
Sbjct: 154 GEFDRRVGHHRRYTPTTIAATAR-EAGLVVDVARPVNFLGAFAWWAAVRKGGAKTPNPRL 212

Query: 219 LESLKKIT 226
           +    +  
Sbjct: 213 VSLYDRFV 220


>gi|254524921|ref|ZP_05136976.1| RNA methyltransferase, RsmD family [Stenotrophomonas sp. SKA14]
 gi|219722512|gb|EED41037.1| RNA methyltransferase, RsmD family [Stenotrophomonas sp. SKA14]
          Length = 192

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 14/114 (12%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDAL 105
           G  V+++ AG G L    ++ GA    ++E+D Q    L    ++    +++ ++Q DAL
Sbjct: 52  GARVLDLFAGSGALGLEAVSRGAAHATLVERDAQLGRNLSAAVAKLQAVDQVTVVQADAL 111

Query: 106 KV------DFEKFFNISSPIR------IIANLPYNIGTRLLFNWISADTWPPFW 147
           +              I  P        ++A LP ++         S     P  
Sbjct: 112 RWLQSAPAQQADLVFIDPPFADGLWQDVLAQLPRHLAADAWLYLESPAGHVPVL 165


>gi|170093345|ref|XP_001877894.1| protein arginine N-methyltransferase [Laccaria bicolor S238N-H82]
 gi|164647753|gb|EDR11997.1| protein arginine N-methyltransferase [Laccaria bicolor S238N-H82]
          Length = 343

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
          I  +     G TV+++G G G L+      GA+ V+ I+ 
Sbjct: 54 IINNPHLFKGKTVLDVGCGTGILSMFAAKAGAKHVVGIDM 93


>gi|145590481|ref|YP_001152483.1| methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514]
 gi|145282249|gb|ABP49831.1| Methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514]
          Length = 184

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           G  V+EIG G G L + L   G +    +  D    P+LK    + P    I
Sbjct: 42 PGNYVLEIGPGVGALLRKLEQGGYK---AVGLDA-SPPMLKRAQRRAPGVSTI 90


>gi|187477073|ref|YP_785097.1| hypothetical protein BAV0564 [Bordetella avium 197N]
 gi|115421659|emb|CAJ48169.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 206

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 8/137 (5%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQD 102
           G      V+++ AG G L     + G  +V ++E+D+     L+ +  +     + I   
Sbjct: 52  GEFRDKRVLDLFAGSGALGLEAASRGVAQVQMVERDRGAVSALRSLRDKLKAEHIRIHAG 111

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIG-----TRLLFNWISADTWPPFWESLTLLFQKE 157
           DAL     +  + S    ++ + P+  G       LL   +  +              + 
Sbjct: 112 DALAA--LERMDASRFDLVLLDPPFGQGWLARLWPLLPAVLDENALVYVESETPAEAPEG 169

Query: 158 VGERITAQKNSPHYGRL 174
                  +  + HY  L
Sbjct: 170 FDVLREGKAGAVHYCLL 186


>gi|56696241|ref|YP_166598.1| FkbM family methyltransferase [Ruegeria pomeroyi DSS-3]
 gi|56677978|gb|AAV94644.1| methyltransferase, FkbM family [Ruegeria pomeroyi DSS-3]
          Length = 228

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            ++    G  VI+ GA  G++T +L   GA  V   E D   F +L++   +  N + + 
Sbjct: 36  AAAMLRPGDVVIDCGANVGDVTAVLSATGA-TVHCFEPDPYAFSLLEERFGEATN-VHLH 93

Query: 101 QDDA 104
              A
Sbjct: 94  NQAA 97


>gi|169773359|ref|XP_001821148.1| S-adenosyl-methionine-sterol-C- methyltransferase [Aspergillus
           oryzae RIB40]
 gi|83769009|dbj|BAE59146.1| unnamed protein product [Aspergillus oryzae]
          Length = 389

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK---DISSQH 93
           + IAE  G   G  V+++G G G +   +       V  +  D       +   +     
Sbjct: 147 ESIAEHIGLKPGDKVLDLGCGRGRVAAHMTQYSGAHVTGLNIDPNQIAQARSYNEKLGFK 206

Query: 94  PNRLEIIQDDALKVDFEK 111
            NR  +   ++L + FE 
Sbjct: 207 DNRFIVQDFNSLPLPFED 224


>gi|37523875|ref|NP_927252.1| hypothetical protein glr4306 [Gloeobacter violaceus PCC 7421]
 gi|35214881|dbj|BAC92247.1| glr4306 [Gloeobacter violaceus PCC 7421]
          Length = 400

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 13/83 (15%)

Query: 25  MGQNFLLDLNILKKIAESSGSLD---GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +GQ        ++ +   +       G  V++I +G G  +Q L   GA +V+ +E D +
Sbjct: 46  LGQ--------IEHMVRYAFVAPFALGKKVLDIASGSGYGSQYLALQGATEVVAVEIDSE 97

Query: 82  FFPILKDISSQHPNRLEIIQDDA 104
                +   S    R   +Q DA
Sbjct: 98  AIKYAQKHHSHPAVRF--VQSDA 118


>gi|84684623|ref|ZP_01012524.1| methyltransferase, UbiE/COQ5 family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667602|gb|EAQ14071.1| methyltransferase, UbiE/COQ5 family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 204

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
              + V+EIG G GN T        R    ++         K+     P+ +  +  D  
Sbjct: 38  RPDMDVLEIGCGSGN-TGRRHAPLVRSYTAMDISSAMLEAAKE-QGPIPDNMRFVHADFD 95

Query: 106 KVDFEK 111
           + D   
Sbjct: 96  RADVAP 101


>gi|312793405|ref|YP_004026328.1| methyltransferase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180545|gb|ADQ40715.1| methyltransferase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 184

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEK 111
           AG GN+    L+ G ++V  +EKD +   ++K+         R  II+ D LK    K
Sbjct: 51  AGTGNVGIEFLSRGVKEVTFVEKDMRCINLIKENLKNLDLLKRARIIKGDVLKFLKSK 108


>gi|269114910|ref|YP_003302673.1| DNA methylase [Mycoplasma hominis]
 gi|268322535|emb|CAX37270.1| DNA methylase [Mycoplasma hominis ATCC 23114]
          Length = 260

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                ++E+G   G L+  +     R  +  IE   +   + +   I ++  N++ +I+ 
Sbjct: 42  RKVRNILEVGTNNGALSIFIAARDKRLNIDAIEIQSKAVELARKNIILNKLENQINLIEG 101

Query: 103 DALKVDFEKFFNISSPIR-----IIANLPYN 128
           D      +K ++  + +      I+AN PY 
Sbjct: 102 DFRMWANQKAYDCGNKLAKKYDLIVANPPYY 132


>gi|301118999|ref|XP_002907227.1| cyclopropane-fatty-acyl-phospholipid synthase [Phytophthora
           infestans T30-4]
 gi|262105739|gb|EEY63791.1| cyclopropane-fatty-acyl-phospholipid synthase [Phytophthora
           infestans T30-4]
          Length = 410

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 31  LDLNILKK-----IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            DL+  ++     IA+      G+ V+EIG G G L   L       V  I  
Sbjct: 169 HDLDAAQRNKLHLIAKKLKLEPGMRVLEIGCGWGGLGCFLAKEYGVHVTGITI 221


>gi|257068783|ref|YP_003155038.1| tRNA (adenine-58-N(1)-) methyltransferase [Brachybacterium faecium
           DSM 4810]
 gi|256559601|gb|ACU85448.1| tRNA (adenine-58-N(1)-) methyltransferase [Brachybacterium faecium
           DSM 4810]
          Length = 359

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
               G  V+E G G G LT  LL        V  IE+ + F  + ++     
Sbjct: 124 DIFPGARVLEAGVGSGGLTTALLRAVGPEGSVHSIERREDFAEVARENVETF 175


>gi|257425739|ref|ZP_05602163.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428399|ref|ZP_05604797.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431037|ref|ZP_05607416.1| O-methyltransferase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433723|ref|ZP_05610081.1| O-methyltransferase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436638|ref|ZP_05612682.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282911251|ref|ZP_06319053.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914419|ref|ZP_06322205.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916883|ref|ZP_06324641.1| O-methyltransferase [Staphylococcus aureus subsp. aureus D139]
 gi|282919389|ref|ZP_06327124.1| O-methyltransferase [Staphylococcus aureus subsp. aureus C427]
 gi|282924714|ref|ZP_06332382.1| O-methyltransferase [Staphylococcus aureus subsp. aureus C101]
 gi|283770688|ref|ZP_06343580.1| O-methyltransferase [Staphylococcus aureus subsp. aureus H19]
 gi|293503494|ref|ZP_06667341.1| O-methyltransferase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510511|ref|ZP_06669217.1| O-methyltransferase [Staphylococcus aureus subsp. aureus M809]
 gi|293531051|ref|ZP_06671733.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257271433|gb|EEV03579.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275240|gb|EEV06727.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278240|gb|EEV08882.1| O-methyltransferase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281816|gb|EEV11953.1| O-methyltransferase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283989|gb|EEV14112.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313549|gb|EFB43944.1| O-methyltransferase [Staphylococcus aureus subsp. aureus C101]
 gi|282317199|gb|EFB47573.1| O-methyltransferase [Staphylococcus aureus subsp. aureus C427]
 gi|282319370|gb|EFB49722.1| O-methyltransferase [Staphylococcus aureus subsp. aureus D139]
 gi|282321600|gb|EFB51925.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324946|gb|EFB55256.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|283460835|gb|EFC07925.1| O-methyltransferase [Staphylococcus aureus subsp. aureus H19]
 gi|290920319|gb|EFD97385.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095160|gb|EFE25425.1| O-methyltransferase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466875|gb|EFF09395.1| O-methyltransferase [Staphylococcus aureus subsp. aureus M809]
 gi|312437918|gb|ADQ76989.1| O-methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 212

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           ++D   L  I +     +   ++EIG   G  +    ++     V  IE+++      K 
Sbjct: 34  IVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQ 93

Query: 89  ISSQH--PNRLEIIQDDALK 106
             + H   N++ II+ +AL+
Sbjct: 94  NLATHHFENQVRIIEGNALE 113


>gi|182434044|ref|YP_001821763.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178462560|dbj|BAG17080.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 275

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 7/67 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            S G+  G   ++IGAG G +++ LL   G   V+ +++D +F      +S++    L++
Sbjct: 47  RSLGAGPGWRCLDIGAGTGTVSRRLLEEAGVANVLAVDRDVRF------LSARPVPGLDV 100

Query: 100 IQDDALK 106
           +Q D  +
Sbjct: 101 LQADITR 107


>gi|170745084|ref|YP_001766541.1| ABC transporter related [Methylobacterium radiotolerans JCM 2831]
 gi|170658685|gb|ACB27739.1| ABC transporter related [Methylobacterium radiotolerans JCM 2831]
          Length = 899

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           ++  ++       VI++G G GNL   ++  G  +V+   +  +  P L++      N
Sbjct: 839 RVVAAA-----DHVIDVGPGAGNLGGTIVAAGRPEVVARAQASRTAPYLREELEADAN 891


>gi|149185079|ref|ZP_01863396.1| hypothetical protein ED21_18537 [Erythrobacter sp. SD-21]
 gi|148831190|gb|EDL49624.1| hypothetical protein ED21_18537 [Erythrobacter sp. SD-21]
          Length = 195

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  IA++    +   V++IG G G L   L          +E D                
Sbjct: 7   LAAIADAI--SENARVLDIGCGDGALLANLRHTKQVDARGMEIDGACVER------CVAQ 58

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            L ++Q DA + D   +        +++         
Sbjct: 59  GLSVVQGDANR-DLADYPEKGFDYTVLSQTLQTATRP 94


>gi|86742002|ref|YP_482402.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. CcI3]
 gi|86568864|gb|ABD12673.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. CcI3]
          Length = 431

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAG--PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
             +   + E +    G+ ++EIG+G     L   L+   A +V  ++ D+      + + 
Sbjct: 87  PQVQAYMLEQAAITPGMRILEIGSGGYNAALIAELVG-PAGQVTTVDIDKDVIDRARHLL 145

Query: 91  SQ-HPNRLEIIQDDA 104
           +Q    ++ ++  DA
Sbjct: 146 AQVGYPQVNVVLADA 160


>gi|87199147|ref|YP_496404.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444]
 gi|123736248|sp|Q2G9A3|RSMH_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
          AltName: Full=16S rRNA m(4)C1402 methyltransferase;
          AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
          RsmH
 gi|87134828|gb|ABD25570.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444]
          Length = 329

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            +L+++  +     G  +++   G G  T+ LL  GA  V   ++D      
Sbjct: 13 PVLLEEVVAALDPKPGDLIVDATFGAGGYTRRLLDAGA-TVHAFDRDPDAIAA 64


>gi|15898693|ref|NP_343298.1| hypothetical protein SSO1898 [Sulfolobus solfataricus P2]
 gi|284175874|ref|ZP_06389843.1| hypothetical protein Ssol98_14628 [Sulfolobus solfataricus 98/2]
 gi|13815158|gb|AAK42088.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261603182|gb|ACX92785.1| Methyltransferase type 11 [Sulfolobus solfataricus 98/2]
          Length = 190

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 29 FLLD-LNILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
          FL+   N   KI    S    +  T++++G GPG  T +L  +  + V  I+ D++    
Sbjct: 23 FLVSSPN---KIISRFSEYLKEDYTIVDLGCGPGFFTTVLARM-VKTVYAIDPDERAISK 78

Query: 86 LKDISSQ 92
          LK+   +
Sbjct: 79 LKEKVQK 85


>gi|91977037|ref|YP_569696.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris BisB5]
 gi|91683493|gb|ABE39795.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris BisB5]
          Length = 409

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHP 94
           +++AE+     G  ++EIG G G   +        +V+ +   ++     ++    +   
Sbjct: 182 QRLAEAIDLRPGQKLLEIGCGWGGFAEYAAKNFDARVVGLTISKEQRDFAQERMQRAGLA 241

Query: 95  NRLEIIQDD 103
           +++EI   D
Sbjct: 242 DKVEIRLQD 250


>gi|125978661|ref|XP_001353363.1| GA18092 [Drosophila pseudoobscura pseudoobscura]
 gi|195160497|ref|XP_002021112.1| GL25003 [Drosophila persimilis]
 gi|54642121|gb|EAL30870.1| GA18092 [Drosophila pseudoobscura pseudoobscura]
 gi|194118225|gb|EDW40268.1| GL25003 [Drosophila persimilis]
          Length = 367

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 23/111 (20%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAES------------SGSLDGITVIEIGA 56
            +++     +I+  K +G   LLD   L+ IAES              + +G  +  +G 
Sbjct: 147 EVRSPFQKIQILHSKTLGNMLLLDE--LQNIAESDLIYTETLMGRGIENYEGKEICILGG 204

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
           G G L   LL    + V+++E D        ++  +  N+ L  I  D L+
Sbjct: 205 GDGALLYELLKENPKHVVMLEID--------ELVMEACNKYLNSICGDVLE 247


>gi|329766099|ref|ZP_08257658.1| methyltransferase type 11 [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137370|gb|EGG41647.1| methyltransferase type 11 [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 268

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 17/164 (10%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF--FPILKDISSQHPN 95
           K+ E      G +V+++  G G +T+ +      K  V+  D       I K  +    N
Sbjct: 28  KLVELVNVNSGDSVLDLACGTGVVTKKIRDKVGNKGYVVGADASITVIKIAKKWNGAKSN 87

Query: 96  RLEIIQDDALKVDFEKFFNI----------SSPIRIIANLPYNI--GTRLLFNWISADTW 143
            L  +  DA K +F   F+I           +  + + N+  ++     L  +       
Sbjct: 88  -LNFVNMDAEKFNFYHEFDIITCQYALFFFPNAQKALKNMRNSLKKTGTLGVSVHGHKDK 146

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
            PF+ +++    K + + I     SP   R         +    
Sbjct: 147 VPFFSNISDAITKFIPDYI--PPGSPDMDRFGTKIALHNEIRKA 188


>gi|302530772|ref|ZP_07283114.1| predicted protein [Streptomyces sp. AA4]
 gi|302439667|gb|EFL11483.1| predicted protein [Streptomyces sp. AA4]
          Length = 245

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
               V+++ AG G LT+ L+ LG R V  +E D      L       P  L
Sbjct: 37 RPVRDVLDLAAGTGKLTEGLVALG-RSVTAVEPDPGMLAELSRRLPDVPALL 87


>gi|326774571|ref|ZP_08233836.1| Methyltransferase type 12 [Streptomyces cf. griseus XylebKG-1]
 gi|326654904|gb|EGE39750.1| Methyltransferase type 12 [Streptomyces cf. griseus XylebKG-1]
          Length = 275

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 7/67 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            S G+  G   ++IGAG G +++ LL   G   V+ +++D +F      +S++    L++
Sbjct: 47  RSLGAGPGWRCLDIGAGTGTVSRRLLEEAGVANVLAVDRDVRF------LSARPVPGLDV 100

Query: 100 IQDDALK 106
           +Q D  +
Sbjct: 101 LQADITR 107


>gi|291287026|ref|YP_003503842.1| Methyltransferase type 11 [Denitrovibrio acetiphilus DSM 12809]
 gi|290884186|gb|ADD67886.1| Methyltransferase type 11 [Denitrovibrio acetiphilus DSM 12809]
          Length = 246

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 14/141 (9%)

Query: 36  LKKIAESSGSLD----GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS 90
           ++++  +  +         ++EIG G G  T  L       +   ++  Q   P+LK+  
Sbjct: 22  IQRMVAACLAEKLSSGHSNILEIGTGTGVYTDELHKKYPDARTTCVDISQ---PLLKEAM 78

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            +HP+ L  I  D  ++     F++   SS ++  +N   +I    +   +       F 
Sbjct: 79  GKHPDNLY-ICADGERLPLSCGFDLITGSSTLQWFSNPAESI--PDMLKLLKPGGRFGFS 135

Query: 148 ESLTLLFQKEVGERITAQKNS 168
                 F +           S
Sbjct: 136 IFAKGTFTEMAILNKMTGFGS 156


>gi|262301069|gb|ACY43127.1| arg methyltransferase [Libinia emarginata]
          Length = 244

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV+++G G G L+      GA +VI IE         K I  ++     +EII 
Sbjct: 19  HLFKGKTVLDVGCGTGILSMFAAKAGAARVIGIEM-SNIVEHAKKIITANNLDKVVEIIH 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|227356263|ref|ZP_03840652.1| methyltransferase [Proteus mirabilis ATCC 29906]
 gi|227163727|gb|EEI48643.1| methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 252

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDIS--SQHPNRLE 98
           +      TV++IG G G +  ML     +  ++  IE D+      ++ +  SQ  + + 
Sbjct: 43  APITKAKTVLDIGTGSGLIALMLAQRAPQVERIDGIELDEDAALQARENAQQSQWSSLIH 102

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           I   D  +   +     +    I++N PY
Sbjct: 103 IYHHDIYQYAQQA---PTRYDLIVSNPPY 128


>gi|259907667|ref|YP_002648023.1| Putative enzyme [Erwinia pyrifoliae Ep1/96]
 gi|224963289|emb|CAX54774.1| Putative enzyme [Erwinia pyrifoliae Ep1/96]
          Length = 256

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKD--ISSQHPNRLE 98
           +   +    ++IG+G G +  ML    A +V    +E D+      ++   +S  P+++ 
Sbjct: 51  APVANVQRALDIGSGSGLIALMLAQRTADRVHIDAVELDEAAALQAQENVAASPWPDKVR 110

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + Q D ++              I++N PY
Sbjct: 111 VQQADIVEWTQRC---EHRYSLIVSNPPY 136


>gi|212224534|ref|YP_002307770.1| Adenine-specific DNA methylase [Thermococcus onnurineus NA1]
 gi|212009491|gb|ACJ16873.1| Adenine-specific DNA methylase [Thermococcus onnurineus NA1]
          Length = 499

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 57  GPGNLTQMLLTL----GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           G G   + L           +I  E D+     ++D+ SQ    ++I + D L  D+E+ 
Sbjct: 22  GLGVFFRALAKNNKIPKDTVLIGYEIDRNILERVRDLFSQLNISVDIRESDFLVSDWEEQ 81

Query: 113 FNISSPIRIIANLPY 127
           +N      II N PY
Sbjct: 82  YN-----AIICNPPY 91


>gi|192361804|ref|YP_001983201.1| ribosomal protein L11 methyltransferase [Cellvibrio japonicus
           Ueda107]
 gi|226710062|sp|B3PBH5|PRMA_CELJU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|190687969|gb|ACE85647.1| ribosomal protein L11 methyltransferase [Cellvibrio japonicus
           Ueda107]
          Length = 294

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 50/148 (33%), Gaps = 31/148 (20%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
            + VI+ G G G L    L LGARKV+ ++ D Q   +L    +   N+L     DA+ V
Sbjct: 158 DLEVIDYGCGSGILGIAALLLGARKVVGVDIDPQ--ALLATTENAKRNQL---PADAMPV 212

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
               +     P   +  +  NI    L          P   ++T             +  
Sbjct: 213 ----YLPPHCPATQVDVMLANILAGPLAEL------APTLSNMT-------------KPG 249

Query: 168 SPHY--GRLSVLTGWRTKAT-MMFDISP 192
                 G LSV       A    FD  P
Sbjct: 250 GKLCLSGILSVQAQSVMDAYAPWFDFDP 277


>gi|77457554|ref|YP_347059.1| trans-aconitate methyltransferase, putative [Pseudomonas
           fluorescens Pf0-1]
 gi|77381557|gb|ABA73070.1| trans-aconitate 2-methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 256

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 32  DLNI--LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKD 88
           D      + +  +  + +  +V++IG GPGN T++L+      KV  ++         + 
Sbjct: 13  DERTRPARDLLAAIPTREARSVVDIGCGPGNSTELLVERFPGAKVQGLDSSPDMIDAARK 72

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
              Q    L+    D  K      F++     ++  +P +  
Sbjct: 73  RLPQ----LQFAVADIDKWADAGPFDVIFANAVLQWVPDHAT 110


>gi|82753529|ref|XP_727714.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483693|gb|EAA19279.1| similar to CG14544 gene product, putative [Plasmodium yoelii
           yoelii]
          Length = 318

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHP-- 94
           I     +L    +IE G G G LT  L    L    +   E +++ +  +K         
Sbjct: 88  ICLLCNALPNKKIIEAGTGTGCLTYALANCVLPNGIIHTFEYNEERYREVKKEFEDFEDV 147

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            N ++    D +  +FE F N       +    
Sbjct: 148 INNIKFYHKDIINYNFEDFKNNEIDAIFLDMPN 180


>gi|332798340|ref|YP_004459839.1| type 11 methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332696075|gb|AEE90532.1| Methyltransferase type 11 [Tepidanaerobacter sp. Re1]
          Length = 195

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD 88
            +   L+ I + +G  +G  ++++G G G +   +  +     ++I I+  ++   + + 
Sbjct: 20  HNEAKLRYITKMAGISNGDCILDVGTGTGVMIPYIYEMIGDEGEIIAIDLAEKMLEVARQ 79

Query: 89  ISSQHPNRLEIIQDDA 104
                 N +  +  D 
Sbjct: 80  KYPF--NNVRFVLGDI 93


>gi|319441483|ref|ZP_07990639.1| tRNA (guanine-N(7)-)-methyltransferase [Corynebacterium variabile
           DSM 44702]
          Length = 272

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDI 89
           D  ++  + +  G     T++EIG+G G  T  +  L      V V         +L  +
Sbjct: 76  DDQVID-LDDWFGRTGHDTIVEIGSGTGTSTAAMAPLETDHNIVAVEIYRPGLAKLLGSV 134

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNIS 116
                  + +++ D ++V    F   S
Sbjct: 135 VRGGITNVRMVKGDGVEVLQRMFAPGS 161


>gi|315274536|ref|ZP_07869437.1| dimethyladenosine transferase [Listeria marthii FSL S4-120]
 gi|313615834|gb|EFR89061.1| dimethyladenosine transferase [Listeria marthii FSL S4-120]
          Length = 33

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 251 HQAGIETNLRAENLSIEDFCRITNILTD 278
           +  GI+   R E L I +F +++N L D
Sbjct: 1   NAIGIDLIRRGETLDIPEFAKLSNFLGD 28


>gi|310778033|ref|YP_003966366.1| Methyltransferase type 12 [Ilyobacter polytropus DSM 2926]
 gi|309747356|gb|ADO82018.1| Methyltransferase type 12 [Ilyobacter polytropus DSM 2926]
          Length = 268

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           GS     ++E+G G G  +Q +L      K+ +++         K+     PN L  I +
Sbjct: 40  GSKKQYNILEVGCGTGIFSQKILKRFPNSKIDLLDISPAMVETAKEKLGDSPN-LNFIVE 98

Query: 103 DALKVDFEKFFNI 115
           D    + EK +++
Sbjct: 99  DVENYNPEKKYDL 111


>gi|282889892|ref|ZP_06298430.1| hypothetical protein pah_c005o026 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500215|gb|EFB42496.1| hypothetical protein pah_c005o026 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 218

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + +++   +   V+EIG G G     +L    + V  IE+        ++   +
Sbjct: 65  PYIVALMIQAAQVDENSIVLEIGTGSGY-AAAVLGSICQNVYTIERLPHLAQKAQERLQR 123

Query: 93  -HPNRLEIIQDD 103
            H + + +   D
Sbjct: 124 LHYSNVHVEIGD 135


>gi|256810827|ref|YP_003128196.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus fervens AG86]
 gi|256794027|gb|ACV24696.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus fervens AG86]
          Length = 180

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LE 98
                      V++IG G G +T  +     + V  I+ +++   + K   ++   +  +
Sbjct: 25  IGKLNLNKDDVVVDIGCGSGGMTVEIARRC-KFVYAIDYEEEAINLTKQNLAKFNIKNCQ 83

Query: 99  IIQD---DAL 105
           +I     D L
Sbjct: 84  VIMGRAEDIL 93


>gi|269926088|ref|YP_003322711.1| ribosomal protein L11 methyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789748|gb|ACZ41889.1| ribosomal protein L11 methyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 315

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
           +    +++G G G L   +  LGA++V+ ++ D       K    ++   +++++++ 
Sbjct: 177 EESVCLDLGTGSGILAAAMAKLGAKQVLAVDIDPVAVSAAKSTVERNGISDKVQVLEG 234


>gi|237654726|ref|YP_002891040.1| sun protein [Thauera sp. MZ1T]
 gi|237625973|gb|ACR02663.1| sun protein [Thauera sp. MZ1T]
          Length = 435

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 7/142 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A+      G  V++  A PG  T  +L      ++ +E D      +     +   R E+
Sbjct: 248 AQLLDVRAGERVLDACAAPGGKTAHILERADADLLALELDPLRAGRVARNLDRLGLRAEL 307

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLFQ 155
              D  ++    +++     RI+A++P +    +       W+  D+    + +      
Sbjct: 308 KVADCRRL--AAWWDGRPFDRILADVPCSASGVVRRHPDIKWLRRDSDIANFAAQQAEI- 364

Query: 156 KEVGERITAQKNSPHYGRLSVL 177
            E   R  A   +  Y   SV 
Sbjct: 365 LEALWRTLAPGGTMLYVTCSVF 386


>gi|224541462|ref|ZP_03682001.1| hypothetical protein CATMIT_00631 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525620|gb|EEF94725.1| hypothetical protein CATMIT_00631 [Catenibacterium mitsuokai DSM
           15897]
          Length = 277

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G+ V +IG G G +   L       +  ++  ++        + +H   +  ++ D 
Sbjct: 104 IKPGMVVADIGTGSGAIAVTLACESKADLYAVDISKEAIDTASKNAKKHEASVTFLEGDL 163

Query: 105 LKVDFEKFFNISSPIRI-IANLPY 127
           L+       + +  + I ++N PY
Sbjct: 164 LQ----PLIDQNIRVDILVSNPPY 183


>gi|152976742|ref|YP_001376259.1| ribosomal protein L11 methyltransferase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189037690|sp|A7GT06|PRMA_BACCN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|152025494|gb|ABS23264.1| ribosomal protein L11 methyltransferase [Bacillus cytotoxicus NVH
           391-98]
          Length = 312

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G TVI++G G G L+     LGA  V   + D     
Sbjct: 173 VKPGDTVIDVGTGSGVLSIAAAKLGAASVQAYDLDPVAVE 212


>gi|119488445|ref|ZP_01621618.1| hypothetical protein L8106_23745 [Lyngbya sp. PCC 8106]
 gi|119455256|gb|EAW36396.1| hypothetical protein L8106_23745 [Lyngbya sp. PCC 8106]
          Length = 356

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           IA    +     ++++GAG G  T  L   G   V  +E   +F  I+ +        + 
Sbjct: 143 IASQLRNAATTPILDVGAGVGRNTVPLAQRG-HPVDAVELTPEFAQIIANTVKAENLPVR 201

Query: 99  IIQDDAL 105
           ++Q + L
Sbjct: 202 VVQSNIL 208


>gi|88601558|ref|YP_501736.1| ribosomal RNA adenine dimethylase [Methanospirillum hungatei JF-1]
 gi|88187020|gb|ABD40017.1| ribosomal RNA adenine dimethylase [Methanospirillum hungatei JF-1]
          Length = 278

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           ++++           +++IGAGPG L        A  V  IE       ++KD  ++   
Sbjct: 48  IEQVLSRLPITHESRILDIGAGPGTLAFPFAERAAH-VTAIEPSPGMIEVMKDQIAELQV 106

Query: 95  NRLEII 100
           + L I+
Sbjct: 107 HNLTIV 112


>gi|16127725|ref|NP_422289.1| UbiE/COQ5 family methlytransferase [Caulobacter crescentus CB15]
 gi|13425221|gb|AAK25457.1| methlytransferase, UbiE/COQ5 family [Caulobacter crescentus CB15]
          Length = 276

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQ 92
           I + + + +    G  V+++G G G  T         +   +  D       + +  + +
Sbjct: 33  IAQAVVDRADLRAGEAVLDVGCGSGATTFEAAWRVGPQGRAVGADISGALLELARRRAGE 92

Query: 93  HP-NRLEIIQDDALKVDFEKFFN 114
                ++ +Q DA   DF   F+
Sbjct: 93  QGLEGVDFVQADAQTHDFGAGFD 115


>gi|332024024|gb|EGI64242.1| Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial
           [Acromyrmex echinatior]
          Length = 154

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            +   L+G+ + ++G G G LT+ L  +GA ++  I+       + K+ +   PN LE +
Sbjct: 53  NAVLPLEGVKIADVGCGGGILTERLARIGA-QITGIDASADLINVAKEHAKLDPNILERV 111

Query: 101 Q 101
            
Sbjct: 112 N 112


>gi|328954551|ref|YP_004371885.1| Protein-L-isoaspartate O-methyltransferase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454875|gb|AEB10704.1| Protein-L-isoaspartate O-methyltransferase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 259

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + +++    G  V+E+G G G    +L TL   +V  IE   +      D   +
Sbjct: 111 PYIVALMTQAAAVQSGQRVLEVGTGSGYQAAVLATL-TDQVYTIEISPELARSAADRLQK 169

Query: 93  H-PNRLEIIQDDALKVDFEK 111
              +++++   D  +   E 
Sbjct: 170 LGYHQVQVKCGDGYQGWPEA 189


>gi|326800442|ref|YP_004318261.1| ribosomal protein L11 methyltransferase [Sphingobacterium sp. 21]
 gi|326551206|gb|ADZ79591.1| Ribosomal protein L11 methyltransferase [Sphingobacterium sp. 21]
          Length = 292

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G  V+++G G G L  +   +GA +V+ I+ D   +  +K+        +E+ Q  A+K
Sbjct: 151 AGKRVLDMGCGTGILAILAAKIGAEEVVAIDYDPVCYESVKE-------NIELNQVPAIK 203

Query: 107 VDF--EKFFNISSPIRIIANLPYNI 129
           +    ++         I+AN+  NI
Sbjct: 204 IYCGSKEVIPQEPYDLILANINRNI 228


>gi|309365350|emb|CAP23315.2| hypothetical protein CBG_02258 [Caenorhabditis briggsae AF16]
          Length = 476

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 30/177 (16%)

Query: 12  TILSHYKIIPKKYMGQNFLLDLNILKKI--AESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
            +L   KI  KK   Q+  +D  I++ I   +   +    ++I+IGAG G+L++M+    
Sbjct: 129 RLLRK-KIKAKK---QH-EID-RIIELISQVQLFANGIVDSLIDIGAGVGHLSRMVSIHN 182

Query: 70  ARKVIVIE-----------KDQQFFPI-----LKDISSQHPNRLE--IIQDDALKVDFEK 111
              V+ +E            D++               + P R    + ++ ALKVD   
Sbjct: 183 KLAVMAVEGNHQFTISANDLDEKLAKASAVSQTALSFHERPIRYTDFVTEEMALKVDD-- 240

Query: 112 FFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
            F  +S I +  +   +  + +L  ++ +     F   L   + KE       +   
Sbjct: 241 -FTSNSAILVGLHCCGDFSSTVLKVFLDSQKAR-FLVLLGCCYHKEFQCFNFCKPGD 295


>gi|239637579|ref|ZP_04678551.1| O-methyltransferase family protein [Staphylococcus warneri L37603]
 gi|239596797|gb|EEQ79322.1| O-methyltransferase family protein [Staphylococcus warneri L37603]
          Length = 211

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPI 85
           Q  ++D N L+ I +         ++EIG   G       ++     V  IE++ +    
Sbjct: 30  QVPIVDRNTLEMIKQIIRINHTTRILEIGTAIGYSAMQFASVSDDIHVTTIERNSEMISQ 89

Query: 86  LKDISSQ--HPNRLEIIQDDALK 106
            K   S   +  ++ +++ DAL+
Sbjct: 90  AKANISDNHYSAQIRLLEGDALE 112


>gi|224092592|ref|XP_002309675.1| predicted protein [Populus trichocarpa]
 gi|222855651|gb|EEE93198.1| predicted protein [Populus trichocarpa]
          Length = 101

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE 247
           V S+V+   P        L+   + T+  F K+  TL  + K+   E
Sbjct: 37  VDSSVVIIQPKDQIPGVNLDEWCEFTKTCFEKKNTTLGVAFKQKVIE 83


>gi|206900320|ref|YP_002251109.1| spermidine synthase 1 [Dictyoglomus thermophilum H-6-12]
 gi|206739423|gb|ACI18481.1| spermidine synthase 1 [Dictyoglomus thermophilum H-6-12]
          Length = 285

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 19/127 (14%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS------SQHPNRLEIIQDD 103
            V+ IGAG G   + LL      ++ +E D       +         +   +R+ ++ +D
Sbjct: 80  NVLVIGAGEGATLRELLKYENLSIVAVEIDPNVVDFAEKYLWEWHQGAFRSDRVRLVFED 139

Query: 104 ---ALKVDFEKF----FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
               ++   E+F     ++  P        Y + T   +  +     P       ++ Q 
Sbjct: 140 GWNFVRDTNERFDVVVLDLPEPYP--DTPAYRLYTEDFYKMVYNILNPSGI----VVTQA 193

Query: 157 EVGERIT 163
           E  +   
Sbjct: 194 ETVQLGQ 200


>gi|189184784|ref|YP_001938569.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Ikeda]
 gi|262824728|sp|B3CVD8|RSMH_ORITI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189181555|dbj|BAG41335.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Ikeda]
          Length = 312

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 30/66 (45%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
              +D  T ++   G G  ++++L+    KVI  ++D     I      Q+PNR     +
Sbjct: 17  LAPVDNETYLDCTFGAGGYSKLILSNCNCKVIAFDRDPAVISIASQFYQQYPNRFTFFNE 76

Query: 103 DALKVD 108
           + ++ +
Sbjct: 77  NFVEAN 82


>gi|168231001|ref|ZP_02656059.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470540|ref|ZP_03076524.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194456904|gb|EDX45743.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205334598|gb|EDZ21362.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPKIPTALMAQL 162


>gi|218902479|ref|YP_002450313.1| hypothetical protein BCAH820_1362 [Bacillus cereus AH820]
 gi|228926405|ref|ZP_04089477.1| Methyltransferase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|218537612|gb|ACK90010.1| conserved hypothetical protein [Bacillus cereus AH820]
 gi|228833229|gb|EEM78794.1| Methyltransferase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 251

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 14/133 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  +  ++   +   V +IG+G G  ++ LL  G   VI +E +     + +    ++P 
Sbjct: 26  IDYLLSANELNENQIVADIGSGTGIFSRQLLESG-LHVIGVEPNDDMRKMAEQSLKRYP- 83

Query: 96  RLEIIQDDA----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--------WISADTW 143
           R + I+  A    LK +      ++          + I  + +          W S D  
Sbjct: 84  RFQSIKATAENTTLKENSVDLVTVAQAFHWFDKEAFKIECQRILKQKANVALVWNSRDVT 143

Query: 144 PPFWESLTLLFQK 156
            P  +    + QK
Sbjct: 144 SPLIKENAEICQK 156


>gi|217960982|ref|YP_002339550.1| hypothetical protein BCAH187_A3607 [Bacillus cereus AH187]
 gi|229140195|ref|ZP_04268753.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST26]
 gi|217063762|gb|ACJ78012.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|228643281|gb|EEK99554.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST26]
          Length = 239

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     +      KV  +EK++      KD  S   
Sbjct: 25  LTKQLLAQLPLRQGANVLEIGCGTGKTAAYMAKNFGYKVTAVEKNEIMIQKAKDRWSFEG 84

Query: 95  NRLEIIQDDA 104
             +++I+++ 
Sbjct: 85  LDIQLIEENV 94


>gi|161615848|ref|YP_001589813.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365212|gb|ABX68980.1| hypothetical protein SPAB_03640 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 196

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 49  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 103

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T L+   
Sbjct: 104 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQL 150


>gi|163787699|ref|ZP_02182146.1| ribosomal protein L11 methyltransferase [Flavobacteriales bacterium
           ALC-1]
 gi|159877587|gb|EDP71644.1| ribosomal protein L11 methyltransferase [Flavobacteriales bacterium
           ALC-1]
          Length = 279

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ-QFFPILKDISSQHPNRLEIIQD 102
                 +V+++G G G L  +   +GA K+  I+ D   +   L+++   + + + + Q 
Sbjct: 140 NDFKNKSVLDMGCGTGVLAILAEKVGATKIDAIDIDNWCYLNSLENVERNNCDNISVFQG 199

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNI 129
           D          N      IIAN+  NI
Sbjct: 200 D------SSLLNDQKYDVIIANINRNI 220


>gi|222478779|ref|YP_002565016.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222451681|gb|ACM55946.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 265

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISS 91
           ++  +  +  G  V+ +GAG G    +L    GAR +  I+ D++   I +   S
Sbjct: 71  RLISALDADAGDEVLVVGAGVGYSVALLAEIAGARHIHAIDIDREAVAIARSNLS 125


>gi|167033102|ref|YP_001668333.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas putida
           GB-1]
 gi|166859590|gb|ABY97997.1| Cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas putida
           GB-1]
          Length = 420

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISS-QH 93
           L++I +         ++EIG+G G+L     L  G R         Q+   L+ + +   
Sbjct: 181 LRRICQKLELKPDDHLLEIGSGWGSLAIHAALQHGCRVTTATLSAAQYAHTLQRVKALGL 240

Query: 94  PNRLEIIQDD 103
             R+ ++ +D
Sbjct: 241 EQRITVLLED 250


>gi|124262762|ref|YP_001023232.1| hypothetical protein Mpe_B0222 [Methylibium petroleiphilum PM1]
 gi|124262008|gb|ABM96997.1| hypothetical protein Mpe_B0222 [Methylibium petroleiphilum PM1]
          Length = 451

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 15/128 (11%)

Query: 12  TILSHYK----IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            +L   K    + P+K   Q F     +   +  ++G L G  V+E  AG G L  +   
Sbjct: 225 EVLEQLKGGKVVNPRKDQ-QFFATPPELALSVIAAAGPLAGKRVLEPSAGDGALADLARA 283

Query: 68  LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            GA  V++         +LK  +  +    E++  D L V  ++         ++AN P+
Sbjct: 284 AGAEVVVIENW---TVNVLKLEAKGY----EVMDRDFLTVTPQEIGLFD---AVVANPPF 333

Query: 128 NIGTRLLF 135
             G  +  
Sbjct: 334 TRGLDMTH 341


>gi|124006447|ref|ZP_01691280.1| modification methylase HincII [Microscilla marina ATCC 23134]
 gi|123987860|gb|EAY27540.1| modification methylase HincII [Microscilla marina ATCC 23134]
          Length = 522

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
          K   GQ F     ++  +   + +     V+E   G G   + L   G   +   E D  
Sbjct: 7  KNKFGQYF-TPEAVVDFMISLTDAPSDAQVLEPSCGAGIFMERLQKKGFYNLTAYEIDPS 65

Query: 82 FF 83
            
Sbjct: 66 LA 67


>gi|154245796|ref|YP_001416754.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2]
 gi|263504945|sp|A7IGF4|RSMH_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154159881|gb|ABS67097.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2]
          Length = 345

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G  T+ +L     +V+ I++D        D+ ++   RL ++ D   ++D
Sbjct: 45  GAGGYTRGILNAADCRVLAIDRDPTAIAAGADLVAEAAGRLTLVNDRFSRLD 96


>gi|319740479|gb|ADV60533.1| arg methyltransferase [Quentalia chromana]
          Length = 244

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI IE         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAIEC-SNIVDYARKIVEANRLDDVIEIVK 77

Query: 102 DDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLF---NWISADTWPPFWESLTLLF 154
                +++  EK   I S          ++   +LF    W++AD           + 
Sbjct: 78  GKVEEVELPVEKVDIIISEWMGYCLFYESMLDTVLFARDKWLTADGIMFPDRCTLFIC 135


>gi|315645960|ref|ZP_07899081.1| ribosomal protein L11 methyltransferase [Paenibacillus vortex V453]
 gi|315278721|gb|EFU42035.1| ribosomal protein L11 methyltransferase [Paenibacillus vortex V453]
          Length = 325

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G  VI++G G G L+     LGA +++ ++ D       K+    +   + + + + 
Sbjct: 175 IQGGEEVIDVGTGSGILSIGAAHLGASRILALDLDPVAVSSAKENTRLNGLEDVITVKES 234

Query: 103 DALKV 107
           D L V
Sbjct: 235 DLLSV 239


>gi|312876983|ref|ZP_07736957.1| O-methyltransferase-like protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796214|gb|EFR12569.1| O-methyltransferase-like protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 240

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL----TLGARKVIVIEKDQQFF--PILKDISSQHP 94
           +         V+E   G GNL   +L        +K+  +E  ++     IL    +   
Sbjct: 32  DFIQLKKNDIVVEF--GTGNLIIPILLWAKGKKFKKLYALEIQKEVCDLAILNRNINNLQ 89

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +R+E+I  D LK D  K F       +  N PY
Sbjct: 90  DRIEVINAD-LK-DALKIFGSEFANVVFTNPPY 120


>gi|312792411|ref|YP_004025334.1| O-methyltransferase-like protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179551|gb|ADQ39721.1| O-methyltransferase-like protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 240

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL----TLGARKVIVIEKDQQFF--PILKDISSQHP 94
           +         V+E   G GNL   +L        +K+  +E  ++     IL    +   
Sbjct: 32  DFIQLKKNDIVVEF--GTGNLIIPILLWAKGKKFKKLYALEIQKEVCDLAILNRNINNLQ 89

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +R+E+I  D LK D  K F       +  N PY
Sbjct: 90  DRIEVINAD-LK-DALKIFGSEFANVVFTNPPY 120


>gi|312864016|ref|ZP_07724252.1| ribosomal protein L11 methyltransferase [Streptococcus vestibularis
           F0396]
 gi|322517606|ref|ZP_08070474.1| ribosomal protein L11 methyltransferase [Streptococcus vestibularis
           ATCC 49124]
 gi|311100429|gb|EFQ58636.1| ribosomal protein L11 methyltransferase [Streptococcus vestibularis
           F0396]
 gi|322123771|gb|EFX95349.1| ribosomal protein L11 methyltransferase [Streptococcus vestibularis
           ATCC 49124]
          Length = 317

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TVI++G G G L+     LGA+++   + D     + ++    +P+   + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDDVAVRVAQENIDMNPSMENIHVATG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|285017549|ref|YP_003375260.1| methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283472767|emb|CBA15272.1| putative methyltransferase protein [Xanthomonas albilineans]
          Length = 260

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
          +      G  ++++G G G LT  L   GA  V+ ++   +     +  
Sbjct: 34 DLLAPQPGERILDLGCGDGVLTAKLAASGAD-VLGVDVSPELIAAARTR 81


>gi|121533820|ref|ZP_01665647.1| putative methyltransferase [Thermosinus carboxydivorans Nor1]
 gi|121307811|gb|EAX48726.1| putative methyltransferase [Thermosinus carboxydivorans Nor1]
          Length = 163

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDAL 105
              V+++ AG GNL    ++ GA+  I ++       ++K+  I ++  +R  + + DAL
Sbjct: 42  DADVLDLFAGTGNLGLEAVSRGAKSAIFVDNSPASIALIKENIIRTKSADRTHVYKSDAL 101

Query: 106 KVDFEKFFNISSPIRIIANLPYN--IGTRLLFNW 137
           +          +   I  + PYN  + T ++   
Sbjct: 102 RYIDRAAQLGQNFDLIFCDPPYNKGLATAVVEKL 135


>gi|157105369|ref|XP_001648837.1| protein-(glutamine-N5) methyl transferase, putative [Aedes aegypti]
 gi|108880106|gb|EAT44331.1| protein-(glutamine-N5) methyl transferase, putative [Aedes aegypti]
          Length = 328

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 30/195 (15%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISS 91
             +++ I +   +   +  +EIG G G ++  +L   A +   +  DQ      L   ++
Sbjct: 137 EELIELILQQIDAQKEMKFLEIGCGTGAISLSILKH-APQASAVALDQSTLACELTMENA 195

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
           ++   +     D L++            +++  LP  + +      +S   + P  + L 
Sbjct: 196 KNHGLV-----DNLRI---------FRHKLVDKLPTELESHKFDMIVSNPPYVPSRQLLA 241

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L  + +V E + A    P    L+V          + DI+     P     S V+     
Sbjct: 242 LEPEIKVYEDLRALDGGPD--GLTV-------VKAILDIAGKHLEP-----SGVLWLEVD 287

Query: 212 LNPIPCCLESLKKIT 226
            +  P   + L++  
Sbjct: 288 SSHPPLIEKYLEEAV 302


>gi|6706993|gb|AAF25534.1|AF104994_4 methyltransferase [Streptomyces coelicolor A3(2)]
          Length = 268

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNR 96
            + E+        V+++  G G +T  LL          ++ D     I +   +   +R
Sbjct: 53  DMVEAL-VGPAPRVLDLACGTGTITARLLDRFPDATSTGVDLDPALLAIAEGTFAG-DDR 110

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           +  +  D          +   P ++  +    + T    +W  A+     +  +  L 
Sbjct: 111 VSFVAAD--------LKDPDWPAKLPYDAYDAVLTATALHWFHAEPLADLYGRVAELV 160


>gi|71905771|ref|YP_283358.1| methionine biosynthesis MetW [Dechloromonas aromatica RCB]
 gi|71845392|gb|AAZ44888.1| Methionine biosynthesis MetW [Dechloromonas aromatica RCB]
          Length = 203

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  V+++G G G L + L+       + +E D        +I +   N + IIQ + 
Sbjct: 17  VEPGHRVLDLGCGDGTLLKHLIETRGVHGVGVEIDD------ANILAAIKNGINIIQGN- 69

Query: 105 LKVDFEKFFNISSPIRIIANLPYNI--GTRLLFNWISADT 142
           L+   ++F + +    +++     +     +L   +    
Sbjct: 70  LERGLDEFADQAFDHVVLSRTLQTVRHTEGILREMLRVGR 109


>gi|330873300|gb|EGH07449.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 422

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 29  FLLDLNILK--------KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           FL D + L+        +I +         ++EIG G G++          +V      +
Sbjct: 166 FLSDDDTLEQAQLNKLERICQKLALKPTDHLLEIGTGWGSMAIYAAQQYGCRVTTTTLSR 225

Query: 81  QFFPILKDISSQ--HPNRLEIIQDD 103
           + F   +    +    +R+ ++  D
Sbjct: 226 EQFAYTEQRLIKLGLQDRVTLLLTD 250


>gi|325108587|ref|YP_004269655.1| cyclopropane-fatty-acyl-phospholipid synthase [Planctomyces
           brasiliensis DSM 5305]
 gi|324968855|gb|ADY59633.1| cyclopropane-fatty-acyl-phospholipid synthase [Planctomyces
           brasiliensis DSM 5305]
          Length = 419

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-- 93
           L  I    G   G+ V+EIG G G   +  +T     V       +     ++   +   
Sbjct: 189 LDLICRKLGLSPGMRVVEIGTGWGGFAEHAVTKYGCHVTTTTISSEQHAHARERFERAGI 248

Query: 94  PNRLEIIQDD 103
            N++E+++ D
Sbjct: 249 ANQVELLKSD 258


>gi|268324959|emb|CBH38547.1| hypothetical protein, SAM dependent methyltransferases family
          [uncultured archaeon]
          Length = 305

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 29 FLL----DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
          FL        I+  I       +   ++EIG G G+LT  L    A  V   + 
Sbjct: 44 FLRYETCSQYIVPWIERYIDL-ENANIVEIGCGTGSLTVALAQS-AHHVYAYDI 95


>gi|134094006|ref|YP_001099081.1| putative spermidine synthase [Herminiimonas arsenicoxydans]
 gi|133737909|emb|CAL60954.1| Conserved hypothetical protein, putative spermidine synthase
           [Herminiimonas arsenicoxydans]
          Length = 276

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 11/149 (7%)

Query: 47  DGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDD 103
               ++++G G G LT+         +V  ++ +     I + +    PN  RL +I+ D
Sbjct: 86  KPQHIVQLGLGTGALTKFSYKWFREAQVTAVDLNPSVITICETMFKLPPNDERLNVIEMD 145

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           AL+   +           +          +L         P F++S       +    + 
Sbjct: 146 ALEYVNDPANLGRIDALQVDVYDATARGPVL-------DTPEFYQSCAACLTPDGIMTVN 198

Query: 164 AQKNSPHYGR-LSVLTGWRTKATMMFDIS 191
              + P Y R LS +         + ++ 
Sbjct: 199 LFGDHPSYARNLSAMHFAFDTVISLPEVH 227


>gi|34540018|ref|NP_904497.1| HemK family modification methylase [Porphyromonas gingivalis W83]
 gi|34396329|gb|AAQ65396.1| modification methylase, HemK family [Porphyromonas gingivalis W83]
          Length = 293

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           IL+K   ++ SL    ++++G G G L   L      KV  ++         +    +  
Sbjct: 107 ILRKERPAAASL---CLLDVGTGSGCLAITLARELRAKVWAMDISPDALATARTNVGE-D 162

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI---GTRLLFNWISADTWPPFW 147
           +R+   + D L  D      +     I++N PY +      + ++ +  +     +
Sbjct: 163 DRIFFFEGDILSPDNRWDV-LPPVDIIVSNPPYIMPAESADMAYHVLGHEPALALF 217


>gi|21283293|ref|NP_646381.1| hypothetical protein MW1564 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486447|ref|YP_043668.1| putative O-methyltransferase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650496|ref|YP_186509.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161205|ref|YP_494266.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195423|ref|YP_500227.1| hypothetical protein SAOUHSC_01718 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221727|ref|YP_001332549.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509841|ref|YP_001575500.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141116|ref|ZP_03565609.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253732269|ref|ZP_04866434.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733135|ref|ZP_04867300.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258424040|ref|ZP_05686922.1| O-methyltransferase [Staphylococcus aureus A9635]
 gi|258450559|ref|ZP_05698621.1| O-methyltransferase [Staphylococcus aureus A5948]
 gi|262048609|ref|ZP_06021492.1| hypothetical protein SAD30_1005 [Staphylococcus aureus D30]
 gi|262051269|ref|ZP_06023493.1| hypothetical protein SA930_1700 [Staphylococcus aureus 930918-3]
 gi|282920161|ref|ZP_06327886.1| O-methyltransferase [Staphylococcus aureus A9765]
 gi|284024671|ref|ZP_06379069.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848643|ref|ZP_06789389.1| O-methyltransferase [Staphylococcus aureus A9754]
 gi|297207666|ref|ZP_06924101.1| O-methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300911748|ref|ZP_07129191.1| O-methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380789|ref|ZP_07363456.1| O-methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|21204733|dbj|BAB95429.1| MW1564 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244890|emb|CAG43351.1| putative O-methyltransferase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284682|gb|AAW36776.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127179|gb|ABD21693.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202981|gb|ABD30791.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374527|dbj|BAF67787.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368650|gb|ABX29621.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724058|gb|EES92787.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728891|gb|EES97620.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257845661|gb|EEV69693.1| O-methyltransferase [Staphylococcus aureus A9635]
 gi|257861717|gb|EEV84516.1| O-methyltransferase [Staphylococcus aureus A5948]
 gi|259160906|gb|EEW45926.1| hypothetical protein SA930_1700 [Staphylococcus aureus 930918-3]
 gi|259163256|gb|EEW47815.1| hypothetical protein SAD30_1005 [Staphylococcus aureus D30]
 gi|269941100|emb|CBI49486.1| putative O-methyltransferase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594509|gb|EFB99494.1| O-methyltransferase [Staphylococcus aureus A9765]
 gi|283470891|emb|CAQ50102.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus ST398]
 gi|294824669|gb|EFG41092.1| O-methyltransferase [Staphylococcus aureus A9754]
 gi|296887683|gb|EFH26581.1| O-methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|298694894|gb|ADI98116.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300885994|gb|EFK81196.1| O-methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751443|gb|ADL65620.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340665|gb|EFM06598.1| O-methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198689|gb|EFU29017.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140499|gb|EFW32353.1| O-methyltransferase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144038|gb|EFW35807.1| O-methyltransferase [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314289|gb|AEB88702.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728322|gb|EGG64759.1| O-methyltransferase [Staphylococcus aureus subsp. aureus 21189]
 gi|329733200|gb|EGG69537.1| O-methyltransferase [Staphylococcus aureus subsp. aureus 21193]
          Length = 212

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           ++D   L  I +     +   ++EIG   G  +    ++     V  IE+++      K 
Sbjct: 34  IVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQ 93

Query: 89  ISS--QHPNRLEIIQDDALK 106
             +     N++ II+ +AL+
Sbjct: 94  NLATYHFENQVRIIEGNALE 113


>gi|117926560|ref|YP_867177.1| O-methyltransferase-like protein [Magnetococcus sp. MC-1]
 gi|117610316|gb|ABK45771.1| O-methyltransferase-like protein [Magnetococcus sp. MC-1]
          Length = 213

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHPNRLE 98
           A     L G   +E+GAG G  +  L  L    VI  +E+        + + +++   + 
Sbjct: 21  ARVVAGLPGRRFLELGAGCGQASVRLAGLREGCVIDALERQLVLVEEARLLVARYGVAVR 80

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +I  D L+ D+           +  N PY
Sbjct: 81  VIAGD-LR-DWRGLLGGGCYDGVFFNPPY 107


>gi|83282701|ref|XP_729885.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488972|gb|EAA21450.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 362

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQHPN 95
             I ++   +    V+++G G G L+      GA+ V  IEK    +  L    ++   +
Sbjct: 100 DAIRKNEHLIKDKIVLDVGCGTGILSFFAAKHGAKHVYSIEKSNIIYTALNIRDANNLTD 159

Query: 96  RLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLF---NWISADTWPPFWESL 150
           ++  I+  A  + +  EK   I S       L  N+   +LF    W+       F +  
Sbjct: 160 KITFIKGLAENITLPVEKVDIIISEWMGYCLLYENMLDTVLFCRDKWLKPGGII-FPDKA 218

Query: 151 TLLFQKEVGERITAQ 165
            +   +EV      +
Sbjct: 219 YMYIAEEVVIDYVDK 233


>gi|323310206|gb|EGA63398.1| Hmt1p [Saccharomyces cerevisiae FostersO]
          Length = 371

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHP 94
             I ++        V+++G G G L+      GA+ VI ++       + K++       
Sbjct: 48  NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM-SSIIEMAKELVELNGFS 106

Query: 95  NRLEIIQD 102
           +++ +++ 
Sbjct: 107 DKITLLRG 114


>gi|312144056|ref|YP_003995502.1| protein-L-isoaspartate O-methyltransferase [Halanaerobium sp.
           'sapolanicus']
 gi|311904707|gb|ADQ15148.1| protein-L-isoaspartate O-methyltransferase [Halanaerobium sp.
           'sapolanicus']
          Length = 216

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E     +   V+EIG G G     +L     +V  IE+    F IL + +SQ
Sbjct: 65  PYIVAYMIEKLNLSEEDKVLEIGTGSGY-AAAILAQIVEEVYTIER----FEILAEKASQ 119

Query: 93  HPNRL 97
              +L
Sbjct: 120 RFKKL 124


>gi|300710969|ref|YP_003736783.1| protein-L-isoaspartate O-methyltransferase [Halalkalicoccus
           jeotgali B3]
 gi|299124652|gb|ADJ14991.1| protein-L-isoaspartate O-methyltransferase [Halalkalicoccus
           jeotgali B3]
          Length = 204

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
            E +      TV+++G G G +   L    A +V+  +  +      ++ +++   N +E
Sbjct: 36  IEHADPGPEETVLDLGCGTGAIALALAP-DAGRVVGRDISEGMMERAREKAAERGLNNVE 94

Query: 99  IIQD 102
             + 
Sbjct: 95  FGEG 98


>gi|294155359|ref|YP_003559743.1| putative methyltransferase [Mycoplasma crocodyli MP145]
 gi|291600525|gb|ADE20021.1| putative methyltransferase [Mycoplasma crocodyli MP145]
          Length = 182

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 35  ILKKIAESSG-----SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
              KI ES        L    V+++ AG G  +   L+  A K + +EKD++ + I+K  
Sbjct: 25  TTDKIRESVFSSIQFDLKDKIVLDLFAGSGAWSIEALSRYAMKAVAVEKDKKAYEIIKKN 84

Query: 90  SSQHP-NRLEIIQDDALKV 107
                 N LE+   D +  
Sbjct: 85  IKNLDINNLEVWNSDVIYF 103


>gi|269791949|ref|YP_003316853.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099584|gb|ACZ18571.1| Protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 223

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           ++ E       + V+E+G+G G    +L  +G   V+ +E+ +      +++       +
Sbjct: 78  RMTELLSPEPPVRVLEVGSGCGYQCAVLARMGC-SVVGVERIRDLADWSREVLGGLGMEV 136

Query: 98  EIIQDD 103
            II  D
Sbjct: 137 SIIHGD 142


>gi|322421516|ref|YP_004200739.1| polysaccharide deacetylase [Geobacter sp. M18]
 gi|320127903|gb|ADW15463.1| polysaccharide deacetylase [Geobacter sp. M18]
          Length = 496

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 51/141 (36%), Gaps = 7/141 (4%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108
            V+EIGAG G  T  +      +V+ ++       +L+  +     + + I++ +  +++
Sbjct: 315 RVMEIGAGTGIFTLDIA-RNCGEVLAVDISGNMLELLRKKAQSAGIDNIRIVKGNVEEME 373

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168
               F+++      + L Y          +S    P    +L  +  +    R   Q  +
Sbjct: 374 PAGPFSVA---CAFSVLEYLTDLPGFLKRLSDQVEPGG--ALYFITARTSFFRFFTQIGN 428

Query: 169 PHYGRLSVLTGWRTKATMMFD 189
                + + +  R +   M  
Sbjct: 429 AMRQGIWLKSHSRGQIERMLR 449


>gi|254282689|ref|ZP_04957657.1| methyltransferase type 11 [gamma proteobacterium NOR51-B]
 gi|219678892|gb|EED35241.1| methyltransferase type 11 [gamma proteobacterium NOR51-B]
          Length = 326

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           ++    D  +V+EIG G G+L   L       +  ++       I           +  I
Sbjct: 154 DTLALADDASVLEIGPGEGDLLPALAER-VTNLTALDNSPAMLDI-ARTKIDPGLAVTFI 211

Query: 101 QDDA 104
           + D 
Sbjct: 212 EGDI 215


>gi|171909881|ref|ZP_02925351.1| hypothetical protein VspiD_01875 [Verrucomicrobium spinosum DSM
           4136]
          Length = 167

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNR 96
           + E +      +V+E+G G G  T  +  +       + +E +Q F   L+    QHP R
Sbjct: 1   MVECAQVAKARSVLELGPGTGAFTTAIDEVLPEGASYLGLELNQTFVDQLR---QQHP-R 56

Query: 97  LEIIQDDALKVDFE-KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           +        + DF        S   I++ LP+      L   I     P        +
Sbjct: 57  MRFEAAPCQEFDFAGSLGPDCSFDSIVSGLPWTNFPAGLQEAILDHVLPRLRPGGVFV 114


>gi|17568207|ref|NP_509997.1| hypothetical protein F55G7.2 [Caenorhabditis elegans]
 gi|3877615|emb|CAA90610.1| C. elegans protein F55G7.2, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 383

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 17/154 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPI--------- 85
           +  I +          +++G+G G L   +      +K + IE                 
Sbjct: 165 IGSIVDELKLNSSDVFVDLGSGIGQLVCFVAAYSKVKKAVGIELSSVPAEYAVSQGMYFK 224

Query: 86  -LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY--NIGTRLLFNWISADT 142
            L     +    +E+IQ D L   F       + +  I N  +  ++  R++F  +    
Sbjct: 225 NLMTFFDKQHGEIELIQGDFLHPQFHDLICKEATVIFINNYAFEDDLTRRIVFELLQNCA 284

Query: 143 WPPFWESL-TLLFQKEVGERITAQKNSPHYGRLS 175
                 S   L   + V  R  A      +G +S
Sbjct: 285 DGTRIVSAKPLSLPRSVASRRHA---MSDFGSMS 315


>gi|12084699|pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
 gi|12084700|pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
 gi|12084701|pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
 gi|12084702|pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
 gi|12084703|pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
 gi|12084704|pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
          Length = 328

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHP 94
             I ++        V+++G G G L+      GA+ VI ++       + K++       
Sbjct: 28  NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM-SSIIEMAKELVELNGFS 86

Query: 95  NRLEIIQD 102
           +++ +++ 
Sbjct: 87  DKITLLRG 94


>gi|6319508|ref|NP_009590.1| Hmt1p [Saccharomyces cerevisiae S288c]
 gi|585608|sp|P38074|HMT1_YEAST RecName: Full=HNRNP arginine N-methyltransferase; AltName:
           Full=Protein ODP1
 gi|498761|emb|CAA53689.1| YBR0320 [Saccharomyces cerevisiae]
 gi|536250|emb|CAA84976.1| HMT1 [Saccharomyces cerevisiae]
 gi|45269629|gb|AAS56195.1| YBR034C [Saccharomyces cerevisiae]
 gi|151946425|gb|EDN64647.1| arginine methyltransferase [Saccharomyces cerevisiae YJM789]
 gi|190408799|gb|EDV12064.1| arginine methyltransferase [Saccharomyces cerevisiae RM11-1a]
 gi|256269005|gb|EEU04347.1| Hmt1p [Saccharomyces cerevisiae JAY291]
 gi|285810369|tpg|DAA07154.1| TPA: Hmt1p [Saccharomyces cerevisiae S288c]
 gi|290878051|emb|CBK39110.1| Hmt1p [Saccharomyces cerevisiae EC1118]
 gi|323306084|gb|EGA59818.1| Hmt1p [Saccharomyces cerevisiae FostersB]
 gi|323334524|gb|EGA75898.1| Hmt1p [Saccharomyces cerevisiae AWRI796]
 gi|323338840|gb|EGA80055.1| Hmt1p [Saccharomyces cerevisiae Vin13]
 gi|323349675|gb|EGA83890.1| Hmt1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323356303|gb|EGA88107.1| Hmt1p [Saccharomyces cerevisiae VL3]
 gi|1587590|prf||2206497N ORF YBR0320
          Length = 348

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHP 94
             I ++        V+++G G G L+      GA+ VI ++       + K++       
Sbjct: 48  NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM-SSIIEMAKELVELNGFS 106

Query: 95  NRLEIIQD 102
           +++ +++ 
Sbjct: 107 DKITLLRG 114


>gi|314933761|ref|ZP_07841126.1| methyltransferase [Staphylococcus caprae C87]
 gi|313653911|gb|EFS17668.1| methyltransferase [Staphylococcus caprae C87]
          Length = 239

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I ++    +   ++++G G GNLT ML+ LG   VI ++       I    ++Q  N + 
Sbjct: 26  IVQTFSKRESNDILDLGCGTGNLTHMLVPLG--NVIGMDLSVDMLTI----ANQKSNEVR 79

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
            ++ D       + FNI   I I  +    + +           +    +    LF    
Sbjct: 80  WLEGDMTSFKLNQKFNI---ITIFCDSLNYLSSSKEVKETFNKVYQHLTDDGVFLFDVHT 136

Query: 159 GERITAQKNSPHY 171
             ++    N+  Y
Sbjct: 137 VHKMNTLFNNQSY 149


>gi|283786705|ref|YP_003366570.1| Protein-L-isoaspartate O-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282950159|emb|CBG89795.1| Protein-L-isoaspartate O-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 208

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQL 162


>gi|240139856|ref|YP_002964333.1| putative methyltransferase small [Methylobacterium extorquens AM1]
 gi|254562275|ref|YP_003069370.1| methyltransferase small [Methylobacterium extorquens DM4]
 gi|240009830|gb|ACS41056.1| putative methyltransferase small [Methylobacterium extorquens AM1]
 gi|254269553|emb|CAX25519.1| putative methyltransferase small [Methylobacterium extorquens DM4]
          Length = 250

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH--PNR 96
           A       G T+ ++GA  G +   +  L    +V+++E+D     + ++ ++ +    R
Sbjct: 33  ARLLAPAPGATLYDLGAATGAVGLAVARLTEVGRVVLVERDPDLVALARENAAANGLDGR 92

Query: 97  LEIIQDDAL 105
           + +I+ D L
Sbjct: 93  VAVIEADLL 101


>gi|228944973|ref|ZP_04107334.1| Methyltransferase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228814642|gb|EEM60902.1| Methyltransferase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 251

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 14/133 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  +  ++   +   V +IG+G G  ++ LL  G   VI +E +     + +    ++P 
Sbjct: 26  IDYLLSANELNENQIVADIGSGTGIFSRQLLESG-LHVIGVEPNDDMRKMAEQSLKRYP- 83

Query: 96  RLEIIQDDA----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--------WISADTW 143
           R + I+  A    LK +      ++          + I  + +          W S D  
Sbjct: 84  RFQSIKATAENTTLKENSVDLVTVAQAFHWFDKEAFKIECQRILKQKANVALVWNSRDVT 143

Query: 144 PPFWESLTLLFQK 156
            P  +    + QK
Sbjct: 144 SPLIKENAEICQK 156


>gi|261346903|ref|ZP_05974547.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rustigianii DSM 4541]
 gi|282564970|gb|EFB70505.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rustigianii DSM 4541]
          Length = 428

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLE 98
           AE    +DG +++++ A PG  T  +L L  +  V+ ++ D      +K+   +   +  
Sbjct: 239 AELLSPVDGDSILDLCAAPGGKTTHILELAPKAHVLAVDIDDSRLKRVKENLQRLKQQAI 298

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLF 154
           +IQ D  K   E++ +     RI+ + P +    +       W+  D+       L    
Sbjct: 299 VIQGDGTK--PEEWAHGQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELSQLQFQI 356

Query: 155 QKEVGERITAQKNSPHYGRLSVL 177
             E          +  Y   S++
Sbjct: 357 -LEAIWPYLKPGGTLVYATCSII 378


>gi|188583965|ref|YP_001927410.1| protein-L-isoaspartate O-methyltransferase [Methylobacterium populi
           BJ001]
 gi|209573199|sp|B1ZJW1|PIMT_METPB RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|179347463|gb|ACB82875.1| protein-L-isoaspartate O-methyltransferase [Methylobacterium populi
           BJ001]
          Length = 212

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             I+  + E+     G  V+E+GAG G    +L T+GAR +  IE+
Sbjct: 62  PYIVALMIEALALRPGERVLEVGAGCGYAAAVLATMGAR-IFAIER 106


>gi|227827841|ref|YP_002829621.1| ribosomal protein L11 methyltransferase [Sulfolobus islandicus
           M.14.25]
 gi|227830551|ref|YP_002832331.1| ribosomal protein L11 methyltransferase, [Sulfolobus islandicus
           L.S.2.15]
 gi|229579364|ref|YP_002837762.1| ribosomal protein L11 methyltransferase, [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581876|ref|YP_002840275.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           islandicus Y.N.15.51]
 gi|229585111|ref|YP_002843613.1| ribosomal protein L11 methyltransferase [Sulfolobus islandicus
           M.16.27]
 gi|238620014|ref|YP_002914840.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           islandicus M.16.4]
 gi|284998046|ref|YP_003419813.1| Ribosomal protein L11 methyltransferase, putative [Sulfolobus
           islandicus L.D.8.5]
 gi|227456999|gb|ACP35686.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           islandicus L.S.2.15]
 gi|227459637|gb|ACP38323.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           islandicus M.14.25]
 gi|228010078|gb|ACP45840.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           islandicus Y.G.57.14]
 gi|228012592|gb|ACP48353.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           islandicus Y.N.15.51]
 gi|228020161|gb|ACP55568.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           islandicus M.16.27]
 gi|238381084|gb|ACR42172.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           islandicus M.16.4]
 gi|284445941|gb|ADB87443.1| Ribosomal protein L11 methyltransferase, putative [Sulfolobus
           islandicus L.D.8.5]
 gi|323474909|gb|ADX85515.1| methyltransferase, unknown function [Sulfolobus islandicus REY15A]
 gi|323477650|gb|ADX82888.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           islandicus HVE10/4]
          Length = 161

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK-DQQFFPILKDIS 90
             +++++ E +       V ++G G G  +         +K + +E  D++    L +I 
Sbjct: 14  EKVVRRMLEIAKVSQDDIVYDLGCGDGRIIITAAKDFNVKKAVGVEINDERIREALANIE 73

Query: 91  S-QHPNRLEIIQDDALKVDFEK 111
                 R  I++ +  +VD  +
Sbjct: 74  KNGVTGRASIVKGNFFEVDISE 95


>gi|157118336|ref|XP_001653177.1| spermine synthase [Aedes aegypti]
 gi|108883300|gb|EAT47525.1| spermine synthase [Aedes aegypti]
          Length = 372

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 26/134 (19%)

Query: 11  KTILSHYKIIPKKYMGQNFLL-DLNILKKIAES------------SGSLDGITVIEIGAG 57
           ++     +I+  K +G N L+ D   L+ IAE+              +     +  +G G
Sbjct: 147 RSDFQKIQIVHSKSLG-NMLVLDE--LQNIAEADLIYTETLMRRGVENYKDKEICILGGG 203

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKD---------ISSQHPNRLEIIQDDALKVD 108
            G L   LL    + V+++E D                  +  +  +  EI+  D +   
Sbjct: 204 DGALLYELLKEEPKHVVMLEIDDLVMEACNKYMNSICGDVLEKRKSDNYEIVIGDCMMY- 262

Query: 109 FEKFFNISSPIRII 122
             KF         +
Sbjct: 263 LNKFIKEGRKFDYV 276


>gi|16766232|ref|NP_461847.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62181428|ref|YP_217845.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|167550221|ref|ZP_02343978.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993166|ref|ZP_02574261.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168242667|ref|ZP_02667599.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168261944|ref|ZP_02683917.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463932|ref|ZP_02697849.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168820372|ref|ZP_02832372.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194445194|ref|YP_002042167.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194450772|ref|YP_002046884.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197250963|ref|YP_002147823.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262822|ref|ZP_03162896.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|198242854|ref|YP_002216892.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200388613|ref|ZP_03215225.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204928018|ref|ZP_03219218.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205353867|ref|YP_002227668.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858186|ref|YP_002244837.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224584704|ref|YP_002638502.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238909695|ref|ZP_04653532.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|20139014|sp|Q8ZMF9|PIMT_SALTY RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|75481234|sp|Q57KJ8|PIMT_SALCH RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|209573239|sp|A9N1H6|PIMT_SALPB RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|238690040|sp|B5F407|PIMT_SALA4 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|238690374|sp|B5FTS1|PIMT_SALDC RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|238690401|sp|B5QW14|PIMT_SALEP RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|238690515|sp|B5RDP9|PIMT_SALG2 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|238690638|sp|B4TFW3|PIMT_SALHS RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|238693607|sp|B4T453|PIMT_SALNS RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|254782275|sp|C0PXA3|PIMT_SALPC RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|16421475|gb|AAL21806.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|62129061|gb|AAX66764.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194403857|gb|ACF64079.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194409076|gb|ACF69295.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|195633485|gb|EDX51899.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197214666|gb|ACH52063.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197241077|gb|EDY23697.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197937370|gb|ACH74703.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199605711|gb|EDZ04256.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204322340|gb|EDZ07537.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205273648|emb|CAR38637.1| L-isoaspartyl protein carboxyl methyltransferase type II
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205324765|gb|EDZ12604.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328772|gb|EDZ15536.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205338108|gb|EDZ24872.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205342874|gb|EDZ29638.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205349120|gb|EDZ35751.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709989|emb|CAR34344.1| L-isoaspartyl protein carboxyl methyltransferase type II
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224469231|gb|ACN47061.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261248062|emb|CBG25896.1| L-isoaspartyl protein carboxyl methyltransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267995057|gb|ACY89942.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159485|emb|CBW19004.1| Protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312913944|dbj|BAJ37918.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087329|emb|CBY97094.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321225601|gb|EFX50655.1| Protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614253|gb|EFY11184.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621683|gb|EFY18536.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624544|gb|EFY21377.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628876|gb|EFY25659.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633398|gb|EFY30140.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636026|gb|EFY32734.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639619|gb|EFY36305.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646918|gb|EFY43421.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652219|gb|EFY48578.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654702|gb|EFY51021.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658923|gb|EFY55176.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664510|gb|EFY60704.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668241|gb|EFY64398.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673779|gb|EFY69880.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677840|gb|EFY73903.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681330|gb|EFY77362.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322683732|gb|EFY79742.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322715912|gb|EFZ07483.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323131278|gb|ADX18708.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193880|gb|EFZ79083.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200349|gb|EFZ85431.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202371|gb|EFZ87415.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323205605|gb|EFZ90570.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210118|gb|EFZ95021.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216419|gb|EGA01146.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220764|gb|EGA05205.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226392|gb|EGA10600.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230728|gb|EGA14846.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234921|gb|EGA19007.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238960|gb|EGA23010.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241660|gb|EGA25691.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248193|gb|EGA32129.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251223|gb|EGA35096.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257393|gb|EGA41089.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263243|gb|EGA46781.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264255|gb|EGA47761.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271081|gb|EGA54509.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624655|gb|EGE31000.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628977|gb|EGE35320.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989797|gb|AEF08780.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 208

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQL 162


>gi|300864969|ref|ZP_07109801.1| precorrin-6B methylase [Oscillatoria sp. PCC 6506]
 gi|300337025|emb|CBN54951.1| precorrin-6B methylase [Oscillatoria sp. PCC 6506]
          Length = 197

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNL---TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-N 95
                      V +IGAG G +   T +L   G  ++I IE+D++   +++    +    
Sbjct: 33  ISHLRLQADSVVWDIGAGTGTIAVETGLLCPKG--QIIAIERDEEVASLIRRNCDRFELK 90

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIA 123
            +E+I+  A     E   ++ S    + 
Sbjct: 91  NVEVIEGSA----PECLKDLPSRPHRVC 114


>gi|262273082|ref|ZP_06050899.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
           CIP 101886]
 gi|262222838|gb|EEY74146.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
           CIP 101886]
          Length = 426

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 14/148 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLE 98
            +      G  +++  A PG  T  +L       V+ ++ D      ++D   +   +  
Sbjct: 236 VDYLKPQAGELILDCCAAPGGKTCHILEHEPSANVVAMDVDAARLTRVEDNVKRLKLKAR 295

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLF 154
           +I  DA     ++++      RI+ + P +    +       W+             +  
Sbjct: 296 VICGDA--RTPDEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIDQL----VSL 349

Query: 155 QKEVGERITAQ---KNSPHYGRLSVLTG 179
           Q E+ + + AQ     +  Y   SV   
Sbjct: 350 QSEILDAMWAQLKSGGTLVYATCSVTPQ 377


>gi|311742948|ref|ZP_07716756.1| RsmD family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311313628|gb|EFQ83537.1| RsmD family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 183

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL-E 98
               G L+G+ V+++ AG G +    ++ GA  V ++E D++   +++  ++     +  
Sbjct: 38  VSEFGGLEGLRVLDLFAGSGAIGLEAVSRGATLVDLVEHDRRAVQVVRRNATDLGAGVAR 97

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           +    A +              ++ + PY + T+ +   +     P + 
Sbjct: 98  VHLSTAQRFLRT--APAEPYHLVVLDPPYGMATQDVTGLVEVLADPSWC 144


>gi|258380661|emb|CAQ48283.1| hypothetical protein [Planktothrix rubescens NIVA-CYA 98]
          Length = 3020

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 33   LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             N + +I + S   +   V+EIG G G L   L     R     E  ++    L+   +Q
Sbjct: 2491 KNTITRI-KQSQPQE---VLEIGCGTGMLLLQLAPSCCRY-WGTELSERVINDLRTRINQ 2545

Query: 93   HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             P     +    LK    + F+   P+     +  ++
Sbjct: 2546 LPGDWSHL---ILKQQQAQNFDGIEPLSFDTVVLNSV 2579


>gi|289578109|ref|YP_003476736.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           italicus Ab9]
 gi|289527822|gb|ADD02174.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           italicus Ab9]
          Length = 308

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QH 93
           +L++I      +    V +IG G G L+     LGA++V   + D+    + +      +
Sbjct: 166 LLEEIV-----MPESIVFDIGCGSGILSIASSKLGAKEVYAADIDEVSVEVARQNVELNN 220

Query: 94  PNRLEIIQDDAL 105
              +++ + D L
Sbjct: 221 LQNVKVFKSDLL 232


>gi|229195570|ref|ZP_04322336.1| Methyltransferase [Bacillus cereus m1293]
 gi|228587819|gb|EEK45871.1| Methyltransferase [Bacillus cereus m1293]
          Length = 251

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 14/133 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  +  ++   +   V +IG+G G  ++ LL  G   VI +E +     + +    ++P 
Sbjct: 26  IDYLLSANELNENQIVADIGSGTGIFSRQLLESG-LHVIGVEPNDDMRKMAEQSLKRYP- 83

Query: 96  RLEIIQDDA----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--------WISADTW 143
           R + I+  A    LK +      ++          + I  + +          W S D  
Sbjct: 84  RFQSIKATAENTTLKKNSVDLVTVAQAFHWFDKEAFKIECQRILKQKANVALVWNSRDVT 143

Query: 144 PPFWESLTLLFQK 156
            P  +    + QK
Sbjct: 144 SPLIQENAEICQK 156


>gi|195984522|gb|ACG63858.1| ProD [Planktothrix rubescens]
          Length = 3020

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 33   LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             N + +I + S   +   V+EIG G G L   L     R     E  ++    L+   +Q
Sbjct: 2491 KNTITRI-KQSQPQE---VLEIGCGTGMLLLQLAPSCCRY-WGTELSERVINDLRTRINQ 2545

Query: 93   HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             P     +    LK    + F+   P+     +  ++
Sbjct: 2546 LPGDWSHL---ILKQQQAQNFDGIEPLSFDTVVLNSV 2579


>gi|222635785|gb|EEE65917.1| hypothetical protein OsJ_21767 [Oryza sativa Japonica Group]
          Length = 359

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 9/124 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD----QQFFPILKDISSQHPNRLE 98
           +   DG T++++G G G+L+  +    ++  I    +    + F    +       + +E
Sbjct: 129 AQLQDGQTILDVGCGWGSLSLYIAKKYSKCSITGICNSTTQKAFIE--EQCRENELSNVE 186

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           II  D  K + E+ F+    I  I    +    + L   +S          +     K  
Sbjct: 187 IIVADISKFEMERSFD---RIISIEMFEHMKNYKALLKKLSRWMKEDSLLFVHYFCHKTF 243

Query: 159 GERI 162
               
Sbjct: 244 AYHF 247


>gi|213158590|ref|YP_002319888.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           baumannii AB0057]
 gi|213057750|gb|ACJ42652.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           baumannii AB0057]
          Length = 610

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP----ILKDISSQHPNRLE 98
           +   +G  ++E+G G G+LT  +     R  I              IL+    +    +E
Sbjct: 379 AQLKNGQQILELGCGWGSLTLWMAENYPRSQITAV--SNSATQKKHILRQAELRGLTNVE 436

Query: 99  IIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD--TWPPFWESLTLLF 154
           ++  D   L +D +KF  + S         Y +    +  W+ AD   W   +    L +
Sbjct: 437 VLTCDVNVLDLDQDKFDRVVSVEMFEHVRNYQLLFEKIQGWLKADGLLWCHIFCHRFLHY 496

Query: 155 QKEV 158
             EV
Sbjct: 497 PFEV 500


>gi|169795471|ref|YP_001713264.1| hypothetical protein ABAYE1348 [Acinetobacter baumannii AYE]
 gi|215482956|ref|YP_002325161.1| Cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Acinetobacter baumannii AB307-0294]
 gi|239501404|ref|ZP_04660714.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           baumannii AB900]
 gi|260554532|ref|ZP_05826753.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           baumannii ATCC 19606]
 gi|301345793|ref|ZP_07226534.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           baumannii AB056]
 gi|301510485|ref|ZP_07235722.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           baumannii AB058]
 gi|301596630|ref|ZP_07241638.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           baumannii AB059]
 gi|332855210|ref|ZP_08435761.1| methyltransferase domain protein [Acinetobacter baumannii 6013150]
 gi|332872011|ref|ZP_08440398.1| methyltransferase domain protein [Acinetobacter baumannii 6013113]
 gi|169148398|emb|CAM86263.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|213986580|gb|ACJ56879.1| Cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Acinetobacter baumannii AB307-0294]
 gi|260411074|gb|EEX04371.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           baumannii ATCC 19606]
 gi|332727587|gb|EGJ59009.1| methyltransferase domain protein [Acinetobacter baumannii 6013150]
 gi|332731044|gb|EGJ62347.1| methyltransferase domain protein [Acinetobacter baumannii 6013113]
          Length = 348

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP----ILKDISSQHPNRLE 98
           +   +G  ++E+G G G+LT  +     R  I              IL+    +    +E
Sbjct: 117 AQLKNGQQILELGCGWGSLTLWMAENYPRSQITAV--SNSATQKKHILRQAELRGLTNVE 174

Query: 99  IIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD--TWPPFWESLTLLF 154
           ++  D   L +D +KF  + S         Y +    +  W+ AD   W   +    L +
Sbjct: 175 VLTCDVNVLDLDQDKFDRVVSVEMFEHVRNYQLLFEKIQGWLKADGLLWCHIFCHRFLHY 234

Query: 155 QKEV 158
             EV
Sbjct: 235 PFEV 238


>gi|158426170|ref|YP_001527462.1| S-adenosyl-methyltransferase MraW [Azorhizobium caulinodans ORS
           571]
 gi|263446764|sp|A8HZ68|RSMH_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158333059|dbj|BAF90544.1| methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 346

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           G G  T+ +L     +VI I++D       + +  +   RL ++ +    +D 
Sbjct: 45  GAGGYTRAILEAANGRVIAIDRDPTAIAGGQALVEETGGRLTLVHERFSHLDQ 97


>gi|154498551|ref|ZP_02036929.1| hypothetical protein BACCAP_02541 [Bacteroides capillosus ATCC
           29799]
 gi|150272290|gb|EDM99484.1| hypothetical protein BACCAP_02541 [Bacteroides capillosus ATCC
           29799]
          Length = 271

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 13/133 (9%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILK 87
           L   I++ IA      +G   +++G G G LT            ++  D+   ++    +
Sbjct: 87  LSRQIIEGIAAYIELPEGGVGLDVGCGSGALTIACAKRNP-SGRMVGIDRWGVEYASYSR 145

Query: 88  DISSQHP-----NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
            +  ++      + +   Q DA  +D    F   +   + +N  Y+  T      +  ++
Sbjct: 146 KLCERNARAEGVSNITFRQGDARHLD----FPDETFDAVTSNYVYHNITGADKQTLLRES 201

Query: 143 WPPFWESLTLLFQ 155
                        
Sbjct: 202 LRVLKRGGVFAIH 214


>gi|149920777|ref|ZP_01909241.1| Methyltransferase type 11 [Plesiocystis pacifica SIR-1]
 gi|149818430|gb|EDM77881.1| Methyltransferase type 11 [Plesiocystis pacifica SIR-1]
          Length = 253

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 17/143 (11%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +    G+ V+++G G G+LT  +  + G  KV  ++      P+L    +  P  L ++ 
Sbjct: 22  AQLKKGMAVVDVGCGMGSLTAAVARVCGPAKVCGVDI---SEPMLCAARAACP-TLRLLD 77

Query: 102 DDALKVDFEKFFN----------ISSPIRIIANLPYNI--GTRLLFNWISADTWPPFWES 149
            DA      +  +             P    AN+   +  G R +     A    P+   
Sbjct: 78  ADAQTWTPSEPVDRVLSRFGVMFFPDPAAAFANMRGWLGDGGRFVALVWRAMAHNPWIRD 137

Query: 150 LTLLFQKEVGERITAQKNSPHYG 172
              +F++ V     A      + 
Sbjct: 138 AVEVFERHVSTPSYAPGGPGPWS 160


>gi|54291178|dbj|BAD61850.1| putative coclaurine N-methyltransferase [Oryza sativa Japonica
           Group]
          Length = 359

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 9/124 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD----QQFFPILKDISSQHPNRLE 98
           +   DG T++++G G G+L+  +    ++  I    +    + F    +       + +E
Sbjct: 129 AQLQDGQTILDVGCGWGSLSLYIAKKYSKCSITGICNSTTQKAFIE--EQCRENELSNVE 186

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           II  D  K + E+ F+    I  I    +    + L   +S          +     K  
Sbjct: 187 IIVADISKFEMERSFD---RIISIEMFEHMKNYKALLKKLSRWMKEDSLLFVHYFCHKTF 243

Query: 159 GERI 162
               
Sbjct: 244 AYHF 247


>gi|324326782|gb|ADY22042.1| N-methyl-transferase-related protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 245

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 30  LLDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           + + N L+++A+           T++E+GAG G   + +  L  +   V     +  P L
Sbjct: 21  IKNENWLQEVAKEVQEQIGYPFQTMLELGAGNGGFARAMSNLEVKMTTV-----ELVPEL 75

Query: 87  KDISSQHP-NRLEIIQDDALKVDFEKFFNI 115
              + +H  + +EI   D  +++FE+ F++
Sbjct: 76  VMFAKEHSTSDIEIHCADFYEINFEEKFDV 105


>gi|323439039|gb|EGA96771.1| O-methyltransferase family protein [Staphylococcus aureus O11]
 gi|323442818|gb|EGB00443.1| O-methyltransferase family protein [Staphylococcus aureus O46]
          Length = 212

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           ++D   L  I +     +   ++EIG   G  +    ++     V  IE+++      K 
Sbjct: 34  IVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQ 93

Query: 89  ISS--QHPNRLEIIQDDALK 106
             +     N++ II+ +AL+
Sbjct: 94  NLATYHFENQVRIIEGNALE 113


>gi|322709994|gb|EFZ01569.1| sterol 24-c-methyltransferase, putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 400

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
           A   G   G+ V+++G G G   + ++      V  +  ++      K  + +     RL
Sbjct: 140 AAHVGLRKGMKVLDVGCGVGGPAREMVKFAGCHVTGLNINEYQVQRAKSYAEKEGLAERL 199

Query: 98  EIIQDDALKVDFEK 111
           + +Q D +K+ F  
Sbjct: 200 DFVQGDFMKMPFPD 213


>gi|283457455|ref|YP_003362032.1| ubiquinone/menaquinone biosynthesis methylase [Rothia mucilaginosa
           DY-18]
 gi|283133447|dbj|BAI64212.1| methylase involved in ubiquinone/menaquinone biosynthesis [Rothia
           mucilaginosa DY-18]
          Length = 243

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 25/172 (14%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQ+        K+   +  +  G  V+++ AG G  ++     G   +          
Sbjct: 40  SLGQHI----YWRKQAVAAVDAHPGQKVLDVAAGTGVSSEPFADAGVDVIAA-----DLS 90

Query: 84  PILKDISSQHPNRLEIIQDD--ALKVDFEKFFNISSPIRI--IANLPYNIG--------- 130
             + D+  +    +  +Q D  AL  D E F  ++    +  +A+ P  +          
Sbjct: 91  EGMLDVGRRRRPDMTFVQADVTALPFDDETFDAVTMSYGLRNVADYPKALSEIYRVLKPG 150

Query: 131 TRLLFNWISADTWPPFWESLTLLFQK---EVGERITAQKNSPHYGRLSVLTG 179
            R++    S  T+ PF         K    +   I++   S  Y   S++T 
Sbjct: 151 GRIVILEFSTPTFAPFGAVYKNYIMKAIPPIARAISSNPESYEYLAESIITW 202


>gi|262401768|ref|ZP_06078334.1| protein-L-isoaspartate O-methyltransferase [Vibrio sp. RC586]
 gi|262352185|gb|EEZ01315.1| protein-L-isoaspartate O-methyltransferase [Vibrio sp. RC586]
          Length = 208

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLALTPETKVLEIGTGSGYQTAVLAKL-VNHVFTVER----IKTLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D  + ++  +P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWQGWSARAPFDAI 145


>gi|257885613|ref|ZP_05665266.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,501]
 gi|257821469|gb|EEV48599.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,501]
          Length = 201

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              D   V+++G G G +   L     R V +++ +++       ++  +  R +I   D
Sbjct: 57  ELPDEGKVLDVGCGYGPIGLALAFATQRFVEMVDINERAVS----LAQGNAKRNQIEHVD 112

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP-PFWESLTLLFQKEVGERI 162
             + +  +  +  +   I++N P   G +++   ++          +LT++ QK+ G   
Sbjct: 113 IHQSNIYEAVHEETYAAIVSNPPIRAGKKVVHEILTGAYHRLKKGGTLTIVIQKKQGAPS 172

Query: 163 TAQKNSPHYG 172
             +K    +G
Sbjct: 173 AQKKMEETFG 182


>gi|229025778|ref|ZP_04182177.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH1272]
 gi|228735486|gb|EEL86082.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH1272]
          Length = 312

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G TVI++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTVIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVE 212


>gi|229174987|ref|ZP_04302506.1| Ribosomal protein L11 methyltransferase [Bacillus cereus MM3]
 gi|228608448|gb|EEK65751.1| Ribosomal protein L11 methyltransferase [Bacillus cereus MM3]
          Length = 312

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G TVI++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTVIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVE 212


>gi|209964877|ref|YP_002297792.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodospirillum
           centenum SW]
 gi|209958343|gb|ACI98979.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodospirillum
           centenum SW]
          Length = 427

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
           + IA       G  V++IG G G L   L      +V  +   Q+   I +  + +    
Sbjct: 180 RHIAAKLLLRPGQRVLDIGCGWGGLALHLARAADVEVTGVTLSQEQLAIARRRAEEAGLS 239

Query: 95  NRLEIIQDD 103
           +R+     D
Sbjct: 240 DRVRFELAD 248


>gi|171913066|ref|ZP_02928536.1| ribosomal protein L11 methyltransferase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 282

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 35  ILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISS 91
           +L+ + + + S +G   T++++G G G L      LGA +    + D +   + ++ +  
Sbjct: 128 VLRMLVDYAKSKEGQPWTMLDLGTGSGVLAIAAEKLGASEAWGCDFDDKAVRVAQENLVR 187

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
                + I + D LK    + ++      + ANL Y+I   +    + +
Sbjct: 188 NRTQNVVIEEADVLKWKPSRRWD-----CVAANLFYDILEDVFPKIVKS 231


>gi|168012274|ref|XP_001758827.1| protein arginine N-methyltransferase [Physcomitrella patens subsp.
           patens]
 gi|162689964|gb|EDQ76333.1| protein arginine N-methyltransferase [Physcomitrella patens subsp.
           patens]
          Length = 306

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
               V+++GAG G L+      GA+ V  +E         ++I       + + +I+ 
Sbjct: 23  KDKVVLDVGAGTGVLSLFCAKGGAKHVYAVEC-STMAETAREIVKTNGFSDVVTVIKG 79


>gi|160895583|ref|YP_001561165.1| cyclopropane-fatty-acyl-phospholipid synthase [Delftia acidovorans
           SPH-1]
 gi|160361167|gb|ABX32780.1| Cyclopropane-fatty-acyl-phospholipid synthase [Delftia acidovorans
           SPH-1]
          Length = 440

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPN 95
           + IA       G  V++IG G G L++ L  + GA  V  +    +     +  + Q P 
Sbjct: 168 RHIAAKLLVEPGHRVLDIGCGWGGLSRYLAEVAGAGHVTGVTLSGEQLAGARQRAGQSP- 226

Query: 96  RLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRL 133
                  D L    E + +        +   +  ++GTR 
Sbjct: 227 -----CADRLSYRLEDYRDTRGTFDRIVSVGMFEHVGTRF 261


>gi|161528888|ref|YP_001582714.1| methylase [Nitrosopumilus maritimus SCM1]
 gi|160340189|gb|ABX13276.1| putative methylase [Nitrosopumilus maritimus SCM1]
          Length = 178

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 16/98 (16%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNRL 97
           IAE+  + +G   ++IG+G G LT++L    +  V   I  D     +L+  SS     L
Sbjct: 20  IAENIENENGEYALDIGSGSGYLTKLLSENFSLVVGTDINCD-----VLQHQSSYKTQNL 74

Query: 98  EIIQD-DALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
                 DALKV F+          I+ NLPY     +L
Sbjct: 75  ICCNGSDALKVKFD---------FIVCNLPYLATDEIL 103


>gi|154279532|ref|XP_001540579.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412522|gb|EDN07909.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 239

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            ++   V+E+G+G G L+   L  LGAR+V   ++D      +KD + ++      I   
Sbjct: 123 LIEEKNVVELGSGTGLLSMYCLKCLGARRVTATDRDPALISSIKDCAIRNDLSRSRIDAQ 182

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
                +E    +       +  PY
Sbjct: 183 I----WEWGTPLQPNHPPSSKEPY 202


>gi|108801837|ref|YP_642034.1| methyltransferase type 12 [Mycobacterium sp. MCS]
 gi|119870990|ref|YP_940942.1| methyltransferase type 12 [Mycobacterium sp. KMS]
 gi|108772256|gb|ABG10978.1| Methyltransferase type 12 [Mycobacterium sp. MCS]
 gi|119697079|gb|ABL94152.1| Methyltransferase type 12 [Mycobacterium sp. KMS]
          Length = 255

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
              +    ++E+GAG G L++ LL      +V V + D+     +         R  +  
Sbjct: 74  IADVPDPKILELGAGHGGLSRRLLEAHPTAEVTVTDLDEASVAKIAASDLGSHPRARVQV 133

Query: 102 DDALKVDFEK 111
            DA  +D   
Sbjct: 134 MDATAIDAPD 143


>gi|118580522|ref|YP_901772.1| type 12 methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118503232|gb|ABK99714.1| Methyltransferase type 12 [Pelobacter propionicus DSM 2379]
          Length = 565

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE--KDQQFFPILKDISSQHPNRLE 98
                     V+E+G G G +T+ L   GA  V  +E   D+      +    +  N +E
Sbjct: 76  RHVTFTSSDNVLELGCGCGAITRQLGESGAN-VTAVEGNFDRAKCAAAR---CEDLNNVE 131

Query: 99  IIQDDALKVDFEKFFN 114
           +   +   + F+K ++
Sbjct: 132 VFCSNFQDIAFQKQYD 147


>gi|326561510|gb|EGE11854.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           46P47B1]
          Length = 310

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           ++  L    VI+ G G G L    L LGAR+V+ ++ D Q   +L    +   N ++   
Sbjct: 157 AAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQ--AVLATRQNAALNGVDDRL 214

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
              L  +F  +   +  +  +      I   +L   +    + P +  L
Sbjct: 215 LAFLPAEFNDYRTQNPQLADV------ITANILAKPL--IDFAPLFHDL 255


>gi|307941570|ref|ZP_07656925.1| methyltransferase type 11 [Roseibium sp. TrichSKD4]
 gi|307775178|gb|EFO34384.1| methyltransferase type 11 [Roseibium sp. TrichSKD4]
          Length = 217

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 7/124 (5%)

Query: 40  AESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK-DQQFFPILKDIS-SQHPNR 96
                  +G TV+E+G G G NL        + +   ++  DQ      K+I  + + NR
Sbjct: 37  INQLDVPEGGTVLELGCGTGRNLIAAAKRYPSAQFFGLDISDQMLATARKNIEKAGYSNR 96

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE---SLTLL 153
           +++IQ DA        F   +  R+  +   ++   +    +         E   S+   
Sbjct: 97  IKLIQGDASNAPAVSGFGPDAYSRVFYSYTLSMM-PIWREALQTGLANLSGEGKISIVDF 155

Query: 154 FQKE 157
            Q+E
Sbjct: 156 GQQE 159


>gi|302386960|ref|YP_003822782.1| Methyltransferase type 11 [Clostridium saccharolyticum WM1]
 gi|302197588|gb|ADL05159.1| Methyltransferase type 11 [Clostridium saccharolyticum WM1]
          Length = 194

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 8  HSLKTILSHYKIIPKKYMGQNFLLD-LNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           S+  +L++      K       +D   + ++I           V+E+G G G L Q L
Sbjct: 23 SSVTDLLAYDGYEATK-------VDMEEVARQITGRLDLHKNDKVLEVGCGAGALAQYL 74


>gi|292487727|ref|YP_003530600.1| cyclopropane-fatty-acyl-phospholipid synthase [Erwinia amylovora
           CFBP1430]
 gi|292898960|ref|YP_003538329.1| cyclopropane-fatty-acyl-phospholipid synthase [Erwinia amylovora
           ATCC 49946]
 gi|291198808|emb|CBJ45917.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Erwinia
           amylovora ATCC 49946]
 gi|291553147|emb|CBA20192.1| cyclopropane-fatty-acyl-phospholipid synthase [Erwinia amylovora
           CFBP1430]
          Length = 414

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
           +++ +         ++EIG+G G + +        +V      ++ F   +    ++   
Sbjct: 182 QRLCDRLALGPQDHLLEIGSGWGAMAEYAARQYGCRVTTTTISREQFEYCRQRIAAAGLS 241

Query: 95  NRLEIIQDDALKVD 108
           +R+ ++ +D   ++
Sbjct: 242 DRVTVLCEDYRHLN 255


>gi|282862240|ref|ZP_06271303.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
 gi|282563265|gb|EFB68804.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
          Length = 235

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           ++IA        + V+++G G G  TQ L L      V  +E D     + +D  +  P 
Sbjct: 7   EQIAARFPVGRRLRVLDVGMGQG--TQALRLARAGHSVTGLESDDAMLQVARDALTGEPE 64

Query: 95  ---NRLEIIQDD 103
               R+ IIQ D
Sbjct: 65  GIRERMRIIQGD 76


>gi|317049188|ref|YP_004116836.1| methyltransferase small [Pantoea sp. At-9b]
 gi|316950805|gb|ADU70280.1| methyltransferase small [Pantoea sp. At-9b]
          Length = 249

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP--NRLE 98
           +       V++IG+G G +  M+    A +V    +E D       ++     P   R+ 
Sbjct: 44  APVAGVRRVLDIGSGSGLIALMIAQRTADEVQIDAVELDADAAQQAQENVQASPWAARVT 103

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + Q D  +              I++N PY
Sbjct: 104 LHQADIAQWADAC---EQRYSLIVSNPPY 129


>gi|255083589|ref|XP_002508369.1| predicted protein [Micromonas sp. RCC299]
 gi|226523646|gb|ACO69627.1| predicted protein [Micromonas sp. RCC299]
          Length = 434

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL D+ +  +  E+ G    + V+ +GA  G L + L+  GA  V+VI+  Q       +
Sbjct: 83  FLADVALGGRSVEAKGEGSSLRVLVVGAETGKLAKSLMDRGASHVLVIDHSQAMLDRAAE 142

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           +         +     L+ D         P   +
Sbjct: 143 LFDPPSTVGNVPCVRFLRTDVSDVKPYEGPFDAV 176


>gi|167836581|ref|ZP_02463464.1| hypothetical protein Bpse38_08836 [Burkholderia thailandensis
           MSMB43]
          Length = 256

 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 36  LKKIA---ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           L+ IA          G T++EIG G G  ++ +         ++  D      L  +   
Sbjct: 27  LQDIACMHRFLRPSPGETILEIGGGSGYFSRAIAAALGPSGRLVVTDP-SIEQLDALRGM 85

Query: 93  HPNRLEIIQ--DDALKVDFEKFFNISSPIRIIANL 125
             + + ++Q   DAL +D   F  I S   I    
Sbjct: 86  PDSNIRVVQQAADALDLDTRDFDAIWSRGAIHHVP 120


>gi|326427887|gb|EGD73457.1| hypothetical protein PTSG_05160 [Salpingoeca sp. ATCC 50818]
          Length = 428

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 12/149 (8%)

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALKVDFEKFFNIS 116
            G  T  L     +    +E +++  P+L+        R + ++  DAL V      N  
Sbjct: 142 LGGNTFSLQRRF-KNTYALELEEERIPLLEHNLRVLGARGVNVVHGDALDVVRVPVDNGG 200

Query: 117 SPIRIIANLPYN--IGTRLLFNWI----SADTWPPFWESLTLLFQKEVGERITAQKNSPH 170
            P         N         NW+    +    P ++ ++      E  +   A      
Sbjct: 201 KPKGATTAADNNGKNSGSEARNWVVRRRTTRELPRWFAAVVADPPWEGIDYDKAGPK--- 257

Query: 171 YGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             RLS              +SP V    P
Sbjct: 258 RLRLS-TVDLADWVVYASAVSPVVMCKVP 285


>gi|312171840|emb|CBX80097.1| cyclopropane-fatty-acyl-phospholipid synthase [Erwinia amylovora
           ATCC BAA-2158]
          Length = 414

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
           +++ +         ++EIG+G G + +        +V      ++ F   +    ++   
Sbjct: 182 QRLCDRLALGPQDHLLEIGSGWGAMAEYAARQYGCRVTTTTISREQFEYCRQRIAAAGLS 241

Query: 95  NRLEIIQDDALKVD 108
           +R+ ++ +D   ++
Sbjct: 242 DRVTVLCEDYRHLN 255


>gi|254418181|ref|ZP_05031905.1| Methyltransferase small domain family [Brevundimonas sp. BAL3]
 gi|196184358|gb|EDX79334.1| Methyltransferase small domain family [Brevundimonas sp. BAL3]
          Length = 249

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS--SQHPNRLEIIQ 101
              G  + E G G G +   +    A   +  +E+D     + ++ +  +Q  +R+ I  
Sbjct: 42  PRSGDRLFEAGCGAGAVLMQIAARHAGVSLTGLERDSVAAGLARENADLNQSADRIRIFD 101

Query: 102 DDALKVDFEKFFNISSPIRIIANLPY 127
            D    D  +  ++      ++N P+
Sbjct: 102 GDV--ADGFRPLDLPPFDWAVSNPPF 125


>gi|153006958|ref|YP_001381283.1| protein-L-isoaspartate O-methyltransferase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030531|gb|ABS28299.1| protein-L-isoaspartate O-methyltransferase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 306

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  +A++     G  V+E+G+G G    +L  L A  V  IE + +      +  ++
Sbjct: 159 PYVVAFMAQALALRGGERVLEVGSGSGYAAAVLAHL-AGAVYGIELEPELHARSVETLAE 217

Query: 93  H-PNRLEIIQDD 103
                + + + D
Sbjct: 218 LGYGNVHLRRGD 229


>gi|15897476|ref|NP_342081.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           solfataricus P2]
 gi|284174793|ref|ZP_06388762.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           solfataricus 98/2]
 gi|6015918|emb|CAB57745.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813719|gb|AAK40871.1| Ribosomal protein L11 methyltransferase, putative [Sulfolobus
           solfataricus P2]
 gi|261602236|gb|ACX91839.1| ribosomal protein L11 methyltransferase, putative [Sulfolobus
           solfataricus 98/2]
          Length = 161

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK-DQQFFPILKDIS 90
             +++++ E + +     V ++G G G  +   +     +K I +E  D++    L +I 
Sbjct: 14  EKVVRRMLEIAKASQDDIVYDLGCGDGRIIITAVKDFNVKKAIGVEINDERIREALANIE 73

Query: 91  S-QHPNRLEIIQDDALKVDFEK 111
                 R  I++ +  +VD  +
Sbjct: 74  KNGVTGRASIVKGNFFEVDISE 95


>gi|20807438|ref|NP_622609.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|38605369|sp|Q8RB66|PRMA_THETN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|20515962|gb|AAM24213.1| Ribosomal protein L11 methylase [Thermoanaerobacter tengcongensis
           MB4]
          Length = 309

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           L+ I +      G  V ++G G G L+     LGA  V   + D+    I ++    +  
Sbjct: 167 LEDIVK-----PGAIVFDVGCGSGILSIAASKLGASYVYGADVDEMAVKIARENVKLNGL 221

Query: 95  NRLEIIQDDALK 106
             +EI Q D LK
Sbjct: 222 ENVEIFQSDLLK 233


>gi|146297419|ref|YP_001181190.1| O-methyltransferase-like protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410995|gb|ABP67999.1| O-methyltransferase-like protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 237

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL----TLGARKVIVIEKDQQFF--PILKDISSQHP 94
           +         V+E   G GNL   +L        +K+  +E  ++     IL    +   
Sbjct: 32  DFIEVKKNDIVVEF--GTGNLIIPILLWAKNKKFKKLYALEIQKEVCELAILNRNINNLQ 89

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +++E+I  D LK D  K F       +  N PY
Sbjct: 90  DKIEVINAD-LK-DALKIFGSEFANVVFTNPPY 120


>gi|76786841|ref|YP_330524.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           A909]
 gi|77405071|ref|ZP_00782171.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           H36B]
 gi|123601157|sp|Q3JYX9|PRMA_STRA1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|76561898|gb|ABA44482.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           A909]
 gi|77176365|gb|EAO79134.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           H36B]
          Length = 317

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKDIYAFDLDVVAVRVAQENIDMNPGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|326575307|gb|EGE25235.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           CO72]
          Length = 310

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           ++  L    VI+ G G G L    L LGAR+V+ ++ D Q   +L    +   N ++
Sbjct: 157 AAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQ--AVLATRQNAALNGVD 211


>gi|326571411|gb|EGE21426.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis BC7]
 gi|326576608|gb|EGE26515.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           101P30B1]
          Length = 310

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           ++  L    VI+ G G G L    L LGAR+V+ ++ D Q   +L    +   N ++
Sbjct: 157 AAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQ--AVLATRQNAALNGVD 211


>gi|326567542|gb|EGE17657.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis BC1]
          Length = 310

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           ++  L    VI+ G G G L    L LGAR+V+ ++ D Q   +L    +   N ++
Sbjct: 157 AAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQ--AVLATRQNAALNGVD 211


>gi|326565377|gb|EGE15555.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           12P80B1]
          Length = 310

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           ++  L    VI+ G G G L    L LGAR+V+ ++ D Q   +L    +   N ++
Sbjct: 157 AAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQ--AVLATRQNAALNGVD 211


>gi|322703644|gb|EFY95250.1| hypothetical protein MAA_09326 [Metarhizium anisopliae ARSEF 23]
          Length = 293

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 9/115 (7%)

Query: 51  VIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           +++IG   G   + L   G    ++   +   +F  I  ++          +  D L  D
Sbjct: 109 ILDIGCCIGQALRHLAHKGVHPSRLYGTDLRPEFIRIGNELFGDEQRGPTFVAGDVLNAD 168

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
                 +   + +I    +       F+  + D      E +    Q   G+ + 
Sbjct: 169 DSSLKELDGKVTLIHAAYF-------FHLFTWDDQVRIGERMVRFLQPGTGDAVV 216


>gi|322392143|ref|ZP_08065605.1| methyltransferase domain protein [Streptococcus peroris ATCC
           700780]
 gi|321145043|gb|EFX40442.1| methyltransferase domain protein [Streptococcus peroris ATCC
           700780]
          Length = 196

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 30/174 (17%)

Query: 25  MGQN--FLLDLNI-LKKIA--------ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+                G  ++++G G G +   L+     + 
Sbjct: 24  LGQKMTFLTDAGVFSKKMIDFGSQLLLRCLDIDKGEKILDVGCGYGPIGLSLVKAYGVQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +       +F        +I+N P   G ++
Sbjct: 84  TMVDINNRALDLAQQNAVKNNVQATIFQSNIYDQVEGQF------DHVISNPPIRAGKQV 137

Query: 134 LFNWISADTWPPFWES-LTLLFQK------------EVGERITAQKNSPHYGRL 174
           +   I        +   LT++ QK            EV       K    Y  L
Sbjct: 138 VHEIIEKSIIYLVYGGDLTIVIQKKQGAPSAKNKMEEVFGNCEVVKKDKGYYIL 191


>gi|297156415|gb|ADI06127.1| Spermine synthase [Streptomyces bingchenggensis BCW-1]
          Length = 680

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQD 102
                V+ IGAG GN   + L  GA++V  +E D +   I  D+    P    R+ +  D
Sbjct: 267 NPHRRVLVIGAGNGNDVAVALAHGAQRVDAVEIDPRLRQIGADLHPDRPYDDPRVHVHID 326

Query: 103 D 103
           D
Sbjct: 327 D 327


>gi|253826208|gb|ACT36392.1| hypothetical protein [uncultured bacterium L11E10]
          Length = 358

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 12/137 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ----FFPILKDISSQHPNRLE 98
           +  ++   ++E+G G G+LT  +     + +I    + +    F         +    +E
Sbjct: 128 AELVNASRILELGCGWGSLTMWMAERYPKAMITAVSNSRSQKDFIE--ARCRERAIFNVE 185

Query: 99  IIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           +I  D  AL++  E F  + S         Y      +  W+     P     + +   +
Sbjct: 186 VITADVNALQLPEEMFDRVISIEMFEHMRNYQALLSRVATWLK----PGGKLFVHIFCHR 241

Query: 157 EVGERITAQKNSPHYGR 173
           E+      + +    GR
Sbjct: 242 ELLYLFETEGSENWMGR 258


>gi|169334269|ref|ZP_02861462.1| hypothetical protein ANASTE_00667 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258986|gb|EDS72952.1| hypothetical protein ANASTE_00667 [Anaerofustis stercorihominis DSM
           17244]
          Length = 315

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP---ILKDISSQHPNRLEIIQ 101
              G  VI++G G G L+   + LG+  V  ++ D         L  I +   ++ ++  
Sbjct: 176 IKGGEDVIDVGCGSGILSIAAVKLGSSHVTGVDIDPMCIETSSYLSKI-NHVEDKFDVFI 234

Query: 102 DD 103
            D
Sbjct: 235 GD 236


>gi|329297697|ref|ZP_08255033.1| methyltransferase small [Plautia stali symbiont]
          Length = 249

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 66/216 (30%), Gaps = 30/216 (13%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIA-------ESSGSLDGITVIEIG 55
           M+      + +L       K    Q F+       K+          +       +++IG
Sbjct: 1   MSQPQPPARALLRKDGFTFK----QFFVAHDRCAMKVGTDGVLLGAWAPVAGVRRILDIG 56

Query: 56  AGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEK 111
            G G +  ML       V    +E ++      ++  +  P  +R+ +   D +    + 
Sbjct: 57  CGSGLIALMLAQRTPDDVSIDAVELERSAAAQAQENVAASPWAHRIAVHAQDIVSWREQA 116

Query: 112 FFNISSPIRIIANLPY---NIGT----RLLFNWISADTWPPFWESLTLLFQKE--VGERI 162
                    I++N P+    + +    R      +    P        L ++E      +
Sbjct: 117 ---EKRYSLIVSNPPFFTPGMASASVERDTARSTATLDHPTLLRCAAQLLEEEGLFCVVL 173

Query: 163 TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            A         L+   GW  +     D++P+   P 
Sbjct: 174 PADAGENLI-ALARAEGWHLRYRY--DVAPYAQRPP 206


>gi|329925612|ref|ZP_08280453.1| methyltransferase small domain protein [Paenibacillus sp. HGF5]
 gi|328939741|gb|EGG36083.1| methyltransferase small domain protein [Paenibacillus sp. HGF5]
          Length = 201

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 40  AESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NR 96
            ++        V+++G G G   LT   +      V +I+ + +   + K+ + ++    
Sbjct: 51  IDAMDFGQDAQVLDVGCGYGPIGLTAARMASQGH-VTMIDINSRAVELAKENAKRNGIIN 109

Query: 97  LEIIQDDALKVDFEKFFNI 115
           + I++ D  +   ++ F++
Sbjct: 110 VTILESDLFEAVKDQLFDV 128


>gi|240136876|ref|YP_002961343.1| Excinuclease ABC, A subunit [Methylobacterium extorquens AM1]
 gi|240006840|gb|ACS38066.1| Excinuclease ABC, A subunit [Methylobacterium extorquens AM1]
          Length = 892

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +I   +       VI++G G GNL   ++  G  + +   +  +  P L+D    +  +
Sbjct: 831 RIVAGA-----DHVIDVGPGAGNLGGTIVAAGHPEDVAEARGSRTAPYLRDELMAYAGQ 884


>gi|214003847|gb|ACJ60967.1| VEG25 [uncultured soil bacterium]
          Length = 279

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
            V+E+ AG G LT  LL LG  +V  +E   +    L+   ++ P  ++
Sbjct: 70  PVLELAAGAGRLTFPLLDLG-LEVTALELSAKMVATLRTRLAEAPAEVQ 117


>gi|254471800|ref|ZP_05085201.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
           JE062]
 gi|211959002|gb|EEA94201.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
           JE062]
          Length = 243

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 22/105 (20%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +F LD     KI            ++IGA  G  TQ+LL  GA+ V  I+          
Sbjct: 71  HFALDP--ADKIC-----------LDIGASTGGFTQVLLEQGAKVVHAIDV------GHD 111

Query: 88  DISSQHPNRLEIIQDDAL---KVDFEKFFNISSPIRIIANLPYNI 129
            ++ +  N   +I+ D L   ++  E          +      ++
Sbjct: 112 QLAEKISNDPRVIRKDGLNARELTLEDLEGQHPEFLVSDVSFISL 156


>gi|145592125|ref|YP_001154127.1| DNA topoisomerase VI subunit B [Pyrobaculum arsenaticum DSM 13514]
 gi|145283893|gb|ABP51475.1| DNA topoisomerase VI, B subunit [Pyrobaculum arsenaticum DSM 13514]
          Length = 528

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 55/168 (32%), Gaps = 27/168 (16%)

Query: 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            +  N  + ++ +         +  +   +  +  G  + A+K    Y R + +      
Sbjct: 142 MIDTNANSPIILDRREYPNKYRWHGTAVKVVLE--GNWLGAKKRIEDYLRRTAIIAPYA- 198

Query: 184 ATMMFD-------ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKT 236
             ++F        +        P     +       +P    ++++K++  ++   R  T
Sbjct: 199 -EIVFKGPDMDLWLKRRTTKLPPAPKEGL------PHPKSVDVDTIKQMLLDS---RGMT 248

Query: 237 LRQSLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNILT 277
           L + L            +  L  AG   N +A  L+ E+  R+   + 
Sbjct: 249 LLEFLTENFDAVGEGTAKAFLEWAGFNPNAKATALTPEELVRLVEKMK 296


>gi|110835424|ref|YP_694283.1| hypothetical protein ABO_2563 [Alcanivorax borkumensis SK2]
 gi|110648535|emb|CAL18011.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 210

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-HPNRLEIIQDDAL 105
            G+ V+++ AG G L    L+ GA + +++EK ++    L+   +     RL +   DAL
Sbjct: 68  PGLRVLDLFAGSGALGAEALSRGACEAVLVEKQRERSADLRRQLTPLFEGRLTVQCADAL 127

Query: 106 KVDFEKFFNISSPI-RIIANLPYNIG 130
                       P   +  + PY++G
Sbjct: 128 ----SWLPTQRQPFDLVFIDPPYDLG 149


>gi|53804498|ref|YP_113675.1| protein-L-isoaspartate O-methyltransferase [Methylococcus
           capsulatus str. Bath]
 gi|53758259|gb|AAU92550.1| protein-L-isoaspartate O-methyltransferase [Methylococcus
           capsulatus str. Bath]
          Length = 219

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + +         V+EIGAG G     +L+   ++V  +E   +      +   +
Sbjct: 62  PFIVALMTDLLNPEKESVVLEIGAGSGY-QAAVLSRLVKRVYTVEIIPELGEQAAERLKE 120

Query: 93  HPNR-LEIIQDD 103
              R +E+   D
Sbjct: 121 LGYRNVEVRIGD 132


>gi|328554280|gb|AEB24772.1| ribosomal protein L11 methyltransferase [Bacillus amyloliquefaciens
           TA208]
 gi|328912677|gb|AEB64273.1| Ribosomal protein L11 methyltransferase [Bacillus amyloliquefaciens
           LL3]
          Length = 311

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           L++I        G  VI++G G G L+     L A  V   + D       +
Sbjct: 169 LERIV-----QKGDRVIDVGTGSGILSIAAAMLEAESVHAYDLDPVAVESAR 215


>gi|323491503|ref|ZP_08096685.1| tRNA (adenine-N(6)-)-methyltransferase [Vibrio brasiliensis LMG
           20546]
 gi|323314257|gb|EGA67339.1| tRNA (adenine-N(6)-)-methyltransferase [Vibrio brasiliensis LMG
           20546]
          Length = 235

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 12/93 (12%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-KD--QQFFPILKDIS--SQHPNRL 97
                  ++++IG G G L   L+      ++ IE  D  Q      +     S   +RL
Sbjct: 34  IDLAGYKSLLDIGTGTGLL--ALMCAQRSHLLNIEAIDIEQNAIEAAQANFDASAWSDRL 91

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +   D LK  F+  F       II N PY   
Sbjct: 92  TLHHADVLKHPFKHSFE-----AIICNPPYFNS 119


>gi|292490451|ref|YP_003525890.1| cyclopropane-fatty-acyl-phospholipid synthase [Nitrosococcus
           halophilus Nc4]
 gi|291579046|gb|ADE13503.1| Cyclopropane-fatty-acyl-phospholipid synthase [Nitrosococcus
           halophilus Nc4]
          Length = 380

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISSQHP-NRLEII 100
           +   DG+ ++E+G G G L+  +  L  R  I    +       ++  + Q   + LEII
Sbjct: 148 AQLEDGLRILELGCGWGALSLWMAALYPRSTITAVSNSHSQSHYIRQRAEQFGLSNLEII 207

Query: 101 QDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
             D      ++ F+ I S         Y      + +W+     P     + +   ++V 
Sbjct: 208 TADMNDFSTQERFDRIVSVEMFEHMRNYRWLLARIHHWLK----PSGKFFMHIFCHRDVP 263

Query: 160 ERITAQKNSPHYGR 173
                Q  S   GR
Sbjct: 264 YAFEDQGPSDWMGR 277


>gi|260890047|ref|ZP_05901310.1| hypothetical protein GCWU000323_01209 [Leptotrichia hofstadii
           F0254]
 gi|260860070|gb|EEX74570.1| cyclopropane-fatty-acyl-phospholipid synthase [Leptotrichia
           hofstadii F0254]
          Length = 249

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + + E         ++++G G G LT+ +   G  KV+ ++  Q+F    + I       
Sbjct: 24  EDLIEWLNPQKDEYILDLGCGDGVLTKKITEYGC-KVLGLDGSQKFVEAARKIG------ 76

Query: 97  LEIIQDDALKVDFEKFFN 114
           +E IQ DA  + FE  F+
Sbjct: 77  IEAIQGDAQNMKFENEFD 94


>gi|260575023|ref|ZP_05843024.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodobacter sp. SW2]
 gi|259022645|gb|EEW25940.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodobacter sp. SW2]
          Length = 217

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 26  GQNF-------LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           GQN        +LD   L K+ ++        V+++G G G  T ++  L    V
Sbjct: 50  GQNVQLAAGRVVLDPRTLAKLLDALDIQPTELVLDLGCGLGYSTAVIARLAEAVV 104


>gi|289580749|ref|YP_003479215.1| methyltransferase type 12 [Natrialba magadii ATCC 43099]
 gi|289530302|gb|ADD04653.1| Methyltransferase type 12 [Natrialba magadii ATCC 43099]
          Length = 248

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
              V+E+G G G +   L   G   V  I+        L+D ++Q    +++ Q D    
Sbjct: 35  DGPVLEVGCGTGRIYLELRRAGVD-VTGIDISADSLDALRDKATQDDLAVDVRQADMRTF 93

Query: 108 DFEK 111
           D E 
Sbjct: 94  DPEP 97


>gi|218778721|ref|YP_002430039.1| methyltransferase type 12 [Desulfatibacillum alkenivorans AK-01]
 gi|218760105|gb|ACL02571.1| Methyltransferase type 12 [Desulfatibacillum alkenivorans AK-01]
          Length = 280

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 19/143 (13%)

Query: 38  KIAESSGSLDGIT---VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +IA+    L       +++IGAGPG L   L    A  V  +E        LK+I   + 
Sbjct: 52  RIAQMLEDLTADNCLRILDIGAGPGILAVPLAKQ-AELVTAVEPAAGMIQRLKEIIQTNN 110

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            + L I++     VD E          ++ +             +  D      E +   
Sbjct: 111 ISNLSIVEKRWEDVDLESDLQ-GPYDAVVCSFA-----------LGMDDVRAALEKMAAA 158

Query: 154 FQKEVGERITAQ--KNSPHYGRL 174
             K V     A+    + HY  L
Sbjct: 159 CNKTVYLYWFAEDVSWNKHYKAL 181


>gi|159149040|dbj|BAF92588.1| methyltransferase [Streptomyces pactum]
 gi|212379246|gb|ACJ24862.1| HemK family methyltransferase [Streptomyces pactum]
          Length = 358

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF--FPILKD 88
            D   L ++  +    D  T +++G G G L       GA  V+ ++ + +      +  
Sbjct: 135 TDSMTLSRLVAA--RRDVRTALDLGCGTGILGLSAARNGAD-VVSVDVNPECTAAATVNA 191

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +    RL  ++ D + +D ++ F++     +I+N P
Sbjct: 192 HINGLGERLTAVEGDIMSLDLDRRFDL-----VISNPP 224


>gi|160940894|ref|ZP_02088234.1| hypothetical protein CLOBOL_05786 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436138|gb|EDP13905.1| hypothetical protein CLOBOL_05786 [Clostridium bolteae ATCC
           BAA-613]
          Length = 318

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQ 101
                 V+++G G G L    L LGA +V   + D+     +++    +    +R  ++Q
Sbjct: 170 VNRDTLVLDVGTGSGILGITALKLGAEEVWGTDLDENAINAVRENLEANSIPEDRFHVLQ 229

Query: 102 DDA 104
            + 
Sbjct: 230 GNI 232


>gi|154686805|ref|YP_001421966.1| ribosomal protein L11 methyltransferase [Bacillus amyloliquefaciens
           FZB42]
 gi|166223394|sp|A7Z6V9|PRMA_BACA2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|154352656|gb|ABS74735.1| YqeT [Bacillus amyloliquefaciens FZB42]
          Length = 311

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           L++I        G  VI++G G G L+     L A  V   + D       +
Sbjct: 169 LERIV-----QKGDRVIDVGTGSGILSIAAAMLEAESVHAYDLDPVAVESAR 215


>gi|330834044|ref|YP_004408772.1| precorrin-6B methylase 2-like protein [Metallosphaera cuprina
          Ar-4]
 gi|329566183|gb|AEB94288.1| precorrin-6B methylase 2-like protein [Metallosphaera cuprina
          Ar-4]
          Length = 182

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 36 LKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
          ++ I         G  ++EIG G G +T  L  +G   V +   D
Sbjct: 22 IRAISISKMRIFPGCKILEIGTGTGAMTSDLERMGCYVVSLEFND 66


>gi|313677810|ref|YP_004055806.1| methyltransferase small [Marivirga tractuosa DSM 4126]
 gi|312944508|gb|ADR23698.1| methyltransferase small [Marivirga tractuosa DSM 4126]
          Length = 237

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 41/80 (51%), Gaps = 8/80 (10%)

Query: 51  VIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKV 107
           V+E+G G G L+ ML    +  K+  +E +   +   ++    S+   RL+++ +D ++ 
Sbjct: 40  VLEVGTGTGVLSLMLAQRFSDIKIDAVEINPIAYEEAQNNFKNSKWNARLKVVLEDFIEF 99

Query: 108 DFEKFFNISSPIRIIANLPY 127
           + +  +++     I +N P+
Sbjct: 100 ETDHKYDL-----IFSNPPF 114


>gi|257055191|ref|YP_003133023.1| HemK-like methylase [Saccharomonospora viridis DSM 43017]
 gi|256585063|gb|ACU96196.1| HemK-related putative methylase [Saccharomonospora viridis DSM
           43017]
          Length = 218

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI--LKDISSQHPNRLEIIQD 102
              G  V+++G G G L    +  GA  V  ++   +      L     + P  + + + 
Sbjct: 28  LRSGDRVLDVGTGTGALAVAAVRSGATDVTAVDVSLRALAATWLNARLHRLP--VRVRRA 85

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D  +      F++     ++AN PY
Sbjct: 86  DVTERPPHGRFDL-----VLANPPY 105


>gi|271968988|ref|YP_003343184.1| hypothetical protein Sros_7775 [Streptosporangium roseum DSM 43021]
 gi|270512163|gb|ACZ90441.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 251

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 19/126 (15%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKD 88
           L+D        E++G      VI++G GPG+L+  LL       V+ ++ D    P+L  
Sbjct: 32  LIDA------VEAAG-RPDPLVIDLGCGPGSLSARLLERLPGATVVSVDAD----PLLLG 80

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           +       L  +  D     +     +  P  +       + T  L +WIS    P  + 
Sbjct: 81  LGRAAYPHLRFVSLDLRTPGWSDSLGLDGPADVA------VSTTAL-HWISGSDLPKMYA 133

Query: 149 SLTLLF 154
            L  + 
Sbjct: 134 ELATVL 139


>gi|283796013|ref|ZP_06345166.1| SAM-dependent methyltransferase [Clostridium sp. M62/1]
 gi|291076658|gb|EFE14022.1| SAM-dependent methyltransferase [Clostridium sp. M62/1]
          Length = 282

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 10/90 (11%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQ 101
              G  V+EIGAG G  +  L   G R   V   D        +I   H      + I +
Sbjct: 43  IKPGDRVLEIGAGTGRYSHALAHRGYRVDAVELVDHNI-----EIFRSHITPDENVSITR 97

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            +AL  D   F +    I ++    Y++ +
Sbjct: 98  GNAL--DLSMFPDGQYDITLLLGPLYHLYS 125


>gi|226944720|ref|YP_002799793.1| hypothetical protein Avin_26420 [Azotobacter vinelandii DJ]
 gi|226719647|gb|ACO78818.1| hypothetical protein Avin_26420 [Azotobacter vinelandii DJ]
          Length = 265

 Score = 37.1 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           +  G     +++++GAGPG L        AR+V  ++  +     L+  ++ 
Sbjct: 47 VDILGLRPDESLLDVGAGPGRLAIP-AARRARQVTALDISRPMLDELERNAAA 98


>gi|332289602|ref|YP_004420454.1| ribosomal protein L11 methyltransferase [Gallibacterium anatis
           UMN179]
 gi|330432498|gb|AEC17557.1| ribosomal protein L11 methyltransferase [Gallibacterium anatis
           UMN179]
          Length = 293

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 8/120 (6%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDAL 105
             TVI+ G G G L    L LGA+  I I+ D Q     ++ + ++   +RL++     L
Sbjct: 159 DKTVIDFGCGSGILAIAALKLGAKNAIGIDIDPQAIQASRENAKRNGVEDRLQLY----L 214

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
             D          +  I   P      ++ + +          S  L  Q E      A 
Sbjct: 215 SADTPNDLKADVVVANILAGPLKELAPIISSLV--IPQGKLGLSGVLFTQSEAVAAAYAD 272


>gi|330501403|ref|YP_004378272.1| ArsR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328915689|gb|AEB56520.1| ArsR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 333

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
            G T +EIG G G     L    A +V  ++       +     +    + +E+   DAL
Sbjct: 160 PGATALEIGPGDGAFLPELARRFA-QVTALDNSPAMLELASQRCAAIGLHNVELKLADAL 218

Query: 106 K 106
           +
Sbjct: 219 Q 219


>gi|325688554|gb|EGD30571.1| ribosomal protein L11 methyltransferase [Streptococcus sanguinis
           SK72]
          Length = 318

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+ +   + D+    + ++    +P+   + +   
Sbjct: 170 LRGGETVLDVGTGSGVLSIGSSLLGAKDIYAYDLDEVAVRVAQENIELNPDMENIHVAPG 229

Query: 103 DALK 106
           D L+
Sbjct: 230 DLLR 233


>gi|312136346|ref|YP_004003683.1| methyltransferase [Methanothermus fervidus DSM 2088]
 gi|311224065|gb|ADP76921.1| methyltransferase [Methanothermus fervidus DSM 2088]
          Length = 225

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 21  PKKYMGQNFLLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           PK  + Q +L   NI   +   A+  G ++   V+++G G G  +     LGA+KV+ I+
Sbjct: 30  PKPELEQ-YLTPANIAADLLWNAKILGDINKKVVVDLGCGTGIFSIGSSLLGAKKVLGID 88

Query: 78  KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNI 129
            D+      + +S +     +  ++ + LK+  ++ F  +     +I N P+ I
Sbjct: 89  IDEDVIKTAESLSRELKLKNILFLKKNVLKISKKEIFQIVGEVDTLIQNPPFGI 142


>gi|298675685|ref|YP_003727435.1| protein-L-isoaspartate O-methyltransferase [Methanohalobium
           evestigatum Z-7303]
 gi|298288673|gb|ADI74639.1| protein-L-isoaspartate O-methyltransferase [Methanohalobium
           evestigatum Z-7303]
          Length = 216

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 26  GQNFLLD-LNILKKIAESSGSLDGITVIEIGAGPG----NLTQMLLTLGARKVIVIEKDQ 80
           GQN  +   +++  + +     +G  V+E+GAG G     +++++   G   V  IE  +
Sbjct: 53  GQNQTISAPHMVAMMCDLLDLSEGQVVLEVGAGSGYHAAVISELVGESG--HVYSIECIE 110

Query: 81  QFFPILK-DISSQHPNRLEIIQDD 103
           +     + ++ +   + + +I  D
Sbjct: 111 ELVNFSRNNLKNAGYSNVTVIHGD 134


>gi|298244341|ref|ZP_06968147.1| Protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Ktedonobacter racemifer DSM 44963]
 gi|297551822|gb|EFH85687.1| Protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Ktedonobacter racemifer DSM 44963]
          Length = 383

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +++ ++ +      G+ V+E+G G G    L   L T   R +  I+ D       +  
Sbjct: 91  PSVMARMLDVLDVQAGMKVLEVGTGTGYNAALLAQL-TKDPRFITTIDIDSTALEEARQA 149

Query: 90  SSQHPNR--LEIIQDD 103
             +  N   + I   D
Sbjct: 150 LKEVGNEDGMTIATGD 165


>gi|295837088|ref|ZP_06824021.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. SPB74]
 gi|295826354|gb|EFG64797.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. SPB74]
          Length = 373

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            V+E+G G G  T +L        V   E D+    + +    +     E+   D L
Sbjct: 103 RVLEVGTGTGWTTALLAHRLSVPAVTSFEIDESVAALARQRLRRFGLTPEVRVGDGL 159


>gi|269836250|ref|YP_003318478.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269785513|gb|ACZ37656.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 208

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQ 92
           I +      G+ V++ GAG G LT       A   +V+ ++   +    L+  ++ 
Sbjct: 52  ILDRLDLRPGMRVLDAGAGTGRLTIPAARRVAPNGEVVALDIQPEMLAKLEQRAAA 107


>gi|169633203|ref|YP_001706939.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Acinetobacter baumannii SDF]
 gi|226705028|sp|B0VLL0|PRMA_ACIBS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|169151995|emb|CAP00859.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Acinetobacter baumannii]
          Length = 301

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 11/138 (7%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
               VI+ G G G L    L LGA+KV   + D Q     K  +  +     +     L 
Sbjct: 159 KNKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVLATKQNAELNGVLDRLYVG--LP 216

Query: 107 VDFEKFFNISSPIRIIANL---PYNIGTRLLFNWISADTWPPFWESL------TLLFQKE 157
            +F++ F       ++AN+   P           + +D        +            E
Sbjct: 217 EEFDQEFKPQQADVLVANILAGPLMALAPEFAKLLKSDGDFALAGVIEEQVVDVSGVYSE 276

Query: 158 VGERITAQKNSPHYGRLS 175
             + +  +K   ++ R+S
Sbjct: 277 FFDILDVEKREENWCRIS 294


>gi|157813736|gb|ABV81613.1| putative protein arginine N-methyltransferase 1 [Forficula
           auricularia]
          Length = 246

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
                  V++IG G G L+      GA +VI IE         K+I   +   + + I++
Sbjct: 19  HLFKDKVVLDIGCGTGILSMFAAKAGAARVIGIEC-SNIVEYAKEIVEANNLSDVVTIVK 77

Query: 102 DDALKVDFE 110
               +VD  
Sbjct: 78  GKVEEVDLP 86


>gi|163735095|ref|ZP_02142531.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter
           litoralis Och 149]
 gi|161391553|gb|EDQ15886.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter
           litoralis Och 149]
          Length = 402

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 13/112 (11%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           + +  G+  G  ++EIG G G   +        +V  +   ++ F   K+   +      
Sbjct: 177 MVDEIGAKPGDHILEIGCGWGGFAEYAAKERGLRVTCLTISEEQFKYAKERIEKAG---- 232

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
               D +    + + + S            I +  +F  +    WP ++  +
Sbjct: 233 --LSDLVDFKLQDYRDESGSYD-------GIASIEMFEAVGEKYWPTYFSKV 275


>gi|149184651|ref|ZP_01862969.1| hypothetical protein ED21_28073 [Erythrobacter sp. SD-21]
 gi|148831971|gb|EDL50404.1| hypothetical protein ED21_28073 [Erythrobacter sp. SD-21]
          Length = 239

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
           + +    G+TV +IGAG G  T  L        +V+  + DQ+    L     ++
Sbjct: 62  DLAEIEPGMTVADIGAGNGYYTVRLAERVGSEGRVLAQDIDQRALDRLGRRVERY 116


>gi|91774355|ref|YP_567047.1| methyltransferase [Methanococcoides burtonii DSM 6242]
 gi|91713370|gb|ABE53297.1| SAM-dependent methyltransferase [Methanococcoides burtonii DSM
           6242]
          Length = 357

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 7/124 (5%)

Query: 39  IAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-N 95
           I     +  L   T+ +I  G G  T        +KV  IE D +     +    ++  +
Sbjct: 35  IVAKYRAKRLKCRTIADISCGIGGQTIFFAKEC-KKVYAIEIDLKKIEYAEINCERYGLD 93

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            +E I  DAL    E+  N    + ++ + P    +       S     P          
Sbjct: 94  NVEFICGDAL---SEEVINQIPKLDVLFSDPARPPSEDERRLSSLQPGIPQVLEAYSKIT 150

Query: 156 KEVG 159
               
Sbjct: 151 NNFA 154


>gi|16761698|ref|NP_457315.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143182|ref|NP_806524.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56414874|ref|YP_151949.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168235965|ref|ZP_02661023.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194737427|ref|YP_002115875.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197363802|ref|YP_002143439.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|213052389|ref|ZP_03345267.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425675|ref|ZP_03358425.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580997|ref|ZP_03362823.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213648319|ref|ZP_03378372.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213859419|ref|ZP_03385123.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289829790|ref|ZP_06547305.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|20139000|sp|Q8Z474|PIMT_SALTI RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|81599366|sp|Q5PEE9|PIMT_SALPA RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|238689956|sp|B5BEY0|PIMT_SALPK RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|238693686|sp|B4TTV7|PIMT_SALSV RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|25329724|pir||AI0855 L-isoaspartyl protein carboxyl methyltransferase type II [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503999|emb|CAD06032.1| L-isoaspartyl protein carboxyl methyltransferase type II
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138815|gb|AAO70384.1| L-isoaspartyl protein carboxyl methyltransferase type II
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56129131|gb|AAV78637.1| L-isoaspartyl protein carboxyl methyltransferase type II
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|194712929|gb|ACF92150.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197095279|emb|CAR60832.1| L-isoaspartyl protein carboxyl methyltransferase type II
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197290751|gb|EDY30105.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 208

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQL 162


>gi|84502964|ref|ZP_01001066.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Oceanicola
           batsensis HTCC2597]
 gi|84388709|gb|EAQ01580.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Oceanicola
           batsensis HTCC2597]
          Length = 402

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           K + +  G   G  V+EIG G G   +        +V  +  
Sbjct: 175 KSMVDQMGVQPGDHVLEIGCGWGGFAEYAAKERGLRVTGLTI 216


>gi|329937511|ref|ZP_08287069.1| hypothetical protein SGM_2561 [Streptomyces griseoaurantiacus M045]
 gi|329303387|gb|EGG47274.1| hypothetical protein SGM_2561 [Streptomyces griseoaurantiacus M045]
          Length = 281

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 18/91 (19%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLD-------LNILKKIAESSGSLDGITVIEIGAGP 58
           + H L+     +    ++Y       D         ++ ++ E S    G  V+++G G 
Sbjct: 21  RPHGLRRTAESFGTDARRY-------DRARPAYPEALVGRVVEGS---PGPEVLDVGCGT 70

Query: 59  GNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           G   +  L  G   V+ +E D +   + ++ 
Sbjct: 71  GIAGRQFLAAGC-AVLGVEPDPRMADVARER 100


>gi|323135608|ref|ZP_08070691.1| methionine biosynthesis protein MetW [Methylocystis sp. ATCC 49242]
 gi|322398699|gb|EFY01218.1| methionine biosynthesis protein MetW [Methylocystis sp. ATCC 49242]
          Length = 210

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QN  LDL ++  +        G  V+++G G G L Q+L          +E  Q+    +
Sbjct: 6   QNPRLDLRVIADMVA-----PGSRVLDVGCGDGALLQLLEDAKGVDGRGVELSQR---GV 57

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
            +  ++    L +IQ DA   D   + +      I++
Sbjct: 58  NECVAKG---LSVIQGDA-DTDLADYPDDGFDYVILS 90


>gi|242091926|ref|XP_002436453.1| hypothetical protein SORBIDRAFT_10g002950 [Sorghum bicolor]
 gi|241914676|gb|EER87820.1| hypothetical protein SORBIDRAFT_10g002950 [Sorghum bicolor]
          Length = 379

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLE 98
            ++    G  V+++G G G L       GARKV  +E         ++++  +   + +E
Sbjct: 61  RNAPHFQGKVVLDVGTGSGILAIWSAQAGARKVYAVEA-TNMAEHARELARANGVADIVE 119

Query: 99  IIQD 102
           +IQ 
Sbjct: 120 VIQG 123


>gi|254467847|ref|ZP_05081253.1| 23S rRNA (uracil-5-)-methyltransferase [beta proteobacterium KB13]
 gi|207086657|gb|EDZ63940.1| 23S rRNA (uracil-5-)-methyltransferase [beta proteobacterium KB13]
          Length = 437

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 3/142 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++ K  E         V++  +G GN T  +    A  VI IE  +    + +  +
Sbjct: 271 INQLMIDKALELLNLNPQDEVVDFFSGLGNFTLPIAKY-AHSVIGIEGSEDLVNLGQKNA 329

Query: 91  S-QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
              + N +     +  +VD +   ++ +  + + + P +   +LL   IS DT  P    
Sbjct: 330 GLNNLNNVSFQYSNLFEVDVDFVNSLKNKNKWLLDPPRDGAMQLL-ELISKDTMLPETIV 388

Query: 150 LTLLFQKEVGERITAQKNSPHY 171
                   +        N   Y
Sbjct: 389 YVSCNPATLARDANILVNDKGY 410


>gi|319426719|gb|ADV54793.1| Methyltransferase type 11 [Shewanella putrefaciens 200]
          Length = 205

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 9/137 (6%)

Query: 52  IEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKV 107
           +EIG G GN   ++    GA  V  ++ D +     +          N L     DA ++
Sbjct: 43  LEIGCGFGNGIHLIREHFGAGHVTAVDIDPEMVAAAQKRWQDSSHGLNHLLFSVADATQL 102

Query: 108 DF-EKFFNISSPIRIIANLP-YNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
            F E  F+I     +  ++P +      +   +    +    +         +  R+   
Sbjct: 103 PFAEDRFDIVFNFAVFHHIPAWQTAIAEVARVLKLGGFFVIEDLYRSAICNPISRRLFEH 162

Query: 166 KNSPHYGR---LSVLTG 179
                +     L+VL  
Sbjct: 163 PQQNRFDHRELLAVLHQ 179


>gi|118431482|ref|NP_147984.2| hypothetical protein APE_1503.1 [Aeropyrum pernix K1]
 gi|116062807|dbj|BAA80502.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 164

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 25  MGQNFLL-----DLNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK 78
           +G N L+        ++ KI E     +     ++G G G  + + +     +K + +E 
Sbjct: 3   LGSNPLVPYVPTRPELIPKILELLDLKEDDVFYDLGCGDGRVVIEAVKKTRVKKAVCVET 62

Query: 79  DQQFFPILKDISSQH--PNRLEIIQDDALKVD 108
                   +  + +    +R+E I +D  K  
Sbjct: 63  RDDLVKEARKKAEEEGVSDRIEFINNDFFKTP 94


>gi|88602601|ref|YP_502779.1| putative methyltransferase [Methanospirillum hungatei JF-1]
 gi|88188063|gb|ABD41060.1| putative methyltransferase [Methanospirillum hungatei JF-1]
          Length = 291

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRL 97
           I       +G  V++IG GPG +   L   GA  V V+E       +L D I+ Q  + +
Sbjct: 58  ILSRIPIREGEAVLDIGGGPGTIALPLAQKGAH-VTVVEPAVGIVSVLSDNIADQGFSNI 116

Query: 98  EIIQ---DDAL 105
           +II    +D L
Sbjct: 117 KIIHSRWEDVL 127


>gi|148259453|ref|YP_001233580.1| methionine biosynthesis protein MetW [Acidiphilium cryptum JF-5]
 gi|326402679|ref|YP_004282760.1| methionine biosynthesis protein MetW [Acidiphilium multivorum
           AIU301]
 gi|146401134|gb|ABQ29661.1| methionine biosynthesis protein MetW [Acidiphilium cryptum JF-5]
 gi|325049540|dbj|BAJ79878.1| methionine biosynthesis protein MetW [Acidiphilium multivorum
           AIU301]
          Length = 217

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           P +++G+N  +DL ++ ++        G  V++IG G G L  +L          IE D 
Sbjct: 6   PVRFVGKNMRVDLELIAEMI-----PPGSRVLDIGCGDGALIDLLARTRRCDARGIEID- 59

Query: 81  QFFPILKDISSQHPNRLEIIQDDA 104
               + + ++   P    ++Q DA
Sbjct: 60  -MAEVTRAVAHGLP----VMQGDA 78


>gi|312134179|ref|YP_004001517.1| O-methyltransferase-like protein [Caldicellulosiruptor owensensis
           OL]
 gi|311774230|gb|ADQ03717.1| O-methyltransferase-like protein [Caldicellulosiruptor owensensis
           OL]
          Length = 240

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL----TLGARKVIVIEKDQQFF--PILKDISSQHP 94
           +         V+E   G GNL   +L        +K+  +E  ++     IL    +   
Sbjct: 32  DFIQLKKNDIVVEF--GTGNLIIPILLWAKGKKFKKLYALEIQKEVCELAILNRNINNLQ 89

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +R+E+I  D LK D  K F       +  N PY
Sbjct: 90  DRIEVINAD-LK-DALKIFGSEFANVVFTNPPY 120


>gi|297570167|ref|YP_003691511.1| Methyltransferase type 12 [Desulfurivibrio alkaliphilus AHT2]
 gi|296926082|gb|ADH86892.1| Methyltransferase type 12 [Desulfurivibrio alkaliphilus AHT2]
          Length = 488

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEI 99
                 +  +V+E+G G GN T+ LL    R  +  ++  ++     ++     P RLE+
Sbjct: 265 RLPPDQEVKSVLELGCGTGNWTRRLLDGLPRAHITALDFSEEMLRQAREKCPPSP-RLEL 323

Query: 100 IQ---DDALKVDFE--KFFNISSPIRIIANLPYNIG 130
           +    +D L  + +       ++ ++  A+LP ++ 
Sbjct: 324 LCREGEDFLAANRQLFDLITANATLQWFADLPRSLA 359


>gi|167754863|ref|ZP_02426990.1| hypothetical protein CLORAM_00367 [Clostridium ramosum DSM 1402]
 gi|237735405|ref|ZP_04565886.1| modification methylase [Mollicutes bacterium D7]
 gi|167704913|gb|EDS19492.1| hypothetical protein CLORAM_00367 [Clostridium ramosum DSM 1402]
 gi|229381150|gb|EEO31241.1| modification methylase [Coprobacillus sp. D7]
          Length = 285

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            NIL +I +       IT+ ++G G G + T + L     KV   +   +   + KD + 
Sbjct: 101 ENILYRIDDYFAEYQSITLCDVGTGSGAIATSLALEEPRLKVFATDISLKAVTVAKDNAK 160

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                +E +  D L+       N       ++N PY
Sbjct: 161 NLGANIEFMVGDMLE---PLLENEIKVDIFVSNPPY 193


>gi|126178605|ref|YP_001046570.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1]
 gi|125861399|gb|ABN56588.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1]
          Length = 663

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 32  DLNI----LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPI 85
           D  I    + +IA          V+++  G G  T  L   G         DQ       
Sbjct: 58  DPRITGREIDRIARVLHLQPHEKVLDLCCGQGRHTLELARRGYN---AEGLDQSHYLIQR 114

Query: 86  LKDISSQHPNRLEIIQDDALKVDFE 110
            +  + +    +   + DA ++ + 
Sbjct: 115 ARSTAKKEGLPVRFREGDARRLPYR 139


>gi|126437805|ref|YP_001073496.1| methyltransferase type 11 [Mycobacterium sp. JLS]
 gi|126237605|gb|ABO01006.1| Methyltransferase type 11 [Mycobacterium sp. JLS]
          Length = 255

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
              +    ++E+GAG G L++ LL      +V V + D+     +         R  +  
Sbjct: 74  IADVPDPKILELGAGHGGLSRRLLEAHPTAEVTVTDLDETSVAKIAASDLGSHPRARVQV 133

Query: 102 DDALKVDFEK 111
            DA  +D   
Sbjct: 134 MDATAIDAPD 143


>gi|329960878|ref|ZP_08299157.1| ribosomal protein L11 methyltransferase [Bacteroides fluxus YIT
           12057]
 gi|328532164|gb|EGF58968.1| ribosomal protein L11 methyltransferase [Bacteroides fluxus YIT
           12057]
          Length = 280

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDISSQHPNRLEIIQD 102
           G+L G +++++G G   L  +    GA     I+ D+      L++I   H + + + Q 
Sbjct: 141 GNLQGKSLLDMGCGTSILAILARMRGAAPCTAIDIDEWCVRNSLENIELNHVDDITVFQG 200

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           DA         +      IIAN+  NI    + +++S 
Sbjct: 201 DA-----SSLADKGPFDVIIANINRNILLNDMKHYVSR 233


>gi|294146485|ref|YP_003559151.1| putative methyltransferase [Sphingobium japonicum UT26S]
 gi|292676902|dbj|BAI98419.1| putative methyltransferase [Sphingobium japonicum UT26S]
          Length = 214

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 13/137 (9%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI 85
           +FL+D      +           VIE G G G  T+ LL    G  +++ I+    F   
Sbjct: 53  HFLVDA-----MLGPVDWSRMERVIEYGPGTGIFTRALLDRLPGHARLLAIDTSPAFIGH 107

Query: 86  LKDISSQHPNRLEIIQDDA---LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
           L+        RL  +   A   L++   + ++ +  I +       +        + A  
Sbjct: 108 LR--GEMRDRRLVAVTGSADGVLEIMAAQGWDRADCI-LSGLPFSTLAPERAERLMEASA 164

Query: 143 WPPFWESLTLLFQKEVG 159
                E   L +Q    
Sbjct: 165 CALRPEGKFLAYQMRRA 181


>gi|284038346|ref|YP_003388276.1| methyltransferase type 11 [Spirosoma linguale DSM 74]
 gi|283817639|gb|ADB39477.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
          Length = 243

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
              + ++        V +IGAG G  T ++     +  V+ ++   +    L +
Sbjct: 78  TDLLLKALSLKPTDVVADIGAGTGFFTFLMAPKVPKGNVLAVDIQPEMIEYLNE 131


>gi|256379963|ref|YP_003103623.1| methyltransferase [Actinosynnema mirum DSM 43827]
 gi|255924266|gb|ACU39777.1| methyltransferase [Actinosynnema mirum DSM 43827]
          Length = 188

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            LDG  V+++ AG G L    L+ GA    ++E D++   +L+  ++     L +     
Sbjct: 41  DLDGAHVLDLYAGSGALGFEALSRGAATATLVESDRRAADVLRANAAS----LRLPGATV 96

Query: 105 LKVDFE---KFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           L    E             ++A+ PY +    L   ++
Sbjct: 97  LHRPAEVVVAAPPERPCDLVLADPPYAVTDEQLNRVLA 134


>gi|154331157|ref|XP_001562018.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059340|emb|CAM37042.1| putative arginine N-methyltransferase, type III [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 426

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 79/228 (34%), Gaps = 36/228 (15%)

Query: 34  NILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           N+LKK       + G + V+EIGAG G L+ M   L A+ V+ +E   +   + +   ++
Sbjct: 116 NLLKK-----HIVPGESGVLEIGAGSGLLSMMAAKLEAKWVVAVEGSSEMAALARSNIAE 170

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG---------TRLLFNWIS--AD 141
           +    +I   + L  +         P  +++ +   +          T      +     
Sbjct: 171 NGLEGKIKVLNLLSTELTPSDLPEPPSILVSEIFGTLLLGESALDYITDARHRLLRPTTK 230

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
             P +     +  + E   +I A  +      LS +   +   +++F       F     
Sbjct: 231 ILPQYGVQYAVPIECETLSQICAVSSWNGID-LSHVMALQDTTSVVFT--KQYGFRM--- 284

Query: 202 TSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENL 249
               + F    +PIP        +    F + R   R S K++    +
Sbjct: 285 --CSVPFCRLADPIP--------LLTIDFAETR---RNSFKKVFPVEV 319


>gi|254254886|ref|ZP_04948203.1| Trans-aconitate methyltransferase [Burkholderia dolosa AUO158]
 gi|124899531|gb|EAY71374.1| Trans-aconitate methyltransferase [Burkholderia dolosa AUO158]
          Length = 268

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 15/90 (16%)

Query: 32  DLNI--LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           D     ++ +  +  +    T I+IG GPGN T+ LL       V  I+         + 
Sbjct: 24  DERTRPVRDLLAAVPNTPIRTAIDIGCGPGNSTEALLARAPDATVRGIDASPDMIAAARK 83

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSP 118
                          AL+ D         P
Sbjct: 84  RLP------------ALRFDIADISTWDDP 101


>gi|157368327|ref|YP_001476316.1| type 11 methyltransferase [Serratia proteamaculans 568]
 gi|157320091|gb|ABV39188.1| Methyltransferase type 11 [Serratia proteamaculans 568]
          Length = 259

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            I   + ++ G   G+TVI++GAG G  T  LL  GA +VI +E       +L+ +S+ 
Sbjct: 32 PEITTWLRDTIGLHAGMTVIDLGAGTGKFTPRLLETGA-QVIAVEP---VAQMLEKLSAA 87

Query: 93 HP 94
           P
Sbjct: 88 LP 89


>gi|115379583|ref|ZP_01466671.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821580|ref|YP_003953938.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363410|gb|EAU62557.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394652|gb|ADO72111.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
          Length = 428

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RL 97
             +    D  +V+E+ +G GN T  L    A  V+ +E        L   S++      +
Sbjct: 276 VYALAPRDTDSVLELYSGNGNFTFPLAATAA-SVLGVESSPVGVE-LAQRSAREGGVTNV 333

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
             IQ DA KV         +    +A+ P  
Sbjct: 334 RFIQGDARKVVQGLIGEGRTFDLCLADPPRT 364


>gi|83816149|ref|YP_445152.1| RNA methylase family protein [Salinibacter ruber DSM 13855]
 gi|83757543|gb|ABC45656.1| Putative RNA methylase family UPF0020 [Salinibacter ruber DSM
           13855]
          Length = 156

 Score = 37.1 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93
           ++ ++ E +   +   + ++G+G G +          + + IE D       +  + +  
Sbjct: 10  VVDRMLELADVDETDVLYDLGSGDGRIVIRAARTHGARGVGIEIDPDLVKKARKNAKEAG 69

Query: 94  -PNRLEIIQDDALKVDFEK 111
             + +E  Q D  + D  +
Sbjct: 70  VADLVEFRQGDLFEADISE 88


>gi|296167428|ref|ZP_06849828.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897218|gb|EFG76824.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 256

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDD 103
                V+EIG G G  T  +        VI +E  ++    +L  I  +    + +I+ +
Sbjct: 79  RHAPLVLEIGCGSGTSTLAMAKDEPDIDVIAVEIYKRGLAQLLCAIDRERVGNIRLIRGN 138

Query: 104 ALKV 107
           AL V
Sbjct: 139 ALDV 142


>gi|293567648|ref|ZP_06678991.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1071]
 gi|291589583|gb|EFF21388.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1071]
          Length = 279

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 51  VIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           VI+IG G G +   L        V  ++  ++   + K+ + +   ++     D L    
Sbjct: 116 VIDIGTGTGAIAISLKAARKNWHVSAVDLSEEALEVAKENAQKEGTKISFYHGDTLGPVM 175

Query: 110 EKFFNISSPIRIIANLPY 127
           ++ F++     II+N PY
Sbjct: 176 DQQFDV-----IISNPPY 188


>gi|219558420|ref|ZP_03537496.1| hypothetical protein MtubT1_14392 [Mycobacterium tuberculosis T17]
 gi|289570573|ref|ZP_06450800.1| hypothetical protein TBJG_00940 [Mycobacterium tuberculosis T17]
 gi|289544327|gb|EFD47975.1| hypothetical protein TBJG_00940 [Mycobacterium tuberculosis T17]
          Length = 354

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E++       V+EIGAG G     L   G   V V+E   +F  I++  + +    + +I
Sbjct: 141 EAADPT-THRVLEIGAGTGRNALALARRG-HPVDVVEMTPKFADIIRSDAERDSLDVRVI 198

Query: 101 QDDA 104
             D 
Sbjct: 199 MRDV 202


>gi|219851759|ref|YP_002466191.1| Methyltransferase type 11 [Methanosphaerula palustris E1-9c]
 gi|219546018|gb|ACL16468.1| Methyltransferase type 11 [Methanosphaerula palustris E1-9c]
          Length = 270

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQ--NFLLDLNILKKIAESSGSLDGITVIEIGAGP 58
           M  +   H    +   Y  +     GQ  N L        +  + G   G TV++IG G 
Sbjct: 1   MIKSIAHHDTIELAERYDQV---SEGQYNNGLT-------LIANLGVKKGQTVLDIGCGT 50

Query: 59  GNLTQMLLTLGARKVIVIEKDQ--QFFPILKDISSQHP-NRLEIIQDDA 104
           G LT  +  +      VI  D   +   I +      P + + +   DA
Sbjct: 51  GRLTSRVAKIVGDTGQVIGIDPSKERIEIARRNVPDSPRSNISLEIGDA 99


>gi|254390776|ref|ZP_05005988.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
 gi|294815217|ref|ZP_06773860.1| Putative O-methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326443572|ref|ZP_08218306.1| putative O-methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197704475|gb|EDY50287.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
 gi|294327816|gb|EFG09459.1| Putative O-methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 407

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDIS 90
             I   + E +    G+ V+EIG+G  N    L  L   A  V+ ++ D       + + 
Sbjct: 78  PQIQAMMLEQAQVRPGMRVLEIGSGGLN-AAYLAELVGEAGDVVTVDIDPTVTDRARRLL 136

Query: 91  SQH-PNRLEIIQDDA 104
            ++  +R++++  DA
Sbjct: 137 DEYGYDRVQVVCVDA 151


>gi|197305105|pdb|3DLC|A Chain A, Crystal Structure Of A Putative
           S-Adenosyl-L-Methionine-Dependent Methyltransferase
           (Mmp1179) From Methanococcus Maripaludis At 1.15 A
           Resolution
          Length = 219

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDIS-SQ 92
           I + I    G   G T I+IG+GPG L+  L       +  ++  +    I LK+I+ + 
Sbjct: 32  IAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADAN 90

Query: 93  HPNRLEIIQDDA 104
             +R++I+Q D 
Sbjct: 91  LNDRIQIVQGDV 102


>gi|161529230|ref|YP_001583056.1| methyltransferase type 11 [Nitrosopumilus maritimus SCM1]
 gi|160340531|gb|ABX13618.1| Methyltransferase type 11 [Nitrosopumilus maritimus SCM1]
          Length = 280

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 17/166 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQH 93
            KK+ E      G  ++++ +G G +T++L     +   V+  D       + K  + + 
Sbjct: 38  TKKLVELIDVKKGDHILDVASGTGVVTKLLNQKVGKSGFVVGADTATTAIKVAKKWNKKS 97

Query: 94  PNRLEIIQDDALKVDFEKFFNI----------SSPIRIIANLPYNI--GTRLLFNWISAD 141
           PN L  +  DA    F++ F+I           +  + + N+  ++    +L  +     
Sbjct: 98  PNLL-FVNADAENFSFKEKFDIITCQYALFFFPNAQKALKNMKNSLKESGKLGLSVHGHP 156

Query: 142 TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM 187
              P+++S+     + +   +     +P + R       R +    
Sbjct: 157 DRVPYFDSIFEAVTQFIPNYV--PPGTPDFDRFGTKKALRDEIKKA 200


>gi|146280552|ref|YP_001170705.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas stutzeri
           A1501]
 gi|145568757|gb|ABP77863.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas stutzeri
           A1501]
          Length = 393

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L+ I        G  ++++G G G L +        +V  I   ++   + ++  +    
Sbjct: 147 LRLICRKLRLKPGDRLLDVGCGWGGLARFAAREFGAEVFGITLSREQLALARERVAAEGL 206

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
            +R+++   D   +  +  F+
Sbjct: 207 QDRVQLELMDYRDLPQDGRFD 227


>gi|118589087|ref|ZP_01546494.1| SAM (and some other nucleotide) binding
           motif:Protein-L-isoaspartate(D-aspartate) [Stappia
           aggregata IAM 12614]
 gi|118438416|gb|EAV45050.1| SAM (and some other nucleotide) binding
           motif:Protein-L-isoaspartate(D-aspartate) [Stappia
           aggregata IAM 12614]
          Length = 238

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L+  +I  K+ + +   +G  V+ +GAG G    ++  L A  V+ +E++        ++
Sbjct: 82  LMKPHIFGKLVQLADIREGDVVLVVGAGTGYSAAVVSKLAA-SVVALEENPDLAKTATEV 140

Query: 90  SSQHPNRLEIIQDDAL 105
                    ++ + AL
Sbjct: 141 LVDLGIENAVVVEGAL 156


>gi|56695669|ref|YP_166020.1| FkbM family methyltransferase [Ruegeria pomeroyi DSS-3]
 gi|56677406|gb|AAV94072.1| methyltransferase, FkbM family [Ruegeria pomeroyi DSS-3]
          Length = 230

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 39 IAESSGSL-DGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISS 91
          IA +         V+EIGAG G +  ++      + V   E + +  P ++ + +
Sbjct: 40 IAGALHVTGPKDVVLEIGAGLGIVGAVVAKNAKPKSVTSFEANPELVPEIEALYA 94


>gi|332753467|gb|EGJ83847.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri
           4343-70]
          Length = 194

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 47  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 101

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +   +P    I+   P  I T L+   
Sbjct: 102 RLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQL 148


>gi|331696246|ref|YP_004332485.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950935|gb|AEA24632.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Pseudonocardia dioxanivorans CB1190]
          Length = 280

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             S G      V+E+G G G     +L   A +V+ +E+D +     +D+ ++    +E+
Sbjct: 145 IASLGLPQHARVLEVGTGSGY-GAAVLARCAAEVVTVERDPELAAAARDLLARLAPDVEV 203

Query: 100 IQDDALK--VDFEKFFNISSPIRIIANLP 126
              D +   VD   +  I         LP
Sbjct: 204 RTGDGVHAGVDRAPYDGILVTAMASGRLP 232


>gi|312622232|ref|YP_004023845.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202699|gb|ADQ46026.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 306

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 35/68 (51%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G+ V+++G G G L        AR+V+ ++ D+    + ++ +  +   +EI ++D 
Sbjct: 166 VKPGMDVLDVGTGSGILAIAAKKFLARRVLAVDIDEVAVKVAEENARLNGVEIEIKKNDL 225

Query: 105 LKVDFEKF 112
           ++   EKF
Sbjct: 226 VEGIEEKF 233


>gi|302525045|ref|ZP_07277387.1| RsmD family RNA methyltransferase [Streptomyces sp. AA4]
 gi|302433940|gb|EFL05756.1| RsmD family RNA methyltransferase [Streptomyces sp. AA4]
          Length = 188

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          E +G LDG  V+++ AG G L    L+ GA     +E D++   +L+
Sbjct: 37 EVAGELDGARVLDLYAGSGALGLEALSRGAADAWFVEADRRAADVLR 83


>gi|288800235|ref|ZP_06405693.1| SAM-dependent methyltransferase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332448|gb|EFC70928.1| SAM-dependent methyltransferase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 258

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +  K+ ++        VIE   G G   ++ L+      + +E + +    +++      
Sbjct: 30  LTHKMLKAMNITSDDDVIEFAPGLGYTAKLALSHQPHSYVAVELNSEAAKRVENNVQN-- 87

Query: 95  NRLEIIQDDA 104
           ++++I+  +A
Sbjct: 88  DKMQIVIGNA 97


>gi|261335195|emb|CBH18189.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 421

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKD 88
           I  +     G  V E G G G+LT  L    A   IV   D   ++    L++
Sbjct: 160 IVFNLRLRPGHRVAEAGTGSGSLTHSLARTVAPDGIVYTYDFHKKRCLEALQE 212


>gi|288931180|ref|YP_003435240.1| methyltransferase type 11 [Ferroglobus placidus DSM 10642]
 gi|288893428|gb|ADC64965.1| Methyltransferase type 11 [Ferroglobus placidus DSM 10642]
          Length = 203

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA-- 104
           +G  V+E+G G G   + +      +V+ ++  ++          ++   + +IQ DA  
Sbjct: 42  EGNLVLEVGIGTG---KNIPYYKNWEVVGVDISRRMLERAVKRVKENKKVVHLIQADAES 98

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           L      F  I S     +      G R L   +       F E +
Sbjct: 99  LPFKDGVFDAIISTYVFCSVENPINGLRELHRVLKKGGKAYFLEHM 144


>gi|218198418|gb|EEC80845.1| hypothetical protein OsI_23454 [Oryza sativa Indica Group]
          Length = 360

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 9/124 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD----QQFFPILKDISSQHPNRLE 98
           +   DG T++++G G G+L+  +    ++  I    +    + F    +       + +E
Sbjct: 130 AQLQDGQTILDVGCGWGSLSLYIAKKYSKCSITGICNSTTQKTFIE--EQCRENELSNVE 187

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           II  D  K + E+ F+    I  I    +    + L   +S          +     K  
Sbjct: 188 IIVADISKFEMERSFD---RIISIEMFEHMKNYKALLKKLSRWMKEDSLLFVHYFCHKTF 244

Query: 159 GERI 162
               
Sbjct: 245 AYHF 248


>gi|163955690|gb|ABY49843.1| 24-sterol C-methyltransferase [Gossypium hirsutum]
          Length = 361

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-D-QQFFPILKDISSQHPNRL 97
            +      G  ++++G G G   + +      KV+ I   D Q     + +  +   +  
Sbjct: 116 VDLIDVKPGDRILDVGCGVGGPMRAIAAHSQAKVVGITINDYQVNRARMHNKKAGLDSLC 175

Query: 98  EIIQDDALKVDFEK-FFNISSPIRIIANLP 126
           E++  + L++ F+   F+ +  I    + P
Sbjct: 176 EVVCGNFLEMPFQDNSFDGAYSIEATCHAP 205


>gi|168035211|ref|XP_001770104.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678630|gb|EDQ65086.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 575

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
             I  +   L    V+++G G G L+      GA KVI I+   +   +   I+  +
Sbjct: 232 DAIVANPTLLKNAVVMDVGCGTGILSLFAAQAGASKVIAIDGSSKMASVATQIAKAN 288


>gi|163782994|ref|ZP_02177989.1| aminotransferase (AspC family) protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881674|gb|EDP75183.1| aminotransferase (AspC family) protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 372

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 67/199 (33%), Gaps = 20/199 (10%)

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI 119
            L             +++ + +F PI ++   +       I+ D L+    K  +ISSP 
Sbjct: 111 ALGDPSYPCYKNFAHLLDVEPEFVPISRETDYE-------IKADMLRGRKVKAVHISSPA 163

Query: 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
               NL      + L ++   +      + +      E  E  TA + S     ++  + 
Sbjct: 164 NPTGNLYSPNTLKELADYCDREGIYLISDEIYHGLVYEGKEH-TALEFSDRAIVINGFSK 222

Query: 180 WRTKATMMFDISPHVFFPSPKVTSTVIHF--IPHLNPIPCCLESLKKI-------TQEAF 230
           +       F I      P   + S  I    +    P      +L+          ++ F
Sbjct: 223 FFCMP--GFRIG-WAILPPELIRSAEIVIQNVFISAPTLSQYAALEAFDWEYLKKVRDIF 279

Query: 231 GKRRKTLRQSLKRLGGENL 249
            +RRKTL + ++ L   + 
Sbjct: 280 SERRKTLYEGVRELFEVDA 298


>gi|323701207|ref|ZP_08112882.1| Eco57I restriction endonuclease [Desulfotomaculum nigrificans DSM
           574]
 gi|323533809|gb|EGB23673.1| Eco57I restriction endonuclease [Desulfotomaculum nigrificans DSM
           574]
          Length = 493

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 20/126 (15%)

Query: 22  KKYMGQNFLLDLNILKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARK-------V 73
           +K  GQ FL    +   +AE        I++++ GAG G LT  L+    ++       V
Sbjct: 24  RKMKGQ-FLTPYKVGSFMAELFEIHNKSISILDPGAGTGLLTLALIEKIIKESFVKHISV 82

Query: 74  IVIEKDQQFFPILKD---ISSQHPNRLEII------QDDALKVDFEKFFNISSPI--RII 122
            + E D+   P+L++   +  +  ++ E+        ++ +  + + +     P    II
Sbjct: 83  DLFENDESLLPVLEENLRLIQEFCSQKEVHLIYKIYNENFISYNQDCWTEECEPKYDIII 142

Query: 123 ANLPYN 128
            N PY 
Sbjct: 143 GNPPYQ 148


>gi|316931607|ref|YP_004106589.1| protein-L-isoaspartate O-methyltransferase [Rhodopseudomonas
           palustris DX-1]
 gi|315599321|gb|ADU41856.1| protein-L-isoaspartate O-methyltransferase [Rhodopseudomonas
           palustris DX-1]
          Length = 241

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E+     G  V+EIG G G    +L  + A  V  +E+       L D ++ 
Sbjct: 77  PYIVALMMEALLLQGGDNVLEIGTGSGYAAAVLGEI-AGHVATVER----IATLADTAAA 131

Query: 93  HPNRL-----EIIQDDALKVDFEK 111
               L      + Q D  +     
Sbjct: 132 KLAELGYVDVHVHQGDGTRGWPPD 155


>gi|255525325|ref|ZP_05392265.1| ribosomal protein L11 methyltransferase [Clostridium
           carboxidivorans P7]
 gi|296188193|ref|ZP_06856585.1| ribosomal protein L11 methyltransferase [Clostridium
           carboxidivorans P7]
 gi|255510997|gb|EET87297.1| ribosomal protein L11 methyltransferase [Clostridium
           carboxidivorans P7]
 gi|296047319|gb|EFG86761.1| ribosomal protein L11 methyltransferase [Clostridium
           carboxidivorans P7]
          Length = 311

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
                 + +IG G G L      L A++VI ++ D        +    +  + ++I+  +
Sbjct: 174 VKPESKIFDIGTGSGILAITAAKLKAKEVIGVDLDPVAVKSASENVKYNDVDNIKILHGN 233

Query: 104 ALKV 107
            ++V
Sbjct: 234 LMEV 237


>gi|222152423|ref|YP_002561598.1| ribosomal protein L11 methyltransferase [Streptococcus uberis
           0140J]
 gi|254783317|sp|B9DTA9|PRMA_STRU0 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|222113234|emb|CAR40734.1| ribosomal protein L11 methyltransferase [Streptococcus uberis
           0140J]
          Length = 317

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TVI++G G G L+     LGA+++   + D     + ++    + N   + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDDVAVRVAQENIDLNANTENIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|163782688|ref|ZP_02177685.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882261|gb|EDP75768.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 289

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 57  GPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G  T+ +L    +  VI I++D++   I K+   +   R+ I + D   +D
Sbjct: 28  GLGGHTKRILEKNPQAFVIGIDRDEEAIEIAKENLKEFEGRIAIYKADFADLD 80


>gi|6946701|dbj|BAA90668.1| protoporphyrinogen oxidase [Porphyromonas gingivalis]
          Length = 293

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           IL+K   ++  L    ++++G G G L   L      KV  ++         +    +  
Sbjct: 107 ILRKERPAAVPL---CLLDVGTGSGCLAITLARELRAKVWAMDISSDALATARANVGE-D 162

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI---GTRLLFNWISADTWPPFW--ES 149
           +R+   + D L  D      +     I++N PY +      + ++ +  +     +  E 
Sbjct: 163 DRIFFFEGDILSPDNRWDV-LPPVDIIVSNPPYIMPAESADMAYHVLGHEPALALFAPED 221

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGW---------------RTKATMMFDISPHV 194
             LLF K +   ++        GRL V                     +  +  D+S   
Sbjct: 222 DPLLFYKAIA-NLSGSGKLRSGGRLYVELNPLLAEATCEVFSAKEGWCEVRLHADLSGKS 280

Query: 195 FFPSPK 200
            F S K
Sbjct: 281 RFLSAK 286


>gi|148260435|ref|YP_001234562.1| O-methyltransferase-like protein [Acidiphilium cryptum JF-5]
 gi|146402116|gb|ABQ30643.1| O-methyltransferase-like protein [Acidiphilium cryptum JF-5]
          Length = 239

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           A    +  G  VIE G G G  L  +   +   + + IE+D +   + +D    +     
Sbjct: 32  AAVVPARPGERVIEAGTGAGAGLLCLSYRVPELRGVGIERDPELAALARDNLRTNGFEGT 91

Query: 98  EIIQDDA----LKVDFEKFFNISSPIRIIANLP 126
            II  D     L   F+  F  + P R +A+ P
Sbjct: 92  TIIAADITGPPLTGPFDHAF-ANPPWRPVADTP 123


>gi|320162970|gb|EFW39869.1| arginine methyltransferase 4-PA [Capsaspora owczarzaki ATCC 30864]
          Length = 678

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           + + E++   +   V+++GAG G L+   +  GARKV  IE
Sbjct: 251 RAMLENAADFEDKVVLDVGAGTGVLSFFAIQAGARKVYAIE 291


>gi|302389712|ref|YP_003825533.1| spermidine synthase [Thermosediminibacter oceani DSM 16646]
 gi|302200340|gb|ADL07910.1| spermidine synthase [Thermosediminibacter oceani DSM 16646]
          Length = 275

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 6/114 (5%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-----SQHPNRLEIIQDD 103
             V+ IG G G   + +L    ++  ++E D++     K        +    R ++  +D
Sbjct: 77  ERVLVIGGGDGGTLREILKHPVKEAHLVEIDERVIEASKKFFPALSVAFEDPRAKVFCED 136

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            +    ++F N    I + +  P      L       D +    +    + Q E
Sbjct: 137 GIAY-VKRFKNYYDVIIVDSTDPVGPAVGLFAKEFYKDIYEALTDKGVFVAQTE 189


>gi|295395904|ref|ZP_06806089.1| tRNA (adenine-N(1)-)-methyltransferase [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971177|gb|EFG47067.1| tRNA (adenine-N(1)-)-methyltransferase [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 338

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILK 87
           I        G TV+E G G G LT  LL     +  V   E+ ++F  I +
Sbjct: 100 IVTLGDIFPGATVVEAGVGSGALTLALLRAVGDSGVVHSFERREEFAQIAQ 150


>gi|254501926|ref|ZP_05114077.1| Cyclopropane-fatty-acyl-phospholipid synthase family [Labrenzia
           alexandrii DFL-11]
 gi|222437997|gb|EEE44676.1| Cyclopropane-fatty-acyl-phospholipid synthase family [Labrenzia
           alexandrii DFL-11]
          Length = 390

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRL 97
                   G+ V+EIG G G+L   +   GA KV  +    +   I ++   +    +++
Sbjct: 151 VAKLDLKPGMEVLEIGGGWGSLAIQMAKAGA-KVTSLNVSPEQVKIAEERVREAGVEDKV 209

Query: 98  EIIQDD 103
             +  D
Sbjct: 210 TFVLKD 215


>gi|209573228|sp|A7HHV3|PIMT2_ANADF RecName: Full=Protein-L-isoaspartate O-methyltransferase 2;
           AltName: Full=L-isoaspartyl protein carboxyl
           methyltransferase 2; AltName: Full=Protein L-isoaspartyl
           methyltransferase 2; AltName:
           Full=Protein-beta-aspartate methyltransferase 2;
           Short=PIMT 2
          Length = 243

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  +A++     G  V+E+G+G G    +L  L A  V  IE + +      +  ++
Sbjct: 96  PYVVAFMAQALALRGGERVLEVGSGSGYAAAVLAHL-AGAVYGIELEPELHARSVETLAE 154

Query: 93  H-PNRLEIIQDD 103
                + + + D
Sbjct: 155 LGYGNVHLRRGD 166


>gi|158337401|ref|YP_001518576.1| UbiE/COQ5 family methlytransferase [Acaryochloris marina MBIC11017]
 gi|158307642|gb|ABW29259.1| methyltransferase, UbiE/COQ5 family, putative [Acaryochloris marina
           MBIC11017]
          Length = 209

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
           E      G  ++EIG G G+L   +L  G  + V+ ++  +    + +    +  H  +L
Sbjct: 41  EQLAIRQGDRILEIGFGGGSLLARILATGLPKTVVGLDYAEDALTVTQRKLWRYVHSGQL 100

Query: 98  EIIQDDALKVDFEK 111
            + Q +A  + F  
Sbjct: 101 TLQQGNASHLPFPD 114


>gi|57790382|gb|AAW56120.1| Cj81-041 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 230

 Score = 37.1 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 28  NFLLDLNILKKIAES-SGSLDGITV----IEIGAGPGN-LTQMLLTLGARKVIVIEKDQQ 81
           NF+ D +I   I       +    +    +EIG G GN   Q L      +++ ++    
Sbjct: 45  NFIWDTHIA--IRRYFIDLMQNNNIFGKYLEIGPGHGNFFLQSLKFGQFSELLGVDISPT 102

Query: 82  FFPILKDISSQHPN----RLEIIQDDALKVDFEKFFN 114
              + K I S + +    + + I  D L+ DF + F+
Sbjct: 103 SCEMTKKIVSFNDHKAKQKCQFICMDFLEYDFNEQFD 139


>gi|332969875|gb|EGK08878.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Kingella
           kingae ATCC 23330]
          Length = 217

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ +         V+EIG G G  T +L TL    V   + D       +   S+
Sbjct: 63  PKIVARMVQGLTLSKTDRVMEIGTGSGYATAVLATL-VDSVQTYDVD-------EQQLSR 114

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSP 118
               L+ +  D ++   E  F  S P
Sbjct: 115 AQAVLQSLNFDNIQFVAEDGFANSQP 140


>gi|325297717|ref|YP_004257634.1| tRNA (adenine-N(6)-)-methyltransferase [Bacteroides salanitronis
           DSM 18170]
 gi|324317270|gb|ADY35161.1| tRNA (adenine-N(6)-)-methyltransferase [Bacteroides salanitronis
           DSM 18170]
          Length = 252

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                 V++IG G G +  M+      +V  I+ D        +  ++S    R+   Q 
Sbjct: 52  LRQARNVLDIGTGSGLIALMIAQRCQAQVTGIDIDSDAIGQAGENALASPWSGRIRFCQA 111

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           DA        F       I++N PY
Sbjct: 112 DA------GAFQGGVYDTIVSNPPY 130


>gi|323669718|emb|CBJ94841.1| Putative methyltransferase [Salmonella bongori]
          Length = 294

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +S    G  V+++G GPG  T+ L   G R    ++         +  +      ++ I 
Sbjct: 60  ASQLPAGARVLDLGCGPGFYTRRLAERGFR-CTGVDFSPASIEWARQQAQAAELNIDYIH 118

Query: 102 DDALKVDFEKFFN 114
            D      E  F+
Sbjct: 119 QDIRTYWPEAPFD 131


>gi|321441973|gb|ADW85401.1| arg methyltransferase [Atteva punctella]
          Length = 244

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLDDVIEIVK 77

Query: 102 DDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLF---NWISADTWPPFWESLTLLF 154
                +++  EK   I S          ++   +LF    W++ D           + 
Sbjct: 78  GKVEEVELPVEKVDIIISEWMGYCLFYESMLDTVLFARDKWLAPDGMLFPDRCTLYIC 135


>gi|302340317|ref|YP_003805523.1| methyltransferase type 11 [Spirochaeta smaragdinae DSM 11293]
 gi|301637502|gb|ADK82929.1| Methyltransferase type 11 [Spirochaeta smaragdinae DSM 11293]
          Length = 283

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHP 94
           +K+I   +       V++IGAGPG L   L    A  +  +E       +L ++I+S+  
Sbjct: 54  IKEICNLA--KRDWHVLDIGAGPGTLAVPLSRSVAH-ITAVEPASGMAAVLEEEIASRGI 110

Query: 95  NRLEIIQD--DALKVDFEKFFNISSPIRII 122
             + II+   D    D +   ++  P  + 
Sbjct: 111 TNVTIIRKRWD----DIDAIADLRPPYDLC 136


>gi|302551498|ref|ZP_07303840.1| protein-L-isoaspartate O-methyltransferase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469116|gb|EFL32209.1| protein-L-isoaspartate O-methyltransferase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 327

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +     G TV+EIGAG G    +L    G  KV  ++ D +     +   +       +
Sbjct: 111 AALCVEAGNTVLEIGAGTGYNAALLAHRLGDDKVTTVDLDPEITESARRHLTAAGYHPVV 170

Query: 100 IQDD 103
           +  D
Sbjct: 171 VTGD 174


>gi|296135985|ref|YP_003643227.1| hypothetical protein Tint_1515 [Thiomonas intermedia K12]
 gi|295796107|gb|ADG30897.1| hypothetical protein Tint_1515 [Thiomonas intermedia K12]
          Length = 236

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-DQQF-FPILK 87
           LL+ + L+ I +  G   G +V++IG G G L++ +   GA KV  I+  D       L 
Sbjct: 35  LLNPHRLRWIQDHVGLG-GKSVVDIGCGGGILSESMAAAGA-KVTGIDLADASLQVARLH 92

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            + +Q      ++  + L  +    F++ + + ++ ++P
Sbjct: 93  ALDAQLDIDYRLVSAERLATEAAGQFDVVTCMEMLEHVP 131


>gi|213692549|ref|YP_002323135.1| Methyltransferase type 11 [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|291456599|ref|ZP_06595989.1| SAM-dependent methyltransferase [Bifidobacterium breve DSM 20213]
 gi|213524010|gb|ACJ52757.1| Methyltransferase type 11 [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|291381876|gb|EFE89394.1| SAM-dependent methyltransferase [Bifidobacterium breve DSM 20213]
 gi|320458699|dbj|BAJ69320.1| putative methyltransferase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 289

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + +++  ++       V+E   G G  T+ +L    +    +++D Q   I+  ++S+
Sbjct: 55  KKLTERMLANADIAGKD-VVEFAPGLGLTTRAILERDPKSYRGVDRDPQVVDIISKLTSE 113


>gi|163753818|ref|ZP_02160941.1| methyltransferase, FkbM family protein [Kordia algicida OT-1]
 gi|161326032|gb|EDP97358.1| methyltransferase, FkbM family protein [Kordia algicida OT-1]
          Length = 286

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             +   V++IG+  G LT       A++V  ++ D   F  L      +P        D 
Sbjct: 41  INEDSVVLDIGSWSGVLTLY-AAKTAKEVHALDPDPVCFSELNRNVQLNPAV-----ADK 94

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
           +K            +R+ A   Y   +  +  
Sbjct: 95  IKTYKTAISAQKETVRLSARETYGASSSSILE 126


>gi|163746388|ref|ZP_02153746.1| Cyclopropane-fatty-acyl-phospholipid synthase [Oceanibulbus
           indolifex HEL-45]
 gi|161380273|gb|EDQ04684.1| Cyclopropane-fatty-acyl-phospholipid synthase [Oceanibulbus
           indolifex HEL-45]
          Length = 403

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 15/42 (35%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           K + +  G   G  V+EIG G G   Q         V  +  
Sbjct: 176 KSMIDQMGVQPGDHVLEIGCGWGGFAQYAAAERGLHVTALTI 217


>gi|153802010|ref|ZP_01956596.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124122469|gb|EAY41212.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 240

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ--FFPILKDISSQHPNRLEIIQDDALK 106
           T+++IG G G L+ M         +  ++ +Q            S    R+E    D L 
Sbjct: 45  TILDIGCGTGLLSLMCAQRFPHAHITALDIEQTAYLAAEHNRQQSPWAERIECQHADILH 104

Query: 107 VDFEKFFNISSPIRIIANLPYNIG 130
               K F       II N PY   
Sbjct: 105 WLPSKRF-----AAIICNPPYFNS 123


>gi|120405036|ref|YP_954865.1| type 12 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119957854|gb|ABM14859.1| Methyltransferase type 12 [Mycobacterium vanbaalenii PYR-1]
          Length = 198

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
             +G   G  V++IG G G L Q LL + +R V +I+ D       +   + H +
Sbjct: 16 VGIAGEHRGD-VLDIGCGDGLLAQRLLPV-SRSVTLIDPDPDSVARAQARLAGHAD 69


>gi|254253028|ref|ZP_04946346.1| hypothetical protein BDAG_02277 [Burkholderia dolosa AUO158]
 gi|124895637|gb|EAY69517.1| hypothetical protein BDAG_02277 [Burkholderia dolosa AUO158]
          Length = 254

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
                ++EIG G G  T  +         + +E  +     +LK I  Q  + + IIQ D
Sbjct: 78  RSAPRILEIGFGMGASTAEIAANRPDDDFLGVEVHEPGVGALLKLIGEQDLSNIRIIQHD 137

Query: 104 ALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           A++V                   P     +    +    L   +++   P  +      +
Sbjct: 138 AVEVLEHMLAPESLDGVHIFFPDPWHKARHHKRRLIQPPLVALLASRLKPGAYLHCATDW 197

Query: 155 QKE 157
           Q  
Sbjct: 198 QNY 200


>gi|326428911|gb|EGD74481.1| hypothetical protein PTSG_05845 [Salpingoeca sp. ATCC 50818]
          Length = 455

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 28  NF--LLDL--NILKK------IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           +F  L D   N+  +      +AE   +    TV++IGAG G L+   L  GA  V   E
Sbjct: 129 HFRMLNDKQRNVAYRNALQAAVAERLATGSTCTVLDIGAGTGLLSLYALEAGATAVYACE 188

Query: 78  KDQQFFPILKDISSQHP 94
            +     + +    QH 
Sbjct: 189 MNAPMAEVARACIRQHQ 205


>gi|320102728|ref|YP_004178319.1| type 11 methyltransferase [Isosphaera pallida ATCC 43644]
 gi|319750010|gb|ADV61770.1| Methyltransferase type 11 [Isosphaera pallida ATCC 43644]
          Length = 239

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP 94
           ++I  +     G+++ +IGAG G  T++         +V  ++   +F   + +   +  
Sbjct: 69  REIVAACEPRPGMSIADIGAGTGLFTRLFAAEVGPTGRVYAVDIAPKFLEHIAESCRKEG 128

Query: 95  -NRLEIIQDD 103
            +++E +  D
Sbjct: 129 IDQVETVLGD 138


>gi|293610630|ref|ZP_06692930.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826974|gb|EFF85339.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 275

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 49/142 (34%), Gaps = 5/142 (3%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +  ++A++        ++++G G G  L   L     + +  ++   Q    ++ +  +
Sbjct: 50  QLADQLAQAVNLNSKDHLLDLGCGQGASLLHWLQHYQPKSLSAVDLQAQCVHKIQKLIPE 109

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
                +I     L +   +F +    +  I    ++     L + I+             
Sbjct: 110 IS---QIFCGSFLNLKQFEFKHCFDVVLCIDAAYHSNLNSFL-DSIAPVLNSKGRLGFHY 165

Query: 153 LFQKEVGERITAQKNSPHYGRL 174
           L + +  + +TA +   H   L
Sbjct: 166 LMRADSCQNMTALQEQKHRYLL 187


>gi|294084224|ref|YP_003550982.1| cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663797|gb|ADE38898.1| Cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 420

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           N L +IA         T+++IG G G L   L
Sbjct: 162 NKLARIAAKLNIQPHDTILDIGCGWGGLAHAL 193


>gi|302540724|ref|ZP_07293066.1| putative methylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458342|gb|EFL21435.1| putative methylase [Streptomyces himastatinicus ATCC 53653]
          Length = 218

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHPNRLEIIQDDA 104
            G  V++IG G G L  +    GA  V  ++   +      L    S  P R+ +   D 
Sbjct: 22  PGAQVLDIGTGTGALALLAARCGAAGVEAVDVSARAVLAAWLNTRRSGQPVRVRL--GDL 79

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTR 132
             V   + F++     ++AN PY     
Sbjct: 80  ASVASGRRFDV-----VLANPPYVPSRP 102


>gi|302345803|ref|YP_003814156.1| RNA methyltransferase, RsmD family [Prevotella melaninogenica ATCC
           25845]
 gi|302149703|gb|ADK95965.1| RNA methyltransferase, RsmD family [Prevotella melaninogenica ATCC
           25845]
          Length = 176

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI-IQDDALKVDFEKFFN 114
           AG G+++  LL+ G ++VI +EKD+     +     +      I I+ D  +        
Sbjct: 52  AGTGSISLELLSRGCQQVISVEKDRDHARFISQCMEKLGTNEHILIKGDVFRFLKSCHQK 111

Query: 115 ISSPIRIIANLPYNI 129
                 I A+ PY +
Sbjct: 112 FD---LIFADPPYAL 123


>gi|242074768|ref|XP_002447320.1| hypothetical protein SORBIDRAFT_06g032890 [Sorghum bicolor]
 gi|241938503|gb|EES11648.1| hypothetical protein SORBIDRAFT_06g032890 [Sorghum bicolor]
          Length = 388

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NR 96
           I      ++G  V+++G G G L+      GA++V  IE   +     ++I   +   ++
Sbjct: 73  IMRHQKFVEGKVVLDVGCGTGILSVFCARAGAKRVYAIEA-SEIAVQAREIVKANNLTDQ 131

Query: 97  LEIIQDDALKVDFEKFFNI 115
           + +I      VD E+  ++
Sbjct: 132 VVVIHGRVEDVDLEEKVDV 150


>gi|213409922|ref|XP_002175731.1| hexaprenyldihydroxybenzoate methyltransferase [Schizosaccharomyces
           japonicus yFS275]
 gi|212003778|gb|EEB09438.1| hexaprenyldihydroxybenzoate methyltransferase [Schizosaccharomyces
           japonicus yFS275]
          Length = 268

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 30  LLDL---NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L++    + ++ I +      G  ++++G G G L++ L  LGA  V
Sbjct: 54  LMNPPRIDFIRSIVKQKNWFPGKRILDVGCGAGILSESLARLGAHVV 100


>gi|297204296|ref|ZP_06921693.1| esterase [Streptomyces sviceus ATCC 29083]
 gi|197715849|gb|EDY59883.1| esterase [Streptomyces sviceus ATCC 29083]
          Length = 231

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L D  I  +I +SS    G T+ E    P  LT+ L  L A  +  +  D++  P++ ++
Sbjct: 141 LTDEQIA-RIIQSSSPHPGATLTE----PAVLTRPLGELPATYIKCLLDDEEPMPVVAEL 195

Query: 90  SSQHPNRLEIIQDD 103
                   E+++ D
Sbjct: 196 LK--SEHWELVEMD 207


>gi|153826532|ref|ZP_01979199.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149739712|gb|EDM53919.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 240

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ--FFPILKDISSQHPNRLEIIQDDALK 106
           T+++IG G G L+ M         +  ++ +Q            S    R+E    D L 
Sbjct: 45  TILDIGCGTGLLSLMCAQRFPHAHITALDIEQTAYLAAEHNRQQSPWAERIECQHADILH 104

Query: 107 VDFEKFFNISSPIRIIANLPYNIG 130
               K F       II N PY   
Sbjct: 105 WQLSKRF-----AAIICNPPYFNS 123


>gi|144900193|emb|CAM77057.1| SAM-dependent methyltransferases [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 327

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 30  LLDLNILKK------IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           L   N++++      I E+    +G  VI++G G G+L+++L   GA +V+ +E   +  
Sbjct: 95  LKKENVMQRRRNSDVIVETLEL-EGKRVIDVGCGDGHLSRLLAKNGA-QVLGVECSPR-- 150

Query: 84  PILKDISSQHPNRLEIIQD 102
            + K  +++    +EI+  
Sbjct: 151 QLAKARAAEPMAGVEIVDG 169


>gi|126726704|ref|ZP_01742544.1| SAM-dependent methyltransferase [Rhodobacterales bacterium
           HTCC2150]
 gi|126704033|gb|EBA03126.1| SAM-dependent methyltransferase [Rhodobacterales bacterium
           HTCC2150]
          Length = 280

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRL 97
             +        V+E+G+G G   + +       +  +E    +  + + ++++      +
Sbjct: 60  ISACKIKARDRVLEVGSGWGGCARHIANATGATITAVELQADYDRVARKLTARTNLGGGV 119

Query: 98  EIIQDDALKVDFE 110
           E +  D L+++ E
Sbjct: 120 EHVNADFLQLEIE 132


>gi|91085293|ref|XP_968143.1| PREDICTED: similar to spermine synthase [Tribolium castaneum]
 gi|270009119|gb|EFA05567.1| hypothetical protein TcasGA2_TC015756 [Tribolium castaneum]
          Length = 369

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 23/109 (21%)

Query: 11  KTILSHYKIIPKKYMGQNFLL-DLNILKKIAES------------SGSLDGITVIEIGAG 57
           +T     +I+  K +G N L+ D   L+ I+E+              +     ++ +G G
Sbjct: 148 RTPYQKIQIVHSKSLG-NMLVLDD--LQNISEADLIYTETLMGRGIENYKDKEIVILGGG 204

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G L   LL    ++VI++E D+        +       +  I  D L 
Sbjct: 205 DGALLYELLKEKPKEVIMLEIDEV-------VMKACAKHMRSICGDVLD 246


>gi|13488153|ref|NP_085860.1| DNA methylase [Mesorhizobium loti MAFF303099]
 gi|14028109|dbj|BAB54701.1| DNA methylase [Mesorhizobium loti MAFF303099]
          Length = 1011

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 22/144 (15%)

Query: 39  IAES--SGSLD----GITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           I  +  +G       G  V+E G G G    L       G   V  +E D    P+   I
Sbjct: 169 IIRAIWAGLQRLGWRGGRVLEPGIGTGLFPAL-MPEDRRGVSHVTGVEID----PVTARI 223

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY---NIGTRLLFNWISADTWPPF 146
           +     R  I+  D    D   +F+++     I N P+    + +   +  +       F
Sbjct: 224 ARLVQPRARIVNGDFSCTDLPAYFDLA-----IGNPPFSNRTVRSDRTYRSMGLRLHDYF 278

Query: 147 WESLTLLFQKEVGERITAQKNSPH 170
                 L +            +  
Sbjct: 279 IARSVDLLKPGALAAFVTSSGTMD 302


>gi|74025326|ref|XP_829229.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834615|gb|EAN80117.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 417

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKD 88
           I  +     G  V E G G G+LT  L    A   IV   D   ++    L++
Sbjct: 156 IVFNLRLRPGHRVAEAGTGSGSLTHSLARTVAPDGIVYTYDFHKKRCLEALQE 208


>gi|293364550|ref|ZP_06611273.1| adenine-specific methyltransferase [Streptococcus oralis ATCC
           35037]
 gi|307702548|ref|ZP_07639501.1| hypothetical protein SMSK23_0388 [Streptococcus oralis ATCC 35037]
 gi|291316962|gb|EFE57392.1| adenine-specific methyltransferase [Streptococcus oralis ATCC
           35037]
 gi|307623894|gb|EFO02878.1| hypothetical protein SMSK23_0388 [Streptococcus oralis ATCC 35037]
          Length = 317

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            + I+++EIG+G G L    LT  A+KV  + +E D     +   ++     +   +Q D
Sbjct: 108 KEEISILEIGSGMGILGATFLTSLAKKVDYLGVEVDDLLIDLAASMADVIGLQAGFVQGD 167

Query: 104 ALK 106
           A++
Sbjct: 168 AVR 170


>gi|301095864|ref|XP_002897031.1| arginine n-methyltransferase, putative [Phytophthora infestans
           T30-4]
 gi|262108460|gb|EEY66512.1| arginine n-methyltransferase, putative [Phytophthora infestans
           T30-4]
          Length = 505

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
             I  +        V+++G G G L+      GA KVI I++  +   + ++I +     
Sbjct: 215 NAIINNPQVFKDKVVLDVGCGTGILSMFAAQAGAAKVIGIDR-SEMGDVAREIVAANGFS 273

Query: 95  NRLEIIQD 102
           + + I++ 
Sbjct: 274 DVITILRG 281


>gi|302409558|ref|XP_003002613.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261358646|gb|EEY21074.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 242

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 16/125 (12%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLT---QMLLTLGARKVIVIEKDQQFFPILKDI 89
             +  K+ +         +++IG G G L      +L+ G   V  I+            
Sbjct: 22  PKLATKVVQWLDVQKDDVILDIGCGDGVLNIEFAKVLSQGQGAVHGIDASPSMISAAARA 81

Query: 90  SSQHPN----RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           +   P       E++  + + +D  +F     P R             +   +  DT   
Sbjct: 82  AEAAPGGDRCTFEVVDANKMNLDRSRF-----PFRYTKAF----SNAAMHWILKPDTAST 132

Query: 146 FWESL 150
           F+  +
Sbjct: 133 FFARV 137


>gi|154506608|ref|ZP_02043065.1| hypothetical protein RUMGNA_03875 [Ruminococcus gnavus ATCC 29149]
 gi|153793361|gb|EDN75783.1| hypothetical protein RUMGNA_03875 [Ruminococcus gnavus ATCC 29149]
          Length = 283

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEII 100
               V+ IG G G   + L      +K+ V+E D     + +    Q       +R+ I 
Sbjct: 75  KVENVLVIGGGDGGCVRELAKYNTIQKIDVVEVDPLLVEVCRKYFPQIASSLDDDRVTIY 134

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            +D L+    +  N+   I I +  P+     L       + +    E   ++ Q E
Sbjct: 135 NEDGLRFVRSR-SNVYDLILIDSPNPFGPAEGLFTKEFYGNCYNALHEDGIMINQHE 190


>gi|157864296|ref|XP_001680858.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68124150|emb|CAJ02133.1| putative arginine N-methyltransferase, type III [Leishmania major
           strain Friedlin]
          Length = 438

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVD 108
           V+EIGAG G L+ M   L A+ V+ +E   +   + +   +  +  ++++++    L  +
Sbjct: 129 VLEIGAGSGLLSMMAAKLNAKWVVAVEGSSEMASLARSNIATNRLQDKVKVLNM--LSTE 186

Query: 109 FEKFFNISSPIRIIANLPYNI 129
            +       P  +++ +   +
Sbjct: 187 LKPCDLPEPPSILVSEIFGTL 207


>gi|92114677|ref|YP_574605.1| rRNA (guanine-N(2)-)-methyltransferase [Chromohalobacter salexigens
           DSM 3043]
 gi|122419455|sp|Q1QUF2|RSMC_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|91797767|gb|ABE59906.1| 16S rRNA m(2)G 1207 methyltransferase [Chromohalobacter salexigens
           DSM 3043]
          Length = 333

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           + G   G  V+++G G G L   L   GA +V  ++ D       +     +    E  Q
Sbjct: 187 ALGDPAGQRVLDVGCGDGILGAWLGVRGA-QVAAVDLDAFAVAATRRTFQANGVAGEAWQ 245

Query: 102 DDALKVDFEKFFNISSPI-RIIANLPYN 128
            D        F ++S     I++N P++
Sbjct: 246 SDV-------FGDVSGSYDAIVSNPPFH 266


>gi|15678764|ref|NP_275881.1| hypothetical protein MTH738 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|38258667|sp|O26833|Y738_METTH RecName: Full=Uncharacterized protein MTH_738
 gi|2621827|gb|AAB85242.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 248

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           N L D   L    E+  S       ++GAG G L+    +  A +VI IE+D +      
Sbjct: 11  NLLGDHERLAAFREAISSRARGLTYDLGAGSGILS-FFASEYADRVIAIERDPKIAACAG 69

Query: 88  DISSQHPNRLEIIQDDALKVDFEK 111
           +  S   N + ++ +DAL  +F  
Sbjct: 70  ENLSGLDN-VSVVNEDALHYEFSA 92


>gi|77411948|ref|ZP_00788278.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           CJB111]
 gi|77161974|gb|EAO72955.1| ribosomal protein L11 methyltransferase [Streptococcus agalactiae
           CJB111]
          Length = 317

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKDIYAYDLDDVAVRVAQENIDMNPATENIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|313224392|emb|CBY20181.1| unnamed protein product [Oikopleura dioica]
          Length = 498

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQHPN 95
           I ++        V+++G G G L+      GA+ V  +E  +       ++++  +   +
Sbjct: 184 ILKNPHLFKDKVVVDVGCGTGILSMFAAQAGAKIVYALEMSEIAFDAIDVVRE--NGLAD 241

Query: 96  RLEIIQDDA 104
           +++II+  A
Sbjct: 242 KVKIIKGKA 250


>gi|313223782|emb|CBY42084.1| unnamed protein product [Oikopleura dioica]
          Length = 428

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQHPN 95
           I ++        V+++G G G L+      GA+ V  +E  +       ++++  +   +
Sbjct: 114 ILKNPHLFKDKVVVDVGCGTGILSMFAAQAGAKIVYALEMSEIAFDAIDVVRE--NGLAD 171

Query: 96  RLEIIQDDA 104
           +++II+  A
Sbjct: 172 KVKIIKGKA 180


>gi|290976893|ref|XP_002671173.1| predicted protein [Naegleria gruberi]
 gi|284084740|gb|EFC38429.1| predicted protein [Naegleria gruberi]
          Length = 236

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 12/77 (15%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK------------DISS 91
             ++G  V+++G G G L      L A+ V  ++ D+    I +            +++ 
Sbjct: 46  DDIEGKEVLDLGIGTGMLGLGACLLEAKHVTGVDIDEDALNICRENVKSIIDDVDEEMAQ 105

Query: 92  QHPNRLEIIQDDALKVD 108
               RL++IQ D L+ +
Sbjct: 106 HFTYRLDLIQSDVLQFE 122


>gi|238059902|ref|ZP_04604611.1| methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237881713|gb|EEP70541.1| methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 263

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +   DG  V E G G G L   L+  G   V  IE        L+  +    +R+++   
Sbjct: 51  AELADGGPVCEFGIGTGRLALPLVERG-LTVAGIEGSPDMVAGLRSKAGG--DRIDVAVG 107

Query: 103 DALKVDFEKFFNI 115
           D         F +
Sbjct: 108 DFTHTRVPGDFAL 120


>gi|257062917|ref|YP_003142589.1| methylase involved in ubiquinone/menaquinone biosynthesis
          [Slackia heliotrinireducens DSM 20476]
 gi|256790570|gb|ACV21240.1| methylase involved in ubiquinone/menaquinone biosynthesis
          [Slackia heliotrinireducens DSM 20476]
          Length = 291

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            +    +  L G TV +IG G G +   L   G   VI  +  +     L++    H
Sbjct: 41 ADEFIAKARILPGETVFDIGCGTGTIACKLAARG-HSVIAADFSEGMLDKLRENMQLH 97


>gi|256425185|ref|YP_003125838.1| hypothetical protein Cpin_6231 [Chitinophaga pinensis DSM 2588]
 gi|256040093|gb|ACU63637.1| Protein of unknown function methylase putative [Chitinophaga
           pinensis DSM 2588]
          Length = 183

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           ++I  G G+++  L + G   + ++EKD      ++  +      +++ + D  +   + 
Sbjct: 49  LDIFGGTGSISYELASRGVTDLTIVEKDPNMADFIQKTAKSLEVPVKLQRMDVFRYLEQC 108

Query: 112 FFNISSPIRIIANLPYNIGT 131
                    I A  PY + T
Sbjct: 109 ---TEKFNFIFAGPPYALTT 125


>gi|218245271|ref|YP_002370642.1| type 12 methyltransferase [Cyanothece sp. PCC 8801]
 gi|257058304|ref|YP_003136192.1| methyltransferase type 12 [Cyanothece sp. PCC 8802]
 gi|218165749|gb|ACK64486.1| Methyltransferase type 12 [Cyanothece sp. PCC 8801]
 gi|256588470|gb|ACU99356.1| Methyltransferase type 12 [Cyanothece sp. PCC 8802]
          Length = 259

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           G  V+E+GAG G  T++L     ++ + +E D Q   I+ D  +Q  
Sbjct: 56  GNEVLEVGAGMGGTTKVLCKSHHKRWLCLEPDAQLASIIDDSINQKD 102


>gi|42601307|gb|AAS21334.1| protein arginine N-methyltransferase 3-like protein [Oikopleura
           dioica]
          Length = 522

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQHPN 95
           I ++        V+++G G G L+      GA+ V  +E  +       ++++  +   +
Sbjct: 208 ILKNPHLFKDKVVVDVGCGTGILSMFAAQAGAKIVYALEMSEIAFDAIDVVRE--NGLAD 265

Query: 96  RLEIIQDDA 104
           +++II+  A
Sbjct: 266 KVKIIKGKA 274


>gi|87310293|ref|ZP_01092424.1| cyclopropane-fatty-acyl-phospholipid synthase [Blastopirellula
           marina DSM 3645]
 gi|87287042|gb|EAQ78945.1| cyclopropane-fatty-acyl-phospholipid synthase [Blastopirellula
           marina DSM 3645]
          Length = 429

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 30  LLDLNI--LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           L D ++  L+ I E         V+EIG G G         G R + 
Sbjct: 191 LHDASVAKLQLICEKLELRSSDRVLEIGTGWGGFALHAAKQGVRDLT 237


>gi|85708827|ref|ZP_01039893.1| cyclopropane-fatty-acyl-phospholipid synthase [Erythrobacter sp.
           NAP1]
 gi|85690361|gb|EAQ30364.1| cyclopropane-fatty-acyl-phospholipid synthase [Erythrobacter sp.
           NAP1]
          Length = 411

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 19/109 (17%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           S+   +  TV+EIG G G+L Q L   GA    +   D+Q      + S           
Sbjct: 195 SARLGNPKTVLEIGCGWGSLAQHLAVRGADVTAISLSDEQLAYARANTS----------- 243

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
                        +    R +      I +  +   +  + WP F + +
Sbjct: 244 --------PDIRYLKQDYRDVRGTFDAIASVEMVEALGREYWPTFMDCI 284


>gi|76800405|ref|ZP_00782027.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus agalactiae
           18RS21]
 gi|76584395|gb|EAO61378.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus agalactiae
           18RS21]
          Length = 177

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 60/138 (43%), Gaps = 16/138 (11%)

Query: 29  FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           FL D  +  K++ +        S       +++++G G G L   L  +   K  +++ +
Sbjct: 30  FLTDAGVFSKRMIDYGSQVLLNSLHFEKNKSLLDLGCGYGPLGISLAKVQGVKATMVDIN 89

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +   + K  ++++   +E+ Q +  + +  K F+      II+N P   G +++ + I 
Sbjct: 90  TRALELAKKNATRNGVVVEVFQSNIYE-NISKTFD-----YIISNPPIRAGKQVVHSIIE 143

Query: 140 ADTWP-PFWESLTLLFQK 156
                     SLT++ QK
Sbjct: 144 ESICYLNTGGSLTIVIQK 161


>gi|22537113|ref|NP_687964.1| hypothetical protein SAG0952 [Streptococcus agalactiae 2603V/R]
 gi|25010994|ref|NP_735389.1| hypothetical protein gbs0940 [Streptococcus agalactiae NEM316]
 gi|76788359|ref|YP_329668.1| methyltransferase domain-containing protein [Streptococcus
           agalactiae A909]
 gi|77406474|ref|ZP_00783529.1| Methyltransferase small domain family [Streptococcus agalactiae
           H36B]
 gi|77411028|ref|ZP_00787383.1| Methyltransferase small domain family [Streptococcus agalactiae
           CJB111]
 gi|77413257|ref|ZP_00789454.1| Methyltransferase small domain family [Streptococcus agalactiae
           515]
 gi|22533974|gb|AAM99836.1|AE014235_9 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
 gi|23095394|emb|CAD46599.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563416|gb|ABA46000.1| methyltransferase domain protein [Streptococcus agalactiae A909]
 gi|77160717|gb|EAO71831.1| Methyltransferase small domain family [Streptococcus agalactiae
           515]
 gi|77162952|gb|EAO73908.1| Methyltransferase small domain family [Streptococcus agalactiae
           CJB111]
 gi|77174909|gb|EAO77723.1| Methyltransferase small domain family [Streptococcus agalactiae
           H36B]
          Length = 196

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 60/138 (43%), Gaps = 16/138 (11%)

Query: 29  FLLDLNI-LKKIAE--------SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           FL D  +  K++ +        S       +++++G G G L   L  +   K  +++ +
Sbjct: 30  FLTDAGVFSKRMIDYGSQVLLNSLHFEKNKSLLDLGCGYGPLGISLAKVQGVKATMVDIN 89

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            +   + K  ++++   +E+ Q +  + +  K F+      II+N P   G +++ + I 
Sbjct: 90  TRALELAKKNATRNGVVVEVFQSNIYE-NISKTFD-----YIISNPPIRAGKQVVHSIIE 143

Query: 140 ADTWP-PFWESLTLLFQK 156
                     SLT++ QK
Sbjct: 144 ESICYLNTGGSLTIVIQK 161


>gi|329766402|ref|ZP_08257948.1| putative methylase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137171|gb|EGG41461.1| putative methylase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 181

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 13/96 (13%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           IA+     +G+T +++G+G G LT++L       + V+  D  F  +LK+ +    N + 
Sbjct: 22  IADYIEKENGLTALDVGSGSGYLTKLLAK---NFIFVVGTDINFI-VLKNQTYSTKNLVC 77

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
               DALK +F+          ++ NLPY    ++L
Sbjct: 78  CNGSDALKSEFD---------LVVCNLPYLATDQVL 104


>gi|308512681|gb|ADO32994.1| arginine N-methyltransferase 1 [Biston betularia]
          Length = 359

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 73  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLSDVIEIVK 131

Query: 102 D 102
            
Sbjct: 132 G 132


>gi|307564421|ref|ZP_07626962.1| RNA methyltransferase, RsmD family [Prevotella amnii CRIS 21A-A]
 gi|307346781|gb|EFN92077.1| RNA methyltransferase, RsmD family [Prevotella amnii CRIS 21A-A]
          Length = 176

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFN 114
           AG G+++  LL+ G ++V+ +EKD+     + + I     +   +++ DAL+        
Sbjct: 52  AGTGSISLELLSRGCKEVVTVEKDRDHARFIGQCIEKVKADNDILVKGDALRFIKACTRQ 111

Query: 115 ISSPIRIIANLPYNI 129
                 I A+ PY +
Sbjct: 112 FD---FIFADPPYAL 123


>gi|296447095|ref|ZP_06889027.1| Methyltransferase type 12 [Methylosinus trichosporium OB3b]
 gi|296255364|gb|EFH02459.1| Methyltransferase type 12 [Methylosinus trichosporium OB3b]
          Length = 274

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQ 81
          FL D  + + +   +G   G+ V++IG G G  +L    L   +  V+ +++D +
Sbjct: 27 FLND--LTEDMLRRAGLRPGMRVLDIGCGMGDVSLLAARLVGPSGSVVGVDRDAE 79


>gi|297544382|ref|YP_003676684.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842157|gb|ADH60673.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 308

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QH 93
           +L++I      +    V +IG G G L+     LGA++V   + D+    + +      +
Sbjct: 166 LLEEIV-----MPESIVFDIGCGSGILSIASGKLGAKEVYAADIDEVSVEVARQNVELNN 220

Query: 94  PNRLEIIQDDAL 105
              +++ + D L
Sbjct: 221 LQNVKVFKSDLL 232


>gi|313127018|ref|YP_004037288.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
 gi|312293383|gb|ADQ67843.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
          Length = 212

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
            E +   D   V+++G G G +   L    A++V+  +  +      ++ +     + +E
Sbjct: 36  VEHADPTDEDVVLDLGTGTGAIALALAP-DAKRVVGRDISEGMLEQAREKAQDAGIDNVE 94

Query: 99  IIQDDALKVDFEKFFNI 115
             +      ++E   +I
Sbjct: 95  FGEGRFRDPNYEDEVDI 111


>gi|255038863|ref|YP_003089484.1| methyltransferase small [Dyadobacter fermentans DSM 18053]
 gi|262828188|sp|C6VS84|TRMN6_DYAFD RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|254951619|gb|ACT96319.1| methyltransferase small [Dyadobacter fermentans DSM 18053]
          Length = 240

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHP--NRLEI 99
           +   D   +++IGAG G L+ M+       +I  +E D + F    +   Q P  +R+ +
Sbjct: 34  ADVEDADRILDIGAGTGLLSLMVAQRNTYAMIDAVEIDAEAFYQAGENVEQSPFHDRITL 93

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG---TRLLFNWISADTWPPFWESLTLLFQK 156
                 +   E  +++     II N P+      + +    I+       +E L    ++
Sbjct: 94  FHSAVQEFVSEHRYDV-----IITNPPFFQSDLLSPIDKKNIAHHAKSLDFEELLTAIER 148


>gi|182677677|ref|YP_001831823.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|263445947|sp|B2IGF2|RSMH_BEII9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|182633560|gb|ACB94334.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 355

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             +     G   ++   G G  T+ LL      V+ I++D +     + + ++   RL +
Sbjct: 28  VAALDCKKGGFYLDATFGAGGYTRALLAEPETHVLAIDRDPEAIAAGRALEAESAGRLIL 87

Query: 100 IQD 102
              
Sbjct: 88  AHG 90


>gi|163311154|pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-Fatty-Acyl-Phospholipid
           Synthase-Like Protein (Yp_807781.1) From Lactobacillus
           Casei Atcc 334 At 1.85 A Resolution
 gi|163311155|pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-Fatty-Acyl-Phospholipid
           Synthase-Like Protein (Yp_807781.1) From Lactobacillus
           Casei Atcc 334 At 1.85 A Resolution
          Length = 275

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPIL-------KD 88
           IAE+     G  ++EIG G G+L+ +L         V   D     +   L         
Sbjct: 35  IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL 94

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           ++    +RL +  +  L  D     +      ++A+  +   +      +
Sbjct: 95  LAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALL 144


>gi|168021064|ref|XP_001763062.1| protein arginine N-methyltransferase [Physcomitrella patens subsp.
           patens]
 gi|162685874|gb|EDQ72267.1| protein arginine N-methyltransferase [Physcomitrella patens subsp.
           patens]
          Length = 306

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
               V+++GAG G L+      GA+ V  +E         ++I  ++ + + + +I+ 
Sbjct: 23  KDKVVLDVGAGTGVLSLFCAKGGAKHVYAVEC-STMADTAREIVKANGYSDVVTVIKG 79


>gi|158523100|ref|YP_001530970.1| site-specific DNA-methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158511926|gb|ABW68893.1| site-specific DNA-methyltransferase [Desulfococcus oleovorans Hxd3]
          Length = 527

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 8   HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQML 65
           H+ +T         K  +GQ F    +I   +AE           +++ GAG G+L+   
Sbjct: 40  HTRRTASRLADPQQKSRLGQ-FFTPASIACFMAELFVPNRRKNCILLDAGAGVGSLSAAF 98

Query: 66  LTLGAR--------KVIVIEKDQQFFPILKDISSQHPNRLEI 99
           L             ++   E D+   P L+     +  +  I
Sbjct: 99  LDRWVDGEFDYKHIELHAFEIDETLHPYLRQTFELYKKKPTI 140


>gi|159045610|ref|YP_001534404.1| type 11 methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157913370|gb|ABV94803.1| methyltransferase type 11 [Dinoroseobacter shibae DFL 12]
          Length = 256

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A S  +  G + +++G G G     L+         +E    +  + +  +S++   LE+
Sbjct: 37  AASVPARAGQSCLDLGCGVGAAALCLMVRTGAACTGVELQPGYAALARANASRNDLPLEV 96

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
           I+ DA   D        S   +  N PY
Sbjct: 97  IEGDA--TDLPPDLRQRSFDHVFFNPPY 122


>gi|29833736|ref|NP_828370.1| methyltransferas [Streptomyces avermitilis MA-4680]
 gi|29610860|dbj|BAC74905.1| putative methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 221

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D ++L +            V+++G G G L      LGAR V  ++  ++     +  +
Sbjct: 20  HDTDLLARALRREDIDTSTEVLDLGTGSGALAVHAARLGAR-VTAVDISRRAVLTARLNA 78

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                R+ + + D             S   +++N PY
Sbjct: 79  LLAGRRVTVRRGD-----LTAAVPGRSYDLVVSNPPY 110


>gi|55376673|ref|YP_134524.1| hypothetical protein pNG7106 [Haloarcula marismortui ATCC 43049]
 gi|55229398|gb|AAV44818.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 272

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGN-LTQML----LTLGARKVIVIEKDQQFFPILKDISSQHP 94
           A ++ S   + V+EIGAG G  LT+ L    L  G      ++   +    L D      
Sbjct: 8   ARAADSDGPLRVLEIGAGIGTMLTRFLEWDVLPAGEVHYTAVDIQSENVAHLPDHIRDWA 67

Query: 95  NRLEIIQDD---ALKVDFEKF 112
              +I   D    LK +  + 
Sbjct: 68  VDRQISIGDSPLVLKAENRRI 88


>gi|116496047|ref|YP_807781.1| SAM-dependent methyltransferase [Lactobacillus casei ATCC 334]
 gi|116106197|gb|ABJ71339.1| SAM-dependent methyltransferase [Lactobacillus casei ATCC 334]
          Length = 274

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPIL-------KD 88
           IAE+     G  ++EIG G G+L+ +L         V   D     +   L         
Sbjct: 34  IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL 93

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           ++    +RL +  +  L  D     +      ++A+  +   +      +
Sbjct: 94  LAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALL 143


>gi|319651612|ref|ZP_08005739.1| ribosomal protein L11 methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317396679|gb|EFV77390.1| ribosomal protein L11 methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 313

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQD 102
              G  V+++G G G L+     LGA KV  ++ D+       L    ++  + +E+ Q 
Sbjct: 173 VKQGDKVVDVGTGSGVLSIAAAMLGAEKVKALDLDEVAVNSAKLNIKLNKVQDIVEVSQG 232

Query: 103 DALK 106
           + L 
Sbjct: 233 NLLD 236


>gi|300727618|ref|ZP_07061007.1| ribosomal protein L11 methyltransferase [Prevotella bryantii B14]
 gi|299775138|gb|EFI71741.1| ribosomal protein L11 methyltransferase [Prevotella bryantii B14]
          Length = 273

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 34  NILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
              + I  +     +    +++ G G G L      LGA+ ++  + D+      K  + 
Sbjct: 121 QTTRMIVSALLHMGVHDKRILDCGCGTGILGLAASKLGAKDIVGYDIDEWSVENAKHNAE 180

Query: 92  QHP-NRLEIIQDDA 104
            +    +EI   DA
Sbjct: 181 INGVKNMEIYHGDA 194


>gi|269960389|ref|ZP_06174762.1| protein-L-isoaspartate O-methyltransferase [Vibrio harveyi 1DA3]
 gi|269834816|gb|EEZ88902.1| protein-L-isoaspartate O-methyltransferase [Vibrio harveyi 1DA3]
          Length = 208

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  +    V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLDLKSNSNVLEIGTGSGYQTAVLAQI-VDHVYSVER----IKSLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D    +    P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWLGWEGKGPFDAI 145


>gi|312112636|ref|YP_003990952.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y4.1MC1]
 gi|311217737|gb|ADP76341.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y4.1MC1]
          Length = 288

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISS 91
             +L +I +       + V+++G G G +   L L   A  V  I+   +   + +  + 
Sbjct: 103 EGVLTRITQLFPRNTTVDVVDVGTGSGAIAITLALENPALSVTAIDISAEALQMAEQNAK 162

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +    +  I  D L+              +++N PY
Sbjct: 163 RLGADVAFICGDLLQ---PLIEANRKVDVVVSNPPY 195


>gi|304317930|ref|YP_003853075.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779432|gb|ADL69991.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 277

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQ 101
               G TV++IG G G +   +      KV  ++       + K+ +  +   +++  I+
Sbjct: 106 RLKSGDTVLDIGTGSGAIAVSIAKYKDVKVYAVDISDGALEVAKENADINGVSDKVIFIK 165

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            D     F    +      I++N PY     +
Sbjct: 166 SDL----FSSIPDGIRFDLIVSNPPYIRSNEI 193


>gi|228916212|ref|ZP_04079782.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843410|gb|EEM88488.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 239

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     ++     KV  +EK++      KD  S   
Sbjct: 25  LTKQLLAQLPFRHGANVLEIGCGTGKTAAYMVRNFRYKVTAVEKNEIMIQKAKDRWSFEG 84

Query: 95  NRLEIIQDDA 104
             +++I+ + 
Sbjct: 85  LDIQLIEGNV 94


>gi|291295727|ref|YP_003507125.1| methyltransferase small [Meiothermus ruber DSM 1279]
 gi|290470686|gb|ADD28105.1| methyltransferase small [Meiothermus ruber DSM 1279]
          Length = 364

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             D   V++IG G G L++ LL   A+ + ++E D       +    +      ++  D 
Sbjct: 226 PQDLGHVLDIGGGYGALSRPLLGR-AQGLTLLEDDWISVLCAQKNLGEAA---TVLHSDV 281

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIG 130
                E      +   II N P+++G
Sbjct: 282 ----DEALTEDQTFTTIITNPPFHVG 303


>gi|221636315|ref|YP_002524191.1| menaquinone biosynthesis methyltransferase UbiE [Thermomicrobium
           roseum DSM 5159]
 gi|221157656|gb|ACM06774.1| menaquinone biosynthesis methyltransferase UbiE [Thermomicrobium
           roseum DSM 5159]
          Length = 257

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDISSQHPNRLEIIQDDALKVD 108
            V+++  G G+L   L   GA +V+ ++  +       +  S+   +R+ ++  DA+++ 
Sbjct: 54  VVLDVATGTGDLAFELAAQGAARVVALDFSRTMLRHAARKRSASGLDRVTLLCGDAMRLP 113

Query: 109 FEK 111
           F  
Sbjct: 114 FRD 116


>gi|260798202|ref|XP_002594089.1| hypothetical protein BRAFLDRAFT_118790 [Branchiostoma floridae]
 gi|229279322|gb|EEN50100.1| hypothetical protein BRAFLDRAFT_118790 [Branchiostoma floridae]
          Length = 577

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I      ++G T++E+GAG G  T  L    A+ V  ++  + F    ++++  H N + 
Sbjct: 51  ILSLLPGIEGKTILELGAGIGRYTAPLAQQ-AKHVTAVDFMESFIRKNEEVNGHHKN-VR 108

Query: 99  IIQDDALKVDFEK 111
            +Q D  K++   
Sbjct: 109 FMQADVTKLEMPP 121



 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 42/148 (28%), Gaps = 10/148 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
               ++            V+++G G G     +       V  ++       I  + +SQ
Sbjct: 281 PETTEEFVARLDLQPDQHVLDVGCGIGGGDFYMAKKFGAVVTAMDLSTNMIEIATERASQ 340

Query: 93  HPN---RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS-ADTWPPFWE 148
                 R EI      +   E F  + S   I+          L   +++          
Sbjct: 341 ENITKVRFEISDCTKREYPAETFDVVYSRDTILHI---QDKLPLFKRFLTWLKPGGKLLI 397

Query: 149 SLTLLFQKE---VGERITAQKNSPHYGR 173
           S      KE   V ++  AQ+    Y  
Sbjct: 398 SDYCCGDKEWSDVFKQYVAQRGYTLYSP 425


>gi|153009057|ref|YP_001370272.1| type 12 methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151560945|gb|ABS14443.1| Methyltransferase type 12 [Ochrobactrum anthropi ATCC 49188]
          Length = 230

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PN 95
           +          TV+EIG G G NL +        K+  I+   +     +  + +    +
Sbjct: 42  MIAGLSVPKDGTVLEIGCGTGRNLIKAAENYPDAKLFGIDISAEMLDTARRAAERAGIED 101

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           R+ + + DA + D E+ F  +   RI  +   ++
Sbjct: 102 RVRLDRADAAQFDPERLFGQAGFDRIFISYAVSM 135


>gi|150400573|ref|YP_001324339.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
 gi|150013276|gb|ABR55727.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
          Length = 264

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS----QHPNRLEII 100
                 V ++G G G L  M+ +  A+KV  +E D       K+       ++   + +I
Sbjct: 32  VKPNDIVYDLGTGSGIL-AMVASQKAKKVYALELDPITCMYAKENLKINDYENIKNINLI 90

Query: 101 QDDALKVDFEKFFNI 115
           + DA + +F++  ++
Sbjct: 91  EADASEYNFKEQADV 105


>gi|134098849|ref|YP_001104510.1| ubiquinone/menaquinone biosynthesis methyltransferase
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291005793|ref|ZP_06563766.1| ubiquinone/menaquinone biosynthesis methyltransferase
          [Saccharopolyspora erythraea NRRL 2338]
 gi|133911472|emb|CAM01585.1| ubiquinone/menaquinone biosynthesis methyltransferase
          [Saccharopolyspora erythraea NRRL 2338]
          Length = 229

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
          E +G + G  V+E+G+  G LT+ L+  GA  V+ ++++ +    L  +      R E+
Sbjct: 29 ELAGDVAGKRVLELGSAAGALTEQLVYRGAH-VLGLDREPEMV-RLARLRLGQRARFEV 85


>gi|39975825|ref|XP_369303.1| hypothetical protein MGG_06161 [Magnaporthe oryzae 70-15]
 gi|145011530|gb|EDJ96186.1| hypothetical protein MGG_06161 [Magnaporthe oryzae 70-15]
          Length = 270

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +       V+E+G G G    +L +  A ++I +E +    P LK    +H   +R E++
Sbjct: 87  AHPPASGIVLEVGPGSGMWAGLLASTAATRIIGVEPNTAVHPALKAAVKKHDLESRYEVV 146


>gi|325284032|ref|YP_004256573.1| Ribosomal protein L11 methyltransferase [Deinococcus proteolyticus
           MRP]
 gi|324315841|gb|ADY26956.1| Ribosomal protein L11 methyltransferase [Deinococcus proteolyticus
           MRP]
          Length = 275

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           S+  L+G  V+++G G G L      LGA     ++ D Q  P+ ++ ++Q+
Sbjct: 120 SALDLNGKNVLDVGTGSGVLAMAAAKLGADLAYGVDIDPQTIPVARENAAQN 171


>gi|300785366|ref|YP_003765657.1| methyltransferase type 11 [Amycolatopsis mediterranei U32]
 gi|299794880|gb|ADJ45255.1| methyltransferase type 11 [Amycolatopsis mediterranei U32]
          Length = 252

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
          ++ +I ++S    G+ V+++G G G   +     G R V+ I+ D +     + 
Sbjct: 23 LVDRIVDAS---PGLDVLDVGCGTGIEARQFREAGCR-VLGIDPDARMAAFARR 72


>gi|298676096|ref|YP_003727846.1| type 11 methyltransferase [Methanohalobium evestigatum Z-7303]
 gi|298289084|gb|ADI75050.1| Methyltransferase type 11 [Methanohalobium evestigatum Z-7303]
          Length = 222

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNR 96
           KIA  +    G +V+EIG G G +   +     + V  I+       I +  +++   N 
Sbjct: 46  KIASYT--QSGDSVLEIGTGTGEIAFYIAP-KCKNVTGIDISPGMIDIARKKNTESGYNN 102

Query: 97  LEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTR 132
           L    +DA  L  D  +F  I     +  N+   +   
Sbjct: 103 LSFQVEDAYNLPFDKNEFTKI-----VSCNVLQTMKNP 135


>gi|296446772|ref|ZP_06888711.1| Methyltransferase type 11 [Methylosinus trichosporium OB3b]
 gi|296255775|gb|EFH02863.1| Methyltransferase type 11 [Methylosinus trichosporium OB3b]
          Length = 298

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFP 84
           NF  + + L  +A            +IG G G+ + +LL   A    ++  D   +    
Sbjct: 20  NFFWNADFLDLMAARLALSRVRRAADIGCGVGHWSALLLPRLAHGATLVGVDSEPRHIAG 79

Query: 85  ILKDISS-QHPNRLEIIQDDALKVDFEK 111
            L+   +     R+  +  DA ++    
Sbjct: 80  YLERFEALGAAERVTAVTADARRLPLPD 107


>gi|282864316|ref|ZP_06273372.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces sp.
           ACTE]
 gi|282560803|gb|EFB66349.1| Cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces sp.
           ACTE]
          Length = 457

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           L+ I    G   G  +++IG G G+LT         +V  +
Sbjct: 198 LELICRKLGLGPGARLLDIGCGWGSLTLHAAARHGAEVTAV 238


>gi|262831280|sp|A9MGW2|TRMN6_SALAR RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
          Length = 245

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHP--NRLE 98
           +   D   +++IG G G L  ML         V  +E D +     ++  +  P  +R+ 
Sbjct: 40  APVADVKRILDIGTGSGLLALMLAQRTDDNVPVDAVELDAEAAMQAQENVAHSPWAHRIT 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  DD  +    +         II+N PY 
Sbjct: 100 VHTDDIQRWAPRQTVRFD---LIISNPPYY 126


>gi|238024324|ref|YP_002908556.1| cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia glumae
           BGR1]
 gi|237878989|gb|ACR31321.1| Cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia glumae
           BGR1]
          Length = 404

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ-QFFPILKDIS-SQHP 94
           ++I ++ G   G+ V+EIG G G   +     G  +V  +   Q Q    L+ I+ +   
Sbjct: 178 QRIIDTLGLRPGMRVLEIGCGWGGFAEHAARQGI-QVHALTISQAQHAWALERIARAGLA 236

Query: 95  NRLEIIQDDALKVD 108
           +R+ I   D   VD
Sbjct: 237 DRVTIELRDYRDVD 250


>gi|298345707|ref|YP_003718394.1| putative methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|298235768|gb|ADI66900.1| possible methyltransferase [Mobiluncus curtisii ATCC 43063]
          Length = 226

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +  + G  V+E   G G   ++++         ++KD      +++I +    R  ++Q 
Sbjct: 4   AADIPGKRVVEFAPGLGKTAKIIIDAPVESYTGVDKDPDAAQRVQNIVADSGGR--VVQA 61

Query: 103 DA 104
           DA
Sbjct: 62  DA 63


>gi|224475620|ref|YP_002633226.1| hypothetical protein Sca_0128 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420227|emb|CAL27041.1| conserved hypothetical protein with SAM binding motif
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 263

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 13/149 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
                  V+++ +G G +  +L   G   +  IE   Q   + +     +Q   R++I +
Sbjct: 60  HLRKNDKVMDLCSGNGVIPLLLSHKGQHPIDAIEIQPQLVNMAERSIQHNQLSERIQIYE 119

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D LK +  + F  S    +  N PY    ++  +   A          TL    E    
Sbjct: 120 MD-LK-NVRQDFIPSQYTVVTCNPPYFKTAQMHQHQKEAHKIARHEVLCTLEDCVEAARH 177

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           +         GRL ++     +A  + D+
Sbjct: 178 LL-----KQGGRL-IMVH---RAERLMDV 197


>gi|187250665|ref|YP_001875147.1| methyltransferase family protein [Elusimicrobium minutum Pei191]
 gi|186970825|gb|ACC97810.1| Methyltransferase family protein [Elusimicrobium minutum Pei191]
          Length = 195

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +++I           +++IG G G L   L      +++ I+   +    L++   +HP 
Sbjct: 29  IEQILAKCEITQKAKILDIGCGTGVLFPFLSKYNPGEILSIDLSSKM---LEEFKRKHP- 84

Query: 96  RLEIIQDDALKVDFEKFF---NISSPIRIIANLPYNIGTRLLF-NWISADTWPPFWESLT 151
                + +AL  DFE      +    I      P+ +    +F N          +    
Sbjct: 85  -----EANALLADFEDIKLEEDYYDNIIAYNVFPHFVNKEAVFYNAFKFLKHGGIFVVAH 139

Query: 152 LLFQKEV-GERITAQKNSPHYGRLSVLTGWRT 182
            + ++E+       ++ S      S    +  
Sbjct: 140 SMTREELNSMHGRKKETSKDLLPSSEQMKYFY 171


>gi|163751682|ref|ZP_02158901.1| sun protein [Shewanella benthica KT99]
 gi|161328421|gb|EDP99577.1| sun protein [Shewanella benthica KT99]
          Length = 425

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 7/144 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A      DG  +++  A PG  T  LL L   +++ ++ D++    ++    +   + ++
Sbjct: 233 ATLLAPKDGELILDACAAPGGKTCHLLELANIELVAVDFDEKRLERVQQNLDRLSLKAKL 292

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLFQ 155
           +  DA   D + ++      RI+ + P +    +       W+   T      SL     
Sbjct: 293 VHGDA--ADIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQTDIDELASLQSKI- 349

Query: 156 KEVGERITAQKNSPHYGRLSVLTG 179
            +   +      +  Y   S+L  
Sbjct: 350 LDHCWQWLKPGGTLLYATCSILPQ 373


>gi|71994293|ref|NP_740808.2| hypothetical protein Y39G10AR.18 [Caenorhabditis elegans]
 gi|57901005|gb|AAT39977.2| Hypothetical protein Y39G10AR.18a [Caenorhabditis elegans]
          Length = 946

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 11/111 (9%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD-------QQF 82
            +   L  I +          +++G+G G L  +       +K + IE         Q  
Sbjct: 176 TNPEQLISIIDELNIGPQDVFVDLGSGIGQLVCLTAAYAKCKKSVGIELSQVPSNFAQDL 235

Query: 83  FPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
               K   S       + E IQ D L   F++     + +  I N  ++  
Sbjct: 236 AGYFKKFMSHFGKNHGKFEHIQGDFLNPKFKQLICEEATVIFINNFAFDAA 286


>gi|323180169|gb|EFZ65721.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli 1180]
          Length = 186

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 39  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 93

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +   +P    I+   P  I T L+   
Sbjct: 94  RLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQL 140


>gi|321442033|gb|ADW85431.1| arg methyltransferase [Trogoptera salvita]
          Length = 244

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I   +   + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANHLDDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|321442003|gb|ADW85416.1| arg methyltransferase [Lacosoma chiridota]
          Length = 244

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I   +   + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANHLDDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|269976468|ref|ZP_06183453.1| modification methylase PstI [Mobiluncus mulieris 28-1]
 gi|269935269|gb|EEZ91818.1| modification methylase PstI [Mobiluncus mulieris 28-1]
          Length = 498

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGAR-------KVI 74
            +GQ F   +   + IA+ +      T  V++ GAG G LT  L+    +       +V+
Sbjct: 28  KLGQYF-TPVTTAQLIAKMAELHQSGTIRVLDPGAGSGILTAALVNRILKETTSLKVEVL 86

Query: 75  VIEKDQQFFPILKDISSQHPN------RLEIIQDDAL---KVDFEKFFNISSPIRIIANL 125
            IE D Q    L+   +   N      +   +  D +                  +I N 
Sbjct: 87  AIETDTQLIRHLETTLNACINAGHGRVKASWVNADFILDSTGLNHSLNLEKKFDLVIENP 146

Query: 126 PY 127
           PY
Sbjct: 147 PY 148


>gi|266622173|ref|ZP_06115108.1| glycosyl transferase, group 2 family protein [Clostridium
          hathewayi DSM 13479]
 gi|288866125|gb|EFC98423.1| glycosyl transferase, group 2 family protein [Clostridium
          hathewayi DSM 13479]
          Length = 260

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 22/92 (23%)

Query: 3  MNNKSHSLKTILSHY----KIIPK-----KYMGQNFL----LDLNILKKIAESSGSLDGI 49
          M N S  +K +L  Y    K+  K     KY    FL       N+L+         +G 
Sbjct: 1  MGNISSEVKDLLIKYHGDTKLAMKEEPELKY----FLALSVTRENVLEW----FEFKEGA 52

Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
          +++E+G+G G LT  L +   ++V V+++D +
Sbjct: 53 SLLEVGSGCGALT-GLYSRRVKEVTVLDEDSE 83


>gi|239980423|ref|ZP_04702947.1| putative methyltransferase [Streptomyces albus J1074]
 gi|291452283|ref|ZP_06591673.1| methyltransferase [Streptomyces albus J1074]
 gi|291355232|gb|EFE82134.1| methyltransferase [Streptomyces albus J1074]
          Length = 252

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             ++       V++IG G G    +L    AR + V+  D     +    +    +R+  
Sbjct: 29  VRAAREFGARRVLDIGCGTGVFALLLA---ARGIEVVGVDPARASLDVARAKPGADRVRW 85

Query: 100 IQDDA 104
           I  DA
Sbjct: 86  ICGDA 90


>gi|221212738|ref|ZP_03585715.1| methyltransferase type 11 [Burkholderia multivorans CGD1]
 gi|221167837|gb|EEE00307.1| methyltransferase type 11 [Burkholderia multivorans CGD1]
          Length = 284

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 51  VIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           V+++G G G +T  +        +   ++   +      + + +   R+  +  DA
Sbjct: 52  VLDVGCGTGAVTLEIARRLGADAQCTGVDISARMIDAAHERAKRSGLRVHFVCADA 107


>gi|148241882|ref|YP_001227039.1| precorrin-6B methylase [Synechococcus sp. RCC307]
 gi|147850192|emb|CAK27686.1| Probable cobalt-precorrin-6Y C(15)-methyltransferase [Synechococcus
           sp. RCC307]
          Length = 203

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNR-LE 98
                     V ++G G G L   +   L   +V  +E+D +   +L+   ++   + LE
Sbjct: 40  AYLRPRPDSVVWDVGGGTGALALEIARLLPGGRVQALERDPEAIDLLELNRARFGIKNLE 99

Query: 99  IIQDDA 104
           +    A
Sbjct: 100 VFAGQA 105


>gi|311746855|ref|ZP_07720640.1| protein-L-isoaspartate O-methyltransferase [Algoriphagus sp. PR1]
 gi|126578540|gb|EAZ82704.1| protein-L-isoaspartate O-methyltransferase [Algoriphagus sp. PR1]
          Length = 218

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E      G  V+EIG G G    +L  LGA +V  IE  ++ +   K   ++    + + 
Sbjct: 77  ELLDIKPGNKVLEIGTGSGYQGTILHLLGA-EVYSIEYQKKLYEGTKRFLTRLGIEMNLF 135

Query: 101 QDD 103
             D
Sbjct: 136 YGD 138


>gi|84995606|ref|XP_952525.1| 3-demethylubiquinone-9 3-methyltransferase-like protein [Theileria
           annulata strain Ankara]
 gi|65302686|emb|CAI74793.1| 3-demethylubiquinone-9 3-methyltransferase-like protein, putative
           [Theileria annulata]
          Length = 309

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 22/189 (11%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            L G+ ++++G G G LT+ L   G+ KV+ I+ ++Q   + K     H +   +     
Sbjct: 103 VLKGLKILDVGCGGGILTESLAKFGS-KVLGIDPNEQLIEVAKSHKKTHFDDYHLRLG-- 159

Query: 105 LKVDFEKFFNISS-------PIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
           L+ D+    +  S         +  A+    + + ++ + +       F E+LT L  K 
Sbjct: 160 LRNDYCNNLDYKSISVYDFLTDKTRASFDIVVASEVIEH-VENREKERFLEALTSLV-KP 217

Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV----FFPSPKVTSTVIHFIPHLN 213
            G  +     S     LS          ++  +  H      F SP+  S     +  LN
Sbjct: 218 GGLFVITTPGS---SLLSYFVNVFLAENLLSKVPKHTHDFDLFISPRNCS---RILKKLN 271

Query: 214 PIPCCLESL 222
             P  ++ L
Sbjct: 272 FDPVSIQGL 280


>gi|70931431|ref|XP_737400.1| arginine n-methyltransferase [Plasmodium chabaudi chabaudi]
 gi|56512759|emb|CAH87304.1| arginine n-methyltransferase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 217

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             I ++   L    V+++G G G L+      GA+ V  IEK
Sbjct: 100 DAIRKNEHLLKDKIVLDVGCGTGILSFFAAKHGAKHVYSIEK 141


>gi|307946008|ref|ZP_07661343.1| methyltransferase type 11 [Roseibium sp. TrichSKD4]
 gi|307769672|gb|EFO28898.1| methyltransferase type 11 [Roseibium sp. TrichSKD4]
          Length = 212

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 18/109 (16%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLN-----ILKKIAESSGSLDGITVIEIG 55
           MT N  S     I   Y   P        L D       + + I   S       V+E+G
Sbjct: 1   MTQNTSSAFWNKIAEKYAARP--------LDDPEAYEVWLAQVI---SCLKKTDRVLEVG 49

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQHPNRLEIIQDD 103
            G G+ T + L    +  +  +   +   I ++  ++   + L  +  D
Sbjct: 50  CGTGS-TALRLAPHVQSFLAADFAPRMIEIAEEKWATDGADNLRFVCTD 97


>gi|296162248|ref|ZP_06845043.1| Cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia sp.
           Ch1-1]
 gi|295887515|gb|EFG67338.1| Cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia sp.
           Ch1-1]
          Length = 403

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           ++I ++ G  +G+ ++EIG G G        LG  
Sbjct: 177 QRIVDALGLREGMHILEIGCGWGGFALHAARLGIH 211


>gi|158336953|ref|YP_001518128.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Acaryochloris marina MBIC11017]
 gi|158307194|gb|ABW28811.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Acaryochloris marina MBIC11017]
          Length = 253

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 17/95 (17%)

Query: 24  YMGQNFLLDLNILKKI-----AESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIE 77
            +GQ+         +I      + +    G   ++I  G G+L ++L   +   KV  ++
Sbjct: 46  SLGQH---------RIWKMMAVKWANPKPGDQGLDICCGSGDLARLLAQKVSPGKVTGVD 96

Query: 78  KDQQFFPILKDISSQHPNRLEI--IQDDALKVDFE 110
              +   + +  S      L +  ++ DAL++ F 
Sbjct: 97  FSSEQLAVAEQRSKTQYPHLSLDWVEGDALELPFA 131


>gi|195953944|ref|YP_002122234.1| Methyltransferase type 12 [Hydrogenobaculum sp. Y04AAS1]
 gi|195933556|gb|ACG58256.1| Methyltransferase type 12 [Hydrogenobaculum sp. Y04AAS1]
          Length = 746

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I ++    D  TV+++G   G L + L      +V  I+ D      +KD    +   + 
Sbjct: 321 IVKAI--TDNSTVLDVGCSYGYLGEWLNKNKNCQVYGIDIDADAISYVKDR--GYYKDVF 376

Query: 99  IIQDDALKVDFEKF 112
           ++  D L+   +++
Sbjct: 377 LLDLDYLQNTKDEY 390


>gi|70605952|ref|YP_254822.1| hypothetical protein Saci_0104 [Sulfolobus acidocaldarius DSM 639]
 gi|68566600|gb|AAY79529.1| conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 155

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISS 91
             + +++   + + +   V+++G+G G +          +  I +E D++   +      
Sbjct: 10  PEVAREMLRCADANENDVVLDLGSGMGAILNVAKKEFKVKLAIGVELDKKLSFV---SYQ 66

Query: 92  QHPNRLEIIQDD 103
           ++   +EII  D
Sbjct: 67  ENNRDVEIICGD 78


>gi|17942640|pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
           Methyltransferase With S-Adenosylmethionine
 gi|17942641|pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
           Methyltransferase With Adenosine & Vyp(Isp)ha Substrate
 gi|17942642|pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
           Methyltransferase With Adenosine & Vyp(Isp)ha Substrate
 gi|17942645|pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
           Methyltransferase With Adenosine
 gi|17942646|pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
           Methyltransferase With S-Adenosyl-L-Homocysteine
          Length = 235

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + E +    G+ ++E+G G G    ++  +    V  IE+  +     K    +
Sbjct: 77  PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLER 136

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRII 122
                + +I  D       K F   +P  +I
Sbjct: 137 AGVKNVHVILGD-----GSKGFPPKAPYDVI 162


>gi|145221918|ref|YP_001132596.1| methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
 gi|315446346|ref|YP_004079225.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
 gi|145214404|gb|ABP43808.1| Methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
 gi|315264649|gb|ADU01391.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
          Length = 243

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 39  IA-ESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           I  +    +    ++E+GAG G L++ LL      ++ V + +      + D       R
Sbjct: 59  IVLDQISDVPDPKILELGAGHGALSRKLLDWHPTARLTVTDIEPASVAAIADSDVGAHPR 118

Query: 97  LEIIQDDALKVDFEK 111
             + Q DA  +D   
Sbjct: 119 ATVRQMDATALDAAD 133


>gi|298208474|ref|YP_003716653.1| protein-L-isoaspartate O-methyltransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83848397|gb|EAP86266.1| protein-L-isoaspartate O-methyltransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 213

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           E      G TV+EIG G G  T +L  LGA KV  +E+ ++ F   +    +   R
Sbjct: 74  ELLQIKRGDTVLEIGTGSGYQTAVLCYLGA-KVYTVERQRELFKKTERFLPKLGYR 128


>gi|119383335|ref|YP_914391.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222]
 gi|262824738|sp|A1AZK1|RSMH_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119373102|gb|ABL68695.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222]
          Length = 322

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G   + LL  GA +VI I++D   F + +  + ++ +RL +++     +D
Sbjct: 31  GAGGYARGLLEQGADRVIGIDRDPAVFRMAEAWAGEYGDRLRLVEGTFSDLD 82


>gi|325121141|gb|ADY80664.1| putative biotin biosynthesis protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 249

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K + QN       L  + +         V EIG G GNLT++L T    + +++      
Sbjct: 27  KQICQN-------LTGLVQQFCPTTMSRVFEIGCGSGNLTRLLATSFQFEELILN---DL 76

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           +  ++   S H   L+ +  D   +DF +  +
Sbjct: 77  YADVQQHFS-HQENLKWLIGDIETLDFPQQLD 107


>gi|292559370|gb|ADE32371.1| Ribosomal protein L11 methyltransferase [Streptococcus suis GZ1]
          Length = 315

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+++   + D+    + ++    + + + + +   
Sbjct: 179 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDEVAVRVAQENIDLNANTSNIHVAAG 238

Query: 103 DALK 106
           D L+
Sbjct: 239 DLLR 242


>gi|284046170|ref|YP_003396510.1| Cyclopropane-fatty-acyl-phospholipid synthase [Conexibacter woesei
           DSM 14684]
 gi|283950391|gb|ADB53135.1| Cyclopropane-fatty-acyl-phospholipid synthase [Conexibacter woesei
           DSM 14684]
          Length = 438

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ--QFFPILKDISSQH 93
           L++I  +        V+EIG G G            +V      +      +    ++  
Sbjct: 172 LERIGRTLDLRPSDHVLEIGTGWGGFAIHAAQRWGCRVTTTTISRAQHEHAVAAVRAAGL 231

Query: 94  PNRLEIIQDD 103
            +R+ ++  D
Sbjct: 232 ADRVTVLLQD 241


>gi|258513429|ref|YP_003189651.1| modification methylase, HemK family [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777134|gb|ACV61028.1| modification methylase, HemK family [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 289

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
             + + V++IG G G +   +  + +R +V  ++  +    + +  ++ H    R+    
Sbjct: 112 PGEELLVLDIGTGSGAIAVSMARMNSRLRVYAVDCSRDALVLAQHNAAIHGVAGRIHFFH 171

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            D L               I ANLPY     +
Sbjct: 172 GDLL-YPLSNLALEGKADLIAANLPYVPSGDI 202


>gi|253752747|ref|YP_003025888.1| ribosomal protein L11 methyltransferase [Streptococcus suis SC84]
 gi|253754572|ref|YP_003027713.1| ribosomal protein L11 methyltransferase [Streptococcus suis P1/7]
 gi|253756505|ref|YP_003029645.1| ribosomal protein L11 methyltransferase [Streptococcus suis BM407]
 gi|251817036|emb|CAZ52688.1| ribosomal protein L11 methyltransferase [Streptococcus suis SC84]
 gi|251818969|emb|CAZ56816.1| ribosomal protein L11 methyltransferase [Streptococcus suis BM407]
 gi|251820818|emb|CAR47584.1| ribosomal protein L11 methyltransferase [Streptococcus suis P1/7]
 gi|319759165|gb|ADV71107.1| ribosomal protein L11 methyltransferase [Streptococcus suis JS14]
          Length = 317

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+++   + D+    + ++    + + + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDEVAVRVAQENIDLNANTSNIHVAAG 228

Query: 103 DALK 106
           D L+
Sbjct: 229 DLLR 232


>gi|254172606|ref|ZP_04879281.1| protein-L-isoaspartate O-methyltransferase [Thermococcus sp. AM4]
 gi|214033535|gb|EEB74362.1| protein-L-isoaspartate O-methyltransferase [Thermococcus sp. AM4]
          Length = 219

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + + +    G+ V+EIG G G    ++  L   +V  +E+  +     ++   +
Sbjct: 66  PHMVAIMLQLADLRPGMNVLEIGTGSGWNAALMAELVKGEVYTVERLPELVEFARENLER 125

Query: 93  HPNR-LEIIQDD 103
              + + +I  D
Sbjct: 126 AGVKGVHVIPGD 137


>gi|195500943|ref|XP_002097590.1| GE24405 [Drosophila yakuba]
 gi|194183691|gb|EDW97302.1| GE24405 [Drosophila yakuba]
          Length = 345

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 28  NFLLD----LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           N L D          I ++        V+++G G G L+      GA KVI +E      
Sbjct: 35  NMLRDSVRTEAFRDAILQNRELFRDKVVLDVGCGTGILSLFAAEAGASKVIAVEC-TDIA 93

Query: 84  PILKDIS--SQHPNRLEIIQD 102
            + ++I   +Q  + +++++ 
Sbjct: 94  DLAEEIVRDNQKEDVVKVVKG 114


>gi|153006076|ref|YP_001380401.1| type 12 methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152029649|gb|ABS27417.1| Methyltransferase type 12 [Anaeromyxobacter sp. Fw109-5]
          Length = 255

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 27  QNFLLD-LNIL-KKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           Q+FL D   +  ++         LDG TV++IG   G  +  +   GA +V+ ++ D ++
Sbjct: 35  QHFLGDYPAVAWER-VSHVLPERLDGRTVLDIGCNAGFFSLEMARRGAARVVGVDSDPRY 93

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADT 142
               +  +      +E  +   L V           + +   + Y++        ++ D 
Sbjct: 94  LAQARLAAEVSGLDVEWRE---LSVYDVARLGEKFDVVLFMGVLYHLRHP----LLALDL 146

Query: 143 WPPFWESLTLLFQKEV 158
                   TL+FQ  +
Sbjct: 147 VREHVARDTLVFQSMI 162


>gi|146321961|ref|YP_001201672.1| ribosomal protein L11 methyltransferase [Streptococcus suis
           98HAH33]
 gi|145692767|gb|ABP93272.1| Ribosomal protein L11 methylase [Streptococcus suis 98HAH33]
          Length = 327

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+++   + D+    + ++    + + + + +   
Sbjct: 179 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDEVAVRVAQENIDLNANTSNIHVAAG 238

Query: 103 DALK 106
           D L+
Sbjct: 239 DLLR 242


>gi|84872468|gb|ABC67279.1| putative O-methyltransferase [Streptomyces hygroscopicus subsp.
           limoneus]
          Length = 214

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 51  VIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALK 106
           V+EIG   G  T  L        +V  +E D +     +    ++   +R++I+  DA  
Sbjct: 58  VLEIGTLFGYSTIHLARGLPEGGRVTTLEIDPRAAEAARRNLRTAGVEDRVDIVVGDACA 117

Query: 107 V 107
            
Sbjct: 118 Y 118


>gi|88603852|ref|YP_504030.1| methyltransferase small [Methanospirillum hungatei JF-1]
 gi|88189314|gb|ABD42311.1| methyltransferase [Methanospirillum hungatei JF-1]
          Length = 202

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +G +   TV+++G G G L      LGA +V+ +E D +   I +  +      +  I+ 
Sbjct: 43  AGDITDRTVLDLGCGTGILAIGAALLGA-EVVAVEDDVEAIRIAEANARDLGCSIRFIKT 101

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           D      E    I     +I N P+   T 
Sbjct: 102 DV--AGEEALALIPDCDTVIMNPPFGAQTE 129


>gi|58197434|dbj|BAD88649.1| hypothetical protein [Streptococcus suis]
          Length = 275

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+++   + D+    + ++    + + + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDEVAVRVAQENIDLNANTSNIHVAAG 228

Query: 103 DALK 106
           D L+
Sbjct: 229 DLLR 232


>gi|223934149|ref|ZP_03626092.1| ribosomal protein L11 methyltransferase [Streptococcus suis
           89/1591]
 gi|330833710|ref|YP_004402535.1| ribosomal protein L11 methyltransferase [Streptococcus suis ST3]
 gi|223897190|gb|EEF63608.1| ribosomal protein L11 methyltransferase [Streptococcus suis
           89/1591]
 gi|329307933|gb|AEB82349.1| ribosomal protein L11 methyltransferase [Streptococcus suis ST3]
          Length = 317

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+++   + D+    + ++    + + + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDEVAVRVAQENIDLNANTSNIHVAAG 228

Query: 103 DALK 106
           D L+
Sbjct: 229 DLLR 232


>gi|330838434|ref|YP_004413014.1| Ribosomal protein L11 methyltransferase [Selenomonas sputigena ATCC
           35185]
 gi|329746198|gb|AEB99554.1| Ribosomal protein L11 methyltransferase [Selenomonas sputigena ATCC
           35185]
          Length = 313

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 26  GQNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           GQ+             +       G+TV ++G G G L  +   LGA++V  ++ D    
Sbjct: 155 GQH-----ATTSLCIRALEDLVRPGMTVFDVGTGSGVLAIVAAKLGAKRVEAVDFDPVAV 209

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
            + ++   Q+        +D ++ +      
Sbjct: 210 RVARENVRQNG------AEDVVRTERSDLLK 234


>gi|326330059|ref|ZP_08196373.1| putative SAM-dependent methyltransferase protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325952267|gb|EGD44293.1| putative SAM-dependent methyltransferase protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 380

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           + +IL +    +    G  V+EIG GPG+  + L   G  +V   +  + F   L+ 
Sbjct: 202 NRSILDRF--LAELEPGDHVLEIGTGPGHDAKAL-EAGGVRVRRTDISEGFVAHLRK 255


>gi|308051060|ref|YP_003914626.1| methyltransferase type 11 [Ferrimonas balearica DSM 9799]
 gi|307633250|gb|ADN77552.1| Methyltransferase type 11 [Ferrimonas balearica DSM 9799]
          Length = 208

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 20/98 (20%)

Query: 8   HSLKTILSHYKIIPK-KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL 66
           + L+ +   +  +P+ K +G                 G   G   +EIG G G   +++ 
Sbjct: 13  NPLRALAQRHFEVPRLKALG-----------------GPCPGAVALEIGGGQGEGARLIQ 55

Query: 67  -TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              GA++VI ++ D       +    +  + L  +Q D
Sbjct: 56  SEFGAQQVISLDLDFDMVSRARQRLGERDDIL-CLQAD 92


>gi|307332393|ref|ZP_07611462.1| Methyltransferase type 12 [Streptomyces violaceusniger Tu 4113]
 gi|306881954|gb|EFN13071.1| Methyltransferase type 12 [Streptomyces violaceusniger Tu 4113]
          Length = 255

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
          +V+E+G G G  T+ L  LG   V  IE       + +   +   N
Sbjct: 31 SVLEVGCGTGQATRSLAALGC-SVTAIEPGTDMAALARQRLASFRN 75


>gi|299134838|ref|ZP_07028030.1| protein-L-isoaspartate O-methyltransferase [Afipia sp. 1NLS2]
 gi|298590648|gb|EFI50851.1| protein-L-isoaspartate O-methyltransferase [Afipia sp. 1NLS2]
          Length = 680

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---- 88
             I+  +AE+     G  V+EIGAG G    +L  + A  V  +E   +  P+ +     
Sbjct: 76  PYIVAFMAEALLLKGGERVLEIGAGSGYAAAVLSEI-AGAVYTVE---RLGPLAERAAIL 131

Query: 89  ISSQHPNRLEIIQDDALKVDF 109
           ++    + + ++  D  K   
Sbjct: 132 LAELGYHNVHVLHGDGTKGWP 152


>gi|291276853|ref|YP_003516625.1| hypothetical protein HMU06260 [Helicobacter mustelae 12198]
 gi|290964047|emb|CBG39887.1| Putative hypothetical protein [Helicobacter mustelae 12198]
          Length = 258

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                +++++GAG G L  +     A    ++EKD     + +  ++ +    E+ Q D 
Sbjct: 32  LRKKFSLLDVGAGSGILGLLCARDFAISATLVEKDAHNAFLAQQNAATNQLEAEVYQGDF 91

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIG 130
           L     + +++     I++N P+   
Sbjct: 92  LDFCSSERYDV-----ILSNPPFYRS 112


>gi|260888227|ref|ZP_05899490.1| ribosomal protein L11 methyltransferase [Selenomonas sputigena ATCC
           35185]
 gi|260862061|gb|EEX76561.1| ribosomal protein L11 methyltransferase [Selenomonas sputigena ATCC
           35185]
          Length = 320

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 26  GQNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           GQ+             +       G+TV ++G G G L  +   LGA++V  ++ D    
Sbjct: 162 GQH-----ATTSLCIRALEDLVRPGMTVFDVGTGSGVLAIVAAKLGAKRVEAVDFDPVAV 216

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
            + ++   Q+        +D ++ +      
Sbjct: 217 RVARENVRQNG------AEDVVRTERSDLLK 241


>gi|257125535|ref|YP_003163649.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b]
 gi|257049474|gb|ACV38658.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b]
          Length = 308

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILK 87
           L D  ++  I     ++     +    G G  T+ +L   ++  KV+ I++D Q     K
Sbjct: 8   LFDE-VMDNIITDKDAVYVDCTL----GGGGHTEGILENSSKNSKVVAIDQDVQAIEFAK 62

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
               ++ N+L+I QD+   +D   +      +  I
Sbjct: 63  KRLEKYANKLQIFQDNFRNIDTAVYLAGFEKVDRI 97


>gi|190573790|ref|YP_001971635.1| hypothetical protein Smlt1810 [Stenotrophomonas maltophilia K279a]
 gi|190011712|emb|CAQ45331.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 192

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 14/114 (12%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDAL 105
           G  V+++ AG G L    ++ GA    ++E+D Q    L    +  Q  +++ ++Q DAL
Sbjct: 52  GARVLDLFAGSGALGLEAVSRGAAHATLVERDAQLGRNLTAAVAKLQAADQITVVQADAL 111

Query: 106 KV------DFEKFFNISSPIR------IIANLPYNIGTRLLFNWISADTWPPFW 147
           +              +  P        ++A LP ++         S     P  
Sbjct: 112 RWLQGAPAQQADLVFVDPPFADGLWQDVLAQLPRHLAADAWLYLESPAGHVPVL 165


>gi|163746709|ref|ZP_02154066.1| hypothetical protein OIHEL45_14939 [Oceanibulbus indolifex
          HEL-45]
 gi|161379823|gb|EDQ04235.1| hypothetical protein OIHEL45_14939 [Oceanibulbus indolifex
          HEL-45]
          Length = 591

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 13/74 (17%)

Query: 29 FLLDLNILK---------KIAES-SGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVI 76
          FL D  I +         +IA + +    G  V+E+GAG G L   +    A    V+  
Sbjct: 24 FLNDTRIQRINAGRYEGQEIAGALAVIRPGDRVLEMGAGLG-LVGAIAARKAGPEAVLSF 82

Query: 77 EKDQQFFPILKDIS 90
          E +    P ++ + 
Sbjct: 83 EANPNLIPHIRALY 96


>gi|161502014|ref|YP_001569126.1| protein-L-isoaspartate O-methyltransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189036860|sp|A9MF32|PIMT_SALAR RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|160863361|gb|ABX19984.1| hypothetical protein SARI_00030 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 208

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQL 162


>gi|156973272|ref|YP_001444179.1| hypothetical protein VIBHAR_00953 [Vibrio harveyi ATCC BAA-1116]
 gi|262828794|sp|A7MXM2|TRMN6_VIBHB RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|156524866|gb|ABU69952.1| hypothetical protein VIBHAR_00953 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 47  DGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103
               +++IG G G L  M      + ++  ++ +       K   +Q    +RL +   D
Sbjct: 42  PQNKILDIGTGTGLLALMCAQRFPSAQITALDIEITAIEAAKQNFAQSTWSDRLSLHHSD 101

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIG 130
            L+ + E  F      RII N PY   
Sbjct: 102 VLQFEPEHRFE-----RIICNPPYFNS 123


>gi|149540272|ref|XP_001517753.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 421

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISS- 91
           N+ +K+  +S    G  ++++ AG G  T   L+  G   V   E +      L+     
Sbjct: 216 NVTEKLRVASLPCAGEVLVDLYAGIGYFTLPFLVHAGVAFVHACEWNPHAVAALRRNLEL 275

Query: 92  -QHPNRLEIIQDDALKVDFEKFFN 114
               +R +I   D  K+D E   +
Sbjct: 276 NGVADRCQIHAGDNRKLDLEDRAD 299


>gi|108761687|ref|YP_634996.1| hypothetical protein MXAN_6881 [Myxococcus xanthus DK 1622]
 gi|108465567|gb|ABF90752.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 238

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 19/177 (10%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-- 96
           IA+        + +++  G G   + L  L   +V+  +  Q      +   +Q P    
Sbjct: 47  IAQLGAPGSVGSALDVCCGTGAAMRFLRPLARERVVGFDLSQGMLDEARQQLAQAPGTAA 106

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           LE IQ DAL + F+  F++ +      ++      RL+     A      +  +T     
Sbjct: 107 LEFIQGDALALPFDGAFDVVTSFGAFGHILEEDEPRLVKGIARALRPGGRFLFVT----- 161

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213
                  A   S       +  G+          + +  +  P V   +   +P   
Sbjct: 162 -------AHPPSKLRPGYWMAKGFNAAMR-----ARNALWNPPFVMYYLTFLVPRAR 206


>gi|85372907|ref|YP_456969.1| phospholipid N-methyltransferase [Erythrobacter litoralis HTCC2594]
 gi|84785990|gb|ABC62172.1| phospholipid N-methyltransferase [Erythrobacter litoralis HTCC2594]
          Length = 209

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 21/120 (17%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQ------NFLLDLN-----------ILKKIAESSGSL 46
           +N++ ++  +         + +GQ       FL                + K+       
Sbjct: 3   DNEASAIARLRDRIGQRASRTLGQWGVFFRGFLEHPRMVGSIIPSSRYTIDKMLAPVDWD 62

Query: 47  DGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                +E G G G     +L    G  +++ I+ +  F   L        +R   +   A
Sbjct: 63  RCDLFVEYGPGVGTFCLPVLERMKGTGRLVAIDTNPLFVDFLNRTIK--DSRFTAVLGSA 120


>gi|72160554|ref|YP_288211.1| hypothetical protein Tfu_0150 [Thermobifida fusca YX]
 gi|71914286|gb|AAZ54188.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 276

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G  V+EIG G G   + L   G  +V+ I+   +       +     +RL ++Q DA
Sbjct: 74  GRRVLEIGCGAGQCGRWLRAQGVAEVVGIDMSARQLQHSHRLDKATGHRLPVVQADA 130


>gi|325266949|ref|ZP_08133620.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Kingella
           denitrificans ATCC 33394]
 gi|324981690|gb|EGC17331.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Kingella
           denitrificans ATCC 33394]
          Length = 215

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD----QQFFPILKD 88
             I+ ++ +         V+E+G G G  T +L TL A  V   + D     +    L+ 
Sbjct: 63  PKIVARMIQGLSLTKTDRVLEVGTGSGYATAVLATL-AGSVRTFDTDGSQQARAKAALQQ 121

Query: 89  I 89
           +
Sbjct: 122 L 122


>gi|296116166|ref|ZP_06834784.1| dethiobiotin synthase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977272|gb|EFG84032.1| dethiobiotin synthase [Gluconacetobacter hansenii ATCC 23769]
          Length = 471

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
             + ++IA++  +     ++EIG G G LTQ L  L  A +++  +         +    
Sbjct: 31  RQLAQRIAQTCPTPGPQRILEIGCGTGFLTQHLRRLFPAAQIVATDIAPGMLHQTQAKFL 90

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
             P  L     DA      +  +++ P  +I +
Sbjct: 91  DDPA-LSCHVMDA------EQPDLTGPFDLICS 116


>gi|300088155|ref|YP_003758677.1| methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527888|gb|ADJ26356.1| Methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 276

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           ++ +A S+       V +IGAG G L++ LL   A++++ IE D +     +       N
Sbjct: 56  IEYLARSAELNCNSIVADIGAGAGILSK-LLGPHAKQIMAIEPDAKMRQTAEQHLRDAAN 114

Query: 96  RLEIIQDDA 104
            + II   A
Sbjct: 115 -VSIISGSA 122


>gi|302658633|ref|XP_003021018.1| filamentation protein (Rhf1), putative [Trichophyton verrucosum HKI
           0517]
 gi|291184893|gb|EFE40400.1| filamentation protein (Rhf1), putative [Trichophyton verrucosum HKI
           0517]
          Length = 1733

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 79/272 (29%), Gaps = 76/272 (27%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G +V++IG GPG     L+  G  +V  I+  Q+     K             + D  K
Sbjct: 45  AGSSVLDIGCGPGGPASRLIKAG-FQVTGIDISQKMVDFCKKSFPG-----TFHKADMTK 98

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL----LFQKEVGERI 162
            +  + F+    +  +    Y     ++F   S           T+      Q E     
Sbjct: 99  YEPSQQFDAIVSLFNLFQTSYTTTYSMVFKMASWLRPGGTLILGTIAAEDYIQDEAA-LC 157

Query: 163 TAQKNSPHYGRLSVLTGW--RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLE 220
           TA+K+            +     A  M  + P             + F+     +    +
Sbjct: 158 TARKH-----------QYIENYDAKFMGRVIP-------------VTFLTMSRWLNVVQQ 193

Query: 221 S--LKKITQEA------FGKR--------RKTLRQSLKRLGGENLLHQAGIETNLR---- 260
           +    ++          F  +        RK    +L+ L G   L         R    
Sbjct: 194 AGLFIQVVDLCDFEIKGFKHKENHLFITARKM---NLEPLFGPYPL------PTFRRRPH 244

Query: 261 ----------AENLSIEDFCRITNILTDNQDI 282
                     AE L+  +F  +   +  N+++
Sbjct: 245 LLSEGAWKPFAERLTRHEFDAVLKAVESNKEV 276


>gi|269128616|ref|YP_003301986.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Thermomonospora curvata DSM 43183]
 gi|268313574|gb|ACY99948.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Thermomonospora curvata DSM 43183]
          Length = 236

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           LD    + +  +     G  V+++ AG G  +      GAR V   +       + +  +
Sbjct: 35  LDRRWRRAVVAALDVRPGERVLDLAAGTGTSSIPFAEAGARTV-ACDFSFGMLTVGRRRT 93

Query: 91  SQHP--NRLEIIQDDALKVDFEK 111
            + P  +R   +  DAL++ F  
Sbjct: 94  GRLPEGSRPRFVAGDALRLPFAD 116


>gi|239630451|ref|ZP_04673482.1| SAM-dependent methyltransferase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526734|gb|EEQ65735.1| SAM-dependent methyltransferase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 274

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEK-DQQFFPIL-------KD 88
           IAE+     G  ++EIG G G+L+ +L      A  V  I+     +   L         
Sbjct: 34  IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSAGHVTGIDIASPDYGAPLTLGQAWNHL 93

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           ++    +RL +  +  L  D     N      ++A+  +   +      +
Sbjct: 94  LAGPLGDRLTVHFNTNLSDDLGPIANQHFDRVVLAHSLWYFASANALALL 143


>gi|198428082|ref|XP_002127404.1| PREDICTED: similar to PRMT3 protein [Ciona intestinalis]
          Length = 543

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQH 93
             I  +S       V+++G G G L+      GA+ V  ++  +   Q   I+++  +  
Sbjct: 257 DAIMLNSDRFKDKIVLDVGCGTGILSMFAAKAGAKHVYAVDMSEIAFQAMDIVRE--NDF 314

Query: 94  PNRLEIIQDDA 104
            N++ +I+   
Sbjct: 315 NNKITVIKGCI 325


>gi|191639528|ref|YP_001988694.1| SAM-dependent methyltransferase [Lactobacillus casei BL23]
 gi|190713830|emb|CAQ67836.1| SAM-dependent methyltransferase [Lactobacillus casei BL23]
 gi|327383627|gb|AEA55103.1| hypothetical protein LC2W_2774 [Lactobacillus casei LC2W]
          Length = 274

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEK-DQQFFPIL-------KD 88
           IAE+     G  ++EIG G G+L+ +L      A  V  I+     +   L         
Sbjct: 34  IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSAGHVTGIDIASPDYGAPLTLGQAWNHL 93

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           ++    +RL +  +  L  D     N      ++A+  +   +      +
Sbjct: 94  LAGPLGDRLTVHFNTNLSDDLGPIANQHFDRVVLAHSLWYFASANALALL 143


>gi|169828578|ref|YP_001698736.1| putative methyltransferase [Lysinibacillus sphaericus C3-41]
 gi|168993066|gb|ACA40606.1| Putative methyltransferase [Lysinibacillus sphaericus C3-41]
          Length = 251

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                TV +IG+G G L++ LL  G   VI +E +     + ++  S H +R + I+  A
Sbjct: 35  LKGEQTVADIGSGTGILSRQLLEKG-MNVIGVEPNDDMRKMAEESLSFH-SRFKSIKGTA 92

Query: 105 ----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--------WISADTWPPFWESLTL 152
               LK +      ++          + +  + +          W S D   P  +    
Sbjct: 93  EHTTLKGNSIDLVTVAQAFHWFDKKAFKMECQRILKQNANVALVWNSRDLTSPIIQENAA 152

Query: 153 LFQK 156
           + QK
Sbjct: 153 ICQK 156


>gi|161502253|ref|YP_001569365.1| hypothetical protein SARI_00281 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863600|gb|ABX20223.1| hypothetical protein SARI_00281 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 219

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHP--NRLE 98
           +   D   +++IG G G L  ML         V  +E D +     ++  +  P  +R+ 
Sbjct: 14  APVADVKRILDIGTGSGLLALMLAQRTDDNVPVDAVELDAEAAMQAQENVAHSPWAHRIT 73

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  DD  +    +         II+N PY 
Sbjct: 74  VHTDDIQRWAPRQTVRFD---LIISNPPYY 100


>gi|86739189|ref|YP_479589.1| UbiE/COQ5 methyltransferase [Frankia sp. CcI3]
 gi|86566051|gb|ABD09860.1| UbiE/COQ5 methyltransferase [Frankia sp. CcI3]
          Length = 265

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            L G  V+++GAG G  T++L+  GAR V+ +E        L+  S   P
Sbjct: 50 RPLRGADVLDVGAGTGIATRLLIGRGAR-VVPVEPGPTMLARLRQRSPGLP 99


>gi|328772625|gb|EGF82663.1| hypothetical protein BATDEDRAFT_9371 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 356

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 16/135 (11%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI------VIEKDQQFFPILKDISSQHPNR 96
           SG  DG+ ++++G G G+LT  L     +  +        ++D     IL     +    
Sbjct: 124 SGVKDGMRILDLGCGWGSLTLYLANKYPKSSVVGLSNSASQRDY----ILDQAKQRSLTN 179

Query: 97  LEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWISADTWPPFW-----ESL 150
           + I   D ++ + +  F+    I        Y      +  W+       F      +S+
Sbjct: 180 VTIHTADIVEFEMDAEFDRIFSIEMFEHMKNYQTLLAKVSKWLEPINGKLFIHVFAHKSM 239

Query: 151 TLLFQKEVGERITAQ 165
              F+ +      A+
Sbjct: 240 PYDFKTDEDNSWMAK 254


>gi|327478831|gb|AEA82141.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas stutzeri
           DSM 4166]
          Length = 393

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L+ I        G  ++++G G G L +        +V  I   ++   + ++  +    
Sbjct: 147 LRLICRKLRLKPGDRLLDVGCGWGGLARFAAREFGARVFGITLSREQLALARERVAAEGL 206

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
            +++++   D   +  ++ F+
Sbjct: 207 QDQVQLELMDYRDLPQDERFD 227


>gi|308068535|ref|YP_003870140.1| hypothetical protein PPE_01766 [Paenibacillus polymyxa E681]
 gi|305857814|gb|ADM69602.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 702

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 48  GITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           G  +++IG G G L  ++       K + ++        LK       +R ++I+ D L+
Sbjct: 436 GTRILDIGPGGGVLLDLIEQERPDAKPLGLDISVNVIEALKRKKQLERHRWDVIKGDVLR 495

Query: 107 VD 108
           ++
Sbjct: 496 LE 497


>gi|296418726|ref|XP_002838976.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634970|emb|CAZ83167.1| unnamed protein product [Tuber melanosporum]
          Length = 248

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             + +KIA+        T++++  G G    Q  L+   ++VI ++KDQ      +  + 
Sbjct: 71  EKVARKIADHVLGSPVETILDVFCGIGGNAIQFALSTSCKRVIAVDKDQTAIDCARHNAR 130

Query: 92  QHP--NRLEIIQDDALKV 107
            +   +++E +  D  ++
Sbjct: 131 IYGVLDKIEFVVGDVFQL 148


>gi|284166557|ref|YP_003404836.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284016212|gb|ADB62163.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 252

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISSQHP-------- 94
             ++G   +E GAG GN T  LL  GA +V  +  D+      L+ + S           
Sbjct: 14  RPIEGAVCLEAGAGVGNTTAGLLANGAARVYAVTDDRTHAETTLERVRSPTDDDGNDDPR 73

Query: 95  ---NRLEIIQDD 103
              NRL +++ D
Sbjct: 74  RARNRLAVLEAD 85


>gi|282849338|ref|ZP_06258723.1| methyltransferase, FkbM family [Veillonella parvula ATCC 17745]
 gi|282581042|gb|EFB86440.1| methyltransferase, FkbM family [Veillonella parvula ATCC 17745]
          Length = 276

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
                T+++IGAGPG+ T        + V  IE  +    +LK+ + +     + II++ 
Sbjct: 65  LNPDSTMLDIGAGPGSFTIP-FAQHIQSVTAIEPSKGMVAVLKENAKELNVENINIIEEL 123

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
              +  +   +    +  I+ + + +   +    +  + +   + ++    
Sbjct: 124 VQDLPQDGSSDFKFDLVTISLVLW-MFPDVWPRLLQMEQYSKGYCAIVSGI 173


>gi|240280978|gb|EER44481.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
          Length = 285

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            ++   V+E+G+G G L+   L  LGAR+V   ++D      +KD + ++ 
Sbjct: 169 LIEEKNVVELGSGTGLLSMYCLKCLGARRVTATDRDPALISSIKDCAIRND 219


>gi|225850628|ref|YP_002730862.1| tRNA methyltransferase complex GCD14 subunit [Persephonella marina
           EX-H1]
 gi|225645777|gb|ACO03963.1| tRNA methyltransferase complex GCD14 subunit [Persephonella marina
           EX-H1]
          Length = 252

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 13/137 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKD--ISSQHP 94
           I    G  DG+ V+E G G G LT ++      + K+   EK++++   +K+    +   
Sbjct: 86  ITLKLGITDGMRVLESGIGSGALTIVMANAVKPSGKIYGYEKEEKYIDTVKENLRLAGME 145

Query: 95  NRLEIIQDDALKVDFEKFF-----NISSPIRIIANLPYNI--GTRLLFNWISADTWPPFW 147
           + + +   D  +   E +F     ++  P   + N+   +  G+ + F   + +      
Sbjct: 146 DYVSLFHHDLSEKLPEDYFDAAFIDVREPWLYMENVKSALKRGSPIGFLLPTTNQVSRIL 205

Query: 148 ESL--TLLFQKEVGERI 162
           ESL      Q EV E +
Sbjct: 206 ESLSYHGFIQPEVKEIL 222


>gi|289209001|ref|YP_003461067.1| Cyclopropane-fatty-acyl-phospholipid synthase [Thioalkalivibrio sp.
           K90mix]
 gi|288944632|gb|ADC72331.1| Cyclopropane-fatty-acyl-phospholipid synthase [Thioalkalivibrio sp.
           K90mix]
          Length = 345

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 4/133 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +G  DG  V+E+G G G+L+  +     GAR   V     Q   I     +     LE++
Sbjct: 112 AGIADGQRVLELGCGWGSLSLWMAEQYPGARITAVSNSSTQRAFIEARRDALGLANLEVL 171

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
             D       +          I    +      L   I+    P     + +   +E   
Sbjct: 172 TADMNTFAPPE--PGFDRAVSIEMFEHMRNWPELLRRIAGWLNPGGRFFMHVFAHREHAY 229

Query: 161 RITAQKNSPHYGR 173
              ++      GR
Sbjct: 230 VFESEGEHDWMGR 242


>gi|330818719|ref|YP_004362424.1| cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           gladioli BSR3]
 gi|327371112|gb|AEA62468.1| cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           gladioli BSR3]
          Length = 404

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           ++I ++ G   G+ V+EIG G G   +    LG R
Sbjct: 178 QRIVDTLGLRAGMRVLEIGCGWGGFAEHAARLGIR 212


>gi|297172084|gb|ADI23066.1| N6-adenine-specific methylase [uncultured gamma proteobacterium
           HF0770_07M15]
          Length = 190

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
             TV+E+ AG G L+   L+ GA   + +EK  +    ++  +      +EI    AL+ 
Sbjct: 42  DCTVLELFAGSGALSLECLSRGAASAVCVEKSSKHASYIRRNTKALETNIEICVQCALR- 100

Query: 108 DFEKFFNISSPIRIIANLP 126
             ++   ++     I   P
Sbjct: 101 SVKQLAEVNRTFDFICADP 119


>gi|296333297|ref|ZP_06875750.1| ribosomal protein L11 methyltransferase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675198|ref|YP_003866870.1| ribosomal protein L11 methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149495|gb|EFG90391.1| ribosomal protein L11 methyltransferase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413442|gb|ADM38561.1| ribosomal protein L11 methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 311

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           L++I        G  VI++G G G L+     L A  V   + D       +
Sbjct: 169 LERIV-----QKGDKVIDVGTGSGILSIAAAMLEAESVHAYDLDPVAVESAR 215


>gi|239980269|ref|ZP_04702793.1| putative methyltransferase [Streptomyces albus J1074]
 gi|291452132|ref|ZP_06591522.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291355081|gb|EFE81983.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 285

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP------NRL 97
             L G+ V +IGAG G  T  L   GA  V+ +E  +     L+      P      N L
Sbjct: 43  RPLAGVRVADIGAGTGIATAQLHARGAH-VLAVEPGEGMAAELRRSLPGTPLVRGDGNAL 101

Query: 98  EIIQDDALKVDFEKFFNISSP 118
            +    A  V F + F+ + P
Sbjct: 102 PLADGAADLVTFAQSFHWTDP 122


>gi|115372595|ref|ZP_01459902.1| formamidopyrimidine-DNA glycosylase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823827|ref|YP_003956185.1| DNA glycosylase [Stigmatella aurantiaca DW4/3-1]
 gi|115370316|gb|EAU69244.1| formamidopyrimidine-DNA glycosylase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396899|gb|ADO74358.1| DNA glycosylase [Stigmatella aurantiaca DW4/3-1]
          Length = 281

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 239 QSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNIL 276
             L  +     L +AG+    + + L+ ED+ R+   +
Sbjct: 167 AGLGNIHAAEALFRAGLHPARKPDTLTPEDWKRLARAI 204


>gi|82701356|ref|YP_410922.1| methionine biosynthesis MetW [Nitrosospira multiformis ATCC 25196]
 gi|82409421|gb|ABB73530.1| Methionine biosynthesis MetW [Nitrosospira multiformis ATCC 25196]
          Length = 206

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 21  PKKYMGQNFLLDLNILK----KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            KK +G N    LN  +     I  ++    G  V+++G G G+L + L      +   +
Sbjct: 1   MKKSLGMN--SSLNAARPDFALI--AAWVKPGAKVLDLGCGDGSLIRFLRDSRGSRGYGV 56

Query: 77  EKDQQFFPILKDISSQHPNRLEIIQDD 103
           E D        ++ +   N + +IQ D
Sbjct: 57  EIDD------ANVLACFNNGVNVIQSD 77


>gi|70726306|ref|YP_253220.1| hypothetical protein SH1305 [Staphylococcus haemolyticus JCSC1435]
 gi|68447030|dbj|BAE04614.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 211

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 4   NNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           +NK  +L+       +          ++D   L+ I +         ++EIG   G  + 
Sbjct: 16  DNKIETLREYAEQNAVP---------IVDRLSLEMIKQLIRIHRAKNILEIGTAIGYSSM 66

Query: 64  MLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFE 110
              ++     +  IE+D++     K       + +++ +I+ +AL+   E
Sbjct: 67  QFASVSNDIHITTIERDEEMITQAKSNFETYGYSSQIRLIEGNALEQYNE 116


>gi|15603936|ref|NP_220451.1| 16S rRNA methyltransferase GidB [Rickettsia prowazekii str. Madrid
           E]
 gi|6225446|sp|Q9ZE89|RSMG_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase G;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase; Short=16S rRNA m7G methyltransferase
 gi|3860627|emb|CAA14528.1| GLUCOSE INHIBITED DIVISION PROTEIN B (gidB) [Rickettsia prowazekii]
 gi|292571654|gb|ADE29569.1| Putative S-adenosylmethionine-dependent methyltransferase GidB
           [Rickettsia prowazekii Rp22]
          Length = 191

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 13/131 (9%)

Query: 30  LLDLNIL-----KKIAESSGS-----LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           L+  N +     + I +S           I +I+IG+G G    +L   G  KV +IE D
Sbjct: 27  LISDNTIPNFWQRHILDSLQLMQYISNKEIHLIDIGSGAGFPGIVLSIAGVTKVSLIEAD 86

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR---IIANLPYNIGTRLLFN 136
            +    L   S    N ++II     K++ +              I N   NI  R  F 
Sbjct: 87  LRKCIFLAKASKISNNSIQIINQRIEKIEIDCSILTCRAFSNLNTIFNYTQNISVREKFL 146

Query: 137 WISADTWPPFW 147
            +   ++    
Sbjct: 147 LLKGKSYLTEI 157


>gi|313771258|gb|EFS37224.1| methyltransferase domain protein [Propionibacterium acnes HL074PA1]
 gi|313811849|gb|EFS49563.1| methyltransferase domain protein [Propionibacterium acnes HL083PA1]
 gi|313832037|gb|EFS69751.1| methyltransferase domain protein [Propionibacterium acnes HL007PA1]
 gi|313832844|gb|EFS70558.1| methyltransferase domain protein [Propionibacterium acnes HL056PA1]
 gi|313839704|gb|EFS77418.1| methyltransferase domain protein [Propionibacterium acnes HL086PA1]
 gi|314975277|gb|EFT19372.1| methyltransferase domain protein [Propionibacterium acnes HL053PA1]
 gi|314977692|gb|EFT21787.1| methyltransferase domain protein [Propionibacterium acnes HL045PA1]
 gi|314985333|gb|EFT29425.1| methyltransferase domain protein [Propionibacterium acnes HL005PA1]
 gi|315097083|gb|EFT69059.1| methyltransferase domain protein [Propionibacterium acnes HL038PA1]
 gi|327332580|gb|EGE74315.1| methyltransferase domain protein [Propionibacterium acnes HL096PA2]
 gi|327446641|gb|EGE93295.1| methyltransferase domain protein [Propionibacterium acnes HL043PA2]
 gi|327448916|gb|EGE95570.1| methyltransferase domain protein [Propionibacterium acnes HL043PA1]
 gi|328759780|gb|EGF73376.1| methyltransferase domain protein [Propionibacterium acnes HL099PA1]
          Length = 289

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           L +IA  +     G +V+++G G G     L   G R V V+++ +    +L+  + +  
Sbjct: 72  LAQIAAVTEIVEPGSSVLDVGGGTGRFAIPLAQRGCR-VTVLDRSEDMLSVLESSAEEKD 130

Query: 95  NRLEIIQD 102
             ++++  
Sbjct: 131 VEIDVVHQ 138


>gi|313764941|gb|EFS36305.1| methyltransferase domain protein [Propionibacterium acnes HL013PA1]
 gi|313792488|gb|EFS40574.1| methyltransferase domain protein [Propionibacterium acnes HL110PA1]
 gi|313803489|gb|EFS44671.1| methyltransferase domain protein [Propionibacterium acnes HL110PA2]
 gi|313806938|gb|EFS45436.1| methyltransferase domain protein [Propionibacterium acnes HL087PA2]
 gi|313814142|gb|EFS51856.1| methyltransferase domain protein [Propionibacterium acnes HL025PA1]
 gi|313815497|gb|EFS53211.1| methyltransferase domain protein [Propionibacterium acnes HL059PA1]
 gi|313817721|gb|EFS55435.1| methyltransferase domain protein [Propionibacterium acnes HL046PA2]
 gi|313821452|gb|EFS59166.1| methyltransferase domain protein [Propionibacterium acnes HL036PA1]
 gi|313824603|gb|EFS62317.1| methyltransferase domain protein [Propionibacterium acnes HL036PA2]
 gi|313826274|gb|EFS63988.1| methyltransferase domain protein [Propionibacterium acnes HL063PA1]
 gi|313829064|gb|EFS66778.1| methyltransferase domain protein [Propionibacterium acnes HL063PA2]
 gi|314916293|gb|EFS80124.1| methyltransferase domain protein [Propionibacterium acnes HL005PA4]
 gi|314917563|gb|EFS81394.1| methyltransferase domain protein [Propionibacterium acnes HL050PA1]
 gi|314921896|gb|EFS85727.1| methyltransferase domain protein [Propionibacterium acnes HL050PA3]
 gi|314926494|gb|EFS90325.1| methyltransferase domain protein [Propionibacterium acnes HL036PA3]
 gi|314930839|gb|EFS94670.1| methyltransferase domain protein [Propionibacterium acnes HL067PA1]
 gi|314955234|gb|EFS99639.1| methyltransferase domain protein [Propionibacterium acnes HL027PA1]
 gi|314959237|gb|EFT03339.1| methyltransferase domain protein [Propionibacterium acnes HL002PA1]
 gi|314961409|gb|EFT05510.1| methyltransferase domain protein [Propionibacterium acnes HL002PA2]
 gi|314964199|gb|EFT08299.1| methyltransferase domain protein [Propionibacterium acnes HL082PA1]
 gi|314969311|gb|EFT13409.1| methyltransferase domain protein [Propionibacterium acnes HL037PA1]
 gi|314980175|gb|EFT24269.1| methyltransferase domain protein [Propionibacterium acnes HL072PA2]
 gi|314987030|gb|EFT31122.1| methyltransferase domain protein [Propionibacterium acnes HL005PA2]
 gi|314990476|gb|EFT34567.1| methyltransferase domain protein [Propionibacterium acnes HL005PA3]
 gi|315078893|gb|EFT50911.1| methyltransferase domain protein [Propionibacterium acnes HL053PA2]
 gi|315081662|gb|EFT53638.1| methyltransferase domain protein [Propionibacterium acnes HL078PA1]
 gi|315083164|gb|EFT55140.1| methyltransferase domain protein [Propionibacterium acnes HL027PA2]
 gi|315086691|gb|EFT58667.1| methyltransferase domain protein [Propionibacterium acnes HL002PA3]
 gi|315088095|gb|EFT60071.1| methyltransferase domain protein [Propionibacterium acnes HL072PA1]
 gi|315099689|gb|EFT71665.1| methyltransferase domain protein [Propionibacterium acnes HL059PA2]
 gi|315102078|gb|EFT74054.1| methyltransferase domain protein [Propionibacterium acnes HL046PA1]
 gi|315107642|gb|EFT79618.1| methyltransferase domain protein [Propionibacterium acnes HL030PA1]
 gi|315110051|gb|EFT82027.1| methyltransferase domain protein [Propionibacterium acnes HL030PA2]
 gi|327333754|gb|EGE75471.1| methyltransferase domain protein [Propionibacterium acnes HL096PA3]
 gi|327444783|gb|EGE91437.1| methyltransferase domain protein [Propionibacterium acnes HL013PA2]
 gi|327454329|gb|EGF00984.1| methyltransferase domain protein [Propionibacterium acnes HL087PA3]
 gi|327456394|gb|EGF03049.1| methyltransferase domain protein [Propionibacterium acnes HL083PA2]
 gi|327457334|gb|EGF03989.1| methyltransferase domain protein [Propionibacterium acnes HL092PA1]
 gi|328756089|gb|EGF69705.1| methyltransferase domain protein [Propionibacterium acnes HL087PA1]
 gi|328757894|gb|EGF71510.1| methyltransferase domain protein [Propionibacterium acnes HL020PA1]
 gi|328758467|gb|EGF72083.1| methyltransferase domain protein [Propionibacterium acnes HL025PA2]
 gi|332674473|gb|AEE71289.1| hypothetical protein PAZ_c00780 [Propionibacterium acnes 266]
          Length = 289

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           L +IA  +     G +V+++G G G     L   G R V V+++ +    +L+  + +  
Sbjct: 72  LAQIAAVTEIVEPGSSVLDVGGGTGRFAIPLAQRGCR-VTVLDRSEDMLSVLESSAEEKD 130

Query: 95  NRLEIIQD 102
             ++++  
Sbjct: 131 VEIDVVHQ 138


>gi|314933751|ref|ZP_07841116.1| ribosomal protein L11 methyltransferase [Staphylococcus caprae C87]
 gi|313653901|gb|EFS17658.1| ribosomal protein L11 methyltransferase [Staphylococcus caprae C87]
          Length = 312

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                ++I++G G G L+     +G +++  ++ D+    + K+   ++   + +E +  
Sbjct: 171 VQTTDSIIDVGTGSGILSIASHLVGVKRIKALDIDEMAVNVAKENFKKNRCEDAIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EK+
Sbjct: 231 NLLKEEKEKY 240


>gi|307297083|ref|ZP_07576898.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Sphingobium chlorophenolicum L-1]
 gi|306877471|gb|EFN08700.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Sphingobium chlorophenolicum L-1]
          Length = 402

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 31  LDLNILKKIAESS-----GSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQ-FF 83
            D  I K+ A +          G T+ +IGAG G++  + LL   +   I  E D +   
Sbjct: 231 HDGQIAKRPARALTLSALAPRPGETLWDIGAGSGSVAIEWLLAHPSTAAIAFEADPERAA 290

Query: 84  PILKDISSQHPNRLEIIQD 102
               +  S   +RL +I+ 
Sbjct: 291 RARANALSLGADRLTVIEG 309


>gi|296446616|ref|ZP_06888557.1| Methyltransferase type 11 [Methylosinus trichosporium OB3b]
 gi|296255844|gb|EFH02930.1| Methyltransferase type 11 [Methylosinus trichosporium OB3b]
          Length = 242

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ 92
           KK+  +        V +IGAG G     +       KV  ++ +      L + + +
Sbjct: 79  KKVIAALRLSRNERVADIGAGTGYFAAKIAKRIPHGKVYAVDVEPDMVTYLGERAQR 135


>gi|326790487|ref|YP_004308308.1| spermidine synthase [Clostridium lentocellum DSM 5427]
 gi|326541251|gb|ADZ83110.1| spermidine synthase [Clostridium lentocellum DSM 5427]
          Length = 285

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPI------LKDISSQ 92
              + + +   V+ IG G G   + +L     +KV ++E D++   +      L      
Sbjct: 69  VAMAVNPEVKRVLIIGGGDGGTAREILRYKTIKKVDLVEIDERVVRLCQQYLPLTAAPFD 128

Query: 93  HPNRLEIIQDDALKV 107
           H NRL +   D L  
Sbjct: 129 HDNRLVLHFQDGLDF 143


>gi|295108645|emb|CBL22598.1| Predicted O-methyltransferase [Ruminococcus obeum A2-162]
          Length = 250

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKD--ISSQHPNRLE 98
           +      TV+++G G G +  +LL    +   +  +E  ++   + +     +   + ++
Sbjct: 45  ANIRKNETVLDMGTGTGII-PILLKSKGKGGHLTGLEIQEECADMARRSVRYNSLESDID 103

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           II  D  +      F  +S   + +N PY IG
Sbjct: 104 IICGDIKEA--AATFGAASFDVVTSNPPYMIG 133


>gi|289424558|ref|ZP_06426341.1| methyltransferase domain protein [Propionibacterium acnes SK187]
 gi|289427513|ref|ZP_06429226.1| methyltransferase domain protein [Propionibacterium acnes J165]
 gi|289155255|gb|EFD03937.1| methyltransferase domain protein [Propionibacterium acnes SK187]
 gi|289159443|gb|EFD07634.1| methyltransferase domain protein [Propionibacterium acnes J165]
          Length = 265

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           L +IA  +     G +V+++G G G     L   G R V V+++ +    +L+  + +  
Sbjct: 48  LAQIAAVTEIVEPGSSVLDVGGGTGRFAIPLAQRGCR-VTVLDRSEDMLSVLESSAEEKD 106

Query: 95  NRLEIIQD 102
             ++++  
Sbjct: 107 VEIDVVHQ 114


>gi|289192702|ref|YP_003458643.1| methylase [Methanocaldococcus sp. FS406-22]
 gi|288939152|gb|ADC69907.1| methylase [Methanocaldococcus sp. FS406-22]
          Length = 197

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
               V+EIG G G ++      GA+KV+ ++ +     + K+ +       ++   D L 
Sbjct: 34  KNKEVLEIGIGTGLISIACAKKGAKKVVGVDINPYAVKLAKENA-------KLNNVDVLF 86

Query: 107 VDFEKFFNISSPIRIIA-NLPYNIGTR 132
            + + F N++    II  N PY   + 
Sbjct: 87  FESDLFENVNGKFDIILFNPPYLPTSE 113


>gi|290957470|ref|YP_003488652.1| methyltransferase [Streptomyces scabiei 87.22]
 gi|260646996|emb|CBG70095.1| putative methyltransferase [Streptomyces scabiei 87.22]
          Length = 252

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 11/111 (9%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNR 96
            + E+        V+++  G G++T  L     + V   ++ D     I +      P R
Sbjct: 36  DMVEAFA-GPEPRVLDLACGTGSITSRLFARFPKAVSTGVDLDPALLTIAEGTFEGDP-R 93

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           +  +  D          +     R+  +    + T    +W+ ++     +
Sbjct: 94  VTFVTAD--------LTDPDWTARLPYDAYDAVLTATALHWLHSEPLAALY 136


>gi|302560459|ref|ZP_07312801.1| UbiE/COQ5 family methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302478077|gb|EFL41170.1| UbiE/COQ5 family methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 284

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD---QQFFPILKDISSQHPNRL 97
           +++G   G  V+++G G G  T ++    A    V+  D          +D  ++    +
Sbjct: 41  DAAGIAAGDRVLDVGCGTGQ-TTLIAARRAYDGSVLGVDLSAPMLERARRDAVAEGVGNV 99

Query: 98  EIIQDDA 104
              Q DA
Sbjct: 100 GFEQGDA 106


>gi|229173463|ref|ZP_04301007.1| hypothetical protein bcere0006_25640 [Bacillus cereus MM3]
 gi|228610157|gb|EEK67435.1| hypothetical protein bcere0006_25640 [Bacillus cereus MM3]
          Length = 247

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
              +++E+GAG G   + +  L  +   V     +  P L   + +H  N + I   D  
Sbjct: 41  PFQSMLELGAGNGGFARAMSKLRVKMTTV-----ELVPELVMFAKEHSTNDIAIYCADFY 95

Query: 106 KVDFEKFFNI 115
           K++FE+ F++
Sbjct: 96  KINFEEKFDV 105


>gi|295129604|ref|YP_003580267.1| methyltransferase domain protein [Propionibacterium acnes SK137]
 gi|291376552|gb|ADE00407.1| methyltransferase domain protein [Propionibacterium acnes SK137]
          Length = 265

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           L +IA  +     G +V+++G G G     L   G R V V+++ +    +L+  + +  
Sbjct: 48  LAQIAAVTEIVEPGSSVLDVGGGTGRFAIPLAQRGCR-VTVLDRSEDMLSVLESSAEEKD 106

Query: 95  NRLEIIQD 102
             ++++  
Sbjct: 107 VEIDVVHQ 114


>gi|50841566|ref|YP_054793.1| hypothetical protein PPA0075 [Propionibacterium acnes KPA171202]
 gi|50839168|gb|AAT81835.1| hypothetical protein PPA0075 [Propionibacterium acnes KPA171202]
          Length = 270

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           L +IA  +     G +V+++G G G     L   G R V V+++ +    +L+  + +  
Sbjct: 53  LAQIAAVTEIVEPGSSVLDVGGGTGRFAIPLAQRGCR-VTVLDRSEDMLSVLESSAEEKD 111

Query: 95  NRLEIIQD 102
             ++++  
Sbjct: 112 VEIDVVHQ 119


>gi|172056334|ref|YP_001812794.1| histidine kinase [Exiguobacterium sibiricum 255-15]
 gi|171988855|gb|ACB59777.1| histidine kinase [Exiguobacterium sibiricum 255-15]
          Length = 188

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             + + +A+ + +     +IE+GAG G +TQ LL     +  
Sbjct: 22 SPRLAQMMAQRAVADHPDVIIEVGAGDGAITQALLRARHPETT 64


>gi|326533662|dbj|BAK05362.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 256

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 26/144 (18%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
              + ++   LDG  ++E+G+G G L   L       +   + D       KDI     +
Sbjct: 79  ADWLVKNPSILDGQRILELGSGTGALAIFLQKTFGVDITTSDYDD------KDIGENIAH 132

Query: 96  RLEIIQDDAL----KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
              +   D L        + F  +     I+      I + +    +    +P    +L+
Sbjct: 133 NCRVNNLDVLPHIRHTWGDPFPILRPDWNIV------IASDI---LLYVKQYPNLITTLS 183

Query: 152 LLF-------QKEVGERITAQKNS 168
            L        QK V   IT +  +
Sbjct: 184 FLLKESDLNGQKGVCTNITTKAGT 207


>gi|321441971|gb|ADW85400.1| arg methyltransferase [Argyrotaenia alisellana]
          Length = 244

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLDDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|306818256|ref|ZP_07451986.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           mulieris ATCC 35239]
 gi|304648995|gb|EFM46290.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           mulieris ATCC 35239]
          Length = 498

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGAR-------KVI 74
            +GQ F   +   + IA+ +      T  V++ GAG G LT  L+    +       +V+
Sbjct: 28  KLGQYF-TPVTTAQLIAKMAELHQSGTIRVLDPGAGSGILTAALVNRILKETTSLKVEVL 86

Query: 75  VIEKDQQFFPILKDISSQHPN------RLEIIQDDAL---KVDFEKFFNISSPIRIIANL 125
            IE D Q    L+   +   N      +   +  D +                  +I N 
Sbjct: 87  AIETDTQLIRHLETTLNACINAGHGRVKASWVNADFILDSTGLNHSLNLEKKFDLVIENP 146

Query: 126 PY 127
           PY
Sbjct: 147 PY 148


>gi|299769489|ref|YP_003731515.1| ribosomal protein L11 methyltransferase [Acinetobacter sp. DR1]
 gi|298699577|gb|ADI90142.1| ribosomal protein L11 methyltransferase [Acinetobacter sp. DR1]
          Length = 301

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 19/142 (13%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
               VI+ G G G L    L LGA+KV   + D Q   +L    +   N +     D L 
Sbjct: 159 KDKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQ--AVLATKQNAELNGVL----DGLY 212

Query: 107 VDFEKFFNISSPIRIIANL-------PYNIGTRLLFNWISADTWPPFWESL------TLL 153
           V   + F+     +    L       P  +      N I ++        +         
Sbjct: 213 VGLPEEFDQEFKPQQADVLVANILAGPLMVLAPEFANLIKSEGEFALAGVIEEQVADVSG 272

Query: 154 FQKEVGERITAQKNSPHYGRLS 175
              E  + +  +K   ++ R+S
Sbjct: 273 VYSEFFDILDVEKREENWCRIS 294


>gi|319761315|ref|YP_004125252.1| hypothetical protein Alide_0595 [Alicycliphilus denitrificans BC]
 gi|317115876|gb|ADU98364.1| protein of unknown function DUF185 [Alicycliphilus denitrificans
           BC]
          Length = 361

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL---GARKVIVIEKDQQFFPILKDISS 91
           +  ++ E+  +     V E GAG G L   LL       R+  +++         ++  +
Sbjct: 72  LAAQVREALDATGTDEVWEFGAGSGALAGQLLEALGERVRRYTIVDLSGSLRARQQERLA 131

Query: 92  QHPNRLE 98
            H  R+ 
Sbjct: 132 AHAGRVH 138


>gi|258593850|emb|CBE70191.1| Methyltransferase type 11 [NC10 bacterium 'Dutch sediment']
          Length = 268

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 20/53 (37%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          + +++ ++        V+E   G G   Q++L         +E D      ++
Sbjct: 39 LTRRMLDALTIGPTDRVVEFAPGLGVTAQLVLAKSPSVYTAVEADDAAAKRVQ 91


>gi|307727147|ref|YP_003910360.1| protein-L-isoaspartate O-methyltransferase [Burkholderia sp.
           CCGE1003]
 gi|307587672|gb|ADN61069.1| protein-L-isoaspartate O-methyltransferase [Burkholderia sp.
           CCGE1003]
          Length = 303

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 15/168 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E++       V+++G G G     +    A  V  IE+  +     ++I ++
Sbjct: 64  PAIVATMIEAADLSPADVVLDVGTGSGYA-AAVAAALAAHVHSIERHAELVATAREILAR 122

Query: 93  HPNR-LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
              R + +   D            +    IIA         +    ++            
Sbjct: 123 LEIRNVTVYLGDG----TAGLAEHAPYDAIIAAAGGPHIPEIWRKQLAVGGRIVMPVGRD 178

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSP 199
             +Q+ V            Y   S+      + + +  +    + P+P
Sbjct: 179 RHYQRLVKLVRC---GEDDYQTCSL-----GEVSFVPLVGADAW-PAP 217


>gi|228947197|ref|ZP_04109491.1| Methyltransferase type 11 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228812444|gb|EEM58771.1| Methyltransferase type 11 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 239

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G  V+EIG G G     +      KV  +EK++      KD  S     +++I+  A
Sbjct: 38  GANVLEIGCGTGKTAAYMTKECGYKVTAVEKNEIMIQKAKDRWSSEGIDIQLIEGKA 94


>gi|227874931|ref|ZP_03993083.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus mulieris ATCC 35243]
 gi|227844508|gb|EEJ54665.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus mulieris ATCC 35243]
          Length = 498

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGIT--VIEIGAGPGNLTQMLLTLGAR-------KVI 74
            +GQ F   +   + IA+ +      T  V++ GAG G LT  L+    +       +V+
Sbjct: 28  KLGQYF-TPVTTAQLIAKMAELHQSGTIRVLDPGAGSGILTAALVNRILKETTSLKVEVL 86

Query: 75  VIEKDQQFFPILKDISSQHPN------RLEIIQDDAL---KVDFEKFFNISSPIRIIANL 125
            IE D Q    L+   +   N      +   +  D +                  +I N 
Sbjct: 87  AIETDTQLIRHLETTLNACINAGHGRVKASWVNADFILDSTGLNHSLNLEKKFDLVIENP 146

Query: 126 PY 127
           PY
Sbjct: 147 PY 148


>gi|308234563|ref|ZP_07665300.1| putative methyltransferase [Atopobium vaginae DSM 15829]
 gi|328944161|ref|ZP_08241626.1| methyltransferase [Atopobium vaginae DSM 15829]
 gi|327492130|gb|EGF23904.1| methyltransferase [Atopobium vaginae DSM 15829]
          Length = 198

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDAL 105
           V++  AG G L   L++ GA  +  IEKD+  F IL+  +      PN    +  D +
Sbjct: 50  VLDAFAGSGALGFELMSQGAAYLASIEKDRNAFKILQTNAQNLGCQPNTFTALYGDCM 107


>gi|254172001|ref|ZP_04878677.1| methylase, putative [Thermococcus sp. AM4]
 gi|214033897|gb|EEB74723.1| methylase, putative [Thermococcus sp. AM4]
          Length = 193

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 12/127 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---------IS 90
           AE+     G   ++IG G G +  +L+   A+ V+ ++ + +   + +          + 
Sbjct: 26  AETVDVKPGEIALDIGTGTGII-ALLMARKAKHVLGVDVNPKAIELARKNALLNGIENVK 84

Query: 91  SQHPNRLEIIQD--DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            +  +  E ++   D +  +             +A +    G  ++  +I          
Sbjct: 85  FRLSDLFENVEGEFDVVTFNAPYLPGEPEEPIDLALVGGETGREVIDRFIREVPDYLTEN 144

Query: 149 SLTLLFQ 155
               L Q
Sbjct: 145 GRVYLVQ 151


>gi|222529538|ref|YP_002573420.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|254782825|sp|B9MJY9|PRMA_ANATD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|222456385|gb|ACM60647.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 304

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 35/68 (51%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G+ V+++G G G L        AR+V+ ++ D+    + ++ +  +   +EI ++D 
Sbjct: 166 VKPGMDVLDVGTGSGILAIAAKKFLARRVLAVDIDEVAVKVAEENARLNGVEIEIKKNDL 225

Query: 105 LKVDFEKF 112
           ++   EKF
Sbjct: 226 VEGIEEKF 233


>gi|187777144|ref|ZP_02993617.1| hypothetical protein CLOSPO_00689 [Clostridium sporogenes ATCC
           15579]
 gi|187774072|gb|EDU37874.1| hypothetical protein CLOSPO_00689 [Clostridium sporogenes ATCC
           15579]
          Length = 187

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI 89
              + +++  +    +   ++E G+G G  T+ L+        +IV EK+Q+F   L + 
Sbjct: 24  SQKLAEEMVRNVDFQNAKCIVEYGSGTGVFTEKLIAKKKEDTLLIVFEKNQEFCNNLLNN 83

Query: 90  SSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIANLPY-NIGTRLLFNWISADTWPPFW 147
             ++   ++II D A K+ +  K FNIS    I++ LP+ ++   +    ++        
Sbjct: 84  Y-KYKKNVKIINDGAEKIKEHLKNFNISQADYIVSGLPFASLPKNISDRILNNTKEVLNV 142

Query: 148 ESLTLLFQKEVGERITAQK 166
           E   + FQ  + ++   + 
Sbjct: 143 EGEFITFQYSLVKKGLFKS 161


>gi|167900770|ref|ZP_02487975.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei NCTC 13177]
          Length = 469

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE  G+ DG+ V++  A PG  T  +L L   +V+ +E D    P + +  ++     ++
Sbjct: 269 AEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIDENLARLSLTADV 328

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-----FNWISADTWPPFW 147
              DA   D  ++ +     R++A++P +  + ++       W+      P  
Sbjct: 329 RVGDA--ADPAQWHDGRPFDRVLADVPCS-ASGIVRRHPDIRWLRRAADIPAL 378


>gi|90581427|ref|ZP_01237222.1| hypothetical protein VAS14_21892 [Vibrio angustum S14]
 gi|90437404|gb|EAS62600.1| hypothetical protein VAS14_21892 [Vibrio angustum S14]
          Length = 201

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFN 114
           AG G L+   L+ GA  V ++E D++    L +++ +       ++  D+L    ++   
Sbjct: 70  AGSGGLSFEALSRGAESVTMLELDKKAANQLEQNLKTVGAKNATVVNGDSLTFLSQQ--G 127

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
            +  +  I         + +   +  + W      + +  +KE+G  IT      H 
Sbjct: 128 RAHDLVFIDPPFRKDLIQDVIAALENNGWLAPHAMIYIEAEKELGNLITPSHWHLHR 184


>gi|90420402|ref|ZP_01228309.1| posibble methylase involved in ubiquinone/menaquinone biosynthesis
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335130|gb|EAS48883.1| posibble methylase involved in ubiquinone/menaquinone biosynthesis
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 241

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           +V++IG G G L + L+  G     V   D     I     S    R E+   +AL  D 
Sbjct: 35  SVLDIGCGRGALARSLVKRG---FAVTGIDPSEAAIAAARDSVPEARFEVAAAEALPFDD 91

Query: 110 EKF 112
             F
Sbjct: 92  ADF 94


>gi|37525988|ref|NP_929332.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785418|emb|CAE14364.1| Protein methyltranferase HemK (Protein-glutamine
           N-methyltransferase) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 282

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 50  TVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            ++++G G G +   +       +V  ++ +         ++  +  +L+I   D L  +
Sbjct: 112 RILDLGTGTGAIALAIASERPDCRVTGVDINPDAV----MLAQGNAEKLKIQNVDFLLSN 167

Query: 109 FEKFFNISSPIRIIANLPY 127
           +    N      I++N PY
Sbjct: 168 WFFSLNNQQFGMIVSNPPY 186


>gi|330823189|ref|YP_004386492.1| hypothetical protein Alide2_0560 [Alicycliphilus denitrificans
           K601]
 gi|329308561|gb|AEB82976.1| protein of unknown function DUF185 [Alicycliphilus denitrificans
           K601]
          Length = 361

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL---GARKVIVIEKDQQFFPILKDISS 91
           +  ++ E+  +     V E GAG G L   LL       R+  +++         ++  +
Sbjct: 72  LAAQVREALDATGTDEVWEFGAGSGALAGQLLEALGERVRRYTIVDLSGSLRARQQERLA 131

Query: 92  QHPNRLE 98
            H  R+ 
Sbjct: 132 AHAGRVH 138


>gi|326486416|gb|ADZ76245.1| hypothetical protein HS10.06 [Campylobacter jejuni subsp. jejuni]
          Length = 267

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 3  MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGP 58
          +N K      +  HY   P             +L+K+             + ++E+GAG 
Sbjct: 9  INMKQGDFTEVAKHYHNRPAYS--------PFLLEKLVACINDKNKNLKDLNIVEVGAGT 60

Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
          G LT+ML  +   ++  +E +       +  +    N
Sbjct: 61 GKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSN 97


>gi|326486330|gb|ADZ76163.1| hypothetical protein HS3/13/50.06 [Campylobacter jejuni subsp.
          jejuni]
 gi|326486354|gb|ADZ76186.1| hypothetical protein HS3.06 [Campylobacter jejuni subsp. jejuni]
          Length = 267

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 3  MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGP 58
          +N K      +  HY   P             +L+K+             + ++E+GAG 
Sbjct: 9  INMKQGDFTEVAKHYHNRPAYS--------PFLLEKLVACINDKNKNFKDLNIVEVGAGT 60

Query: 59 GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
          G LT+ML  +   ++  +E +       +  +    N
Sbjct: 61 GKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSN 97


>gi|323701394|ref|ZP_08113068.1| Methyltransferase type 11 [Desulfotomaculum nigrificans DSM 574]
 gi|323533653|gb|EGB23518.1| Methyltransferase type 11 [Desulfotomaculum nigrificans DSM 574]
          Length = 192

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFF 83
          + KI ++ G  +G  V+++G G G LT     +   A  V  ++  +   
Sbjct: 24 VDKILQTLGLQEGERVLDLGCGIGFLTLPAARVVGAAGFVYGLDIQEDML 73


>gi|323507937|emb|CBQ67808.1| conserved hypothetical protein [Sporisorium reilianum]
          Length = 636

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLT-LGAR--------KVIVIEKDQQFFPILKDISSQHPN 95
             D + + E+GAG G L   +L  L A         +  ++E   +     +        
Sbjct: 312 PYDDLAIYELGAGSGALAHGILDYLRAHEPEIYVRTRYRIVEISARLAAEQRRKLRAFGE 371

Query: 96  RLEIIQDDAL 105
           R+E++ +D L
Sbjct: 372 RVEVVNEDVL 381


>gi|309799798|ref|ZP_07694008.1| adenine-specific methyltransferase [Streptococcus infantis SK1302]
 gi|308116577|gb|EFO54043.1| adenine-specific methyltransferase [Streptococcus infantis SK1302]
          Length = 317

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQD 102
               ++++E+G+G G L    LT   +KV  + IE D     +   ++     ++  +Q 
Sbjct: 107 PAKDLSLLELGSGMGILGASFLTSMNKKVDYLGIEIDDLLIDLAASMAEVMDLQMGFVQG 166

Query: 103 DALK 106
           DA++
Sbjct: 167 DAVR 170


>gi|289165160|ref|YP_003455298.1| methyltransferase [Legionella longbeachae NSW150]
 gi|288858333|emb|CBJ12201.1| putative methyltransferase [Legionella longbeachae NSW150]
          Length = 261

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ-HPNRLEIIQDDAL 105
             +++++G G G +T  +  L    KVI ++KD       +      + N L  +  D  
Sbjct: 38  DESILDVGCGDGKITAAIANLVPNGKVIGLDKDITTIKFAQAKFQPTNHNNLSFLHGDVT 97

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRL-LFNWISADTWPPFWESLTLLFQKEVGERITA 164
           ++     F++      +  +       + + N +  +             Q +   + +A
Sbjct: 98  QISELGKFDLIVSFSCLHFVKDQYTALINIRNNLKENGHIILMLYRKCKAQWDALNKTSA 157

Query: 165 QKNSPHY 171
            K   HY
Sbjct: 158 NKKWSHY 164


>gi|253682337|ref|ZP_04863134.1| ribosomal protein L11 methyltransferase [Clostridium botulinum D
           str. 1873]
 gi|253562049|gb|EES91501.1| ribosomal protein L11 methyltransferase [Clostridium botulinum D
           str. 1873]
          Length = 312

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 16/118 (13%)

Query: 35  ILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +   ++      +   V +IG G G L+     L A+ V+ ++ D       K+    
Sbjct: 163 TTRLCVKALEEYVNEDSVVFDIGTGSGILSIAAAKLNAKHVVGVDLDPVAVDAAKENVEL 222

Query: 93  ---------HPNRLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRLLFN 136
                    + N +E+++  A  V      +I         + + +  Y I + ++ +
Sbjct: 223 NNLNNIEILYGNLMEVVKGKANIVVANILADIIKILAEDVKKFVLDGGYFISSGIILD 280


>gi|156102785|ref|XP_001617085.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805959|gb|EDL47358.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 375

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 5/123 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHP-- 94
           I     +L    +IE G G G LT  L +  L    +   E +++ +  +++  S     
Sbjct: 88  ICLLCNALPNKKIIEAGTGTGCLTYALASCVLPKGVIHTFEYNEERYEEVRNEFSNFENV 147

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            N ++    D +   F +F         +      +    +   +        +      
Sbjct: 148 KNNIKFHHKDVISDSFVEFQPGEIDSVFLDMPNPWLCVPHVKKVLKERGVFVIFLPCIEQ 207

Query: 154 FQK 156
             K
Sbjct: 208 VYK 210


>gi|145609305|ref|XP_001409361.1| hypothetical protein MGG_13406 [Magnaporthe oryzae 70-15]
 gi|145016692|gb|EDK01122.1| hypothetical protein MGG_13406 [Magnaporthe oryzae 70-15]
          Length = 264

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 14/77 (18%)

Query: 7  SHSLKTILSHYKIIPKKYMGQN---FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
          +   K +   Y         QN   FL+D               G+ ++++G GPGN+T 
Sbjct: 2  ATDTKELAKSY--TANNATQQNAGLFLIDR---------LAIRPGMHILDVGCGPGNITA 50

Query: 64 MLLTLGARKVIVIEKDQ 80
           L  L      V   D 
Sbjct: 51 HLAKLVGPTGRVAGIDP 67


>gi|134100874|ref|YP_001106535.1| methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003512|ref|ZP_06561485.1| methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|133913497|emb|CAM03610.1| methyltransferase [Saccharopolyspora erythraea NRRL 2338]
          Length = 201

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           V++IG GPG +T  L   G   V  ++   +     + +  +
Sbjct: 39 PVLDIGCGPGTVTAYLAERGVD-VAGVDLSPRMIEHARRLHPE 80


>gi|13488305|ref|NP_085875.1| hypothetical protein mlr9350 [Mesorhizobium loti MAFF303099]
 gi|14028124|dbj|BAB54716.1| mlr9350 [Mesorhizobium loti MAFF303099]
          Length = 201

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I   K + Q F     I+  + +         V+EIG G G  T +L  L A +V  +E 
Sbjct: 102 IGFDKTVSQPF-----IVALMTDLLAPQPHEAVLEIGTGLGYQTAVLAKL-AGQVCSVEI 155


>gi|328543689|ref|YP_004303798.1| methyltransferase FkbM [polymorphum gilvum SL003B-26A1]
 gi|326413433|gb|ADZ70496.1| Methyltransferase FkbM [Polymorphum gilvum SL003B-26A1]
          Length = 326

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++ I  +   +     ++ GA  G  + ++     G  K + IE D + F IL+  ++ +
Sbjct: 93  VEAILRAIRDV-DYAFVDCGANFGYWSVLVTSAGFGRHKAVAIELDPESFAILERNAAAN 151

Query: 94  PNRLEIIQ-------DDALKVDFEKF 112
            NR   +        DD LK    K 
Sbjct: 152 GNRFTCLHRAISDSDDDVLKFYGAKH 177


>gi|325526301|gb|EGD03912.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia sp. TJI49]
          Length = 255

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 11/128 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        ++EIG G G  T  +         + +E  +     +LK I  Q    + 
Sbjct: 74  DAVFGRQAPRILEIGFGMGASTAEIAAHRPGDDFLGVEVHEPGVGALLKLIGEQDLQNIR 133

Query: 99  IIQDDALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           IIQ DA++V                   P     +    +    L   +++   P  +  
Sbjct: 134 IIQHDAVEVIEHMLAPDSLDGVHIFFPDPWHKARHHKRRLIQPPLVALLASRLKPGAYLH 193

Query: 150 LTLLFQKE 157
               +Q  
Sbjct: 194 CATDWQNY 201


>gi|331654221|ref|ZP_08355221.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli M718]
 gi|331047603|gb|EGI19680.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli M718]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + ++  +P    I+   P  I T L+   
Sbjct: 116 RLKNLDLHNVSTRHGDGWQGWHARAPFDAIIVTAAPPEIPTALMTQL 162


>gi|302528460|ref|ZP_07280802.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces sp.
           AA4]
 gi|302437355|gb|EFL09171.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces sp.
           AA4]
          Length = 430

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-- 93
           L+ I    G   G+ ++++G G G+L          + + +    +     K   +QH  
Sbjct: 192 LELICRKLGLRPGMRLLDVGCGWGSLLVHAAKHHGVEAVGVTISAEQAQHGKTRLAQHDL 251

Query: 94  PNRLEIIQDDALKVDFEKFFNI----------SSPIRIIANLPYNIGTRLLFNWISADTW 143
            +R+E+ + D  ++  E F  +               + A+  + +        +   + 
Sbjct: 252 DDRVEVRRQDYRELAGESFDAVASVEMGEHVGEDNYPVYASTLFRMLKPTGRLLLQQMSR 311

Query: 144 PPFWESLTLLFQKEVGERITAQKNSPHYGRL 174
                      ++ +   +T +  S   G L
Sbjct: 312 GAVAPGGGAFIERYIAPDMTMRPLSRTLGHL 342


>gi|262301051|gb|ACY43118.1| arg methyltransferase [Euperipatoides rowelli]
          Length = 246

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
                  V++IG G G L+      GA+KV  IE         + I + +   N + +I+
Sbjct: 19  HLFKDKVVLDIGCGTGILSMFAAKAGAKKVFGIEC-SSIVEHAQKIVADNHLDNVVSLIK 77

Query: 102 DDALKVDFEKFFNISSPIRII 122
               KV+          + II
Sbjct: 78  G---KVEEVSLPEGYEKVDII 95


>gi|255647533|gb|ACU24230.1| unknown [Glycine max]
          Length = 379

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQD 102
               V+++GAG G L+      GA  V  +E       + K+I     + N + +++ 
Sbjct: 96  KNKVVLDVGAGTGILSLFCAKAGAEHVYAVEC-SHMADMAKEIVEANGYSNVVTVLKG 152


>gi|255639209|gb|ACU19903.1| unknown [Glycine max]
          Length = 376

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQD 102
               V+++GAG G L+      GA  V  +E       + K+I     + N + +++ 
Sbjct: 93  KNKVVLDVGAGTGILSLFCAKAGAEHVYAVEC-SHMADMAKEIVEANGYSNVVTVLKG 149


>gi|254775210|ref|ZP_05216726.1| hypothetical protein MaviaA2_11141 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 247

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +++GAG G  T+ L    A  VI +E D +   +L   S      + +++ 
Sbjct: 34  VDVGAGTGLFTRALAGRAAH-VIAVEPDARMRAVLAHRSPA----VRVLEG 79


>gi|220906205|ref|YP_002481516.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219862816|gb|ACL43155.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 276

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           +++  +        V +IGAG G L+  +   +   KV+ ++   +   I++ I      
Sbjct: 109 QRLVHALNLQPDAVVADIGAGTGYLSFKISSEVPEGKVLAVDIQPEMLAIMEQIKQARQV 168

Query: 95  -NRLEI 99
            N   +
Sbjct: 169 TNVFTV 174


>gi|182437642|ref|YP_001825361.1| putative O-methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178466158|dbj|BAG20678.1| putative O-methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 411

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             I   + E +    G+ V+EIG+G  N   L +++   G  +V+ ++ D         +
Sbjct: 78  PQIQAMMLEQAQVKPGMRVLEIGSGGLNAAYLAELVGEHG--EVVTVDIDPVVTERAHRL 135

Query: 90  SSQH-PNRLEIIQDDA 104
            ++H  +R+ ++  DA
Sbjct: 136 LNEHGYDRVRVLTADA 151


>gi|159045015|ref|YP_001533809.1| S-adenosyl-methyltransferase MraW [Dinoroseobacter shibae DFL 12]
 gi|263446387|sp|A8LSB5|RSMH_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157912775|gb|ABV94208.1| S-adenosyl-L-methionine-dependent methyltransferase
           [Dinoroseobacter shibae DFL 12]
          Length = 333

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G G   + LL  GA +VI +++D     +  D +  + +RL ++  + 
Sbjct: 37  GAGGYARGLLEAGADRVIGVDQDPLALEMAADWAGDYGDRLRLVAGNF 84


>gi|321442011|gb|ADW85420.1| arg methyltransferase [Platynota idaeusalis]
          Length = 244

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLDDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|321442001|gb|ADW85415.1| arg methyltransferase [Lacturidae gen. sp. JCR-2011]
          Length = 244

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAVEC-SNIVDYARKIIEANRLDDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|322488321|emb|CBZ23568.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 440

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           V+EIGAG G L+ M   L A+ V+ +E   +   + +   + +  + +I   + L  +  
Sbjct: 129 VLEIGAGSGLLSMMAAKLNAKWVVAVEGSSEMASLARSNIAANGLQGKIKVLNMLSTELT 188

Query: 111 KFFNISSPIRIIANLPYNI 129
                  P  +++ +   +
Sbjct: 189 PRDLPEPPSILVSEIFGTL 207


>gi|312091648|ref|XP_003147055.1| hypothetical protein LOAG_11489 [Loa loa]
 gi|307757780|gb|EFO17014.1| hypothetical protein LOAG_11489 [Loa loa]
          Length = 388

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 24/128 (18%)

Query: 73  VIVIEKDQQFFPILKDISSQHPN-RLEIIQDDALKV--------DFEKFFNI-------- 115
           V+ +E DQ+   I K   S + + RL ++  DAL          D  + F+         
Sbjct: 259 VVAVELDQKMVEIAKQWFSFNSDPRLTVVIGDALTYVDELAEEEDESRLFDAIFIDVAGS 318

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175
           +    +   LP  +    L    +A           +    ++ ++I  +        LS
Sbjct: 319 THEDGLSCPLPSFVTEDALKKMYAALRRRGVLALNVVTRNDDIADQIKDR-------ILS 371

Query: 176 VLTGWRTK 183
           V + + + 
Sbjct: 372 VFSCYYSH 379


>gi|302333288|gb|ADL23481.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 212

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           ++D   L  I +     +   ++EIG   G  +    ++     V  IE+++      K 
Sbjct: 34  IVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQ 93

Query: 89  ISS--QHPNRLEIIQDDALK 106
             +     N++ II+ +AL 
Sbjct: 94  NLATYHFENQVRIIEGNALD 113


>gi|293609084|ref|ZP_06691387.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829657|gb|EFF88019.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 249

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 23  KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           K + QN       L  + +         V EIG G GNLT++L T    + +++      
Sbjct: 27  KQICQN-------LTGLVQQFCPTTMSCVFEIGCGSGNLTRLLATSFQFEELILN---DL 76

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114
           +  ++   S H   L+ +  D   +DF +  +
Sbjct: 77  YADVQQHFS-HQENLKWLIGDIETLDFPQQLD 107


>gi|312200113|ref|YP_004020174.1| methyltransferase type 11 [Frankia sp. EuI1c]
 gi|311231449|gb|ADP84304.1| Methyltransferase type 11 [Frankia sp. EuI1c]
          Length = 263

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             + G  V+E+GAG G  T+ LL  GAR V+  +        L+  +   P  L
Sbjct: 49  RPIAGADVVEVGAGTGIATRELLGRGAR-VVPFDIGAGMLGRLRARTPGIPAAL 101


>gi|269964516|ref|ZP_06178756.1| hypothetical protein VMC_01860 [Vibrio alginolyticus 40B]
 gi|269830753|gb|EEZ84972.1| hypothetical protein VMC_01860 [Vibrio alginolyticus 40B]
          Length = 239

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 37/206 (17%)

Query: 47  DGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           +   +++IG G G L  M        ++  ++ +       +   +Q P  +R+ +   D
Sbjct: 42  NDAKILDIGTGTGLLALMCAQRFTEAQITAVDIELTAVAAAQKNMAQSPWSDRVSVHHTD 101

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGT-------RLLFNWISADTWPPFWESLTLLFQK 156
            L       F      RII N PY           R               +    L   
Sbjct: 102 ILHFTPTHPFQ-----RIICNPPYFNSGEQSKHSQRATARHTDTLGHNALLQRCYHLLDD 156

Query: 157 EV-GERITAQKNSPHYGRLSVLTGWR----TKA---------TMMFDISPHVFFPSPKVT 202
           E     +        +  L++  GW      +           ++F++S           
Sbjct: 157 EGKASFVLPITEGEQFIELALNQGWYLSRICRVQPSEKKPVHRLLFELSKR------PCD 210

Query: 203 STVIHFIPHLNPIPCCLESLKKITQE 228
           S   H I   N          ++T+E
Sbjct: 211 SQTSHLIIRSNDRYSDD--FIQLTRE 234


>gi|229818005|ref|ZP_04448287.1| hypothetical protein BIFANG_03292 [Bifidobacterium angulatum DSM
           20098]
 gi|229784609|gb|EEP20723.1| hypothetical protein BIFANG_03292 [Bifidobacterium angulatum DSM
           20098]
          Length = 465

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
            ++++G+G G L+ +     +    V+ IE+D       +    Q  + +E+I      V
Sbjct: 50  RILDLGSGSGILSAVTAKRSSHGSSVVAIEQDPALAADSEASLRQVCDDVEVINKSIFDV 109

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLF 135
             E  F+     R+I N PY   +  + 
Sbjct: 110 LLESSFD-----RVILNPPYKKISPTVI 132


>gi|298528369|ref|ZP_07015773.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512021|gb|EFI35923.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 683

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRL 97
           A ++G   G +++EIG G G            +V  +   ++ +  ++   I+    +R+
Sbjct: 449 ARAAGIKPGQSIVEIGCGWGGFALFAAREFDCQVKAVTISREQYNYVQQQVINQGLQDRI 508

Query: 98  EIIQDD 103
           E+  +D
Sbjct: 509 EVAMED 514


>gi|198284531|ref|YP_002220852.1| TrmA family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667266|ref|YP_002427198.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|254766918|sp|B7J921|RUMA_ACIF2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|254766919|sp|B5EPA4|RUMA_ACIF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|198249052|gb|ACH84645.1| RNA methyltransferase, TrmA family [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519479|gb|ACK80065.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 440

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQH 93
           +++         G  ++++  G GN T  +  LGA +V+ IE D +          ++  
Sbjct: 283 VRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGA-QVLGIEGDARLVALAAENAAANGL 341

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            ++      D  +   E F    +  +++ + P +    +L + 
Sbjct: 342 ADKARYAVADLTQARMEDFAPAGAIDKMLIDPPRSGAIEVLRSL 385


>gi|108758357|ref|YP_631969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myxococcus xanthus DK
           1622]
 gi|108462237|gb|ABF87422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myxococcus xanthus DK
           1622]
          Length = 431

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RL 97
               G+ +  TV+E+ +G GN T  L    A  V+ +E        L   S+       +
Sbjct: 277 VYELGARESDTVLELYSGNGNFTFPLAGTAA-SVLGVESSPVGVE-LAQRSAHEGGVTNV 334

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             IQ DA KV  +          +    P   G   L  W++A
Sbjct: 335 RFIQGDARKV-CDGLVAEQRRFDVCLADPPRAGAPGLAKWMTA 376


>gi|21227980|ref|NP_633902.1| methyltransferase [Methanosarcina mazei Go1]
 gi|20906406|gb|AAM31574.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 197

 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
             +V ++G G G L      LGARKV+  + D +   + +  + +    +E I  D  +V
Sbjct: 47  DDSVHDLGCGTGILAIGAKVLGARKVVGYDTDPKALELARKNAEKIGVDVEFICSDISEV 106


>gi|330815774|ref|YP_004359479.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Burkholderia gladioli BSR3]
 gi|327368167|gb|AEA59523.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Burkholderia gladioli BSR3]
          Length = 258

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 17/140 (12%)

Query: 46  LDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
                ++EIG G G  T  +         + +E  +     +LK I  Q  + + IIQ D
Sbjct: 82  RQAPRILEIGFGMGGSTAEIAAHRRDDDFLGVEVHEPGVGALLKLIGEQDLSNIRIIQHD 141

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           A++V                       +    +    D W         L Q     ++ 
Sbjct: 142 AVEVLENMLAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPFVAQLV 186

Query: 164 AQKNSPHYGRLSVLTGWRTK 183
           A+     Y   +       +
Sbjct: 187 ARLKPGGYLHCATDWQNYAE 206


>gi|307332219|ref|ZP_07611300.1| Methyltransferase type 12 [Streptomyces violaceusniger Tu 4113]
 gi|306882119|gb|EFN13224.1| Methyltransferase type 12 [Streptomyces violaceusniger Tu 4113]
          Length = 239

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 6/113 (5%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +     G  ++++G G G  T   L     +V+ I+       + +D   +         
Sbjct: 56  AESLPPGSRLLDVGCGTGLPTARQLVDAGHEVVGIDISPGMLKLARDNVPEA----TFHH 111

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
            D + +     +    P+ +       I        +     P    +L  + 
Sbjct: 112 VDIVDLRVGGRYGPGGPLEL--GPFDGIAGYFTLLLLPRPEIPYALRTLHAVL 162


>gi|302871656|ref|YP_003840292.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574515|gb|ADL42306.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 314

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 37/68 (54%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G+ V+++G G G L      L A++V+ ++ D+    + K+ ++ +   +EI +++ 
Sbjct: 166 VKPGMNVLDVGTGSGILAIAAKKLLAKRVLAVDIDEVAVKVAKENANLNGVEIEIKKNNL 225

Query: 105 LKVDFEKF 112
           ++   EKF
Sbjct: 226 VEGIEEKF 233


>gi|294084709|ref|YP_003551467.1| hypothetical protein SAR116_1140 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664282|gb|ADE39383.1| conserved hypothetical protein 95 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 189

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103
           L    V+++ +G G L    L+ GAR    +EKD     +L+   ++    N   +I  +
Sbjct: 45  LKDAHVLDLFSGTGALGLEALSRGARTACFVEKDHNALSVLRANIARLKQQNSCMVIAGN 104

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           AL +             ++A+ PY  G  LL
Sbjct: 105 ALSLTG---IRGDKASLVLADAPYGTGDGLL 132


>gi|284042773|ref|YP_003393113.1| Cyclopropane-fatty-acyl-phospholipid synthase [Conexibacter woesei
           DSM 14684]
 gi|283946994|gb|ADB49738.1| Cyclopropane-fatty-acyl-phospholipid synthase [Conexibacter woesei
           DSM 14684]
          Length = 423

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           L  +A   G  +G  V+++G G G+           +V+ I        + ++   ++  
Sbjct: 177 LDLVASKLGLREGERVLDVGCGWGSFALHAAERYGVEVVGITLSPSQAALARERVAAAGL 236

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            +R+EI   D  ++  E+F  ISS   +       I
Sbjct: 237 SDRVEIRLQDYRELGGEQFDAISSIGMVEHVGETQI 272


>gi|258648575|ref|ZP_05736044.1| ribosomal protein L11 methyltransferase [Prevotella tannerae ATCC
           51259]
 gi|260851353|gb|EEX71222.1| ribosomal protein L11 methyltransferase [Prevotella tannerae ATCC
           51259]
          Length = 285

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDISSQHPNRLEIIQDD 103
            L G  V+++G G G L  +    GA   + I+ D+      +++++  H N +E++  D
Sbjct: 145 DLKGKKVLDMGCGTGLLAILAAMKGADNCMAIDIDEWCVNNAMENLALNHINNIEVLLGD 204

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
           A         +      I+AN+  N+    + ++I       ++
Sbjct: 205 A-----AGLKDKGPFDVILANIHLNVILNDMPDYIERLNPSGYF 243


>gi|322420988|ref|YP_004200211.1| protein-L-isoaspartate O-methyltransferase [Geobacter sp. M18]
 gi|320127375|gb|ADW14935.1| protein-L-isoaspartate O-methyltransferase [Geobacter sp. M18]
          Length = 221

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E+        V+EIG G G     +L+L A +V  +E+         +   +
Sbjct: 69  PYIVAYMIEALELKGEEKVLEIGTGSGY-AAAVLSLCAAEVFTVERIASLARQADERLRE 127

Query: 93  HPNR-LEIIQDD 103
              R + +   D
Sbjct: 128 LGYRNVTVHLGD 139


>gi|206579254|ref|YP_002236887.1| protein-L-isoaspartate O-methyltransferase [Klebsiella pneumoniae
           342]
 gi|238057827|sp|B5XV38|PIMT_KLEP3 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|206568312|gb|ACI10088.1| protein-L-isoaspartate O-methyltransferase [Klebsiella pneumoniae
           342]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLTLTPESRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKSLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALLAQL 162


>gi|203368550|gb|ABG57280.2| putative cyclopropane fatty acid synthase A [Pseudomonas putida]
          Length = 421

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 36/169 (21%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L++I +         ++EIG+G G+L     T    +V            L +  +Q+ +
Sbjct: 182 LERICQKLELSPDDHLLEIGSGWGSLAIHAATRYGCRVTT--------TTLSE--AQYSH 231

Query: 96  RLEIIQD-------DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            LE ++          L+ D+         +  I               +     P ++ 
Sbjct: 232 TLERVKALGLGQRVQVLREDYRDLQGTFDKLVSIEM----------IEAVGHRYLPVYFR 281

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
               L + E    + A         +++      +A    D      FP
Sbjct: 282 QCASLIKPEGLMLLQA---------ITIRDQRYAQAQRSVDFIQRYIFP 321


>gi|218440769|ref|YP_002379098.1| methylase/helicase [Cyanothece sp. PCC 7424]
 gi|218173497|gb|ACK72230.1| putative methylase/helicase [Cyanothece sp. PCC 7424]
          Length = 1536

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           ++       V+E  +G G L       GA+ V+     Q+   IL  I +  P    +  
Sbjct: 213 AAQITPDDLVLEPSSGTGILATFACVNGAQLVLNEICPQRR-GILAQIFADTP----LFN 267

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            +A ++D +       P  ++ N P+    +++  
Sbjct: 268 HNAEQID-DYLDGKYHPTVVVMNPPFTASPKIVKR 301


>gi|152971627|ref|YP_001336736.1| protein-L-isoaspartate O-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896223|ref|YP_002920959.1| protein-L-isoaspartate O-methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041491|ref|ZP_06014689.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|330008322|ref|ZP_08306197.1| protein-L-isoaspartate O-methyltransferase [Klebsiella sp. MS 92-3]
 gi|166220559|sp|A6TD35|PIMT_KLEP7 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|150956476|gb|ABR78506.1| protein-L-isoaspartate O-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548541|dbj|BAH64892.1| protein-L-isoaspartate O-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259041150|gb|EEW42223.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|328535180|gb|EGF61681.1| protein-L-isoaspartate O-methyltransferase [Klebsiella sp. MS 92-3]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLTLTPESRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKSLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALLAQL 162


>gi|145594975|ref|YP_001159272.1| methyltransferase type 11 [Salinispora tropica CNB-440]
 gi|145304312|gb|ABP54894.1| Methyltransferase type 11 [Salinispora tropica CNB-440]
          Length = 284

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP-NR 96
              +G   G  V+++G G G +             V  I+       +  D  ++    +
Sbjct: 37  VSCAGIRPGDHVLDVGCGRGAVLLPAAEATGPTGHVTGIDLAPTMVTLTADDVARAGLTQ 96

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           +E+   DA       F   S  + +   + + +   
Sbjct: 97  VEVRLGDA---QQPSFAPHSFDVVLAGMVVFLLSAP 129


>gi|268554982|ref|XP_002635479.1| C. briggsae CBR-PMT-2 protein [Caenorhabditis briggsae]
 gi|187032293|emb|CAP28543.1| CBR-PMT-2 protein [Caenorhabditis briggsae AF16]
          Length = 437

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 17/146 (11%)

Query: 25  MGQNFLL------DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            G NF+       +L I+K+         G T+++IG G G   + +       V  I+ 
Sbjct: 199 FGVNFISPGGYAENLKIIKRF---GDLKPGQTMLDIGVGIGGGARQVADEFGVHVHGIDL 255

Query: 79  DQQFFPI-LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
                 I L+ +  +  +R++    DAL     +F + S       +   +I        
Sbjct: 256 SSNMLAIALERLHEEKDSRVKYSITDALVY---QFEDDSFDYVFSRDCIQHI--PDTDKL 310

Query: 138 ISA--DTWPPFWESLTLLFQKEVGER 161
            S       P  + L  ++ K  GE+
Sbjct: 311 FSRIYKALKPGGKVLITMYGKGYGEQ 336


>gi|158313884|ref|YP_001506392.1| methyltransferase type 12 [Frankia sp. EAN1pec]
 gi|158109289|gb|ABW11486.1| Methyltransferase type 12 [Frankia sp. EAN1pec]
          Length = 246

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 4/123 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
                  TV++ G G G  T  LL    R +VI ++        L+        RL I+ 
Sbjct: 28  LALTGSETVLDAGCGTGRDTAALLEALPRGRVIAVDASASMLDQLRARLPDT-ERLTILA 86

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D L  D          +  +A L +    + +F+ ++A   P    S+       +   
Sbjct: 87  ADLL--DPLPIAEPVDAVLSVAVLHWIADHQRVFDNLAAILRPGGRLSVDCGGHGNIASV 144

Query: 162 ITA 164
             A
Sbjct: 145 QAA 147


>gi|116620641|ref|YP_822797.1| hypothetical protein Acid_1520 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223803|gb|ABJ82512.1| conserved hypothetical protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 182

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--Q 92
           I++++  +     G  V ++G G G +  M       + + +E         ++      
Sbjct: 38  IVERMLTAGRVKPGEVVYDLGCGDGRIVIMAAQKFGARAVGVELLPDIARKARERVQTLG 97

Query: 93  HPNRLEIIQDDALKVD 108
             +R+ II+  AL+VD
Sbjct: 98  LADRVTIIEGSALRVD 113


>gi|332715761|ref|YP_004443227.1| methyltransferase [Agrobacterium sp. H13-3]
 gi|325062446|gb|ADY66136.1| methyltransferase [Agrobacterium sp. H13-3]
          Length = 362

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 3/121 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I +       + +++IG GPG     +L       + I+ D  F    ++  S + N   
Sbjct: 35  IVQKDVGNRKVRILDIGCGPGTAVGHILEKFDVDYVGIDYDPIFIEAARNRYSNYEN-CR 93

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
            I  DA   D   +  I + I I      +I        I             +    EV
Sbjct: 94  FIVGDA--TDESLYETIEADIVIALETLEHIHLNRTVRVIEHVCAIVRPRIFLVTVPVEV 151

Query: 159 G 159
           G
Sbjct: 152 G 152


>gi|319740471|gb|ADV60529.1| arg methyltransferase [Oberthueria formosibia]
          Length = 244

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAVEX-SNIVDYARKIIEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|312383011|gb|EFR28253.1| hypothetical protein AND_04041 [Anopheles darlingi]
          Length = 348

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +++ I +   S      +EIG+G G ++  +L    +   +     +    L   ++ 
Sbjct: 156 EELVELILQQMDSQKETFFLEIGSGSGAISLSILKHVPKSSGIAIDQSRLACELTRENAA 215

Query: 93  ---HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                +RL I +   L  D            I++N PY
Sbjct: 216 AVGLDSRLRIFKH-KLINDLPDTLAGEQFDMIVSNPPY 252


>gi|302505731|ref|XP_003014572.1| hypothetical protein ARB_07134 [Arthroderma benhamiae CBS 112371]
 gi|291178393|gb|EFE34183.1| hypothetical protein ARB_07134 [Arthroderma benhamiae CBS 112371]
          Length = 517

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 79/261 (30%), Gaps = 54/261 (20%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            G +V++IG GPG     L+  G  +V  I+  Q+     +             + D  K
Sbjct: 45  AGSSVLDIGCGPGGPASRLIKAG-FQVTGIDISQKMVDFCQKSFPG-----TFHKADMTK 98

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL----LFQKEVGERI 162
            +  + F+    +  +    Y     ++F   S           T+      Q E     
Sbjct: 99  YEPSQQFDAIVSLFNLFQASYTTTYSMVFKMASWLRPGGTLILGTIAAEDYIQDEAA-LG 157

Query: 163 TAQKNS-------PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI 215
           TA+K+           GR  V+       +   ++                 FI  ++  
Sbjct: 158 TARKHQYIENYDAKFMGR--VIPATFLTMSRWLNVVQQAGL-----------FIQVVDLC 204

Query: 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLR--------------A 261
              ++  K      F   RK    +L+ L G   L         R              A
Sbjct: 205 DFEIKGFKHKENHLFITARKM---NLEPLFGPYPL------PTFRRRPHLLSEGAWKPFA 255

Query: 262 ENLSIEDFCRITNILTDNQDI 282
           E L+  +F  +   +  N+++
Sbjct: 256 ERLTRHEFDAVLKAVESNKEV 276


>gi|260430921|ref|ZP_05784892.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis
          ITI-1157]
 gi|260414749|gb|EEX08008.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis
          ITI-1157]
          Length = 331

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
          G G  T+ LL  GA +VI +++D   F +  D ++++ +RL
Sbjct: 38 GAGGYTRGLLEAGADRVIGVDRDPLAFEMAADWAAEYGDRL 78


>gi|271501629|ref|YP_003334655.1| methyltransferase small domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270345184|gb|ACZ77949.1| methyltransferase small domain protein [Dickeya dadantii Ech586]
          Length = 253

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 15/168 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
                 +++IG G G LT ML     G   +  +E D        D  +  P  + + I 
Sbjct: 44  LHQETRILDIGCGSGLLTLMLAQRSGGLVPIDGVELDAAASAQAADNVALSPWVDAIRIY 103

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY-------NIGTRLLFNWISADTWPPFWESLTLL 153
           Q D L    +     S    I++N PY           R    + +  T     +  + L
Sbjct: 104 QADILAYARD---TASRYSLIVSNPPYFSPGVDCASTQRAQARYTTTLTHDALLDCASRL 160

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKV 201
            + E G        S     L++      +A +  D++     P  +V
Sbjct: 161 LEPE-GRFCVVLPVSGAEDFLTLAQQSAWRADIRVDVADSASRPVNRV 207


>gi|302553321|ref|ZP_07305663.1| O-methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302470939|gb|EFL34032.1| O-methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 692

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             ++  + +   +  G  ++E+GAG G    L   L+   +  V  ++ D       +  
Sbjct: 356 PGVVALMLDQLEAQPGERILELGAGTGYNAALLAHLV-RESGHVTTLDVDDDLVEGARAH 414

Query: 90  SSQ 92
            + 
Sbjct: 415 LAA 417


>gi|297559620|ref|YP_003678594.1| methyltransferase type 12 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844068|gb|ADH66088.1| Methyltransferase type 12 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 227

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 37  KKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            ++      L  G  V+++G+G G  T   L     +V   E   +   I +    +   
Sbjct: 50  DRVRRLLDLLPPGAHVLDLGSGTGVPTARQLVAAGARVTGYEISGRMVEIARRNVPEA-- 107

Query: 96  RLEIIQDDALKVDFEK 111
               ++ D L +D  +
Sbjct: 108 --TFVRADILDLDPAE 121


>gi|225561730|gb|EEH10010.1| polyketide synthase [Ajellomyces capsulatus G186AR]
          Length = 2492

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 30   LLDLNIL----KK---IAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            L DL ++     +   I   + S   + ++EIGAG G  T  LL 
Sbjct: 1352 LTDLYVVMDSVDRSQFIRHLAHSKPNLRILEIGAGTGASTAGLLK 1396


>gi|224476838|ref|YP_002634444.1| tRNA (guanine-N(7)-)-methyltransferase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254789105|sp|B9DN65|TRMB_STACT RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|222421445|emb|CAL28259.1| putative methyltransferase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 211

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 52  IEIGAGPGN-LTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDDALKVDF 109
           IE+G+G G  +T++         + +E+D+     +L  +  +    +++I +DA+++  
Sbjct: 42  IEVGSGMGQFITELAAQHPEVNFVSLERDKNVMIRVLDKVLEKDLQNIKLICNDAMELT- 100

Query: 110 EKFFNISSPIRIIANL 125
             +F      R+  N 
Sbjct: 101 -DYFKDGEVDRVYLNF 115


>gi|222110974|ref|YP_002553238.1| tRNA (guanine-n(7)-)-methyltransferase [Acidovorax ebreus TPSY]
 gi|221730418|gb|ACM33238.1| tRNA (guanine-N(7)-)-methyltransferase [Acidovorax ebreus TPSY]
          Length = 260

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 17/146 (11%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRL 97
           A ++       V+EIG G G  T  +  +      +  E  +     +LK I  Q  + +
Sbjct: 80  ATAAFGRSAPLVLEIGFGMGEATAHIARVRPQDNFLCCEVHEPGVGALLKRIGEQDIHNI 139

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            I+Q DA++V                      G+    +    D W     +   L Q  
Sbjct: 140 RILQHDAVEVLEHMLAP---------------GSLDGVHIFFPDPWHKKRHNKRRLIQPP 184

Query: 158 VGERITAQKNSPHYGRLSVLTGWRTK 183
           +  ++ A+     Y   +       +
Sbjct: 185 LVAQLAARLKPGGYIHCATDWQAYAE 210


>gi|212550575|ref|YP_002308892.1| protein methyltransferase HemK [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548813|dbj|BAG83481.1| protein methyltransferase HemK [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 303

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           L+DL I+KKI  +  +    T+++IG G G +   L       K+  ++   +   + + 
Sbjct: 109 LVDL-IIKKI--ALHNFSHCTILDIGTGSGCIALALAKYLPDTKIYALDISGKALEVARQ 165

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR---LLFNWISADTWPP 145
            +  +  ++   Q D         F  +S   I++N PY   +    LL N +  +    
Sbjct: 166 NAQMNEMKVIFFQQDI--FSPLTQFCPTSFSVIVSNPPYITISEKKNLLPNILHYEPHQA 223

Query: 146 FWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183
            +        KE       +        L+       +
Sbjct: 224 LF------VPKEFPLIFYDRIADIGKQYLTANGLLFFE 255


>gi|167464491|ref|ZP_02329580.1| ribosomal protein L11 methyltransferase [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 322

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPN 95
           KI E      G  VI++G G G L+     LGA  V+ I+ D        +    +   +
Sbjct: 166 KILEQV-VRGGEDVIDVGTGSGILSIAAAKLGAEHVLAIDLDPVAVKSAGENSKLNGMQS 224

Query: 96  RLEIIQDDAL----KVDFEKFFNISSPIRII 122
           R+ + Q D L      +     N+  P++I+
Sbjct: 225 RIMVRQSDLLGILEHSEKRDELNVKMPVQIV 255


>gi|145300354|ref|YP_001143195.1| 23S rRNA 5-methyluridine methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|189045732|sp|A4SRC5|RUMA_AERS4 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|142853126|gb|ABO91447.1| 23S rRNA (uracil-5-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 439

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++ +++ +     G+     V+++  G GN T  L    AR+V+ +E D       ++ +
Sbjct: 278 INQSMVAQALAWLGASKDDKVLDLFCGIGNFTLPLA-RQAREVVGVEGDLAMVARAEENA 336

Query: 91  SQHP-NRLEIIQDD 103
            ++  +     + D
Sbjct: 337 RRNGIDNARFYKAD 350


>gi|55379714|ref|YP_137564.1| ubiquinone/menaquinone biosynthesis methyltransferase [Haloarcula
           marismortui ATCC 43049]
 gi|55232439|gb|AAV47858.1| ubiquinone/menaquinone biosynthesis methyltransferase [Haloarcula
           marismortui ATCC 43049]
          Length = 206

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 6/78 (7%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           F+ D  +  +            V+++G G G  T+ LL        V   DQ     L  
Sbjct: 27  FIWDERMRDEAIAMLDLSPDDKVLDVGCGTGFATEGLLE---HVDTVYGLDQ-SPHQLSK 82

Query: 89  ISSQHP--NRLEIIQDDA 104
              +      +     DA
Sbjct: 83  AFEKFGKFGDVRYHLGDA 100


>gi|41407788|ref|NP_960624.1| hypothetical protein MAP1690c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396142|gb|AAS04007.1| hypothetical protein MAP_1690c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 255

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +++GAG G  T+ L    A  VI +E D +   +L   S      + +++ 
Sbjct: 42  VDVGAGTGLFTRALAGRAAH-VIAVEPDARMRAVLAHRSPA----VRVLEG 87


>gi|332973101|gb|EGK11036.1| biotin synthesis BioC protein [Desmospora sp. 8437]
          Length = 277

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 33  LNILKKIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDI 89
             +  +I ++         +++E+G G G LTQ+L        ++ ++  ++     ++ 
Sbjct: 27  QRMAHRIMQTLEENRVEAGSILELGCGTGYLTQLLSEYFPDAGLVGMDLSKRMVATARER 86

Query: 90  SSQHPNRLEIIQDDA 104
           +    NR+     D 
Sbjct: 87  TG---NRVRYWVGDV 98


>gi|321442021|gb|ADW85425.1| arg methyltransferase [Podosesia syringae]
          Length = 244

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EII+
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDFARKIVEANRLDDVIEIIK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|323137210|ref|ZP_08072289.1| Methyltransferase type 11 [Methylocystis sp. ATCC 49242]
 gi|322397568|gb|EFY00091.1| Methyltransferase type 11 [Methylocystis sp. ATCC 49242]
          Length = 242

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 53  EIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDAL 105
           EIG G G  T  LL      K+I ++   +     ++  + +    R+E  + DAL
Sbjct: 53  EIGCGTGVCTLALLAGRDDLKLIAVDSAARMLEQARENLAGYVAAGRVEFKEADAL 108


>gi|298506509|gb|ADI85232.1| TPR domain protein [Geobacter sulfurreducens KN400]
          Length = 566

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +       V+EIG G G L+ M   LGAR V   E 
Sbjct: 296 AAVTPETRVLEIGTGSGLLSMMSARLGARHVTTCEV 331


>gi|312113131|ref|YP_004010727.1| hemolysin A [Rhodomicrobium vannielii ATCC 17100]
 gi|311218260|gb|ADP69628.1| hemolysin A [Rhodomicrobium vannielii ATCC 17100]
          Length = 266

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDDALKVD 108
           T +++GA  G  T++LL  GA +V  ++  +      L+         + ++  +A    
Sbjct: 104 TCLDVGASTGGFTEVLLERGATRVYAVDVGRDQLHASLRQ-------NVRVVSMEAQDAR 156

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN 167
                   +PI  +      I    +   +     P  W    +  Q EVG     +  
Sbjct: 157 SLAPALFDAPIEAVTCDVSFISLEKVLPAVLPLAAPGAWLVALVKPQFEVGRDGVGKGG 215


>gi|251793926|ref|YP_003008658.1| methyltransferase domain-containing protein [Aggregatibacter
           aphrophilus NJ8700]
 gi|247535325|gb|ACS98571.1| methyltransferase domain family [Aggregatibacter aphrophilus
           NJ8700]
          Length = 266

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E+       TV++IG GPG     L   G+ +V  ++       +L +    +  +L++ 
Sbjct: 53  ETMQVQPDETVLDIGCGPGTFAIPLAQQGS-QVYALDYSTGMLDVLAE----YKQKLQLA 107

Query: 101 QDDALKVDFEKFFNISSPIRII 122
             + ++  + + +N    + +I
Sbjct: 108 NLNLIRRSWAEDWNDVPQVDVI 129


>gi|291302174|ref|YP_003513452.1| Pyridoxal-5'-phosphate-dependent protein subunit beta
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571394|gb|ADD44359.1| Pyridoxal-5'-phosphate-dependent protein beta subunit
           [Stackebrandtia nassauensis DSM 44728]
          Length = 388

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 30/68 (44%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           L+++++  E      G  ++E  +G   L   L  + +   + +  D    P L+ + + 
Sbjct: 59  LHLVRRARERGDLAPGAPIVESSSGTLGLGLALAGMASGHPVTVVADPGLEPSLRRLLAA 118

Query: 93  HPNRLEII 100
           +   ++I+
Sbjct: 119 YGAHVDIV 126


>gi|269127827|ref|YP_003301197.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Thermomonospora curvata DSM 43183]
 gi|268312785|gb|ACY99159.1| protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Thermomonospora curvata DSM 43183]
          Length = 396

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           E     D   V+++G GPG  T  LL   LG  +V+ IE D+Q     K        R  
Sbjct: 118 ELLAPRDHERVLDVGTGPG-WTAALLSARLGDGRVVSIEVDEQVAEQAKVNLEAAGARPR 176

Query: 99  IIQDD 103
           ++  D
Sbjct: 177 LVVAD 181


>gi|224826229|ref|ZP_03699331.1| ribosomal protein L11 methyltransferase [Lutiella nitroferrum 2002]
 gi|224601330|gb|EEG07511.1| ribosomal protein L11 methyltransferase [Lutiella nitroferrum 2002]
          Length = 298

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 27/150 (18%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +    G +V++ G G G L    L LGA   + I+ D Q     +D ++Q+         
Sbjct: 159 ANIKGGESVLDYGCGSGILAIAALKLGAASAVGIDIDPQAVRASQDNAAQNQVVARFYLP 218

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTR--LLFNWISADTWPPFWESLTLLFQKEVGE 160
           DA           + P +    L   +     LL   +S          L+ + Q++  E
Sbjct: 219 DA-----------TPPAQYDVVLANILANPLRLLGELLSGHVRAGGKIVLSGILQEQAEE 267

Query: 161 RITAQKNSPHYGRLSVLTGWRTKAT-MMFD 189
                        LS +          +FD
Sbjct: 268 -------------LSAIYATWFDMEPPVFD 284


>gi|118359720|ref|XP_001013098.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|89294865|gb|EAR92853.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 564

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 52  IEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILK---DISSQHPNRLEIIQDDALKV 107
           +EIG G G ++  LL   ++   I I+K +    + K   +++   P RL++I  + LK 
Sbjct: 58  LEIGIGTGAISLSLLKENSQFTGIAIDKQKFCIELAKQNLNLNKIDPQRLQLIHLECLKF 117

Query: 108 DFEKFFNISSP--IRIIANLPYNIGTRL 133
                          I++N PY   +++
Sbjct: 118 FQNNLNQNPDQQFDFIVSNPPYIPTSQV 145


>gi|73959971|ref|XP_547254.2| PREDICTED: similar to Protein arginine N-methyltransferase 6
           (Heterogeneous nuclear ribonucleoprotein
           methyltransferase-like protein 6) [Canis familiaris]
          Length = 376

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIE--------KDQQFFPILKDISSQHPNRL 97
           L G TV+++GAG G L+   +  GAR+V  +E        +D      L+D     P  +
Sbjct: 82  LRGKTVLDVGAGTGILSLFCVQAGARRVYAVEASAIWQQARDVVRLNGLEDRVHVLPGPV 141

Query: 98  EIIQ 101
           E ++
Sbjct: 142 ETVE 145


>gi|39997571|ref|NP_953522.1| TPR domain protein [Geobacter sulfurreducens PCA]
 gi|39984462|gb|AAR35849.1| TPR domain protein [Geobacter sulfurreducens PCA]
          Length = 566

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +       V+EIG G G L+ M   LGAR V   E 
Sbjct: 296 AAVTPETRVLEIGTGSGLLSMMSARLGARHVTTCEV 331


>gi|68535214|ref|YP_249919.1| tRNA (guanine-N(7))-methyltransferase [Corynebacterium jeikeium
           K411]
 gi|91208033|sp|Q4JY06|TRMB_CORJK RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|68262813|emb|CAI36301.1| putative tRNA (guanine-N7-)-methyltransferase [Corynebacterium
           jeikeium K411]
          Length = 254

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILKDISSQHPNRLEIIQD 102
             D  T+ EIG+G G  T  +  L A + ++ +E        +L  +     + + +I+ 
Sbjct: 74  DRDAETIAEIGSGTGTSTAAMAPLEAEKNIVAVELYRPGLAKLLGSVVRGDIHNVRMIRG 133

Query: 103 DALKVDFEKFFNIS 116
           D ++V    F   S
Sbjct: 134 DGVEVLQRMFAPES 147


>gi|15921717|ref|NP_377386.1| hypothetical protein ST1428 [Sulfolobus tokodaii str. 7]
 gi|15622504|dbj|BAB66495.1| 164aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 164

 Score = 36.7 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK-DQQFFPILKDIS 90
             +++++ E + +     V ++G G G  +         +K + IE  D++    L++I 
Sbjct: 17  EKVVRRMLEIANAGPEDIVYDLGCGDGRIIITAAKDFNVKKAVGIEINDERIKEALENIK 76

Query: 91  -SQHPNRLEIIQDDALKVDFEK 111
            +   N+  +I+ +  ++D  +
Sbjct: 77  RNGVENKAIVIKGNFFEIDLSE 98


>gi|321441961|gb|ADW85395.1| arg methyltransferase [Apha aequalis]
          Length = 244

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HIFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|320105218|ref|YP_004180809.1| type 12 methyltransferase [Isosphaera pallida ATCC 43644]
 gi|319752500|gb|ADV64260.1| Methyltransferase type 12 [Isosphaera pallida ATCC 43644]
          Length = 264

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            +++I E         ++++G G G  T   L    R+V+ ++  ++    L+    ++P
Sbjct: 38  TVRRILELRQVPRDAAILDVGCGWGT-TLEALERDGRRVVGMDVSRKSLEALER---ENP 93

Query: 95  NRLEIIQDDALKVDFEKFFN 114
            R  +I+ D L   + K   
Sbjct: 94  QR-RLIEAD-LTQPWPKHHE 111


>gi|306833420|ref|ZP_07466547.1| protein-(glutamine-N5) methyltransferase [Streptococcus bovis ATCC
           700338]
 gi|304424190|gb|EFM27329.1| protein-(glutamine-N5) methyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 276

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
            S   + V++IG G G +   L       +V   +       ++K+ + ++   L +IQ 
Sbjct: 106 NSRADLRVLDIGTGSGAIAISLKAARPNWQVTASDISADALQLVKENALKNQVELTLIQS 165

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D      E+F        II+N PY
Sbjct: 166 DVFSQITERF------DMIISNPPY 184


>gi|289642152|ref|ZP_06474303.1| Methyltransferase type 11 [Frankia symbiont of Datisca glomerata]
 gi|289507998|gb|EFD28946.1| Methyltransferase type 11 [Frankia symbiont of Datisca glomerata]
          Length = 254

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          +   L G  ++E+GAG G  T+ LL  GAR VI ++        L++ + +
Sbjct: 33 AGRELAGADILEVGAGTGIATRDLLARGAR-VIPVDHSSVMLGRLRERTPE 82


>gi|288933841|ref|YP_003437900.1| protein-L-isoaspartate O-methyltransferase [Klebsiella variicola
           At-22]
 gi|290511078|ref|ZP_06550447.1| protein-L-isoaspartate O-methyltransferase [Klebsiella sp. 1_1_55]
 gi|288888570|gb|ADC56888.1| protein-L-isoaspartate O-methyltransferase [Klebsiella variicola
           At-22]
 gi|289776071|gb|EFD84070.1| protein-L-isoaspartate O-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLTLTPESRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKSLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALLAQL 162


>gi|257870910|ref|ZP_05650563.1| modification methylase HemK [Enterococcus gallinarum EG2]
 gi|257805074|gb|EEV33896.1| modification methylase HemK [Enterococcus gallinarum EG2]
          Length = 278

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
              + + V++IG G G +   L L     ++  ++  +    + K+ ++Q    +   Q 
Sbjct: 109 EPAENLRVVDIGTGTGAIAVSLKLARPHWQIAAVDLSEAALAVAKENAAQLGAEVAFYQG 168

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D L    ++ ++I     I++N PY
Sbjct: 169 DTLTPVGDQSWDI-----IVSNPPY 188


>gi|227533882|ref|ZP_03963931.1| possible cyclopropane-fatty-acyl-phospholipid synthase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227188518|gb|EEI68585.1| possible cyclopropane-fatty-acyl-phospholipid synthase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 393

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--S 90
           LN +  I        G T+++IG G G L          KV+ I   ++ F ++ D   S
Sbjct: 153 LNKIDHILRKLNPQPGRTLLDIGCGWGTLMLRAAKTYHLKVVGITLSKEQFKLVSDRIES 212

Query: 91  SQHPNRLEIIQDDALKVDFEKF 112
               +  E++  D  +++ E F
Sbjct: 213 EHLSDVAEVLYMDYRELNREPF 234


>gi|227548104|ref|ZP_03978153.1| possible methyltransferase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079830|gb|EEI17793.1| possible methyltransferase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 194

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDAL 105
             TV+++ AG G L     + GA +V+++E D +   +++  +S   HPN   +  +   
Sbjct: 44  DQTVLDLFAGSGALGLEAASRGASEVVLVENDPRAVKVIEYNASVVGHPN---VHVEPVK 100

Query: 106 KVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
              +      +    ++A+ PY++    +   ++A   P   +   ++ ++
Sbjct: 101 ASTYLARAPRNHFSMVLADPPYDLADESVAEMLAALE-PALVDGAVVVVER 150


>gi|239629965|ref|ZP_04672996.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|239527577|gb|EEQ66578.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
          Length = 393

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--S 90
           LN +  I        G T+++IG G G L          KV+ I   ++ F ++ D   S
Sbjct: 153 LNKIDHILRKLNPQPGRTLLDIGCGWGTLMLRAAKTYHLKVVGITLSKEQFKLVSDRIES 212

Query: 91  SQHPNRLEIIQDDALKVDFEKF 112
               +  E++  D  +++ E F
Sbjct: 213 EHLSDVAEVLYMDYRELNREPF 234


>gi|254422575|ref|ZP_05036293.1| Methyltransferase domain family [Synechococcus sp. PCC 7335]
 gi|196190064|gb|EDX85028.1| Methyltransferase domain family [Synechococcus sp. PCC 7335]
          Length = 251

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHP 94
            ++        V +IGAG G ++  L   +   KVI ++   +   +L+    Q+ 
Sbjct: 84  VDALMLERDDVVADIGAGLGYISFQLAKWVDQGKVIAVDVQPEMLALLEAERDQYD 139


>gi|118463304|ref|YP_881917.1| hypothetical protein MAV_2728 [Mycobacterium avium 104]
 gi|118164591|gb|ABK65488.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 255

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +++GAG G  T+ L    A  VI +E D +   +L   S      + +++ 
Sbjct: 42  VDVGAGTGLFTRALAGRAAH-VIAVEPDARMRAVLAHRSPA----VRVLEG 87


>gi|300797830|ref|NP_001178528.1| putative protein arginine N-methyltransferase 10 [Rattus
           norvegicus]
 gi|109508630|ref|XP_001071216.1| PREDICTED: protein arginine methyltransferase 10 (putative)-like
           [Rattus norvegicus]
          Length = 841

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 28  NF--LLDLN---ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           +F  L D     I     + +  L   TV++IGAG G L+      GA  V   E  +  
Sbjct: 153 HFIMLNDTKRNEIYNAAIQKAVRLGSKTVLDIGAGTGILSMFAKKAGAHSVYACELSKTM 212

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           + +  D+ +   N++E    D +++   K  ++  P  I
Sbjct: 213 YELACDVVAA--NKME----DGIRLLHMKSLDLEIPKHI 245


>gi|20809060|ref|NP_624231.1| SAM-dependent methyltransferase [Thermoanaerobacter tengcongensis
           MB4]
 gi|254478728|ref|ZP_05092098.1| Methyltransferase domain family protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|20517734|gb|AAM25835.1| SAM-dependent methyltransferases [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035342|gb|EEB76046.1| Methyltransferase domain family protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 211

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 13/105 (12%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            ++L  I +     +   +++IG G G LT+ L   G  K+  ++  ++    LK   S+
Sbjct: 35  RDVLNTIYKKIPINEKKVILDIGFGTGVLTKRLYDDG-HKIYGVDFSEEM---LKISKSK 90

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            P+ + ++Q D  K   E+F NI           Y I T  + + 
Sbjct: 91  MPDAV-LVQFDFSKGLPEEFSNI--------IFDYVISTYAIHHL 126


>gi|23821962|sp|Q8TZR3|PIMT_PYRFU RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
          Length = 219

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + E +    G+ ++E+G G G    ++  +    V  IE+  +     K    +
Sbjct: 67  PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLER 126

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRII 122
                + +I  D       K F   +P  +I
Sbjct: 127 AGVKNVHVILGD-----GSKGFPPKAPYDVI 152


>gi|189346355|ref|YP_001942884.1| Methyltransferase type 12 [Chlorobium limicola DSM 245]
 gi|189340502|gb|ACD89905.1| Methyltransferase type 12 [Chlorobium limicola DSM 245]
          Length = 216

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           + + I E+      +  +E G G G LT  L      K+  I+   +   IL+  
Sbjct: 30 GVAQAILETVNPDSSMQAMEFGCGTGLLTLALAAH-VGKLTAIDTSPEMLAILQKK 84


>gi|116495566|ref|YP_807300.1| cyclopropane fatty acid synthase-like protein [Lactobacillus casei
           ATCC 334]
 gi|191639048|ref|YP_001988214.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
           BL23]
 gi|301067104|ref|YP_003789127.1| cyclopropane fatty acid synthase-like methyltransferase
           [Lactobacillus casei str. Zhang]
 gi|116105716|gb|ABJ70858.1| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
           ATCC 334]
 gi|190713350|emb|CAQ67356.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
           BL23]
 gi|300439511|gb|ADK19277.1| Cyclopropane fatty acid synthase related methyltransferase
           [Lactobacillus casei str. Zhang]
 gi|327383108|gb|AEA54584.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
           LC2W]
 gi|327386292|gb|AEA57766.1| Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus casei
           BD-II]
          Length = 393

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--S 90
           LN +  I        G T+++IG G G L          KV+ I   ++ F ++ D   S
Sbjct: 153 LNKIDHILRKLNPQPGRTLLDIGCGWGTLMLRAAKTYHLKVVGITLSKEQFKLVSDRIES 212

Query: 91  SQHPNRLEIIQDDALKVDFEKF 112
               +  E++  D  +++ E F
Sbjct: 213 EHLSDVAEVLYMDYRELNREPF 234


>gi|323705263|ref|ZP_08116838.1| O-methyltransferase family 3 [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535165|gb|EGB24941.1| O-methyltransferase family 3 [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 209

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 43  SGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEI 99
                   ++EIG   G +   MLL     K++ IEK+     I K+  + +   +R+E+
Sbjct: 47  IKIKQPENILEIGTAVGYSSIVMLLAHENCKILTIEKNMDMAEIAKENFLKASLLDRVEL 106

Query: 100 IQDDALKV 107
           I+ DAL V
Sbjct: 107 IKGDALDV 114


>gi|311278256|ref|YP_003940487.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1]
 gi|308747451|gb|ADO47203.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1]
          Length = 433

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 31  LDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           ++  + +K+  ++           V+++  G GN T  L    A  V+ +E      P L
Sbjct: 267 VNDGVNQKMVATAIDWLDIQPDDRVLDLFCGMGNFTLPLARRAA-SVVGVEG----VPAL 321

Query: 87  KDISSQHPNRLEIIQDDALKVDFEK 111
            + + Q+  R  +        + E+
Sbjct: 322 VEKAQQNAARNGLHNVTFFHENLEE 346


>gi|295114686|emb|CBL35533.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [butyrate-producing bacterium SM4/1]
          Length = 300

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL  +  ++K         G  ++EIGAG G  +  L   G R   V   D         
Sbjct: 50  FLTTMRYIEK-----YIKPGDRILEIGAGTGRYSHALAHRGYRVDAVELVDHNI-----K 99

Query: 89  ISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           I   H      + I + +AL  D   F +    I ++    Y++ +
Sbjct: 100 IFRSHITPDENVSITRGNAL--DLSMFPDSQYDITLLLGPLYHLYS 143


>gi|240169672|ref|ZP_04748331.1| phospholipid N-methyltransferase [Mycobacterium kansasii ATCC
           12478]
          Length = 231

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 15/135 (11%)

Query: 50  TVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHP-----NRLEIIQD 102
            V++ G G G  T  ++       ++ V+E +  F  +L+   +  P     +    I  
Sbjct: 49  RVLDCGPGTGAFTDRIVDHLRPGDRLDVVEINDSFVRVLQRRFATEPRWQAASNFTNIH- 107

Query: 103 DALKVDFEKFFNISSPIRIIANLPYN----IGTRLLFNWISADTWPPFWESLTLLFQKEV 158
              +V F+ F        II++LP++    I    + +  +    P    +         
Sbjct: 108 ---EVPFQYFDAAEPYDFIISSLPHSNFPAITVAEILHSYTRLLKPGGVLTYVEYLYLRQ 164

Query: 159 GERITAQKNSPHYGR 173
             R  ++       R
Sbjct: 165 IRRTLSRGTQRARIR 179


>gi|160915108|ref|ZP_02077321.1| hypothetical protein EUBDOL_01116 [Eubacterium dolichum DSM 3991]
 gi|158432907|gb|EDP11196.1| hypothetical protein EUBDOL_01116 [Eubacterium dolichum DSM 3991]
          Length = 221

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE      G  V+++G   G L           +  +E  ++   + +     H     I
Sbjct: 34  AEFMKINKGERVLDVGTNNGALLLAANRYEPSYLYGVEIQEEAAELARMNMRHHG----I 89

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
           +  D L  D+++  ++ +   ++ N PY
Sbjct: 90  VHADILCADYKE-ASLPAVDVVVCNPPY 116


>gi|126731419|ref|ZP_01747225.1| S-adenosylmethionine-diacylgycerolhomoserine-N-methlytransferase
           [Sagittula stellata E-37]
 gi|126707955|gb|EBA07015.1| S-adenosylmethionine-diacylgycerolhomoserine-N-methlytransferase
           [Sagittula stellata E-37]
          Length = 210

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 19/132 (14%)

Query: 1   MTMNNKSHSLKTILSHYKIIP----KKY--MGQNFLLDLNILKKIAESSGSLDGITVIEI 54
           MTM +    L   +  Y+ +     +KY  +G     D  ++ ++        G +V+EI
Sbjct: 1   MTMTSDHGRLMDDVYRYQRLFYDVTRKYYLLG----RDE-LIDRM----DVRPGQSVLEI 51

Query: 55  GAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113
             G G NL  +       ++  ++  +Q     +         + + Q DA   D +  F
Sbjct: 52  ACGTGRNLAALRARHPDARLYGLDISEQMLLSARRKLGAG---VVLAQADACTFDAQSLF 108

Query: 114 NISSPIRIIANL 125
            I+    I+ + 
Sbjct: 109 GIARFDHIVCSY 120


>gi|126180412|ref|YP_001048377.1| methyltransferase type 12 [Methanoculleus marisnigri JR1]
 gi|125863206|gb|ABN58395.1| Methyltransferase type 12 [Methanoculleus marisnigri JR1]
          Length = 245

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLE 98
           +++G  +G  V+E+G G G +  +         + IE  +      ++   ++   +RL 
Sbjct: 30  QAAGLREGSRVVEVGCGNGTILALWGREYGISGLGIETREDACTRAEETLRAAGLGDRLS 89

Query: 99  IIQDDALKVDFEKFFN 114
           +   DA     ++ F+
Sbjct: 90  VRCMDARSYVPDEPFD 105


>gi|85858414|ref|YP_460616.1| ribosomal protein L11 methyltransferase [Syntrophus aciditrophicus
           SB]
 gi|85721505|gb|ABC76448.1| ribosomal protein L11 methyltransferase [Syntrophus aciditrophicus
           SB]
          Length = 319

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            V+++G G G L      LGA +V+ ++ D +   I K+  + +        +D + V  
Sbjct: 182 NVLDVGTGTGILGIASAKLGAERVLCVDIDPKATEIAKENIAIN------HVEDRVSVRQ 235

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNW 137
           E+   +     +I     N+   LL   
Sbjct: 236 EEISTLKGTYNLIVA---NLTANLLIKL 260


>gi|148266300|ref|YP_001233006.1| ribosomal protein L11 methyltransferase [Geobacter uraniireducens
           Rf4]
 gi|189037696|sp|A5G9G5|PRMA_GEOUR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|146399800|gb|ABQ28433.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Geobacter
           uraniireducens Rf4]
          Length = 315

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 16/72 (22%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS----------------QH 93
           TV+++G G G L+     LGA ++  I+ D     + ++  +                  
Sbjct: 180 TVLDVGTGSGVLSIAAAKLGAERITAIDIDADAVSVAEENLALNDALPLVAVSTTALQDV 239

Query: 94  PNRLEIIQDDAL 105
           P R +I+  + L
Sbjct: 240 PGRYDIVLANIL 251


>gi|219668119|ref|YP_002458554.1| methyltransferase type 12 [Desulfitobacterium hafniense DCB-2]
 gi|219538379|gb|ACL20118.1| Methyltransferase type 12 [Desulfitobacterium hafniense DCB-2]
          Length = 242

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF-------FPILKDI 89
           +++A+S     G  V+EIG G G  T  LL  G  +V  ++   +           L++ 
Sbjct: 30  RRLAQSMFKAPGPQVLEIGCGTGQYTSWLLQEG-YEVTAVDISGKMMALAQKKIATLQET 88

Query: 90  SSQHPNRLEIIQDDALKV 107
           + Q    +     D  ++
Sbjct: 89  TPQAKP-VHWWHGDITEI 105


>gi|326386188|ref|ZP_08207812.1| generic methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209413|gb|EGD60206.1| generic methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 20/167 (11%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISS 91
             ++++       +    +E G G G   + +L    R  K+IVI+ +  F   LK    
Sbjct: 49  RTIRRVLSRVDWDNCQVFVEYGPGVGTFCRPVLDRLRRDGKLIVIDTNPDFIAYLKRTIV 108

Query: 92  QHPNRLEIIQDDALKVD-FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
            H  R   +   A  V+             +++ LP+      +   I A T        
Sbjct: 109 DH--RFSAVHGSAADVEAIVAAHGFEHADYVLSGLPFTTLPPGVGPAIMAATRRVLRPGG 166

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD---ISPHV 194
             L  +                   +++ +  +    F+   I P V
Sbjct: 167 AFLVYQYTARARA------------LMSRYFPRIDKGFEPINIPPCV 201


>gi|321442015|gb|ADW85422.1| arg methyltransferase [Poecilocampa populi]
          Length = 244

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I   +     +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAVEC-SNIVDYARKIVEANGLSGVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|312136784|ref|YP_004004121.1| methyltransferase type 11 [Methanothermus fervidus DSM 2088]
 gi|311224503|gb|ADP77359.1| Methyltransferase type 11 [Methanothermus fervidus DSM 2088]
          Length = 260

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 29  FLLD--LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           +L D   N+LKK+       D ++V++IG G G L  +L  LG   V  I+   +   I 
Sbjct: 31  WLFDAWKNLLKKV---LPEEDNLSVLDIGTGTGFLAIVLAELG-HSVTAIDVSSRMLNIA 86

Query: 87  KDISSQHPNRLEIIQDDAL 105
           K  + Q    +    +DA+
Sbjct: 87  KKRAIQRGLNINFKLEDAM 105


>gi|317049280|ref|YP_004116928.1| protein-L-isoaspartate O-methyltransferase [Pantoea sp. At-9b]
 gi|316950897|gb|ADU70372.1| protein-L-isoaspartate O-methyltransferase [Pantoea sp. At-9b]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++           V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTALLELNADAQVLEIGTGSGYQTAILAHL-VNHVYSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I T L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWAARGPFDAIIVTAAPPEIPTALIAQL 162


>gi|256822115|ref|YP_003146078.1| ubiquinone biosynthesis O-methyltransferase [Kangiella koreensis
          DSM 16069]
 gi|256795654|gb|ACV26310.1| ubiquinone biosynthesis O-methyltransferase [Kangiella koreensis
          DSM 16069]
          Length = 239

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 30 LLDLNILKK--IAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
          L D+N L+   I +++  L G  V++IG G G LT+ +   GA
Sbjct: 36 LHDINPLRLQFILDNANGLQGKKVLDIGCGGGILTEAMAKEGA 78


>gi|261419825|ref|YP_003253507.1| methyltransferase type 11 [Geobacillus sp. Y412MC61]
 gi|297530217|ref|YP_003671492.1| methyltransferase type 11 [Geobacillus sp. C56-T3]
 gi|319766640|ref|YP_004132141.1| methyltransferase type 11 [Geobacillus sp. Y412MC52]
 gi|261376282|gb|ACX79025.1| Methyltransferase type 11 [Geobacillus sp. Y412MC61]
 gi|297253469|gb|ADI26915.1| Methyltransferase type 11 [Geobacillus sp. C56-T3]
 gi|317111506|gb|ADU93998.1| Methyltransferase type 11 [Geobacillus sp. Y412MC52]
          Length = 232

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 9/132 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K+I          +V+++G G G     +       V  I+         K   +   
Sbjct: 23  LTKQILRKLKIDRSTSVLDVGCGTGQTAAYIAEQYGANVTAIDIHPTMIAKAKQRFAAKA 82

Query: 95  NRLEIIQD--DALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
             + + +   +AL      F   +S  +    +LP  +    +   +  D      E+  
Sbjct: 83  VSVRLHRASVEALPFPAGTFDLALSESVLAFVSLPNALAE--IRRVLKNDGLFVGIEACH 140

Query: 152 LLF----QKEVG 159
                  QK++ 
Sbjct: 141 ERLTAAEQKQIA 152


>gi|254486657|ref|ZP_05099862.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter sp.
           GAI101]
 gi|214043526|gb|EEB84164.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter sp.
           GAI101]
          Length = 402

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 13/114 (11%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             + +  G + G  V+EIG G G   +        KV  +   ++ F   K+   +    
Sbjct: 175 ASMVDQMGVVAGDHVLEIGCGWGGFAEYAAKERGLKVTCLTISKEQFNYAKERIEKAG-- 232

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
                 D ++   + + + +            I +  +F  +    WP ++ ++
Sbjct: 233 ----LSDMVEFKLQDYRDETGVYD-------GIASIEMFEAVGEKYWPSYFNTV 275


>gi|195126140|ref|XP_002007532.1| GI12338 [Drosophila mojavensis]
 gi|193919141|gb|EDW18008.1| GI12338 [Drosophila mojavensis]
          Length = 454

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 25/110 (22%)

Query: 11  KTILSHYKIIPKKYMGQNFLL-DLNILKKIAES------------SGSLDGITVIEIGAG 57
           ++     +I+  K +G N L+ D   L+ IAES              + +G  +  +G G
Sbjct: 149 RSPFQKIQILHSKTLG-NMLILDE--LQNIAESDLIYTETLMGRGIENYEGKEICILGGG 205

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
            G L   LL    + V+++E D        ++  Q  N+ L  I  D L+
Sbjct: 206 DGALLYELLKEKPKHVVMLEID--------ELVMQACNKYLSSICGDVLE 247


>gi|163794519|ref|ZP_02188490.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199]
 gi|159180243|gb|EDP64766.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199]
          Length = 326

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            E+    DG   ++   G G  T+ LLT     V  I++D +       ++ +   RL  
Sbjct: 17  VEALAPRDGGRYVDGTFGVGGYTRALLTAANCTVYAIDRDPEAIRRAGILAQEFGGRLIA 76

Query: 100 IQDDALKVDF 109
           I+     +D 
Sbjct: 77  IEGRFGAMDQ 86


>gi|126728727|ref|ZP_01744542.1| protein-L-isoaspartate O-methyltransferase [Sagittula stellata
           E-37]
 gi|126710657|gb|EBA09708.1| protein-L-isoaspartate O-methyltransferase [Sagittula stellata
           E-37]
          Length = 213

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 22/138 (15%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + ++        V+E+G G G     +L+  AR++  +++ ++     + +   
Sbjct: 63  PSVVGLMTQALQVGPRDKVLEVGTGSGY-QAAILSQLARRIYTVDRHKRLVAAARKVF-- 119

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
                     DAL++     F       +    P++   R+L    + D   P       
Sbjct: 120 ----------DALELANITAFTADGSFGLADQAPFD---RILVTAAAEDPPGPLL----- 161

Query: 153 LFQKEVGERITAQKNSPH 170
             Q ++G  +        
Sbjct: 162 -AQLKIGGIMVVPVGQSD 178


>gi|153951638|ref|YP_001398721.1| putative methyltransferase [Campylobacter jejuni subsp. doylei
          269.97]
 gi|152939084|gb|ABS43825.1| putative methyltransferase [Campylobacter jejuni subsp. doylei
          269.97]
          Length = 257

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLT 67
           +  HY   P             +L+K+             + ++E+GAG G LT+ML  
Sbjct: 8  EVAKHYHNRPAYS--------PFLLEKLVACINDKNKNLKDLNIVEVGAGTGKLTKMLGE 59

Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPN 95
          +   ++  +E +       +  +    N
Sbjct: 60 IFGCQISAVEPNDNMREEGQKFTQNLSN 87


>gi|120401225|ref|YP_951054.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium vanbaalenii
           PYR-1]
 gi|152061094|sp|A1T1J8|TRMB_MYCVP RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|119954043|gb|ABM11048.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 266

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDD 103
                V+EIG G G  T  +        V+ +E  ++    +L  +  +    + +I+ D
Sbjct: 89  RHAPVVLEIGCGTGTSTLAMAQAEPDIDVVAVEVYRRGLAQLLSAMDREGVTNIRLIRGD 148

Query: 104 ALKVDFEKFFNIS 116
            + V    F   S
Sbjct: 149 GVDVLTHMFGPDS 161


>gi|37719600|gb|AAR01904.1| putative methyltransferase [Campylobacter jejuni]
          Length = 257

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLT 67
           +  HY   P             +L+K+             + ++E+GAG G LT+ML  
Sbjct: 8  EVAKHYHNRPAYS--------PFLLEKLVACINDKNKNLKDLNIVEVGAGTGKLTKMLGE 59

Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPN 95
          +   ++  +E +       +  +    N
Sbjct: 60 IFGCQISAVEPNDNMREEGQKFTQNLSN 87


>gi|324327480|gb|ADY22740.1| hypothetical protein YBT020_17550 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 239

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     +      KV  +EK++      KD  S   
Sbjct: 25  LTKQLLAQLPFRHGANVLEIGCGTGKTAAYMAKNFGYKVTAVEKNEIMIQKAKDRWSFEG 84

Query: 95  NRLEIIQD 102
             +++I+ 
Sbjct: 85  IDIQLIEG 92


>gi|319740475|gb|ADV60531.1| arg methyltransferase [Prismosticta fenestrata]
          Length = 244

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI IE         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAIEC-SNIVDYARKIIEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|229815922|ref|ZP_04446245.1| hypothetical protein COLINT_02977 [Collinsella intestinalis DSM
           13280]
 gi|229808475|gb|EEP44254.1| hypothetical protein COLINT_02977 [Collinsella intestinalis DSM
           13280]
          Length = 351

 Score = 36.7 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDI 89
           A  +    G TV  IGAGP  LT M+     G   +I I+ D     + ++ 
Sbjct: 158 ASIAEIEPGSTVAVIGAGPVGLTTMMCARLHGPAHIIAIDIDPARLALARER 209


>gi|289742457|gb|ADD19976.1| spermidine synthase [Glossina morsitans morsitans]
          Length = 365

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 27/111 (24%)

Query: 11  KTILSHYKIIPKKYMGQNFLL-DLNILKKIAESSGSLDGITVI----------EI---GA 56
           ++     +I+  K +G N L+ D   L+ IAES   +   T++          EI   G 
Sbjct: 147 RSPFQKIQIMHSKTLG-NMLILDE--LQNIAES-DLIYTETLMGRGNENYEGKEICILGG 202

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALK 106
           G G L   LL    + V+++E D        ++  Q  N+ L  I  D L+
Sbjct: 203 GDGALLYELLKENPKHVVMLEID--------ELVMQACNKYLNSICGDVLE 245


>gi|289771397|ref|ZP_06530775.1| O-methyltransferase [Streptomyces lividans TK24]
 gi|289701596|gb|EFD69025.1| O-methyltransferase [Streptomyces lividans TK24]
          Length = 446

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +  ++G TV+E+G G G  T +     G+  V  +E D        D          + +
Sbjct: 169 ADVVEGHTVLEVGTGTGYSTALACERLGSSHVSSVEVDAVRLEGAADALYGCGYTPVLAR 228

Query: 102 DDALK-VDFEKFFN 114
            D L     E +F+
Sbjct: 229 ADGLYGYWPEAWFD 242


>gi|289622370|emb|CBI51548.1| unnamed protein product [Sordaria macrospora]
          Length = 281

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNL 61
            +  KI +         V++IG G G L
Sbjct: 23 PKLATKIVQWLDPQKDDVVLDIGCGDGVL 51


>gi|268611293|ref|ZP_06145020.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Ruminococcus flavefaciens FD-1]
          Length = 228

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQH 93
           +L  I + +   +    I++G G G +   +L       +  +E +       K  + + 
Sbjct: 69  VLDSIFKDASIAENDRFIDVGCGKGRVIAYMLWKKYPCSLTGVELNDSVASYAKKWTQKF 128

Query: 94  PNRLEIIQDDALKVDFEKF--------FNISSPIRIIANLPYNIGTRL 133
            N   II   A  +D+  +        F        I  L   +   +
Sbjct: 129 DNT-NIISGSAFDLDYNDYTILFMGRPFEPEVFYTFIDKLENELTHPV 175


>gi|241888749|ref|ZP_04776055.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE/COQ5
           [Gemella haemolysans ATCC 10379]
 gi|241864425|gb|EER68801.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE/COQ5
           [Gemella haemolysans ATCC 10379]
          Length = 251

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 13/101 (12%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L   ++ P    G NFL                 G  ++E+    G     L      K 
Sbjct: 13  LGKTRLRPGGIKGTNFLF---------AHIEFKKGDRILEVACNRGVNLLALAKQYP-KT 62

Query: 74  IVIEKDQQFFPILKDISSQHPNRL---EIIQDDALKVDFEK 111
             I  D     IL+       N L   E I+ DA  ++F +
Sbjct: 63  TFIGIDVDKVAILEAQLEAMKNNLNNIEFIRADAFHLEFPE 103


>gi|229826389|ref|ZP_04452458.1| hypothetical protein GCWU000182_01761 [Abiotrophia defectiva ATCC
           49176]
 gi|229789259|gb|EEP25373.1| hypothetical protein GCWU000182_01761 [Abiotrophia defectiva ATCC
           49176]
          Length = 204

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVD 108
           +EIGAG G L  +L    A+       D         LK+  +     + I  +D L + 
Sbjct: 45  LEIGAGSGTLALLLAKHFAKID---GIDSSAGMREEFLKNKEAFSAENVNIYDEDFLNIT 101

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
            EK+  I S       +      +LL  +++        +  T+
Sbjct: 102 DEKYDLIYSHKVFHHIVDVENELQLLKKFLAPKGKLYLMDFCTI 145


>gi|296120330|ref|YP_003628108.1| methyltransferase [Planctomyces limnophilus DSM 3776]
 gi|296012670|gb|ADG65909.1| methyltransferase [Planctomyces limnophilus DSM 3776]
          Length = 215

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           G  V++I  G G+L    L+ GA   + IE+D + F +LK
Sbjct: 41 KGQRVLDIFCGTGSLGLEALSRGADTCVFIEQDHRAFELLK 81


>gi|256830203|ref|YP_003158931.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579379|gb|ACU90515.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 658

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           + I + +G      V+EIG G G      +     +V  I  
Sbjct: 422 QAIIDMAGIGADDHVLEIGCGWGGFALEAVRRTGCRVTGITI 463


>gi|219850991|ref|YP_002465423.1| protein-L-isoaspartate O-methyltransferase [Methanosphaerula
           palustris E1-9c]
 gi|219545250|gb|ACL15700.1| protein-L-isoaspartate O-methyltransferase [Methanosphaerula
           palustris E1-9c]
          Length = 215

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  +           V+EIG G G     +L L A  VI IE+     P++   + +
Sbjct: 67  PYIVALMTALLELKPTDRVLEIGTGSGY-QAAILGLLAETVISIER----IPVVAARAEE 121

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
           H  ++ +   + L  D    ++  +P   I
Sbjct: 122 HLRQIGLTNVEVLVKDGTDGYSPGAPYDAI 151


>gi|195051826|ref|XP_001993178.1| GH13219 [Drosophila grimshawi]
 gi|193900237|gb|EDV99103.1| GH13219 [Drosophila grimshawi]
          Length = 295

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF----PILKDISSQHPN 95
             ++  LDG  ++++G G G LT+ L  LGA +V  I+  ++        L + S +  +
Sbjct: 91  INTTKVLDGQRILDVGCGAGVLTEQLARLGA-QVTGIDLGEELVKAARAHLSNCSPELSS 149

Query: 96  RLE 98
           R++
Sbjct: 150 RVQ 152


>gi|221060969|ref|XP_002262054.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
           knowlesi strain H]
 gi|193811204|emb|CAQ41932.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
           knowlesi strain H]
          Length = 316

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 5/123 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHP-- 94
           I     +L    +IE G G G LT  L +    K  V   E +++ +  +K+  S     
Sbjct: 88  ICLLCNALPNKKIIEAGTGTGCLTYALASCVLPKGIVHTFEYNEERYLEVKNEFSNFENV 147

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            N ++    D +   F +F         +      +    +   +        +      
Sbjct: 148 KNNIQFHHKDVINDSFVQFEPEEIDSVFLDMPNPWLCVPSIKRVLKERGSFVIFLPCIEQ 207

Query: 154 FQK 156
             K
Sbjct: 208 VYK 210


>gi|157964706|ref|YP_001499530.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5]
 gi|167011838|sp|A8F247|RSMH_RICM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157844482|gb|ABV84983.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5]
          Length = 307

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 30/69 (43%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L ++ E+    DG + ++   G G  ++ +L      V  +++D       ++I   +  
Sbjct: 10  LNEMLEALSPKDGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQNYGE 69

Query: 96  RLEIIQDDA 104
           R + ++ + 
Sbjct: 70  RFDFVETNF 78


>gi|152990876|ref|YP_001356598.1| hemolysin A [Nitratiruptor sp. SB155-2]
 gi|151422737|dbj|BAF70241.1| hemolysin A [Nitratiruptor sp. SB155-2]
          Length = 234

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 20/133 (15%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +FL   + +      +  +    V+++GA  G  TQ+L   GA+KVI ++        L 
Sbjct: 64  HFL---DTID-----ASFIKDAEVLDVGASTGGFTQILCEYGAKKVIALDVGS---GQLH 112

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
                  N +++   D    + + F  ++  +  I+ L      +++ +    D     +
Sbjct: 113 PTIKSKQNVIDMSNTDIRTFEHDPFDIVTCDVSFISVL------KIVHHI---DRLSKKY 163

Query: 148 ESLTLLFQKEVGE 160
             +    Q EVG+
Sbjct: 164 IIILFKPQFEVGK 176


>gi|111022745|ref|YP_705717.1| trans-aconitate 2-methyltransferase [Rhodococcus jostii RHA1]
 gi|110822275|gb|ABG97559.1| trans-aconitate 2-methyltransferase [Rhodococcus jostii RHA1]
          Length = 258

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPN 95
           + IAE +       V+++G G G +T  +        V+ ++   +     +        
Sbjct: 22  ESIAELA-LAGNERVLDVGCGDGFVTLRIAERLPGGSVVGVDASPRMIAKAQSRVLPDGT 80

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
           R E    DA  + F+  F+++     +  +P
Sbjct: 81  RAEFRIADARALPFDGEFDVAVSFNALHWVP 111


>gi|90412791|ref|ZP_01220791.1| putative HemK protein, Methylase of polypeptide chain release
           factors [Photobacterium profundum 3TCK]
 gi|90326150|gb|EAS42577.1| putative HemK protein, Methylase of polypeptide chain release
           factors [Photobacterium profundum 3TCK]
          Length = 282

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHP 94
           L+KI          TV+++G G G +   +       +V  I       P   ++++++ 
Sbjct: 107 LEKI-----PTQACTVLDLGTGTGAIALAIASERNDAQVTGI----DLRPEAAELAAENG 157

Query: 95  NRLEIIQDDALK-VDFEKFFNISSPIRIIANLPY 127
            RL I     L    +    +      I++N PY
Sbjct: 158 QRLNIQNARFLAGSWYTPLASDELFAVIVSNPPY 191


>gi|21221321|ref|NP_627100.1| hypothetical protein SCO2872 [Streptomyces coelicolor A3(2)]
 gi|256787501|ref|ZP_05525932.1| hypothetical protein SlivT_23683 [Streptomyces lividans TK24]
 gi|7635978|emb|CAB88813.1| hypothetical protein SCE6.09 [Streptomyces coelicolor A3(2)]
          Length = 410

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +  ++G TV+E+G G G  T +     G+  V  +E D        D          + +
Sbjct: 133 ADVVEGHTVLEVGTGTGYSTALACERLGSSHVSSVEVDAVRLEGAADALYGCGYTPVLAR 192

Query: 102 DDALK-VDFEKFFN 114
            D L     E +F+
Sbjct: 193 ADGLYGYWPEAWFD 206


>gi|325568306|ref|ZP_08144673.1| ribosomal protein L11 methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158075|gb|EGC70228.1| ribosomal protein L11 methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 315

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      ++  + +P  + + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASKYLGAKDVFAYDLDEVAVRSAQENMAMNPIAHDVTVQAN 232

Query: 103 DALK 106
           D L+
Sbjct: 233 DLLQ 236


>gi|322388055|ref|ZP_08061661.1| methyltransferase domain protein [Streptococcus infantis ATCC
           700779]
 gi|321141076|gb|EFX36575.1| methyltransferase domain protein [Streptococcus infantis ATCC
           700779]
          Length = 196

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 30/174 (17%)

Query: 25  MGQN--FLLDLNI-LKKIA--------ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           +GQ   FL D  +  KK+                   ++++G G G +   L+     + 
Sbjct: 24  LGQKMTFLTDAGVFSKKMIDFGSQLLLRCLDVEKDEKILDVGCGYGPIGLSLVKAYGAQA 83

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++ + +   + +  + ++  +  I Q +  +    +F        +I+N P   G ++
Sbjct: 84  TMVDINNRALDLAQQNAVKNNVQATIFQSNIYEQVEGQF------DHVISNPPIRAGKQV 137

Query: 134 LFNWISAD-TWPPFWESLTLLFQK------------EVGERITAQKNSPHYGRL 174
           +   I     +      LT++ QK            EV       K    Y  L
Sbjct: 138 VHEIIEKSIDYLKDGGDLTIVIQKKQGAPSAKNKMEEVFGNCEVVKKDKGYYIL 191


>gi|317471892|ref|ZP_07931227.1| ribosomal protein L11 methyltransferase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900665|gb|EFV22644.1| ribosomal protein L11 methyltransferase [Anaerostipes sp.
           3_2_56FAA]
          Length = 321

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 23/45 (51%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
                  ++++G G G L+ + L LGA+K ++ + D +     ++
Sbjct: 171 EIHPETVMLDVGCGSGILSIIALKLGAKKTVMTDIDPRAVKAAEE 215


>gi|312793762|ref|YP_004026685.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180902|gb|ADQ41072.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 304

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 35/68 (51%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G+ V+++G G G L        A++V+ ++ D+    + ++ +  +   +EI ++D 
Sbjct: 166 VKPGMDVLDVGTGSGILAIAAKKFLAKRVLAVDIDEVAVKVAEENARLNGVEIEIKKNDL 225

Query: 105 LKVDFEKF 112
           ++   EKF
Sbjct: 226 VEGIEEKF 233


>gi|297560278|ref|YP_003679252.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844726|gb|ADH66746.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 419

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 43  SGSLDGITVIEIGAG--PGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLE 98
           +    G+ V+E+G+G     L   ++   A  V  ++ D       +     + + +R+E
Sbjct: 93  ARLRPGMRVLEVGSGGYNAALAAEVVG-PAGSVTSLDIDPAVIDRARTHLTQAGYADRVE 151

Query: 99  IIQDDA 104
           ++  DA
Sbjct: 152 LVVGDA 157


>gi|284041606|ref|YP_003391946.1| protein-L-isoaspartate O-methyltransferase [Conexibacter woesei DSM
           14684]
 gi|283945827|gb|ADB48571.1| protein-L-isoaspartate O-methyltransferase [Conexibacter woesei DSM
           14684]
          Length = 206

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISS 91
             ++ ++ E         V+++G G G     LL    R V  IE+ ++     + ++ +
Sbjct: 58  PLVVARMLEVLDLGPDDDVLDVGTGSGY-HAALLARLVRHVWTIERHRRLSAAAEGNLRA 116

Query: 92  QHPNRLEIIQDD 103
                + ++  D
Sbjct: 117 AGVENVTVLVGD 128


>gi|257056215|ref|YP_003134047.1| tRNA (adenine-58-N(1)-) methyltransferase [Saccharomonospora
           viridis DSM 43017]
 gi|256586087|gb|ACU97220.1| tRNA (adenine-58-N(1)-) methyltransferase [Saccharomonospora
           viridis DSM 43017]
          Length = 273

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDISSQHPNRL 97
               G  V+E GAG G LT  LL        V   E            ++    + P+  
Sbjct: 95  DIFPGARVLEAGAGSGALTCSLLRAVGPEGSVTSYEVRADHAEHAVRNVEKFFGERPSNW 154

Query: 98  EIIQDD 103
            +   D
Sbjct: 155 TLHVAD 160


>gi|237785506|ref|YP_002906211.1| putative tRNA (1-methyladenosine) methyltransferase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758418|gb|ACR17668.1| putative tRNA (1-methyladenosine) methyltransferase
           [Corynebacterium kroppenstedtii DSM 44385]
          Length = 278

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 6/98 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEK-DQQFFPIL---KDI 89
             +I        G  V+E GAG G LT  LL     +  V   E  D      L    + 
Sbjct: 88  AAQIVIEGDIFPGARVLEAGAGSGALTLSLLRAVGERGTVFSYEIRDDHLKYALSNVSEF 147

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
               P+  +    D   V  +        I +    P+
Sbjct: 148 MGSTPDNWQPRLGDLRDVTVDDLDGPVDRIILDMLEPW 185


>gi|225569061|ref|ZP_03778086.1| hypothetical protein CLOHYLEM_05140 [Clostridium hylemonae DSM
           15053]
 gi|225161860|gb|EEG74479.1| hypothetical protein CLOHYLEM_05140 [Clostridium hylemonae DSM
           15053]
          Length = 410

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
               G      + +IGAG G+++ +  L  G  KV  IEK+ +   +L++   +   + +
Sbjct: 246 IGKLGLTKDAVLYDIGAGTGSVSVEAALCSGEIKVYAIEKNPEAVRLLEENRRRFLCDNI 305

Query: 98  EIIQDDA 104
           EII+  A
Sbjct: 306 EIIEGTA 312


>gi|261408100|ref|YP_003244341.1| type 11 methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261284563|gb|ACX66534.1| Methyltransferase type 11 [Paenibacillus sp. Y412MC10]
          Length = 240

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  ++E+G G G     L  +G  +V  I+ ++      +  +      +E +Q D 
Sbjct: 32  IQPGSRILEVGCGTGRTACHLSEMG-YQVTAIDLNENMIKKARARAEAMGMDVEFLQADV 90

Query: 105 LKVDFEK 111
             + FE 
Sbjct: 91  CALPFED 97


>gi|158293995|ref|XP_315341.4| AGAP005325-PA [Anopheles gambiae str. PEST]
 gi|157015359|gb|EAA11793.4| AGAP005325-PA [Anopheles gambiae str. PEST]
          Length = 374

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 26/134 (19%)

Query: 11  KTILSHYKIIPKKYMGQNFLL-DLNILKKIAESSGSLDGITVI---------EI---GAG 57
           ++     +I+  + +G N L+ D   L+ IAE+        +          EI   G G
Sbjct: 148 RSEFQKIQIVHSRSLG-NMLVLDE--LQNIAEADLIYTETLMCRGKEDYAGKEICILGGG 204

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKD---------ISSQHPNRLEIIQDDALKVD 108
            G L   LL  G + V+++E D+                 +  +  +  EII  D + V 
Sbjct: 205 DGALLYELLKEGPKMVVMLEIDEIVMQACNKYMNTICGDVLEKRTDDNYEIIVGDCM-VY 263

Query: 109 FEKFFNISSPIRII 122
             K+         +
Sbjct: 264 LRKYIKEGRKFDYV 277


>gi|83942634|ref|ZP_00955095.1| protein-L-isoaspartate O-methyltransferase [Sulfitobacter sp.
           EE-36]
 gi|83953875|ref|ZP_00962596.1| protein-L-isoaspartate O-methyltransferase [Sulfitobacter sp.
           NAS-14.1]
 gi|83841820|gb|EAP80989.1| protein-L-isoaspartate O-methyltransferase [Sulfitobacter sp.
           NAS-14.1]
 gi|83846727|gb|EAP84603.1| protein-L-isoaspartate O-methyltransferase [Sulfitobacter sp.
           EE-36]
          Length = 219

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + ++        V+E+G G G     +L+  AR+V  I++ ++     + I   
Sbjct: 68  PSVVALMTQALDVSSRDKVLEVGTGSGY-QAAILSKLARRVYTIDRHRRLVVEARQIFED 126

Query: 93  HP-NRLEIIQDD 103
              + +  I  D
Sbjct: 127 LALSNITAIIGD 138


>gi|312132197|ref|YP_003999537.1| methyltransferase small [Leadbetterella byssophila DSM 17132]
 gi|311908743|gb|ADQ19184.1| methyltransferase small [Leadbetterella byssophila DSM 17132]
          Length = 229

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 11/126 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKD--ISSQHPNRL 97
               + D    ++IG G G L+ M+       +I  +E D        +  + S   +R+
Sbjct: 27  ALIEASDAKRALDIGTGTGLLSLMVAQRNPSLIIDAVEIDSGAVQDATENVLDSPFASRI 86

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYN---IGTRLLFNWISADTWPPFWESLTLLF 154
           ++  +D      + F        I  N P+    + +      ++       W+ ++   
Sbjct: 87  KVFYEDI-----KDFVPKEKYEVIFCNPPFYENRLSSPDPKKNLAHHASLLKWKEVSECA 141

Query: 155 QKEVGE 160
           ++ + E
Sbjct: 142 KRLLAE 147


>gi|302387451|ref|YP_003823273.1| Methyltransferase type 11 [Clostridium saccharolyticum WM1]
 gi|302198079|gb|ADL05650.1| Methyltransferase type 11 [Clostridium saccharolyticum WM1]
          Length = 224

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           T ++IG G G L+  LL+  A+KVI ++   +     +  S+   + +E I  + L +++
Sbjct: 43  TCLDIGCGKGELS-ALLSKNAKKVIAVDLADKMIEYAR--SNNAADNIEYICGNILDMNY 99

Query: 110 E-KFFNISSPIRIIANLPYN 128
               F+I        +LPY+
Sbjct: 100 ATSSFDIIISTATAHHLPYD 119


>gi|296393499|ref|YP_003658383.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985]
 gi|296180646|gb|ADG97552.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985]
          Length = 319

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 33  LNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKD 88
             +L ++ +            +++   G G  T+ LL    A +V+ +++D++   + + 
Sbjct: 10  PVLLHRVVQLLAPALSAPNPVLVDATLGLGGHTKALLERFPALRVVGVDRDEKAIEVARA 69

Query: 89  ISSQHPNRLEIIQDDALKVDFE 110
                 +R+  +     +V+  
Sbjct: 70  RLGALADRVRFVHARFDEVEHA 91


>gi|284009169|emb|CBA76214.1| 23S rRNA (uracil-5-)-methyltransferase [Arsenophonus nasoniae]
          Length = 466

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 27  QNFL-LDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           QNF+ ++  I KK+   +           V+++  G GN T  +       V+ +E   +
Sbjct: 292 QNFIQVNPEINKKMVAQALDWLALEPKDRVLDLFCGMGNFTLPIACH-VHSVVGVEGVTE 350

Query: 82  FFPILKDISSQHPNRL---EIIQDDA-LKVDFEKFFNIS 116
                +   +   NRL   E  Q D  L +D + +  + 
Sbjct: 351 LVA--QGRYNASLNRLTNAEFYQADLELAIDCQPWAKMG 387


>gi|262279612|ref|ZP_06057397.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259963|gb|EEY78696.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 349

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLE 98
           +   +G  ++E+G G G+LT  +     R  I            K I  Q      N +E
Sbjct: 117 AQLKNGQHILELGCGWGSLTLWMAENYPRSQITAV--SNSATQKKHILGQAKLKGLNNIE 174

Query: 99  IIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD--TWPPFWESLTLLF 154
           ++  D   L++D ++F  + S         Y      +  W+ AD   W   +    L +
Sbjct: 175 VVTCDVNVLELDQDQFDRVVSVEMFEHVRNYQRLFEKIQGWLKADGLLWCHIFCHRFLHY 234

Query: 155 QKEV 158
             EV
Sbjct: 235 PFEV 238


>gi|261403248|ref|YP_003247472.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
 gi|261370241|gb|ACX72990.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
          Length = 265

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
              G  + ++G G G L  M+    A+KV  IE D   +   K+    +    +E+I+ D
Sbjct: 37  LKGGEVIYDLGTGSGIL-AMMSAKKAKKVYAIELDPFTYEYAKENVYINGFKNIEVIEGD 95

Query: 104 ALKVDFEKFFNI 115
           A   +F++  ++
Sbjct: 96  ASLYNFKEKADV 107


>gi|170732241|ref|YP_001764188.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia cenocepacia
           MC0-3]
 gi|169815483|gb|ACA90066.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia cenocepacia
           MC0-3]
          Length = 258

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 12/123 (9%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        V+EIG G G  T  +         + +E  +     +LK I  Q  + + 
Sbjct: 77  DAIFGRSAPRVLEIGFGMGASTAEIAAHRPGDDFLGVEVHEPGVGALLKLIGEQGLSNIR 136

Query: 99  IIQDDALKV----------DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           IIQ DA++V          D    F      +   +    I   L+ +  S      +  
Sbjct: 137 IIQHDAVEVLEHMIAPASLDGMHIFFPDPWHKARHHKRRLIQPPLVAHLASRLKPGAYLH 196

Query: 149 SLT 151
             T
Sbjct: 197 CAT 199


>gi|21220475|ref|NP_626254.1| hypothetical protein SCO1993 [Streptomyces coelicolor A3(2)]
 gi|5689886|emb|CAB52049.1| hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 228

 Score = 36.7 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 14/132 (10%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
            I  ++   +G  ++E+G+G G +T  LL  G   V  ++   +   +L+ +        
Sbjct: 33  DIVAAAVP-EGARILELGSGVGRMTHPLLERGFG-VTAVD---ESAEMLERVRGA----- 82

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
             I      +D  + F+      ++A+   + G   +   +         E   +L Q+E
Sbjct: 83  RTICSPIEDLDLGERFDA----VMLASFLVHAGDVEVRRGLLRTCARHVAEDGCVLIQRE 138

Query: 158 VGERITAQKNSP 169
             +  T      
Sbjct: 139 GADYHTNLPRER 150


>gi|319740469|gb|ADV60528.1| arg methyltransferase [Nataxa flavescens]
          Length = 244

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|297570557|ref|YP_003691901.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926472|gb|ADH87282.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 676

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRL 97
           AE++G   G  VIEIG G G     +      +V  +   Q+    ++         NR+
Sbjct: 449 AEAAGIKAGQDVIEIGCGWGEFAIFMARNYGCRVHAVTISQKQHQHVEQRVKSQGLSNRI 508

Query: 98  EIIQDDALKV 107
            +I +D  K+
Sbjct: 509 NVILEDYRKL 518


>gi|255527847|ref|ZP_05394695.1| O-methyltransferase family 3 [Clostridium carboxidivorans P7]
 gi|296185448|ref|ZP_06853858.1| O-methyltransferase [Clostridium carboxidivorans P7]
 gi|255508458|gb|EET84850.1| O-methyltransferase family 3 [Clostridium carboxidivorans P7]
 gi|296050282|gb|EFG89706.1| O-methyltransferase [Clostridium carboxidivorans P7]
          Length = 215

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 43  SGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLE 98
                 + ++E+G   G  ++   + + G  ++  IE+D++     +    ++   ++++
Sbjct: 51  INIKKPLKILELGTAIGYSSILMNISSKGNSEITTIERDEKMIAAAQRNIEKYGFADKIK 110

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           IIQ D L+V  +                YN         ++ D
Sbjct: 111 IIQGDCLEVLKQLNDKYDLIFMDAGKGHYNHFLPECMRLLNKD 153


>gi|170571310|ref|XP_001891678.1| hypothetical protein [Brugia malayi]
 gi|158603678|gb|EDP39514.1| conserved hypothetical protein [Brugia malayi]
          Length = 219

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 12/92 (13%)

Query: 27  QNF---L----LDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           QNF   L      + + + I  +       DG TV ++G GPG L    + LGA   + I
Sbjct: 17  QNFKLQLEQYSTSVELAEAILNAVAEEGCMDGCTVADLGCGPGILLLGAVKLGASYGLGI 76

Query: 77  EKDQQFFPILKDISSQHP--NRLEIIQDDALK 106
           E D++   I ++   +    N +++I  D  K
Sbjct: 77  EIDEEAINICRNNIERCDLGNVVDVICLDVTK 108


>gi|122936744|dbj|BAF45189.1| Trans-aconitate 2-methyltransferase [uncultured bacterium]
          Length = 264

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95
            KI           ++++G G G LT  L  L    KV+ ++  +      K I  +   
Sbjct: 22  NKIISELSLKGTEKILDLGCGDGVLTANLAQLVPNGKVVGVDASEGMIKEAKKIQLE--- 78

Query: 96  RLEIIQDDA 104
            L  I+ D 
Sbjct: 79  NLTFIKADI 87


>gi|148269317|ref|YP_001243777.1| glycosyl transferase family protein [Thermotoga petrophila RKU-1]
 gi|147734861|gb|ABQ46201.1| glycosyl transferase, family 2 [Thermotoga petrophila RKU-1]
          Length = 991

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 11/141 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
            L+   ++E+G G G  +  L    A  V  I+ D     +   IS  +    +E    D
Sbjct: 512 ILNKARILEVGTGTGAFSIELALREAD-VTGIDIDPTSIELAIRISKDYNVENVEFKVGD 570

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD--------TWPPFWESLTLLFQ 155
             K+  E F      I     +  +     +   +              P+  S      
Sbjct: 571 GFKLT-ESFKPQEFDIAFNMGVVEHFKDDDIIKMLKQMGEVAKFVVVGVPYSGSFVYKTA 629

Query: 156 KEVGERITAQKNSPHYGRLSV 176
           KE  +++ A +       L++
Sbjct: 630 KETAQKLGAWEYGFERDFLTL 650


>gi|84502666|ref|ZP_01000785.1| methyltransferase, FkbM family protein [Oceanicola batsensis
           HTCC2597]
 gi|84389061|gb|EAQ01859.1| methyltransferase, FkbM family protein [Oceanicola batsensis
           HTCC2597]
          Length = 253

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102
              G  V+E+GAG G ++ ++    A  +V   E +    P ++ + S++  + + +   
Sbjct: 74  VRAGDRVVELGAGIGYMSAIVAKNCAPSQVHAFEANPALIPCIRRVHSENALDNITVHHA 133


>gi|325183310|emb|CCA17768.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 234

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
          GQ F+L  + L+ + E +  +DG  +++IGAG GN+T+ L     +KV+  E        
Sbjct: 23 GQMFVLSKSQLRSLLECNEPIDG-KLLDIGAGDGNITEKL-RTCVKKVMTTEISGPMVAR 80

Query: 86 LKDI 89
          LK  
Sbjct: 81 LKAR 84


>gi|322383636|ref|ZP_08057387.1| ribosomal protein L11 methyltransferase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151848|gb|EFX44791.1| ribosomal protein L11 methyltransferase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 333

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPN 95
           KI E      G  VI++G G G L+     LGA  V+ I+ D        +    +   +
Sbjct: 177 KILEQV-VRGGEDVIDVGTGSGILSIAAAKLGAEHVLAIDLDPVAVKSAGENSKLNGMQS 235

Query: 96  RLEIIQDDAL----KVDFEKFFNISSPIRII 122
           R+ + Q D L      +     N+  P++I+
Sbjct: 236 RIMVRQSDLLGILEHSEKRDELNVKMPVQIV 266


>gi|317132015|ref|YP_004091329.1| Methyltransferase type 11 [Ethanoligenens harbinense YUAN-3]
 gi|315469994|gb|ADU26598.1| Methyltransferase type 11 [Ethanoligenens harbinense YUAN-3]
          Length = 253

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L  +  +    +   V +IGAG G L++ LL      V  +E +       +      P
Sbjct: 25  LLDYLIAAGNLPEHALVTDIGAGTGKLSEQLLARK-LHVTAVEPNDDMRGEARARLDGRP 83

Query: 95  NRLEIIQDDA 104
               I+   A
Sbjct: 84  G-FRILNGTA 92


>gi|227525081|ref|ZP_03955130.1| possible DNA (cytosine-5-)-methyltransferase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227087758|gb|EEI23070.1| possible DNA (cytosine-5-)-methyltransferase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 143

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           G G LT+ L          IE D++      +I + +   ++II  D  KV    F  + 
Sbjct: 11  GCGGLTEGLEQSEINVEYAIELDRKI----SNIYATNHPNVKIINSDIQKVTDTTFKQME 66

Query: 117 SPIRIIANLP 126
           +   +    P
Sbjct: 67  NVNLVAGCPP 76


>gi|261342191|ref|ZP_05970049.1| protein-L-isoaspartate O-methyltransferase [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315524|gb|EFC54462.1| protein-L-isoaspartate O-methyltransferase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPESRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I   LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWKARAPFDAIIVTAAPPEIPAALLSQL 162


>gi|237654104|ref|YP_002890418.1| ribosomal protein L11 methyltransferase [Thauera sp. MZ1T]
 gi|237625351|gb|ACR02041.1| ribosomal protein L11 methyltransferase [Thauera sp. MZ1T]
          Length = 300

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
              G +V++ G G G L      LGA  V+ I+ D++     +D ++++   + +  
Sbjct: 164 VTPGCSVLDYGCGSGILGIAAAKLGAGAVLGIDIDEKAVEAARDNAARNHAAVRLQH 220


>gi|198274619|ref|ZP_03207151.1| hypothetical protein BACPLE_00771 [Bacteroides plebeius DSM 17135]
 gi|198272066|gb|EDY96335.1| hypothetical protein BACPLE_00771 [Bacteroides plebeius DSM 17135]
          Length = 238

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHP--NRLEI 99
           +       +++IG G G +  ML        V  ++ D+      ++  ++ P  +R+E+
Sbjct: 33  AQVDGAGRMLDIGTGSGLIALMLAQRNPDAFVTAVDIDEAVVEQARENVARTPWSDRMEV 92

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            + D  K   E          I++N PY + +
Sbjct: 93  ERLDIRKAPEEW---NGCFDAIVSNPPYFVES 121


>gi|167747077|ref|ZP_02419204.1| hypothetical protein ANACAC_01789 [Anaerostipes caccae DSM 14662]
 gi|167654037|gb|EDR98166.1| hypothetical protein ANACAC_01789 [Anaerostipes caccae DSM 14662]
          Length = 321

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 23/45 (51%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
                  ++++G G G L+ + L LGA+K ++ + D +     ++
Sbjct: 171 EIHPETVMLDVGCGSGILSIIALKLGAKKTVMTDIDPRAVKAAEE 215


>gi|192289225|ref|YP_001989830.1| methyltransferase type 12 [Rhodopseudomonas palustris TIE-1]
 gi|192282974|gb|ACE99354.1| Methyltransferase type 12 [Rhodopseudomonas palustris TIE-1]
          Length = 245

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 14/160 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQH 93
            ++        G TV+E+G G G NL Q        K    +   +     I     +  
Sbjct: 56  DRLIAELQPNAGETVLEVGCGTGRNLIQASTRYREAKFYGFDVSTEMLTSAISSIEGAGL 115

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
             R+++   DA     +  F  +     +  + Y++             W    +     
Sbjct: 116 MARVKVAHGDATAFTAQAVFGQAVAFDHV-MISYSLS--------MIPDWTAVIDRAAAN 166

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             K  G+           G  SV      +   +FD++P 
Sbjct: 167 L-KPGGKLHIVDFGD-QRGLPSVARNLLRRWLTLFDVTPR 204


>gi|187736229|ref|YP_001878341.1| Methyltransferase type 11 [Akkermansia muciniphila ATCC BAA-835]
 gi|187426281|gb|ACD05560.1| Methyltransferase type 11 [Akkermansia muciniphila ATCC BAA-835]
          Length = 247

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
              +++++G G G LT  LL   A  V  ++   +     + +      R+
Sbjct: 29 NPDQSILDLGCGTGTLTHALLEKSA-SVTGLDSSPEMIAKARQLYPGMDFRV 79


>gi|118595122|ref|ZP_01552469.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium
           HTCC2181]
 gi|118440900|gb|EAV47527.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium
           HTCC2181]
          Length = 441

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 11/160 (6%)

Query: 17  YKIIPKKYMGQ-NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           ++  P     Q N  ++  +++++           + +   G GN T  + + G+  V+ 
Sbjct: 260 FEFKPT-SFTQINPFINAVLIRRVMNFLNPKPTEVIFDFFCGLGNFTLPIASYGSN-VVG 317

Query: 76  IEKDQQFFPILKDISSQHPNRLEIIQD----DALKVDFEKFFNISSPIRIIANLPYNIGT 131
            E D+          +   N+L+ + +    D  KVD +   ++    + + + P +   
Sbjct: 318 FESDEALVESAN--INAEKNKLQKLAEFKRVDLFKVDDQAITSLGRASKWLIDPPRDGAL 375

Query: 132 RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
            L+ +   ++   P            +        N   Y
Sbjct: 376 NLINSI--SEENKPNLICYVSCNPATLARDAHVLTNEKGY 413


>gi|20094874|ref|NP_614721.1| RNA methylase [Methanopyrus kandleri AV19]
 gi|19888104|gb|AAM02651.1| Predicted RNA methylase [Methanopyrus kandleri AV19]
          Length = 263

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
           V++ GAG G+    +  LG   V  +E D +    L    S + +   ++  D L ++  
Sbjct: 49  VLDAGAGCGSFALTVAALGPYTVYAVEPDPEHSAALSANVSANRD---VLLGDVLPLECS 105

Query: 111 KFFNISSPIRIIANLPYNIGTRL 133
                     ++ + P+ + + +
Sbjct: 106 IEDFRRPVDEVLTDPPWGLRSGI 128


>gi|30248665|ref|NP_840735.1| ribosomal protein L11 methyltransferase [Nitrosomonas europaea ATCC
           19718]
 gi|38605217|sp|Q81ZZ9|PRMA_NITEU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|30180260|emb|CAD84565.1| prmA; putative ribosomal protein L11 methyltransferase
           [Nitrosomonas europaea ATCC 19718]
          Length = 313

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 7/101 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDISSQHPNRLEIIQDD 103
              G +V++ G G G L    L  GA +V  ++ D       L +  +   +   ++   
Sbjct: 162 LQPGDSVLDYGCGSGILAIAALKFGADRVTGMDIDPNAITASLDNARNNFCDPDRLLFTT 221

Query: 104 ALK---VDFEKFFNISSPIRIIANL---PYNIGTRLLFNWI 138
            L     D       +    ++AN+   P  +   +L   +
Sbjct: 222 VLPPLVEDDRASAEWAPVTIVVANILANPLIMLAPVLMKAL 262


>gi|322804332|emb|CBZ01882.1| predicted O-methyltransferase [Clostridium botulinum H04402 065]
          Length = 246

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 13/165 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
             +G  V+++ +G G ++ +L     A  +I IE  ++   + K     +    ++  I+
Sbjct: 43  IKNGAKVVDLCSGTGIISFILAGKTNASNIIGIEIQKEIADMAKRSIKYNNLQEKVRFIE 102

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D LK + +   +I     +  N PY      + N    +         TL    +  + 
Sbjct: 103 GD-LK-NLKLLKDIEKVDVVTVNPPYKTQGTGIININDKNAISRHEICCTLDDVVKAAKV 160

Query: 162 ITAQKN--------SPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +   K               ++V+  +  +  ++  I P V  P 
Sbjct: 161 LLKDKGKLYMIHRPDRIVDIMNVMRKYYIEPKLIRTIHPAVDKPP 205


>gi|322496830|emb|CBZ31900.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 488

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I E      G+ V++ G G G L   L    + KV  I   ++       +    PN
Sbjct: 251 LHMIGEKLRLRPGMEVLDCGCGWGALAAFLSEKYSVKVTGITISEEQREGAARLVKDDPN 310

Query: 96  RLEIIQDDALKVDFEKFFN 114
            + I+  D     F++ F+
Sbjct: 311 -VTILNRDYRDATFDRKFD 328


>gi|320587519|gb|EFW99999.1| S-adenosyl-methionine-sterol-C-methyltransferase [Grosmannia
           clavigera kw1407]
          Length = 411

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + IA   G   G  V+++G G G +   +      K++ +  D       +  + +   +
Sbjct: 170 ESIARDIGIKPGDRVLDLGCGRGRVAAHMAKYSGAKIVGLNIDPNQLAQARSFTKEQGLQ 229

Query: 97  LEIIQDD 103
            E ++ D
Sbjct: 230 NEFVEWD 236


>gi|317401374|gb|EFV82009.1| hypothetical protein HMPREF0005_01017 [Achromobacter xylosoxidans
           C54]
          Length = 393

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT------LGARKVIVIEKDQQFFPILKD 88
           + +++A+     D  TV+E GAG G L + +L       L   + +++E          +
Sbjct: 89  LARQVAQVLRQTDTQTVLEFGAGTGALAEGVLRELDAQGLQETQYLILEISADLRARQAE 148

Query: 89  ISSQHPNRLEIIQDDAL 105
             +    R+  +  DAL
Sbjct: 149 RLAPFGERVRWL--DAL 163


>gi|331674249|ref|ZP_08375009.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli TA280]
 gi|331068343|gb|EGI39738.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli TA280]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNWISAD 141
               L++        D  + +   +P    I+   P  I T L+       
Sbjct: 116 RLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLAEGG 166


>gi|306440519|pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
           Methyltransferase From Escherichia Coli
 gi|306440520|pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
           Methyltransferase From Escherichia Coli
 gi|306440521|pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
           Methyltransferase From Escherichia Coli
 gi|306440522|pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
           Methyltransferase From Escherichia Coli
          Length = 210

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 63  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 117

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +   +P    I+   P  I T L+   
Sbjct: 118 RLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQL 164


>gi|257866972|ref|ZP_05646625.1| ribosomal protein L11 methyltransferase [Enterococcus casseliflavus
           EC30]
 gi|257873306|ref|ZP_05652959.1| ribosomal protein L11 methyltransferase [Enterococcus casseliflavus
           EC10]
 gi|257801028|gb|EEV29958.1| ribosomal protein L11 methyltransferase [Enterococcus casseliflavus
           EC30]
 gi|257807470|gb|EEV36292.1| ribosomal protein L11 methyltransferase [Enterococcus casseliflavus
           EC10]
          Length = 315

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      ++  + +P  + + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASKYLGAKDVFAYDLDEVAVRSAQENMAMNPIAHDVTVQAN 232

Query: 103 DALK 106
           D L+
Sbjct: 233 DLLQ 236


>gi|237750751|ref|ZP_04581231.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879]
 gi|229373841|gb|EEO24232.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879]
          Length = 374

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRL 97
           IA+ S   +   +I+   G G +++ LL   +   +I I++D       ++  ++  +R 
Sbjct: 81  IAKKSLIKNKEVLIDCTLGFGGMSRALLERYSNLHIIGIDRDSYALEYNRESMAKFKDRF 140

Query: 98  EIIQDDA 104
           +    D 
Sbjct: 141 QTRHGDF 147


>gi|220908750|ref|YP_002484061.1| 50S ribosomal protein L11 methyltransferase [Cyanothece sp. PCC
           7425]
 gi|254783299|sp|B8HPZ1|PRMA_CYAP4 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|219865361|gb|ACL45700.1| ribosomal protein L11 methyltransferase [Cyanothece sp. PCC 7425]
          Length = 295

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQHPNRL 97
           ++ G ++ +TV +IG G G L+   L LGA++   ++ D    +     +D++   P ++
Sbjct: 152 QTFGPVEQVTVADIGCGTGILSIAALRLGAKQAFAVDLDPLAVESADRSRDLNEIPPEQM 211

Query: 98  EIIQDDALKVDFE 110
            + Q    +V   
Sbjct: 212 IVQQGSVEQVPHP 224


>gi|146077957|ref|XP_001463394.1| cyclopropane-fatty-acyl-phospholipid synthase [Leishmania infantum
           JPCM5]
 gi|134067479|emb|CAM65755.1| cyclopropane-fatty-acyl-phospholipid syntahse [Leishmania infantum
           JPCM5]
          Length = 488

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I E      G+ V++ G G G L   L    + KV  I   ++       +    PN
Sbjct: 251 LHMIGEKLRLRPGMEVLDCGCGWGALAAFLSEKYSVKVTGITISEEQREGAARLVKDDPN 310

Query: 96  RLEIIQDDALKVDFEKFFN 114
            + I+  D     F++ F+
Sbjct: 311 -VTILNRDYRDATFDRKFD 328


>gi|145504953|ref|XP_001438443.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405615|emb|CAK71046.1| unnamed protein product [Paramecium tetraurelia]
          Length = 219

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 55  GAGPGNLTQMLLTLGARKVIVIEKDQQFF-PILKDISSQHPNRLEIIQDDALKVDFE 110
           G G G LT  LL      V   E D+      L+ +   H    ++I  +     F 
Sbjct: 57  GCGTGMLTAGLLCCNVAHVFAYEFDENVAQDTLQTLQEMHDGAFDLIITNIKHHKFP 113


>gi|115377382|ref|ZP_01464587.1| O-methyl transferase [Stigmatella aurantiaca DW4/3-1]
 gi|310824784|ref|YP_003957142.1| o-methyltransferase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365593|gb|EAU64623.1| O-methyl transferase [Stigmatella aurantiaca DW4/3-1]
 gi|309397856|gb|ADO75315.1| O-methyltransferase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 340

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR---KVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             G  ++E+G G G L   LL   A     V  +   +      ++  +    RL  +  
Sbjct: 172 RPGQKLLEVGGGDGTLAARLLEEHAGLAVDVYNLPSTEGLVTHTREKHA-LGGRLGFVGG 230

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           D L+    + ++  S +R++ + P     R L    +A    P    L +  +    ER+
Sbjct: 231 DFLREPLPRGYDAISFVRVLHDWPAE-TARALMK--AAHAALPPGGRLLICEEFRTPERL 287

Query: 163 TAQ 165
            AQ
Sbjct: 288 AAQ 290


>gi|153826323|ref|ZP_01978990.1| glycosyl transferase, group 1 [Vibrio cholerae MZO-2]
 gi|115279716|gb|ABI85332.1| hypothetical protein [Vibrio cholerae]
 gi|149739892|gb|EDM54079.1| glycosyl transferase, group 1 [Vibrio cholerae MZO-2]
          Length = 635

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
           G  V+EIG G G +++ L   GA  ++ +E   +   I ++ +    N + I+ D     
Sbjct: 84  GKDVLEIGGGCGAISRYLGECGAN-LLTLEGSIRRASIARERTRDLEN-VTIVADSFEGF 141

Query: 108 DFEKFFNISSPIRII--ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165
           + EK F+  + I ++  AN+       + +    A ++      L +  +  +G +  A 
Sbjct: 142 EVEKKFDFVTLIGVLEYANVFSGNENPIKYMLDKAKSFLKPDGKLIIAIENRLGLKYFAG 201

Query: 166 KNSPHYG 172
               H G
Sbjct: 202 AGEDHIG 208


>gi|74313309|ref|YP_311728.1| protein-L-isoaspartate O-methyltransferase [Shigella sonnei Ss046]
 gi|123616335|sp|Q3YYB9|PIMT_SHISS RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|73856786|gb|AAZ89493.1| L-isoaspartate protein carboxylmethyltransferase type II [Shigella
           sonnei Ss046]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQL 162


>gi|49483859|ref|YP_041083.1| O-methyltransferase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282904195|ref|ZP_06312083.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906021|ref|ZP_06313876.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908933|ref|ZP_06316751.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|283958375|ref|ZP_06375826.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295428191|ref|ZP_06820823.1| O-methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590842|ref|ZP_06949480.1| O-methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|49241988|emb|CAG40685.1| putative O-methyltransferase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327197|gb|EFB57492.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331313|gb|EFB60827.1| caffeoyl-CoA O-methyltransferase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595813|gb|EFC00777.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790524|gb|EFC29341.1| O-methyltransferase family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295128549|gb|EFG58183.1| O-methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575728|gb|EFH94444.1| O-methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|315195514|gb|EFU25901.1| putative O-methyltransferase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 212

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           ++D   L  I +     +   ++EIG   G  +    ++     V  IE+++      K 
Sbjct: 34  IVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQ 93

Query: 89  --ISSQHPNRLEIIQDDALK 106
             ++    N++ II+ +AL+
Sbjct: 94  NLVTHHFENQVRIIEGNALE 113


>gi|46127661|ref|XP_388384.1| hypothetical protein FG08208.1 [Gibberella zeae PH-1]
          Length = 2612

 Score = 36.7 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 25/175 (14%)

Query: 32   DLNILKKIAESSG----SLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKD-----Q 80
            ++  + +IA   G        + ++E+GAG G+ T  +L       +V+  + D      
Sbjct: 1497 NVRCISQIATYMGELGRLNPNMKIVEVGAGTGSATLPVLQALQAPNRVLASQYDFTDISP 1556

Query: 81   QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             FFP  +++ + +   ++            K  N           P +    +  N + A
Sbjct: 1557 GFFPAARELLADYEGVVQ-----------YKILNAEKTAEENGFEPNSYDVLIASNVLHA 1605

Query: 141  DTWPPFWESLTLLFQKEVGERITAQK--NSPHYG-RLSVLTGWRTKATMMFDISP 192
                           +  G+ I  +   N PHYG     L GW         +SP
Sbjct: 1606 TPCIDAVLENVKTMLRPGGKLILMEPTENLPHYGLVFGSLAGWWAGVDEGRTLSP 1660


>gi|330841073|ref|XP_003292529.1| hypothetical protein DICPUDRAFT_157251 [Dictyostelium purpureum]
 gi|325077225|gb|EGC30952.1| hypothetical protein DICPUDRAFT_157251 [Dictyostelium purpureum]
          Length = 465

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I++S        V+++G G G L+      GA++V  +  D        ++  +      
Sbjct: 118 ISKSKDFFKDKVVLDVGCGTGILSCFCAKAGAKRVYAV--DASDMAYNAELVVERNG--- 172

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
               D +KV   K  +I+ P  +   +   IG+ L+F 
Sbjct: 173 --LGDIVKVMKGKLEHIAFPEYVDIIVSEWIGSFLIFE 208


>gi|315937044|gb|ADU56053.1| hypothetical protein CA37-30 [uncultured organism CA37]
          Length = 271

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
            ++ +I        G   +++G G G  ++     G   V+ +E D +     +
Sbjct: 34 QALIDRIIA---LSPGRRFVDVGCGTGISSRPFQAAGC-TVLGVEPDARMAEFAR 84


>gi|296283188|ref|ZP_06861186.1| hypothetical protein CbatJ_06186 [Citromicrobium bathyomarinum
           JL354]
          Length = 200

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             DG  V++IG G G L   L          +E D +               L ++Q DA
Sbjct: 18  IPDGSRVLDIGCGEGTLLAALAEHKGIDARGLEIDPERVATCVSRG------LSVVQGDA 71


>gi|291393746|ref|XP_002713409.1| PREDICTED: HemK methyltransferase family member 1-like [Oryctolagus
           cuniculus]
          Length = 350

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLE 98
           ++G+  G  ++E+G G G +   +L  L   +VI +++++    +  + +   Q  +R+ 
Sbjct: 165 AAGAQGGPLILEVGCGSGAIALSLLSQLLESRVIAVDREEAAICLTHENAQRLQLQDRIW 224

Query: 99  IIQDDA-LKVDFEKFFNISSPIRIIANLPY 127
           I+  D  L+  +           +++N PY
Sbjct: 225 IVPLDVTLEGSWTHLLPWGPVDLVVSNPPY 254


>gi|256616930|ref|ZP_05473776.1| modification methylase HemK [Enterococcus faecalis ATCC 4200]
 gi|307276805|ref|ZP_07557916.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX2134]
 gi|256596457|gb|EEU15633.1| modification methylase HemK [Enterococcus faecalis ATCC 4200]
 gi|306506442|gb|EFM75601.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX2134]
          Length = 277

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAVSLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|218701234|ref|YP_002408863.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli IAI39]
 gi|226702495|sp|B7NT87|PIMT_ECO7I RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|218371220|emb|CAR19051.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli IAI39]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQL 162


>gi|149174486|ref|ZP_01853112.1| protein-L-isoaspartate O-methyltransferase [Planctomyces maris DSM
           8797]
 gi|148846596|gb|EDL60933.1| protein-L-isoaspartate O-methyltransferase [Planctomyces maris DSM
           8797]
          Length = 407

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 7/132 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK----DQQFFPILKD 88
             ++  + E+        V+EIG G G     +L+   + V  IE      ++    LK 
Sbjct: 92  PYVVAYMTETIDPQPDDKVLEIGTGSG-FQAAVLSALVKDVYTIEIVEGLGKKAAVRLKK 150

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           +   + N    I D  L    E  F+          +P  +  +L    +        ++
Sbjct: 151 L--DYDNVHTRIGDGYLGWPEEAPFDKIIVTCSPEKVPQPLIDQLKEGGMLLIPLGERYQ 208

Query: 149 SLTLLFQKEVGE 160
            +  LFQKE GE
Sbjct: 209 QVFHLFQKEKGE 220


>gi|68271863|gb|AAY89239.1| protein isoaspartate methyltransferase [Escherichia coli]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKNLDLHNVSTRHGDGWQGWQARAPFDXIIVTAAPPEIPTALMTQL 162


>gi|29377041|ref|NP_816195.1| hemK protein [Enterococcus faecalis V583]
 gi|227554051|ref|ZP_03984098.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis HH22]
 gi|257419964|ref|ZP_05596958.1| modification methylase hemK [Enterococcus faecalis T11]
 gi|29344507|gb|AAO82265.1| hemK protein [Enterococcus faecalis V583]
 gi|227176799|gb|EEI57771.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis HH22]
 gi|257161792|gb|EEU91752.1| modification methylase hemK [Enterococcus faecalis T11]
 gi|315574711|gb|EFU86902.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0309B]
 gi|315580977|gb|EFU93168.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0309A]
          Length = 277

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAVSLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|120555951|ref|YP_960302.1| methyltransferase type 11 [Marinobacter aquaeolei VT8]
 gi|120325800|gb|ABM20115.1| transcriptional regulator, ArsR family [Marinobacter aquaeolei VT8]
          Length = 333

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQH 93
             + I + +     ++V+EIG G G    +L  L  + V+ ++  +            +H
Sbjct: 156 TAELIRKRAARQSWLSVLEIGPGEGGFLPVLSELF-QHVVGLDNSKDMLAKATRTCIEEH 214

Query: 94  PNRLEIIQD 102
            N +++I+ 
Sbjct: 215 LNNVDLIEG 223


>gi|15803260|ref|NP_289292.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 EDL933]
 gi|15832851|ref|NP_311624.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|16130650|ref|NP_417223.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli str. K-12 substr. MG1655]
 gi|30064100|ref|NP_838271.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|82545184|ref|YP_409131.1| protein-L-isoaspartate O-methyltransferase [Shigella boydii Sb227]
 gi|82778110|ref|YP_404459.1| protein-L-isoaspartate O-methyltransferase [Shigella dysenteriae
           Sd197]
 gi|89109530|ref|AP_003310.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli str. K-12 substr. W3110]
 gi|110806626|ref|YP_690146.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri 5
           str. 8401]
 gi|157158360|ref|YP_001464066.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           E24377A]
 gi|157162191|ref|YP_001459509.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli HS]
 gi|168749930|ref|ZP_02774952.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755490|ref|ZP_02780497.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762855|ref|ZP_02787862.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168768837|ref|ZP_02793844.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774722|ref|ZP_02799729.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778728|ref|ZP_02803735.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787999|ref|ZP_02813006.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC869]
 gi|168800176|ref|ZP_02825183.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC508]
 gi|170019011|ref|YP_001723965.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli ATCC
           8739]
 gi|170082318|ref|YP_001731638.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170682160|ref|YP_001744892.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           SMS-3-5]
 gi|187733185|ref|YP_001881514.1| protein-L-isoaspartate O-methyltransferase [Shigella boydii CDC
           3083-94]
 gi|188494693|ref|ZP_03001963.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli 53638]
 gi|191166797|ref|ZP_03028623.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli B7A]
 gi|193064988|ref|ZP_03046063.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli E22]
 gi|193069669|ref|ZP_03050621.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           E110019]
 gi|194427860|ref|ZP_03060406.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli B171]
 gi|194439012|ref|ZP_03071096.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli 101-1]
 gi|195939456|ref|ZP_03084838.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806617|ref|ZP_03248954.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812967|ref|ZP_03254296.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819663|ref|ZP_03259983.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399278|ref|YP_002272206.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920186|ref|YP_002294270.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli SE11]
 gi|215488063|ref|YP_002330494.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326837|ref|ZP_03442920.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555290|ref|YP_002388203.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli IAI1]
 gi|218696341|ref|YP_002404008.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli 55989]
 gi|218706237|ref|YP_002413756.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           UMN026]
 gi|238901880|ref|YP_002927676.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli BW2952]
 gi|253772401|ref|YP_003035232.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037785|ref|ZP_04871843.1| L-isoaspartate O-methyltransferase [Escherichia sp. 1_1_43]
 gi|254162674|ref|YP_003045782.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli B str.
           REL606]
 gi|254794683|ref|YP_003079520.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019472|ref|ZP_05433337.1| protein-L-isoaspartate O-methyltransferase [Shigella sp. D9]
 gi|256024749|ref|ZP_05438614.1| protein-L-isoaspartate O-methyltransferase [Escherichia sp.
           4_1_40B]
 gi|260845390|ref|YP_003223168.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O103:H2 str. 12009]
 gi|260856854|ref|YP_003230745.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O26:H11 str. 11368]
 gi|260869422|ref|YP_003235824.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O111:H- str. 11128]
 gi|261226038|ref|ZP_05940319.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256706|ref|ZP_05949239.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291284070|ref|YP_003500888.1| Protein-L-isoaspartate O-methyltransferase [Escherichia coli O55:H7
           str. CB9615]
 gi|293406235|ref|ZP_06650161.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           FVEC1412]
 gi|293412098|ref|ZP_06654821.1| hypothetical protein ECEG_02100 [Escherichia coli B354]
 gi|293415989|ref|ZP_06658629.1| L-isoaspartate O-methyltransferase [Escherichia coli B185]
 gi|293449064|ref|ZP_06663485.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli B088]
 gi|297518367|ref|ZP_06936753.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli OP50]
 gi|298381972|ref|ZP_06991569.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Escherichia coli FVEC1302]
 gi|300815847|ref|ZP_07096071.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           107-1]
 gi|300820524|ref|ZP_07100675.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           119-7]
 gi|300899984|ref|ZP_07118187.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           198-1]
 gi|300906751|ref|ZP_07124433.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           84-1]
 gi|300919220|ref|ZP_07135743.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           115-1]
 gi|300922266|ref|ZP_07138392.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           182-1]
 gi|300930602|ref|ZP_07145994.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           187-1]
 gi|300946978|ref|ZP_07161204.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           116-1]
 gi|300954986|ref|ZP_07167397.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           175-1]
 gi|301027159|ref|ZP_07190528.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           69-1]
 gi|301027334|ref|ZP_07190675.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           196-1]
 gi|301306158|ref|ZP_07212234.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           124-1]
 gi|301326216|ref|ZP_07219599.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           78-1]
 gi|306812375|ref|ZP_07446573.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli NC101]
 gi|307139431|ref|ZP_07498787.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli H736]
 gi|307312829|ref|ZP_07592459.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli W]
 gi|309786167|ref|ZP_07680795.1| protein-L-isoaspartate O-methyltransferase [Shigella dysenteriae
           1617]
 gi|309795211|ref|ZP_07689630.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           145-7]
 gi|312964990|ref|ZP_07779230.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           2362-75]
 gi|312973046|ref|ZP_07787219.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           1827-70]
 gi|331643429|ref|ZP_08344560.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli H736]
 gi|331648466|ref|ZP_08349554.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli M605]
 gi|331664299|ref|ZP_08365205.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli TA143]
 gi|331669482|ref|ZP_08370328.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli TA271]
 gi|331678723|ref|ZP_08379397.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli H591]
 gi|332280594|ref|ZP_08393007.1| L-isoaspartate protein carboxylmethyltransferase type II [Shigella
           sp. D9]
 gi|67470899|sp|P0A7A5|PIMT_ECOLI RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|67470900|sp|P0A7A6|PIMT_ECO57 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|123146787|sp|Q0T1H4|PIMT_SHIF8 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|123558859|sp|Q31XA5|PIMT_SHIBS RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|123561779|sp|Q32CI7|PIMT_SHIDS RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|166987988|sp|A7ZQI7|PIMT_ECO24 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|166987989|sp|A8A3M2|PIMT_ECOHS RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|189036859|sp|B1IUT6|PIMT_ECOLC RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|209573180|sp|B1XCR9|PIMT_ECODH RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|209573181|sp|B1LQ63|PIMT_ECOSM RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|209573236|sp|B2TZI8|PIMT_SHIB3 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|226702496|sp|B7LXF5|PIMT_ECO8A RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|226702497|sp|B7N6X3|PIMT_ECOLU RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|238057823|sp|B5Z3A5|PIMT_ECO5E RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|238057824|sp|B6I6D3|PIMT_ECOSE RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|254782271|sp|B7UHG2|PIMT_ECO27 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|254782272|sp|B7LEG1|PIMT_ECO55 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|259530945|sp|C4ZZP7|PIMT_ECOBW RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|12517197|gb|AAG57850.1|AE005502_4 L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O157:H7 str. EDL933]
 gi|147115|gb|AAA24302.1| L-isoaspartyl protein carboxyl methyltransferase [Escherichia coli]
 gi|882636|gb|AAA69253.1| L-isoaspartyl protein carboxyl methyltransferase type II
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1789100|gb|AAC75785.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13363068|dbj|BAB37020.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O157:H7 str. Sakai]
 gi|30042356|gb|AAP18081.1| L-isoaspartate protein carboxylmethyltransferase type II [Shigella
           flexneri 2a str. 2457T]
 gi|81242258|gb|ABB62968.1| L-isoaspartate protein carboxylmethyltransferase type II [Shigella
           dysenteriae Sd197]
 gi|81246595|gb|ABB67303.1| L-isoaspartate protein carboxylmethyltransferase type II [Shigella
           boydii Sb227]
 gi|85675564|dbj|BAE76820.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli str. K12 substr. W3110]
 gi|110616174|gb|ABF04841.1| L-isoaspartate protein carboxylmethyltransferase type II [Shigella
           flexneri 5 str. 8401]
 gi|157067871|gb|ABV07126.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli HS]
 gi|157080390|gb|ABV20098.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           E24377A]
 gi|169753939|gb|ACA76638.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli ATCC
           8739]
 gi|169890153|gb|ACB03860.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170519878|gb|ACB18056.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           SMS-3-5]
 gi|187430177|gb|ACD09451.1| protein-L-isoaspartate O-methyltransferase [Shigella boydii CDC
           3083-94]
 gi|187769654|gb|EDU33498.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188015802|gb|EDU53924.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4113]
 gi|188489892|gb|EDU64995.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli 53638]
 gi|189003215|gb|EDU72201.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357286|gb|EDU75705.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362008|gb|EDU80427.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366891|gb|EDU85307.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372207|gb|EDU90623.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC869]
 gi|189377519|gb|EDU95935.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC508]
 gi|190903168|gb|EDV62891.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli B7A]
 gi|192927285|gb|EDV81904.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli E22]
 gi|192957032|gb|EDV87483.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           E110019]
 gi|194414093|gb|EDX30369.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli B171]
 gi|194422133|gb|EDX38136.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli 101-1]
 gi|208726418|gb|EDZ76019.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734244|gb|EDZ82931.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739786|gb|EDZ87468.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160678|gb|ACI38111.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209761748|gb|ACI79186.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli]
 gi|209761750|gb|ACI79187.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli]
 gi|209761752|gb|ACI79188.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli]
 gi|209761754|gb|ACI79189.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli]
 gi|209761756|gb|ACI79190.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli]
 gi|209913445|dbj|BAG78519.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli SE11]
 gi|215266135|emb|CAS10561.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O127:H6 str. E2348/69]
 gi|217319204|gb|EEC27629.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. TW14588]
 gi|218353073|emb|CAU98898.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli 55989]
 gi|218362058|emb|CAQ99667.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli IAI1]
 gi|218433334|emb|CAR14234.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli UMN026]
 gi|222034440|emb|CAP77182.1| Protein-L-isoaspartate O-methyltransferase [Escherichia coli LF82]
 gi|226839409|gb|EEH71430.1| L-isoaspartate O-methyltransferase [Escherichia sp. 1_1_43]
 gi|238861671|gb|ACR63669.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli BW2952]
 gi|242378298|emb|CAQ33075.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli BL21(DE3)]
 gi|253323445|gb|ACT28047.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974575|gb|ACT40246.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253978742|gb|ACT44412.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|254594083|gb|ACT73444.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O157:H7 str. TW14359]
 gi|257755503|dbj|BAI27005.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O26:H11 str. 11368]
 gi|257760537|dbj|BAI32034.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O103:H2 str. 12009]
 gi|257765778|dbj|BAI37273.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli O111:H- str. 11128]
 gi|260448206|gb|ACX38628.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli DH1]
 gi|281179749|dbj|BAI56079.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli SE15]
 gi|281602114|gb|ADA75098.1| Protein-L-isoaspartate O-methyltransferase [Shigella flexneri
           2002017]
 gi|284922679|emb|CBG35767.1| Protein-L-isoaspartate O-methyltransferase [Escherichia coli 042]
 gi|290763943|gb|ADD57904.1| Protein-L-isoaspartate O-methyltransferase [Escherichia coli O55:H7
           str. CB9615]
 gi|291322154|gb|EFE61583.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli B088]
 gi|291426241|gb|EFE99273.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           FVEC1412]
 gi|291432178|gb|EFF05160.1| L-isoaspartate O-methyltransferase [Escherichia coli B185]
 gi|291468869|gb|EFF11360.1| hypothetical protein ECEG_02100 [Escherichia coli B354]
 gi|298277112|gb|EFI18628.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Escherichia coli FVEC1302]
 gi|299879327|gb|EFI87538.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           196-1]
 gi|300318078|gb|EFJ67862.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           175-1]
 gi|300356493|gb|EFJ72363.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           198-1]
 gi|300395191|gb|EFJ78729.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           69-1]
 gi|300401445|gb|EFJ84983.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           84-1]
 gi|300413665|gb|EFJ96975.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           115-1]
 gi|300421396|gb|EFK04707.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           182-1]
 gi|300453365|gb|EFK16985.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           116-1]
 gi|300461544|gb|EFK25037.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           187-1]
 gi|300526788|gb|EFK47857.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           119-7]
 gi|300531776|gb|EFK52838.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           107-1]
 gi|300838590|gb|EFK66350.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           124-1]
 gi|300847061|gb|EFK74821.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           78-1]
 gi|305854413|gb|EFM54851.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli NC101]
 gi|306907264|gb|EFN37770.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli W]
 gi|308121182|gb|EFO58444.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           145-7]
 gi|308925912|gb|EFP71391.1| protein-L-isoaspartate O-methyltransferase [Shigella dysenteriae
           1617]
 gi|309703102|emb|CBJ02434.1| Protein-L-isoaspartate O-methyltransferase [Escherichia coli ETEC
           H10407]
 gi|310332988|gb|EFQ00202.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           1827-70]
 gi|312290546|gb|EFR18426.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           2362-75]
 gi|312947275|gb|ADR28102.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313647810|gb|EFS12256.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|315062024|gb|ADT76351.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli W]
 gi|315137350|dbj|BAJ44509.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli DH1]
 gi|315254528|gb|EFU34496.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           85-1]
 gi|315615132|gb|EFU95769.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli 3431]
 gi|320173407|gb|EFW48606.1| Protein-L-isoaspartate O-methyltransferase [Shigella dysenteriae
           CDC 74-1112]
 gi|320180823|gb|EFW55746.1| Protein-L-isoaspartate O-methyltransferase [Shigella boydii ATCC
           9905]
 gi|320186527|gb|EFW61255.1| Protein-L-isoaspartate O-methyltransferase [Shigella flexneri CDC
           796-83]
 gi|320189072|gb|EFW63731.1| Protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320194882|gb|EFW69511.1| Protein-L-isoaspartate O-methyltransferase [Escherichia coli
           WV_060327]
 gi|320202394|gb|EFW76964.1| Protein-L-isoaspartate O-methyltransferase [Escherichia coli
           EC4100B]
 gi|320640387|gb|EFX09926.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. G5101]
 gi|320645933|gb|EFX14914.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H- str. 493-89]
 gi|320651233|gb|EFX19668.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H- str. H 2687]
 gi|320656783|gb|EFX24671.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662326|gb|EFX29723.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667378|gb|EFX34336.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154966|gb|EFZ41158.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           EPECa14]
 gi|323159948|gb|EFZ45918.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           E128010]
 gi|323167240|gb|EFZ52957.1| protein-L-isoaspartate O-methyltransferase [Shigella sonnei 53G]
 gi|323172963|gb|EFZ58594.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli LT-68]
 gi|323183275|gb|EFZ68672.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli 1357]
 gi|323188840|gb|EFZ74125.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           RN587/1]
 gi|323377393|gb|ADX49661.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli KO11]
 gi|323935700|gb|EGB32014.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli E1520]
 gi|323941426|gb|EGB37609.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli E482]
 gi|323946371|gb|EGB42399.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli H120]
 gi|323960597|gb|EGB56223.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli H489]
 gi|323966895|gb|EGB62324.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli M863]
 gi|323971528|gb|EGB66761.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli TA007]
 gi|323978649|gb|EGB73731.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           TW10509]
 gi|324017014|gb|EGB86233.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           117-3]
 gi|324119997|gb|EGC13875.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli E1167]
 gi|326339189|gb|EGD63004.1| Protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. 1044]
 gi|326342928|gb|EGD66696.1| Protein-L-isoaspartate O-methyltransferase [Escherichia coli
           O157:H7 str. 1125]
 gi|327251471|gb|EGE63157.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           STEC_7v]
 gi|330908779|gb|EGH37293.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli AA86]
 gi|331036900|gb|EGI09124.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli H736]
 gi|331042213|gb|EGI14355.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli M605]
 gi|331058230|gb|EGI30211.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli TA143]
 gi|331063150|gb|EGI35063.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli TA271]
 gi|331073553|gb|EGI44874.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli H591]
 gi|332087479|gb|EGI92607.1| protein-L-isoaspartate O-methyltransferase [Shigella boydii
           5216-82]
 gi|332091933|gb|EGI97011.1| protein-L-isoaspartate O-methyltransferase [Shigella boydii
           3594-74]
 gi|332102946|gb|EGJ06292.1| L-isoaspartate protein carboxylmethyltransferase type II [Shigella
           sp. D9]
 gi|332344626|gb|AEE57960.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           UMNK88]
 gi|332753601|gb|EGJ83980.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri
           K-671]
 gi|332755644|gb|EGJ86007.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri
           2747-71]
 gi|332765697|gb|EGJ95910.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri
           2930-71]
 gi|332999497|gb|EGK19082.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri VA-6]
 gi|333000170|gb|EGK19753.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri
           K-218]
 gi|333001096|gb|EGK20666.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri
           K-272]
 gi|333015399|gb|EGK34738.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri
           K-227]
 gi|333015761|gb|EGK35099.1| protein-L-isoaspartate O-methyltransferase [Shigella flexneri
           K-304]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQL 162


>gi|320529957|ref|ZP_08031033.1| ribosomal protein L11 methyltransferase [Selenomonas artemidis
           F0399]
 gi|320137754|gb|EFW29660.1| ribosomal protein L11 methyltransferase [Selenomonas artemidis
           F0399]
          Length = 317

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            + G  V ++G G G L      LGA +V+ ++ D     + +    Q+  R  ++   A
Sbjct: 171 VVPGTRVYDVGCGSGILAIAAAKLGAGEVLAMDCDPVAVRVAEQNIVQNDVRGHVV---A 227

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           ++ D         P  +I     NI   ++   +  
Sbjct: 228 MESDLLAICRGMEPAGLIMA---NIIADVVIRLLDG 260


>gi|320353448|ref|YP_004194787.1| protein-L-isoaspartate O-methyltransferase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121950|gb|ADW17496.1| protein-L-isoaspartate O-methyltransferase [Desulfobulbus
           propionicus DSM 2032]
          Length = 248

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + +         ++E+GAG G     +L+    +V  IE   +     ++  ++
Sbjct: 99  PYIVALMTDLLAVSKEGKILEVGAGSGY-QAAVLSRLVNEVHSIEIIPELAKECRERLAR 157

Query: 93  H-PNRLEIIQDD 103
                + I Q D
Sbjct: 158 LGYANVTIHQGD 169


>gi|311070219|ref|YP_003975142.1| glutamine methylase [Bacillus atrophaeus 1942]
 gi|310870736|gb|ADP34211.1| glutamine methylase [Bacillus atrophaeus 1942]
          Length = 288

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 50  TVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            VI++G G G +   L L      V  I+  ++   I  + + +   +++  + D L+  
Sbjct: 118 RVIDVGTGSGAIAVTLALENKHFSVSAIDISKEALQIAAENAERLGAKVDFFEGDLLE-- 175

Query: 109 FEKFFNISSPIRIIANLPY 127
                       I++N PY
Sbjct: 176 -PFIKEGKKADIIVSNPPY 193


>gi|310287655|ref|YP_003938913.1| methyltransferase [Bifidobacterium bifidum S17]
 gi|309251591|gb|ADO53339.1| putative methyltransferase [Bifidobacterium bifidum S17]
          Length = 288

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           L+G  V+E   G G  TQ++L    +    +++D Q   I+  +++++ 
Sbjct: 65  LEGKDVVEFAPGLGRTTQLILERKPKSYRGVDRDPQVVDIITKLTAENA 113


>gi|307104307|gb|EFN52561.1| hypothetical protein CHLNCDRAFT_138547 [Chlorella variabilis]
          Length = 214

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 33  LNILKKI----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            +I  ++    A S    +G TVI++G G   L+     LGA  V+ ++ D     + + 
Sbjct: 30  PHIAARMLYTVANSYDEFEGQTVIDLGCGTAMLSIGAAMLGALHVVGVDVDGDALRVAQQ 89

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFF 113
            + ++   L I   D ++ D  +  
Sbjct: 90  NAEEYEEPLPI---DFVRCDVGQVA 111


>gi|300176030|emb|CBK23341.2| unnamed protein product [Blastocystis hominis]
          Length = 359

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 12/146 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE---KDQQFFPILKDISSQH 93
             I  +        V+E+GAG G +       GA+ V  IE     +Q   I+K+  +  
Sbjct: 69  NAIMNNKHLFKDKIVLEVGAGTGIMCMFAAKAGAKHVYGIEYSAISRQAKEIVKE--NGL 126

Query: 94  PNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLF---NWISAD--TWPPF 146
            N + II+     +++  EK   I S          ++   ++F    W+      +P  
Sbjct: 127 QNIITIIEGKVEEVELPVEKVDIIISEWMGYFLFYESMLETVIFARDKWLKEGGLIFPDH 186

Query: 147 WESLTLLFQKEVGERITAQKNSPHYG 172
            + + L  + E             YG
Sbjct: 187 AKLMLLGIEDESYHHEMIDFWDDVYG 212


>gi|316936000|ref|YP_004110982.1| type 11 methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315603714|gb|ADU46249.1| Methyltransferase type 11 [Rhodopseudomonas palustris DX-1]
          Length = 206

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 40  AESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRL 97
           A+++G       V+EIG G G+    L    A  +           +L+   +   P  L
Sbjct: 33  ADAAGRLRPTDRVLEIGCGTGSAAIRLAPHAAEWIAT----DFSAEMLRIARAKPAPANL 88

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLP 126
             +Q DA        F+     +++  +P
Sbjct: 89  RFVQADAATAFDGGPFDAICAFQVLHLVP 117


>gi|260775505|ref|ZP_05884402.1| protein-L-isoaspartate O-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608686|gb|EEX34851.1| protein-L-isoaspartate O-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 208

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+E+G G G  T +L  L    V  IE+       L+  + +
Sbjct: 61  PYIVAKMTEMLELRSTSKVLEVGTGSGYQTAVLAQL-VDHVYSIER----IKSLQWEAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
              +L+I        D  + + +  P   I           + 
Sbjct: 116 RLKQLDIYNVSTKHGDGWQGWAVKGPFDAIIVTAAAASVPPVL 158


>gi|260592501|ref|ZP_05857959.1| ribosomal protein L11 methyltransferase [Prevotella veroralis
           F0319]
 gi|260535547|gb|EEX18164.1| ribosomal protein L11 methyltransferase [Prevotella veroralis
           F0319]
          Length = 288

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)

Query: 35  ILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + I       +L G  V++ G G G L  +    G ++V   + D+         ++Q
Sbjct: 137 TTQMIVSLLLNQNLTGKRVLDCGCGTGILGIVAAKYGVKEVFAYDIDEWSVN-----NAQ 191

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII-ANLPYNI 129
           H   L  ++ D L+ D     +IS     + AN+  NI
Sbjct: 192 HNAELNEVELDVLEGDKRVLSHISGVFDFVLANINRNI 229


>gi|237654707|ref|YP_002891021.1| methionine biosynthesis protein MetW [Thauera sp. MZ1T]
 gi|237625954|gb|ACR02644.1| methionine biosynthesis protein MetW [Thauera sp. MZ1T]
          Length = 196

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              G  V+++G G G L + L+ +   +   +E D         + +   N + +IQ D
Sbjct: 15  IEPGEKVLDLGCGDGELLRHLMDVRQVQGYGVENDPD------KLLASVNNGVNVIQMD 67


>gi|291190262|ref|NP_001167350.1| phosphoethanolamine N-methyltransferase 3 [Salmo salar]
 gi|223649374|gb|ACN11445.1| phosphoethanolamine N-methyltransferase 3 [Salmo salar]
          Length = 495

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I     SL G  V+E+GAG G  T  LLTL A  V  ++  + F    +  +S + N   
Sbjct: 42  ILSLLPSLSGQRVLELGAGIGRYTSHLLTL-ASHVTAVDFMESFVEKNRQDNSHYSNA-S 99

Query: 99  IIQDDALKVDFEK 111
            +Q D  K+DF K
Sbjct: 100 FLQADVTKLDFPK 112


>gi|224373757|ref|YP_002608129.1| protein-L-isoaspartate O-methyltransferase [Nautilia profundicola
           AmH]
 gi|223588692|gb|ACM92428.1| protein-L-isoaspartate O-methyltransferase [Nautilia profundicola
           AmH]
          Length = 202

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
               + K+       D  +V+EIG G G     +L+   R+V  I++  +   + K+   
Sbjct: 56  SPLTIAKMTSYLELDDVDSVLEIGCGSGY-QAAILSKIVRRVFTIDRICRLVEVAKERFK 114

Query: 92  Q 92
           +
Sbjct: 115 K 115


>gi|212710257|ref|ZP_03318385.1| hypothetical protein PROVALCAL_01316 [Providencia alcalifaciens
          DSM 30120]
 gi|212687064|gb|EEB46592.1| hypothetical protein PROVALCAL_01316 [Providencia alcalifaciens
          DSM 30120]
          Length = 185

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNR 96
          I  +    + I + EIGAG G +T+ +      K  + + E ++ F  IL  I      R
Sbjct: 40 IVSNIDWRNCIKIAEIGAGNGVMTRYIANEIPEKSSLELYEINRDFIAILNQIE---DPR 96

Query: 97 LEI 99
          + +
Sbjct: 97 VTV 99


>gi|170754291|ref|YP_001782171.1| O-methyltransferase family protein [Clostridium botulinum B1 str.
           Okra]
 gi|169119503|gb|ACA43339.1| O-methyltransferase family protein [Clostridium botulinum B1 str.
           Okra]
          Length = 218

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 8/137 (5%)

Query: 43  SGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
                   ++E+G   G  ++   L + G   +  IE+D +   I KD   ++   ++++
Sbjct: 51  ISVKKPKKILELGTAIGYSSIFMSLSSKGECNITTIERDDKMIEIAKDNIEKYSFKDKIK 110

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP----FWESLTLLF 154
           IIQ D L++                   YN         ++ D         +  +    
Sbjct: 111 IIQGDCLEILKNLEDKYDMIFMDAGKGHYNEFLPYCLKLLNKDGIIIADNVLFRGMVAND 170

Query: 155 QKEVGERITAQKNSPHY 171
           +  +  +IT  K    Y
Sbjct: 171 ELVIRRKITIVKRMRKY 187


>gi|159030022|emb|CAO90403.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 412

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           +I ++       TVIE+ AG G +   L   G +  +++E +Q     L+    Q     
Sbjct: 59  RILQTVEPT-NYTVIELFAGCGGMALGLENAGLKTQLLVEINQDCVNTLRLNRPQW---- 113

Query: 98  EIIQDDALKVDFEKFFN 114
            +I  D  K+ F  F +
Sbjct: 114 NVINQDIKKIKFSDFRD 130


>gi|157414961|ref|YP_001482217.1| hypothetical protein C8J_0641 [Campylobacter jejuni subsp. jejuni
          81116]
 gi|157385925|gb|ABV52240.1| hypothetical protein C8J_0641 [Campylobacter jejuni subsp. jejuni
          81116]
 gi|307747601|gb|ADN90871.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
          jejuni M1]
          Length = 257

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLT 67
           +  HY   P             +L+K+             + ++E+GAG G LT+ML  
Sbjct: 8  EVAKHYHNRPAYS--------PFLLEKLVACINDKNKNLKDLNIVEVGAGTGKLTKMLGE 59

Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPN 95
          +   ++  +E +       +  +    N
Sbjct: 60 MFGCQISAVEPNDNMREEGQKFTQNLSN 87


>gi|148554937|ref|YP_001262519.1| indolepyruvate ferredoxin oxidoreductase [Sphingomonas wittichii
           RW1]
 gi|148500127|gb|ABQ68381.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sphingomonas
           wittichii RW1]
          Length = 1144

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 32  DLNILKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++NI  KI   S+ ++ G   +E     G + +  L  GARKV+++ +D           
Sbjct: 511 NVNITYKILCNSAVAMTGGQPVEGSPDAGIIARQTLAEGARKVVLVSEDPD-------RF 563

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              P  +E+   DAL     +   I     ++
Sbjct: 564 PDMPAGIEVHHRDALMRIQRELREIEGVTVLV 595


>gi|189424152|ref|YP_001951329.1| protein-L-isoaspartate O-methyltransferase [Geobacter lovleyi SZ]
 gi|209573184|sp|B3E6I4|PIMT_GEOLS RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|189420411|gb|ACD94809.1| protein-L-isoaspartate O-methyltransferase [Geobacter lovleyi SZ]
          Length = 217

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + +         V+EIG G G  T +L +L  R+V  IE+       L   + +
Sbjct: 64  PYIVALMTDLLELTGNDHVLEIGTGSGYQTAILASL-VRRVWTIER----IRPLAMQARK 118

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             + L ++  +    D    +    P   I
Sbjct: 119 VLDTLHLLNVNIKVGDGTLGWPEEGPFDAI 148


>gi|170732235|ref|YP_001764182.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia cenocepacia MC0-3]
 gi|169815477|gb|ACA90060.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia cenocepacia MC0-3]
          Length = 218

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISS 91
             +  ++ +         V+ IGAG G L   L    A+ V  +E D       +D + +
Sbjct: 64  PRVEARVLQELTVKKHENVLVIGAGSGYL-AALFAHRAQHVTAVEIDPTIAKFAEDNLRN 122

Query: 92  QHPNRLEIIQDD 103
                 E++  D
Sbjct: 123 DGVTNAEVVLGD 134


>gi|114568822|ref|YP_755502.1| cyclopropane-fatty-acyl-phospholipid synthase [Maricaulis maris
           MCS10]
 gi|114339284|gb|ABI64564.1| Cyclopropane-fatty-acyl-phospholipid synthase [Maricaulis maris
           MCS10]
          Length = 413

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGN 60
           ++I E  G   G  V+EIG G G 
Sbjct: 182 RRICERLGLKPGDRVLEIGCGWGG 205


>gi|52144061|ref|YP_082768.1| methyltransferase [Bacillus cereus E33L]
 gi|51977530|gb|AAU19080.1| probable methyltransferase [Bacillus cereus E33L]
          Length = 251

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 26/169 (15%)

Query: 1   MTMNNKSHSLKTILSHYKII-PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG 59
           M           I + Y+   P KY           ++ +  ++   +   V +IG+G G
Sbjct: 1   MKTTENFTDKADIYAKYRPSYPNKY-----------IEYLLSANELNENQIVADIGSGTG 49

Query: 60  NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA----LKVDFEKFFNI 115
             ++ LL  G   VI +E +     + +   +Q+P R + I+  A    LK +      +
Sbjct: 50  IFSRQLLESG-LHVIGVEPNDDMRKMAEQSLNQYP-RFQSIKATAEHTTLKENSVDLVTV 107

Query: 116 SSPIRIIANLPYNIGTRLLFN--------WISADTWPPFWESLTLLFQK 156
           +          + I  + +          W S D   P  +    + QK
Sbjct: 108 AQAFHWFDKEAFKIECQRILKQKANVALVWNSRDVTSPLIKENAEICQK 156


>gi|107021991|ref|YP_620318.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia cenocepacia AU 1054]
 gi|116688935|ref|YP_834558.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia cenocepacia HI2424]
 gi|105892180|gb|ABF75345.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia cenocepacia AU 1054]
 gi|116647024|gb|ABK07665.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia cenocepacia HI2424]
          Length = 218

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISS 91
             +  ++ +         V+ IGAG G L   L    A+ V  +E D       +D + +
Sbjct: 64  PRVEARVLQELTVKKHENVLVIGAGSGYL-AALFAHRAQHVTAVEIDPTIAKFAEDNLRN 122

Query: 92  QHPNRLEIIQDD 103
                 E++  D
Sbjct: 123 DGVTNAEVVLGD 134


>gi|86153168|ref|ZP_01071373.1| putative methyltransferase [Campylobacter jejuni subsp. jejuni
          HB93-13]
 gi|56797621|emb|CAI38908.1| putative methyltransferase [Campylobacter jejuni]
 gi|85844053|gb|EAQ61263.1| putative methyltransferase [Campylobacter jejuni subsp. jejuni
          HB93-13]
          Length = 257

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLT 67
           +  HY   P             +L+K+             + ++E+GAG G LT+ML  
Sbjct: 8  EVAKHYHNRPAYS--------PFLLEKLVACINDKNKNFKDLNIVEVGAGTGKLTKMLGE 59

Query: 68 LGARKVIVIEKDQQFFPILKDISSQHPN 95
          +   ++  +E +       +  +    N
Sbjct: 60 MFGCQISAVEPNDNMREEGQKFTQNLSN 87


>gi|82594756|ref|XP_725559.1| protein arginine n-methyltransferase [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23480611|gb|EAA17124.1| probable protein arginine n-methyltransferase [Plasmodium yoelii
           yoelii]
          Length = 383

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQHPN 95
             I ++   +    V+++G G G L+      GA+ V  IEK    +  L    ++   +
Sbjct: 51  DAIRKNEHLIKDKIVLDVGCGTGILSFFAAKHGAKHVYSIEKSNIIYTALNIRDANNLTD 110

Query: 96  RLEIIQD 102
           ++  I+ 
Sbjct: 111 KITFIKG 117


>gi|321441967|gb|ADW85398.1| arg methyltransferase [Amauta cacica]
          Length = 244

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G  V++IG G G L+      GA KVI +E         + I  +++  N +EI++
Sbjct: 19  HLFKGKVVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLDNIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|307244523|ref|ZP_07526628.1| methyltransferase domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306492050|gb|EFM64098.1| methyltransferase domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 267

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            ++E+  G GN+T  L   G   +  I+  +    +  + S      L +++ D +++DF
Sbjct: 40  NILELACGTGNITIPLAKKGYD-IAGIDISEDMLGLALEKSEAMGVPLVLLEQDMVELDF 98

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
              +++   +       Y      L+   +
Sbjct: 99  -DLYDLDCVLCACDGFNYVTSLDDLYKVFA 127


>gi|302685103|ref|XP_003032232.1| hypothetical protein SCHCODRAFT_109068 [Schizophyllum commune H4-8]
 gi|300105925|gb|EFI97329.1| hypothetical protein SCHCODRAFT_109068 [Schizophyllum commune H4-8]
          Length = 1012

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK--DQQFFPILKDISSQH 93
           L +  +      G  +++IGAG G+  + L T    +V  +E   D      L +     
Sbjct: 794 LDRAVDRLALPSGAHILDIGAGYGSTGRYLHTEHGLRVTGLELQKDIHDVAALINARQTM 853

Query: 94  P-NRLEIIQDDALK 106
           P + +  +Q D L 
Sbjct: 854 PADAIRAVQGDILD 867


>gi|94501527|ref|ZP_01308045.1| cyclopropane-fatty-acyl-phospholipid synthase [Oceanobacter sp.
           RED65]
 gi|94426345|gb|EAT11335.1| cyclopropane-fatty-acyl-phospholipid synthase [Oceanobacter sp.
           RED65]
          Length = 420

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            LN LK I E         V+EIG G G            KV      ++ + + K+   
Sbjct: 181 SLNKLKTICERLHLTADDHVVEIGTGWGGFAVYAAKNYGCKVTTTTISEEQYNLAKERIK 240

Query: 92  QH--PNRLEIIQDDALKVD 108
           +H    ++ ++++D  K++
Sbjct: 241 EHGLEGQITLLKEDYRKLE 259


>gi|323126438|gb|ADX23735.1| ribosomal protein L11 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|322411014|gb|EFY01922.1| ribosomal protein L11 methyltransferase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|317500653|ref|ZP_07958872.1| mycothiol-dependent formaldehyde dehydrogenase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897971|gb|EFV20023.1| mycothiol-dependent formaldehyde dehydrogenase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 347

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           A  S   +  TV+ IG GP  +  +L        K+I+ E D +    +K+    +P+ L
Sbjct: 160 ARISEIGEEDTVVIIGGGPTGICTLLCVMLKNPAKIILCEVDPERIAFVKE---HYPDVL 216

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
            +   +  + D E+F   +S       +    G+   F        P    ++  L+++
Sbjct: 217 VV---NPKETDAERFVKENSRHNGADRVLEVAGSSDTFELAWKVARPNAIVTVVALYEE 272


>gi|306826579|ref|ZP_07459886.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           ATCC 10782]
 gi|304431217|gb|EFM34219.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           ATCC 10782]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|294670650|ref|ZP_06735526.1| hypothetical protein NEIELOOT_02373 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307620|gb|EFE48863.1| hypothetical protein NEIELOOT_02373 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 295

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
               G +V++ G G G LT   L LGA   + ++ D Q         +   NR+E
Sbjct: 160 NLKGGESVLDYGCGSGILTIAALKLGAASAVGVDIDPQAIA--AGTGNAVQNRVE 212


>gi|257877048|ref|ZP_05656701.1| ribosomal protein L11 methyltransferase [Enterococcus casseliflavus
           EC20]
 gi|257811214|gb|EEV40034.1| ribosomal protein L11 methyltransferase [Enterococcus casseliflavus
           EC20]
          Length = 315

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
              G TV+++G G G L+     LGA+ V   + D+      ++  + +P  + + +  +
Sbjct: 173 LRGGETVLDVGTGSGVLSIASKYLGAKDVFAYDLDEVAVRSAQENMAMNPIAHDVTVQAN 232

Query: 103 DALK 106
           D L+
Sbjct: 233 DLLQ 236


>gi|251781648|ref|YP_002995950.1| ribosomal protein L11 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390277|dbj|BAH80736.1| ribosomal protein L11 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|182679615|ref|YP_001833761.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635498|gb|ACB96272.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 230

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            ++L ++  +        V+EIG G G  T +L  +  R+V+  E+
Sbjct: 78  PSLLARMIAALDLSPRHRVLEIGTGSGYATAVLSHI-VREVVSFER 122


>gi|168014320|ref|XP_001759700.1| protein arginine N-methyltransferase [Physcomitrella patens subsp.
           patens]
 gi|162689239|gb|EDQ75612.1| protein arginine N-methyltransferase [Physcomitrella patens subsp.
           patens]
          Length = 383

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDD 103
           +G  V+++GAG G L+       A+ V  +E         + + + +     R+ +I   
Sbjct: 57  EGKIVVDVGAGSGILSLFAAQASAKHVYAVEA-SAMAEYARKLIAGNHPLSQRITVIHGK 115

Query: 104 ALKVDFEKFFNI 115
             +V+  +  +I
Sbjct: 116 VEEVELPEKADI 127


>gi|153815899|ref|ZP_01968567.1| hypothetical protein RUMTOR_02144 [Ruminococcus torques ATCC 27756]
 gi|145846718|gb|EDK23636.1| hypothetical protein RUMTOR_02144 [Ruminococcus torques ATCC 27756]
          Length = 347

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           A  S   +  TV+ IG GP  +  +L        K+I+ E D +    +K+    +P+ L
Sbjct: 160 ARISEIGEEDTVVIIGGGPTGICTLLCVMLKNPAKIILCEVDPERIAFVKE---HYPDVL 216

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
            +   +  + D E+F   +S       +    G+   F        P    ++  L+++
Sbjct: 217 VV---NPKETDAERFVKENSRHNGADRVLEVAGSSDTFELAWKVARPNAIVTVVALYEE 272


>gi|144898519|emb|CAM75383.1| SAM-dependent methyltransferases [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 229

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
          +       V+E+G G G     L T G R  I ++ D     I
Sbjct: 39 AQFTPACRVLELGCGTGAFLAYLDTKGIRGSIGVDHDPALAEI 81


>gi|139474465|ref|YP_001129181.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           str. Manfredo]
 gi|166223496|sp|A2RGK2|PRMA_STRPG RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|134272712|emb|CAM30984.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           str. Manfredo]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|187478940|ref|YP_786964.1| bifunctional biotin synthesis protein BioCD [Bordetella avium
          197N]
 gi|115423526|emb|CAJ50061.1| bifunctional biotin synthesis protein BioCD [Bordetella avium
          197N]
          Length = 465

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            + ++IA  +       ++EIG G G LT+ L   
Sbjct: 33 EALAERIAALALPAK-PRILEIGCGTGLLTRALARR 67


>gi|94991270|ref|YP_599370.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|166223494|sp|Q1JET3|PRMA_STRPD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|94544778|gb|ABF34826.1| Ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|94995182|ref|YP_603280.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|166223495|sp|Q1J4K0|PRMA_STRPF RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|94548690|gb|ABF38736.1| Ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|94989325|ref|YP_597426.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94993213|ref|YP_601312.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|166223492|sp|Q1J9P3|PRMA_STRPB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223493|sp|Q1JJU1|PRMA_STRPC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|94542833|gb|ABF32882.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94546721|gb|ABF36768.1| Ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|71904342|ref|YP_281145.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|123639171|sp|Q48R70|PRMA_STRPM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|71803437|gb|AAX72790.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS6180]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|52078773|ref|YP_077564.1| hypothetical protein BL01679 [Bacillus licheniformis ATCC 14580]
 gi|52784143|ref|YP_089972.1| hypothetical protein BLi00320 [Bacillus licheniformis ATCC 14580]
 gi|319648934|ref|ZP_08003143.1| hypothetical protein HMPREF1012_04182 [Bacillus sp. BT1B_CT2]
 gi|52001984|gb|AAU21926.1| putative methyltransferase [Bacillus licheniformis ATCC 14580]
 gi|52346645|gb|AAU39279.1| hypothetical protein BLi00320 [Bacillus licheniformis ATCC 14580]
 gi|317388928|gb|EFV69746.1| hypothetical protein HMPREF1012_04182 [Bacillus sp. BT1B_CT2]
          Length = 694

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 19/125 (15%)

Query: 11  KTILSHYKII-PKK----YMGQN---FLLDLNIL----KKIAESSGSLDGITVIEIGAGP 58
           + I+  Y     +K     + QN   +L D+N      KKIA+ +    G  +++IGAG 
Sbjct: 389 RAIVLLYDFFEFRKDSFDRL-QNEAAYLSDMNGAEDYKKKIADYAV---GERMLDIGAGG 444

Query: 59  GNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
           G +  +L       +VI I+        L+    +      + Q DAL  D  ++F   S
Sbjct: 445 GVMLDLLTDQHPEAEVIGIDLSVNVIEELQKRKVREHKPWHVKQADAL--DLPEYFEQES 502

Query: 118 PIRII 122
              I+
Sbjct: 503 VDTIV 507


>gi|21905459|gb|AAM80317.1| putative methyltransferase [Streptococcus pyogenes MGAS315]
          Length = 260

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 112 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 171

Query: 103 DALK 106
           D LK
Sbjct: 172 DLLK 175


>gi|50915046|ref|YP_061018.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|60390306|sp|Q5X9S8|PRMA_STRP6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|50904120|gb|AAT87835.1| Ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|15607057|ref|NP_214439.1| ribosomal protein L11 methyltransferase [Aquifex aeolicus VF5]
 gi|38605117|sp|O67870|PRMA_AQUAE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|2984305|gb|AAC07828.1| ribosomal protein L11 methyltransferase [Aquifex aeolicus VF5]
          Length = 245

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 33/58 (56%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +G+TV+++G G G L  +   LGA++V+ I+ D++     ++ +  +  ++E  + 
Sbjct: 112 LKEGMTVLDVGTGSGILAIVSALLGAKRVVGIDIDEKAVNECRENAELNKVKVECFRA 169


>gi|28896622|ref|NP_802972.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           SSI-1]
 gi|161485734|ref|NP_665514.2| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS315]
 gi|38605333|sp|Q8K5Q9|PRMA_STRP3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|28811876|dbj|BAC64805.1| putative methyltransferase [Streptococcus pyogenes SSI-1]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|19746891|ref|NP_608027.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS8232]
 gi|38605358|sp|Q8NZ98|PRMA_STRP8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|19749136|gb|AAL98526.1| putative methyltransferase [Streptococcus pyogenes MGAS8232]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|56808291|ref|ZP_00366056.1| COG2264: Ribosomal protein L11 methylase [Streptococcus pyogenes
           M49 591]
 gi|209560118|ref|YP_002286590.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           NZ131]
 gi|226710121|sp|B5XIN3|PRMA_STRPZ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|209541319|gb|ACI61895.1| Ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           NZ131]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + ++    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|67483387|ref|XP_656965.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56474200|gb|EAL51583.1| hypothetical protein EHI_152460 [Entamoeba histolytica HM-1:IMSS]
          Length = 328

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE---KDQQFFPILKDISSQHPNRLEIIQ 101
            + G  V+++G G G L+      GA++V  +E     +Q   I+K   + + N + +IQ
Sbjct: 49  VVKGKIVLDVGCGTGILSMFAARNGAKRVYAVEMSSVRKQAAEIIK--LNGYENVITLIQ 106

Query: 102 DDALKVDFEKFFNI 115
               +VD  +  +I
Sbjct: 107 GKMEEVDIPEKVDI 120


>gi|71004716|ref|XP_757024.1| hypothetical protein UM00877.1 [Ustilago maydis 521]
 gi|46096394|gb|EAK81627.1| hypothetical protein UM00877.1 [Ustilago maydis 521]
          Length = 482

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           + I  ++       V+++GAG G L+      GA+KV  +E        L+ + 
Sbjct: 59  RAILNNARDFQDKVVMDVGAGNGILSFFSAQAGAKKVFAVEA-SNMVECLQKVV 111


>gi|331697124|ref|YP_004333363.1| tRNA (adenine-N(1)-)-methyltransferase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951813|gb|AEA25510.1| tRNA (adenine-N(1)-)-methyltransferase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 310

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDISSQHPNRL 97
               G  V+E GAG G LT  LL     A  V   E  +         ++     HP   
Sbjct: 129 DVFPGARVLEAGAGSGALTCSLLQAVGPAGTVTSYEIREDHLRHAETNVEKFFGDHPPNW 188

Query: 98  EIIQDD 103
            +   D
Sbjct: 189 SLRLGD 194


>gi|321441975|gb|ADW85402.1| arg methyltransferase [Axia margarita]
          Length = 244

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAVEC-SNIVDYARKIIEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|320161074|ref|YP_004174298.1| putative ubiquinone/menaquinone biosynthesis methyltransferase
           [Anaerolinea thermophila UNI-1]
 gi|319994927|dbj|BAJ63698.1| putative ubiquinone/menaquinone biosynthesis methyltransferase
           [Anaerolinea thermophila UNI-1]
          Length = 218

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL-EIIQ 101
              L G TV+E+G G G L + L    +RK+I I+   Q     +   + H N    +IQ
Sbjct: 43  IPFLPGETVLELGCGTGYLMRAL--RSSRKIIGIDLSPQMIRQTRKRVNIHNNAFPFLIQ 100

Query: 102 DD 103
            D
Sbjct: 101 AD 102


>gi|242094784|ref|XP_002437882.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor]
 gi|241916105|gb|EER89249.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor]
          Length = 209

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 33  LNILKKIAESSGSLDGI----TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            +I  ++  ++ +         V + G G G L      L A  V+ I+ D Q   + ++
Sbjct: 30  PHIASRMLYTAENSFDDITGKVVADFGCGCGTLAVGSALLEAEHVLGIDIDPQSLELAQE 89

Query: 89  ISSQHPNRLEIIQDDALKVD 108
            ++     ++++  D   ++
Sbjct: 90  NAADLELDIDLVWSDIKNLN 109


>gi|239930453|ref|ZP_04687406.1| hypothetical protein SghaA1_19676 [Streptomyces ghanaensis ATCC
           14672]
          Length = 257

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP 94
           +++ +      G TV++ G GPG     L         VI +++D       +  +    
Sbjct: 30  RQMLDLLDIRAGHTVLDAGCGPGTDLPALAERVGDGGTVIGVDRDPAMLERARARTEGL- 88

Query: 95  NRLEIIQDDA 104
            R+E+ + D 
Sbjct: 89  RRVELREGDV 98


>gi|261856422|ref|YP_003263705.1| methionine biosynthesis protein MetW [Halothiobacillus neapolitanus
           c2]
 gi|261836891|gb|ACX96658.1| methionine biosynthesis protein MetW [Halothiobacillus neapolitanus
           c2]
          Length = 200

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+++G G G L   L+       + +E D         ++S     L IIQ+D 
Sbjct: 13  ITSKSRVLDLGCGDGALLSHLIERRQVSAVGLELDDD------KVASGIERGLNIIQEDL 66

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTR 132
                + F  +S    I++     +   
Sbjct: 67  DSGISDWFAPMSFDFVIVSQTIQAMRHP 94


>gi|171910213|ref|ZP_02925683.1| cyclopropane-fatty-acyl-phospholipid synthase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 428

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLE 98
                     V+EIG G G  +     +   +V  +   ++      +  ++    +R+E
Sbjct: 196 RKLRLQPTDHVLEIGCGWGGFSSHAARVHGCRVTAVTISEEQHRYATERMAREGLSDRVE 255

Query: 99  IIQDD 103
           I   D
Sbjct: 256 IRLQD 260


>gi|329923063|ref|ZP_08278579.1| methyltransferase domain protein [Paenibacillus sp. HGF5]
 gi|328941836|gb|EGG38121.1| methyltransferase domain protein [Paenibacillus sp. HGF5]
          Length = 258

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  ++E+G G G     L  +G  +V  I+ ++      +  +      +E +Q D 
Sbjct: 50  IQPGSRILEVGCGTGRTACHLSEMG-YQVTAIDLNENMIKKARARAEAMGMDVEFLQADV 108

Query: 105 LKVDFEK 111
             + FE 
Sbjct: 109 CALPFED 115


>gi|321441979|gb|ADW85404.1| arg methyltransferase [Chelepteryx collesi]
          Length = 244

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|319740457|gb|ADV60522.1| arg methyltransferase [Endromis versicolora]
          Length = 244

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAVEC-SNIVDYARKIIEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|313903465|ref|ZP_07836856.1| Methyltransferase type 11 [Thermaerobacter subterraneus DSM 13965]
 gi|313466286|gb|EFR61809.1| Methyltransferase type 11 [Thermaerobacter subterraneus DSM 13965]
          Length = 405

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                G  V+++  G G L   L TLGAR V  +++   F    ++ +++    +E +Q 
Sbjct: 46  LDLRPGEAVLDLACGHGRLAVPLATLGAR-VTGLDRSVGFLARAREEAARQGVEVEWVQG 104

Query: 103 DALKVDFEKFFN 114
           D  ++ +   F+
Sbjct: 105 DMRRLPWRDRFD 116


>gi|289192404|ref|YP_003458345.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus sp. FS406-22]
 gi|288938854|gb|ADC69609.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus sp. FS406-22]
          Length = 186

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 14/159 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                      V+++G G G +T  +     + V  I+  +    + K   +    +  I
Sbjct: 31  IGKLNLNKDDVVVDVGCGSGGMTVEIARRC-KFVYAIDYLEDAIEVTKQNLA----KFNI 85

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
                +K   E   +     ++  N  +  GT+ +   I           +      E  
Sbjct: 86  KNCQIIKGRAEDILD-----KLEFNKAFIGGTKNIRKIIEILDKKKINHIVANTIVLENA 140

Query: 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
            +I  +  S  Y   +V        +    I     F +
Sbjct: 141 VKIINEFESRGYNVDAVNI----TVSYAKKIPSGHMFLA 175


>gi|237732561|ref|ZP_04563042.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908100|gb|EEH94018.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 268

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IG G G L  ML       VI   +E D       ++  +Q P  +R+ 
Sbjct: 63  APVAGVKRILDIGTGSGLLALMLAQRTDENVIIDAVELDVDAAQQAQENIAQSPWMHRVS 122

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  +DA +    +         II+N PY 
Sbjct: 123 VHTEDAQQWIPRQTVRFD---LIISNPPYY 149


>gi|295668813|ref|XP_002794955.1| lovastatin nonaketide synthase [Paracoccidioides brasiliensis Pb01]
 gi|226285648|gb|EEH41214.1| lovastatin nonaketide synthase [Paracoccidioides brasiliensis Pb01]
          Length = 2735

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 28   NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI---EKDQQFFP 84
            NF     I + +A+++     + ++EIGAG G  T+ ++             +    FF 
Sbjct: 1219 NF-----IAEVVAQAAHRYPRMNILEIGAGTGGATKRVINKLGDAFTSYTFTDISTGFFE 1273

Query: 85   ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
              +D+ S + +R+     DA K    + +   S   I+A+L  +    L++  
Sbjct: 1274 TARDVFSDYSDRMVFKALDAEKDIVAQGYEEHSYDLIVASLVLHATKDLVYTM 1326


>gi|225562596|gb|EEH10875.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 336

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            ++   V+E+G+G G L+   L  LGAR+V   ++D      +KD + ++ 
Sbjct: 169 LIEEKNVVELGSGTGLLSMYCLKCLGARRVTATDRDPALISSIKDCAIRND 219


>gi|225021454|ref|ZP_03710646.1| hypothetical protein CORMATOL_01474 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681494|ref|ZP_07404301.1| tRNA methyltransferase complex GCD14 subunit [Corynebacterium
           matruchotii ATCC 14266]
 gi|224945836|gb|EEG27045.1| hypothetical protein CORMATOL_01474 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659699|gb|EFM49199.1| tRNA methyltransferase complex GCD14 subunit [Corynebacterium
           matruchotii ATCC 14266]
          Length = 279

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
            +I        G  V+E GAG G LT  LL       +VI  E         +    Q+
Sbjct: 89  AQILTEGDIFPGARVLEAGAGSGALTISLLRAVGDTGQVISYEIRPDHLEYAEKNVDQY 147


>gi|170693612|ref|ZP_02884770.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia graminis
           C4D1M]
 gi|170141394|gb|EDT09564.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia graminis
           C4D1M]
          Length = 260

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 14/135 (10%)

Query: 46  LDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
            +   V+EIG G G  T  +     A   + +E  +     +LK +  Q    + IIQ D
Sbjct: 83  REAPRVLEIGFGMGATTAEIAAHRPADDFLGVEVHEPGVGALLKLMGEQSLTNIRIIQHD 142

Query: 104 ALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           A++V  +                P     +    +        +++   P  +      +
Sbjct: 143 AVEVLEQMIAPDSLDGVHIFFPDPWHKARHHKRRLIQPKFVALLASRLKPGAYLHCATDW 202

Query: 155 Q---KEVGERITAQK 166
           Q   +++ E ++A+ 
Sbjct: 203 QNYAEQMLEVLSAEP 217


>gi|126737575|ref|ZP_01753305.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter sp.
           SK209-2-6]
 gi|126720968|gb|EBA17672.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter sp.
           SK209-2-6]
          Length = 447

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 17/116 (14%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
             + +  G+  G  V+EIG G G   +        +V  +   Q+ +   K   ++    
Sbjct: 218 ASMVDQMGAKPGDHVLEIGCGWGGFAEYAAKERGLRVTGLTLSQEQYDYAKARIARAGLS 277

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           +++E    D                R  +     I +  +F  +    WP ++  +
Sbjct: 278 DQVEFRIQD---------------YRDCSGRFDGIASIEMFEAVGQKYWPTYFNCI 318


>gi|187478472|ref|YP_786496.1| protein-L-isoaspartate O-methyltransferase [Bordetella avium 197N]
 gi|123514820|sp|Q2L008|PIMT_BORA1 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|115423058|emb|CAJ49589.1| protein-L-isoaspartate O-methyltransferase [Bordetella avium 197N]
          Length = 264

 Score = 36.7 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQ 92
           + + IA    +     V+E+GAG G     +L    R+V  IE+ +  + + +    + +
Sbjct: 117 VARMIAAVCEARAPSRVLEVGAGCGY-QAAVLAQFVREVHSIERIRGLYELARANLRALR 175

Query: 93  HPNRLEIIQDD 103
              R+ +I  D
Sbjct: 176 LSTRVRLIYGD 186


>gi|322378261|ref|ZP_08052744.1| adenine-specific methyltransferase [Streptococcus sp. M334]
 gi|321280814|gb|EFX57831.1| adenine-specific methyltransferase [Streptococcus sp. M334]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNR 96
           I E     + IT++E+G+G G L    LT  A+KV  + +E D     +   ++     +
Sbjct: 101 IVEELFKEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMADVIGLQ 160

Query: 97  LEIIQDDALK 106
              +Q DA++
Sbjct: 161 AGFVQGDAVR 170


>gi|320538975|ref|ZP_08038650.1| putative L-isoaspartate protein carboxylmethyltransferase type II
           [Serratia symbiotica str. Tucson]
 gi|320030908|gb|EFW12912.1| putative L-isoaspartate protein carboxylmethyltransferase type II
           [Serratia symbiotica str. Tucson]
          Length = 208

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ +         V+EIG G G  T +L  L  + V  +E+      +L+  + +
Sbjct: 61  PYMVARMTQLLNLTPTSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKVLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I   L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWASRGPFDAIIVTAAPTEIPQALMEQL 162


>gi|313499186|gb|ADR60552.1| CfaA [Pseudomonas putida BIRD-1]
          Length = 421

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 36/169 (21%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L++I +         ++EIG+G G+L     T    +V            L +  +Q+ +
Sbjct: 182 LERICQKLELSPDDHLLEIGSGWGSLAIHAATRYGCRVTT--------TTLSE--AQYSH 231

Query: 96  RLEIIQD-------DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            LE ++          L+ D+         +  I               +     P ++ 
Sbjct: 232 TLERVKALGLGQRVQVLREDYRDLQGTFDKLVSIEM----------IEAVGHRYLPVYFR 281

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
               L + E    + A         +++      +A    D      FP
Sbjct: 282 QCASLLKPEGLMLLQA---------ITIRDQRYAQAQRSVDFIQRYIFP 321


>gi|311278282|ref|YP_003940513.1| protein-L-isoaspartate O-methyltransferase [Enterobacter cloacae
           SCF1]
 gi|308747477|gb|ADO47229.1| protein-L-isoaspartate O-methyltransferase [Enterobacter cloacae
           SCF1]
          Length = 208

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPESRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKSLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWESL 150
              +L++        D  + +   +P    I+   P  I   L+                
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQAKAPFDAIIVTAAPPEIPQALMSQLAEGGILVLPVGDE 175

Query: 151 TLLFQK 156
             + Q+
Sbjct: 176 QQVLQR 181


>gi|258626039|ref|ZP_05720895.1| Ribose import ATP-binding protein rbsA [Vibrio mimicus VM603]
 gi|258581690|gb|EEW06583.1| Ribose import ATP-binding protein rbsA [Vibrio mimicus VM603]
          Length = 493

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 233 RRKTLRQSLKRLGGENLLHQAG--IETNLRAENLSI--EDFCRITNILT 277
           RR  +    +    + LL   G  I+ + R E LS+  +    I   L 
Sbjct: 108 RRSLISNRARERQSKPLLELLGVGIDPSQRVETLSLGEQQLVEIAKALA 156


>gi|258653016|ref|YP_003202172.1| type 11 methyltransferase [Nakamurella multipartita DSM 44233]
 gi|258556241|gb|ACV79183.1| Methyltransferase type 11 [Nakamurella multipartita DSM 44233]
          Length = 264

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 37  KKIAES----SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
           +++A +            V+++G G G +T+ +        V+ ++   +     +  + 
Sbjct: 17  RRLARATLGQLSLAGDERVLDVGCGDGYITRAIAARLPGGSVLGLDASPRMIAAARSHAD 76

Query: 92  QHPNRLEIIQDDALKVDFEKFFNI 115
               R+     D L +     F++
Sbjct: 77  PPGARVAFEVGDVLGLTAVDEFDV 100


>gi|300021770|ref|YP_003754381.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523591|gb|ADJ22060.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 345

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E+     G T I+   G G  T+ +L     +V+ +++D         + ++   RL ++
Sbjct: 31  ETLAPKAGETYIDGTFGAGGYTRAILEAADCRVLALDRDPNAIRGAAPLLAEFAPRLTLV 90

Query: 101 Q 101
           +
Sbjct: 91  E 91


>gi|170766157|ref|ZP_02900968.1| protein-L-isoaspartate O-methyltransferase [Escherichia albertii
           TW07627]
 gi|218547740|ref|YP_002381531.1| protein-L-isoaspartate O-methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|226702498|sp|B7LWJ2|PIMT_ESCF3 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|170125303|gb|EDS94234.1| protein-L-isoaspartate O-methyltransferase [Escherichia albertii
           TW07627]
 gi|218355281|emb|CAQ87888.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia fergusonii ATCC 35469]
 gi|324111376|gb|EGC05358.1| protein-L-isoaspartate O-methyltransferase [Escherichia fergusonii
           B253]
 gi|325496208|gb|EGC94067.1| protein-L-isoaspartate O-methyltransferase [Escherichia fergusonii
           ECD227]
          Length = 208

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQL 162


>gi|167764508|ref|ZP_02436629.1| hypothetical protein BACSTE_02897 [Bacteroides stercoris ATCC
           43183]
 gi|167697177|gb|EDS13756.1| hypothetical protein BACSTE_02897 [Bacteroides stercoris ATCC
           43183]
          Length = 856

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 16/111 (14%)

Query: 33  LNILKKIAESSGSLDGIT---VIEIGAGPGNLTQMLLTLGAR----KVIVIEKDQQFFPI 85
            +I   I ++       T   ++E   G GN    L+   +      + V++ D     I
Sbjct: 470 QDICFSIVKNLPEAKDYTELNILEPSIGVGNFLPTLIQKYSNIPIVNIDVVDIDSVSIEI 529

Query: 86  LKDISSQ--HPNRLEI--IQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           LK++  +   P+ + I  I  D L   F K ++I     ++ N PY   T+
Sbjct: 530 LKELVGKINIPSNVHINYIHADFLLYQFNKKYDI-----VVGNPPYKKLTK 575


>gi|158335894|ref|YP_001517068.1| methyltransferase [Acaryochloris marina MBIC11017]
 gi|158306135|gb|ABW27752.1| methyltransferase, putative [Acaryochloris marina MBIC11017]
          Length = 284

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 5/108 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDIS 90
             I  ++ E +    G TV++IG G G L             V  ++         +   
Sbjct: 31  PQICDRLLEYARIGAGQTVLDIGTGTGYLAIASAQRVGDQGHVTGVDISPGMLQQAQRKI 90

Query: 91  SQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
            +   + + + + DA  +D+         I      P+          
Sbjct: 91  QRLGLSNVVVQRADAEALDYPSHH--FDVILCAHTFPWMTDKAATLRL 136


>gi|126736202|ref|ZP_01751945.1| hypothetical protein RCCS2_10705 [Roseobacter sp. CCS2]
 gi|126714368|gb|EBA11236.1| hypothetical protein RCCS2_10705 [Roseobacter sp. CCS2]
          Length = 208

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFN 114
           G G  T   L LG R V  +E D  +   L D      +  R EII  D  KV       
Sbjct: 46  GSGGSTLEALKLG-RHVTAVESDPDWAKGLDDALGSLGYQGRYEIIPVDIGKVGKWGKPR 104

Query: 115 ISSPIRIIANL 125
             S        
Sbjct: 105 DGSGFESYHRY 115


>gi|26249149|ref|NP_755189.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           CFT073]
 gi|91212111|ref|YP_542097.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli UTI89]
 gi|117624978|ref|YP_853966.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli APEC
           O1]
 gi|191171186|ref|ZP_03032736.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli F11]
 gi|218559736|ref|YP_002392649.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli S88]
 gi|218690870|ref|YP_002399082.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli ED1a]
 gi|227888286|ref|ZP_04006091.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli 83972]
 gi|237706628|ref|ZP_04537109.1| L-isoaspartate O-methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|300976233|ref|ZP_07173330.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           200-1]
 gi|300976793|ref|ZP_07173610.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           45-1]
 gi|301049494|ref|ZP_07196452.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           185-1]
 gi|331658857|ref|ZP_08359799.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli TA206]
 gi|331684362|ref|ZP_08384954.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli H299]
 gi|30173065|sp|Q8FEJ8|PIMT_ECOL6 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|122422688|sp|Q1R7U8|PIMT_ECOUT RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|166220557|sp|A1AET7|PIMT_ECOK1 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|226702494|sp|B7MKL7|PIMT_ECO45 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|254782273|sp|B7MZ44|PIMT_ECO81 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|26109556|gb|AAN81759.1|AE016765_161 Protein-L-isoaspartate O-methyltransferase [Escherichia coli
           CFT073]
 gi|91073685|gb|ABE08566.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli UTI89]
 gi|115514102|gb|ABJ02177.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli APEC
           O1]
 gi|190908486|gb|EDV68075.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli F11]
 gi|218366505|emb|CAR04258.1| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli S88]
 gi|218428434|emb|CAR09361.2| L-isoaspartate protein carboxylmethyltransferase type II
           [Escherichia coli ED1a]
 gi|226899668|gb|EEH85927.1| L-isoaspartate O-methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|227834555|gb|EEJ45021.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli 83972]
 gi|294493667|gb|ADE92423.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli
           IHE3034]
 gi|300298725|gb|EFJ55110.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           185-1]
 gi|300308578|gb|EFJ63098.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           200-1]
 gi|300409979|gb|EFJ93517.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           45-1]
 gi|307554722|gb|ADN47497.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli ABU
           83972]
 gi|307625681|gb|ADN69985.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli UM146]
 gi|315289254|gb|EFU48649.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           110-3]
 gi|315293695|gb|EFU53047.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           153-1]
 gi|315298764|gb|EFU58018.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           16-3]
 gi|323951035|gb|EGB46911.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli H252]
 gi|323957042|gb|EGB52767.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli H263]
 gi|324005709|gb|EGB74928.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           57-2]
 gi|324015517|gb|EGB84736.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli MS
           60-1]
 gi|331053439|gb|EGI25468.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli TA206]
 gi|331077977|gb|EGI49183.1| protein-L-isoaspartate O-methyltransferase [Escherichia coli H299]
          Length = 208

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQL 162


>gi|325092531|gb|EGC45841.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
          Length = 327

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            ++   V+E+G+G G L+   L  LGAR+V   ++D      +KD + ++ 
Sbjct: 160 LIEEKNVVELGSGTGLLSMYCLKCLGARRVTATDRDPALISSIKDCAIRND 210


>gi|226525311|gb|ACO70910.1| conserved hypothetical protein [uncultured Verrucomicrobia
           bacterium]
          Length = 187

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            ++ G  V+++ AG G L    L+ GA  V  +EKD+     +     +      +   D
Sbjct: 37  DAVPGARVLDLFAGSGALGLEALSRGAASVTFVEKDRAAVATIHRNFEKTRLSGTVQAAD 96

Query: 104 ALKVDFEKFFNISSPIRIIANLPYN 128
                 ++F    S   I+A+ PY+
Sbjct: 97  VFSF-LDRFAAPESFDLILADPPYS 120


>gi|150402772|ref|YP_001330066.1| putative RNA methylase [Methanococcus maripaludis C7]
 gi|150033802|gb|ABR65915.1| putative RNA methylase [Methanococcus maripaludis C7]
          Length = 260

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
              G  V ++G G G L  M+    A+ V  +E D       K+   ++    + +I+DD
Sbjct: 32  VKSGNIVFDLGTGSGIL-AMIAAKNAKHVYAVELDPITTDYTKENIKENDFKNITVIEDD 90

Query: 104 ALKVDFEKFFNI 115
           A    F +  +I
Sbjct: 91  AAYYPFSEKADI 102


>gi|40806897|gb|AAR92208.1| polyketide synthase [Gibberella moniliformis]
          Length = 3650

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 30   LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
            L++  I    A+ +     + ++EIGAG G +T+ +L  
Sbjct: 1385 LVNKYIAHMTAQIAHRYPRMNILEIGAGTGGVTREILPR 1423


>gi|89896817|ref|YP_520304.1| precorrin-6Y C(5,15)-methyltransferase [Desulfitobacterium
           hafniense Y51]
 gi|89336265|dbj|BAE85860.1| precorrin-6Y C(5,15)-methyltransferase [Desulfitobacterium
           hafniense Y51]
          Length = 407

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 14/135 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLT---QMLLTLGARKVIVIEKDQQFFP-ILKDISSQHPNR 96
             +G +    V+++GAG G+++    +L   G   V  +E++ +    ILK+      + 
Sbjct: 246 AKAGIIPASRVLDVGAGTGSISIEAALLAHRGC--VYAVEENPEAQELILKNQEKFRVSN 303

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           L +I+  A             P   +           +   +      P   ++      
Sbjct: 304 LRLIRGSA------PLALQEIPP--VDVCIIGGSHGQIREILHQAPLVPGGRAVVTAVTL 355

Query: 157 EVGERITAQKNSPHY 171
           E          S  Y
Sbjct: 356 ETLAHGMEALKSLQY 370


>gi|154248083|ref|YP_001419041.1| hemolysin A [Xanthobacter autotrophicus Py2]
 gi|154162168|gb|ABS69384.1| hemolysin A [Xanthobacter autotrophicus Py2]
          Length = 266

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 41  ESSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQH 93
           ++ G      V +++GA  G  T++LL  GARKV  ++  +  F P L      H
Sbjct: 92  DAFGIDPAGKVALDVGASTGGFTEVLLRRGARKVYAVDVGRDQFHPRLAARPEVH 146


>gi|89073798|ref|ZP_01160305.1| hypothetical protein SKA34_16735 [Photobacterium sp. SKA34]
 gi|89050333|gb|EAR55834.1| hypothetical protein SKA34_16735 [Photobacterium sp. SKA34]
          Length = 201

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 4/117 (3%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDALKVDFEKFFN 114
           AG G L+   L+ GA  V ++E D++    L +++ +       ++  D+L    ++   
Sbjct: 70  AGSGGLSFEALSRGAESVTMLELDKKAANQLEQNLKTVGAKNATVVNGDSLTFLSQQ--G 127

Query: 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
            +  +  I         + +   +  + W      + +  +KE+G  IT   +   Y
Sbjct: 128 RAHDLVFIDPPFRKDLIQDVIAALENNGWLAPHAMIYIEAEKELGNLIT-PSHWHLY 183


>gi|86131772|ref|ZP_01050369.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Dokdonia
           donghaensis MED134]
 gi|85817594|gb|EAQ38768.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Dokdonia
           donghaensis MED134]
          Length = 213

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           E      G  V+EIG G G  T +L  LGA KV  IE+ Q+ +
Sbjct: 74  ELLEIEKGHNVLEIGTGSGYQTAVLCELGA-KVYSIERQQELY 115


>gi|321441987|gb|ADW85408.1| arg methyltransferase [Euclea delphinii]
          Length = 244

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
               G TV++IG G G L+      GA KVI IE         + I     NRL    DD
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAIEC-SNIVDYARKIVEA--NRL----DD 71

Query: 104 ALKVDFEKFFNISSPIRIIA 123
            +++   K   +  P+  + 
Sbjct: 72  IIEIVKGKVEEVELPVEKVD 91


>gi|319740463|gb|ADV60525.1| arg methyltransferase [Malacosoma americanum]
          Length = 244

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|311696141|gb|ADP99014.1| cyclopropane-fatty-acyl-phospholipid synthase [marine bacterium
           HP15]
          Length = 437

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQH 93
           L+ +        G+TV+E G G G L + +      KV      ++     ++     + 
Sbjct: 194 LEHVCRKLRLKPGMTVVEAGCGWGGLARYMARNYGVKVHSYNISREQLAFAREEARKQEL 253

Query: 94  PNRLEIIQDD 103
            + +E I+DD
Sbjct: 254 DHLVEYIEDD 263


>gi|307710911|ref|ZP_07647337.1| hypothetical protein SMSK321_1266 [Streptococcus mitis SK321]
 gi|307617267|gb|EFN96441.1| hypothetical protein SMSK321_1266 [Streptococcus mitis SK321]
          Length = 317

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNR 96
           I E       IT++E+G+G G L    LT  A+KV  + +E D     +   ++     +
Sbjct: 101 IVEELFKEKEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMADVIGLQ 160

Query: 97  LEIIQDDALK 106
              +Q DA++
Sbjct: 161 AGFVQGDAVR 170


>gi|262170356|ref|ZP_06038034.1| ABC-type sugar transport system ATP-binding protein [Vibrio mimicus
           MB-451]
 gi|261891432|gb|EEY37418.1| ABC-type sugar transport system ATP-binding protein [Vibrio mimicus
           MB-451]
          Length = 493

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 233 RRKTLRQSLKRLGGENLLHQAG--IETNLRAENLSI--EDFCRITNILT 277
           RR  +    +    + LL   G  I+ + R E LS+  +    I   L 
Sbjct: 108 RRSLISNRARERQSKPLLELLGVEIDPSQRVETLSLGEQQLVEIAKALA 156


>gi|291614646|ref|YP_003524803.1| methyltransferase type 11 [Sideroxydans lithotrophicus ES-1]
 gi|291584758|gb|ADE12416.1| Methyltransferase type 11 [Sideroxydans lithotrophicus ES-1]
          Length = 270

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
                +   +S      TV+++  GPG L   L    A +V  I+  +    I ++   Q
Sbjct: 28  EQFADEAIAASNLKPNSTVLDVACGPGTLALRLAQQ-AGQVHGIDFSEAMLAIFRNKIEQ 86

Query: 93  HPNR-LEIIQDDALKVDFEK 111
             +R + +   DA  + +  
Sbjct: 87  AGHRNIALHCGDAQTLPYAD 106


>gi|229013532|ref|ZP_04170666.1| Ribosomal protein L11 methyltransferase [Bacillus mycoides DSM
           2048]
 gi|228747769|gb|EEL97638.1| Ribosomal protein L11 methyltransferase [Bacillus mycoides DSM
           2048]
          Length = 312

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G TVI++G G G L+     LGA  V   + D     
Sbjct: 173 VHPGDTVIDVGTGSGVLSIAAAKLGAASVQAYDLDPVAVE 212


>gi|254518879|ref|ZP_05130935.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226912628|gb|EEH97829.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 184

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 11/99 (11%)

Query: 3  MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
          MNN    +K +           +    L+D   L KI E        T+++IG G G  +
Sbjct: 1  MNNHKFDIKKLNKLNNPE---RLS---LID---LDKIIEELQLPKDSTIVDIGIGTGIFS 51

Query: 63 QM-LLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEI 99
          +  L  L   K +  +  +     +K+        RL I
Sbjct: 52 EAFLSKLPNSKGLGFDISEDMIKWVKENRKDASTGRLSI 90


>gi|213406353|ref|XP_002173948.1| HNRNP arginine N-methyltransferase [Schizosaccharomyces japonicus
           yFS275]
 gi|212001995|gb|EEB07655.1| HNRNP arginine N-methyltransferase [Schizosaccharomyces japonicus
           yFS275]
          Length = 339

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHP 94
             I ++     G  V+++G G G L+      GA+ V  I+         K+I       
Sbjct: 34  DAIMQNPHLFRGKVVLDVGCGTGILSMFCAKAGAKHVYGIDM-SNIIDKAKEIVKVNGLD 92

Query: 95  NRLEIIQD 102
           +R+ +++ 
Sbjct: 93  DRVTLLKG 100


>gi|171687415|ref|XP_001908648.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943669|emb|CAP69321.1| unnamed protein product [Podospora anserina S mat+]
          Length = 345

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 30 LLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
          L D     + +  I ++        V+++G G G L+      GA+ VI ++ 
Sbjct: 39 LKDEVRTRSYMNAIVQNKHIFKDKVVLDVGCGTGILSMFAAKAGAKHVIGVDM 91


>gi|56756030|gb|AAW26193.1| SJCHGC06041 protein [Schistosoma japonicum]
          Length = 360

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 8/98 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNR 96
           I        G  V E G G G+LT  L    L   +V   +   +   +     + H   
Sbjct: 94  IVGGLDLCPGKWVFEAGTGSGSLTHFLAQAILPHGRVHTFDFHSERIDLASKEFNSHS-- 151

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
                 D +K D     N   P       P  +   +L
Sbjct: 152 ----LGDIVKADMRDVCNEYFPSVGSELNPSGVDAVIL 185


>gi|71278896|ref|YP_270840.1| spermidine synthase [Colwellia psychrerythraea 34H]
 gi|71144636|gb|AAZ25109.1| spermine/spermidine synthase family protein [Colwellia
           psychrerythraea 34H]
          Length = 568

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF-----------PILK---- 87
           +GS     ++ IG G G   + +L    + V +I+ D +             P L     
Sbjct: 321 AGSARHDKILIIGGGDGLALRDVLKYNPKHVTLIDLDSELIDIFKQPKKQVNPRLASQIL 380

Query: 88  --DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
             + +S    R+ I + DA     +   +  +   II +LP +     L    S + +  
Sbjct: 381 QLNKNSLQDERVTIYRADAFIAINQLLEDRQTFDAIIVDLP-DPSHPDLNKLYSVNFYAR 439

Query: 146 F 146
            
Sbjct: 440 L 440


>gi|85117440|ref|XP_965258.1| hypothetical protein NCU08355 [Neurospora crassa OR74A]
 gi|28927064|gb|EAA36022.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 281

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNL---TQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +  KI +         +++IG G G L      +   G  ++  ++  +      +  
Sbjct: 23 PKLATKIVQWLDPQKDDVILDIGCGDGVLDFEIAQVFEGGRGRLHGVDSSRAMIQAAQKK 82

Query: 90 SSQHPN 95
          +S + +
Sbjct: 83 TSDNAH 88


>gi|291438811|ref|ZP_06578201.1| UbiE/COQ5 methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291341706|gb|EFE68662.1| UbiE/COQ5 methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 260

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP 94
           +++ +      G TV++ G GPG     L         VI +++D       +  +    
Sbjct: 33  RQMLDLLDIRAGHTVLDAGCGPGTDLPALAERVGDGGTVIGVDRDPAMLERARARTEGL- 91

Query: 95  NRLEIIQDDA 104
            R+E+ + D 
Sbjct: 92  RRVELREGDV 101


>gi|282917466|ref|ZP_06325219.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus D139]
 gi|283771285|ref|ZP_06344174.1| HemK protein [Staphylococcus aureus subsp. aureus H19]
 gi|282318668|gb|EFB49025.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus D139]
 gi|283459490|gb|EFC06583.1| HemK protein [Staphylococcus aureus subsp. aureus H19]
          Length = 278

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   I ++ + +H ++++ +  D
Sbjct: 107 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNIARNNAEKHQSQIQFLTGD 166

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
           ALK   ++   ++    +I+N PY
Sbjct: 167 ALKPLIKEGIKLNG---LISNPPY 187


>gi|229174242|ref|ZP_04301776.1| Methyltransferase type 11 [Bacillus cereus MM3]
 gi|228609260|gb|EEK66548.1| Methyltransferase type 11 [Bacillus cereus MM3]
          Length = 239

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G  V+EIG G G     +      KV  +EK++      KD  S     +++I+ + 
Sbjct: 38  GANVLEIGCGTGKTAAYMTKEYGYKVTAVEKNEIMIQKAKDRWSFEGIDIQLIEGNV 94


>gi|284989869|ref|YP_003408423.1| type 12 methyltransferase [Geodermatophilus obscurus DSM 43160]
 gi|284063114|gb|ADB74052.1| Methyltransferase type 12 [Geodermatophilus obscurus DSM 43160]
          Length = 179

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KDISSQHPNRLEII 100
                G  V+E+G G G L   LL   A +V+ +++          ++ ++    R+ + 
Sbjct: 17  VAPRPGERVLEVGCGHGVL-VALLAERAAEVVGVDRSPTMVTAAGRRNHAAVEAGRVRL- 74

Query: 101 QDDALKV----DFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           Q  AL             +S  +R +++    +   ++   ++
Sbjct: 75  QAAALHEADLGPHPFDVVVSFNVRALSDPAQAVTWDVVSRVLA 117


>gi|149190123|ref|ZP_01868399.1| protein-L-isoaspartate O-methyltransferase [Vibrio shilonii AK1]
 gi|148836012|gb|EDL52973.1| protein-L-isoaspartate O-methyltransferase [Vibrio shilonii AK1]
          Length = 207

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  +    V  +E+       L+  + +
Sbjct: 60  PYIVAKMTELLELSRETKVLEIGTGSGYQTAVLAQI-VEHVFSVER----IKSLQWDAKR 114

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI 119
              RL+I        D  + +    P 
Sbjct: 115 RLKRLDIYNVSTKHGDGWQGWKAKGPF 141


>gi|118617850|ref|YP_906182.1| RNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118569960|gb|ABL04711.1| RNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 354

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 6/75 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD----I 89
             +I        G  V++ GAG G LT  LL       +VI  E+        +      
Sbjct: 88  AAQIVHEGDIFPGARVLDAGAGSGALTLSLLRAVGPQGQVISYEQRADHAEHARRNVTNF 147

Query: 90  SSQHPNRLEIIQDDA 104
             + P   ++I  D 
Sbjct: 148 YGEAPENWQLIISDI 162


>gi|51473286|ref|YP_067043.1| glucose-inhibited division protein B [Rickettsia typhi str.
           Wilmington]
 gi|81610838|sp|Q68XT1|RSMG_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase G;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase; Short=16S rRNA m7G methyltransferase
 gi|51459598|gb|AAU03561.1| glucose inhibited division protein B [Rickettsia typhi str.
           Wilmington]
          Length = 191

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 13/131 (9%)

Query: 30  LLDLNIL-----KKIAESSGS-----LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           L+  N +     + I +S           I +++IG+G G    +L   G  KV +IE D
Sbjct: 27  LISDNTIPNFWQRHILDSLQLMQYISNKEIHLVDIGSGAGFPGIVLSIAGVAKVSLIEAD 86

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR---IIANLPYNIGTRLLFN 136
            +    L+  S    N ++II     K++ +              I N   NI  R  F 
Sbjct: 87  LRKCIFLEKASKISNNSIQIINQRIEKIEIDCNILTCRAFSNLNTIFNCTQNISVREKFL 146

Query: 137 WISADTWPPFW 147
            +    +    
Sbjct: 147 LLKGKNYLTEI 157


>gi|28493538|ref|NP_787699.1| O-methyltransferase-like protein [Tropheryma whipplei str. Twist]
 gi|28572350|ref|NP_789130.1| O-methyltransferase [Tropheryma whipplei TW08/27]
 gi|28410481|emb|CAD66867.1| putative O-methyltransferase [Tropheryma whipplei TW08/27]
 gi|28476580|gb|AAO44668.1| O-methyltransferase-like protein [Tropheryma whipplei str. Twist]
          Length = 205

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           I     +L    V+EIG G G   L  + +   A  +  IE +  F+   K+  + + + 
Sbjct: 43  IKTQVAALPAPQVLEIGTGIGLSALKMVSVNRKAH-ITTIEVNPDFYNRAKNNLTNYFSC 101

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANL 125
           L  I  +AL+V      N+   + I AN 
Sbjct: 102 LRFINSNALEVIPRMNRNMYDLVLIDANP 130


>gi|88803261|ref|ZP_01118787.1| hypothetical protein PI23P_11752 [Polaribacter irgensii 23-P]
 gi|88780827|gb|EAR12006.1| hypothetical protein PI23P_11752 [Polaribacter irgensii 23-P]
          Length = 213

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           ++     G  V+EIG G G  T +LL L A +V  IE+ Q+ F  
Sbjct: 74  QTLEIKGGDKVLEIGTGSGYQTAVLLELKA-EVYSIERQQELFKR 117


>gi|328955649|ref|YP_004372982.1| methyltransferase [Coriobacterium glomerans PW2]
 gi|328455973|gb|AEB07167.1| methyltransferase [Coriobacterium glomerans PW2]
          Length = 203

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 11/151 (7%)

Query: 37  KKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--- 91
             + E++  G + G  V++   G G L   +L+ GA     ++ D+Q   +++   +   
Sbjct: 34  ASMIEAALEGGIAGARVLDAFGGTGALGIEMLSRGASHATFVDSDRQAASLIRKNLASLG 93

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE-SL 150
             P    ++  DA  +        S    ++A+ PY  G  L ++ + A       +   
Sbjct: 94  ADPAVWSVLSADAPALAARGEVPGSPFDLVLADPPYLRGPDLTWDLLRALVNRSSLKPGA 153

Query: 151 TLLFQKEVGERITAQK-----NSPHYGRLSV 176
            + F+                    YG ++V
Sbjct: 154 VVSFEHAFAPAAPPPPDFVTLREKRYGAVAV 184


>gi|330821608|ref|YP_004350470.1| Cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           gladioli BSR3]
 gi|327373603|gb|AEA64958.1| Cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           gladioli BSR3]
          Length = 367

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 2/133 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP-NRLEII 100
           +  +DG  +++IG G G  +  L       +V+ +    +    ++  ++      L+I+
Sbjct: 127 AELVDGQRILDIGCGWGAQSLWLAERYRQSQVVGLTNSARQREFIEQRAAARGITNLKIV 186

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
             D    +F         +  I N  +    R L   IS          + L   + +  
Sbjct: 187 IGDVATYEFAAGDAGFDRVLSIENFEHMKNYRALLAKISHWMSDDGKLFVHLFAHRLIAY 246

Query: 161 RITAQKNSPHYGR 173
             TAQ  +    R
Sbjct: 247 HFTAQDGNDWMSR 259


>gi|327400508|ref|YP_004341347.1| Protein-L-isoaspartate O-methyltransferase [Archaeoglobus veneficus
           SNP6]
 gi|327316016|gb|AEA46632.1| Protein-L-isoaspartate O-methyltransferase [Archaeoglobus veneficus
           SNP6]
          Length = 221

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDIS 90
            +++  + E      G  V+E+G G G    ++  +  +  KVI IE+  +     K + 
Sbjct: 68  PHMVAIMCELLDLKPGEKVLEVGGGSGYHAAVVAEIVGKEGKVIAIERYPELAERAKKLL 127

Query: 91  SQH-PNRLEIIQDD 103
            +   + +EI+  D
Sbjct: 128 EELGYDNIEIVVGD 141


>gi|319649014|ref|ZP_08003223.1| hypothetical protein HMPREF1012_04262 [Bacillus sp. BT1B_CT2]
 gi|317389008|gb|EFV69826.1| hypothetical protein HMPREF1012_04262 [Bacillus sp. BT1B_CT2]
          Length = 214

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I     ++    V++ G G G L++ML    A  V  ++   +   I K+ +   P+ L 
Sbjct: 54  IFSLIETVKNQKVLDAGCGEGYLSRMLAAREA-VVTAVDYSTRMLEIAKERT---PDGLH 109

Query: 99  II--QDDA--LKVDFEKFFNISSPIRIIANLPYN 128
           I     +   L    E+ F+I     +I +L  +
Sbjct: 110 IHYRHGNCEDLHFLDEQSFDIIISNMVIQDLAND 143


>gi|291336630|gb|ADD96176.1| methyltransferase [uncultured organism MedDCM-OCT-S05-C185]
          Length = 141

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEII 100
              +    VI+  AG G L    L+ GA   I IE DQ     L+       + +R  II
Sbjct: 42  INIITRRIVIDAFAGSGALGLEALSRGAALSIFIENDQNALKTLEQNIRKLDYHHRARII 101

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNI 129
           + DA  +D            +I + PY +
Sbjct: 102 RADACTIDIPATEEAG---LVIMDPPYKL 127


>gi|289165001|ref|YP_003455139.1| hypothetical protein LLO_1665 [Legionella longbeachae NSW150]
 gi|288858174|emb|CBJ12040.1| hypothetical protein LLO_1665 [Legionella longbeachae NSW150]
          Length = 298

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 2/111 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +G  ++ I  G GN + ++   GA+ V   +KD      +K     +  R   +Q   L 
Sbjct: 61  EGKNILVI-PGHGNSSFLMALAGAKSVTAYDKDPVTIAWMKAFKKYYHYREYTVQGTPLA 119

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP-FWESLTLLFQK 156
              E F +++     + N+P     + LF  +  ++    +   +  L QK
Sbjct: 120 SIGELFTSLTYWYPTLVNIPGVKLIQFLFWILHPNSLRRAYIHYMVTLVQK 170


>gi|317051904|ref|YP_004113020.1| O-methyltransferase family 3 [Desulfurispirillum indicum S5]
 gi|316946988|gb|ADU66464.1| O-methyltransferase family 3 [Desulfurispirillum indicum S5]
          Length = 229

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 61/156 (39%), Gaps = 17/156 (10%)

Query: 11  KTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
           +T+ S++ I   +          ++ + ++  +      +++EIG G G  T  L+    
Sbjct: 33  RTVASNHGIPAVRS---------SVARLLSSLTALSRPRSILEIGTGAGFSTHALMEGAD 83

Query: 71  RKV----IVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKV--DFEKFFNISSPIRII 122
           RK     + +E + +   + + ++ +    NR++++  +AL+        F+      I 
Sbjct: 84  RKTLERFVTLEFNHKRLEVARQMAERLGWANRVQMLHTNALEFMACNRDDFDFIFVDAIK 143

Query: 123 ANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
            + P  +       W  A      +  L  + + EV
Sbjct: 144 RHYPIYMEYIRRLKWKVAVFDNVLYRGLVSMPRAEV 179


>gi|270160234|ref|ZP_06188890.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|269988573|gb|EEZ94828.1| conserved hypothetical protein [Legionella longbeachae D-4968]
          Length = 297

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 2/111 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +G  ++ I  G GN + ++   GA+ V   +KD      +K     +  R   +Q   L 
Sbjct: 60  EGKNILVI-PGHGNSSFLMALAGAKSVTAYDKDPVTIAWMKAFKKYYHYREYTVQGTPLA 118

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP-FWESLTLLFQK 156
              E F +++     + N+P     + LF  +  ++    +   +  L QK
Sbjct: 119 SIGELFTSLTYWYPTLVNIPGVKLIQFLFWILHPNSLRRAYIHYMVTLVQK 169


>gi|262401998|ref|ZP_06078563.1| ABC-type sugar transport system ATP-binding protein [Vibrio sp.
           RC586]
 gi|262351970|gb|EEZ01101.1| ABC-type sugar transport system ATP-binding protein [Vibrio sp.
           RC586]
          Length = 493

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 233 RRKTLRQSLKRLGGENLLHQAG--IETNLRAENLSI--EDFCRITNILT 277
           RR  +    +    + LL   G  I+ + R E LS+  +    I   L 
Sbjct: 108 RRSLISNRARERQSKPLLELLGVEIDPSQRVETLSLGEQQLVEIAKALA 156


>gi|260886980|ref|ZP_05898243.1| RNA methyltransferase, RsmD family [Selenomonas sputigena ATCC
           35185]
 gi|330839234|ref|YP_004413814.1| methyltransferase [Selenomonas sputigena ATCC 35185]
 gi|260863042|gb|EEX77542.1| RNA methyltransferase, RsmD family [Selenomonas sputigena ATCC
           35185]
 gi|329746998|gb|AEC00355.1| methyltransferase [Selenomonas sputigena ATCC 35185]
          Length = 190

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-- 91
           NIL +  E++       V+++ AG G L    L+ GA     +  D++   ++++ ++  
Sbjct: 34  NILGRRVEAA------HVLDLFAGTGALGLEALSRGAAS--ALFVDERTASLIEENAAKT 85

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           +   R E++  D L++         S   I  + PY  G
Sbjct: 86  RLLERAEVVCADVLRILTRLGGAGRSFNLIFCDPPYRQG 124


>gi|261822744|ref|YP_003260850.1| protein-L-isoaspartate O-methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261606757|gb|ACX89243.1| protein-L-isoaspartate O-methyltransferase [Pectobacterium wasabiae
           WPP163]
          Length = 208

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ K+ E         V+EIG G G  T +L  L  R V  +E+       L+  + +
Sbjct: 61  PYMVAKMTELLNLTPVSRVLEIGTGSGYQTAILAHL-VRHVCSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I   LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWASRGPFDAIIVTAAPPEIPRALLEQL 162


>gi|300777092|ref|ZP_07086950.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Chryseobacterium gleum ATCC 35910]
 gi|300502602|gb|EFK33742.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Chryseobacterium gleum ATCC 35910]
          Length = 216

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           E      G  V+EIG G G  T +L+ + A  V  +E+ +  F   K    +
Sbjct: 75  ELLKVKPGEKVLEIGTGCGYQTAVLMAMKAH-VYTVERQKDLFDFSKKKLRE 125


>gi|269797258|ref|YP_003311158.1| methyltransferase type 11 [Veillonella parvula DSM 2008]
 gi|269093887|gb|ACZ23878.1| Methyltransferase type 11 [Veillonella parvula DSM 2008]
          Length = 273

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
                ++++IGAGPG+ T        + V  IE  +    + K+ + +       II++ 
Sbjct: 65  LTPDSSMLDIGAGPGSFTIP-FAQHIKSVTAIEPSKGMVAVFKENAKELGVENFNIIEEM 123

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
              +  +  F+    +  I+ + + +   +    +  + +   + ++    
Sbjct: 124 VQDLPQDGSFDSQFDVVAISLVLW-MFPDVWPRILQMEQYSKGYCAIVAGI 173


>gi|307150475|ref|YP_003885859.1| type 11 methyltransferase [Cyanothece sp. PCC 7822]
 gi|306980703|gb|ADN12584.1| Methyltransferase type 11 [Cyanothece sp. PCC 7822]
          Length = 244

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE-IIQD 102
             +    ++E+G G G LTQ L+     +V+ I+   +   I +        RLE + + 
Sbjct: 35  NLIQTGLIVELGCGSGLLTQELVKAN-YQVLGIDISPEMIAIARQRLPNIEFRLESLFKA 93

Query: 103 DA 104
           D 
Sbjct: 94  DI 95


>gi|153009668|ref|YP_001370883.1| protein-L-isoaspartate O-methyltransferase [Ochrobactrum anthropi
           ATCC 49188]
 gi|151561556|gb|ABS15054.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 222

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDISSQHPN 95
            +   +     G  V+EIG G G  T  +++  A +V  +E+ ++     L+   S    
Sbjct: 76  ARAIAALKLEPGHRVLEIGTGSG-FTAAVMSSLAGRVTTVERYRKLCDHALQQFVSLKRE 134

Query: 96  RLEIIQDD 103
            + +   D
Sbjct: 135 NIMVKHAD 142


>gi|254285907|ref|ZP_04960869.1| ribose transport ATP-binding protein RbsA [Vibrio cholerae
           AM-19226]
 gi|262166721|ref|ZP_06034458.1| ABC-type sugar transport system ATP-binding protein [Vibrio mimicus
           VM223]
 gi|150424089|gb|EDN16028.1| ribose transport ATP-binding protein RbsA [Vibrio cholerae
           AM-19226]
 gi|262026437|gb|EEY45105.1| ABC-type sugar transport system ATP-binding protein [Vibrio mimicus
           VM223]
          Length = 493

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 233 RRKTLRQSLKRLGGENLLHQAG--IETNLRAENLSI--EDFCRITNILT 277
           RR  +    +    + LL   G  I+ + R E LS+  +    I   L 
Sbjct: 108 RRSLISNRARERQSKPLLELLGVEIDPSQRVETLSLGEQQLVEIAKALA 156


>gi|111021145|ref|YP_704117.1| hypothetical protein RHA1_ro04166 [Rhodococcus jostii RHA1]
 gi|110820675|gb|ABG95959.1| probable ubiquinone/menaquinone biosynthesis methyltransferase
           [Rhodococcus jostii RHA1]
          Length = 271

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ--FFPILKDISSQHPNRLE 98
            +     G + +++G+G G+ T+ L          I  D       + ++ + +  +  +
Sbjct: 45  AALHVQPGESALDLGSGTGSETRALAAAVTASGRAIGLDPNPGMALLARERAEEEGSTAQ 104

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            +  DA  +    F +    +     +  ++   
Sbjct: 105 FVIGDAYSL---PFPDDRLDVVRSERVFQHLSEP 135


>gi|70726339|ref|YP_253253.1| ribosomal protein L11 methyltransferase [Staphylococcus
           haemolyticus JCSC1435]
 gi|82581519|sp|Q4L6S8|PRMA_STAHJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|68447063|dbj|BAE04647.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 312

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
                +VI++G G G L+     LG +++  ++ D+    + K+  +++   + +E +  
Sbjct: 171 VDSDNSVIDVGTGSGILSIASHLLGVKRIKALDIDELAVNVAKENFAKNHCEDAIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKNETEKF 240


>gi|11497657|ref|NP_068877.1| L-isoaspartyl protein carboxyl methyltransferase (pcm-1)
           [Archaeoglobus fulgidus DSM 4304]
 gi|7388000|sp|O30199|PIMT1_ARCFU RecName: Full=Protein-L-isoaspartate O-methyltransferase 1;
           AltName: Full=L-isoaspartyl protein carboxyl
           methyltransferase 1; AltName: Full=Protein L-isoaspartyl
           methyltransferase 1; AltName:
           Full=Protein-beta-aspartate methyltransferase 1;
           Short=PIMT 1
 gi|2650620|gb|AAB91197.1| L-isoaspartyl protein carboxyl methyltransferase (pcm-1)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 216

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 11/131 (8%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +++  + E     +G  V+EIG G G    +T  ++      V+ +E+  +   I K  
Sbjct: 62  PHMVAIMCELLDLREGERVLEIGTGCGYHAAVTAEIVGKRGL-VVSVERIPELAEIAKRN 120

Query: 90  SSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPF 146
            S   + N + I+ D +L  +          I + A+ P +I   LL    I      P 
Sbjct: 121 LSALGYENVVVIVGDGSLGYEP---MAPYDKIYVTASAP-DIPKPLLEQLKIGGKMVIPI 176

Query: 147 WESLTLLFQKE 157
            E+   L+  E
Sbjct: 177 GETTQFLYVVE 187


>gi|15892780|ref|NP_360494.1| S-adenosyl-methyltransferase MraW [Rickettsia conorii str. Malish
           7]
 gi|20139037|sp|Q92HB4|RSMH_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|15619960|gb|AAL03395.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 307

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 29/69 (42%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L ++ E+     G + ++   G G  ++ +L      V  +++D       ++I   +  
Sbjct: 10  LNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQHYGE 69

Query: 96  RLEIIQDDA 104
           R + ++ + 
Sbjct: 70  RFDFVETNF 78


>gi|115359914|ref|YP_777052.1| trans-aconitate 2-methyltransferase [Burkholderia ambifaria AMMD]
 gi|115285202|gb|ABI90718.1| Trans-aconitate 2-methyltransferase [Burkholderia ambifaria AMMD]
          Length = 262

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 15/90 (16%)

Query: 32  DLNI--LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           D     ++ +  +       T I+IG GPGN T+ L+       V  I+         ++
Sbjct: 17  DERTRPVRDLLAAVPDTPIRTAIDIGCGPGNSTEALIARAPDATVRGIDASPDMIAAARE 76

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSP 118
                          AL+ D       S P
Sbjct: 77  RLP------------ALRFDLADVSTWSDP 94


>gi|158318484|ref|YP_001510992.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. EAN1pec]
 gi|158113889|gb|ABW16086.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. EAN1pec]
          Length = 402

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             I+  + E    L G  ++EIG G G    L   L   G   V  I+ D          
Sbjct: 78  PGIVAMMLEQLIVLPGQRILEIGTGTGYNAALLAHLAGPGGH-VTTIDIDPDITSAATSA 136

Query: 90  SSQHP-NRLEIIQDD 103
            +     ++ ++  D
Sbjct: 137 LAAAGFEKVTVLTGD 151


>gi|332670331|ref|YP_004453339.1| type 11 methyltransferase [Cellulomonas fimi ATCC 484]
 gi|332339369|gb|AEE45952.1| Methyltransferase type 11 [Cellulomonas fimi ATCC 484]
          Length = 282

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  V+E+GAG G  T  L+  GA  V  +E      P L  +       + + +  A
Sbjct: 65  LRPGARVVELGAGSGLATGPLVRAGA-TVTAVEP----GPALARLLRARWPDVTVHEATA 119

Query: 105 LKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
            +V      F+++     +  L  ++    L   +        W  +    Q  V
Sbjct: 120 ERVALPHASFDLAVAATSVHWLDLDVVLPKLHRALVPGGALAVWRHVFGDPQAPV 174


>gi|326382848|ref|ZP_08204538.1| methyltransferase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198438|gb|EGD55622.1| methyltransferase [Gordonia neofelifaecis NRRL B-59395]
          Length = 181

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
            L    V+++ AG G L    ++ GA   +++E D++   +L+D  +      ++ I+  
Sbjct: 41  DLSEARVLDLYAGTGALGIEAVSRGAASAVLVEADRRAAGVLRDNVAVCGAAAQVRIVNR 100

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               V+        +   I  + PY+I T  +   I+ 
Sbjct: 101 ---SVESFLAAPTGTFDLIFLDPPYDISTDEVNRAIAG 135


>gi|323137901|ref|ZP_08072976.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242]
 gi|322396904|gb|EFX99430.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242]
          Length = 346

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 36/87 (41%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L+++ ++     G   ++   G G  T+ +L     +V+ +++D       + +   
Sbjct: 21  PVLLREVIDALRPTPGGRYLDATFGAGGYTRAILAHPETRVLALDRDPNAVRDGRPLVEV 80

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI 119
              RL +++    ++D        +P+
Sbjct: 81  ARGRLTLVEARFSQLDEVARARGFAPL 107


>gi|320160178|ref|YP_004173402.1| hypothetical protein ANT_07680 [Anaerolinea thermophila UNI-1]
 gi|319994031|dbj|BAJ62802.1| hypothetical protein ANT_07680 [Anaerolinea thermophila UNI-1]
          Length = 341

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 67/192 (34%), Gaps = 27/192 (14%)

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF---- 113
            G+L    L  GA +V+ ++ D++F  + KD  S   N L II+ D L+ DF        
Sbjct: 162 TGSLGVACLAGGAARVVQVDIDRKFLNLAKD--SYSLNGLPIIKGDFLQEDFFHVAARMR 219

Query: 114 -NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE---VGERITAQKNSP 169
            N S    +I + PY   T      +  +      ++  L+ Q                 
Sbjct: 220 RNGSEYDIVIVDPPYFSRTAGGEVNLVDECVRVINKARPLVRQGGWLIAVNNALFLSGKD 279

Query: 170 HYGRLSVLTG--WRTKATMMFDISPH-VFFPSPKVTSTVIHFIPHLNPIPCCLESLKKIT 226
           +Y  L  L    +      + D+      +PS +V           NP P         T
Sbjct: 280 YYSTLKALCADGYLA-IEELLDVPEDITGYPSTRV-----------NPPPVDPSPFNHPT 327

Query: 227 QEA--FGKRRKT 236
           + A     R+KT
Sbjct: 328 KIAILRVMRKKT 339


>gi|319740473|gb|ADV60530.1| arg methyltransferase [Phiditia sp. JCR-2009]
          Length = 244

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
                 TV++IG G G L+      GA KVI +E         + I   +   + +EI++
Sbjct: 19  HLFKDKTVLDIGCGTGILSMFAAKAGASKVIAVEC-SNIVDYARKIVEANGLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|312876839|ref|ZP_07736816.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796354|gb|EFR12706.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 304

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 35/68 (51%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G+ V+++G G G L        A++V+ ++ D+    + ++ +  +   +EI ++D 
Sbjct: 166 VKPGMDVLDVGTGSGILAIAAKKFLAKRVLAVDIDEVAVKVAEENARLNGVEIEIKKNDL 225

Query: 105 LKVDFEKF 112
           ++   EKF
Sbjct: 226 VEGIEEKF 233


>gi|309813092|ref|ZP_07706816.1| tRNA methyltransferase complex GCD14 subunit [Dermacoccus sp.
           Ellin185]
 gi|308432896|gb|EFP56804.1| tRNA methyltransferase complex GCD14 subunit [Dermacoccus sp.
           Ellin185]
          Length = 402

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
           +I   +    G  V+E G G G L+  LL       ++   E+ + F  I    + + 
Sbjct: 104 QIVTMADIFPGARVVEAGVGSGALSMSLLRAVGEDGRLYSFERREDFAAIAAGNAREF 161


>gi|226294825|gb|EEH50245.1| lovastatin nonaketide synthase [Paracoccidioides brasiliensis Pb18]
          Length = 2934

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 28   NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI---EKDQQFFP 84
            NF     I + +A+++     + ++EIGAG G  T+ ++             +    FF 
Sbjct: 1418 NF-----IAEVVAQAAHRYPRMNILEIGAGTGGATKRVINKLGDAFTSYTFTDISTGFFE 1472

Query: 85   ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
              +D+ S + +R+     DA K    + +   S   I+A+L  +    L++  
Sbjct: 1473 TARDVFSDYSDRMIFKALDAEKDIVSQGYEEHSYDLIVASLVLHATKDLVYTM 1525


>gi|225678468|gb|EEH16752.1| lovastatin nonaketide synthase [Paracoccidioides brasiliensis Pb03]
          Length = 2934

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 28   NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI---EKDQQFFP 84
            NF     I + +A+++     + ++EIGAG G  T+ ++             +    FF 
Sbjct: 1418 NF-----IAEVVAQAAHRYPRMNILEIGAGTGGATKRVINKLGDAFTSYTFTDISTGFFE 1472

Query: 85   ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
              +D+ S + +R+     DA K    + +   S   I+A+L  +    L++  
Sbjct: 1473 TARDVFSDYSDRMIFKALDAEKDIVSQGYEEHSYDLIVASLVLHATKDLVYTM 1525


>gi|254436051|ref|ZP_05049558.1| methyltransferase, UbiE/COQ5 family [Nitrosococcus oceani AFC27]
 gi|207089162|gb|EDZ66434.1| methyltransferase, UbiE/COQ5 family [Nitrosococcus oceani AFC27]
          Length = 200

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 45/147 (30%), Gaps = 19/147 (12%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF--FPILKDISSQHPNRLE 98
             +    G  ++++G G G LTQ+          V+  D       + +  +++  ++ E
Sbjct: 36  RHAQLSPGEQILDVGCGTGVLTQLAAEKSGPSGKVVGVDPSLPMISLARKKAARAQSQAE 95

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
                           +   +         + + L+ + + A+      E +  +  K  
Sbjct: 96  FKLG------------VVERLPFGNETFDVVLSSLMLHHLPAELKRQGLEEIHRVL-KPG 142

Query: 159 GERIT---AQKNSPHYGRLSVLTGWRT 182
           G  +     +   P +  L V      
Sbjct: 143 GRLLAVDFDRPGHPLW-WLGVWPQLFM 168


>gi|156548304|ref|XP_001602562.1| PREDICTED: similar to protein-(glutamine-N5) methyl transferase,
           putative [Nasonia vitripennis]
          Length = 334

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 17/122 (13%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           L+D  +L +I++S+       ++EIG G G ++  +L       ++ I+ + +   +   
Sbjct: 127 LVD-FLLTRISDSAN--KNKNILEIGCGSGAISLSVLHSSQNANIVAIDVNPRACELTIR 183

Query: 89  ISS--QHPNRLEIIQDDALK-----------VDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            +       RL ++     K            + E+          I + P  I T+ +F
Sbjct: 184 NAKNLDLDMRLTVLNAAIQKDGKIEVKKAYGTNKEEVDFSKRKFDFIVSNPPYIPTKSVF 243

Query: 136 NW 137
             
Sbjct: 244 EL 245


>gi|120403278|ref|YP_953107.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119956096|gb|ABM13101.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1]
          Length = 282

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 19/127 (14%)

Query: 40  AESSGSLDGITVIEIGAGPGN----------------LTQMLLTLGARKVIVIEKDQQFF 83
             + G   G  V+++ AG GN                LT  L   G R       D ++ 
Sbjct: 46  VRACGIQAGDRVLDVAAGSGNAAIPAAEVGAIVTASDLTPELFGAGRRIAAERGVDLEWV 105

Query: 84  PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
               +         +++      +        +  +  +      IG   + NW      
Sbjct: 106 EADAESLPFADGSFDVVMSCVGAMFAPHHQATADELIRVCRPGGTIG---MVNWTPGGFI 162

Query: 144 PPFWESL 150
              + ++
Sbjct: 163 GNLFATM 169


>gi|328544944|ref|YP_004305053.1| methyltransferase type 11 [polymorphum gilvum SL003B-26A1]
 gi|326414686|gb|ADZ71749.1| Methyltransferase type 11 [Polymorphum gilvum SL003B-26A1]
          Length = 224

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
            ++       DG TV+E+G G G NL              I+   +         ++   
Sbjct: 34  DRLIARLDPGDGDTVLELGCGTGRNLIAAARRYPRTLFYGIDISSEMLDTAAANVARAGL 93

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            +R+ +   DA + D    F      R+  +   ++
Sbjct: 94  ADRIALGLGDASRYDAGDLFGRGRFDRVFFSYSLSM 129


>gi|323693236|ref|ZP_08107454.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14673]
 gi|323502719|gb|EGB18563.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14673]
          Length = 240

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  ++  +  ++   + K   SQ+  ++
Sbjct: 42  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SIVAFDYSKKMIELAKRRQSQYAKQI 100

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 101 EFCVADA 107


>gi|321442035|gb|ADW85432.1| arg methyltransferase [Urodus decens]
          Length = 244

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAVEC-SNIVDYARKIVEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|322374107|ref|ZP_08048641.1| adenine-specific methyltransferase [Streptococcus sp. C150]
 gi|321277073|gb|EFX54144.1| adenine-specific methyltransferase [Streptococcus sp. C150]
          Length = 318

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           V+EIG+G GNL + LL    + +  + +E D     +   I+    ++   IQ+DA++  
Sbjct: 113 VLEIGSGTGNLAETLLNNSHKNLNYMGMEVDDLLIDLSASIADVVNSKAVYIQEDAVRPH 172

Query: 109 FEKFFNISSPIRIIANLPYN-IGTRL 133
             K  ++      +   P + I +R 
Sbjct: 173 ILKESDVIISDLPVGYYPNDEIASRF 198


>gi|319740451|gb|ADV60519.1| arg methyltransferase [Acanthobrahmaea europaea]
 gi|319740465|gb|ADV60526.1| arg methyltransferase [Mirina christophi]
          Length = 244

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAVEC-SNIVDYARKIIEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|313673190|ref|YP_004051301.1| methyltransferase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939946|gb|ADR19138.1| methyltransferase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 168

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 29  FLLDLNI---LKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           FL + NI     K   +        +    V+++  G G      ++ GA+    I++D 
Sbjct: 8   FLKNSNIRPTTDKNRSAIFSILSDKVVDADVLDVCCGTGAFGIEAISRGAKSATFIDRDT 67

Query: 81  QFFPILKDISSQHPNRLEIIQDDALK 106
               +LK++         +I+ D LK
Sbjct: 68  S--NLLKNLQLIDGYNYTVIKGDFLK 91


>gi|302333763|gb|ADL23956.1| modification methylase HemK family protein [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 278

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   I ++ + +H ++++ +  D
Sbjct: 107 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNIARNNAEKHQSQIQFLTGD 166

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
           ALK   ++   ++    +I+N PY
Sbjct: 167 ALKPLIKEGIKLNG---LISNPPY 187


>gi|229521784|ref|ZP_04411202.1| ribose ABC transport system ATP-binding protein RbsA [Vibrio
           cholerae TM 11079-80]
 gi|229341378|gb|EEO06382.1| ribose ABC transport system ATP-binding protein RbsA [Vibrio
           cholerae TM 11079-80]
          Length = 493

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 233 RRKTLRQSLKRLGGENLLHQAG--IETNLRAENLSI--EDFCRITNILT 277
           RR  +    +    + LL   G  I+ + R E LS+  +    I   L 
Sbjct: 108 RRSLISNRARERQSKPLLELLGVEIDPSQRVETLSLGEQQLVEIAKALA 156


>gi|229157154|ref|ZP_04285234.1| Methyltransferase type 11 [Bacillus cereus ATCC 4342]
 gi|228626218|gb|EEK82965.1| Methyltransferase type 11 [Bacillus cereus ATCC 4342]
          Length = 252

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G  V+EIG G G     +      KV  +EK++      KD  S     +++I+ 
Sbjct: 51  GANVLEIGCGTGKTAAYMTKECGYKVTAVEKNEIMIQKAKDRWSFEGIDIQLIEG 105


>gi|226315044|ref|YP_002774940.1| pimeloyl-CoA synthesis protein [Brevibacillus brevis NBRC 100599]
 gi|226097994|dbj|BAH46436.1| pimeloyl-CoA synthesis protein [Brevibacillus brevis NBRC 100599]
          Length = 278

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
              D  +++EIG G G LT+++ +   A     +E  Q      K+   QH       Q 
Sbjct: 40  NENDVRSILEIGCGTGGLTRVIRSYFSAAHYEAVEIAQGMLEQAKNNLEQHGLICSFSQA 99

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           DA +  +E+       + +      
Sbjct: 100 DAEEWVWEQQAKSKD-LIVSGACFQ 123


>gi|254467183|ref|ZP_05080594.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I]
 gi|206688091|gb|EDZ48573.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I]
          Length = 330

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G  T+ LL  GA +VI +++D   F + K  + Q+ +RL + Q    ++D
Sbjct: 37  GAGGYTRGLLDAGADQVIAVDRDPLAFELAKPWAGQYGDRLILQQGVFSRMD 88


>gi|126735371|ref|ZP_01751117.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2]
 gi|126715926|gb|EBA12791.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2]
          Length = 297

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G  T+ LL  GA KVI +++D   F +  D    + +R++ +     K+D
Sbjct: 6   GNGGYTRALLAAGADKVIGVDRDPLAFEMAADWIGDYGDRIKTVAGVFSKLD 57


>gi|153212587|ref|ZP_01948334.1| ribose transport ATP-binding protein RbsA [Vibrio cholerae 1587]
 gi|229513639|ref|ZP_04403103.1| ribose ABC transport system ATP-binding protein RbsA [Vibrio
           cholerae TMA 21]
 gi|124116458|gb|EAY35278.1| ribose transport ATP-binding protein RbsA [Vibrio cholerae 1587]
 gi|229349516|gb|EEO14472.1| ribose ABC transport system ATP-binding protein RbsA [Vibrio
           cholerae TMA 21]
          Length = 493

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 233 RRKTLRQSLKRLGGENLLHQAG--IETNLRAENLSI--EDFCRITNILT 277
           RR  +    +    + LL   G  I+ + R E LS+  +    I   L 
Sbjct: 108 RRSLISNRARERQSKPLLELLGVEIDPSQRVETLSLGEQQLVEIAKALA 156


>gi|319775089|ref|YP_004137577.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           F3047]
 gi|329123000|ref|ZP_08251571.1| ribosomal protein L11 methyltransferase [Haemophilus aegyptius ATCC
           11116]
 gi|317449680|emb|CBY85886.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           F3047]
 gi|327471931|gb|EGF17371.1| ribosomal protein L11 methyltransferase [Haemophilus aegyptius ATCC
           11116]
          Length = 294

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   TVI+ G G G L    L LGA+  + I+ D Q     ++ + Q+   +RL++   
Sbjct: 156 DLKDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRNNAEQNGVADRLQLFLS 215

Query: 103 D 103
           D
Sbjct: 216 D 216


>gi|319897511|ref|YP_004135708.1| ribosomal protein l11 methyltransferase [Haemophilus influenzae
           F3031]
 gi|317433017|emb|CBY81388.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           F3031]
          Length = 294

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   TVI+ G G G L    L LGA+  + I+ D Q     ++ + Q+   +RL++   
Sbjct: 156 DLKDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRNNAEQNGVADRLQLFLS 215

Query: 103 D 103
           D
Sbjct: 216 D 216


>gi|297527098|ref|YP_003669122.1| hypothetical protein Shell_1121 [Staphylothermus hellenicus DSM
           12710]
 gi|297256014|gb|ADI32223.1| hypothetical protein Shell_1121 [Staphylothermus hellenicus DSM
           12710]
          Length = 182

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP--ILKDISSQH 93
           ++   E +    G  + ++GAG G +       GA  V  +E D  F     L+   +  
Sbjct: 14  VRNAMELARVGPGDILYDLGAGDGRVVVEAAKRGALAV-AVEIDPSFSALIRLRAREAGL 72

Query: 94  PNRLEIIQDDA 104
            +++ +++DD 
Sbjct: 73  DDKIIVLEDDF 83


>gi|224025726|ref|ZP_03644092.1| hypothetical protein BACCOPRO_02467 [Bacteroides coprophilus DSM
           18228]
 gi|224018962|gb|EEF76960.1| hypothetical protein BACCOPRO_02467 [Bacteroides coprophilus DSM
           18228]
          Length = 188

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-HPNRLEI 99
                 DG+T +++ AG G+++  L++ G  +VI +EKD Q +  ++ +  +   ++   
Sbjct: 38  NYIDFEDGVTALDLFAGTGSISIELVSRGCDRVISVEKDPQHYAFIRKVMEEVKTDKCFP 97

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
           ++ D  +              I A+ PY + 
Sbjct: 98  VRGDVFRYMERCHEQFD---FIFADPPYALS 125


>gi|198421513|ref|XP_002125257.1| PREDICTED: similar to Methyltransferase-like protein 5 [Ciona
           intestinalis]
          Length = 214

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDAL 105
           G  V ++G G G L+     LGA   + I+ D+    I +     +   N +E IQ D  
Sbjct: 49  GKNVCDLGCGCGILSIGSSLLGANHCLGIDIDEDALEIFQSNCEAYELNNVVECIQADIA 108

Query: 106 KVDFEKFFNISSPIRIIANLP 126
           +    +   ++     +   P
Sbjct: 109 RFSPSRNMILAKRFDTVLMNP 129


>gi|188585559|ref|YP_001917104.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350246|gb|ACB84516.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 423

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 24/150 (16%)

Query: 32  DLNILKK------------IAESSGSLDGITVIEIGAGPGNLTQM--LLTLGARKVIVIE 77
           D  I+K+            +        G  V +IGAG G ++     +     KV  +E
Sbjct: 231 DKEIIKRNVPRTKEEIRAVLVSKMNLYRGAVVWDIGAGTGAISLECSSMVGPQGKVCAVE 290

Query: 78  KDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-- 134
           +  +   ++K+  S+   N +EI+  +A          +  P R+I        T +L  
Sbjct: 291 RSTEALEVIKENKSKFQRNNIEIVAGEA----PGVLGELPPPDRVIVGGSSGQLTPILNY 346

Query: 135 FNWISADTWPPFWESL---TLLFQKEVGER 161
            N + + T P    ++   +     E  E 
Sbjct: 347 LNQLESFTGPVVISTVALESFYTAWEFFEN 376


>gi|159184877|ref|NP_354689.2| protein-L-isoaspartate O-methyltransferase [Agrobacterium
           tumefaciens str. C58]
 gi|159140157|gb|AAK87474.2| protein-L-isoaspartate O-methyltransferase [Agrobacterium
           tumefaciens str. C58]
          Length = 213

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           KI        G  V+EIG G G +T ++      +V  +E+ +      ++       R 
Sbjct: 67  KILARLQLKPGQRVLEIGTGSGFMTAIIARR-VERVFSLERYKTLVQQAQNCLDDLSIRN 125

Query: 98  EIIQD 102
            +I+ 
Sbjct: 126 VVIRQ 130


>gi|15643519|ref|NP_228565.1| galactosyltransferase-related protein [Thermotoga maritima MSB8]
 gi|4981283|gb|AAD35838.1|AE001745_5 galactosyltransferase-related protein [Thermotoga maritima MSB8]
          Length = 1044

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 11/141 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
            L+   ++E+G G G  +  L    A  V  I+ D     +   IS  +    +E    D
Sbjct: 512 ILNKARILEVGTGTGAFSIELALREAD-VTGIDIDPTSIELAIRISKDYNVENVEFKVGD 570

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD--------TWPPFWESLTLLFQ 155
             K+  E F      I     +  +     +   +              P+  S      
Sbjct: 571 GFKLT-ESFKPQEFDIAFNMGVVEHFKDDDIIKMLKQMGEVAKFVVVGVPYSGSFVYKTA 629

Query: 156 KEVGERITAQKNSPHYGRLSV 176
           KE  +++ A +       L++
Sbjct: 630 KETAQKLGAWEYGFERDFLTL 650


>gi|26989453|ref|NP_744878.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas putida
           KT2440]
 gi|24984320|gb|AAN68342.1|AE016467_12 cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas putida
           KT2440]
          Length = 395

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 36/169 (21%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L++I +         ++EIG+G G+L     T    +V            L +  +Q+ +
Sbjct: 156 LERICQKLELSPDDHLLEIGSGWGSLAIHAATRYGCRVTT--------TTLSE--AQYSH 205

Query: 96  RLEIIQD-------DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
            LE ++          L+ D+         +  I               +     P ++ 
Sbjct: 206 TLERVKALGLGQRVQVLREDYRDLQGTFDKLVSIEM----------IEAVGHRYLPVYFR 255

Query: 149 SLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
               L + E    + A         +++      +A    D      FP
Sbjct: 256 QCASLLKPEGLMLLQA---------ITIRDQRYAQAQRSVDFIQRYIFP 295


>gi|254233053|ref|ZP_04926380.1| hypothetical protein TBCG_02905 [Mycobacterium tuberculosis C]
 gi|124602112|gb|EAY61122.1| hypothetical protein TBCG_02905 [Mycobacterium tuberculosis C]
          Length = 161

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
          I  +   L G+ V+++ AG G L    L+ GA  V+ +E DQ+   ++  
Sbjct: 8  IVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIAR 57


>gi|114561846|ref|YP_749359.1| methyltransferase small [Shewanella frigidimarina NCIMB 400]
 gi|122300753|sp|Q087P4|TRMN6_SHEFN RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|114333139|gb|ABI70521.1| methyltransferase small [Shewanella frigidimarina NCIMB 400]
          Length = 251

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHP--NRLE 98
           +       +++IGAG G L+ M          +I +E D       +    Q P    ++
Sbjct: 30  AELTQSSHILDIGAGSGLLSLMAAQRSPHHTSIIAVEIDNAAAKACQFNIKQSPWSETVQ 89

Query: 99  IIQDDALKVDFEKFFNISSPI-RIIANLPY 127
           +              N       II N PY
Sbjct: 90  LFHGAIQDFQQRHNNNDEPLFDHIICNPPY 119


>gi|325293086|ref|YP_004278950.1| L-isoaspartyl protein carboxyl methyltransferase [Agrobacterium sp.
           H13-3]
 gi|325060939|gb|ADY64630.1| L-isoaspartyl protein carboxyl methyltransferase [Agrobacterium sp.
           H13-3]
          Length = 217

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           KI        G  V+EIG G G +T ++      +V  +E+ +      ++       R 
Sbjct: 71  KILARLQLKPGQRVLEIGTGSGFMTAIIARR-VERVFSLERYKTLVQQAQNCLDDLSIRN 129

Query: 98  EIIQD 102
            +I+ 
Sbjct: 130 VVIRQ 134


>gi|321441995|gb|ADW85412.1| arg methyltransferase [Eterusia aedea]
          Length = 244

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
               G TV++IG G G L+      GA KVI +E         + I     NRL    DD
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEA--NRL----DD 71

Query: 104 ALKVDFEKFFNISSPIRIIA 123
            +++   K   +  P+  + 
Sbjct: 72  IIEIVKGKVEEVELPVEKVD 91


>gi|295115548|emb|CBL36395.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [butyrate-producing bacterium SM4/1]
          Length = 319

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQ 101
                 ++++G G G L    L LGAR+V   + D+     + +    +     R  ++Q
Sbjct: 170 VTPETRLLDVGTGSGILGITALKLGAREVFGTDLDENAIVAVGENLEANGIGEGRFTVVQ 229

Query: 102 DDA 104
            + 
Sbjct: 230 GNI 232


>gi|295092114|emb|CBK78221.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Clostridium cf. saccharolyticum K10]
          Length = 319

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQ 101
                 ++++G G G L    L LGAR+V   + D+     + +    +     R  ++Q
Sbjct: 170 VTPETRLLDVGTGSGILGITALKLGAREVFGTDLDENAIVAVGENLEANGIGEGRFTVVQ 229

Query: 102 DDA 104
            + 
Sbjct: 230 GNI 232


>gi|255075629|ref|XP_002501489.1| predicted protein [Micromonas sp. RCC299]
 gi|226516753|gb|ACO62747.1| predicted protein [Micromonas sp. RCC299]
          Length = 187

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +  +KIA  +    G  V++I  G    T  +       V  +E D        ++   
Sbjct: 25  EDTARKIAAVAPIRKGARVLDICTGL-AYTASMARERGGDVTTVELDPAM----TEMCRM 79

Query: 93  HPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANLPY 127
           +P+   +   D  ++     D        S  RI+ + P 
Sbjct: 80  NPHSAALFSGDIRQLYGNAADVVPTLPDDSFDRIVHDPPT 119


>gi|222110528|ref|YP_002552792.1| hypothetical protein Dtpsy_1327 [Acidovorax ebreus TPSY]
 gi|221729972|gb|ACM32792.1| hypothetical protein Dtpsy_1327 [Acidovorax ebreus TPSY]
          Length = 241

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L++I            +E+G G G  T  L T   R V+ I+ +     + +   + H  
Sbjct: 30  LRQIV------PTEATLEVGCGAGWSTLSLATN--RPVLAIDNNAHLIGLARSRLNTHGV 81

Query: 96  RLEIIQDD 103
             EIIQ D
Sbjct: 82  NAEIIQSD 89


>gi|254391031|ref|ZP_05006240.1| methyltransferase type 12 [Streptomyces clavuligerus ATCC 27064]
 gi|294816614|ref|ZP_06775256.1| Putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326445529|ref|ZP_08220263.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197704727|gb|EDY50539.1| methyltransferase type 12 [Streptomyces clavuligerus ATCC 27064]
 gi|294321429|gb|EFG03564.1| Putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 275

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G   G   +E+G G G++ + L    A  +V+V + D +  P         PN L +++ 
Sbjct: 54  GVQPGWRCLELGGGAGSIARWLAAHSAPGEVVVTDLDTRLLPR------GIPN-LTVLRH 106

Query: 103 DALKVDFEK 111
           D +  DF  
Sbjct: 107 DVVHDDFPA 115


>gi|193659891|ref|XP_001947856.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
          methyltransferase CG14683-like [Acyrthosiphon pisum]
          Length = 351

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
          ++  +   P K           +L++         G  +I++  G G  T+ +L      
Sbjct: 16 LVRQHNSRPHK---------PVLLEEAISYLSPKKGHNIIDMTFGAGGHTERILQENDTT 66

Query: 73 VI-VIEKDQQFFPILKDISSQHPNRL 97
          V+  +++D     + K +S ++PNR+
Sbjct: 67 VVYCLDRDPTACAMAKQLSERYPNRV 92


>gi|91203088|emb|CAJ72727.1| hypothetical protein kustd1982 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 208

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           QN   + ++  ++ E+        VI++G G   L   LL  G  ++  ++   +     
Sbjct: 28  QN---EPSVSLRLIENCQLEKNEPVIDVGGGASVLVDRLLEKGYTRLAALDISSKALDFA 84

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
           ++        +E  + D  +    + F++     +  
Sbjct: 85  RNRLGNKAQYVEWFETDITEFSSRRQFSLWHDRAVFH 121


>gi|13472006|ref|NP_103573.1| hypothetical protein mll2162 [Mesorhizobium loti MAFF303099]
 gi|14022751|dbj|BAB49359.1| mll2162 [Mesorhizobium loti MAFF303099]
          Length = 198

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEII 100
           S G   G+T +++  G G  T  L  + + +V  ++ D +     K    Q   + L+ I
Sbjct: 29  SLGVEPGMTALDLCCGDGYFTAPLAKIVSGRVYALDLDPEMIVAAKAEVKQLGVSVLKWI 88

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNI-GTRLLFNWISADTWPPFWESLT 151
             DA +V   +         +IAN  + +     L   ++    P    +L 
Sbjct: 89  VADASEV--AELIPEKIDFALIANTFHGVPDQPALVKAVARTLKPRGLFALV 138


>gi|322834711|ref|YP_004214738.1| ribosomal protein L11 methyltransferase [Rahnella sp. Y9602]
 gi|321169912|gb|ADW75611.1| ribosomal protein L11 methyltransferase [Rahnella sp. Y9602]
          Length = 294

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
            L   TVI+ G G G L    L LGA+ V+ I+ D Q     +D + ++
Sbjct: 156 DLTDKTVIDFGCGSGILAIAALKLGAKHVVGIDIDPQAIQASRDNAERN 204


>gi|319740483|gb|ADV60535.1| arg methyltransferase [Carthaea saturnioides]
          Length = 244

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|307293514|ref|ZP_07573358.1| methionine biosynthesis protein MetW [Sphingobium chlorophenolicum
           L-1]
 gi|306879665|gb|EFN10882.1| methionine biosynthesis protein MetW [Sphingobium chlorophenolicum
           L-1]
          Length = 195

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 31/157 (19%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  IA +     G  V+++G G G L   L          +E D       +++++    
Sbjct: 7   LALIART--VTPGARVLDVGCGDGALMAALRDAKQVDARGLEIDA------QNVAAAVAR 58

Query: 96  RLEIIQDDA---LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
            L ++Q DA   L    E  F+                  +L   +     P   + +  
Sbjct: 59  GLSVVQGDADTDLAYYPEASFDY----------------AILSQTLQTTRRP---DRVVE 99

Query: 153 LFQKEVGERITAQKNSPHY-GRLSVLTGWRTKATMMF 188
              +   +   +  N  H+ GRLS+  G R   T + 
Sbjct: 100 ELLRIGRQAFVSFPNFAHWRGRLSLFWGGRMPVTRLL 136


>gi|262301023|gb|ACY43104.1| arg methyltransferase [Armadillidium vulgare]
          Length = 243

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102
                  V+++G G G L+      GA KV  IE         K I + +  + +EII  
Sbjct: 19  HLFKNKIVLDVGCGTGILSMFAAKAGAAKVYGIEM-SNIVEQAKKIIAANNFDNIEIIHG 77


>gi|258511253|ref|YP_003184687.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477979|gb|ACV58298.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 316

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQ 92
           +L++  E+     G   ++   G G  T  LL        VI  ++D+      + +  Q
Sbjct: 9   LLEEAVEALRPQPGGVYVDATLGGGGHTARLLERSVPDGAVIAFDQDETAIAHAEPLKRQ 68

Query: 93  HPNRLEIIQDDA 104
           +P RL +++ + 
Sbjct: 69  YPGRLTLVKANF 80


>gi|195401274|ref|XP_002059239.1| GJ16285 [Drosophila virilis]
 gi|194156113|gb|EDW71297.1| GJ16285 [Drosophila virilis]
          Length = 293

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP----ILKDISSQHPN 95
             ++  L G  ++++G G G LT+ L  LGA  V  I+  ++        L + S +  +
Sbjct: 92  INTTKVLSGQRILDVGCGAGLLTEQLARLGAH-VTGIDLGEELIKAARVHLANCSPELSD 150

Query: 96  RLE 98
           R+E
Sbjct: 151 RVE 153


>gi|161527569|ref|YP_001581395.1| precorrin-6y C5,15-methyltransferase subunit CbiT [Nitrosopumilus
           maritimus SCM1]
 gi|160338870|gb|ABX11957.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Nitrosopumilus maritimus SCM1]
          Length = 196

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPILKDISSQHP-NR 96
              +    G TV +IG G G+++    L    + K+I I+ DQ    + K    +   + 
Sbjct: 32  ISKARLKSGQTVYDIGCGSGSISVEAALQIESSGKIIAIDYDQNAVDLTKKNLEKFELSN 91

Query: 97  LEIIQDDA 104
           + +I  +A
Sbjct: 92  VSVILGNA 99


>gi|68069603|ref|XP_676713.1| arginine n-methyltransferase [Plasmodium berghei strain ANKA]
 gi|56496533|emb|CAH99099.1| arginine n-methyltransferase, putative [Plasmodium berghei]
          Length = 337

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             I ++   +    V+++G G G L+      GA+ V  IEK
Sbjct: 101 DAIRKNEHLIKDKIVLDVGCGTGILSFFAAKHGAKHVYSIEK 142


>gi|330468038|ref|YP_004405781.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Verrucosispora maris AB-18-032]
 gi|328811009|gb|AEB45181.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Verrucosispora maris AB-18-032]
          Length = 526

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ----QFFPILKDISSQHPN 95
           AE++    G   +++G G G  T  L   G R V  ++  +    +     +++  Q   
Sbjct: 348 AEAAELTPG-RALDVGCGEGADTVWLAERGWR-VTGVDISKTALQRAAQHAREVGEQVAQ 405

Query: 96  RLEIIQDDALK 106
           R+E +  D L+
Sbjct: 406 RIEWVHTDLLR 416


>gi|311895017|dbj|BAJ27425.1| putative methyltransferase [Kitasatospora setae KM-6054]
          Length = 370

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              G+  G  V+EIG G G  T +     G   +  IE D                   +
Sbjct: 101 RQLGAEAGHRVLEIGTGTGYSTALGAHRLGDANLTSIEYDPVVGGAAATALKAAGFAPRL 160

Query: 100 IQDDALKVDFE 110
           I  D L+ D +
Sbjct: 161 IIGDGLRGDPQ 171


>gi|309389624|gb|ADO77504.1| Methyltransferase type 11 [Halanaerobium praevalens DSM 2228]
          Length = 247

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
              +++++G G G  T  L  +G + +I ++   +     K I+ +    +E I  DA  
Sbjct: 43  KNKSILDVGCGAGRTTFNLYEMGYKNIIGLDLTPEMISAAKTINKEKKTEIEFIVGDATD 102

Query: 107 VDFEK 111
           ++FE 
Sbjct: 103 LNFED 107


>gi|307707730|ref|ZP_07644209.1| adenine-specific methyltransferase [Streptococcus mitis NCTC 12261]
 gi|307616228|gb|EFN95422.1| adenine-specific methyltransferase [Streptococcus mitis NCTC 12261]
          Length = 317

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNR 96
           I E     + IT++E+G+G G L    LT  A+KV  + +E D     +   ++     +
Sbjct: 101 IVEELFKEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMADVIGLQ 160

Query: 97  LEIIQDDALK 106
              +Q DA++
Sbjct: 161 AGFVQGDAVR 170


>gi|300725760|ref|ZP_07059230.1| methyltransferase small domain protein [Prevotella bryantii B14]
 gi|299776933|gb|EFI73473.1| methyltransferase small domain protein [Prevotella bryantii B14]
          Length = 247

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDA 104
           G  +++IG G G L+ ML       ++  IE D+      KD   +S   +R+++     
Sbjct: 44  GNNILDIGTGTGVLSLMLAQRFPNAQIQAIEIDENAVLDAKDNFFASPFADRIKLEHIAF 103

Query: 105 LKVDFEKFFNISSPIRIIANLPY 127
                E    +     ++ N PY
Sbjct: 104 QDYIKEVKDTMPIYDSVVCNPPY 126


>gi|326202501|ref|ZP_08192370.1| Acyl transferase [Clostridium papyrosolvens DSM 2782]
 gi|325987619|gb|EGD48446.1| Acyl transferase [Clostridium papyrosolvens DSM 2782]
          Length = 4048

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 35   ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
            ++K I  S      + ++EIG G G  T  +L       +         P+L   +S+  
Sbjct: 1918 VVKSIVSSHAPGKKVKILEIGGGTGGSTAKILKEINGLDVEYTF-TDISPVLLKHASESF 1976

Query: 95   NRLEIIQDDALKVDFEKFFN 114
                 +    L ++ E +  
Sbjct: 1977 KEYTFVNYTQLDIEKEPYMQ 1996


>gi|290581321|ref|YP_003485713.1| putative methyltransferase [Streptococcus mutans NN2025]
 gi|254998220|dbj|BAH88821.1| putative methyltransferase [Streptococcus mutans NN2025]
          Length = 317

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+++   + D     + ++    +     + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSVASSLLGAKEIFAYDLDDVAVRVAQENIDLNAGTENIHVTAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|253733049|ref|ZP_04867214.1| HemK family methyltransferase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728957|gb|EES97686.1| HemK family methyltransferase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 278

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 107 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 166

Query: 104 ALKVDFEKFFNISSPIR-IIANLPY 127
           ALK       N    +  +I+N PY
Sbjct: 167 ALK----PLINEGIKLNGLISNPPY 187


>gi|126663015|ref|ZP_01734013.1| hypothetical protein FBBAL38_06675 [Flavobacteria bacterium BAL38]
 gi|126624673|gb|EAZ95363.1| hypothetical protein FBBAL38_06675 [Flavobacteria bacterium BAL38]
          Length = 234

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQ 101
             +   V++IGAG G L+ ML     A ++  IE D+  +    +     P  ++L    
Sbjct: 32  INNPYNVLDIGAGTGILSLMLAQRSNAEQIDAIEIDEDAYEQCVENFESSPWGDKLFCFH 91

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYN 128
               +   E          II+N P+ 
Sbjct: 92  AGLDEFVDEP---EDEYDLIISNPPFY 115


>gi|39936600|ref|NP_948876.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           CGA009]
 gi|42559427|sp|P60398|RSMH_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|39650456|emb|CAE28979.1| Bacterial methyltransferase [Rhodopseudomonas palustris CGA009]
          Length = 332

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G G  T+++L     +VI I++D        D+ ++   RL ++QD
Sbjct: 34  GAGGYTRLILETAGSRVIAIDRDPSAIAGGADLVTEAGGRLTLVQD 79


>gi|121613397|ref|YP_001000972.1| hypothetical protein CJJ81176_1314 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005879|ref|ZP_02271637.1| hypothetical protein Cjejjejuni_06890 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85067667|gb|ABC69279.1| unknown [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249668|gb|EAQ72627.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|107770382|gb|ABF83718.1| hypothetical protein [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 298

 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 28  NFLLDLNILKKIAES-SGSLDGITV----IEIGAGPGN-LTQMLLTLGARKVIVIEKDQQ 81
           NF+ D +I   I       +    +    +EIG G GN   Q L      +++ ++    
Sbjct: 107 NFIWDTHIA--IRRYFIDLMQNNNIFGKYLEIGPGHGNFFLQSLKFGQFSELLGVDISPT 164

Query: 82  FFPILKDISSQHPN----RLEIIQDDALKVDFEKFFN 114
              + K I S + +    + + I  D L+ DF + F+
Sbjct: 165 SCEMTKKIVSFNDHKAKQKCQFICMDFLEYDFNEQFD 201


>gi|319740481|gb|ADV60534.1| arg methyltransferase [Saturnia naessigi]
          Length = 244

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAVEC-SNIVDYARKIVEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|269941716|emb|CBI50123.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|329314802|gb|AEB89215.1| Modification methylase HemK family protein [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329723986|gb|EGG60510.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 277

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 106 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 165

Query: 104 ALKVDFEKFFNISSPIR-IIANLPY 127
           ALK       N    +  +I+N PY
Sbjct: 166 ALK----PLINEGIKLNGLISNPPY 186


>gi|262301063|gb|ACY43124.1| arg methyltransferase [Ischnura verticalis]
          Length = 246

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
               G  V++IG G G L+      GA KV  IE         K I   +   + +EI++
Sbjct: 19  HLFKGKVVLDIGCGTGILSMFAAKAGASKVYGIEC-SNIVEYAKKIVEANNLSDVVEIVK 77

Query: 102 DDALKVDFEKFFNISSPIRII 122
               KV+     +    + II
Sbjct: 78  G---KVEEVTLPDGVQKVDII 95


>gi|262199723|ref|YP_003270932.1| methyltransferase type 11 [Haliangium ochraceum DSM 14365]
 gi|262083070|gb|ACY19039.1| Methyltransferase type 11 [Haliangium ochraceum DSM 14365]
          Length = 610

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +  + G  V+E+G G G+  + L   GA +V+ +  D +   I +       + L    +
Sbjct: 25  ADLVAGKQVLEVGCGAGDGARFLAEHGAARVVAL--DSRADRIERARRKHEVSNLAFRHE 82

Query: 103 D--ALKVDFEKF 112
           D  AL++  + F
Sbjct: 83  DPAALELPDDSF 94


>gi|269127965|ref|YP_003301335.1| protein-L-isoaspartate(D-aspartate)O-methyltransferase
           [Thermomonospora curvata DSM 43183]
 gi|268312923|gb|ACY99297.1| protein-L-isoaspartate(D-aspartate)O-methyltrans ferase
           [Thermomonospora curvata DSM 43183]
          Length = 384

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            +++ ++    G+  G+ V+EIG G G N   +   LGA  V  +E D Q     +   +
Sbjct: 92  PSLVLRMLHELGAEPGMRVLEIGTGTGYNAALLAARLGAGGVTSVEVDPQVAQRARRALA 151

Query: 92  QHPNRLEIIQDD 103
           +    +++I  D
Sbjct: 152 EAGCPVDVITAD 163


>gi|283796177|ref|ZP_06345330.1| ribosomal protein L11 methyltransferase [Clostridium sp. M62/1]
 gi|291076396|gb|EFE13760.1| ribosomal protein L11 methyltransferase [Clostridium sp. M62/1]
          Length = 319

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQ 101
                 ++++G G G L    L LGAR+V   + D+     + +    +     R  ++Q
Sbjct: 170 VTPETRLLDVGTGSGILGITALKLGAREVFGTDLDENAIVAVGENLEANGIGEGRFTVVQ 229

Query: 102 DDA 104
            + 
Sbjct: 230 GNI 232


>gi|73662488|ref|YP_301269.1| ribosomal protein L11 methyltransferase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|82581520|sp|Q49Y20|PRMA_STAS1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|72495003|dbj|BAE18324.1| putative ribosomal protein L11 methylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 312

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI--I 100
           +      +VI++G G G L+     LG +++  ++ D+    + K+   ++     I  +
Sbjct: 169 AYVKSSDSVIDVGTGSGILSIAAHLLGVKRIKALDVDEMAVRVAKENFQKNNCEYAIEAV 228

Query: 101 QDDALKVDFEKF 112
             + LK + EKF
Sbjct: 229 PGNLLKEETEKF 240


>gi|13366138|dbj|BAB39463.1| BioC [Kurthia sp. 538-KA26]
          Length = 276

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            ++EIG G G LT++L+       +  ++       + K I+ +  +R+  +  D  ++ 
Sbjct: 46  NILEIGCGTGYLTRLLVNTFPNASITAVDLAPGMVEVAKGITME--DRVTFLCADIEEMT 103

Query: 109 FEKFFNI---SSPIRIIANLPYNIGTRLLF-----NWISADTWPPFWESLTLLFQ---KE 157
             + +++   ++  + + NLP  I           N I +      ++ L + ++   ++
Sbjct: 104 LNENYDLIISNATFQWLNNLPGTIEQLFTRLTPEGNLIFSTFGIKTFQELHMSYEHAKEK 163

Query: 158 VGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
           +   I +      Y  L  L+    +A     I     FP
Sbjct: 164 LQLSIDSSPGQLFY-ALEELSQICEEA-----IPFSSAFP 197


>gi|281342909|gb|EFB18493.1| hypothetical protein PANDA_016706 [Ailuropoda melanoleuca]
          Length = 437

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 85/274 (31%), Gaps = 48/274 (17%)

Query: 19  IIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           + PKK      +G        ++KK    S       V++IG+G G+L++ +       V
Sbjct: 93  VRPKKQHEIRRLG-------ELVKK---LSDLTGCTQVVDIGSGQGHLSRFMSLGLGLMV 142

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             IE DQ+     + +  +    LE                     +++   P +     
Sbjct: 143 KSIEGDQRLVERAQRLDQELLQALE--------------KEEKRHPQVVHAGPRH-SPHH 187

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV-LTGWRTKATMMFDISP 192
           +  W+                 +     +         G LSV L    ++  ++   S 
Sbjct: 188 VVRWVEPTALCEELLLPLETLPRSGARLLL--TGLHACGDLSVTLLRHFSRPEVVALASV 245

Query: 193 HVFF-----PSPKVTSTVIHFIPHLNPI--------PCCLESLKKITQEAFGKRRKTLRQ 239
              +     P     S  +  +P                 E  +++ +     R    R 
Sbjct: 246 GCCYMKLSDPGGYPLSQWVAGLPSCELPYRLREGACHALEEYAERLQKAGPALRTHCYRA 305

Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCR 271
           +L+ +  G    L + G++   R   L IE++ +
Sbjct: 306 ALETVIRGARPELRRPGVQGIPRVHELKIEEYVQ 339


>gi|167384269|ref|XP_001736879.1| protein arginine N-methyltransferase 1 [Entamoeba dispar SAW760]
 gi|165900587|gb|EDR26883.1| protein arginine N-methyltransferase 1, putative [Entamoeba
          dispar SAW760]
          Length = 332

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
          + ++ G  V+++G G G L+      GA+ V  IE+
Sbjct: 47 ACNIKGKIVLDVGCGLGILSLFAARAGAKHVYAIER 82


>gi|168047907|ref|XP_001776410.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672254|gb|EDQ58794.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 346

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK--DISSQHP 94
           +++ +  G   G  V+++G G G   + + +     V  I  +       +  +  +   
Sbjct: 101 ERVVDLLGVKPGQKVLDVGCGVGGPMRAIASYSQSHVTGITINDYQVARARSHNKKAGLD 160

Query: 95  NRLEIIQDDALKVDFEK-FFNISSPIRIIANLP 126
              E++  + L++ FE   F+ +  I    + P
Sbjct: 161 EICEVVCGNFLQMPFEDSSFDGAYSIEATCHAP 193


>gi|158337797|ref|YP_001518973.1| UbiE/COQ5 family methlytransferase [Acaryochloris marina MBIC11017]
 gi|158308038|gb|ABW29655.1| methyltransferase, UbiE/COQ5 family, putative [Acaryochloris marina
           MBIC11017]
          Length = 232

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP-N 95
           I  ++   D  T++++G G G  T   L      V  + +  D++     +   +  P N
Sbjct: 62  IYSAAQVQDHQTILDVGCGVGG-TVASLNERFTNVSLLGLNLDERQLAYAQQTVTARPEN 120

Query: 96  RLEIIQDDALKVDFEK 111
            +E +Q DA  + F  
Sbjct: 121 TIEFVQGDACALPFAD 136


>gi|560526|gb|AAA50947.1| u0002d [Mycobacterium tuberculosis]
          Length = 215

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           I  +   L G+ V+++ AG G L    L+ GA  V+ +E DQ+   ++  
Sbjct: 62  IVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIAR 111


>gi|87160068|ref|YP_494717.1| HemK family modification methylase [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88196021|ref|YP_500834.1| HemK family modification methylase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|87126042|gb|ABD20556.1| modification methylase, HemK family [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203579|gb|ABD31389.1| modification methylase, HemK family, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
          Length = 250

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 79  LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 138

Query: 104 ALKVDFEKFFNISSPIR-IIANLPY 127
           ALK       N    +  +I+N PY
Sbjct: 139 ALK----PLINEGIKLNGLISNPPY 159


>gi|57652139|ref|YP_186924.1| HemK family modification methylase [Staphylococcus aureus subsp.
           aureus COL]
 gi|151222233|ref|YP_001333055.1| modification methylase HemK family protein [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161510322|ref|YP_001575981.1| HemK family methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141636|ref|ZP_03566129.1| HemK family methyltransferase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258453173|ref|ZP_05701164.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A5948]
 gi|262049284|ref|ZP_06022159.1| hypothetical protein SAD30_0495 [Staphylococcus aureus D30]
 gi|262052619|ref|ZP_06024813.1| hypothetical protein SA930_2016 [Staphylococcus aureus 930918-3]
 gi|282923105|ref|ZP_06330790.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A9765]
 gi|284025151|ref|ZP_06379549.1| HemK family methyltransferase [Staphylococcus aureus subsp. aureus
           132]
 gi|294850087|ref|ZP_06790824.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           A9754]
 gi|304379298|ref|ZP_07362037.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|57286325|gb|AAW38419.1| modification methylase, HemK family [Staphylococcus aureus subsp.
           aureus COL]
 gi|150375033|dbj|BAF68293.1| modification methylase HemK family protein [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160369131|gb|ABX30102.1| HemK family methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859119|gb|EEV81976.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A5948]
 gi|259159489|gb|EEW44539.1| hypothetical protein SA930_2016 [Staphylococcus aureus 930918-3]
 gi|259162649|gb|EEW47216.1| hypothetical protein SAD30_0495 [Staphylococcus aureus D30]
 gi|282593296|gb|EFB98293.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A9765]
 gi|294823035|gb|EFG39467.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           A9754]
 gi|302751998|gb|ADL66175.1| modification methylase HemK family protein [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304342157|gb|EFM08057.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315196949|gb|EFU27291.1| HemK family methyltransferase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140711|gb|EFW32563.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143687|gb|EFW35464.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus MRSA177]
          Length = 278

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 107 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 166

Query: 104 ALKVDFEKFFNISSPIR-IIANLPY 127
           ALK       N    +  +I+N PY
Sbjct: 167 ALK----PLINEGIKLNGLISNPPY 187


>gi|89071135|ref|ZP_01158333.1| Cfa, cyclopropane-fatty-acyl-phospholipid synthase [Oceanicola
           granulosus HTCC2516]
 gi|89043320|gb|EAR49543.1| Cfa, cyclopropane-fatty-acyl-phospholipid synthase [Oceanicola
           granulosus HTCC2516]
          Length = 399

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHP 94
           + IA       G  V++IG G G +   L      +V+ +   ++   I ++    +Q  
Sbjct: 164 RHIARKLLIEPGDRVLDIGCGWGGMALTLARDFGARVVGVTLSEEQHRIARERVAQAQLS 223

Query: 95  NRLEIIQDDALKVDFE 110
           +R++I   D  +V+  
Sbjct: 224 DRIDIRLQDYREVEGP 239


>gi|148260479|ref|YP_001234606.1| putative methyltransferase [Acidiphilium cryptum JF-5]
 gi|146402160|gb|ABQ30687.1| putative methyltransferase [Acidiphilium cryptum JF-5]
          Length = 185

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEI 99
           + G++ G  V++  AG G L    L+ GA     IE+D+    +L+   +  +  +R  I
Sbjct: 45  AEGAVGGRMVLDAFAGSGALGLEALSRGAAGATFIEQDRAALAVLRRNVAACRAEDRSRI 104

Query: 100 IQDDAL 105
           +  DAL
Sbjct: 105 VAADAL 110


>gi|113461439|ref|YP_719508.1| SAM-dependent methyltransferase [Haemophilus somnus 129PT]
 gi|123031428|sp|Q0I4T7|TRMN6_HAES1 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|112823482|gb|ABI25571.1| conserved hypothetical protein [Haemophilus somnus 129PT]
          Length = 236

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP--NRLE 98
           +      T++++G G G +  ML         +  +E D Q +   KD   Q P  N+++
Sbjct: 34  ANINQANTLLDLGTGTGLIALMLAQRSPEHCHISAVELDPQAYLQAKDNIQQSPWANKIK 93

Query: 99  IIQDDALKV--DFEKFFNISSPIRIIANLPY 127
           I Q D +    D E  F++     I AN PY
Sbjct: 94  IFQQDIIVFAQDCEHKFDV-----ITANPPY 119


>gi|302341749|ref|YP_003806278.1| methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
 gi|301638362|gb|ADK83684.1| Methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
          Length = 201

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGAR-KVIVIEKDQQFFPILKDISSQH 93
          + ++ +++    G+ V+E G G G L+Q+L   +G   +V+ ++         +  +   
Sbjct: 30 IARLRQAAAIAPGMAVLEPGCGAGRLSQLLGQWVGPTGRVLAMDISPAMVAACQRRTQNL 89

Query: 94 P 94
          P
Sbjct: 90 P 90


>gi|294083999|ref|YP_003550756.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663571|gb|ADE38672.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 209

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L++  +L ++ ++        V+ +GAG G  T  ++   A  VI IE   Q     ++ 
Sbjct: 51  LMEPMVLSRLTQALEIRSDDNVLVVGAGSGYGT-AIMAQIAGSVIAIETRTQLVDKAQET 109

Query: 90  SS 91
            +
Sbjct: 110 LA 111


>gi|253731045|ref|ZP_04865210.1| HemK family methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725233|gb|EES93962.1| HemK family methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 278

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 107 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 166

Query: 104 ALKVDFEKFFNISSPIR-IIANLPY 127
           ALK       N    +  +I+N PY
Sbjct: 167 ALK----PLINEGIKLNGLISNPPY 187


>gi|56420117|ref|YP_147435.1| hypothetical protein GK1582 [Geobacillus kaustophilus HTA426]
 gi|56379959|dbj|BAD75867.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 232

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 9/132 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K+I          +V+++G G G     +       V  I+         K   +   
Sbjct: 23  LTKQILRKLKIDRSTSVLDVGCGTGQTAAYIAEQYGANVTAIDIHPTMIAKAKQRFASKA 82

Query: 95  NRLEIIQD--DALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
             + + +   +AL      F   +S  +    +LP  +    +   +  D      E+  
Sbjct: 83  VSVRLHRASVEALPFPAGTFDLALSESVLAFVSLPNALAE--IRRVLKNDGLFVGIEACH 140

Query: 152 LLF----QKEVG 159
                  QK++ 
Sbjct: 141 ERLTAAEQKQIA 152


>gi|42524959|ref|NP_970339.1| spermidine synthase [Bdellovibrio bacteriovorus HD100]
 gi|39577170|emb|CAE80993.1| probable spermidine synthase [Bdellovibrio bacteriovorus HD100]
          Length = 428

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF----PILKDISSQHPN-RLEIIQDDA 104
            V+ IG G G   + L       V ++E D+         L  I+ +  N +L +I  D 
Sbjct: 220 NVLVIGGGDGGTIRELFKYNVDNVTMVEIDEAVVRASKEHLPKIACEFNNPKLNLIIGDG 279

Query: 105 LKVDFEKFFNISSPIRIIANLP 126
           ++   +   N    I +  + P
Sbjct: 280 IQFVKDAPANSYDVIIVDGSDP 301


>gi|19552546|ref|NP_600548.1| N6-adenine-specific methylase [Corynebacterium glutamicum ATCC
           13032]
 gi|62390210|ref|YP_225612.1| N6-adenine-specific methylase [Corynebacterium glutamicum ATCC
           13032]
 gi|145295469|ref|YP_001138290.1| N6-adenine-specific methylase [Corynebacterium glutamicum R]
 gi|21324096|dbj|BAB98721.1| N6-adenine-specific methylase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325546|emb|CAF20026.1| N6-adenine-specific methylase [Corynebacterium glutamicum ATCC
           13032]
 gi|140845389|dbj|BAF54388.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 194

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDA 104
           +G  V++I AG G L     + GA +V+++E + +   +++      +HP R+ + +  A
Sbjct: 45  EGQRVLDIFAGSGALGLEAASRGADEVVLVESNPKAVEVIRRNVDVVKHP-RVTVAEMKA 103

Query: 105 ---LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
              L    +KFF       ++A+ PY +    +   ++A T P   +   ++ ++ V   
Sbjct: 104 STYLASAPDKFF-----TMVLADPPYELADDAVTEMLTALT-PKLLDGAAVVVERHVDSP 157

Query: 162 ITAQKNS 168
            TA    
Sbjct: 158 ETAWPAW 164


>gi|116622132|ref|YP_824288.1| type 12 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225294|gb|ABJ84003.1| Methyltransferase type 12 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 247

 Score = 36.3 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 12/113 (10%)

Query: 28  NFLLD------LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           +FL D       N    I      L G TV++IG   G  +  +   GA +V+ ++ D  
Sbjct: 41  HFLGDYPACKWRNFAHAI---PRDLSGKTVLDIGCNAGFYSLEMKRRGAERVVAVDSDPV 97

Query: 82  FFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           +    +  +      +E  + D  +VD          + +   + Y++   LL
Sbjct: 98  YLAQARFAAEVRGADIEFRELDVYRVDS---LREKFDLVLFMGVLYHLRHPLL 147


>gi|331005455|ref|ZP_08328834.1| hypothetical protein IMCC1989_1963 [gamma proteobacterium IMCC1989]
 gi|330420731|gb|EGG95018.1| hypothetical protein IMCC1989_1963 [gamma proteobacterium IMCC1989]
          Length = 281

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 28  NFLLDLNILK-----KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQ 80
           ++L D + LK      + +         V+EIG G GN T ++         +  I+ D 
Sbjct: 14  HWLDDHHALKYSMRASLIDQLRFSTNEEVLEIGCGAGNWTFLISDYIDHEGHITAIDIDS 73

Query: 81  QFFPIL---KDISSQHPNRLE------IIQDDALKVDFEKFFN 114
           +   I    +++ ++     E       + +D  + D    FN
Sbjct: 74  ESISIANNRQNLLAKKNITFEESEINHFLNEDNRQFDTIILFN 116


>gi|324328216|gb|ADY23476.1| ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 312

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G T+I++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVE 212


>gi|319740453|gb|ADV60520.1| arg methyltransferase [Apatelodes torrefacta]
          Length = 244

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANKLQDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|302547878|ref|ZP_07300220.1| LigA protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302465496|gb|EFL28589.1| LigA protein [Streptomyces himastatinicus ATCC 53653]
          Length = 760

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI---LKDISSQHPNRLEIIQDD 103
            V+ IGAG GN   + L  GAR+V  +E D +   I   L         R+ +  +D
Sbjct: 295 RVLVIGAGNGNDVALALAHGARRVDAVEIDPRLQEIGASLHPARPYDDPRVHVHIND 351


>gi|294618341|ref|ZP_06697922.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1679]
 gi|291595435|gb|EFF26747.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1679]
          Length = 210

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              D   ++++G G G +   L     R V +++ +++       ++  +  R +I   D
Sbjct: 66  ELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVS----LAQGNAKRNQIEHVD 121

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP-PFWESLTLLFQKEVGERI 162
             + +  +  +  +   I++N P   G +++   ++          +LT++ QK+ G   
Sbjct: 122 IHQSNIYEAVHEETYAAIVSNPPIRAGKKVVHEILTGAYHRLKKGGTLTIVIQKKQGAPS 181

Query: 163 TAQKNSPHYG 172
             +K    +G
Sbjct: 182 AQKKMEETFG 191


>gi|271500558|ref|YP_003333583.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Dickeya dadantii Ech586]
 gi|270344113|gb|ACZ76878.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Dickeya dadantii Ech586]
          Length = 282

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 41  ESSGSLDG--ITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRL 97
           ++   L     +V+++G G G +   +       +V+ I++          ++SQ+  RL
Sbjct: 101 QALAVLPDGASSVLDLGTGTGAIALAIAHERPDCQVVGIDRQPDAVA----LASQNARRL 156

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
            I     L  D+           I++N PY
Sbjct: 157 GIHNARFLPGDWFSPLAGQRFAVIVSNPPY 186


>gi|281411985|ref|YP_003346064.1| glycosyl transferase family 2 [Thermotoga naphthophila RKU-10]
 gi|281373088|gb|ADA66650.1| glycosyl transferase family 2 [Thermotoga naphthophila RKU-10]
          Length = 1044

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 11/141 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
            L+   ++E+G G G  +  L    A  V  I+ D     +   IS  +    +E    D
Sbjct: 512 ILNKARILEVGTGTGAFSIELALREAD-VTGIDIDPTSIELAIRISKDYNVENVEFKVGD 570

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD--------TWPPFWESLTLLFQ 155
             K+  E F      I     +  +     +   +              P+  S      
Sbjct: 571 GFKLT-ESFKPQEFDIAFNMGVVEHFKDDDIIKMLKQMGEVAKFVVVGVPYSGSFVYKTA 629

Query: 156 KEVGERITAQKNSPHYGRLSV 176
           KE  +++ A +       L++
Sbjct: 630 KETAQKLGAWEYGFERDFLTL 650


>gi|239615572|gb|EEQ92559.1| predicted protein [Ajellomyces dermatitidis ER-3]
          Length = 114

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRR---KTLRQSLKRLGGENLLHQAGIETNL 259
           S V+                KK    AF  R    KT   +LKRL  + L  + GIE   
Sbjct: 8   SAVLRITKARERCHRLEREKKK----AFKHRETDCKTCYNALKRLCKKELTEKEGIEALF 63

Query: 260 R 260
           R
Sbjct: 64  R 64


>gi|271962604|ref|YP_003336800.1| pristinamycin I synthase 3 [Streptosporangium roseum DSM 43021]
 gi|270505779|gb|ACZ84057.1| putative pristinamycin I synthase 3 [Streptosporangium roseum DSM
           43021]
          Length = 243

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +      G +++EIG+G G+  +  L    R V+  + D      L+   +    R EI 
Sbjct: 35  DMVAPHVGRSMLEIGSGLGHFAEAFLPRLDRLVVS-DFDPYCVDRLRKRFA---GRDEI- 89

Query: 101 QDDALKVDFEKFFNISSPIRIIANLP 126
             D L+        I   +  +  + 
Sbjct: 90  --DVLQFGLPTDIPIGEKVDTVVMMN 113


>gi|228923065|ref|ZP_04086357.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836563|gb|EEM81912.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 312

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G T+I++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVE 212


>gi|228954598|ref|ZP_04116622.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805044|gb|EEM51639.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 312

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G T+I++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVE 212


>gi|229031961|ref|ZP_04187947.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH1271]
 gi|228729351|gb|EEL80342.1| Ribosomal protein L11 methyltransferase [Bacillus cereus AH1271]
          Length = 312

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G T+I++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVE 212


>gi|228910149|ref|ZP_04073968.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis IBL
           200]
 gi|228941479|ref|ZP_04104029.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974409|ref|ZP_04134977.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981004|ref|ZP_04141306.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|229071817|ref|ZP_04205031.1| Ribosomal protein L11 methyltransferase [Bacillus cereus F65185]
 gi|229081574|ref|ZP_04214071.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock4-2]
 gi|229180589|ref|ZP_04307931.1| Ribosomal protein L11 methyltransferase [Bacillus cereus 172560W]
 gi|228603013|gb|EEK60492.1| Ribosomal protein L11 methyltransferase [Bacillus cereus 172560W]
 gi|228701730|gb|EEL54219.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock4-2]
 gi|228711296|gb|EEL63257.1| Ribosomal protein L11 methyltransferase [Bacillus cereus F65185]
 gi|228778664|gb|EEM26929.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228785245|gb|EEM33256.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818129|gb|EEM64204.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228849432|gb|EEM94267.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis IBL
           200]
 gi|326942095|gb|AEA17991.1| ribosomal protein L11 [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 312

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G T+I++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVE 212


>gi|229192523|ref|ZP_04319485.1| Ribosomal protein L11 methyltransferase [Bacillus cereus ATCC
           10876]
 gi|228590947|gb|EEK48804.1| Ribosomal protein L11 methyltransferase [Bacillus cereus ATCC
           10876]
          Length = 312

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G T+I++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVE 212


>gi|213965641|ref|ZP_03393835.1| precorrin-6Y C [Corynebacterium amycolatum SK46]
 gi|213951800|gb|EEB63188.1| precorrin-6Y C [Corynebacterium amycolatum SK46]
          Length = 408

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             +     G  + ++G G G++       G R  I  E+D      +    +     + +
Sbjct: 245 VAALDPRPGALLWDVGGGTGSIGIEWARHGGRAEIF-ERDDVRAERIAKNVATLSGNVTV 303

Query: 100 IQDDA 104
               A
Sbjct: 304 HHGAA 308


>gi|206969854|ref|ZP_03230808.1| ribosomal protein L11 methyltransferase [Bacillus cereus AH1134]
 gi|206735542|gb|EDZ52710.1| ribosomal protein L11 methyltransferase [Bacillus cereus AH1134]
          Length = 312

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G T+I++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVE 212


>gi|196038486|ref|ZP_03105795.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196030894|gb|EDX69492.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
          Length = 239

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     ++     KV  +EK++      KD  S   
Sbjct: 25  LTKQLLAQLPFRHGANVLEIGCGTGKTAAYMVRNFGYKVTAVEKNEIMIQKAKDRWSSEG 84

Query: 95  NRLEIIQDDA 104
             +++I+  A
Sbjct: 85  IDIQLIEGKA 94


>gi|167757784|ref|ZP_02429911.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704]
 gi|167769822|ref|ZP_02441875.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM
           17241]
 gi|317500622|ref|ZP_07958841.1| SAM independent family methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|323487600|ref|ZP_08092890.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14163]
 gi|167664666|gb|EDS08796.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704]
 gi|167668183|gb|EDS12313.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM
           17241]
 gi|316897940|gb|EFV19992.1| SAM independent family methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|323399099|gb|EGA91507.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14163]
          Length = 255

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  ++  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SIVAFDYSKKMIELAKRRQSQYAKQI 115

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 116 EFCVADA 122


>gi|196034156|ref|ZP_03101566.1| conserved hypothetical protein [Bacillus cereus W]
 gi|218904706|ref|YP_002452540.1| hypothetical protein BCAH820_3590 [Bacillus cereus AH820]
 gi|228928631|ref|ZP_04091667.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229123096|ref|ZP_04252303.1| Methyltransferase type 11 [Bacillus cereus 95/8201]
 gi|195993230|gb|EDX57188.1| conserved hypothetical protein [Bacillus cereus W]
 gi|218539396|gb|ACK91794.1| conserved hypothetical protein [Bacillus cereus AH820]
 gi|228660390|gb|EEL16023.1| Methyltransferase type 11 [Bacillus cereus 95/8201]
 gi|228830950|gb|EEM76551.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 239

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     ++     KV  +EK++      KD  S   
Sbjct: 25  LTKQLLAQLPFRHGANVLEIGCGTGKTAAYMVRNFGYKVTAVEKNEIMIQKAKDRWSSEG 84

Query: 95  NRLEIIQDDA 104
             +++I+  A
Sbjct: 85  IDIQLIEGKA 94


>gi|153812680|ref|ZP_01965348.1| hypothetical protein RUMOBE_03087 [Ruminococcus obeum ATCC 29174]
 gi|149831196|gb|EDM86285.1| hypothetical protein RUMOBE_03087 [Ruminococcus obeum ATCC 29174]
          Length = 622

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
          VI +GAG G +T      G   V   E+D++   + K   S   N L+
Sbjct: 5  VIILGAGIGAMTMGFENAGCSVVAAYERDRRAIELYKKNISGEINELD 52


>gi|118478826|ref|YP_895977.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|118418051|gb|ABK86470.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
          Length = 239

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     ++     KV  +EK++      KD  S   
Sbjct: 25  LTKQLLAQLPFRHGANVLEIGCGTGKTAAYMVRNFGYKVTAVEKNEIMIQKAKDRWSSEG 84

Query: 95  NRLEIIQDDA 104
             +++I+  A
Sbjct: 85  IDIQLIEGKA 94


>gi|52842395|ref|YP_096194.1| hypothetical protein lpg2182 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629506|gb|AAU28247.1| BG:DS09218.5 gene product [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 259

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 49/139 (35%), Gaps = 9/139 (6%)

Query: 50  TVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            +++IG G G+ T +L   +   +++ I+  +Q         ++     E+      +  
Sbjct: 39  NILDIGCGDGHYTSLLAGKVKHGQILGIDSSEQMIMHANQQWARTGLSFEVHN--IEEFH 96

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL---TLLFQ--KEVGERIT 163
             + F++      +     +I    +F+ +  +       S      + Q  KE+ ++  
Sbjct: 97  QPQSFDLVLSFWCLHWTNIHISFPNIFHLLKREGKLYAVMSSFSDHSILQTWKELAKQNL 156

Query: 164 AQKNSPHYGRLSVLTGWRT 182
            +  +  Y    +   +  
Sbjct: 157 YRDLTKQYISP-INEQYFY 174


>gi|78065494|ref|YP_368263.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia sp. 383]
 gi|91208031|sp|Q39IU7|TRMB_BURS3 RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|77966239|gb|ABB07619.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia sp. 383]
          Length = 255

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 46  LDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
                ++EIG G G  T  +         + +E  +     +LK I  Q  + + IIQ D
Sbjct: 79  RSAPRILEIGFGMGASTAEIAANRPGDDFLGVEVHEPGVGALLKLIGEQDLSNIRIIQHD 138

Query: 104 ALKVDFEKFFNIS-SPIRIIANLPYN---------IGTRLLFNWISADTWPPFWESLT 151
           A++V        S   + I    P++         I   L+ + +S      +    T
Sbjct: 139 AVEVLEHMLAPESLDGVHIFFPDPWHKARHHKRRLIQPPLVAHLVSRLKPGAYIHCAT 196


>gi|86137691|ref|ZP_01056268.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193]
 gi|85826026|gb|EAQ46224.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193]
          Length = 330

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G  T+ LL  GA +VI +++D   F + +  ++ + +RL + +    K+D
Sbjct: 37  GAGGYTRGLLEAGAEQVIGVDRDPLAFELAQPWAADYGDRLVLQEGVFSKMD 88


>gi|30264383|ref|NP_846760.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Ames]
 gi|47529834|ref|YP_021183.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49187207|ref|YP_030459.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Sterne]
 gi|49481320|ref|YP_038367.1| ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141191|ref|YP_085638.1| ribosomal protein L11 methyltransferase [Bacillus cereus E33L]
 gi|65321685|ref|ZP_00394644.1| COG2264: Ribosomal protein L11 methylase [Bacillus anthracis str.
           A2012]
 gi|118479480|ref|YP_896631.1| ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           str. Al Hakam]
 gi|165872039|ref|ZP_02216679.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0488]
 gi|167634595|ref|ZP_02392915.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0442]
 gi|167638656|ref|ZP_02396932.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0193]
 gi|170687478|ref|ZP_02878695.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0465]
 gi|170707375|ref|ZP_02897829.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0389]
 gi|177653293|ref|ZP_02935545.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0174]
 gi|190567039|ref|ZP_03019955.1| ribosomal protein L11 methyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034488|ref|ZP_03101897.1| ribosomal protein L11 methyltransferase [Bacillus cereus W]
 gi|196039312|ref|ZP_03106618.1| ribosomal protein L11 methyltransferase [Bacillus cereus
           NVH0597-99]
 gi|218905449|ref|YP_002453283.1| ribosomal protein L11 methyltransferase [Bacillus cereus AH820]
 gi|225866293|ref|YP_002751671.1| ribosomal protein L11 methyltransferase [Bacillus cereus 03BB102]
 gi|227817088|ref|YP_002817097.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228916944|ref|ZP_04080505.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929356|ref|ZP_04092380.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935632|ref|ZP_04098446.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948025|ref|ZP_04110310.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093382|ref|ZP_04224487.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock3-42]
 gi|229123851|ref|ZP_04253044.1| Ribosomal protein L11 methyltransferase [Bacillus cereus 95/8201]
 gi|229186552|ref|ZP_04313713.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BGSC 6E1]
 gi|229604151|ref|YP_002868601.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0248]
 gi|254684069|ref|ZP_05147929.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721903|ref|ZP_05183692.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A1055]
 gi|254736417|ref|ZP_05194123.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741455|ref|ZP_05199142.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Kruger B]
 gi|254750893|ref|ZP_05202932.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Vollum]
 gi|254757779|ref|ZP_05209806.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Australia 94]
 gi|300118698|ref|ZP_07056426.1| ribosomal protein L11 methyltransferase [Bacillus cereus SJ1]
 gi|301055804|ref|YP_003794015.1| ribosomal protein L11 methyltransferase [Bacillus anthracis CI]
 gi|38605213|sp|Q81LS4|PRMA_BACAN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|60390326|sp|Q634M9|PRMA_BACCZ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|60390445|sp|Q6HDK9|PRMA_BACHK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223395|sp|A0RIT1|PRMA_BACAH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710051|sp|B7JN37|PRMA_BACC0 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254782826|sp|C3P8L8|PRMA_BACAA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254782827|sp|C3L5R5|PRMA_BACAC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254782828|sp|C1ESK6|PRMA_BACC3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|30259041|gb|AAP28246.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Ames]
 gi|47504982|gb|AAT33658.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49181134|gb|AAT56510.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           Sterne]
 gi|49332876|gb|AAT63522.1| ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51974660|gb|AAU16210.1| ribosomal protein L11 methyltransferase [Bacillus cereus E33L]
 gi|118418705|gb|ABK87124.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712170|gb|EDR17707.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0488]
 gi|167513504|gb|EDR88874.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0193]
 gi|167530047|gb|EDR92782.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0442]
 gi|170127619|gb|EDS96492.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0389]
 gi|170668673|gb|EDT19419.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0465]
 gi|172081575|gb|EDT66647.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0174]
 gi|190562030|gb|EDV15999.1| ribosomal protein L11 methyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993030|gb|EDX56989.1| ribosomal protein L11 methyltransferase [Bacillus cereus W]
 gi|196029939|gb|EDX68540.1| ribosomal protein L11 methyltransferase [Bacillus cereus
           NVH0597-99]
 gi|218537172|gb|ACK89570.1| ribosomal protein L11 methyltransferase [Bacillus cereus AH820]
 gi|225789933|gb|ACO30150.1| ribosomal protein L11 methyltransferase [Bacillus cereus 03BB102]
 gi|227007242|gb|ACP16985.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228596811|gb|EEK54470.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228659565|gb|EEL15212.1| Ribosomal protein L11 methyltransferase [Bacillus cereus 95/8201]
 gi|228689976|gb|EEL43779.1| Ribosomal protein L11 methyltransferase [Bacillus cereus Rock3-42]
 gi|228811611|gb|EEM57947.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823992|gb|EEM69810.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830307|gb|EEM75920.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842665|gb|EEM87752.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229268559|gb|ACQ50196.1| ribosomal protein L11 methyltransferase [Bacillus anthracis str.
           A0248]
 gi|298723947|gb|EFI64661.1| ribosomal protein L11 methyltransferase [Bacillus cereus SJ1]
 gi|300377973|gb|ADK06877.1| ribosomal protein L11 methyltransferase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 312

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G T+I++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVE 212


>gi|330508817|ref|YP_004385245.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328929625|gb|AEB69427.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 198

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 34  NILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           ++  +I   +   + + TV ++G G G L      +GAR V  +E D+      +  +  
Sbjct: 31  SVAAEILFLAALRNDLGTVCDLGCGTGVLAIGAALMGARAV-GVEIDKDALATARKNAEN 89

Query: 93  HPNRLEIIQDDALKVDFEKF 112
               ++ I+ D  K++ E  
Sbjct: 90  LGVHVDFIRADVRKLELEGI 109


>gi|327533668|pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like
          Methyltransferase
          Length = 189

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
          I  +   L G+ V+++ AG G L    L+ GA  V+ +E DQ+   ++  
Sbjct: 36 IVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIAR 85


>gi|317498027|ref|ZP_07956331.1| methyltransferase domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894703|gb|EFV16881.1| methyltransferase domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 195

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL+   +  ++ +     D   ++++G G G     L     + V     D+    IL  
Sbjct: 18  FLMRDALRDEMIKKICIRDTDNILDVGCGDGTFLHEL--TRWKDVEGYGIDESEDKILIA 75

Query: 89  ISSQHPNRLEIIQDDALKVDFEKF 112
             +      E    D L  D   F
Sbjct: 76  KQTWPELHFETGYSDFLSFDDNSF 99


>gi|315426891|dbj|BAJ48511.1| tRNA (adenine-N1-)-methyltransferase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 236

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI----LKDISSQHP 94
           IA  SG   G  V+E G G G L   L  L      V   D +   I    ++       
Sbjct: 68  IAAVSGVGPGYRVVEAGTGTGVLAAFLTYLVRPTGRVYSYDVRLENIETATVRMRQLGLL 127

Query: 95  NRLEIIQDDALKVDFEK-----FFNISSPIRIIANL 125
           + +E+ Q D  +   EK       +I  P R + + 
Sbjct: 128 DYIELKQGDVCEKIVEKELDAAVIDIPEPWRAVQSC 163


>gi|309389337|gb|ADO77217.1| Methyltransferase type 11 [Halanaerobium praevalens DSM 2228]
          Length = 247

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
              +++++G G G  T  L  +G + +I ++   +     K I+ +    +E I  DA  
Sbjct: 43  KNKSILDVGCGAGRTTFNLYEMGYKNIIGLDLTPEMISAAKTINKEKKTEIEFIVGDATD 102

Query: 107 VDFEK 111
           ++FE 
Sbjct: 103 LNFED 107


>gi|312074706|ref|XP_003140090.1| hypothetical protein LOAG_04505 [Loa loa]
 gi|307764748|gb|EFO23982.1| hypothetical protein LOAG_04505 [Loa loa]
          Length = 339

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
                  V+++G+G G L+      GARKVI IE         K I   +   N +E+I 
Sbjct: 61  HLFKDKVVMDVGSGTGILSMFAARAGARKVIAIEF-SNMATQSKQIVKDNNLENVIEVIH 119

Query: 102 D 102
            
Sbjct: 120 G 120


>gi|304314979|ref|YP_003850126.1| L-isoaspartyl protein carboxyl methyltransferase
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588438|gb|ADL58813.1| L-isoaspartyl protein carboxyl methyltransferase
           [Methanothermobacter marburgensis str. Marburg]
          Length = 217

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDIS 90
            +++  IAE      G+ V+E+G G G    ++  +  R   +  +E+    +   +   
Sbjct: 61  PHMVAMIAELLDLEGGMKVLEVGTGCGYNAAVIAEIIGREGHLYTVERIHSLYERARRKL 120

Query: 91  SQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                + + +I  D  +    +     S I + A  PY
Sbjct: 121 EALGYDNITVIHGDGSRGYPPEA--PYSRIYVTAAAPY 156


>gi|303230005|ref|ZP_07316779.1| methyltransferase domain protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515371|gb|EFL57339.1| methyltransferase domain protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 276

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                ++++IGAGPG+ T        + V  IE  +    +LK+ + +    L +   + 
Sbjct: 65  LTPDSSMLDIGAGPGSFTIP-FAQHIKSVTAIEPSKGMVTVLKENAKE----LNVENINI 119

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
           ++   +      SP     +  +++    L  W+  D WP   +     + K     +  
Sbjct: 120 IEELVQDLPQDGSP-----DFQFDLVAISLVLWMFPDVWPRILQ--MEQYAKGYCAIVAG 172

Query: 165 QKNSPH 170
             +  +
Sbjct: 173 IPDWKN 178


>gi|301067602|ref|YP_003789625.1| SAM-dependent methyltransferase [Lactobacillus casei str. Zhang]
 gi|300440009|gb|ADK19775.1| SAM-dependent methyltransferase [Lactobacillus casei str. Zhang]
          Length = 274

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEK-DQQFFPIL-------KD 88
           IAE+     G  ++EIG G G+L+ +L      A  V  I+     +   L         
Sbjct: 34  IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSAGHVTGIDIASPDYGAPLTLGQAWNHL 93

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           ++    +RL +  +  L  D     N      ++A+  +   +      +
Sbjct: 94  LAGPLGDRLTVHFNTNLSDDLGPIVNQHFDRVVLAHSLWYFASANALALL 143


>gi|284988874|ref|YP_003407428.1| type 11 methyltransferase [Geodermatophilus obscurus DSM 43160]
 gi|284062119|gb|ADB73057.1| Methyltransferase type 11 [Geodermatophilus obscurus DSM 43160]
          Length = 273

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              G+ ++++G GPG +T  L    A  +V+ ++         + ++ +   R+E    D
Sbjct: 41  LRPGLDLLDVGCGPGTITVDLAERVAPGRVLAVDLSPDPLDEARALAGRRGVRVEFAVGD 100

Query: 104 A 104
            
Sbjct: 101 V 101


>gi|257885489|ref|ZP_05665142.1| modification methylase HemK [Enterococcus faecium 1,231,501]
 gi|257821345|gb|EEV48475.1| modification methylase HemK [Enterococcus faecium 1,231,501]
          Length = 290

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 51  VIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           VI+IG G G +   L        V  ++  ++   + K+ + +   ++     D L    
Sbjct: 127 VIDIGTGTGAIAISLKAARRNWHVSAVDLSEEALEVAKENAQKEGTKISFYHGDTLGPVM 186

Query: 110 EKFFNISSPIRIIANLPY 127
           ++ F++     II+N PY
Sbjct: 187 DQQFDV-----IISNPPY 199


>gi|218438218|ref|YP_002376547.1| methyltransferase type 12 [Cyanothece sp. PCC 7424]
 gi|218170946|gb|ACK69679.1| Methyltransferase type 12 [Cyanothece sp. PCC 7424]
          Length = 242

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 19/99 (19%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
           S++ +L  Y                 +L  I           ++E+G G G L+  LL  
Sbjct: 18  SIRQLLPKY---------------EEVLDVIVSLVPPG-VEQILELGCGTGELSLKLLNR 61

Query: 69  GAR-KVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDA 104
             + K++ ++  ++     +       + +R + +Q D 
Sbjct: 62  YPKVKIVALDYSERMITYAQTKIVDKGYSDRWKGVQLDF 100


>gi|170113200|ref|XP_001887800.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164637161|gb|EDR01448.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 531

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 29  FLLDLNILKKIAESSGS---LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           FL+D NI  KI  S+            EIG+G G L    L      ++    D+
Sbjct: 469 FLVDPNI--KIISSANVPCQRKDWWREEIGSGFGAL----LPREVGDIVFEGVDE 517


>gi|163757237|ref|ZP_02164336.1| L-isoaspartyl protein carboxyl methyltransferase
           (protein-L-isoaspartate(D-aspartate) [Kordia algicida
           OT-1]
 gi|161322815|gb|EDP94165.1| L-isoaspartyl protein carboxyl methyltransferase
           (protein-L-isoaspartate(D-aspartate) [Kordia algicida
           OT-1]
          Length = 215

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEI 99
           +      G  ++EIG G G  T MLL LGA KV  IE+ ++ F        +   R   +
Sbjct: 74  QLLEIKKGAKILEIGTGSGYQTAMLLELGA-KVYSIERQKELFKRTSLFLPKLGYRPKRL 132

Query: 100 IQDDALK 106
           I  D  K
Sbjct: 133 IFGDGYK 139


>gi|160881542|ref|YP_001560510.1| methyltransferase type 12 [Clostridium phytofermentans ISDg]
 gi|160430208|gb|ABX43771.1| Methyltransferase type 12 [Clostridium phytofermentans ISDg]
          Length = 275

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
               V+E+G G G++T+ L   G   +I I+  +    I ++             DD L 
Sbjct: 37  KDGLVLELGCGTGSITRRLFERGYD-MIGIDLSEDMLEIAREKDMDVGYSF----DDILY 91

Query: 107 VDFE----KFFNISSPIRIIANLPYNIGTR 132
           ++ +    + +   S +  I +    I   
Sbjct: 92  LNQDMREFELYGTVSAVVSICDSMNYITKP 121


>gi|34540837|ref|NP_905316.1| hypothetical protein PG1104 [Porphyromonas gingivalis W83]
 gi|81833778|sp|Q7MVG0|TRMN6_PORGI RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|34397151|gb|AAQ66215.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 255

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQ--QFFPILKDISSQHPNRL 97
           +++GS+     ++IG G G +  ML     + +V  IE D            +S   +R+
Sbjct: 36  DAAGSIP-QHCLDIGTGTGLIALMLAQRFPQARVQGIEIDPIAAECARANAAASPFSDRI 94

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            I   D L    E          I++N P+   +
Sbjct: 95  VIASGDILDSSLESLIGNQRFDLIVSNPPFFKSS 128


>gi|24380323|ref|NP_722278.1| hypothetical protein SMU.1979c [Streptococcus mutans UA159]
 gi|24378339|gb|AAN59584.1|AE015021_5 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 317

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +IEIG+G GNL + ++   ++ +  + IE D     +   I+    + +  +Q+DA++
Sbjct: 113 IIEIGSGTGNLAETIVNNSSKSIDYMGIEVDDLLIDLSASIADVLDSSVHFVQEDAVR 170


>gi|305667254|ref|YP_003863541.1| protoporphyrinogen oxidase [Maribacter sp. HTCC2170]
 gi|88708188|gb|EAR00426.1| protoporphyrinogen oxidase [Maribacter sp. HTCC2170]
          Length = 481

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 33  LNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS 90
            ++++ I            +++IG G G +   L  L    KV  ++   +   + K  +
Sbjct: 99  EDLVRWIVSDLEHGKSEINILDIGTGSGCIAVSLAKLLPNSKVYALDISNKALEVAKKNA 158

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             +   +E +Q D L +             I++N PY
Sbjct: 159 ILNQVEVEFLQADVLTLKELHL----KFDVIVSNPPY 191


>gi|321442023|gb|ADW85426.1| arg methyltransferase [Spodoptera frugiperda]
          Length = 244

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|325676073|ref|ZP_08155755.1| methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325553113|gb|EGD22793.1| methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 259

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             +SG  DG  V+++GAG GN        GA  V+  +   + F   ++++++    L+ 
Sbjct: 23  VRASGVHDGQRVLDVGAGTGNAAIPAALTGAD-VVASDLTPELFDRGRELAAKRGAHLDW 81

Query: 100 IQDDA 104
            + DA
Sbjct: 82  READA 86


>gi|291458019|ref|ZP_06597409.1| ribosomal protein L11 methyltransferase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291419351|gb|EFE93070.1| ribosomal protein L11 methyltransferase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 384

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP-NRLEIIQ 101
              G+ V++IG G G L    L LGA  V   + D+     +++  ++++ P +R  +  
Sbjct: 217 VRPGMRVLDIGTGSGILGIAALKLGAATVDATDLDEAAAEAVRENLLANRLPRDRFRLRI 276

Query: 102 DDA 104
            + 
Sbjct: 277 GNV 279


>gi|261208267|ref|ZP_05922940.1| modification methylase HemK [Enterococcus faecium TC 6]
 gi|289565644|ref|ZP_06446090.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium D344SRF]
 gi|260077524|gb|EEW65242.1| modification methylase HemK [Enterococcus faecium TC 6]
 gi|289162612|gb|EFD10466.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium D344SRF]
          Length = 290

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 51  VIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           VI+IG G G +   L        V  ++  ++   + K+ + +   ++     D L    
Sbjct: 127 VIDIGTGTGAIAISLKAARRNWHVSAVDLSEEALEVAKENAQKEGTKISFYHGDTLGPVM 186

Query: 110 EKFFNISSPIRIIANLPY 127
           ++ F++     II+N PY
Sbjct: 187 DQQFDV-----IISNPPY 199


>gi|290579704|ref|YP_003484096.1| hypothetical protein SmuNN2025_0178 [Streptococcus mutans NN2025]
 gi|254996603|dbj|BAH87204.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 324

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +IEIG+G GNL + ++   ++ +  + IE D     +   I+    + +  +Q+DA++
Sbjct: 120 IIEIGSGTGNLAETIVNNSSKSIDYMGIEVDDLLIDLSASIADVLDSSVHFVQEDAVR 177


>gi|229138061|ref|ZP_04266659.1| Methyltransferase [Bacillus cereus BDRD-ST26]
 gi|228645406|gb|EEL01640.1| Methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 214

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 14/133 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  +  ++   +   V +IG+G G  +  LL  G   VI +E +     + +   +Q+P 
Sbjct: 26  IDYLLSANELNENQIVADIGSGTGIFSHQLLESG-LHVIGVEPNDDMRKMAEQSLNQYP- 83

Query: 96  RLEIIQDDA----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--------WISADTW 143
           R + I+  A    LK +      ++          + I  + +          W S D  
Sbjct: 84  RFQSIKATAENTTLKENSVDLVTVAQAFHWFDKEAFKIECQRILKQKAHVALVWNSRDVT 143

Query: 144 PPFWESLTLLFQK 156
            P  +    + QK
Sbjct: 144 SPLIQENAEICQK 156


>gi|226897702|gb|ACO90222.1| tetrahydroprotoberberine N-methyltransferase [Eschscholzia
           californica]
          Length = 350

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 5/132 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP-NRLEII 100
           +   DG TV++IG G G L   +        V  +   +     ++  + +     +++I
Sbjct: 117 AQIKDGQTVLDIGCGQGGLVLYIAEKYKNCHVTGLTNSKAQANYIEQQAEKLELTNVDVI 176

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
             D  K D +K ++    I ++  + +    +L    +S          +  +  K    
Sbjct: 177 FADVTKFDTDKTYD---RILVVETIEHMKNIQLFMKKLSTWMTEDSLLFVDHISHKTFNH 233

Query: 161 RITAQKNSPHYG 172
              A      Y 
Sbjct: 234 NFEALDEDDWYS 245


>gi|198284624|ref|YP_002220945.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666884|ref|YP_002427297.1| cyclopropane-fatty-acyl-phospholipid synthase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198249145|gb|ACH84738.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519097|gb|ACK79683.1| cyclopropane-fatty-acyl-phospholipid synthase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 419

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L  I        G  +++IG G G L     T    + + +   +Q F   K+   +   
Sbjct: 159 LDHICRKLHLQPGEKLLDIGCGWGGLLSWAATHYGIQGVGVTLSEQQFAYAKERMEREGL 218

Query: 94  PNRLEIIQDDALKVDFEKFFN 114
            +R+EI   D   +    +F+
Sbjct: 219 ADRVEIRLQDYRDIPERDYFD 239


>gi|261405259|ref|YP_003241500.1| hypothetical protein GYMC10_1407 [Paenibacillus sp. Y412MC10]
 gi|261281722|gb|ACX63693.1| Methyltransferase type 12 [Paenibacillus sp. Y412MC10]
          Length = 702

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           G  V++IG G G L  ++       + + I+        L+          E+++ DAL 
Sbjct: 441 GTAVLDIGPGGGVLLDLIEERLPHARPVGIDISSNVIEALEKRKRLEHKTWEVLKGDAL- 499

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRL 133
                  +   P  +   +  +I   L
Sbjct: 500 ----NLRDYVKPGSVDTVIFSSILHEL 522


>gi|206977834|ref|ZP_03238723.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217958849|ref|YP_002337397.1| hypothetical protein BCAH187_A1428 [Bacillus cereus AH187]
 gi|206743931|gb|EDZ55349.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217066156|gb|ACJ80406.1| conserved hypothetical protein [Bacillus cereus AH187]
          Length = 251

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 14/133 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  +  ++   +   V +IG+G G  +  LL  G   VI +E +     + +   +Q+P 
Sbjct: 26  IDYLLSANELNENQIVADIGSGTGIFSHQLLESG-LHVIGVEPNDDMRKMAEQSLNQYP- 83

Query: 96  RLEIIQDDA----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--------WISADTW 143
           R + I+  A    LK +      ++          + I  + +          W S D  
Sbjct: 84  RFQSIKATAENTTLKENSVDLVTVAQAFHWFDKEAFKIECQRILKQKAHVALVWNSRDVT 143

Query: 144 PPFWESLTLLFQK 156
            P  +    + QK
Sbjct: 144 SPLIQENAEICQK 156


>gi|162147545|ref|YP_001602006.1| protein-L-isoaspartate O-methyltransferase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786122|emb|CAP55704.1| Protein-L-isoaspartate O-methyltransferase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 238

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 20/161 (12%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L +  I  ++ + +        + +GAG G L   LL     +V  +E D     I K  
Sbjct: 82  LTEPRIAGRMVQIAAPQAAQRALVVGAGTGYL-AALLARLELQVTALESDAALSAIGKAF 140

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
            +     +  +                        +  +   R + + +           
Sbjct: 141 CAVEAPGVTWVDG--------PLQAGDPAHAPFDLIVIDGAVREVPHALPGQLAEHGRIV 192

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
             +  Q  V     A+                     +FD+
Sbjct: 193 CVIWPQGGVASACIAEP----------TAQGLA-VRRVFDV 222


>gi|134284097|ref|ZP_01770791.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 305]
 gi|134244549|gb|EBA44653.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 305]
          Length = 624

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE  G+ DG+ V++  A PG  T  +L L   +V+ +E D    P + +  ++     ++
Sbjct: 424 AEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIDENLARLSLTADV 483

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-----FNWISADTWPPFW 147
              DA   D  ++ +     R++A++P +  + ++       W+      P  
Sbjct: 484 RVGDA--ADPAQWHDGRPFDRVLADVPCS-ASGIVRRHPDIRWLRRAADIPAL 533


>gi|268560682|ref|XP_002646266.1| Hypothetical protein CBG11971 [Caenorhabditis briggsae]
          Length = 139

 Score = 36.3 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 122 IANLPYNIGTRLLFNWISADTWPPFWES-----LTLLFQKEVGERITAQKNSPHYGRLSV 176
              +P+   + +   ++   ++           LTL FQ EV +R+ +        R+S+
Sbjct: 53  TTKMPFEQKSAIYGRYLRDMSYRRGVWEYGRVPLTLTFQLEVAKRLCSPIACDTRSRISI 112

Query: 177 LTGWRTK 183
           +  +  +
Sbjct: 113 MAQFMFR 119


>gi|331089867|ref|ZP_08338760.1| hypothetical protein HMPREF1025_02343 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330403564|gb|EGG83122.1| hypothetical protein HMPREF1025_02343 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 347

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           A  S   +  TV+ IG GP  +  +L        K+I+ E D +    +K+    +P+ L
Sbjct: 160 ARISEIGEEDTVVIIGGGPTGICTLLCVMLKNPEKIILCEVDPKRIAFVKE---HYPDVL 216

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
            +   +  + D E+F   +S       +    G+   F        P    ++  L+++
Sbjct: 217 VV---NPKETDAERFVKENSRHNGADRVLEVAGSSDTFELAWKVARPNAIVTVVALYEE 272


>gi|317505204|ref|ZP_07963138.1| N6-adenine-specific methyltransferase [Prevotella salivae DSM
           15606]
 gi|315663704|gb|EFV03437.1| N6-adenine-specific methyltransferase [Prevotella salivae DSM
           15606]
          Length = 176

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI-IQDDALKVDFEKFFN 114
           AG G+++  L++ G ++V+ +E D+  F  ++   S+     +I I+ D  +        
Sbjct: 52  AGTGSISLELVSRGCKQVVSVEADRDHFNFIRQCFSKLGEDKDILIRGDVFRFIKRCHEQ 111

Query: 115 ISSPIRIIANLPYNI 129
                 I A+ PY +
Sbjct: 112 FD---FIFADPPYAL 123


>gi|297561117|ref|YP_003680091.1| methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845565|gb|ADH67585.1| Methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 284

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +++++ +++    G  V+++G G G  ++     G R V+ ++ D++   + + +
Sbjct: 51  LVERVTDAA---PGPDVVDVGCGTGIASRQFQAAGCR-VLGVDPDERMAELARRL 101


>gi|289167411|ref|YP_003445680.1| ribosomal protein methyltransferase [Streptococcus mitis B6]
 gi|288906978|emb|CBJ21812.1| ribosomal protein methyltransferase [Streptococcus mitis B6]
          Length = 325

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA ++   + D     + ++    +P    + +   
Sbjct: 177 LRGGETVLDVGTGSGVLSIASSLLGATEIFAYDLDDVAVRVAQENIELNPGMENIHVAAG 236

Query: 103 DALK 106
           D LK
Sbjct: 237 DLLK 240


>gi|282861058|ref|ZP_06270123.1| Methyltransferase type 12 [Streptomyces sp. ACTE]
 gi|282563716|gb|EFB69253.1| Methyltransferase type 12 [Streptomyces sp. ACTE]
          Length = 253

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/106 (11%), Positives = 33/106 (31%), Gaps = 10/106 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +       V+++  G G++T  L           ++ D     I +       +R+  + 
Sbjct: 41  AVVGPAPRVLDLACGTGSITDRLFKRFPDATSTGVDLDPALLAIARGTFEG-DDRVTFVT 99

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            D          + +   R+       + T    +W+ ++     +
Sbjct: 100 AD--------LKDPAWTERLPHTSYDAVLTATALHWLHSEPLAELY 137


>gi|158321032|ref|YP_001513539.1| methyltransferase type 11 [Alkaliphilus oremlandii OhILAs]
 gi|158141231|gb|ABW19543.1| Methyltransferase type 11 [Alkaliphilus oremlandii OhILAs]
          Length = 248

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
            +     ++E+  G GN+T  L   G R +  ++  +    + K+ +      +  IQ D
Sbjct: 35  DNRKPKKILELACGTGNITIPLANKGYR-LTGVDISEDMLMVAKNKAIDSNQNVLFIQQD 93

Query: 104 ALKVDFEKFFN 114
            ++++F++ F+
Sbjct: 94  MVELEFDEKFD 104


>gi|119485682|ref|ZP_01619957.1| putative deacetylase sulfotransferase [Lyngbya sp. PCC 8106]
 gi|119457007|gb|EAW38134.1| putative deacetylase sulfotransferase [Lyngbya sp. PCC 8106]
          Length = 527

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +       TV+EIG G G  T  LL    + +I  +   +     +D   +   R+  ++
Sbjct: 349 APYIQSHQTVLEIGIG-GGKTAALLLKYCQSLICADISTKMLQTTRDRLGE--ERVSYVK 405

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
            D LK+  E     S       +   +I  R +FN+++        E L L 
Sbjct: 406 LDGLKL--EGINPGSIDFCFCYDTMVHIEPRDIFNYLTQIPQLMRGERLCLF 455


>gi|302546062|ref|ZP_07298404.1| putative methyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302463680|gb|EFL26773.1| putative methyltransferase [Streptomyces himastatinicus ATCC 53653]
          Length = 236

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 50  TVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPN----RLEIIQDD 103
            V+++G G G  TQ L L     KV  +E D      ++   +  P     R+++++ D
Sbjct: 21  RVLDVGLGQG--TQALRLARAGHKVTGLESDPAMLEAVRTALADEPEGIRQRVKLLEGD 77


>gi|302340003|ref|YP_003805209.1| methyltransferase type 11 [Spirochaeta smaragdinae DSM 11293]
 gi|301637188|gb|ADK82615.1| Methyltransferase type 11 [Spirochaeta smaragdinae DSM 11293]
          Length = 242

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 11/88 (12%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G +++EIGAG G  T  L  +    V   +   Q    LK+ ++       +   D 
Sbjct: 67  ITPGSSILEIGAGSGRYTLPLAKVSGH-VTATDISAQMLAHLKENAAAAG----LSNIDT 121

Query: 105 LKVDFEKF------FNISSPIRIIANLP 126
            K+D+         F     +   A  P
Sbjct: 122 RKLDWNTIELGTLGFEKQFDLVFAAMCP 149


>gi|260576243|ref|ZP_05844235.1| methyltransferase small [Rhodobacter sp. SW2]
 gi|259021511|gb|EEW24815.1| methyltransferase small [Rhodobacter sp. SW2]
          Length = 252

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK----VIVIEKDQQFFPILKDISSQHPN 95
           A   G+  G +V+++G G G     +L LGAR     +  +E    +  + +  ++++  
Sbjct: 36  AACVGASAGQSVLDLGCGAGT---AVLCLGARVPGLALAGLELQADYADLARRNAARNGL 92

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
            LE+++ D  ++      +      +IAN PY   T
Sbjct: 93  ALEVVEGDLAQMPGVLLRDFD---HVIANPPYYPTT 125


>gi|261367409|ref|ZP_05980292.1| putative precorrin-6y C5,15-methyltransferase [Subdoligranulum
           variabile DSM 15176]
 gi|282570175|gb|EFB75710.1| putative precorrin-6y C5,15-methyltransferase [Subdoligranulum
           variabile DSM 15176]
          Length = 400

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 8/132 (6%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPIL--KDISSQHPN 95
           I  + G   G T+ ++GAG G+++  L        V  IE  ++    L  ++    H  
Sbjct: 237 ILSALGPKPGETIWDVGAGTGSVSVELAASTNGGAVYAIEC-EEAAQELIEENRRKFHAW 295

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            L  I+  A     +   N+  P  +          ++L   +  +       S   L  
Sbjct: 296 NLHEIKGRA----PQALENLPVPDAVFVGGSKGELEQILSLALEKNPGVRLCVSCIALET 351

Query: 156 KEVGERITAQKN 167
            E   R   +  
Sbjct: 352 LETVRRFCREHG 363


>gi|307153605|ref|YP_003888989.1| family 2 glycosyl transferase [Cyanothece sp. PCC 7822]
 gi|306983833|gb|ADN15714.1| glycosyl transferase family 2 [Cyanothece sp. PCC 7822]
          Length = 495

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 16/122 (13%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+EIG G G L   L  +  +  + I+ D Q   I ++          + Q +A
Sbjct: 60  VQPESDVLEIGCGLGYL---LNAVNPQSGLGIDIDPQVIEIAREKF--LDLNFSVAQAEA 114

Query: 105 L----KVDFEKFFNISSPIRIIANLPYNI------GTRLLFNWISADTWPPFWESLTLLF 154
                  D+    N  S ++ I     NI       T+++  +     W    +  T L 
Sbjct: 115 FSHEKHFDYILLDNTISSLKNIQKTFSNIHQVCKPSTKIILTF-HNPAWEIILKLATFLG 173

Query: 155 QK 156
           Q+
Sbjct: 174 QR 175


>gi|190892591|ref|YP_001979133.1| S-adenosyl-methyltransferase [Rhizobium etli CIAT 652]
 gi|262825238|sp|B3PTW8|RSMH_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190697870|gb|ACE91955.1| S-adenosyl-methyltransferase protein [Rhizobium etli CIAT 652]
          Length = 341

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L+++  +     G  +++   G G  T  +L  GA +VI +++D       + + + 
Sbjct: 21  PVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGA-EVIALDRDPTAIAAGQAMVAA 79

Query: 93  HPNRLEIIQDDA 104
           H  RL+++    
Sbjct: 80  HGGRLKLVHSQF 91


>gi|171058594|ref|YP_001790943.1| tRNA (guanine-N(7)-)-methyltransferase [Leptothrix cholodnii SP-6]
 gi|170776039|gb|ACB34178.1| tRNA (guanine-N(7)-)-methyltransferase [Leptothrix cholodnii SP-6]
          Length = 211

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 24/158 (15%)

Query: 46  LDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
            D  TV+EIG G G  T  +         + +E        +LK I       L I+Q D
Sbjct: 33  RDAPTVLEIGFGMGTATAQIAQARPELNFLGVEVHAPGVGALLKQIGETGLTNLRIVQHD 92

Query: 104 ALKVDFEKF----------FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
           A++V  +            F      +   N    I    +   ++      +    T  
Sbjct: 93  AVEVLEQMLAPASLAGVHIFFPDPWHKKKHNKRRLIQADFVARLMTRLAPGGYLHCATDW 152

Query: 154 --FQKEVGERITAQKN----------SPHYGRLSVLTG 179
             + +++ E ++A+             P Y  L+    
Sbjct: 153 QPYAEQMLEVLSAEPGLVNTADGYAPKPDYRPLTKFEQ 190


>gi|169836849|ref|ZP_02870037.1| hypothetical protein cdivTM_07039 [candidate division TM7
           single-cell isolate TM7a]
          Length = 249

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            E         ++++G G G LT+ +      KV+ ++  Q+F    + +       ++ 
Sbjct: 27  IEWLNPKKDEYILDLGCGDGVLTKEISKYRC-KVLGLDGSQKFVEATRKLG------VDA 79

Query: 100 IQDDALKVDFEKFFN 114
           IQ DA  ++FE  F+
Sbjct: 80  IQGDAQNMNFENEFD 94


>gi|161507893|ref|YP_001577857.1| methlytransferase [Lactobacillus helveticus DPC 4571]
 gi|172048346|sp|A8YWH0|TRMB_LACH4 RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|160348882|gb|ABX27556.1| Methlytransferase [Lactobacillus helveticus DPC 4571]
 gi|323466060|gb|ADX69747.1| tRNA (guanine-N(7)-)-methyltransferase [Lactobacillus helveticus
           H10]
          Length = 217

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 14/128 (10%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV-IEIGAGPG 59
           M + NK  ++K +++ +   P+  + QN   D    KKI  ++   +  T+ IE+G+G G
Sbjct: 1   MRLRNKPWAVK-LVNEH---PESVL-QNP--DPE--KKIDWAARFGNDNTIEIEVGSGKG 51

Query: 60  NLTQMLLTLGARK-VIVIEKDQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
           +    L      K  + +E        IL+    +  + L+I++ DA   D   FF  +S
Sbjct: 52  HFITTLAENNPDKNYVALELQTTAAGIILRTKLEKGLDNLQILRGDA--ADINCFFPENS 109

Query: 118 PIRIIANL 125
              I  N 
Sbjct: 110 TNVIYLNF 117


>gi|159044680|ref|YP_001533474.1| protein-L-isoaspartate O-methyltransferase [Dinoroseobacter shibae
           DFL 12]
 gi|209573179|sp|A8LQK6|PIMT_DINSH RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|157912440|gb|ABV93873.1| protein-L-isoaspartate O-methyltransferase [Dinoroseobacter shibae
           DFL 12]
          Length = 216

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +I+  + +++       V+E+G G G     +L+  AR+V  +++ ++     +     
Sbjct: 63  PSIVGLMTQAAEIGPRHHVLEVGTGAGY-QAAILSQLARRVWTVDRHRRLTRAAEARFKA 121

Query: 93  HP-NRLEIIQDD 103
                + ++  D
Sbjct: 122 LDLTNVTVLTGD 133


>gi|94497595|ref|ZP_01304164.1| hypothetical protein SKA58_08769 [Sphingomonas sp. SKA58]
 gi|94423012|gb|EAT08044.1| hypothetical protein SKA58_08769 [Sphingomonas sp. SKA58]
          Length = 214

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 15/161 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
            ++       DG TV+EIG G G NL  +        +  ++  +      +   ++   
Sbjct: 31  DRLIADLAVPDGGTVLEIGCGTGRNLIAVGKAWPQAPLYGVDISEAMLNTARGSVAKAGM 90

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
             R+ + Q DA   D    F           +  +    ++ +W            +   
Sbjct: 91  AQRVTLAQGDACGFDALTLFGR----ATFDRVFISYALSMIPDW--EAALRQAARCVAPG 144

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194
            + E+ +    ++    + R   L GW       F +SP  
Sbjct: 145 GKLEIVDFGQQERLPRFWKR--ALFGWLG----AFHVSPRA 179


>gi|21225216|ref|NP_630995.1| O-methyltransferase [Streptomyces coelicolor A3(2)]
 gi|8218158|emb|CAB92590.1| putative O-methyltransferase [Streptomyces coelicolor A3(2)]
          Length = 696

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +I+  + E      G  ++E+GAG G    L   L+      V  I+ D+      +  
Sbjct: 360 PDIVAMMLEQLDVQPGQKILELGAGTGFNAGLLGYLVGETGH-VTTIDVDEDIVAGARGG 418

Query: 90  SSQHP-NRLEIIQDD 103
            +    + +E+I  D
Sbjct: 419 LAAAGIHNVEVILGD 433


>gi|18466769|ref|NP_569576.1| putative DNA modification methylase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16506085|emb|CAD09971.1| putative DNA modification methylase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
          Length = 567

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 17/116 (14%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             ++  P   +         I + +A +     G  ++E  AG G+L   +  +    V 
Sbjct: 403 KSHQFYPTPRL---------IAEYVARAIELKPGEKLLEPEAGRGDLLACI-DVNPEDVT 452

Query: 75  VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            IE    F  IL  +   + N    +  D +K  + +        +I+ N PY++G
Sbjct: 453 CIEVAPLFADIL--LGKGYTNT---VCCDFMK--WSEDNVGYQFDKIVMNPPYSLG 501


>gi|304321488|ref|YP_003855131.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis
           HTCC2503]
 gi|303300390|gb|ADM09989.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis
           HTCC2503]
          Length = 331

 Score = 36.3 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L    +L  + +      G  +++   G G  T+ LL  GA  +I  ++D       + +
Sbjct: 4   LHQPVLLDAVIDRLSPQPGEILVDGTFGAGGYTRRLLEAGA-TIIAFDRDPTAIAAGRSL 62

Query: 90  SSQHPNRLEIIQDDA 104
             +  + L +++   
Sbjct: 63  ERECGDALTLVEAPF 77


>gi|311894402|dbj|BAJ26810.1| putative methyltransferase [Kitasatospora setae KM-6054]
          Length = 236

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             G+ V+++G G G+L ++L   G  +V  ++       + ++  +        +  DA
Sbjct: 64  TAGLDVLDVGCGTGSLARLLAEAG-HRVTGVDLAPAMVDLAREKFAAAGLTGRFLVGDA 121


>gi|304392263|ref|ZP_07374205.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130]
 gi|303296492|gb|EFL90850.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130]
          Length = 394

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L+++  +   LDG T+++   G G  ++ +L  GA  VI I++D       + + ++   
Sbjct: 69  LEEVLRALRPLDGSTIVDATFGAGGYSRAMLGGGA-TVIGIDRDPDAVAAAQPMLAEFDG 127

Query: 96  RLEIIQDDALKVD 108
            L +      ++D
Sbjct: 128 SLTLHHGRFSQLD 140


>gi|294675830|ref|YP_003576445.1| ribosomal RNA small subunit methyltransferase B [Rhodobacter
           capsulatus SB 1003]
 gi|294474650|gb|ADE84038.1| ribosomal RNA small subunit methyltransferase B-1 [Rhodobacter
           capsulatus SB 1003]
          Length = 421

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A    +  G  V+++ A PG  T  LL  GAR V  ++        L++  ++   R E 
Sbjct: 223 ARVLNAQPGEHVLDLCAAPGGKTLQLLAAGAR-VTALDVSAPRLDRLEENLARCGMRAET 281

Query: 100 IQDDALKVDFEKFFN 114
           +  DAL       F+
Sbjct: 282 VVADALDWTPAAPFD 296


>gi|289423905|ref|ZP_06425698.1| ribosomal protein L11 methyltransferase [Peptostreptococcus
           anaerobius 653-L]
 gi|289155682|gb|EFD04354.1| ribosomal protein L11 methyltransferase [Peptostreptococcus
           anaerobius 653-L]
          Length = 314

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
             +   V +IG G G L      LGA++VI I+ D+    + K+
Sbjct: 175 VKEDSVVFDIGCGSGILGICAAKLGAKEVIGIDIDEVAVKVAKE 218


>gi|260103195|ref|ZP_05753432.1| tRNA (guanine-N(7)-)-methyltransferase [Lactobacillus helveticus
           DSM 20075]
 gi|260082986|gb|EEW67106.1| tRNA (guanine-N(7)-)-methyltransferase [Lactobacillus helveticus
           DSM 20075]
 gi|328464661|gb|EGF36007.1| tRNA (guanine-N(7)-)-methyltransferase [Lactobacillus helveticus
           MTCC 5463]
          Length = 217

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 14/128 (10%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV-IEIGAGPG 59
           M + NK  ++K +++ +   P+  + QN   D    KKI  ++   +  T+ IE+G+G G
Sbjct: 1   MRLRNKPWAVK-LVNEH---PESVL-QNP--DPE--KKIDWAARFGNDNTIEIEVGSGKG 51

Query: 60  NLTQMLLTLGARK-VIVIEKDQQFFP-ILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117
           +    L      K  + +E        IL+    +  + L+I++ DA   D   FF  +S
Sbjct: 52  HFITTLAENNPDKNYVALELQTTAAGIILRTKLEKGLDNLQILRGDA--ADINCFFPENS 109

Query: 118 PIRIIANL 125
              I  N 
Sbjct: 110 TNVIYLNF 117


>gi|187932009|ref|YP_001891994.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712918|gb|ACD31215.1| RNA methyltransferase, trmA family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 449

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++K+  E     +  ++I++  G GN T  + +  A+ VI +E +       K+ +
Sbjct: 285 INKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI-SQHAKTVIGVEGEPTMVKRAKETA 343


>gi|254374038|ref|ZP_04989520.1| RNA methyltransferase [Francisella novicida GA99-3548]
 gi|151571758|gb|EDN37412.1| RNA methyltransferase [Francisella novicida GA99-3548]
          Length = 449

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++K+  E     +  ++I++  G GN T  + +  A+ VI +E +       K+ +
Sbjct: 285 INKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI-SQHAKTVIGVEGEPTMVKRAKETA 343


>gi|224456895|ref|ZP_03665368.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370321|ref|ZP_04986326.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874638|ref|ZP_05247348.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|151568564|gb|EDN34218.1| hypothetical protein FTBG_00076 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840637|gb|EET19073.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella
           tularensis subsp. tularensis MA00-2987]
          Length = 449

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++K+  E     +  ++I++  G GN T  + +  A+ VI +E +       K+ +
Sbjct: 285 INKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI-SQHAKTVIGVEGEPTMVKRAKETA 343


>gi|118497214|ref|YP_898264.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. novicida U112]
 gi|194323513|ref|ZP_03057290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. novicida FTE]
 gi|143581148|sp|A0Q5J5|RUMA_FRATN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|118423120|gb|ABK89510.1| RNA methyltransferase, trmA family [Francisella novicida U112]
 gi|194322368|gb|EDX19849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. novicida FTE]
          Length = 449

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++K+  E     +  ++I++  G GN T  + +  A+ VI +E +       K+ +
Sbjct: 285 INKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI-SQHAKTVIGVEGEPTMVKRAKETA 343


>gi|54112953|gb|AAV29110.1| NT02FT0992 [synthetic construct]
          Length = 449

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++K+  E     +  ++I++  G GN T  + +  A+ VI +E +       K+ +
Sbjct: 285 INKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI-SQHAKTVIGVEGEPTMVKRAKETA 343


>gi|16082495|ref|NP_393670.1| SAM-dependent methyltransferase [Thermoplasma acidophilum DSM
          1728]
          Length = 194

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-KDQQ--FFP 84
          +FL DL  +  I +  G      ++++G G G  T     L A   I ++  D       
Sbjct: 25 HFLRDLYAI--IVDDVGRFKPSAILDVGCGTG--TADYFILSAFPDISVDCIDPSPYMIS 80

Query: 85 ILKDISSQHPNRLE 98
          I +   S+  +R+ 
Sbjct: 81 IARKKLSKFGSRVR 94


>gi|89256815|ref|YP_514177.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica LVS]
 gi|115315201|ref|YP_763924.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502981|ref|YP_001429046.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009854|ref|ZP_02274785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254368098|ref|ZP_04984118.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|290953511|ref|ZP_06558132.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313203|ref|ZP_06803862.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|122324802|sp|Q0BKU7|RUMA_FRATO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122500404|sp|Q2A275|RUMA_FRATH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|89144646|emb|CAJ79970.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica LVS]
 gi|115130100|gb|ABI83287.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253908|gb|EBA53002.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|156253584|gb|ABU62090.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 449

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++K+  E     +  ++I++  G GN T  + +  A+ VI +E +       K+ +
Sbjct: 285 INKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI-SQHAKTVIGVEGEPTMVKRAKETA 343


>gi|225619185|ref|YP_002720411.1| hemolysin protein [Brachyspira hyodysenteriae WA1]
 gi|1708222|sp|Q06803|HLYA_TREHY RecName: Full=Hemolysin A
 gi|296626|emb|CAA43858.1| hemolysin [Brachyspira hyodysenteriae]
 gi|225214004|gb|ACN82738.1| hemolysin protein [Brachyspira hyodysenteriae WA1]
          Length = 240

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQD-DA 104
           +    ++IGA  G  T  LL  GA+KV  ++         L++      NR+  I+D +A
Sbjct: 76  ENKICLDIGASTGGFTDCLLKHGAKKVYALDVGHNQLVYKLRN-----DNRVVSIEDFNA 130

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIG--TRLLFNWISADTW 143
             ++ E F +    + +      +I     ++F  ++   +
Sbjct: 131 KDINKEMFNDEIPSVIVSDVSFISITKIAPIIFKELNNLEF 171


>gi|116180796|ref|XP_001220247.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88185323|gb|EAQ92791.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 333

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 30 LLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
          L D     + +  I ++        V+++G G G L+      GA+ VI ++ 
Sbjct: 27 LKDEVRTRSYMNAIVQNKHIFKDKIVLDVGCGTGILSMFAAKAGAKHVIGVDM 79


>gi|304399208|ref|ZP_07381075.1| protein-L-isoaspartate O-methyltransferase [Pantoea sp. aB]
 gi|304353262|gb|EFM17642.1| protein-L-isoaspartate O-methyltransferase [Pantoea sp. aB]
          Length = 208

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++    G      V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTALLGLNPHSRVLEIGTGSGYQTAILAHL-VDHVYSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNWISAD 141
              +L++        D  + +    P    I+   P  I   L+       
Sbjct: 116 RLKQLDLHNVSTRHGDGWEGWPSRGPFDAIIVTAAPPEIPIALIAQLAEGG 166


>gi|303232371|ref|ZP_07319063.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
 gi|302481455|gb|EFL44523.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
          Length = 331

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS----------SQHPNRLE 98
            V+ IG G  +L + LL      +V  +E D +   + ++            ++   RL 
Sbjct: 146 HVLVIGGGGFSLPKWLLAHCPHAQVTCVEIDPRIIELAREHFFVDEACAQFCAEGEERLH 205

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLP 126
           ++ DD  K   +     +    II +  
Sbjct: 206 VVCDDGWKYLQKCAAEGTRFDVIINDAF 233


>gi|302519697|ref|ZP_07272039.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces sp.
           SPB78]
 gi|302428592|gb|EFL00408.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces sp.
           SPB78]
          Length = 437

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L  IA       G  ++++G G G++          +V+ +   ++     +   ++   
Sbjct: 193 LDLIATKLDLRPGQRLLDVGCGWGSMALHAAREYGVEVVGVTLSREQAAYARKRVAEEGL 252

Query: 94  PNRLEIIQDDALKVDFEKFFNISS 117
            +++EI   D   V    F  ISS
Sbjct: 253 GDKVEIRVQDYRDVRDGPFDAISS 276


>gi|225011632|ref|ZP_03702070.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Flavobacteria bacterium MS024-2A]
 gi|225004135|gb|EEG42107.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Flavobacteria bacterium MS024-2A]
          Length = 243

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
           K++          T+++I  G G+L   L  L A+K+I ++       I K   ++    
Sbjct: 47  KRVVRLLKKEAPDTILDIATGTGDLVLALAKLNAKKIIGLDISPGMLEIGKKKVLAQNLT 106

Query: 95  NRLEIIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
           +R+++   D  AL  +   F  ++    +      + G   +F  +         E+  
Sbjct: 107 DRIKMQLGDSEALHYEDNSFAAVTVAFGVRNFENLDKGLLEIFRVLKPKGTLVILETAV 165


>gi|184201035|ref|YP_001855242.1| hypothetical protein KRH_13890 [Kocuria rhizophila DC2201]
 gi|183581265|dbj|BAG29736.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 417

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILK 87
           +I   +    G  V+E G G G L+  LL       +V   E+ ++F  I +
Sbjct: 111 QIVTMADIFPGARVVEAGVGSGALSISLLRAVGDEGRVHSFERREEFAEIAR 162


>gi|254369699|ref|ZP_04985709.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122658|gb|EDO66787.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 449

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++K+  E     +  ++I++  G GN T  + +  A+ VI +E +       K+ +
Sbjct: 285 INKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI-SQHAKTVIGVEGEPTMVKRAKETA 343


>gi|119897152|ref|YP_932365.1| ribosomal protein L11 methyltransferase [Azoarcus sp. BH72]
 gi|119669565|emb|CAL93478.1| ribosomal protein L11 methyltransferase [Azoarcus sp. BH72]
          Length = 294

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
              G +V++ G G G L      LGA  V+ I+ D +     +D +S++   L +  
Sbjct: 161 VQPGTSVLDYGCGSGILGIAAARLGAGDVLGIDIDDKAIEAARDNASRNGVTLRLQH 217


>gi|92115106|ref|YP_575034.1| hypothetical protein Csal_2990 [Chromohalobacter salexigens DSM
           3043]
 gi|91798196|gb|ABE60335.1| 16S rRNA m(2)G-966 methyltransferase [Chromohalobacter salexigens
           DSM 3043]
          Length = 228

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 8/128 (6%)

Query: 37  KKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            +I E+      G L G  V+++ AG G L    L+ GAR+   +E D      L     
Sbjct: 71  DRIRETLFNWLTGELSGARVLDLYAGTGALGLEALSRGARQACFVEADSDVAACLGTNLD 130

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR-LLFNWISADTWPPFWESL 150
                  + +  AL  DF      +    +  + P+  G        + A  W      +
Sbjct: 131 TLGANGRVHRQAAL--DFLAGAPETPFDLVFLDPPFRQGHADDACRALEARGWLGEQAWI 188

Query: 151 TLLFQKEV 158
            L  + E+
Sbjct: 189 YLEVEHEL 196


>gi|77164539|ref|YP_343064.1| hypothetical protein Noc_1026 [Nitrosococcus oceani ATCC 19707]
 gi|254433862|ref|ZP_05047370.1| tRNA (guanine-N(7)-)-methyltransferase [Nitrosococcus oceani AFC27]
 gi|91208042|sp|Q3JCB2|TRMB_NITOC RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|76882853|gb|ABA57534.1| tRNA (guanine-N(7)-)-methyltransferase [Nitrosococcus oceani ATCC
           19707]
 gi|207090195|gb|EDZ67466.1| tRNA (guanine-N(7)-)-methyltransferase [Nitrosococcus oceani AFC27]
          Length = 236

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 11/150 (7%)

Query: 41  ESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
            +  +     ++EIG G G +L Q       R  + IE        +L  + ++    + 
Sbjct: 56  AAIFNRQAERILEIGFGNGESLLQQARAAPERDFLGIEVYRPGIGHLLLRLKAEGLENIR 115

Query: 99  IIQDDALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           +I  DA +V      N            P     +    +      + +     P  W  
Sbjct: 116 VIHGDAWEVLQRALPNPSLDGVQIFFPDPWPKKRHHKRRLIQPSFVDLLERKIKPGGWFH 175

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTG 179
           L   +Q    +          + +L+    
Sbjct: 176 LATDWQDYAEQIKAVLSQHAGFNQLTNEGQ 205


>gi|30263532|ref|NP_845909.1| hypothetical protein BA_3641 [Bacillus anthracis str. Ames]
 gi|47528926|ref|YP_020275.1| hypothetical protein GBAA_3641 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186381|ref|YP_029633.1| hypothetical protein BAS3376 [Bacillus anthracis str. Sterne]
 gi|165870982|ref|ZP_02215633.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167636316|ref|ZP_02394618.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167640584|ref|ZP_02398846.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170688447|ref|ZP_02879655.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170708124|ref|ZP_02898571.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177652497|ref|ZP_02934964.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190564517|ref|ZP_03017438.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227813588|ref|YP_002813597.1| hypothetical protein BAMEG_0992 [Bacillus anthracis str. CDC 684]
 gi|228934856|ref|ZP_04097687.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229602443|ref|YP_002867778.1| hypothetical protein BAA_3668 [Bacillus anthracis str. A0248]
 gi|254686149|ref|ZP_05150008.1| hypothetical protein BantC_20145 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723546|ref|ZP_05185334.1| hypothetical protein BantA1_13879 [Bacillus anthracis str. A1055]
 gi|254738621|ref|ZP_05196324.1| hypothetical protein BantWNA_25949 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744820|ref|ZP_05202498.1| hypothetical protein BantKB_28105 [Bacillus anthracis str. Kruger
           B]
 gi|254752939|ref|ZP_05204975.1| hypothetical protein BantV_10726 [Bacillus anthracis str. Vollum]
 gi|254759211|ref|ZP_05211237.1| hypothetical protein BantA9_12966 [Bacillus anthracis str.
           Australia 94]
 gi|30258167|gb|AAP27395.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47504074|gb|AAT32750.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180308|gb|AAT55684.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164713193|gb|EDR18719.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167511452|gb|EDR86836.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167528339|gb|EDR91111.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170126932|gb|EDS95812.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170667617|gb|EDT18372.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172082171|gb|EDT67238.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190563834|gb|EDV17798.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227002745|gb|ACP12488.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|228824756|gb|EEM70557.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229266851|gb|ACQ48488.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 239

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G  V+EIG G G     +      KV  +EK++      KD  S     +++I+  A
Sbjct: 38  GANVLEIGCGTGKTAAYMTKDCGYKVTAVEKNEIMIQKAKDRWSSEGIDIQLIEGKA 94


>gi|89070878|ref|ZP_01158117.1| protein-L-isoaspartate O-methyltransferase [Oceanicola granulosus
           HTCC2516]
 gi|89043566|gb|EAR49776.1| protein-L-isoaspartate O-methyltransferase [Oceanicola granulosus
           HTCC2516]
          Length = 215

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + ++        V+E+G G G     +L+  AR++  +++ ++     + +   
Sbjct: 65  PSVVGLMTQALELSPRDKVLEVGTGSGY-QAAILSQLARRIYTVDRHRRLVREAQALF-- 121

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             + L ++   A+  D        +P   I
Sbjct: 122 --DELGLVNITAMTADGSHGLPEQAPFDRI 149


>gi|65320860|ref|ZP_00393819.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str.
           A2012]
          Length = 134

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G  V+EIG G G     +      KV  +EK++      KD  S     +++I+  A
Sbjct: 38  GANVLEIGCGTGKTAAYMTKDCGYKVTAVEKNEIMIQKAKDRWSSEGIDIQLIEGKA 94


>gi|333026484|ref|ZP_08454548.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Streptomyces sp. Tu6071]
 gi|332746336|gb|EGJ76777.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Streptomyces sp. Tu6071]
          Length = 434

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L  IA       G  ++++G G G++          +V+ +   ++     +   ++   
Sbjct: 190 LDLIATKLDLRPGQRLLDVGCGWGSMALHAAREYGVEVVGVTLSREQAAYARKRVAEEGL 249

Query: 94  PNRLEIIQDDALKVDFEKFFNISS 117
            +++EI   D   V    F  ISS
Sbjct: 250 GDKVEIRVQDYRDVRDGPFDAISS 273


>gi|321441997|gb|ADW85413.1| arg methyltransferase [Hemerophila felis]
          Length = 244

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLDDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|319936229|ref|ZP_08010649.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1]
 gi|319808803|gb|EFW05336.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1]
          Length = 255

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ E         +++I  G GN +  L   GA  ++  +  ++   + K   SQ+  ++
Sbjct: 57  KVTELLSPNPADYILDIACGNGNYSSYLAQRGA-SIVAFDYSKKMIELAKRRQSQYAKQI 115

Query: 98  EIIQDDA 104
           E    DA
Sbjct: 116 EFCVADA 122


>gi|312898994|ref|ZP_07758381.1| putative spermidine synthase [Megasphaera micronuciformis F0359]
 gi|310619901|gb|EFQ03474.1| putative spermidine synthase [Megasphaera micronuciformis F0359]
          Length = 500

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFF---PILKDISSQH--P 94
           +   +   V+ +G G G   + LL     ++ +++ D+         P+L  ++      
Sbjct: 276 AQVQNPQRVLILGGGDGLAARELLKYEGVEITLVDLDKAITDLASTNPVLTKLNEHSLTD 335

Query: 95  NRLEIIQDDALKV 107
            R+ II DDALK 
Sbjct: 336 PRVTIINDDALKF 348


>gi|302843091|ref|XP_002953088.1| hypothetical protein VOLCADRAFT_82080 [Volvox carteri f.
           nagariensis]
 gi|300261799|gb|EFJ46010.1| hypothetical protein VOLCADRAFT_82080 [Volvox carteri f.
           nagariensis]
          Length = 422

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR---LEII 100
             + G TV+++G G G L+      GA +V+ ++  ++      +++    +R   + ++
Sbjct: 114 RLMRGATVLDVGCGTGILSLFACRGGAARVVAVDGSERIAGRHAELAGYSDSRGGPMTVV 173

Query: 101 QD 102
             
Sbjct: 174 SG 175


>gi|320011734|gb|ADW06584.1| tRNA (adenine-N(1)-)-methyltransferase [Streptomyces flavogriseus
           ATCC 33331]
          Length = 302

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93
           +I   +    G  V+E G G G L+  LL        +   E+ + F  I +    ++
Sbjct: 97  QILAFADIFPGARVVEAGVGSGALSTFLLRAIGEQGMLHSYERREDFAEIAQQNVERY 154


>gi|297561676|ref|YP_003680650.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846124|gb|ADH68144.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 626

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
               +   +AE +G   G +V++   G G L    L  GA  V   ++D     I   + 
Sbjct: 153 TSPELAAWMAELAGIGAGSSVLDPACGTGVLLSAALRRGALTVFGQDRDPDALDIATALL 212

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                     + D+L+      F  S    ++ + P+
Sbjct: 213 VVPHGVSATAKGDSLR---SPAFESSRVDVVLCDPPF 246


>gi|226228554|ref|YP_002762660.1| hypothetical protein GAU_3148 [Gemmatimonas aurantiaca T-27]
 gi|226091745|dbj|BAH40190.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 192

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 7/144 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PN 95
           K+  +   L+G  VI++ AG G +    L+ GA+ V  +E        LK   +      
Sbjct: 34  KLVRA--DLEGARVIDLFAGTGAIGLEALSRGAKYVDFVEFRPSSLHALKANIAALRVTT 91

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           +  + + DAL               +       +  RL+  W+ A  W P   +      
Sbjct: 92  KARVYKKDALPFANALIAGRYDLAFVDPPYESRMLDRLIERWLEA-PWSPILVAEHASTH 150

Query: 156 K--EVGERITAQKNSPHYGRLSVL 177
           K       +T Q+       +SV 
Sbjct: 151 KLPRTVRYVTMQQVIVDDSAISVY 174


>gi|224024952|ref|ZP_03643318.1| hypothetical protein BACCOPRO_01683 [Bacteroides coprophilus DSM
           18228]
 gi|224018188|gb|EEF76186.1| hypothetical protein BACCOPRO_01683 [Bacteroides coprophilus DSM
           18228]
          Length = 237

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEII 100
           +   +   V+++G G G +  M        V  I+ D+       +  +  P  +R+ I 
Sbjct: 33  AELPEEGRVLDLGTGTGLIALMAAQRCQAPVCGIDVDEAAVEQALENVAASPWADRIRIW 92

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPY 127
           + D  ++  E          I++N PY
Sbjct: 93  KQDVREMWAE---TDGVFDAIVSNPPY 116


>gi|167586405|ref|ZP_02378793.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           ubonensis Bu]
          Length = 217

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +  ++ +         V+ IGAG G L   L    A+ V  ++ D     + +D    
Sbjct: 63  PRVEARVLQELAVKKHENVLLIGAGSGYL-AALFAARAQHVTAVDIDPVVAKLAEDNLRN 121

Query: 93  HP-NRLEIIQDDALKVDFEK 111
           +    +E+   D  +    K
Sbjct: 122 NGVTNVEVALGDGSRGWPAK 141


>gi|134103540|ref|YP_001109201.1| UbiE/COQ5 family methlytransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291008357|ref|ZP_06566330.1| UbiE/COQ5 family methlytransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133916163|emb|CAM06276.1| methyltransferase, UbiE/COQ5 family [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 267

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIE-KDQQFFPILKDISSQHPNRLEIIQ 101
               G  V+++G GPG +T  L  L G   V+ ++  D+       +  ++    +    
Sbjct: 33  HLRPGQDVLDVGCGPGTITVDLAELVGPGTVLGVDNVDEPLRTARAEAEARGTANVAFRT 92

Query: 102 DDALKVDFEK 111
            D  ++ F  
Sbjct: 93  ADVYRLPFPD 102


>gi|77166376|ref|YP_344901.1| UbiE/COQ5 methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|76884690|gb|ABA59371.1| UbiE/COQ5 methyltransferase [Nitrosococcus oceani ATCC 19707]
          Length = 215

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 45/147 (30%), Gaps = 19/147 (12%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF--FPILKDISSQHPNRLE 98
             +    G  ++++G G G LTQ+          V+  D       + +  +++  ++ E
Sbjct: 43  RHAQLSPGEQILDVGCGTGVLTQLAAEKSGPSGKVVGVDPSLPMISLARKKAARAQSQAE 102

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
                           +   +         + + L+ + + A+      E +  +  K  
Sbjct: 103 FKLG------------VVERLPFGNETFDVVLSSLMLHHLPAELKRQGLEEIHRVL-KPG 149

Query: 159 GERIT---AQKNSPHYGRLSVLTGWRT 182
           G  +     +   P +  L V      
Sbjct: 150 GRLLAVDFDRPGHPLW-WLGVWPQLFM 175


>gi|42782650|ref|NP_979897.1| hypothetical protein BCE_3600 [Bacillus cereus ATCC 10987]
 gi|42738576|gb|AAS42505.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 239

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + K++        G  V+EIG G G     +      KV  +EK++      KD  S   
Sbjct: 25  LTKQLLAQLPFRHGANVLEIGCGTGKTAAYMAKNFGYKVTAVEKNEIMIQKAKDRWSFEG 84

Query: 95  NRLEIIQDDA 104
             +++I+++ 
Sbjct: 85  LDIQLIEENV 94


>gi|18978294|ref|NP_579651.1| protein-L-isoaspartate O-methyltransferase [Pyrococcus furiosus DSM
           3638]
 gi|18894118|gb|AAL82046.1| l-isoaspartyl protein carboxyl methyltransferase [Pyrococcus
           furiosus DSM 3638]
          Length = 272

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + E +    G+ ++E+G G G    ++  +    V  IE+  +     K    +
Sbjct: 120 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLER 179

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRII 122
                + +I  D       K F   +P  +I
Sbjct: 180 AGVKNVHVILGD-----GSKGFPPKAPYDVI 205


>gi|82751193|ref|YP_416934.1| hypothetical protein SAB1463c [Staphylococcus aureus RF122]
 gi|82656724|emb|CAI81152.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 238

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            D   +++IG G G+LT  L  LG   V  ++       +    ++Q    +  ++ D  
Sbjct: 32  KDESNILDIGCGTGSLTVQLEALG--NVTGMDLSVDMLTV----AAQKSANVNWVEGDMT 85

Query: 106 KVDFEKFFNI 115
             D ++ F+I
Sbjct: 86  SFDLQQQFDI 95


>gi|15610103|ref|NP_217482.1| methyltransferase (methylase) [Mycobacterium tuberculosis H37Rv]
 gi|15842519|ref|NP_337556.1| hypothetical protein MT3044 [Mycobacterium tuberculosis CDC1551]
 gi|31794142|ref|NP_856635.1| methyltransferase (methylase) [Mycobacterium bovis AF2122/97]
 gi|121638847|ref|YP_979071.1| putative methyltransferase [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|148662814|ref|YP_001284337.1| putative methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148824156|ref|YP_001288910.1| methyltransferase [Mycobacterium tuberculosis F11]
 gi|167970012|ref|ZP_02552289.1| hypothetical methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|215404941|ref|ZP_03417122.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|215412809|ref|ZP_03421521.1| methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428416|ref|ZP_03426335.1| methyltransferase [Mycobacterium tuberculosis T92]
 gi|215431915|ref|ZP_03429834.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|215447233|ref|ZP_03433985.1| methyltransferase [Mycobacterium tuberculosis T85]
 gi|218754726|ref|ZP_03533522.1| methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|219558996|ref|ZP_03538072.1| methyltransferase [Mycobacterium tuberculosis T17]
 gi|224991339|ref|YP_002646028.1| putative methyltransferase [Mycobacterium bovis BCG str. Tokyo
          172]
 gi|253797942|ref|YP_003030943.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 1435]
 gi|254365603|ref|ZP_04981648.1| hypothetical methyltransferase (methylase) [Mycobacterium
          tuberculosis str. Haarlem]
 gi|254552043|ref|ZP_05142490.1| methyltransferase/methylase [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260187989|ref|ZP_05765463.1| methyltransferase/methylase [Mycobacterium tuberculosis CPHL_A]
 gi|260202107|ref|ZP_05769598.1| methyltransferase/methylase [Mycobacterium tuberculosis T46]
 gi|260206289|ref|ZP_05773780.1| methyltransferase/methylase [Mycobacterium tuberculosis K85]
 gi|289444529|ref|ZP_06434273.1| RsmD family RNA methyltransferase [Mycobacterium tuberculosis
          T46]
 gi|289448637|ref|ZP_06438381.1| methyltransferase/methylase [Mycobacterium tuberculosis CPHL_A]
 gi|289571163|ref|ZP_06451390.1| methyltransferase/methylase [Mycobacterium tuberculosis T17]
 gi|289575673|ref|ZP_06455900.1| methyltransferase/methylase [Mycobacterium tuberculosis K85]
 gi|289746764|ref|ZP_06506142.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289751642|ref|ZP_06511020.1| methyltransferase/methylase [Mycobacterium tuberculosis T92]
 gi|289755082|ref|ZP_06514460.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289759091|ref|ZP_06518469.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289763145|ref|ZP_06522523.1| methyltransferase (methylase) [Mycobacterium tuberculosis GM
          1503]
 gi|294993948|ref|ZP_06799639.1| putative methyltransferase [Mycobacterium tuberculosis 210]
 gi|297635589|ref|ZP_06953369.1| putative methyltransferase [Mycobacterium tuberculosis KZN 4207]
 gi|297732587|ref|ZP_06961705.1| putative methyltransferase [Mycobacterium tuberculosis KZN R506]
 gi|298526436|ref|ZP_07013845.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|306777257|ref|ZP_07415594.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu001]
 gi|306781168|ref|ZP_07419505.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu002]
 gi|306785806|ref|ZP_07424128.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu003]
 gi|306789845|ref|ZP_07428167.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu004]
 gi|306794658|ref|ZP_07432960.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu005]
 gi|306798902|ref|ZP_07437204.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu006]
 gi|306804747|ref|ZP_07441415.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu008]
 gi|306808940|ref|ZP_07445608.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu007]
 gi|306969038|ref|ZP_07481699.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu009]
 gi|306973375|ref|ZP_07486036.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu010]
 gi|307081083|ref|ZP_07490253.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu011]
 gi|307085685|ref|ZP_07494798.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu012]
 gi|313659919|ref|ZP_07816799.1| putative methyltransferase [Mycobacterium tuberculosis KZN V2475]
 gi|1694865|emb|CAB05411.1| POSSIBLE METHYLTRANSFERASE (METHYLASE) [Mycobacterium
          tuberculosis H37Rv]
 gi|13882828|gb|AAK47370.1| conserved hypothetical protein [Mycobacterium tuberculosis
          CDC1551]
 gi|31619737|emb|CAD96677.1| POSSIBLE METHYLTRANSFERASE (METHYLASE) [Mycobacterium bovis
          AF2122/97]
 gi|121494495|emb|CAL72976.1| Possible methyltransferase (methylase) [Mycobacterium bovis BCG
          str. Pasteur 1173P2]
 gi|134151116|gb|EBA43161.1| hypothetical methyltransferase (methylase) [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148506966|gb|ABQ74775.1| putative methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148722683|gb|ABR07308.1| hypothetical methyltransferase [Mycobacterium tuberculosis F11]
 gi|224774454|dbj|BAH27260.1| putative methyltransferase [Mycobacterium bovis BCG str. Tokyo
          172]
 gi|253319445|gb|ACT24048.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 1435]
 gi|289417448|gb|EFD14688.1| RsmD family RNA methyltransferase [Mycobacterium tuberculosis
          T46]
 gi|289421595|gb|EFD18796.1| methyltransferase/methylase [Mycobacterium tuberculosis CPHL_A]
 gi|289540104|gb|EFD44682.1| methyltransferase/methylase [Mycobacterium tuberculosis K85]
 gi|289544917|gb|EFD48565.1| methyltransferase/methylase [Mycobacterium tuberculosis T17]
 gi|289687292|gb|EFD54780.1| methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289692229|gb|EFD59658.1| methyltransferase/methylase [Mycobacterium tuberculosis T92]
 gi|289695669|gb|EFD63098.1| methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289710651|gb|EFD74667.1| methyltransferase (methylase) [Mycobacterium tuberculosis GM
          1503]
 gi|289714655|gb|EFD78667.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298496230|gb|EFI31524.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|308214403|gb|EFO73802.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu001]
 gi|308326059|gb|EFP14910.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu002]
 gi|308329582|gb|EFP18433.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu003]
 gi|308333728|gb|EFP22579.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu004]
 gi|308337071|gb|EFP25922.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu005]
 gi|308340884|gb|EFP29735.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu006]
 gi|308344720|gb|EFP33571.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu007]
 gi|308348701|gb|EFP37552.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu008]
 gi|308353396|gb|EFP42247.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu009]
 gi|308357272|gb|EFP46123.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu010]
 gi|308361285|gb|EFP50136.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu011]
 gi|308364802|gb|EFP53653.1| methyltransferase/methylase [Mycobacterium tuberculosis SUMu012]
 gi|323718439|gb|EGB27612.1| methyltransferase/methylase [Mycobacterium tuberculosis CDC1551A]
 gi|328457717|gb|AEB03140.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 4207]
          Length = 188

 Score = 36.3 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
          I  +   L G+ V+++ AG G L    L+ GA  V+ +E DQ+   ++  
Sbjct: 35 IVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIAR 84


>gi|332289604|ref|YP_004420456.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- benzoquinol
          methylase [Gallibacterium anatis UMN179]
 gi|330432500|gb|AEC17559.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- benzoquinol
          methylase [Gallibacterium anatis UMN179]
          Length = 83

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 17 YKIIPKK------YMGQNFLLDLN--ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
          + + P+K       M Q+ L++      + +  +  +    TV++IG GPG L   L   
Sbjct: 23 HSLSPQKWDNKAQKMAQH-LIEKRSHYTETLLSAINAQPDETVLDIGCGPGTLALPLAQQ 81

Query: 69 G 69
           
Sbjct: 82 C 82


>gi|293553328|ref|ZP_06673964.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1039]
 gi|291602552|gb|EFF32768.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1039]
          Length = 279

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 51  VIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           VI+IG G G +   L        V  ++  ++   + K+ + +   ++     D L    
Sbjct: 116 VIDIGTGTGAIAISLKAARRNWHVSAVDLSEEALEVAKENAQKEGTKISFYHGDTLGPVM 175

Query: 110 EKFFNISSPIRIIANLPY 127
           ++ F++     II+N PY
Sbjct: 176 DQQFDV-----IISNPPY 188


>gi|302867233|ref|YP_003835870.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302570092|gb|ADL46294.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 254

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
          + A ++G   G   +++G G G LT  L + LG   V  ++    F    +        R
Sbjct: 24 RFAGAAGVTRGQRALDVGCGTGALTAELVVRLGPEAVSAVDPSAPFVEAARARLPGVEIR 83


>gi|290954674|ref|YP_003485856.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces scabiei
           87.22]
 gi|260644200|emb|CBG67276.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Streptomyces scabiei 87.22]
          Length = 449

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 4/108 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           L  +       +G  ++++G G G+L          +V+ +    +   + ++   ++  
Sbjct: 199 LDLVCRKLALREGQRLLDVGCGWGSLAMHAAERYGVQVVGVTISVEQAALARERVAAAGL 258

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRI--IANLPYNIGTRLLFNWIS 139
            + +EI   D  ++D   F  ISS      +    Y     +L   + 
Sbjct: 259 EHLVEIRVQDYRQIDDSPFDAISSIGMAEHVGKKRYRAYADILHRLLK 306


>gi|291612482|ref|YP_003522639.1| sun protein [Sideroxydans lithotrophicus ES-1]
 gi|291582594|gb|ADE10252.1| sun protein [Sideroxydans lithotrophicus ES-1]
          Length = 424

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
               DG+ V++  A PG  T  LL L   +++ ++KD+     +++   +     +++  
Sbjct: 238 LDVHDGMRVLDACAAPGGKTAHLLELADIELLAVDKDELRLGRVRENLQRLKLDAQVVCG 297

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIG-----TRLLFNWISADTWPPFWESLTLLFQKE 157
           DA     E +++  +  RI+A++P +          +  W+        +         E
Sbjct: 298 DA--ASPEDWWDGKAFERILADVPCSASGVVRRHPDI-KWLRRQEDIANFAVQQAQV-LE 353

Query: 158 VGERITAQKNSPHYGRLSVLT 178
               + A      Y   SV  
Sbjct: 354 SLWSLLASDGKLLYATCSVFA 374


>gi|228915414|ref|ZP_04079007.1| hypothetical protein bthur0012_26340 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228844357|gb|EEM89415.1| hypothetical protein bthur0012_26340 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 247

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105
              T++E+GAG G   + +  L  +   V     +  P L   + +H  N + I   D  
Sbjct: 41  PFQTMLELGAGNGGFARAMSNLDIKMTTV-----ELVPELVMFAKEHSTNDIVIHCADFY 95

Query: 106 KVDFEKFFNI 115
           K++FE+ F++
Sbjct: 96  KINFEEKFDV 105


>gi|222095008|ref|YP_002529068.1| radc, ribosomal RNA adenine dimethylase [Bacillus cereus Q1]
 gi|221239066|gb|ACM11776.1| rADc, Ribosomal RNA adenine dimethylase [Bacillus cereus Q1]
          Length = 251

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 14/133 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  +  ++   +   V +IG+G G  ++ LL  G   VI +E +     + +   +Q+P 
Sbjct: 26  IDYLLSANELNENRIVADIGSGTGIFSRQLLESG-LHVIGVEPNDDMRKMAEQSLNQYP- 83

Query: 96  RLEIIQDDA----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--------WISADTW 143
           R + I+  A    LK +      ++          + I  + +          W S D  
Sbjct: 84  RFQSIKATAENTTLKENSVDLVTVAQAFHWFDKEAFKIECQRILKQKAHVALVWNSRDVT 143

Query: 144 PPFWESLTLLFQK 156
            P  +    + QK
Sbjct: 144 SPLIQENAEICQK 156


>gi|212692341|ref|ZP_03300469.1| hypothetical protein BACDOR_01837 [Bacteroides dorei DSM 17855]
 gi|212665218|gb|EEB25790.1| hypothetical protein BACDOR_01837 [Bacteroides dorei DSM 17855]
          Length = 1000

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 85/273 (31%), Gaps = 44/273 (16%)

Query: 21  PKKYM--GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            KK    GQ F     + + + +         ++++  G GN    L           + 
Sbjct: 64  AKKEFEMGQ-FFTPHEVCRDMVDVLSPTSSEMILDMCCGMGNFFNHLP--NQHNAYGFDI 120

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL----- 133
           D +   + + +         I + D  +   E+ F+      II N P+N+         
Sbjct: 121 DSKAVAVARYLYPDA----HIEKCDIQQYHSEQRFD-----AIIGNPPFNLKFDFRISQE 171

Query: 134 -----LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
                 ++ ++   +           Q E  E+    + +  +   S +   R      F
Sbjct: 172 YYIDKAYHLLNPAGFLMIIVP-VSFMQNEFWEKSRVGRVNEDF---SFIGQTRLAP-HAF 226

Query: 189 D-ISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA-FGKRRKTLRQSLKRLGG 246
             +    F       + ++ F+     I     + ++    A   +R K  R+   RL  
Sbjct: 227 TSVGVDNF------NTKIMVFLRRSQHIEMNPYNAEEFVSMAELKERVKKAREMKHRLRL 280

Query: 247 ENLLHQAGIETNLRAENLSIEDFC-RITNILTD 278
           + +     I+     E L  E F  ++   + +
Sbjct: 281 DLMRETNRIDK----EEL--EHFEYKLAKYMYE 307


>gi|328866612|gb|EGG14995.1| protein arginine methyltransferase [Dictyostelium fasciculatum]
          Length = 500

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-KDQQFFPILKDISSQHPNRL 97
           I  S        V++IG G G L+      GA+KV  +E  D  F   L    +   + +
Sbjct: 141 IMGSKELFKDKVVMDIGCGTGILSCFCAIAGAKKVYAVEASDMAFNAELIVNRNNLQDVV 200

Query: 98  EIIQDDALKVDFEKFFNI 115
            I++       F +F +I
Sbjct: 201 TIVKGKLEHTTFPEFVDI 218


>gi|321441965|gb|ADW85397.1| arg methyltransferase [Alucita sp. JCR-2011]
          Length = 244

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLDDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|312143239|ref|YP_003994685.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus']
 gi|311903890|gb|ADQ14331.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus']
          Length = 289

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 15/116 (12%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQ 101
           L+  +++E+ AG GN+T+ L+ L   +++  ++         ++  SQ+     +LE +Q
Sbjct: 38  LEVESILELAAGTGNMTEELINLPKIKEIKALDLSSAMLERAENKLSQYELKNLKLEFVQ 97

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            D     F   F++   + +  +  Y          ++       +     + QK+
Sbjct: 98  ADMTDFKFPGNFDL--ILSVFDSYNY---------LLTEKDLKESFSCAAEVLQKD 142


>gi|306832593|ref|ZP_07465732.1| adenine-specific methyltransferase [Streptococcus bovis ATCC
           700338]
 gi|304425201|gb|EFM28328.1| adenine-specific methyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 323

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 11/80 (13%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPIL 86
           FL+  N+           D I ++EIG+G GNL Q  L   ++++  + IE D     + 
Sbjct: 100 FLI-ENLTD--------SDKIDLLEIGSGTGNLAQTFLNNSSKELNYLGIEVDDLLIDLS 150

Query: 87  KDISSQHPNRLEIIQDDALK 106
             I+    +    IQ+DA++
Sbjct: 151 ASIAEVMDSDARFIQEDAVR 170


>gi|284008661|emb|CBA75297.1| ribosomal protein L11 methyltransferase [Arsenophonus nasoniae]
          Length = 295

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           L   TVI+ G G G L    L LGA+K I I+ D Q   IL   ++   N +
Sbjct: 157 LKDKTVIDFGCGSGILAIAALKLGAKKAIGIDIDPQ--AILASHNNADQNNV 206


>gi|251793183|ref|YP_003007911.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534578|gb|ACS97824.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 294

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L G TVI+ G G G L    L LGA+  + I+ D Q     ++ + Q+   +RL++   
Sbjct: 156 DLKGKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRNNAEQNGVADRLQLFLS 215

Query: 103 D 103
           D
Sbjct: 216 D 216


>gi|258652576|ref|YP_003201732.1| type 11 methyltransferase [Nakamurella multipartita DSM 44233]
 gi|258555801|gb|ACV78743.1| Methyltransferase type 11 [Nakamurella multipartita DSM 44233]
          Length = 239

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 3/111 (2%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA--LKVDF 109
           +EIGAG G L+      G  +++++E +  F   L+D   + P  + I+  DA  L    
Sbjct: 45  LEIGAGSG-LSVPHYPAGLDELVLLEPNPAFRTQLRDRVRELPVTVSILDGDARQLPFPD 103

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
             F  +++ +   +    +   R +   +       F E +     + V +
Sbjct: 104 STFDTVAASLVFCSVDDPDRALREVHRVLRPGGRFLFHEHVRGGPVRGVVQ 154


>gi|225681933|gb|EEH20217.1| arginine methyltransferase RmtB [Paracoccidioides brasiliensis
           Pb03]
          Length = 560

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G      V+++G G G L+      GA+ VI ++         ++I   + N       D
Sbjct: 254 GLFKDKVVLDVGCGTGILSMFCAKAGAKMVIAVDN-SDIIDRAREIV--YDNGF----GD 306

Query: 104 ALKVDFEKFFNISSPIRIIA 123
            +K    K   +  P+  + 
Sbjct: 307 VIKCIRGKIEEVQLPVPQVD 326


>gi|133904226|ref|NP_496501.2| hypothetical protein F13D12.9 [Caenorhabditis elegans]
 gi|112982359|emb|CAA22134.2| C. elegans protein F13D12.9, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|112982591|emb|CAA88952.2| C. elegans protein F13D12.9, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 452

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGN 60
           + ++ +         V+EIG G G 
Sbjct: 225 IDRLIDQLELKADDHVLEIGCGWGA 249


>gi|78063652|ref|YP_373560.1| trans-aconitate 2-methyltransferase [Burkholderia sp. 383]
 gi|77971537|gb|ABB12916.1| Trans-aconitate 2-methyltransferase [Burkholderia sp. 383]
          Length = 261

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 32  DLNI--LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           D     ++ +  +  +    T I+IG GPGN T+ L+       V  I+         + 
Sbjct: 17  DERTRPIRDLLAAVPNTPIRTAIDIGCGPGNSTEALIARAPHATVHGIDASADMIDAARK 76

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNI 115
                  R +++  D    D    +++
Sbjct: 77  RLPDL--RFDVV--DISTWDDPGGYDL 99


>gi|49475863|ref|YP_033904.1| S-adenosyl-methyltransferase MraW [Bartonella henselae str.
           Houston-1]
 gi|54036186|sp|Q6G2P7|RSMH_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49238671|emb|CAF27917.1| hypothetical protein BH11320 [Bartonella henselae str. Houston-1]
          Length = 346

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           G G  T+ LL  GA +VI +++D       + +  +   RL ++Q +  ++D 
Sbjct: 51  GAGGYTRALLNAGA-QVIALDRDPHAIREGQSLVDEFFPRLRLVQGNFSQLDC 102


>gi|268533642|ref|XP_002631950.1| Hypothetical protein CBG10211 [Caenorhabditis briggsae]
 gi|187031226|emb|CAP29762.1| hypothetical protein CBG_10211 [Caenorhabditis briggsae AF16]
          Length = 542

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQ---QFF-------PI 85
           + I +     +    I++G+G G L T          V  IE +Q    F          
Sbjct: 330 QSILDQLKIKEDDIFIDVGSGIGQLVTFAAAYSKCANVSGIEIEQVPADFASENGIQFER 389

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           L +   + P   ++ + D  +    +F    + +    N  ++
Sbjct: 390 LMNHFGEQPRPFKLEKGDFKENKHAEFLKNEAKVIFCNNFAFD 432


>gi|103485532|ref|YP_615093.1| ArsR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98975609|gb|ABF51760.1| transcriptional regulator, ArsR family [Sphingopyxis alaskensis
           RB2256]
          Length = 328

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 30  LLDLNILKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
           +   ++ +   E++      +     +++IG G G +   +    AR++  +++  +   
Sbjct: 128 IRSRHVAESEVEAAMLAMMHNRRLGHLLDIGTGTGRM-AEIFAPTARRITALDRSPEMLR 186

Query: 85  ILKDISSQHPNRLEIIQDDALKVD 108
           I +    + P  +++IQ D L++ 
Sbjct: 187 IARAKLERQPVPVDLIQGDFLELP 210


>gi|331701049|ref|YP_004398008.1| type 11 methyltransferase [Lactobacillus buchneri NRRL B-30929]
 gi|329128392|gb|AEB72945.1| Methyltransferase type 11 [Lactobacillus buchneri NRRL B-30929]
          Length = 282

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           +  +  + Q  L D  I+  IA   G     T++++G G G     LL L   +   I  
Sbjct: 67  LQARHKILQAGLFDP-IVDAIATYLGPEP-ETILDVGCGEGTPLARLLALRDGQDTAIGF 124

Query: 79  D 79
           D
Sbjct: 125 D 125


>gi|328951529|ref|YP_004368864.1| Methyltransferase type 11 [Marinithermus hydrothermalis DSM 14884]
 gi|328451853|gb|AEB12754.1| Methyltransferase type 11 [Marinithermus hydrothermalis DSM 14884]
          Length = 264

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 38  KIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           KIA +              +E+G G G +   ++  G R    ++       +++   + 
Sbjct: 25  KIATAITAPVEKIFRDPHFLEVGVGTGRIAVPIIARGYR-FTGVDLSPAMLEVMRYKIAG 83

Query: 93  HPNRLEIIQDDALKVDFEK 111
              ++ +++ D  ++ FEK
Sbjct: 84  VARKVRLVEADVRELPFEK 102


>gi|325091171|gb|EGC44481.1| polyketide synthase [Ajellomyces capsulatus H88]
          Length = 2335

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 30   LLDLNIL----KK---IAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            L DL ++     +   I   + +   + ++EIGAG G  T  LL 
Sbjct: 1247 LTDLYVVMDSVDRSQFIRHLAHTKPNLRILEIGAGTGASTAGLLK 1291


>gi|321442009|gb|ADW85419.1| arg methyltransferase [Melittia cucurbitae]
          Length = 244

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLDDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|240275334|gb|EER38848.1| polyketide synthase [Ajellomyces capsulatus H143]
          Length = 2378

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 30   LLDLNIL----KK---IAESSGSLDGITVIEIGAGPGNLTQMLLT 67
            L DL ++     +   I   + +   + ++EIGAG G  T  LL 
Sbjct: 1238 LTDLYVVMDSVDRSQFIRHLAHTKPNLRILEIGAGTGASTAGLLK 1282


>gi|262198038|ref|YP_003269247.1| methyltransferase type 11 [Haliangium ochraceum DSM 14365]
 gi|262081385|gb|ACY17354.1| Methyltransferase type 11 [Haliangium ochraceum DSM 14365]
          Length = 218

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 24/45 (53%)

Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
             +G +V+++GAG G  T  +L+    +V+ I+   +   I ++
Sbjct: 48 RLPEGASVLDLGAGTGAPTAAMLSAAGHRVVGIDISPEMVRIARE 92


>gi|126465622|ref|YP_001040731.1| protein-L-isoaspartate O-methyltransferase [Staphylothermus marinus
           F1]
 gi|209573237|sp|A3DMG3|PIMT_STAMF RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|126014445|gb|ABN69823.1| protein-L-isoaspartate O-methyltransferase [Staphylothermus marinus
           F1]
          Length = 225

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-------KVIVIEKDQQFFPILKDISSQ- 92
           E      G  V+EIG G G    +L  + A+        V  +E+  +     K    + 
Sbjct: 73  EELDPEPGNIVLEIGTGSGYQAAVLAEIVAKQDPNRRGHVYTVERIPELAEFAKKNLERT 132

Query: 93  -HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +   + +I  D  K   EK       I + A  P
Sbjct: 133 GYIEYVTVIVGDGTKGYPEKA--PYDRIIVTAAAP 165


>gi|152998066|ref|YP_001342901.1| cyclopropane-fatty-acyl-phospholipid synthase [Marinomonas sp.
           MWYL1]
 gi|150838990|gb|ABR72966.1| Cyclopropane-fatty-acyl-phospholipid synthase [Marinomonas sp.
           MWYL1]
          Length = 422

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SS 91
           N L +I +     +   ++EIG G G +          +V      ++ +   K    + 
Sbjct: 183 NKLDRICQKLQLSEDDHLLEIGTGWGGMAIHAAKHYGCQVTTTTISKEQYEFAKARVEAE 242

Query: 92  QHPNRLEIIQDD 103
              +++ ++ +D
Sbjct: 243 GLQDKITLLLED 254


>gi|91226789|ref|ZP_01261442.1| hypothetical protein V12G01_13469 [Vibrio alginolyticus 12G01]
 gi|91188920|gb|EAS75204.1| hypothetical protein V12G01_13469 [Vibrio alginolyticus 12G01]
          Length = 239

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 47  DGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
           +   +++IG G G L  M        ++  ++ +       +   +Q P  +R+ +   D
Sbjct: 42  NDAKILDIGTGTGLLALMCAQRFTEAQITAVDIELTAVAAAQKNMAQSPWSDRVSVHHTD 101

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIG 130
            L       F      RII N PY   
Sbjct: 102 ILHFTPTHPFQ-----RIICNPPYFNS 123


>gi|34499833|ref|NP_904048.1| phosphatidylethanolamine N-methyltransferase [Chromobacterium
           violaceum ATCC 12472]
 gi|34105683|gb|AAQ62037.1| probable phosphatidylethanolamine N-methyltransferase
           [Chromobacterium violaceum ATCC 12472]
          Length = 205

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           ++            V+ +GAG G     L+    R+V  I+        L++ + +    
Sbjct: 33  RRAIGLLNPQPDERVLLVGAGTGLDLDFLVR--CRRVAAIDIAPAMLARLRERAGKLGME 90

Query: 97  LEIIQDDALKVDFEK 111
           ++    D  ++DF  
Sbjct: 91  VDARVMDGQRLDFPD 105


>gi|56707825|ref|YP_169721.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670296|ref|YP_666853.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|81597688|sp|Q5NGX1|RUMA_FRATT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122970996|sp|Q14IC3|RUMA_FRAT1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|56604317|emb|CAG45338.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320629|emb|CAL08721.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|282159001|gb|ADA78392.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 449

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++K+  E     +  ++I++  G GN T  + +  A+ VI +E +       K+ +
Sbjct: 285 INKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI-SQHAKTVIGVEGEPTMVKRAKETA 343


>gi|42526640|ref|NP_971738.1| methyltransferase, putative [Treponema denticola ATCC 35405]
 gi|50401460|sp|Q73NM2|TRMB_TREDE RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|41816833|gb|AAS11619.1| methyltransferase, putative [Treponema denticola ATCC 35405]
          Length = 235

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFP----ILKDISSQHPNRLEII 100
            D   +IEIG G G  T  +      K  + IE    F      +L +I  +  N L II
Sbjct: 61  NDNPVIIEIGFGMGTATAQIAEDNPDKNYLGIEV---FKAGVGKLLGEIEEKKLNNLRII 117

Query: 101 QDDALKVDFEKFFNIS 116
           + DA++V      N S
Sbjct: 118 EHDAIEVLENMINNES 133


>gi|86142851|ref|ZP_01061290.1| putative protoporphyrinogen oxidase [Leeuwenhoekiella blandensis
           MED217]
 gi|85830883|gb|EAQ49341.1| putative protoporphyrinogen oxidase [Leeuwenhoekiella blandensis
           MED217]
          Length = 280

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 50  TVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           T+++IG G G +   L   L   KV  I+  +    I +  +S +   ++ I+ D L  D
Sbjct: 115 TILDIGTGSGAIAVSLAKLLPEAKVTAIDVSEDALKIAEANASSNAVNVQFIKQDIL--D 172

Query: 109 FEKFFNISSPIRIIANLPY 127
            +          I++N PY
Sbjct: 173 CQALDRSYD--VIVSNPPY 189


>gi|326797753|ref|YP_004315572.1| protein-L-isoaspartate O-methyltransferase [Sphingobacterium sp.
           21]
 gi|326548517|gb|ADZ76902.1| Protein-L-isoaspartate O-methyltransferase [Sphingobacterium sp.
           21]
          Length = 218

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E      G  V+EIG G G  T +LL LGA +V  IE+    +     +      +    
Sbjct: 78  ELLHIRRGDKVLEIGTGSGYQTCILLELGA-EVFTIERQTNLYNRTIKVLPYMGYQAHFF 136

Query: 101 QDD 103
             D
Sbjct: 137 LGD 139


>gi|325282354|ref|YP_004254895.1| Methyltransferase type 12 [Deinococcus proteolyticus MRP]
 gi|324314163|gb|ADY25278.1| Methyltransferase type 12 [Deinococcus proteolyticus MRP]
          Length = 235

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +S     G  V+++GAG   L   LL  G  KV V++   +   + ++      + +  
Sbjct: 63  IDSLNLPAGERVLDVGAGASALPDGLLERG-LKVQVLDLSARALELTRERLGARADAVTW 121

Query: 100 IQDDAL 105
              + L
Sbjct: 122 QVGNVL 127


>gi|321441983|gb|ADW85406.1| arg methyltransferase [Cyclotorna sp. JCR-2011]
          Length = 244

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLDDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|313682760|ref|YP_004060498.1| methyltransferase type 12 [Sulfuricurvum kujiense DSM 16994]
 gi|313155620|gb|ADR34298.1| Methyltransferase type 12 [Sulfuricurvum kujiense DSM 16994]
          Length = 250

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPIL 86
          NF     +++ I          T+++IG G G  T+ L    GA K   +E  +      
Sbjct: 28 NF-----VIRHIHHDLALTSDDTLVDIGGGTGTFTRRLKDESGAIKAYCVEPSRPMCDEA 82

Query: 87 KDISS 91
          + + +
Sbjct: 83 EKLEN 87


>gi|300114224|ref|YP_003760799.1| protein-l-isoaspartate O-methyltransferase [Nitrosococcus watsonii
           C-113]
 gi|299540161|gb|ADJ28478.1| protein-L-isoaspartate O-methyltransferase [Nitrosococcus watsonii
           C-113]
          Length = 219

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + +         ++E+G G G     +L+   +KV  IE  ++     +    +
Sbjct: 69  PYIVALMTDLLDPKPEDIILEVGTGSGY-QAAILSRLVKKVYTIEVIEELAQQAEARLER 127

Query: 93  H-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
                +E+   D      E+       I + A  P +I   L+               L 
Sbjct: 128 LGYTNVEVQTADGYFGWPEQA--PFDGIMVTAAAP-SIPEPLIEQL---KPEARLVLPLG 181

Query: 152 LLFQKEV 158
             FQ+E+
Sbjct: 182 AGFQQEL 188


>gi|318062502|ref|ZP_07981223.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces sp.
           SA3_actG]
 gi|318079031|ref|ZP_07986363.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces sp.
           SA3_actF]
          Length = 434

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L  IA       G  ++++G G G++          +V+ +   ++     +   ++   
Sbjct: 190 LDLIATKLDLRPGQRLLDVGCGWGSMALHAAREYGVEVVGVTLSREQAAYARKRVAEEGL 249

Query: 94  PNRLEIIQDDALKVDFEKFFNISS 117
            +++EI   D   V    F  ISS
Sbjct: 250 GDKVEIRVQDYRDVRDGPFDAISS 273


>gi|294012054|ref|YP_003545514.1| phospholipid N-methyltransferase [Sphingobium japonicum UT26S]
 gi|292675384|dbj|BAI96902.1| phospholipid N-methyltransferase [Sphingobium japonicum UT26S]
          Length = 209

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
              + + + E     DG  VIE+G G G  T+ +L  G    K+ V+E +  F   L+  
Sbjct: 46  SRYLARLMVEHIVPDDG-RVIELGGGTGVFTRAILGTGLPPEKLEVVEINPAFARGLRRH 104

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
                  + +++  A  V             +I+ LP
Sbjct: 105 FPH----VSVLETPAQIVSTATAGEAGEYQSVISGLP 137


>gi|154151899|ref|YP_001405517.1| methyltransferase type 12 [Candidatus Methanoregula boonei 6A8]
 gi|154000451|gb|ABS56874.1| Methyltransferase type 12 [Methanoregula boonei 6A8]
          Length = 319

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPNRLE 98
           A +     G  V++IG GPG     L   G R V  +E        L +    ++   + 
Sbjct: 77  AAALSVPKGARVLDIGTGPGTYAVPLAARGCR-VTAVEPSPVMREALAENMRERNAEDIR 135

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           +I     + +      +  P  ++    Y++    +   ++
Sbjct: 136 VIPK---RWEDITVQELGEPFDVV-IASYSLTMMDIGKALA 172


>gi|219849991|ref|YP_002464424.1| methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
 gi|219544250|gb|ACL25988.1| Methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
          Length = 261

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + I   +G   G  V+EIG G G +   +   GAR VI I+         ++ + Q    
Sbjct: 30  QAIVAQTGI--GAKVLEIGIGSGRIALPVAAAGAR-VIGIDVSTGMLTTARERAQQADVP 86

Query: 97  LEIIQDDA 104
           L +I+ DA
Sbjct: 87  LWLIRADA 94


>gi|86160709|ref|YP_467494.1| glycosyl transferase family protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777220|gb|ABC84057.1| glycosyl transferase, family 2 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 531

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           +A+      G  V+EIG+G GNLT+ L+       +  + +  +   L+ ++   P  L+
Sbjct: 285 MADVIRPFCGQRVLEIGSGTGNLTRRLVPRNTY--VASDVNPLYLQTLRGLTLDRP-YLD 341

Query: 99  IIQDDALK 106
           +   D  K
Sbjct: 342 VTLTDVTK 349


>gi|37678295|ref|NP_932904.1| N6-adenine-specific methylase [Vibrio vulnificus YJ016]
 gi|320154973|ref|YP_004187352.1| methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|326423802|ref|NP_760098.2| ribosomal RNA small subunit methyltransferase D [Vibrio vulnificus
           CMCP6]
 gi|37197034|dbj|BAC92875.1| N6-adenine-specific methylase [Vibrio vulnificus YJ016]
 gi|319930285|gb|ADV85149.1| methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|319999170|gb|AAO09625.2| Ribosomal RNA small subunit methyltransferase D [Vibrio vulnificus
           CMCP6]
          Length = 197

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 3/117 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQ 101
           +  +     +++ AG G L     +  A +V ++E + + F  L+   +    N +++IQ
Sbjct: 55  AQDIPRARCLDLFAGSGGLGFEAASRQAEQVTMLELNPKAFAQLQQNVTALKANNIKVIQ 114

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
            DAL+   ++       +  I               +  + W      + +  +KE+
Sbjct: 115 GDALQFLKQQ--GTPHHVVFIDPPFRQGLLAEAVTLLEQNGWLAEDAMIYIETEKEL 169


>gi|321442017|gb|ADW85423.1| arg methyltransferase [Prionoxystus robiniae]
          Length = 244

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
               G TV++IG G G L+      GA KVI +E         + I     NRL    DD
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAVEC-SNIVDYARKIVEA--NRL----DD 71

Query: 104 ALKVDFEKFFNISSPIRIIA 123
            +++   K   +  P+  + 
Sbjct: 72  IIEIVKGKVEEVELPVDKVD 91


>gi|313201410|ref|YP_004040068.1| ubiquinone biosynthesis o-methyltransferase [Methylovorus sp.
           MP688]
 gi|312440726|gb|ADQ84832.1| ubiquinone biosynthesis O-methyltransferase [Methylovorus sp.
           MP688]
          Length = 239

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 30  LLDLNILK-KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF--FPIL 86
           L D+N L+ ++ +    L G  V+++G G G L++ +   GA  V  I+  ++      L
Sbjct: 38  LHDINPLRLQLIDELAGLQGKRVVDVGCGGGILSESMSARGAD-VTGIDLGEKALKVAEL 96

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
             + S       +I+ +AL  +    F++ + + ++ ++P
Sbjct: 97  HRLESGASVNYRLIEVEALAQEQPGSFDVVTCMEMLEHVP 136


>gi|308187921|ref|YP_003932052.1| L-isoaspartate protein carboxylmethyltransferase type II [Pantoea
           vagans C9-1]
 gi|308058431|gb|ADO10603.1| L-isoaspartate protein carboxylmethyltransferase type II [Pantoea
           vagans C9-1]
          Length = 208

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++    G      V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTALLGLNPHSRVLEIGTGSGYQTAILAHL-VDHVYSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNWISAD 141
              +L++        D  + +    P    I+   P  I   L+       
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWPSRGPFDAIIVTAAPPEIPIALIAQLAEGG 166


>gi|298705468|emb|CBJ28743.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 379

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +     DG  ++++G G G LT  +   G R V+ I+            
Sbjct: 75  DLLAPRDGERILDVGCGDGVLTAEIKARGCR-VVGIDFAPDMVAAAARK 122


>gi|294615326|ref|ZP_06695201.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1636]
 gi|294617195|ref|ZP_06696847.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1679]
 gi|291591829|gb|EFF23463.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1636]
 gi|291596540|gb|EFF27781.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1679]
          Length = 279

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 51  VIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           VI+IG G G +   L        V  ++  ++   + K+ + +   ++     D L    
Sbjct: 116 VIDIGTGTGAIAISLKAARRNWHVSAVDLSEEALEVAKENAQKEGTKISFYHGDTLGPVM 175

Query: 110 EKFFNISSPIRIIANLPY 127
           ++ F++     II+N PY
Sbjct: 176 DQQFDV-----IISNPPY 188


>gi|239945768|ref|ZP_04697705.1| putative cyclopropane fatty acid synthase [Streptomyces roseosporus
           NRRL 15998]
 gi|239992239|ref|ZP_04712903.1| putative cyclopropane fatty acid synthase [Streptomyces roseosporus
           NRRL 11379]
 gi|291449225|ref|ZP_06588615.1| cyclopropane fatty acid synthase [Streptomyces roseosporus NRRL
           15998]
 gi|291352172|gb|EFE79076.1| cyclopropane fatty acid synthase [Streptomyces roseosporus NRRL
           15998]
          Length = 432

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP- 94
           L  I    G   G  ++++G G G++    +     + + +   ++   + +   ++   
Sbjct: 183 LDLICRKLGLKPGQRLLDVGCGWGSMVLHAVQHYGVEAVGVTISEEQAALARKRLAEAGC 242

Query: 95  -NRLEIIQDDALKVDFEKFFNISSPIRI--IANLPYNIGTRLLFNWIS 139
            +R EI   D  ++D   F  ISS      + +  Y    R+L + + 
Sbjct: 243 TDRAEIRVQDYREIDDGPFDAISSIGMAEHVGSAQYRAYARILHSLLK 290


>gi|294941736|ref|XP_002783214.1| protein arginine methyltransferase, putative [Perkinsus marinus
          ATCC 50983]
 gi|239895629|gb|EER15010.1| protein arginine methyltransferase, putative [Perkinsus marinus
          ATCC 50983]
          Length = 340

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
          + I +++    G TV+++G+G G L+      GA  V  +E
Sbjct: 39 RAILDNAHLFQGKTVLDVGSGTGILSMFAAQAGAEHVYGVE 79


>gi|294871818|ref|XP_002766057.1| protein arginine methyltransferase, putative [Perkinsus marinus
          ATCC 50983]
 gi|239866622|gb|EEQ98774.1| protein arginine methyltransferase, putative [Perkinsus marinus
          ATCC 50983]
          Length = 340

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
          + I +++    G TV+++G+G G L+      GA  V  +E
Sbjct: 39 RAILDNAHLFQGKTVLDVGSGTGILSMFAAQAGAEHVYGVE 79


>gi|238062984|ref|ZP_04607693.1| methyltransferase type 11 [Micromonospora sp. ATCC 39149]
 gi|237884795|gb|EEP73623.1| methyltransferase type 11 [Micromonospora sp. ATCC 39149]
          Length = 296

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPI-LKDISS 91
           + +++ +  G   G  V++IG G G +      +       +  D   +      +D+++
Sbjct: 44  VARRLIDFVGLTAGQRVLDIGCGRGAVLLQAAAVVGPTGRAVGVDLAPRMVEHTARDVAA 103

Query: 92  QHPNRLEIIQDDALKVDFEK 111
           +    +E+   D   +D   
Sbjct: 104 RGLAHVEVRLADGEHLDESP 123


>gi|222148965|ref|YP_002549922.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium vitis S4]
 gi|221735951|gb|ACM36914.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium vitis S4]
          Length = 217

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           ++ E      G  V+E+G G G +T +L  L  R V+ +E+ +      +    Q   R 
Sbjct: 71  RLIERLRVKPGQRVMEVGTGSGFMTAVLARLCER-VVSVERYKTLVNDAQSRLEQLSVRN 129

Query: 98  EII-QDD 103
            II   D
Sbjct: 130 AIIRHGD 136


>gi|74318129|ref|YP_315869.1| spermidine synthase [Thiobacillus denitrificans ATCC 25259]
 gi|74057624|gb|AAZ98064.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 255

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNR--LEIIQDD 103
             V+ +G G G+L + +     +  +  +E D +     +      PN   LE+I+ D
Sbjct: 66  QAVLMVGLGGGSLAKFIRKQRPQTHITAVEIDPRVIAAARAHFELPPNDAALEVIEGD 123


>gi|321442005|gb|ADW85417.1| arg methyltransferase [Lagoa crispata]
          Length = 244

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
               G TV++IG G G L+      GA KVI +E         + I     NRL    DD
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAVEC-SNIVDYARKIVEA--NRL----DD 71

Query: 104 ALKVDFEKFFNISSPIRIIA 123
            +++   K   +  P+  + 
Sbjct: 72  IIEIVKGKVEEVELPVEKVD 91


>gi|321441977|gb|ADW85403.1| arg methyltransferase [Caloptilia bimaculatella]
          Length = 244

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G  V++IG G G L+      GA KVI IE         + I  +++  + +EI++
Sbjct: 19  HLFKGKVVLDIGCGTGILSMFAAKAGAAKVIAIEC-SNIVDYARKIIEANRLDDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|229821127|ref|YP_002882653.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
 gi|229567040|gb|ACQ80891.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
          Length = 248

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV----IEKDQQFFPILKDISS 91
           L+ +        G  V+++G G G  +  L      +V+     +E D +    L++  +
Sbjct: 38  LEDLLADVELQPGARVLDLGCGKGATSVFLARELDVEVVAFDLWVEAD-ELHATLEE--A 94

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
              +R+  +  DA  +    F +      +  +    +GT + F
Sbjct: 95  GVADRVSAVNGDARDL---PFADDEFDAVVSIDAFEYLGTDVRF 135


>gi|218440362|ref|YP_002378691.1| precorrin-6B methylase [Cyanothece sp. PCC 7424]
 gi|218173090|gb|ACK71823.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Cyanothece sp. PCC 7424]
          Length = 196

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NR 96
           I  +        + +IGAG G +   +  L    K+I +E+D++   +++    +   N 
Sbjct: 32  IISALRMKADSVIWDIGAGTGTIPVEIGLLCPNTKIIAVERDEEVSNLIRRNCDRFEVNN 91

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           +EI   +A    F++  +    + +    P     + +++++  +
Sbjct: 92  VEIYSGNA-PECFKELSSTPDRVCLEGGRPIKEILKAIWHYLKPE 135


>gi|134046833|ref|YP_001098318.1| putative RNA methylase [Methanococcus maripaludis C5]
 gi|132664458|gb|ABO36104.1| putative RNA methylase [Methanococcus maripaludis C5]
          Length = 260

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103
                 V ++G G G L  M+    A+ V  +E D       ++   ++    + +I+D+
Sbjct: 32  VKSEDIVFDLGTGSGIL-AMIAAKNAKHVYAVELDPITTEYTRENIKENDFKNITVIEDN 90

Query: 104 ALKVDFEKFFNI 115
           A    F +  ++
Sbjct: 91  AAYYPFSEKADL 102


>gi|119470381|ref|ZP_01613109.1| hypothetical protein ATW7_17718 [Alteromonadales bacterium TW-7]
 gi|119446306|gb|EAW27582.1| hypothetical protein ATW7_17718 [Alteromonadales bacterium TW-7]
          Length = 396

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           S+     + V+E  AG G+L +ML   GA +V  +E         +  + Q    ++  Q
Sbjct: 109 SALPNTKLPVLEWCAGKGHLGRMLAFNGATQVSSVELQSTLCEQGQKAALQQGLAMQFSQ 168

Query: 102 DDALKVDFEKFFNISSPIRIIANL 125
            D LK D    FN       +   
Sbjct: 169 VDVLKDDTTSLFNTQMHAVALHAC 192


>gi|159903949|ref|YP_001551293.1| putative methyltransferase for ribosomal protein L11
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889125|gb|ABX09339.1| putative methyltransferase for Ribosomal protein L11
           [Prochlorococcus marinus str. MIT 9211]
          Length = 305

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
             + +++IG G G L    L LGA++VI ++ D 
Sbjct: 160 KDLRIVDIGCGSGVLGLAALRLGAKEVIGVDIDP 193


>gi|309811074|ref|ZP_07704872.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
 gi|308435038|gb|EFP58872.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
          Length = 244

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 23/117 (19%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN---R 96
           E +G    + +++IG G G  T  L       ++I +E D     +L    S+  +   R
Sbjct: 31  EGAGFKPELPLVDIGPGSGLTTVALAEQFPDAEIIAVEPDPWMRSMLMMRISERDSLRAR 90

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN---WISADTWPPFWESL 150
             ++ +  L                   +P  IG  LLFN   ++       FW+ +
Sbjct: 91  ATVVPNSILDAW----------------MPEQIGGALLFNVIYFLGGRARLAFWDRM 131


>gi|320011827|gb|ADW06677.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 407

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
            G   G  V +IG G G L       GA  V+ ++ D          +      +++++ 
Sbjct: 254 LGPRTGDLVWDIGCGGGALAVEAARFGA-AVLAVDSDPDACARTAAAARTFQVAVQVVEG 312

Query: 103 DA 104
            A
Sbjct: 313 TA 314


>gi|240103601|ref|YP_002959910.1| protein-L-isoaspartate O-methyltransferase [Thermococcus
           gammatolerans EJ3]
 gi|239911155|gb|ACS34046.1| Protein-L-isoaspartate O-methyltransferase (pcm) [Thermococcus
           gammatolerans EJ3]
          Length = 220

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEI 99
           + +    G+ V+EIG G G    ++  L   +V  IE+  +     +    +   R + +
Sbjct: 75  QLADLKPGMNVLEIGTGSGWNAALMAELVKGEVYTIERLPELVEFARRNLERAGVRGVHV 134

Query: 100 IQDD 103
           I  D
Sbjct: 135 ILGD 138


>gi|240102130|ref|YP_002958438.1| Zinc-binding alcohol dehydrogenase [Thermococcus gammatolerans EJ3]
 gi|239909683|gb|ACS32574.1| Zinc-binding alcohol dehydrogenase [Thermococcus gammatolerans EJ3]
          Length = 357

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIE 77
           +  + +G L G +V+ IGAGP  L+ +L+    GA KVIV+E
Sbjct: 165 RAVKKAGLLPGDSVVIIGAGPIGLSVLLVARASGAGKVIVVE 206


>gi|254577099|ref|XP_002494536.1| ZYRO0A03806p [Zygosaccharomyces rouxii]
 gi|238937425|emb|CAR25603.1| ZYRO0A03806p [Zygosaccharomyces rouxii]
          Length = 342

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ--QFFPILKDISSQHP 94
             IA++        V+++G G G L+      GA+ VI ++     +    L D+ + + 
Sbjct: 42  NAIAQNKDLFKDKVVLDVGCGTGILSMFAAKYGAKHVIGVDMSSIIEMAQQLVDL-NGYG 100

Query: 95  NRLEIIQD 102
           +++ +++ 
Sbjct: 101 DKITLLRG 108


>gi|160901890|ref|YP_001567471.1| RNA methyltransferase [Petrotoga mobilis SJ95]
 gi|160359534|gb|ABX31148.1| RNA methyltransferase, TrmA family [Petrotoga mobilis SJ95]
          Length = 387

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKVDFEKFFNI 115
           G G ++ +LL   A+KV  IE  ++     K  +   + N +E +  D      ++    
Sbjct: 250 GTGTIS-LLLANKAKKVYGIEIIKEAVEAAKQNAILNNINNVEFVNKDVKDFVKQQSSTE 308

Query: 116 SSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
                ++   P       L  +I    +    
Sbjct: 309 KPDYIVVD-PPRAGLHPNLIKFIKTQQFNKII 339


>gi|268533648|ref|XP_002631953.1| Hypothetical protein CBG10214 [Caenorhabditis briggsae]
 gi|187031223|emb|CAP29759.1| hypothetical protein CBG_10214 [Caenorhabditis briggsae AF16]
          Length = 400

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEK--------DQ- 80
            ++  L+KI +  G  +    +++G+G G L T          V  IE         D+ 
Sbjct: 180 TNIETLQKILDLLGVKEDDVFMDLGSGIGQLVTFAAAYTNIAHVRGIELQQVPAGFADEN 239

Query: 81  -QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            + F  L     + P   E+   D    + E F    + I    NL ++    L+    +
Sbjct: 240 VRQFKKLMRHFGEKPRPFELKLGDFNTEEIETFLKEKATIIFCNNLAFD--PDLMIKLRA 297

Query: 140 ADTWPPFWESLTLLFQKEVGERI 162
              +      + +  + E  ++ 
Sbjct: 298 ILQFCNNGTKIVVTQKLETTKKG 320


>gi|134294955|ref|YP_001118690.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia vietnamiensis G4]
 gi|134138112|gb|ABO53855.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia vietnamiensis G4]
          Length = 218

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISS 91
             +  ++ +         V+ IGAG G L   L    A+ V  ++ D        D + +
Sbjct: 64  PRVEARVLQELAVKKHENVLVIGAGSGYL-AALFAHRAQHVTAVDIDPTIAKFAADNLRN 122

Query: 92  QHPNRLEIIQDD 103
                 E++  D
Sbjct: 123 DGVTNAEVVLGD 134


>gi|186686408|ref|YP_001869604.1| methyltransferase type 11 [Nostoc punctiforme PCC 73102]
 gi|186468860|gb|ACC84661.1| Methyltransferase type 11 [Nostoc punctiforme PCC 73102]
          Length = 276

 Score = 36.3 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILK 87
           K+           V +IGAG G L+  +   L A KV+ ++   +   I++
Sbjct: 111 KVVSLLNLKPNDVVADIGAGTGYLSFRIAPLLTAGKVLAVDVQPEMLEIIE 161


>gi|323453938|gb|EGB09809.1| hypothetical protein AURANDRAFT_24433 [Aureococcus anophagefferens]
          Length = 407

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I        G+ V+E+GAG G L+  L T    K+   +  ++     K   +    
Sbjct: 163 LDLIGRKLKLEPGMRVLELGAGFGGLSYYLCTHFGVKMTCCDLSEEHLVYSKQHFNHENK 222

Query: 96  RLEIIQ-DDALKVDFEKFFNISSPIRIIANL 125
            L ++   D L     +  +    I  +  +
Sbjct: 223 TLVLMDYRDFLDKLIAEKCDKFDRIVSVGMM 253


>gi|321441985|gb|ADW85407.1| arg methyltransferase [Dalcerides ingenita]
          Length = 244

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLDDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|317494309|ref|ZP_07952723.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917559|gb|EFV38904.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 430

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 11/128 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLE 98
            +     +G  ++++   PG  T  +L    +  V+ ++ D+     +K+   +   + E
Sbjct: 240 VDLLDPQNGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDENRLRRVKENLHRLQQQAE 299

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLF 154
           +   D      EK+       RI+ + P +    +       W+  D       +L    
Sbjct: 300 VKCGDG--RYPEKWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAAL---- 353

Query: 155 QKEVGERI 162
           QKE+ E I
Sbjct: 354 QKEIIEAI 361


>gi|315633698|ref|ZP_07888988.1| ribosomal protein L11 methyltransferase [Aggregatibacter segnis
           ATCC 33393]
 gi|315477740|gb|EFU68482.1| ribosomal protein L11 methyltransferase [Aggregatibacter segnis
           ATCC 33393]
          Length = 294

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   TVI+ G G G L    L LGA+  + I+ D Q     ++ + Q+   +RL++   
Sbjct: 156 DLKDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRNNAEQNGVADRLQLFLS 215

Query: 103 D 103
           D
Sbjct: 216 D 216


>gi|307327467|ref|ZP_07606653.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
 gi|306886866|gb|EFN17866.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
          Length = 415

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             ++  + +   +  G  ++E+GAG G    L   L    A  V  ++ D       +  
Sbjct: 79  PGVVALMLDQLEAQPGGRILELGAGTGYNAALLAHLAGE-AGHVTTLDVDDDLVEGARAH 137

Query: 90  SSQ 92
            + 
Sbjct: 138 LAA 140


>gi|303243574|ref|ZP_07329916.1| methyltransferase small [Methanothermococcus okinawensis IH1]
 gi|302486135|gb|EFL49057.1| methyltransferase small [Methanothermococcus okinawensis IH1]
          Length = 201

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 20/129 (15%)

Query: 19  IIPKKYMGQNFLLDLNILKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
             PKK       +D     KI  E+        V++IG G G +   +       + + +
Sbjct: 35  FSPKK-------IDKGT--KILVEALKLNKNYDVLDIGCGYGVVGIAIADE-VNSITMTD 84

Query: 78  KDQQFFPILKDISS----QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            +++   + K+            + ++Q D  +   +K ++      II+N P   G   
Sbjct: 85  INKRAVRLAKENIKLNDTSKDKNIRVVQGDLYENVKDKNYD-----MIISNPPIKAGKET 139

Query: 134 LFNWISADT 142
           +   I    
Sbjct: 140 IHRIIKEGK 148


>gi|300867947|ref|ZP_07112587.1| methyltransferase type 12 [Oscillatoria sp. PCC 6506]
 gi|300334084|emb|CBN57765.1| methyltransferase type 12 [Oscillatoria sp. PCC 6506]
          Length = 357

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           IA   G    + ++++GAG G  T  L  LG   V  IE    F   L+         + 
Sbjct: 147 IAAKLGDPRKVRILDVGAGTGRNTLPLARLG-HPVDAIELTAGFVEQLRVAVESEKLPVN 205

Query: 99  IIQDDALK 106
           +   D L 
Sbjct: 206 VTLGDVLD 213


>gi|283955352|ref|ZP_06372851.1| protein-L-isoaspartate O-methyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793112|gb|EFC31882.1| protein-L-isoaspartate O-methyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 209

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 18/151 (11%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           ++     + K+  +    D   ++EIG G G     +L+   R+V  IE+       L  
Sbjct: 58  WISSPLTVAKMTMALNFKDADNILEIGCGSGY-QAAILSKVIRRVFTIER----IENLAK 112

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR-LLFNWIS-------- 139
            ++Q    LE+   +    D +  +   +P   I    Y      +L + +S        
Sbjct: 113 KAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILLDQLSDGGVLVAP 172

Query: 140 ----ADTWPPFWESLTLLFQKEVGERITAQK 166
                  +           QKEV E      
Sbjct: 173 ILHNGKQFITRLRKNGTNLQKEVLEECLFVP 203


>gi|281205355|gb|EFA79547.1| cyclopropane fatty acid synthase [Polysphondylium pallidum PN500]
          Length = 425

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           ++K+ + +       ++EIG+G G L    +     +V  +
Sbjct: 187 IRKLIDKANLSSNHHLLEIGSGWGALAMEAVRRTGCRVTTV 227


>gi|317053389|ref|YP_004119156.1| methyltransferase type 11 [Pantoea sp. At-9b]
 gi|316953128|gb|ADU72600.1| Methyltransferase type 11 [Pantoea sp. At-9b]
          Length = 223

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G  V+E+G G G +    L      V  ++  +      K+   Q     E I  D 
Sbjct: 45  PHPGSQVLEVGCGNGAMAAQYLAERGYSVWGVDLSETAIRWAKNRFQQAGLSAEFIVGDV 104

Query: 105 LKVDFEK 111
             +   +
Sbjct: 105 CNIYQCQ 111


>gi|253580712|ref|ZP_04857976.1| 50S ribosomal protein L11 methyltransferase [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848083|gb|EES76049.1| 50S ribosomal protein L11 methyltransferase [Ruminococcus sp.
           5_1_39BFAA]
          Length = 317

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
                 ++++G G G L  + L LGA+ V+  + D    P + +    + 
Sbjct: 170 VTPDTEMLDVGTGSGILGIVALKLGAKHVLGTDLDPCAVPAVAENKEANQ 219


>gi|222056621|ref|YP_002538983.1| protein-L-isoaspartate O-methyltransferase [Geobacter sp. FRC-32]
 gi|221565910|gb|ACM21882.1| protein-L-isoaspartate O-methyltransferase [Geobacter sp. FRC-32]
          Length = 217

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEI 99
           ES       TV+EIG G G     +L+   +KV  +E+  +     +    +   + +EI
Sbjct: 75  ESLELSSEDTVLEIGTGSGY-AAAVLSRIVKKVYSVERIAELATSARQRLIKLGYDNIEI 133

Query: 100 IQDD 103
           +  D
Sbjct: 134 MAGD 137


>gi|195434106|ref|XP_002065044.1| GK14886 [Drosophila willistoni]
 gi|194161129|gb|EDW76030.1| GK14886 [Drosophila willistoni]
          Length = 340

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
             I  +        V+++GAG G L+      GAR V  IE       I  ++   H N 
Sbjct: 30  NAILRNRELFKDKIVLDVGAGTGILSAFCANAGARLVYAIEA-SNLAAIAVELI--HDNN 86

Query: 97  LEII 100
           L  I
Sbjct: 87  LTSI 90


>gi|149011363|ref|ZP_01832610.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764353|gb|EDK71284.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP19-BS75]
          Length = 316

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +P    + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIYVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|116872024|ref|YP_848805.1| UbiE/COQ5 family methlytransferase [Listeria welshimeri serovar
          6b str. SLCC5334]
 gi|116740902|emb|CAK20022.1| methyltransferase, UbiE/COQ5 family [Listeria welshimeri serovar
          6b str. SLCC5334]
          Length = 197

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          S       +++++GAG G LT     L    V  ++ D +   ++++ + +
Sbjct: 37 SIPIEKTASILDLGAGTGFLTIPAAKLVDNTVFALDLDAEMLKLIEEKAKE 87


>gi|91086503|ref|XP_971226.1| PREDICTED: similar to AGAP003462-PA [Tribolium castaneum]
 gi|270010338|gb|EFA06786.1| hypothetical protein TcasGA2_TC009722 [Tribolium castaneum]
          Length = 352

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
               G TVI+IG G G L+      GA++V  IE         + I    +  + + II+
Sbjct: 64  HLFAGKTVIDIGCGTGILSMFAAKAGAKRVFAIEC-SNIVDYARKIVETNKLDHIITIIK 122

Query: 102 DDALKVDFEKFFNISSPIRII 122
               KV+  +       + II
Sbjct: 123 G---KVEEVELPEGIDKVDII 140


>gi|15789669|ref|NP_279493.1| L-isoaspartyl protein carboxyl methyltransferase [Halobacterium sp.
           NRC-1]
 gi|169235383|ref|YP_001688583.1| methyltransferase [Halobacterium salinarum R1]
 gi|10580035|gb|AAG18973.1| L-isoaspartyl protein carboxyl methyltransferase [Halobacterium sp.
           NRC-1]
 gi|167726449|emb|CAP13234.1| putative methyltransferase [Halobacterium salinarum R1]
          Length = 238

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
           G      V++ G G G L   L   GA  V   E+D  F  + ++    +   + + +  
Sbjct: 79  GVSGADRVLDAGTGTGVLAAYLGRAGAD-VTTYEQDADFAAVARENMSLAGVSDAVSVRA 137

Query: 102 DDA 104
            D 
Sbjct: 138 GDV 140


>gi|152965118|ref|YP_001360902.1| O-methyltransferase family 3 [Kineococcus radiotolerans SRS30216]
 gi|151359635|gb|ABS02638.1| O-methyltransferase family 3 [Kineococcus radiotolerans SRS30216]
          Length = 217

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 50  TVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFPILKDISSQ---HPNRLEIIQDDA 104
           TV+E+G G G  T  LL        V  I+ D +     ++  +     PNR  +I   A
Sbjct: 62  TVVEVGTGTGVSTISLLRGMGEDGVVTTIDSDAEAQRAARESVADDGIRPNRARLINGRA 121

Query: 105 LKV 107
           L+V
Sbjct: 122 LEV 124


>gi|326403629|ref|YP_004283711.1| hypothetical protein ACMV_14820 [Acidiphilium multivorum AIU301]
 gi|325050491|dbj|BAJ80829.1| hypothetical protein ACMV_14820 [Acidiphilium multivorum AIU301]
          Length = 239

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
           A    +  G  VIE G G G  L  +   +   + + IE+D +   + +D    +     
Sbjct: 32  AAVVPARPGERVIEAGTGAGAGLLCLSYRVPELRGVGIERDPELAALARDNLRTNGFEGT 91

Query: 98  EIIQDDA----LKVDFEKFFNISSPIRIIANLP 126
            II  D     L    +  F  + P R +A+ P
Sbjct: 92  TIITADITGPPLTGPVDHAF-ANPPWRPVADTP 123


>gi|323650463|gb|ADX97312.1| M.FspI [Fischerella muscicola SAG 1427-1]
          Length = 385

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
             VI++ AG G LT      G   +  I+ D      L      +PN  +II  D  K++
Sbjct: 3   QKVIDLFAGAGGLTTGFHMAGFESLCAIDVD---AKPLATYKHNYPNT-KIIHQDIRKIN 58

Query: 109 FEKF 112
               
Sbjct: 59  PSDL 62


>gi|300711903|ref|YP_003737717.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
 gi|299125586|gb|ADJ15925.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
          Length = 265

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           K+ +         V ++G G G LT++L      +V+ I+ D       ++         
Sbjct: 22  KLVD-LDLGSRTRVADVGCGTGELTRVLARESPAEVVGIDADPALLDAAREHGP------ 74

Query: 98  EIIQDDALKVD 108
            ++  DA  + 
Sbjct: 75  -VLAGDATHLP 84


>gi|284175551|ref|ZP_06389520.1| hypothetical protein Ssol98_12985 [Sulfolobus solfataricus 98/2]
          Length = 227

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            G  V++IGAG G+        GA++V+ +E D++   ++K+
Sbjct: 102 RGKRVLDIGAGIGDSPIYFSLAGAKEVVAVEIDKRKIELMKE 143


>gi|257055975|ref|YP_003133807.1| ubiquinone/menaquinone biosynthesis methylase [Saccharomonospora
          viridis DSM 43017]
 gi|256585847|gb|ACU96980.1| methylase involved in ubiquinone/menaquinone biosynthesis
          [Saccharomonospora viridis DSM 43017]
          Length = 207

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFF 83
             G  V+E+G GPG  TQ++L   GA  V  I+ D    
Sbjct: 36 LPPGARVLELGCGPGYGTQLILDRFGAGHVDAIDLDPAMI 75


>gi|229828545|ref|ZP_04454614.1| hypothetical protein GCWU000342_00609 [Shuttleworthia satelles DSM
           14600]
 gi|229793139|gb|EEP29253.1| hypothetical protein GCWU000342_00609 [Shuttleworthia satelles DSM
           14600]
          Length = 620

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             +    K+ +        +I++ IAE      G   +++G G G LT         +  
Sbjct: 426 RQFSYRGKRKLS------KDIVEGIAEYVTLPKGGIGLDVGCGSGALTIA-CAKKNPQGK 478

Query: 75  VIEKDQ------QFFPILKDISSQHPN--RLEIIQDDALKVDFE-KFFNISSPIRIIANL 125
           ++  D+       F   L + +++          Q DALK+DFE + F+  +   +  N+
Sbjct: 479 MMGLDRWGKEYASFSKALCERNARAEGVKNASFTQGDALKLDFEDETFDAVTSNYVYHNI 538

Query: 126 PYNIGTRLLFNWIS 139
           P      +L   + 
Sbjct: 539 PSKDRQSILMETLR 552


>gi|227519761|ref|ZP_03949810.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis TX0104]
 gi|227072849|gb|EEI10812.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis TX0104]
          Length = 277

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVTSEKIDL-----LISNPPY 187


>gi|219667353|ref|YP_002457788.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Desulfitobacterium hafniense DCB-2]
 gi|219537613|gb|ACL19352.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Desulfitobacterium hafniense DCB-2]
          Length = 455

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 14/135 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLT---QMLLTLGARKVIVIEKDQQFFP-ILKDISSQHPNR 96
             +G +    V+++GAG G+++    +L   G   V  +E++ +    ILK+      + 
Sbjct: 294 AKAGIIPASRVLDVGAGTGSISIEAALLAHRGC--VYAVEENPEAQELILKNQEKFRVSN 351

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           L +I+  A             P   +           +   +      P   ++      
Sbjct: 352 LRLIRGSA------PLALQEIPP--VDVCIIGGSHGQIREILHQAPLVPGGRAVVTAVTL 403

Query: 157 EVGERITAQKNSPHY 171
           E          S  Y
Sbjct: 404 ETLAHGMEALKSLQY 418


>gi|145300988|ref|YP_001143829.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853760|gb|ABO92081.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 430

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRL 97
           A       G  V++  A PG  T  LL        V+ ++ D+     +++   +   + 
Sbjct: 236 ARLLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADENRLKRVQENLDRIGLQA 295

Query: 98  EIIQDDA 104
            +I  DA
Sbjct: 296 RVIHGDA 302


>gi|118591312|ref|ZP_01548710.1| putative cyclopropane-fatty-acyl-phospholipid synthase protein
           [Stappia aggregata IAM 12614]
 gi|118435984|gb|EAV42627.1| putative cyclopropane-fatty-acyl-phospholipid synthase protein
           [Stappia aggregata IAM 12614]
          Length = 406

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRL 97
                   G+ V+EIG G G+L   +   GA KV  +    +   I ++   ++   +++
Sbjct: 167 VAKLDLKPGMEVLEIGGGWGSLAIRMAQAGA-KVTSLNVSPEQVKIAEERVRAAGLQDQV 225

Query: 98  EIIQDD 103
             +  D
Sbjct: 226 TFVLKD 231


>gi|91774053|ref|YP_566745.1| putative methyltransferase [Methanococcoides burtonii DSM 6242]
 gi|91713068|gb|ABE52995.1| tRNA (1-methyladenosine) methyltransferase [Methanococcoides
           burtonii DSM 6242]
          Length = 250

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRL 97
           I   +G     TV++ G G G L   L ++ A++V+  E    F  + ++ I     + +
Sbjct: 87  ILGYTGLNKNDTVLDAGTGSGILAMYLGSI-AKRVLSFEVRDDFAEVARENIRRAGLDNV 145

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
           E+   +   VD  K  +    I  +      I +  +  +I +   P  +      F ++
Sbjct: 146 EVRCGNI--VDEVKELDEKFDIVTLD----TIDSATIVPYIPSILNPGGFLVTYSPFLEQ 199

Query: 158 VGERITA 164
                 A
Sbjct: 200 TALIRKA 206


>gi|49480607|ref|YP_037661.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332163|gb|AAT62809.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 239

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G  V+EIG G G     +      KV  +EK++      KD        +++IQ +A
Sbjct: 38  GANVLEIGCGTGKTAAYMTKECGYKVTAVEKNEIMVQKAKDRWMFEGLNIQLIQGEA 94


>gi|317405658|gb|EFV85956.1| tRNA (Guanine-N7-)-methyltransferase [Achromobacter xylosoxidans
           C54]
          Length = 256

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
            ++   +  TV+EIG G G  T+ + L       + +E  +     +L+ I       L 
Sbjct: 76  AAAFGREAPTVLEIGFGMGETTEKIALARPGDNFLGVEVFNAGVGSLLRRIEDSSIPNLR 135

Query: 99  IIQDDALKVDFEKFFNIS 116
           IIQ DA++V  +     S
Sbjct: 136 IIQHDAVEVVRDMIAPDS 153


>gi|303326632|ref|ZP_07357074.1| putative non-ribosomal peptide synthetase [Desulfovibrio sp.
           3_1_syn3]
 gi|302862620|gb|EFL85552.1| putative non-ribosomal peptide synthetase [Desulfovibrio sp.
           3_1_syn3]
          Length = 402

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD------QQFFPILKDISSQHP 94
           ++   L   +++E+G G G L   L    AR V     D       +    L+ +  +  
Sbjct: 60  DAIRDLHADSILEVGCGHGLLLLRLAGECARYV---GVDFSAAALNRLCKALEKLPPEQL 116

Query: 95  NRLEI 99
             L++
Sbjct: 117 ENLDV 121


>gi|289553244|ref|ZP_06442454.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 605]
 gi|289437876|gb|EFD20369.1| methyltransferase/methylase [Mycobacterium tuberculosis KZN 605]
          Length = 195

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
          I  +   L G+ V+++ AG G L    L+ GA  V+ +E DQ+   ++  
Sbjct: 42 IVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIAR 91


>gi|256371920|ref|YP_003109744.1| hemolysin A [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008504|gb|ACU54071.1| hemolysin A [Acidimicrobium ferrooxidans DSM 10331]
          Length = 249

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 12/128 (9%)

Query: 41  ESSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQ-QFFPILKDISSQHPNRLE 98
           ++        + +++GA  G  T +LL  GA  V+ ++  + Q    L+     H  R+E
Sbjct: 71  DTFDIDPSGRICLDVGASTGGFTMVLLERGAECVVCVDVGRGQLAESLR-----HDPRVE 125

Query: 99  IIQD-DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
           + +  D     +      +  + ++      I    + + +++   P     + +  Q E
Sbjct: 126 VYERTDIRAFVWP--LPEAPTLAVVDVSF--ISVLGVLDQVASLLAPGGEAVVLVKPQFE 181

Query: 158 VGERITAQ 165
           VG +I ++
Sbjct: 182 VGRQIASR 189


>gi|168023808|ref|XP_001764429.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684293|gb|EDQ70696.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 355

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 9/138 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK----VIVIEKDQQFFPILKDISSQHPN 95
           AE +   DG +V+++G G G+L+  +           V   E  + F    ++   +  +
Sbjct: 122 AERAQLQDGQSVLDVGCGWGSLSMYIAEKFPNSNVTGVSNSETQRAFIT--EECRKRGLS 179

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
            + II  D    + +K F+    I  I    +      L   IS+   P     + +   
Sbjct: 180 NVTIITCDMNVFNIDKSFD---RILSIEMFEHMKNYEKLLKKISSWLKPDGLLFIHIFVH 236

Query: 156 KEVGERITAQKNSPHYGR 173
           K +      +       R
Sbjct: 237 KSIPYHFEDKGEDDWMSR 254


>gi|154149090|ref|YP_001406300.1| putative methyltransferase [Campylobacter hominis ATCC BAA-381]
 gi|153805099|gb|ABS52106.1| putative methyltransferase [Campylobacter hominis ATCC BAA-381]
          Length = 193

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK----DISSQHPNRLEIIQ 101
           L G   IE   G G +    L+ GA+ VI IEKD++ + ILK     I+         I 
Sbjct: 43  LSGRVFIECFGGSGVMALEALSNGAKAVIAIEKDKKAYEILKQNFIKITGADFGENRAIL 102

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNI 129
            D  +   +        I +  + P+ I
Sbjct: 103 GDCFEKLPQCLSKSEDEIILYFDPPFEI 130


>gi|145590568|ref|YP_001152570.1| methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514]
 gi|145282336|gb|ABP49918.1| Methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514]
          Length = 165

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
          G +V++IGAG G  T+ LL+ G R V  ++ D     +L  + +     +++
Sbjct: 15 GQSVVDIGAGFGYSTRYLLSRGLR-VCAVDVDP---GVLSSLGAAFGEFVKV 62


>gi|146071668|ref|XP_001463170.1| hypothetical protein [Leishmania infantum]
 gi|134067253|emb|CAM65521.1| putative arginine N-methyltransferase, type III [Leishmania
           infantum JPCM5]
 gi|322496603|emb|CBZ31673.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 438

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVD 108
           V+EIGAG G L+ M   L A+ V+ +E   +   + +   +     ++++++    L  +
Sbjct: 129 VLEIGAGSGLLSMMAAKLNAKWVVAVEGSSEMASLARSNIATNGLQDKVKVLNM--LSTE 186

Query: 109 FEKFFNISSPIRIIANLPYNI 129
                    P  +++ +   +
Sbjct: 187 LTPRDLPEPPSILVSEIFGTL 207


>gi|94498267|ref|ZP_01304827.1| Cyclopropane-fatty-acyl-phospholipid synthase [Sphingomonas sp.
           SKA58]
 gi|94422269|gb|EAT07310.1| Cyclopropane-fatty-acyl-phospholipid synthase [Sphingomonas sp.
           SKA58]
          Length = 384

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           +  I +     DG  ++EIG G G L +  +   A +   +    +     +D   
Sbjct: 160 VDAILDRLTLKDGDALLEIGCGWGGLAERAMERRALRYTGLTLSSEQADYARDRLG 215


>gi|118383083|ref|XP_001024697.1| hypothetical protein TTHERM_00616270 [Tetrahymena thermophila]
 gi|89306464|gb|EAS04452.1| hypothetical protein TTHERM_00616270 [Tetrahymena thermophila
           SB210]
          Length = 231

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 11/123 (8%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
            ++++G G G+    ++    +  +V  I+ D  + P  K I S+H N +EI   +    
Sbjct: 54  RILDVGVGTGHPLYSIIDRIPKSVQVTGIDIDTNYIPAAKKIFSKHSN-VEIKYMNF--Y 110

Query: 108 DFEKFFNISSPIRIIAN----LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           D EK   +   + I ++    +P  I    +   + AD    ++  L  LFQK+   +  
Sbjct: 111 DMEKEKTLKYDVIIFSSSFMLMPDRIKALEIAKNLLADNGKIYF--LMTLFQKKGLIQEM 168

Query: 164 AQK 166
           A K
Sbjct: 169 AGK 171


>gi|54022591|ref|YP_116833.1| hypothetical protein nfa6240 [Nocardia farcinica IFM 10152]
 gi|54014099|dbj|BAD55469.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 175

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI----LKDISSQHPN 95
           AE     +G  V+EIG G G     L     R   V+  D+    +     +  ++    
Sbjct: 10  AEMLDLGEGDLVLEIGPGSGASLGELARRLVRG-RVVGIDRSATAVDRAARRYAAAIESG 68

Query: 96  RLEIIQDDALKVD 108
           R+ +   D   +D
Sbjct: 69  RITVAHLDFRALD 81


>gi|15675778|ref|NP_269952.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|71911508|ref|YP_283058.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|38605454|sp|Q99XW8|PRMA_STRP1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|13623002|gb|AAK34673.1| putative methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71854290|gb|AAZ52313.1| ribosomal protein L11 methyltransferase [Streptococcus pyogenes
           MGAS5005]
          Length = 317

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+ +   + D     + +D    +Q  + + +   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQDNIDLNQGTDNIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|116618288|ref|YP_818659.1| 50S ribosomal protein L11P methyltransferase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097135|gb|ABJ62286.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 296

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 35  ILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + + ++       G ++I++G G G L+     LG   ++  + D+    + K+  + 
Sbjct: 141 TTRLMIQALETVVRGGESMIDVGTGSGVLSVAAKQLGVAGILATDIDEMAVNVAKENLAL 200

Query: 93  HP--NRLEIIQDDALK 106
           +P  N + ++  D L+
Sbjct: 201 NPVANDVTVVTSDLLE 216


>gi|332023717|gb|EGI63941.1| UPF0431 protein C1orf66-like protein [Acromyrmex echinatior]
          Length = 493

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 6   KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           K H+L   L H KI  +  + Q       I +  A+ +   +   +I++GAG G+L + L
Sbjct: 136 KKHNL--FLKHVKIKKRHEIQQ-------IARVCADCAQESNAECIIDVGAGVGHLARSL 186

Query: 66  LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
                  VI IE+D       +    +    L     D L V+  +  +I 
Sbjct: 187 AFKYDLHVICIEQDALLSQQARKWDKELLVSLSKHLPD-LPVNMPQHISIK 236


>gi|321442039|gb|ADW85434.1| arg methyltransferase [Zeuzera coffeae]
          Length = 241

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLDDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|315427275|dbj|BAJ48887.1| conserved hypothetical protein [Candidatus Caldiarchaeum
           subterraneum]
          Length = 628

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           L     E L+ +AG++ N R E LS E+  R+  + ++
Sbjct: 184 LGGKFAEELVARAGLDKNKRVEQLSDEEVNRLNTVWSE 221


>gi|315646999|ref|ZP_07900113.1| hypothetical protein PVOR_16634 [Paenibacillus vortex V453]
 gi|315277651|gb|EFU40976.1| hypothetical protein PVOR_16634 [Paenibacillus vortex V453]
          Length = 190

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 13/79 (16%)

Query: 29 FLLDLN-----------ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIV 75
          FL+              + + +          T+ E+GAG G +T+ + +      KV++
Sbjct: 18 FLISPGQIGSVAPSSRELAETMVRPVAWEHIRTIAELGAGTGAITRHIQSAAGVDTKVLL 77

Query: 76 IEKDQQFFPILKDISSQHP 94
           EKD      LK+    + 
Sbjct: 78 FEKDPYLRRKLKERYPHYS 96


>gi|291568192|dbj|BAI90464.1| putative methyltransferase [Arthrospira platensis NIES-39]
          Length = 396

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 9/99 (9%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           N+  ++  +    +   +IEIG G G    +L  LG  +   I  D  + P L D  +  
Sbjct: 89  NLATRLINTYNLQEK-IIIEIGCGKGEFLSLLCELGNNR--GIGFDPTYVP-LADHEA-F 143

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
            +RL  IQD    +  EK+ N         +   +I T 
Sbjct: 144 SDRLTFIQD----LYSEKYANYQGDFICCRHTLEHIPTP 178


>gi|291520958|emb|CBK79251.1| spermidine synthase [Coprococcus catus GD/7]
          Length = 287

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILK 87
           F+ D  I+      +       V+ IG G G + + L       K+ V+E D+ F  + K
Sbjct: 59  FIYDEMIVH--VPMAVHPHVKNVLVIGGGDGGVARELGYYEEIEKIDVVEPDRVFVEVCK 116

Query: 88  DISSQH-----PNRLEIIQDDALKV 107
           +    +       R+ I  +D LK 
Sbjct: 117 EFFPDNACGLGDKRVSIYYEDGLKF 141


>gi|282865730|ref|ZP_06274780.1| methylase [Streptomyces sp. ACTE]
 gi|282559374|gb|EFB64926.1| methylase [Streptomyces sp. ACTE]
          Length = 228

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            D ++L           G  V+++G G G L       GAR V  ++  ++     +  +
Sbjct: 26  HDTHLLMAAVNREEIGPGTDVLDLGTGSGALALHAAQRGAR-VTAVDVARRAVMTARLNA 84

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                R+ + + D L     + +++     +I N PY
Sbjct: 85  LIRRRRISVHRSDLLSALPGRSYDL-----VICNPPY 116


>gi|239940081|ref|ZP_04692018.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Streptomyces roseosporus NRRL 15998]
 gi|239986569|ref|ZP_04707233.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Streptomyces roseosporus NRRL 11379]
 gi|291443509|ref|ZP_06582899.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346456|gb|EFE73360.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           roseosporus NRRL 15998]
          Length = 421

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV-IEKDQQFFPILKDISSQHP 94
           + ++ +++G  DG  ++EIG G G L       GAR   V +  +Q+     +   +   
Sbjct: 191 IDRLLDAAGVTDGTRLLEIGTGWGELAIRAAARGARVTTVTLSAEQRELARARIREAGFE 250

Query: 95  NRLEIIQDD 103
           +R+E+   D
Sbjct: 251 DRVEVRLSD 259


>gi|170767237|ref|ZP_02901690.1| putative methyltransferase [Escherichia albertii TW07627]
 gi|170123571|gb|EDS92502.1| putative methyltransferase [Escherichia albertii TW07627]
          Length = 245

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107
           ++IG G G L  ML       V+   +E D +     ++  +Q P  +R+ +   D  + 
Sbjct: 49  LDIGTGSGLLALMLAQRTDDSVMIDAVELDSEAATQAQENVAQSPWAHRVNVHTADIQQW 108

Query: 108 DFEKFFNISSPIRIIANLPYN 128
              +    +    II+N PY 
Sbjct: 109 ISRQ---TTRFDLIISNPPYY 126


>gi|163738838|ref|ZP_02146252.1| protein-L-isoaspartate O-methyltransferase [Phaeobacter
           gallaeciensis BS107]
 gi|163741451|ref|ZP_02148842.1| protein-L-isoaspartate O-methyltransferase [Phaeobacter
           gallaeciensis 2.10]
 gi|161385185|gb|EDQ09563.1| protein-L-isoaspartate O-methyltransferase [Phaeobacter
           gallaeciensis 2.10]
 gi|161388166|gb|EDQ12521.1| protein-L-isoaspartate O-methyltransferase [Phaeobacter
           gallaeciensis BS107]
          Length = 215

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + ++       TV+E+G G G     +L+  AR+V  +++  +     + I  Q
Sbjct: 64  PSVVGLMTQALQISPRDTVLEVGTGSGY-QAAILSKLARRVYTVDRHARLVREARQIFDQ 122

Query: 93  -HPNRLEIIQDD 103
            H + +  +  D
Sbjct: 123 LHLSNITSLVGD 134


>gi|170583563|ref|XP_001896639.1| hypothetical protein [Brugia malayi]
 gi|158596116|gb|EDP34517.1| conserved hypothetical protein [Brugia malayi]
          Length = 350

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQ 101
                  V+++G+G G L+      GAR+VI IE         K I   +   N +E+I 
Sbjct: 61  HLFKDKVVMDVGSGTGILSMFAAKAGARRVIAIEF-SNMATQSKQIVKDNDLENIIEVIH 119

Query: 102 D 102
            
Sbjct: 120 G 120


>gi|217972928|ref|YP_002357679.1| type 11 methyltransferase [Shewanella baltica OS223]
 gi|217498063|gb|ACK46256.1| Methyltransferase type 11 [Shewanella baltica OS223]
          Length = 204

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 41/145 (28%), Gaps = 9/145 (6%)

Query: 49  ITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLE-----IIQD 102
              +EIG G GN  Q++    GA  +  ++ D +     +      P  L+     +   
Sbjct: 40  EHALEIGCGFGNGIQLIREHFGAGHITAVDIDPEMVAAAQSRWQARPQGLKGLSFSVADA 99

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
             L     +F  +           +    + +   +  + +    +         +  R+
Sbjct: 100 SCLPFADGEFDMVFDFAVFHHIPDWQAAIKDVARVLKPNGYFVIEDLYRAAICNPLSRRL 159

Query: 163 TAQKNSPHYG---RLSVLTGWRTKA 184
                   +     L VL     + 
Sbjct: 160 FEHPQQNRFNHREWLLVLRQAGFEI 184


>gi|41615032|ref|NP_963530.1| hypothetical protein NEQ238 [Nanoarchaeum equitans Kin4-M]
 gi|40068756|gb|AAR39091.1| NEQ238 [Nanoarchaeum equitans Kin4-M]
          Length = 175

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          ++EIG G G + + LL  G      +E D+     LK+    
Sbjct: 25 ILEIGVGSGYILENLLKKGFD-AYGVEIDKDVLKYLKEKFKD 65


>gi|89094663|ref|ZP_01167600.1| hypothetical protein MED92_00520 [Oceanospirillum sp. MED92]
 gi|89081133|gb|EAR60368.1| hypothetical protein MED92_00520 [Oceanospirillum sp. MED92]
          Length = 223

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + + I +    + G  V++ GAG G +    +  GAR+V+  + D     +L    +   
Sbjct: 74  LARYILDHPEIVKGKKVMDFGAGSGVVGIAAMMAGAREVVCCDIDSD--ALLACRGNVDL 131

Query: 95  NRLEI-IQDDALKVDFE 110
           N +E     D    D  
Sbjct: 132 NGVECRYHGDLFAFDEP 148


>gi|119718760|ref|YP_925725.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
          [Nocardioides sp. JS614]
 gi|119539421|gb|ABL84038.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
          [Nocardioides sp. JS614]
          Length = 188

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI 85
             +  +        G  V+++G+G G  T +L  L   A +V+ +E + +    
Sbjct: 44 PRTVAAMLRLLEVRPGDRVLDVGSGSGWTTGLLAELTGSAGRVLGLELEPELVAF 98


>gi|57505630|ref|ZP_00371557.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57016177|gb|EAL52964.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 237

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQD 102
              +VI+IG G G  T  L  L A++++ ++  +    IL++ +S+        + +  +
Sbjct: 37  KDKSVIDIGCGTGVWTLHLAFL-AKEILALDNSKAMLAILQEDASKLGLSNIKSVNLSFE 95

Query: 103 DALKVDFEKFFNI 115
           D +K +    F+I
Sbjct: 96  DFMKENANLRFDI 108


>gi|329925224|ref|ZP_08280167.1| phage prohead protease, HK97 family [Paenibacillus sp. HGF5]
 gi|328940057|gb|EGG36390.1| phage prohead protease, HK97 family [Paenibacillus sp. HGF5]
          Length = 702

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           G  V++IG G G L  ++       + + I+        L+          E+++ DAL 
Sbjct: 441 GTAVLDIGPGGGVLLDLIEERLPHARPVGIDISSNVIEALEKRKRLEHKAWEVLKGDAL- 499

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRL 133
                  +   P  +   +  +I   L
Sbjct: 500 ----NLRDYVKPGSVDTVIFSSILHEL 522


>gi|326329263|ref|ZP_08195588.1| putative methyltransferase [Nocardioidaceae bacterium Broad-1]
 gi|325952838|gb|EGD44853.1| putative methyltransferase [Nocardioidaceae bacterium Broad-1]
          Length = 268

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
          IA       G+ ++++G G G   + L  +GA  V+ +E D +     +  
Sbjct: 38 IARIMEHSPGVDLVDVGCGTGIEARQLQAVGA-TVLGVEPDARMAAYARSR 87


>gi|322371733|ref|ZP_08046276.1| protein-L-isoaspartate O-methyltransferase [Haladaptatus
          paucihalophilus DX253]
 gi|320548618|gb|EFW90289.1| protein-L-isoaspartate O-methyltransferase [Haladaptatus
          paucihalophilus DX253]
          Length = 201

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           + +      TV+++G G G +   L   GA +VI  +  +      +  + ++
Sbjct: 36 VDHADPGANDTVLDLGTGTGAIALALAP-GAERVIGRDISEGMLDEARTKAEEN 88


>gi|255322681|ref|ZP_05363825.1| RNA methyltransferase, RsmD family [Campylobacter showae RM3277]
 gi|255300242|gb|EET79515.1| RNA methyltransferase, RsmD family [Campylobacter showae RM3277]
          Length = 188

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
           L G   IE   G   +    L+ GA+K   IE D+  + I    +    + LE++  D  
Sbjct: 45  LAGKIFIEAFGGSALMAAEALSNGAQKAYAIEIDKNAYKIALQNAKLIGDELEVVNGDTF 104

Query: 106 KVDFEKFFNISSPIRIIANLPYNI 129
           ++        + P+ +  + P++I
Sbjct: 105 EITPAIVAKQNLPVILYLDPPFDI 128


>gi|239981782|ref|ZP_04704306.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces albus
           J1074]
 gi|291453643|ref|ZP_06593033.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces albus
           J1074]
 gi|291356592|gb|EFE83494.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces albus
           J1074]
          Length = 478

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L  I    G   G+ ++++G G G++          +V+ +   ++     +  +++   
Sbjct: 188 LDLICRKLGLAPGMRLLDVGCGWGSMALHAAREYGVQVVGVTLSREQAAYARKRAAEQGL 247

Query: 94  PNRLEIIQDD 103
            +R+EI   D
Sbjct: 248 ADRVEIRVQD 257


>gi|229822430|ref|YP_002883956.1| Methyltransferase type 12 [Beutenbergia cavernae DSM 12333]
 gi|229568343|gb|ACQ82194.1| Methyltransferase type 12 [Beutenbergia cavernae DSM 12333]
          Length = 249

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           V+++G G G    ML    AR V V+  D     +       H + +  I  DA
Sbjct: 40  VLDVGCGTGTFATMLA---ARGVDVVGVDPAAASLDVARGKPHADAVTWIHGDA 90


>gi|269213887|ref|ZP_06158240.1| ribosomal protein L11 methyltransferase [Neisseria cinerea ATCC
           14685]
 gi|269145275|gb|EEZ71693.1| ribosomal protein L11 methyltransferase [Neisseria cinerea ATCC
           14685]
          Length = 139

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             +G +V++ G G G LT   L LGA   + ++ D+Q     KD + Q+    +    D 
Sbjct: 5   LKNGESVLDYGCGSGILTIASLKLGAGSAVGVDIDEQAIRASKDNAEQNNVDAQFFLPDG 64

Query: 105 L 105
           L
Sbjct: 65  L 65


>gi|254500711|ref|ZP_05112862.1| Protein-L-isoaspartate O-methyltransferase superfamily [Labrenzia
           alexandrii DFL-11]
 gi|222436782|gb|EEE43461.1| Protein-L-isoaspartate O-methyltransferase superfamily [Labrenzia
           alexandrii DFL-11]
          Length = 220

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           +L+  +I  K+ + +       V+ IGAG G  T +   L A  V+ +E++    
Sbjct: 63  YLMKPHIFGKLIQLAQISADDIVLVIGAGSGYSTAVAAKLAA-SVVALEENADLA 116


>gi|165933443|ref|YP_001650232.1| 16S rRNA m(4)C1402 methyltranserfase [Rickettsia rickettsii str.
           Iowa]
 gi|189082216|sp|B0BYA0|RSMH_RICRO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831529|sp|A8GSS6|RSMH_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|165908530|gb|ABY72826.1| S-adenosyl-methyltransferase [Rickettsia rickettsii str. Iowa]
          Length = 307

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 29/69 (42%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L ++ E+     G + ++   G G  ++ +L      V  +++D       ++I   +  
Sbjct: 10  LNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQNYGE 69

Query: 96  RLEIIQDDA 104
           R + ++ + 
Sbjct: 70  RFDFVETNF 78


>gi|163788487|ref|ZP_02182933.1| Methyltransferase type 11 [Flavobacteriales bacterium ALC-1]
 gi|159876807|gb|EDP70865.1| Methyltransferase type 11 [Flavobacteriales bacterium ALC-1]
          Length = 215

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH 93
           L  I  + G   G  V +IG   G L+  L     +K  V  ++        LK I+   
Sbjct: 35  LDTIFTAIGIEKGDDVADIGCHEGYLSVRLANEVGKKGRVYAVDVRTDRLETLKAIAKDR 94

Query: 94  P-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
             N ++ I  D    D            II +  + +   +  
Sbjct: 95  DLNNIKTIVGD---YDNPNLPKGQLDTVIIMDTYHEMTDYMTI 134


>gi|119964487|ref|YP_949461.1| O-methyltransferase family protein [Arthrobacter aurescens TC1]
 gi|119951346|gb|ABM10257.1| putative O-methyltransferase family protein [Arthrobacter aurescens
           TC1]
          Length = 752

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDA 104
             VIEIGA  G  T  L     +  ++I  E D +   I ++  S+    +R+ I  +DA
Sbjct: 591 QLVIEIGALFGYSTIHLARGLGKGGQLISFEIDPKSAEIARENVSRFGLDDRVRISTEDA 650

Query: 105 L 105
           +
Sbjct: 651 V 651


>gi|87199777|ref|YP_497034.1| cyclopropane-fatty-acyl-phospholipid synthase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135458|gb|ABD26200.1| Cyclopropane-fatty-acyl-phospholipid synthase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 423

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 16/122 (13%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQ 92
           N + ++        G  V+EIG G G L + L      +V  I   D+Q      + +  
Sbjct: 193 NKVDRLGARLDLRPGSRVLEIGCGWGFLARGLAEKSGAQVTGISLSDEQL-----EWARG 247

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
              R  +   D L  D+                   I +  +   +  + WP +++ L  
Sbjct: 248 ELARSGLGGIDYLHRDYRDVEGQYD----------AIASVEMVEAVGREYWPSYFDCLAR 297

Query: 153 LF 154
             
Sbjct: 298 CL 299


>gi|329121754|ref|ZP_08250371.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
 gi|327468224|gb|EGF13710.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
          Length = 648

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +K  + +      TVI+   G G ++  L    A+ VI IE  +      K+ + ++  +
Sbjct: 295 EKALDFANLSGDETVIDAYCGTGTISLYLA-QKAKHVIGIEIIKDAIENAKENAKRNKIK 353

Query: 97  -LEIIQDDALKVDFE 110
            +E    D  K   E
Sbjct: 354 NVEFHAADVAKYLPE 368


>gi|323495849|ref|ZP_08100917.1| protein-L-isoaspartate O-methyltransferase [Vibrio sinaloensis DSM
           21326]
 gi|323319065|gb|EGA72008.1| protein-L-isoaspartate O-methyltransferase [Vibrio sinaloensis DSM
           21326]
          Length = 208

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+E+G G G  T +L  L    V  IE+       L+  + +
Sbjct: 61  PYIVAKMTEVLELSRDSKVLEVGTGSGYQTAVLAQL-VEHVFSIER----IKALQWEAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D  + +   +P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWQGWAAKAPFDAI 145


>gi|307611020|emb|CBX00654.1| hypothetical protein LPW_23631 [Legionella pneumophila 130b]
          Length = 253

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 50/139 (35%), Gaps = 9/139 (6%)

Query: 50  TVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            +++IG G G+ T +L   +   +++ I+  +Q         ++     E+      +  
Sbjct: 33  NILDIGCGDGHYTSLLAGKVKHGQILGIDSSEQMIMHANQQWARTGLSFEVHN--IEEFH 90

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL---TLLFQ--KEVGERIT 163
             + F+++     +     +I    +F+ +  +       S      + Q  KE+ ++  
Sbjct: 91  QPQSFDLALSFWCLHWTNIHISFPNIFHLLKREGKLYAVMSSFSDHSILQTWKELAKQNL 150

Query: 164 AQKNSPHYGRLSVLTGWRT 182
            +  +  Y    +   +  
Sbjct: 151 YRDLTEQYISP-INEQYFY 168


>gi|307154198|ref|YP_003889582.1| type 12 methyltransferase [Cyanothece sp. PCC 7822]
 gi|306984426|gb|ADN16307.1| Methyltransferase type 12 [Cyanothece sp. PCC 7822]
          Length = 277

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           E +      T++EIG GPG  T      G + V  +E   +   + +     +P ++EI
Sbjct: 47  ELAQLPPDATILEIGCGPGTATVSFAEKGFKMV-CLEPSLEACQLAQKNCQAYP-KVEI 103


>gi|225859801|ref|YP_002741311.1| adenine-specific DNA methylase [Streptococcus pneumoniae 70585]
 gi|225721361|gb|ACO17215.1| adenine-specific DNA methylase [Streptococcus pneumoniae 70585]
          Length = 317

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNR 96
           I E   + + IT++E+G+G G L    LT  A+KV  + +E D     +   ++     +
Sbjct: 101 IVEELFTEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEMDDLLIDLAASMADVIGLQ 160

Query: 97  LEIIQDDALK 106
              +Q DA++
Sbjct: 161 AGFVQGDAVR 170


>gi|224283295|ref|ZP_03646617.1| Methyltransferase type 11 [Bifidobacterium bifidum NCIMB 41171]
          Length = 258

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          L+G  V+E   G G  TQ++L    +    +++D Q   I+  +++++ 
Sbjct: 35 LEGKDVVEFAPGLGRTTQLILERKPKSYRGVDRDPQVVDIITKLTAENA 83


>gi|194431657|ref|ZP_03063948.1| protein-L-isoaspartate O-methyltransferase [Shigella dysenteriae
           1012]
 gi|194420013|gb|EDX36091.1| protein-L-isoaspartate O-methyltransferase [Shigella dysenteriae
           1012]
 gi|332087681|gb|EGI92808.1| protein-L-isoaspartate O-methyltransferase [Shigella dysenteriae
           155-74]
          Length = 208

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKNLDLYNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQL 162


>gi|229917063|ref|YP_002885709.1| modification methylase, HemK family [Exiguobacterium sp. AT1b]
 gi|229468492|gb|ACQ70264.1| modification methylase, HemK family [Exiguobacterium sp. AT1b]
          Length = 286

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  +      +    ++++G G G +   L      +V  ++  ++   + K  ++ 
Sbjct: 97  EELIDWVLGQLRHVKDDEIVDVGTGSGAIAITLSLELGVRVQTVDISREAIEVAKRNAAA 156

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
               ++  + D L        + S  + +++N PY     LL
Sbjct: 157 LGATVQFYEGDGL----APIADHSIRV-LVSNPPYIEADELL 193


>gi|167630501|ref|YP_001681000.1| ribosomal protein l11 methyltransferase [Heliobacterium
           modesticaldum Ice1]
 gi|226710088|sp|B0TAD9|PRMA_HELMI RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|167593241|gb|ABZ84989.1| ribosomal protein l11 methyltransferase [Heliobacterium
           modesticaldum Ice1]
          Length = 316

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                 V+++G G G L+     LGA++V+ ++ D       ++  I +Q    +E+ ++
Sbjct: 171 VHAEAHVLDVGTGSGVLSIAAALLGAKRVLAVDNDPVAVATAQENVILNQVDEIVEVRRN 230

Query: 103 DAL 105
           D L
Sbjct: 231 DLL 233


>gi|56963881|ref|YP_175612.1| hypothetical protein ABC2116 [Bacillus clausii KSM-K16]
 gi|56910124|dbj|BAD64651.1| hypothetical protein [Bacillus clausii KSM-K16]
          Length = 362

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 7/118 (5%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNR 96
           KIA         +V+++G G G   + L       +   IE D      +    +     
Sbjct: 182 KIAAVIKKRKAESVLDVGCGYGGYVKRLAHTFPGTQFDGIEVDHDVC--VSARKNNVNEN 239

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
             II+ D      ++ ++    + +  N+ Y   T                + + ++ 
Sbjct: 240 ATIIEGDFFHFQGKRPYD----VLMFNNILYYFSTETRVEMFKRAAAQLATDGVLIVI 293


>gi|71020583|ref|XP_760522.1| hypothetical protein UM04375.1 [Ustilago maydis 521]
 gi|46100417|gb|EAK85650.1| hypothetical protein UM04375.1 [Ustilago maydis 521]
          Length = 618

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           FLLD        +++  + G  V+++G G G L+      GA++VI I+
Sbjct: 259 FLLDP-------QNAHLIRGKIVMDVGCGTGILSLFAARAGAKQVIAID 300


>gi|313896539|ref|ZP_07830088.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974724|gb|EFR40190.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 191

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 18/156 (11%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-PNRLEII 100
           +       V ++GAG G+++     +  +  V  IEK+     ++ + + +     + ++
Sbjct: 30  ARITPDAVVYDVGAGTGSISIEAARMAPQGHVYAIEKNPDGIALIAENAKKFGAENITVV 89

Query: 101 QD---DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP-FWESLTLLFQK 156
           +    D L  D            II      +    + + I A   P     +  +  Q 
Sbjct: 90  EGTAPDVL-ADLPAL-----DAAIIGGSGRKLA--DILDIIGARLRPQGRIVANAITMQT 141

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
                     +   Y   +V          +  + P
Sbjct: 142 VAACLDYFHAHKDDYSYEAVQVQ----INRLERVGP 173


>gi|312137827|ref|YP_004005163.1| sam dependent methyltransferase [Rhodococcus equi 103S]
 gi|311887166|emb|CBH46475.1| SAM dependent methyltransferase [Rhodococcus equi 103S]
          Length = 279

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             +SG  DG  V+++GAG GN        GA  V+  +   + F   ++++++    L+ 
Sbjct: 43  VRASGVHDGQRVLDVGAGTGNAAIPAALTGAD-VVASDLTPELFDRGRELAAKRGAHLDW 101

Query: 100 IQDDA 104
            + DA
Sbjct: 102 READA 106


>gi|331219527|ref|XP_003322440.1| cyclopropane-fatty-acyl-phospholipid synthase [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309301430|gb|EFP78021.1| cyclopropane-fatty-acyl-phospholipid synthase [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 485

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGN 60
           L  I E +    G  V+EIG+G G+
Sbjct: 232 LDLIIEKAKIRKGDRVLEIGSGWGS 256


>gi|307293154|ref|ZP_07573000.1| phospholipid N-methyltransferase [Sphingobium chlorophenolicum L-1]
 gi|306881220|gb|EFN12436.1| phospholipid N-methyltransferase [Sphingobium chlorophenolicum L-1]
          Length = 209

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDI 89
              + + + E     DG  VIE+G G G  T+ +L  G    K+ V+E +  F   L+  
Sbjct: 46  SRYLARLMVEHIVPDDG-RVIELGGGTGVFTRAILGTGLPPEKLEVVEINPAFARGLRRH 104

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
                  + +++  A  V             +I+ LP
Sbjct: 105 FPH----VSVLETPAQIVSTATAGEAGEYQSVISGLP 137


>gi|269960813|ref|ZP_06175184.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834477|gb|EEZ88565.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 418

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP 94
            ++ +         V+EIG G G +   +      +V    I ++Q  +   K       
Sbjct: 191 DRLCQQLELKPTDHVVEIGTGWGAMAIYMAEQYGCQVTTTTISEEQHAYAEQKIKERGLE 250

Query: 95  NRLEIIQDD 103
           +++ ++++D
Sbjct: 251 DKITLLKED 259


>gi|269967781|ref|ZP_06181828.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio alginolyticus
           40B]
 gi|269827601|gb|EEZ81888.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio alginolyticus
           40B]
          Length = 418

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP 94
            ++ +         V+EIG G G +   +      +V    I ++Q  +   K       
Sbjct: 191 DRLCQQLELKPTDHVVEIGTGWGAMAIYMAEQYGCQVTTTTISEEQHAYAEQKIKERGLE 250

Query: 95  NRLEIIQDD 103
           +++ ++++D
Sbjct: 251 DKITLLKED 259


>gi|225022636|ref|ZP_03711828.1| hypothetical protein CORMATOL_02679 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944544|gb|EEG25753.1| hypothetical protein CORMATOL_02679 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 195

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDA- 104
              V+++ AG G L     + GA +V+++E D     +++  +    HPN ++++Q  A 
Sbjct: 46  DAVVLDLFAGSGALGLEAASRGAAEVVLVESDPHTCAVIRRNAEAVGHPN-VQVMQMAAS 104

Query: 105 --LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +     K+F+      ++A+ PY++    +   + A
Sbjct: 105 AYVAQAPRKYFD-----MVLADPPYDLAPETVVEMLEA 137


>gi|223937012|ref|ZP_03628920.1| Protein of unknown function methylase putative [bacterium Ellin514]
 gi|223894293|gb|EEF60746.1| Protein of unknown function methylase putative [bacterium Ellin514]
          Length = 198

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ---HPNRLEIIQDDA 104
           G  V+E+ AG G L+   L+ GA +V+ +E  Q+    ++  + +    P  LE+   D 
Sbjct: 42  GARVLELFAGTGALSLECLSRGAAQVVCVEMAQRHAQAIRHNAGKVGIGPEVLEVRVQDV 101

Query: 105 LKVDFEKFFNISSPIRIIANLPY 127
                +          +IA+ PY
Sbjct: 102 FNALPQLAAAGRQFEVVIADPPY 124


>gi|183984483|ref|YP_001852774.1| hypothetical protein MMAR_4513 [Mycobacterium marinum M]
 gi|183177809|gb|ACC42919.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 253

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI----LKDISSQHPNRLEIIQD 102
            G  V+++G G G L+  +   GA  V+ ++ D+         L     +  +R+     
Sbjct: 38  AGKRVLDVGCGHGALSIDIAQAGA-SVLGVDLDEGRVAFANRNLAQRFPELADRVRFRAV 96

Query: 103 DALKVDFEKFFNI 115
           D   +  ++ F++
Sbjct: 97  DVRSLPVDEPFDV 109


>gi|170695266|ref|ZP_02886413.1| protein-L-isoaspartate O-methyltransferase [Burkholderia graminis
           C4D1M]
 gi|170139886|gb|EDT08067.1| protein-L-isoaspartate O-methyltransferase [Burkholderia graminis
           C4D1M]
          Length = 708

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E++    G  V+++G G G     + +     V  IE+        +    +
Sbjct: 71  PVIVARMLEAAQLSPGDRVLDVGTGSGY-AAAVASRIVAHVDSIERHASLADSARQALHK 129

Query: 93  HP-NRLEIIQDD 103
           H  + + +   D
Sbjct: 130 HAFHNVAVHHAD 141


>gi|166365618|ref|YP_001657891.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166087991|dbj|BAG02699.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 412

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           KI ++       TVIE+ AG G +   L   G +  +++E +Q     L+    Q     
Sbjct: 59  KILQTVEPT-NYTVIELFAGCGGMALGLENAGLKTQLLVEINQDCVNTLRLNRPQW---- 113

Query: 98  EIIQDDALKVDFEKFFN 114
            +I  D  K+ F  F +
Sbjct: 114 NVINQDIKKIKFSNFRD 130


>gi|168039496|ref|XP_001772233.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676403|gb|EDQ62886.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 346

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-N 95
           +++ +  G   G  V+++G G G   + +       V  I  +       +  + +   +
Sbjct: 101 ERVVDLLGLKPGEKVLDVGCGVGGPMRAIAAYSQAFVTGITINDYQVERARSHNKKAGLD 160

Query: 96  RL-EIIQDDALKVDFEK-FFNISSPIRIIANLP 126
           RL E++  + L++ FE   F+ +  I    + P
Sbjct: 161 RLCEVVCGNFLQMPFEDNSFDGAYSIEATCHAP 193


>gi|150403488|ref|YP_001330782.1| methyltransferase small [Methanococcus maripaludis C7]
 gi|150034518|gb|ABR66631.1| methyltransferase small [Methanococcus maripaludis C7]
          Length = 200

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 19  IIPKKYMGQNFLLDLNILKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
             PKK       +D   +  I  E         V+++G G G +   ++      V + +
Sbjct: 35  FSPKK-------IDKGTI--ILVEELELSKSDDVLDVGCGYGVIGISIVDE-VNSVTMTD 84

Query: 78  KDQQFFPILK---DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
            + +   + +    ++ +    +E+ Q D  +    K +++     II+N P   G  L+
Sbjct: 85  VNNRSVSLTRKNVKLNGKSEKNIEVFQGDLYEKVKNKKYSL-----IISNPPIKAGKELI 139

Query: 135 FNWISAD 141
              IS  
Sbjct: 140 HKIISEG 146


>gi|91226042|ref|ZP_01260969.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio alginolyticus
           12G01]
 gi|91189483|gb|EAS75760.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio alginolyticus
           12G01]
          Length = 418

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP 94
            ++ +         V+EIG G G +   +      +V    I ++Q  +   K       
Sbjct: 191 DRLCQQLELKPTDHVVEIGTGWGAMAIYMAEQYGCQVTTTTISEEQHAYAEQKIKERGLE 250

Query: 95  NRLEIIQDD 103
           +++ ++++D
Sbjct: 251 DKITLLKED 259


>gi|34581504|ref|ZP_00142984.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262889|gb|EAA26393.1| unknown [Rickettsia sibirica 246]
          Length = 307

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 29/69 (42%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L ++ E+     G + ++   G G  ++ +L      V  +++D       ++I   +  
Sbjct: 10  LNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQNYGE 69

Query: 96  RLEIIQDDA 104
           R + ++ + 
Sbjct: 70  RFDFVETNF 78


>gi|319740455|gb|ADV60521.1| arg methyltransferase [Bombyx mori]
          Length = 244

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KV+ IE         + I  +++  + +EII+
Sbjct: 19  HLFQGKTVLDIGCGTGILSMFAAKAGATKVLAIEC-SNIVDYARKIIEANRLDDVIEIIK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|313140445|ref|ZP_07802638.1| methyltransferase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132955|gb|EFR50572.1| methyltransferase [Bifidobacterium bifidum NCIMB 41171]
          Length = 265

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          L+G  V+E   G G  TQ++L    +    +++D Q   I+  +++++ 
Sbjct: 42 LEGKDVVEFAPGLGRTTQLILERKPKSYRGVDRDPQVVDIITKLTAENA 90


>gi|307265201|ref|ZP_07546760.1| O-methyltransferase family 3 [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919823|gb|EFN50038.1| O-methyltransferase family 3 [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 215

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS--SQHPN 95
           I +         ++EIG   G  T ++    +   V+ IE+D     I K+    ++  +
Sbjct: 48  IVK---LKKPNNILEIGTAIGYSTIIMAKAYSEVSVVTIERDINLAEIAKENFKKAKVED 104

Query: 96  RLEIIQDDALKV 107
           R+E+I  +A  V
Sbjct: 105 RIELICGEAQHV 116


>gi|294138832|ref|YP_003554810.1| ribosomal RNA small subunit methyltransferase B [Shewanella
           violacea DSS12]
 gi|293325301|dbj|BAJ00032.1| ribosomal RNA small subunit methyltransferase B [Shewanella
           violacea DSS12]
          Length = 425

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A      DG  V++  A PG  T  LL L   +++ ++ D++    ++    +     ++
Sbjct: 233 ATLLAPKDGELVLDACAAPGGKTCHLLELANIQLVAVDFDEKRLERVQQNLDRLSLDAKL 292

Query: 100 IQDDALKVDFEK 111
           +  DA  +D   
Sbjct: 293 VHGDAADIDSWW 304


>gi|289550638|ref|YP_003471542.1| Methyltransferase [Staphylococcus lugdunensis HKU09-01]
 gi|315658133|ref|ZP_07911005.1| methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289180170|gb|ADC87415.1| Methyltransferase [Staphylococcus lugdunensis HKU09-01]
 gi|315496462|gb|EFU84785.1| methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 241

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 38  KIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            I +  S        +++IG G G LT ML  +G  +V  ++       I    ++Q  N
Sbjct: 25  DIVQQLSVSLPSNPKILDIGCGTGTLTSMLTNIG--EVTGMDLSVDMLAI----ATQKSN 78

Query: 96  RLEIIQDDALKVDFEKFFNI 115
           +++ ++ D    +    F++
Sbjct: 79  QVQWLEGDMTDFNLNLSFDL 98


>gi|282165074|ref|YP_003357459.1| hypothetical protein MCP_2404 [Methanocella paludicola SANAE]
 gi|282157388|dbj|BAI62476.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 267

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-- 93
            +K+   +G   G  V+++G G G  + ML  +G R V+ ++   +     K  + Q   
Sbjct: 34  TEKLIGEAGIKPGSYVLDVGCGMGKTSCMLAGMGCR-VVGVDIMPRMIKESKARAWQTGV 92

Query: 94  PNRLEIIQDDALKVDFEK 111
            ++   ++ DA  + FE 
Sbjct: 93  SDKTTFVECDARSLPFEP 110


>gi|269218317|ref|ZP_06162171.1| Trk-type K+ transport system, NAD-binding component [Actinomyces
           sp. oral taxon 848 str. F0332]
 gi|269212176|gb|EEZ78516.1| Trk-type K+ transport system, NAD-binding component [Actinomyces
           sp. oral taxon 848 str. F0332]
          Length = 220

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 47  DGITVIEIGAG-PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
           D   V+ +G G  G      L    R+V+ IE+D            Q  +R  II+ DA 
Sbjct: 7   DDDAVLVVGLGRFGTAIASTLDGLGREVLAIERDPVLV-------QQWSHRFRIIEGDAT 59

Query: 106 KVD 108
             D
Sbjct: 60  SAD 62


>gi|268325998|emb|CBH39586.1| conserved hypothetical protein, SAM dependent methyltransferase
          family [uncultured archaeon]
          Length = 188

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI 89
          K+  ++G   G  V+E+G GPG  T  +  +   +  V  ++        +K+ 
Sbjct: 41 KLLRAAGLKPGQKVLEVGCGPGFFTIPVAKIVGEEGFVYAVDVHPLAIERVKEK 94


>gi|257421857|ref|ZP_05598847.1| protoporphyrinogen oxidase hemK [Enterococcus faecalis X98]
 gi|257163681|gb|EEU93641.1| protoporphyrinogen oxidase hemK [Enterococcus faecalis X98]
 gi|315155438|gb|EFT99454.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0043]
          Length = 277

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVTSEKIDL-----LISNPPY 187


>gi|302546574|ref|ZP_07298916.1| putative methyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302464192|gb|EFL27285.1| putative methyltransferase [Streptomyces himastatinicus ATCC 53653]
          Length = 254

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           L G  V+++GAG G  T++L   GA  V  +E        L+         + +++ DA
Sbjct: 43  LAGAEVLDVGAGTGIATRLLSDRGA-CVTAVEPGAGMAAQLR----AFAPDVRLVRGDA 96


>gi|255019953|ref|ZP_05292027.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970612|gb|EET28100.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidithiobacillus
           caldus ATCC 51756]
          Length = 419

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNR 96
           I        G  +++IG G G L        A + + +   +  +   K+   +    +R
Sbjct: 162 ICRKLHLEPGDKLLDIGCGWGGLLAWAAQHYAIEGVGVTLSEAQYHYAKERMEREGLADR 221

Query: 97  LEIIQDDALKVDFEKFFN 114
           +EI   D   +     F+
Sbjct: 222 VEIRLQDYRDIPERDHFD 239


>gi|295837344|ref|ZP_06824277.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. SPB74]
 gi|295826497|gb|EDY43078.2| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces sp. SPB74]
          Length = 412

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDI 89
             I   + E +    G+ V+EIG+G  N   L +++   G  +V+ ++ D +     + +
Sbjct: 79  PQIQAMMLEQAQVKPGMRVLEIGSGGLNAAYLAELVGEDG--EVVTVDIDPEVTDRARRL 136

Query: 90  SSQH-PNRLEIIQDDA 104
              H   R+ ++  DA
Sbjct: 137 LDDHGYGRVHVVTVDA 152


>gi|261409530|ref|YP_003245771.1| methyltransferase small [Paenibacillus sp. Y412MC10]
 gi|261285993|gb|ACX67964.1| methyltransferase small [Paenibacillus sp. Y412MC10]
          Length = 201

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 40  AESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
            ++        V+++G G G   LT   +      V +I+ + +   + K+ + ++    
Sbjct: 51  IDAMDFGQDAQVLDVGCGYGPIGLTAARMASQGH-VTMIDINSRAVELAKENAKRNG--- 106

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLP 126
            II    L+ D  +         ++ N P
Sbjct: 107 -IINVTILESDLFEAVKDQQFDVVLTNPP 134


>gi|187778858|ref|ZP_02995331.1| hypothetical protein CLOSPO_02453 [Clostridium sporogenes ATCC
           15579]
 gi|187772483|gb|EDU36285.1| hypothetical protein CLOSPO_02453 [Clostridium sporogenes ATCC
           15579]
          Length = 218

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 8/137 (5%)

Query: 43  SGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLE 98
                   ++E+G   G  ++   L + G   +  IE+D +   I +    +H   ++++
Sbjct: 51  ISVKKPKKILELGTAIGYSSIFMSLSSNGESNITTIERDDKMIEIARSNIEKHGFKDKIK 110

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP----FWESLTLLF 154
           II  D L++  +                YN         ++ D         +  +    
Sbjct: 111 IIHGDCLEILKDLDDKYDMIFMDAGKGHYNEFLPYCLKLLNKDGIIIADNVLFRGMVAND 170

Query: 155 QKEVGERITAQKNSPHY 171
           +  +  +IT  K    Y
Sbjct: 171 ELVIRRKITIVKRMRKY 187


>gi|163759472|ref|ZP_02166557.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Hoeflea
           phototrophica DFL-43]
 gi|162283069|gb|EDQ33355.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Hoeflea
           phototrophica DFL-43]
          Length = 416

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGN 60
           + +AE+ G   G  V+EIG G G 
Sbjct: 192 RALAEAIGIKPGDHVLEIGCGWGG 215


>gi|134094356|ref|YP_001099431.1| hypothetical protein HEAR1125 [Herminiimonas arsenicoxydans]
 gi|133738259|emb|CAL61304.1| conserved hypothetical protein, putative SAM-dependent
           methyltransferases [Herminiimonas arsenicoxydans]
          Length = 256

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 13/149 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
             DG+ ++E+G G G     L       +I I+  ++     K ++  H    RL     
Sbjct: 41  VKDGMRILEVGCGNGITAIELARQFDVDIIAIDYAEEMITSAKQLAEGHDFKGRLTFQTG 100

Query: 103 DALKVD-FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
           D   +  F+  F++    R++ NLP     R     I+    P     +    Q  + + 
Sbjct: 101 DVTALPEFQGAFDLIYTERVLINLPDWESQRSAIKGITDMLAPNGLYVMCENSQDGLDKT 160

Query: 162 I----------TAQKNSPHYGRLSVLTGW 180
                              Y R S L  +
Sbjct: 161 NSLRAMVQLPKMDPPWHNRYFRDSELAQF 189


>gi|88855943|ref|ZP_01130605.1| ubiquinone/menaquinone biosynthesis methyltransferase [marine
           actinobacterium PHSC20C1]
 gi|88814810|gb|EAR24670.1| ubiquinone/menaquinone biosynthesis methyltransferase [marine
           actinobacterium PHSC20C1]
          Length = 255

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             +     G  +++I AG G  +  L   GAR V+ ++         +        ++E 
Sbjct: 39  VRAVAPEPGERILDIAAGTGTSSAALHRNGAR-VVGLDFSTGMVEQARKRHK----KIEF 93

Query: 100 IQDDA 104
           IQ +A
Sbjct: 94  IQGNA 98


>gi|332519629|ref|ZP_08396093.1| protein-L-isoaspartate O-methyltransferase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044188|gb|EGI80382.1| protein-L-isoaspartate O-methyltransferase [Lacinutrix algicola
           5H-3-7-4]
          Length = 213

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL-EIIQDD 103
              G  ++EIG G G  T +L  +GA KV  IE+ Q+ F        +   R  ++I  D
Sbjct: 78  VNRGDKILEIGTGSGYQTAVLCEIGA-KVYSIERQQELFKKTSKFLPKLGYRAKKLIFGD 136

Query: 104 ALK 106
             K
Sbjct: 137 GYK 139


>gi|315655324|ref|ZP_07908224.1| SAM-dependent methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315656763|ref|ZP_07909650.1| SAM-dependent methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315490264|gb|EFU79889.1| SAM-dependent methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315492718|gb|EFU82322.1| SAM-dependent methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 353

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILK 87
             +I        G  V+E G G G +T  LL     +  V   E    F  + +
Sbjct: 105 AAQIVMEGDIFPGANVVEAGVGSGAMTMSLLGAVGSSGHVTSFELRPDFAEVAR 158


>gi|300115412|ref|YP_003761987.1| methyltransferase type 11 [Nitrosococcus watsonii C-113]
 gi|299541349|gb|ADJ29666.1| Methyltransferase type 11 [Nitrosococcus watsonii C-113]
          Length = 215

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            +    G  ++++G G G LTQ      +     I  D 
Sbjct: 43 RHAHLSPGEQILDVGCGTGVLTQWAAEKISSSGRAIGIDP 82


>gi|300114585|ref|YP_003761160.1| tRNA (guanine-N(7)-)-methyltransferase [Nitrosococcus watsonii
           C-113]
 gi|299540522|gb|ADJ28839.1| tRNA (guanine-N(7)-)-methyltransferase [Nitrosococcus watsonii
           C-113]
          Length = 236

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 12/135 (8%)

Query: 41  ESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
            +  +     ++EIG G G +L Q       R  + IE        +L  + ++    + 
Sbjct: 56  AAIFNRQAERILEIGFGNGESLLQQARAAPERDFLGIEVYRPGIGHLLLRLKAEGLENIR 115

Query: 99  IIQDDALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           +I  DA +V      N            P     +    +      + +     P  W  
Sbjct: 116 VIHGDAWEVLQRALPNPSLDGVQIFFPDPWPKKRHHKRRLIQPSFVDLLECKIKPGGWLH 175

Query: 150 LTLLFQKEVGERITA 164
           L   +Q +  E+I A
Sbjct: 176 LATDWQ-DYAEQIKA 189


>gi|296329183|ref|ZP_06871684.1| ribosomal protein L11 methyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296153539|gb|EFG94356.1| ribosomal protein L11 methyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 310

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---ISSQHPNRLEIIQDDA 104
             +VI+IG G G L      LGA +V   + D+    + K+   +++   N +++++ + 
Sbjct: 172 NKSVIDIGTGSGILMIAGKILGAGEVYGTDIDEFSMEVAKENLILNNISLNDVKLLKGNL 231

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLL--FNWISADTWPPFWESLTLLFQKEV 158
           L+V   K F+I     ++ N+  +I  +LL    +I  +     +  +      EV
Sbjct: 232 LEVIENKKFDI-----VVCNILADILVKLLDEIKYILKENSIVLFSGIIEDKLNEV 282


>gi|289640957|ref|ZP_06473127.1| All-trans-retinol 13,14-reductase [Frankia symbiont of Datisca
           glomerata]
 gi|289509272|gb|EFD30201.1| All-trans-retinol 13,14-reductase [Frankia symbiont of Datisca
           glomerata]
          Length = 514

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 15/123 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
                  D   V+ IG+G G LT   LL    R+V+V+E+         D    + +   
Sbjct: 3   VRQDAERDSYDVVVIGSGLGGLTAAALLAHWGRRVLVVER--------HDRIGGYAHAFT 54

Query: 99  IIQDDALKVDFEKFFNISSPIRIIAN---LPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
             +    + D         P   + N   +P  +    + + +      PF+  +   FQ
Sbjct: 55  RRRH---RFDSAVHLVAGGPPVTVGNPGIMPVLLDLLGVADRLEFHRLDPFYRVVLPGFQ 111

Query: 156 KEV 158
            +V
Sbjct: 112 LDV 114


>gi|255264731|ref|ZP_05344073.1| methyltransferase small [Thalassiobium sp. R2A62]
 gi|255107066|gb|EET49740.1| methyltransferase small [Thalassiobium sp. R2A62]
          Length = 256

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDI 89
           +D  +L   A ++ +  G  V+E+G G G  +  L        +  +E    +  +    
Sbjct: 33  VDPVLL---AAATEAKSGDRVLELGCGAGAASLCLARRVEGLSLTGVELQPAYAALAARN 89

Query: 90  SSQHPNRLEIIQDD--ALKVDFEKFFNISSPIRIIANLPY 127
           +  +   L +I  D  AL +D  +         +IAN PY
Sbjct: 90  AKANDLSLTVINADLRALPMDLRQ----QQFDHVIANPPY 125


>gi|241668875|ref|ZP_04756453.1| 23S rRNA 5-methyluridine methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877407|ref|ZP_05250117.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843428|gb|EET21842.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 449

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++K+  +     +  ++I++  G GN T  +    A+ VI +E +Q      K+ +
Sbjct: 285 INKKMIKRAIDLLEISENDSIIDLFCGLGNFTLPISQY-AKTVIGVEGEQTMVGRAKETA 343

Query: 91  SQH 93
           + +
Sbjct: 344 ANN 346


>gi|229163257|ref|ZP_04291212.1| Ribosomal protein L11 methyltransferase [Bacillus cereus R309803]
 gi|228620320|gb|EEK77191.1| Ribosomal protein L11 methyltransferase [Bacillus cereus R309803]
          Length = 312

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G T+I++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDTIIDVGTGSGVLSIAAAKLGASAVQAYDLDPVAVE 212


>gi|167892276|ref|ZP_02479678.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 7894]
          Length = 469

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE  G+ DG+ V++  A PG  T  +L L   +V+ +E D    P + +  ++     ++
Sbjct: 269 AEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADV 328

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-----FNWISADTWPPFW 147
              DA   D  ++ +     R++A++P +  + ++       W+      P  
Sbjct: 329 RVGDA--ADPAQWHDGRPFDRVLADVPCS-ASGIVRRHPDIRWLRRAADIPAL 378


>gi|167769486|ref|ZP_02441539.1| hypothetical protein ANACOL_00820 [Anaerotruncus colihominis DSM
           17241]
 gi|167668454|gb|EDS12584.1| hypothetical protein ANACOL_00820 [Anaerotruncus colihominis DSM
           17241]
          Length = 306

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
               G+ +++IG G G L    L  GAR  + ++ D+    + ++ +  +    R   I 
Sbjct: 166 AVTPGMDLLDIGTGSGILAIAALLFGARAAVGVDIDEVAVRVARENAKANGVGGRARFIA 225

Query: 102 DD-ALKVD 108
            D A KVD
Sbjct: 226 GDLAAKVD 233


>gi|167626443|ref|YP_001676943.1| 23S rRNA 5-methyluridine methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167596444|gb|ABZ86442.1| RNA methyltransferase, TrmA family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 449

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++K+  +     +  ++I++  G GN T  +    A+ VI +E +Q      K+ +
Sbjct: 285 INKKMIKRAIDLLEISENDSIIDLFCGLGNFTLPISQY-AKTVIGVEGEQTMVNRAKETA 343

Query: 91  SQH 93
           + +
Sbjct: 344 ANN 346


>gi|145355591|ref|XP_001422042.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582281|gb|ABP00336.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 877

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGN 60
           +  +   +G   G  V+EIG G G 
Sbjct: 653 IDAMIARAGIKPGDRVLEIGCGWGT 677


>gi|313901492|ref|ZP_07834943.1| methyltransferase [Thermaerobacter subterraneus DSM 13965]
 gi|313468244|gb|EFR63707.1| methyltransferase [Thermaerobacter subterraneus DSM 13965]
          Length = 199

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
          NIL +  E +       V+++ AG G+L    L+ GAR+ + IE D +   +LK
Sbjct: 34 NILGRAVEGA------RVLDLFAGTGSLAIEALSRGAREALCIESDPRVVAVLK 81


>gi|304403943|ref|ZP_07385605.1| Methyltransferase type 11 [Paenibacillus curdlanolyticus YK9]
 gi|304346921|gb|EFM12753.1| Methyltransferase type 11 [Paenibacillus curdlanolyticus YK9]
          Length = 464

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDA 104
           DG TV+E  A  G+ T      GA+KV  ++  +      +   ++    +R+E +  DA
Sbjct: 258 DGATVLECFAHTGSFTLHACKYGAKKVTCLDISEHAIDTARRNVARNGFDDRVEFVVADA 317

Query: 105 LKVDFEKFFNISSPIRIIAN 124
                 +   +   +   A 
Sbjct: 318 FDYLRHQAKGVDDRLARAAV 337


>gi|293390951|ref|ZP_06635285.1| methyltransferase domain family [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951485|gb|EFE01604.1| methyltransferase domain family [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 266

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEI 99
           ++       TV++IG G G     L     R+V  ++       +L D   +     + +
Sbjct: 53  QTIQVQSHETVLDIGCGLGTFALPLAQQC-RQVYALDYSVGMLDVLADYKQKLQLENVTL 111

Query: 100 IQDDALKVDFEKFFNISSPIRIIAN 124
           I     +   E + ++     ++A+
Sbjct: 112 IH----RSWVEDWADVPQADVVLAS 132


>gi|296136934|ref|YP_003644176.1| Cyclopropane-fatty-acyl-phospholipid synthase [Thiomonas intermedia
           K12]
 gi|295797056|gb|ADG31846.1| Cyclopropane-fatty-acyl-phospholipid synthase [Thiomonas intermedia
           K12]
          Length = 423

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 13/115 (11%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHPN 95
            ++ +      G  V+EIG G G L ++    G R   I +  +Q  +   +      P 
Sbjct: 192 ARVLDQLQLQPGARVLEIGCGWGGLAEVGAQRGLRLDGITLSAEQLAYARARLAQPAPPA 251

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
           RLE+        D+     I+ P          I +  +F  +    WP F+ ++
Sbjct: 252 RLEL-------CDYRDLDRIAPPDGYDG-----IASIEMFEAVGEAYWPGFFRTV 294


>gi|255319451|ref|ZP_05360665.1| SAM-dependent methyltransferase [Acinetobacter radioresistens SK82]
 gi|262378525|ref|ZP_06071682.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303391|gb|EET82594.1| SAM-dependent methyltransferase [Acinetobacter radioresistens SK82]
 gi|262299810|gb|EEY87722.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 224

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 5/112 (4%)

Query: 50  TVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK 106
            ++ IG G G  L  +L      K   I+         K    Q    NR+  I  D  +
Sbjct: 46  HLLIIGCGTGYELGYLLQQFPEWKFTAIDISATMLDKAKQYVQQFDGNNRVNFILGDMSQ 105

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +D ++ F+ +  I +   + Y   ++ L            +  +T    K V
Sbjct: 106 LDTDQNFDAALSILVTHFISYAEKSKFLKQIYETLKPGGMF--ITFDLVKMV 155


>gi|229120914|ref|ZP_04250156.1| Methyltransferase [Bacillus cereus 95/8201]
 gi|228662574|gb|EEL18172.1| Methyltransferase [Bacillus cereus 95/8201]
          Length = 251

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 14/133 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  +  ++   +   V +IG+G G  ++ LL  G   VI +E +     + +    ++P 
Sbjct: 26  IDYLLSANELNENQIVADIGSGTGIFSRQLLDSG-LHVIGVEPNDDMRKMAEQSLKRYP- 83

Query: 96  RLEIIQDDA----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--------WISADTW 143
           R + I+  A    LK +      ++          + I  + +          W S D  
Sbjct: 84  RFQSIKATAENTTLKENSVDLVTVAQAFHWFDKEAFKIECQRILKQKANVALVWNSRDVT 143

Query: 144 PPFWESLTLLFQK 156
            P  +    + QK
Sbjct: 144 SPLIKENAEICQK 156


>gi|188587374|ref|YP_001918919.1| conserved hypothetical protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179352061|gb|ACB86331.1| conserved hypothetical protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 180

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++++  E         V+ +G G    T   +  L   KV+ ++KD +     +    + 
Sbjct: 29  VVRREVELGNITSQDVVLNVGCGAIPFTAIHISQLTGAKVVALDKDPEAVKKARYSLEKF 88

Query: 94  P--NRLEIIQDD 103
                +EI + D
Sbjct: 89  QLNKNIEIYEGD 100


>gi|170049565|ref|XP_001857528.1| arginine n-methyltransferase [Culex quinquefasciatus]
 gi|167871352|gb|EDS34735.1| arginine n-methyltransferase [Culex quinquefasciatus]
          Length = 364

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           + I       +G TV+++GAG G L+      GA++V  +E       + +++  ++
Sbjct: 56  QAILGHRDLFEGKTVLDVGAGTGILSVFCAQAGAKRVYAVEA-SNLARLAREVVKEN 111


>gi|289768443|ref|ZP_06527821.1| hypothetical protein SSPG_01711 [Streptomyces lividans TK24]
 gi|145244283|gb|ABP49094.1| hypothetcal protein [Streptomyces lividans]
 gi|289698642|gb|EFD66071.1| hypothetical protein SSPG_01711 [Streptomyces lividans TK24]
          Length = 317

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 50  TVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPN-RLEIIQDDALKV 107
            V++IG G G  + ++   L  R+V+ ++         ++ +   P+  +E ++ D    
Sbjct: 94  VVLDIGCGRGTSSLVIAEQLRPRRVVGLDAAPSLLAQARERAKDLPDSTVEFVEGDF--- 150

Query: 108 DFEKFFNISSPIRIIANLPYN 128
                 + SS + + A   Y+
Sbjct: 151 HDLPLPDGSSDVVVAAFCLYH 171


>gi|329729336|gb|EGG65744.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 277

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 106 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 165

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
           ALK    +   ++    +I+N PY
Sbjct: 166 ALKPLINEDIKLNG---LISNPPY 186


>gi|293607598|ref|ZP_06689932.1| ribosomal RNA small subunit methyltransferase D [Achromobacter
           piechaudii ATCC 43553]
 gi|292814031|gb|EFF73178.1| ribosomal RNA small subunit methyltransferase D [Achromobacter
           piechaudii ATCC 43553]
          Length = 202

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQ 101
           +G      V+++ AG G L     + G   V ++E+D+     L+ +  +   + + I  
Sbjct: 60  AGEFADKQVLDLFAGSGALGFEAASRGVAHVQMVERDKTAASALRTLRDKLKADMIRIHV 119

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIG-----TRLLFNWISADTWPPFWESLTLLFQK 156
            DA++V   +  + S    I+ + P+  G       +L   ++            +   +
Sbjct: 120 GDAMQV--AERMDASRFDLILLDPPFGQGWLTRLWPILPGILNEHGLVYVEAESPIEAPE 177

Query: 157 EVGERITAQKNSPHY 171
                   +  + HY
Sbjct: 178 GFQILRQDKAGAVHY 192


>gi|239637610|ref|ZP_04678582.1| ribosomal protein L11 methyltransferase [Staphylococcus warneri
           L37603]
 gi|239596828|gb|EEQ79353.1| ribosomal protein L11 methyltransferase [Staphylococcus warneri
           L37603]
          Length = 312

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD 103
               +VI++G G G L+     +G +++  ++ D+    + K+   ++   N +E +  +
Sbjct: 172 KPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVNVAKENFEKNHCLNAIEAVPGN 231

Query: 104 ALKVDFEKF 112
            LK + E F
Sbjct: 232 LLKDEKEHF 240


>gi|226365368|ref|YP_002783151.1| methyltransferase [Rhodococcus opacus B4]
 gi|226243858|dbj|BAH54206.1| putative methyltransferase [Rhodococcus opacus B4]
          Length = 269

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
               G+T++++G GPG +T  L  L A   V  +EKD +   + ++  ++      I+  
Sbjct: 35  HLRAGMTLLDVGCGPGTITADLAGLLAPGVVTAVEKDDEALSLARNEFARRG----IVNV 90

Query: 103 DALKVDFEKFFNISSPIRIIA 123
            A+  D            ++ 
Sbjct: 91  AAVVSDVHALDFPDDTFDVVH 111


>gi|254381772|ref|ZP_04997136.1| methyltransferase [Streptomyces sp. Mg1]
 gi|194340681|gb|EDX21647.1| methyltransferase [Streptomyces sp. Mg1]
          Length = 218

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQDDALKVD 108
           V+EIG G G L       GAR   V   D  +  ++    +    R  L ++  D     
Sbjct: 36  VLEIGTGTGALALHAAGRGARVTAV---DVAWPAVVTARLNALRQRVPLRVLHGDFAART 92

Query: 109 FEKFFNISSPIRIIANLPY 127
             + +++     ++AN PY
Sbjct: 93  EGRRYDL-----VVANPPY 106


>gi|126335696|ref|XP_001370935.1| PREDICTED: similar to coactivator associated arginine
           methyltransferase 1-like [Monodelphis domestica]
          Length = 544

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 27  QNFLLD-LNIL---KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           QN L D +      + I ++        V+++G G G L+   +  GARKV  +E
Sbjct: 165 QNMLQDFVRTATYHRAILQNHTDFKDKVVLDVGCGSGILSFFAVQAGARKVYAVE 219


>gi|322703369|gb|EFY94979.1| ubiE/COQ5 methyltransferase, putative [Metarhizium anisopliae ARSEF
           23]
          Length = 273

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 64/173 (36%), Gaps = 16/173 (9%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD----ISSQHPNRLE 98
                +T+++IG GPG +T  L   +   +V  +E   +   +L+      +S+  + ++
Sbjct: 37  HIKPDMTILDIGCGPGTITVDLAGYVPEGRVTGLE---RAATVLEQARALAASRAVDNID 93

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL-LFNWISADTWPPFWESLTLLFQKE 157
            ++ DA   +  ++ + S  I     +  ++   + +   +     P    +        
Sbjct: 94  FVEGDA---NALRYPDDSFDIVFCHQVLQHVKDPVGVLREMRRVAKPGGIVAARESDYGA 150

Query: 158 VGER---ITAQKNSPHYGRLSVLTGWRTKA-TMMFDISPHVFFPSPKVTSTVI 206
                     +     YG+L+   G    A  M+   +    F +  +TS+V 
Sbjct: 151 FTWYPDVAGMKAWQALYGKLAAHNGGEPDAGRMVHAWARRAGFAAEAITSSVS 203


>gi|311031619|ref|ZP_07709709.1| ribosomal protein L11 methyltransferase [Bacillus sp. m3-13]
          Length = 313

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 40  AESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK---DISSQHP 94
            ++          VI++G G G L+     L A++V+ ++ D       K    ++  HP
Sbjct: 166 IQAIERTVKPQDKVIDVGTGSGVLSIAAAMLDAKEVLALDLDDVAVESAKLNIKLNKVHP 225

Query: 95  NRLEIIQDDALK 106
             + + Q++ LK
Sbjct: 226 -TVTVKQNNLLK 236


>gi|254512355|ref|ZP_05124422.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacteraceae
           bacterium KLH11]
 gi|221536066|gb|EEE39054.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacteraceae
           bacterium KLH11]
          Length = 402

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 17/136 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            +  G+  G  ++EIG G G   +        +V  +   Q+     K+   +       
Sbjct: 178 VDEMGAKPGDHILEIGCGWGGFAEYAAKERGLRVTGLTISQEQLNFAKERIEKAG----- 232

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW----ESLTLLFQ 155
              D ++   + + +              I +  +F  +    WP ++    + L    Q
Sbjct: 233 -LSDLVEFKLQDYRDERGQYD-------GIASIEMFEAVGQKYWPTYFDTVRDRLKPGAQ 284

Query: 156 KEVGERITAQKNSPHY 171
             +     A      Y
Sbjct: 285 ATLQIITVADHRWDIY 300


>gi|229586901|ref|YP_002845402.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5]
 gi|259495903|sp|C3PNZ9|RSMH_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|228021951|gb|ACP53659.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5]
          Length = 307

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 29/69 (42%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L ++ E+     G + ++   G G  ++ +L      V  +++D       ++I   +  
Sbjct: 10  LNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQSYGE 69

Query: 96  RLEIIQDDA 104
           R + ++ + 
Sbjct: 70  RFDFVETNF 78


>gi|152989798|ref|YP_001355520.1| protein-L-isoaspartate O-methyltransferase [Nitratiruptor sp.
           SB155-2]
 gi|151421659|dbj|BAF69163.1| L-isoaspartyl protein carboxyl methyltransferase [Nitratiruptor sp.
           SB155-2]
          Length = 211

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           ++     + K+      +   +V+EIG G G     +L+   R+V  +E+ ++     K 
Sbjct: 63  WISSPLTVAKMTHFLEPVGADSVLEIGCGSGY-QAAILSRIVRRVFTVERIERLVREAKQ 121

Query: 89  ISSQHP-NRLEIIQDDAL 105
              +   + + +   D +
Sbjct: 122 RFKELGTSNIHVRYADGM 139


>gi|51891212|ref|YP_073903.1| putative protoporphyrinogen oxidase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51854901|dbj|BAD39059.1| putative protoporphyrinogen oxidase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 305

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD 88
           L++  + +    ++ +   + V +IG G G +   +  L    +V+ ++   +   +  +
Sbjct: 116 LVEQAVARLTGGAAEARGVLRVADIGTGSGAIAVAVAHLLPHAQVVAVDLSPEALAVAAE 175

Query: 89  --ISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWISADTWPP 145
               +   +R+   Q D L                I++N PY     +         W P
Sbjct: 176 NARLNGVADRVRFRQGDLL----APLAEEGGRFAAILSNPPYIREDEIAGLMPEVRDWEP 231

Query: 146 FW 147
             
Sbjct: 232 RL 233


>gi|50122453|ref|YP_051620.1| protein-L-isoaspartate O-methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|55583886|sp|Q6D1B6|PIMT_ERWCT RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|49612979|emb|CAG76430.1| protein-L-isoaspartate O-methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 208

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ K+ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVAKMTELLNLTPESRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I   LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWASRGPFDAIIVTAAPPEIPQALLEQL 162


>gi|21283770|ref|NP_646858.1| hypothetical protein MW2041 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486910|ref|YP_044131.1| hypothetical protein SAS2020 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297210062|ref|ZP_06926455.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300910425|ref|ZP_07127877.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21205212|dbj|BAB95906.1| MW2041 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245353|emb|CAG43828.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296885262|gb|EFH24202.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300888267|gb|EFK83458.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 278

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 107 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 166

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
           ALK    +   ++    +I+N PY
Sbjct: 167 ALKPLINEDIKLNG---LISNPPY 187


>gi|28899329|ref|NP_798934.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153839203|ref|ZP_01991870.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|260361831|ref|ZP_05774847.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|260878980|ref|ZP_05891335.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260895453|ref|ZP_05903949.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|260902362|ref|ZP_05910757.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|31076892|sp|Q87LQ6|PIMT_VIBPA RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|28807553|dbj|BAC60818.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149747268|gb|EDM58254.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|308088222|gb|EFO37917.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308090472|gb|EFO40167.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308110571|gb|EFO48111.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308114477|gb|EFO52017.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|328474138|gb|EGF44943.1| protein-L-isoaspartate O-methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 208

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E         V+EIG G G  T +L  +    V  +E+       L+  + +
Sbjct: 61  PYIVARMTELLELQRASNVLEIGTGSGYQTAVLAQI-VDHVYSVER----IKSLQWEAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D    +    P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWLGWETKGPFDAI 145


>gi|84514568|ref|ZP_01001932.1| methyltransferase, UbiE/COQ5 family [Loktanella vestfoldensis
           SKA53]
 gi|84511619|gb|EAQ08072.1| methyltransferase, UbiE/COQ5 family [Loktanella vestfoldensis
           SKA53]
          Length = 210

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+EI  G G+ T +LL       +  +   +   I +        +L +   D 
Sbjct: 37  LRPTDHVLEIACGTGS-TAVLLAPDVASYLATDVSPEMIRIAR-------GKLPVKAAD- 87

Query: 105 LKVDFEKFFNISSPIRII 122
           L+ D       + P  ++
Sbjct: 88  LRFDVAGELPETGPFDVV 105


>gi|167736565|ref|ZP_02409339.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 14]
 gi|167822184|ref|ZP_02453655.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 9]
 gi|226194606|ref|ZP_03790201.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei Pakistan 9]
 gi|254182248|ref|ZP_04888845.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1655]
 gi|254188214|ref|ZP_04894726.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254260319|ref|ZP_04951373.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1710a]
 gi|157935894|gb|EDO91564.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184212786|gb|EDU09829.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1655]
 gi|225933307|gb|EEH29299.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei Pakistan 9]
 gi|254219008|gb|EET08392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1710a]
          Length = 469

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE  G+ DG+ V++  A PG  T  +L L   +V+ +E D    P + +  ++     ++
Sbjct: 269 AEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADV 328

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-----FNWISADTWPPFW 147
              DA   D  ++ +     R++A++P +  + ++       W+      P  
Sbjct: 329 RVGDA--ADPAQWHDGRPFDRVLADVPCS-ASGIVRRHPDIRWLRRAADIPAL 378


>gi|310659239|ref|YP_003936960.1| tRNA (guanine-n(7)-)-methyltransferase [Clostridium sticklandii DSM
           519]
 gi|308826017|emb|CBH22055.1| tRNA (guanine-N(7)-)-methyltransferase
           (tRNA(m7G46)-methyltransferase) [Clostridium
           sticklandii]
          Length = 222

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 31  LDLNILKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILK 87
           +DL+++ K+  + + + +   ++EIG G G     L         + IEK D      + 
Sbjct: 22  IDLSLITKLDIKEAYANNQPLMLEIGCGKGGFLLELARRNPEVNYLGIEKNDALLLEAVT 81

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               ++ + ++ +  DA K+  E +F      RI  N 
Sbjct: 82  KAFEENLDNIKFVSFDASKI--EDYFTKGDVCRIYLNF 117


>gi|292490458|ref|YP_003525897.1| cyclopropane-fatty-acyl-phospholipid synthase [Nitrosococcus
           halophilus Nc4]
 gi|291579053|gb|ADE13510.1| Cyclopropane-fatty-acyl-phospholipid synthase [Nitrosococcus
           halophilus Nc4]
          Length = 434

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL--KDISSQH 93
           L +I +         ++EIG G G+L          +V      +Q +     +   +  
Sbjct: 187 LDRICKKLVLTPQDHLLEIGTGWGSLALHAARHYGCRVTTTTISEQQYQFACQRVREAGL 246

Query: 94  PNRLEIIQDD 103
            +R+ ++Q D
Sbjct: 247 EDRIRVLQQD 256


>gi|292655251|ref|YP_003535148.1| protein-L-isoaspartate O-methyltransferase [Haloferax volcanii DS2]
 gi|291370660|gb|ADE02887.1| protein-L-isoaspartate O-methyltransferase [Haloferax volcanii DS2]
          Length = 208

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
              +       V+++G G G +   L    A++V+  +  +      +  +++    +E 
Sbjct: 36  VHYADPSPEDVVLDLGTGTGAIALALAP-DAKRVVGRDISEGMLEQARTKAAEVG--IEN 92

Query: 100 IQDDALKVDFEKFFNISSPIRIIANL 125
           ++ D  +       +      ++ N 
Sbjct: 93  VEFDEGRFRDPNVGDDEQIDIVVTNF 118


>gi|289192410|ref|YP_003458351.1| protein of unknown function DUF890 [Methanocaldococcus sp.
           FS406-22]
 gi|288938860|gb|ADC69615.1| protein of unknown function DUF890 [Methanocaldococcus sp.
           FS406-22]
          Length = 261

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
           +  TV+EIG G   +  +L+      +V   E D++F    K    ++   ++II     
Sbjct: 84  EKPTVLEIGTGHSAIISLLIKKFYDAEVYATEVDEEFIDFAKKNVERNKLNIKIINSKGK 143

Query: 106 KVDFEKFFNISSPIRIIANLPYN 128
            ++  K         II+  P+ 
Sbjct: 144 VIEGIKEIKGKKFDLIISYPPFY 166


>gi|240168412|ref|ZP_04747071.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium kansasii ATCC
           12478]
          Length = 262

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ-FFPILKDISSQHPNRLEIIQD- 102
            D   V+EIG G G  T  +        VI +E  ++    +L  I S +   + +I+  
Sbjct: 82  RDAPLVLEIGCGSGVSTLAMSRAEPHLDVIAVEIYRRGLAQLLCAIDSANATNIRLIRGN 141

Query: 103 --DALK 106
             D LK
Sbjct: 142 GIDVLK 147


>gi|188534014|ref|YP_001907811.1| Protein methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188029056|emb|CAO96924.1| Protein methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 281

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           +V+++G G G +   L +  A    V+  D+   P    ++  +  RL +     ++ D+
Sbjct: 112 SVLDLGTGSGAIALALASERAD-CRVLGVDR--IPAAVALAQHNAARLGLANATFMQGDW 168

Query: 110 EKFFNISSPIRIIANLPY 127
               N      I++N PY
Sbjct: 169 FSALNQQRFAMIVSNPPY 186


>gi|159482338|ref|XP_001699228.1| hypothetical protein CHLREDRAFT_152357 [Chlamydomonas reinhardtii]
 gi|158273075|gb|EDO98868.1| hypothetical protein CHLREDRAFT_152357 [Chlamydomonas reinhardtii]
          Length = 438

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 52/187 (27%), Gaps = 42/187 (22%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRL---EIIQDDA 104
            +V+E+GAG G ++  L        V   +      P L+  + ++   L     +   A
Sbjct: 233 PSVLELGAGTGGVSLALAATRTAASVTATDL-PDLLPTLRLNAGRNSGVLPPGGRLHVAA 291

Query: 105 LKV------DFEKFFNISSPIRIIAN--------LPYNIGTRLLFNWISADTWPPFWESL 150
           LK       D +    +  P  +I           P    T LL   +     P     L
Sbjct: 292 LKWGPEGEADVQALGPVRPPYDVICGSDLIYYSYTPDTPHTALLLWTLRRLVAPTTRVYL 351

Query: 151 TLLFQK-----EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV 205
           +L         E      AQ       R SV           F +            S V
Sbjct: 352 SLSLHHNPEEVEHFLGWAAQDFHVLRLRRSV-------PEH-FRVP----------DSLV 393

Query: 206 IHFIPHL 212
           +   P  
Sbjct: 394 VRLTPRR 400


>gi|119475428|ref|ZP_01615781.1| SAM-dependent methyltransferase [marine gamma proteobacterium
           HTCC2143]
 gi|119451631|gb|EAW32864.1| SAM-dependent methyltransferase [marine gamma proteobacterium
           HTCC2143]
          Length = 336

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N ++ +  S    +  +VIE+G G G     L     + V  ++  QQ        + +
Sbjct: 161 PNAIELLTSSFNRKNYGSVIEVGPGEGAFLAELAPRF-QHVYAVDNSQQMLDKASSFAKK 219

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR--LLFNW 137
              + +  +  D      +   N+ +   ++  + +++ +   + F+ 
Sbjct: 220 SGLSNITFVYGD---TKAQPLQNLQADCAVVNMVLHHLASPADIFFDL 264


>gi|118594930|ref|ZP_01552277.1| cyclopropane-fatty-acyl-phospholipid synthase [Methylophilales
           bacterium HTCC2181]
 gi|118440708|gb|EAV47335.1| cyclopropane-fatty-acyl-phospholipid synthase [Methylophilales
           bacterium HTCC2181]
          Length = 401

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--I 89
             N L  I           V+EIG+G G  +          V      ++ +  +K+   
Sbjct: 163 SKNKLDIICNKLKLKKTDRVVEIGSGWGGFSIYAAKKYGCHVTTTTISKEQYRYVKEQIK 222

Query: 90  SSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
                  + ++  D   LK  F+K  +I   I  + +  YN    ++   +  D
Sbjct: 223 LLGMQKNITVLLKDYRDLKGQFDKLVSIEM-IEAVGHQFYNQYFSVISKLLKND 275


>gi|110634365|ref|YP_674573.1| S-adenosyl-methyltransferase MraW [Mesorhizobium sp. BNC1]
 gi|123353547|sp|Q11GR7|RSMH_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
          AltName: Full=16S rRNA m(4)C1402 methyltransferase;
          AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
          RsmH
 gi|110285349|gb|ABG63408.1| S-adenosyl-methyltransferase MraW [Chelativorans sp. BNC1]
          Length = 339

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +L ++ E+     G  +++   G G  T+ LL  GA  VI I++D       K ++ +
Sbjct: 18 PVLLAEVLEALEPARGKLILDGTFGAGGYTRALLEAGAD-VIAIDQDPDAIAGGKPLAQE 76

Query: 93 HPNRLEI 99
             RL +
Sbjct: 77 FAPRLRL 83


>gi|124808818|ref|XP_001348416.1| arginine-N-methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23497310|gb|AAN36855.1| arginine-N-methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 401

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             I ++   +    V+++G G G L+    T GA+ V  IEK
Sbjct: 108 DSIRKNEHLIKDKIVLDVGCGTGILSFFAATHGAKHVYSIEK 149


>gi|19704929|ref|NP_602424.1| ribosomal protein L11 methyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|38605367|sp|Q8R6G7|PRMA_FUSNN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|19712826|gb|AAL93723.1| Ribosomal protein L11 methyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 312

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---ISSQHPNRLEIIQDDA 104
             +VI+IG G G L      LGA +V   + D+    + K+   +++   N +++++ + 
Sbjct: 174 NKSVIDIGTGSGILMIAGKILGAGEVYGTDIDEFSMEVAKENLILNNISLNDVKLLKGNL 233

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLL--FNWISADTWPPFWESLTLLFQKEV 158
           L+V   K F+I     ++ N+  +I  +LL    +I  +     +  +      EV
Sbjct: 234 LEVIENKKFDI-----VVCNILADILVKLLDEIKYILKENSIVLFSGIIEDKLNEV 284


>gi|157828717|ref|YP_001494959.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|157801198|gb|ABV76451.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 299

 Score = 35.9 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 29/69 (42%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L ++ E+     G + ++   G G  ++ +L      V  +++D       ++I   +  
Sbjct: 2   LNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQNYGE 61

Query: 96  RLEIIQDDA 104
           R + ++ + 
Sbjct: 62  RFDFVETNF 70


>gi|325473182|gb|EGC76378.1| hypothetical protein HMPREF9353_02571 [Treponema denticola F0402]
          Length = 235

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFP----ILKDISSQHPNRLEII 100
            D   +IEIG G G  T  +      K  + +E    F      +L +I  +  N L II
Sbjct: 61  NDNPVIIEIGFGMGTATAQIAEDNPDKNYLGVEV---FKAGVGKLLGEIEEKKLNNLRII 117

Query: 101 QDDALKVDFEKFFNIS 116
           + DA++V      N S
Sbjct: 118 EHDAIEVLENMINNES 133


>gi|298292265|ref|YP_003694204.1| Cyclopropane-fatty-acyl-phospholipid synthase [Starkeya novella DSM
           506]
 gi|296928776|gb|ADH89585.1| Cyclopropane-fatty-acyl-phospholipid synthase [Starkeya novella DSM
           506]
          Length = 405

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-- 93
           L+ IA       G+ V EIG+G G L   L  LG   V  I    +     K  +     
Sbjct: 163 LRHIAAKLKLEPGMRVAEIGSGWGALAIYLAKLGVH-VTAINVATEQLAESKKRAQAAGV 221

Query: 94  PNRLEIIQDD 103
            +R+   + D
Sbjct: 222 ADRITFFERD 231


>gi|281212537|gb|EFA86697.1| hypothetical protein PPL_00499 [Polysphondylium pallidum PN500]
          Length = 919

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95
           +++ +      G   I+   G G  T  +L       VI  ++D   F + K +  ++ +
Sbjct: 612 REVIDRLRLKPGSCYIDCTFGLGGHTTGILDRQPDCYVIAFDRDPHVFELTKHLRQKYKD 671

Query: 96  RLEIIQDDALKV 107
           RL  I  +  ++
Sbjct: 672 RLITIHGEFSRM 683


>gi|302892321|ref|XP_003045042.1| hypothetical protein NECHADRAFT_42914 [Nectria haematococca mpVI
           77-13-4]
 gi|256725967|gb|EEU39329.1| hypothetical protein NECHADRAFT_42914 [Nectria haematococca mpVI
           77-13-4]
          Length = 478

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI---SSQHP 94
           +  + +  L    V+EIG G G+     +     +V  +   ++   IL +    ++   
Sbjct: 224 RFIDGARILSTDHVLEIGTGWGSFAIEAVKRTGCRVTSLTLSKE-QKILAEERIDAAGFS 282

Query: 95  NRLEIIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRL--LFNWISADTWPPFWESL 150
           +++E+   D  AL V    +  I S   + A     + T    +   +  D     ++ +
Sbjct: 283 DKIEVKLMDYRALPVPENPYDKIVSIEMLEAVGQEYLATYFSCIDKLLKRDGGVAVFQCI 342

Query: 151 TL 152
           T+
Sbjct: 343 TM 344


>gi|237810344|ref|YP_002894795.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei MSHR346]
 gi|237505926|gb|ACQ98244.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei MSHR346]
          Length = 469

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE  G+ DG+ V++  A PG  T  +L L   +V+ +E D    P + +  ++     ++
Sbjct: 269 AEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADV 328

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-----FNWISADTWPPFW 147
              DA   D  ++ +     R++A++P +  + ++       W+      P  
Sbjct: 329 RVGDA--ADPAQWHDGRPFDRVLADVPCS-ASGIVRRHPDIRWLRRAADIPAL 378


>gi|258510692|ref|YP_003184126.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477418|gb|ACV57737.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 449

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-----DQQFFPILKDI 89
             +    +   VI+   G G +T +L +  AR V V E      D +    L  +
Sbjct: 295 VRAVEVRETDVVIDAYCGIGAMTLLLASHAARAVGVEEVEDAIADARANAKLNRV 349


>gi|213962037|ref|ZP_03390302.1| methyltransferase small [Capnocytophaga sputigena Capno]
 gi|213955390|gb|EEB66707.1| methyltransferase small [Capnocytophaga sputigena Capno]
          Length = 234

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 49  ITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDAL 105
            ++++IGAG G L  ML     A  +  +E D+  +    +     P  +RL        
Sbjct: 36  QSILDIGAGTGLLALMLAQRCDALTIDAVEIDEHAYIECTENFEASPWGDRLFCYHASF- 94

Query: 106 KVDFEKFFNISSPI-RIIANLPYN 128
               E F  +  P   II+N P+ 
Sbjct: 95  ---EEFFTEMDEPYDLIISNPPFY 115


>gi|198282338|ref|YP_002218659.1| type 11 methyltransferase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198246859|gb|ACH82452.1| Methyltransferase type 11 [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 202

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 23/189 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
             + G   GITV+++  G G  T  L   +   +++  + D+Q       + +   N   
Sbjct: 32  IRALGVKPGITVLDLCCGDGYFTAALARQVEDGRILGFDLDEQMLAAAASVCAGLEN-CT 90

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR-LLFNWISADTWPPFWESLTLLFQKE 157
            +Q DA+ +   +         ++AN  + +  + +L   I+    P    ++       
Sbjct: 91  FLQGDAMALH--RLLPEPVDYCLMANTFHGVPEQTVLAREIARVLKPGGLFAVV------ 142

Query: 158 VGERITAQKNSPHYGRLSVLTGWRT-KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP 216
                 A+          VL   R  +  +       V      V  + +     +   P
Sbjct: 143 ---NWHARPREET----PVLGQARGPRTELRMT-PEQV---RAVVEPSGLRLDRVVELSP 191

Query: 217 CCLESLKKI 225
               +L ++
Sbjct: 192 YHYGALFRL 200


>gi|189238201|ref|XP_968451.2| PREDICTED: similar to CG9666 CG9666-PA [Tribolium castaneum]
          Length = 296

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102
           G + G  V ++G G G L+     L A  V+  E D+      ++         ++ +Q 
Sbjct: 133 GDIGGKFVADLGCGCGALSIGAAVLDASLVVGFEIDEDALGTFQENVEDQDVGNIDCVQC 192

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D +K+   +F        +I N P+
Sbjct: 193 DVVKMMPNRFHKTFDT--VIMNPPF 215


>gi|167917035|ref|ZP_02504126.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei BCC215]
          Length = 469

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE  G+ DG+ V++  A PG  T  +L L   +V+ +E D    P + +  ++     ++
Sbjct: 269 AEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADV 328

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-----FNWISADTWPPFW 147
              DA   D  ++ +     R++A++P +  + ++       W+      P  
Sbjct: 329 RVGDA--ADPAQWHDGRPFDRVLADVPCS-ASGIVRRHPDIRWLRRAADIPAL 378


>gi|157148287|ref|YP_001455606.1| protein-L-isoaspartate O-methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|166220556|sp|A8ANV7|PIMT_CITK8 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|157085492|gb|ABV15170.1| hypothetical protein CKO_04104 [Citrobacter koseri ATCC BAA-895]
          Length = 208

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQL 162


>gi|270008699|gb|EFA05147.1| hypothetical protein TcasGA2_TC015264 [Tribolium castaneum]
          Length = 212

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102
           G + G  V ++G G G L+     L A  V+  E D+      ++         ++ +Q 
Sbjct: 49  GDIGGKFVADLGCGCGALSIGAAVLDASLVVGFEIDEDALGTFQENVEDQDVGNIDCVQC 108

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D +K+   +F        +I N P+
Sbjct: 109 DVVKMMPNRFHKTFDT--VIMNPPF 131


>gi|30022391|ref|NP_834022.1| ribosomal protein L11 methyltransferase [Bacillus cereus ATCC
           14579]
 gi|218230809|ref|YP_002369121.1| ribosomal protein L11 methyltransferase [Bacillus cereus B4264]
 gi|228960580|ref|ZP_04122228.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229129592|ref|ZP_04258561.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|229152514|ref|ZP_04280705.1| Ribosomal protein L11 methyltransferase [Bacillus cereus m1550]
 gi|38605209|sp|Q818F1|PRMA_BACCR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710053|sp|B7HCT8|PRMA_BACC4 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|29897949|gb|AAP11223.1| Ribosomal protein L11 methyltransferase [Bacillus cereus ATCC
           14579]
 gi|218158766|gb|ACK58758.1| ribosomal protein L11 methyltransferase [Bacillus cereus B4264]
 gi|228630945|gb|EEK87583.1| Ribosomal protein L11 methyltransferase [Bacillus cereus m1550]
 gi|228653860|gb|EEL09729.1| Ribosomal protein L11 methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|228799093|gb|EEM46062.1| Ribosomal protein L11 methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 312

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84
              G  +I++G G G L+     LGA  V   + D     
Sbjct: 173 VQPGDNIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVE 212


>gi|126439349|ref|YP_001057209.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 668]
 gi|167908993|ref|ZP_02496084.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 112]
 gi|217424987|ref|ZP_03456483.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 576]
 gi|254295711|ref|ZP_04963168.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 406e]
 gi|126218842|gb|ABN82348.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 668]
 gi|157805800|gb|EDO82970.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 406e]
 gi|217392007|gb|EEC32033.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 576]
          Length = 469

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE  G+ DG+ V++  A PG  T  +L L   +V+ +E D    P + +  ++     ++
Sbjct: 269 AEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADV 328

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-----FNWISADTWPPFW 147
              DA   D  ++ +     R++A++P +  + ++       W+      P  
Sbjct: 329 RVGDA--ADPAQWHDGRPFDRVLADVPCS-ASGIVRRHPDIRWLRRAADIPAL 378


>gi|53717766|ref|YP_106752.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
 gi|53724953|ref|YP_101986.1| sun protein [Burkholderia mallei ATCC 23344]
 gi|67642457|ref|ZP_00441213.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei GB8 horse 4]
 gi|121599506|ref|YP_994096.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei SAVP1]
 gi|124385742|ref|YP_001028242.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei NCTC 10229]
 gi|126451630|ref|YP_001064449.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1106a]
 gi|167003288|ref|ZP_02269077.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei PRL-20]
 gi|167717523|ref|ZP_02400759.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei DM98]
 gi|167813639|ref|ZP_02445319.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 91]
 gi|167843776|ref|ZP_02469284.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei B7210]
 gi|242316376|ref|ZP_04815392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1106b]
 gi|254176710|ref|ZP_04883367.1| sun protein [Burkholderia mallei ATCC 10399]
 gi|254197181|ref|ZP_04903604.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei S13]
 gi|254203667|ref|ZP_04910027.1| sun protein [Burkholderia mallei FMH]
 gi|254208643|ref|ZP_04914991.1| sun protein [Burkholderia mallei JHU]
 gi|254360303|ref|ZP_04976573.1| sun protein [Burkholderia mallei 2002721280]
 gi|52208180|emb|CAH34111.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
 gi|52428376|gb|AAU48969.1| sun protein [Burkholderia mallei ATCC 23344]
 gi|121228316|gb|ABM50834.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei SAVP1]
 gi|126225272|gb|ABN88812.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1106a]
 gi|147745179|gb|EDK52259.1| sun protein [Burkholderia mallei FMH]
 gi|147750519|gb|EDK57588.1| sun protein [Burkholderia mallei JHU]
 gi|148029543|gb|EDK87448.1| sun protein [Burkholderia mallei 2002721280]
 gi|160697751|gb|EDP87721.1| sun protein [Burkholderia mallei ATCC 10399]
 gi|169653923|gb|EDS86616.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei S13]
 gi|238523614|gb|EEP87051.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei GB8 horse 4]
 gi|242139615|gb|EES26017.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1106b]
 gi|243061145|gb|EES43331.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           mallei PRL-20]
          Length = 469

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE  G+ DG+ V++  A PG  T  +L L   +V+ +E D    P + +  ++     ++
Sbjct: 269 AEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADV 328

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-----FNWISADTWPPFW 147
              DA   D  ++ +     R++A++P +  + ++       W+      P  
Sbjct: 329 RVGDA--ADPAQWHDGRPFDRVLADVPCS-ASGIVRRHPDIRWLRRAADIPAL 378


>gi|134291319|ref|YP_001115088.1| cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           vietnamiensis G4]
 gi|134134508|gb|ABO58833.1| Cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           vietnamiensis G4]
          Length = 405

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 30  LLDLNILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           L D    K  +I  + G   G+ V+EIG G G         G R V  +   QQ + + +
Sbjct: 170 LADAQAAKYQRIVATLGLRAGMRVLEIGCGWGGFAVHAARQGVR-VHGVTISQQQYSLAR 228

Query: 88  DISSQ--HPNRLEIIQDDALKVD 108
           +  ++    + + I   D   VD
Sbjct: 229 ERVAREGLADLVTIELRDYRDVD 251


>gi|332291489|ref|YP_004430098.1| methyltransferase small [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169575|gb|AEE18830.1| methyltransferase small [Krokinobacter diaphorus 4H-3-7-5]
          Length = 253

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 49  ITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107
            ++++IG G G +  ML     A  V  +E D   +    D           +  D L  
Sbjct: 40  DSILDIGTGTGVIALMLAQRSDAMTVDAVELDDSAYEQAADNFENS------VWGDRLFC 93

Query: 108 DFEKFFNISSPI-----RIIANLPYNIGT 131
                +  ++ I      I+ N P+ + T
Sbjct: 94  YHAHLYEFAAEIDDEYDLIVCNPPFYMET 122


>gi|323453506|gb|EGB09377.1| hypothetical protein AURANDRAFT_11801 [Aureococcus anophagefferens]
          Length = 411

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKDISSQHP 94
           L  + + +G  DG  V+EIG G G+L             + I   ++     +   ++ P
Sbjct: 177 LDALIDKAGVADGDRVLEIGCGWGSLALRCCERFPNVDYVAITISKEQLAEARARVAKAP 236


>gi|315045414|ref|XP_003172082.1| lovastatin nonaketide synthase [Arthroderma gypseum CBS 118893]
 gi|311342468|gb|EFR01671.1| lovastatin nonaketide synthase [Arthroderma gypseum CBS 118893]
          Length = 3973

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 30   LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI---EKDQQFFPIL 86
            +++  I + +++ +     + ++EIGAG G  T+ +L             +    FF   
Sbjct: 1385 IVNEYIARMVSQITHRYPRMNILEIGAGTGGSTRRILPRLGSAFSTYTYTDISAGFFGAA 1444

Query: 87   KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124
            +D    + +R+     D  K    + F   S   +IA+
Sbjct: 1445 QDRFKDYADRMIFKTFDMTKTPASQGFIEGSYDLVIAS 1482


>gi|311109371|ref|YP_003982224.1| hypothetical protein AXYL_06216 [Achromobacter xylosoxidans A8]
 gi|310764060|gb|ADP19509.1| hypothetical protein AXYL_06216 [Achromobacter xylosoxidans A8]
          Length = 395

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT------LGARKVIVIEKDQQFFPILKD 88
           + ++ A+        TV+E GAG G L + +L       L   + +++E          +
Sbjct: 91  LARQAAQVLRQTQTETVLEFGAGTGALAEGVLRELDAMGLAQTRYLILEVSADLRARQAE 150

Query: 89  ISSQHPNRLEIIQDDAL 105
             +   +R++ +  DAL
Sbjct: 151 RLAAFGDRVQWL--DAL 165


>gi|288803258|ref|ZP_06408692.1| methyltransferase [Prevotella melaninogenica D18]
 gi|288334299|gb|EFC72740.1| methyltransferase [Prevotella melaninogenica D18]
          Length = 176

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI-IQDDALKVDFEKFFN 114
           AG G+++  LL+ G ++VI +EKD+     +     +      I I+ D  +        
Sbjct: 52  AGTGSISLELLSRGCQQVISVEKDRDHARFISQCMEKLGTDEHILIKGDVFRFLKSCHQK 111

Query: 115 ISSPIRIIANLPYNI 129
                 I A+ PY +
Sbjct: 112 FD---LIFADPPYAL 123


>gi|288929874|ref|ZP_06423717.1| SAM-dependent methyltransferase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288328975|gb|EFC67563.1| SAM-dependent methyltransferase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 259

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/70 (11%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +  ++ E+    +   V+E   G G   ++ +         +E +++    ++     + 
Sbjct: 30  LTAQMLEAMNINETDDVVEFAPGLGQTARLTVAHKPHSYTAVELNEEAASRVRHNV--NY 87

Query: 95  NRLEIIQDDA 104
             + ++  DA
Sbjct: 88  ANMRVVAADA 97


>gi|282859295|ref|ZP_06268408.1| ribosomal protein L11 methyltransferase [Prevotella bivia
           JCVIHMP010]
 gi|282587920|gb|EFB93112.1| ribosomal protein L11 methyltransferase [Prevotella bivia
           JCVIHMP010]
          Length = 289

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            L    V++ G G G L+ +   LGA++VI  + D+         ++ H   +  +  D 
Sbjct: 149 DLSDKRVLDCGCGTGILSIVSAKLGAKEVISYDIDEWSV-----KNAMHNAAINAVSIDV 203

Query: 105 LKVDFEKFFNISSPIRII-ANLPYNI 129
           L+ D +   ++     I+ AN+  NI
Sbjct: 204 LEGDKKVLSHVCGVFDIVLANINRNI 229


>gi|268326445|emb|CBH40033.1| conserved hypothetical protein, SAM-dependent methyltransferase
           type 11 family [uncultured archaeon]
          Length = 274

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L  +           ++EIGAGPG    +      +K   +E  +     ++  + +  
Sbjct: 51  VLNTLVRYDALNSDSEILEIGAGPGTF-VIPFARKVKKFTAVEPAKGMAEKIRRNAKEAE 109

Query: 95  -NRLEIIQ 101
            +  EII 
Sbjct: 110 IDNFEIIN 117


>gi|241258797|ref|YP_002978681.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240863267|gb|ACS60930.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 294

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +    G  ++ +GAG G  + ++  L   + KV  IE + +     K   + +PN + ++
Sbjct: 101 AAPRAGEHIVHVGAGAGYYSAIMAKLVGASGKVTAIEFEPELAARAKANLAPYPN-VSVV 159

Query: 101 QDD 103
             D
Sbjct: 160 PGD 162


>gi|157813764|gb|ABV81627.1| putative protein arginine N-methyltransferase 1 [Cydia pomonella]
          Length = 244

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G  V++IG G G L+      GA KVI +E         + I  +++  + +EII+
Sbjct: 19  HLFKGKIVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLDDVIEIIK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|257076758|ref|ZP_05571119.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Ferroplasma acidarmanus fer1]
          Length = 396

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 31  LDLNILKKIAESS-----GSLDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFP 84
            + NI KK             +G T+ ++G+G G++     L      +  IEKD+    
Sbjct: 221 KNNNITKKEIREISISELDLNNGDTMWDVGSGSGSVAIYASLINPDGNIFAIEKDKALCN 280

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122
            + +   +    + II  +A     E    I  P  + 
Sbjct: 281 FIDENMRKFSTDINIINGEA----PEALDGIPDPEAVF 314


>gi|308813333|ref|XP_003083973.1| unnamed protein product [Ostreococcus tauri]
 gi|116055855|emb|CAL57940.1| unnamed protein product [Ostreococcus tauri]
          Length = 1592

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 36   LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
            +  I + +    G  V+EIG G G     ++      V  +
Sbjct: 1045 IDAIIDRADIQSGHRVLEIGCGWGTCAIRMVQRKKCHVTGL 1085


>gi|21220344|ref|NP_626123.1| precorrin-6Y C5,15-methyltransferase [Streptomyces coelicolor
           A3(2)]
 gi|14041580|emb|CAC38791.1| putative precorrin-6Y C5,15-methyltransferase [Streptomyces
           coelicolor A3(2)]
          Length = 410

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 32  DLNILKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           D  I K    +      G   G  V ++GAG G++      LGA  V  +E+       +
Sbjct: 229 DSMITKFEVRALALARLGPRPGDLVWDVGAGSGSVAVECARLGA-AVTAVERTPDGVGRV 287

Query: 87  KDISSQHPNRLEIIQDDA 104
           +  ++ H   L ++   A
Sbjct: 288 RANAAAHGVDLRVVHGAA 305


>gi|85714626|ref|ZP_01045613.1| NDP-hexose 3-C-methyltransferase TylCIII [Nitrobacter sp. Nb-311A]
 gi|85698511|gb|EAQ36381.1| NDP-hexose 3-C-methyltransferase TylCIII [Nitrobacter sp. Nb-311A]
          Length = 430

 Score = 35.9 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 14/82 (17%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
            + ++GQ       I   +A  +  + G  V++IG   G L   L +     ++    D 
Sbjct: 86  MRNHLGQ-------IANAVASRAAIVSGDVVLDIGCNDGTL---LKSYPMPDLVRAGID- 134

Query: 81  QFFPILKDISSQHPNRLEIIQD 102
              PI +  ++Q+P    I   
Sbjct: 135 ---PIARSFANQYPGEFRIHAG 153


>gi|330686115|gb|EGG97736.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis
           VCU121]
          Length = 312

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
                +VI++G G G L+     +G +++  ++ D+    + K+   ++   N +E +  
Sbjct: 171 VEPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVNVAKENFEKNHCLNAIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + E F
Sbjct: 231 NLLKDEKEHF 240


>gi|312114048|ref|YP_004011644.1| methyltransferase type 11 [Rhodomicrobium vannielii ATCC 17100]
 gi|311219177|gb|ADP70545.1| Methyltransferase type 11 [Rhodomicrobium vannielii ATCC 17100]
          Length = 240

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            ++  + G     +V +IGAG G   T++ L +   KV   + +      L + +  
Sbjct: 75  DEVVSALGLKGTESVADIGAGTGYFATRIALRVPEGKVFAADVEPDMVRYLGERAKA 131


>gi|262198515|ref|YP_003269724.1| protein-L-isoaspartate O-methyltransferase [Haliangium ochraceum
           DSM 14365]
 gi|262081862|gb|ACY17831.1| protein-L-isoaspartate O-methyltransferase [Haliangium ochraceum
           DSM 14365]
          Length = 226

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK----- 87
             I+  ++E  G   G  V+EIG G G  T +L  LGA +V  IE      P L      
Sbjct: 71  PYIVAAMSERLGVAPGARVLEIGTGSGYQTAVLAELGA-EVFSIE----LVPELSAGAAA 125

Query: 88  DISSQHPNRLEIIQDDALKVDFEK 111
            +++    R+ +   D  +   E 
Sbjct: 126 VLAALGYQRVHLRVGDGYRGWPEA 149


>gi|229819569|ref|YP_002881095.1| Methyltransferase type 12 [Beutenbergia cavernae DSM 12333]
 gi|229565482|gb|ACQ79333.1| Methyltransferase type 12 [Beutenbergia cavernae DSM 12333]
          Length = 257

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPI--LKDISSQ 92
           L +   +  S  G  V++IG G G  L + L      + + ++ D +          +  
Sbjct: 26  LARFVAAGLSEPGALVVDIGCGWGELLLRTLAAAPTARGLGLDLDAEAVAHGTATAAARG 85

Query: 93  HPNRLEIIQDDA 104
             +R+E++  DA
Sbjct: 86  LADRVELVAGDA 97


>gi|220918659|ref|YP_002493963.1| Methyltransferase type 11 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956513|gb|ACL66897.1| Methyltransferase type 11 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 242

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +  ++A  +G   G  V ++GAG G+L + L   G R V  +E  +     L D  +   
Sbjct: 19  LADRLAALAG-GPGARVADLGAGTGHLARALAARGLR-VAAVEPARAMLDALADAPASAG 76

Query: 95  NRLEIIQDDA 104
             +E +   A
Sbjct: 77  PAVEPVHAAA 86


>gi|182418255|ref|ZP_02949551.1| putative methyltransferase type 11 [Clostridium butyricum 5521]
 gi|237668608|ref|ZP_04528592.1| methyltransferase type 11 [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377893|gb|EDT75436.1| putative methyltransferase type 11 [Clostridium butyricum 5521]
 gi|237656956|gb|EEP54512.1| methyltransferase type 11 [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 186

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 41/149 (27%), Gaps = 12/149 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD------QQFFPILKD 88
           I + I +     +   V+E+  G G L Q +          +  D      Q+   +L +
Sbjct: 38  IAQNIIKELDIKETDKVLEVACGAGGLAQYIHCAQY-----VGIDYSETLVQRHIELLNN 92

Query: 89  -ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            +     N L        KV     F+    +         +           D      
Sbjct: 93  SVLHGEANNLIFKDKSFDKVFCFGAFHYFPNLEYATEAINELKRVAKEAVFIGDLPMNSH 152

Query: 148 ESLTLLFQKEVGERITAQKNSPHYGRLSV 176
               LL+ K+  +         +  R +V
Sbjct: 153 RDTHLLYTKDFFDGWKITDGFYNPCRFNV 181


>gi|152992387|ref|YP_001358108.1| hypothetical protein SUN_0793 [Sulfurovum sp. NBC37-1]
 gi|151424248|dbj|BAF71751.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 459

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           + +I     S +   +I+IG G   L   LL  G   + +++   Q   I+K+      +
Sbjct: 286 IAQIKSHINSRE-DAIIDIGCGASFLVDELLQEGYSNITLLDVSGQALEIVKERLGALAD 344

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIA 123
           ++  +  D    +  K +       +  
Sbjct: 345 KVTYVCSDITTFETSKRYTFWHDRAVFH 372


>gi|149193761|ref|ZP_01870859.1| methyltransferase [Caminibacter mediatlanticus TB-2]
 gi|149135714|gb|EDM24192.1| methyltransferase [Caminibacter mediatlanticus TB-2]
          Length = 235

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 17/85 (20%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPI 85
           NFL D     KI +             G+  G     L     +K+ +I  D        
Sbjct: 48  NFLNDN---DKIVDL------------GSSTGTFLIELAKKSNKKLNLIGIDNSPAMIKR 92

Query: 86  LKDISSQHPNRLEIIQDDALKVDFE 110
             + +      ++ I+ D LK + E
Sbjct: 93  ANNKAKAFGVDVKFIEADFLKYNLE 117


>gi|291300341|ref|YP_003511619.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
 gi|290569561|gb|ADD42526.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
          Length = 270

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           ++ G   G+  +E+G G G++   +        +VI ++ + +             + L 
Sbjct: 40  DAVGVRAGMRCLELGPGGGSIAHWMCDRVGPQGEVIAVDLNPRHVE--------PADNLR 91

Query: 99  IIQDDA 104
           I+Q D 
Sbjct: 92  IVQADI 97


>gi|316934224|ref|YP_004109206.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodopseudomonas palustris DX-1]
 gi|315601938|gb|ADU44473.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodopseudomonas palustris DX-1]
          Length = 221

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +FLL+  +  ++ +++       V+ +G   G +   +    A +V     D+     ++
Sbjct: 63  HFLLNPIMTARLLQAAEIERDDRVLVVGCPTGYI-AAVAARLATRVTTTIDDEALAQRIR 121

Query: 88  DISSQ 92
                
Sbjct: 122 STLPA 126


>gi|225387762|ref|ZP_03757526.1| hypothetical protein CLOSTASPAR_01532 [Clostridium asparagiforme
           DSM 15981]
 gi|225046137|gb|EEG56383.1| hypothetical protein CLOSTASPAR_01532 [Clostridium asparagiforme
           DSM 15981]
          Length = 318

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEII 100
               G  ++++G G G L    L LGA++V   + D+     + +    +     R  ++
Sbjct: 169 AVDSGTKLLDVGTGSGILGITALKLGAKEVWGTDLDENAITAVGENLEANGISGERFHVL 228

Query: 101 QDDAL 105
           Q + L
Sbjct: 229 QGNIL 233


>gi|239813984|ref|YP_002942894.1| hypothetical protein Vapar_0977 [Variovorax paradoxus S110]
 gi|239800561|gb|ACS17628.1| protein of unknown function DUF185 [Variovorax paradoxus S110]
          Length = 360

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT------LGARKVIVIEK 78
            GQ       +  ++AE+       TV E GAG G L   LL        G  +  +++ 
Sbjct: 63  FGQ------ALAAQVAEALEKTGTDTVWEFGAGTGALAVQLLHALDEIGRGDVRYRIVDL 116

Query: 79  DQQFFPILKDISSQHPNRLE 98
                   +   +++ +R+E
Sbjct: 117 SGTLRERQQQALARYTDRVE 136


>gi|163792422|ref|ZP_02186399.1| Predicted O-methyltransferase [alpha proteobacterium BAL199]
 gi|159182127|gb|EDP66636.1| Predicted O-methyltransferase [alpha proteobacterium BAL199]
          Length = 253

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 12/102 (11%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           +D  +L   A S        V+++G G G     +L       V+ +E+D     + +D 
Sbjct: 34  VDPVLL---AASVPVRAEQRVLDLGCGAGAVFLCLLARFPQLSVVAVERDPTMAGLARDN 90

Query: 90  SSQH--PNRLEIIQDD--ALKVDFEKFFNISSPIRIIANLPY 127
            +++    R  ++  D  AL   +E         +++ N P+
Sbjct: 91  VARNGVAERATVVTADLSALPASWEMAAFD----QVVTNPPF 128


>gi|149037976|gb|EDL92336.1| rCG51381 [Rattus norvegicus]
          Length = 282

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 28  NF--LLDLN---ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           +F  L D     I     + +  L   TV++IGAG G L+      GA  V   E  +  
Sbjct: 153 HFIMLNDTKRNEIYNAAIQKAVRLGSKTVLDIGAGTGILSMFAKKAGAHSVYACELSKTM 212

Query: 83  FPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           + +  D+ +   N++E    D +++   K  ++  P  I
Sbjct: 213 YELACDVVAA--NKME----DGIRLLHMKSLDLEIPKHI 245


>gi|115437822|ref|XP_001217908.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114188723|gb|EAU30423.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 367

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +     G+ +++IG G G +TQ     G   V  +         ++ + ++     E+  
Sbjct: 165 ALVLKPGMRLLDIGGGWGGVTQYCGARGVH-VTTLTIAPDSARYIQRLIAEKDLPGEVFL 223

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYN 128
            D L       +N +    +I ++P  
Sbjct: 224 QDFLVHQPTALYNHAVIYGVIEHIPNY 250


>gi|107021997|ref|YP_620324.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia cenocepacia AU
           1054]
 gi|116688941|ref|YP_834564.1| tRNA (guanine-N(7))-methyltransferase [Burkholderia cenocepacia
           HI2424]
 gi|123245203|sp|Q1BYF4|TRMB_BURCA RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|152112979|sp|A0K594|TRMB_BURCH RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|105892186|gb|ABF75351.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia cenocepacia AU
           1054]
 gi|116647030|gb|ABK07671.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia cenocepacia
           HI2424]
          Length = 255

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        ++EIG G G  T  +     +   + +E  +     +LK I  Q  + + 
Sbjct: 74  DAIFGRSAPRILEIGFGMGASTAEIAAHRPSDDFLGVEVHEPGVGALLKLIGEQGLSNIR 133

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V                       +    +    D W         L Q  +
Sbjct: 134 IIQHDAVEVLEHMIAP---------------ASLDGVHIFFPDPWHKARHHKRRLIQPPL 178

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
              + ++     Y   +       +
Sbjct: 179 VAHLASRLKPGAYLHCATDWQNYAE 203


>gi|71004654|ref|XP_756993.1| hypothetical protein UM00846.1 [Ustilago maydis 521]
 gi|46096687|gb|EAK81920.1| hypothetical protein UM00846.1 [Ustilago maydis 521]
          Length = 561

 Score = 35.9 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGN 60
            N L+ I + +    G  V+EIG G G+
Sbjct: 295 QNKLRLIIKRANIRRGDRVLEIGTGWGS 322


>gi|303248880|ref|ZP_07335129.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
 gi|302489749|gb|EFL49682.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
          Length = 191

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEII 100
             +G T ++IG GPG  T  L  L  R  +VI ++  ++   +L+  + +      II
Sbjct: 42  VREGDTAVDIGCGPGFFTLPLARLVGRNGRVIAVDLQEEMLGMLRRRAERAGLASRII 99


>gi|301783181|ref|XP_002927011.1| PREDICTED: UPF0431 protein C1orf66 homolog, partial [Ailuropoda
           melanoleuca]
          Length = 476

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 85/274 (31%), Gaps = 48/274 (17%)

Query: 19  IIPKK-----YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           + PKK      +G        ++KK    S       V++IG+G G+L++ +       V
Sbjct: 132 VRPKKQHEIRRLG-------ELVKK---LSDLTGCTQVVDIGSGQGHLSRFMSLGLGLMV 181

Query: 74  IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
             IE DQ+     + +  +    LE                     +++   P +     
Sbjct: 182 KSIEGDQRLVERAQRLDQELLQALE--------------KEEKRHPQVVHAGPRH-SPHH 226

Query: 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV-LTGWRTKATMMFDISP 192
           +  W+                 +     +         G LSV L    ++  ++   S 
Sbjct: 227 VVRWVEPTALCEELLLPLETLPRSGARLLL--TGLHACGDLSVTLLRHFSRPEVVALASV 284

Query: 193 HVFF-----PSPKVTSTVIHFIPHLNPI--------PCCLESLKKITQEAFGKRRKTLRQ 239
              +     P     S  +  +P                 E  +++ +     R    R 
Sbjct: 285 GCCYMKLSDPGGYPLSQWVAGLPSCELPYRLREGACHALEEYAERLQKAGPALRTHCYRA 344

Query: 240 SLKRL--GGENLLHQAGIETNLRAENLSIEDFCR 271
           +L+ +  G    L + G++   R   L IE++ +
Sbjct: 345 ALETVIRGARPELRRPGVQGIPRVHELKIEEYVQ 378


>gi|288905237|ref|YP_003430459.1| methyltransferase [Streptococcus gallolyticus UCN34]
 gi|306831308|ref|ZP_07464468.1| protein-(glutamine-N5) methyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325978213|ref|YP_004287929.1| methyltransferase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288731963|emb|CBI13528.1| putative methyltransferase [Streptococcus gallolyticus UCN34]
 gi|304426544|gb|EFM29656.1| protein-(glutamine-N5) methyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178141|emb|CBZ48185.1| methyltransferase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 276

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
            S   + V++IG G G +   L       +V   +       + K+ + ++   L +IQ 
Sbjct: 106 NSRADLRVLDIGTGSGAIAISLKAARPNWQVTASDISADALQLAKENALKNQVELTLIQS 165

Query: 103 DALKVDFEKFFNISSPIRIIANLPY 127
           D      E+F        II+N PY
Sbjct: 166 DVFSQITERF------DMIISNPPY 184


>gi|316932163|ref|YP_004107145.1| type 12 methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315599877|gb|ADU42412.1| Methyltransferase type 12 [Rhodopseudomonas palustris DX-1]
          Length = 245

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 14/160 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQH 93
            ++        G TV+E+G G G NL Q        K   ++   +     I     +  
Sbjct: 56  DQLIAELQPKAGETVLEVGCGTGRNLIQAATRYHEAKFFGLDVSTEMLTSAISSIEGAGL 115

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
             R+++   DA     +  F  +     +  + Y++             W    +     
Sbjct: 116 MARVKVAHGDATAFTAQAVFGQAVAFDHV-MISYSLS--------MIPDWTAVIDRAVAN 166

Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
             K  G+           G  SV      +   +FD++P 
Sbjct: 167 L-KPGGKLHIVDFGD-QRGLPSVARNLLRRWLTLFDVTPR 204


>gi|283851836|ref|ZP_06369113.1| Methyltransferase type 11 [Desulfovibrio sp. FW1012B]
 gi|283572752|gb|EFC20735.1| Methyltransferase type 11 [Desulfovibrio sp. FW1012B]
          Length = 252

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
          +  ++A    +  G  V+EIGAG G LT+ LL       + ++        
Sbjct: 26 VAARLAALCPATLGAPVLEIGAGSGLLTRALLPRTRGPYLALDLAPGMLAR 76


>gi|238026437|ref|YP_002910668.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia glumae BGR1]
 gi|237875631|gb|ACR27964.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Burkholderia glumae BGR1]
          Length = 260

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 17/140 (12%)

Query: 46  LDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
            +   ++EIG G G  T  +         + +E  +     +LK I  Q  + + IIQ D
Sbjct: 84  REAPRILEIGFGMGASTAEIAAHRRDDDFLGVEVHEPGVGALLKLIGEQGLSNIRIIQHD 143

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           A++V                       +    +    D W         L Q     ++ 
Sbjct: 144 AVEVLENMLAPD---------------SLDGVHIFFPDPWHKARHHKRRLIQPPFVAQLV 188

Query: 164 AQKNSPHYGRLSVLTGWRTK 183
           ++     Y   +       +
Sbjct: 189 SRLKPGAYLHCATDWQNYAE 208


>gi|208779007|ref|ZP_03246353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida
           FTG]
 gi|208744807|gb|EDZ91105.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida
           FTG]
          Length = 449

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           ++  ++++  E     +  ++I++  G GN T  + +  A+ VI +E +       K+ +
Sbjct: 285 INKKMIQRAIELLDISENDSIIDLFCGLGNFTLPI-SQHAKTVIGVEGEPTMVKRAKETA 343


>gi|195574093|ref|XP_002105024.1| GD21268 [Drosophila simulans]
 gi|194200951|gb|EDX14527.1| GD21268 [Drosophila simulans]
          Length = 317

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQH 93
           +  I        G  V+E G G G+L+   L        +   D  +      +D   +H
Sbjct: 100 ISMIIHQLEVRPGSVVVESGTGSGSLSHYFLRALKPTGHLHTFDFHEARADQARDEFRRH 159

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-----TWPPF 146
              + + +   D   + F    +  +    +     ++     F  +        ++ P 
Sbjct: 160 GIADFVTVYHRDVCNLGFGAELDGKADAVFLDLPAPDLAVPHAFKALKLSGGRFCSFSPC 219

Query: 147 WESLTLLFQK 156
            E      Q+
Sbjct: 220 IEQSQRCIQE 229


>gi|119477214|ref|ZP_01617450.1| hypothetical protein GP2143_02789 [marine gamma proteobacterium
           HTCC2143]
 gi|119449577|gb|EAW30815.1| hypothetical protein GP2143_02789 [marine gamma proteobacterium
           HTCC2143]
          Length = 333

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           K IAE  G     +V++ G G G L       GA+KVI +++   F    KDI+ Q  N 
Sbjct: 39  KSIAEVVG--PEQSVLDFGCGTGILAMFAARSGAKKVIAVDRSP-FIKTAKDIAQQ--NG 93

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIA 123
            E I  D    D +          I++
Sbjct: 94  FENI--DFYHDDDQSLQLDEKVDVIVS 118


>gi|56476599|ref|YP_158188.1| hypothetical protein ebA2105 [Aromatoleum aromaticum EbN1]
 gi|56312642|emb|CAI07287.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 393

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            + G      ++E  AG G+L + L       V  +E D       + ++ +   +  ++
Sbjct: 113 AAHGHAAQAPLLEWCAGKGHLGRRLALADRVPVRSLELDPTLCEAAQRLAQRAGVQQTVL 172

Query: 101 QDDAL 105
             DAL
Sbjct: 173 CADAL 177


>gi|332703487|ref|ZP_08423575.1| spermine synthase [Desulfovibrio africanus str. Walvis Bay]
 gi|332553636|gb|EGJ50680.1| spermine synthase [Desulfovibrio africanus str. Walvis Bay]
          Length = 492

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 63  QMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIR 120
           + LL      K+ V+E D     + +     H + RL I+ +DA              + 
Sbjct: 298 RHLLAQNPDIKLDVVELDPGMTALARRWFDLHDDPRLRIVHEDARTFLQRT--EKKYDLA 355

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
            +     +         + A                     I  +       +L+ L   
Sbjct: 356 FVDVFNSHYAIPFHLATLEAAQSLRASLHDGGAAVINTISAIEGRPGQLLRAQLATLRQA 415

Query: 181 RTKATMMFDI 190
            T+  ++F +
Sbjct: 416 FTQV-LVFPV 424


>gi|332027973|gb|EGI68024.1| Protein arginine N-methyltransferase 8 [Acromyrmex echinatior]
          Length = 382

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
               G TV++IG G G L+      GA KVI IE         + I   +   N + I++
Sbjct: 94  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIGIEC-SNIVEYAEKIVEANNLSNVITILK 152

Query: 102 DDALKVDFEKFFNISSPIRII 122
               KV+     +    + II
Sbjct: 153 G---KVEEVSLPDGIEKVDII 170


>gi|322786722|gb|EFZ13091.1| hypothetical protein SINV_07585 [Solenopsis invicta]
          Length = 383

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
               G TV++IG G G L+      GA KVI IE         + I   +   N + I++
Sbjct: 95  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIGIEC-SNIVEYAEKIVEANNLSNVITILK 153

Query: 102 DDALKVDFEKFFNISSPIRII 122
               KV+     +    + II
Sbjct: 154 G---KVEEVSLPDGIEKVDII 171


>gi|307187153|gb|EFN72396.1| Protein arginine N-methyltransferase 8 [Camponotus floridanus]
          Length = 357

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
               G TV++IG G G L+      GA KVI IE         + I   +   N + I++
Sbjct: 69  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIGIEC-SNIVEYAEKIVEANNLSNVITILK 127

Query: 102 DDALKVDFEKFFNISSPIRII 122
               KV+     +    + II
Sbjct: 128 G---KVEEVSLPDGIEKVDII 145


>gi|298346779|ref|YP_003719466.1| tRNA methyltransferase complex GCD14 subunit [Mobiluncus curtisii
           ATCC 43063]
 gi|304389517|ref|ZP_07371480.1| SAM-dependent methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236840|gb|ADI67972.1| tRNA methyltransferase complex GCD14 subunit [Mobiluncus curtisii
           ATCC 43063]
 gi|304327327|gb|EFL94562.1| SAM-dependent methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 353

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILK 87
             +I        G  V+E G G G +T  LL     +  V   E    F  + +
Sbjct: 105 AAQIVMEGDIFPGANVVEAGVGSGAMTMSLLGAVGSSGHVTSFELRPDFAEVAR 158


>gi|292670870|ref|ZP_06604296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC
           43541]
 gi|292647491|gb|EFF65463.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC
           43541]
          Length = 465

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL--- 97
             +      TVI+   G G +T  L    ARKV  IE       IL    +   N +   
Sbjct: 310 AYADLHGTETVIDAYCGTGTITLFLAQR-ARKVYGIEI--VQPAILDARKNARDNHVKNA 366

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLP 126
           E I  DA  V    +     P  ++ + P
Sbjct: 367 EFIVGDATAVMPALYKQGIRPDVVVIDPP 395


>gi|291279755|ref|YP_003496590.1| hypothetical protein DEFDS_1373 [Deferribacter desulfuricans SSM1]
 gi|290754457|dbj|BAI80834.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 259

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 38  KIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79
           KIA       +   TV+E+G+G G L+ +    GA+KV   + D
Sbjct: 112 KIAARLLEEIVSDKTVLEVGSGSGILSILASKCGAKKVFACDND 155


>gi|302870565|ref|YP_003839202.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Micromonospora aurantiaca ATCC 27029]
 gi|302573424|gb|ADL49626.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Micromonospora aurantiaca ATCC 27029]
          Length = 409

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 9/76 (11%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQ----QFFPILKD 88
           I  ++ E +    G+TV+E+G+G  N    L  +     +V+ ++ D     +   +L++
Sbjct: 84  IQARMLEQADLAAGMTVLEVGSGGLN-AAYLAEIVGPQGRVVSVDIDPEVTDRAATLLEE 142

Query: 89  ISSQHPNRLEIIQDDA 104
             + + +R+ ++  DA
Sbjct: 143 --NGYGSRVRVLVADA 156


>gi|257870867|ref|ZP_05650520.1| ribosomal protein L11 methyltransferase [Enterococcus gallinarum
           EG2]
 gi|257805031|gb|EEV33853.1| ribosomal protein L11 methyltransferase [Enterococcus gallinarum
           EG2]
          Length = 313

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
                TV+++G G G L+     LGA +V   + D+      K+  + +P
Sbjct: 173 LRGEETVLDVGTGSGVLSIASRHLGANQVYAYDLDEVAVRAAKENMALNP 222


>gi|254292953|ref|YP_003058976.1| methyltransferase type 12 [Hirschia baltica ATCC 49814]
 gi|254041484|gb|ACT58279.1| Methyltransferase type 12 [Hirschia baltica ATCC 49814]
          Length = 207

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+EIG G G+ T +LL    +     +       I +D +        +   D 
Sbjct: 37  LNREQRVLEIGCGTGS-TALLLAGEVKHFTATDISGVMIEIGEDKAKDQG----VTNIDF 91

Query: 105 LKVDFEKFFNISSPIRII 122
           LK D            +I
Sbjct: 92  LKADVFDERLAPQSYDVI 109


>gi|223044395|ref|ZP_03614429.1| methyltransferase type 11 [Staphylococcus capitis SK14]
 gi|222442264|gb|EEE48375.1| methyltransferase type 11 [Staphylococcus capitis SK14]
          Length = 239

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I ++    +   ++++G G GNLT ML+ LG   VI ++       I    SS+    + 
Sbjct: 26  IVQTFSKRESNDILDLGCGTGNLTHMLVPLG--NVIGMDLSVDMLTIANQKSSE----VR 79

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
            ++ D    +  + FNI   I I  +    + +           +    +    LF    
Sbjct: 80  WLEGDMTSFELNQKFNI---ITIFCDSLNYLSSSKEVKETFNKVYQHLTDDGVFLFDVHT 136

Query: 159 GERITAQKNSPHY 171
             ++    N+  Y
Sbjct: 137 VHKMNTLFNNQSY 149


>gi|241123007|ref|XP_002403765.1| acid methyltransferase, putative [Ixodes scapularis]
 gi|215493522|gb|EEC03163.1| acid methyltransferase, putative [Ixodes scapularis]
          Length = 288

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLL---TLGARKVIVIEKDQQFFPILKDISSQ---HPNR 96
           SG  +    +++G GPGN+T+ +L       R+++ ++  +      ++  S      + 
Sbjct: 41  SGPTEDQQFLDLGCGPGNITRDVLLPQCPPCRRLVAVDSSEDMLKYARERFSHPKIVYDT 100

Query: 97  LEIIQDD 103
           L+I+ DD
Sbjct: 101 LDIVSDD 107


>gi|168182634|ref|ZP_02617298.1| O-methyltransferase family protein [Clostridium botulinum Bf]
 gi|237795994|ref|YP_002863546.1| O-methyltransferase family protein [Clostridium botulinum Ba4 str.
           657]
 gi|182674214|gb|EDT86175.1| O-methyltransferase family protein [Clostridium botulinum Bf]
 gi|229261153|gb|ACQ52186.1| O-methyltransferase family protein [Clostridium botulinum Ba4 str.
           657]
          Length = 218

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 43  SGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
                   ++E+G   G  ++   L + G   +  IE+D +   I K+   ++   ++++
Sbjct: 51  ISVKKPKKILELGTAIGYSSIFMSLSSKGECNITTIERDDKMIEIAKNNIEKYSFKDKIK 110

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP----FWESLTLLF 154
           IIQ D L++  +                YN         ++ D         +  +    
Sbjct: 111 IIQGDCLEILKDLEDKYDMIFMDAGKGHYNEFLPYCLKLLNKDGIIIADNVLFRGMVAND 170

Query: 155 QKEVGERITAQKNSPHY 171
           +  +  +IT  K    Y
Sbjct: 171 ELVIRRKITIVKRMRKY 187


>gi|119961856|ref|YP_949182.1| hypothetical protein AAur_3489 [Arthrobacter aurescens TC1]
 gi|119948715|gb|ABM07626.1| conserved hypothetical protein [Arthrobacter aurescens TC1]
          Length = 271

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-- 96
           I  +     G  ++E+ AG G +T+ LL LG R +  ++   +   +LK  +        
Sbjct: 48  ILAAVRKTSG-PILELAAGSGRITRPLLALG-RPLAAVDSSPEMLAMLKKKAGTKAFNPR 105

Query: 97  ---LEIIQDDALKVD 108
              LE+++ D  + +
Sbjct: 106 GVALELMEADMSRFE 120


>gi|111221498|ref|YP_712292.1| putative 3-demethylubiquinone-9 3-O-methyltransferase [Frankia alni
            ACN14a]
 gi|111149030|emb|CAJ60711.1| putative 3-demethylubiquinone-9 3-O-methyltransferase [Frankia alni
            ACN14a]
          Length = 1439

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 36   LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            L++         G  V+E G GPG  +  +   G   V  ++   +    L+  + +   
Sbjct: 1164 LRRAVRR-HLRPGGRVLEAGCGPGQFSVAMAARG-FAVEAVDWAPRAVERLRAAAPE--- 1218

Query: 96   RLEIIQDDALKVDFEK 111
             + + Q D  ++D   
Sbjct: 1219 -IRVWQGDVRRLDVPD 1233


>gi|19112556|ref|NP_595764.1| actin binding methyltransferase (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74676074|sp|O74386|YNVB_SCHPO RecName: Full=Uncharacterized methyltransferase C3H7.11
 gi|3417419|emb|CAA20307.1| actin binding methyltransferase (predicted) [Schizosaccharomyces
           pombe]
          Length = 248

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 29  FLLDLNILKKIAESSGSLDGI---TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFP 84
           F  D + L +  +    L      T++E+G G GNL   LL +    K+   +   +   
Sbjct: 34  FFKDRHWLDREFDCYFGLPDKLPLTILEVGCGVGNLVYPLLEVQPNLKIYCCDFSPRAID 93

Query: 85  ILKDISSQHPNRL-----EIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +K  S  + NR+     +I +D  L+V      +  + I +++ +P
Sbjct: 94  FVKKHSCYNENRVFPFVNDITEDSLLEVLGSACIDTLTAIFVLSAIP 140


>gi|77360962|ref|YP_340537.1| uridylyltransferase [Pseudoalteromonas haloplanktis TAC125]
 gi|91206749|sp|Q3IIZ7|GLND_PSEHT RecName: Full=[Protein-PII] uridylyltransferase; Short=PII
           uridylyl-transferase; AltName: Full=UTase; AltName:
           Full=Uridylyl-removing enzyme
 gi|76875873|emb|CAI87094.1| uridylyltransferase [Pseudoalteromonas haloplanktis TAC125]
          Length = 872

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 20/90 (22%)

Query: 4   NNKSHSLKTILS------HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG-- 55
           + ++ S+K  L         KI  KK   Q F  D NI  KI          ++IEI   
Sbjct: 747 SGRAQSIKRALEQALFEPRKKIRFKKNRSQRF-KDFNIKPKIVLRPHPRKDRSLIEIQAI 805

Query: 56  --AGPGNLTQ-------MLLTLGARKVIVI 76
              G   LT+        LL + A ++  +
Sbjct: 806 DIPGL--LTKIAEVFQAHLLHIHAARITTV 833


>gi|84496462|ref|ZP_00995316.1| hypothetical protein JNB_03045 [Janibacter sp. HTCC2649]
 gi|84383230|gb|EAP99111.1| hypothetical protein JNB_03045 [Janibacter sp. HTCC2649]
          Length = 333

 Score = 35.9 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI 85
           +I   +    G  V+E G G G L+  LL       K+   E+ + F  I
Sbjct: 96  QIVTFADIFPGAVVVEAGVGSGALSMSLLRAVGETGKLHSFERREDFAAI 145


>gi|321441963|gb|ADW85396.1| arg methyltransferase [Apoda biguttata]
          Length = 244

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLSDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|315640055|ref|ZP_07895180.1| ribosomal protein L11 methyltransferase [Enterococcus italicus DSM
           15952]
 gi|315484183|gb|EFU74654.1| ribosomal protein L11 methyltransferase [Enterococcus italicus DSM
           15952]
          Length = 321

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
              G TV+++G G G L+      GA++V   + D       ++    +P
Sbjct: 173 LRGGETVLDVGTGSGVLSIASKYYGAKEVHAFDLDSVAVAAAQENMDLNP 222


>gi|305682209|ref|ZP_07405013.1| RNA methyltransferase, RsmD family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658682|gb|EFM48185.1| RNA methyltransferase, RsmD family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 193

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDA- 104
              V+++ AG G L     + GA +V+++E D     +++  +    HPN ++++Q  A 
Sbjct: 44  DAVVLDLFAGSGALGLEAASRGAAEVVLVESDPHTCAVIRRNAEAVGHPN-VQVMQMAAS 102

Query: 105 --LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             +     K+F+      ++A+ PY++    +   + A
Sbjct: 103 AYVAQAPRKYFD-----MVLADPPYDLAPETVVEMLEA 135


>gi|298373616|ref|ZP_06983605.1| RNA methyltransferase, RsmD family [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274668|gb|EFI16220.1| RNA methyltransferase, RsmD family [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 177

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           NIL  I +  G      V+++ AG G+++   ++ GAR V  IE +      +K   ++ 
Sbjct: 34  NILDNIIDFDGIR----VLDLFAGTGSISYEFVSRGARSVTDIEMNTTQIDFIKKTCTKL 89

Query: 94  P-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
             + L + + D  K   +          + A+ PY +
Sbjct: 90  KIDNLHVYRSDVFKYIAKC---SERYDVVFADPPYQM 123


>gi|298247310|ref|ZP_06971115.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297549969|gb|EFH83835.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 231

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
          +K  + +    G  V+++G G G L   +     R   ++  D 
Sbjct: 52 QKTVDLARIQPGEMVLDVGCGTGTLVVEVAHRVGRVGRIVGIDP 95


>gi|284041693|ref|YP_003392033.1| methyltransferase type 11 [Conexibacter woesei DSM 14684]
 gi|283945914|gb|ADB48658.1| Methyltransferase type 11 [Conexibacter woesei DSM 14684]
          Length = 266

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            E+ G   G  V+++ AG GN+       GA  V+  +   +     +  ++Q    LE 
Sbjct: 29  VEACGIGPGQRVLDVAAGSGNVAIPAARAGAD-VVASDITPELLEAGRAEAAQQGVTLEW 87

Query: 100 IQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           ++ D  AL  D + F  ++S   ++           L     
Sbjct: 88  VEADAQALPFDDDAFDVVTSSFGVMFAPDQPAAAAELVRVCR 129


>gi|238916443|ref|YP_002929960.1| hypothetical protein EUBELI_00500 [Eubacterium eligens ATCC 27750]
 gi|238871803|gb|ACR71513.1| Hypothetical protein EUBELI_00500 [Eubacterium eligens ATCC 27750]
          Length = 248

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G     +V+E+G G G +T+ML   G   V  ++  +    I  + + +  +++     D
Sbjct: 35  GVSGDSSVLELGCGTGTVTRMLAKEGYDCV-GLDMSEDMLSIASEKTFEEGSQVIYTCQD 93

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
               +    + +   I I  ++ Y      L +  + 
Sbjct: 94  MRDFEVP--YEVDGMISIGDSMNYITSVPDLESVFAC 128


>gi|154506312|ref|ZP_02043050.1| hypothetical protein RUMGNA_03860 [Ruminococcus gnavus ATCC 29149]
 gi|153793401|gb|EDN75821.1| hypothetical protein RUMGNA_03860 [Ruminococcus gnavus ATCC 29149]
          Length = 232

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISS--QHPNR 96
           + +    G  V+++G G G L  +LL+   R    I +E  ++   + +          +
Sbjct: 39  DFAKVKPGEKVLDLGTGTGIL-PILLSAKTRGEHFIGLEIQKESADMARRSIEWNHLQEK 97

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           +EI+Q D  +      F  +    I+ N PY +
Sbjct: 98  IEIVQGDIKEA--AALFKPTFFDVIVTNPPYML 128


>gi|152992522|ref|YP_001358243.1| hypothetical protein SUN_0928 [Sulfurovum sp. NBC37-1]
 gi|151424383|dbj|BAF71886.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 439

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
            +      G  +++ G G G L + ++  GA +VI ++   +     +D 
Sbjct: 215 VDLLDPKPGEKILDAGCGEGALAEEIVRRGA-EVIGVDLSAEMVDACRDR 263


>gi|153833670|ref|ZP_01986337.1| methyltransferase [Vibrio harveyi HY01]
 gi|148870068|gb|EDL69023.1| methyltransferase [Vibrio harveyi HY01]
          Length = 387

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
                 ++EIG G G  T+ L       V  ++ D+     L+
Sbjct: 181 PTQPDEILEIGCGQGIATRTLAKHA--HVTAVDNDEPSLQRLQ 221


>gi|110679556|ref|YP_682563.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter
           denitrificans OCh 114]
 gi|109455672|gb|ABG31877.1| cyclopropane-fatty-acyl-phospholipid synthase [Roseobacter
           denitrificans OCh 114]
          Length = 402

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           + +  G+  G  ++EIG G G   +        +V  +   ++ F   K+   +      
Sbjct: 177 MVDEMGAKPGDHILEIGCGWGGFAEYAAKERGLRVTCLTISEEQFKYAKERIEKAG---- 232

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
               D ++   + + + S            I +  +F  +    WP ++  +
Sbjct: 233 --LSDLVEFKLQDYRDESGSYD-------GIASIEMFEAVGEKYWPTYFSKV 275


>gi|66509947|ref|XP_396035.2| PREDICTED: protein arginine N-methyltransferase 3 [Apis mellifera]
          Length = 525

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE--------KDQQFFPILKDISSQHP 94
           +       ++++G G G L+      G RKVI ++         D      L DI +   
Sbjct: 247 ANRFSNCVILDVGCGTGILSMFAAKTGCRKVISVDQSDVIYHAIDIVRENNLSDIITIKK 306

Query: 95  NRLEIIQDDALKVD 108
            RLE I  D  KVD
Sbjct: 307 GRLEDINLDEDKVD 320


>gi|332522945|ref|ZP_08399197.1| ribosomal protein L11 methyltransferase [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314209|gb|EGJ27194.1| ribosomal protein L11 methyltransferase [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 317

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G TVI++G G G L+     LGA+K+   + D     + ++    +Q  + +++   
Sbjct: 169 LRGGETVIDVGTGSGVLSIASSLLGAKKIFAFDLDDIAVRVAEENIALNQETSNIQVATG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|327386818|gb|AEA58292.1| hypothetical protein LCBD_2798 [Lactobacillus casei BD-II]
          Length = 274

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEK-DQQFFPIL-------KD 88
           IAE+     G  ++EIG+G G+L+ +L      A  V  I+     +   L         
Sbjct: 34  IAEAWQVKPGEKILEIGSGQGDLSAVLADQVGSAGHVTGIDIASPDYGAPLTLGQAWNHL 93

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           ++    +RL +  +  L  D     N      ++A+  +   +      +
Sbjct: 94  LAGPLGDRLTVHFNTNLSDDLGPIANQHFDRVVLAHSLWYFASANALALL 143


>gi|308273620|emb|CBX30222.1| hypothetical protein N47_D30310 [uncultured Desulfobacterium sp.]
          Length = 210

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 33  LNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI- 89
              LK+I  +       G  V++IG G G+L    L      V  +E   + F   K   
Sbjct: 19  DRALKEIRNTIVSQIDAGSNVMDIGCGTGSL-VFDLAKKCSLVTGVELSSKMFGHAKRRQ 77

Query: 90  SSQHPNRLEIIQDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN 136
            +     +  +  DA  L    +K F+ ++    I  +P ++  ++L  
Sbjct: 78  LANKIQNVRFVHGDASNLSDFKDKQFDYATFSMAIHEMPPDLRVKVLLE 126


>gi|258591472|emb|CBE67773.1| putative Sterol 24-C-methyltransferase [NC10 bacterium 'Dutch
           sediment']
          Length = 276

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           N  KK  E+    D   V+E+  G G  T +L    +  V+ I+  +     L       
Sbjct: 38  NTHKKYLEALRIGDARHVLELACGRGGFTNVLAEHTSGDVLGIDISR---SQLSHARRFK 94

Query: 94  PNRLEIIQDDALKVD 108
              L     D +KVD
Sbjct: 95  RPNLRFRHHDIMKVD 109


>gi|281202716|gb|EFA76918.1| putative methyltransferase [Polysphondylium pallidum PN500]
          Length = 231

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
           I+  I + S       +IE+G+G G L+  L   G   V   + D++
Sbjct: 62  IIDYILKHSELFKDKRIIELGSGTGILSLFLKKKG-FNVTSSDIDEK 107


>gi|260949129|ref|XP_002618861.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238846433|gb|EEQ35897.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 337

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
                  V+++G G G L+      GA+ V  ++         ++I S     +++ ++Q
Sbjct: 48  HLFKDKIVLDVGCGTGILSMFAAKAGAKHVYSVDM-SNIIEKAREIVSLNGFDDKITLLQ 106

Query: 102 D 102
            
Sbjct: 107 G 107


>gi|148380511|ref|YP_001255052.1| O-methyltransferase family protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933640|ref|YP_001384798.1| O-methyltransferase family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937820|ref|YP_001388268.1| O-methyltransferase family protein [Clostridium botulinum A str.
           Hall]
 gi|148289995|emb|CAL84114.1| putative O-methyltransferase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929684|gb|ABS35184.1| O-methyltransferase family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933734|gb|ABS39233.1| O-methyltransferase family protein [Clostridium botulinum A str.
           Hall]
          Length = 218

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 43  SGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
                   ++E+G   G  ++   L + G   +  IE+D +   I K+   ++   ++++
Sbjct: 51  ISVKKPKKILELGTAIGYSSIFMSLSSKGECNITTIERDDKMIEIAKNNIEKYSFKDKIK 110

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP----FWESLTLLF 154
           IIQ D L++  +                YN         ++ D         +  +    
Sbjct: 111 IIQGDCLEILKDLEDKYDMIFMDAGKGHYNEFLPYCLKLLNKDGIIIADNVLFRGMVAND 170

Query: 155 QKEVGERITAQKNSPHY 171
           +  +  +IT  K    Y
Sbjct: 171 ELVIRRKITIVKRMRKY 187


>gi|119897139|ref|YP_932352.1| putative protein-L-isoaspartate O-methyltransferase [Azoarcus sp.
           BH72]
 gi|119669552|emb|CAL93465.1| putative protein-L-isoaspartate O-methyltransferase [Azoarcus sp.
           BH72]
          Length = 217

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 26  GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           GQ  L    I  KI +S       +V+E+GAG G     LL      V  ++ + +    
Sbjct: 57  GQVMLK-PVIEGKILQSLQLHRSDSVLEVGAGSGYF-AALLAARVEWVRTVDIEPELVRF 114

Query: 86  -LKDISSQHPNRLEIIQDDA 104
              +++      + + + DA
Sbjct: 115 AHANLARNGVENVIVEEGDA 134


>gi|118619758|ref|YP_908090.1| hypothetical protein MUL_4684 [Mycobacterium ulcerans Agy99]
 gi|118571868|gb|ABL06619.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 253

 Score = 35.9 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI----LKDISSQHPNRLEIIQD 102
            G  V+++G G G L+  +   GA  V+ ++ D+         L     +  +R+     
Sbjct: 38  AGKRVLDVGCGHGALSIDIAQAGA-SVLGVDLDEGRVAFANRNLAQRFPEQADRVRFRAV 96

Query: 103 DALKVDFEKFFNI 115
           D   +  ++ F++
Sbjct: 97  DVRSLPVDEPFDV 109


>gi|328951528|ref|YP_004368863.1| RNA cap guanine-n2 methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451852|gb|AEB12753.1| RNA cap guanine-n2 methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
          Length = 396

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLE 98
            +        V ++GAG G  T  L  +  R+VI +E+D      L+  ++      R+ 
Sbjct: 92  RALSFAPFARVADLGAGIGADTLALAEV-VREVIAVERDPLRALFLRANAAARGVAERVR 150

Query: 99  IIQDD 103
           +++ D
Sbjct: 151 VLEAD 155


>gi|326332768|ref|ZP_08199029.1| cyclopropane-fatty-acyl-phospholipid synthase [Nocardioidaceae
           bacterium Broad-1]
 gi|325949467|gb|EGD41546.1| cyclopropane-fatty-acyl-phospholipid synthase [Nocardioidaceae
           bacterium Broad-1]
          Length = 420

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLE 98
           + +G   G  ++EIG G G L       GAR V  +    +   + ++    +   +R++
Sbjct: 194 DLAGVGAGDDLLEIGTGWGTLAIEAARRGAR-VTTVTLSVEQAALARERIEDAGFTDRVD 252

Query: 99  IIQDD 103
           ++  D
Sbjct: 253 VLVQD 257


>gi|321442031|gb|ADW85430.1| arg methyltransferase [Tolype notialis]
          Length = 244

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLSDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|315168547|gb|EFU12564.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX1341]
          Length = 277

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|262301049|gb|ACY43117.1| arg methyltransferase [Ephemerella inconstans]
          Length = 246

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G  V++IG G G L+      GARKVI IE           I  +++  + + II+
Sbjct: 19  HLFKGKVVLDIGCGTGILSMFAAKAGARKVIGIEC-SNIVEYANQIVKANRLDDIITIIK 77

Query: 102 DDALKVDFEKFFNISSPIRII 122
               KV+     +    + II
Sbjct: 78  G---KVEEVALPDGIEKVDII 95


>gi|257416747|ref|ZP_05593741.1| modification methylase HemK [Enterococcus faecalis AR01/DG]
 gi|257158575|gb|EEU88535.1| modification methylase HemK [Enterococcus faecalis ARO1/DG]
          Length = 277

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|257090699|ref|ZP_05585060.1| modification methylase hemK [Enterococcus faecalis CH188]
 gi|312905240|ref|ZP_07764360.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0635]
 gi|256999511|gb|EEU86031.1| modification methylase hemK [Enterococcus faecalis CH188]
 gi|310631477|gb|EFQ14760.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0635]
 gi|315579265|gb|EFU91456.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0630]
          Length = 277

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|256763196|ref|ZP_05503776.1| modification methylase HemK [Enterococcus faecalis T3]
 gi|256853869|ref|ZP_05559234.1| hemK protein [Enterococcus faecalis T8]
 gi|307290430|ref|ZP_07570345.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0411]
 gi|256684447|gb|EEU24142.1| modification methylase HemK [Enterococcus faecalis T3]
 gi|256710812|gb|EEU25855.1| hemK protein [Enterococcus faecalis T8]
 gi|306498623|gb|EFM68125.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0411]
 gi|315030388|gb|EFT42320.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX4000]
 gi|315150060|gb|EFT94076.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0012]
          Length = 277

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|226949911|ref|YP_002805002.1| O-methyltransferase family protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842590|gb|ACO85256.1| O-methyltransferase family protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 218

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 43  SGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
                   ++E+G   G  ++   L + G   +  IE+D +   I K+   ++   ++++
Sbjct: 51  ISVKKPKKILELGTAIGYSSIFMSLSSKGECNITTIERDDKMIEIAKNNIEKYSFKDKIK 110

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP----FWESLTLLF 154
           IIQ D L++  +                YN         ++ D         +  +    
Sbjct: 111 IIQGDCLEILKDLEDKYDMIFMDAGKGHYNEFLPYCLKLLNKDGIIIADNVLFRGMVAND 170

Query: 155 QKEVGERITAQKNSPHY 171
           +  +  +IT  K    Y
Sbjct: 171 ELVIRRKITIVKRMRKY 187


>gi|221213745|ref|ZP_03586719.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia multivorans
           CGD1]
 gi|221166534|gb|EED99006.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia multivorans
           CGD1]
          Length = 254

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 14/140 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
            +        ++EIG G G  T  +         + +E  +     +LK I  Q  + + 
Sbjct: 73  NAIFGRSAPRILEIGFGMGASTAEIAANRPGDDFLGVEVHEPGVGALLKLIGEQDLSNIR 132

Query: 99  IIQDDALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           IIQ DA++V                   P     +    +    L   +++   P  +  
Sbjct: 133 IIQHDAVEVLEHMLTPESLDGVHIFFPDPWHKARHHKRRLIQPPLVAQLASRLKPGAYLH 192

Query: 150 LTLLFQ---KEVGERITAQK 166
               +Q   +++ E ++A+ 
Sbjct: 193 CATDWQNYAEQMLEVLSAEP 212


>gi|162147706|ref|YP_001602167.1| biotin synthesis protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542330|ref|YP_002274559.1| dethiobiotin synthase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786283|emb|CAP55865.1| putative biotin synthesis protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530007|gb|ACI49944.1| dethiobiotin synthase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 474

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 34  NILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            +  +I    +++G L    ++E+G G G L+  L  L    ++ +       P + + +
Sbjct: 31  RLADRIRAACDAAGGLAPARILELGCGTGFLSAHLRRLFPDAILTV---TDLAPEMVERA 87

Query: 91  SQHPNRLEIIQDDALK--VDFEKFFNISSPIRIIAN 124
                RL  +  D     VD E   ++ +   +I +
Sbjct: 88  RA---RLTPLGGDVRYAVVDAEDPASVGTGFDLICS 120


>gi|89056154|ref|YP_511605.1| methyltransferase type 12 [Jannaschia sp. CCS1]
 gi|88865703|gb|ABD56580.1| Methyltransferase type 12 [Jannaschia sp. CCS1]
          Length = 586

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI-----EKDQQFFPI 85
           D++++ + AE  G      ++EIG   G L+ +L   G   V+       + D++   +
Sbjct: 25 KDMDLVTRFAE--GLEPDAVIVEIGPWLGALSDILSPKGCLHVVDAFVWTDDHDKRVPGL 82

Query: 86 L 86
          L
Sbjct: 83 L 83


>gi|67921682|ref|ZP_00515200.1| precorrin-8W decarboxylase [Crocosphaera watsonii WH 8501]
 gi|67856794|gb|EAM52035.1| precorrin-8W decarboxylase [Crocosphaera watsonii WH 8501]
          Length = 196

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRL 97
             +        V +IGAG G +   L  L    ++I +E+D+    +++    +     +
Sbjct: 33  ISALRLKQDSVVWDIGAGTGTIPVELGILCPDSQIIAVERDEDVVNLIRQNCDRFGVQNV 92

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRLLFNW 137
           +I++         +   +   I +    P   I T L    
Sbjct: 93  KIVEGQV-PNCLNELEPLPDRICLEGGKPIKEILTELWLRL 132


>gi|315639135|ref|ZP_07894301.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
 gi|315480772|gb|EFU71410.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
          Length = 237

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQD 102
              +VI+IG G G  T  L    A+ ++ ++  +    IL++ +S+        + +  +
Sbjct: 37  KDKSVIDIGCGTGVWTLHLAHE-AKNLLALDNSKAMLTILQEDASKLGLGNIKSVNLSFE 95

Query: 103 DALKVDFEKFFNI 115
           D +K +    F+I
Sbjct: 96  DFIKENANSHFDI 108


>gi|297531577|ref|YP_003672852.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. C56-T3]
 gi|297254829|gb|ADI28275.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. C56-T3]
          Length = 293

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISS 91
           L +LK++         I V+++G G G +   L L   A  V   +  +    + ++ + 
Sbjct: 103 LGVLKRVPRLFAGRKRIDVVDVGTGSGAIAVTLALENKALSVTATDISEAALAVARENAR 162

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +    +  +  D L+      + +     +++N PY
Sbjct: 163 RLGANVSFLCGDLLQPIMAMGWTVD---VVVSNPPY 195


>gi|316934001|ref|YP_004108983.1| protein-L-isoaspartate O-methyltransferase [Rhodopseudomonas
           palustris DX-1]
 gi|315601715|gb|ADU44250.1| protein-L-isoaspartate O-methyltransferase [Rhodopseudomonas
           palustris DX-1]
          Length = 217

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  + E         V+EIGAG G     +L+  A  V+  E+ +      +   ++
Sbjct: 66  PFVVAYMTEQLQLRPRDRVLEIGAGSGY-HAAVLSRLAGDVLSYERFKTLADRARKRLAE 124

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
              + +E++  D    D  +       I + A +P
Sbjct: 125 LGCHNVEVVFGDG--FDPPETAGTFDRILVTAAVP 157


>gi|260549421|ref|ZP_05823640.1| ribosomal protein L11 methyltransferase [Acinetobacter sp. RUH2624]
 gi|260407530|gb|EEX01004.1| ribosomal protein L11 methyltransferase [Acinetobacter sp. RUH2624]
          Length = 301

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 11/138 (7%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
               VI+ G G G L    L LGA+KV   + D Q     K  +  +     +     L 
Sbjct: 159 KDKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVLATKQNAELNGVLDRLYVG--LP 216

Query: 107 VDFEKFFNISSPIRIIANL---PYNIGTRLLFNWISADTWPPFWESL------TLLFQKE 157
            +F++ F       ++AN+   P           + ++        +            E
Sbjct: 217 EEFDQEFKPQQADVLVANILAGPLMALAPEFAQLLKSNGDFALAGVIEEQVADVSGVYSE 276

Query: 158 VGERITAQKNSPHYGRLS 175
             + +  +K   ++ R+S
Sbjct: 277 FFDILDVEKREENWCRIS 294


>gi|255975087|ref|ZP_05425673.1| modification methylase HemK [Enterococcus faecalis T2]
 gi|307285598|ref|ZP_07565737.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0860]
 gi|255967959|gb|EET98581.1| modification methylase HemK [Enterococcus faecalis T2]
 gi|306502822|gb|EFM72087.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0860]
          Length = 277

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|164688849|ref|ZP_02212877.1| hypothetical protein CLOBAR_02497 [Clostridium bartlettii DSM
           16795]
 gi|164602053|gb|EDQ95518.1| hypothetical protein CLOBAR_02497 [Clostridium bartlettii DSM
           16795]
          Length = 249

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD--ISSQHPNR 96
           A  +   +   V+++G G G +  ++     A K+I +E  ++ + +       +   +R
Sbjct: 38  ANFAKVKNNAKVVDLGTGTGIIPILIAGKSKASKIIGVEIQEEVYEMATRSVKLNDLEDR 97

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +EII  D   +D E    +       +N PY
Sbjct: 98  VEIINADIKTIDKE--LEVHGYHVATSNPPY 126


>gi|116251696|ref|YP_767534.1| modification methylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256344|emb|CAK07425.1| putative modification methylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 666

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
               + V+E+ AG G ++  L   G   + + E D+     L+ ++    N   +++ D 
Sbjct: 289 PTQKLNVVELCAGAGGISLGLEDAGYHPLALFEFDKHAVATLR-LNRPLWN---VVEGDI 344

Query: 105 LKVDFEKFFNIS 116
            +VDF  + ++ 
Sbjct: 345 RQVDFTAYRSVG 356


>gi|94969500|ref|YP_591548.1| protein-L-isoaspartate O-methyltransferase [Candidatus Koribacter
           versatilis Ellin345]
 gi|209573147|sp|Q1INS6|PIMT_ACIBL RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|94551550|gb|ABF41474.1| protein-L-isoaspartate O-methyltransferase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 222

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E++       V+E+G G G     LL   A +V  IE+  +    L  I  +
Sbjct: 70  PYIVARMLEAAQIAPADKVLEVGTGTGY-QAALLGALAAQVFTIERHAELAA-LARIHLE 127

Query: 93  HPN--RLEIIQDD 103
           H     + +I  D
Sbjct: 128 HLGYTNISVITGD 140


>gi|222823086|ref|YP_002574659.1| hypothetical protein Cla_0040 [Campylobacter lari RM2100]
 gi|222538307|gb|ACM63408.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 232

 Score = 35.9 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEI 99
              GSL G +V++IG G G  T  L    A+ V+ ++       IL+D +  H  + ++ 
Sbjct: 27  AKLGSLQGKSVVDIGCGSGVWTLHLA-QKAKDVLGVDSSSAMLEILQDDAKTHAISNIKT 85

Query: 100 IQDDA 104
           I  D 
Sbjct: 86  INLDF 90


>gi|332296050|ref|YP_004437973.1| tRNA methyltransferase complex GCD14 subunit [Thermodesulfobium
           narugense DSM 14796]
 gi|332179153|gb|AEE14842.1| tRNA methyltransferase complex GCD14 subunit [Thermodesulfobium
           narugense DSM 14796]
          Length = 255

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHP-- 94
           I       +G  V E G G G+LT +   L + K  VI  EK+  F    +    +    
Sbjct: 88  IILKLDIRNGKVVGEAGTGSGSLTLIFSELVSEKGRVITFEKNLDFLNNARKNIEKFSKL 147

Query: 95  NRLEIIQDDALKVDFEKFFN 114
             +  + +D +  ++E FF+
Sbjct: 148 QNITFVNEDFINSNYENFFD 167


>gi|315648262|ref|ZP_07901363.1| Methyltransferase type 11 [Paenibacillus vortex V453]
 gi|315276908|gb|EFU40251.1| Methyltransferase type 11 [Paenibacillus vortex V453]
          Length = 240

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 ++E+G G G     L  +G  +V  I+ ++      +  +      ++ +Q D 
Sbjct: 32  IEPNSRILEVGCGTGRTACHLSEMG-YQVTAIDLNENMIKKARTRAEAMKMDVQFLQADV 90

Query: 105 LKVDFEK 111
            ++ FE 
Sbjct: 91  CELPFED 97


>gi|302544142|ref|ZP_07296484.1| LOW QUALITY PROTEIN: helix-loop-helix' dimerization domain
           signature protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461760|gb|EFL24853.1| LOW QUALITY PROTEIN: helix-loop-helix' dimerization domain
           signature protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 327

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 48/162 (29%), Gaps = 21/162 (12%)

Query: 37  KKIAESSGSLDGITVIEIG---AGPGNLTQMLLTLGARKVIVIEKD-QQFFPILK----- 87
           + I        G++ + +G     PG L + L+     +V+  E+D +++ P        
Sbjct: 69  RAIVPVPVLTPGLSSLWVGLITPVPGALARPLVESLRHEVVCAERDIRRYVPEPPGGPLG 128

Query: 88  -DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
            + + +   R  I + D     +       +P   +   P         +W     +   
Sbjct: 129 VNRALELALR-RIREADV-ATRWSSAATPGAPSDPLPTDP---------DWAGGTLYTDH 177

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
                    +EV   +        +  L +    R     + 
Sbjct: 178 RRRAVNASPQEVWRVVEGIGGENGWYALPLAWALRGWIDTLM 219


>gi|299769454|ref|YP_003731480.1| Cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Acinetobacter sp. DR1]
 gi|298699542|gb|ADI90107.1| Cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Acinetobacter sp. DR1]
          Length = 349

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLE 98
           +   +G  ++E+G G G+LT  +     R  I            K I  Q      N +E
Sbjct: 117 AQLKNGQHILELGCGWGSLTLWMAENYPRSQITAV--SNSATQKKHILGQAELRGLNNIE 174

Query: 99  IIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD--TWPPFWESLTLLF 154
           ++  D   L++D  +F  + S         Y      +  W+ AD   W   +    L +
Sbjct: 175 VLTCDVNVLELDQAQFDRVVSVEMFEHVRNYQRLFEKIQGWLKADGLLWCHIFCHRFLHY 234

Query: 155 QKEV 158
             EV
Sbjct: 235 PFEV 238


>gi|257087540|ref|ZP_05581901.1| modification methylase HemK [Enterococcus faecalis D6]
 gi|256995570|gb|EEU82872.1| modification methylase HemK [Enterococcus faecalis D6]
 gi|315025303|gb|EFT37235.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX2137]
          Length = 277

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|294813601|ref|ZP_06772244.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326441993|ref|ZP_08216727.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294326200|gb|EFG07843.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 326

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 5/129 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A       G  V+++  GPG     L   G  +V  ++         +    +    +E+
Sbjct: 113 ARLLDFPRGSRVLDLCCGPGLFLVPLARRG-HRVTGVDLSPAMLERARAACERAGAEVEL 171

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI--SADTWPPFWESLTLLFQKE 157
           I+ D L       +++   + +  +  Y          +  +  +  P    L  +  KE
Sbjct: 172 IRADMLDYTAPGAYDV--ILNVFTSFGYFADPADNLRVLRNARRSLAPGGTLLVDVMGKE 229

Query: 158 VGERITAQK 166
           V      + 
Sbjct: 230 VLAGWIGRP 238


>gi|195349641|ref|XP_002041351.1| GM10305 [Drosophila sechellia]
 gi|194123046|gb|EDW45089.1| GM10305 [Drosophila sechellia]
          Length = 317

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQH 93
           +  I        G  V+E G G G+L+   L        +   D  +      +D   +H
Sbjct: 100 ISMIIHQLEVRPGSVVVESGTGSGSLSHYFLRALKPTGHLHTFDFHEARADQARDEFRRH 159

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-----TWPPF 146
              + + +   D   + F    +  +    +     ++     F  +        ++ P 
Sbjct: 160 GIADFVTVYHRDVCNLGFGAELDGKADAVFLDLPAPDLAVPHAFKALKLSGGRFCSFSPC 219

Query: 147 WESLTLLFQK 156
            E      Q+
Sbjct: 220 IEQSQRCIQE 229


>gi|163787262|ref|ZP_02181709.1| putative RNA methyltransferase [Flavobacteriales bacterium ALC-1]
 gi|159877150|gb|EDP71207.1| putative RNA methyltransferase [Flavobacteriales bacterium ALC-1]
          Length = 237

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK 106
           +++++GAG G L+ ML     A+ +  IE D   +    +     P  +RL       L+
Sbjct: 40  SILDLGAGTGILSLMLAQRSSAQNIEAIEIDADAYEQCSENFENSPWADRLFCYHASLLE 99

Query: 107 VDFEKFFNISSPIRIIANLPYN 128
              E          II N P+ 
Sbjct: 100 FVKE---VEDKFDLIICNPPFY 118


>gi|153003144|ref|YP_001377469.1| ribosomal protein L11 methyltransferase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026717|gb|ABS24485.1| ribosomal protein L11 methyltransferase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 286

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             G +V+++G G G L      LGA +V   + D     + ++ + ++   LE+
Sbjct: 149 RPGASVLDVGTGSGLLAIAAAKLGAGRVAANDNDPVAVAVARENADRNGAALEL 202


>gi|52784067|ref|YP_089896.1| hypothetical protein BLi00242 [Bacillus licheniformis ATCC 14580]
 gi|163119200|ref|YP_077494.2| methyltransferase [Bacillus licheniformis ATCC 14580]
 gi|52346569|gb|AAU39203.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|145902706|gb|AAU21856.2| SAM (and some other nucleotide) binding motif,Generic
           methyltransferase [Bacillus licheniformis ATCC 14580]
          Length = 257

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I     ++    V++ G G G L++ML    A  V  ++   +   I K+ +   P+ L 
Sbjct: 41  IFSLIETVKNQKVLDAGCGEGYLSRMLAAREA-VVTAVDYSTRMLEIAKERT---PDGLH 96

Query: 99  II--QDDA--LKVDFEKFFNISSPIRIIANLPYN 128
           I     +   L    E+ F+I     +I +L  +
Sbjct: 97  IHYRHGNCEDLHFLDEQSFDIIISNMVIQDLAND 130


>gi|16126800|ref|NP_421364.1| hypothetical protein CC_2562 [Caulobacter crescentus CB15]
 gi|221235581|ref|YP_002518018.1| S-adenosyl-methyltransferase MraW [Caulobacter crescentus NA1000]
 gi|20139272|sp|Q9RQJ6|RSMH_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446411|sp|B8H0A2|RSMH_CAUCN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|6318314|gb|AAF06834.1|AF099190_2 unknown [Caulobacter crescentus CB15]
 gi|13424128|gb|AAK24532.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220964754|gb|ACL96110.1| S-adenosyl-methyltransferase mraW [Caulobacter crescentus NA1000]
          Length = 311

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L ++ E+  +  G  V++   G G  T+ +L  GA  V+  ++D    P ++  ++  P
Sbjct: 10  LLDEVVEALDAKPGDVVVDGTFGAGGYTRAVLPTGA-SVVAFDRD----PTVRQFAANLP 64

Query: 95  -NRLEIIQD 102
            +R  ++Q 
Sbjct: 65  ADRFRLVQA 73


>gi|84684768|ref|ZP_01012668.1| cyclopropane-fatty-acyl-phospholipid synthase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667103|gb|EAQ13573.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacterales
           bacterium HTCC2654]
          Length = 402

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
             + +  G+  G  V+EIG G G   +        +V  +   Q+ F    +    +   
Sbjct: 175 ASMIDEMGAQPGDHVLEIGCGWGGFAEYAAKERGLQVTCLTISQEQFNYAVERIEKAGLS 234

Query: 95  NRLEIIQDD 103
           +R+ I   D
Sbjct: 235 DRVTIKLQD 243


>gi|94313585|ref|YP_586794.1| putative spermidine synthase [Cupriavidus metallidurans CH34]
 gi|93357437|gb|ABF11525.1| putative spermidine synthase [Cupriavidus metallidurans CH34]
          Length = 271

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 54  IGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDD 103
           IG G G+L +     L + KV+ IE D      L+D     Q  +R E+I  D
Sbjct: 78  IGLGGGSLAKYCYHHLPSAKVVAIEIDPAVIA-LRDKFQIPQDDDRFEVICAD 129


>gi|319740461|gb|ADV60524.1| arg methyltransferase [Lemonia dumi]
          Length = 244

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLSDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|300172697|ref|YP_003771862.1| protein methyltransferase prmC [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887075|emb|CBL91043.1| Protein methyltransferase prmC [Leuconostoc gasicomitatum LMG
           18811]
          Length = 335

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 26/144 (18%)

Query: 3   MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNIL----------KKIAESSGSLDGITV- 51
           MNN+   ++ IL H         G+ F++D  +L          + I + +GS +G  V 
Sbjct: 117 MNNEP--VQYILGHAPF-----YGREFMVDSRVLIPRPETEQLVEWILKDAGSKNGKPVS 169

Query: 52  -IEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108
            ++IG G G + + L+    R +    +       + +  + +   N L ++Q D     
Sbjct: 170 VLDIGTGTGAIIETLMLENPRVRGFAADISSGALAVAEMNAQRFGLNYLHLVQSDVYSAV 229

Query: 109 FEKFFNISSPIRIIANLPYNIGTR 132
               F+I     I++N PY   T 
Sbjct: 230 EGLEFDI-----IVSNPPYIATTD 248


>gi|298370003|ref|ZP_06981319.1| ribosomal protein L11 methyltransferase [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298281463|gb|EFI22952.1| ribosomal protein L11 methyltransferase [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 295

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G +V++ G G G LT   L LGA   + ++ D+Q      D ++Q+  +      D 
Sbjct: 161 LKGGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAIRASNDNAAQNDVQAHFYLPDG 220

Query: 105 L 105
           L
Sbjct: 221 L 221


>gi|281425741|ref|ZP_06256654.1| ribosomal protein L11 methyltransferase [Prevotella oris F0302]
 gi|281400149|gb|EFB30980.1| ribosomal protein L11 methyltransferase [Prevotella oris F0302]
          Length = 287

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDD 103
            L    +++ G G G L  +    GA+ V+  + D+      + +I+  +   +EI   D
Sbjct: 148 DLKDKRILDCGCGTGILGIIAAKYGAKAVVGYDIDEWSVENSQHNIAINNVENIEIYHGD 207

Query: 104 A 104
           A
Sbjct: 208 A 208


>gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
 gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
          Length = 426

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 14/145 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
                G  +++  A PG  T  +L      +V+ I+ D+     +++   +     ++I 
Sbjct: 239 LAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNAQVIC 298

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLFQKE 157
            DA     + ++      RI+ + P +    +       W+      P    L    Q+E
Sbjct: 299 GDA--RYPQDWWQDEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAEL----QRE 352

Query: 158 VGERI---TAQKNSPHYGRLSVLTG 179
           + + +        +  Y   S+   
Sbjct: 353 ILDAMWQQLKPGGTLVYATCSITPQ 377


>gi|192292422|ref|YP_001993027.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           TIE-1]
 gi|262825558|sp|B3QFN9|RSMH_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|192286171|gb|ACF02552.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           TIE-1]
          Length = 332

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G G  T+++L     +VI I++D        D+ +   +RL ++QD
Sbjct: 34  GAGGYTRLILETAGSRVIAIDRDPTAIAGGADLVADAGHRLTLVQD 79


>gi|48478413|ref|YP_024119.1| protein-L-isoaspartate O-methyltransferase [Picrophilus torridus
           DSM 9790]
 gi|48431061|gb|AAT43926.1| protein-L-isoaspartate O-methyltransferase [Picrophilus torridus
           DSM 9790]
          Length = 243

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDIS 90
           D +I   I   +G   G+ ++EIG G G ++  +L  LG   +  I+ + +     +   
Sbjct: 69  DKDIAY-ILFKTGVRPGMNILEIGIGIGTMSYAILNILGNGSLTSIDINIENIKNSEKNV 127

Query: 91  SQH--PNRLEIIQDDALKVDFEKF 112
           ++        II  D  KV  EK+
Sbjct: 128 NELIDTGNWRIINGDIKKVQGEKY 151


>gi|85111383|ref|XP_963910.1| protein arginine N-methyltransferase 1 [Neurospora crassa OR74A]
 gi|28925659|gb|EAA34674.1| protein arginine N-methyltransferase 1 [Neurospora crassa OR74A]
          Length = 346

 Score = 35.9 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 30 LLDL----NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
          L D     + +  I ++        V+++G G G L+      GA+ VI ++ 
Sbjct: 40 LKDEVRTKSYMHSIVQNKHLFKDKIVLDVGCGTGILSMFAAKAGAKHVIGVDM 92


>gi|328881875|emb|CCA55114.1| putative methyltransferase [Streptomyces venezuelae ATCC 10712]
          Length = 258

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 11/123 (8%)

Query: 50  TVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDA 104
            +++ G G G  TQ L L      V  +E D       ++  +  P     R+ +I+ D 
Sbjct: 43  RILDAGMGQG--TQALRLARAGHTVTGLEADPDLLKTARESLATEPAGIRERVRLIEGDG 100

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164
            +            +     L Y      L   ++    P    SL +       E +  
Sbjct: 101 RETGVHFLPGSFDVVLCHGVLMYADEPDALLAGLARMLAPGGLLSLVV----RNAEALAM 156

Query: 165 QKN 167
           +  
Sbjct: 157 RPG 159


>gi|329113330|ref|ZP_08242111.1| tRNA (adenine-N(6)-)-methyltransferase [Acetobacter pomorum DM001]
 gi|326697155|gb|EGE48815.1| tRNA (adenine-N(6)-)-methyltransferase [Acetobacter pomorum DM001]
          Length = 251

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 39  IAESSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNR 96
           +A +  +  G  V+EIG G G  L  +L      +   +EK+     +  +++ + H   
Sbjct: 35  MAAAVPARKGQHVLEIGCGAGAGLLCLLHRAPTLQGTGVEKESDTATLAQQNMVANHQQN 94

Query: 97  LEIIQDDALKVDFEKFFNISSPI------RIIANLPYN 128
           + I+        F   F   +P+        +AN P++
Sbjct: 95  IRILNA-----TFPDVFLEDNPLPEQYFDHCMANPPWH 127


>gi|326488038|dbj|BAJ89858.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326531960|dbj|BAK01356.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 213

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 33  LNILKKIAESSGSLDGI----TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
            +I  ++  ++ +         V + G G G L      L A  V  I+ D Q   + ++
Sbjct: 30  PHIASRMLYTAENSFDDIAGKVVADFGCGCGTLAIASALLDAEHVTGIDIDLQSLELAQE 89

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFF 113
            ++     +++IQ D   ++ +   
Sbjct: 90  NATDLELDIDLIQCDIKNLNLKGLL 114


>gi|315446017|ref|YP_004078896.1| O-methyltransferase [Mycobacterium sp. Spyr1]
 gi|315264320|gb|ADU01062.1| predicted O-methyltransferase [Mycobacterium sp. Spyr1]
          Length = 348

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E +    G  V++IGAG G     L   G   V  +E   +F  IL+  + +H   + +I
Sbjct: 134 EIADPAAG-RVLDIGAGTGRNALALARRG-HPVDAVELTSKFADILRAEAYKHLFNIRVI 191

Query: 101 QDDALKV--DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWP 144
             D  +   D  K + +     ++++    +  R +F   S    P
Sbjct: 192 DRDVFETMDDLRKDYQLVILSEVVSDFRNAMQLRAIFELASECLAP 237


>gi|312135042|ref|YP_004002380.1| methyltransferase [Caldicellulosiruptor owensensis OL]
 gi|311775093|gb|ADQ04580.1| methyltransferase [Caldicellulosiruptor owensensis OL]
          Length = 184

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEK 111
           AG GN+    L+ GA++V+ +EKD +   ++K+         R  II+ D ++    K
Sbjct: 51  AGTGNVGIEFLSRGAKEVVFVEKDVRCINLIKENLKNLDLLKRARIIKADVIRFLKSK 108


>gi|300866600|ref|ZP_07111288.1| putative glycosyl transferase [Oscillatoria sp. PCC 6506]
 gi|300335372|emb|CBN56448.1| putative glycosyl transferase [Oscillatoria sp. PCC 6506]
          Length = 559

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 22/152 (14%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIV-IEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D   ++E+G G G L +    +    + + IE+D Q   I  +          +I  D
Sbjct: 16  PPDAKIILEVGCGTGTLGEQYKRINPHSLYIGIERDPQKAKIASERLD------RVIIGD 69

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
             ++D + F      +  +          +  + +S  T P              G+ + 
Sbjct: 70  VEQLDIQSFDIAEETVDCL----------VYNHLLSYLTNPWELLRQHSTLLNPDGQILA 119

Query: 164 AQKNSPHYGRL--SVLTGW---RTKATMMFDI 190
           +  N  H+ ++   +   W     K    F I
Sbjct: 120 SIPNVQHWIKIVNLLRGQWENLEGKIHHWFTI 151


>gi|297526440|ref|YP_003668464.1| methyltransferase-like protein [Staphylothermus hellenicus DSM
           12710]
 gi|297255356|gb|ADI31565.1| methyltransferase-like protein [Staphylothermus hellenicus DSM
           12710]
          Length = 292

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRL 97
            ++    G  V++   G G         GAR +  +E D     + +     H    N +
Sbjct: 131 RTAKVRRGDRVLDTCMGLGYTAIHSYLRGARTIYTVEIDPNIIWVAEHNPWSHGLSNNGI 190

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLP 126
           +II+ +   +D  ++F+ +   +II + P
Sbjct: 191 KIIRGNI--IDVIQYFDENYFDKIIHDPP 217


>gi|260911190|ref|ZP_05917793.1| ribosomal protein L11 methyltransferase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634670|gb|EEX52757.1| ribosomal protein L11 methyltransferase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 289

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISSQHPNRLEIIQDD 103
            L G  +++ G G G L  +   LGA  V+  + D+      L +        + + + D
Sbjct: 149 PLQGKRLLDCGCGTGILGIVASKLGAESVLGYDIDEWSVDNSLHNAMLNGVANMVVRKGD 208

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163
           A  +             ++AN+  NI    L  W+ A         L+  +Q +V   +T
Sbjct: 209 ATSLT----AGDGPFDVVVANINRNILLADLPRWVQAMAKKGTI-VLSGFYQADVSMLVT 263

Query: 164 AQKN 167
           A  N
Sbjct: 264 AATN 267


>gi|227532970|ref|ZP_03963019.1| SAM-dependent methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227189371|gb|EEI69438.1| SAM-dependent methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 274

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEK-DQQFFPIL-------KD 88
           IAE+     G  ++E+G G G+L+ +L      A  V  I+     +   L         
Sbjct: 34  IAEAWQVKPGEKILEVGCGQGDLSAVLADQVGSAGHVTGIDIASPDYGAPLTLGQAWNHL 93

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
           ++    +RL +  +  L  D     +      ++A+  +   +      +
Sbjct: 94  LAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALL 143


>gi|218510472|ref|ZP_03508350.1| hypothetical protein RetlB5_25316 [Rhizobium etli Brasil 5]
          Length = 250

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 12/79 (15%)

Query: 1  MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
          M M +  +S   +     I  ++            +  I   +G+    +VI+IGAG G 
Sbjct: 13 MNMYDDYYSDGVVAEKRAIAARQS-----------VAHIRTVAGNQKFDSVIDIGAGEGA 61

Query: 61 LTQMLLTLG-ARKVIVIEK 78
          +   L   G A+    +E 
Sbjct: 62 VLAELHASGFAKDFSAVEI 80


>gi|167766087|ref|ZP_02438140.1| hypothetical protein CLOSS21_00580 [Clostridium sp. SS2/1]
 gi|167712167|gb|EDS22746.1| hypothetical protein CLOSS21_00580 [Clostridium sp. SS2/1]
          Length = 195

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL+   +  ++ +     D   ++++G G G     L     + V     D+    IL  
Sbjct: 18  FLMRDALRDEMIKKICVRDTDNILDVGCGDGTFLHEL--TRWKDVEGYGIDESEDKILIA 75

Query: 89  ISSQHPNRLEIIQDDALKVDFEKF 112
             +      E    D L  D   F
Sbjct: 76  KQTWPELHFETGYSDFLSFDDNSF 99


>gi|91774587|ref|YP_544343.1| hypothetical protein Mfla_0231 [Methylobacillus flagellatus KT]
 gi|123254871|sp|Q1H4T5|TRMB_METFK RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|91708574|gb|ABE48502.1| tRNA (guanine-N(7)-)-methyltransferase [Methylobacillus flagellatus
           KT]
          Length = 238

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 42/142 (29%), Gaps = 29/142 (20%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKD--------QQFFPILKDISSQHPNRLEIIQD 102
           V+EIG G G+ T  +           E D             +LK I     N L IIQ 
Sbjct: 69  VLEIGFGMGDSTAKIAQSQP------ECDFIGVEVHTPGVGSLLKQIGELQLNNLRIIQH 122

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI 162
           DA++V      +                +    +    D W         L Q    + +
Sbjct: 123 DAVEVLQHMIAD---------------ASLDGVHIFFPDPWHKKRHHKRRLIQAAFVKLL 167

Query: 163 TAQKNSPHYGRLSVLTGWRTKA 184
            ++  +  Y  ++       + 
Sbjct: 168 CSKMKAGAYLHVATDWQEYAEW 189


>gi|27380050|ref|NP_771579.1| methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27353204|dbj|BAC50204.1| methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 292

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I   + + +G   G  VI++G G G  T       A     +  D    P+L    +  P
Sbjct: 45  IADVLIDRAGPKPGERVIDVGCGSGATTVAFAKAVAPNGFALGLD-VSDPMLSQARALAP 103

Query: 95  NR--LEIIQDDA 104
               L+ +  DA
Sbjct: 104 KGLPLDFVLADA 115


>gi|154243836|ref|YP_001409409.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154162958|gb|ABS70173.1| helicase domain protein [Xanthobacter autotrophicus Py2]
          Length = 1697

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 22/121 (18%)

Query: 39  IAES--SGSLD----GITVIEIGAGPGNLTQMLLTLGAR---KVIVIEKDQQFFPILKDI 89
           I  +  +G L     G  V+E G G G L   L+    R    V  IE D    P+   I
Sbjct: 175 IVRAIWAGLLRLGWRGGRVLEPGIGTG-LFPALMPDNLRSVSHVTGIEID----PVTARI 229

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN---IGTRLLFNWISADTWPPF 146
           +     R  I+  D  +VD    F+++     I N P++   + +   F  +       F
Sbjct: 230 ARLLQPRARIVTGDFARVDLPAHFDLA-----IGNPPFSDRAVRSDRAFRSLGLRLHDYF 284

Query: 147 W 147
            
Sbjct: 285 I 285


>gi|94312543|ref|YP_585753.1| methyltransferase type 11 [Cupriavidus metallidurans CH34]
 gi|93356395|gb|ABF10484.1| trans-aconitate methyltransferase [Cupriavidus metallidurans CH34]
          Length = 256

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 32  DLNI--LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKD 88
           D     ++ +  +  +       ++G GPGN T++L    A  +V   + D       + 
Sbjct: 13  DERTRPVRDLVGAIPTASARRAADVGCGPGNSTEVLAARYAGAEVTGFDSDADMIAAARK 72

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
                  R +I   D    +    +++     +   +P +  
Sbjct: 73  RLPDL--RFDI--ADVTAWNDPGPYDVILANAVFQWVPDHAT 110


>gi|319940234|ref|ZP_08014586.1| ribosomal protein L11 methyltransferase [Streptococcus anginosus
           1_2_62CV]
 gi|319810536|gb|EFW06872.1| ribosomal protein L11 methyltransferase [Streptococcus anginosus
           1_2_62CV]
          Length = 317

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G  V+++G G G L+     LGA+++   + D     + ++  + +     + +   
Sbjct: 169 LRSGEIVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIALNAGTENIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|315222478|ref|ZP_07864376.1| ribosomal protein L11 methyltransferase [Streptococcus anginosus
           F0211]
 gi|315188446|gb|EFU22163.1| ribosomal protein L11 methyltransferase [Streptococcus anginosus
           F0211]
          Length = 317

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G  V+++G G G L+     LGA+++   + D     + ++  + +     + +   
Sbjct: 169 LRSGEIVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIALNAGTENIHVAAG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|262831286|sp|Q57L59|TRMN6_SALCH RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
          Length = 263

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQH--PNRLE 98
           +   D   +++IG G G L  ML       V    +E D       ++  +    P+R+ 
Sbjct: 40  APVADVKRILDIGTGSGLLALMLAQRTDDNVPIDAVELDAGAAMQAQENVAHSPWPHRIT 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  DD  +    +         II+N PY 
Sbjct: 100 VHTDDIQRWAPRQTVRFD---LIISNPPYY 126


>gi|258508625|ref|YP_003171376.1| methyltransferase [Lactobacillus rhamnosus GG]
 gi|257148552|emb|CAR87525.1| Methyltransferase [Lactobacillus rhamnosus GG]
          Length = 247

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
           A  +       V+++ AG G +   L      +V ++E   +   + +   + +    ++
Sbjct: 39  ANFAQIKRHSRVVDLAAGNGAVGLFLARKTDNRVTMVELQPRLADMARRSVALNALANVD 98

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + + D    D  KF    S   +  N PY
Sbjct: 99  VHEGDL--ADTTKFVAKDSVDVVTCNPPY 125


>gi|302526954|ref|ZP_07279296.1| predicted protein [Streptomyces sp. AA4]
 gi|302435849|gb|EFL07665.1| predicted protein [Streptomyces sp. AA4]
          Length = 301

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKD--QQFFPILKDISSQHPN 95
             ++G      V+++G G G L + L + G   R V ++  D  +        ++     
Sbjct: 94  VRAAGIRP--RVVDVGCGLGFLVRSLASSGVLGRDVELVGVDFNRALVAEANRLAQAEQL 151

Query: 96  RLEIIQDDA 104
               +  DA
Sbjct: 152 PCTFVCGDA 160


>gi|237748712|ref|ZP_04579192.1| cyclopropane-fatty-acyl-phospholipid synthase [Oxalobacter
           formigenes OXCC13]
 gi|229380074|gb|EEO30165.1| cyclopropane-fatty-acyl-phospholipid synthase [Oxalobacter
           formigenes OXCC13]
          Length = 407

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           +  I        G  +++IG G G L           V+ I   +  + + +    +   
Sbjct: 161 IDHILTKINVRPGDRLLDIGCGWGALAIRAAEKFGANVVGITLSKNQYEMARQRVKEKGL 220

Query: 94  PNRLEIIQDD 103
            ++++I   D
Sbjct: 221 EDKIDIRIQD 230


>gi|221211606|ref|ZP_03584585.1| protein-L-isoaspartate O-methyltransferase [Burkholderia
           multivorans CGD1]
 gi|221168967|gb|EEE01435.1| protein-L-isoaspartate O-methyltransferase [Burkholderia
           multivorans CGD1]
          Length = 705

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           ++ ++ E++       V+++G G G     + +     V  IE+        +   +++ 
Sbjct: 96  VVARMLEAATLSPTDRVLDVGTGSGY-AAAVASRIVTHVDSIERHASLAASAQRTLAENG 154

Query: 95  -NRLEIIQDD 103
              +++   D
Sbjct: 155 FGNVDVHHAD 164


>gi|199597112|ref|ZP_03210544.1| Predicted O-methyltransferase [Lactobacillus rhamnosus HN001]
 gi|229552432|ref|ZP_04441157.1| methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|199591916|gb|EDY99990.1| Predicted O-methyltransferase [Lactobacillus rhamnosus HN001]
 gi|229314169|gb|EEN80142.1| methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|259649931|dbj|BAI42093.1| putative methyltransferase [Lactobacillus rhamnosus GG]
          Length = 244

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
           A  +       V+++ AG G +   L      +V ++E   +   + +   + +    ++
Sbjct: 36  ANFAQIKRHSRVVDLAAGNGAVGLFLARKTDNRVTMVELQPRLADMARRSVALNALANVD 95

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + + D    D  KF    S   +  N PY
Sbjct: 96  VHEGDL--ADTTKFVAKDSVDVVTCNPPY 122


>gi|220919532|ref|YP_002494836.1| glycosyl transferase family 2 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957386|gb|ACL67770.1| glycosyl transferase family 2 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 527

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           +A+      G  V+EIG+G GNLT+ L+       +  + +  +   L+ ++   P  L+
Sbjct: 285 MADVIRPFCGQRVLEIGSGTGNLTRRLVPRNTY--VASDINPLYLQTLRGLTVDRP-YLD 341

Query: 99  IIQDDALK 106
           +   D  +
Sbjct: 342 VTLTDVTR 349


>gi|163868721|ref|YP_001609933.1| S-adenosyl-methyltransferase MraW [Bartonella tribocorum CIP
           105476]
 gi|263445963|sp|A9IWB6|RSMH_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161018380|emb|CAK01938.1| S-adenosyl-methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 332

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G  T+ LL  GA +VI +++D       + +  +   RL ++  +  ++D
Sbjct: 37  GAGGYTRALLKAGA-QVIALDRDPHAIAAGQSLVDEFFPRLRLVHMEFSQLD 87


>gi|158431193|pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8 Complexed With S-
           Adenosylmethionine
 gi|158431194|pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8 Complexed With S-
           Adenosylmethionine
 gi|158431195|pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8
 gi|158431196|pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8
          Length = 263

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 40  AESSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           A +        V +E+G G G +   L+  G R  I ++ D     + +   +    +++
Sbjct: 31  ASAVHPKGEEPVFLELGVGTGRIALPLIARGYRY-IALDADAAXLEVFRQKIAGVDRKVQ 89

Query: 99  IIQDDALKVDFEK 111
           ++Q DA  +    
Sbjct: 90  VVQADARAIPLPD 102


>gi|153004472|ref|YP_001378797.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
 gi|152028045|gb|ABS25813.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
          Length = 206

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  +   +G   G  V ++G G G +      LGAR V  ++ D +     +  +  
Sbjct: 63  PEVVDAMLRLAGVSPGDVVYDLGCGDGRIVIAAAKLGARAV-GVDLDPERVREARANARA 121

Query: 93  H--PNRLEIIQDDALKVD 108
               +R+EI + D  + D
Sbjct: 122 AGVESRVEIREGDLFEAD 139


>gi|119508871|ref|ZP_01628023.1| polyketide synthase [Nodularia spumigena CCY9414]
 gi|119466400|gb|EAW47285.1| polyketide synthase [Nodularia spumigena CCY9414]
          Length = 2471

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 30   LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK 72
            L+   I+  IAE       + ++EIGAG G  T  LL   A++
Sbjct: 1395 LVKQAIITAIAE-IPPEKPLRILEIGAGTGGTTAHLLPELAQR 1436


>gi|108803487|ref|YP_643424.1| precorrin-6Y C5,15-methyltransferase [Rubrobacter xylanophilus DSM
           9941]
 gi|108764730|gb|ABG03612.1| precorrin-6Y C5,15-methyltransferase (decarboxylating) [Rubrobacter
           xylanophilus DSM 9941]
          Length = 403

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
            G   G  V ++GAG G++      LGA     +E+D +    ++  + +H   + +++ 
Sbjct: 249 LGPGPGDLVWDVGAGSGSVAIECARLGAAA-AAVERDPESCGRIRRNAERHGVCVRVVEG 307

Query: 103 DALKVDFEKFFNISSPIRII 122
           +A     E    +  P  + 
Sbjct: 308 EA----PEALRGLPDPDAVF 323


>gi|90411273|ref|ZP_01219285.1| cyclopropane-fatty-acyl-phospholipid synthase [Photobacterium
           profundum 3TCK]
 gi|90327802|gb|EAS44133.1| cyclopropane-fatty-acyl-phospholipid synthase [Photobacterium
           profundum 3TCK]
          Length = 409

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
            ++           ++EIG G G L          +V      ++ +   K+   Q    
Sbjct: 181 DRLCRQLDLKPTDHLLEIGTGWGALATHAAKHYGCRVTTTTISKEQYDWAKECVEQQGLG 240

Query: 95  NRLEIIQDD 103
           +++ ++ DD
Sbjct: 241 DKITLLLDD 249


>gi|62181217|ref|YP_217634.1| hypothetical protein SC2647 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128850|gb|AAX66553.1| putative transferase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715705|gb|EFZ07276.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 287

 Score = 35.9 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQH--PNRLE 98
           +   D   +++IG G G L  ML       V    +E D       ++  +    P+R+ 
Sbjct: 64  APVADVKRILDIGTGSGLLALMLAQRTDDNVPIDAVELDAGAAMQAQENVAHSPWPHRIT 123

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  DD  +    +         II+N PY 
Sbjct: 124 VHTDDIQRWAPRQTVRFD---LIISNPPYY 150


>gi|321442007|gb|ADW85418.1| arg methyltransferase [Lasiocampa quercus]
          Length = 244

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLSDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|307824209|ref|ZP_07654435.1| ubiquinone biosynthesis O-methyltransferase [Methylobacter
          tundripaludum SV96]
 gi|307734589|gb|EFO05440.1| ubiquinone biosynthesis O-methyltransferase [Methylobacter
          tundripaludum SV96]
          Length = 239

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

Query: 1  MTMNNKSHSLKTILSHYKIIPKKYM---GQNF--LLDLNILKK--IAESSGSLDGITVIE 53
          MT  N  H     +  +  + +++    G+ F  L D+N L+   I   +    G  +++
Sbjct: 5  MTATNNVHP--HEIHKFGSMAERWWDTQGE-FKTLHDINPLRLQFIQRYADI-AGKRIVD 60

Query: 54 IGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
          +G G G LT+ L   GA  +  I+  +    I
Sbjct: 61 VGCGGGILTEGLAKHGADAL-GIDLSEDLIDI 91


>gi|284107232|ref|ZP_06386373.1| hypothetical methyltransferase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829979|gb|EFC34258.1| hypothetical methyltransferase [Candidatus Poribacteria sp. WGA-A3]
          Length = 475

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 21/126 (16%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF--FPILKDIS-SQHPNRLEIIQDDALK 106
            V+++G G G LT          V  +  D+      + +  + S+H + +     D   
Sbjct: 94  RVLDVGCGVGILTTW-YAACFPNVTFLGIDRSLQSIEVARQFAQSRHLDNVSFRHCDI-- 150

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNW-----ISADTWPPFWESLTLLFQKEVGER 161
                         I       + T+ LF       + + +W  F        Q+E+ ER
Sbjct: 151 ----------PQHEIPGTFDTIVSTQALFQSESDPGLPSRSWTTFERDRDARQQRELEER 200

Query: 162 ITAQKN 167
                 
Sbjct: 201 TGIGPR 206


>gi|262301091|gb|ACY43138.1| arg methyltransferase [Pedetontus saltator]
          Length = 246

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
               G  V++IG G G L+      GA KVI IE         K I   +   + + I++
Sbjct: 19  HLFKGKIVLDIGCGTGILSMFAAKAGAAKVIGIEC-SNIVEYAKQIVEANHLSDTVTIVK 77

Query: 102 DDALKVDFEKFFNISSPIRII 122
               KV+  +  +    + II
Sbjct: 78  G---KVEDVELPDGIKHVDII 95


>gi|257437590|ref|ZP_05613345.1| ribosomal protein L11 methyltransferase [Faecalibacterium
           prausnitzii A2-165]
 gi|257199897|gb|EEU98181.1| ribosomal protein L11 methyltransferase [Faecalibacterium
           prausnitzii A2-165]
          Length = 304

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
               G  V++IG G G L    L LGA     ++ D        + ++     ++L ++ 
Sbjct: 164 RVRGGERVLDIGTGSGILAIAALKLGAGSAEGVDIDPVAVRTAGENAALNGVADKLTVLV 223

Query: 102 DD 103
            D
Sbjct: 224 GD 225


>gi|258539802|ref|YP_003174301.1| methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|257151478|emb|CAR90450.1| Methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 241

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
           A  +       V+++ AG G +   L      +V ++E   +   + +   + +    ++
Sbjct: 33  ANFAQIKRHSRVVDLAAGNGAVGLFLARKTDNRVTMVELQPRLADMARRSVALNALANVD 92

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + + D    D  KF    S   +  N PY
Sbjct: 93  VHEGDL--ADTTKFVAKDSVDVVTCNPPY 119


>gi|253995666|ref|YP_003047730.1| tRNA (guanine-N(7)-)-methyltransferase [Methylotenera mobilis JLW8]
 gi|253982345|gb|ACT47203.1| tRNA (guanine-N(7)-)-methyltransferase [Methylotenera mobilis JLW8]
          Length = 239

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 19/149 (12%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
              D   ++EIG G G  T  +  +      +           +LK I     N + +IQ
Sbjct: 63  NRADSKKILEIGFGMGETTAKIAQVLPDCDFLAAEVHTPGVGALLKLIQENELNNIRVIQ 122

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D ++V      +               G+    +    D W         L Q E  + 
Sbjct: 123 HDVVEVLHNMVAD---------------GSLDGVHIFFPDPWHKKRHHKRRLIQAEFVQL 167

Query: 162 ITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
           +  +      G L V T W+  A  + ++
Sbjct: 168 LCTKL--KAGGYLHVATDWQEYAEWVLEV 194


>gi|261420782|ref|YP_003254464.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y412MC61]
 gi|319768452|ref|YP_004133953.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y412MC52]
 gi|261377239|gb|ACX79982.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y412MC61]
 gi|317113318|gb|ADU95810.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y412MC52]
          Length = 293

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISS 91
           L +LK++         I V+++G G G +   L L   A  V   +  +    + ++ + 
Sbjct: 103 LGVLKRVPRLFAGRKRIDVVDVGTGSGAIAVTLALENKALSVTATDISEAALAVARENAR 162

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +    +  +  D L+      + +     +++N PY
Sbjct: 163 RLGANVSFLCGDLLQPIMAMGWTVD---VVVSNPPY 195


>gi|209545650|ref|YP_002277879.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533327|gb|ACI53264.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 226

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 20/161 (12%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L +  I  ++ + +        + +GAG G L   LL     +V  +E D     I K  
Sbjct: 70  LTEPRIAGRMVQIAAPQAAQRALVVGAGTGYL-AALLARLELQVTALESDAALSAIGKAF 128

Query: 90  SSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
            +     +  +                        +  +   R + + +           
Sbjct: 129 CAVEAPGVTWVDG--------PLQAGDPAHAPFDLIVIDGAVREVPHALPGQLAEHGRIV 180

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDI 190
             +  Q  V     A+                     +FD+
Sbjct: 181 CVIWPQGGVASACIAEP----------TAQGLA-VRRVFDV 210


>gi|170761314|ref|YP_001787874.1| O-methyltransferase family protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408303|gb|ACA56714.1| O-methyltransferase family protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 218

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 8/137 (5%)

Query: 43  SGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
                   ++E+G   G  ++   L + G   +  IE+D +   I K+   ++   ++++
Sbjct: 51  ISVKKPKKILELGTAIGYSSIFMSLSSKGECNITTIERDDKMIEIAKNNIEKYSFKDKIK 110

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP----FWESLTLLF 154
           IIQ D L++                   YN         ++ D         +  +    
Sbjct: 111 IIQGDCLEILKNLEDKYDMIFMDAGKGHYNEFLPYCLKLLNKDGIIIADNVLFRGMVAND 170

Query: 155 QKEVGERITAQKNSPHY 171
           +  +  +IT  K    Y
Sbjct: 171 ELVIRRKITIVKRMRKY 187


>gi|161612639|ref|YP_001586604.1| hypothetical protein SPAB_00334 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362003|gb|ABX65771.1| hypothetical protein SPAB_00334 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 268

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQH--PNRLE 98
           +   D   +++IG G G L  ML       V    +E D       ++  +    P+R+ 
Sbjct: 63  APVADVKRILDIGTGSGLLALMLAQRTDDNVPIDAVELDAGAAMQAQENVAHSPWPHRIT 122

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  DD  +    +         II+N PY 
Sbjct: 123 VHTDDIQRWAPRQTVRFD---LIISNPPYY 149


>gi|254828297|ref|ZP_05232984.1| methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258600689|gb|EEW14014.1| methyltransferase [Listeria monocytogenes FSL N3-165]
          Length = 197

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI--LKDISSQHPNRLE 98
          ++       +++++GAG G LT     L    V  ++ D +   +  LK   +  PN   
Sbjct: 36 QAMPIGKTASILDLGAGTGFLTIPAAKLVENTVFALDLDAKMLELIELKAKEACLPNVET 95

Query: 99 I 99
          +
Sbjct: 96 L 96


>gi|148978209|ref|ZP_01814739.1| protein-L-isoaspartate O-methyltransferase [Vibrionales bacterium
           SWAT-3]
 gi|145962631|gb|EDK27907.1| protein-L-isoaspartate O-methyltransferase [Vibrionales bacterium
           SWAT-3]
          Length = 208

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLELQQDSRVLEIGTGSGYQTAVLAQL-VDHVYSVER----IKSLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+         D  + ++   P   I
Sbjct: 116 RLKQLDFYNISTKHGDGWQGWSSKGPFDAI 145


>gi|119872797|ref|YP_930804.1| methyltransferase type 11 [Pyrobaculum islandicum DSM 4184]
 gi|119674205|gb|ABL88461.1| Methyltransferase type 11 [Pyrobaculum islandicum DSM 4184]
          Length = 165

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 36 LKKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
          +++I +     D G TV+E+GAG GN   +LL     +V  I+ D      L+      
Sbjct: 2  IEEIVKDLEDFDLGHTVVEVGAGYGNT-TLLLLRRGLEVCAIDIDPGAISYLRSAFRDF 59


>gi|71907367|ref|YP_284954.1| hypothetical protein Daro_1737 [Dechloromonas aromatica RCB]
 gi|71846988|gb|AAZ46484.1| hypothetical protein Daro_1737 [Dechloromonas aromatica RCB]
          Length = 233

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +  + G  V+EIG G G  TQ L   G   + V+  D    P L+        RL +   
Sbjct: 30  AALVPGKRVLEIGCGVGFATQALARRG---LAVLSIDS-LEPCLEAT------RLRVAAS 79

Query: 103 DA 104
           D 
Sbjct: 80  DV 81


>gi|16761501|ref|NP_457118.1| hypothetical protein STY2835 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140802|ref|NP_804144.1| hypothetical protein t0268 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052329|ref|ZP_03345207.1| hypothetical protein Salmoneentericaenterica_04976 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425268|ref|ZP_03358018.1| hypothetical protein SentesTyphi_06008 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585705|ref|ZP_03367531.1| hypothetical protein SentesTyph_32327 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213646346|ref|ZP_03376399.1| hypothetical protein SentesTy_02809 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213865165|ref|ZP_03387284.1| hypothetical protein SentesT_35611 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289825493|ref|ZP_06544700.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|81853238|sp|Q8Z4J9|TRMN6_SALTI RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|25325409|pir||AC0830 conserved hypothetical protein STY2835 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503801|emb|CAD02791.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136427|gb|AAO67993.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 245

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQH--PNRLE 98
           +   D   +++IG G G L  ML         V  +E D       ++  +    P+R+ 
Sbjct: 40  APVADVKRILDIGTGSGLLALMLAQRTDDSVPVDAVELDAGAAMQAQENVAHSPWPHRIT 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  DD  +    +         II+N PY 
Sbjct: 100 VHTDDIQRWAPRQTVRFD---LIISNPPYY 126


>gi|89069100|ref|ZP_01156473.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Oceanicola
           granulosus HTCC2516]
 gi|89045273|gb|EAR51339.1| Cyclopropane-fatty-acyl-phospholipid synthase CfaS [Oceanicola
           granulosus HTCC2516]
          Length = 402

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
             + +  G+  G  V+EIG G G   +        KV  +   ++ +    +    +   
Sbjct: 175 ASMVDQMGAKPGDHVLEIGCGWGGFAEYAARERGLKVTGLTISREQYDYAVERIRKAGLE 234

Query: 95  NRLEIIQDD 103
            ++E    D
Sbjct: 235 GQVEFRLQD 243


>gi|324512110|gb|ADY45026.1| Unknown [Ascaris suum]
          Length = 499

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 11/59 (18%)

Query: 36  LKKIAESSGSLDG------ITVIEIGAGPGNLTQMLLTL-----GARKVIVIEKDQQFF 83
           ++++  +   L          V++IGAG G+L++ +           +V  IE D++  
Sbjct: 135 IERVVHAIEILRRATSPSFDEVLDIGAGIGHLSRQIAFRFGCSSNPLRVATIEADEELV 193


>gi|325002584|ref|ZP_08123696.1| O-methyltransferase family 3 [Pseudonocardia sp. P1]
          Length = 210

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 53  EIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDI---SSQHPNRLEIIQDDALKV 107
           EIG G G     LL   A    +  I+ D +     K     +   P RL +I   AL V
Sbjct: 58  EIGTGAGVSGLYLLRGMAADGVLTTIDVDPELQRAAKRTAIGAGYGPGRLRLINGMALDV 117

Query: 108 DFEKFFNISSPIRIIANLP 126
              +  +    + +   +P
Sbjct: 118 -LPRLTDGGYDLVVADAVP 135


>gi|321225997|gb|EFX51050.1| putative O-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 268

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQH--PNRLE 98
           +   D   +++IG G G L  ML       V    +E D       ++  +    P+R+ 
Sbjct: 63  APVADVKRILDIGTGSGLLALMLAQRTDDNVPIDAVELDAGAAMQAQENVAHSPWPHRIT 122

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  DD  +    +         II+N PY 
Sbjct: 123 VHTDDIQRWAPRQTVRFD---LIISNPPYY 149


>gi|310821830|ref|YP_003954188.1| hypothetical protein STAUR_4581 [Stigmatella aurantiaca DW4/3-1]
 gi|309394902|gb|ADO72361.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 250

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 33/170 (19%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQDDALK 106
            +I++G G G +  +L    G R+V  +E   + + + +     ++   ++ ++Q D  +
Sbjct: 53  RLIDLGTGSGIIPLVLAKRLGLREVTGLELQPRLYSLAERNVYLNRCEQQVTLVQGDLRQ 112

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI---- 162
           V   + F   S   ++ N PY           +  T          + + EV   +    
Sbjct: 113 V--SRLFAAGSFCHVLCNPPYR----------ACATGRSSVMMERAIARHEVACSLPDVA 160

Query: 163 -TAQKNSPHYGRLS-------------VLTGWRTKATMMFDISPHVFFPS 198
             A+      G LS             VL   R +   +  + P    P+
Sbjct: 161 RAARHLLTPRGGLSLVYPAARFAELVAVLREHRLEPKTVRMVHPRAERPA 210


>gi|262199925|ref|YP_003271134.1| hemolysin A [Haliangium ochraceum DSM 14365]
 gi|262083272|gb|ACY19241.1| hemolysin A [Haliangium ochraceum DSM 14365]
          Length = 282

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 16/186 (8%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +     G+  ++IGA  G  T +LL  G R+V  I+     +  L          + + +
Sbjct: 76  AIDP-AGLVALDIGASTGGFTDVLLRRGCRRVYAIDV---GYGQLAWSLRTDERVVVLER 131

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIG--TRLLFNWISADTWPPFWESLTLLFQKEVG 159
           ++   +D  K       + +I     ++     ++   +      P      +  Q EVG
Sbjct: 132 ENIRHIDPAKVPEPGD-LAVIDVSFISLTLVLPMVATLLRPPPGKPII--ALIKPQFEVG 188

Query: 160 ERITAQKN-----SPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP 214
           +    +       S   G +        +    F + P    P       V +      P
Sbjct: 189 KGQVGRGGVVRDESLRRGAID-KIQSWAR-EHGFAVGPVATSPVRGPAGNVEYLQLLHTP 246

Query: 215 IPCCLE 220
                +
Sbjct: 247 AVGAED 252


>gi|254465704|ref|ZP_05079115.1| methyltransferase, FkbM family protein [Rhodobacterales bacterium
          Y4I]
 gi|206686612|gb|EDZ47094.1| methyltransferase, FkbM family protein [Rhodobacterales bacterium
          Y4I]
          Length = 233

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 45 SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILK 87
                VIE+GAG G ++  L + LG   V+ +E D      ++
Sbjct: 44 LEKDDRVIELGAGIGFISSFLGVNLGVENVLCVEADPTLCAFIQ 87


>gi|160942758|ref|ZP_02089999.1| hypothetical protein FAEPRAM212_00235 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445923|gb|EDP22926.1| hypothetical protein FAEPRAM212_00235 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103833|emb|CBL01377.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 304

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQD 102
              G  V++IG G G L    L LGA     ++ D        + ++     ++L ++  
Sbjct: 165 VRGGERVLDIGTGSGILAIAALKLGAASAEGVDIDPVAVRTAGENAALNGVQDKLTVLVG 224

Query: 103 D 103
           D
Sbjct: 225 D 225


>gi|153938794|ref|YP_001391853.1| O-methyltransferase family protein [Clostridium botulinum F str.
           Langeland]
 gi|152934690|gb|ABS40188.1| O-methyltransferase family protein [Clostridium botulinum F str.
           Langeland]
 gi|295319879|gb|ADG00257.1| O-methyltransferase family protein [Clostridium botulinum F str.
           230613]
          Length = 218

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 8/137 (5%)

Query: 43  SGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
                   ++E+G   G  ++   L + G   +  IE+D +   I K+   ++   ++++
Sbjct: 51  ISVKKPKKILELGTAIGYSSIFMSLSSKGECNITTIERDDKMIEIAKNNIEKYSFKDKIK 110

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP----FWESLTLLF 154
           IIQ D L++                   YN         ++ D         +  +    
Sbjct: 111 IIQGDCLEILKNLEDKYDMIFMDAGKGHYNEFLPYCLKLLNKDGIIIADNVLFRGMVAND 170

Query: 155 QKEVGERITAQKNSPHY 171
           +  +  +IT  K    Y
Sbjct: 171 ELVIRRKITIVKRMRKY 187


>gi|119487949|ref|ZP_01621446.1| hypothetical protein L8106_28836 [Lyngbya sp. PCC 8106]
 gi|119455525|gb|EAW36663.1| hypothetical protein L8106_28836 [Lyngbya sp. PCC 8106]
          Length = 246

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-----PNRLE 98
                  ++++G GPG  T  LL L   K+I ++      P L+ +  +       +R+E
Sbjct: 33  DLPPQPLILDLGCGPGMQTFHLLELSNGKIIAVD---NHQPFLEQLYQEAVRKGVQDRVE 89

Query: 99  IIQDD--ALKVDFEKF 112
           ++  D  AL+ +   F
Sbjct: 90  VVNADMSALEFNPNSF 105


>gi|126180215|ref|YP_001048180.1| methyltransferase type 12 [Methanoculleus marisnigri JR1]
 gi|125863009|gb|ABN58198.1| Methyltransferase type 12 [Methanoculleus marisnigri JR1]
          Length = 279

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
                  TV+++GAG G L   +    A  V  ++  +    +L++  + 
Sbjct: 57  LDIRPEDTVLDMGAGTGRLAVPIARTAAH-VTALDPSEGMLSVLRERMAA 105


>gi|16263295|ref|NP_436088.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
           [Sinorhizobium meliloti 1021]
 gi|307304386|ref|ZP_07584137.1| protein-L-isoaspartate O-methyltransferase [Sinorhizobium meliloti
           BL225C]
 gi|307318093|ref|ZP_07597529.1| protein-L-isoaspartate O-methyltransferase [Sinorhizobium meliloti
           AK83]
 gi|14523973|gb|AAK65500.1| protein-L-isoaspartate O-methyltransferase [Sinorhizobium meliloti
           1021]
 gi|306896134|gb|EFN26884.1| protein-L-isoaspartate O-methyltransferase [Sinorhizobium meliloti
           AK83]
 gi|306902588|gb|EFN33182.1| protein-L-isoaspartate O-methyltransferase [Sinorhizobium meliloti
           BL225C]
          Length = 223

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 19  IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           I   K + Q F++       + +         V+EIG G G  T +L  L A K+  +E 
Sbjct: 69  IGFDKTVSQPFMV-----ALMTDLLAPKPHEAVLEIGTGLGYQTAILAQL-AGKIWSVEI 122

Query: 79  DQQFFPILKDISSQHP-NRLEIIQDDALKVDFE 110
            ++F    + +      + + I   D  +   E
Sbjct: 123 IEEFASHAEALLHGLGMSNVGIRIGDGSRGWPE 155


>gi|56421912|ref|YP_149230.1| protoporphyrinogen oxidase [Geobacillus kaustophilus HTA426]
 gi|56381754|dbj|BAD77662.1| protoporphyrinogen oxidase [Geobacillus kaustophilus HTA426]
          Length = 293

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISS 91
           L +LK++         I V+++G G G +   L L   A  V   +  +    + ++ + 
Sbjct: 103 LGVLKRVPRLFAGRKRIDVVDVGTGSGAIAVTLALENKALSVTATDISEAALAVARENAR 162

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +    +  +  D L+      + +     +++N PY
Sbjct: 163 RLGANVSFLCGDLLQPIMAMGWTVD---VVVSNPPY 195


>gi|50553374|ref|XP_504098.1| YALI0E18282p [Yarrowia lipolytica]
 gi|49649967|emb|CAG79693.1| YALI0E18282p [Yarrowia lipolytica]
          Length = 326

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNR 96
           I  +        V+++G G G L+      GA+ V+ ++       + + I   +   ++
Sbjct: 37  ILRNRDLFKDKIVLDVGCGTGILSMFAAQAGAKHVMGVDM-SNIIEMARKIVDLNGLSDK 95

Query: 97  LEIIQD 102
           + +IQ 
Sbjct: 96  ITLIQG 101


>gi|116753346|ref|YP_842464.1| protein of unknown function Met10 [Methanosaeta thermophila PT]
 gi|116664797|gb|ABK13824.1| methyltransferase [Methanosaeta thermophila PT]
          Length = 328

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            +++  +     G  V+++ AG G  + ++   GAR VI I+K+     +LK+ +  +  
Sbjct: 155 TERLRVAEQVRPGDLVVDMFAGVGPFSLLMAKRGAR-VIAIDKNPCAAKLLKENARMNRL 213

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130
            +EI + DA  +  E   + +    ++ NLP++  
Sbjct: 214 DVEIREGDASSLT-EDLADKAD--HVVMNLPHSAS 245


>gi|127511866|ref|YP_001093063.1| methyltransferase type 11 [Shewanella loihica PV-4]
 gi|126637161|gb|ABO22804.1| Methyltransferase type 11 [Shewanella loihica PV-4]
          Length = 223

 Score = 35.9 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           V+EIGAG G    +       ++++ E D     +L+   ++ P+
Sbjct: 45 RVLEIGAGTGASLPLYPKGADLELVLTEPDIDMMRLLEKAVAELPD 90


>gi|321442019|gb|ADW85424.1| arg methyltransferase [Pryeria sinica]
          Length = 244

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G  V++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKVVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLSDTIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|307544769|ref|YP_003897248.1| ribosomal protein L11 methyltransferase [Halomonas elongata DSM
           2581]
 gi|307216793|emb|CBV42063.1| ribosomal protein L11 methyltransferase [Halomonas elongata DSM
           2581]
          Length = 304

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G LD   V+++G G G L    L LGAR     + D Q     +D + ++      + + 
Sbjct: 163 GELDDREVLDVGCGSGILAIAALRLGARHATGTDIDPQALTASRDNAERNG-----VDET 217

Query: 104 ALKVDFEKFFNISSPIRII 122
           AL++++ +     +   ++
Sbjct: 218 ALRLEYPESLEAEARFPLV 236


>gi|295113545|emb|CBL32182.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus sp. 7L76]
 gi|315161811|gb|EFU05828.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0645]
          Length = 277

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|295425335|ref|ZP_06818038.1| tRNA (guanine-N(7)-)-methyltransferase [Lactobacillus amylolyticus
           DSM 11664]
 gi|295065111|gb|EFG56016.1| tRNA (guanine-N(7)-)-methyltransferase [Lactobacillus amylolyticus
           DSM 11664]
          Length = 218

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITV-IEIGAGPG 59
           M + NK  ++K +++ +   P+  + QN   D    KKI  ++   +   + IE+G+G G
Sbjct: 1   MRLRNKPWAIK-LVNEH---PESVL-QNP--DPE--KKIDWAARFGNDHPIEIEVGSGKG 51

Query: 60  N-LTQMLLTLGARKVIVIEKDQQFFP-ILKDISSQHPNRLEIIQDDALKVD 108
           + +T +      +  + +E        IL+    +  + L+I++ DA  +D
Sbjct: 52  HFITTLAEKHPEKNYVALELQTTAAGIILRTKLEKGLDNLQILRGDAANID 102


>gi|290961780|ref|YP_003492962.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22]
 gi|260651306|emb|CBG74428.1| putative SAM-dependent methyltransferase [Streptomyces scabiei
           87.22]
          Length = 403

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
            G   G  V +IG+G G         GA  VI ++ D +        + +   +L+++  
Sbjct: 250 LGPRVGDLVWDIGSGSGAFATEAARCGA-AVIAVDHDPEACGRTTLAARRFGVQLQVVHG 308

Query: 103 DA 104
            A
Sbjct: 309 AA 310


>gi|229520952|ref|ZP_04410374.1| predicted O-methyltransferase [Vibrio cholerae TM 11079-80]
 gi|229342185|gb|EEO07181.1| predicted O-methyltransferase [Vibrio cholerae TM 11079-80]
 gi|259156558|gb|ACV96501.1| methyltransferase [Vibrio fluvialis Ind1]
          Length = 240

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK 106
           T+++IG G G L+ M         +  ++ +Q  +   +    Q P   R+E    D L 
Sbjct: 45  TILDIGCGTGLLSLMCAQRFPHAHITALDIEQSAYQAAEHNRQQSPWAERIECQHADILH 104

Query: 107 VDFEKFFNISSPIRIIANLPYNIG 130
               K F       II N PY   
Sbjct: 105 WQPSKRF-----AAIICNPPYFNS 123


>gi|259909011|ref|YP_002649367.1| Putative cyclopropane-fatty-acyl-phospholipid synthase [Erwinia
           pyrifoliae Ep1/96]
 gi|224964633|emb|CAX56147.1| Putative cyclopropane-fatty-acyl-phospholipid synthase [Erwinia
           pyrifoliae Ep1/96]
 gi|283479022|emb|CAY74938.1| cyclopropane-fatty-acyl-phospholipid synthase [Erwinia pyrifoliae
           DSM 12163]
          Length = 414

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/69 (11%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
           +++ +         ++EIG+G G + +        +V      ++ +   +    ++   
Sbjct: 182 QRLCDRLALGRQDHLLEIGSGWGAMAEYAARQYGCRVTTTTISREQYEYCRQRIAAAGLS 241

Query: 95  NRLEIIQDD 103
           +R+ ++ +D
Sbjct: 242 DRVTVLCED 250


>gi|161525642|ref|YP_001580654.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|160343071|gb|ABX16157.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 276

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 14/140 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
            +        ++EIG G G  T  +         + +E  +     +LK I  Q  + + 
Sbjct: 95  NAIFGRSAPRILEIGFGMGASTAEIAANRPGDDFLGVEVHEPGVGALLKLIGEQDLSNIR 154

Query: 99  IIQDDALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           IIQ DA++V                   P     +    +    L   +++   P  +  
Sbjct: 155 IIQHDAVEVLEHMLTPESLDGVHIFFPDPWHKARHHKRRLIQPPLVAQLASRLKPGAYLH 214

Query: 150 LTLLFQ---KEVGERITAQK 166
               +Q   +++ E ++A+ 
Sbjct: 215 CATDWQNYAEQMLEVLSAEP 234


>gi|118588620|ref|ZP_01546028.1| Methyltransferase type 11 [Stappia aggregata IAM 12614]
 gi|118438606|gb|EAV45239.1| Methyltransferase type 11 [Stappia aggregata IAM 12614]
          Length = 266

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQH 93
          I ++      +       +IG G G LT+ +L + A + V+ ++  + F    ++  +  
Sbjct: 27 IAREFVSWLNAPADADWADIGCGTGALTETILDMAAPKTVVGLDLSEGFVMHAREAITDA 86

Query: 94 PNRLEI 99
            R EI
Sbjct: 87 RARFEI 92


>gi|121728405|ref|ZP_01681433.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675421|ref|YP_001216155.1| hypothetical protein VC0395_A0192 [Vibrio cholerae O395]
 gi|262169960|ref|ZP_06037650.1| predicted O-methyltransferase [Vibrio cholerae RC27]
 gi|121629339|gb|EAX61771.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|146317304|gb|ABQ21843.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227012486|gb|ACP08696.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|262021694|gb|EEY40405.1| predicted O-methyltransferase [Vibrio cholerae RC27]
          Length = 240

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK 106
           T+++IG G G L+ M         +  ++ +Q  +   +    Q P   R+E    D L 
Sbjct: 45  TILDIGCGTGLLSLMCAQRFPHAHITALDIEQSAYQAAEHNRQQSPWAERIECQHADILH 104

Query: 107 VDFEKFFNISSPIRIIANLPYNIG 130
               K F       II N PY   
Sbjct: 105 WQPSKRF-----AAIICNPPYFNS 123


>gi|332308275|ref|YP_004436126.1| methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175604|gb|AEE24858.1| methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 194

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---ISSQHPNRLEIIQD 102
                 +++ AG G L    L+  A+ V  IE D+     L+          +  +++  
Sbjct: 54  TQDSRCLDVFAGSGGLGFEALSRYAKHVTFIELDKNVARNLQQNLITLKATEDSAKVLCG 113

Query: 103 DALKV 107
           DAL  
Sbjct: 114 DALSY 118


>gi|332159074|ref|YP_004424353.1| met-10+ protein [Pyrococcus sp. NA2]
 gi|331034537|gb|AEC52349.1| met-10+ protein [Pyrococcus sp. NA2]
          Length = 278

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISS 91
           N+ +++  +S +  G  V+++ AG G+L+  +   G  KVI IEKD   F  L +    +
Sbjct: 112 NVKERVRMASVAKPGELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN 171

Query: 92  QHPNRLEIIQDDALKVDFEKFFN 114
           +  +R+     D  +   E   +
Sbjct: 172 KVEDRMSAYNMDNREFPGENIAD 194


>gi|322806893|emb|CBZ04463.1| O-methyltransferase family protein [Clostridium botulinum H04402
           065]
          Length = 218

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 43  SGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
                   ++E+G   G  ++   L + G   +  IE+D +   I K+   ++   ++++
Sbjct: 51  ISVKKPKKILELGTAIGYSSIFMSLSSNGESNITTIERDDKMIEIAKNNIEKYSFKDKIK 110

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP----FWESLTLLF 154
           IIQ D L++  +                YN         ++ D         +  +    
Sbjct: 111 IIQGDCLEILKDLDDKYDMIFMDAGKGHYNEFLPYCLKLLNKDGIIIADNVLFRGMVAND 170

Query: 155 QKEVGERITAQKNSPHY 171
           +  +  +IT  K    Y
Sbjct: 171 ELVIRRKITIVKRMRKY 187


>gi|311069146|ref|YP_003974069.1| ribosomal protein L11 methyltransferase [Bacillus atrophaeus 1942]
 gi|310869663|gb|ADP33138.1| ribosomal protein L11 methyltransferase [Bacillus atrophaeus 1942]
          Length = 311

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQD 102
              G  VI++G G G L+     LGA  V   + D        L    ++     E+ Q+
Sbjct: 173 VKKGDRVIDVGTGSGILSIGAAMLGAESVHAYDLDPVAVESARLNLKLNKVSGTAEVKQN 232

Query: 103 DALK 106
           + L 
Sbjct: 233 NLLD 236


>gi|312898502|ref|ZP_07757892.1| precorrin-6Y C5,15-methyltransferase, CbiT subunit [Megasphaera
           micronuciformis F0359]
 gi|310620421|gb|EFQ03991.1| precorrin-6Y C5,15-methyltransferase, CbiT subunit [Megasphaera
           micronuciformis F0359]
          Length = 410

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPN--R 96
                      V +IGAG G+ +  L   +   KV   E +++    L + + +  N   
Sbjct: 239 ISKLRPEADHIVYDIGAGTGSCSVELAFQVPYGKVYGFEINEE-AATLAEANKERFNACN 297

Query: 97  LEIIQDDALKVDFEKFFNISSPIRII 122
           LEII+ +AL    EK  N+  P R+ 
Sbjct: 298 LEIIRGNAL----EKIVNMPCPDRVF 319


>gi|237649844|ref|ZP_04524096.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           CCRI 1974]
 gi|237820771|ref|ZP_04596616.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           CCRI 1974M2]
          Length = 316

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     I ++    +     + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRIAQENIELNTGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|269956398|ref|YP_003326187.1| type 12 methyltransferase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305079|gb|ACZ30629.1| Methyltransferase type 12 [Xylanimonas cellulosilytica DSM 15894]
          Length = 276

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
             G  V+EIGAGPG  T  L  L A  V+
Sbjct: 45 IRPGSRVLEIGAGPGRFTTELAALSATVVV 74


>gi|206561436|ref|YP_002232201.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia cenocepacia
           J2315]
 gi|198037478|emb|CAR53414.1| putative methyltransferase [Burkholderia cenocepacia J2315]
          Length = 258

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 43/145 (29%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        ++EIG G G  T  +         + +E  +     +LK I  Q  + + 
Sbjct: 77  DAIFGRSAPRILEIGFGMGASTAEIAAHRPGDDFLGVEVHEPGVGALLKLIGEQDLSNIR 136

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V                       +    +    D W         L Q  +
Sbjct: 137 IIQHDAVEVLEHMIAP---------------ASLDGVHIFFPDPWHKARHHKRRLIQPPL 181

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
              + ++     Y   +       +
Sbjct: 182 VAHLASRLKPGAYLHCATDWQNYAE 206


>gi|197285751|ref|YP_002151623.1| hypothetical protein PMI1896 [Proteus mirabilis HI4320]
 gi|262828580|sp|B4F055|TRMN6_PROMH RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|194683238|emb|CAR43937.1| conserved hypothetical protein [Proteus mirabilis HI4320]
          Length = 252

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDIS--SQHPNRLE 98
           +      TV++IG G G +  ML     +  ++  IE D+       + +  SQ  + + 
Sbjct: 43  APITKAKTVLDIGTGSGLIALMLAQRAPQVERIDGIELDEDAALQASENAQQSQWSSLIH 102

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           I   D  +   +     +    I++N PY
Sbjct: 103 IYHHDIYQYAQQA---PTRYDLIVSNPPY 128


>gi|170747414|ref|YP_001753674.1| methyltransferase type 11 [Methylobacterium radiotolerans JCM 2831]
 gi|170653936|gb|ACB22991.1| Methyltransferase type 11 [Methylobacterium radiotolerans JCM 2831]
          Length = 229

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I ES   L G  +++IG GPG L + L+  GAR       D     + +   +    R E
Sbjct: 7   IRESLAPLAGKRIVDIGCGPGALARRLVDAGARVT---GIDPGAAALARARDAVPEARFE 63

Query: 99  IIQDDALKVDFEKF 112
               +AL      F
Sbjct: 64  AATGEALPFPDASF 77


>gi|154412539|ref|XP_001579302.1| methyltransferase [Trichomonas vaginalis G3]
 gi|121913507|gb|EAY18316.1| methyltransferase, putative [Trichomonas vaginalis G3]
          Length = 217

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 11/101 (10%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD----ISSQHPNRLEI 99
           G ++G  V ++G G G L+   L +GA++V   + D       K     +    P  +  
Sbjct: 45  GDIEGKIVADLGCGCGILSIACLVMGAKEVHSFDLDPVSIEAAKRNLDLLEFDEPPPIFF 104

Query: 100 IQDDALKVDFEKFFN---ISSPI----RIIANLPYNIGTRL 133
            + D  K+  E+ F+   ++ P     + +      + +++
Sbjct: 105 HECDVTKLGDEQKFDTVVMNPPFGTRNKGVDMTFLQVASKI 145


>gi|114327124|ref|YP_744281.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
 gi|114315298|gb|ABI61358.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
          Length = 188

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
            LDG TV++  AG G L    L+ GA++ ++IE+D      L+    +     R  I+  
Sbjct: 46  LLDGATVLDGFAGTGALGLEALSRGAKEAVLIERDPAALRALRANVTALGAGERARILAA 105

Query: 103 DAL 105
           D L
Sbjct: 106 DML 108


>gi|10639336|emb|CAC11338.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 174

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPIL 86
          +FL DL  +  I +  G      ++++G G G     +L+      V  I+       I 
Sbjct: 5  HFLRDLYAI--IVDDVGRFKPSAILDVGCGTGTADYFILSAFPDISVDCIDPSPYMISIA 62

Query: 87 KDISSQHPNRLE 98
          +   S+  +R+ 
Sbjct: 63 RKKLSKFGSRVR 74


>gi|332686845|ref|YP_004456619.1| ribosomal protein L11 methyltransferase [Melissococcus plutonius
           ATCC 35311]
 gi|332370854|dbj|BAK21810.1| ribosomal protein L11 methyltransferase [Melissococcus plutonius
           ATCC 35311]
          Length = 315

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +    G T+I++G G G L+     LGA+K+   + D+      K+
Sbjct: 171 AHLRGGETLIDVGTGSGVLSIAGKYLGAKKIYAYDLDEVAVTAAKE 216


>gi|332670298|ref|YP_004453306.1| tRNA (adenine-N(1)-)-methyltransferase [Cellulomonas fimi ATCC 484]
 gi|332339336|gb|AEE45919.1| tRNA (adenine-N(1)-)-methyltransferase [Cellulomonas fimi ATCC 484]
          Length = 349

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH 93
           +I        G  V+E G G G LT  LL        +  IE+ + F  I +      
Sbjct: 100 QIVTMGDIYPGARVVEAGVGSGALTMSLLRAVGDGGSLHSIERREDFADIARANVEGF 157


>gi|325928537|ref|ZP_08189725.1| Lipopolysaccharide biosynthesis protein [Xanthomonas perforans
           91-118]
 gi|325541076|gb|EGD12630.1| Lipopolysaccharide biosynthesis protein [Xanthomonas perforans
           91-118]
          Length = 1415

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
            V+E+G+G G +++ L  +GA  +  +E   +   I        PN + ++  D L+
Sbjct: 88  RVLEVGSGCGAISRYLGEIGA-SLTALEGSSRRAQITASRCRDLPN-VRVVN-DVLE 141


>gi|297526451|ref|YP_003668475.1| N-6 DNA methylase [Staphylothermus hellenicus DSM 12710]
 gi|297255367|gb|ADI31576.1| N-6 DNA methylase [Staphylothermus hellenicus DSM 12710]
          Length = 384

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 16/107 (14%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFL---LDLNILKKIAESSGSLDGITVIEIGAG 57
           M MN      + I+  Y        GQ F    +   ++  I E       I ++E   G
Sbjct: 4   MIMN------RKIMKKY------IWGQYFTRGEIVRKVIDLILEFKKYDKNIKILEPAFG 51

Query: 58  PGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQHPNRLEIIQDD 103
            GN  ++L   G + +   E D +F    +D        + ++I  +
Sbjct: 52  TGNFIRVLKEKGFKNIEGCEIDPRFTKTPQDFFLYPLEKKFDLIIGN 98


>gi|266619606|ref|ZP_06112541.1| methyltransferase domain protein [Clostridium hathewayi DSM 13479]
 gi|288868828|gb|EFD01127.1| methyltransferase domain protein [Clostridium hathewayi DSM 13479]
          Length = 213

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +  +I+          V+E+G G G L Q L              ++   +L +
Sbjct: 64  VAAEISRRLDIQKEDKVLEVGCGAGALAQYLDCDYTGIDYSPTLVRRHIELLHN 117


>gi|255066137|ref|ZP_05317992.1| ribosomal protein L11 methyltransferase [Neisseria sicca ATCC
           29256]
 gi|255049682|gb|EET45146.1| ribosomal protein L11 methyltransferase [Neisseria sicca ATCC
           29256]
          Length = 295

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G +V++ G G G LT   L LGA   + ++ D+Q     KD ++Q+    +    D 
Sbjct: 161 LKGGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAIRASKDNAAQNNVDAQFYLPDG 220

Query: 105 L 105
           L
Sbjct: 221 L 221


>gi|284028686|ref|YP_003378617.1| type 12 methyltransferase [Kribbella flavida DSM 17836]
 gi|283807979|gb|ADB29818.1| Methyltransferase type 12 [Kribbella flavida DSM 17836]
          Length = 259

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 47  DGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
               V+++  GPG+LT+ +L    A +V+ ++ D     + +D  +   +R+ ++
Sbjct: 53  PPRRVLDLCCGPGSLTERVLARFPAAEVVAVDIDPLLLDLARDRFAG-DHRVSVL 106


>gi|256376354|ref|YP_003100014.1| tRNA methyltransferase complex GCD14 subunit [Actinosynnema mirum
           DSM 43827]
 gi|255920657|gb|ACU36168.1| tRNA methyltransferase complex GCD14 subunit [Actinosynnema mirum
           DSM 43827]
          Length = 275

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPI----LKDI 89
             +I        G  V+E GAG G LT  LL     K  V   E  Q         ++  
Sbjct: 89  AAQIVMYGDVFPGARVLEAGAGSGALTCSLLRAVGEKGSVTSYEVRQDHADHAIRNVEQF 148

Query: 90  SSQHPNRLEIIQDD 103
             + P    +  DD
Sbjct: 149 FGERPANWSLTVDD 162


>gi|226359950|ref|YP_002777728.1| hypothetical protein ROP_05360 [Rhodococcus opacus B4]
 gi|226238435|dbj|BAH48783.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 250

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G   ++IGAG G  T  LL  G   V  +E   +    L+     HP+ + I +   
Sbjct: 35  LERGRRALDIGAGTGQATGPLLAAG-LDVTAVEPGPRLAARLRR---AHPDAVVINE--- 87

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            + +  +  +    I I A   + I   ++   I     P 
Sbjct: 88  -RAEDVELPDSGFDIAIAATSIHWIDLDIVLPKIHRALTPD 127


>gi|261364176|ref|ZP_05977059.1| ribosomal protein L11 methyltransferase [Neisseria mucosa ATCC
           25996]
 gi|288567782|gb|EFC89342.1| ribosomal protein L11 methyltransferase [Neisseria mucosa ATCC
           25996]
          Length = 295

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G +V++ G G G LT   L LGA   + ++ D+Q     KD ++Q+    +    D 
Sbjct: 161 LKGGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAIRASKDNAAQNNVDAQFYLPDG 220

Query: 105 L 105
           L
Sbjct: 221 L 221


>gi|189349632|ref|YP_001945260.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|221201141|ref|ZP_03574181.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia multivorans
           CGD2M]
 gi|221206406|ref|ZP_03579419.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia multivorans
           CGD2]
 gi|189333654|dbj|BAG42724.1| tRNA (guanine-N7-)-methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221173715|gb|EEE06149.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia multivorans
           CGD2]
 gi|221178991|gb|EEE11398.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia multivorans
           CGD2M]
          Length = 254

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 14/140 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
            +        ++EIG G G  T  +         + +E  +     +LK I  Q  + + 
Sbjct: 73  NAIFGRSAPRILEIGFGMGASTAEIAANRPGDDFLGVEVHEPGVGALLKLIGEQDLSNIR 132

Query: 99  IIQDDALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           IIQ DA++V                   P     +    +    L   +++   P  +  
Sbjct: 133 IIQHDAVEVLEHMLTPESLDGVHIFFPDPWHKARHHKRRLIQPPLVAQLASRLKPGAYLH 192

Query: 150 LTLLFQ---KEVGERITAQK 166
               +Q   +++ E ++A+ 
Sbjct: 193 CATDWQNYAEQMLEVLSAEP 212


>gi|167382139|ref|XP_001735989.1| protein arginine N-methyltransferase 1 [Entamoeba dispar SAW760]
 gi|165901792|gb|EDR27804.1| protein arginine N-methyltransferase 1, putative [Entamoeba dispar
           SAW760]
          Length = 328

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE---KDQQFFPILKDISSQHPNRLEIIQ 101
            +    V+++G G G L+      GA+ V  +E     +Q   I+K   + + N + +IQ
Sbjct: 49  VVKDKIVLDVGCGTGILSMFAARNGAKHVYAVEMSSVRKQAAEIIK--LNGYENVITLIQ 106

Query: 102 D 102
            
Sbjct: 107 G 107


>gi|163761063|ref|ZP_02168140.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43]
 gi|162281614|gb|EDQ31908.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43]
          Length = 338

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L+++  +  +     +++   G G  T  +L  GA  VI  ++D +      ++++ 
Sbjct: 21  PVLLREVLAALEAAPSQLIVDGTFGAGGYTAAILEAGA-SVIGFDRDPEAIANGAEMAAA 79

Query: 93  HPNRLEIIQDDA 104
              RL++I    
Sbjct: 80  SGGRLKLIHAQF 91


>gi|156102032|ref|XP_001616709.1| Probable protein arginine N-methyltransferase [Plasmodium vivax
           SaI-1]
 gi|148805583|gb|EDL46982.1| Probable protein arginine N-methyltransferase, putative [Plasmodium
           vivax]
          Length = 400

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             I ++   +    V+++G G G L+      GA+ V  IEK
Sbjct: 107 DAIRKNEHLIKDKIVLDVGCGTGILSFFAAMSGAKHVYSIEK 148


>gi|145483771|ref|XP_001427908.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394991|emb|CAK60510.1| unnamed protein product [Paramecium tetraurelia]
          Length = 460

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            ++ + IA+     + + + ++G G G  T  L       VI +E + +   + K     
Sbjct: 132 DHVARYIAK--RLKEFVIITDLGCGVGGNTVQLAKEC-HYVIGVEIESKLIELAKKNCHH 188

Query: 93  HPNRLEIIQDDALKVDFEK 111
               +++I  D   ++  K
Sbjct: 189 SRVNVDLINADIFTLNNLK 207


>gi|117620857|ref|YP_855648.1| cyclopropane-fatty-acyl-phospholipid synthase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562264|gb|ABK39212.1| cyclopropane-fatty-acyl-phospholipid synthase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 418

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L+ I E         ++EIG G G L          +V      +      K+  ++   
Sbjct: 176 LRTICERLELGPDDHLLEIGTGWGGLAVYAARHYGCRVTTTTISRAQHDYAKEWIAREGL 235

Query: 94  PNRLEIIQDDALKVD 108
            +R+ ++ +D  K++
Sbjct: 236 GDRITLLLEDYRKLE 250


>gi|15603768|ref|NP_246842.1| BioC [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12722335|gb|AAK03987.1| BioC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 251

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                    +EIG G G LT+ L++    +   +        + + + S  P        
Sbjct: 41  IDRQAFQRALEIGCGTGGLTKQLMSQLQVEHWELN---DLCDMREHLQSVLPQPFHFHCG 97

Query: 103 DALKVDFEKFFNI 115
           DA ++ F + +++
Sbjct: 98  DAEQLPFPQQYDL 110


>gi|56479254|ref|YP_160843.1| phosphatidylethanolamine N-methyltransferase [Aromatoleum
           aromaticum EbN1]
 gi|56315297|emb|CAI09942.1| Phosphatidylethanolamine N-methyltransferase [Aromatoleum
           aromaticum EbN1]
          Length = 205

 Score = 35.9 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +++ ++     G  V+E+G G G   +        +V  I+              +H  R
Sbjct: 30  RRLVQALNCRPGEEVLEVGVGTGLSLRHYPRYA--RVTGIDLSPHMLARASLQVQRHDLR 87

Query: 97  -LEIIQDDALKVDFEKF-FNISSPIRIIANLP 126
            + ++  D  ++ F    F+  S + + + +P
Sbjct: 88  NVALMAMDVQRLSFPDASFDKVSALYVASVVP 119


>gi|329910997|ref|ZP_08275426.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546013|gb|EGF31091.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 437

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            DG+ V++  A PG  T  LL      +I ++ D +    +++   +      ++  DA 
Sbjct: 257 RDGMRVLDACAAPGGKTGHLLERAQLDLIALDSDPRRLKRIEENLQRLQLTARLVAGDAA 316

Query: 106 KVDFEKFFNISSPIRIIANLPYNIG 130
             D+   ++     RI+A++P    
Sbjct: 317 ATDW---WDGKPFDRILADVPCTAS 338


>gi|325981486|ref|YP_004293888.1| (Uracil-5)-methyltransferase [Nitrosomonas sp. AL212]
 gi|325531005|gb|ADZ25726.1| (Uracil-5)-methyltransferase [Nitrosomonas sp. AL212]
          Length = 388

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           V+E+  G GNLTQ++       +I +E D      LK  
Sbjct: 241 VVELFCGSGNLTQIIAESNCTSIIALESDDNAIQQLKTR 279


>gi|320529084|ref|ZP_08030176.1| precorrin-6Y C5,15-methyltransferase, CbiT subunit [Selenomonas
           artemidis F0399]
 gi|320138714|gb|EFW30604.1| precorrin-6Y C5,15-methyltransferase, CbiT subunit [Selenomonas
           artemidis F0399]
          Length = 191

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 18/156 (11%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-PNRLEII 100
           +       V ++GAG G+++     +  +  V  IEK+     ++ + + +     + ++
Sbjct: 30  ARIAPDAVVYDVGAGTGSISIEAARMAPQGHVYAIEKNPDGIALIAENAKKFGAENITVV 89

Query: 101 QD---DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP-FWESLTLLFQK 156
           +    DAL  D            II      +    + + I A   P     +  +  Q 
Sbjct: 90  EGTAPDAL-ADLPAL-----DAAIIGGSGRKLA--DILDIIGARLRPQGRIVANAITMQT 141

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
                     +   Y   +V          +  + P
Sbjct: 142 VAACLDYFHAHKDDYSYEAVQVQ----INRLERVGP 173


>gi|310767091|gb|ADP12041.1| Putative cyclopropane-fatty-acyl-phospholipid synthase [Erwinia sp.
           Ejp617]
          Length = 414

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 8/69 (11%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
           +++ +         ++EIG+G G + +        +V      ++ +   +    ++   
Sbjct: 182 QRLCDRLALGRQDHLLEIGSGWGAMAEYAARQYGCRVTTTTISREQYEYCRQRIAAAGLS 241

Query: 95  NRLEIIQDD 103
           +R+ ++ +D
Sbjct: 242 DRVTVLCED 250


>gi|241762878|ref|ZP_04760941.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax
           delafieldii 2AN]
 gi|241368053|gb|EER62258.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax
           delafieldii 2AN]
          Length = 407

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           +++   S+G   G  V+EIG G G L +M       +V  +
Sbjct: 179 VRRALHSAGVQPGHRVLEIGCGWGALAEMAADEFQAQVTGV 219


>gi|207728218|ref|YP_002256612.1| cyclopropane-fatty-acyl-phospholipid synthase protein [Ralstonia
           solanacearum MolK2]
 gi|206591463|emb|CAQ57075.1| cyclopropane-fatty-acyl-phospholipid synthase protein [Ralstonia
           solanacearum MolK2]
          Length = 406

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 30  LLDLNI--LKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKV-IVIEKDQQFFPI 85
           L D  +  +  I        G T+++IG G G L  +     GAR + + + ++Q     
Sbjct: 155 LDDAQVKKIDHILTKIRLQPGQTLLDIGCGWGALVLRAAQKFGARCLGVTLSQNQFDLAR 214

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            +  ++   +R+EI   D                R +      I +  +F  +     P 
Sbjct: 215 ERIRAAGLEDRVEIRLQD---------------YRDLTGTFDRITSVGMFEHVGRKNLPG 259

Query: 146 FWESLTLLF 154
           ++  +  L 
Sbjct: 260 YFRRIHGLL 268


>gi|197117843|ref|YP_002138270.1| type 11 SAM-dependent methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|197087203|gb|ACH38474.1| SAM-dependent methyltransferase, type 11 [Geobacter bemidjiensis
           Bem]
          Length = 284

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII 100
                G+ V+++G G G  ++ L  L    VI +++   +  + + +S +    +R+  +
Sbjct: 66  LEPAPGLLVLDVGCGLGGASRYLSRLLDCHVIGVDQSSDYCHVARMLSERLGMSDRVAYL 125

Query: 101 QDDALKVDF 109
           Q DAL++ F
Sbjct: 126 QADALELPF 134


>gi|119471169|ref|ZP_01613701.1| uridylyltransferase [Alteromonadales bacterium TW-7]
 gi|119445825|gb|EAW27107.1| uridylyltransferase [Alteromonadales bacterium TW-7]
          Length = 872

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   NNKSHSLKTILS------HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG-- 55
           ++++ S+K  L         KI  KK   Q F  D NI  KI     +    ++IEI   
Sbjct: 747 SSRAQSIKRGLEQALNDPRKKIRFKKSRSQRF-KDFNIKPKIVLRPHARKDRSLIEIQAV 805

Query: 56  --AGPGNLTQ-------MLLTLGARKVIVI 76
              G   LT+        LL + A ++  +
Sbjct: 806 DIPGL--LTKIAEVFQAHLLHIHAARITTV 833


>gi|110680542|ref|YP_683549.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans
          OCh 114]
 gi|123172199|sp|Q163I0|RSMH_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
          AltName: Full=16S rRNA m(4)C1402 methyltransferase;
          AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
          RsmH
 gi|109456658|gb|ABG32863.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans
          OCh 114]
          Length = 330

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
          G G  T+ LL  GA +VI +++D   F +  D +  +  RL
Sbjct: 38 GAGGYTRGLLEAGADRVIAVDRDPLAFEMAADWAGSYGTRL 78


>gi|40062642|gb|AAR37563.1| modification methylase, HemK family [uncultured marine bacterium
           313]
          Length = 279

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 20/141 (14%)

Query: 8   HSLKTILSH----YKIIPKKYMGQNFLLDLNI----------LKKIAESSGSLDGITVIE 53
           H++K  +      Y I  K++  Q+FL++             + K+ +   +   I V++
Sbjct: 59  HAIKRRVKREPVAYIIRKKEFWSQDFLVNQATLVPRAETELLIYKVVDFFKNKR-INVLD 117

Query: 54  IGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112
           IG G G  L  +L  L   + + I+   +        +  +   L +      KV     
Sbjct: 118 IGTGSGCILLSILKELDLSRGVGIDISAKAI----KTAQTNSKNLNLFHRSKFKVFDISK 173

Query: 113 FNISSPIRIIANLPYNIGTRL 133
           FN+     I++N PY     +
Sbjct: 174 FNVGKYDLIVSNPPYIPSKDI 194


>gi|115350843|ref|YP_772682.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia ambifaria AMMD]
 gi|172059860|ref|YP_001807512.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia ambifaria MC40-6]
 gi|115280831|gb|ABI86348.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia ambifaria AMMD]
 gi|171992377|gb|ACB63296.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia ambifaria MC40-6]
          Length = 218

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISS 91
             +  ++ +         V+ IGAG G L   L       V  +E D        D + +
Sbjct: 64  PRVEARMLQELAVKKHENVLVIGAGSGYL-AALFAHRTLHVTAVEIDPAIAKFAADNLRN 122

Query: 92  QHPNRLEIIQDD 103
                 E++  D
Sbjct: 123 DGVTNAEVVLGD 134


>gi|317124058|ref|YP_004098170.1| trans-aconitate 2-methyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315588146|gb|ADU47443.1| Trans-aconitate 2-methyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 283

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH 93
           ++ +I  ++       V++IG GPG+LT  L       +V+ ++   +     +      
Sbjct: 38  LVARIRTAAP----QRVVDIGCGPGDLTLGLARRWPDARVVGVDSSPEMLAEARTR--DR 91

Query: 94  PNRLEIIQ 101
             R++ ++
Sbjct: 92  DGRVQWVE 99


>gi|313496642|gb|ADR58008.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 401

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 37/123 (30%), Gaps = 13/123 (10%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116
           G G+L + LL  G + +  +E D       + +S+ H  + + +  D +  D  +     
Sbjct: 134 GKGHLGRRLLQPG-QHLTCLEYDADLVAAGQALSAHHHLQAQHVHQDVMASDSARHLADD 192

Query: 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSV 176
             +  +          L    +   +            Q  +      +  +  Y  LS 
Sbjct: 193 KSVVALHAC-----GDLHVRLLQLASQQ-------GCRQLAIAPCCYNRIAAQQYQALST 240

Query: 177 LTG 179
              
Sbjct: 241 AAQ 243


>gi|304437371|ref|ZP_07397330.1| ribosomal protein L11 methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369627|gb|EFM23293.1| ribosomal protein L11 methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 317

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
              G+ V ++G G G L      LGA +VI ++ D     + ++ I   H   +  +Q D
Sbjct: 171 VCPGMRVYDVGCGSGILAIAASKLGAGEVIAMDYDPVAVSVAEENIKQNHVTNVVALQSD 230

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
            L V         +P  +I     NI   ++      
Sbjct: 231 LLAVCCGM-----APAELITA---NIIADIIIRLFDQ 259


>gi|294010889|ref|YP_003544349.1| cyclopropane-fatty-acyl-phospholipid synthase [Sphingobium
           japonicum UT26S]
 gi|292674219|dbj|BAI95737.1| cyclopropane-fatty-acyl-phospholipid synthase [Sphingobium
           japonicum UT26S]
          Length = 413

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           IA       G+ V++IG G G +   L       V  I   ++   + +  +        
Sbjct: 173 IAAKLHLKPGMKVLDIGCGWGGMALYLHRTCGVDVTGITLSEEQLKVARQRAQDAG---- 228

Query: 99  IIQDDALKVDFEKFFNISSPIRII 122
               D ++ +   + +I  P   I
Sbjct: 229 --VADHVRFELIDYRDIDGPFDRI 250


>gi|291533315|emb|CBL06428.1| spermidine synthase [Megamonas hypermegale ART12/1]
          Length = 286

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQH-----PN 95
           +        +I IG G G   + LL       V ++E D++   I +    Q        
Sbjct: 71  AVHPNPKRVLI-IGGGDGGTARELLRYKNVESVDLVEIDERVVDISRKYLPQTACSFDDE 129

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQ 155
           RL    +D LK       N    I + +  P+  G  L       + +    E   ++ Q
Sbjct: 130 RLHCYFEDGLKF-IRHCDNEYDLIIVDSTDPFGPGEGLFTKEFYGNCYKALKEDGIMVNQ 188

Query: 156 KE 157
            E
Sbjct: 189 HE 190


>gi|241173440|ref|XP_002410852.1| acid methyltransferase, putative [Ixodes scapularis]
 gi|215495022|gb|EEC04663.1| acid methyltransferase, putative [Ixodes scapularis]
          Length = 157

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 16/153 (10%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLL---TLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            + D + ++++G GPG++T+  L    L  R+V+ ++         K   +      +++
Sbjct: 8   DAKDDLQILDLGCGPGDITRDGLLPRCLPCRRVVAVDVSADMVEFAKTHYAHAKISYDVL 67

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE-VG 159
             D +  D   F         +        +   FNW+             +    E + 
Sbjct: 68  --DIVADDVADFVERYGRFDRV-------YSSYCFNWVKDQEQAFKNLGELMKPGAECLL 118

Query: 160 ERITAQKNSPHYGRLSVLTGW--RTKATMMFDI 190
               A  +     +L+ +  W    +    F++
Sbjct: 119 RFYAASPHMRFRQKLAKMERWKKYAQVRS-FEV 150


>gi|157813762|gb|ABV81626.1| putative protein arginine N-methyltransferase 1 [Antheraea
           paukstadtorum]
          Length = 244

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLSDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|148555616|ref|YP_001263198.1| putative methyltransferase [Sphingomonas wittichii RW1]
 gi|148500806|gb|ABQ69060.1| putative methyltransferase [Sphingomonas wittichii RW1]
          Length = 173

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A   GS +G+ V ++ AG G L    L+ GA +   +E+D+     L+   ++     E+
Sbjct: 37  ASRIGSFEGLAVADVCAGTGALGLEALSRGAARCTFVERDRAAVEALRANIAKLGAEAEV 96

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
                 +    + F   +   ++ + PY  GT L    + A    P   +     + E  
Sbjct: 97  ------RAIAAESFAGGAYDLVLIDPPY--GTGLGQKVLPAIGLAPGGWASIETARDEAV 148


>gi|85716437|ref|ZP_01047409.1| UbiE/COQ5 methyltransferase [Nitrobacter sp. Nb-311A]
 gi|85696794|gb|EAQ34680.1| UbiE/COQ5 methyltransferase [Nitrobacter sp. Nb-311A]
          Length = 285

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLE 98
           + +  + G  +I++G G G  T+           V+  D    P+L+      P   R+E
Sbjct: 44  DRARVMPGERIIDVGCGCGATTRAFAEQAGPSGYVLGID-VSAPMLERAGQVAPQTGRVE 102

Query: 99  IIQDDALKVDFEK 111
               DA +  F  
Sbjct: 103 FRLADAAEYQFRP 115


>gi|297526095|ref|YP_003668119.1| protein-L-isoaspartate O-methyltransferase [Staphylothermus
           hellenicus DSM 12710]
 gi|297255011|gb|ADI31220.1| protein-L-isoaspartate O-methyltransferase [Staphylothermus
           hellenicus DSM 12710]
          Length = 225

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-------KVIVIEKDQQFFPILKDISSQ- 92
           E      G  V+E+G G G    +L  + A+        V  IE+  +   + K    + 
Sbjct: 73  EELDPEPGNIVLEVGTGSGYQAAVLAEIVAKQDSSRRGHVYTIERIPELAELAKKNLERT 132

Query: 93  -HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +   + +I  D  K   EK       I + A  P
Sbjct: 133 GYIEYVTVIVGDGTKGYPEKA--PYDRIIVTAAAP 165


>gi|260599108|ref|YP_003211679.1| protein-L-isoaspartate O-methyltransferase [Cronobacter turicensis
           z3032]
 gi|260218285|emb|CBA33246.1| Protein-L-isoaspartate O-methyltransferase [Cronobacter turicensis
           z3032]
          Length = 208

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLTLTPASRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKSLQWHARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T LL   
Sbjct: 116 RLKQLDLHNISTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALLSQL 162


>gi|294887529|ref|XP_002772151.1| protein arginine n-methyltransferase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239876097|gb|EER03967.1| protein arginine n-methyltransferase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 1356

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 30  LLD--LNILKK--IAESSGSLDG--ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           L D   N+  K  IAE+    +G    VI++G G G L+  L     +   +   D  + 
Sbjct: 595 LNDGARNVAYKKAIAEAMRDREGQIDRVIDVGCGTGILSYYLAECAPKGTEITACDCSWA 654

Query: 84  PILKDISSQHPN-RLEIIQDD 103
             L +++ +    R+++IQ D
Sbjct: 655 --LCEVAGRACGPRVKVIQAD 673


>gi|284037496|ref|YP_003387426.1| methyltransferase type 11 [Spirosoma linguale DSM 74]
 gi|283816789|gb|ADB38627.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
          Length = 259

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
                  G  ++++G G G LT  +   GA+   +I  D     I K   S     L   
Sbjct: 29  NLLDPQPGERILDLGCGTGELTARIAESGAK---IIGLDASLSMISKARESF--PHLSFQ 83

Query: 101 QDDALKVDFEKFFN 114
           + DA     ++ F+
Sbjct: 84  EGDARNFGTDQPFD 97


>gi|184201647|ref|YP_001855854.1| hypothetical protein KRH_20010 [Kocuria rhizophila DC2201]
 gi|183581877|dbj|BAG30348.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 444

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIE-KDQQFFPILKDISSQHPNRLEIIQDDALKV 107
             V++IG   G LT  L    A  V  ++  D         ++ +    +E++    L  
Sbjct: 291 DRVLDIGCSTGALTAELARR-AGTVTAVDASDVALRAARARLAEEDLANVELVHA-VLPA 348

Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           D+ + +     + +++ + Y          +  
Sbjct: 349 DWREDWT-GRDLVVVSEMGYFCSPAQWHELLGR 380


>gi|156932759|ref|YP_001436675.1| protein-L-isoaspartate O-methyltransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|166220558|sp|A7MJ61|PIMT_ENTS8 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|156531013|gb|ABU75839.1| hypothetical protein ESA_00548 [Cronobacter sakazakii ATCC BAA-894]
          Length = 208

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLTLTPASRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKSLQWHARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +   +P    I+   P  I T LL   
Sbjct: 116 RLKQLDLHNISTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALLSQL 162


>gi|126650294|ref|ZP_01722522.1| SAM-dependent methyltransferase [Bacillus sp. B14905]
 gi|126592944|gb|EAZ86926.1| SAM-dependent methyltransferase [Bacillus sp. B14905]
          Length = 225

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           +IL KI      +   TV++IG G G LT  L   G +
Sbjct: 44 KDILNKIFNEVMQVPASTVLDIGFGTGVLTAKLYEHGHK 82


>gi|146305492|ref|YP_001185957.1| ArsR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145573693|gb|ABP83225.1| transcriptional regulator, ArsR family [Pseudomonas mendocina ymp]
          Length = 334

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDAL 105
              + +EIG G G     L     R V  ++       +  +  +++    +E+   DAL
Sbjct: 160 PDASALEIGPGDGAFLPELARRFTR-VTALDNSPAMLELASQRCAAEGLANVELKLADAL 218

Query: 106 KVDFEK 111
           + +   
Sbjct: 219 QDEQPP 224


>gi|145592670|ref|YP_001156967.1| Eco57I restriction endonuclease [Salinispora tropica CNB-440]
 gi|145302007|gb|ABP52589.1| Eco57I restriction endonuclease [Salinispora tropica CNB-440]
          Length = 499

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 15/93 (16%)

Query: 50  TVIEIGAGPGNLTQMLLTLG-------ARKVIVIEKDQQFFPILKDI----SSQHPNRL- 97
            V++ GAG G L+  L+          A  V+ +E+D+   P L+D     ++    R+ 
Sbjct: 54  RVLDPGAGSGMLSAALVARVLNDRSNLAVHVVAVERDETLLPQLRDTLDACATAGSGRVT 113

Query: 98  -EIIQDDALKVDFEKFFNI--SSPIRIIANLPY 127
            E++ DD +        +        +I N PY
Sbjct: 114 YELVTDDFITASTGTRPDERLGGFDLVIQNPPY 146


>gi|110833689|ref|YP_692548.1| hypothetical protein ABO_0828 [Alcanivorax borkumensis SK2]
 gi|110646800|emb|CAL16276.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 338

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +  LDG  V+E+G G G+LT  +      +R   +     Q   IL   + +  + +++I
Sbjct: 105 ADLLDGQDVLEMGCGWGSLTLWMAKQYPNSRITAISNSSSQRAFILGRAAERGLDNVDVI 164

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRL-LFNWIS--ADTWPPFW--ESLTLLFQ 155
             DA +    K ++    + +  ++  +    L + +W+      +   +    LT LF+
Sbjct: 165 TVDASQYQPSKPYDRVVSVEMFEHMRNHKTLMLRIHDWLKPGGKLFIHVFCHHDLTYLFE 224

Query: 156 KEVGERITAQ 165
            E  +   A+
Sbjct: 225 TEGSKDWMAK 234


>gi|99081590|ref|YP_613744.1| methyltransferase type 12 [Ruegeria sp. TM1040]
 gi|99037870|gb|ABF64482.1| Methyltransferase type 12 [Ruegeria sp. TM1040]
          Length = 215

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
                V+EIG G G+ T +LL      +   +       I  +  ++
Sbjct: 40 LKPEDHVLEIGCGTGS-TALLLAPHVAHITGTDLAPGMIEIAAEKRAK 86


>gi|89900458|ref|YP_522929.1| hypothetical protein Rfer_1668 [Rhodoferax ferrireducens T118]
 gi|89345195|gb|ABD69398.1| conserved hypothetical protein 95 [Rhodoferax ferrireducens T118]
          Length = 220

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFN 114
           AG G L     + GA++V+++E+D      LK +  Q   +  +I++ D L     K  +
Sbjct: 87  AGTGALGFEAASRGAKEVLLVEQDTALVAQLKRVQIQLQASTTQIVRGDGLAA--LKHLD 144

Query: 115 ISSPIRIIANLPYN 128
            +S   +  + P++
Sbjct: 145 PASMDAVFLDPPFD 158


>gi|51892979|ref|YP_075670.1| putative rRNA methylase [Symbiobacterium thermophilum IAM 14863]
 gi|51856668|dbj|BAD40826.1| putative rRNA methylase [Symbiobacterium thermophilum IAM 14863]
          Length = 257

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 11/121 (9%)

Query: 41  ESSGSLDGITV-IEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLE 98
           +  G      V +++GA  G  T  LL  GAR+V  ++  +    P L+        R+ 
Sbjct: 73  DQFGIDPAGRVCLDVGASTGGFTDCLLRRGARRVYAVDVGRDQLHPSLRQ-----DPRVV 127

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +++    + D      +  P+ + A     I   L+   ++    P       +  Q EV
Sbjct: 128 VME----ETDIRSVAALPEPVELAAVDVSFISLTLVLPAVARLLAPAGQIVALIKPQFEV 183

Query: 159 G 159
           G
Sbjct: 184 G 184


>gi|329944890|ref|ZP_08292917.1| methyltransferase domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328529701|gb|EGF56597.1| methyltransferase domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 250

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 36  LKKIAESSGSLDGIT-----VIEIGAGPGNLTQMLLTLGARKVIV-IEKD--QQFFPILK 87
           +  I +    L   T     V+E+  G G +T  +   G R +   +  D        L 
Sbjct: 32  IASILDFLEILPDQTLAGLRVLELACGSGRVTVPMAAAGHRVLATDLSIDVLSLLAERLT 91

Query: 88  DISS---QHPNRLEIIQDDALKVDFEKFFN 114
           +  +       R+EI Q D +  D ++ F 
Sbjct: 92  ERQAIQSGIAGRVEIQQADMVSFDIKESFK 121


>gi|325846465|ref|ZP_08169380.1| O-methyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481223|gb|EGC84264.1| O-methyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 211

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           FL +L  ++K            ++EIG+  G  + +        +  IEK ++   I K 
Sbjct: 43  FLKNLLTIQK---------PKNILEIGSAIGYSSLLFSKYTGANITTIEKSEKMCEIAKS 93

Query: 89  ISSQHPNRLEIIQDDALK 106
              ++   + II  DA K
Sbjct: 94  NFKKYGKDINIINMDAKK 111


>gi|325295280|ref|YP_004281794.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065728|gb|ADY73735.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 263

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 13/111 (11%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFF----PILKDISSQ 92
           IA       G  V+E G G G +T +   +   + KV+  E+ ++F       L+ +   
Sbjct: 91  IALRLNVKPGDLVVESGIGSGAMTAVFAHIVGDSGKVVSYERREEFIKNALSNLRKLGLD 150

Query: 93  HPNRLEIIQDDALK-VDFEK----FFNISSPIRIIANLPYNIGTRLLFNWI 138
           H  R+++   D  +  D  +    F ++  P   I      + T  +   +
Sbjct: 151 H--RVKVKHRDIAEGFDETEADAVFLDVREPWLYIDKAYKALKTGNMLGIL 199


>gi|321442027|gb|ADW85428.1| arg methyltransferase [Tineola bisselliella]
          Length = 244

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA +VI +E         + I  ++Q  N + +++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGAARVIAVEC-SNIIDYAQKIVEANQLDNIITLVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|315937093|gb|ADU56101.1| hypothetical protein CA878-23 [uncultured organism CA878]
          Length = 277

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
            ++ +I        G   +++G G G  ++     G   V+ +E D +     +
Sbjct: 38 EALVDRIIA---LSPGKNFVDVGCGTGISSRPFQAAGC-TVLGVEPDARMADFAR 88


>gi|319790660|ref|YP_004152293.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1]
 gi|317115162|gb|ADU97652.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1]
          Length = 295

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 57  GPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G  T+ +L      +VI I++D++      +    + +R+ I   +  ++D
Sbjct: 32  GGGGHTEAILKAHPENRVIAIDRDEEAIERAMERLKPYGDRVSIYHANFSQID 84


>gi|317504417|ref|ZP_07962398.1| SAM-dependent methyltransferase [Prevotella salivae DSM 15606]
 gi|315664463|gb|EFV04149.1| SAM-dependent methyltransferase [Prevotella salivae DSM 15606]
          Length = 289

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + + +  +        V+E   G G   ++ L+        +E + +    ++D    
Sbjct: 59  KALTQAMLNAMNITPDDDVVEFAPGLGYTAKLALSRHPHSYTAVELNAEAAQRVRDNVQ- 117

Query: 93  HPNRLEIIQDDA 104
             + + I+  +A
Sbjct: 118 -DDTINIVIGNA 128


>gi|315172489|gb|EFU16506.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX1346]
          Length = 277

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|312862357|ref|ZP_07722600.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
 gi|322515928|ref|ZP_08068869.1| adenine-specific methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|311102000|gb|EFQ60200.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
 gi|322125602|gb|EFX96932.1| adenine-specific methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 318

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 44  GSLDGIT--VIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEI 99
           G        V+EIG+G GNL + LL    + +  + +E D     +   I+    +    
Sbjct: 104 GLTKDDQLDVLEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSSAVY 163

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYN-IGTRL 133
           IQ+DA++    K  ++      +   P + I +R 
Sbjct: 164 IQEDAVRPHILKESDVIISDLPVGYYPNDEIASRF 198


>gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 426

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 10/145 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEI 99
           +   + DG  +++  A PG  T  +L      KV+ I+ D      + D   +      +
Sbjct: 237 DFLNAQDGELILDCCAAPGGKTAHILERAPNCKVVAIDCDDTRLQRVHDNLQRLQLNATV 296

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL--FQKE 157
           I  DA   + E+++      RI+ + P +    +  +      W    E +  L   Q E
Sbjct: 297 ICGDA--RNPEEWWQGEKFDRILLDAPCSATGVIRRH--PDIKWLRRAEDIHALAQLQSE 352

Query: 158 VGERI---TAQKNSPHYGRLSVLTG 179
           + + +        +  Y   S+   
Sbjct: 353 ILDAMWQQLKPGGTLVYATCSITPQ 377


>gi|294011742|ref|YP_003545202.1| cyclopropane-fatty-acyl-phospholipid synthase [Sphingobium
           japonicum UT26S]
 gi|292675072|dbj|BAI96590.1| cyclopropane-fatty-acyl-phospholipid synthase [Sphingobium
           japonicum UT26S]
          Length = 421

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +  I +     +G +++EIG G G L +  +     +   +    +     +D      N
Sbjct: 197 VDAILDRLDLGEGDSLLEIGCGWGGLAEQAMARCPIRYDGLTLSVEQAHYARDRLGSGAN 256

Query: 96  RLEIIQDD 103
              II  D
Sbjct: 257 ---IILQD 261


>gi|291520682|emb|CBK75903.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Butyrivibrio fibrisolvens 16/4]
          Length = 263

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILK 87
           +   I++ I+      DG   +++G G G LT             +  D+   ++    K
Sbjct: 79  MSKQIIEGISAYVNVPDGGKCLDVGCGSGALTIA-CAKKNPNAEFVGIDRWGKEYASFSK 137

Query: 88  DISSQHP-----NRLEIIQDDALKVDF-EKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           ++   +      + +   Q DA K+ F ++ F+  +   +  N+P      +L   + 
Sbjct: 138 NLCENNAKAEGVSNVSFGQGDATKLSFVDETFDAVTSNYVYHNIPSKDRQAILLETLR 195


>gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           MB-451]
 gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           MB-451]
          Length = 426

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 14/145 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
                G  +++  A PG  T  +L      +V+ I+ D+     +++   +     ++I 
Sbjct: 239 LAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNAQVIC 298

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLFQKE 157
            DA     + ++      RI+ + P +    +       W+      P    L    Q+E
Sbjct: 299 GDA--RYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAEL----QRE 352

Query: 158 VGERI---TAQKNSPHYGRLSVLTG 179
           + + +        +  Y   S+   
Sbjct: 353 ILDAMWQQLKPGGTLVYATCSITPQ 377


>gi|256784559|ref|ZP_05522990.1| Methyltransferase type 11 [Streptomyces lividans TK24]
          Length = 283

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 50  TVIEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPN-RLEIIQDDALKV 107
            V++IG G G  + ++   L  R+V+ ++         ++ +   P+  +E ++ D    
Sbjct: 60  VVLDIGCGRGTSSLVIAEQLRPRRVVGLDAAPSLLAQARERAKDLPDSTVEFVEGDF--- 116

Query: 108 DFEKFFNISSPIRIIANLPYN 128
                 + SS + + A   Y+
Sbjct: 117 HDLPLPDGSSDVVVAAFCLYH 137


>gi|256544972|ref|ZP_05472341.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus vaginalis
           ATCC 51170]
 gi|256399339|gb|EEU12947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus vaginalis
           ATCC 51170]
          Length = 455

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 4/124 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I +K  E +       V+++ +G G +TQ L    A K + IE  ++      D + +
Sbjct: 297 EKIYQKAIELANVDKNKNVLDLYSGTGTITQ-LFAKSANKAMGIEIIEEAVEKAFDNAKE 355

Query: 93  HP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
           +    +  I  D L+            I +I      I  + +   I        + S  
Sbjct: 356 NEIENINFIAGDVLE--KIDLVKGKYDIVVIDPPREGIHPKAIKKIIDISPEEFVYISCN 413

Query: 152 LLFQ 155
              Q
Sbjct: 414 PKTQ 417


>gi|238854674|ref|ZP_04645004.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           269-3]
 gi|260664383|ref|ZP_05865235.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282932935|ref|ZP_06338332.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           208-1]
 gi|238832464|gb|EEQ24771.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           269-3]
 gi|260561448|gb|EEX27420.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302970|gb|EFA95175.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           208-1]
          Length = 314

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 16/129 (12%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDD 103
               + V+++G G G L      LGA+ V+  +  D+      ++I+    N +E+I+ +
Sbjct: 174 LTKPVKVLDVGTGSGILAIAASKLGAKSVLATDISDEAVTAANENIALNKLNNIEVIKAN 233

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI-----SADTWPPFWESLTLLFQKEV 158
            LK       ++     +I     NI   +LF+ I               S     Q E 
Sbjct: 234 LLK-------DVDGKFDLILA---NILAEILFDLIPDLDKHLAPNGKVIFSGIDYLQAEK 283

Query: 159 GERITAQKN 167
            ++  A   
Sbjct: 284 VKQRLADNG 292


>gi|254477700|ref|ZP_05091086.1| protein-L-isoaspartate O-methyltransferase [Ruegeria sp. R11]
 gi|214031943|gb|EEB72778.1| protein-L-isoaspartate O-methyltransferase [Ruegeria sp. R11]
          Length = 215

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + ++       TV+E+G G G     +L+  AR+V  +++  +     + +  Q
Sbjct: 64  PSVVGLMTQALQISPRDTVLEVGTGSGY-QAAILSKLARRVYTVDRHARLVREARQVFEQ 122

Query: 93  -HPNRLEIIQDD 103
            H   +  +  D
Sbjct: 123 LHLANITSLVGD 134


>gi|194908069|ref|XP_001981698.1| GG11463 [Drosophila erecta]
 gi|190656336|gb|EDV53568.1| GG11463 [Drosophila erecta]
          Length = 317

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQH 93
           +  I        G  V+E G G G+L+   L        +   D  +      +D   +H
Sbjct: 100 ISMIIHQLEVRPGAVVVESGTGSGSLSHYFLRALKPTGHLHTFDFHEARADQARDEFRRH 159

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-----TWPPF 146
              + + +   D   + F    +  +    +     ++     F  +        ++ P 
Sbjct: 160 GIADFVTVYHRDVCNLGFGAELDGKADAVFLDLPAPDLAVPHAFKALKLSGGRFCSFSPC 219

Query: 147 WESLTLLFQK 156
            E      Q+
Sbjct: 220 IEQSQRCIQE 229


>gi|152970551|ref|YP_001335660.1| cyclopropane fatty acyl phospholipid synthase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150955400|gb|ABR77430.1| cyclopropane fatty acyl phospholipid synthase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 332

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           L  I        G+ V++IG G G L + +       V+ +  
Sbjct: 106 LDLICRKLELEPGMRVLDIGCGWGGLAEYMARNYQVSVVGVTI 148


>gi|68249563|ref|YP_248675.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|81336008|sp|Q4QLT2|PRMA_HAEI8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|68057762|gb|AAX88015.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
           86-028NP]
          Length = 295

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQD 102
            L   TVI+ G G G L    L LGA+  + I+ D Q     +D + Q+   +RL++   
Sbjct: 156 DLKNKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRDNAEQNGVVDRLQLFLS 215

Query: 103 D 103
           D
Sbjct: 216 D 216


>gi|86133381|ref|ZP_01051963.1| protein-L-isoaspartate O-methyltransferase [Polaribacter sp.
           MED152]
 gi|85820244|gb|EAQ41391.1| protein-L-isoaspartate O-methyltransferase [Polaribacter sp.
           MED152]
          Length = 213

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ---HPNRL 97
           ++        ++EIG G G  T +LL   A +V  IE+  + F        +    P R 
Sbjct: 74  QTLEIKPTDKILEIGTGSGYQTAVLLEFKA-EVYTIERQHELFKRTSSFLPKINYKPKRF 132

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPY 127
             I  D  K   E+       I + A  P+
Sbjct: 133 --IFGDGYKGLQEQA--PFDKIIVTAGAPF 158


>gi|159108355|ref|XP_001704449.1| tRNA methyltransferase subunit, putative [Giardia lamblia ATCC
           50803]
 gi|157432512|gb|EDO76775.1| tRNA methyltransferase subunit, putative [Giardia lamblia ATCC
           50803]
          Length = 350

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQ-QFFPI 85
           F+ D++I   I   S    G  V E G G G+LT  LL       ++   + D+ +    
Sbjct: 117 FIPDISI---ILTRSNIQPGSRVCEAGIGSGSLTHHLLHRIYPGGRLFCCDIDESRARLA 173

Query: 86  LKDISSQHPN 95
            +D+ + + +
Sbjct: 174 HEDLLAHYSS 183


>gi|322390788|ref|ZP_08064298.1| ribosomal protein L11 methyltransferase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142458|gb|EFX37926.1| ribosomal protein L11 methyltransferase [Streptococcus
           parasanguinis ATCC 903]
          Length = 317

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LG++++   + D     + ++    +P    + +   
Sbjct: 169 LRGGETVLDVGTGSGVLSIASSLLGSKEIFAYDLDDVAVRVAQENIELNPGMENIHVAPG 228

Query: 103 DALK 106
           D LK
Sbjct: 229 DLLK 232


>gi|262831379|sp|A8AD10|TRMN6_CITK8 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
          Length = 245

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKDISSQH--PNRLE 98
           +       +++IG G G L  ML       V    +E D +     ++  +    P R+ 
Sbjct: 40  APVAGVTRILDIGTGSGLLALMLAQRTDESVTIDAVELDSEAATQAQENIAHSPWPQRIT 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  +D  +    +         II+N PY 
Sbjct: 100 VHTEDVRQWVPRQTARFD---LIISNPPYY 126


>gi|254491607|ref|ZP_05104786.1| Protein-L-isoaspartate O-methyltransferase superfamily
           [Methylophaga thiooxidans DMS010]
 gi|224463085|gb|EEF79355.1| Protein-L-isoaspartate O-methyltransferase superfamily
           [Methylophaga thiooxydans DMS010]
          Length = 208

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN-- 95
           +  ++       TV+E+G G G  T  LL   A +V+ +E    FF  L +++SQ  +  
Sbjct: 59  RFLQALNLQSHETVMELGTGSGYFT-ALLAQLAGRVVSVE----FFAELSELASQRLDQQ 113

Query: 96  ---RLEIIQDDALKVD 108
               + +   DA K  
Sbjct: 114 GIENVSLQVGDASKSW 129


>gi|166365738|ref|YP_001658011.1| Type II site-specific deoxyribonuclease [Microcystis aeruginosa
           NIES-843]
 gi|166088111|dbj|BAG02819.1| Type II site-specific deoxyribonuclease [Microcystis aeruginosa
           NIES-843]
          Length = 820

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 15  SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTL---GA 70
           S   +  +  +GQ FL    + + +A    +L G   +++ GAG G LT  ++       
Sbjct: 18  SRLNLKQRSQLGQ-FLTPATVARFMAGQFNNLSGHIHLLDAGAGIGTLTAAVVERLLANP 76

Query: 71  RKV-----IVIEKDQQFFPILKDISSQ 92
            +V        E +  FFP L    ++
Sbjct: 77  DQVSSCSITAYEVEPVFFPSLNQTLTE 103


>gi|157144490|ref|YP_001451809.1| hypothetical protein CKO_00207 [Citrobacter koseri ATCC BAA-895]
 gi|157081695|gb|ABV11373.1| hypothetical protein CKO_00207 [Citrobacter koseri ATCC BAA-895]
          Length = 219

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKDISSQH--PNRLE 98
           +       +++IG G G L  ML       V    +E D +     ++  +    P R+ 
Sbjct: 14  APVAGVTRILDIGTGSGLLALMLAQRTDESVTIDAVELDSEAATQAQENIAHSPWPQRIT 73

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  +D  +    +         II+N PY 
Sbjct: 74  VHTEDVRQWVPRQTARFD---LIISNPPYY 100


>gi|156389096|ref|XP_001634828.1| predicted protein [Nematostella vectensis]
 gi|156221915|gb|EDO42765.1| predicted protein [Nematostella vectensis]
          Length = 265

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
             K+  E      G  V+++G G G     ++     +V  ++       I K  +++  
Sbjct: 42  TTKEFVEMLNLAPGQKVLDVGCGIGGSAFYMIKNFHVEVRAVDLSTNMIEIGKQRAAEFE 101

Query: 95  -NRLEIIQDDA 104
            ++++   +D 
Sbjct: 102 IDKVDFEVEDI 112


>gi|114566890|ref|YP_754044.1| hypothetical protein Swol_1366 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337825|gb|ABI68673.1| hypothetical protein Swol_1366 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 220

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVD 108
           ++EIG G G + + LL  GA  V+ ++   +   +  +  +       L ++  + +   
Sbjct: 1   MLEIGCGTGRVLKPLLESGA-SVVGVDISHEMLALAHNKLASFCDSGALRLLNHNFVYSS 59

Query: 109 FEKFFN 114
             + F+
Sbjct: 60  IPERFD 65


>gi|9622223|gb|AAF89680.1| adenine-specific methyltransferase [Bacillus sp. LU11]
          Length = 568

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 75/250 (30%), Gaps = 46/250 (18%)

Query: 25  MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-----ARKVIVIEKD 79
           +GQ F     +   +     +    T++E   G G   + +           K+I +E D
Sbjct: 22  LGQVF-TPQGVANLMVSFGLNTKPRTILEPCFGEGVFLESIQKRKEYVANDTKIIGVEID 80

Query: 80  QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI-----IANLPYNIGTRLL 134
              +  ++   S+ PN LE+   D           I +P  I        +P  +    +
Sbjct: 81  PVLYERVR---SKFPN-LELYNMDFFDFKGVVDCVIMNPPYIRQELLREKMPRFLNKSDI 136

Query: 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNS-----------PHYGRL---SVLTGW 180
              +    +P    S   ++       I ++K S             YG      +L  +
Sbjct: 137 ITRLPLLQYPISSRSNLYVYFIIKAWSILSEKGSIIAIIPNTWMAAEYGNSFKKFLLQNF 196

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
             KA + F+      FP   V S +++     +                F  R   L   
Sbjct: 197 WIKAIIQFN---KDVFPDADVESCILYLSKEKDSE--------------FNMRNTYLINI 239

Query: 241 LKRLGGENLL 250
            K    +  L
Sbjct: 240 QKPFSKDEFL 249


>gi|85374177|ref|YP_458239.1| hypothetical protein ELI_06750 [Erythrobacter litoralis HTCC2594]
 gi|84787260|gb|ABC63442.1| hypothetical protein ELI_06750 [Erythrobacter litoralis HTCC2594]
          Length = 251

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ 92
            +K+ + +    G+TV +IGAG G  T  L T    + +V+  + D      L     +
Sbjct: 63  ARKVMDFAAIEPGMTVADIGAGEGYYTVRLATRVGESGRVLAQDIDPDALQRLGTRVER 121


>gi|254246106|ref|ZP_04939427.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124870882|gb|EAY62598.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 258

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 43/145 (29%), Gaps = 17/145 (11%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        ++EIG G G  T  +         + +E  +     +LK I  Q  + + 
Sbjct: 77  DAIFGRSAPRILEIGFGMGASTAEIAAHRPGDDFLGVEVHEPGVGALLKLIGEQGLSNIR 136

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           IIQ DA++V                       +    +    D W         L Q  +
Sbjct: 137 IIQHDAVEVLEHMIAP---------------ASLDGVHIFFPDPWHKARHHKRRLIQPPL 181

Query: 159 GERITAQKNSPHYGRLSVLTGWRTK 183
              + ++     Y   +       +
Sbjct: 182 VAHLASRLKPGAYLHCATDWQNYAE 206


>gi|326486442|gb|ADZ76270.1| hypothetical protein HS15.06 [Campylobacter jejuni subsp. jejuni]
          Length = 257

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 32 DLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
             +L+K+             + ++E+GAG G LT+ML  +   ++  +E +       +
Sbjct: 20 SPFLLEKLVACINDKNKNFKDLNIVEVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQ 79

Query: 88 DISSQHPN 95
            +    N
Sbjct: 80 KFTQNLSN 87


>gi|326486378|gb|ADZ76209.1| hypothetical protein HS4.06 [Campylobacter jejuni subsp. jejuni]
          Length = 257

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 32 DLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
             +L+K+             + ++E+GAG G LT+ML  +   ++  +E +       +
Sbjct: 20 SPFLLEKLVACINDKNKNFKDLNIVEVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQ 79

Query: 88 DISSQHPN 95
            +    N
Sbjct: 80 KFTQNLSN 87


>gi|325299919|ref|YP_004259836.1| biotin biosynthesis protein BioC [Bacteroides salanitronis DSM
           18170]
 gi|324319472|gb|ADY37363.1| biotin biosynthesis protein BioC [Bacteroides salanitronis DSM
           18170]
          Length = 250

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 11  KTILSHY-----KIIPKKYMGQNFLLD--LNILKKIAESSGSLDGITVIEIGAGPGNLTQ 63
           K ++ H         P++   Q    D  L +   I           V+EIG G G  T+
Sbjct: 3   KALIRHRFAKASGSYPRQAFVQ---RDIALRMADLIGRYVSPDSHRRVLEIGCGTGLFTR 59

Query: 64  MLLTLGARKVIVIEKDQQFFPILKDISSQ-HPNRLEIIQDDALKVDFE 110
             L     + +V+       P ++   +     ++  +  DA  +DF 
Sbjct: 60  AYLHRWCPERLVLN---DLCPEVEPYFADLLGGQVSFVAKDAEALDFP 104


>gi|319740477|gb|ADV60532.1| arg methyltransferase [Paonias myops]
          Length = 244

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G  V++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKVVLDIGCGTGILSMFAAKAGATKVIAVEC-SNIVDYARKIVEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|311898377|dbj|BAJ30785.1| putative protein methyltransferase HemK [Kitasatospora setae
           KM-6054]
          Length = 288

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISSQHPN--R 96
             +        V+++  G G +   L     R  V   E D+      +      P+  R
Sbjct: 105 VRAMDV-AEPLVVDLCTGSGAIALALAQELPRSTVHAFELDEGALAYTRRNVEASPDRAR 163

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + + Q DA +   +          +I+N PY
Sbjct: 164 VHLHQGDATQAFADDRGWDGRFDLVISNPPY 194


>gi|299140732|ref|ZP_07033870.1| ribosomal protein L11 methyltransferase [Prevotella oris C735]
 gi|298577698|gb|EFI49566.1| ribosomal protein L11 methyltransferase [Prevotella oris C735]
          Length = 287

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 35  ILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISS 91
             + IA +     L    +++ G G G L  +    GA+ V+  + D+      + +I+ 
Sbjct: 136 TTRMIASTLLHLDLKDKRILDCGCGTGILGIIAAKYGAKAVVGYDIDEWSVENSQHNIAI 195

Query: 92  QHPNRLEIIQDDA 104
            +   +EI   DA
Sbjct: 196 NNVENIEIYHGDA 208


>gi|297570880|ref|YP_003696654.1| TrkA-N domain protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931227|gb|ADH92035.1| TrkA-N domain protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 222

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 39  IAESSGSLDGITVIEIGAG-PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
           +A  +       V+ IG G  G+   + L    R V+ +E D            Q  +R 
Sbjct: 1   MARVANESP-DAVLVIGLGRFGSAIAVTLDKLGRDVLAVESDPDLA-------QQWSHRF 52

Query: 98  EIIQDDA 104
            +++ DA
Sbjct: 53  RVVEADA 59


>gi|161334723|gb|ABX61058.1| truncated hypothetical protein [Campylobacter jejuni]
 gi|315930275|gb|EFV09382.1| Methyltransferase [Campylobacter jejuni subsp. jejuni 305]
          Length = 151

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 32 DLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
             +L+K+             + ++E+GAG G LT+ML  +   ++  +E +       +
Sbjct: 20 SPFLLEKLVACINDKNKNLKDLNIVEVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQ 79

Query: 88 DISSQHPN 95
            +    N
Sbjct: 80 KFTQNLSN 87


>gi|238895043|ref|YP_002919777.1| cyclopropane fatty acyl phospholipid synthase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|330015580|ref|ZP_08308201.1| cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella sp. MS
           92-3]
 gi|238547359|dbj|BAH63710.1| cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328531440|gb|EGF58281.1| cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella sp. MS
           92-3]
          Length = 382

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           L  I        G+ V++IG G G L + +       V+ +  
Sbjct: 156 LDLICRKLELEPGMRVLDIGCGWGGLAEYMARNYQVSVVGVTI 198


>gi|238026727|ref|YP_002910958.1| cyclopropane fatty acyl phospholipid synthase [Burkholderia glumae
           BGR1]
 gi|237875921|gb|ACR28254.1| Cyclopropane fatty acyl phospholipid synthase [Burkholderia glumae
           BGR1]
          Length = 398

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  +        G T+++IG G G L +        KV  +   +Q   + +      P 
Sbjct: 164 LDMLCRKLRLRPGETLLDIGCGWGGLAKFTAERYGVKVTGVTVSRQQLALAQARCHGLPV 223

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
           RL       L  D+ +       I  +   
Sbjct: 224 RL-------LLRDYRELQGRFDKIVSVGMF 246


>gi|206575918|ref|YP_002238179.1| cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella
           pneumoniae 342]
 gi|288935167|ref|YP_003439226.1| cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella variicola
           At-22]
 gi|290509225|ref|ZP_06548596.1| cyclopropane fatty acyl phospholipid synthase [Klebsiella sp.
           1_1_55]
 gi|206564976|gb|ACI06752.1| cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella
           pneumoniae 342]
 gi|288889876|gb|ADC58194.1| Cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella variicola
           At-22]
 gi|289778619|gb|EFD86616.1| cyclopropane fatty acyl phospholipid synthase [Klebsiella sp.
           1_1_55]
          Length = 382

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           L  I        G+ V++IG G G L + +       V+ +  
Sbjct: 156 LDLICRKLELEPGMRVLDIGCGWGGLAEYMARNYQVSVVGVTI 198


>gi|148926769|ref|ZP_01810449.1| hypothetical protein Cj8486_1463c [Campylobacter jejuni subsp.
          jejuni CG8486]
 gi|145845133|gb|EDK22229.1| hypothetical protein Cj8486_1463c [Campylobacter jejuni subsp.
          jejuni CG8486]
          Length = 257

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 32 DLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
             +L+K+             + ++E+GAG G LT+ML  +   ++  +E +       +
Sbjct: 20 SPFLLEKLVACINDKNKNFKDLNIVEVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQ 79

Query: 88 DISSQHPN 95
            +    N
Sbjct: 80 KFTQNLSN 87


>gi|205356139|ref|ZP_03222906.1| possible methyltransferase [Campylobacter jejuni subsp. jejuni
          CG8421]
 gi|56797551|emb|CAI38895.1| putative methyltransferase [Campylobacter jejuni]
 gi|205345982|gb|EDZ32618.1| possible methyltransferase [Campylobacter jejuni subsp. jejuni
          CG8421]
 gi|284926635|gb|ADC28987.1| putative methyltransferase [Campylobacter jejuni subsp. jejuni
          IA3902]
          Length = 257

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 32 DLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
             +L+K+             + ++E+GAG G LT+ML  +   ++  +E +       +
Sbjct: 20 SPFLLEKLVACINDKNKNLKDLNIVEVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQ 79

Query: 88 DISSQHPN 95
            +    N
Sbjct: 80 KFTQNLSN 87


>gi|62865915|gb|AAY17124.1| unknown [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 151

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 32 DLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
             +L+K+             + ++E+GAG G LT+ML  +   ++  +E +       +
Sbjct: 20 SPFLLEKLVACINDKNKNFKDLNIVEVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQ 79

Query: 88 DISSQHPN 95
            +    N
Sbjct: 80 KFTQNLSN 87


>gi|189347898|ref|YP_001944427.1| biotin biosynthesis protein BioC [Chlorobium limicola DSM 245]
 gi|189342045|gb|ACD91448.1| biotin biosynthesis protein BioC [Chlorobium limicola DSM 245]
          Length = 260

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-----ILKDI 89
           +   I  +        V E+GAG G+LT  +L   + +  +              I+ ++
Sbjct: 35  LADMICGAVPLRSFGKVFEVGAGTGSLTAAILDRCSVETYIAN---DLVAESRSHIVLEV 91

Query: 90  SSQHPNRLEIIQDDA 104
           S   P     +  D 
Sbjct: 92  SRLSPASFAFLSGDI 106


>gi|121613209|ref|YP_001001075.1| putative methyltransferase [Campylobacter jejuni subsp. jejuni
          81-176]
 gi|37719575|gb|AAR01880.1| putative methyltransferase [Campylobacter jejuni]
 gi|56797598|emb|CAI38872.1| putative methyltransferase [Campylobacter jejuni subsp. jejuni
          81-176]
 gi|87249743|gb|EAQ72702.1| putative methyltransferase [Campylobacter jejuni subsp. jejuni
          81-176]
          Length = 257

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 32 DLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
             +L+K+             + ++E+GAG G LT+ML  +   ++  +E +       +
Sbjct: 20 SPFLLEKLVACINDKNKNFKDLNIVEVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQ 79

Query: 88 DISSQHPN 95
            +    N
Sbjct: 80 KFTQNLSN 87


>gi|86150070|ref|ZP_01068298.1| conserved hypothetical protein [Campylobacter jejuni subsp.
          jejuni CF93-6]
 gi|88596002|ref|ZP_01099239.1| conserved hypothetical protein [Campylobacter jejuni subsp.
          jejuni 84-25]
 gi|218563024|ref|YP_002344803.1| putative methyltransferase [Campylobacter jejuni subsp. jejuni
          NCTC 11168]
 gi|85839516|gb|EAQ56777.1| conserved hypothetical protein [Campylobacter jejuni subsp.
          jejuni CF93-6]
 gi|88190843|gb|EAQ94815.1| conserved hypothetical protein [Campylobacter jejuni subsp.
          jejuni 84-25]
 gi|112360730|emb|CAL35529.1| putative methyltransferase [Campylobacter jejuni subsp. jejuni
          NCTC 11168]
 gi|315928039|gb|EFV07358.1| putative methyltransferase [Campylobacter jejuni subsp. jejuni
          DFVF1099]
          Length = 257

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 32 DLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
             +L+K+             + ++E+GAG G LT+ML  +   ++  +E +       +
Sbjct: 20 SPFLLEKLVACINDKNKNLKDLNIVEVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQ 79

Query: 88 DISSQHPN 95
            +    N
Sbjct: 80 KFTQNLSN 87


>gi|330830807|ref|YP_004393759.1| Cyclopropane-fatty-acyl-phospholipid synthase [Aeromonas veronii
           B565]
 gi|328805943|gb|AEB51142.1| Cyclopropane-fatty-acyl-phospholipid synthase [Aeromonas veronii
           B565]
          Length = 418

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQH 93
           L+ I E         ++EIG G G L          +V      +      K+  +    
Sbjct: 176 LRTICERLELGPDDHLLEIGTGWGGLAVYAARHYGCRVTTTTISRAQHDYAKEWIVREGL 235

Query: 94  PNRLEIIQDDALKVD 108
            +R+ ++ +D  K++
Sbjct: 236 GDRITLLLEDYRKLE 250


>gi|307331975|ref|ZP_07611068.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
 gi|306882364|gb|EFN13457.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
          Length = 265

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP 94
           +++ ++     G+TV++ G GPG     L    A    VI +++DQ+        ++ HP
Sbjct: 38  ERMLDALDLRAGLTVLDAGCGPGADLPALAEAVAPGGTVIGVDRDQEMLDAAAARTAAHP 97

Query: 95  NRLEIIQDDA 104
             +E+   D 
Sbjct: 98  C-VELRPGDI 106


>gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573]
 gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573]
          Length = 438

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 14/145 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
                G  +++  A PG  T  +L      +V+ I+ D+     +++   +     ++I 
Sbjct: 251 LAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNAQVIC 310

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLFQKE 157
            DA     + ++      RI+ + P +    +       W+      P    L    Q+E
Sbjct: 311 GDA--RYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAEL----QRE 364

Query: 158 VGERI---TAQKNSPHYGRLSVLTG 179
           + + +        +  Y   S+   
Sbjct: 365 ILDAMWQQLKPGGTLVYATCSITPQ 389


>gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603]
 gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603]
          Length = 438

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 14/145 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
                G  +++  A PG  T  +L      +V+ I+ D+     +++   +     ++I 
Sbjct: 251 LAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNAQVIC 310

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLFQKE 157
            DA     + ++      RI+ + P +    +       W+      P    L    Q+E
Sbjct: 311 GDA--RYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAEL----QRE 364

Query: 158 VGERI---TAQKNSPHYGRLSVLTG 179
           + + +        +  Y   S+   
Sbjct: 365 ILDAMWQQLKPGGTLVYATCSITPQ 389


>gi|237755640|ref|ZP_04584253.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692204|gb|EEP61199.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 291

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 35  ILKKIAESSGSLDGITV-IEIGAGPGNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQ 92
           +++K+ E   +  G  + +E+G G G ++  LL  +   K+I I+  ++   I +  +  
Sbjct: 100 LVEKVIEKLQNAKGELIGLEVGIGSGCISVSLLKNIKNLKIIGIDISEKALEITEKNAEI 159

Query: 93  HP--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           H   +RL++ + D +        N+     +++N PY
Sbjct: 160 HGVLDRLKLFKFDIMNEKMNSL-NLPKLDFVVSNPPY 195


>gi|167987241|gb|ACA13290.1| Pcm [Listonella anguillarum]
          Length = 208

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ +         V+EIG G G  T +L  L    V  IE+       L+  + +
Sbjct: 61  PYIVAKMTQLLELEPQSKVLEIGTGSGYQTAVLAQL-VEHVYSIER----IKSLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+I        D    ++  +P   I
Sbjct: 116 RLKQLDIYNVSTKHGDGWLGWDAKAPFDAI 145


>gi|153938423|ref|YP_001389425.1| hypothetical protein CLI_0117 [Clostridium botulinum F str.
           Langeland]
 gi|152934319|gb|ABS39817.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|295317535|gb|ADF97912.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
          Length = 246

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 13/165 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQ 101
             +G  V+++ +G G ++ +L     A  +I IE  ++   + K     +    ++  I+
Sbjct: 43  IKNGAKVVDLCSGTGIISFILAGKTNASNIIGIEIQKEIADMAKRSIKYNNLQEKVRFIE 102

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D LK + +    I     +  N PY      + N    +         TL    +  + 
Sbjct: 103 GD-LK-NLKLLKGIEKVDVVTVNPPYKTQGTGIININDKNAISRHEICCTLDDVVKAAKV 160

Query: 162 ITAQKN--------SPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
           +   K               ++V+  +  +  ++  I P V  P 
Sbjct: 161 LLKDKGKLYMIHRPDRIVDIMNVMRKYYIEPKLIRTIHPAVDKPP 205


>gi|149919361|ref|ZP_01907843.1| hypothetical protein PPSIR1_04073 [Plesiocystis pacifica SIR-1]
 gi|149819861|gb|EDM79285.1| hypothetical protein PPSIR1_04073 [Plesiocystis pacifica SIR-1]
          Length = 193

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR--LEIIQDDAL 105
           G  V+++ AG G L    L+ GA    ++E+       L         +    +++DDA 
Sbjct: 45  GAHVLDLFAGSGALAIEALSRGASHATLVEQQSGLARFLDRQLEALDLKSATRVVRDDAR 104

Query: 106 KVDFEKFFNISSPIRIIANLPY---NIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
           +    +  + +    ++ + PY   N+   +L   ++     P   ++ + +QK  G+R
Sbjct: 105 RFLDRQGPSATPFDLVLVDPPYAELNLYGEVLDRLLAGAWLAPS-ATVVIEYQKRRGQR 162


>gi|116671889|ref|YP_832822.1| TrkA domain-containing protein [Arthrobacter sp. FB24]
 gi|116611998|gb|ABK04722.1| TrkA-N domain protein [Arthrobacter sp. FB24]
          Length = 228

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 44  GSLDGITVIEIGAG-PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                  V+ IG G  G+ T   L    R+V+ IE+D+             P    +++ 
Sbjct: 10  RPAHNAPVLVIGLGRFGSSTAEQLVKQGREVLAIERDRNLV------QKWAPVLTHVVEA 63

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           DA  +D  +          +  +  +I + +L 
Sbjct: 64  DATNIDALRQLGAQEFSSAVVGVGTSIESSVLI 96


>gi|55378730|ref|YP_136580.1| methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55231455|gb|AAV46874.1| methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 248

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
            +   V+++G G G LT++L       V+ ++ D      
Sbjct: 14 LGECERVLDVGCGTGELTRVLREETDGTVVGLDADTDLLAA 54


>gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
           B565]
 gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
           B565]
          Length = 430

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
               G  V++  A PG  T  LL    +   V+ ++ D+     +++   +     ++I 
Sbjct: 240 DPQPGEWVLDACAAPGGKTAHLLERQPKLAGVVAVDADENRLKRVQENLDRIGLTAKVIH 299

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLL----FNWISADTWPPFWESLTLLFQKE 157
            DA     E+++      RI+ + P +    +       W+  D        L    Q+ 
Sbjct: 300 GDA--AAPEQWWPEGQFDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAEL----QRR 353

Query: 158 VGERITAQ---KNSPHYGRLSVL 177
           +   +  +     +  Y   SVL
Sbjct: 354 ILNALWGKLKSGGTLLYATCSVL 376


>gi|313610250|gb|EFR85522.1| UbiE/COQ5 family methyltransferase [Listeria monocytogenes FSL
          F2-208]
          Length = 197

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 24/52 (46%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          ++       +++++GAG G LT     L    V  ++ D +   +++  + +
Sbjct: 36 KAMPIGKTASILDLGAGTGFLTIPAAKLVDNTVFALDLDAKMLELIESKAEE 87


>gi|295838378|ref|ZP_06825311.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces sp.
           SPB74]
 gi|295826983|gb|EDY42757.2| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces sp.
           SPB74]
          Length = 437

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L  IA   G   G+ ++++G G G++          +V+ +   ++     +  +++   
Sbjct: 193 LDLIATKLGLRPGMRLLDVGCGWGSMALYAAREYGVEVVGVTLSREQAAYARKRAAEEGL 252

Query: 94  PNRLEIIQDDALKVDFEKFFNISS 117
            +++EI   D   V    F  ISS
Sbjct: 253 GDKVEIRVQDYRDVRDGPFDAISS 276


>gi|315503429|ref|YP_004082316.1| methyltransferase type 11 [Micromonospora sp. L5]
 gi|315410048|gb|ADU08165.1| Methyltransferase type 11 [Micromonospora sp. L5]
          Length = 248

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILK 87
          +   L    V+++GAG G LT+ LL L     +V+ +E D      L 
Sbjct: 32 ALDGLHDAQVVDLGAGTGILTRGLLALTGPVAQVVPVEPDPGMRAQLA 79


>gi|296108988|ref|YP_003615937.1| protein-L-isoaspartate O-methyltransferase [Methanocaldococcus
           infernus ME]
 gi|295433802|gb|ADG12973.1| protein-L-isoaspartate O-methyltransferase [Methanocaldococcus
           infernus ME]
          Length = 210

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 41  ESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNR 96
           E      G+ V+EIG G G    +T  L+      V+ IE+  +     +    +   + 
Sbjct: 67  ELLELKPGMKVLEIGTGSGYHAAVTAELVGKDGL-VVSIERIPELAERAEKTLRKLGYDN 125

Query: 97  LEIIQDD 103
           + +I  D
Sbjct: 126 VIVIVGD 132


>gi|190151256|ref|YP_001969781.1| hypothetical protein APP7_1987 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264607|ref|ZP_07546189.1| tRNA (adenine-N(6)-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|262827836|sp|B3H2W9|TRMN6_ACTP7 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|189916387|gb|ACE62639.1| hypothetical protein APP7_1987 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870070|gb|EFN01832.1| tRNA (adenine-N(6)-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 236

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 25/147 (17%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD--ISSQHPNRLE 98
           +       ++++G G G +  ML        ++  +E +   +    +   +S   +RL+
Sbjct: 34  ADIRHKRQILDLGTGTGLVAIMLAQRTDENTRISALELEPNAYRQAVENCRNSAFSDRLQ 93

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY---NIGTRL-------------LFNWISADT 142
           + Q D L   F + F++     I++N PY   ++ +R              L   + A  
Sbjct: 94  VYQGDVLDYHFHQKFDL-----IVSNPPYFSESLASRSYERDLARAATQSHLDWLLQAKK 148

Query: 143 WPPFWESLTLLFQKEVGERITAQKNSP 169
           W      ++ +   E  E++  Q  + 
Sbjct: 149 WLAEQGEISFILPFEAAEKLVEQSRTS 175


>gi|154147914|ref|YP_001405804.1| protein-L-isoaspartate O-methyltransferase [Campylobacter hominis
           ATCC BAA-381]
 gi|153803923|gb|ABS50930.1| protein-L-isoaspartate O-methyltransferase [Campylobacter hominis
           ATCC BAA-381]
          Length = 214

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           Y + P+  +G  ++     + K+   +       ++EIG G G    +L  +   +V  I
Sbjct: 50  YDLNPQPILGNQWISSPLTVAKMIMQTECDKCENILEIGCGSGYAAAVLSKI-VNRVFTI 108

Query: 77  EKDQQFFPILKDISSQHP-NRLEIIQDD 103
           E+ ++     K        + + +  DD
Sbjct: 109 ERIERLVKEAKKHFENLGISNVNVRYDD 136


>gi|86740861|ref|YP_481261.1| ubiquinone/menaquinone biosynthesis methylase-like protein [Frankia
           sp. CcI3]
 gi|86567723|gb|ABD11532.1| Methylase involved in ubiquinone/menaquinone biosynthesis-like
           [Frankia sp. CcI3]
          Length = 325

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +L+    ++       V+++G G G L    L L AR  +    D     +L+ +    P
Sbjct: 115 LLEACITAANPQPADVVLDLGCGDGAL-VARLPLVARLDL---LDS-SVRMLERVPLSRP 169

Query: 95  NRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
            R E  ++  D L    +  ++    +  + ++ ++  +R L      
Sbjct: 170 GRKETRLVHADYLDYRPDTRYDAIIAVMSLHHVDHDQISRALEKCYRE 217


>gi|78043457|ref|YP_359898.1| hypothetical protein CHY_1052 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995572|gb|ABB14471.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 239

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 19/86 (22%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q+FL                +   V+E+G G    T  LL      + V++ ++     L
Sbjct: 39  QHFL----------------NKTKVLEVGCGTAA-TSYLLNNN-FNITVLDYNEDLINKL 80

Query: 87  KDISSQHPNR-LEIIQDDALKVDFEK 111
           K + + + N+ + I+  D   + FE 
Sbjct: 81  KTLFTYYLNKNINIVLGDMFNMPFED 106


>gi|76812251|ref|YP_331765.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1710b]
 gi|76581704|gb|ABA51179.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
           pseudomallei 1710b]
          Length = 519

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE  G+ DG+ V++  A PG  T  +L L   +V+ +E D    P + +  ++     ++
Sbjct: 319 AEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADV 378

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-----FNWISADTWPPFW 147
              DA   D  ++ +     R++A++P +  + ++       W+      P  
Sbjct: 379 RVGDA--ADPAQWHDGRPFDRVLADVPCS-ASGIVRRHPDIRWLRRAADIPAL 428


>gi|56412535|ref|YP_149610.1| hypothetical protein SPA0276 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361470|ref|YP_002141106.1| hypothetical protein SSPA0261 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81821605|sp|Q5PNB8|TRMN6_SALPA RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|262828623|sp|B5BAS2|TRMN6_SALPK RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|262831261|sp|A9N0W9|TRMN6_SALPB RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|56126792|gb|AAV76298.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197092946|emb|CAR58376.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 245

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQH--PNRLE 98
           +   D   +++IG G G L  ML       V    +E D       ++  +    P+R+ 
Sbjct: 40  APVADVKRILDIGTGSGLLALMLAQRTDDNVPIDAVELDAGAAMQAQENVAHSPWPHRIT 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  DD  +    +         II+N PY 
Sbjct: 100 VHTDDIQRWAPRQTVRFD---LIISNPPYY 126


>gi|24650257|ref|NP_651461.1| CG14544 [Drosophila melanogaster]
 gi|7301439|gb|AAF56565.1| CG14544 [Drosophila melanogaster]
 gi|21430860|gb|AAM51108.1| SD21096p [Drosophila melanogaster]
 gi|220950292|gb|ACL87689.1| CG14544-PA [synthetic construct]
          Length = 317

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKDISSQH 93
           +  I        G  V+E G G G+L+   L        +   D  +      +D   +H
Sbjct: 100 ISMIIHQLEVRPGAVVVESGTGSGSLSHYFLRALKPTGHLHTFDFHEARADQARDEFRRH 159

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-----TWPPF 146
              + + +   D   + F    +  +    +     ++     F  +        ++ P 
Sbjct: 160 GIADFVTVYHRDVCNLGFGAELDGKADAVFLDLPAPDLAVPHAFKALKLSGGRFCSFSPC 219

Query: 147 WESLTLLFQK 156
            E      Q+
Sbjct: 220 IEQSQRCIQE 229


>gi|146279632|ref|YP_001169790.1| S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl
           transferase-like protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557873|gb|ABP72485.1| S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl
           transferase-like protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 216

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 28  NFLL--DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFP 84
           +FLL  D  I      +     G  V+EI  G G    ++       ++  ++  ++   
Sbjct: 27  HFLLGRDELIA-----ALAPPPGARVLEIACGTGRNLDLIDRRWPGLRLYGLDISEEM-- 79

Query: 85  ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            L+   ++   R  + Q DA   D    F  +   RI+ +   ++
Sbjct: 80  -LRTARARLGTRARLAQGDATDFDARALFGAARFERIVISYALSM 123


>gi|67595591|ref|XP_666010.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54656907|gb|EAL35781.1| similar to CG14544 gene product [Cryptosporidium hominis]
          Length = 313

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKD-QQFFPILKDISSQ 92
           +  I     +  G  +IE G G G+LT  L         V   E D ++    ++D    
Sbjct: 129 ISLICVLLDASPGKNIIEAGTGSGSLTVSLCRSTNPGGAVYTFEYDQKRHLESIQDFQKY 188

Query: 93  HPNRLEIIQDDALK 106
             + +     D  K
Sbjct: 189 GISNVVCQHRDVCK 202


>gi|66358012|ref|XP_626184.1| GCD14 RNA methylase [Cryptosporidium parvum Iowa II]
 gi|46227020|gb|EAK87970.1| GCD14 RNA methylase [Cryptosporidium parvum Iowa II]
 gi|323508889|dbj|BAJ77337.1| cgd5_2470 [Cryptosporidium parvum]
          Length = 312

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKD-QQFFPILKDISSQ 92
           +  I     +  G  +IE G G G+LT  L         V   E D ++    ++D    
Sbjct: 128 ISLICVLLDASPGKNIIEAGTGSGSLTVSLCRSTNPGGAVYTFEYDQKRHLESIQDFQKY 187

Query: 93  HPNRLEIIQDDALK 106
             + +     D  K
Sbjct: 188 GISNVVCQHRDVCK 201


>gi|331694653|ref|YP_004330892.1| type 11 methyltransferase [Pseudonocardia dioxanivorans CB1190]
 gi|326949342|gb|AEA23039.1| Methyltransferase type 11 [Pseudonocardia dioxanivorans CB1190]
          Length = 218

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           V+++G GPG +T  L   G   V  ++   +     + +  +
Sbjct: 58 PVLDVGCGPGTITAYLAERG-LDVSGVDLSPRMIEHARRLHPE 99


>gi|321441999|gb|ADW85414.1| arg methyltransferase [Janiodes laverna nigropuncta]
          Length = 244

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G TV++IG G G L+      GA KVI +E         + I  ++     +EI++
Sbjct: 19  HLFKGKTVLDIGCGTGILSMFAAKAGATKVIAVEC-SNIVDYARKIIEANGLSEVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|311108974|ref|YP_003981827.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310763663|gb|ADP19112.1| tRNA (guanine-N(7)-)-methyltransferase [Achromobacter xylosoxidans
           A8]
          Length = 274

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
            ++      TV+EIG G G  T+ + L       + +E  +     +L+ I       L 
Sbjct: 94  AAAFGRQAPTVLEIGFGMGETTEKIALARPDDNFLGVEVFNAGVGSLLRRIEDSSIPNLR 153

Query: 99  IIQDDALKVDFEKFFNIS 116
           IIQ DA++V  +     S
Sbjct: 154 IIQHDAVEVVRDMIAPDS 171


>gi|257878705|ref|ZP_05658358.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,230,933]
 gi|257881346|ref|ZP_05660999.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,502]
 gi|257890564|ref|ZP_05670217.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,410]
 gi|260558265|ref|ZP_05830461.1| methyltransferase [Enterococcus faecium C68]
 gi|257812933|gb|EEV41691.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,230,933]
 gi|257817004|gb|EEV44332.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,502]
 gi|257826924|gb|EEV53550.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,410]
 gi|260075439|gb|EEW63745.1| methyltransferase [Enterococcus faecium C68]
          Length = 201

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              D   ++++G G G +   L     R V +++ +++       ++  +  R +I   D
Sbjct: 57  ELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVS----LAQGNAKRNQIEHVD 112

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQKEVGERI 162
             + +  +  +  +   I++N P   G +++   ++          +LT++ QK+ G   
Sbjct: 113 IHQSNIYEAVHEETYAAIVSNPPIRAGKKVVHEILTGAYPRLKKGGTLTIVIQKKQGAPS 172

Query: 163 TAQKNSPHYG 172
             +K    +G
Sbjct: 173 AQKKMEETFG 182


>gi|229525314|ref|ZP_04414719.1| predicted O-methyltransferase [Vibrio cholerae bv. albensis VL426]
 gi|229338895|gb|EEO03912.1| predicted O-methyltransferase [Vibrio cholerae bv. albensis VL426]
          Length = 240

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK 106
           T+++IG G G L+ M         +  ++ +Q  +   +    Q P   R+E    D L 
Sbjct: 45  TILDIGCGTGLLSLMCAQRFPHAHITALDIEQSAYQAAEHNRQQSPWAERIECKHADILH 104

Query: 107 VDFEKFFNISSPIRIIANLPYNIG 130
               + F       II N PY   
Sbjct: 105 WQPSERF-----AAIICNPPYFNS 123


>gi|221126325|ref|XP_002165902.1| PREDICTED: similar to cyclopropane fatty acid synthase [Hydra
           magnipapillata]
          Length = 410

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +++  + +G   G  V+EIG G G L +M
Sbjct: 181 VRRALQEAGVQAGDRVLEIGCGWGALAEM 209


>gi|209522664|ref|ZP_03271222.1| C-methyltransferase [Arthrospira maxima CS-328]
 gi|209496713|gb|EDZ97010.1| C-methyltransferase [Arthrospira maxima CS-328]
          Length = 396

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            N+ +++  +    +  T+IEIG G G    +L  LG  +   I  D  + P L D   +
Sbjct: 88  QNLAERLINTYNLQEK-TIIEIGCGKGEFLTLLCELGNNR--GIGFDPTYVP-LPDH-EK 142

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
             +RL+ I+D    +  EK+ +         +   +I T 
Sbjct: 143 LGDRLQFIRD----LYSEKYADYQGNFICCRHTLEHIPTP 178


>gi|149187528|ref|ZP_01865825.1| hypothetical transcriptional regulator [Vibrio shilonii AK1]
 gi|148838408|gb|EDL55348.1| hypothetical transcriptional regulator [Vibrio shilonii AK1]
          Length = 381

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 40  AESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           A++   L      ++EIG G G  T++L       +  ++ +      L +  ++
Sbjct: 165 AKALNLLPTTPRNILEIGCGKGLATKVLAEQSNAVITAVDNESTALERLSERFAE 219


>gi|126668278|ref|ZP_01739238.1| cyclopropane-fatty-acyl-phospholipid synthase [Marinobacter sp.
           ELB17]
 gi|126627304|gb|EAZ97941.1| cyclopropane-fatty-acyl-phospholipid synthase [Marinobacter sp.
           ELB17]
          Length = 424

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           L  I        G  V+EIG G G             V       +   + K    +   
Sbjct: 186 LDVICRKLELKPGDQVLEIGTGWGGFAIHAAKHYGCHVTTTTISAEQLALAKQRVEAEGL 245

Query: 94  PNRLEIIQDD 103
            +R+ ++ DD
Sbjct: 246 QDRITLLFDD 255


>gi|110681297|ref|YP_684304.1| methyltransferase, putative [Roseobacter denitrificans OCh 114]
 gi|109457413|gb|ABG33618.1| methyltransferase, putative [Roseobacter denitrificans OCh 114]
          Length = 221

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 2/65 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEI 99
            +S       V+EIG G G  T + L          +  +    I    +    P  +  
Sbjct: 47  AASLLRPSDRVLEIGCGTGT-TALRLAPSVMHYTATDGARAMIGIADAKLGPGAPANVSF 105

Query: 100 IQDDA 104
              DA
Sbjct: 106 HHADA 110


>gi|69247085|ref|ZP_00604217.1| Methyltransferase small [Enterococcus faecium DO]
 gi|258615232|ref|ZP_05713002.1| hypothetical protein EfaeD_05923 [Enterococcus faecium DO]
 gi|293562924|ref|ZP_06677391.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1162]
 gi|293567952|ref|ZP_06679293.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1071]
 gi|294623795|ref|ZP_06702623.1| 16S RNA methylase [Enterococcus faecium U0317]
 gi|314937587|ref|ZP_07844913.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133a04]
 gi|314942914|ref|ZP_07849727.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133C]
 gi|314947950|ref|ZP_07851354.1| methyltransferase small domain protein [Enterococcus faecium
           TX0082]
 gi|314950866|ref|ZP_07853935.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133A]
 gi|314991485|ref|ZP_07856962.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133B]
 gi|314994995|ref|ZP_07860115.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194969|gb|EAN09436.1| Methyltransferase small [Enterococcus faecium DO]
 gi|291589537|gb|EFF21344.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1071]
 gi|291596749|gb|EFF27972.1| 16S RNA methylase [Enterococcus faecium U0317]
 gi|291605050|gb|EFF34517.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1162]
 gi|313590721|gb|EFR69566.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133a01]
 gi|313593965|gb|EFR72810.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133B]
 gi|313596875|gb|EFR75720.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133A]
 gi|313598386|gb|EFR77231.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133C]
 gi|313642964|gb|EFS07544.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133a04]
 gi|313645548|gb|EFS10128.1| methyltransferase small domain protein [Enterococcus faecium
           TX0082]
          Length = 210

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              D   ++++G G G +   L     R V +++ +++       ++  +  R +I   D
Sbjct: 66  ELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVS----LAQGNAKRNQIEHVD 121

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQKEVGERI 162
             + +  +  +  +   I++N P   G +++   ++          +LT++ QK+ G   
Sbjct: 122 IHQSNIYEAVHEETYAAIVSNPPIRAGKKVVHEILTGAYPRLKKGGTLTIVIQKKQGAPS 181

Query: 163 TAQKNSPHYG 172
             +K    +G
Sbjct: 182 AQKKMEETFG 191


>gi|319936942|ref|ZP_08011352.1| modification methylase [Coprobacillus sp. 29_1]
 gi|319807878|gb|EFW04457.1| modification methylase [Coprobacillus sp. 29_1]
          Length = 284

 Score = 35.9 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISS 91
            NIL KI +     + I + ++G G G +   L L      V+  +  ++   + +  + 
Sbjct: 100 ENILYKIDDYFEDYESIDLCDVGTGSGAIAISLALEESKLNVVATDISKEALEVARLNAQ 159

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRI-IANLPY 127
           +    +E  Q D L    E   +    + I ++N PY
Sbjct: 160 ELGANIEFYQGDML----EPLIDREMKVDIFVSNPPY 192


>gi|312899932|ref|ZP_07759250.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0470]
 gi|311292928|gb|EFQ71484.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0470]
          Length = 277

 Score = 35.9 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEKALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|251772190|gb|EES52760.1| S-adenosyl-methyltransferase MraW [Leptospirillum
           ferrodiazotrophum]
          Length = 305

 Score = 35.9 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQ 101
                G   ++   G G  T+ +L  G   V+ I++D+      ++ +   +P+RL II 
Sbjct: 24  LDVRPGQWYVDANLGGGGHTREILARGG-SVVAIDRDKGAVLAAREHLLPLYPDRLRIIH 82

Query: 102 DD 103
            +
Sbjct: 83  GN 84


>gi|224418458|ref|ZP_03656464.1| SAM dependent methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|253827774|ref|ZP_04870659.1| putative O-methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313141990|ref|ZP_07804183.1| methyltransferase small [Helicobacter canadensis MIT 98-5491]
 gi|253511180|gb|EES89839.1| putative O-methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313131021|gb|EFR48638.1| methyltransferase small [Helicobacter canadensis MIT 98-5491]
          Length = 230

 Score = 35.9 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 58/157 (36%), Gaps = 15/157 (9%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
                V+E+G+G G L  +        + +IEK+ +   + +     +    +++  D L
Sbjct: 28  KPKKQVLEVGSGSGVLGLLCAKEVEMDLTMIEKNPKMLELCQHNLRINGVEAKLMGGDFL 87

Query: 106 KVDFEKFFNISSPIRIIANLPYN---IGTRLLFNWISADTWPPFWESLT------LLFQK 156
           + +   F ++     +     Y+   I ++     ++       + S+       L  Q 
Sbjct: 88  EYN---FLDLKFDYILSNPPFYHNGVIRSKNKDICLARYEENLPFSSMVKKINALLKPQG 144

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPH 193
           E      ++++   +G L     ++ +  ++  + P 
Sbjct: 145 EFIFCYDSRESFKVFGIL---FEFKIRPIIVRYVHPR 178


>gi|156553094|ref|XP_001599343.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 276

 Score = 35.9 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           G      + E+G G GNL   LL       K+   +   +    +K      P++++  Q
Sbjct: 83  GVETPQCLFEVGCGVGNLIYPLLEDNINFQKIFACDLSPRAIEFVKSHKLYDPDKVKAFQ 142

Query: 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGER 161
            D      E  F+           P +I T     ++ +   P  ++S+T    K + + 
Sbjct: 143 TDI---TMENCFDEID-------CPIDIAT---LVFVLSAIHPDKFKSVTNNLYKIMNKN 189

Query: 162 ITAQKNSPHYGRLSVLTGWRTKA 184
                    YGR   +   R KA
Sbjct: 190 GV--VLFRDYGRYD-MAQLRFKA 209


>gi|126661008|ref|ZP_01732094.1| precorrin-6B methylase [Cyanothece sp. CCY0110]
 gi|126617707|gb|EAZ88490.1| precorrin-6B methylase [Cyanothece sp. CCY0110]
          Length = 196

 Score = 35.9 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRL 97
             +        V +IGAG G +  ++ L     +VI +E+DQ    +++    +     +
Sbjct: 33  ISALRLKQDSVVWDIGAGTGTIPIEIGLLCPDSQVIAVERDQDVVNLIRRNCDRFEVQNV 92

Query: 98  EIIQDDA 104
           +I +  A
Sbjct: 93  KIFEGQA 99


>gi|77462694|ref|YP_352198.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387112|gb|ABA78297.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 403

 Score = 35.9 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-----DQQFFPILKDISS 91
             + +  G+  G  V+EIG G G   +        +V  +       D   + + +   +
Sbjct: 176 ASMVDRIGAQPGEHVLEIGCGWGGFAEYAARERGLRVTGLTISQAQHD---YAVERIARA 232

Query: 92  QHPNRLEIIQDD 103
              +R+EI   D
Sbjct: 233 GLSDRVEIRLQD 244


>gi|57168354|ref|ZP_00367488.1| protein-L-isoaspartate O-methyltransferase [Campylobacter coli
           RM2228]
 gi|57020162|gb|EAL56836.1| protein-L-isoaspartate O-methyltransferase [Campylobacter coli
           RM2228]
          Length = 209

 Score = 35.9 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 18/151 (11%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           ++     + K+  +    D  +V+EIG G G     +L+   R+V  IE+       L  
Sbjct: 58  WISSPLTVAKMTMALNFKDADSVLEIGCGSGY-QAAILSKVIRRVFTIER----IENLAK 112

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR-LLFNWIS-------- 139
            ++Q    LE+   +    D +  +   +P   I    Y      +L + +S        
Sbjct: 113 KAAQTFRELELFNINVKFEDGQNGWKNYAPYDRILFSAYTTQLPEILLDQLSDGGILVAP 172

Query: 140 ----ADTWPPFWESLTLLFQKEVGERITAQK 166
                  +           QKE+ E      
Sbjct: 173 ILHNGKQFITRITKNGTHLQKEILEECLFVP 203


>gi|331696607|ref|YP_004332846.1| type 12 methyltransferase [Pseudonocardia dioxanivorans CB1190]
 gi|326951296|gb|AEA24993.1| Methyltransferase type 12 [Pseudonocardia dioxanivorans CB1190]
          Length = 235

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRL 97
             ++       V+++G G G     L   G   V V++        L+  + +      +
Sbjct: 9   VRAARPGLRPLVLDVGGGSGAWAVPLAAAGC-TVTVVDTSPNALAALQRRAREAGVGQHV 67

Query: 98  EIIQDDA 104
             +Q D 
Sbjct: 68  TAVQGDV 74


>gi|297562400|ref|YP_003681374.1| methylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846848|gb|ADH68868.1| methylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
          Length = 231

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 8/117 (6%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D ++L+ +    G + G +V+++G+G G L       GA  +  I+  ++       ++S
Sbjct: 29  DTSLLRTVLRQRGRVAGRSVLDVGSGTGALGIEAFRAGAASLTSIDLSRRSV-----LAS 83

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
              +RL  +     + D            ++AN PY          +        W+
Sbjct: 84  WLNSRLHGVPATVRRGDLFAPVAPHRFDLVLANPPYM---PATGRRLPRHRMARCWD 137


>gi|288575622|ref|ZP_05977331.2| menaquinone biosynthesis methyltransferase [Neisseria mucosa ATCC
           25996]
 gi|288567363|gb|EFC88923.1| menaquinone biosynthesis methyltransferase [Neisseria mucosa ATCC
           25996]
          Length = 239

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS-SQHP 94
           ++I +         ++E+G G G  +  L     + +++  +   +     +     +H 
Sbjct: 77  QQIVQRLHLAPHHHILEVGCGAGYFSPTLAQSVPQGRLVAADIQPEMLAYTEKRLRRRHI 136

Query: 95  NRLEIIQDDALKVDFEK 111
           + ++    D    DF  
Sbjct: 137 DNVDYYLCDGTHFDFPD 153


>gi|219112515|ref|XP_002178009.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410894|gb|EEC50823.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 252

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           + K  E +  L+   +++IG G G +      L   + + I+       + ++++ +   
Sbjct: 96  IAKFVEFASLLESDVLLDIGCGDGRICVSAARLSGCRAVGIDVSPLCIAMARELAREENL 155

Query: 94  PNRLEIIQDDA 104
            +RL   + DA
Sbjct: 156 EDRLSFFEADA 166


>gi|190344300|gb|EDK35950.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 342

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
                  V+++G G G L+      GA+ V  ++         ++I   +    ++ ++Q
Sbjct: 61  HLFKDKVVLDVGCGTGILSMFAAKAGAKHVYAVDM-SNIIEKAREIVNLNGFEGQITLLQ 119

Query: 102 D 102
            
Sbjct: 120 G 120


>gi|163839486|ref|YP_001623891.1| 16S rRNA m2G1207 methyltransferase [Renibacterium salmoninarum ATCC
           33209]
 gi|162952962|gb|ABY22477.1| 16S rRNA m2G1207 methyltransferase [Renibacterium salmoninarum ATCC
           33209]
          Length = 205

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 16/132 (12%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           +D      +AE+        +++IG G G   LT  L +  AR +  ++ +++   +  +
Sbjct: 46  IDKGAAVLLAEAPAPASDGDLLDIGCGWGPIALTLALKSPQAR-IHAVDVNERSLALTAE 104

Query: 89  ISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW 147
            ++      +++ Q D L  D    F       I +N P  +G  +L + +   TW P  
Sbjct: 105 NAAALGLGNVQVSQPDEL--DPSIRFQT-----IWSNPPIRVGKDVLHHIL--RTWLPRL 155

Query: 148 E---SLTLLFQK 156
               +  L+ QK
Sbjct: 156 TPSGTAYLVVQK 167


>gi|162454533|ref|YP_001616900.1| hypothetical protein sce6253 [Sorangium cellulosum 'So ce 56']
 gi|161165115|emb|CAN96420.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 287

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 43  SGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
                G  ++E+G G G    L + ++      V  IE D         +    P+R E
Sbjct: 119 LDLGPGDRLLELGTGTGYGVALARRIVG-PTGHVASIEIDPVLHARAVRLLGARPDRQE 176


>gi|163801959|ref|ZP_02195855.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio sp. AND4]
 gi|159174100|gb|EDP58908.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio sp. AND4]
          Length = 418

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP 94
           +++ +         VIEIG G G +   +       V    I ++Q  +   K       
Sbjct: 191 ERLCQQLELKPSDRVIEIGTGWGAMAIYMADRYGCHVTTTTISEEQHAYAERKIKERGLE 250

Query: 95  NRLEIIQDD 103
            ++ ++++D
Sbjct: 251 GKVTLLKED 259


>gi|146421451|ref|XP_001486671.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 342

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
                  V+++G G G L+      GA+ V  ++         ++I   +    ++ ++Q
Sbjct: 61  HLFKDKVVLDVGCGTGILSMFAAKAGAKHVYAVDM-SNIIEKAREIVNLNGFEGQITLLQ 119

Query: 102 D 102
            
Sbjct: 120 G 120


>gi|152997600|ref|YP_001342435.1| HemK family modification methylase [Marinomonas sp. MWYL1]
 gi|150838524|gb|ABR72500.1| modification methylase, HemK family [Marinomonas sp. MWYL1]
          Length = 282

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 36  LKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            +++ E +           ++++G G G +   L +   +   V+  D         ++ 
Sbjct: 96  TERLVEVALSVLDISKVNRILDLGTGTGAIALSLASEQPKS-TVMGVD--LVEDAVALAK 152

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPY 127
           ++  R ++   D L+  +        P   I++N PY
Sbjct: 153 RNALRNKLSNVDFLQSSWFDALEGCEPFDLIVSNPPY 189


>gi|16765962|ref|NP_461577.1| transferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|238912707|ref|ZP_04656544.1| putative transferase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|81853695|sp|Q8ZMX8|TRMN6_SALTY RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|262831275|sp|C0PVY6|TRMN6_SALPC RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|16421192|gb|AAL21536.1| putative transferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|261247840|emb|CBG25669.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994782|gb|ACY89667.1| putative transferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159193|emb|CBW18708.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913636|dbj|BAJ37610.1| putative transferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|322613359|gb|EFY10301.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620437|gb|EFY17302.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625095|gb|EFY21924.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629461|gb|EFY26237.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633848|gb|EFY30587.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635454|gb|EFY32165.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639870|gb|EFY36549.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644244|gb|EFY40788.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649936|gb|EFY46356.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654881|gb|EFY51198.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658191|gb|EFY54457.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661737|gb|EFY57955.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669718|gb|EFY65864.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673275|gb|EFY69380.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674936|gb|EFY71023.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682959|gb|EFY78977.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685620|gb|EFY81615.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323130980|gb|ADX18410.1| putative transferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323191952|gb|EFZ77190.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200415|gb|EFZ85496.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201314|gb|EFZ86381.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208385|gb|EFZ93325.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211539|gb|EFZ96377.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215971|gb|EGA00703.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221752|gb|EGA06160.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225640|gb|EGA09867.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229358|gb|EGA13482.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235327|gb|EGA19411.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237487|gb|EGA21550.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245242|gb|EGA29243.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246467|gb|EGA30448.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254002|gb|EGA37824.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259052|gb|EGA42700.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261975|gb|EGA45540.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267758|gb|EGA51239.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269683|gb|EGA53135.1| tRNA (adenine-N(6)-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|332989571|gb|AEF08554.1| putative transferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 245

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQH--PNRLE 98
           +   D   +++IG G G L  ML       V    +E D       ++  +    P+R+ 
Sbjct: 40  APVADVKRILDIGTGSGLLALMLAQRTDDNVPIDAVELDAGAAMQAQENVAHSPWPHRIT 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  DD  +    +         II+N PY 
Sbjct: 100 VHTDDIQRWAPRQTVRFD---LIISNPPYY 126


>gi|73662476|ref|YP_301257.1| methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494991|dbj|BAE18312.1| putative methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 238

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I          ++++IG G G+LT   L     +V  ++       I    ++Q  N + 
Sbjct: 26  IVNHFA-GKKHSILDIGCGTGSLTS--LFTEFEQVTGMDLSVDMLAI----AAQKSNVVN 78

Query: 99  IIQDDALKVDFEKFFNI 115
            I+ D    + E+ F++
Sbjct: 79  WIEADMTDFELEQHFDV 95


>gi|330816152|ref|YP_004359857.1| Cyclopropane fatty acyl phospholipid synthase [Burkholderia
           gladioli BSR3]
 gi|327368545|gb|AEA59901.1| Cyclopropane fatty acyl phospholipid synthase [Burkholderia
           gladioli BSR3]
          Length = 398

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  +        G T+++IG G G L +        KV  +   ++   + ++     P 
Sbjct: 164 LDMLCRKLQLKPGETLLDIGCGWGGLAKFAAERYGVKVTGVTVSKEQLALAQERCRGLP- 222

Query: 96  RLEIIQDD 103
            + ++  D
Sbjct: 223 -VTLLLQD 229


>gi|260426033|ref|ZP_05780012.1| protein-L-isoaspartate O-methyltransferase [Citreicella sp. SE45]
 gi|260420525|gb|EEX13776.1| protein-L-isoaspartate O-methyltransferase [Citreicella sp. SE45]
          Length = 214

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + ++        V+E+G G G     +L+L AR+V  +++ ++     + +   
Sbjct: 63  PSVVALMTQALRLTGREKVLEVGTGSGY-QAAILSLLARRVYTVDRHRRLVAEARAVF-- 119

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
             + L+++   A   D        +P   I
Sbjct: 120 --DALDLVNITAFTADGSHGLPDQAPFDRI 147


>gi|260221919|emb|CBA30964.1| hypothetical protein Csp_C26180 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 382

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQM 64
           +++  + +G   G  V+EIG G G L +M
Sbjct: 153 VRRALQEAGVQAGDRVLEIGCGWGALAEM 181


>gi|268317206|ref|YP_003290925.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
 gi|262334740|gb|ACY48537.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
          Length = 260

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 30/69 (43%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +  TV+E+G G G+L   L  LG  +    ++      + ++ +++  + +   Q D   
Sbjct: 46  EAQTVLELGCGTGSLALALQPLGPYRYRASDRSAAMLAVAREKAARAGSSVVFEQADFSD 105

Query: 107 VDFEKFFNI 115
               +  ++
Sbjct: 106 YRVAEPVDV 114


>gi|224369422|ref|YP_002603586.1| PfkB-family carbohydrate kinase [Desulfobacterium autotrophicum
           HRM2]
 gi|223692139|gb|ACN15422.1| PfkB-family carbohydrate kinase [Desulfobacterium autotrophicum
           HRM2]
          Length = 324

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDF 109
           +++IG G G L   L   GAR V  I+  +      ++ I      R++++  D  + D 
Sbjct: 107 ILDIGCGTGLLATALADRGAR-VTAIDFSRGMLDRCRENIPKALEGRIKLVCMDWDRADI 165

Query: 110 EKF-FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           +   ++    + +    P       L   ++          
Sbjct: 166 KALGWHRHFDLTLAFMSPAIATPEALNRMMATSKNACAIRG 206


>gi|254476257|ref|ZP_05089643.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11]
 gi|214030500|gb|EEB71335.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11]
          Length = 330

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           G G  ++ LL  GA  VI +++D   F + +D    +  RL   Q    ++D
Sbjct: 37  GAGGYSRGLLEAGADHVIGVDRDPLAFEMAQDWIGDYDGRLTFQQGVFSRMD 88


>gi|171318312|ref|ZP_02907472.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia ambifaria
           MEX-5]
 gi|171096514|gb|EDT41411.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia ambifaria
           MEX-5]
          Length = 249

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        ++EIG G G  T  +         + +E  +     +LK I  Q    + 
Sbjct: 68  DAVFGRSAPRILEIGFGMGASTAEIAAHRPGDDFLGVEVHEPGVGALLKLIGEQDLPNIR 127

Query: 99  IIQDDALKVDFEKFFNIS 116
           IIQ DA++V        S
Sbjct: 128 IIQHDAVEVLEHMLAPES 145


>gi|170699816|ref|ZP_02890848.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia ambifaria
           IOP40-10]
 gi|170135268|gb|EDT03564.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia ambifaria
           IOP40-10]
          Length = 255

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        ++EIG G G  T  +         + +E  +     +LK I  Q    + 
Sbjct: 74  DAVFGRSAPRILEIGFGMGASTAEIAAHRPGDDFLGVEVHEPGVGALLKLIGEQDLPNIR 133

Query: 99  IIQDDALKVDFEKFFNIS 116
           IIQ DA++V        S
Sbjct: 134 IIQHDAVEVLEHMLAPES 151


>gi|134294961|ref|YP_001118696.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia vietnamiensis
           G4]
 gi|166988127|sp|A4JC58|TRMB_BURVG RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|134138118|gb|ABO53861.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 255

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 14/140 (10%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        ++EIG G G  T  +         + +E  +     +LK I  Q    + 
Sbjct: 74  DAVFGRSAPRILEIGFGMGASTAEIAAHRPGDDFLGVEVHEPGVGALLKLIGEQGLTNIR 133

Query: 99  IIQDDALKVDFEKFFNI---------SSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
           IIQ DA++V                   P     +    +    L   ++A   P  +  
Sbjct: 134 IIQHDAVEVLEHMLAPESLDGVHIFFPDPWHKARHHKRRLIQPPLVAQLAARLKPGAYLH 193

Query: 150 LTLLFQ---KEVGERITAQK 166
               +Q   +++ E ++A+ 
Sbjct: 194 CATDWQNYAEQMLEVLSAEP 213


>gi|91214962|ref|ZP_01251934.1| hypothetical protein P700755_11732 [Psychroflexus torquis ATCC
           700755]
 gi|91186567|gb|EAS72938.1| hypothetical protein P700755_11732 [Psychroflexus torquis ATCC
           700755]
          Length = 238

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQ 101
                +++++GAG G L   +     A  +  +E D   F    D     P  +RL    
Sbjct: 35  PETVQSILDVGAGTGILALQMAQRSFAETIDAVEIDPDAFEECVDNFENSPWGDRLYCYH 94

Query: 102 DDA 104
            D 
Sbjct: 95  SDF 97


>gi|19115381|ref|NP_594469.1| trans-aconitate 3-methyltransferase (predicted)
          [Schizosaccharomyces pombe 972h-]
 gi|74698444|sp|Q9UTA9|YL89_SCHPO RecName: Full=Uncharacterized methyltransferase C25B8.09
 gi|6469296|emb|CAB61775.1| trans-aconitate 3-methyltransferase (predicted)
          [Schizosaccharomyces pombe]
          Length = 251

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 30/65 (46%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            I + + +     +  T++E+GAG G LT  ++    +++I ++   +   +LK     
Sbjct: 22 PQITEWLNDEFSVNETSTILELGAGSGKLTPRIIASQPKEIIAVDTYVEMLDVLKKKFPN 81

Query: 93 HPNRL 97
             R+
Sbjct: 82 VDCRV 86


>gi|91790116|ref|YP_551068.1| protein-L-isoaspartate O-methyltransferase [Polaromonas sp. JS666]
 gi|123059344|sp|Q123X2|PIMT2_POLSJ RecName: Full=Protein-L-isoaspartate O-methyltransferase 2;
           AltName: Full=L-isoaspartyl protein carboxyl
           methyltransferase 2; AltName: Full=Protein L-isoaspartyl
           methyltransferase 2; AltName:
           Full=Protein-beta-aspartate methyltransferase 2;
           Short=PIMT 2
 gi|91699341|gb|ABE46170.1| protein-L-isoaspartate O-methyltransferase [Polaromonas sp. JS666]
          Length = 211

 Score = 35.9 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + + +    G  V+E+G G G    ++  L AR V  IE  +      +    +
Sbjct: 63  PYIVALMTDLARVEPGHKVLEVGTGSGYQAAVMAHL-ARAVYTIEIIEPLGLQARQRLQK 121

Query: 93  H-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
              + +++   D      E   +      ++     +I   L+    +         +  
Sbjct: 122 LGYDNVQVRLGDGYHGWEE---HAPYDAILVTAAASHIPPPLIRQLKAGGRMVIPVGAAF 178

Query: 152 LLFQKEVGER 161
           ++ Q  + E+
Sbjct: 179 MVQQLMLVEK 188


>gi|307295164|ref|ZP_07575003.1| Methyltransferase type 12 [Sphingobium chlorophenolicum L-1]
 gi|306878667|gb|EFN09886.1| Methyltransferase type 12 [Sphingobium chlorophenolicum L-1]
          Length = 242

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI 85
           ++L+D      + +         VIE G G G  T+ LL    G  +++ I+    F   
Sbjct: 76  HYLVDA-----MLDPVDWSRMERVIEYGPGTGIFTRALLDRLPGHARLLAIDTSPAFIGH 130

Query: 86  LKDISSQHPNRLEIIQD--DALKVDFEKFFNISSPIRIIANLPYNIGTR 132
           L+        RL  +    DA+ +D            I++ LP++    
Sbjct: 131 LRGEVRDR--RLTAVTGSADAV-LDIMAAQGWDRADGILSGLPFSTLAP 176


>gi|300704822|ref|YP_003746425.1| cyclopropane-fatty-acyl-phospholipid synthase [Ralstonia
           solanacearum CFBP2957]
 gi|299072486|emb|CBJ43836.1| Cyclopropane-fatty-acyl-phospholipid synthase [Ralstonia
           solanacearum CFBP2957]
          Length = 406

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 30  LLDLNI--LKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKV-IVIEKDQQFFPI 85
           L D  +  +  I        G T+++IG G G L  +     GAR + + + ++Q     
Sbjct: 155 LDDAQVKKIDHILTKIRLQPGQTLLDIGCGWGALVLRAAQKFGARCLGVTLSQNQFDLAR 214

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            +  ++   +R+EI   D                R +      I +  +F  +     P 
Sbjct: 215 ERIRAAGLEDRVEIRLQD---------------YRDLTGTFDRITSVGMFEHVGRKNLPG 259

Query: 146 FWESLTLLF 154
           ++  +  L 
Sbjct: 260 YFRRIHGLL 268


>gi|295099358|emb|CBK88447.1| 16S RNA G1207 methylase RsmC [Eubacterium cylindroides T2-87]
          Length = 196

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 41/89 (46%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
            TV+++G G G +  +L +     + +I+ + +   + K    +H  +  +  DD +K  
Sbjct: 60  ETVLDLGCGIGVIGIVLSSFWKTNMTMIDINARACELAKKNLERHSIQATLKNDDGIKEG 119

Query: 109 FEKFFNISSPIRIIANLPYNIGTRLLFNW 137
             +   ++ PIR    + Y++  + L + 
Sbjct: 120 NFECILLNPPIRTGKKVIYSLFDQCLEHL 148


>gi|291520312|emb|CBK75533.1| Predicted O-methyltransferase [Butyrivibrio fibrisolvens 16/4]
          Length = 250

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEI 99
           +   +G   +++G G G L  +L    G      +E   +   +     + +   ++++I
Sbjct: 41  AKVKEGEVALDLGTGTGILPILLEAKTGGAHFTGLEIQPESAEMANRSVLLNGLEDKIDI 100

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
           I+ D  +    + F   S   + +N PY
Sbjct: 101 IEGDIKEA--AQIFGKGSMNVVTSNPPY 126


>gi|261867127|ref|YP_003255049.1| methyltransferase domain-containing protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412459|gb|ACX81830.1| methyltransferase domain family [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 266

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEI 99
           ++       TV++IG GPG     L     R+V  ++       +L D   +     + +
Sbjct: 53  QTIQVQSHETVLDIGCGPGTFALPLAQQC-RQVYALDYSVGMLDVLADYKQKLQLENVTL 111

Query: 100 IQDDALKVDFEKFFNISSPIRIIAN 124
           I     +   E + ++     ++A+
Sbjct: 112 IH----RSWVEDWADVPQADVVLAS 132


>gi|260655526|ref|ZP_05861014.1| ribosomal protein L11 methyltransferase [Jonquetella anthropi E3_33
           E1]
 gi|260629974|gb|EEX48168.1| ribosomal protein L11 methyltransferase [Jonquetella anthropi E3_33
           E1]
          Length = 295

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL----KDISSQHPNRLEI 99
               G    +IG G   L+   + LGA KV   + D           +D++   P ++ +
Sbjct: 152 AIRPGDVAADIGCGSAILSIAAVKLGASKVYARDLDPSVVDEALHNSRDLNDIPPEKIAV 211

Query: 100 IQDDALK 106
              D LK
Sbjct: 212 EVGDLLK 218


>gi|256963677|ref|ZP_05567848.1| modification methylase HemK [Enterococcus faecalis HIP11704]
 gi|307271623|ref|ZP_07552894.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0855]
 gi|256954173|gb|EEU70805.1| modification methylase HemK [Enterococcus faecalis HIP11704]
 gi|306511501|gb|EFM80500.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0855]
 gi|315170192|gb|EFU14209.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX1342]
          Length = 277

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEKALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|257052325|ref|YP_003130158.1| putative RNA methylase [Halorhabdus utahensis DSM 12940]
 gi|256691088|gb|ACV11425.1| putative RNA methylase [Halorhabdus utahensis DSM 12940]
          Length = 343

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 47/112 (41%), Gaps = 10/112 (8%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--QQFFPILKD 88
           +D  + + +  ++G+  G  V++   G G L   LL        V+  D  ++     ++
Sbjct: 181 MDPALARALGNAAGARPGARVLDPMCGTGGL---LLEASRVGATVVGVDALEKMVRGTRE 237

Query: 89  -ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
            + +   +   + + DA ++     F   +   ++ + PY   T++  + ++
Sbjct: 238 NLVAAGADEFLVCRGDARRLP----FGTDAFDAVVVDAPYGRQTKISADSLA 285


>gi|224584496|ref|YP_002638294.1| transferase [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|224469023|gb|ACN46853.1| putative transferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|326624412|gb|EGE30757.1| Methyltransferase domain containing protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 219

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQH--PNRLE 98
           +   D   +++IG G G L  ML       V    +E D       ++  +    P+R+ 
Sbjct: 14  APVADVKRILDIGTGSGLLALMLAQRTDDNVPIDAVELDAGAAMQAQENVAHSPWPHRIT 73

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYN 128
           +  DD  +    +         II+N PY 
Sbjct: 74  VHTDDIQRWAPRQTVRFD---LIISNPPYY 100


>gi|220910585|ref|YP_002485896.1| precorrin-6B methylase [Cyanothece sp. PCC 7425]
 gi|219867196|gb|ACL47535.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Cyanothece sp. PCC 7425]
          Length = 200

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNL---TQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-N 95
                      + +IGAG G +   T +L   G  ++  IE+D++   ++K    +   +
Sbjct: 36  ISQLRLQPDTILWDIGAGTGTIPVETGLLCPQG--RIYAIERDEEVVTLIKRNCDRFSVD 93

Query: 96  RLEIIQDDA 104
            +EII   A
Sbjct: 94  NVEIIPGSA 102


>gi|197286507|ref|YP_002152379.1| hypothetical protein PMI2678 [Proteus mirabilis HI4320]
 gi|194683994|emb|CAR45274.1| conserved hypothetical protein [Proteus mirabilis HI4320]
          Length = 274

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  ++ K  E     D  T++++G GPG+++  +     +K+I I+       + K  ++
Sbjct: 46  DPYLI-KFREMMDFSDAETLLDVGCGPGSISIHVAD-KFKKIIGIDYSTGMLTVAKRRAA 103

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRI 121
           Q      I   + L   +E  ++   P  I
Sbjct: 104 QAG----IHHANFLHYSWEDNWDALPPCDI 129


>gi|163759444|ref|ZP_02166529.1| putative protein-L-isoaspartate O-methyltransferase [Hoeflea
           phototrophica DFL-43]
 gi|162283041|gb|EDQ33327.1| putative protein-L-isoaspartate O-methyltransferase [Hoeflea
           phototrophica DFL-43]
          Length = 218

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 20/167 (11%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             +++ ++   +    G  V++IG G G L   +    A +VI +++ +    + +   +
Sbjct: 65  SPDLVARVLACAEIEPGHRVLDIGTGSGFL-AAVAARLAERVITVDRYKTLVQLAQQRFA 123

Query: 92  QHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150
                 +   Q D LK          S  RIIA   +             D  P  +  L
Sbjct: 124 HLGLGNVIARQLDGLK----GVSGEGSFDRIIATCSF-------------DGMPRQFVDL 166

Query: 151 TLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFP 197
                  +      +  +    RL+   G R +   +F +    F P
Sbjct: 167 LASGGVMLAPIAGEEGGATRMARLT-KIGSRFEREDLFVVPYTPFIP 212


>gi|145589476|ref|YP_001156073.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047882|gb|ABP34509.1| 23S rRNA m(5)U-1939 methyltransferase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 476

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
           N L++  ++ K            V+++  G GN T  L    A+ V+ IE
Sbjct: 301 NHLMNRALVSKAIRLLEVNPSDRVLDLFCGIGNFTLPLA-RKAKTVLGIE 349


>gi|82701286|ref|YP_410852.1| protein-L-isoaspartate O-methyltransferase [Nitrosospira
           multiformis ATCC 25196]
 gi|123754434|sp|Q2YCR1|PIMT1_NITMU RecName: Full=Protein-L-isoaspartate O-methyltransferase 1;
           AltName: Full=L-isoaspartyl protein carboxyl
           methyltransferase 1; AltName: Full=Protein L-isoaspartyl
           methyltransferase 1; AltName:
           Full=Protein-beta-aspartate methyltransferase 1;
           Short=PIMT 1
 gi|82409351|gb|ABB73460.1| protein-L-isoaspartate O-methyltransferase [Nitrosospira
           multiformis ATCC 25196]
          Length = 236

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             I+ ++ E         V+EIG G G    +L  + A+ V  IE 
Sbjct: 88  PLIVARMTELLKLKKDDKVLEIGTGSGYQAAVLAEI-AKTVYTIEI 132


>gi|148549132|ref|YP_001269234.1| glycosyl transferase family protein [Pseudomonas putida F1]
 gi|148513190|gb|ABQ80050.1| glycosyl transferase, family 2 [Pseudomonas putida F1]
          Length = 1509

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            V+EIGAG G +++ L   GA +++ +E   +   I    +    N
Sbjct: 86  RVLEIGAGCGAISRYLGECGA-ELLCLEGSPRRAAIAASRTRDLDN 130


>gi|328473143|gb|EGF43991.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio
           parahaemolyticus 10329]
          Length = 418

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
           +++ +         VIEIG G G +   +      +V      ++ +   +   +     
Sbjct: 191 ERLCQQLDLQSTDHVIEIGTGWGAMAIYMAEQYGCRVTTTTISEEQYEYARQQIVQRGLA 250

Query: 95  NRLEIIQDD 103
           +R+ ++++D
Sbjct: 251 DRITLLKED 259


>gi|328472044|gb|EGF42921.1| tRNA (adenine-N(6)-)-methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 239

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALK 106
            +++IG G G L  M        K+  ++ +           S  P  +RL +   D L 
Sbjct: 45  HILDIGTGTGLLALMCAQRFPDAKITAVDIETTAVEAASHNFSHSPWHDRLSVKHTDVLS 104

Query: 107 VDFEKFFNISSPIRIIANLPYNIG 130
               + F      RI+ N PY   
Sbjct: 105 FSPPQRFQ-----RIVCNPPYFNT 123


>gi|326330621|ref|ZP_08196925.1| serine/arginine repetitive matrix protein 2 [Nocardioidaceae
          bacterium Broad-1]
 gi|325951462|gb|EGD43498.1| serine/arginine repetitive matrix protein 2 [Nocardioidaceae
          bacterium Broad-1]
          Length = 253

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%)

Query: 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          ++    G  V+++GA  GN T  L  +G  +V+  E + +    ++     + 
Sbjct: 32 TAALEPGDLVVDVGANIGNHTLYLAVVGDLQVVAYEPNPELVAGIRASVEAND 84


>gi|296314313|ref|ZP_06864254.1| ribosomal protein L11 methyltransferase [Neisseria polysaccharea
           ATCC 43768]
 gi|296838974|gb|EFH22912.1| ribosomal protein L11 methyltransferase [Neisseria polysaccharea
           ATCC 43768]
          Length = 295

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
             +G +V++ G G G LT   L LGA   + ++ D+Q     KD + Q+    +    D 
Sbjct: 161 LKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAIRASKDNAEQNNVDAQFFLPDG 220

Query: 105 L 105
           L
Sbjct: 221 L 221


>gi|284800917|ref|YP_003412782.1| hypothetical protein LM5578_0665 [Listeria monocytogenes 08-5578]
 gi|284994103|ref|YP_003415871.1| hypothetical protein LM5923_0664 [Listeria monocytogenes 08-5923]
 gi|284056479|gb|ADB67420.1| hypothetical protein LM5578_0665 [Listeria monocytogenes 08-5578]
 gi|284059570|gb|ADB70509.1| hypothetical protein LM5923_0664 [Listeria monocytogenes 08-5923]
          Length = 197

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 24/52 (46%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          ++       +++++GAG G LT     L    V  ++ D +   +++  + +
Sbjct: 36 QAMPIGKTASILDLGAGTGFLTIPAAKLVDNTVFALDLDAKMLELIESKAKE 87


>gi|269140542|ref|YP_003297243.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
 gi|267986203|gb|ACY86032.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
 gi|304560327|gb|ADM42991.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
           FL6-60]
          Length = 430

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLE 98
            +     DG  ++++   PG  T  +L    +  V+ ++ D+     +++   +     E
Sbjct: 240 VDLLDPQDGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDESRLKRVRENLQRLQQHAE 299

Query: 99  IIQDD 103
           I   D
Sbjct: 300 IRCGD 304


>gi|146342506|ref|YP_001207554.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. ORS278]
 gi|263445831|sp|A4YZL1|RSMH_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146195312|emb|CAL79337.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. ORS278]
          Length = 331

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
                  DG T ++   G G  T+++L     +VI I++D        D+  +   RL +
Sbjct: 17  VAMLAPRDGGTYVDATFGAGGYTRLILATPGTRVIAIDRDSTAIAGGADLVGEANGRLTL 76

Query: 100 IQ 101
           ++
Sbjct: 77  VE 78


>gi|55377601|ref|YP_135451.1| Trk potassium uptake system protein [Haloarcula marismortui ATCC
           43049]
 gi|55230326|gb|AAV45745.1| Trk potassium uptake system protein [Haloarcula marismortui ATCC
           43049]
          Length = 227

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 51  VIEIGAG-PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           ++ +GAG  G+    + T G  +V+VIE+D +      + +S+  + L +I DDA   D 
Sbjct: 3   IVIVGAGDIGSPLLEIATAGGNEVVVIERDAERA----ERASRQYDCL-VINDDATVKDT 57

Query: 110 EKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157
            +         +I+    +  T ++   ++ +   P   S+    +  
Sbjct: 58  LEDAGADRADALISTTDQD-ATNIMVCLLAQELEVPDIVSVVHNPEHM 104


>gi|115350849|ref|YP_772688.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia ambifaria
           AMMD]
 gi|122323830|sp|Q0BHL9|TRMB_BURCM RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|115280837|gb|ABI86354.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia ambifaria
           AMMD]
          Length = 255

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        ++EIG G G  T  +         + +E  +     +LK I  Q    + 
Sbjct: 74  DAVFGRSAPRILEIGFGMGASTAEIAAHRPGDDFLGVEVHEPGVGALLKLIGEQDLPNIR 133

Query: 99  IIQDDALKVDFEKFFNIS 116
           IIQ DA++V        S
Sbjct: 134 IIQHDAVEVLEHMLAPES 151


>gi|326328896|ref|ZP_08195228.1| putative methyltransferase [Nocardioidaceae bacterium Broad-1]
 gi|325953293|gb|EGD45301.1| putative methyltransferase [Nocardioidaceae bacterium Broad-1]
          Length = 286

 Score = 35.6 bits (81), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 40 AESSGSLDGI---TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           ++   L G     V+E+GAG G LT++L+ LG   V   + D     IL +    
Sbjct: 14 VDAVKWLVGDEPVRVLELGAGTGKLTEVLVGLG-HDVFATDPDDAMLDILSEKLPD 68


>gi|297623556|ref|YP_003704990.1| type 12 methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297164736|gb|ADI14447.1| Methyltransferase type 12 [Truepera radiovictrix DSM 17093]
          Length = 212

 Score = 35.6 bits (81), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 39 IAESSGSL-DGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
          I    G L    +V++IG G G L   LL  GA +   ++ 
Sbjct: 37 IVALLGPLAPETSVLDIGCGIGALGVTLLAKGAGEGTFVDL 77


>gi|294054439|ref|YP_003548097.1| Methyltransferase type 11 [Coraliomargarita akajimensis DSM 45221]
 gi|293613772|gb|ADE53927.1| Methyltransferase type 11 [Coraliomargarita akajimensis DSM 45221]
          Length = 244

 Score = 35.6 bits (81), Expect = 7.6,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDD 103
               +++E+G G G +   L  LG + V+  +  +      + ++   ++P  L +    
Sbjct: 41  RRNQSLLELGCGTGRIAFGLHELGYQHVMATDYSKAMIRRARHMAEVLEYPVHLRVEDAT 100

Query: 104 ALKVDFEKF----FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFW--ESLTLLFQK- 156
           AL  D   F    F  +  ++I          R +   +    W  F   +  +  +Q+ 
Sbjct: 101 ALSFDDAAFDGAIFGFNGLMQIPKQAQRLQALREIHRVLKRGGWFVFTSHDRASARYQQF 160

Query: 157 --EVGERITAQKNSPH 170
             E   R  A + S  
Sbjct: 161 WSEEAGRWQADQQSKD 176


>gi|292489102|ref|YP_003531989.1| hypothetical protein EAMY_2634 [Erwinia amylovora CFBP1430]
 gi|292900224|ref|YP_003539593.1| methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291200072|emb|CBJ47198.1| putative methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291554536|emb|CBA22118.1| Uncharacterized protein yfiC [Erwinia amylovora CFBP1430]
 gi|312173259|emb|CBX81514.1| Uncharacterized protein yfiC [Erwinia amylovora ATCC BAA-2158]
          Length = 245

 Score = 35.6 bits (81), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKD--ISSQHPNRLE 98
           +   +    ++IG+G G +  ML    A  V    +E D+      ++   +S  P+++ 
Sbjct: 40  APVANVQRALDIGSGSGLIALMLAQRTADPVQIDAVELDEAAALQAQENVAASPWPDKVR 99

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           + Q D ++              I++N PY
Sbjct: 100 VQQADIVEWTQRC---EHRYSLIVSNPPY 125


>gi|302885766|ref|XP_003041774.1| hypothetical protein NECHADRAFT_72858 [Nectria haematococca mpVI
            77-13-4]
 gi|256722680|gb|EEU36061.1| hypothetical protein NECHADRAFT_72858 [Nectria haematococca mpVI
            77-13-4]
          Length = 2520

 Score = 35.6 bits (81), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 43   SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--------IVIEKDQQFFPILKDISSQHP 94
            + S   + ++E+GAG G  T+M+L   AR             +    FFP  ++  S  P
Sbjct: 1389 AHSRPDLRILEVGAGTGGTTEMILRNLARPDGLPAYSVYTFSDISAGFFPQARERFSYAP 1448

Query: 95   NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
            N ++    D  K  FE+ F  +    +I        T  L   +S 
Sbjct: 1449 N-MDYRSFDISKDPFEQGFKAN-TYDVILAPNVIHATESLNKTLSN 1492


>gi|290892832|ref|ZP_06555823.1| methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|290557644|gb|EFD91167.1| methyltransferase [Listeria monocytogenes FSL J2-071]
          Length = 197

 Score = 35.6 bits (81), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 24/52 (46%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          ++       +++++GAG G LT     L    V  ++ D +   +++  + +
Sbjct: 36 QAMPIGKTASILDLGAGTGFLTIPAAKLVDNTVFALDLDAKMLELIESKAKE 87


>gi|321441991|gb|ADW85410.1| arg methyltransferase [Emmelina monodactyla]
          Length = 244

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              G TV++IG G G L+      GA KVI IE
Sbjct: 19 HLFKGKTVLDIGCGTGILSMFAAKAGAAKVIAIE 52


>gi|321248444|ref|XP_003191129.1| hypothetical protein CGB_A0620C [Cryptococcus gattii WM276]
 gi|317457596|gb|ADV19342.1| Hypothetical Protein CGB_A0620C [Cryptococcus gattii WM276]
          Length = 510

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 22 KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
          +K  G+  L + ++      + G  +G  ++E  AG G LT+ L+T G
Sbjct: 32 RKAPGRVLLANPSLGDDFVRALGIREGEVIVEGYAGVGGLTRSLVTGG 79


>gi|310658026|ref|YP_003935747.1| hypothetical protein CLOST_0716 [Clostridium sticklandii DSM 519]
 gi|308824804|emb|CBH20842.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 197

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           +     +  T+++IGAG G  T  +       V  ++ D +   ++ + +
Sbjct: 36 IDEMPIHENHTLLDIGAGSGFFTIPMAKKTKETVYALDFDSRMLNVISEKA 86


>gi|307325344|ref|ZP_07604547.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
 gi|306889148|gb|EFN20131.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
          Length = 392

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 41  ESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           ++     G+ V+++G G G     +   L A+ V  IE D+      ++         E+
Sbjct: 112 QALEVDAGMKVLDVGTGTGETAGALAYRLDAQNVTTIEVDRAVSARARERLCAAGLHPEV 171

Query: 100 IQDD 103
           +  D
Sbjct: 172 VVGD 175


>gi|293556577|ref|ZP_06675145.1| 16S RNA methylase [Enterococcus faecium E1039]
 gi|293571203|ref|ZP_06682238.1| methyltransferase small domain superfamily [Enterococcus faecium
           E980]
 gi|291601253|gb|EFF31537.1| 16S RNA methylase [Enterococcus faecium E1039]
 gi|291608714|gb|EFF38001.1| methyltransferase small domain superfamily [Enterococcus faecium
           E980]
          Length = 210

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              D   ++++G G G +   L     R V +++ +++       ++  +  R +I Q D
Sbjct: 66  ELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVS----LAQGNAKRNQIEQVD 121

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQKEVGERI 162
             + +  +  +  +   I++N P   G +++   ++          +LT++ QK+ G   
Sbjct: 122 IHQSNIYEVLHEETYAAIVSNPPIRAGKKVVHEILTGAYPRLKQGGTLTIVIQKKQGAPS 181

Query: 163 TAQKNSPHYG 172
             +K    +G
Sbjct: 182 AQKKMEETFG 191


>gi|284163641|ref|YP_003401920.1| protein-L-isoaspartate O-methyltransferase [Haloterrigena
           turkmenica DSM 5511]
 gi|284013296|gb|ADB59247.1| protein-L-isoaspartate O-methyltransferase [Haloterrigena
           turkmenica DSM 5511]
          Length = 221

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-P 94
           +A+  G   G  V+EIG G G    +T  L  +G   V  +E   +     ++  ++   
Sbjct: 80  MADLLGLDSGDEVLEIGTGCGYHAAVTAEL--VGDEAVATVEYSAELADRAREQLAELGY 137

Query: 95  NRLEIIQDDALKVDFE 110
           + +++   D  +   E
Sbjct: 138 DGVDVRTGDGREGWPE 153


>gi|257893152|ref|ZP_05672805.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,408]
 gi|257829531|gb|EEV56138.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,408]
          Length = 201

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              D   ++++G G G +   L     R V +++ +++       ++  +  R +I Q D
Sbjct: 57  ELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVS----LAQGNAKRNQIEQVD 112

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQKEVGERI 162
             + +  +  +  +   I++N P   G +++   ++          +LT++ QK+ G   
Sbjct: 113 IHQSNIYEVLHEETYAAIVSNPPIRAGKKVVHEILTGAYPRLKQGGTLTIVIQKKQGAPS 172

Query: 163 TAQKNSPHYG 172
             +K    +G
Sbjct: 173 AQKKMEETFG 182


>gi|257888043|ref|ZP_05667696.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,141,733]
 gi|257896338|ref|ZP_05675991.1| rRNA small subunit methyltransferase C [Enterococcus faecium Com12]
 gi|257899313|ref|ZP_05678966.1| rRNA small subunit methyltransferase C [Enterococcus faecium Com15]
 gi|257824097|gb|EEV51029.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,141,733]
 gi|257832903|gb|EEV59324.1| rRNA small subunit methyltransferase C [Enterococcus faecium Com12]
 gi|257837225|gb|EEV62299.1| rRNA small subunit methyltransferase C [Enterococcus faecium Com15]
          Length = 201

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              D   ++++G G G +   L     R V +++ +++       ++  +  R +I Q D
Sbjct: 57  ELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVS----LAQGNAKRNQIEQVD 112

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQKEVGERI 162
             + +  +  +  +   I++N P   G +++   ++          +LT++ QK+ G   
Sbjct: 113 IHQSNIYEVLHEETYAAIVSNPPIRAGKKVVHEILTGAYPRLKQGGTLTIVIQKKQGAPS 172

Query: 163 TAQKNSPHYG 172
             +K    +G
Sbjct: 173 AQKKMEETFG 182


>gi|255324146|ref|ZP_05365270.1| tRNA methyltransferase [Corynebacterium tuberculostearicum SK141]
 gi|255298847|gb|EET78140.1| tRNA methyltransferase [Corynebacterium tuberculostearicum SK141]
          Length = 258

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKDISSQHPNRLEIIQDDALKV 107
           T++EIG+G G  T  +    A   +I +E        +L  I  +  + + +I+ D ++V
Sbjct: 85  TIVEIGSGTGTSTAAMAPKEADTNIIAVELYKPGLAKLLGQIEREGIDNIRMIRGDGIEV 144

Query: 108 DFEKFFNIS 116
               F   S
Sbjct: 145 MVRMFAPES 153


>gi|257388443|ref|YP_003178216.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257170750|gb|ACV48509.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 210

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +   +       V+++G G G +   L    A +V+  +  +      +  +++
Sbjct: 32 ADLVVRHAAPAADDVVLDLGTGTGAIALPLADAAA-EVVGRDISEGMLEQARTKATE 87


>gi|227550698|ref|ZP_03980747.1| methyltransferase [Enterococcus faecium TX1330]
 gi|293379424|ref|ZP_06625568.1| methyltransferase small domain protein [Enterococcus faecium PC4.1]
 gi|227180159|gb|EEI61131.1| methyltransferase [Enterococcus faecium TX1330]
 gi|292641947|gb|EFF60113.1| methyltransferase small domain protein [Enterococcus faecium PC4.1]
          Length = 210

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              D   ++++G G G +   L     R V +++ +++       ++  +  R +I Q D
Sbjct: 66  ELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVS----LAQGNAKRNQIEQVD 121

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD-TWPPFWESLTLLFQKEVGERI 162
             + +  +  +  +   I++N P   G +++   ++          +LT++ QK+ G   
Sbjct: 122 IHQSNIYEVLHEETYAAIVSNPPIRAGKKVVHEILTGAYPRLKQGGTLTIVIQKKQGAPS 181

Query: 163 TAQKNSPHYG 172
             +K    +G
Sbjct: 182 AQKKMEETFG 191


>gi|222479392|ref|YP_002565629.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
 gi|222452294|gb|ACM56559.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
          Length = 217

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 44/140 (31%), Gaps = 18/140 (12%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE 98
            + +       V+++GAG G +   L    A +V+  +  +      +  + +     +E
Sbjct: 35  VDYADPDSDDVVLDLGAGTGAIALALAPH-AERVLARDISEGMMEEGRRKADERGLANVE 93

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
               +      E   +   PI I+        +    + ++ D        +     + +
Sbjct: 94  FAYGEF----REPEVDSDQPIDIV-------TSNFALHHLADDEKREAIREMAATGARRI 142

Query: 159 GERITA-----QKNSPHYGR 173
                A       ++P YG 
Sbjct: 143 VLGDVAFFEEPDPDAPFYGP 162


>gi|156974107|ref|YP_001445014.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156525701|gb|ABU70787.1| hypothetical protein VIBHAR_01818 [Vibrio harveyi ATCC BAA-1116]
          Length = 418

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP 94
            ++ +         VIEIG G G +   +      +V    I ++Q  +   K       
Sbjct: 191 DRLCQQLELKASDHVIEIGTGWGAMAIYMAEQYGCQVTTTTISEEQHAYAEQKIKERGLE 250

Query: 95  NRLEIIQDDA--LKVDFEKFFNIS 116
            ++ ++++D   LK  ++K  +I 
Sbjct: 251 GKVTLLKEDYRNLKGTYDKLVSIE 274


>gi|45185015|ref|NP_982733.1| AAR190Wp [Ashbya gossypii ATCC 10895]
 gi|44980636|gb|AAS50557.1| AAR190Wp [Ashbya gossypii ATCC 10895]
          Length = 346

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            I ++     G  V+++G G G L+      GA+ VI ++ 
Sbjct: 46 NAIVQNRDLFKGKVVLDVGCGTGILSMFAARNGAKHVIGVDM 87


>gi|16081906|ref|NP_394311.1| hypothetical protein Ta0852 [Thermoplasma acidophilum DSM 1728]
 gi|10640129|emb|CAC11981.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 255

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNR 96
           I    G   G+ ++E+G G GN++  +L    G   + V+E+D+     LK         
Sbjct: 82  IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDED---NLKKAMDNLSEF 138

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLP 126
            +I      + D   F +      +IA++P
Sbjct: 139 YDIGNVRTSRSDIADFISDQMYDAVIADIP 168


>gi|119775169|ref|YP_927909.1| methyltransferase [Shewanella amazonensis SB2B]
 gi|119767669|gb|ABM00240.1| conserved hypothetical methyltransferase [Shewanella amazonensis
           SB2B]
          Length = 202

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 2/126 (1%)

Query: 49  ITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106
              +EIG G G  +  +   L AR+VI ++ D++   +       +            + 
Sbjct: 40  ERALEIGCGSGNGMEFLKHRLNARQVIAMDLDEEMLALSAKRWQGNDWAFFTEANACQMP 99

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
            D   F  +           +      +   +    +  +W+         +  R+    
Sbjct: 100 FDETAFDLVVEFAVFHHVPDWQGALAEVARVLKPGGYFLYWDLYRFAICNPISRRLFEHP 159

Query: 167 NSPHYG 172
               + 
Sbjct: 160 MENRFS 165


>gi|313896637|ref|ZP_07830185.1| ribosomal protein L11 methyltransferase [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312974554|gb|EFR40021.1| ribosomal protein L11 methyltransferase [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 317

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            + G  V ++G G G L      LGA +V+ ++ D     + +    Q+  R  ++   A
Sbjct: 171 VVPGTRVYDVGCGSGILAIAAAKLGAGEVLAMDCDPVAVRVAEQNIVQNDVRGHVV---A 227

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
           ++ D         P  +I     NI   ++   +  
Sbjct: 228 MESDLLAICRGMEPAGLIMA---NIIAYVVIRLLDG 260


>gi|312879446|ref|ZP_07739246.1| Methyltransferase type 12 [Aminomonas paucivorans DSM 12260]
 gi|310782737|gb|EFQ23135.1| Methyltransferase type 12 [Aminomonas paucivorans DSM 12260]
          Length = 230

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                  V+E+GAG G + + L    A  ++ I+  +    + ++  +  P R  +   D
Sbjct: 40  DLTGTERVLEVGAGYGRILRELAPHAA-SLVGIDISEDSVVLGREYLADCP-RCRMETMD 97

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             ++ +E+ F++   ++   +      + L+   + A
Sbjct: 98  VYRLPYEEAFDVVLCLQNGLSAMRGQASDLVARCLRA 134


>gi|304403936|ref|ZP_07385598.1| ribosomal protein L11 methyltransferase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346914|gb|EFM12746.1| ribosomal protein L11 methyltransferase [Paenibacillus
           curdlanolyticus YK9]
          Length = 332

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
              G  VI++G G G L    + LGAR V+ ++ D       K+    +    ++++   
Sbjct: 172 IHGGEEVIDVGTGSGILAIGAIKLGARAVLAVDLDPVAVSSAKENAHLNGLSEQIDVRLS 231

Query: 103 DAL 105
           D L
Sbjct: 232 DLL 234


>gi|294507321|ref|YP_003571379.1| SAM-dependent methyltransferase [Salinibacter ruber M8]
 gi|294343649|emb|CBH24427.1| Predicted SAM-dependent methyltransferase [Salinibacter ruber M8]
          Length = 212

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 30/75 (40%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE+        V+E+GAG G     L      +V  ++  +      ++ +     RL+ 
Sbjct: 35  AEAHRLPPESEVVEVGAGEGRTAAWLAREHGHRVTAVDFSETALKTAQERAEAEHLRLDT 94

Query: 100 IQDDALKVDFEKFFN 114
           ++ D      ++ ++
Sbjct: 95  VRADVRTWRPDRQWD 109


>gi|282163644|ref|YP_003356029.1| hypothetical protein MCP_0974 [Methanocella paludicola SANAE]
 gi|282155958|dbj|BAI61046.1| hypothetical protein [Methanocella paludicola SANAE]
          Length = 221

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN 95
               G + G  V+E G G G +++ +     R  + +++  + +   +K + +++PN
Sbjct: 60  VADMGLMGGENVLEFGPGSGKMSKYIAGSLPRGSLTIVDLSRVWIGEVKKMMAKYPN 116


>gi|242241524|ref|ZP_04795969.1| HemK family methyltransferase [Staphylococcus epidermidis W23144]
 gi|242235067|gb|EES37378.1| HemK family methyltransferase [Staphylococcus epidermidis W23144]
          Length = 278

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 46  LDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
               T+ +IG G G   +T  LL      VI  +  +    + K  +S +   ++ ++ +
Sbjct: 108 KKTDTIADIGTGSGAIAITLKLL-QPELNVIATDLYEDALSVAKQNASHYHQNIQFLRGN 166

Query: 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
           ALK   EK   +     +I+N PY   + ++
Sbjct: 167 ALKPLIEKDIKLDG---LISNPPYIGHSEII 194


>gi|311740401|ref|ZP_07714230.1| tRNA (guanine-N(7)-)-methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304585|gb|EFQ80659.1| tRNA (guanine-N(7)-)-methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 258

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 50  TVIEIGAGPGNLTQMLLTLGAR-KVIVIEK-DQQFFPILKDISSQHPNRLEIIQDDALKV 107
           T++EIG+G G  T  +    A   +I +E        +L  I  +  + + +I+ D ++V
Sbjct: 85  TIVEIGSGTGTSTAAMAPKEADTNIIAVELYKPGLAKLLGQIEREGIDNIRMIRGDGIEV 144

Query: 108 DFEKFFNIS 116
               F   S
Sbjct: 145 MVRMFAPES 153


>gi|254824090|ref|ZP_05229091.1| methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|255520381|ref|ZP_05387618.1| methyltransferase, UbiE/COQ5 family protein [Listeria
          monocytogenes FSL J1-175]
 gi|293593321|gb|EFG01082.1| methyltransferase [Listeria monocytogenes FSL J1-194]
          Length = 197

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 24/52 (46%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          ++       +++++GAG G LT     L    V  ++ D +   +++  + +
Sbjct: 36 QAMPIGKTASILDLGAGTGFLTIPAAKLVDNTVFALDLDAKMLELIESKAKE 87


>gi|220913886|ref|YP_002489195.1| TrkA-N domain protein [Arthrobacter chlorophenolicus A6]
 gi|219860764|gb|ACL41106.1| TrkA-N domain protein [Arthrobacter chlorophenolicus A6]
          Length = 228

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 44  GSLDGITVIEIGAG-PGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                  V+ IG G  G+ T   L    R+V+ IE+D+             P    +++ 
Sbjct: 10  RPAHNAPVLVIGLGRFGSSTAEQLVKQGREVLAIERDRSLV------QKWAPLLTHVVEA 63

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
           DA  +D  +          +  +  +I + +L 
Sbjct: 64  DATNIDALRQLGAQEFSSAVVGVGTSIESSVLI 96


>gi|254391740|ref|ZP_05006936.1| methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
 gi|197705423|gb|EDY51235.1| methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
          Length = 238

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 1/127 (0%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A       G  V+++  GPG     L   G  +V  ++         +    +    +E+
Sbjct: 25  ARLLDFPRGSRVLDLCCGPGLFLVPLARRG-HRVTGVDLSPAMLERARAACERAGAEVEL 83

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159
           I+ D L       +++   +        +    L     +  +  P    L  +  KEV 
Sbjct: 84  IRADMLDYTAPGAYDVILNVFTSFGYFADPADNLRVLRNARRSLAPGGTLLVDVMGKEVL 143

Query: 160 ERITAQK 166
                + 
Sbjct: 144 AGWIGRP 150


>gi|194705956|gb|ACF87062.1| unknown [Zea mays]
 gi|195638364|gb|ACG38650.1| S-adenosylmethionine-dependent methyltransferase [Zea mays]
          Length = 211

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 29/68 (42%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            S   + G  V + G G G L      L A  V+ I+ D Q   + ++ ++     ++++
Sbjct: 42  NSFNDITGKVVADFGCGCGTLAVASALLDAEHVLGIDIDPQSLELAQENAADLELDIDLV 101

Query: 101 QDDALKVD 108
             D   ++
Sbjct: 102 WSDIKNLN 109


>gi|170291064|ref|YP_001737880.1| DNA topoisomerase VI subunit B [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170175144|gb|ACB08197.1| DNA topoisomerase VI, B subunit [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 512

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 17/109 (15%)

Query: 181 RTKAT-MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239
                  ++          P+    + H      P    LE L+++       R ++L  
Sbjct: 207 FMDPEGHLYIFPRSTEKIPPRPKEALFH------PKGVDLELLQRLLS---STRTRSLES 257

Query: 240 SLKRLG-------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
            L              +L  AG+  + R  +L  ED  R+   L   ++
Sbjct: 258 FLMTHFQRVGKKTASEVLKIAGLPPDKRPSDLKDEDIRRLYEALRSYKE 306


>gi|159044860|ref|YP_001533654.1| cyclopropane-fatty-acyl-phospholipid synthase [Dinoroseobacter
           shibae DFL 12]
 gi|157912620|gb|ABV94053.1| cyclopropane-fatty-acyl-phospholipid synthase [Dinoroseobacter
           shibae DFL 12]
          Length = 414

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
             + +  G+  G  V+EIG G G   +        KV  +  
Sbjct: 187 ASMVDEMGAQPGDHVLEIGCGWGGFAEYAAKERGLKVTGLTI 228


>gi|58264218|ref|XP_569265.1| hypothetical protein [Cryptococcus neoformans var. neoformans
          JEC21]
 gi|57223915|gb|AAW41958.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21]
          Length = 510

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
          L + ++      + G  +G  ++E  AG G LT+ L+T G
Sbjct: 40 LANPSLGDDFVRALGIREGEIIVEGYAGMGGLTRSLVTGG 79


>gi|329770284|ref|ZP_08261672.1| hypothetical protein HMPREF0433_01436 [Gemella sanguinis M325]
 gi|328836842|gb|EGF86490.1| hypothetical protein HMPREF0433_01436 [Gemella sanguinis M325]
          Length = 251

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 14  LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73
           L   K+ P    G NFLL           +   +G  V+E+    G     L     + +
Sbjct: 13  LGKTKLRPGGVRGTNFLL---------AHAAFKEGDVVLEVACNKGVNLIELAKKYPKTI 63

Query: 74  IV-IEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEK 111
            V I+ D++      +  +++    ++ ++ DA ++ F  
Sbjct: 64  FVGIDVDKEAIQEANEELAKYQYQNIKFLKADAFRMKFPD 103


>gi|327314563|ref|YP_004330000.1| 50S ribosomal protein L11 methyltransferase [Prevotella denticola
           F0289]
 gi|326944350|gb|AEA20235.1| ribosomal protein L11 methyltransferase [Prevotella denticola
           F0289]
          Length = 288

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 35  ILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + I        L G   ++ G G G L+ +    GAR+ +  + D+         +++
Sbjct: 137 TTQMIVSLLLDQELKGKRTLDCGCGTGILSIVAARCGAREAVCYDIDEWSV-----RNAR 191

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII-ANLPYNI 129
           H   L  ++ D L+ D     +++    +I AN+  NI
Sbjct: 192 HNAELNGVEIDVLEGDKSVLSHVNGVFDVIMANINRNI 229


>gi|321441969|gb|ADW85399.1| arg methyltransferase [Archiearis parthenias]
          Length = 244

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G  V++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKVVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLSDVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|315123474|ref|YP_004065480.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Pseudoalteromonas sp. SM9913]
 gi|315017234|gb|ADT70571.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Pseudoalteromonas sp. SM9913]
          Length = 420

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           L++I E      G  VIEIG G G       T     V       +    + +   +   
Sbjct: 179 LQRICEQVELQQGDIVIEIGTGWGAFAIYAATHYDCHVTTTTISDEQHDYVANKIKELGL 238

Query: 94  PNRLEIIQDD 103
            N++ +++ D
Sbjct: 239 ENKITLLKQD 248


>gi|302343726|ref|YP_003808255.1| ribosomal protein L11 methyltransferase [Desulfarculus baarsii DSM
           2075]
 gi|301640339|gb|ADK85661.1| ribosomal protein L11 methyltransferase [Desulfarculus baarsii DSM
           2075]
          Length = 318

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           G  V+++G G G L      LG  KV+ I+ D +  
Sbjct: 185 GSPVLDVGCGSGILALAAAKLGVPKVVAIDIDPEAV 220


>gi|270264028|ref|ZP_06192296.1| protein-L-isoaspartate O-methyltransferase [Serratia odorifera
           4Rx13]
 gi|270042221|gb|EFA15317.1| protein-L-isoaspartate O-methyltransferase [Serratia odorifera
           4Rx13]
          Length = 203

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 56  PYMVARMTELLNLTPTSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQAKR 110

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I   L+   
Sbjct: 111 RLKQLDLHNVSTRHGDGWQGWASRGPFDAIIVTAAPPEIPPALMEQL 157


>gi|167040136|ref|YP_001663121.1| O-methyltransferase family protein [Thermoanaerobacter sp. X514]
 gi|256752534|ref|ZP_05493390.1| O-methyltransferase family 3 [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914220|ref|ZP_07131536.1| O-methyltransferase family 3 [Thermoanaerobacter sp. X561]
 gi|307724545|ref|YP_003904296.1| O-methyltransferase family 3 [Thermoanaerobacter sp. X513]
 gi|166854376|gb|ABY92785.1| O-methyltransferase, family 3 [Thermoanaerobacter sp. X514]
 gi|256748600|gb|EEU61648.1| O-methyltransferase family 3 [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889155|gb|EFK84301.1| O-methyltransferase family 3 [Thermoanaerobacter sp. X561]
 gi|307581606|gb|ADN55005.1| O-methyltransferase family 3 [Thermoanaerobacter sp. X513]
          Length = 212

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS--SQHPN 95
           I +         ++EIG   G  T ++    +   V+ IE+D     I K+    ++  +
Sbjct: 48  IVK---LKKPNNILEIGTAIGYSTIIMAKAYSEVSVVTIERDINLAEIAKENFKKAKVED 104

Query: 96  RLEIIQDDALKV 107
           R+E+I  +A +V
Sbjct: 105 RIELICGEAQQV 116


>gi|42524038|ref|NP_969418.1| L-isoaspartyl protein carboxyl methyltransferase [Bdellovibrio
           bacteriovorus HD100]
 gi|39576247|emb|CAE80412.1| L-isoaspartyl protein carboxyl methyltransferase [Bdellovibrio
           bacteriovorus HD100]
          Length = 240

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 8/128 (6%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPN 95
           +I +      G  V E+G G G  T M+  +   A KV+ +E   +     + I  +   
Sbjct: 85  RILDLLKLGPGQKVFELGTGSGWNTAMMAEIVGAAGKVVSVEVIAELAERAQKILRERNL 144

Query: 96  RLEII------QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
              ++      + DA    +++    +        +   +       ++  +   P    
Sbjct: 145 PQVLVKAGDGFEGDAANAPYDRVIFTAGSSEFPQKVFEQLKESGWMVFVRKNRGSPDMLE 204

Query: 150 LTLLFQKE 157
           L    Q E
Sbjct: 205 LIHKVQSE 212


>gi|167037474|ref|YP_001665052.1| O-methyltransferase family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115888|ref|YP_004186047.1| O-methyltransferase family 3 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856308|gb|ABY94716.1| O-methyltransferase, family 3 [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928979|gb|ADV79664.1| O-methyltransferase family 3 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 212

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS--SQHPN 95
           I +         ++EIG   G  T ++    +   V+ IE+D     I K+    ++  +
Sbjct: 48  IVK---LKKPNNILEIGTAIGYSTIIMAKAYSEVSVVTIERDINLAEIAKENFKKAKVED 104

Query: 96  RLEIIQDDALKV 107
           R+E+I  +A +V
Sbjct: 105 RIELICGEAQQV 116


>gi|116750987|ref|YP_847674.1| type 11 methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116700051|gb|ABK19239.1| Methyltransferase type 11 [Syntrophobacter fumaroxidans MPOB]
          Length = 208

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
            ++SG   G TV+++G G G L   ++  G  ++   +        +K+       R++ 
Sbjct: 44  VKASGLARGETVLDVGTGTGILIGFIVKYGPSEIHACDLAGNMLRAVKEKFP----RVKT 99

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI 129
              D   +      + S  +  I     NI
Sbjct: 100 HLCDVRDL---PLPDDSLDVVFINACFSNI 126


>gi|326386081|ref|ZP_08207705.1| hypothetical protein Y88_1973 [Novosphingobium nitrogenifigens
          DSM 19370]
 gi|326209306|gb|EGD60099.1| hypothetical protein Y88_1973 [Novosphingobium nitrogenifigens
          DSM 19370]
          Length = 537

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 54 IGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
          IGAGP  LT   LL+    KV +IEKD  +   +         R +I
Sbjct: 24 IGAGPSGLTAGYLLSRQGYKVAIIEKDPHYVGGISRTVEHEGYRFDI 70


>gi|303243742|ref|ZP_07330083.1| ribosomal L11 methyltransferase [Methanothermococcus okinawensis
           IH1]
 gi|302485984|gb|EFL48907.1| ribosomal L11 methyltransferase [Methanothermococcus okinawensis
           IH1]
          Length = 270

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDD 103
                 V ++G G G L  M+ +   + V  +E D   +   K+ I       + +I+ D
Sbjct: 32  VKPNDVVYDLGTGSGIL-AMIASQITKNVYAVELDPITYAYAKENIKINKCENINLIEAD 90

Query: 104 ALKVDFEKFFNI 115
           A + +F++  ++
Sbjct: 91  ASEYNFKEPADV 102


>gi|303233259|ref|ZP_07319931.1| NOL1/NOP2/sun family protein [Atopobium vaginae PB189-T1-4]
 gi|302480649|gb|EFL43737.1| NOL1/NOP2/sun family protein [Atopobium vaginae PB189-T1-4]
          Length = 557

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 14/80 (17%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLT------QMLLTLGARKVIVIEKDQQFFPILKDI 89
            + I           V+EIGAG G  T        +L        V +        L+ +
Sbjct: 310 AQLICAVIAYTPHEHVLEIGAGNGTKTLVSEYIAHVLKKPPLLHAVCDI---VPAKLRTL 366

Query: 90  SSQH-----PNRLEIIQDDA 104
            ++      P  LEI+  DA
Sbjct: 367 QARFTKAAIPTTLEIVHADA 386


>gi|258546180|ref|ZP_05706414.1| methyltransferase, S-adenosyl-L-methionine (SAM)-MTase protein
           [Cardiobacterium hominis ATCC 15826]
 gi|258518605|gb|EEV87464.1| methyltransferase, S-adenosyl-L-methionine (SAM)-MTase protein
           [Cardiobacterium hominis ATCC 15826]
          Length = 255

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
                G+  +++G G G  T +L    A  ++  ++         +     H   +++  
Sbjct: 29  LALPPGLRWLDVGCGSGAFTALLAERAAPTELHGLDCSPDMLAYAQSRLPAH---VQLHT 85

Query: 102 DD--ALKVDFEKFFNISSPIRII 122
            D  AL      F     P+ I+
Sbjct: 86  GDATALPFPAACFDAAVMPLVIV 108


>gi|289208465|ref|YP_003460531.1| protein-L-isoaspartate O-methyltransferase [Thioalkalivibrio sp.
           K90mix]
 gi|288944096|gb|ADC71795.1| protein-L-isoaspartate O-methyltransferase [Thioalkalivibrio sp.
           K90mix]
          Length = 221

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 22  KKYMGQNFLLDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           ++ + Q F     I+ ++ E+        TV+EIG G G    +L  L   +V  +E+ Q
Sbjct: 65  RQTISQPF-----IVARMTEALLEGGPVSTVLEIGTGSGYQAAVLAKL-VDRVYSVERIQ 118

Query: 81  QFFPILKDISSQHP-NRLEIIQDDALKVDFEKF-FNISSPIRIIANLPYNIGTRLLFN 136
                 +++ S+   N + +   D  +   E+  F+         N+P  + T+L  N
Sbjct: 119 ALSRNARELLSRLGINNVNLRHGDGAEGWPERAPFDGIILTAAPHNVPETLLTQLALN 176


>gi|195011711|ref|XP_001983281.1| GH15816 [Drosophila grimshawi]
 gi|193896763|gb|EDV95629.1| GH15816 [Drosophila grimshawi]
          Length = 243

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 51  VIEIGAGPGNLTQMLLT------LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           V+++G   G+ TQ+L +           V+ ++ D++      +++++ P ++    DD 
Sbjct: 59  VLDVGCNCGDFTQLLQSFLEEQLQRPVHVLGVDIDERLIER-AELNNKCPGKISYFCDDI 117

Query: 105 L-----KVDFEKFFNISSPIRIIANLPYNIG 130
           L      V   ++       +  A   Y+I 
Sbjct: 118 LNASTFDVTVLQYLQQHRRNKFDAICCYSIT 148


>gi|241204300|ref|YP_002975396.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858190|gb|ACS55857.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 662

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
               + VIE+ AG G ++  L   G   + + E D+     L+ ++    N   +++ D 
Sbjct: 292 PTQKLNVIELCAGAGGMSLGLEDAGFHPLALFEFDKHAAATLR-LNRPLWN---VVEGDI 347

Query: 105 LKVDFEKFFNIS 116
            +VDF  + +  
Sbjct: 348 RQVDFTPYRSAG 359


>gi|153828707|ref|ZP_01981374.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio cholerae
           623-39]
 gi|148875860|gb|EDL73995.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio cholerae
           623-39]
          Length = 432

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
           +++ E         V+EIG G G +   +      KV      ++ +   +    +    
Sbjct: 205 QRLCEQLQLKPTDHVLEIGTGWGAMAIYIAQHYGCKVTTTTISEEQYAYAQQKITALGLN 264

Query: 95  NRLEIIQDD 103
           N++ +++ D
Sbjct: 265 NQITLLKQD 273


>gi|157164175|ref|YP_001467766.1| protein-L-isoaspartate O-methyltransferase [Campylobacter concisus
           13826]
 gi|112800303|gb|EAT97647.1| protein-L-isoaspartate O-methyltransferase [Campylobacter concisus
           13826]
          Length = 216

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 17  YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           YK+  +  +G  ++     + K+  +    +   ++EIG G G     +L+  A ++  +
Sbjct: 52  YKLDAQPILGNQWISSPLTVAKMTMALECENVDNILEIGCGSGY-QAAILSKLAHRIFSV 110

Query: 77  EKDQQFFPILKDISSQHPNR-LEIIQDD 103
           E+ ++     K        + + +  DD
Sbjct: 111 ERIEKLAMEAKKRFEALKIKNVHVRYDD 138


>gi|27379183|ref|NP_770712.1| replicative DNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27352334|dbj|BAC49337.1| replicative DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 418

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 30  LLDLNILKK--IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           L D  + KK  IA       G  V++IG+G G L   L       V  I
Sbjct: 154 LDDAQLAKKRHIAAKLRVKGGERVLDIGSGWGGLGLYLAETAGADVTGI 202


>gi|116205527|ref|XP_001228574.1| hypothetical protein CHGG_10647 [Chaetomium globosum CBS 148.51]
 gi|88176775|gb|EAQ84243.1| hypothetical protein CHGG_10647 [Chaetomium globosum CBS 148.51]
          Length = 2539

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 33   LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
              +   IA  + +     ++EIGAG G+ T+  + +
Sbjct: 1540 PQVANIIASLAHANPHARILEIGAGTGSATRGAMRV 1575


>gi|134107746|ref|XP_777484.1| hypothetical protein CNBB0580 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|50260176|gb|EAL22837.1| hypothetical protein CNBB0580 [Cryptococcus neoformans var.
          neoformans B-3501A]
          Length = 510

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
          L + ++      + G  +G  ++E  AG G LT+ L+T G
Sbjct: 40 LANPSLGDDFVRALGIREGEIIVEGYAGMGGLTRSLVTGG 79


>gi|332830505|gb|EGK03131.1| hypothetical protein HMPREF9455_00764 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 169

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
                 TV++ G G G +T  +    A +V  ++ 
Sbjct: 57 IHIKPDDTVLDFGCGTGAITLRIA-RNANEVYGVDI 91


>gi|330502045|ref|YP_004378914.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas
           mendocina NK-01]
 gi|328916331|gb|AEB57162.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas
           mendocina NK-01]
          Length = 424

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           LN L++I +         ++EIG G G++     +    +V      ++     +    +
Sbjct: 180 LNKLERICQKLALQPSDHLLEIGTGWGSMALYAASHYGCRVTTTTLSREQHAYTERRIRE 239

Query: 93  --HPNRLEIIQDD 103
               +R+ ++ +D
Sbjct: 240 MGLQDRVTLLLED 252


>gi|321442025|gb|ADW85427.1| arg methyltransferase [Synemon plana]
          Length = 244

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G  V++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKVVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLDSIIEIVK 77

Query: 102 DDALKVDFE 110
               +VD  
Sbjct: 78  GKVEEVDLP 86


>gi|313114746|ref|ZP_07800248.1| ribosomal protein L11 methyltransferase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622971|gb|EFQ06424.1| ribosomal protein L11 methyltransferase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 304

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
               G  V++IG G G L    L LGA     ++ D        + ++     ++L ++ 
Sbjct: 164 RVTGGERVLDIGTGSGILAIAALKLGAAVAEGVDIDPVAVRTAGENAALNGVQDKLTVLV 223

Query: 102 DD 103
            D
Sbjct: 224 GD 225


>gi|296445302|ref|ZP_06887261.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylosinus trichosporium OB3b]
 gi|296257257|gb|EFH04325.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylosinus trichosporium OB3b]
          Length = 227

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK------DQQFFPILKDISSQHP 94
           E+        V+EIG G G  +  +L   AR+V+ +E+      D +    L ++     
Sbjct: 76  EALALEPHHRVLEIGTGSG-FSAAVLARLAREVVTVERYATLASDARL--RLAELDLA-- 130

Query: 95  NRLEIIQDDAL 105
             +E I  D L
Sbjct: 131 -NVEAIFGDGL 140


>gi|302541526|ref|ZP_07293868.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459144|gb|EFL22237.1| cyclopropane-fatty-acyl-phospholipid synthase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 420

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIV 75
           + ++ + +    G  ++EIG G G L       GAR V  
Sbjct: 191 IDRLLDLARVGPGTRLLEIGTGWGELALRAALRGARVVTA 230


>gi|255534978|ref|YP_003095349.1| putative protoporphyrinogen oxidase [Flavobacteriaceae bacterium
           3519-10]
 gi|255341174|gb|ACU07287.1| putative protoporphyrinogen oxidase [Flavobacteriaceae bacterium
           3519-10]
          Length = 285

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 28/146 (19%)

Query: 5   NKSHSLKTILS--HYKIIPKKYMGQ------NFLLDLNI--------------LKKIAES 42
           N+   L  IL      +  ++ +G+      NF ++ N+              + +I + 
Sbjct: 55  NQLQKLTEILKQLKTGMPFQQILGETEFYGLNFFVNENVLIPRPETEELLELAIAEITKL 114

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +     + +++IG G G +  +L     A ++  I+  ++   + +  +  H   +  I 
Sbjct: 115 TVKNQSLKILDIGTGSGIIPVVLKKHFPAAELSAIDYSEKALEVARKNADFHQVNINFIH 174

Query: 102 DDALKVDFEKFFNISSPIRIIANLPY 127
            D L  +    F+I     II+N PY
Sbjct: 175 QDYLGGELNGIFDI-----IISNPPY 195


>gi|296805082|ref|XP_002843368.1| nonribosomal peptide synthase [Arthroderma otae CBS 113480]
 gi|238845970|gb|EEQ35632.1| nonribosomal peptide synthase [Arthroderma otae CBS 113480]
          Length = 3983

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 31   LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA---RKVIVIEKDQQFFPILK 87
            ++ +I + +A+ +       ++EIGAG G  T+ +L       R     +    FF    
Sbjct: 1426 MNDHIARAVAQITHRFPQANILEIGAGSGGTTRKILRAVGNTFRHYTFTDISSGFFEKGA 1485

Query: 88   DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123
               +    ++     D  K   ++ F+  +   I+A
Sbjct: 1486 AKFAPWQRKMTFKVCDIEKNPIDQGFDEEAYDIIVA 1521


>gi|284032289|ref|YP_003382220.1| type 11 methyltransferase [Kribbella flavida DSM 17836]
 gi|283811582|gb|ADB33421.1| Methyltransferase type 11 [Kribbella flavida DSM 17836]
          Length = 233

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
                 ++E+G G G +T+ LL  G R V V E
Sbjct: 42 AIERDSEILELGCGTGRITRPLLARGHRLVAVDE 75


>gi|172059866|ref|YP_001807518.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia ambifaria
           MC40-6]
 gi|171992383|gb|ACB63302.1| tRNA (guanine-N(7)-)-methyltransferase [Burkholderia ambifaria
           MC40-6]
          Length = 255

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEK-DQQFFPILKDISSQHPNRLE 98
           ++        ++EIG G G  T  +         + +E  +     +LK I  Q    + 
Sbjct: 74  DAVFGRSAPRILEIGFGMGASTAEIAAHRPGDDFLGVEVHEPGVGALLKLIGEQDLPNIR 133

Query: 99  IIQDDALKVDFEKFFNIS 116
           IIQ DA++V        S
Sbjct: 134 IIQHDAVEVLEHMLAPES 151


>gi|147678312|ref|YP_001212527.1| formamidopyrimidine-DNA glycosylase [Pelotomaculum
           thermopropionicum SI]
 gi|189044668|sp|A5D0T6|FPG_PELTS RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA
           glycosylase; AltName: Full=DNA-(apurinic or apyrimidinic
           site) lyase mutM; Short=AP lyase mutM
 gi|146274409|dbj|BAF60158.1| formamidopyrimidine-DNA glycosylase [Pelotomaculum
           thermopropionicum SI]
          Length = 276

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 236 TLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278
           T    L  +  +  LH+A I     A  L+  +  R+   + D
Sbjct: 167 TFIAGLGNIYADEALHRARINPERLATTLTPREIARLYRAIRD 209


>gi|33593985|ref|NP_881629.1| hypothetical protein BP3058 [Bordetella pertussis Tohama I]
 gi|33564059|emb|CAE43327.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332383402|gb|AEE68249.1| hypothetical protein BPTD_3022 [Bordetella pertussis CS]
          Length = 419

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-----GARKVIVIEKDQQFFPILKDI 89
           + +++A+   + D  +V+E GAG G L + +L          + +++E         +  
Sbjct: 116 VARQVAQVLRATDTASVLEFGAGTGALAEGVLRALAGMDCPARYLIVEVSADLRQRQQSR 175

Query: 90  SSQHPNRLEIIQD 102
            +   +R++ +  
Sbjct: 176 LAPFGDRVQWLDQ 188


>gi|84390120|ref|ZP_00991382.1| protein-L-isoaspartate O-methyltransferase [Vibrio splendidus
           12B01]
 gi|84376774|gb|EAP93649.1| protein-L-isoaspartate O-methyltransferase [Vibrio splendidus
           12B01]
          Length = 208

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLELQQDSRVLEIGTGSGYQTAVLAQL-VDHVYSVER----IKSLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+         D  + ++  +P   I
Sbjct: 116 RLKQLDFYNISTKHGDGWQGWSSKAPFDAI 145


>gi|16802679|ref|NP_464164.1| hypothetical protein lmo0637 [Listeria monocytogenes EGD-e]
 gi|47096300|ref|ZP_00233897.1| methyltransferase, UbiE/COQ5 family [Listeria monocytogenes str.
          1/2a F6854]
 gi|217965273|ref|YP_002350951.1| methyltransferase, UbiE/COQ5 family [Listeria monocytogenes
          HCC23]
 gi|224498716|ref|ZP_03667065.1| methyltransferase, UbiE/COQ5 family protein [Listeria
          monocytogenes Finland 1988]
 gi|224502063|ref|ZP_03670370.1| methyltransferase, UbiE/COQ5 family protein [Listeria
          monocytogenes FSL R2-561]
 gi|254830377|ref|ZP_05235032.1| methyltransferase, UbiE/COQ5 family protein [Listeria
          monocytogenes 10403S]
 gi|254900130|ref|ZP_05260054.1| methyltransferase, UbiE/COQ5 family protein [Listeria
          monocytogenes J0161]
 gi|254911316|ref|ZP_05261328.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935643|ref|ZP_05267340.1| methyltransferase [Listeria monocytogenes F6900]
 gi|255025668|ref|ZP_05297654.1| methyltransferase, UbiE/COQ5 family protein [Listeria
          monocytogenes FSL J2-003]
 gi|16410026|emb|CAC98715.1| lmo0637 [Listeria monocytogenes EGD-e]
 gi|47015345|gb|EAL06281.1| methyltransferase, UbiE/COQ5 family [Listeria monocytogenes str.
          1/2a F6854]
 gi|217334543|gb|ACK40337.1| methyltransferase, UbiE/COQ5 family [Listeria monocytogenes
          HCC23]
 gi|258608224|gb|EEW20832.1| methyltransferase [Listeria monocytogenes F6900]
 gi|293589247|gb|EFF97581.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|307570171|emb|CAR83350.1| methyltransferase, UbiE/COQ5 family [Listeria monocytogenes L99]
          Length = 197

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 24/52 (46%)

Query: 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
          ++       +++++GAG G LT     L    V  ++ D +   +++  + +
Sbjct: 36 QAMPIGKTASILDLGAGTGFLTIPAAKLVDNTVFALDLDAKMLELIESKAKE 87


>gi|312127403|ref|YP_003992277.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777422|gb|ADQ06908.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 304

 Score = 35.6 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 34/68 (50%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
               + V+++G G G L        A++V+ ++ D+    + ++ +  +   +EI ++D 
Sbjct: 166 VKPEMDVLDVGTGSGILAIAAKKFLAKRVLAVDIDEVAVKVAEENARLNGVEIEIKKNDL 225

Query: 105 LKVDFEKF 112
           ++   EKF
Sbjct: 226 VEGIEEKF 233


>gi|326777751|ref|ZP_08237016.1| Methyltransferase type 11 [Streptomyces cf. griseus XylebKG-1]
 gi|326658084|gb|EGE42930.1| Methyltransferase type 11 [Streptomyces cf. griseus XylebKG-1]
          Length = 225

 Score = 35.6 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 38  KIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           ++A++  +L     V+E+  G G  T++LL   AR +  ++   +     +D       R
Sbjct: 41  RLAKALDALPVSGDVLELACGTGQWTKLLLPR-ARSLTALDAAPEMLRRARDRMRGTATR 99

Query: 97  LEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIG--TRLLFNWISADTWPPFWESLTLL 153
              I+ D  + + ++ ++ +     +    P  +     LL   ++      F +  +  
Sbjct: 100 F--IEADIFEWEPDRRYDTVFFAFWLSHVPPIEMEPFWDLLRRALAPGGRVVFLDDSSAK 157

Query: 154 FQKE 157
            + E
Sbjct: 158 VEIE 161


>gi|312112845|ref|YP_004010441.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311217974|gb|ADP69342.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 222

 Score = 35.6 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIG--AGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           +LL   +L ++ E++       V+++G   G G     +L+  A KV  +E        +
Sbjct: 65  YLLQPMVLARLLEAAEPRREDHVLDVGGATGYGA---AILSRLAAKVDALETSAALAEAM 121

Query: 87  KDISS 91
           +   S
Sbjct: 122 RKRLS 126


>gi|291302169|ref|YP_003513447.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
 gi|290571389|gb|ADD44354.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
          Length = 176

 Score = 35.6 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 36 LKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
          L+   ++        ++E+G G G  +T +   L    VI I++ ++        +  H 
Sbjct: 9  LRWAVDTLSPAPDDRLLEVGCGHGVAVTLVSQRLDTGTVIGIDRSEKMIAAATRRNRSHV 68

Query: 95 NR 96
          + 
Sbjct: 69 DN 70


>gi|281420491|ref|ZP_06251490.1| putative methyltransferase [Prevotella copri DSM 18205]
 gi|281405264|gb|EFB35944.1| putative methyltransferase [Prevotella copri DSM 18205]
          Length = 176

 Score = 35.6 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI-IQDD-- 103
           +  + +++ AG G+++  L++ G  +VI +E D+     ++    +     +I I+ D  
Sbjct: 43  EDTSALDLFAGTGSISLELVSRGCSRVISVEADRDHANFIRQCFQKLGEDKDILIRGDVF 102

Query: 104 -ALKVDFEKF-FNISSPIRIIANLPY 127
             LK   +KF F  + P   +  LP 
Sbjct: 103 RFLKTCKQKFDFIFADPPYALKELPQ 128


>gi|254169251|ref|ZP_04876084.1| tRNA methyltransferase complex GCD14 subunit superfamily
           [Aciduliprofundum boonei T469]
 gi|197621788|gb|EDY34370.1| tRNA methyltransferase complex GCD14 subunit superfamily
           [Aciduliprofundum boonei T469]
          Length = 237

 Score = 35.6 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 34/105 (32%), Gaps = 12/105 (11%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILK 87
           L D      I    G   G  V+E GAG G ++  LL  T    KV   E    F  I K
Sbjct: 65  LKD---AAYIIARCGIRSGWRVVEGGAGSGAMSIALLYYTYPDGKVYTYELRDDFAAIAK 121

Query: 88  DISSQHPNRLEII--QDDALKVDFEK-----FFNISSPIRIIANL 125
                   +   I  + D  K   E+       +I  P   +   
Sbjct: 122 KNVENAGLQAHWILKKGDIRKDVEERDVDGFILDIPEPWEAVDMA 166


>gi|124003530|ref|ZP_01688379.1| ribosomal RNA adenine dimethylase [Microscilla marina ATCC 23134]
 gi|123991099|gb|EAY30551.1| ribosomal RNA adenine dimethylase [Microscilla marina ATCC 23134]
          Length = 183

 Score = 35.6 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ 92
           +++K+           ++E+GAG G +T+ +L       +++  E + +F  +L+ I   
Sbjct: 27  LIRKMLLPIDFSKAKVIVELGAGNGCITKAILDKMLPDAQLLSFEVNPKFIDLLEGI--- 83

Query: 93  HPNRLEIIQDDALKVD-FEKFFNISSPIRIIANLPYNIGTRLL-FNWISADTWPPFWESL 150
           +  RL +I D A K+  +    N+     +++ LP  I  + L  N + A       E +
Sbjct: 84  NDKRLHVIADSAEKIPEYLAQHNLIHTNAVVSGLPLAIFPKDLNTNIMEAIKNTLSDEGV 143

Query: 151 TLLFQKEVG 159
              FQ  + 
Sbjct: 144 YTQFQYSLA 152


>gi|327405739|ref|YP_004346577.1| type 12 methyltransferase [Fluviicola taffensis DSM 16823]
 gi|327321247|gb|AEA45739.1| Methyltransferase type 12 [Fluviicola taffensis DSM 16823]
          Length = 212

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 28/76 (36%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             S G      +I+IG G   L   LL  G   + V++  ++     K        ++  
Sbjct: 36  ISSFGITKDAKIIDIGGGDSKLVDYLLDKGFENITVLDISEKALEKAKKRLGDKAKKVNW 95

Query: 100 IQDDALKVDFEKFFNI 115
           +  D  + +    F+I
Sbjct: 96  VVSDITEFEPNTTFDI 111


>gi|326390166|ref|ZP_08211727.1| O-methyltransferase family 3 [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993814|gb|EGD52245.1| O-methyltransferase family 3 [Thermoanaerobacter ethanolicus JW
           200]
          Length = 212

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS--SQHPN 95
           I +         ++EIG   G  T ++    +   V+ IE+D     I K+    ++  +
Sbjct: 48  IVK---LKKPNNILEIGTAIGYSTIIMAKAYSEVSVVTIERDINLAEIAKENFKKAKVED 104

Query: 96  RLEIIQDDALKV 107
           R+E+I  +A +V
Sbjct: 105 RIELICGEAQQV 116


>gi|325856899|ref|ZP_08172397.1| ribosomal protein L11 methyltransferase [Prevotella denticola CRIS
           18C-A]
 gi|325483272|gb|EGC86249.1| ribosomal protein L11 methyltransferase [Prevotella denticola CRIS
           18C-A]
          Length = 288

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 8/98 (8%)

Query: 35  ILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + I        L G   ++ G G G L+ +    GAR+ +  + D+         ++ 
Sbjct: 137 TTQMIVSLLLDQELKGKRTLDCGCGTGILSIVAARCGAREAVCYDIDEWSV-----RNAH 191

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII-ANLPYNI 129
           H   L  ++ D L+ D     +++    +I AN+  NI
Sbjct: 192 HNAELNGVEIDVLEGDKSVLSHVNGVFDVIMANINRNI 229


>gi|313681984|ref|YP_004059722.1| protein-(glutamine-n5) methyltransferase, release factor-specific
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154844|gb|ADR33522.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Sulfuricurvum kujiense DSM 16994]
          Length = 274

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISS 91
            +++ ++     + D IT++E+G G G ++ +L L L   ++I ++   +   + +    
Sbjct: 98  EHLVDEVLSRVPADDVITIVEVGIGSGIISILLALHLPQARLIAVDISPKALAVARRNIE 157

Query: 92  QH--PNRLEIIQDDALKVDFEKF-FNISSPIRIIANLP 126
                +R+E+ + D L    EK    +S+P  I  + P
Sbjct: 158 AFGLSDRIELREGDLLSCIDEKIDLLVSNPPYIAHDAP 195


>gi|312830469|emb|CBX35311.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|329726314|gb|EGG62782.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 277

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 106 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 165

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
           ALK   ++   ++    +I+N PY
Sbjct: 166 ALKPLIKEGIKLNG---LISNPPY 186


>gi|293392781|ref|ZP_06637099.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Serratia
           odorifera DSM 4582]
 gi|291424640|gb|EFE97851.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Serratia
           odorifera DSM 4582]
          Length = 208

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLNLTPTSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D    +    P    I+   P  I + L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWLGWASRGPFDAIIVTAAPPEIPSALMAQL 162


>gi|227824691|ref|ZP_03989523.1| 50S ribosomal protein L11 methyltransferase [Acidaminococcus sp.
           D21]
 gi|226905190|gb|EEH91108.1| 50S ribosomal protein L11 methyltransferase [Acidaminococcus sp.
           D21]
          Length = 313

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 45  SLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEII 100
               I V ++G G G   +T  L+  GAR +  I+ D +   + K+  +++   NR+ + 
Sbjct: 173 VTPNIDVYDVGTGSGILAMTAALM--GARSIHAIDIDGKAVEVAKENIAKNHLSNRITVK 230

Query: 101 QDDALKVDFEK 111
           + + L    EK
Sbjct: 231 KGNLLDDADEK 241


>gi|83748999|ref|ZP_00946007.1| Cyclopropane-fatty-acyl-phospholipid synthase [Ralstonia
           solanacearum UW551]
 gi|207744046|ref|YP_002260438.1| cyclopropane-fatty-acyl-phospholipid synthase protein [Ralstonia
           solanacearum IPO1609]
 gi|83724337|gb|EAP71507.1| Cyclopropane-fatty-acyl-phospholipid synthase [Ralstonia
           solanacearum UW551]
 gi|206595448|emb|CAQ62375.1| cyclopropane-fatty-acyl-phospholipid synthase protein [Ralstonia
           solanacearum IPO1609]
          Length = 406

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 30  LLDLNI--LKKIAESSGSLDGITVIEIGAGPGNL-TQMLLTLGARKV-IVIEKDQQFFPI 85
           L D  +  +  I        G T+++IG G G L  +     GAR + + + ++Q     
Sbjct: 155 LDDAQVKKIDHILTKIRLQPGQTLLDIGCGWGALVLRAAQKFGARCLGVTLSQNQFDLAR 214

Query: 86  LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
            +  ++   +R+EI   D                R +      I +  +F  +     P 
Sbjct: 215 ERIRAASLEDRVEIRLQD---------------YRDLTGTFDRITSVGMFEHVGRKNLPG 259

Query: 146 FWESLTLLF 154
           ++  +  L 
Sbjct: 260 YFRRIHGLL 268


>gi|93005243|ref|YP_579680.1| methionine biosynthesis MetW [Psychrobacter cryohalolentis K5]
 gi|92392921|gb|ABE74196.1| Methionine biosynthesis MetW [Psychrobacter cryohalolentis K5]
          Length = 205

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
                 V+++G G G L   L          +E D+        I+    N L I++ D 
Sbjct: 12  IAPHSHVLDLGCGNGELLAHLQQNRGVTGYGLEIDED------KINEAIANGLSIVEQD- 64

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW 137
           L     +F + S    ++A     + +  +   
Sbjct: 65  LNDGLARFADNSFDTVVMARALQAVKSPDILLL 97


>gi|15925107|ref|NP_372641.1| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927691|ref|NP_375224.1| hypothetical protein SA1919 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268568|ref|YP_001247511.1| HemK family modification methylase [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394632|ref|YP_001317307.1| HemK family modification methylase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156980432|ref|YP_001442691.1| hypothetical protein SAHV_2101 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315786|ref|ZP_04838999.1| hypothetical protein SauraC_06505 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006905|ref|ZP_05145506.2| hypothetical protein SauraM_10565 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257793875|ref|ZP_05642854.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A9781]
 gi|258407043|ref|ZP_05680193.1| modification methylase [Staphylococcus aureus A9763]
 gi|258422065|ref|ZP_05684982.1| HemK family modification methylase [Staphylococcus aureus A9719]
 gi|258433566|ref|ZP_05688639.1| protoporphyrinogen oxidase [Staphylococcus aureus A9299]
 gi|258440461|ref|ZP_05690631.1| protoporphyrinogen oxidase [Staphylococcus aureus A8115]
 gi|258445669|ref|ZP_05693847.1| HemK family modification methylase [Staphylococcus aureus A6300]
 gi|258450123|ref|ZP_05698218.1| protoporphyrinogen oxidase [Staphylococcus aureus A6224]
 gi|258453422|ref|ZP_05701404.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A5937]
 gi|269203753|ref|YP_003283022.1| HemK family modification methylase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894761|ref|ZP_06302987.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A8117]
 gi|282929041|ref|ZP_06336626.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A10102]
 gi|295407047|ref|ZP_06816849.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           A8819]
 gi|296275404|ref|ZP_06857911.1| HemK family modification methylase [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297246046|ref|ZP_06929903.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           A8796]
 gi|13701911|dbj|BAB43203.1| SA1919 [Staphylococcus aureus subsp. aureus N315]
 gi|14247890|dbj|BAB58279.1| similar to protoporphyrinogen oxidase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|147741637|gb|ABQ49935.1| modification methylase, HemK family [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947084|gb|ABR53020.1| modification methylase, HemK family [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722567|dbj|BAF78984.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787847|gb|EEV26187.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A9781]
 gi|257841376|gb|EEV65820.1| modification methylase [Staphylococcus aureus A9763]
 gi|257841965|gb|EEV66397.1| HemK family modification methylase [Staphylococcus aureus A9719]
 gi|257849297|gb|EEV73276.1| protoporphyrinogen oxidase [Staphylococcus aureus A9299]
 gi|257852530|gb|EEV76448.1| protoporphyrinogen oxidase [Staphylococcus aureus A8115]
 gi|257855508|gb|EEV78445.1| HemK family modification methylase [Staphylococcus aureus A6300]
 gi|257856597|gb|EEV79503.1| protoporphyrinogen oxidase [Staphylococcus aureus A6224]
 gi|257864403|gb|EEV87149.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A5937]
 gi|262076043|gb|ACY12016.1| HemK family modification methylase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282589347|gb|EFB94439.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A10102]
 gi|282762849|gb|EFC02983.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A8117]
 gi|285817781|gb|ADC38268.1| Methylase of polypeptide chain release factors [Staphylococcus
           aureus 04-02981]
 gi|294968072|gb|EFG44099.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           A8819]
 gi|297177045|gb|EFH36300.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           A8796]
 gi|315128788|gb|EFT84788.1| hypothetical protein CGSSa03_07701 [Staphylococcus aureus subsp.
           aureus CGS03]
          Length = 278

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 107 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 166

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
           ALK   ++   ++    +I+N PY
Sbjct: 167 ALKPLIKEGIKLNG---LISNPPY 187


>gi|332188207|ref|ZP_08389935.1| methyltransferase domain protein [Sphingomonas sp. S17]
 gi|332011706|gb|EGI53783.1| methyltransferase domain protein [Sphingomonas sp. S17]
          Length = 283

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQM 64
          + ++I   +       V+E+G G G LTQ 
Sbjct: 35 LAERIVAVAPPRP--RVLEVGCGTGFLTQA 62


>gi|330444601|ref|YP_004377587.1| methylase [Chlamydophila pecorum E58]
 gi|328807711|gb|AEB41884.1| methylase [Chlamydophila pecorum E58]
          Length = 264

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
             +V++IG G G L + L    A   + ++   +   I K+I S   +R  +   
Sbjct: 57  NSSVLDIGCGQGILERALPATCAY--LGVDISPKLIAIAKNICSTKSHRFLVHDA 109


>gi|325929552|ref|ZP_08190666.1| cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas
           perforans 91-118]
 gi|325540062|gb|EGD11690.1| cyclopropane-fatty-acyl-phospholipid synthase [Xanthomonas
           perforans 91-118]
          Length = 431

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQH 93
           L++I +         V+EIG G G            +V      ++ F +      ++  
Sbjct: 188 LERICQKLRLAPHHHVLEIGTGWGGFALHAAREHGCRVTTTTISREQFELANQRIAAAGL 247

Query: 94  PNRLEIIQDD 103
            +R+ ++  D
Sbjct: 248 SDRVTVLLHD 257


>gi|323452346|gb|EGB08220.1| hypothetical protein AURANDRAFT_64222 [Aureococcus anophagefferens]
          Length = 908

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            G  V+++GAG G L+   +  GA  V+  E+       L+   ++
Sbjct: 334 PGKRVLDLGAGCGALSLAAVGRGASFVVACERSPALADALRATLAR 379


>gi|322371596|ref|ZP_08046142.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
 gi|320548887|gb|EFW90555.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
          Length = 263

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI---SSQHPNRLEI 99
                   V+++G G G L ++L      +V+  + D +   +  +     +   +RL  
Sbjct: 26  LDLDSRRRVLDVGCGTGELARVLADETPGEVVGTDADPRLLSVAAEFVPCVAGDAHRLPF 85

Query: 100 IQDDA-LKVDFEKFFNISSPIRIIANLPYNIGTRLL 134
             D   L V      N+  PIR +      + + L+
Sbjct: 86  PDDTFDLVVCQALLINLPDPIRAV-REFARVSSDLV 120


>gi|310828818|ref|YP_003961175.1| hypothetical protein ELI_3248 [Eubacterium limosum KIST612]
 gi|308740552|gb|ADO38212.1| hypothetical protein ELI_3248 [Eubacterium limosum KIST612]
          Length = 247

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHPNRLEIIQDDA 104
            +  +V+E G G GN+T  L   G   V  ++  ++   +  + I+ Q+   +     D 
Sbjct: 34  NEVKSVLEFGCGTGNITSELAQKG-YAVTAVDLSEEMLTVADEKIAEQNLGDVRFFMGDM 92

Query: 105 LKVDFEKFFN 114
                 + F+
Sbjct: 93  SNFQIGEEFD 102


>gi|292492724|ref|YP_003528163.1| methyltransferase type 11 [Nitrosococcus halophilus Nc4]
 gi|291581319|gb|ADE15776.1| Methyltransferase type 11 [Nitrosococcus halophilus Nc4]
          Length = 247

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 28  NFLL---D--LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF 82
           NFL    D    +  K+ E         ++++G G G  +  +L     K  VI  D  F
Sbjct: 18  NFLYYSPDFVRQLTSKMIEKLALNQDDVLVDLGCGTGIYSLDILEQVPLKNPVIGVDP-F 76

Query: 83  FPILKDISSQHPNRLEIIQDDALKV 107
             +L  I  + P  +E + +DAL  
Sbjct: 77  PEMLAQIPEEAP--IERVAEDALDF 99


>gi|269121536|ref|YP_003309713.1| methyltransferase small [Sebaldella termitidis ATCC 33386]
 gi|268615414|gb|ACZ09782.1| methyltransferase small [Sebaldella termitidis ATCC 33386]
          Length = 222

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
           D  +L             T+++IGAG G L  +L      ++  +E  +  F  L+    
Sbjct: 31  DPLLLADFCRE-NIKKSGTLLDIGAGNGILPLLLCNANLTEISAVEIQKNSFDCLEKNID 89

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
            +    +II       D   FF       II+N PY 
Sbjct: 90  LNSLSDKIIP---YHTDINDFFPDFEFDYIISNPPYY 123


>gi|289209404|ref|YP_003461470.1| ribosomal protein L11 methyltransferase [Thioalkalivibrio sp.
           K90mix]
 gi|288945035|gb|ADC72734.1| ribosomal protein L11 methyltransferase [Thioalkalivibrio sp.
           K90mix]
          Length = 293

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           ++       V++ G G G L    L LGAR  +  + D+Q  
Sbjct: 152 AANPPRDQEVLDYGCGSGILAIAALKLGARHAVGTDIDRQAV 193


>gi|121594384|ref|YP_986280.1| type 11 methyltransferase [Acidovorax sp. JS42]
 gi|222111030|ref|YP_002553294.1| protein-l-isoaspartate(d-aspartate) o-methyltransferase [Acidovorax
           ebreus TPSY]
 gi|120606464|gb|ABM42204.1| Methyltransferase type 11 [Acidovorax sp. JS42]
 gi|221730474|gb|ACM33294.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acidovorax
           ebreus TPSY]
          Length = 236

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            +GQ  L    +  ++ +         V+EIGAG G +   LL   A +V+ +E   +  
Sbjct: 75  RLGQVMLA-PRVDARMLQDLQVQSTDRVLEIGAGSGYM-AALLAARAERVVSLEIVPELA 132

Query: 84  PILKD-ISSQHPNRLEIIQDD 103
              ++ + S   +  E+ Q D
Sbjct: 133 EFARENLRSAGVDNAEVRQSD 153


>gi|94272311|ref|ZP_01292104.1| Cyclopropane-fatty-acyl-phospholipid synthase [delta
           proteobacterium MLMS-1]
 gi|93450170|gb|EAT01483.1| Cyclopropane-fatty-acyl-phospholipid synthase [delta
           proteobacterium MLMS-1]
          Length = 373

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L+ IA          +++IG+G G L   L      +V  +       P L + + QH +
Sbjct: 142 LELIAAKLELKASDHLLDIGSGWGGLAGYLAREYGCRVTGVNI---SKPQL-EHARQHCH 197

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANL 125
            L +   D  + D+ +       +  +   
Sbjct: 198 GLPV---DFQERDYREIQGCFDKVVSVGMF 224


>gi|145221058|ref|YP_001131736.1| tRNA (guanine-N(7))-methyltransferase [Mycobacterium gilvum
           PYR-GCK]
 gi|315441971|ref|YP_004074850.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium sp. Spyr1]
 gi|189036058|sp|A4T3S4|TRMB_MYCGI RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|145213544|gb|ABP42948.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium gilvum
           PYR-GCK]
 gi|315260274|gb|ADT97015.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium sp. Spyr1]
          Length = 263

 Score = 35.6 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ-----FFPILKDISSQHP-NRLE 98
                V+EIG G G  T  +        V+ +E  ++        I +  +++HP + + 
Sbjct: 82  RHAPVVLEIGCGTGTSTLAMAQAEPGIDVVAVEVYRRGLAQLLSAIDRTAATEHPVSNIR 141

Query: 99  IIQDDALKVDFEKF 112
           +I+ D + V    F
Sbjct: 142 LIRGDGVDVLTHMF 155


>gi|326773430|ref|ZP_08232713.1| tRNA (adenine-N(1)-)-methyltransferase [Actinomyces viscosus C505]
 gi|326636660|gb|EGE37563.1| tRNA (adenine-N(1)-)-methyltransferase [Actinomyces viscosus C505]
          Length = 374

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD----ISSQHPNRL 97
               G  V+E G G G LT  LL+    A  ++ IE+ + F  I          +H    
Sbjct: 134 DIFPGARVLEAGVGSGALTMNLLSAIGEAGHLLSIERREDFAQIAASNVDAWFGRHHPAW 193

Query: 98  EIIQDDA 104
           E+   D 
Sbjct: 194 ELRTGDF 200


>gi|315159265|gb|EFU03282.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0312]
          Length = 277

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEKALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|310798956|gb|EFQ33849.1| methyltransferase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 422

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           L + ++ + I    G   G  V+++G G G +   +  +    V  +  D        + 
Sbjct: 180 LYEESVARDI----GLGPGDRVLDLGCGRGRVAAHMAAVSGALVTGLNIDPNQVAQADEF 235

Query: 90  SSQHP--NRLEIIQDDALKVDFEK 111
           ++Q    NR  +   + L + F  
Sbjct: 236 NAQLGLRNRFTVHDMNDLPLPFPD 259


>gi|307198020|gb|EFN79080.1| Protein arginine N-methyltransferase 8 [Harpegnathos saltator]
          Length = 382

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ 101
               G TV++IG G G L+      GA +VI IE         + I   +   N + I++
Sbjct: 94  HLFKGKTVLDIGCGTGILSMFAAKAGAARVIGIEC-SNIVEYAEKIVEANNLSNVITILK 152

Query: 102 DDALKVDFEKFFNISSPIRII 122
               KV+     +    + II
Sbjct: 153 G---KVEEVSLPDGIEKVDII 170


>gi|307105490|gb|EFN53739.1| hypothetical protein CHLNCDRAFT_53519 [Chlorella variabilis]
          Length = 349

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 7/147 (4%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQ 92
             ++ + +    G  V+++G G G   L    L   + +V  ++  D           +Q
Sbjct: 92  AARLVQLAALQPGEEVLDVGTGTGLVALAAARLVGSSGRVTGVDLSDAMIHKAAVKARAQ 151

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
               + ++  D      E  F       I+ +        +        +W      L  
Sbjct: 152 GLTNMRLLAADI----EECAFGAGRFHAILCSNALPFLPDIPAALAEWRSWLRPGGRLLF 207

Query: 153 LFQKEVGERITAQKNSPHYGRLSVLTG 179
              K       A          +V   
Sbjct: 208 NAPKASRGAGCAAGLGVGSCAFTVFAQ 234


>gi|295102911|emb|CBL00456.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Faecalibacterium prausnitzii L2-6]
          Length = 304

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQ 101
               G  V++IG G G L    L LGA     ++ D        + ++     ++L ++ 
Sbjct: 164 RVKGGERVLDIGTGSGILAIAALKLGAAVAEGVDIDPVAVRTAGENAALNGVADKLTVLV 223

Query: 102 DD 103
            D
Sbjct: 224 GD 225


>gi|269839612|ref|YP_003324304.1| methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798]
 gi|269791342|gb|ACZ43482.1| Methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798]
          Length = 262

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-----VIEKDQQFFPILKDISSQHPN 95
             +    G  V+++G G G L      LGA  V      V +        L+  + +   
Sbjct: 106 RLADVRAGDKVLDVGTGLGLLAVAAAMLGADVVALDMWSVWDLSGNGRAGLERNAREEGV 165

Query: 96  RLEIIQDDALKVDFEK 111
           +L +++ DA  + F  
Sbjct: 166 QLRVVEGDARSLPFPD 181


>gi|238758931|ref|ZP_04620103.1| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia aldovae
           ATCC 35236]
 gi|238702888|gb|EEP95433.1| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia aldovae
           ATCC 35236]
          Length = 382

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
           +++ +         ++EIG G G L +         V      Q+ +   +     +   
Sbjct: 155 RRLCQQLDLQPEDHLLEIGTGWGALAEFAAREYGCCVTTTTISQEQYQYAQQRIQQAGLE 214

Query: 95  NRLEIIQDD 103
           +R+ ++ +D
Sbjct: 215 DRVTLLFED 223


>gi|229549321|ref|ZP_04438046.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis ATCC 29200]
 gi|255972030|ref|ZP_05422616.1| modification methylase HemK [Enterococcus faecalis T1]
 gi|256957797|ref|ZP_05561968.1| modification methylase HemK [Enterococcus faecalis DS5]
 gi|257079735|ref|ZP_05574096.1| modification methylase HemK [Enterococcus faecalis JH1]
 gi|294779687|ref|ZP_06745077.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis PC1.1]
 gi|300861227|ref|ZP_07107314.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis TUSoD Ef11]
 gi|307270730|ref|ZP_07552021.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX4248]
 gi|312953587|ref|ZP_07772424.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0102]
 gi|229305558|gb|EEN71554.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis ATCC 29200]
 gi|255963048|gb|EET95524.1| modification methylase HemK [Enterococcus faecalis T1]
 gi|256948293|gb|EEU64925.1| modification methylase HemK [Enterococcus faecalis DS5]
 gi|256987765|gb|EEU75067.1| modification methylase HemK [Enterococcus faecalis JH1]
 gi|294453241|gb|EFG21653.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis PC1.1]
 gi|300850266|gb|EFK78016.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis TUSoD Ef11]
 gi|306513040|gb|EFM81681.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX4248]
 gi|310628425|gb|EFQ11708.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0102]
 gi|315035853|gb|EFT47785.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0027]
 gi|315151854|gb|EFT95870.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0031]
 gi|323481493|gb|ADX80932.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis 62]
 gi|327535787|gb|AEA94621.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           OG1RF]
 gi|329578087|gb|EGG59500.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX1467]
          Length = 277

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 21/119 (17%)

Query: 25  MGQ-----N-FLLDLNIL------KKIAE---SSGSLDGITVIEIGAGPGNLTQML-LTL 68
           +GQ     + F+++ + L      +++ E    +     +TV+++G G G +   L L  
Sbjct: 74  LGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLAR 133

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
              +VI I+  ++   + K  +      +E    + L+    +  ++     +I+N PY
Sbjct: 134 PNWRVIAIDLSEKALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL-----LISNPPY 187


>gi|241035948|ref|XP_002406780.1| acid methyltransferase, putative [Ixodes scapularis]
 gi|215492041|gb|EEC01682.1| acid methyltransferase, putative [Ixodes scapularis]
          Length = 160

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLL---TLGARKVIVIEKDQQFFPILKDISSQ---HPN 95
           SSG  D    +++G GPGN+T+ +L    L  R+++ ++  +      ++  S      +
Sbjct: 40  SSGPADDQQFLDLGYGPGNITRDVLLPQCLPCRRLVAVDSSEDMLKYARERFSHPKIFYD 99

Query: 96  RLEIIQDD 103
            L+I+  D
Sbjct: 100 TLDIMSGD 107


>gi|255931115|ref|XP_002557114.1| Pc12g02220 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581733|emb|CAP79849.1| Pc12g02220 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 278

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 34/140 (24%), Gaps = 10/140 (7%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           F+    +  K+  S        V+++G G G  T   L      V+ I+          +
Sbjct: 23  FVHSAKLTGKLLASLDPKPTDKVLDVGCGDGKFTANFLP-AIDSVLGIDSSASMIESANE 81

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
                     ++    L+ +          +         I    L   +  ++      
Sbjct: 82  DYGSSKATFRVVDCRYLEKETSIVNGSWDKV---------ISNAALHWILRDESTRMSTL 132

Query: 149 SLTLLFQKEVGERITAQKNS 168
                  K  G  +      
Sbjct: 133 RAIYGCLKPGGTYVFEMGGH 152


>gi|210621889|ref|ZP_03292886.1| hypothetical protein CLOHIR_00831 [Clostridium hiranonis DSM 13275]
 gi|210154520|gb|EEA85526.1| hypothetical protein CLOHIR_00831 [Clostridium hiranonis DSM 13275]
          Length = 500

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--------ISSQHPNRLEII 100
             V+ +G G G   + +L      + +++ D+    + ++         +S + NRL I+
Sbjct: 282 DNVLILGGGDGLAVREILKYKEPSITLVDLDKDMVNLCRENKQIKELNKNSLNSNRLTIV 341

Query: 101 QDDALKV 107
             DA + 
Sbjct: 342 NQDAYQF 348


>gi|171912498|ref|ZP_02927968.1| hypothetical protein VspiD_15000 [Verrucomicrobium spinosum DSM
           4136]
          Length = 215

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + +K A    +  G  V+++G GPG    +           IE+  +   I +++  +  
Sbjct: 50  VARKAAALLVNKPGTRVLDVGCGPGKFCVIGAATTKGVFTGIEQRGELVGIARNLIDRSG 109

Query: 95  -NRLEIIQDDALKVDFEKF 112
             R++I+  +   VDF  +
Sbjct: 110 IPRVQIVHGNITTVDFTDY 128


>gi|157371913|ref|YP_001479902.1| methyltransferase small [Serratia proteamaculans 568]
 gi|262828677|sp|A8GI34|TRMN6_SERP5 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|157323677|gb|ABV42774.1| methyltransferase small [Serratia proteamaculans 568]
          Length = 260

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHP--NRLE 98
           +       V++IG+G G +  ML    A  V    +E D+       D   + P   R++
Sbjct: 54  APLAQAQRVLDIGSGSGLIALMLAQRTAENVQIDAVELDEAAAAQAHDNVLESPWSLRIQ 113

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +   D          +      I++N PY
Sbjct: 114 VHAQDI---HHFAQHHAGQYDLIVSNPPY 139


>gi|254361015|ref|ZP_04977160.1| biotin synthesis protein C [Mannheimia haemolytica PHL213]
 gi|261495768|ref|ZP_05992206.1| biotin synthesis protein C [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153092501|gb|EDN73556.1| biotin synthesis protein C [Mannheimia haemolytica PHL213]
 gi|261308573|gb|EEY09838.1| biotin synthesis protein C [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 251

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                    +EIG G G LT+ L++    +   +        + + + S  P        
Sbjct: 41  IDRQAFQRALEIGCGTGGLTKQLMSQLQVEHWELN---DLCDMREHLQSVLPQPFHFHCG 97

Query: 103 DALKVDFEKFFNI 115
           DA ++ F + +++
Sbjct: 98  DAEQLPFPQQYDL 110


>gi|108763675|ref|YP_633998.1| hypothetical protein MXAN_5861 [Myxococcus xanthus DK 1622]
 gi|108467555|gb|ABF92740.1| hypothetical protein MXAN_5861 [Myxococcus xanthus DK 1622]
          Length = 553

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 50  TVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           TV++   G G  LT         ++  +E D +   + +    +      +   DAL+  
Sbjct: 86  TVVDPSCGAGAFLTAASRLRPGVRLCGLELDPEVARLCQARVPEA----TVRAGDALRDG 141

Query: 109 FEKFFNISSPIR---IIANLPYNIGTRLL 134
            E     + P      + N PYN  + +L
Sbjct: 142 LEPLLATTPPDHQELWVGNPPYNGTSSVL 170


>gi|86146343|ref|ZP_01064667.1| protein-L-isoaspartate O-methyltransferase [Vibrio sp. MED222]
 gi|218710552|ref|YP_002418173.1| protein-L-isoaspartate O-methyltransferase [Vibrio splendidus
           LGP32]
 gi|254782278|sp|B7VK62|PIMT_VIBSL RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|85835822|gb|EAQ53956.1| protein-L-isoaspartate O-methyltransferase [Vibrio sp. MED222]
 gi|218323571|emb|CAV19796.1| Protein-L-isoaspartate O-methyltransferase [Vibrio splendidus
           LGP32]
          Length = 208

 Score = 35.6 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ K+ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYIVAKMTELLELQQDSRVLEIGTGSGYQTAVLAQL-VDHVYSVER----IKSLQWDAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L+         D  + ++  +P   I
Sbjct: 116 RLKQLDFYNISTKHGDGWQGWSSKAPFDAI 145


>gi|332671019|ref|YP_004454027.1| type 11 methyltransferase [Cellulomonas fimi ATCC 484]
 gi|332340057|gb|AEE46640.1| Methyltransferase type 11 [Cellulomonas fimi ATCC 484]
          Length = 305

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 40  AESSGSLDGITVIEI--GAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
             ++  + G  V++I  G+G G     LL   A  V+ ++   Q     ++  ++  + L
Sbjct: 33  VAAAELVRGKRVLDIASGSGYGG---HLLAETAASVVGVDVSAQAVAYAQEKFAR--DNL 87

Query: 98  EIIQDDALKVD 108
           E  Q DA ++ 
Sbjct: 88  EFRQGDATQIP 98


>gi|322514688|ref|ZP_08067716.1| biotin biosynthesis protein BioC [Actinobacillus ureae ATCC 25976]
 gi|322119386|gb|EFX91495.1| biotin biosynthesis protein BioC [Actinobacillus ureae ATCC 25976]
          Length = 256

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)

Query: 49  ITVIEIGAGPGNLTQMLL-TLGARKVIVIEK-----DQQFFPILKDISSQHPN-RLEIIQ 101
             V+EIG G G+LTQ L+       ++V +      D+    +L+ I    P    E + 
Sbjct: 47  QRVLEIGCGTGDLTQHLVREYQVEHLVVNDLSDVYQDR----VLQKIGENRPLVSFEFVA 102

Query: 102 DDALKVDFEKFFNI 115
            DA  + FE  F++
Sbjct: 103 GDAEHLAFEGQFDL 116


>gi|315129857|gb|EFT85847.1| hypothetical protein CGSSa03_02188 [Staphylococcus aureus subsp.
           aureus CGS03]
          Length = 312

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   +VI++G G G L+     +G +++  ++ D+    + K+   ++     +E +  
Sbjct: 171 VLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKDETEKF 240


>gi|307266433|ref|ZP_07547969.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918541|gb|EFN48779.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 308

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDD 103
            +    V ++G G G L+     LGA++V   + D+    + + +I   +   +++ + D
Sbjct: 171 VIPERIVFDVGCGSGILSIASSKLGAKEVYAADIDEASVEVARQNIELNNLQNVKVFKSD 230

Query: 104 AL 105
            L
Sbjct: 231 LL 232


>gi|307298996|ref|ZP_07578798.1| methyltransferase small [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915421|gb|EFN45806.1| methyltransferase small [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 225

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDF 109
           +E+GAG G ++  L      +V  +E D++   +    +S     N    +  D    D+
Sbjct: 48  LELGAGSGVISIYLAKNFGLEVTGVEVDRELHAVATKNASLNGVENLTRFVNCDI--DDY 105

Query: 110 EKFFNISSPIRIIANLPYNIGT 131
                      +++N P+ + +
Sbjct: 106 AANNRGEVFDMVVSNPPHFLHS 127


>gi|304382041|ref|ZP_07364593.1| possible N6-adenine-specific methyltransferase [Prevotella marshii
           DSM 16973]
 gi|304336795|gb|EFM03019.1| possible N6-adenine-specific methyltransferase [Prevotella marshii
           DSM 16973]
          Length = 176

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 57  GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE-IIQDDALKVDFEKFFNI 115
           G G+++  LL+ G R+V+ +E D++    ++    +       +I+ D  +         
Sbjct: 53  GTGSISLELLSRGCRQVVSVEADREHCLFIRQCLKKLSAENHLLIRGDVFRFLKSCRQQF 112

Query: 116 SSPIRIIANLPYNIG 130
                I A+ PY + 
Sbjct: 113 D---LIFADPPYELT 124


>gi|298694860|gb|ADI98082.1| probable methyltransferase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|323440476|gb|EGA98188.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus O11]
 gi|323443250|gb|EGB00868.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus O46]
          Length = 312

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   +VI++G G G L+     +G +++  ++ D+    + K+   ++     +E +  
Sbjct: 171 VLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKDETEKF 240


>gi|295428704|ref|ZP_06821330.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|283471334|emb|CAQ50545.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus ST398]
 gi|295127374|gb|EFG57014.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus EMRSA16]
          Length = 277

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 106 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 165

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
           ALK   ++   ++    +I+N PY
Sbjct: 166 ALKPLIKEGIKLNG---LISNPPY 186


>gi|282916848|ref|ZP_06324606.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282319335|gb|EFB49687.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus D139]
          Length = 312

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   +VI++G G G L+     +G +++  ++ D+    + K+   ++     +E +  
Sbjct: 171 VLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKDETEKF 240


>gi|258446823|ref|ZP_05694977.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A6300]
 gi|257854398|gb|EEV77347.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A6300]
          Length = 312

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   +VI++G G G L+     +G +++  ++ D+    + K+   ++     +E +  
Sbjct: 171 VLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKDETEKF 240


>gi|258424006|ref|ZP_05686888.1| LSU ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9635]
 gi|283770654|ref|ZP_06343546.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus H19]
 gi|257845627|gb|EEV69659.1| LSU ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9635]
 gi|283460801|gb|EFC07891.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470857|emb|CAQ50068.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus ST398]
 gi|302333254|gb|ADL23447.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 312

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   +VI++G G G L+     +G +++  ++ D+    + K+   ++     +E +  
Sbjct: 171 VLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKDETEKF 240


>gi|226288403|gb|EEH43915.1| sterol 24-C-methyltransferase [Paracoccidioides brasiliensis Pb18]
          Length = 377

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-----KDQQFFPILKDISSQHPNRL 97
            G  +   V+++G G G   + ++      VI +       D+    +         N+L
Sbjct: 123 VGLKENQLVLDVGCGVGGPAREIVKFAGVNVIGLNNNDYQIDR---AVHYATKEGLSNKL 179

Query: 98  EIIQDDALKVDFEK 111
             ++ D +++ FE 
Sbjct: 180 RFVKGDFMQMSFEP 193


>gi|257413713|ref|ZP_04743954.2| methyltransferase domain protein [Roseburia intestinalis L1-82]
 gi|257202476|gb|EEV00761.1| methyltransferase domain protein [Roseburia intestinalis L1-82]
          Length = 253

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
           +G  + E+G G G     L   G RKV  ++  ++   ++  I+S     + ++  DA K
Sbjct: 54  EGDKMCEVGCGSGQSAAYLQRHG-RKVTALDFSKECVELVNVINSHLNLGMNVVCTDATK 112


>gi|254512159|ref|ZP_05124226.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium
          KLH11]
 gi|221535870|gb|EEE38858.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium
          KLH11]
          Length = 330

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 57 GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
          G G  T+ LL  GA KVI +++D   F +  D +  + +RL
Sbjct: 37 GAGGYTRGLLEAGAEKVIGVDRDPLAFEMAADWAGGYGDRL 77


>gi|254505631|ref|ZP_05117777.1| methyltransferase [Vibrio parahaemolyticus 16]
 gi|219551284|gb|EED28263.1| methyltransferase [Vibrio parahaemolyticus 16]
          Length = 391

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 40  AESSGSLDGITV--IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
           A ++  L    +  +EIG G G  T+ L       VI ++ +      L   +
Sbjct: 174 ARAASLLPASHLELLEIGCGKGLSTEWLAKHLTCHVIAVDNEPSALAALTTRA 226


>gi|170785178|pdb|3BUS|A Chain A, Crystal Structure Of Rebm
 gi|170785179|pdb|3BUS|B Chain B, Crystal Structure Of Rebm
          Length = 273

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF--PILK 87
           L D  I            G  V+++G G G     L T    +V  I   +        +
Sbjct: 49  LTDEXIA-----LLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR 103

Query: 88  DISSQHPNRLEIIQDDALKVDFEK 111
             ++   NR+     DA  + FE 
Sbjct: 104 ATAAGLANRVTFSYADAXDLPFED 127


>gi|167040700|ref|YP_001663685.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X514]
 gi|300914741|ref|ZP_07132057.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X561]
 gi|307724025|ref|YP_003903776.1| 50S ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X513]
 gi|226710125|sp|B0K3X8|PRMA_THEPX RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166854940|gb|ABY93349.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X514]
 gi|300889676|gb|EFK84822.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X561]
 gi|307581086|gb|ADN54485.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X513]
          Length = 308

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHP 94
           L+ I      +    V ++G G G L+     LGA++V   + D+    + +      + 
Sbjct: 167 LEDIV-----MPESIVFDVGCGSGILSITSSKLGAKEVYAADIDEVSVEVARQNVELNNL 221

Query: 95  NRLEIIQDDAL 105
             +++ + D L
Sbjct: 222 QNVKVFKSDLL 232


>gi|82751718|ref|YP_417459.1| hypothetical protein SAB2001c [Staphylococcus aureus RF122]
 gi|82657249|emb|CAI81690.1| conserved hypothetical protein [Staphylococcus aureus RF122]
 gi|298695391|gb|ADI98613.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|323439334|gb|EGA97058.1| HemK family modification methylase [Staphylococcus aureus O11]
 gi|323442457|gb|EGB00086.1| HemK family modification methylase [Staphylococcus aureus O46]
          Length = 278

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 107 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 166

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
           ALK   ++   ++    +I+N PY
Sbjct: 167 ALKPLIKEGIKLNG---LISNPPY 187


>gi|82751181|ref|YP_416922.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           RF122]
 gi|123547851|sp|Q2YT49|PRMA_STAAB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|82656712|emb|CAI81139.1| probable methyltransferase [Staphylococcus aureus RF122]
          Length = 312

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   +VI++G G G L+     +G +++  ++ D+    + K+   ++     +E +  
Sbjct: 171 VLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKDETEKF 240


>gi|57651971|ref|YP_186475.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus COL]
 gi|81859578|sp|Q5HFI2|PRMA_STAAC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|57286157|gb|AAW38251.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus COL]
          Length = 312

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   +VI++G G G L+     +G +++  ++ D+    + K+   ++     +E +  
Sbjct: 171 VLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKDETEKF 240


>gi|21283259|ref|NP_646347.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486413|ref|YP_043634.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|87160836|ref|YP_494233.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195387|ref|YP_500191.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151221693|ref|YP_001332515.1| ribosomal protein L11 methylase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509806|ref|YP_001575465.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221140002|ref|ZP_03564495.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|258450593|ref|ZP_05698655.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A5948]
 gi|262049151|ref|ZP_06022028.1| hypothetical protein SAD30_0308 [Staphylococcus aureus D30]
 gi|262051238|ref|ZP_06023462.1| hypothetical protein SA930_1669 [Staphylococcus aureus 930918-3]
 gi|282920127|ref|ZP_06327852.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9765]
 gi|284024637|ref|ZP_06379035.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294848609|ref|ZP_06789355.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9754]
 gi|297207703|ref|ZP_06924138.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300911784|ref|ZP_07129227.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304380833|ref|ZP_07363493.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|38605350|sp|Q8NWB0|PRMA_STAAW RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|60390419|sp|Q6G8Y9|PRMA_STAAS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|122539399|sp|Q2FXZ4|PRMA_STAA8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|123485612|sp|Q2FGE5|PRMA_STAA3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|172048910|sp|A6QHC1|PRMA_STAAE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|189037708|sp|A8Z4B7|PRMA_STAAT RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|21204699|dbj|BAB95395.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244856|emb|CAG43317.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87126810|gb|ABD21324.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202945|gb|ABD30755.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150374493|dbj|BAF67753.1| ribosomal protein L11 methylase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368615|gb|ABX29586.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257861751|gb|EEV84550.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A5948]
 gi|259160875|gb|EEW45895.1| hypothetical protein SA930_1669 [Staphylococcus aureus 930918-3]
 gi|259162820|gb|EEW47385.1| hypothetical protein SAD30_0308 [Staphylococcus aureus D30]
 gi|269941068|emb|CBI49452.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594475|gb|EFB99460.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9765]
 gi|294824635|gb|EFG41058.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9754]
 gi|296887720|gb|EFH26618.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300886030|gb|EFK81232.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302751408|gb|ADL65585.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340560|gb|EFM06494.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315198726|gb|EFU29054.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140537|gb|EFW32391.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144074|gb|EFW35843.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314254|gb|AEB88667.1| Ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329728381|gb|EGG64818.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 312

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   +VI++G G G L+     +G +++  ++ D+    + K+   ++     +E +  
Sbjct: 171 VLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKDETEKF 240


>gi|23099421|ref|NP_692887.1| ribosomal protein L11 methyltransferase [Oceanobacillus iheyensis
           HTE831]
 gi|38605313|sp|Q8EPW5|PRMA_OCEIH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|22777650|dbj|BAC13922.1| ribosomal protein L11 methyltransferase [Oceanobacillus iheyensis
           HTE831]
          Length = 315

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           +    G  V+++G G G L+     LGA KV   + D+
Sbjct: 171 AYVKPGDLVMDVGCGSGVLSIAAAKLGADKVNAYDLDE 208


>gi|114567902|ref|YP_755056.1| peptide release factor-glutamine N5-methyltransferase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338837|gb|ABI69685.1| peptide release factor-glutamine N5-methyltransferase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 282

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           E +   +G+ + ++G G G +   L   +   +V   +         ++ +++H   +  
Sbjct: 110 EIAEGKEGLRICDVGTGSGAIAVSLAFYVPTAQVYATDISADALEKARENATRHGVAITF 169

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135
            Q D L        N      I+ANLPY      + 
Sbjct: 170 YQGDLL----FPLLNEEPFDIIVANLPYIGSKEFIL 201


>gi|69249627|ref|ZP_00605025.1| Modification methylase HemK [Enterococcus faecium DO]
 gi|257880057|ref|ZP_05659710.1| modification methylase HemK [Enterococcus faecium 1,230,933]
 gi|257882293|ref|ZP_05661946.1| modification methylase HemK [Enterococcus faecium 1,231,502]
 gi|257891148|ref|ZP_05670801.1| modification methylase HemK [Enterococcus faecium 1,231,410]
 gi|257893962|ref|ZP_05673615.1| modification methylase HemK [Enterococcus faecium 1,231,408]
 gi|68194106|gb|EAN08646.1| Modification methylase HemK [Enterococcus faecium DO]
 gi|257814285|gb|EEV43043.1| modification methylase HemK [Enterococcus faecium 1,230,933]
 gi|257817951|gb|EEV45279.1| modification methylase HemK [Enterococcus faecium 1,231,502]
 gi|257827508|gb|EEV54134.1| modification methylase HemK [Enterococcus faecium 1,231,410]
 gi|257830341|gb|EEV56948.1| modification methylase HemK [Enterococcus faecium 1,231,408]
          Length = 290

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 51  VIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           VI+IG G G +   L        +  ++  ++   + K+ + +   ++     D L    
Sbjct: 127 VIDIGTGTGAIAISLKAARKNWHISAVDLSEEALEVAKENAQKEGTKISFYHGDTLGPVM 186

Query: 110 EKFFNISSPIRIIANLPY 127
           ++ F++     II+N PY
Sbjct: 187 DQQFDV-----IISNPPY 199


>gi|15924568|ref|NP_372102.1| methyltransferase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927158|ref|NP_374691.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus N315]
 gi|148268062|ref|YP_001247005.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394130|ref|YP_001316805.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156979896|ref|YP_001442155.1| hypothetical protein SAHV_1565 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253316053|ref|ZP_04839266.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253732231|ref|ZP_04866396.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|255006364|ref|ZP_05144965.2| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257793654|ref|ZP_05642633.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9781]
 gi|258411046|ref|ZP_05681326.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9763]
 gi|258420150|ref|ZP_05683105.1| LSU ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9719]
 gi|258437410|ref|ZP_05689394.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9299]
 gi|258443616|ref|ZP_05691955.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A8115]
 gi|258448737|ref|ZP_05696849.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A6224]
 gi|258453554|ref|ZP_05701532.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A5937]
 gi|269203206|ref|YP_003282475.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893079|ref|ZP_06301313.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A8117]
 gi|282928211|ref|ZP_06335816.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A10102]
 gi|295406701|ref|ZP_06816506.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A8819]
 gi|296275800|ref|ZP_06858307.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297245717|ref|ZP_06929582.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A8796]
 gi|60392929|sp|P0A0P3|PRMA_STAAM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|60392930|sp|P0A0P4|PRMA_STAAN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|60392931|sp|P0A0P5|PRMA_STAAU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223491|sp|A7X2X9|PRMA_STAA1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|189037706|sp|A6U250|PRMA_STAA2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|189037707|sp|A5ITA6|PRMA_STAA9 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|487331|dbj|BAA06361.1| ORF35 [Staphylococcus aureus]
 gi|13701376|dbj|BAB42670.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247349|dbj|BAB57740.1| Ribosomal protein L11 methylase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|147741131|gb|ABQ49429.1| LSU ribosomal protein L11P methyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946582|gb|ABR52518.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156722031|dbj|BAF78448.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253724020|gb|EES92749.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|257787626|gb|EEV25966.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9781]
 gi|257840196|gb|EEV64660.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9763]
 gi|257843861|gb|EEV68255.1| LSU ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9719]
 gi|257848615|gb|EEV72603.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A9299]
 gi|257851022|gb|EEV74965.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A8115]
 gi|257858015|gb|EEV80904.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A6224]
 gi|257864285|gb|EEV87035.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A5937]
 gi|262075496|gb|ACY11469.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590018|gb|EFB95100.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A10102]
 gi|282764397|gb|EFC04523.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A8117]
 gi|285817260|gb|ADC37747.1| Ribosomal protein L11 methyltransferase [Staphylococcus aureus
           04-02981]
 gi|294968448|gb|EFG44472.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A8819]
 gi|297177368|gb|EFH36620.1| 50S ribosomal protein L11 methyltransferase [Staphylococcus aureus
           A8796]
 gi|312829966|emb|CBX34808.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|329727182|gb|EGG63638.1| ribosomal protein L11 methyltransferase [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 312

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102
            L   +VI++G G G L+     +G +++  ++ D+    + K+   ++     +E +  
Sbjct: 171 VLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPG 230

Query: 103 DALKVDFEKF 112
           + LK + EKF
Sbjct: 231 NLLKDETEKF 240


>gi|326389862|ref|ZP_08211426.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994130|gb|EGD52558.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 308

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDD 103
            +    V ++G G G L+     LGA++V   + D+    + +      +   +++ + D
Sbjct: 171 VIPERIVFDVGCGSGILSIASSKLGAKEVYAADIDEVSVEVARQNVELNNLQNVKVFKSD 230

Query: 104 AL 105
            L
Sbjct: 231 LL 232


>gi|307728376|ref|YP_003905600.1| methyltransferase [Burkholderia sp. CCGE1003]
 gi|307582911|gb|ADN56309.1| methyltransferase [Burkholderia sp. CCGE1003]
          Length = 204

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL-EIIQDDA 104
           LDG   +++ AG G L     + GA +V+++E++ +    L+    +   R+ EI + DA
Sbjct: 61  LDGERCLDLFAGSGALGFEAASRGAARVLMVERNARAAAQLRANQQRLSARVIEIAEADA 120

Query: 105 LKV 107
           L++
Sbjct: 121 LRL 123


>gi|288919369|ref|ZP_06413703.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. EUN1f]
 gi|288349258|gb|EFC83501.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Frankia
           sp. EUN1f]
          Length = 408

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 41  ESSGSLDGITVIEIGAG--PGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHPNRL 97
           E +    G+ V+EIG+G     L Q L+  G   V  ++ DQ+     +  + +   + +
Sbjct: 89  EQAELEPGMRVLEIGSGGYNAALIQELVG-GGGSVTSVDIDQEIVSRARACLDAAGYHGV 147

Query: 98  EIIQDDA 104
           E++  DA
Sbjct: 148 EVVAADA 154


>gi|262191455|ref|ZP_06049641.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio cholerae CT
           5369-93]
 gi|262032650|gb|EEY51202.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio cholerae CT
           5369-93]
          Length = 413

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHP 94
           +++ +         V+EIG G G +   +      KV      ++ +   +    +    
Sbjct: 186 QRLCDQLQLKPTDHVLEIGTGWGAMAIYMAQHYGCKVTTTTISEEQYAYAQQKITALGLN 245

Query: 95  NRLEIIQDD 103
           N++ +++ D
Sbjct: 246 NQITLLKQD 254


>gi|260892044|ref|YP_003238141.1| methyltransferase [Ammonifex degensii KC4]
 gi|260864185|gb|ACX51291.1| methyltransferase [Ammonifex degensii KC4]
          Length = 189

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEII 100
           +  + G   +++ AG G +    L+ GA+  + +E+D +   ++++   +    NR  + 
Sbjct: 37  ASQVPGSRFLDLFAGTGGVGIEALSRGAKFAVFVERDPRAVKLIRENLERTGLSNRARVY 96

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYN 128
             D L +             +  + PY 
Sbjct: 97  GRDVLSLLPYLARKKERFDLVYIDPPYQ 124


>gi|260466512|ref|ZP_05812701.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259029661|gb|EEW30948.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 250

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           + + I ++  ++ G  V+++GAG G +       GAR VI  E D+     L   ++ + 
Sbjct: 83  LARYILDNPSTVTGRRVLDLGAGSGIVGIAAAKAGARTVIAAEIDRNGVAALTLNAAANG 142

Query: 95  NRLEIIQDDALK 106
             + ++ DD  K
Sbjct: 143 VAITVVGDDVTK 154


>gi|237745651|ref|ZP_04576131.1| cyclopropane-fatty-acyl-phospholipid synthase [Oxalobacter
           formigenes HOxBLS]
 gi|229377002|gb|EEO27093.1| cyclopropane-fatty-acyl-phospholipid synthase [Oxalobacter
           formigenes HOxBLS]
          Length = 407

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--H 93
           +  I        G  +++IG G G L           V+ I   +  + + +    +   
Sbjct: 161 IDHILTKIRVRPGDRLLDIGCGWGALAIRAAEKYGANVVGITLSKNQYELARQRVREKGL 220

Query: 94  PNRLEIIQDD 103
            ++++I   D
Sbjct: 221 EDKIDIRIQD 230


>gi|221638554|ref|YP_002524816.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacter
           sphaeroides KD131]
 gi|221159335|gb|ACM00315.1| Cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacter
           sphaeroides KD131]
          Length = 403

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-----DQQFFPILKDISS 91
             + +  G+  G  V+EIG G G   +        +V  +       D   + + +   +
Sbjct: 176 ASMVDRIGAKPGEHVLEIGCGWGGFAEYAARERGLRVTGLTISQAQHD---YAVERIARA 232

Query: 92  QHPNRLEIIQDD 103
              +R+EI   D
Sbjct: 233 GLSDRVEIRLQD 244


>gi|120435027|ref|YP_860713.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Gramella
           forsetii KT0803]
 gi|209573185|sp|A0LZ51|PIMT_GRAFK RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|117577177|emb|CAL65646.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Gramella
           forsetii KT0803]
          Length = 213

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           E      G  V+E+G G G  T +L  LGA KV  IE+ ++ +   K   S+   R
Sbjct: 74  ELLEIKKGEKVLEVGTGSGYQTAVLCLLGA-KVYSIERQRELYKKTKSFLSKLGYR 128


>gi|94269874|ref|ZP_01291588.1| Methyltransferase small:Ribosomal L11 methyltransferase [delta
           proteobacterium MLMS-1]
 gi|93451037|gb|EAT01998.1| Methyltransferase small:Ribosomal L11 methyltransferase [delta
           proteobacterium MLMS-1]
          Length = 360

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           G     TV+++G G G L       G  +V+  + D Q   + +D  +   N+L I
Sbjct: 159 GQKPPATVLDVGCGTGILAMAAALWGCPRVVATDNDPQAVAVARDNFAA--NQLTI 212


>gi|94265594|ref|ZP_01289338.1| Ribosomal protein L11 methyltransferase [delta proteobacterium
           MLMS-1]
 gi|93453873|gb|EAT04231.1| Ribosomal protein L11 methyltransferase [delta proteobacterium
           MLMS-1]
          Length = 310

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           G     TV+++G G G L       G  +V+  + D Q   + +D  +   N+L I
Sbjct: 159 GQKPPATVLDVGCGTGILAMAAALWGCPRVVATDNDPQAVAVARDNFAA--NQLTI 212


>gi|91788765|ref|YP_549717.1| tRNA (guanine-N(7)-)-methyltransferase [Polaromonas sp. JS666]
 gi|122967670|sp|Q129H3|TRMB_POLSJ RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|91697990|gb|ABE44819.1| tRNA (guanine-N(7)-)-methyltransferase [Polaromonas sp. JS666]
          Length = 246

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 50/153 (32%), Gaps = 22/153 (14%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHPNRLE 98
            ++      T++EIG G G  T  +  L   K  +           +LK I  Q    + 
Sbjct: 63  AAAFGRVAPTILEIGFGMGEATAHIAALSPDKNFLCCEVHTPGVGALLKRIQEQTLGNIR 122

Query: 99  IIQDDALKV----------DFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--------- 139
           I+Q DA++V          D    F      +   N    I   L+    +         
Sbjct: 123 ILQHDAVEVIDNMLPAGSLDGVHIFFPDPWHKKKHNKRRLIQAPLIAKLAARLKPGGYLH 182

Query: 140 -ADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171
            A  W P+ E +  +   E   + TA  +   Y
Sbjct: 183 CATDWQPYAEQILEVLSAEALLKNTADASGGGY 215


>gi|11497821|ref|NP_069043.1| hypothetical protein AF0205 [Archaeoglobus fulgidus DSM 4304]
 gi|2650438|gb|AAB91027.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 204

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 53/155 (34%), Gaps = 16/155 (10%)

Query: 33  LNILKKIAESSGSLDG-ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
            ++   IA ++        +I++G G G L  +  +L     + ++ D +   I +D ++
Sbjct: 30  PSLAAFIATTAELNGDLDLIIDLGCGTGIL-AIACSLLGHYSVGVDLDVEALKIARDNAA 88

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--WISADTWPPFWES 149
           +       ++ D ++ +  K F     +  + N P+ I  +       + A        +
Sbjct: 89  ELG-----VEADFVRSEVSK-FRCKRKVTTVMNPPFGIQRKHADRPFLLKAFEISKVIYT 142

Query: 150 LTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184
           +          +++ +          V   W    
Sbjct: 143 VHSAGSSNFVRKLSEEHGFK------VTYQWNFSI 171


>gi|126461587|ref|YP_001042701.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103251|gb|ABN75929.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 403

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-----DQQFFPILKDISS 91
             + +  G+  G  V+EIG G G   +        +V  +       D   + + +   +
Sbjct: 176 ASMVDRIGAKPGEHVLEIGCGWGGFAEYAARERGLRVTGLTISQAQHD---YAVERIARA 232

Query: 92  QHPNRLEIIQDD 103
              +R+EI   D
Sbjct: 233 GLSDRVEIRLQD 244


>gi|167037800|ref|YP_001665378.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116219|ref|YP_004186378.1| 50S ribosomal protein L11 methyltransferase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226710124|sp|B0KA79|PRMA_THEP3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166856634|gb|ABY95042.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929310|gb|ADV79995.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 308

 Score = 35.6 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHP 94
           L+ I      +    V ++G G G L+     LGA++V   + D+    + +      + 
Sbjct: 167 LEDIV-----MPESIVFDVGCGSGILSITSSKLGAKEVYAADIDEVSVEVARQNVELNNL 221

Query: 95  NRLEIIQDDAL 105
             +++ + D L
Sbjct: 222 QNVKVFKSDLL 232


>gi|323139606|ref|ZP_08074650.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylocystis sp.
           ATCC 49242]
 gi|322395156|gb|EFX97713.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylocystis sp.
           ATCC 49242]
          Length = 343

 Score = 35.6 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRL 97
              +   DG +++E+G G G+L+  +      AR   V     Q   I  +I+ Q    L
Sbjct: 109 VRHADLADGQSILELGCGWGSLSLSMAQTFPKARITAVSNSSSQRAHIETEIARQGLANL 168

Query: 98  EIIQDDALKVDFEKFFN 114
            +I  D      E  F+
Sbjct: 169 RVITADMNDFRTEGPFD 185


>gi|312279172|gb|ADQ63829.1| Adenine-specific methyltransferase [Streptococcus thermophilus
           ND03]
          Length = 318

 Score = 35.6 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           ++EIG+G GNL + LL    + +  + +E D     +   I+    +    IQ DA++  
Sbjct: 113 ILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSVAVYIQGDAVRPH 172

Query: 109 FEKFFNISSPIRIIANLPYN-IGTRL 133
             K  N+      I   P + I +R 
Sbjct: 173 ILKESNVIISDLPIGYYPNDEIASRF 198


>gi|291563951|emb|CBL42767.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [butyrate-producing bacterium SS3/4]
          Length = 318

 Score = 35.6 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQ 101
              G+ V+++G G G L    L LGA  V   + D+     + +  + +     +  +IQ
Sbjct: 170 VKPGVKVLDLGTGSGILGIAALKLGAEYVFGTDLDENAITAVHENLAANDIPEEKFGVIQ 229

Query: 102 DDA 104
            + 
Sbjct: 230 GNI 232


>gi|239906792|ref|YP_002953533.1| protein-L-isoaspartate O-methyltransferase [Desulfovibrio
           magneticus RS-1]
 gi|239796658|dbj|BAH75647.1| protein-L-isoaspartate O-methyltransferase [Desulfovibrio
           magneticus RS-1]
          Length = 235

 Score = 35.6 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++  + E      G  V+EIG G G    +L  LGA +V  +E+ +  +   +     
Sbjct: 83  PYVVAWMTELLEVAPGHKVLEIGTGSGYQAAVLAELGA-EVYTVERIKPLYEQARARL-- 139

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
                     DAL+ D  +       +      P++
Sbjct: 140 ----------DALRYDRVQLKLDDGTLGWPEKAPFD 165


>gi|227540728|ref|ZP_03970777.1| tRNA (guanine-N(7))-methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227183485|gb|EEI64457.1| tRNA (guanine-N(7))-methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 242

 Score = 35.6 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEK-DQQFFPILK 87
           L D  I   I E  G  D  T++EIG+G G  T  +  L     +I +E        +L 
Sbjct: 50  LADEEI--DIEEWFGRKDHPTILEIGSGTGTSTAAMAPLEPSYNIIAVEIYKPGLAKLLG 107

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFN 114
            I  +    + +++ D ++V      +
Sbjct: 108 AIVREDIPNIRMVRGDGIEVLNRMIPD 134


>gi|212275358|ref|NP_001130238.1| hypothetical protein LOC100191332 [Zea mays]
 gi|194688642|gb|ACF78405.1| unknown [Zea mays]
          Length = 176

 Score = 35.6 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 29/68 (42%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            S   + G  V + G G G L      L A  V+ I+ D Q   + ++ ++     ++++
Sbjct: 7   NSFNDITGKVVADFGCGCGTLAVASALLDAEHVLGIDIDPQSLELAQENAADLELDIDLV 66

Query: 101 QDDALKVD 108
             D   ++
Sbjct: 67  WSDIKNLN 74


>gi|167647637|ref|YP_001685300.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31]
 gi|263445765|sp|B0T839|RSMH_CAUSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167350067|gb|ABZ72802.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31]
          Length = 322

 Score = 35.6 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             +  S  G  VI+   G G  T+ +L  GA  V   ++D           S    R  +
Sbjct: 24  VAALASGPGDMVIDGTFGAGGYTRAILATGA-SVTAFDRDP-SVQRFAAEFSATDGRFRL 81

Query: 100 IQD 102
           IQD
Sbjct: 82  IQD 84


>gi|86748671|ref|YP_485167.1| NodS [Rhodopseudomonas palustris HaA2]
 gi|86571699|gb|ABD06256.1| NodS [Rhodopseudomonas palustris HaA2]
          Length = 283

 Score = 35.6 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
              G+ V+EIG G G+    L   GAR V  I+   ++    K ++     R+  ++ D 
Sbjct: 71  VRPGLRVLEIGCGIGSDLHWLALHGAR-VTGIDVKSEWTTAAKLLTKHVSARIAPVEVDI 129

Query: 105 LKVDFEKFFNISSPIRIIANLPYNI 129
            +++     +    +  + +  +++
Sbjct: 130 QRINLLDLPDAQYDLIYMKDTFHHL 154


>gi|55821830|ref|YP_140272.1| hypothetical protein stu1858 [Streptococcus thermophilus LMG 18311]
 gi|55823746|ref|YP_142187.1| hypothetical protein str1858 [Streptococcus thermophilus CNRZ1066]
 gi|55737815|gb|AAV61457.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|55739731|gb|AAV63372.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 318

 Score = 35.6 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           ++EIG+G GNL + LL    + +  + +E D     +   I+    +    IQ DA++  
Sbjct: 113 ILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSVAVYIQGDAVRPH 172

Query: 109 FEKFFNISSPIRIIANLPYN-IGTRL 133
             K  N+      I   P + I +R 
Sbjct: 173 ILKESNVIISDLPIGYYPNDEIASRF 198


>gi|49484341|ref|YP_041565.1| hypothetical protein SAR2205 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257426256|ref|ZP_05602671.1| modification methylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428914|ref|ZP_05605308.1| modification methylase HemK family protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431523|ref|ZP_05607896.1| modification methylase HemK family protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434232|ref|ZP_05610582.1| modification methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257437145|ref|ZP_05613185.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904786|ref|ZP_06312660.1| N5 glutamine methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906461|ref|ZP_06314312.1| protein-glutamine-N5 methyltransferase release factor-specific
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909430|ref|ZP_06317245.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911682|ref|ZP_06319481.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914966|ref|ZP_06322746.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus M899]
 gi|282920295|ref|ZP_06328019.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282925506|ref|ZP_06333160.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus C101]
 gi|283958897|ref|ZP_06376342.1| N5 glutamine methyltransferase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293509034|ref|ZP_06667821.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510949|ref|ZP_06669648.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus M809]
 gi|293547551|ref|ZP_06672226.1| N5 glutamine methyltransferase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|297589816|ref|ZP_06948456.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|49242470|emb|CAG41186.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257270961|gb|EEV03134.1| modification methylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274256|gb|EEV05773.1| modification methylase HemK family protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277764|gb|EEV08434.1| modification methylase HemK family protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280871|gb|EEV11016.1| modification methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283538|gb|EEV13665.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus M876]
 gi|282312907|gb|EFB43308.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316155|gb|EFB46536.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282321169|gb|EFB51500.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324447|gb|EFB54760.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326700|gb|EFB56998.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330411|gb|EFB59929.1| protein-glutamine-N5 methyltransferase release factor-specific
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594819|gb|EFB99796.1| N5 glutamine methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789615|gb|EFC28438.1| N5 glutamine methyltransferase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919671|gb|EFD96744.1| N5 glutamine methyltransferase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291094738|gb|EFE25010.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466234|gb|EFF08761.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus subsp. aureus M809]
 gi|297576944|gb|EFH95658.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312437465|gb|ADQ76536.1| protein-(glutamine-N5) methyltransferase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315193282|gb|EFU23680.1| hypothetical protein CGSSa00_02196 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 278

 Score = 35.6 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 107 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 166

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
           ALK   ++   ++    +I+N PY
Sbjct: 167 ALKPLIKEGIKLNG---LISNPPY 187


>gi|320103830|ref|YP_004179421.1| modification methylase NspV [Isosphaera pallida ATCC 43644]
 gi|319751112|gb|ADV62872.1| modification methylase NspV [Isosphaera pallida ATCC 43644]
          Length = 514

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKV-IVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKV 107
           +++E   G GNL +  L        + +E +          ++ + P R E+   DA ++
Sbjct: 29  SILEPTCGRGNLLRAALNAFPNAAALGVELNSAHLETCASVLTREFPGRFELRCQDAFQL 88

Query: 108 DFEK-FFNISSPIRIIANLPYNIGTRLLFNWISADTWPP 145
           D++     +  P+ ++ N P+   T      + +   PP
Sbjct: 89  DWDAVIARLEPPVLVLGNPPWV--TNAALGVLKSGNLPP 125


>gi|317123326|ref|YP_004097438.1| Cyclopropane-fatty-acyl-phospholipid synthase [Intrasporangium
           calvum DSM 43043]
 gi|315587414|gb|ADU46711.1| Cyclopropane-fatty-acyl-phospholipid synthase [Intrasporangium
           calvum DSM 43043]
          Length = 436

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           +  I + +   DG TV+EIG G G L       GA    
Sbjct: 190 VHAILDEARVGDGTTVLEIGTGWGTLAIEAARRGAHVTT 228


>gi|314937738|ref|ZP_07845060.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133a04]
 gi|314942364|ref|ZP_07849211.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133C]
 gi|314952117|ref|ZP_07855136.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133A]
 gi|314992372|ref|ZP_07857804.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133B]
 gi|314997441|ref|ZP_07862388.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133a01]
 gi|313588450|gb|EFR67295.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133a01]
 gi|313593097|gb|EFR71942.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133B]
 gi|313595736|gb|EFR74581.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133A]
 gi|313598877|gb|EFR77722.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133C]
 gi|313642876|gb|EFS07456.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133a04]
          Length = 279

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 51  VIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           VI+IG G G +   L        +  ++  ++   + K+ + +   ++     D L    
Sbjct: 116 VIDIGTGTGAIAISLKAARKNWHISAVDLSEEALEVAKENAQKEGTKISFYHGDTLGPVM 175

Query: 110 EKFFNISSPIRIIANLPY 127
           ++ F++     II+N PY
Sbjct: 176 DQQFDV-----IISNPPY 188


>gi|299749574|ref|XP_002911393.1| chaperone [Coprinopsis cinerea okayama7#130]
 gi|298408499|gb|EFI27899.1| chaperone [Coprinopsis cinerea okayama7#130]
          Length = 549

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           +    ++    D  T++E+G+G G L   L   G    ++   D     +
Sbjct: 333 VDWAVDNIPPTDNPTILEVGSGNGTLLFGLHEAGYGPTLLAGIDYSMGAV 382


>gi|258614611|ref|ZP_05712381.1| hemK protein [Enterococcus faecium DO]
 gi|260560330|ref|ZP_05832506.1| modification methylase HemK [Enterococcus faecium C68]
 gi|293563061|ref|ZP_06677527.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1162]
 gi|294623634|ref|ZP_06702472.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium U0317]
 gi|314947686|ref|ZP_07851095.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0082]
 gi|260073675|gb|EEW62001.1| modification methylase HemK [Enterococcus faecium C68]
 gi|291596960|gb|EFF28173.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium U0317]
 gi|291604975|gb|EFF34443.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1162]
 gi|313645927|gb|EFS10507.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0082]
          Length = 279

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 51  VIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           VI+IG G G +   L        +  ++  ++   + K+ + +   ++     D L    
Sbjct: 116 VIDIGTGTGAIAISLKAARKNWHISAVDLSEEALEVAKENAQKEGTKISFYHGDTLGPVM 175

Query: 110 EKFFNISSPIRIIANLPY 127
           ++ F++     II+N PY
Sbjct: 176 DQQFDV-----IISNPPY 188


>gi|256752133|ref|ZP_05492999.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748947|gb|EEU61985.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 308

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHP 94
           L+ I      +    V ++G G G L+     LGA++V   + D+    + +      + 
Sbjct: 167 LEDIV-----MPESIVFDVGCGSGILSITSSKLGAKEVYAADIDEVSVEVARQNVELNNL 221

Query: 95  NRLEIIQDDAL 105
             +++ + D L
Sbjct: 222 QNVKVFKSDLL 232


>gi|238892858|ref|YP_002917592.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545174|dbj|BAH61525.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 406

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQH 93
            ++ +      G  ++EIG G G L +        +V      +   ++    +   +  
Sbjct: 179 ARLCDQLALTPGDHLLEIGTGWGALAEYAARHYGCRVTTTTLSREQHRWATE-RMARAGL 237

Query: 94  PNRLEIIQDD 103
            +R+E++  D
Sbjct: 238 QDRVEVLLCD 247


>gi|268678689|ref|YP_003303120.1| protein-L-isoaspartate O-methyltransferase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616720|gb|ACZ11085.1| protein-L-isoaspartate O-methyltransferase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 219

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPIL 86
           ++     + K+ E+       +V+EIG G G   L   +L+   R+V  IE+  +     
Sbjct: 67  WISSPLTVAKMTEALTCKGADSVLEIGCGSGYQAL---ILSKLIRRVFTIERIDRLLKEA 123

Query: 87  KDISSQ 92
           K+    
Sbjct: 124 KERFKA 129


>gi|255599096|ref|XP_002537151.1| Cyclopropane-fatty-acyl-phospholipid synthase, putative [Ricinus
           communis]
 gi|223517312|gb|EEF25233.1| Cyclopropane-fatty-acyl-phospholipid synthase, putative [Ricinus
           communis]
          Length = 279

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +++A       G +V+EIG G G   Q        KV  +   Q+     +    +    
Sbjct: 180 ERLAALIDLRPGHSVVEIGCGWGGFAQFAAAKIGAKVTAVTISQEQHDFARRRIFEAGLA 239

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANL 125
             +   D   +D+         +  I  L
Sbjct: 240 ERV---DIRLLDYRDLTGQFDRVASIEML 265


>gi|167465651|ref|ZP_02330740.1| possible 16S rRNA methyltransferase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 171

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 40  AESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNR 96
             +        ++++G G G   LT   L   A  V +I+ +++   + K +  + H + 
Sbjct: 50  ISAMELPKDARILDVGCGYGPIGLTAAKLC-PAGHVTLIDINERAVELAKLNARNNHISN 108

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           + I+Q +  +   ++ F++     I+ N P   G +++    S
Sbjct: 109 VTILQSNLFEHVRDQKFDV-----ILTNPPIRAGKQVVHQIFS 146


>gi|152973200|ref|YP_001338346.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150958049|gb|ABR80079.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 406

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQH 93
            ++ +      G  ++EIG G G L +        +V      +   ++    +   +  
Sbjct: 179 ARLCDQLALTPGDHLLEIGTGWGALAEYAARHYGCRVTTTTLSREQHRWATE-RMARAGL 237

Query: 94  PNRLEIIQDD 103
            +R+E++  D
Sbjct: 238 QDRVEVLLCD 247


>gi|116515053|ref|YP_802682.1| hypothetical protein BCc_112 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256907|gb|ABJ90589.1| N5-glutamine methyltransferase, release factors activity modulator
           [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 277

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
           +++E+G G G ++  L +  + ++ +I  D   + +L  I+  + ++L +     +  ++
Sbjct: 112 SILELGTGSGAISLALASENS-QLKIIGTDISLYALL--IAKYNADKLNLNNVKFIYSNW 168

Query: 110 EKFFNISSPIRIIANLPY 127
            +   I     I+ N PY
Sbjct: 169 FQNIPIKKFHIIVCNPPY 186


>gi|45360587|ref|NP_988966.1| protein arginine methyltransferase 3 [Xenopus (Silurana)
           tropicalis]
 gi|38174441|gb|AAH61427.1| heterogeneous nuclear ribonucleoprotein methyltransferase-like 3
           (S. cerevisiae) [Xenopus (Silurana) tropicalis]
          Length = 519

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE--------KDQQFFPILKDISSQHPN 95
                 TV+++G G G L+      GA+KVI ++         D      L+D  S    
Sbjct: 240 HIFKDKTVLDVGCGTGILSMFAAKAGAKKVIGVDQSDIIYQAMDIVRLNGLEDTVSLVKG 299

Query: 96  RLEIIQDDALKVD 108
           R+E +     KVD
Sbjct: 300 RVEDVDLPVEKVD 312


>gi|305664951|ref|YP_003861238.1| hypothetical protein FB2170_01567 [Maribacter sp. HTCC2170]
 gi|88707781|gb|EAR00021.1| hypothetical protein FB2170_01567 [Maribacter sp. HTCC2170]
          Length = 205

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 6/118 (5%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
             S G      +I+IG G   L   LL  G   + V++   +    +K+   +  N++  
Sbjct: 35  IHSFGLNKTSKIIDIGGGDSKLVDHLLDEGFENITVLDISAKSLEKVKNRLGEKANKVNW 94

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--WISADTWPPFWESLTLLFQ 155
           I  D  + +    F++           + + +        I+A      + ++    Q
Sbjct: 95  IVSDITEFESNMTFDVWHDRA----TFHFLTSPDQIKKYMITARKSVKGFLTIGTFSQ 148


>gi|313892229|ref|ZP_07825822.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
           microaerophilus UPII 345-E]
 gi|313119367|gb|EFR42566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
           microaerophilus UPII 345-E]
          Length = 545

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           +K  + +      TVI+   G G ++  L    A+ VI IE  +      K+ + ++  +
Sbjct: 295 EKALDFANLFGDETVIDAYCGTGTISLYLA-QKAKHVIGIEIIKDAIENAKENAKRNKIK 353

Query: 97  -LEIIQDDALKVDFE 110
            +E    D  K   E
Sbjct: 354 NVEFHAADVAKYLPE 368


>gi|312622536|ref|YP_004024149.1| methyltransferase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203003|gb|ADQ46330.1| methyltransferase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 184

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDD---ALKVDFE 110
           AG GN+    L+ G R+V  +EKD +   ++K+         R  II+ D    LK    
Sbjct: 51  AGTGNVGIEFLSRGVREVTFVEKDVRCINLIKENLKNLDLLKRARIIKGDVIRFLKSTNC 110

Query: 111 KFFNI 115
             F+I
Sbjct: 111 PVFDI 115


>gi|288937395|ref|YP_003441454.1| cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella variicola
           At-22]
 gi|288892104|gb|ADC60422.1| Cyclopropane-fatty-acyl-phospholipid synthase [Klebsiella variicola
           At-22]
          Length = 406

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQH 93
            ++ +      G  ++EIG G G L +        +V      +   ++    +   +  
Sbjct: 179 ARLCDQLALTPGDHLLEIGTGWGALAEYAARHYGCRVTTTTLSREQHRWATE-RMARAGL 237

Query: 94  PNRLEIIQDD 103
            +R+E++  D
Sbjct: 238 QDRVEVLLCD 247


>gi|255531454|ref|YP_003091826.1| protein-L-isoaspartate O-methyltransferase [Pedobacter heparinus
           DSM 2366]
 gi|255344438|gb|ACU03764.1| protein-L-isoaspartate O-methyltransferase [Pedobacter heparinus
           DSM 2366]
          Length = 218

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
           E      G  V+EIG G G  T +L+ LGA  V  IE+
Sbjct: 78  ELLHIKKGDKVLEIGTGSGYQTCILMELGAN-VYTIER 114


>gi|209526659|ref|ZP_03275183.1| sulfotransferase [Arthrospira maxima CS-328]
 gi|209492895|gb|EDZ93226.1| sulfotransferase [Arthrospira maxima CS-328]
          Length = 528

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 37  KKIAE----SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
           ++I E    +        V+EIG G G  T  LL     ++   +   +     +D   +
Sbjct: 335 EQIIENTFIAPYIQKQHRVLEIGIG-GGKTAALLLKYCDRLTCADISHEMLKATRDRLGE 393

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWES 149
             +R+  ++ D + +D  +    S  +    +   +I  R +FN+++    PP  + 
Sbjct: 394 --DRVNYVKLDGITLD--RIPPASLDVCFCYDTMVHIEPRDIFNYLT--RIPPLLKG 444


>gi|110347387|ref|YP_666203.1| putative methylase/helicase [Mesorhizobium sp. BNC1]
 gi|110287563|gb|ABG65620.1| putative methylase/helicase [Chelativorans sp. BNC1]
          Length = 684

 Score = 35.6 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            ++G +D   ++E  AG G L        +R++I+ +  +    +LK +  + P    + 
Sbjct: 185 RAAGLMDDDILLEPSAGTGMLAAFGAIARSRRLILNDYAETRADLLKGLFPEAP----VT 240

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
           + DA  +D   F     P  I+ N P++ G 
Sbjct: 241 RFDAAHIDDW-FDAAIRPTVIVMNPPFSAGA 270


>gi|330816546|ref|YP_004360251.1| cysteine synthase [Burkholderia gladioli BSR3]
 gi|327368939|gb|AEA60295.1| cysteine synthase [Burkholderia gladioli BSR3]
          Length = 409

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I++K   +     G+ V+E  +G   +   ++    R    I  D      L+   +Q
Sbjct: 53  KYIIEKALATGQLDPGMPVLETSSGTFAMGIGIVCAEKRIPFHIVSDAAIDARLQARLAQ 112

Query: 93  HPNRLEIIQDDA 104
              R++I+  DA
Sbjct: 113 LGGRVQIVGADA 124


>gi|315604954|ref|ZP_07880010.1| modification methylase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313349|gb|EFU61410.1| modification methylase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 322

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           IEI AG G     L   G   + V+E D      L++   Q      +I+ D +    + 
Sbjct: 6   IEICAGAGGQALGLEQAGFDHLAVVEIDHHACNTLRENRPQW----NVIEGDVVPWIRDH 61

Query: 112 FFNISSPIRIIANLP 126
                    +   +P
Sbjct: 62  AHEYRGVDLVAGGVP 76


>gi|315043644|ref|XP_003171198.1| hypothetical protein MGYG_07197 [Arthroderma gypseum CBS 118893]
 gi|311344987|gb|EFR04190.1| hypothetical protein MGYG_07197 [Arthroderma gypseum CBS 118893]
          Length = 2621

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 43   SGSLDGITVIEIGAGPGNLTQMLLT 67
            + S   + ++EIGAG G+LT +LL 
Sbjct: 1475 AHSKTDLNILEIGAGTGSLTAVLLE 1499


>gi|239831766|ref|ZP_04680095.1| Protein-L-isoaspartate O-methyltransferase [Ochrobactrum
           intermedium LMG 3301]
 gi|239824033|gb|EEQ95601.1| Protein-L-isoaspartate O-methyltransferase [Ochrobactrum
           intermedium LMG 3301]
          Length = 222

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 31  LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI-LKDI 89
           +D     +   +     G  V+EIG G G  T  +++  + +V  +E+ ++     L+  
Sbjct: 72  IDEQ--ARAIAALKLEPGHRVLEIGTGSG-FTAAVMSSLSGRVTTVERYRKLCDHALQQF 128

Query: 90  SSQHPNRLEIIQDD 103
            S     + +   D
Sbjct: 129 VSLKRENIMVKHAD 142


>gi|313127358|ref|YP_004037628.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
 gi|312293723|gb|ADQ68183.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
          Length = 267

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 50  TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109
            V+++G G G L+++L      +V+ ++ D +   + ++ +      L  +  DA ++ F
Sbjct: 34  RVLDVGCGTGELSRVLDAETPGEVVCLDADPELLRVAREAA-----DLPTVVGDATRLPF 88

Query: 110 EK 111
             
Sbjct: 89  PD 90


>gi|260792094|ref|XP_002591062.1| hypothetical protein BRAFLDRAFT_119070 [Branchiostoma floridae]
 gi|229276262|gb|EEN47073.1| hypothetical protein BRAFLDRAFT_119070 [Branchiostoma floridae]
          Length = 521

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 8/121 (6%)

Query: 40  AESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK--DQQFFPILKDISSQH 93
            +++       +G  V+++GAG G  ++ L       V   E   D              
Sbjct: 296 VDAAMKLLDIREGARVLDVGAGIGGPSRYLAHKSKCHVTASELLPDNHRVGQDLTSRCGM 355

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLL 153
              ++ +  D +  +          +  I  + Y      LF  +     P         
Sbjct: 356 TGSVKHVCGDIITTELGD--QEFDHVMSIQAIYYVEDKPRLFRQLYDSLKPGGTICFEEF 413

Query: 154 F 154
            
Sbjct: 414 C 414


>gi|206575848|ref|YP_002240696.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Klebsiella pneumoniae 342]
 gi|206564906|gb|ACI06682.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Klebsiella pneumoniae 342]
          Length = 406

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ---QFFPILKDISSQH 93
            ++ +      G  ++EIG G G L +        +V      +   ++    +   +  
Sbjct: 179 ARLCDQLALTPGDHLLEIGTGWGALAEYAARHYGCRVTTTTLSREQHRWATE-RMARAGL 237

Query: 94  PNRLEIIQDD 103
            +R+E++  D
Sbjct: 238 QDRVEVLLCD 247


>gi|171318306|ref|ZP_02907466.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia ambifaria MEX-5]
 gi|171096508|gb|EDT41405.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia ambifaria MEX-5]
          Length = 218

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISS 91
             +  ++ +         V+ IGAG G L   L       V  +E D        D + +
Sbjct: 64  PRVEARMLQELAVKKHENVLVIGAGSGYL-AALFAHRTLHVTAVEIDPAIAKFAADNLRN 122

Query: 92  QHPNRLEIIQDD 103
                +E+   D
Sbjct: 123 DGVTNVEVALGD 134


>gi|74318143|ref|YP_315883.1| tRNA (guanine-N(7)-)-methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
 gi|91208062|sp|Q3SH11|TRMB_THIDA RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName:
           Full=tRNA(m7G46)-methyltransferase
 gi|74057638|gb|AAZ98078.1| tRNA (guanine-N(7)-)-methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 227

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 41/143 (28%), Gaps = 29/143 (20%)

Query: 49  ITVIEIGAGPGNLTQMLLTLGARKVIVIEKD--------QQFFPILKDISSQHPNRLEII 100
             V+EIG G G   + L    A      E D             +LK +  +    + +I
Sbjct: 56  PRVLEIGFGMG---EGLAETAASH---PEIDYIGVEVHTPGVGALLKQLGERELGNVRVI 109

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGE 160
           Q DA++V                       T    +    D W         L Q  + E
Sbjct: 110 QHDAVEVLTAMLAP---------------ATLAGIHIFFPDPWHKKRHHKRRLIQAPLVE 154

Query: 161 RITAQKNSPHYGRLSVLTGWRTK 183
            + ++     Y  L+       +
Sbjct: 155 LLASRLAPGGYIHLATDWQDYAE 177


>gi|85859814|ref|YP_462016.1| protein-L-isoaspartate o-methyltransferase [Syntrophus
           aciditrophicus SB]
 gi|123516914|sp|Q2LUT4|PIMT_SYNAS RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|85722905|gb|ABC77848.1| protein-L-isoaspartate o-methyltransferase [Syntrophus
           aciditrophicus SB]
          Length = 218

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + ++        V+EIG G G  T +L  L A +V  IE+        + I  Q
Sbjct: 65  PYIVALMTDALDLKGREKVLEIGTGSGYQTALLAEL-ADQVFSIERIASLANNARRILDQ 123


>gi|83815934|ref|YP_445437.1| SAM-dependent methyltransferase, putative [Salinibacter ruber DSM
           13855]
 gi|83757328|gb|ABC45441.1| predicted SAM-dependent methyltransferase, putative [Salinibacter
           ruber DSM 13855]
          Length = 212

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 30/75 (40%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           AE+        V+E+GAG G     L      +V  ++  +      ++ +     RL+ 
Sbjct: 35  AEAHRLPPESEVVEVGAGEGRTAAWLAREHGHRVTAVDFSETALKTAQERAEAEHLRLDT 94

Query: 100 IQDDALKVDFEKFFN 114
           ++ D      ++ ++
Sbjct: 95  VRADVRTWRPDRQWD 109


>gi|116628538|ref|YP_821157.1| hypothetical protein STER_1835 [Streptococcus thermophilus LMD-9]
 gi|116101815|gb|ABJ66961.1| Adenine-specific DNA methylase [Streptococcus thermophilus LMD-9]
          Length = 318

 Score = 35.6 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGARKV--IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108
           ++EIG+G GNL + LL    + +  + +E D     +   I+    +    IQ DA++  
Sbjct: 113 ILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSVAVYIQGDAVRPH 172

Query: 109 FEKFFNISSPIRIIANLPYN-IGTRL 133
             K  N+      I   P + I +R 
Sbjct: 173 ILKESNVIISDLPIGYYPNDEIASRF 198


>gi|328957458|ref|YP_004374844.1| ribosomal protein L11 methyltransferase [Carnobacterium sp. 17-4]
 gi|328673782|gb|AEB29828.1| ribosomal protein L11 methyltransferase [Carnobacterium sp. 17-4]
          Length = 317

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQD 102
                T++++G G G L+     LGA+ V   + D        D    + +   + +  +
Sbjct: 173 IRGNETILDVGTGSGVLSIASKALGAKHVHAYDLDDVAVKSAMDNIKLNDYAKDVTVEAN 232

Query: 103 DALK 106
           D LK
Sbjct: 233 DLLK 236


>gi|325267944|ref|ZP_08134593.1| type 11 methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324980630|gb|EGC16293.1| type 11 methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 201

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDIS-SQHP 94
           ++I +         ++E+G G G  +  L       +++  +   +     +     +H 
Sbjct: 39  QQIVQRLHLAPHHRILEVGCGAGYFSPTLAQSIPQGRLVAADIQPEMLAYAEKRLRRRHI 98

Query: 95  NRLEIIQDDALKVDFEK 111
             ++    D    DF  
Sbjct: 99  GNVDYYLCDGTHFDFPD 115


>gi|321442013|gb|ADW85421.1| arg methyltransferase [Pollanisus sp. JCR-2011]
          Length = 244

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G  V++IG G G L+      GA KVI +E         + I  +++  + +EI++
Sbjct: 19  HLFKGKVVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIIEANRLDDIIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|311895546|dbj|BAJ27954.1| putative S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Kitasatospora setae KM-6054]
          Length = 322

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 69/198 (34%), Gaps = 19/198 (9%)

Query: 36  LKKIAESSGS---LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91
           L++  ++        G  V++   G G  ++ LLT     ++I +++D +   +  +  +
Sbjct: 15  LERCLDALAPAISTPGAVVVDATLGLGGHSEALLTRFPDVRLIAVDRDPRALELSAERLA 74

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
           +  +R  ++   A+  +  +  +      +   L     + +      AD    + +   
Sbjct: 75  RFGDRATLVH--AVYDEIPRVLDELDVPEVHGVLFDLGVSSM--QLDEADRGFAYSQDAP 130

Query: 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
           L  + +    I+A +    YG              +  +     F + K+ S V+     
Sbjct: 131 LDMRMDQTRGISAAEVLNTYG--------HGDLARILKVYGEERF-AGKIASAVLR-ERE 180

Query: 212 LNPIPCCLESLKKITQEA 229
             P       L ++ + A
Sbjct: 181 REPF-TNSARLVELVRNA 197


>gi|307104856|gb|EFN53108.1| hypothetical protein CHLNCDRAFT_26258 [Chlorella variabilis]
          Length = 324

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 4/125 (3%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH 93
           +  +        G  V+E G G G+LT  L    A   KV   E  +Q   +  +    +
Sbjct: 97  IAMVVAFLELRPGAVVLESGTGSGSLTTSLARAVAPHGKVWTFEFHEQRAQLAAEEFKAN 156

Query: 94  --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
                + + Q D     F +  +  +    +      +        +  D     +    
Sbjct: 157 GLGELVTVAQRDIEASGFPEELHGQADALFLDLPKPYMVVPSAARCVRPDGMFCSFSPCI 216

Query: 152 LLFQK 156
              Q+
Sbjct: 217 EQVQR 221


>gi|303237814|ref|ZP_07324371.1| RNA methyltransferase, RsmD family [Prevotella disiens FB035-09AN]
 gi|302481960|gb|EFL44998.1| RNA methyltransferase, RsmD family [Prevotella disiens FB035-09AN]
          Length = 177

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI-IQDDALKVDFEKFFN 114
           AG G+++  +L+ G ++V+ +E+D+     + +   +      I I+ D  +        
Sbjct: 52  AGTGSISLEMLSRGCKEVVSVEQDRDHARFISECIKKLNAENHILIRGDVFRFLKSCHQK 111

Query: 115 ISSPIRIIANLPYNI 129
                 I A+ PY +
Sbjct: 112 FD---FIFADPPYAL 123


>gi|300705569|ref|YP_003747172.1| s-adenosyl-l-methionine-dependent methyltransferase [Ralstonia
           solanacearum CFBP2957]
 gi|299073233|emb|CBJ44592.1| S-adenosyl-L-methionine-dependent methyltransferase [Ralstonia
           solanacearum CFBP2957]
          Length = 215

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 11/117 (9%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           N L D    + IA         TV+++G G G+L ++L          IE D     +L 
Sbjct: 20  NILADRADFRAIARWIEPRS--TVLDLGCGDGSLLRVLQDELEVLAYGIEIDD--AGVLA 75

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI--GTRLLFNWISADT 142
                    + +IQ + L+     F + S    I++     I    ++L   +    
Sbjct: 76  ATQKD----VHVIQQN-LEGGLALFEDKSFDTVILSQTLQTIHNTAQVLREMLRVGR 127


>gi|302546336|ref|ZP_07298678.1| putative methyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302463954|gb|EFL27047.1| putative methyltransferase [Streptomyces himastatinicus ATCC 53653]
          Length = 201

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 15/144 (10%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +   A++ G L    V+++G GPG +T  L   G   V  ++   +     + +   HP 
Sbjct: 27  IDAFADTVGDLG--PVLDVGCGPGTVTGYLAERG-LDVSGVDLSSRMIENARRL---HPG 80

Query: 96  -RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
            R  +     L +       +     +  NLP +I  ++L ++  A      + + T + 
Sbjct: 81  CRFSVASATDLDLGEASLGGVLGWWSLF-NLPRDILPQVLAHFARALMPGGHFLTATHVG 139

Query: 155 QKEVGERITAQKNSPHYGRLSVLT 178
            ++          +  YG +SV  
Sbjct: 140 DEDAVR-------TEAYGGVSVRW 156


>gi|268680052|ref|YP_003304483.1| modification methylase, HemK family [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618083|gb|ACZ12448.1| modification methylase, HemK family [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 273

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 12/121 (9%)

Query: 35  ILKKIAESSGSLDGI-TVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQ 92
           ++ K  E + +L     ++EIG G G ++ ML L L   K+  ++   +   + +  + +
Sbjct: 97  LVDKAVELAKTLPKEAHIVEIGCGSGIISIMLALMLPDVKITAVDISNEALHVSQKNAVK 156

Query: 93  H--PNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGTRLLFNWISADTWPPFWES 149
           H    R+  +Q   L         +S PI  I++N PY      L   +S +     +  
Sbjct: 157 HGVSKRIAFVQGSYLD-------GVSEPIDMIVSNPPYIANHEALEENLSYEPSLALFGG 209

Query: 150 L 150
           +
Sbjct: 210 V 210


>gi|227496044|ref|ZP_03926355.1| tRNA methyltransferase complex GCD14 subunit [Actinomyces
           urogenitalis DSM 15434]
 gi|226834408|gb|EEH66791.1| tRNA methyltransferase complex GCD14 subunit [Actinomyces
           urogenitalis DSM 15434]
          Length = 341

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILK----DISSQH 93
                   G  V+E G G G LT  LL+    +  ++ +E+   F  I          +H
Sbjct: 101 VALGDIFPGARVLEAGVGSGALTMNLLSAIGESGHLLSVERRHDFAQIAASNVDSWFGRH 160

Query: 94  PNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               ++   D  +V      + S    ++  L
Sbjct: 161 HPAWQLRCGDLSEVTAAHVADDSIDRVVLDML 192


>gi|242811727|ref|XP_002485809.1| polyketide synthase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218714148|gb|EED13571.1| polyketide synthase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 2528

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 47   DGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKD-----QQFFPILKDISSQHPNRLE 98
              + ++EIGAG  ++T  LL       +V+    D       FFP  K+  +++ N + 
Sbjct: 1427 PDMKILEIGAGTASVTLPLLEKIKSDDRVLASRYDFTDISAGFFPAAKERLAEYENVVN 1485


>gi|218508607|ref|ZP_03506485.1| hypothetical protein RetlB5_14051 [Rhizobium etli Brasil 5]
          Length = 248

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 30/68 (44%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +++++A   G   G  ++++G GPG +      L    V  ++ + +     ++ ++   
Sbjct: 12  LIERVAGRIGLRPGDRLLDLGCGPGQIGIAFARLAGTDVTGLDPEPEMLDSAREGAAAAG 71

Query: 95  NRLEIIQD 102
            R E +  
Sbjct: 72  IRAEFVLG 79


>gi|198273954|ref|ZP_03206486.1| hypothetical protein BACPLE_00090 [Bacteroides plebeius DSM 17135]
 gi|198273032|gb|EDY97301.1| hypothetical protein BACPLE_00090 [Bacteroides plebeius DSM 17135]
          Length = 280

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91
             +++ I         + +++IG G G +   L  L    +V   +   +   I      
Sbjct: 97  EELVEWIVSDFREAGQVRILDIGTGSGCIPVSLAQLLPEAQVSSCDVSAEALRIAATNVK 156

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++ +++ +   D LK    +         +++N PY
Sbjct: 157 RYGDKVTLFCADILK----EELPECQVDVLVSNPPY 188


>gi|217977208|ref|YP_002361355.1| methionine biosynthesis protein MetW [Methylocella silvestris BL2]
 gi|217502584|gb|ACK49993.1| methionine biosynthesis protein MetW [Methylocella silvestris BL2]
          Length = 214

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           ++       V+++G G G L ++L          IE  Q+             + L +IQ
Sbjct: 24  AAMVEPNSRVLDVGCGDGALLRLLADEKGVDARGIELSQRGVNY------CVAHGLSVIQ 77

Query: 102 DDALKVDFEKFFNISSPIRIIA 123
            DA   D  ++ + S    I++
Sbjct: 78  GDA-DTDLAEYPDDSFDYVILS 98


>gi|159185056|ref|NP_355082.2| O-methyltransferase [Agrobacterium tumefaciens str. C58]
 gi|159140330|gb|AAK87867.2| O-methyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 221

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
            +         G T++EIG G G NL          K+  ++   +      +  +    
Sbjct: 24  DRTISGLDVPKGGTLLEIGCGTGRNLLLASRRFPDAKLFGLDISAEMLLTASENFAGKAE 83

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG-TRLLFNWIS---ADTWPPFWESLT 151
           R  +   DA      +F       R+   +PY +         I    A   P     + 
Sbjct: 84  RPILRVADATAFRSSEFGQPDGFDRV--MIPYALSMIPDWEKAIEQALAALKPGGSLHIV 141

Query: 152 LLFQKE 157
              Q+E
Sbjct: 142 DFGQQE 147


>gi|119513318|ref|ZP_01632356.1| hypothetical protein N9414_13305 [Nodularia spumigena CCY9414]
 gi|119462025|gb|EAW43024.1| hypothetical protein N9414_13305 [Nodularia spumigena CCY9414]
          Length = 158

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLE 98
           +         +I+IG GPG  T  L +L    +I I+    +   LK   +      ++ 
Sbjct: 33  KLVDLPPHPKIIDIGCGPGFQTLDLASLTNGTIIAIDNHPFYVNELKQKVLQQGLSEKIT 92

Query: 99  IIQDDALKVDFEK 111
           +I  D   +DF  
Sbjct: 93  VINADMFALDFPD 105


>gi|108798177|ref|YP_638374.1| methyltransferase type 11 [Mycobacterium sp. MCS]
 gi|119867273|ref|YP_937225.1| methyltransferase type 11 [Mycobacterium sp. KMS]
 gi|108768596|gb|ABG07318.1| Methyltransferase type 11 [Mycobacterium sp. MCS]
 gi|119693362|gb|ABL90435.1| Methyltransferase type 11 [Mycobacterium sp. KMS]
          Length = 239

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
               TV+++GAG G LT  L+  G   VI ++   +   +L     + P  L
Sbjct: 32 PRGAHTVLDLGAGTGKLTTRLVERG-LDVIAVDPIPEMLEVLTQSLPETPALL 83


>gi|114561907|ref|YP_749420.1| modification methylase, HemK family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333200|gb|ABI70582.1| modification methylase, HemK family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 284

 Score = 35.6 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 29  FLLDLNIL------KKIAESS---GSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEK 78
           F+++ + L      + + E++          V+++G G G +   L       ++  I+K
Sbjct: 89  FIVNESTLIPRPDTEILVETALNLSVRHNAKVLDLGTGTGAIALALASERPKWRITAIDK 148

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
                P   +++  +   L + + + ++ D+           I++N PY
Sbjct: 149 ----VPEAVELAKANRGNLNLTEVEIIQSDWFSAVEQRDFDLIVSNPPY 193


>gi|301058927|ref|ZP_07199896.1| methyltransferase small domain protein [delta proteobacterium
           NaphS2]
 gi|300446923|gb|EFK10719.1| methyltransferase small domain protein [delta proteobacterium
           NaphS2]
          Length = 242

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 43  SGSLDGITVIEIGAGPGNL-TQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEI 99
           +       VI++G G G +   +LLT     V  +E   +           +     +++
Sbjct: 50  AAVQPQDVVIDLGTGCGVIPLILLLTKPLGHVFALEIQPELVRQAWRNARLNGLEKMMDV 109

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPY 127
           ++ D             S   +I N PY
Sbjct: 110 VRGDF----CRPPLASGSANLVICNPPY 133


>gi|317131925|ref|YP_004091239.1| Methyltransferase type 11 [Ethanoligenens harbinense YUAN-3]
 gi|315469904|gb|ADU26508.1| Methyltransferase type 11 [Ethanoligenens harbinense YUAN-3]
          Length = 210

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 42  SSGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLE 98
                   +V+EIG G G  +T++L       V  ++         +  ++      +  
Sbjct: 37  HITPSKADSVLEIGCGGGANITRLLALCPEGHVTGVDYSPVSVKASRKNNAAAISKGKCT 96

Query: 99  IIQDD--ALKVDFEKF 112
           ++Q +  AL  + E+F
Sbjct: 97  VVQANVSALPFEPEQF 112


>gi|260775912|ref|ZP_05884808.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608328|gb|EEX34497.1| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 374

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L  I        G  +++IG G G L              +   ++ +   +   +  P 
Sbjct: 144 LDLICRKLNLKHGQMLLDIGCGWGGLLSYAAEHYGVHGTGVTLSKEQYEYARHRYAHLPI 203

Query: 96  RLEIIQDD 103
               +Q D
Sbjct: 204 NF--VQAD 209


>gi|258422883|ref|ZP_05685783.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A9635]
 gi|257846907|gb|EEV70921.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Staphylococcus aureus A9635]
          Length = 278

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 45  SLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
             D  T+++IG G G L   L        VI  +   +   + ++ + +H ++++ +  D
Sbjct: 107 LEDDATIVDIGTGSGVLAITLKCEKPDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGD 166

Query: 104 ALKVDFEKFFNISSPIRIIANLPY 127
           ALK   ++   ++    +I+N PY
Sbjct: 167 ALKPLIKEGIKLNG---LISNPPY 187


>gi|170017332|ref|YP_001728251.1| ribosomal protein L11 methyltransferase [Leuconostoc citreum KM20]
 gi|226710094|sp|B1MZ55|PRMA_LEUCK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|169804189|gb|ACA82807.1| Ribosomal protein L11 methyltransferase [Leuconostoc citreum KM20]
          Length = 292

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 35  ILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             + + ++       G ++I++G G G L      LG   V+  + D+    + K+    
Sbjct: 137 TTRLMIQALENVVRGGESMIDVGTGSGVLAVAAKQLGVAHVLATDIDEMSVNVAKENLRL 196

Query: 93  HP--NRLEIIQDDAL 105
           +P    + ++  D L
Sbjct: 197 NPVAQDVTVVASDLL 211


>gi|321441993|gb|ADW85411.1| arg methyltransferase [Fulgoraecia exigua]
          Length = 244

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77
              G TV++IG G G L+      GA KVI +E
Sbjct: 19 HLFKGKTVLDIGCGTGILSMFAAKAGAEKVIAVE 52


>gi|301052913|ref|YP_003791124.1| putative methyltransferase [Bacillus anthracis CI]
 gi|300375082|gb|ADK03986.1| probable methyltransferase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 251

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 14/125 (11%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              +   V +IG+G G  ++ LL  G   VI +E +     + +    ++P RL+ I+  
Sbjct: 34  ELNENQIVADIGSGTGIFSRQLLDSG-LHVIGVEPNDDMRKMAEQSLKRYP-RLQSIKAT 91

Query: 104 A----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--------WISADTWPPFWESLT 151
           A    LK +      ++          + I  + +          W S D   P  +   
Sbjct: 92  AENTTLKENSVDLVAVAQAFHWFDKEAFKIECQRILKQKANVALVWNSRDVTSPLIKENA 151

Query: 152 LLFQK 156
            + QK
Sbjct: 152 EICQK 156


>gi|299532432|ref|ZP_07045824.1| cyclopropane-fatty-acyl-phospholipid synthase [Comamonas
           testosteroni S44]
 gi|298719670|gb|EFI60635.1| cyclopropane-fatty-acyl-phospholipid synthase [Comamonas
           testosteroni S44]
          Length = 424

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           L++         G  ++EIG G G L +        +V  +   +      + ++     
Sbjct: 190 LRRTLNEVSLQPGQRLLEIGCGWGGLAEAAAHEFGARVTGVTLSR------EQLAWGQRR 243

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
            L+    DA+++ ++ + ++  P R        I +  +F  +  + W  +++ L    
Sbjct: 244 MLQAGLGDAVELRYQDYRDL--PARHAGEPFDAIVSIEMFEAVGREYWHGYFQILRDCL 300


>gi|291484992|dbj|BAI86067.1| ribosomal protein L11 methyltransferase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 311

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 16/43 (37%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
              G  VI++G G G L+     L A  V   + D       +
Sbjct: 173 VQKGDKVIDVGTGSGILSIAAAMLKAESVHAYDLDPVAVESAR 215


>gi|326318272|ref|YP_004235944.1| cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375108|gb|ADX47377.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 352

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 5/134 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNR-LE 98
           E +G  DG  ++E+G G G+LT  +     A  +  I         ++  +++   R + 
Sbjct: 115 EHAGLQDGQRILELGCGWGSLTLWMAARYPASAITAISNSHSQRQYIEAAAARRGLRNVR 174

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
           +   D    D  + F+    I  +    +       F+ ++          + +   +E 
Sbjct: 175 VQTCDFNVFDTPERFD---RIVSVEMFEHLRNWPRAFSHVARWLADDGRFFMHVFTHREA 231

Query: 159 GERITAQKNSPHYG 172
                A+  S    
Sbjct: 232 PYPFVARDASDWMS 245


>gi|262276795|ref|ZP_06054588.1| RNA methyltransferase, RsmD family [alpha proteobacterium HIMB114]
 gi|262223898|gb|EEY74357.1| RNA methyltransferase, RsmD family [alpha proteobacterium HIMB114]
          Length = 187

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDISSQHP-NRLEIIQDDAL 105
           GI V++  +G G+     ++ GA  V   E D +   IL +++S+    N+ EII+ D  
Sbjct: 48  GIKVLDFFSGSGSFGLECISRGASNVKFFEIDSKTSNILFRNLSNNFEKNKYEIIKKDFF 107

Query: 106 KVDFEKFFNISSPIRIIANLPYNI 129
            +D +       P  +  + PY I
Sbjct: 108 NIDKKHLIETYRPDIVFLDPPYKI 131


>gi|325981423|ref|YP_004293825.1| methionine biosynthesis protein MetW [Nitrosomonas sp. AL212]
 gi|325530942|gb|ADZ25663.1| methionine biosynthesis protein MetW [Nitrosomonas sp. AL212]
          Length = 211

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           ++    G  ++++G G G+L + L          +E D        ++ S   N + +I 
Sbjct: 26  AAWIHPGAKILDLGCGDGSLLRYLRDTRDVFGYGVEIDDD------NLLSCFRNGINVIH 79

Query: 102 DD 103
           +D
Sbjct: 80  ND 81


>gi|239607265|gb|EEQ84252.1| protein arginine methyltransferase RmtB [Ajellomyces dermatitidis
           ER-3]
 gi|327355088|gb|EGE83945.1| protein arginine methyltransferase RmtB [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 558

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
               V+++G G G L+      GA+ VI ++         ++I   + N       D +K
Sbjct: 255 KDKVVLDVGCGTGILSMFCAKAGAKMVIAVDN-SDIIDRAREIV--YDNGF----GDVIK 307

Query: 107 VDFEKFFNISSPIRIIA 123
               K   +  P+  + 
Sbjct: 308 CIRGKIEEVELPVPQVD 324


>gi|261200777|ref|XP_002626789.1| protein arginine methyltransferase RmtB [Ajellomyces dermatitidis
           SLH14081]
 gi|239593861|gb|EEQ76442.1| protein arginine methyltransferase RmtB [Ajellomyces dermatitidis
           SLH14081]
          Length = 558

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106
               V+++G G G L+      GA+ VI ++         ++I   + N       D +K
Sbjct: 255 KDKVVLDVGCGTGILSMFCAKAGAKMVIAVDN-SDIIDRAREIV--YDNGF----GDVIK 307

Query: 107 VDFEKFFNISSPIRIIA 123
               K   +  P+  + 
Sbjct: 308 CIRGKIEEVELPVPQVD 324


>gi|237799734|ref|ZP_04588195.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022589|gb|EGI02646.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 422

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 8/41 (19%)

Query: 29  FLLDLNILK--------KIAESSGSLDGITVIEIGAGPGNL 61
           FL D + L+        +I +         ++EIG G G++
Sbjct: 166 FLSDSDTLEQAQLNKLERICQKLALKPTDHLLEIGTGWGSM 206


>gi|213967217|ref|ZP_03395366.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. tomato T1]
 gi|301381047|ref|ZP_07229465.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060809|ref|ZP_07252350.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. tomato K40]
 gi|302130084|ref|ZP_07256074.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213928059|gb|EEB61605.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. tomato T1]
 gi|331018115|gb|EGH98171.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 422

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 29  FLLDLNILK--------KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           FL + + L+        +I +         ++EIG G G++          +V      +
Sbjct: 166 FLSNDDTLEQAQLNKLERICQKLALKPTDHLLEIGTGWGSMAIYAAQQYGCRVTTTTLSR 225

Query: 81  QFFPILKDISSQ--HPNRLEIIQDD 103
           + F   +    +    +R+ ++  D
Sbjct: 226 EQFAYTEQRLIKLGLQDRVTLLLTD 250


>gi|206900625|ref|YP_002250035.1| putative O-antigen biosynthesis protein; possible
           glycosyltransferase; possible methyltransferase
           [Dictyoglomus thermophilum H-6-12]
 gi|206739728|gb|ACI18786.1| putative O-antigen biosynthesis protein; possible
           glycosyltransferase; possible methyltransferase
           [Dictyoglomus thermophilum H-6-12]
          Length = 224

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 18/120 (15%)

Query: 29  FL-LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEK-------- 78
           FL +  +I+  + +     + ++++EIGAG GN    L  LG A++V+ ++         
Sbjct: 13  FLRVRKDIID-LVKKLNLEEPLSILEIGAGGGNTLIELKRLGIAKEVVGVDIVRLVSSYQ 71

Query: 79  -----DQQFFPILKDISSQHPNRLE--IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131
                D      ++     +P      II  D L+  ++ +  +    + +    Y I +
Sbjct: 72  DDPLMDNFIVGNIEKFELPYPENYFDLIICADVLEHLYDPWNAVKKLYKYLKQNGYFIAS 131


>gi|254427678|ref|ZP_05041385.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Alcanivorax sp. DG881]
 gi|196193847|gb|EDX88806.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Alcanivorax sp. DG881]
          Length = 338

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   DG  V+E+G G G+LT  +      +R   +     Q   IL   + +  + +++I
Sbjct: 105 AELEDGQDVLEMGCGWGSLTLWMAQQYPNSRITAISNSSSQRAFILGRAAERGLSNVDVI 164

Query: 101 QDDA-LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS--ADTWPPFW--ESLTLLFQ 155
             DA +    + +  + S         +      + +W+      +   +    LT LF+
Sbjct: 165 TADASVYQPQQPYDRVVSVEMFEHMRNHKTLMSRIHDWLKPGGKLFIHVFCHRDLTYLFE 224

Query: 156 KEVGERITAQ 165
            E  +   A+
Sbjct: 225 TEGSKDWMAK 234


>gi|189466897|ref|ZP_03015682.1| hypothetical protein BACINT_03279 [Bacteroides intestinalis DSM
           17393]
 gi|189435161|gb|EDV04146.1| hypothetical protein BACINT_03279 [Bacteroides intestinalis DSM
           17393]
          Length = 1000

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 21  PKKYM--GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
            KK    GQ F     + + + +         ++++  G GN    L           + 
Sbjct: 64  AKKEFEMGQ-FFTPHEVCRDMVDVLSPTSSEMILDMCCGMGNFFNHLP--NQHNAYGFDI 120

Query: 79  DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
           D +   + + +         I + D  +   E+ F+      II N P+N+
Sbjct: 121 DSKAVAVARYLYPDA----HIEKCDIQQYHSEQRFD-----AIIGNPPFNL 162


>gi|254303380|ref|ZP_04970738.1| ribosomal protein L11 methyltransferase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323572|gb|EDK88822.1| ribosomal protein L11 methyltransferase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 310

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 10/117 (8%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---ISSQHPNRLEIIQDDA 104
             +VI+IG G G L      LGA +V   + D+    + K+   +++   N +++++ + 
Sbjct: 172 NKSVIDIGTGSGILMIAGKFLGAGEVYGTDIDEFSMEVAKENLILNNISLNDVKLLKGNL 231

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLL--FNWISADTWPPFWESLTLLFQKEVG 159
           L+V   K F+I     ++ N+  ++  +LL    +I  +     +  +      EV 
Sbjct: 232 LEVIENKKFDI-----VVCNILADVLVKLLDEIKYILKENSIVLFSGIIEDKLNEVV 283


>gi|126731119|ref|ZP_01746927.1| hypothetical protein SSE37_21810 [Sagittula stellata E-37]
 gi|126708421|gb|EBA07479.1| hypothetical protein SSE37_21810 [Sagittula stellata E-37]
          Length = 276

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-----DQQFFPILKDIS 90
            + +AE+    +G  +++IG+G G   + L      +V  I+      D      L D+ 
Sbjct: 53  TQDLAEALPFREGQRIVDIGSGIGGPARYLARRFGCQVEGIDITAPFVDA--ANRLTDLV 110

Query: 91  SQHPNRLEIIQDD--ALKVDFEKFFNISSPIRIIANLP 126
                 +  +  D  AL  + E+ F+      +  N+P
Sbjct: 111 -GMTGHVACVHGDGQALPFEDER-FDGGYSQHVTMNVP 146


>gi|126433835|ref|YP_001069526.1| methyltransferase type 11 [Mycobacterium sp. JLS]
 gi|126233635|gb|ABN97035.1| Methyltransferase type 11 [Mycobacterium sp. JLS]
          Length = 239

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97
               TV+++GAG G LT  L+  G   VI ++   +   +L     + P  L
Sbjct: 32 PRGAHTVLDLGAGTGKLTTRLVERG-LDVIAVDPIPEMLEVLTQSLPETPALL 83


>gi|28868331|ref|NP_790950.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28851568|gb|AAO54645.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 422

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 29  FLLDLNILK--------KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           FL + + L+        +I +         ++EIG G G++          +V      +
Sbjct: 166 FLSNDDTLEQAQLNKLERICQKLALKPTDHLLEIGTGWGSMAIYAAQQYGCRVTTTTLSR 225

Query: 81  QFFPILKDISSQ--HPNRLEIIQDD 103
           + F   +    +    +R+ ++  D
Sbjct: 226 EQFAYTEQRLIKLGLQDRVTLLLTD 250


>gi|77460962|ref|YP_350469.1| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas
           fluorescens Pf0-1]
 gi|77384965|gb|ABA76478.1| putative cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas
           fluorescens Pf0-1]
          Length = 423

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
           LN L++I +      G  ++EIG G G++          KV 
Sbjct: 179 LNKLERICQKLALKPGDHLLEIGTGWGSMALYAAQHYGCKVT 220


>gi|116753743|ref|YP_842861.1| methyltransferase type 12 [Methanosaeta thermophila PT]
 gi|116665194|gb|ABK14221.1| Methyltransferase type 12 [Methanosaeta thermophila PT]
          Length = 275

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 15/165 (9%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLE 98
             S       TV++IGAG G L   +  + A+ V  +++       LK ++ ++  + + 
Sbjct: 51  VASLKLQPHETVLDIGAGTGRLAIPMARM-AKSVTALDRSGGMLKCLKANMQAEGISNIT 109

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV 158
            IQ D     +E+      P   +     ++G   L   ++              F    
Sbjct: 110 CIQRD-----WEEIGVDEIPPHDVVLSSNSLGVVDLRTALAKMDQLAKRAVYIFTFTDHR 164

Query: 159 GERITAQKNSPHYGRLS--------VLTGWRTKATMMFDISPHVF 195
            +    +   P + R S        ++        +  DIS H F
Sbjct: 165 RDGGFMEFLMPEHSRRSPSWPADYLIIYNLLADMGIHADISIHRF 209


>gi|158317884|ref|YP_001510392.1| methyltransferase type 11 [Frankia sp. EAN1pec]
 gi|158113289|gb|ABW15486.1| Methyltransferase type 11 [Frankia sp. EAN1pec]
          Length = 261

 Score = 35.6 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 42  SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
           +   + G  V+++GAG G  T+ +++ GA  V+ +E        L+  +   P    +++
Sbjct: 45  ADRPVAGAGVVDVGAGTGIATRAMISRGA-SVLPVELGPVMLDRLRQRTPDLP----VVR 99

Query: 102 DD 103
            D
Sbjct: 100 GD 101


>gi|332557577|ref|ZP_08411899.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacter
           sphaeroides WS8N]
 gi|332275289|gb|EGJ20604.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodobacter
           sphaeroides WS8N]
          Length = 403

 Score = 35.6 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-----DQQFFPILKDISS 91
             + +  G+  G  V+EIG G G   +        +V  +       D   + + +   +
Sbjct: 176 ASMVDRIGAKPGEHVLEIGCGWGGFAEYAARERGLRVTGLTISQAQHD---YAVERIARA 232

Query: 92  QHPNRLEIIQDD 103
              +R+EI   D
Sbjct: 233 GLSDRVEIRLQD 244


>gi|260911046|ref|ZP_05917682.1| SAM-dependent methyltransferase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634850|gb|EEX52904.1| SAM-dependent methyltransferase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 259

 Score = 35.6 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 8/70 (11%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +  ++ ++        V+E   G G   ++ +         +E +++    ++   + +P
Sbjct: 30  LTTQMLDAMNISQADDVVEFAPGLGQTARLTVAHKPHSYTAVELNEEAAERVRRNVN-YP 88

Query: 95  NRLEIIQDDA 104
             + ++  DA
Sbjct: 89  G-MRVVAADA 97


>gi|240170643|ref|ZP_04749302.1| methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 277

 Score = 35.6 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           +   D   V+E+  G G     +L    R  +  E D     +++ +   H NR ++   
Sbjct: 51  ADVSDAD-VLELAPGLGRTAAEILVRHPRSYVGAEGDPDAANLVRGVLQDHGNRGDVRVT 109

Query: 103 DA 104
           DA
Sbjct: 110 DA 111


>gi|254415793|ref|ZP_05029551.1| Methyltransferase domain family [Microcoleus chthonoplastes PCC
           7420]
 gi|196177499|gb|EDX72505.1| Methyltransferase domain family [Microcoleus chthonoplastes PCC
           7420]
          Length = 1265

 Score = 35.6 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 23/140 (16%)

Query: 10  LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           ++   S Y + P++               +          +V+E+GAG G +T+ L    
Sbjct: 58  IRDWSSEYHLSPQRS-------------SLLRPLQINQCSSVLELGAGCGAITRYLGENI 104

Query: 70  ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--------ISSPIRI 121
              VI +E  +Q    L  +  Q  N ++++  +   ++F + F+          S + +
Sbjct: 105 PH-VIALEGSKQRAK-LAALRCQDLNSVQVVVSNFKDIEFNQKFDAVTLIGVLEYSGLYL 162

Query: 122 IANLPYNIGTRLLFNWISAD 141
            +  PY     +  +++  D
Sbjct: 163 HSQNPYQKTLEIAKHYLKDD 182


>gi|197124813|ref|YP_002136764.1| glycosyl transferase family 2 [Anaeromyxobacter sp. K]
 gi|196174662|gb|ACG75635.1| glycosyl transferase family 2 [Anaeromyxobacter sp. K]
          Length = 527

 Score = 35.6 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           +A+      G  V+EIG+G GNLT+ L+   
Sbjct: 285 MADVIRPFCGQRVLEIGSGTGNLTRRLVPRN 315


>gi|150024261|ref|YP_001295087.1| phospholipid N-methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770802|emb|CAL42267.1| Probable phospholipid N-methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 183

 Score = 35.6 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQ 92
           + KK+ +         ++E GAG G  T  LL        ++  E +  F+  L  I   
Sbjct: 27  LAKKMLKPIHFDTANCIVEFGAGTGIFTHKLLEKMNPNALLLAFEINTAFYEELIKIK-- 84

Query: 93  HPNRLEIIQDDALKVDFE-KFFNISSPIRIIANLPYNI 129
              RL +I D A K++   K  +      II++LP+ +
Sbjct: 85  -DKRLVVINDSAEKIEHYLKVNHKEKADYIISSLPFAM 121


>gi|148284404|ref|YP_001248494.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Boryong]
 gi|262824724|sp|A5CD85|RSMH_ORITB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146739843|emb|CAM79768.1| S-adenosyl-methyltransferase [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score = 35.6 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
              +D  T ++   G G  ++++L+    K+I  ++D     I      Q+ NR     D
Sbjct: 17  LAPVDNETYLDCTFGTGGYSKLILSNCNCKIIAFDRDPAVISIASQFYQQYSNRFTFFND 76

Query: 103 DALKVD 108
           + ++ +
Sbjct: 77  NFVEAN 82


>gi|121702523|ref|XP_001269526.1| protein arginine n-methyltransferase 1, [Aspergillus clavatus NRRL
           1]
 gi|119397669|gb|EAW08100.1| protein arginine n-methyltransferase 1 [Aspergillus clavatus NRRL
           1]
          Length = 352

 Score = 35.6 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHP 94
             I ++        V+++G G G L+      GA+ VI ++         ++I +     
Sbjct: 58  DSIYQNRHIFKDKVVLDVGCGTGILSMFAAKAGAKHVIGVDM-SSIIEKAREIVAVNGLS 116

Query: 95  NRLEIIQD 102
           +++ ++Q 
Sbjct: 117 DKVTLLQG 124


>gi|170724406|ref|YP_001758432.1| sun protein [Shewanella woodyi ATCC 51908]
 gi|169809753|gb|ACA84337.1| sun protein [Shewanella woodyi ATCC 51908]
          Length = 425

 Score = 35.6 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 28/72 (38%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A      DG  +++  A PG  T  +L     +++ ++ D      ++    +     ++
Sbjct: 233 ATLLAPADGELILDACAAPGGKTCHILERADTELVAVDFDANRLERVQQNLDRLSLNAKL 292

Query: 100 IQDDALKVDFEK 111
           +  DA  +D   
Sbjct: 293 VHGDAADIDSWW 304


>gi|315127798|ref|YP_004069801.1| N-6 adenine-specific DNA methylase domain-containing protein
           [Pseudoalteromonas sp. SM9913]
 gi|315016312|gb|ADT69650.1| N-6 adenine-specific DNA methylase domain-containing protein
           [Pseudoalteromonas sp. SM9913]
          Length = 201

 Score = 35.6 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 6/130 (4%)

Query: 35  ILKKIAESS-----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KD 88
              +I E+              ++  AG G L    L+  A+    IE D Q    L ++
Sbjct: 42  TTDRIKETVFNWLMHDTRDAHTLDCFAGSGGLGFEALSRFAKHTTFIELDSQAAKQLEQN 101

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
           I++      +++  + L     K  + +  +  I         +   + +  + W     
Sbjct: 102 IATLDAQNAQVVNTNTLTFLERKNTSDTFNLVFIDPPFRKNLAQSCCDLLENNQWLDPEA 161

Query: 149 SLTLLFQKEV 158
            + +  + E+
Sbjct: 162 LIYVEVETEL 171


>gi|262372856|ref|ZP_06066135.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter junii
           SH205]
 gi|262312881|gb|EEY93966.1| cyclopropane-fatty-acyl-phospholipid synthase [Acinetobacter junii
           SH205]
          Length = 349

 Score = 35.6 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           + +   DG  ++E+G G G+ T  +      A+   V     Q   IL +   ++ N ++
Sbjct: 115 DRAQLQDGQEILELGCGWGSFTLWMAERYPNAKITGVSNSATQRQHILAEAEKRNLNNIQ 174

Query: 99  IIQDD--ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD 141
           II  D   L++    F  + S         Y      + +W+  D
Sbjct: 175 IITCDVNVLELKTNTFDRVVSVEMFEHVRNYQKLFEKIQSWLKED 219


>gi|254822117|ref|ZP_05227118.1| tRNA (guanine-N(7)-)-methyltransferase [Mycobacterium
           intracellulare ATCC 13950]
          Length = 254

 Score = 35.6 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 51  VIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDDALKV 107
           V+EIG G G  T  +        VI +E  ++    +L  I       + +++ +AL V
Sbjct: 84  VLEIGCGSGTSTLAMAKDEPDVDVIAVEIYRRGLAQLLCAIDRDAVTNIRLVRGNALDV 142


>gi|227537418|ref|ZP_03967467.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242692|gb|EEI92707.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 218

 Score = 35.6 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           E      G  V+EIG G G  T +L+ LGA  V  IE+ +  +
Sbjct: 78  ELLHVKKGDKVLEIGTGSGYQTCILMELGAD-VYTIERQESLY 119


>gi|237731375|ref|ZP_04561856.1| cyclopropane fatty acyl phospholipid synthase [Citrobacter sp.
           30_2]
 gi|226906914|gb|EEH92832.1| cyclopropane fatty acyl phospholipid synthase [Citrobacter sp.
           30_2]
          Length = 382

 Score = 35.6 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           LK IAE      G+ V++IG G G L+Q + +     V+ +    +   + ++  +    
Sbjct: 156 LKMIAEKLQLKPGMRVLDIGCGWGGLSQFMASQYGVSVVGVTISAEQQKMAQERCAGLD- 214

Query: 96  RLEIIQDD 103
            + I+  D
Sbjct: 215 -VTILLQD 221


>gi|254169316|ref|ZP_04876147.1| tRNA methyltransferase complex GCD14 subunit superfamily
           [Aciduliprofundum boonei T469]
 gi|289595887|ref|YP_003482583.1| tRNA methyltransferase complex GCD14 subunit [Aciduliprofundum
           boonei T469]
 gi|197621737|gb|EDY34321.1| tRNA methyltransferase complex GCD14 subunit superfamily
           [Aciduliprofundum boonei T469]
 gi|289533674|gb|ADD08021.1| tRNA methyltransferase complex GCD14 subunit [Aciduliprofundum
           boonei T469]
          Length = 237

 Score = 35.6 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 34/105 (32%), Gaps = 12/105 (11%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILK 87
           L D      I    G   G  V+E GAG G ++  LL  T    KV   E    F  I K
Sbjct: 65  LKD---AAYIIARCGIRSGWRVVEGGAGSGAMSIALLYYTYPDGKVYTYELRDDFAAIAK 121

Query: 88  DISSQHPNRLEII--QDDALKVDFEK-----FFNISSPIRIIANL 125
                   +   I  + D  K   E+       +I  P   +   
Sbjct: 122 KNVENAGLQAHWILKKGDIRKDVEERDVDAFILDIPEPWEAVDMA 166


>gi|157369075|ref|YP_001477064.1| protein-L-isoaspartate O-methyltransferase [Serratia proteamaculans
           568]
 gi|166987991|sp|A8G9Z6|PIMT_SERP5 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|157320839|gb|ABV39936.1| protein-L-isoaspartate O-methyltransferase [Serratia proteamaculans
           568]
          Length = 208

 Score = 35.6 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLNLTPTSRVLEIGTGSGYQTAILAHL-VQHVCSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I   L+   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWASRGPFDAIIVTAAPPEIPPALMEQL 162


>gi|187923048|ref|YP_001894690.1| Cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           phytofirmans PsJN]
 gi|187714242|gb|ACD15466.1| Cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           phytofirmans PsJN]
          Length = 403

 Score = 35.6 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 28  NF---LLDLNILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR 71
           NF   L D    K  +I ++ G  +G+ ++EIG G G        LG  
Sbjct: 163 NFHQSLEDAQHAKYQRIIDTLGLREGMHILEIGCGWGAFALHAARLGIH 211


>gi|86751423|ref|YP_487919.1| UbiE/COQ5 methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86574451|gb|ABD09008.1| UbiE/COQ5 methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 208

 Score = 35.6 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 40  AESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRL 97
           A+++G       V+EIG G G+    L    A  +           +L+   +   P  L
Sbjct: 33  ADAAGRLRPTDHVLEIGCGTGSAAIRLAPHAAEWIAT----DFSAEMLRIARAKPAPANL 88

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIA 123
             +  DA     E+ F+      I A
Sbjct: 89  RFVLADA-----ERAFDGGPFDAICA 109


>gi|260903702|ref|ZP_05912024.1| SAM-dependent methyltransferase [Brevibacterium linens BL2]
          Length = 345

 Score = 35.6 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 9/98 (9%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPI----LKDISSQ 92
           I        G  V+E G G G L+  LL       ++   E  ++F  I    + D    
Sbjct: 97  IVTLGDIFPGAVVVEAGVGSGALSMALLRAVGPTGRLHSFELREEFATIAAGNIADFFDG 156

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRIIANL--PYN 128
            P+   +   D L  +  + +   +  R++ ++  P+N
Sbjct: 157 RPDNWSVTVGD-LSEELPQAYEPGTVDRVVLDMLTPWN 193


>gi|121603432|ref|YP_980761.1| hypothetical protein Pnap_0519 [Polaromonas naphthalenivorans CJ2]
 gi|120592401|gb|ABM35840.1| protein of unknown function DUF185 [Polaromonas naphthalenivorans
           CJ2]
          Length = 368

 Score = 35.6 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 24  YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV---IVIEKDQ 80
             GQ       + +++A++  +     V E GAG G L Q +L     +V    +++   
Sbjct: 73  RFGQ------TLARQVAQALQASGTTEVWEFGAGSGALAQQVLDTLGEQVTRYTIVDLSS 126

Query: 81  QFFPILKDISSQHPNRLE 98
                 ++  + H  +++
Sbjct: 127 SLRERQRERLAAHAGKVQ 144


>gi|321441989|gb|ADW85409.1| arg methyltransferase [Ethmia eupostica]
          Length = 244

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQ 101
               G  V++IG G G L+      GA KVI +E         + I  +++    +EI++
Sbjct: 19  HLFKGKVVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEANRLDEVIEIVK 77

Query: 102 D 102
            
Sbjct: 78  G 78


>gi|318061647|ref|ZP_07980368.1| 3-demethylubiquinone-9 3-methyltransferase protein [Streptomyces
          sp. SA3_actG]
 gi|318078251|ref|ZP_07985583.1| 3-demethylubiquinone-9 3-methyltransferase protein [Streptomyces
          sp. SA3_actF]
          Length = 287

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
            + K +A +        ++++G GPG LT  L  L  R+V+ ++ D+   
Sbjct: 28 PGLAKALAGALRLDGRGRLVDVGCGPGTLTLRLAHLF-REVVGVDPDRGMI 77


>gi|295400674|ref|ZP_06810651.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977255|gb|EFG52856.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 288

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISS 91
             +L +I +       + V+++G G G +   L L   A  +  I+   +   + +  + 
Sbjct: 103 EGVLTRITQLFPRNTTVDVVDVGTGSGAIAITLALENPALSITAIDISAEALQMAEQNAK 162

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
           +    +  I  D L+              +++N PY
Sbjct: 163 RLGADVAFICGDLLQ---PLIEANRKVDVVVSNPPY 195


>gi|254446788|ref|ZP_05060263.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium
           DG1235]
 gi|198256213|gb|EDY80522.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium
           DG1235]
          Length = 305

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 29/69 (42%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           E     DG   ++   G G  T+++L      V+ +++D        ++  ++ +RL   
Sbjct: 14  EHLAPSDGGLYLDCTFGGGGHTELVLEAANCTVVALDQDPAAVARAAELKERYGDRLRFH 73

Query: 101 QDDALKVDF 109
           + +   +D 
Sbjct: 74  RMNFETLDQ 82


>gi|149913829|ref|ZP_01902361.1| Protein-L-isoaspartate O-methyltransferase [Roseobacter sp.
           AzwK-3b]
 gi|149812113|gb|EDM71944.1| Protein-L-isoaspartate O-methyltransferase [Roseobacter sp.
           AzwK-3b]
          Length = 218

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + ++        V+E+G G G     +L+  AR+V  +++ ++      +I  +
Sbjct: 67  PSVVGLMTQALKISARDKVLEVGTGSGY-QAAILSQLARRVYTVDRHKRLVAEASEIFRE 125

Query: 93  HP-NRLEIIQDD 103
                +  +  D
Sbjct: 126 LDLTNITAVTGD 137


>gi|73669940|ref|YP_305955.1| hypothetical protein Mbar_A2460 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397102|gb|AAZ71375.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 281

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
              ++ +  S     G  V+++G GPG  +  L   G  KV  I+  ++     +  + +
Sbjct: 55  EKTIRHLITSGFLKTGDQVLDLGCGPGLYSSKLCFEG-MKVTGIDLSRRSIDYARAQAER 113

Query: 93  HPNRLEIIQDDALKVDFEKFFN 114
               ++ I  D   +D+++ F+
Sbjct: 114 DGQNIDYIYTDFFNIDYKETFD 135


>gi|39935646|ref|NP_947922.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodopseudomonas palustris CGA009]
 gi|192291228|ref|YP_001991833.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodopseudomonas palustris TIE-1]
 gi|39649499|emb|CAE28021.1| possible protein-L-isoaspartate O-methyltransferase
           [Rhodopseudomonas palustris CGA009]
 gi|192284977|gb|ACF01358.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodopseudomonas palustris TIE-1]
          Length = 221

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 28  NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           +FLL+  +  ++ +++       V+ +G   G +  +   L AR    I+ D+     ++
Sbjct: 63  HFLLNPIMTARMLQAAELQHDDRVLVVGCPTGYIAAVAAKLAARVTTTID-DESLAQRIR 121

Query: 88  DISSQ 92
                
Sbjct: 122 ATLPA 126


>gi|328852796|gb|EGG01939.1| hypothetical protein MELLADRAFT_38847 [Melampsora larici-populina
           98AG31]
          Length = 403

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGN 60
           L  I   +       V+EIG+G G+
Sbjct: 149 LDLIIRKANIGSTDHVLEIGSGWGS 173


>gi|293606008|ref|ZP_06688373.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815463|gb|EFF74579.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 361

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           +   DG  ++E+G G G+LT  +      AR   V     Q   I     ++  + +E+I
Sbjct: 129 AELADGQRILELGCGWGSLTLWMAERYPTARITAVSNSASQRQHIQAQCRARGLDNVEVI 188

Query: 101 QDDA--LKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISAD----TWPPFWESLTLLF 154
             D   L++  ++F    S         Y      + +W+              SL   F
Sbjct: 189 TCDVNTLQLPTQEFDRCVSVEMFEHMRNYQDLLARIASWLRPGGKLFVHLFAHRSLMYPF 248

Query: 155 QKEVGERITAQ 165
           + E  +    +
Sbjct: 249 ETEGDDNWMGR 259


>gi|219851308|ref|YP_002465740.1| Methyltransferase type 12 [Methanosphaerula palustris E1-9c]
 gi|219545567|gb|ACL16017.1| Methyltransferase type 12 [Methanosphaerula palustris E1-9c]
          Length = 296

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 32/126 (25%)

Query: 1   MTMNNKSHSLKTIL-------------SHYKIIPKKYMG---QNFLLDLNILKKIAESSG 44
           M+ NN  H +K  +             + Y I  + Y G   QN  LD  +         
Sbjct: 1   MSKNNDHHIIKKSVYLYTNYRSDRMEANEYSINAR-YWGAISQN--LDEFVCPSPVNIPE 57

Query: 45  --------SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
                     +G +V+EIG G G+L    L+  +       +D     +  DI +    R
Sbjct: 58  WASGTARWLGEGASVLEIGPGRGDLAFRTLSERST-----IRDYHLADVSPDILAYVLAR 112

Query: 97  LEIIQD 102
           LE ++ 
Sbjct: 113 LEPVKG 118


>gi|189424723|ref|YP_001951900.1| methyltransferase type 11 [Geobacter lovleyi SZ]
 gi|189420982|gb|ACD95380.1| Methyltransferase type 11 [Geobacter lovleyi SZ]
          Length = 271

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 47  DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP-ILKDISSQHPNRLEIIQDDA 104
              TV++IG G G L ++L        +    D    P +L+  + + P  + ++Q DA
Sbjct: 45  PNATVLDIGCGTGRLLELLGHCFPGTALT-GLD--LAPNMLQQAAERLPATVRLVQGDA 100


>gi|85058507|ref|YP_454209.1| protein-L-isoaspartate O-methyltransferase [Sodalis glossinidius
           str. 'morsitans']
 gi|123520025|sp|Q2NVM1|PIMT_SODGM RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|84779027|dbj|BAE73804.1| protein-L-isoaspartate O-methyltransferase [Sodalis glossinidius
           str. 'morsitans']
          Length = 208

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+ ++ E         V+EIG G G  T +L  L  + V  +E+       L+  + +
Sbjct: 61  PYIVARMTELLALWPESRVLEIGTGSGYQTAILAHL-VKHVCSVER----IKKLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
               L++        D  + +    P    I+   P  I   L+   
Sbjct: 116 RLKLLDLHNISTRHGDGWQGWLSRGPFDAIIVTAAPPEIPQALMAQL 162


>gi|91978794|ref|YP_571453.1| cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris BisB5]
 gi|91685250|gb|ABE41552.1| Cyclopropane-fatty-acyl-phospholipid synthase [Rhodopseudomonas
           palustris BisB5]
          Length = 341

 Score = 35.6 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 16/150 (10%)

Query: 19  IIPKKYMGQNFLLDLNI---------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69
           + P +     F  D N          L+   E +   DG +V+E+G G G+L+  +    
Sbjct: 79  LGPNRKYSSCFYRDDNATLQQAEEDALRLTMEHADLRDGQSVLELGCGWGSLSLAMARQF 138

Query: 70  ARKVIVIEKD---QQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126
               IV   +   Q+ +   + I    PN L ++  D    +    F+    I  +    
Sbjct: 139 PYSRIVAVSNSASQRNYIEAQAILRDLPN-LRVVTSDMNVFEPHARFD---RIVSVEMFE 194

Query: 127 YNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           + +  R L  WI     P     + +   +
Sbjct: 195 HMMNWRKLLTWIHGWLAPGGLFFMHIFTHR 224


>gi|322831412|ref|YP_004211439.1| protein-L-isoaspartate O-methyltransferase [Rahnella sp. Y9602]
 gi|321166613|gb|ADW72312.1| protein-L-isoaspartate O-methyltransferase [Rahnella sp. Y9602]
          Length = 208

 Score = 35.6 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
              + ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYTVARMTELLRLEPSSRVLEIGTGSGYQTAILAHL-VEHVFSVER----IKGLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D  + +    P    I+   P  I   LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWPSRGPFDAIIVTAAPPEIPQDLLQQL 162


>gi|319740467|gb|ADV60527.1| arg methyltransferase [Manduca sexta]
          Length = 244

 Score = 35.6 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
               G  V++IG G G L+      GA KVI +E         + I     NRL  +  D
Sbjct: 19  HLFKGKVVLDIGCGTGILSMFAAKAGAAKVIAVEC-SNIVDYARKIVEA--NRLSDVI-D 74

Query: 104 ALKVDFEKFFNISSPIRII 122
            +K   E+       + II
Sbjct: 75  IVKGKVEEVELPVEKVDII 93


>gi|300790744|ref|YP_003771035.1| type I restriction system adenine methylase [Amycolatopsis
           mediterranei U32]
 gi|299800258|gb|ADJ50633.1| putative type I restriction system adenine methylase [Amycolatopsis
           mediterranei U32]
          Length = 564

 Score = 35.6 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           I + +A  +G +   T+++   G G L    L  GA+ V+  + D     I         
Sbjct: 152 IAELMARLAGPVS--TILDPACGFGALA---LASGAKTVLGQDSDPMTASIAALRLRLRG 206

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
             +E+   DAL+   E  F   +   ++ + P+N
Sbjct: 207 LEVEVHAVDALR---EDAFAGRTAEAVLCDPPFN 237


>gi|299134600|ref|ZP_07027792.1| Trans-aconitate 2-methyltransferase [Afipia sp. 1NLS2]
 gi|298590410|gb|EFI50613.1| Trans-aconitate 2-methyltransferase [Afipia sp. 1NLS2]
          Length = 256

 Score = 35.6 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 21/168 (12%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96
           + +           V++IG GPGN T++L+       +    D     +L+    + PN 
Sbjct: 21  RDLLAQIPLTAPRHVVDIGCGPGNSTELLVQRWPDATVT-GIDT-SADMLRQARERLPN- 77

Query: 97  LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           +E I+ +          ++     I   +P ++G   L   +SA       +   L  Q 
Sbjct: 78  VEFIETNVSHWKPPADADVLFANAIFQWVPDHLGQ--LKRLLSALP-----QGGVLAVQM 130

Query: 157 EVGERITAQKNSPHYGRLSVLTGWR---TKATMMFDISPHVFFPSPKV 201
                  A+        +++   WR   +  T + DI      PSP+V
Sbjct: 131 P---DNLAEPTHVLMREVALDGPWRDALSDVTRLRDI-----LPSPRV 170


>gi|296109252|ref|YP_003616201.1| tRNA (adenine-N(1)-)-methyltransferase [Methanocaldococcus infernus
           ME]
 gi|295434066|gb|ADG13237.1| tRNA (adenine-N(1)-)-methyltransferase [Methanocaldococcus infernus
           ME]
          Length = 279

 Score = 35.6 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           I    G  +G TV+E G G G LT  L     +   VI  D +    LK
Sbjct: 79  ILARGGIREGETVVEAGVGSGALTMYLSNAVGKSGRVIGYDIR-VESLK 126


>gi|258654521|ref|YP_003203677.1| type 12 methyltransferase [Nakamurella multipartita DSM 44233]
 gi|258557746|gb|ACV80688.1| Methyltransferase type 12 [Nakamurella multipartita DSM 44233]
          Length = 236

 Score = 35.6 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 38  KIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95
           +I  ++       V+EIG G G   T   L    R V+ ++ D     + +   +Q P 
Sbjct: 45  RI--AAFLPTSGRVLEIGCGHGLFSTYAALAGPGRSVVGVDIDADKIALARQAEAQLPG 101


>gi|261415106|ref|YP_003248789.1| Methyltransferase type 11 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371562|gb|ACX74307.1| Methyltransferase type 11 [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 258

 Score = 35.6 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 32  DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-S 90
             +I++ I ++    +G+ V+E+GAG G  +  L  LGA  V V++  +    I+  +  
Sbjct: 28  SPSIIEAIKKNFKL-EGLKVLEVGAGTGRDSAELARLGAD-VYVLDYAENSLKIVNSLRE 85

Query: 91  SQHPNRLEIIQDDALKVDFEK 111
           S+    L +++ DA K  F  
Sbjct: 86  SEGLKNLHLVRGDAFKSPFPD 106


>gi|300770016|ref|ZP_07079895.1| methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762492|gb|EFK59309.1| methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 236

 Score = 35.6 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHPNRLE 98
           A ++  +    +++IG G G +  ML       ++  +E D       K      P    
Sbjct: 29  AATTADIPAAHILDIGTGTGVIALMLAQRFENAILEAVEIDALAADRAKQNFLNSPFSER 88

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNIGT---RLLFNWISADTWPPFWESL 150
           +    A  V FE    +S    II+N P+   +          +     PF+E L
Sbjct: 89  MY---AQHVSFEDLHPVSKYDLIISNPPFYTDSLHNPDNRKKTARHADLPFFERL 140


>gi|254476065|ref|ZP_05089451.1| conserved hypothetical protein [Ruegeria sp. R11]
 gi|214030308|gb|EEB71143.1| conserved hypothetical protein [Ruegeria sp. R11]
          Length = 414

 Score = 35.6 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH--PNRLEII 100
              G  V++IG G G LT ML    GA+ V   E+        + + +++   +R+ +I
Sbjct: 99  VRPGDIVLDIGCGAG-LTAMLAARAGAQHVYTCEQQPLIAEAARQVIARNGLADRITVI 156


>gi|73667675|ref|YP_303690.1| demethylmenaquinone methyltransferase [Methanosarcina barkeri str.
           Fusaro]
 gi|72394837|gb|AAZ69110.1| demethylmenaquinone methyltransferase [Methanosarcina barkeri str.
           Fusaro]
          Length = 168

 Score = 35.6 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK--VIVIEKDQQFFPILKDISSQHP 94
            K+ + SG  +G+ ++E+G G G  T         K  V  ++   +    LK   S+  
Sbjct: 5   DKVIKRSGITEGMRILEVGCGSGAFTTFAAKASGIKGEVYALDIQPKMLLQLKKKLSRPE 64

Query: 95  NR----LEIIQDDA--LKVDFEKF 112
           NR    +++++ D   L  D   F
Sbjct: 65  NRDIKNIKLVEGDVHKLPFDDNSF 88


>gi|16329193|ref|NP_439921.1| hypothetical protein sll1407 [Synechocystis sp. PCC 6803]
 gi|1651673|dbj|BAA16601.1| sll1407 [Synechocystis sp. PCC 6803]
          Length = 265

 Score = 35.6 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +   I     +    T +E G G G L  + L      V  ++  Q+          +
Sbjct: 26  EEVADFILALVKATRETTFLEPGVGTG-LNVIPLVRRGYSVTGVDISQEMLSQFSQKLPR 84

Query: 93  HPNRLEIIQDDALKVDFEK 111
            P  L +I +DA ++ F  
Sbjct: 85  IPPNLRLIHEDASQLSFPD 103


>gi|327283155|ref|XP_003226307.1| PREDICTED: methyltransferase-like protein 5-like [Anolis
           carolinensis]
          Length = 218

 Score = 35.6 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 6/147 (4%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I  +   ++   V ++G G G L+     LGA   +  + D        D+ S++    E
Sbjct: 43  IHNTFDDIENKIVADLGCGCGVLSIGSSMLGAGLCVGFDIDLDAL----DVFSKNAEEFE 98

Query: 99  IIQDDALKVDFEKFFNISSPIR--IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           +   D ++ +     +    I   +I N P+        +     T      +      K
Sbjct: 99  LTNIDMIQCNVCSLPDKMPKIFDTVIMNPPFGTKHNKGMDMAFLKTALQMARTAVYSLHK 158

Query: 157 EVGERITAQKNSPHYGRLSVLTGWRTK 183
               +   +K      ++ VL   R  
Sbjct: 159 TSTRQHIQKKAEEWKVKMEVLAELRYD 185


>gi|326801093|ref|YP_004318912.1| methyltransferase type 11 [Sphingobacterium sp. 21]
 gi|326551857|gb|ADZ80242.1| Methyltransferase type 11 [Sphingobacterium sp. 21]
          Length = 179

 Score = 35.6 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 35  ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
           +++ +   +       + ++G G G +          K + I+ D +     ++ + +  
Sbjct: 40  VVEAMLTLANVGPNDMLYDLGCGDGRIVVTAAKKFGAKAVGIDIDPERIQEARENAQKAA 99

Query: 95  --NRLEIIQDDALKVDFEK 111
             N++  +Q D  K DF K
Sbjct: 100 VENKVAFLQQDLFKADFSK 118


>gi|307214687|gb|EFN89616.1| UPF0431 protein C1orf66-like protein [Harpegnathos saltator]
          Length = 493

 Score = 35.6 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 36  LKKI-AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE-----------KDQQFF 83
           + KI A+ +   +   ++++GAG G+L + L       V  IE            D++  
Sbjct: 157 IAKICADCARESNAKCIVDVGAGMGHLARSLAFKYGLYVTCIEQNASLSQQARKWDRELL 216

Query: 84  PILKDISSQHPNRL 97
             +       P +L
Sbjct: 217 TSISKHLPDLPIKL 230


>gi|317152679|ref|YP_004120727.1| type 11 methyltransferase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942930|gb|ADU61981.1| Methyltransferase type 11 [Desulfovibrio aespoeensis Aspo-2]
          Length = 256

 Score = 35.6 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 38  KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNR 96
           + AE   + +   ++EIGAG G LT+ +       + + ++        L  +S      
Sbjct: 34  RCAEHVPTGEYPAILEIGAGGGVLTRHIAERCTHSRYVAVDISPGM---LAQVSRDGLTN 90

Query: 97  LEIIQDD 103
            E +  D
Sbjct: 91  PEFVAAD 97


>gi|256846484|ref|ZP_05551941.1| ribosomal protein L11 methyltransferase [Fusobacterium sp.
           3_1_36A2]
 gi|256718253|gb|EEU31809.1| ribosomal protein L11 methyltransferase [Fusobacterium sp.
           3_1_36A2]
          Length = 312

 Score = 35.6 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 10/116 (8%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD---ISSQHPNRLEIIQDDA 104
             +VI+IG G G L      LGA +V   + D+    + K+   +++   N +++++ + 
Sbjct: 174 NKSVIDIGTGSGILMIAGKFLGAGEVYGTDIDEFSMEVAKENLILNNISLNDVKLLKGNL 233

Query: 105 LKVDFEKFFNISSPIRIIANLPYNIGTRLL--FNWISADTWPPFWESLTLLFQKEV 158
           L+V   K F+I     ++ N+  ++  +LL    +I  ++    +  +      EV
Sbjct: 234 LEVIENKKFDI-----VVCNILADVLVKLLDEIKYILKESSIVLFSGIIEDKLNEV 284


>gi|320140523|gb|EFW32377.1| methyltransferase domain protein [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 238

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            D   +++IG G G+LT  L  LG   V  ++       +    ++Q    +  ++ D  
Sbjct: 32  KDESNILDIGCGTGSLTVQLEALG--NVTGMDLSVDMLTV----AAQKSANVNWLEGDMT 85

Query: 106 KVDFEKFFNI 115
             D ++ F+I
Sbjct: 86  SFDLQQQFDI 95


>gi|302333267|gb|ADL23460.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 238

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            D   +++IG G G+LT  L  LG   V  ++       +    ++Q    +  ++ D  
Sbjct: 32  KDESNILDIGCGTGSLTVQLEALG--NVTGMDLSVDMLTV----AAQKSANVNWLEGDMT 85

Query: 106 KVDFEKFFNI 115
             D ++ F+I
Sbjct: 86  SFDLQQQFDI 95


>gi|300869710|ref|YP_003784581.1| modification methylase BsuBI [Brachyspira pilosicoli 95/1000]
 gi|300687409|gb|ADK30080.1| modification methylase, BsuBI [Brachyspira pilosicoli 95/1000]
          Length = 406

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 14  LSHYKIIPKKYMGQNF----LLDLNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTL 68
           L +  I  +K +GQ F    + DL +LK++   S   D + +++   G G  L       
Sbjct: 14  LKNTNIEKRKKLGQYFTPKSIRDL-LLKELINISEKKDNVKILDPACGSGEFLLSCREYF 72

Query: 69  GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127
               +   + D+    I K +     N  +I   D LK D +K         II N PY
Sbjct: 73  KNAHMHGFDIDESLVSISKKLI----NNADIKCLDTLKFDTDKSIKYD---YIIGNPPY 124


>gi|282928224|ref|ZP_06335829.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282590031|gb|EFB95113.1| conserved hypothetical protein [Staphylococcus aureus A10102]
          Length = 238

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            D   +++IG G G+LT  L  LG   V  ++       +    ++Q    +  ++ D  
Sbjct: 32  KDESNILDIGCGTGSLTVQLEALG--NVTGMDLSVDMLTV----AAQKSANVNWLEGDMT 85

Query: 106 KVDFEKFFNI 115
             D ++ F+I
Sbjct: 86  SFDLQQQFDI 95


>gi|270159136|ref|ZP_06187792.1| tRNA (guanine-N(7)-)-methyltransferase [Legionella longbeachae
           D-4968]
 gi|289166030|ref|YP_003456168.1| tRNA (m7G46) methyltransferase, SAM-dependent [Legionella
           longbeachae NSW150]
 gi|269987475|gb|EEZ93730.1| tRNA (guanine-N(7)-)-methyltransferase [Legionella longbeachae
           D-4968]
 gi|288859203|emb|CBJ13135.1| tRNA (m7G46) methyltransferase, SAM-dependent [Legionella
           longbeachae NSW150]
          Length = 224

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 16/130 (12%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFF---PILKDISSQHPNRLEIIQ 101
               T++EIG G G     +         + IE          +  D+       + I+ 
Sbjct: 47  RSADTIVEIGFGMGASLLTMAKNNPELNYVGIEV--HLAGVGSLAADLHEHQLTNVRIVP 104

Query: 102 DDALKVDFEKFFN---------ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTL 152
           +DA+KV   +  +            P     +    +        ++    P  +     
Sbjct: 105 NDAVKVFNTQLLDNSLAGVQIFFPDPWHKKRHHKRRLIQTAFIQLLAQKIRPGGFIHCAT 164

Query: 153 LFQKEVGERI 162
            +Q E  E +
Sbjct: 165 DWQ-EYAEHM 173


>gi|260579295|ref|ZP_05847178.1| modification methylase NaeI (cytosine-specificmethyltransferase
           NaeI) (M.NaeI) [Corynebacterium jeikeium ATCC 43734]
 gi|258602594|gb|EEW15888.1| modification methylase NaeI (cytosine-specificmethyltransferase
           NaeI) (M.NaeI) [Corynebacterium jeikeium ATCC 43734]
          Length = 372

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           +EI AG G     L   G     V+E D      L+           I+  D L  D   
Sbjct: 39  VEICAGAGGQALGLEAAGFIHRAVVELDGHAVSTLRANRPAW----NIVHGDVLDFDISP 94

Query: 112 FFNISSPIR-IIANLPYNIGTRLLFNWISADTWPPFWE 148
           F +    +   +   P++I  + L      D +P   E
Sbjct: 95  FADDLDLLAGGVPCPPFSIAGKQLGQDDERDLFPRALE 132


>gi|255536286|ref|YP_003096657.1| Methyltransferase [Flavobacteriaceae bacterium 3519-10]
 gi|262828309|sp|C6X2D2|TRMN6_FLAB3 RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|255342482|gb|ACU08595.1| Methyltransferase [Flavobacteriaceae bacterium 3519-10]
          Length = 231

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD--ISSQHPNRL 97
             +   D   ++E+G G G +  M         +  I+ +     +     + S   +R+
Sbjct: 29  ALADVSDAKNILEVGTGTGLVALMTAQRNPTSNITAIDVNPVAAELAAKNFLESHFGHRM 88

Query: 98  EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
                 A+  D++ F        II+N PY     
Sbjct: 89  R-----AMHCDYKTFGTQKKFDLIISNPPYFETNP 118


>gi|256822089|ref|YP_003146052.1| protein-L-isoaspartate O-methyltransferase [Kangiella koreensis DSM
           16069]
 gi|256795628|gb|ACV26284.1| protein-L-isoaspartate O-methyltransferase [Kangiella koreensis DSM
           16069]
          Length = 222

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 14/134 (10%)

Query: 33  LNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91
             I+ ++ ++   S     V+EIG G G  T +L  L  + V  +E+       L   + 
Sbjct: 72  PYIVARMTQALLESGSMNKVLEIGTGCGYQTAILSKLC-KTVFTVER----IRALHMQAR 126

Query: 92  QHPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWES 149
           +   +L I     L  D    +  ++P    I+   P +I  +L+    +          
Sbjct: 127 KTLGQLNIHNVQYLFADGFNGWQQNAPFDAIIVTAAPPSIPEKLMAQLANGG------RM 180

Query: 150 LTLLFQKEVGERIT 163
           +  + Q E  + + 
Sbjct: 181 VIPVGQTETAQELI 194


>gi|188534363|ref|YP_001908160.1| Putative cyclopropane-fatty-acyl-phospholipid synthase [Erwinia
           tasmaniensis Et1/99]
 gi|188029405|emb|CAO97282.1| Putative cyclopropane-fatty-acyl-phospholipid synthase [Erwinia
           tasmaniensis Et1/99]
          Length = 414

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 8/69 (11%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
           +++ +         ++EIG+G G + +        +V      ++ +    +   ++   
Sbjct: 182 RRLCDQLALGPQDHLLEIGSGWGAMAEYAAREYGCRVTTTTISREQYEYSCERIAAAGLT 241

Query: 95  NRLEIIQDD 103
           +R+ ++ +D
Sbjct: 242 DRVTVLCED 250


>gi|154253432|ref|YP_001414256.1| cyclopropane-fatty-acyl-phospholipid synthase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157382|gb|ABS64599.1| Cyclopropane-fatty-acyl-phospholipid synthase [Parvibaculum
           lavamentivorans DS-1]
          Length = 421

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 43/120 (35%), Gaps = 17/120 (14%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP 94
           + +AES        ++EIG+G G   +   +    +V  +   ++     ++   +    
Sbjct: 195 RSLAESIDLKPEHHLLEIGSGWGGFAEYAASEIGCRVTGVTISKEQLAFARERMEKKGLS 254

Query: 95  NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
           ++++I   D   +D                    I +  +F  +  + WP ++E +    
Sbjct: 255 DKVDIRYQDYRDIDER---------------FDRIASIEMFEAVGEEYWPTYFEKVRNCL 299


>gi|146312855|ref|YP_001177929.1| protein-L-isoaspartate O-methyltransferase [Enterobacter sp. 638]
 gi|166987990|sp|A4WDU8|PIMT_ENT38 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|145319731|gb|ABP61878.1| protein-L-isoaspartate O-methyltransferase [Enterobacter sp. 638]
          Length = 208

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L    V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLELTPESRVLEIGTGSGYQTAILAHL-VHHVCSVER----IKGLQWHARR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNW 137
              +L++        D    +   +P    I+   P  I   LL   
Sbjct: 116 RLKQLDLHNVSTRHGDGWLGWQARAPFDAIIVTAAPLEIPAALLSQL 162


>gi|91763133|ref|ZP_01265097.1| cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717546|gb|EAS84197.1| cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 396

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           QN     N ++ I +         V++IG G G+L   +      +V  I
Sbjct: 157 QN-----NKIQHIIKKLNIKPNQKVLDIGCGWGSLAIDIAKSNNCEVTGI 201


>gi|49483838|ref|YP_041062.1| hypothetical protein SAR1668 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425715|ref|ZP_05602139.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428376|ref|ZP_05604774.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431013|ref|ZP_05607393.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433701|ref|ZP_05610059.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436615|ref|ZP_05612659.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282904172|ref|ZP_06312060.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905999|ref|ZP_06313854.1| methyltransferase type 12 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908910|ref|ZP_06316728.1| methyltransferase type 12 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911228|ref|ZP_06319030.1| methyltransferase type 12 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914397|ref|ZP_06322183.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282919366|ref|ZP_06327101.1| hypothetical protein SASG_00672 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924691|ref|ZP_06332359.1| hypothetical protein SARG_02239 [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958354|ref|ZP_06375805.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503471|ref|ZP_06667318.1| hypothetical protein SCAG_01993 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510488|ref|ZP_06669194.1| hypothetical protein SAZG_01618 [Staphylococcus aureus subsp.
           aureus M809]
 gi|293531028|ref|ZP_06671710.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428168|ref|ZP_06820800.1| hypothetical protein SIAG_00696 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590866|ref|ZP_06949504.1| methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|49241967|emb|CAG40662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271409|gb|EEV03555.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275217|gb|EEV06704.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278443|gb|EEV09079.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281794|gb|EEV11931.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283966|gb|EEV14089.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313526|gb|EFB43921.1| hypothetical protein SARG_02239 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317176|gb|EFB47550.1| hypothetical protein SASG_00672 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321578|gb|EFB51903.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282324923|gb|EFB55233.1| methyltransferase type 12 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327174|gb|EFB57469.1| methyltransferase type 12 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331291|gb|EFB60805.1| methyltransferase type 12 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595790|gb|EFC00754.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790503|gb|EFC29320.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920296|gb|EFD97362.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095137|gb|EFE25402.1| hypothetical protein SCAG_01993 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466852|gb|EFF09372.1| hypothetical protein SAZG_01618 [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128526|gb|EFG58160.1| hypothetical protein SIAG_00696 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575752|gb|EFH94468.1| methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437941|gb|ADQ77012.1| methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195493|gb|EFU25880.1| hypothetical protein CGSSa00_07480 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 238

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            D   +++IG G G+LT  L  LG   V  ++       +    ++Q    +  ++ D  
Sbjct: 32  KDESNILDIGCGTGSLTVQLEALG--NVTGMDLSVDMLTV----AAQKSANVNWLEGDMT 85

Query: 106 KVDFEKFFNI 115
             D ++ F+I
Sbjct: 86  SFDLQQQFDI 95


>gi|21283271|ref|NP_646359.1| hypothetical protein MW1542 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486425|ref|YP_043646.1| hypothetical protein SAS1528 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651983|ref|YP_186487.1| hypothetical protein SACOL1647 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87162113|ref|YP_494245.1| hypothetical protein SAUSA300_1550 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195400|ref|YP_500204.1| hypothetical protein SAOUHSC_01694 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221705|ref|YP_001332527.1| hypothetical protein NWMN_1493 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509819|ref|YP_001575478.1| hypothetical protein USA300HOU_1592 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141138|ref|ZP_03565631.1| hypothetical protein SauraJ_05798 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253732244|ref|ZP_04866409.1| methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733158|ref|ZP_04867323.1| methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|258450581|ref|ZP_05698643.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262048590|ref|ZP_06021473.1| hypothetical protein SAD30_0986 [Staphylococcus aureus D30]
 gi|262051249|ref|ZP_06023473.1| hypothetical protein SA930_1680 [Staphylococcus aureus 930918-3]
 gi|269203218|ref|YP_003282487.1| hypothetical protein SAAV_1582 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282916861|ref|ZP_06324619.1| hypothetical protein SATG_00354 [Staphylococcus aureus subsp.
           aureus D139]
 gi|282920139|ref|ZP_06327864.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|283770666|ref|ZP_06343558.1| methyltransferase type 12 [Staphylococcus aureus subsp. aureus H19]
 gi|284024649|ref|ZP_06379047.1| hypothetical protein Saura13_08660 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848621|ref|ZP_06789367.1| hypothetical protein SKAG_00688 [Staphylococcus aureus A9754]
 gi|296276605|ref|ZP_06859112.1| hypothetical protein SauraMR_09659 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207690|ref|ZP_06924125.1| methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911771|ref|ZP_07129214.1| methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204711|dbj|BAB95407.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244868|emb|CAG43329.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286169|gb|AAW38263.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|87128087|gb|ABD22601.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202958|gb|ABD30768.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374505|dbj|BAF67765.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368628|gb|ABX29599.1| hypothetical protein USA300HOU_1592 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724033|gb|EES92762.1| methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728914|gb|EES97643.1| methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257861739|gb|EEV84538.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259160886|gb|EEW45906.1| hypothetical protein SA930_1680 [Staphylococcus aureus 930918-3]
 gi|259163237|gb|EEW47796.1| hypothetical protein SAD30_0986 [Staphylococcus aureus D30]
 gi|262075508|gb|ACY11481.1| hypothetical protein SAAV_1582 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282319348|gb|EFB49700.1| hypothetical protein SATG_00354 [Staphylococcus aureus subsp.
           aureus D139]
 gi|282594487|gb|EFB99472.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|283460813|gb|EFC07903.1| methyltransferase type 12 [Staphylococcus aureus subsp. aureus H19]
 gi|294824647|gb|EFG41070.1| hypothetical protein SKAG_00688 [Staphylococcus aureus A9754]
 gi|296887707|gb|EFH26605.1| methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886017|gb|EFK81219.1| methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751420|gb|ADL65597.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|315198712|gb|EFU29040.1| hypothetical protein CGSSa01_09329 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320144061|gb|EFW35830.1| methyltransferase domain protein [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323438556|gb|EGA96303.1| hypothetical protein SAO11_2599 [Staphylococcus aureus O11]
 gi|323442795|gb|EGB00420.1| hypothetical protein SAO46_1232 [Staphylococcus aureus O46]
 gi|329314266|gb|AEB88679.1| Methyltransferase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728367|gb|EGG64804.1| methyltransferase domain protein [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733098|gb|EGG69435.1| methyltransferase domain protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 238

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            D   +++IG G G+LT  L  LG   V  ++       +    ++Q    +  ++ D  
Sbjct: 32  KDESNILDIGCGTGSLTVQLEALG--NVTGMDLSVDMLTV----AAQKSANVNWLEGDMT 85

Query: 106 KVDFEKFFNI 115
             D ++ F+I
Sbjct: 86  SFDLQQQFDI 95


>gi|15924581|ref|NP_372115.1| hypothetical protein SAV1591 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927171|ref|NP_374704.1| hypothetical protein SA1419 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268074|ref|YP_001247017.1| hypothetical protein SaurJH9_1648 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394143|ref|YP_001316818.1| hypothetical protein SaurJH1_1683 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979909|ref|YP_001442168.1| hypothetical protein SAHV_1578 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315372|ref|ZP_04838585.1| hypothetical protein SauraC_04317 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006376|ref|ZP_05144977.2| hypothetical protein SauraM_07905 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257793667|ref|ZP_05642646.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258411034|ref|ZP_05681314.1| methyltransferase [Staphylococcus aureus A9763]
 gi|258420163|ref|ZP_05683118.1| methyltransferase type 12 [Staphylococcus aureus A9719]
 gi|258437422|ref|ZP_05689406.1| methyltransferase type 12 [Staphylococcus aureus A9299]
 gi|258443628|ref|ZP_05691967.1| methyltransferase type 12 [Staphylococcus aureus A8115]
 gi|258446836|ref|ZP_05694990.1| methyltransferase type 12 [Staphylococcus aureus A6300]
 gi|258448750|ref|ZP_05696862.1| methyltransferase type 12 [Staphylococcus aureus A6224]
 gi|258453567|ref|ZP_05701545.1| methyltransferase type 12 [Staphylococcus aureus A5937]
 gi|282893092|ref|ZP_06301326.1| hypothetical protein SGAG_00446 [Staphylococcus aureus A8117]
 gi|295406714|ref|ZP_06816519.1| hypothetical protein SMAG_01884 [Staphylococcus aureus A8819]
 gi|297245704|ref|ZP_06929569.1| hypothetical protein SLAG_01799 [Staphylococcus aureus A8796]
 gi|13701389|dbj|BAB42683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247362|dbj|BAB57753.1| similar to methyltransferase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741143|gb|ABQ49441.1| Methyltransferase type 12 [Staphylococcus aureus subsp. aureus JH9]
 gi|149946595|gb|ABR52531.1| Methyltransferase type 12 [Staphylococcus aureus subsp. aureus JH1]
 gi|156722044|dbj|BAF78461.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257787639|gb|EEV25979.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257840184|gb|EEV64648.1| methyltransferase [Staphylococcus aureus A9763]
 gi|257843874|gb|EEV68268.1| methyltransferase type 12 [Staphylococcus aureus A9719]
 gi|257848627|gb|EEV72615.1| methyltransferase type 12 [Staphylococcus aureus A9299]
 gi|257851034|gb|EEV74977.1| methyltransferase type 12 [Staphylococcus aureus A8115]
 gi|257854411|gb|EEV77360.1| methyltransferase type 12 [Staphylococcus aureus A6300]
 gi|257858028|gb|EEV80917.1| methyltransferase type 12 [Staphylococcus aureus A6224]
 gi|257864298|gb|EEV87048.1| methyltransferase type 12 [Staphylococcus aureus A5937]
 gi|282764410|gb|EFC04536.1| hypothetical protein SGAG_00446 [Staphylococcus aureus A8117]
 gi|285817273|gb|ADC37760.1| Ubiquinone/menaquinone biosynthesis methyltransferase UbiE/ COQ5
           [Staphylococcus aureus 04-02981]
 gi|294968461|gb|EFG44485.1| hypothetical protein SMAG_01884 [Staphylococcus aureus A8819]
 gi|297177355|gb|EFH36607.1| hypothetical protein SLAG_01799 [Staphylococcus aureus A8796]
 gi|312829978|emb|CBX34820.1| methyltransferase domain protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129869|gb|EFT85859.1| hypothetical protein CGSSa03_02248 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727661|gb|EGG64117.1| methyltransferase domain protein [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 238

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105
            D   +++IG G G+LT  L  LG   V  ++       +    ++Q    +  ++ D  
Sbjct: 32  KDESNILDIGCGTGSLTVQLEALG--NVTGMDLSVDMLTV----AAQKSANVNWLEGDMT 85

Query: 106 KVDFEKFFNI 115
             D ++ F+I
Sbjct: 86  SFDLQQQFDI 95


>gi|237795337|ref|YP_002862889.1| site-specific recombinase [Clostridium botulinum Ba4 str. 657]
 gi|229261813|gb|ACQ52846.1| site-specific recombinase [Clostridium botulinum Ba4 str. 657]
          Length = 376

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 18/86 (20%)

Query: 200 KVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S ++   +P   P     E ++ + +            +L+     +LL++ G    
Sbjct: 157 KVASNILKLKVPKSKPKTLNKEEIETLVRAC---------NNLRDKFLLSLLYETG---- 203

Query: 259 LR-AENLS--IEDFCRITNILTDNQD 281
           +R  E LS  IEDF  I++++ D +D
Sbjct: 204 MRIGEALSLWIEDF-DISDMVIDLKD 228


>gi|149642929|ref|NP_001092605.1| methyltransferase-like protein 5 [Bos taurus]
 gi|148753330|gb|AAI42085.1| METTL5 protein [Bos taurus]
 gi|296490652|gb|DAA32765.1| methyltransferase like 5 [Bos taurus]
          Length = 209

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 10/133 (7%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I  + G ++   V ++G G G L+     LGA   +  + D+       +I +++    E
Sbjct: 43  IHNTYGDIENKVVADLGCGCGVLSIGTAMLGAGLCVGFDIDEDAL----EIFNRNVEEFE 98

Query: 99  IIQDDALKVDFEKFFNISSP--IRIIANLPY----NIGTRLLFNWISADTWPPFWESLTL 152
           +   D ++ D     N  S     +I N P+    N GT + F   + +       SL  
Sbjct: 99  LTNVDVVQCDVCSLSNRMSKSFDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHK 158

Query: 153 LFQKEVGERITAQ 165
              +E  ++  A+
Sbjct: 159 SSTREHIQKKAAE 171


>gi|118476849|ref|YP_894000.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|225863236|ref|YP_002748614.1| hypothetical protein BCA_1326 [Bacillus cereus 03BB102]
 gi|118416074|gb|ABK84493.1| probable methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|225790786|gb|ACO31003.1| conserved hypothetical protein [Bacillus cereus 03BB102]
          Length = 251

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 14/125 (11%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              +   V +IG+G G  ++ LL  G   VI +E +     + +    ++P R + I+  
Sbjct: 34  ELNENQIVADIGSGTGIFSRQLLDSG-LHVIGVEPNDDMRKMAEQSLKRYP-RFQSIKAT 91

Query: 104 A----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--------WISADTWPPFWESLT 151
           A    LK +      ++          + I  + +          W S D   P  +   
Sbjct: 92  AENTTLKENSVDLVTVAQAFHWFDKEAFKIECQRILKQKANVALVWNSRDVTSPLIKENA 151

Query: 152 LLFQK 156
            + QK
Sbjct: 152 EICQK 156


>gi|91762349|ref|ZP_01264314.1| probable 3-demethylubiquinone-9 3-O-methyltransferase [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91718151|gb|EAS84801.1| probable 3-demethylubiquinone-9 3-O-methyltransferase [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 240

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 33  LNILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            NI+K  KI  S   L  I +++IG G G L++ +  LGA  V+ I+  ++   + K   
Sbjct: 42  ENIIKDFKIRSSDKPLKNIKLLDIGCGGGLLSEPMCRLGA-SVVGIDASKKNIEVAK--F 98

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               N+L+I   D  KV   +         +I N+
Sbjct: 99  HAKKNKLKI---D-YKVASPEMLKDKKKFDVILNM 129


>gi|87310292|ref|ZP_01092423.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Blastopirellula marina DSM 3645]
 gi|87287041|gb|EAQ78944.1| cyclopropane-fatty-acyl-phospholipid synthase, putative
           [Blastopirellula marina DSM 3645]
          Length = 331

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 11/139 (7%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK----VIVIEKDQQFFPILKDISS 91
           L+K  E +G  DG+ V+E+G G G+L+  +           V      ++F         
Sbjct: 91  LRKTCEHAGLADGMEVLELGCGWGSLSLWMAENYPLSRITAVSNSNSQREFIQ--AQALQ 148

Query: 92  QHPNRLEIIQDDALKVDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISAD----TWPPF 146
           +  + L +I  D  +   ++ F+ + S         +    R + +W+  D         
Sbjct: 149 RGLHNLSVITADMNEFATDQTFDRVVSVEMFEHMRNHRELMRRIHDWLRPDGRLFVHIFC 208

Query: 147 WESLTLLFQKEVGERITAQ 165
              +  LFQ E       +
Sbjct: 209 HRDMPYLFQSEGTRNWMGR 227


>gi|30261377|ref|NP_843754.1| hypothetical protein BA_1282 [Bacillus anthracis str. Ames]
 gi|47526548|ref|YP_017897.1| hypothetical protein GBAA_1282 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184206|ref|YP_027458.1| hypothetical protein BAS1188 [Bacillus anthracis str. Sterne]
 gi|65318642|ref|ZP_00391601.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str.
           A2012]
 gi|167634422|ref|ZP_02392743.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167639293|ref|ZP_02397565.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170686742|ref|ZP_02877962.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170706319|ref|ZP_02896780.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177651396|ref|ZP_02934185.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|229603394|ref|YP_002865794.1| hypothetical protein BAA_1355 [Bacillus anthracis str. A0248]
 gi|254682566|ref|ZP_05146427.1| hypothetical protein BantC_01773 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254726227|ref|ZP_05188009.1| hypothetical protein BantA1_27850 [Bacillus anthracis str. A1055]
 gi|254733984|ref|ZP_05191698.1| hypothetical protein BantWNA_02266 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740329|ref|ZP_05198020.1| hypothetical protein BantKB_04803 [Bacillus anthracis str. Kruger
           B]
 gi|254753716|ref|ZP_05205751.1| hypothetical protein BantV_14663 [Bacillus anthracis str. Vollum]
 gi|254758812|ref|ZP_05210839.1| hypothetical protein BantA9_10939 [Bacillus anthracis str.
           Australia 94]
 gi|30255231|gb|AAP25240.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47501696|gb|AAT30372.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178133|gb|AAT53509.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|167512732|gb|EDR88106.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167530310|gb|EDR93036.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170128853|gb|EDS97719.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170669265|gb|EDT20008.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172082674|gb|EDT67737.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|229267802|gb|ACQ49439.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 251

 Score = 35.6 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 14/125 (11%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
              +   V +IG+G G  ++ LL  G   VI +E +     + +    ++P R + I+  
Sbjct: 34  ELNENQIVADIGSGTGIFSRQLLDSG-LHVIGVEPNDDMRKMAEQSLKRYP-RFQSIKAT 91

Query: 104 A----LKVDFEKFFNISSPIRIIANLPYNIGTRLLFN--------WISADTWPPFWESLT 151
           A    LK +      ++          + I  + +          W S D   P  +   
Sbjct: 92  AENTTLKENSVDLVTVAQAFHWFDKEAFKIECQRILKQKANVALVWNSRDVTSPLIKENA 151

Query: 152 LLFQK 156
            + QK
Sbjct: 152 EICQK 156


>gi|330466247|ref|YP_004403990.1| modification methylase, HemK family protein [Verrucosispora maris
           AB-18-032]
 gi|328809218|gb|AEB43390.1| modification methylase, HemK family protein [Verrucosispora maris
           AB-18-032]
          Length = 272

 Score = 35.6 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 47  DGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD-- 102
               V+E+  G G LT+ L       R +  ++ D       +   ++    + +     
Sbjct: 94  PAARVVELCCGSGALTRALARRLHAPRLLAAVDVDPAAVACARGNLAELA--VPVYAGDL 151

Query: 103 -DALKVDFEKFFNISSPIRIIANLPYNIGTRL 133
            DAL   +    ++     ++AN PY     L
Sbjct: 152 FDALPATWRGTLDL-----VVANAPYVPTAAL 178


>gi|260433509|ref|ZP_05787480.1| protein-L-isoaspartate O-methyltransferase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417337|gb|EEX10596.1| protein-L-isoaspartate O-methyltransferase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 216

 Score = 35.6 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
            +++  + ++        V+E+G G G    +L  L AR+V  +E+ ++      ++  +
Sbjct: 64  PSVVGLMTQALQVTPRDKVLEVGTGSGYQAAVLAKL-ARRVYTVERHKRLVRETGELFRE 122

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
               L +    A+  D        +P   I
Sbjct: 123 ----LGLTNITAMHSDGSFGLPEQAPFDRI 148


>gi|256821840|ref|YP_003145803.1| cyclopropane fatty acyl phospholipid synthase [Kangiella koreensis
           DSM 16069]
 gi|256795379|gb|ACV26035.1| Cyclopropane-fatty-acyl-phospholipid synthase [Kangiella koreensis
           DSM 16069]
          Length = 388

 Score = 35.6 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 9/98 (9%)

Query: 30  LLDLNI--LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87
           L++  I  L  I        G  V++IG G G   +         V  I   ++   + +
Sbjct: 148 LIEAQIAKLDLICRKLELKPGEKVLDIGCGWGGFARYAAEQYGVSVDGITVSKEQQQLAQ 207

Query: 88  DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
                 P  +++        D+ +       I  I   
Sbjct: 208 KRCEGFPVTIKL-------QDYRELSGEYDKIVSIGMF 238


>gi|222529217|ref|YP_002573099.1| methyltransferase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456064|gb|ACM60326.1| methyltransferase [Caldicellulosiruptor bescii DSM 6725]
          Length = 184

 Score = 35.6 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEK 111
           AG GN+    L+ G R+V  +EKD +   ++K+         R  II+ D ++    K
Sbjct: 51  AGTGNVGIEFLSRGVREVTFVEKDVRCINLIKENLKNLDLLKRARIIKGDVIRFLKSK 108


>gi|170693028|ref|ZP_02884189.1| protein-L-isoaspartate O-methyltransferase [Burkholderia graminis
           C4D1M]
 gi|170142026|gb|EDT10193.1| protein-L-isoaspartate O-methyltransferase [Burkholderia graminis
           C4D1M]
          Length = 235

 Score = 35.6 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + E++       V+++G G G     +    +  V  IE+      + +DI ++
Sbjct: 64  PAIVATMIEAAELSSADIVLDVGTGSGYA-AAVAAALSAHVHSIERHADLVAMARDILAR 122

Query: 93  HP-NRLEIIQDD 103
              + + +   D
Sbjct: 123 LNISNVTVYLGD 134


>gi|170758955|ref|YP_001787247.1| site-specific recombinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405944|gb|ACA54355.1| site-specific recombinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 376

 Score = 35.6 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 18/86 (20%)

Query: 200 KVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KVTS ++   +P   P     E ++ + +            +L+     +LL++ G    
Sbjct: 157 KVTSNILKLKVPKSKPKILNKEEIEMLVRAC---------NNLRDKFLLSLLYETG---- 203

Query: 259 LR-AENLS--IEDFCRITNILTDNQD 281
           +R  E LS  IEDF  I++++ D +D
Sbjct: 204 MRIGEALSLWIEDF-DISDMIIDLKD 228


>gi|168182741|ref|ZP_02617405.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
 gi|168183287|ref|ZP_02617951.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Bf]
 gi|168184606|ref|ZP_02619270.1| ribose-5-phosphate isomerase B [Clostridium botulinum Bf]
 gi|168185180|ref|ZP_02619844.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
 gi|168185221|ref|ZP_02619885.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
 gi|168185244|ref|ZP_02619908.1| phage integrase family protein [Clostridium botulinum Bf]
 gi|182671698|gb|EDT83659.1| phage integrase family protein [Clostridium botulinum Bf]
 gi|182671743|gb|EDT83704.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
 gi|182671771|gb|EDT83732.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
 gi|182672361|gb|EDT84322.1| ribose-5-phosphate isomerase B [Clostridium botulinum Bf]
 gi|182673592|gb|EDT85553.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Bf]
 gi|182674242|gb|EDT86203.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
          Length = 376

 Score = 35.6 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 18/86 (20%)

Query: 200 KVTSTVIHF-IPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258
           KV S ++   +P   P     E ++ + +            +L+     +LL++ G    
Sbjct: 157 KVASNILKLKVPKSKPKTLNKEEIETLVRAC---------NNLRDKFLLSLLYETG---- 203

Query: 259 LR-AENLS--IEDFCRITNILTDNQD 281
           +R  E LS  IEDF  I++++ D +D
Sbjct: 204 MRIGEALSLWIEDF-DISDMVIDLKD 228


>gi|86358458|ref|YP_470350.1| S-adenosyl-methyltransferase MraW [Rhizobium etli CFN 42]
 gi|123511371|sp|Q2K6B3|RSMH_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86282560|gb|ABC91623.1| S-adenosyl-methyltransferase protein [Rhizobium etli CFN 42]
          Length = 341

 Score = 35.6 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             +L ++  +     G  +++   G G  +  +L  GA +VI +++D       + + + 
Sbjct: 21  PVLLNEVLAALSPAPGKLILDGTFGAGGYSAAILAAGA-EVIALDRDPSAIAAGQAMVAA 79

Query: 93  HPNRLEIIQDDA 104
           H  RL +I    
Sbjct: 80  HAGRLRLIHAQF 91


>gi|88704246|ref|ZP_01101960.1| tRNA (uracil-5-)-methyltransferase/TrmA [Congregibacter litoralis
           KT71]
 gi|88701297|gb|EAQ98402.1| tRNA (uracil-5-)-methyltransferase/TrmA [Congregibacter litoralis
           KT71]
          Length = 393

 Score = 35.6 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89
           A    +     V+E+ AG GN T++L   G + ++ ++        LK+ 
Sbjct: 241 ARVLEAGPPDHVLELFAGSGNFTEVLEEAGCKHIVAVDSFLPAIERLKER 290


>gi|332201189|gb|EGJ15260.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           GA47901]
          Length = 306

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +     + +   
Sbjct: 158 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNTGMENIHVAAG 217

Query: 103 DALK 106
           D LK
Sbjct: 218 DLLK 221


>gi|332074132|gb|EGI84610.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           GA41301]
          Length = 316

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +     + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNTGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|328952885|ref|YP_004370219.1| Protein-L-isoaspartate O-methyltransferase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453209|gb|AEB09038.1| Protein-L-isoaspartate O-methyltransferase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 221

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISS 91
             I+  + E+   L    V+EIGAG G    +L  L A +V  IE+        +  + S
Sbjct: 71  PYIVALMTEALELLGTEKVLEIGAGSGYQAAILAELAA-QVFSIERIPALASRARRNLES 129

Query: 92  QHPNRLEIIQDD 103
                ++I   D
Sbjct: 130 LRYFNVKIKVGD 141


>gi|322829691|gb|EFZ32994.1| hypothetical protein TCSYLVIO_636 [Trypanosoma cruzi]
          Length = 598

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKV---------IVIEKDQQFFPILKDISSQHP 94
              + + V +IGAG G L   +L   A             V+E++ Q   +L++    H 
Sbjct: 263 DPREPLVVYDIGAGTGALAVSVLDYLAEHFSAVYAQCEYHVVEQNPQLVQVLRNRLITHY 322

Query: 95  NRLEIIQDDALKV 107
           + ++I     L  
Sbjct: 323 HHVKIHNISILNW 335


>gi|312127711|ref|YP_003992585.1| methyltransferase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777730|gb|ADQ07216.1| methyltransferase [Caldicellulosiruptor hydrothermalis 108]
          Length = 184

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEK 111
           AG GN+    L+ G R+V  +EKD +   ++K+         R  II+ D ++    K
Sbjct: 51  AGTGNVGIEFLSRGVREVTFVEKDVRCINLIKENLKNLDLLKRARIIKGDVIRFLKSK 108


>gi|303254707|ref|ZP_07340809.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           BS455]
 gi|302598419|gb|EFL65463.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           BS455]
          Length = 316

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +     + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNTGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|302871972|ref|YP_003840608.1| methyltransferase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574831|gb|ADL42622.1| methyltransferase [Caldicellulosiruptor obsidiansis OB47]
          Length = 184

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 56  AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEK 111
           AG GN+    L+ GA++V+ +EKD +   ++K+         R  II+ D ++    K
Sbjct: 51  AGTGNVGIEFLSRGAKEVVFVEKDVRCINLIKENLKNLNLLKRARIIKADVIRFLKSK 108


>gi|301794755|emb|CBW37208.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           INV104]
          Length = 316

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +     + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNTGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|225861587|ref|YP_002743096.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|307127981|ref|YP_003880012.1| 50S ribosomal protein L11 methyltransferase [Streptococcus
           pneumoniae 670-6B]
 gi|254783320|sp|C1CT24|PRMA_STRZT RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|225727731|gb|ACO23582.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|306485043|gb|ADM91912.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|327389951|gb|EGE88296.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           GA04375]
 gi|332200329|gb|EGJ14402.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           GA47368]
          Length = 316

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +     + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNTGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|149639520|ref|XP_001514825.1| PREDICTED: similar to DC3 [Ornithorhynchus anatinus]
          Length = 209

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 6/120 (5%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I  +   ++   V ++G G G L+     LGA   +  + D+       +I S++    E
Sbjct: 43  IHNTYDDIEDKVVADLGCGCGVLSIGSAMLGAGLCVGFDIDEDAL----EIFSRNVEEFE 98

Query: 99  IIQDDALKVDFEKFFNISSP--IRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156
           +   D ++ +     +  S     +I N P+        + +   T      +      K
Sbjct: 99  LTNIDMIQSNVCSLPDRMSKSFDTVIMNPPFGTKHNKGMDMLFLKTALQLARTAVYSLHK 158


>gi|148990496|ref|ZP_01821637.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924254|gb|EDK75350.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
           SP6-BS73]
          Length = 316

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN--RLEIIQD 102
              G TV+++G G G L+     LGA+++   + D     + ++    +     + +   
Sbjct: 168 LRGGETVLDVGTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNTGMENIHVAAG 227

Query: 103 DALK 106
           D LK
Sbjct: 228 DLLK 231


>gi|115378992|ref|ZP_01466123.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|115363996|gb|EAU63100.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
          Length = 228

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 33/170 (19%)

Query: 50  TVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQDDALK 106
            +I++G G G +  +L    G R+V  +E   + + + +     ++   ++ ++Q D  +
Sbjct: 31  RLIDLGTGSGIIPLVLAKRLGLREVTGLELQPRLYSLAERNVYLNRCEQQVTLVQGDLRQ 90

Query: 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERI---- 162
           V   + F   S   ++ N PY           +  T          + + EV   +    
Sbjct: 91  V--SRLFAAGSFCHVLCNPPYR----------ACATGRSSVMMERAIARHEVACSLPDVA 138

Query: 163 -TAQKNSPHYGRLS-------------VLTGWRTKATMMFDISPHVFFPS 198
             A+      G LS             VL   R +   +  + P    P+
Sbjct: 139 RAARHLLTPRGGLSLVYPAARFAELVAVLREHRLEPKTVRMVHPRAERPA 188


>gi|71083221|ref|YP_265940.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|109895677|sp|Q4FNA2|UBIG_PELUB RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|71062334|gb|AAZ21337.1| probable 3-demethylubiquinone-9 3-O-methyltransferase RP622
           [Candidatus Pelagibacter ubique HTCC1062]
          Length = 240

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 33  LNILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90
            NI+K  KI  S   L  I +++IG G G L++ +  LGA  V+ I+  ++   + K   
Sbjct: 42  ENIIKDFKIRSSDKPLKNIKLLDIGCGGGLLSEPMCRLGA-SVVGIDASKKNIEVAK--F 98

Query: 91  SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125
               N+L+I   D  KV   +         +I N+
Sbjct: 99  HAKKNKLKI---D-YKVASPEMLKDKKKFDVILNM 129


>gi|91978674|ref|YP_571333.1| methyltransferase type 12 [Rhodopseudomonas palustris BisB5]
 gi|91685130|gb|ABE41432.1| Methyltransferase type 12 [Rhodopseudomonas palustris BisB5]
          Length = 208

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
                  V+EIG G G+ T + L   A + I  +   +   I    +   P  L  +  D
Sbjct: 38  RLRPTDRVLEIGCGTGS-TAIRLAPHAAEWIATDFSAEMLRI--ACAKPAPGNLRFVLAD 94

Query: 104 A 104
           A
Sbjct: 95  A 95


>gi|71663853|ref|XP_818914.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884191|gb|EAN97063.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 598

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKV---------IVIEKDQQFFPILKDISSQHP 94
              + + V +IGAG G L   +L   A             V+E++ Q   +L++    H 
Sbjct: 263 DPREPLVVYDIGAGTGALAVSVLDYLAEHFSAVYAQCEYHVVEQNPQLVQVLRNRLITHY 322

Query: 95  NRLEIIQDDALKV 107
           + ++I     L  
Sbjct: 323 HHVKIHNISILNW 335


>gi|71409294|ref|XP_807000.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70870901|gb|EAN85149.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 598

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKV---------IVIEKDQQFFPILKDISSQHP 94
              + + V +IGAG G L   +L   A             V+E++ Q   +L++    H 
Sbjct: 263 DPREPLVVYDIGAGTGALAVSVLDYLAEHFSAVYAQCEYHVVEQNPQLVQVLRNRLITHY 322

Query: 95  NRLEIIQDDALKV 107
           + ++I     L  
Sbjct: 323 HHVKIHNISILNW 335


>gi|327400369|ref|YP_004341208.1| type 11 methyltransferase [Archaeoglobus veneficus SNP6]
 gi|327315877|gb|AEA46493.1| Methyltransferase type 11 [Archaeoglobus veneficus SNP6]
          Length = 205

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEK 78
           + +    G TV+E+G G G  T  ++   G   V+ ++ 
Sbjct: 38 VDMAEVHSGDTVLEVGCGTGFTTAEIVRRVGEENVVAVDL 77


>gi|323699237|ref|ZP_08111149.1| tRNA (adenine-N(1)-)-methyltransferase [Desulfovibrio sp. ND132]
 gi|323459169|gb|EGB15034.1| tRNA (adenine-N(1)-)-methyltransferase [Desulfovibrio desulfuricans
           ND132]
          Length = 293

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEI- 99
            G   G TVIE G G G LT  L        KVI  E+   F+ +      +      + 
Sbjct: 90  LGIGPGSTVIESGTGSGGLTTALAWFVGDTGKVITYERRADFYKLAGKNLERVGLAHRVE 149

Query: 100 -----IQDDALKVDFEKFF-NISSPIRIIANLP 126
                I+D  L    +  F ++ +P   +  +P
Sbjct: 150 QVNRNIEDGFLHSGADALFLDVRTPWEYLGAIP 182


>gi|305432770|ref|ZP_07401929.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Campylobacter coli JV20]
 gi|304444167|gb|EFM36821.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Campylobacter coli JV20]
          Length = 209

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 18/151 (11%)

Query: 29  FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88
           ++     + K+  +    D  +V+EIG G G     +L+   R+V  IE+       L  
Sbjct: 58  WISSPLTVAKMTMALNFKDADSVLEIGCGSGY-QAAILSKIIRRVFTIER----IENLAK 112

Query: 89  ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR-LLFNWIS-------- 139
            ++Q    LE+   +    D +  +   +P   I    Y      +L + +S        
Sbjct: 113 KAAQTFRELELFNINVKFEDGQNGWKNYAPYDRILFSAYTTQLPEILLDQLSDGGILVAP 172

Query: 140 ----ADTWPPFWESLTLLFQKEVGERITAQK 166
                  +           QKE+ E      
Sbjct: 173 ILHNGKQFITRITKNGTHLQKEILEECLFVP 203


>gi|298245425|ref|ZP_06969231.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297552906|gb|EFH86771.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 258

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 36  LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-HP 94
           L+ + E++       V+++  G G+ T + L   AR+V+ I+         + ++ + H 
Sbjct: 32  LQWLVEAARLDGSEVVVDVATGTGH-TALALAPHAREVVAIDFTAPMLEAGRKLAQERHI 90

Query: 95  NRLEIIQDDA 104
             +  I+ DA
Sbjct: 91  ANVRFIEGDA 100


>gi|297159178|gb|ADI08890.1| DNA-cytosine methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 386

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDF 109
           +EI AG G     L   G R + +IE D      L+   + +P     ++++ D  K D 
Sbjct: 11  VEICAGAGGQAVGLHEAGFRHLALIEIDDNACETLELNVTGNPEWGDCKVLKRDLTKFDV 70

Query: 110 EKF-FNISSPIRIIANLP 126
            +   N      +   +P
Sbjct: 71  GELSLNPGELDLLAGGVP 88


>gi|302560608|ref|ZP_07312950.1| O-methyltransferase [Streptomyces griseoflavus Tu4000]
 gi|302478226|gb|EFL41319.1| O-methyltransferase [Streptomyces griseoflavus Tu4000]
          Length = 334

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
            G  DG  V+EIG G G    +L         V  ++ D       +       +R  ++
Sbjct: 112 LGLRDGQKVLEIGTGSGYNAALLAHRLGDDDLVTTVDLDPDITESARRHLDAAGHRPAVV 171

Query: 101 QDD 103
             D
Sbjct: 172 TGD 174


>gi|296135424|ref|YP_003642666.1| Methyltransferase type 11 [Thiomonas intermedia K12]
 gi|295795546|gb|ADG30336.1| Methyltransferase type 11 [Thiomonas intermedia K12]
          Length = 232

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 15/202 (7%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQ-QFFPILKDISSQHPNRL 97
           AE     +G+ VIE+G G   L   LL    A + + +E D  Q    L  +      RL
Sbjct: 10  AELVPIGNGLKVIELGCGSARLLTELLERCPACEALALEVDAVQHAKNLARLPEMLAPRL 69

Query: 98  EIIQDDALKVDFEK-FFNISSPIRIIANLPYN-IGTRL--LFNWISADTWPPFWESLTLL 153
             ++D A  +      F ++  ++ + ++P   + T L   +  +    W    E +   
Sbjct: 70  RFVRDSATAIPAADGGFELALMLKSLHHIPQGAMQTALAETWRVLRPGGWLYVSEPVYEG 129

Query: 154 FQKEVGERI-----TAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208
              ++ +                 R      W+  A   FD+  H     P   S     
Sbjct: 130 ALNDIVKLYNDEGPVRAAAQAALDRALSTGQWQQTAERRFDMPAHF----PNWESFEQRM 185

Query: 209 IPHLNPIPCCLESLKKITQEAF 230
           +          + L++  + AF
Sbjct: 186 LYPSFADHQITDDLRQRVKAAF 207


>gi|300770828|ref|ZP_07080705.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762101|gb|EFK58920.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 218

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83
           E      G  V+EIG G G  T +L+ LGA  V  IE+ +  +
Sbjct: 78  ELLHVKKGDKVLEIGTGSGYQTCILMELGAD-VYTIERQESLY 119


>gi|254519875|ref|ZP_05131931.1| ribosomal protein L11 methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226913624|gb|EEH98825.1| ribosomal protein L11 methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 313

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 14/106 (13%)

Query: 45  SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI---------LKDISSQHPN 95
             +  TV ++G G G L      LG++  + ++ D               L++I   + N
Sbjct: 175 VKEDSTVFDVGCGSGILAIAAAKLGSKMAVGVDLDPVAVESAKENVGYNNLENIQILYGN 234

Query: 96  RLEIIQDDALKVDFEKFFNI-----SSPIRIIANLPYNIGTRLLFN 136
            +E+I   A  V       +         R++ +  Y I + ++ +
Sbjct: 235 LVEVIDGKADIVVANIIAEVICILTEDVKRVLKDNGYFITSGIIHD 280


>gi|163793137|ref|ZP_02187113.1| protein-L-isoaspartate O-methyltransferase [alpha proteobacterium
           BAL199]
 gi|159181783|gb|EDP66295.1| protein-L-isoaspartate O-methyltransferase [alpha proteobacterium
           BAL199]
          Length = 217

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             I+  + ++    D   V+EIG G G     +L   AR+V  +E+  +   + +   + 
Sbjct: 63  PFIVAFMTQALELTDRTKVLEIGTGSGY-QAAVLARIARRVYTVERHPELLQVAEKRFAT 121

Query: 93  HP-NRLEIIQDDALKVDFEK 111
              + L     D  K   E+
Sbjct: 122 LKLHNLHSRHGDGWKGWAEQ 141


>gi|157959859|ref|YP_001499893.1| sun protein [Shewanella pealeana ATCC 700345]
 gi|157844859|gb|ABV85358.1| sun protein [Shewanella pealeana ATCC 700345]
          Length = 426

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLE 98
           A          V++  A PG  T  LL L    K++ ++ D +    ++    +   + E
Sbjct: 233 ATLLAPQGDELVLDACAAPGGKTCHLLELAPNIKLVAVDFDAKRLERVQQNLDRLSLKAE 292

Query: 99  IIQDDALKVDFEK 111
           ++  DA  +D   
Sbjct: 293 LVHGDAANIDSWW 305


>gi|114328924|ref|YP_746081.1| phosphatidyl-N-methylethanolamine N-methyltransferase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114317098|gb|ABI63158.1| phosphatidylethanolamine N-methyltransferase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 313

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHP 94
           ++  E+   L G  V+E+G G G L         +++  I+       + ++     Q  
Sbjct: 138 RRAVEAVNRLTGQQVLEVGVGTG-LALPRYHRD-KRITGIDLSTDMLALGRERVREQQLA 195

Query: 95  NRLEIIQDDA 104
           N   +++ DA
Sbjct: 196 NVETLLEMDA 205


>gi|71083831|ref|YP_266551.1| cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062944|gb|AAZ21947.1| cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 396

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI 76
           QN     N ++ I +         V++IG G G+L   +      +V  I
Sbjct: 157 QN-----NKIQHIIKKLNIKPNQKVLDIGCGWGSLAIDIAKSNNCEVTGI 201


>gi|297737676|emb|CBI26877.3| unnamed protein product [Vitis vinifera]
          Length = 484

 Score = 35.2 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G  V+EIG G G+ T  L    A +V+VI+  +   P   +  + H N +  +  D 
Sbjct: 38  GKHVVEIGKGIGHFTDELAKQAA-QVLVIDFTESKIPK-NEFLNGHFNNVTFMCADV 92


>gi|225424283|ref|XP_002280918.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 489

 Score = 35.2 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G  V+EIG G G+ T  L    A +V+VI+  +   P   +  + H N +  +  D 
Sbjct: 43  GKHVVEIGKGIGHFTDELAKQAA-QVLVIDFTESKIPK-NEFLNGHFNNVTFMCADV 97


>gi|169834631|ref|YP_001693424.1| hypothetical protein CLD_A0185 [Clostridium botulinum B1 str. Okra]
 gi|169123179|gb|ACA47014.1| conserved domain protein [Clostridium botulinum B1 str. Okra]
          Length = 760

 Score = 35.2 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91
            NI+ ++ + +   +   ++E  AG G++  ++       K+ V+E +     IL+    
Sbjct: 540 QNIVGEMLQHADIKENDIILEPSAGSGHIADLIREKYPDNKLDVVEFNYSLSQILEKKGH 599

Query: 92  QHPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANLPY 127
                  +I DD L V     D      +    +II N P+
Sbjct: 600 ------NVIADDFLSVNLKENDNNDSIIVEEYDKIIMNPPF 634


>gi|168010688|ref|XP_001758036.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690913|gb|EDQ77278.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 172

 Score = 35.2 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
           ++  ++ + +    G  V+++G G   L          +   +E D   F   +   ++ 
Sbjct: 30  HVAHRMLKLAAVGPGDLVVDLGCGDARLLIAAAEEFGAQGYGVELDPALFAEAQRAVAKE 89

Query: 94  PNR--LEIIQDDALKVDFEK 111
                + + + DA   D  K
Sbjct: 90  NLNHLITVERKDAFSTDLTK 109


>gi|147840327|emb|CAN75113.1| hypothetical protein VITISV_043577 [Vitis vinifera]
          Length = 431

 Score = 35.2 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
           G  V+EIG G G+ T  L    A +V+VI+  +   P   +  + H N +  +  D 
Sbjct: 38  GKHVVEIGKGIGHFTDELAKQAA-QVLVIDFTESKIPK-NEFLNGHFNNVTFMCADV 92


>gi|145630900|ref|ZP_01786677.1| hypothetical protein CGSHi22421_02861 [Haemophilus influenzae
           R3021]
 gi|144983560|gb|EDJ91028.1| hypothetical protein CGSHi22421_02861 [Haemophilus influenzae
           R3021]
          Length = 265

 Score = 35.2 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 5/111 (4%)

Query: 41  ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100
           ++       TV++IG GPG     L   G+  V  ++          D  +Q   +L + 
Sbjct: 53  QAMNVQTDETVLDIGCGPGTFAVPLAQQGS-TVYALDYSNGML----DCLAQFKQKLGLH 107

Query: 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLT 151
                   +   ++      ++      +   ++    +      F  S+T
Sbjct: 108 HLTTFHKSWADNWDDVPQADVVLASRSTLVDDMIEKLCAKAKKRVFLTSVT 158


>gi|154253297|ref|YP_001414121.1| type 11 methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154157247|gb|ABS64464.1| Methyltransferase type 11 [Parvibaculum lavamentivorans DS-1]
          Length = 279

 Score = 35.2 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI---EKDQQFFPILKDISSQHPNRLEII 100
           G  +   V++IGAG G   + L       V  +   E   +    L +  +    R++++
Sbjct: 63  GIGETSKVLDIGAGYGGAARHLAKTRGCHVTCVNISETQNKLNREL-NRKAGLEERVDVV 121

Query: 101 QDDA 104
             D 
Sbjct: 122 HGDF 125


>gi|150015546|ref|YP_001307800.1| methyltransferase type 11 [Clostridium beijerinckii NCIMB 8052]
 gi|149902011|gb|ABR32844.1| Methyltransferase type 11 [Clostridium beijerinckii NCIMB 8052]
          Length = 186

 Score = 35.2 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
          I K+I +     +   ++E+  G G L Q +
Sbjct: 38 IAKQIVKELDIKETDRILEVACGAGGLAQYI 68


>gi|301095794|ref|XP_002896996.1| protein arginine N-methyltransferase 1 [Phytophthora infestans
           T30-4]
 gi|262108425|gb|EEY66477.1| protein arginine N-methyltransferase 1 [Phytophthora infestans
           T30-4]
          Length = 343

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 37  KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHP 94
             I +S        V+++G G G L+      GA+ V  ++         ++I  ++   
Sbjct: 50  NAILQSKHLFKDKVVLDVGCGTGILSMFAAKAGAKHVYGVDC-SGILTQAREIVKANGFA 108

Query: 95  NRLEIIQD 102
           +++ +IQ 
Sbjct: 109 DKITLIQG 116


>gi|229587337|ref|YP_002860375.1| domain of unknown function [Clostridium botulinum Ba4 str. 657]
 gi|229260116|gb|ACQ51153.1| conserved domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 760

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91
            NI+ ++ + +   +   ++E  AG G++  ++       K+ V+E +     IL+    
Sbjct: 540 QNIVGEMLQHADIKENDIILEPSAGSGHIADLIREKYPDNKLDVVEFNYSLSQILEKKGH 599

Query: 92  QHPNRLEIIQDDALKV-----DFEKFFNISSPIRIIANLPY 127
                  +I DD L V     D      +    +II N P+
Sbjct: 600 ------NVIADDFLSVNLKENDNNDSIIVEEYDKIIMNPPF 634


>gi|182416082|ref|YP_001821148.1| methyltransferase type 11 [Opitutus terrae PB90-1]
 gi|177843296|gb|ACB77548.1| Methyltransferase type 11 [Opitutus terrae PB90-1]
          Length = 236

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 40  AESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIV-IEKDQQFFPIL--KDISSQHPN 95
            ++  +  G  V+EIG GPG  L  +   +G   ++  +++  +       ++  + H  
Sbjct: 68  VQTMEARAGEHVLEIGFGPGCALALLSAAVGPDGLVAGVDRSPEMLAAATRRNRPAVHGG 127

Query: 96  RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139
           R+ +    A ++ + +  +    + +     +   TR L   + 
Sbjct: 128 RMRLTTGTADQLAWPE-ASFDRVLSVSNVQFWQPATRSLAEILR 170


>gi|91773834|ref|YP_566526.1| protein-L-isoaspartate O-methyltransferase [Methanococcoides
           burtonii DSM 6242]
 gi|121691634|sp|Q12UV0|PIMT_METBU RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|91712849|gb|ABE52776.1| protein-L-isoaspartate O-methyltransferase [Methanococcoides
           burtonii DSM 6242]
          Length = 203

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILK-DI 89
            +++  + +     +G+T++EIG+G G    ++  L     KV  +E+  +   + + ++
Sbjct: 52  PHMVAIMCDLLKITEGMTILEIGSGSGYNAAVMAELAGENGKVYTVERIPELVDLARNNL 111

Query: 90  SSQHPNRLEIIQDD 103
                + + ++ DD
Sbjct: 112 ERAGYSNVTVVHDD 125


>gi|87201221|ref|YP_498478.1| ArsR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136902|gb|ABD27644.1| transcriptional regulator, ArsR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 341

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 30  LLDLNILKKIAESS---------GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
           L  L+I     E++         G      ++++G G G +   L    A  V+  +K  
Sbjct: 137 LRSLHIADGPVEAALTEMLLALSGDGSLGRLLDVGTGTGRI-AELFAPNAAHVVAFDKSP 195

Query: 81  QFFPILKDISSQHP-NRLEIIQDDA 104
               I +      P + +E++Q D 
Sbjct: 196 DMLRIARARLQHLPADAVELVQGDF 220


>gi|303247815|ref|ZP_07334083.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
 gi|302490716|gb|EFL50617.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
          Length = 269

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 52  IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111
           ++IG G G  T+ L  LGAR +  I+    F    ++  +  P  ++++  +AL + F  
Sbjct: 50  LDIGCGEGTNTRRLARLGAR-MRAIDIAPTFVRHARNAEAAEPLDIDVLLGNALSLPFAD 108

Query: 112 F-FNISSPIRIIANLPYN 128
             F+ ++    + ++P +
Sbjct: 109 ASFDFATAFMSLMDMPDH 126


>gi|294634771|ref|ZP_06713300.1| protein-L-isoaspartate O-methyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291091830|gb|EFE24391.1| protein-L-isoaspartate O-methyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 210

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92
             ++ ++ E         V+EIG G G  T +L  L A  V  +E+       L+  + +
Sbjct: 61  PYMVARMTELLALQPNSRVLEIGTGSGYQTAVLAHL-APHVYSVER----IKSLQWQAKR 115

Query: 93  HPNRLEIIQDDALKVDFEKFFNISSPIRII 122
              +L++        D  + +    P   I
Sbjct: 116 RLKQLDLHNVSTRHGDGWQGWASRGPFDAI 145


>gi|253997900|ref|YP_003049963.1| sun protein [Methylovorus sp. SIP3-4]
 gi|253984579|gb|ACT49436.1| sun protein [Methylovorus sp. SIP3-4]
          Length = 427

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 7/139 (5%)

Query: 43  SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
                G+ V++    PG  T  +L L    ++ ++ D       ++   +   + +++  
Sbjct: 239 LDLAPGMRVLDACCAPGGKTGHILELADVDLVAMDSDAGRLRRTEENLQRLKLKAQLVTG 298

Query: 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEV---- 158
           DA   D   +++     RI+A++P    + ++   +         +  + + Q+ +    
Sbjct: 299 DA--ADASGWWDGRPFDRILADVPCT-ASGIVRRHVDIKWLRREADVASFVRQQALILPQ 355

Query: 159 GERITAQKNSPHYGRLSVL 177
             +  A+     Y   SV 
Sbjct: 356 LWQCLAKGGKLLYATCSVF 374


>gi|134099712|ref|YP_001105373.1| putative methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|291008283|ref|ZP_06566256.1| putative methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|133912335|emb|CAM02448.1| putative methyltransferase [Saccharopolyspora erythraea NRRL 2338]
          Length = 261

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 9/107 (8%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLE 98
               G       +E+GAG G++ + L        V  ++ D ++      + +     L 
Sbjct: 37  IRGLGLAPDWRCLELGAGAGSIARWLARHCPEGHVEAVDNDVRY------LDAGDAANLT 90

Query: 99  IIQDDALK--VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTW 143
           + + D      +  +F  + +          +        W+    W
Sbjct: 91  VTEADVTAEGFEPGRFDLVHARFLFCHLPERDELLARAVRWLRPGGW 137


>gi|20090585|ref|NP_616660.1| hypothetical protein MA1733 [Methanosarcina acetivorans C2A]
 gi|19915618|gb|AAM05140.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 225

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 46  LDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104
            +  ++++IGAG G L+  L+         +I+  ++   + KD   ++ N ++ I  D 
Sbjct: 41  TENPSILDIGAGTGLLSAFLMKRYPEASFTLIDISEKMLDMAKDRFGKNSN-IKYIAADY 99

Query: 105 LKVDFEKFFNI 115
            K DF   ++I
Sbjct: 100 SKYDFADKYDI 110


>gi|56477026|ref|YP_158615.1| tRNA and rRNA cytosine-C5-methylase sun [Aromatoleum aromaticum
           EbN1]
 gi|56313069|emb|CAI07714.1| tRNA and rRNA cytosine-C5-methylases sun [Aromatoleum aromaticum
           EbN1]
          Length = 447

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 40  AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99
           A       G  V++  A PG     +L     +++ +E D +    ++D   +     ++
Sbjct: 260 ARWLDLAPGQRVLDACAAPGGKAAHILETKPVELVALELDPKRVQRIRDNLERLGLDAQV 319

Query: 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG-----TRLLFNWISADTWPPFWESLTLLF 154
           ++ D   +D    ++     RI+A++P +          +  W+        + +     
Sbjct: 320 LRADCRALDTW--WDGRPFDRILADVPCSASGVARRHPDI-KWLRRREDVRRFAAQQADI 376

Query: 155 QKEVGERITAQKNSPHYGRLSVL 177
             +      A      Y   SV 
Sbjct: 377 V-DALWPTLAPGGRMLYVTCSVF 398


>gi|148265427|ref|YP_001232133.1| methyltransferase type 11 [Geobacter uraniireducens Rf4]
 gi|146398927|gb|ABQ27560.1| Methyltransferase type 11 [Geobacter uraniireducens Rf4]
          Length = 226

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 48  GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102
           G  V+EIG G G +TQ L     R V     D     +    ++   + +  +QD
Sbjct: 21  GKEVLEIGCGKGRITQDLAKHAERVVAT---DPDAAALETARATIVADNVTFMQD 72


>gi|260062482|ref|YP_003195562.1| putative methyltransferase [Robiginitalea biformata HTCC2501]
 gi|88784047|gb|EAR15217.1| putative methyltransferase [Robiginitalea biformata HTCC2501]
          Length = 180

 Score = 35.2 bits (80), Expect = 9.9,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 39  IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLE 98
           I  +        V+++ AG GN++    + G   +  ++ D      ++  +++    + 
Sbjct: 36  ILAAEMDWPRAHVLDLYAGTGNISYESASRGGETITAVDADAGCVAFIRKTAAELDMPIH 95

Query: 99  IIQDDALKVDFEKFFNISSPIRIIANLPYNI 129
            ++ D L    +          +  + PY++
Sbjct: 96  AVRSDCLAYLRQTALKFD---LVFGDPPYDM 123


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.160    0.477 

Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,864,908,628
Number of Sequences: 14124377
Number of extensions: 281001505
Number of successful extensions: 848888
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 7559
Number of HSP's successfully gapped in prelim test: 6567
Number of HSP's that attempted gapping in prelim test: 817613
Number of HSP's gapped (non-prelim): 14757
length of query: 284
length of database: 4,842,793,630
effective HSP length: 137
effective length of query: 147
effective length of database: 2,907,753,981
effective search space: 427439835207
effective search space used: 427439835207
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 81 (35.6 bits)